Query 016890
Match_columns 381
No_of_seqs 260 out of 1446
Neff 7.7
Searched_HMMs 29240
Date Mon Mar 25 05:29:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016890.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016890hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xov_A Rhomboid protease GLPG; 99.9 8.1E-24 2.8E-28 188.4 19.2 172 21-213 2-180 (181)
2 2nr9_A Protein GLPG homolog; i 99.9 1E-23 3.5E-28 190.1 12.7 175 20-213 6-185 (196)
3 1s3s_G P47 protein; AAA ATPase 45.8 9.7 0.00033 30.7 2.1 15 291-305 8-22 (127)
4 1ss6_A P47, NSFL1 cofactor P47 41.2 13 0.00043 28.9 2.0 15 291-305 83-97 (102)
5 3bej_E Nuclear receptor coacti 22.7 23 0.00077 20.0 0.4 10 316-325 17-26 (26)
6 2v6x_B DOA4-independent degrad 14.2 37 0.0013 23.1 -0.0 10 308-317 38-47 (54)
7 2plx_B Peptide inhibitor; heli 7.8 66 0.0023 17.7 -0.4 15 306-320 9-23 (26)
8 3vr8_C Cytochrome B-large subu 6.6 5.6E+02 0.019 21.8 4.7 20 65-84 122-143 (188)
9 3kcu_A Probable formate transp 4.8 1.1E+03 0.039 21.0 5.9 23 67-89 197-219 (285)
10 1cwx_A Hepatitis C virus capsi 4.8 6.4E+02 0.022 16.2 2.9 15 289-303 19-33 (44)
No 1
>2xov_A Rhomboid protease GLPG; membrane protein, hydrolase, intramembrane protease; HET: BNG; 1.65A {Escherichia coli} PDB: 2ic8_A* 2nrf_A 2xtu_A* 2irv_A* 3b45_A* 2o7l_A* 2xow_A* 3txt_A* 2xtv_A* 3b44_A*
Probab=99.92 E-value=8.1e-24 Score=188.43 Aligned_cols=172 Identities=19% Similarity=0.312 Sum_probs=129.7
Q ss_pred cchHHHHHHHHHHHHHHHHHHHhcccc-cchheecchhhhcCCccchhchhhhccccHHHHHHHHHHHHHHHHHHHHhhC
Q 016890 21 SIPFFTSAVVIVCGTIYLICLLFGYDS-FYEICFLPSAVISRFQVYRFYTSIVFHGSLLHVLFNMLALVPLGSELERIMG 99 (381)
Q Consensus 21 ~~P~vTr~ll~~~v~v~ll~~~~~~~~-~~~~~~~p~~i~~~~q~WRL~Ts~f~H~~~~hllfN~~~L~~~g~~LE~~~G 99 (381)
+.||+|+.++++|+++|++..+.+... ...+.+.|.. ..++|+||++|+.|+|.++.|+++||+.++.+|+.+|+.+|
T Consensus 2 ~~~pvt~~li~~~v~vf~~~~~~~~~~~~~~~~~~p~~-~~~~~~wrl~T~~f~H~~~~Hl~~Nm~~l~~~g~~~E~~~G 80 (181)
T 2xov_A 2 RAGPVTWVMMIACVVVFIAMQILGDQEVMLWLAWPFDP-TLKFEFWRYFTHALMHFSLMHILFNLLWWWYLGGAVEKRLG 80 (181)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHSSCCSG-GGTTCTTHHHHGGGCCCSHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCcHHHHHHHHHHHHHHHHHHhCcHHHHHhhcCChhh-ccCCCCHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHhC
Confidence 458899999999999999987743221 3445566653 46799999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccchhHHHHHHHHHHH---hhcCCceeeeeeeccchhhH
Q 016890 100 SVRMFYITILLATSNAILHLLIALLVAHIPFYRLQNVMDECAIGFSGVIFSLIVIET---SLSGAQSRSVFGLFNIPAKW 176 (381)
Q Consensus 100 s~~~l~l~ll~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~~~iG~Sg~ifall~~~~---~~~p~~~~~ifg~~~Ip~~~ 176 (381)
+.|++.+|+++++.+++.+.++. ....+|+||++++++++.. ...|+.+.. ++.+...
T Consensus 81 ~~~fl~~yl~~~i~~~l~~~~~~---------------~~~~vGaSGai~gl~g~~~~~~~~~p~~~~~----l~~~~~~ 141 (181)
T 2xov_A 81 SGKLIVITLISALLSGYVQQKFS---------------GPWFGGLSGVVYALMGYVWLRGERDPQSGIY----LQRGLII 141 (181)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH---------------CSCCCCSHHHHHHHHHHHHHHHHHCGGGSCC----CCHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHhc---------------CCCceeHHHHHHHHHHHHHHHHhhCcCceee----eHHHHHH
Confidence 99999999999999999876542 1237899999999997553 345544321 1233322
Q ss_pred HHHHHHHHHHHhh---cchhHHHHHHHHHHHHHHHHhhhc
Q 016890 177 YPLILLVLFQVLM---TNVSLLGHLCGILSGFAYTYGFFN 213 (381)
Q Consensus 177 ~p~~ll~~~~ll~---~~~s~~~hL~Gil~G~ly~~~~l~ 213 (381)
+.. ..++..+.. +++++.+|++|+++|+++++.+.|
T Consensus 142 ~~~-~~~~~~~~~~~~~~v~~~aHlgG~l~G~l~~~~~~~ 180 (181)
T 2xov_A 142 FAL-IWIVAGWFDLFGMSMANGAHIAGLAVGLAMAFVDSL 180 (181)
T ss_dssp HHH-HHHHHHHTTSSCCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHH-HHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHhc
Confidence 211 112233332 589999999999999999885443
No 2
>2nr9_A Protein GLPG homolog; intramembrane peptidase, rhomboid protease, membrane protein; HET: PA6 PQE; 2.20A {Haemophilus influenzae} SCOP: f.51.1.1 PDB: 3odj_A
Probab=99.90 E-value=1e-23 Score=190.11 Aligned_cols=175 Identities=18% Similarity=0.287 Sum_probs=128.2
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHhcccc-cchheecchhhhcCCccchhchhhhccccHHHHHHHHHHHHHHHHHHHHhh
Q 016890 20 ESIPFFTSAVVIVCGTIYLICLLFGYDS-FYEICFLPSAVISRFQVYRFYTSIVFHGSLLHVLFNMLALVPLGSELERIM 98 (381)
Q Consensus 20 ~~~P~vTr~ll~~~v~v~ll~~~~~~~~-~~~~~~~p~~i~~~~q~WRL~Ts~f~H~~~~hllfN~~~L~~~g~~LE~~~ 98 (381)
.+.||+|+.++++|+++|++....+... ...+.+.|..+ .++|+||++|+.|+|.++.|+++||+.++.+|..+|+.+
T Consensus 6 ~~~~pvt~~li~~~v~vfll~~~~~~~~~~~~~~~~p~~~-~~~~~wrl~T~~flH~~~~Hl~~Nm~~l~~~G~~lE~~~ 84 (196)
T 2nr9_A 6 AQQGKITLILTALCVLIYIAQQLGFEDDIMYLMHYPAYEE-QDSEVWRYISHTLVHLSNLHILFNLSWFFIFGGMIERTF 84 (196)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHSCCCSGG-GGGCTTHHHHGGGCCSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccHHHHHHHHHHHHHHHHHHcCcHHHHHhhcCCHhhc-ccCCcHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3558899999999999999887643211 34556666654 678999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccchhHHHHHHHHHHHhhcCCceeeeeeeccchhhHHH
Q 016890 99 GSVRMFYITILLATSNAILHLLIALLVAHIPFYRLQNVMDECAIGFSGVIFSLIVIETSLSGAQSRSVFGLFNIPAKWYP 178 (381)
Q Consensus 99 Gs~~~l~l~ll~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~~~iG~Sg~ifall~~~~~~~p~~~~~ifg~~~Ip~~~~p 178 (381)
|+.|++.+|+++++.+++.++++. ....+|+||+++|++++.... +..+...+ .++.+...+.
T Consensus 85 G~~~~l~~yl~~~~~~~l~~~~~~---------------~~~~vGaSGai~gl~g~~~~~-~~~~~~~~-~~~~~~~~~~ 147 (196)
T 2nr9_A 85 GSVKLLMLYVVASAITGYVQNYVS---------------GPAFFGLSGVVYAVLGYVFIR-DKLNHHLF-DLPEGFFTML 147 (196)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHH---------------CSCCCCSHHHHHHHHHHHHHH-HHSSTTSC-CCCCSSTTTT
T ss_pred ChHHHHHHHHHHHHHHHHHHHHhc---------------CCCeeeHHHHHHHHHHHHHHH-HHhcchhh-cchHHHHHHH
Confidence 999999999999999999876542 123799999999999755432 11111111 1222222211
Q ss_pred HHHHHHHHHhh----cchhHHHHHHHHHHHHHHHHhhhc
Q 016890 179 LILLVLFQVLM----TNVSLLGHLCGILSGFAYTYGFFN 213 (381)
Q Consensus 179 ~~ll~~~~ll~----~~~s~~~hL~Gil~G~ly~~~~l~ 213 (381)
.+ .++..+.. +++++.+|++|+++|+++++.+.+
T Consensus 148 ~~-~~~~~~~~~~~~~~v~~~aHlgG~l~G~l~~~~~~~ 185 (196)
T 2nr9_A 148 LV-GIALGFISPLFGVEMGNAAHISGLIVGLIWGFIDSK 185 (196)
T ss_dssp TT-TTTHHHHSCSSCCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HH-HHHHHHHHhccCCCccHHHHHHHHHHHHHHHHHHHh
Confidence 11 11222333 379999999999999999986543
No 3
>1s3s_G P47 protein; AAA ATPase, protein-protein complex, UBX domain, protein binding; HET: ADP; 2.90A {Rattus norvegicus} SCOP: d.15.1.2 PDB: 1i42_A 1jru_A
Probab=45.76 E-value=9.7 Score=30.70 Aligned_cols=15 Identities=33% Similarity=0.669 Sum_probs=11.4
Q ss_pred CCCCcCCccccCCCC
Q 016890 291 SRFPGRGRTLSSSQS 305 (381)
Q Consensus 291 ~~f~G~GrrLG~~~~ 305 (381)
..|.|.|||||+...
T Consensus 8 ~~F~G~G~~Lgs~~p 22 (127)
T 1s3s_G 8 KAFTGEGQKLGSTAP 22 (127)
T ss_dssp --CCSCCCCCCSSCC
T ss_pred CCceecCeECCCCCC
Confidence 359999999998753
No 4
>1ss6_A P47, NSFL1 cofactor P47, P47 protein, P97; , SEP, signaling protein; NMR {Homo sapiens} SCOP: d.245.1.1
Probab=41.19 E-value=13 Score=28.94 Aligned_cols=15 Identities=33% Similarity=0.669 Sum_probs=12.4
Q ss_pred CCCCcCCccccCCCC
Q 016890 291 SRFPGRGRTLSSSQS 305 (381)
Q Consensus 291 ~~f~G~GrrLG~~~~ 305 (381)
..|.|.|||||+...
T Consensus 83 ~~F~G~G~~LGs~~p 97 (102)
T 1ss6_A 83 KAFTGEGQKLGSTAP 97 (102)
T ss_dssp TTSCSSSSSGGGCCS
T ss_pred cCCcccCeECCCCCC
Confidence 469999999998643
No 5
>3bej_E Nuclear receptor coactivator 1; FXR, BAR, NR1H4, bIle acid receptor, NHR, alternative splicing, DNA-binding, metal-binding nucleus, repressor; HET: MUF; 1.90A {Homo sapiens} PDB: 1fm9_B* 1k74_B* 1fm6_B* 1p8d_C* 1rdt_B* 1nrl_C* 3ipq_B* 3ips_C* 3ipu_C* 4dm6_E* 4dm8_C* 3kmg_B* 2hfp_B* 1k7l_B*
Probab=22.73 E-value=23 Score=19.96 Aligned_cols=10 Identities=50% Similarity=0.820 Sum_probs=7.4
Q ss_pred hcccCCCCCC
Q 016890 316 RLLDNSSPEN 325 (381)
Q Consensus 316 ~~~~~~~~~~ 325 (381)
|||+|++|.|
T Consensus 17 rLLQ~~sP~d 26 (26)
T 3bej_E 17 RLLQEGSPSX 26 (26)
T ss_pred HHHHcCCCCC
Confidence 7888887754
No 6
>2v6x_B DOA4-independent degradation protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=14.24 E-value=37 Score=23.09 Aligned_cols=10 Identities=60% Similarity=0.820 Sum_probs=8.4
Q ss_pred CCccchhhhc
Q 016890 308 HVDSNLQARL 317 (381)
Q Consensus 308 ~~~~~~~~~~ 317 (381)
..|+.|||||
T Consensus 38 ~~ddDLQARL 47 (54)
T 2v6x_B 38 NPDDDLQARL 47 (54)
T ss_dssp -CCHHHHHHH
T ss_pred CchHHHHHHH
Confidence 4689999999
No 7
>2plx_B Peptide inhibitor; helix-turn-helix, hydrolase; HET: FLC; 1.56A {Bos taurus}
Probab=7.79 E-value=66 Score=17.72 Aligned_cols=15 Identities=40% Similarity=0.492 Sum_probs=10.7
Q ss_pred CCCCccchhhhcccC
Q 016890 306 PVHVDSNLQARLLDN 320 (381)
Q Consensus 306 ~~~~~~~~~~~~~~~ 320 (381)
++||+++|-.|-|||
T Consensus 9 qrhsspellrrcldn 23 (26)
T 2plx_B 9 QRHSSPELLRRCLDN 23 (26)
T ss_dssp BCCCCHHHHHHHHHH
T ss_pred hhcCCHHHHHHHHhc
Confidence 457888887777664
No 8
>3vr8_C Cytochrome B-large subunit; membrane protein, reductase, mitochondria MEMB oxidoreductase; HET: FAD HEM RQX EPH; 2.81A {Ascaris suum} PDB: 3vrb_C*
Probab=6.63 E-value=5.6e+02 Score=21.75 Aligned_cols=20 Identities=25% Similarity=0.506 Sum_probs=13.2
Q ss_pred chhchhhhcc--ccHHHHHHHH
Q 016890 65 YRFYTSIVFH--GSLLHVLFNM 84 (381)
Q Consensus 65 WRL~Ts~f~H--~~~~hllfN~ 84 (381)
|-+....++| .++=|++.++
T Consensus 122 ~~l~~a~~yH~~nGIRHLiwD~ 143 (188)
T 3vr8_C 122 FIIAFPIAFHTLNGIRFIGFDM 143 (188)
T ss_pred HHHHHHHHHHHHhhHHHHHHHh
Confidence 3444556666 5778888885
No 9
>3kcu_A Probable formate transporter 1; TCDB ID 2.A.44.1.1, channel, cell inner membrane, cell membrane, membrane, transmembrane; HET: MA5; 2.24A {Escherichia coli O157} PDB: 3kcv_A 3q7k_A
Probab=4.83 E-value=1.1e+03 Score=21.04 Aligned_cols=23 Identities=13% Similarity=0.225 Sum_probs=18.0
Q ss_pred hchhhhccccHHHHHHHHHHHHH
Q 016890 67 FYTSIVFHGSLLHVLFNMLALVP 89 (381)
Q Consensus 67 L~Ts~f~H~~~~hllfN~~~L~~ 89 (381)
+.+..|+-.++-|.+-||+.+..
T Consensus 197 ~pi~~Fv~~GfEH~VANm~~ip~ 219 (285)
T 3kcu_A 197 LPVAMFVASGFEHSIANMFMIPM 219 (285)
T ss_dssp HHHHHHHHTTCCCHHHHHHHHHH
T ss_pred HHHHHHHHcCcchhhhhHHHHHH
Confidence 34677888899999999987643
No 10
>1cwx_A Hepatitis C virus capsid protein; helix-loop-helix, viral protein; NMR {Synthetic} SCOP: j.54.1.1 PDB: 1xcq_P 1xct_P 1xf5_P
Probab=4.77 E-value=6.4e+02 Score=16.18 Aligned_cols=15 Identities=40% Similarity=0.853 Sum_probs=10.9
Q ss_pred CCCCCCcCCccccCC
Q 016890 289 QDSRFPGRGRTLSSS 303 (381)
Q Consensus 289 ~~~~f~G~GrrLG~~ 303 (381)
.+..|+|.|+..++-
T Consensus 19 ~~fqfPGGg~i~~gf 33 (44)
T 1cwx_A 19 QDVKFPGGGQIVGGV 33 (44)
T ss_dssp TTTTCCSSCCSSSSS
T ss_pred eeeEcCCCCeEEEEE
Confidence 345699998877764
Done!