Query 016890
Match_columns 381
No_of_seqs 260 out of 1446
Neff 7.7
Searched_HMMs 46136
Date Fri Mar 29 03:43:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016890.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016890hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2632 Rhomboid family protei 100.0 2.5E-29 5.3E-34 229.9 16.9 207 13-228 5-212 (258)
2 KOG0858 Predicted membrane pro 100.0 2E-27 4.3E-32 214.4 16.9 203 13-237 3-210 (239)
3 PF04511 DER1: Der1-like famil 99.9 4.9E-24 1.1E-28 193.5 15.6 190 22-227 1-195 (197)
4 PRK10907 intramembrane serine 99.9 5.2E-22 1.1E-26 187.9 17.0 171 22-210 93-267 (276)
5 COG5291 Predicted membrane pro 99.9 9E-23 1.9E-27 183.1 10.6 176 22-217 19-198 (313)
6 PTZ00101 rhomboid-1 protease; 99.9 1.1E-21 2.3E-26 185.5 15.9 177 21-216 51-243 (278)
7 COG0705 Membrane associated se 99.8 1.3E-19 2.7E-24 168.3 17.6 179 22-213 16-211 (228)
8 PF01694 Rhomboid: Rhomboid fa 99.8 1E-18 2.2E-23 150.3 9.2 138 60-213 2-142 (145)
9 KOG2289 Rhomboid family protei 99.6 1.8E-16 4E-21 151.1 1.4 135 57-210 112-251 (316)
10 KOG2290 Rhomboid family protei 99.1 2.1E-11 4.6E-16 118.8 3.8 140 61-216 448-588 (652)
11 KOG2890 Predicted membrane pro 98.9 1.2E-08 2.5E-13 95.6 12.2 193 19-216 21-218 (326)
12 KOG4463 Uncharacterized conser 98.9 3E-09 6.5E-14 97.4 6.8 130 21-160 10-139 (323)
13 PF08551 DUF1751: Eukaryotic i 98.9 2.8E-09 6.1E-14 85.9 4.8 90 63-154 7-96 (99)
14 KOG2980 Integral membrane prot 98.3 5E-07 1.1E-11 85.1 4.5 190 11-211 102-299 (310)
15 smart00553 SEP Domain present 56.9 7.5 0.00016 30.9 1.8 15 291-305 74-88 (93)
16 KOG2086 Protein tyrosine phosp 45.7 16 0.00035 36.3 2.6 12 291-302 256-267 (380)
17 PF09527 ATPase_gene1: Putativ 33.7 1.6E+02 0.0035 20.4 6.5 39 78-116 8-47 (55)
18 PF14851 FAM176: FAM176 family 26.9 1.6E+02 0.0035 25.6 5.4 33 80-118 4-36 (153)
19 PF13105 DUF3959: Protein of u 22.7 5.7E+02 0.012 23.0 8.4 21 11-31 41-61 (239)
No 1
>KOG2632 consensus Rhomboid family proteins [Function unknown]
Probab=99.96 E-value=2.5e-29 Score=229.86 Aligned_cols=207 Identities=44% Similarity=0.727 Sum_probs=186.2
Q ss_pred hHHHHHhccchHHHHHHHHHHHHHHHHHHHhcccccchheecchhhhcCCccchhchhhhccccHHHHHHHHHHHHHHHH
Q 016890 13 TRANQWWESIPFFTSAVVIVCGTIYLICLLFGYDSFYEICFLPSAVISRFQVYRFYTSIVFHGSLLHVLFNMLALVPLGS 92 (381)
Q Consensus 13 ~~~~~~~~~~P~vTr~ll~~~v~v~ll~~~~~~~~~~~~~~~p~~i~~~~q~WRL~Ts~f~H~~~~hllfN~~~L~~~g~ 92 (381)
.+..++|..+|.+|..++.+|.+++++..... ..+.+..|...+.+.|+||++||.++|.+..|++|||+.++..+.
T Consensus 5 g~~~~~~~~~p~~ts~~~~~~~~i~lv~~~~~---i~~~~~l~~~~l~~~ql~RL~Ty~l~H~s~~hllfnmlaL~~~g~ 81 (258)
T KOG2632|consen 5 GRVGQFWMKIPLLTSIVVVLAILIYLVSFFPG---IVEVLGLPSELLINWQLYRLITYALVHLSLPHLLFNMLALWPLGS 81 (258)
T ss_pred ccCccccccchHHHHHHHHHHHHHHHHhccch---hhhHhcCCHHHhhhHHHHHHHHHHHHhccHHHHHHHHHHHHhchh
Confidence 35567889999999999999999999887743 337778888888999999999999999999999999999999999
Q ss_pred HHHHhhC-hHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccchhHHHHHHHHHHHhhcCCceeeeeeecc
Q 016890 93 ELERIMG-SVRMFYITILLATSNAILHLLIALLVAHIPFYRLQNVMDECAIGFSGVIFSLIVIETSLSGAQSRSVFGLFN 171 (381)
Q Consensus 93 ~LE~~~G-s~~~l~l~ll~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~~~iG~Sg~ifall~~~~~~~p~~~~~ifg~~~ 171 (381)
.+|+.+| +.+++.+..+.+++.+++++++..... ...+..+.+++|.|++.|+++...+...|.+++++|+.+.
T Consensus 82 ~fE~~~G~t~~~l~~~~llalf~gIl~ll~~~~~~-----~~d~~~~~~a~G~s~v~Fam~~~~~~~sp~r~~~~fg~~s 156 (258)
T KOG2632|consen 82 QFERTHGTTVRILMFTVLLALFSGILYLLAYHVFL-----LSDLVYVEGAIGFSGVLFAMMAVLEVQSPVRSRSVFGLFS 156 (258)
T ss_pred HHHhhccceehHHHHHHHHHHHHHHHHHHHHHHHh-----hcchhhhcccccccHHHHHHHHHHhhcCcccchhhccccc
Confidence 9999999 999999999999999999998875332 2334457789999999999999989999998889999999
Q ss_pred chhhHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHhhhcccCCCchhhhhhhcc
Q 016890 172 IPAKWYPLILLVLFQVLMTNVSLLGHLCGILSGFAYTYGFFNLLMPGTSFYSAIESS 228 (381)
Q Consensus 172 Ip~~~~p~~ll~~~~ll~~~~s~~~hL~Gil~G~ly~~~~l~~~~p~~~~~~~ie~~ 228 (381)
||+++.||+.+++++++.|+.++++|+||+++|+.|.++.+ ++.|..+.++.+|..
T Consensus 157 iP~~l~Pw~lLi~~~~lvp~aSFlghl~GllvG~ay~~~~f-~lip~~~~~~~v~~~ 212 (258)
T KOG2632|consen 157 IPIVLAPWALLIATQILVPQASFLGHLCGLLVGYAYAFSSF-GLIPGIRNYRAVTEA 212 (258)
T ss_pred ccHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHHHhh-ccCCcchhHHHhhhh
Confidence 99999999999999999999999999999999999999988 899999999999763
No 2
>KOG0858 consensus Predicted membrane protein [Function unknown]
Probab=99.95 E-value=2e-27 Score=214.40 Aligned_cols=203 Identities=21% Similarity=0.329 Sum_probs=174.2
Q ss_pred hHHHHHhccchHHHHHHHHHHHHHHHHHHHhcccccchheecchhhhcCCccchhchhhhcccc-HHHHHHHHHHHHHHH
Q 016890 13 TRANQWWESIPFFTSAVVIVCGTIYLICLLFGYDSFYEICFLPSAVISRFQVYRFYTSIVFHGS-LLHVLFNMLALVPLG 91 (381)
Q Consensus 13 ~~~~~~~~~~P~vTr~ll~~~v~v~ll~~~~~~~~~~~~~~~p~~i~~~~q~WRL~Ts~f~H~~-~~hllfN~~~L~~~g 91 (381)
+.+..++.++|||||+..++|+++.+++.+ +..++.++.++|+.+++++|+||++|+.+..+. -+|.++||+++|.++
T Consensus 3 ~~l~~~~~~iPpVTR~~~~~~v~tt~~~~l-~lIsP~~l~~~p~Lv~kk~QiWRliTs~lyfg~~gf~fl~n~~FlyrY~ 81 (239)
T KOG0858|consen 3 MDLLNFYLQIPPVTRYYTTACVVTTLLVRL-DLISPFQLYLNPELVFKKFQIWRLITSFLYFGPFGFDFLMNLYFLYRYS 81 (239)
T ss_pred hhHHHHHhcCChHHHHHHHHHHHHHHHHhh-cccCchheEecHHHHHhHhHHHHhhhhhheeccccHHHHHHHHHHHHHH
Confidence 356669999999999999999999999998 889999999999999999999999999999988 599999999999999
Q ss_pred HHHHHhhC---hHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccchhHHHHHHHHHHHhhcCCceeeeee
Q 016890 92 SELERIMG---SVRMFYITILLATSNAILHLLIALLVAHIPFYRLQNVMDECAIGFSGVIFSLIVIETSLSGAQSRSVFG 168 (381)
Q Consensus 92 ~~LE~~~G---s~~~l~l~ll~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~~~iG~Sg~ifall~~~~~~~p~~~~~ifg 168 (381)
+.||+..- +.+|++++++++++..+....... .+. ..+.+++++|.|++.+|+.+++++|
T Consensus 82 ~~LE~g~f~~rtadf~~mllf~~~l~~~~~~~~~~-----~fL------------g~~l~~~l~YvWs~~Np~~~v~F~g 144 (239)
T KOG0858|consen 82 SMLEEGSFRGRTADFLYMLLFGAVLLTLTGLFVYI-----VFL------------GQSLVFMLVYVWSKRNPDVIVSFFG 144 (239)
T ss_pred HHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHH-----HHH------------HHHHHHHHHHHHHhhCCCceEEEEE
Confidence 99998763 478888888888777755442221 112 2678899999999999999999999
Q ss_pred eccchhhHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHhhhcccCCCchh-hhhhhccccccccccC
Q 016890 169 LFNIPAKWYPLILLVLFQVLMTNVSLLGHLCGILSGFAYTYGFFNLLMPGTSF-YSAIESSSLLSTCIRQ 237 (381)
Q Consensus 169 ~~~Ip~~~~p~~ll~~~~ll~~~~s~~~hL~Gil~G~ly~~~~l~~~~p~~~~-~~~ie~~~~l~~~~~~ 237 (381)
+++++++|+||+++.+..++..+ + +..+.|+++||+|.+ ++.+.|.... .+.++++.+++++..+
T Consensus 145 ~~~f~a~YlPwvll~fs~l~g~~-~-~~dllGi~~GHiy~f--l~~~~p~~~gg~~~l~TP~~l~rl~~~ 210 (239)
T KOG0858|consen 145 LITFKAPYLPWVLLGFSFLFGGS-I-LVDLLGIIVGHIYYF--LDDVYPRDYGGRDLLKTPQFLKRLFAD 210 (239)
T ss_pred EecCccccchHHHHHHHHHhCCc-h-HHHHHhhhhheeEEE--EeeeccCCcCCcCcccCHHHHHHhcCC
Confidence 99999999999999887776543 3 999999999999998 8999888766 7777888888877655
No 3
>PF04511 DER1: Der1-like family; InterPro: IPR007599 The endoplasmic reticulum (ER) of the yeast Saccharomyces cerevisiae (Baker's yeast) contains a proteolytic system able to selectively degrade misfolded lumenal secretory proteins. For examination of the components involved in this degradation process, mutants were isolated. They could be divided into four complementation groups. The mutations led to stabilisation of two different substrates for this process, and the classes were called der for degradation in the ER. DER1 was cloned by complementation of the der1-2 mutation. The DER1 gene codes for a novel, hydrophobic protein that is localized to the ER. Deletion of DER1 abolished degradation of the substrate proteins, suggesting that the function of the Der1 protein may be specifically required for the degradation process associated with the ER []. Interestingly this family seems distantly related to the Rhomboid family of membrane peptidases. This family may also mediate degradation of misfolded proteins.
Probab=99.91 E-value=4.9e-24 Score=193.50 Aligned_cols=190 Identities=29% Similarity=0.402 Sum_probs=153.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHhcccccchheecchhhhcCCccchhchhhhccccH-HHHHHHHHHHHHHHHHHHHhh--
Q 016890 22 IPFFTSAVVIVCGTIYLICLLFGYDSFYEICFLPSAVISRFQVYRFYTSIVFHGSL-LHVLFNMLALVPLGSELERIM-- 98 (381)
Q Consensus 22 ~P~vTr~ll~~~v~v~ll~~~~~~~~~~~~~~~p~~i~~~~q~WRL~Ts~f~H~~~-~hllfN~~~L~~~g~~LE~~~-- 98 (381)
+||+||++++.++++.+++.+ +..++.++.++++.+++++|+||++|++|..++. ++++++++.++.+++.||+..
T Consensus 1 iPpVTR~~~~~~~~~s~l~~~-~~~~~~~l~~~~~~v~~~~q~WRl~Tsff~~g~~~~~~l~~~~~l~~~s~~LE~~~f~ 79 (197)
T PF04511_consen 1 IPPVTRYWLISTVALSLLVSF-GIISPYYLYFDWELVFKKFQIWRLFTSFFYFGPFSLNFLFNLYFLYQYSSSLEEGHFQ 79 (197)
T ss_pred CChhHHHHHHHHHHHHHHHHC-CCCCHHHeeECcHHHhhhcCceeeEEEEEEEcCCCHHHHHHHHHHHHHhhHhccCCCC
Confidence 699999999999999999887 7778889999999999999999999999998776 899999999999999999984
Q ss_pred C-hHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccchhHHHHHHHHHHHhhcCCceeeeeeeccchhhHH
Q 016890 99 G-SVRMFYITILLATSNAILHLLIALLVAHIPFYRLQNVMDECAIGFSGVIFSLIVIETSLSGAQSRSVFGLFNIPAKWY 177 (381)
Q Consensus 99 G-s~~~l~l~ll~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~~~iG~Sg~ifall~~~~~~~p~~~~~ifg~~~Ip~~~~ 177 (381)
+ +.+|+++++++++...++..+..... .+. ..-..+.+.++++.|++.+|+.+++++|++++|++|+
T Consensus 80 ~~~ady~~~ll~~~~~i~~~~~~~~~~~-----------~~~-~~l~~~l~~~l~Y~wsr~np~~~v~~~g~~~i~a~yl 147 (197)
T PF04511_consen 80 GRSADYLWFLLFGASLILILSLLIGPYF-----------FNI-PFLGSSLSFALTYIWSRKNPNAQVSFFGLFTIKAKYL 147 (197)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhhccch-----------hHH-HHHHHHHHHHHHHHHHHhCcccceeeEEEEEEChhhH
Confidence 2 26788888777665555544321100 011 1223678899999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHhhhcccCCCchh-hhhhhc
Q 016890 178 PLILLVLFQVLMTNVSLLGHLCGILSGFAYTYGFFNLLMPGTSF-YSAIES 227 (381)
Q Consensus 178 p~~ll~~~~ll~~~~s~~~hL~Gil~G~ly~~~~l~~~~p~~~~-~~~ie~ 227 (381)
||+++++..++.+ .+...++.|+++||+|.+ ++.+.|.... .+.+++
T Consensus 148 P~~~~~~~~l~~~-~~~~~~l~Gi~~Ghly~f--l~~~~p~~~~G~~~l~t 195 (197)
T PF04511_consen 148 PWVLLAFSLLFGG-SSPIPDLLGILVGHLYYF--LKDIYPRLPGGKDLLKT 195 (197)
T ss_pred HHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHH--HHHhcccccCCCccCCC
Confidence 9998877655544 467899999999999998 8888887764 444444
No 4
>PRK10907 intramembrane serine protease GlpG; Provisional
Probab=99.88 E-value=5.2e-22 Score=187.88 Aligned_cols=171 Identities=23% Similarity=0.386 Sum_probs=124.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHhcccccchheecchhhhcCCccchhchhhhccccHHHHHHHHHHHHHHHHHHHHhhChH
Q 016890 22 IPFFTSAVVIVCGTIYLICLLFGYDSFYEICFLPSAVISRFQVYRFYTSIVFHGSLLHVLFNMLALVPLGSELERIMGSV 101 (381)
Q Consensus 22 ~P~vTr~ll~~~v~v~ll~~~~~~~~~~~~~~~p~~i~~~~q~WRL~Ts~f~H~~~~hllfN~~~L~~~g~~LE~~~Gs~ 101 (381)
..|+|..++++|+++|++..+.+......+...|......+|+||++|+.|+|.+++|+++||++++.+|..+|+.+|+.
T Consensus 93 ~~p~T~~li~i~i~vf~l~~~~~~~~~~~~l~~~~~~~~~~q~WRl~T~~flH~~~~Hl~fNml~l~~lG~~iE~~~G~~ 172 (276)
T PRK10907 93 AGPLTLGVMIACVVVFILMQILGDQTVMLWLAWPFDPSLKFELWRYFTHALLHFSLLHILFNLLWWWYLGGAVEKRLGSG 172 (276)
T ss_pred CCCHHHHHHHHHHHHHHHHHHhccHHHHHHHhccccccccCCcHHHHhHHHHhCCHHHHHHHHHHHHHHHHHHHHHHChH
Confidence 45699999999999999987744332223333344445689999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccchhHHHHHHHHHHHhhcCCceeeeeeeccchhhHHHHHH
Q 016890 102 RMFYITILLATSNAILHLLIALLVAHIPFYRLQNVMDECAIGFSGVIFSLIVIETSLSGAQSRSVFGLFNIPAKWYPLIL 181 (381)
Q Consensus 102 ~~l~l~ll~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~~~iG~Sg~ifall~~~~~~~p~~~~~ifg~~~Ip~~~~p~~l 181 (381)
+++.+|++++++++++...+. .....|+||+++|++++........+ -.+ +.+|..++.+++
T Consensus 173 ~~l~l~l~s~i~~~~~~~~~~---------------~~~~gGaSGvVygL~g~~~~~~~~~p--~~~-~~lp~~~~~f~l 234 (276)
T PRK10907 173 KLIVITLISALLSGWVQSKFS---------------GPWFGGLSGVVYALMGYVWLRGERDP--QSG-IYLPRGLIAFAL 234 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHc---------------cchhhHHHHHHHHHHHHHHHHhcccc--ccc-hhhhHHHHHHHH
Confidence 999999999999998765432 13357999999999975332211111 111 123333322222
Q ss_pred ----HHHHHHhhcchhHHHHHHHHHHHHHHHHh
Q 016890 182 ----LVLFQVLMTNVSLLGHLCGILSGFAYTYG 210 (381)
Q Consensus 182 ----l~~~~ll~~~~s~~~hL~Gil~G~ly~~~ 210 (381)
+.+..++.++++..+|++|+++|.++++.
T Consensus 235 lwl~~g~~~~~g~~Ian~AHlgGli~Gll~g~~ 267 (276)
T PRK10907 235 LWLVAGYFDLFGMSIANAAHVAGLAVGLAMAFW 267 (276)
T ss_pred HHHHHHHHHccCcccHHHHHHHHHHHHHHHHHH
Confidence 22334445678999999999999999883
No 5
>COG5291 Predicted membrane protein [Function unknown]
Probab=99.88 E-value=9e-23 Score=183.11 Aligned_cols=176 Identities=17% Similarity=0.313 Sum_probs=137.9
Q ss_pred chHHHHHHHHHHHHHHHHHHHhcccccchheecchhhhcCCccchhchhhhccccH-HHHHHHHHHHHHHHHHHHHhh--
Q 016890 22 IPFFTSAVVIVCGTIYLICLLFGYDSFYEICFLPSAVISRFQVYRFYTSIVFHGSL-LHVLFNMLALVPLGSELERIM-- 98 (381)
Q Consensus 22 ~P~vTr~ll~~~v~v~ll~~~~~~~~~~~~~~~p~~i~~~~q~WRL~Ts~f~H~~~-~hllfN~~~L~~~g~~LE~~~-- 98 (381)
+||+||++.++..++.++..+ +..++....+.+...+++.|+||++|+.++.+.- +..+++++++|.+++.||+-+
T Consensus 19 IPPITRy~~ll~~a~til~~~-~lvsPwy~ly~~pL~~k~~qiwRlfTs~~~~~~~~~d~~M~vyf~Y~yS~~LE~g~f~ 97 (313)
T COG5291 19 IPPITRYMTLLISAVTILVYV-DLVSPWYSLYYSPLFLKRLQIWRLFTSFLYFGKPTLDMFMHVYFLYRYSRMLEEGCFN 97 (313)
T ss_pred CCcHHHHHHHHHHHHHHHHHH-hhcCccceeeechhHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHhccccC
Confidence 899999999999999998887 6677777777888888999999999988777665 999999999999999999875
Q ss_pred -ChHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccchhHHHHHHHHHHHhhcCCceeeeeeeccchhhHH
Q 016890 99 -GSVRMFYITILLATSNAILHLLIALLVAHIPFYRLQNVMDECAIGFSGVIFSLIVIETSLSGAQSRSVFGLFNIPAKWY 177 (381)
Q Consensus 99 -Gs~~~l~l~ll~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~~~iG~Sg~ifall~~~~~~~p~~~~~ifg~~~Ip~~~~ 177 (381)
+-++|+++++.+.++...+..+.. .+++=.++++.++.+.|+..++..++++||++++|+||+
T Consensus 98 ~~lv~Y~~yl~~~~l~i~a~s~I~g----------------g~saL~tsf~a~ItY~WS~~N~~~~Iqf~g~i~v~gkYl 161 (313)
T COG5291 98 TSLVEYFWYLLVISLVIFAISNIYG----------------GISALGTSFSATITYIWSKRNPRAIIQFFGFISVPGKYL 161 (313)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHhc----------------chhhhcchhhhheeeeeeecCCceEEEEEEeeecchhhh
Confidence 345777777666554433332221 122223667788889999999999999999999999999
Q ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHhhhcccCC
Q 016890 178 PLILLVLFQVLMTNVSLLGHLCGILSGFAYTYGFFNLLMP 217 (381)
Q Consensus 178 p~~ll~~~~ll~~~~s~~~hL~Gil~G~ly~~~~l~~~~p 217 (381)
|++++.+..+... ......+.|+.+||+.-+ ++.++|
T Consensus 162 P~Illgfsfl~~~-g~~i~~vlGf~~g~~~h~--~g~I~~ 198 (313)
T COG5291 162 PFILLGFSFLSRR-GISIDDVLGFVVGHLFHY--FGDIYP 198 (313)
T ss_pred hHHHHHHHHHhcC-Cccceeeeeeeecccccc--ccchhh
Confidence 9998887766653 356778899999987654 554443
No 6
>PTZ00101 rhomboid-1 protease; Provisional
Probab=99.88 E-value=1.1e-21 Score=185.45 Aligned_cols=177 Identities=20% Similarity=0.283 Sum_probs=126.6
Q ss_pred cchHHHHHHHHHHHHHHHHHHHhcccc--------cchh-eecchhhhcCCccchhchhhhccccHHHHHHHHHHHHHHH
Q 016890 21 SIPFFTSAVVIVCGTIYLICLLFGYDS--------FYEI-CFLPSAVISRFQVYRFYTSIVFHGSLLHVLFNMLALVPLG 91 (381)
Q Consensus 21 ~~P~vTr~ll~~~v~v~ll~~~~~~~~--------~~~~-~~~p~~i~~~~q~WRL~Ts~f~H~~~~hllfN~~~L~~~g 91 (381)
++|-+|..++++.+++|++........ ...+ +..|..+ +++|+||++|+.|+|.+++|+++||++++.+|
T Consensus 51 ~i~~l~~~Iiii~iivfil~l~~~~~~~l~p~~~~L~~~Ga~~~~~i-~~gq~WRLiT~~FlH~~~~HLl~Nm~~l~~~G 129 (278)
T PTZ00101 51 TWKSFIMAISIIQIIVFIISVSIKPADFLTPSDSLLVTLGANVASRI-KQGEIHRLILPIFLHANIFHTFFNVFFQLRMG 129 (278)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhcccccCCCCHHHHHHHhCcchhhh-hcCCCHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 568899999999999998876632111 1122 3455544 57999999999999999999999999999999
Q ss_pred HHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccchhHHHHHHHHHHHhhcCCceeeeeeecc
Q 016890 92 SELERIMGSVRMFYITILLATSNAILHLLIALLVAHIPFYRLQNVMDECAIGFSGVIFSLIVIETSLSGAQSRSVFGLFN 171 (381)
Q Consensus 92 ~~LE~~~Gs~~~l~l~ll~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~~~iG~Sg~ifall~~~~~~~p~~~~~ifg~~~ 171 (381)
..+|+.+|+.|+..+|++++++++++...+. .....+|+||.+||++++.....-.. +....
T Consensus 130 ~~lE~~~G~~r~~ilYl~sGi~G~l~s~~~~--------------~~~~svGASgAifGLiGa~~~~lil~----w~~~~ 191 (278)
T PTZ00101 130 FTLEKNYGIVKIIILYFLTGIYGNILSSSVT--------------YCPIKVGASTSGMGLLGIVTSELILL----WHVIR 191 (278)
T ss_pred HHHHHHHChHHHHHHHHHHHHHHHHHHHHHc--------------cCCcEEehhHHHHHHHHHHHHHHHHH----HHhhc
Confidence 9999999999999999999999999876542 13457999999999998664211000 00001
Q ss_pred chhhHHH----HHHHH---HHHHhhcchhHHHHHHHHHHHHHHHHhhhcccC
Q 016890 172 IPAKWYP----LILLV---LFQVLMTNVSLLGHLCGILSGFAYTYGFFNLLM 216 (381)
Q Consensus 172 Ip~~~~p----~~ll~---~~~ll~~~~s~~~hL~Gil~G~ly~~~~l~~~~ 216 (381)
.+.+... ++++. ...+..+++++.+|++|+++|+++++.+.+++.
T Consensus 192 ~~~~~~~~~i~~~li~~~l~~~~~g~~Id~~aHlGG~i~G~llg~~~~~~l~ 243 (278)
T PTZ00101 192 HRERVVFNIIFFSLISFFYYFTFNGSNIDHVGHLGGLLSGISMGILYNSQME 243 (278)
T ss_pred cHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHhhhh
Confidence 1111111 11111 111223678999999999999999997766544
No 7
>COG0705 Membrane associated serine protease [Amino acid transport and metabolism]
Probab=99.83 E-value=1.3e-19 Score=168.28 Aligned_cols=179 Identities=26% Similarity=0.429 Sum_probs=136.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHhcccccch-------heecchhhhcCC---ccchhchhhhccccHHHHHHHHHHHHHHH
Q 016890 22 IPFFTSAVVIVCGTIYLICLLFGYDSFYE-------ICFLPSAVISRF---QVYRFYTSIVFHGSLLHVLFNMLALVPLG 91 (381)
Q Consensus 22 ~P~vTr~ll~~~v~v~ll~~~~~~~~~~~-------~~~~p~~i~~~~---q~WRL~Ts~f~H~~~~hllfN~~~L~~~g 91 (381)
.|++|+.++.+|+++++............ ....|....... |+||++|+.|+|.++.|+++||+.++.+|
T Consensus 16 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~lit~~FlH~~~~Hll~N~~~l~~fg 95 (228)
T COG0705 16 APPVTLFLILLNILVFLLELVLGWSAIFLLTFLFRLFGLYPLNLLGALARDQLWRLITAIFLHAGFLHLLFNMLALWVFG 95 (228)
T ss_pred cchHHHHHHHHHHHHHHHHHHccchHHHHHHHhhhHHhhcchhhhccccccchHHHHHHHHHHhhHHHHHHHHHHHHHhh
Confidence 58899999999999999887744332221 445555554433 89999999999999999999999999999
Q ss_pred HHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccchhHHHHHHHHHHHhhcCCceeeeeee-c
Q 016890 92 SELERIMGSVRMFYITILLATSNAILHLLIALLVAHIPFYRLQNVMDECAIGFSGVIFSLIVIETSLSGAQSRSVFGL-F 170 (381)
Q Consensus 92 ~~LE~~~Gs~~~l~l~ll~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~~~iG~Sg~ifall~~~~~~~p~~~~~ifg~-~ 170 (381)
..+|+..|+.+|+.+|+++++++++.++.+... ...+.+|+||.+++++.+++...|..+...... +
T Consensus 96 ~~le~~~G~~~f~~~yl~~gl~~~~~~~~~~~~------------~~~~~~GASG~i~gllga~~~~~~~~~~~~~~~~~ 163 (228)
T COG0705 96 SNLERRLGTLRFLLFYLLSGLLAGLAQVLFGPK------------GGAPSLGASGAIFGLLGAYFLLFPFARILLLFLSL 163 (228)
T ss_pred HHHHHHhchhHHHHHHHHHHHHHHHHHHHHccc------------ccCcccchhHHHHHHHHHHHHHccccchhhhhccC
Confidence 999999999999999999999999986554310 115789999999999999999999876665443 4
Q ss_pred cchhhHHHHHHHHHHHHhhc------chhHHHHHHHHHHHHHHHHhhhc
Q 016890 171 NIPAKWYPLILLVLFQVLMT------NVSLLGHLCGILSGFAYTYGFFN 213 (381)
Q Consensus 171 ~Ip~~~~p~~ll~~~~ll~~------~~s~~~hL~Gil~G~ly~~~~l~ 213 (381)
+.+...+-.+ .++..++.+ ++++.+|++|++.|.+++..+.+
T Consensus 164 ~~~~~~~i~~-~~~~~~~~~~~~~~~~va~~aHl~G~i~G~l~~~~~~~ 211 (228)
T COG0705 164 PRPALILILI-WLLYSLFSGAGSFGPSVAWSAHLGGLIGGLLLAALLSR 211 (228)
T ss_pred chhHHHHHHH-HHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4444443322 222233221 47899999999999999985443
No 8
>PF01694 Rhomboid: Rhomboid family; InterPro: IPR022764 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of proteins contain serine peptidases belonging to the MEROPS peptidase family S54 (Rhomboid, clan ST). They are integral membrane proteins related to the Drosophila melanogaster (Fruit fly) rhomboid protein P20350 from SWISSPROT. Members of this family are found in archaea, bacteria and eukaryotes. The D. melanogaster rhomboid protease cleaves type-1 transmembrane domains using a catalytic triad composed of serine, histidine and asparagine contributed by different transmembrane domains. It cleaves the transmembrane proteins Spitz, Gurken and Keren within their transmembrane domains to release a soluble TGFalpha-like growth factor. Cleavage occurs in the Golgi, following translocation of the substrates from the endoplasmic reticulum membrane by Star, another transmembrane protein. The growth factors are then able to activate the epidermal growth factor receptor [, ]. Few substrates of mammalian rhomboid homologues have been determined, but rhomboid-like protein 2 (MEROPS S54.002) has been shown to cleave ephrin B3 []. Parasite-encoded rhomboid enzymes are also important for invasion of host cells by Toxoplasma and the malaria parasite. In Saccharomyces cerevisiae (Baker's yeast) the Pcp1 (MDM37) protein (MEROPS S54.007) is a mitochondrial endopeptidase required for the activation of cytochrome c peroxidase and for the processing of the mitochondrial dynamin-like protein Mgm1 [, ]. Mutations in Pcp1 result in cells have fragmented mitochondria, which have very few short tubulues []. This entry represents the 6 transmembrane helix rhomboid domain.; GO: 0004252 serine-type endopeptidase activity, 0016021 integral to membrane; PDB: 3UBB_A 3B45_A 3B44_A 2NRF_A 3TXT_A 2O7L_A 2XTU_A 2IRV_A 2XOW_A 2XTV_A ....
Probab=99.77 E-value=1e-18 Score=150.26 Aligned_cols=138 Identities=33% Similarity=0.492 Sum_probs=102.6
Q ss_pred cCCccchhchhhhccccHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccc
Q 016890 60 SRFQVYRFYTSIVFHGSLLHVLFNMLALVPLGSELERIMGSVRMFYITILLATSNAILHLLIALLVAHIPFYRLQNVMDE 139 (381)
Q Consensus 60 ~~~q~WRL~Ts~f~H~~~~hllfN~~~L~~~g~~LE~~~Gs~~~l~l~ll~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~ 139 (381)
+++|+||++|+.|+|.++.|+++|++.++.++..+|+.+|+.+++.+++++++.++++.+++.. ...
T Consensus 2 ~~~~~wrl~T~~f~h~~~~hl~~n~~~l~~~g~~lE~~~G~~~~~~~~l~~~~~~~l~~~~~~~-------------~~~ 68 (145)
T PF01694_consen 2 QNGQWWRLFTSPFVHANFLHLLFNLLALWFFGSLLERRLGSRRFLALYLLSGLLGSLLSLLFSP-------------PNQ 68 (145)
T ss_dssp GCC-TTHHHHGGG--SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------S--
T ss_pred CCCcchhhhHHHHHccCHHHHHHHHHHHHHhhhhHhhhccchHHHHHHHHHHHhhhhccccccc-------------ccc
Confidence 5789999999999999999999999999999999999999999999999999999988776542 112
Q ss_pred cccchhHHHHHHHHHHHhhcCCceeeee---eeccchhhHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHhhhc
Q 016890 140 CAIGFSGVIFSLIVIETSLSGAQSRSVF---GLFNIPAKWYPLILLVLFQVLMTNVSLLGHLCGILSGFAYTYGFFN 213 (381)
Q Consensus 140 ~~iG~Sg~ifall~~~~~~~p~~~~~if---g~~~Ip~~~~p~~ll~~~~ll~~~~s~~~hL~Gil~G~ly~~~~l~ 213 (381)
+.+|+||.+++++.+.....+..+.... ..+.++..++++.+... ..+++++.+|++|+++|+++++.+++
T Consensus 69 ~~~G~Sg~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~hl~G~~~G~~~~~~~~~ 142 (145)
T PF01694_consen 69 PYVGASGAVFGLLGAFLFLYPQNKKRLRFIYLALVVPIIVLVIILLLG---FIPNISFLGHLGGFLAGLLYGFLILR 142 (145)
T ss_dssp ---SSHHHHHHHHHHHHHHHHCCCCCS---HCCCCCCCCCCCHHHCTS---SSSTTTHHHHHHHHHHHHHHHHHHCH
T ss_pred ccCCCcccchHHHHHHHHHHhhccchhhcchHHHHHHHHHHHHHHHHH---HHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 6899999999999988877776643332 12222332222222211 15778999999999999999997665
No 9
>KOG2289 consensus Rhomboid family proteins [Signal transduction mechanisms]
Probab=99.60 E-value=1.8e-16 Score=151.12 Aligned_cols=135 Identities=22% Similarity=0.396 Sum_probs=103.0
Q ss_pred hhhcCCccchhchhhhccccHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccc
Q 016890 57 AVISRFQVYRFYTSIVFHGSLLHVLFNMLALVPLGSELERIMGSVRMFYITILLATSNAILHLLIALLVAHIPFYRLQNV 136 (381)
Q Consensus 57 ~i~~~~q~WRL~Ts~f~H~~~~hllfN~~~L~~~g~~LE~~~Gs~~~l~l~ll~~i~~~l~~~l~~~~~~~~~~~~~~~~ 136 (381)
...++.|+||++||+|+|+++.|+++||+.+..+|..||..+|..|+..+|+++++.++++.+++.
T Consensus 112 ~~~~r~E~WRllTym~LHaGi~HL~~N~~~ql~iGi~LE~~~G~~RiglIYl~gg~aGSlls~l~d-------------- 177 (316)
T KOG2289|consen 112 KPVHRGELWRLLTYMWLHAGIFHLLLNMLSQLFIGIPLEQVHGFLRIGLIYLAGGVAGSLLSSLFD-------------- 177 (316)
T ss_pred ChhhhchhHHHHHHHHHhcCHHHHHHHHHHHHhccccHHhhcCceEEeeehhhhhhhhHHHHHHhc--------------
Confidence 344689999999999999999999999999999999999999999999999999999999988764
Q ss_pred ccccccchhHHHHHHHHHHHhhc-CCceeeeeeeccchhh-HHHHHHHHHHHH---hhcchhHHHHHHHHHHHHHHHHh
Q 016890 137 MDECAIGFSGVIFSLIVIETSLS-GAQSRSVFGLFNIPAK-WYPLILLVLFQV---LMTNVSLLGHLCGILSGFAYTYG 210 (381)
Q Consensus 137 ~~~~~iG~Sg~ifall~~~~~~~-p~~~~~ifg~~~Ip~~-~~p~~ll~~~~l---l~~~~s~~~hL~Gil~G~ly~~~ 210 (381)
++...+|+||.+||+++++.... .+.+. + .=+.. ....++++++.+ +.+.++.++|++|++.|..++|.
T Consensus 178 ~~~~sVGASggvfaLlgA~Ls~l~~Nw~~--m---~~~~~~l~~ll~Ii~i~l~~G~~~~~~~~~h~gg~~~G~~~~fi 251 (316)
T KOG2289|consen 178 PNSISVGASGGVFALLGAHLSNLLTNWTI--M---KNKFAALRTLLIIIFINLDLGFAPYVDNFAHIGGLLAGFLLGFV 251 (316)
T ss_pred cCCceecccHHHHHHHHHHHHHHHhhHHH--h---cchHHHHHHHHHHHHHHHhhccccceeccccccccCCCcchhHH
Confidence 46779999999999998765432 11111 1 11111 111222212222 23567889999999999999884
No 10
>KOG2290 consensus Rhomboid family proteins [Signal transduction mechanisms]
Probab=99.15 E-value=2.1e-11 Score=118.76 Aligned_cols=140 Identities=17% Similarity=0.259 Sum_probs=100.9
Q ss_pred CCccchhchhhhccccHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccc
Q 016890 61 RFQVYRFYTSIVFHGSLLHVLFNMLALVPLGSELERIMGSVRMFYITILLATSNAILHLLIALLVAHIPFYRLQNVMDEC 140 (381)
Q Consensus 61 ~~q~WRL~Ts~f~H~~~~hllfN~~~L~~~g~~LE~~~Gs~~~l~l~ll~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~~ 140 (381)
+.|+|||+|+.|+|++.+|++..+.+.+.+.+.+|+..|+.|.+++|+++|+.+++.+.++. .+.+
T Consensus 448 PdQfYRL~~SLFlHagviH~~vSi~FQm~vmrdlEkL~g~~riAIiy~~SGitGNLASAIFl--------------pY~~ 513 (652)
T KOG2290|consen 448 PDQFYRLWLSLFLHAGVIHLLVSICFQMTVMRDLEKLAGWHRIAIIYFLSGITGNLASAIFL--------------PYRA 513 (652)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhcchhhheeeecccccccchheeee--------------cccc
Confidence 67999999999999999999999999999999999999999999999999999999765542 3466
Q ss_pred ccchhHHHHHHHHHHHhhcCCceeeeeee-ccchhhHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHhhhcccC
Q 016890 141 AIGFSGVIFSLIVIETSLSGAQSRSVFGL-FNIPAKWYPLILLVLFQVLMTNVSLLGHLCGILSGFAYTYGFFNLLM 216 (381)
Q Consensus 141 ~iG~Sg~ifall~~~~~~~p~~~~~ifg~-~~Ip~~~~p~~ll~~~~ll~~~~s~~~hL~Gil~G~ly~~~~l~~~~ 216 (381)
.+|.+|.-+|++.......-+ .+.+..- ...-.+++..++.+.+ -+.|.++.++|+.|.+.|.+..+.++-.+.
T Consensus 514 eVgPa~sQ~Gila~l~vEl~q-s~~il~~~w~a~~~Lia~~L~L~i-GliPWiDN~aHlfG~i~GLl~s~~~~PYi~ 588 (652)
T KOG2290|consen 514 EVGPAGSQFGILACLFVELFQ-SWQILERPWRAFFHLIATLLVLCI-GLIPWIDNWAHLFGTIFGLLTSIIFLPYID 588 (652)
T ss_pred ccCCcccccchHHHHHHHHHh-hhHhhhhHHHHHHHHHHHHHHHHh-ccccchhhHHHHHHHHHHHHHHHHhhcccc
Confidence 788888888876533221111 1111100 0000122222222222 355899999999999999999887665544
No 11
>KOG2890 consensus Predicted membrane protein [Function unknown]
Probab=98.93 E-value=1.2e-08 Score=95.64 Aligned_cols=193 Identities=18% Similarity=0.195 Sum_probs=119.5
Q ss_pred hccchHHHHHHHHHHHHHHHHHHHhcccccchheecchhhhcC----CccchhchhhhccccHHHHHHHHHHHHHHHHHH
Q 016890 19 WESIPFFTSAVVIVCGTIYLICLLFGYDSFYEICFLPSAVISR----FQVYRFYTSIVFHGSLLHVLFNMLALVPLGSEL 94 (381)
Q Consensus 19 ~~~~P~vTr~ll~~~v~v~ll~~~~~~~~~~~~~~~p~~i~~~----~q~WRL~Ts~f~H~~~~hllfN~~~L~~~g~~L 94 (381)
..+.-.+.+.++.+.+..++.... +. ...+...|...+-+ ..+|+++|+.|+..+.+.++.|+..+...|+.+
T Consensus 21 l~n~~vvvs~ic~~tlf~yi~sf~-~~--t~~l~~~p~y~lvp~~~~~~~WtliTs~fie~~vw~V~~sv~~L~v~G~~l 97 (326)
T KOG2890|consen 21 LLNLEVVVSAICVLTLFGYILSFG-NF--TILLATLPGYQLVPNALFFFPWTLITSGFIELNVWDVLVSVLTLSVGGKFL 97 (326)
T ss_pred hhhchhHHHHHHHHHHHHHHHHHH-Hh--HHHHHhccccccCCcchhhhhHHHHhcchhhhhHHHHHHHHHheeecceee
Confidence 334344555555555555554433 11 11222333322222 479999999999999999999999999999999
Q ss_pred HHhhChHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccchhHHHHHHHHHHHhhcCCceeeeeeeccchh
Q 016890 95 ERIMGSVRMFYITILLATSNAILHLLIALLVAHIPFYRLQNVMDECAIGFSGVIFSLIVIETSLSGAQSRSVFGLFNIPA 174 (381)
Q Consensus 95 E~~~Gs~~~l~l~ll~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~~~iG~Sg~ifall~~~~~~~p~~~~~ifg~~~Ip~ 174 (381)
|+.||+.+++.++.+.....+++..+.+.+..+ ......+...+..|..|++.|+++++-+..|+..+.-...-.+..
T Consensus 98 Ep~Wg~~e~lkff~ivn~~~~l~v~v~~~l~Y~--it~n~v~L~~~i~G~~gilaGilVa~kQllpd~~il~~~~~r~~~ 175 (326)
T KOG2890|consen 98 EPNWGSLELLKFFAIVNGSTTLVVLVPALLLYM--ITDNHVYLYIPIHGTTGILAGILVAWKQLLPDTIILELKSGRFLY 175 (326)
T ss_pred ccCCCCHHHHHHHHHhhchhHHHHHHHHHHHHH--HhcCceEEEEEeccchHHHHHHHHHHHHHcCceeEEeccchhhhh
Confidence 999999999988887766666655544433322 122222345568999999999999999999987543322223333
Q ss_pred hHHHHHHHHHHHHhhc-chhHHHHHHHHHHHHHHHHhhhcccC
Q 016890 175 KWYPLILLVLFQVLMT-NVSLLGHLCGILSGFAYTYGFFNLLM 216 (381)
Q Consensus 175 ~~~p~~ll~~~~ll~~-~~s~~~hL~Gil~G~ly~~~~l~~~~ 216 (381)
+.+|+..+++..++.- .-.....+.-+..|....|.|++...
T Consensus 176 ~~lP~~~l~~~~il~i~~f~~f~~l~s~~~g~~~sWtYLRfyq 218 (326)
T KOG2890|consen 176 AHLPLLVLFLSLILSIITFLVFASLPSITFGVLVSWTYLRFYQ 218 (326)
T ss_pred hhCCHHHHHHHHHHHHHHHHHhhhhHHHHHhhhhhhhhheecc
Confidence 4467655544332211 11233444445555555565555444
No 12
>KOG4463 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.89 E-value=3e-09 Score=97.39 Aligned_cols=130 Identities=18% Similarity=0.245 Sum_probs=97.7
Q ss_pred cchHHHHHHHHHHHHHHHHHHHhcccccchheecchhhhcCCccchhchhhhccccHHHHHHHHHHHHHHHHHHHHhhCh
Q 016890 21 SIPFFTSAVVIVCGTIYLICLLFGYDSFYEICFLPSAVISRFQVYRFYTSIVFHGSLLHVLFNMLALVPLGSELERIMGS 100 (381)
Q Consensus 21 ~~P~vTr~ll~~~v~v~ll~~~~~~~~~~~~~~~p~~i~~~~q~WRL~Ts~f~H~~~~hllfN~~~L~~~g~~LE~~~Gs 100 (381)
+.| |||.+++...++.++..+.+..+...+.+.+. ..+++|+|||+-+.|...+-..+++-++.+|.+ +.+||..|+
T Consensus 10 nmp-VTK~~~iT~~~~~vvagI~~~k~~f~l~y~~~-l~~y~qywrlL~~qF~~~n~~e~~~~l~I~Y~f-R~~ERlLGS 86 (323)
T KOG4463|consen 10 NMP-VTKAFVITSALFTVVAGIQGRKSKFGLSYQDI-LEKYFQYWRLLMSQFAFSNTPELMFGLYILYYF-RVFERLLGS 86 (323)
T ss_pred ccc-hHHHHHHHHHHHHHHHHhhhcccccccchhHH-HHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHH-HHHHHHhcc
Confidence 445 99999988888777766655555444444443 224699999999999999999999999998888 999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccchhHHHHHHHHHHHhhcC
Q 016890 101 VRMFYITILLATSNAILHLLIALLVAHIPFYRLQNVMDECAIGFSGVIFSLIVIETSLSG 160 (381)
Q Consensus 101 ~~~l~l~ll~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~~~iG~Sg~ifall~~~~~~~p 160 (381)
.||..+++++++.+.++..++..++.. +. .+.-.++..|++|+..+-+-...|
T Consensus 87 hky~~fiv~s~~~~~l~~~il~~l~~~--~~-----~nl~~~qp~~liFa~~~~~y~~ip 139 (323)
T KOG4463|consen 87 HKYSVFIVFSGTVSLLLEVILLSLLKD--TT-----ANLLTSQPYGLIFASFIPFYLDIP 139 (323)
T ss_pred ccceeehhHHHHHHHHHHHHHHHHHHH--HH-----hhhhhcCCCceeeeeccceEEEec
Confidence 999999999999998888777766542 12 234455666788887754444444
No 13
>PF08551 DUF1751: Eukaryotic integral membrane protein (DUF1751); InterPro: IPR013861 This entry is found in eukaryotic integral membrane proteins. Q12239 from SWISSPROT, a Saccharomyces cerevisiae (Baker's yeast) protein, has been shown to localise COP II vesicles [].
Probab=98.86 E-value=2.8e-09 Score=85.95 Aligned_cols=90 Identities=22% Similarity=0.348 Sum_probs=74.3
Q ss_pred ccchhchhhhccccHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccccc
Q 016890 63 QVYRFYTSIVFHGSLLHVLFNMLALVPLGSELERIMGSVRMFYITILLATSNAILHLLIALLVAHIPFYRLQNVMDECAI 142 (381)
Q Consensus 63 q~WRL~Ts~f~H~~~~hllfN~~~L~~~g~~LE~~~Gs~~~l~l~ll~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~~~i 142 (381)
.+|+++|+.|++.++..+++|.+.++..|+.+|+.||+++++.++.+.+++++++..+...+... ...+..+...+..
T Consensus 7 ~pWtl~T~~fve~~i~~~l~~~~~l~~~g~~lE~~WGs~E~lkFi~vv~~~tnl~~~~~~~~~y~--i~~~~~~l~~~i~ 84 (99)
T PF08551_consen 7 YPWTLFTAGFVETNIIGLLFSLLTLFYGGRYLEPIWGSREFLKFILVVNVITNLLTFLLYLLLYA--ITGNESYLFVPIS 84 (99)
T ss_pred ehHHHHHHHHHHhHHHHHHHHHHHHHHhhHHHHHhcChHHHHHHHHHHHHHhHHHHHHHHHHHHH--HhCCCceeEEEec
Confidence 79999999999999999999999999999999999999999999999999999988777655543 1122222336778
Q ss_pred chhHHHHHHHHH
Q 016890 143 GFSGVIFSLIVI 154 (381)
Q Consensus 143 G~Sg~ifall~~ 154 (381)
|..|++.|++++
T Consensus 85 G~~~~~~g~lVa 96 (99)
T PF08551_consen 85 GFMGVLAGFLVA 96 (99)
T ss_pred CcHHhHhheEEE
Confidence 888888887654
No 14
>KOG2980 consensus Integral membrane protease of the rhomboid family involved in different forms of regulated intramembrane proteolysis [Signal transduction mechanisms]
Probab=98.32 E-value=5e-07 Score=85.08 Aligned_cols=190 Identities=15% Similarity=0.219 Sum_probs=124.9
Q ss_pred hhhHH-HHHhccchHHHHHHHHHHHHHHHHHHHhcccccchheecchhhhcCCccchhchhhhccccHHHHHHHHHHHHH
Q 016890 11 LSTRA-NQWWESIPFFTSAVVIVCGTIYLICLLFGYDSFYEICFLPSAVISRFQVYRFYTSIVFHGSLLHVLFNMLALVP 89 (381)
Q Consensus 11 ~~~~~-~~~~~~~P~vTr~ll~~~v~v~ll~~~~~~~~~~~~~~~p~~i~~~~q~WRL~Ts~f~H~~~~hllfN~~~L~~ 89 (381)
+..++ +.|.+-.|-+...++++++.+|.++............+..+. ..+.-.|.++++.|-|-+.+|+--||+.+..
T Consensus 102 F~~~~~k~w~~~~~g~v~~ll~~n~~vf~lWrv~~~~~~~~~~mls~~-~~~t~~w~i~~s~Fsh~~a~h~g~~~~~~~~ 180 (310)
T KOG2980|consen 102 FQKRGWKHWISGANGVVFGLLIANAFVFTLWRVPQKQFTMIPWMLSRN-AYKTGCWKIILSTFSHYSALHLGPNMLVLKS 180 (310)
T ss_pred ceecchHHHhhcCCcchhHHHHHHHHHHHHHHhcchhhhhhhHHhhcc-cccccceeEEeehhcchhHhhhcHHHHHHHH
Confidence 33444 345555677677788999999988877322111111111111 2355688899999999999999999998888
Q ss_pred HHH-HHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccchhHHHHHHHHHHHhhcCCceeeeee
Q 016890 90 LGS-ELERIMGSVRMFYITILLATSNAILHLLIALLVAHIPFYRLQNVMDECAIGFSGVIFSLIVIETSLSGAQSRSVFG 168 (381)
Q Consensus 90 ~g~-~LE~~~Gs~~~l~l~ll~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~~~iG~Sg~ifall~~~~~~~p~~~~~ifg 168 (381)
+.. .+-...|...+..+|+..+..+..+. ... .....+..+..|+||.+++++.+.+.++|+.+..+.+
T Consensus 181 y~~~a~~~~~~~~~~~AlylSa~~~~~~i~-~~~---------~v~~~~~gp~LGAsGav~ai~a~~~~lfP~~~~~i~f 250 (310)
T KOG2980|consen 181 YLAGALKGSLGFSSFFALYLSAGVKGLFIS-VKD---------KVPTSWAGPSLGASGAVYAILALDCTLFPKTTLYILF 250 (310)
T ss_pred HhcccccCCcchhhcccceeccccccceeE-eec---------cccccccccccccchHHHHHHHHHhhcCcCcceeEEE
Confidence 876 66666777777777764433333221 111 0112245778999999999999999999999888888
Q ss_pred eccchhhHH-HHHHHHHHH---Hhh--cchhHHHHHHHHHHHHHHHHhh
Q 016890 169 LFNIPAKWY-PLILLVLFQ---VLM--TNVSLLGHLCGILSGFAYTYGF 211 (381)
Q Consensus 169 ~~~Ip~~~~-p~~ll~~~~---ll~--~~~s~~~hL~Gil~G~ly~~~~ 211 (381)
++++|.-.. ++-++.... +.. ..-+..+|++|-+.|..++...
T Consensus 251 ~~~v~~ga~~~~~~i~~~~~a~~~l~~~~~n~~Ah~~gsl~Gv~va~~~ 299 (310)
T KOG2980|consen 251 VFPVPAGAGLAFKAIAAYDFAGLILGWGFFNHAAHLSGSLFGVVVATYL 299 (310)
T ss_pred eecccccchhHHHHHHHhhhcceeeccccchhHhhhcchHHHHHHHHHH
Confidence 888887433 222222111 111 2346669999999999988743
No 15
>smart00553 SEP Domain present in Saccharomyces cerevisiae Shp1, Drosophila melanogaster eyes closed gene (eyc), and vertebrate p47.
Probab=56.88 E-value=7.5 Score=30.87 Aligned_cols=15 Identities=33% Similarity=0.614 Sum_probs=12.9
Q ss_pred CCCCcCCccccCCCC
Q 016890 291 SRFPGRGRTLSSSQS 305 (381)
Q Consensus 291 ~~f~G~GrrLG~~~~ 305 (381)
..|.|.|||||+...
T Consensus 74 ~~F~G~G~~LGs~~p 88 (93)
T smart00553 74 KPFSGSGQKLGSPGP 88 (93)
T ss_pred cCCccCCccCCCCCC
Confidence 469999999998864
No 16
>KOG2086 consensus Protein tyrosine phosphatase SHP1/Cofactor for p97 ATPase-mediated vesicle membrane fusion [Nuclear structure]
Probab=45.69 E-value=16 Score=36.25 Aligned_cols=12 Identities=42% Similarity=0.781 Sum_probs=10.8
Q ss_pred CCCCcCCccccC
Q 016890 291 SRFPGRGRTLSS 302 (381)
Q Consensus 291 ~~f~G~GrrLG~ 302 (381)
..|.|.|||||+
T Consensus 256 ~pF~G~Gq~LGs 267 (380)
T KOG2086|consen 256 KPFSGEGQRLGS 267 (380)
T ss_pred CCCCCcCeecCC
Confidence 359999999998
No 17
>PF09527 ATPase_gene1: Putative F0F1-ATPase subunit (ATPase_gene1)
Probab=33.69 E-value=1.6e+02 Score=20.36 Aligned_cols=39 Identities=21% Similarity=0.279 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhChHH-HHHHHHHHHHHHHH
Q 016890 78 LHVLFNMLALVPLGSELERIMGSVR-MFYITILLATSNAI 116 (381)
Q Consensus 78 ~hllfN~~~L~~~g~~LE~~~Gs~~-~l~l~ll~~i~~~l 116 (381)
..++.+++.-+..|..+++.+++.. +....++.++++++
T Consensus 8 ~~~~~~i~~g~~~G~~lD~~~~t~p~~~~~g~llG~~~g~ 47 (55)
T PF09527_consen 8 FTMAAPILVGFFLGYWLDKWFGTSPWFTLIGLLLGIAAGF 47 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHH
Confidence 4677788888999999999999844 44444555555554
No 18
>PF14851 FAM176: FAM176 family
Probab=26.91 E-value=1.6e+02 Score=25.59 Aligned_cols=33 Identities=18% Similarity=0.120 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHH
Q 016890 80 VLFNMLALVPLGSELERIMGSVRMFYITILLATSNAILH 118 (381)
Q Consensus 80 llfN~~~L~~~g~~LE~~~Gs~~~l~l~ll~~i~~~l~~ 118 (381)
++-|.+..|.+- .....-+.+|++++|+.+|+.
T Consensus 4 llSnsLaaya~I------~~~PE~~aLYFv~gVC~GLlL 36 (153)
T PF14851_consen 4 LLSNSLAAYAHI------RDNPERFALYFVSGVCAGLLL 36 (153)
T ss_pred HHHHHHHHHHHH------HhChHHHHHHHHHHHHHHHHH
Confidence 455655555543 344455678888888777653
No 19
>PF13105 DUF3959: Protein of unknown function (DUF3959)
Probab=22.75 E-value=5.7e+02 Score=23.03 Aligned_cols=21 Identities=33% Similarity=0.610 Sum_probs=11.9
Q ss_pred hhhHHHHHhccchHHHHHHHH
Q 016890 11 LSTRANQWWESIPFFTSAVVI 31 (381)
Q Consensus 11 ~~~~~~~~~~~~P~vTr~ll~ 31 (381)
+-+|+-+|+...|.+|..+++
T Consensus 41 ~ySRiCSWiAYapFITlLl~I 61 (239)
T PF13105_consen 41 IYSRICSWIAYAPFITLLLVI 61 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344566666666666654444
Done!