Query 016891
Match_columns 381
No_of_seqs 140 out of 1550
Neff 9.6
Searched_HMMs 46136
Date Fri Mar 29 03:44:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016891.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016891hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01640 F_box_assoc_1 F-box 100.0 1.3E-32 2.9E-37 243.6 26.4 220 105-336 1-230 (230)
2 PF07734 FBA_1: F-box associat 99.7 9.3E-15 2E-19 122.0 18.7 148 204-361 1-164 (164)
3 PLN03215 ascorbic acid mannose 99.6 1.9E-12 4.1E-17 119.2 26.2 316 2-362 5-372 (373)
4 PF08268 FBA_3: F-box associat 99.5 6.1E-13 1.3E-17 106.5 14.5 106 204-313 1-118 (129)
5 KOG4441 Proteins containing BT 99.4 3.3E-11 7.2E-16 119.4 19.0 199 119-343 349-553 (571)
6 PHA02713 hypothetical protein; 99.4 1E-10 2.3E-15 116.2 21.2 224 120-370 273-523 (557)
7 PHA02713 hypothetical protein; 99.3 2.1E-10 4.7E-15 114.0 21.7 197 119-343 320-540 (557)
8 KOG4441 Proteins containing BT 99.3 3.2E-10 6.8E-15 112.5 20.2 224 119-370 301-533 (571)
9 PHA02790 Kelch-like protein; P 99.2 2.4E-09 5.1E-14 104.9 21.4 187 119-338 287-474 (480)
10 PHA03098 kelch-like protein; P 99.2 1.8E-09 3.9E-14 107.6 20.9 199 119-343 311-518 (534)
11 PLN02153 epithiospecifier prot 99.1 8.1E-08 1.8E-12 90.2 25.6 211 119-344 50-292 (341)
12 TIGR03548 mutarot_permut cycli 99.1 4.6E-08 1E-12 91.1 23.4 230 120-372 40-316 (323)
13 TIGR03547 muta_rot_YjhT mutatr 99.1 5.8E-08 1.3E-12 91.4 23.6 233 119-370 29-332 (346)
14 PLN02193 nitrile-specifier pro 99.0 2.1E-07 4.6E-12 91.0 23.3 212 119-345 193-419 (470)
15 PRK14131 N-acetylneuraminic ac 98.9 3.6E-07 7.8E-12 86.9 22.8 244 107-368 36-352 (376)
16 PF12937 F-box-like: F-box-lik 98.9 1.9E-10 4.1E-15 74.4 0.2 43 1-43 1-43 (47)
17 PHA02790 Kelch-like protein; P 98.9 9.2E-08 2E-12 93.8 17.8 167 175-369 287-456 (480)
18 PLN02153 epithiospecifier prot 98.8 1.2E-06 2.5E-11 82.4 21.7 182 175-367 50-259 (341)
19 PLN02193 nitrile-specifier pro 98.8 2.7E-06 5.8E-11 83.3 23.4 227 120-368 138-386 (470)
20 PHA03098 kelch-like protein; P 98.8 4.9E-07 1.1E-11 90.2 18.6 159 119-292 358-523 (534)
21 PF00646 F-box: F-box domain; 98.7 1.4E-09 3.1E-14 70.7 -1.2 43 2-44 4-46 (48)
22 PRK14131 N-acetylneuraminic ac 98.7 1.5E-05 3.3E-10 75.8 25.7 156 175-338 189-372 (376)
23 smart00256 FBOX A Receptor for 98.6 2.9E-09 6.4E-14 66.6 -0.9 39 4-42 1-39 (41)
24 TIGR03547 muta_rot_YjhT mutatr 98.6 1.6E-05 3.5E-10 74.8 23.6 135 175-314 168-328 (346)
25 TIGR03548 mutarot_permut cycli 98.5 1.7E-05 3.7E-10 73.9 19.8 139 119-270 88-233 (323)
26 KOG4693 Uncharacterized conser 98.1 0.00013 2.9E-09 63.2 13.3 221 117-349 42-289 (392)
27 KOG1230 Protein containing rep 98.0 0.00039 8.4E-09 64.0 15.8 216 119-348 98-352 (521)
28 KOG0379 Kelch repeat-containin 97.9 0.003 6.5E-08 62.0 21.1 212 120-347 89-312 (482)
29 KOG4693 Uncharacterized conser 97.8 0.00084 1.8E-08 58.4 13.2 132 175-313 157-308 (392)
30 KOG0379 Kelch repeat-containin 97.7 0.002 4.3E-08 63.3 17.3 182 176-369 89-285 (482)
31 KOG0281 Beta-TrCP (transducin 97.6 0.00036 7.8E-09 62.7 8.7 43 1-43 75-121 (499)
32 KOG2120 SCF ubiquitin ligase, 97.1 0.0001 2.2E-09 65.4 -0.7 40 2-41 99-138 (419)
33 KOG2997 F-box protein FBX9 [Ge 96.6 0.00047 1E-08 61.4 -0.1 46 1-46 107-157 (366)
34 KOG1230 Protein containing rep 96.5 0.18 4E-06 47.0 15.3 164 175-344 98-288 (521)
35 PF13964 Kelch_6: Kelch motif 96.4 0.0063 1.4E-07 39.4 4.4 41 203-243 6-47 (50)
36 PF01344 Kelch_1: Kelch motif; 96.2 0.012 2.7E-07 37.3 4.7 41 203-243 6-47 (47)
37 KOG0274 Cdc4 and related F-box 95.2 2.7 5.8E-05 42.0 18.8 42 1-42 108-149 (537)
38 KOG2055 WD40 repeat protein [G 94.9 3.3 7.2E-05 39.3 17.1 100 226-343 281-381 (514)
39 PF07646 Kelch_2: Kelch motif; 94.8 0.081 1.7E-06 33.9 4.9 40 203-242 6-47 (49)
40 PF02191 OLF: Olfactomedin-lik 94.7 2.3 5E-05 37.9 15.4 124 203-346 73-213 (250)
41 PF13360 PQQ_2: PQQ-like domai 93.7 4.3 9.3E-05 35.3 17.9 188 108-338 35-234 (238)
42 PF07250 Glyoxal_oxid_N: Glyox 93.7 1.6 3.5E-05 38.6 12.1 165 175-363 46-222 (243)
43 smart00284 OLF Olfactomedin-li 93.6 5.1 0.00011 35.7 16.0 124 203-346 78-218 (255)
44 PF08450 SGL: SMP-30/Gluconola 93.3 5.5 0.00012 35.2 22.8 201 106-346 8-223 (246)
45 KOG4152 Host cell transcriptio 92.8 2.8 6E-05 40.6 12.7 161 119-288 57-246 (830)
46 PF07893 DUF1668: Protein of u 92.4 9.4 0.0002 35.8 16.0 153 104-270 71-253 (342)
47 COG3055 Uncharacterized protei 92.2 1.7 3.7E-05 40.1 10.2 188 175-373 113-363 (381)
48 PF13418 Kelch_4: Galactose ox 92.0 0.25 5.3E-06 31.5 3.5 38 203-240 6-44 (49)
49 TIGR02658 TTQ_MADH_Hv methylam 91.9 6.2 0.00013 37.1 14.0 117 207-343 204-338 (352)
50 PF13964 Kelch_6: Kelch motif 91.6 0.35 7.6E-06 31.0 3.9 22 118-139 27-48 (50)
51 PF01344 Kelch_1: Kelch motif; 91.2 0.52 1.1E-05 29.6 4.4 35 160-195 13-47 (47)
52 TIGR01640 F_box_assoc_1 F-box 90.4 11 0.00025 32.8 14.6 125 206-347 3-138 (230)
53 smart00612 Kelch Kelch domain. 89.0 0.66 1.4E-05 28.7 3.6 21 175-196 15-35 (47)
54 PF07893 DUF1668: Protein of u 87.5 15 0.00032 34.5 12.9 87 176-270 200-298 (342)
55 PF02897 Peptidase_S9_N: Proly 87.0 29 0.00064 33.2 21.1 153 175-344 252-412 (414)
56 smart00612 Kelch Kelch domain. 86.7 2.1 4.5E-05 26.4 4.9 33 211-244 2-35 (47)
57 PLN02772 guanylate kinase 86.6 4.2 9E-05 38.6 8.6 74 203-281 29-106 (398)
58 PF13418 Kelch_4: Galactose ox 86.5 1.6 3.5E-05 27.6 4.2 35 160-195 14-48 (49)
59 PF08450 SGL: SMP-30/Gluconola 86.2 23 0.00049 31.2 14.7 115 208-343 11-129 (246)
60 PF06433 Me-amine-dh_H: Methyl 86.2 7.2 0.00016 36.1 9.7 119 203-338 188-324 (342)
61 COG3055 Uncharacterized protei 86.0 30 0.00064 32.3 17.9 134 175-314 196-356 (381)
62 COG4257 Vgb Streptogramin lyas 85.2 16 0.00034 32.9 10.7 126 101-246 191-318 (353)
63 PF05096 Glu_cyclase_2: Glutam 83.9 32 0.00069 30.8 12.6 114 207-346 54-168 (264)
64 PF07762 DUF1618: Protein of u 83.5 10 0.00023 29.8 8.6 66 226-291 7-97 (131)
65 PF13415 Kelch_3: Galactose ox 82.9 2.9 6.3E-05 26.5 4.2 38 208-245 1-40 (49)
66 TIGR02658 TTQ_MADH_Hv methylam 81.4 47 0.001 31.2 13.2 105 226-346 28-147 (352)
67 PRK11138 outer membrane biogen 81.0 52 0.0011 31.3 18.7 107 108-238 119-230 (394)
68 PF10282 Lactonase: Lactonase, 80.9 49 0.0011 30.9 16.6 117 208-345 154-286 (345)
69 PRK11138 outer membrane biogen 80.0 57 0.0012 31.1 18.4 30 203-239 251-282 (394)
70 KOG4341 F-box protein containi 78.5 0.52 1.1E-05 44.4 -0.7 37 3-39 74-110 (483)
71 PF10282 Lactonase: Lactonase, 78.0 60 0.0013 30.3 25.0 149 175-344 166-332 (345)
72 PRK11028 6-phosphogluconolacto 77.2 60 0.0013 29.9 17.7 144 175-343 57-214 (330)
73 PF07646 Kelch_2: Kelch motif; 75.4 6.3 0.00014 24.9 4.0 37 254-290 5-48 (49)
74 PF05096 Glu_cyclase_2: Glutam 73.9 67 0.0015 28.8 16.0 136 174-343 67-210 (264)
75 TIGR03866 PQQ_ABC_repeats PQQ- 73.7 65 0.0014 28.5 13.0 92 226-338 12-107 (300)
76 PF13415 Kelch_3: Galactose ox 71.5 8.3 0.00018 24.3 3.9 22 119-140 19-40 (49)
77 PRK05137 tolB translocation pr 71.3 1E+02 0.0022 29.8 13.7 121 206-343 163-285 (435)
78 KOG0294 WD40 repeat-containing 69.8 91 0.002 28.6 11.9 94 203-313 47-144 (362)
79 TIGR03074 PQQ_membr_DH membran 68.6 1E+02 0.0022 32.5 12.9 31 203-240 189-221 (764)
80 KOG2437 Muskelin [Signal trans 66.8 17 0.00037 35.4 6.2 142 123-270 233-395 (723)
81 TIGR03300 assembly_YfgL outer 66.1 1.2E+02 0.0026 28.6 20.5 108 108-238 104-215 (377)
82 COG2706 3-carboxymuconate cycl 66.0 1.1E+02 0.0025 28.4 16.1 107 226-347 168-287 (346)
83 PRK04043 tolB translocation pr 65.7 1.3E+02 0.0029 29.0 13.0 101 226-345 214-318 (419)
84 KOG4547 WD40 repeat-containing 64.1 1.6E+02 0.0034 29.3 13.6 110 226-361 81-195 (541)
85 PRK04792 tolB translocation pr 63.6 1.5E+02 0.0033 28.9 13.8 113 208-344 228-346 (448)
86 TIGR03075 PQQ_enz_alc_DH PQQ-d 61.8 1.7E+02 0.0036 29.4 12.7 31 203-240 64-96 (527)
87 COG3386 Gluconolactonase [Carb 61.5 1.3E+02 0.0029 27.6 12.6 111 209-338 37-155 (307)
88 KOG3545 Olfactomedin and relat 61.4 1.2E+02 0.0026 26.9 10.9 140 185-346 56-212 (249)
89 KOG0647 mRNA export protein (c 61.3 1.1E+02 0.0024 27.9 9.9 72 263-349 42-115 (347)
90 PF02239 Cytochrom_D1: Cytochr 61.2 1.5E+02 0.0033 28.1 13.2 94 226-338 17-112 (369)
91 PRK11028 6-phosphogluconolacto 60.5 1.4E+02 0.003 27.4 15.6 105 226-344 198-314 (330)
92 cd01207 Ena-Vasp Enabled-VASP- 60.4 44 0.00096 25.6 6.4 43 119-165 9-51 (111)
93 TIGR03866 PQQ_ABC_repeats PQQ- 60.3 1.2E+02 0.0026 26.7 21.1 181 117-338 51-241 (300)
94 TIGR03300 assembly_YfgL outer 60.1 1.5E+02 0.0033 27.8 18.7 26 203-235 236-261 (377)
95 PF13570 PQQ_3: PQQ-like domai 60.0 13 0.00029 22.2 3.0 25 203-234 16-40 (40)
96 cd01206 Homer Homer type EVH1 58.6 30 0.00066 26.2 5.1 40 119-165 11-51 (111)
97 COG4257 Vgb Streptogramin lyas 57.1 1.5E+02 0.0033 26.9 16.8 211 108-345 71-314 (353)
98 KOG2321 WD40 repeat protein [G 56.3 1.2E+02 0.0026 30.3 9.9 108 209-338 146-262 (703)
99 PLN02919 haloacid dehalogenase 54.0 3.4E+02 0.0074 30.0 24.3 69 259-338 813-892 (1057)
100 PRK00178 tolB translocation pr 53.8 2.1E+02 0.0046 27.5 20.7 187 118-344 222-414 (430)
101 KOG1274 WD40 repeat protein [G 53.1 3E+02 0.0066 29.1 20.6 68 260-338 149-222 (933)
102 smart00564 PQQ beta-propeller 52.9 33 0.00072 19.1 3.8 24 205-235 3-26 (33)
103 KOG0293 WD40 repeat-containing 52.8 30 0.00065 32.8 5.2 65 260-343 323-391 (519)
104 COG4946 Uncharacterized protei 52.2 2.4E+02 0.0052 27.6 16.2 37 298-346 269-305 (668)
105 KOG0295 WD40 repeat-containing 52.1 69 0.0015 29.9 7.3 65 263-343 306-371 (406)
106 KOG0310 Conserved WD40 repeat- 51.3 2.4E+02 0.0052 27.4 14.4 181 125-345 8-193 (487)
107 PF13360 PQQ_2: PQQ-like domai 50.3 1.6E+02 0.0035 25.2 16.1 134 176-338 4-144 (238)
108 KOG0315 G-protein beta subunit 49.8 1.9E+02 0.0041 25.8 18.9 97 226-338 147-250 (311)
109 PLN00181 protein SPA1-RELATED; 49.7 3.4E+02 0.0074 28.7 23.7 186 111-337 547-741 (793)
110 PRK04792 tolB translocation pr 48.1 2.7E+02 0.0059 27.1 17.7 99 226-343 287-389 (448)
111 PF13859 BNR_3: BNR repeat-lik 47.3 1.8E+02 0.0039 26.9 9.5 84 203-291 125-217 (310)
112 PF13013 F-box-like_2: F-box-l 47.1 4.3 9.4E-05 31.0 -0.9 28 2-29 23-50 (109)
113 KOG2106 Uncharacterized conser 46.9 3E+02 0.0064 27.2 21.3 22 225-246 308-329 (626)
114 KOG2502 Tub family proteins [G 46.0 13 0.00029 34.3 1.8 36 2-37 46-89 (355)
115 COG4946 Uncharacterized protei 46.0 3E+02 0.0065 27.0 15.7 141 175-343 287-438 (668)
116 KOG0649 WD40 repeat protein [G 45.8 2.2E+02 0.0047 25.3 9.5 147 212-375 24-181 (325)
117 KOG0639 Transducin-like enhanc 45.6 82 0.0018 30.8 6.9 77 226-310 488-566 (705)
118 KOG0293 WD40 repeat-containing 45.1 97 0.0021 29.5 7.2 89 259-362 405-494 (519)
119 KOG0645 WD40 repeat protein [G 43.9 2.5E+02 0.0053 25.4 11.3 74 261-347 27-102 (312)
120 KOG1273 WD40 repeat protein [G 43.1 2.7E+02 0.0059 25.7 15.3 127 226-369 176-315 (405)
121 TIGR02276 beta_rpt_yvtn 40-res 42.8 70 0.0015 18.8 4.5 31 306-345 2-32 (42)
122 KOG0289 mRNA splicing factor [ 41.4 3.4E+02 0.0073 26.3 18.3 115 205-344 355-470 (506)
123 PRK04922 tolB translocation pr 40.8 3.4E+02 0.0074 26.2 13.7 114 210-345 217-333 (433)
124 PF14339 DUF4394: Domain of un 39.7 90 0.0019 27.5 5.9 55 108-164 37-93 (236)
125 PF13088 BNR_2: BNR repeat-lik 39.6 2.7E+02 0.0058 24.6 12.8 128 175-312 133-275 (275)
126 KOG1274 WD40 repeat protein [G 39.4 5E+02 0.011 27.6 11.8 71 253-337 191-265 (933)
127 TIGR02800 propeller_TolB tol-p 39.4 3.4E+02 0.0074 25.7 19.9 189 119-344 214-405 (417)
128 TIGR02800 propeller_TolB tol-p 38.7 3.5E+02 0.0075 25.6 20.1 143 175-343 214-361 (417)
129 KOG1310 WD40 repeat protein [G 38.5 4.2E+02 0.0091 26.5 11.5 111 107-234 59-179 (758)
130 KOG4378 Nuclear protein COP1 [ 38.1 4.1E+02 0.0088 26.3 11.5 69 254-338 167-243 (673)
131 KOG0316 Conserved WD40 repeat- 35.4 3.2E+02 0.0069 24.2 16.0 185 109-338 28-217 (307)
132 PRK05137 tolB translocation pr 35.3 4.2E+02 0.0091 25.6 21.2 187 118-343 181-373 (435)
133 KOG2321 WD40 repeat protein [G 35.1 3E+02 0.0066 27.6 9.1 33 102-134 180-212 (703)
134 KOG0646 WD40 repeat protein [G 35.0 4.3E+02 0.0094 25.7 16.5 140 207-365 187-337 (476)
135 KOG2048 WD40 repeat protein [G 34.9 5.1E+02 0.011 26.5 10.9 111 206-343 437-555 (691)
136 PF06433 Me-amine-dh_H: Methyl 34.5 2.7E+02 0.0059 26.1 8.4 107 226-347 18-138 (342)
137 KOG0319 WD40-repeat-containing 34.4 5.5E+02 0.012 26.6 12.9 93 226-338 41-139 (775)
138 PRK04043 tolB translocation pr 33.6 4.5E+02 0.0097 25.4 20.8 189 118-345 212-409 (419)
139 PF14157 YmzC: YmzC-like prote 32.3 66 0.0014 21.7 3.0 16 326-343 41-56 (63)
140 PF14583 Pectate_lyase22: Olig 32.1 4.6E+02 0.0099 25.1 14.9 106 224-343 167-279 (386)
141 PF01011 PQQ: PQQ enzyme repea 32.0 1.1E+02 0.0024 17.9 4.0 16 323-338 7-22 (38)
142 KOG4152 Host cell transcriptio 31.3 39 0.00085 33.0 2.6 93 186-287 18-123 (830)
143 PF00930 DPPIV_N: Dipeptidyl p 30.6 4.5E+02 0.0097 24.5 11.9 110 225-343 158-275 (353)
144 PLN02919 haloacid dehalogenase 30.0 7.9E+02 0.017 27.2 24.8 117 208-343 694-840 (1057)
145 PF07250 Glyoxal_oxid_N: Glyox 29.8 4E+02 0.0087 23.6 8.7 136 119-270 46-190 (243)
146 PRK04922 tolB translocation pr 29.1 5.3E+02 0.011 24.8 20.9 191 118-345 227-420 (433)
147 PF07569 Hira: TUP1-like enhan 29.1 2.7E+02 0.0059 24.1 7.4 80 101-191 14-103 (219)
148 COG2706 3-carboxymuconate cycl 29.1 4.8E+02 0.011 24.4 20.9 155 175-344 167-331 (346)
149 KOG0289 mRNA splicing factor [ 27.7 5.7E+02 0.012 24.8 10.2 100 175-291 369-473 (506)
150 PRK00178 tolB translocation pr 27.7 5.5E+02 0.012 24.6 20.9 143 175-343 223-370 (430)
151 KOG0283 WD40 repeat-containing 27.3 1.4E+02 0.0031 30.7 5.8 49 274-338 433-485 (712)
152 COG0823 TolB Periplasmic compo 27.1 3.5E+02 0.0077 26.2 8.4 102 226-347 219-325 (425)
153 PTZ00334 trans-sialidase; Prov 27.0 4.1E+02 0.0089 28.1 9.1 84 203-291 264-354 (780)
154 PRK02889 tolB translocation pr 27.0 5.8E+02 0.012 24.6 12.6 113 208-343 207-323 (427)
155 KOG0647 mRNA export protein (c 26.9 5E+02 0.011 23.9 11.8 92 226-338 95-188 (347)
156 PF13854 Kelch_5: Kelch motif 26.2 1.3E+02 0.0028 18.1 3.5 32 203-234 9-41 (42)
157 KOG0318 WD40 repeat stress pro 26.0 4.9E+02 0.011 25.9 8.8 36 297-343 489-524 (603)
158 KOG2106 Uncharacterized conser 24.9 6.9E+02 0.015 24.8 11.5 79 274-364 223-303 (626)
159 KOG2048 WD40 repeat protein [G 24.8 7.7E+02 0.017 25.3 16.7 65 260-335 343-414 (691)
160 KOG3881 Uncharacterized conser 24.7 6.1E+02 0.013 24.1 15.7 55 175-234 173-235 (412)
161 PRK03629 tolB translocation pr 24.6 6.4E+02 0.014 24.3 20.5 143 175-344 223-371 (429)
162 KOG3926 F-box proteins [Amino 23.2 32 0.0007 30.7 0.4 36 2-37 203-239 (332)
163 KOG2096 WD40 repeat protein [G 23.1 6.2E+02 0.013 23.6 11.1 33 301-344 193-225 (420)
164 PF12458 DUF3686: ATPase invol 22.9 7E+02 0.015 24.2 11.3 56 109-164 238-302 (448)
165 KOG2714 SETA binding protein S 22.7 7.1E+02 0.015 24.2 11.2 71 119-191 245-318 (465)
166 PF11012 DUF2850: Protein of u 22.4 2.7E+02 0.0059 19.9 4.9 32 185-217 4-38 (79)
167 PF07861 WND: WisP family N-Te 21.8 1.2E+02 0.0027 25.4 3.5 32 101-132 32-63 (263)
168 PF00568 WH1: WH1 domain; Int 21.7 3.5E+02 0.0076 20.4 5.9 39 119-165 16-55 (111)
169 KOG2055 WD40 repeat protein [G 21.5 7.7E+02 0.017 24.1 15.1 152 104-281 264-417 (514)
170 PF08268 FBA_3: F-box associat 21.5 3.9E+02 0.0083 20.6 9.8 91 175-266 20-118 (129)
171 KOG0299 U3 snoRNP-associated p 20.9 7.8E+02 0.017 24.0 18.5 102 204-313 332-443 (479)
172 PF13497 DUF4121: Domain of un 20.4 1.2E+02 0.0026 26.7 3.3 38 203-240 128-165 (262)
173 PF00930 DPPIV_N: Dipeptidyl p 20.2 7.1E+02 0.015 23.2 12.8 180 120-313 159-345 (353)
174 TIGR03075 PQQ_enz_alc_DH PQQ-d 20.1 8.9E+02 0.019 24.3 20.7 123 109-243 69-201 (527)
No 1
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=100.00 E-value=1.3e-32 Score=243.58 Aligned_cols=220 Identities=26% Similarity=0.434 Sum_probs=161.9
Q ss_pred EcccCcEEEEeeCCCcEEEEccCCcceeeCCCCCCCCCC-ceEEEEEeEECCCCCEEEEEEEEEeecCccceEEEEEEcC
Q 016891 105 IDSCNGLIAFKNDENGIALWNPSTEEHLILPKFWGDLKD-FMVVDGFGYDAVNDDYKVVRLVQLVIGNVGYTEIAVYSLR 183 (381)
Q Consensus 105 ~~s~~GLl~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~-~~~~~~~~~d~~~~~ykVv~~~~~~~~~~~~~~~~vyss~ 183 (381)
++|||||||+... ..++||||+||+++.||+++..... ....++||||+.+++||||++.... .+.....++||+++
T Consensus 1 ~~sCnGLlc~~~~-~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~G~d~~~~~YKVv~~~~~~-~~~~~~~~~Vys~~ 78 (230)
T TIGR01640 1 VVPCDGLICFSYG-KRLVVWNPSTGQSRWLPTPKSRRSNKESDTYFLGYDPIEKQYKVLCFSDRS-GNRNQSEHQVYTLG 78 (230)
T ss_pred CcccceEEEEecC-CcEEEECCCCCCEEecCCCCCcccccccceEEEeecccCCcEEEEEEEeec-CCCCCccEEEEEeC
Confidence 4799999998865 7899999999999999976542111 1125789999999999999997632 11123789999999
Q ss_pred CCcEEEcccCCCcceecCCCcEEECCeeEEEEeeCCCCCCcCEEEEEECCCCeee-eecCCCCCCCCCceeEEEEEECCe
Q 016891 184 TNSWRRIRVDFPYYILHGWDGTFADGHVHWLVTNNPEDYIENLIIAFNLKSEEFH-EVPLPHLENRNDVLVMFVGNFSGC 262 (381)
Q Consensus 184 t~~W~~~~~~~p~~~~~~~~~v~~nG~lYwl~~~~~~~~~~~~i~~fD~~~e~~~-~i~~P~~~~~~~~~~~~L~~~~G~ 262 (381)
+++||.+. ..+........+|++||.+||+.....+. ....|++||+.+|+|+ .+++|...... .....|++++|+
T Consensus 79 ~~~Wr~~~-~~~~~~~~~~~~v~~~G~lyw~~~~~~~~-~~~~IvsFDl~~E~f~~~i~~P~~~~~~-~~~~~L~~~~G~ 155 (230)
T TIGR01640 79 SNSWRTIE-CSPPHHPLKSRGVCINGVLYYLAYTLKTN-PDYFIVSFDVSSERFKEFIPLPCGNSDS-VDYLSLINYKGK 155 (230)
T ss_pred CCCccccc-cCCCCccccCCeEEECCEEEEEEEECCCC-CcEEEEEEEcccceEeeeeecCcccccc-ccceEEEEECCE
Confidence 99999988 33322222225999999999999754321 1127999999999999 58888754321 124689999999
Q ss_pred EEEEEecCCCceEEEEEEC----CceeEEEEec-C-CCC--CeeEEEEEEeCCCEEEEEecccCCccccCCcEEEEEeCC
Q 016891 263 LYFSCLCNYPQPVDIWVLM----GCWTKTFSFP-R-SVG--DYVKALAYSKSGGKVLVDKFEYGEDEDINRWELFWYDLQ 334 (381)
Q Consensus 263 L~~~~~~~~~~~~~iW~l~----~~W~~~~~i~-~-~~~--~~~~~~~~~~~g~~i~l~~~~~~~~~~~~~~~l~~yd~~ 334 (381)
|+++........++||+|+ .+|+|+++|+ + ..+ ....++++..+|+ |++... + .....+++||++
T Consensus 156 L~~v~~~~~~~~~~IWvl~d~~~~~W~k~~~i~~~~~~~~~~~~~~~~~~~~g~-I~~~~~-----~-~~~~~~~~y~~~ 228 (230)
T TIGR01640 156 LAVLKQKKDTNNFDLWVLNDAGKQEWSKLFTVPIPPLPDLVDDNFLSGFTDKGE-IVLCCE-----D-ENPFYIFYYNVG 228 (230)
T ss_pred EEEEEecCCCCcEEEEEECCCCCCceeEEEEEcCcchhhhhhheeEeEEeeCCE-EEEEeC-----C-CCceEEEEEecc
Confidence 9999987643379999999 5799999998 2 222 1245889988888 777730 0 113349999999
Q ss_pred CC
Q 016891 335 NQ 336 (381)
Q Consensus 335 t~ 336 (381)
+|
T Consensus 229 ~~ 230 (230)
T TIGR01640 229 EN 230 (230)
T ss_pred CC
Confidence 86
No 2
>PF07734 FBA_1: F-box associated; InterPro: IPR006527 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=99.67 E-value=9.3e-15 Score=122.05 Aligned_cols=148 Identities=24% Similarity=0.469 Sum_probs=101.0
Q ss_pred cEEECCeeEEEEeeCCCCCCcCEEEEEECCCCee-eeecCCCCCCCCCceeEEEEEE-CCeEEEEEecCCCceEEEEEEC
Q 016891 204 GTFADGHVHWLVTNNPEDYIENLIIAFNLKSEEF-HEVPLPHLENRNDVLVMFVGNF-SGCLYFSCLCNYPQPVDIWVLM 281 (381)
Q Consensus 204 ~v~~nG~lYwl~~~~~~~~~~~~i~~fD~~~e~~-~~i~~P~~~~~~~~~~~~L~~~-~G~L~~~~~~~~~~~~~iW~l~ 281 (381)
||++||++||++........ ..|++||+.+|+| +.+++|.... .......|++. +|+||++.....+..++||+|+
T Consensus 1 gV~vnG~~hW~~~~~~~~~~-~~IlsFDl~~E~F~~~~~lP~~~~-~~~~~~~L~~v~~~~L~~~~~~~~~~~~~IWvm~ 78 (164)
T PF07734_consen 1 GVFVNGALHWLAYDENNDEK-DFILSFDLSTEKFGRSLPLPFCND-DDDDSVSLSVVRGDCLCVLYQCDETSKIEIWVMK 78 (164)
T ss_pred CEEECCEEEeeEEecCCCCc-eEEEEEeccccccCCEECCCCccC-ccCCEEEEEEecCCEEEEEEeccCCccEEEEEEe
Confidence 68999999999987643211 1799999999999 8889998765 22346677655 6799999876655479999998
Q ss_pred ------CceeEEEEec-CC-CCCe---eEEEEEEeCCCEEEEEecccCCccccCC---cEEEEEeCCCCceeeeeEEEec
Q 016891 282 ------GCWTKTFSFP-RS-VGDY---VKALAYSKSGGKVLVDKFEYGEDEDINR---WELFWYDLQNQGAAADQVTIHG 347 (381)
Q Consensus 282 ------~~W~~~~~i~-~~-~~~~---~~~~~~~~~g~~i~l~~~~~~~~~~~~~---~~l~~yd~~t~~~~~~~v~~~~ 347 (381)
.+|+|.++|+ .. .... ..+..+..+++.+++.. +..... ..+++|+ +.+.. +++.+..
T Consensus 79 ~~~~~~~SWtK~~~i~~~~~~~~~~~~~~~~~~i~~~~~vlv~~-----~~~~~~~~~~~i~i~g-~~~~~--~~~~~~~ 150 (164)
T PF07734_consen 79 KYGYGKESWTKLFTIDLPPLPSLFFHFRNPSFFIDEEKKVLVCC-----DKETQREEKNKIYIVG-EDGKF--IEVDIED 150 (164)
T ss_pred eeccCcceEEEEEEEecCCCCCcccccccceEEEeCCCeEEEEE-----cCCCCccceeEEEEEc-CCCEE--EEccccc
Confidence 4899999998 22 2111 12222233333366662 221222 5688998 88888 8998744
Q ss_pred CCCCceeEEEEeec
Q 016891 348 VPQGCRDTIVCVDS 361 (381)
Q Consensus 348 ~~~~~~~~~~y~~s 361 (381)
....+..+..|+||
T Consensus 151 ~~~~~~~~~~YvpS 164 (164)
T PF07734_consen 151 KSSCWPSICNYVPS 164 (164)
T ss_pred CCCCCCCEEEECCC
Confidence 33223668899987
No 3
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=99.58 E-value=1.9e-12 Score=119.16 Aligned_cols=316 Identities=15% Similarity=0.118 Sum_probs=160.0
Q ss_pred CCCcHHHHHHHHccCC-ccceeEEEeehhhhhhhccChhHHHHHHhcccccCCCeeEEecCC--CCCcCCCCCcccceEE
Q 016891 2 AGLPTDINIDILSRLS-VKCLLRFKCVSKSFCSLIDSQEFIKIHLKRSIETNSNLSLILSGT--PAPILDSSRYWGGKIF 78 (381)
Q Consensus 2 ~~LPdDll~eIL~rLP-~~~l~r~r~VcK~W~~li~~p~F~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~ 78 (381)
++||+|||..|..||| .-++.|+|+|||+||+.+.... +.++.+..|.+++... ..|+...+. +
T Consensus 5 s~Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~------~ 71 (373)
T PLN03215 5 STLPEELLHMIAGRLFSNVELKRFRSICRSWRSSVSGVG-------KKNPFRTRPLILFNPINPSETLTDDRS------Y 71 (373)
T ss_pred hhCCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhccccc-------ccCCcccccccccCcccCCCCcccccc------c
Confidence 5799999999999998 5589999999999999876321 0000101122332220 111000000 0
Q ss_pred eecCCCCCCcccccCCCCCCCCCeeE-EcccCcEEEEee---CCCcEEEEccCCcceeeCCCCCCCCCCce-----EEEE
Q 016891 79 SAGLDSLNLGVELDHPFKNCKGRTPI-IDSCNGLIAFKN---DENGIALWNPSTEEHLILPKFWGDLKDFM-----VVDG 149 (381)
Q Consensus 79 ~~~~~~~~~~~~~~~p~~~~~~~~~~-~~s~~GLl~~~~---~~~~~~V~NP~T~~~~~LP~~~~~~~~~~-----~~~~ 149 (381)
..... ..+. +. ...+... .++..|+|.-.+ ...++.+.||+++.-..+|+...+..... ..+.
T Consensus 72 ---~~~~~--~~ls-~~--~~~r~~~~~~~~~~WLik~~~~~~~~~~~Ll~PLsr~~~~~~~~~lnll~f~v~ei~~~y~ 143 (373)
T PLN03215 72 ---ISRPG--AFLS-RA--AFFRVTLSSSPSKGWLIKSDMDVNSGRFHLLNPLSRLPLRHSSESVDLLEFTVSEIREAYQ 143 (373)
T ss_pred ---ccccc--ceee-ee--EEEEeecCCCCCCCcEEEEeccccCCccEecCccccCccCCCCccceeeeeEEEEccceEE
Confidence 00000 0000 00 0000100 134678887654 34789999999999877774332221100 1111
Q ss_pred E-eEEC---CCCCEEEEEEEEEeecCc-cceEEEEEEc------CCCcEEEcccCCCcceecCCCcEEECCeeEEEEeeC
Q 016891 150 F-GYDA---VNDDYKVVRLVQLVIGNV-GYTEIAVYSL------RTNSWRRIRVDFPYYILHGWDGTFADGHVHWLVTNN 218 (381)
Q Consensus 150 ~-~~d~---~~~~ykVv~~~~~~~~~~-~~~~~~vyss------~t~~W~~~~~~~p~~~~~~~~~v~~nG~lYwl~~~~ 218 (381)
+ +.+. ....|+-+++......+. +...+-|+.. ..++|+.++ .... .....|+++|.+|.+...+
T Consensus 144 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~i~~~g~l~~w~~~~Wt~l~-~~~~---~~~DIi~~kGkfYAvD~~G 219 (373)
T PLN03215 144 VLDWAKRRETRPGYQRSALVKVKEGDNHRDGVLGIGRDGKINYWDGNVLKALK-QMGY---HFSDIIVHKGQTYALDSIG 219 (373)
T ss_pred EEecccccccccceeEEEEEEeecCCCcceEEEEEeecCcEeeecCCeeeEcc-CCCc---eeeEEEEECCEEEEEcCCC
Confidence 1 1111 011232122211111111 1122222221 147888887 4222 2227899999999996544
Q ss_pred CCCCCcCEEEEEECCCCeeeeecCCCC--CC-CCCceeEEEEEECCeEEEEEecC---------------CCceEEEEEE
Q 016891 219 PEDYIENLIIAFNLKSEEFHEVPLPHL--EN-RNDVLVMFVGNFSGCLYFSCLCN---------------YPQPVDIWVL 280 (381)
Q Consensus 219 ~~~~~~~~i~~fD~~~e~~~~i~~P~~--~~-~~~~~~~~L~~~~G~L~~~~~~~---------------~~~~~~iW~l 280 (381)
.+.++|..-+ .+.+..+.. .. .......+|+++.|.|+++.... .+..++|+.+
T Consensus 220 -------~l~~i~~~l~-i~~v~~~i~~~~~~g~~~~~~yLVEs~GdLLmV~R~~~~~~~~~~~~~~~~~~t~~f~Vfkl 291 (373)
T PLN03215 220 -------IVYWINSDLE-FSRFGTSLDENITDGCWTGDRRFVECCGELYIVERLPKESTWKRKADGFEYSRTVGFKVYKF 291 (373)
T ss_pred -------eEEEEecCCc-eeeecceecccccCCcccCceeEEEECCEEEEEEEEccCcccccccccccccceeEEEEEEE
Confidence 4666664321 122211111 00 00013468999999999998742 1236889998
Q ss_pred C---CceeEEEEecC--C-CC--CeeEEEEE---EeCCCEEEEEecccCCccccCCcEEEEEeCCCCceeeeeEEEecCC
Q 016891 281 M---GCWTKTFSFPR--S-VG--DYVKALAY---SKSGGKVLVDKFEYGEDEDINRWELFWYDLQNQGAAADQVTIHGVP 349 (381)
Q Consensus 281 ~---~~W~~~~~i~~--~-~~--~~~~~~~~---~~~g~~i~l~~~~~~~~~~~~~~~l~~yd~~t~~~~~~~v~~~~~~ 349 (381)
+ .+|.++.+++. . .+ ......+- .-.++.|++. +.....+||++.++.+.-.+.+.+..
T Consensus 292 D~~~~~WveV~sLgd~aLFlG~~~s~sv~a~e~pG~k~NcIYFt----------dd~~~~v~~~~dg~~~~~~~~~~~~~ 361 (373)
T PLN03215 292 DDELAKWMEVKTLGDNAFVMATDTCFSVLAHEFYGCLPNSIYFT----------EDTMPKVFKLDNGNGSSIETTISESS 361 (373)
T ss_pred cCCCCcEEEecccCCeEEEEECCccEEEecCCCCCccCCEEEEE----------CCCcceEEECCCCCccceEeecCccc
Confidence 8 89999999872 1 12 11111110 1135668888 34457899999999722233444444
Q ss_pred CCceeEEEEeece
Q 016891 350 QGCRDTIVCVDSL 362 (381)
Q Consensus 350 ~~~~~~~~y~~sl 362 (381)
.+|| ..|++|+
T Consensus 362 ~~~~--~~~~~~~ 372 (373)
T PLN03215 362 QSSF--EMFVPSF 372 (373)
T ss_pred cchh--eeecccc
Confidence 4434 5556654
No 4
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=99.51 E-value=6.1e-13 Score=106.45 Aligned_cols=106 Identities=24% Similarity=0.427 Sum_probs=81.0
Q ss_pred cEEECCeeEEEEeeCCCCCCcCEEEEEECCCCeeeeecCCCCCCCCCceeEEEEEECCeEEEEEecCCC--ceEEEEEEC
Q 016891 204 GTFADGHVHWLVTNNPEDYIENLIIAFNLKSEEFHEVPLPHLENRNDVLVMFVGNFSGCLYFSCLCNYP--QPVDIWVLM 281 (381)
Q Consensus 204 ~v~~nG~lYwl~~~~~~~~~~~~i~~fD~~~e~~~~i~~P~~~~~~~~~~~~L~~~~G~L~~~~~~~~~--~~~~iW~l~ 281 (381)
|+++||.+||++... ......|++||+.+|+|+.+++|... ........|.+++|+|+++...... ..++||+|+
T Consensus 1 gicinGvly~~a~~~--~~~~~~IvsFDv~~E~f~~i~~P~~~-~~~~~~~~L~~~~G~L~~v~~~~~~~~~~~~iWvLe 77 (129)
T PF08268_consen 1 GICINGVLYWLAWSE--DSDNNVIVSFDVRSEKFRFIKLPEDP-YSSDCSSTLIEYKGKLALVSYNDQGEPDSIDIWVLE 77 (129)
T ss_pred CEEECcEEEeEEEEC--CCCCcEEEEEEcCCceEEEEEeeeee-ccccCccEEEEeCCeEEEEEecCCCCcceEEEEEee
Confidence 689999999999872 12345899999999999999998211 1123567999999999999987743 369999999
Q ss_pred ----CceeEEEEe-cCC---C--CCeeEEEEEEeCCCEEEEE
Q 016891 282 ----GCWTKTFSF-PRS---V--GDYVKALAYSKSGGKVLVD 313 (381)
Q Consensus 282 ----~~W~~~~~i-~~~---~--~~~~~~~~~~~~g~~i~l~ 313 (381)
.+|++.+.+ +.. . +....+.++.++|+ |++.
T Consensus 78 D~~k~~Wsk~~~~lp~~~~~~~~~~~~~~~g~~~~Ge-iv~~ 118 (129)
T PF08268_consen 78 DYEKQEWSKKHIVLPPSWQHFVHDCDFSFVGVTDTGE-IVFA 118 (129)
T ss_pred ccccceEEEEEEECChHHhcccCCcEEEEEEEcCCCE-EEEE
Confidence 789998664 321 1 15678899999999 5555
No 5
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=99.37 E-value=3.3e-11 Score=119.40 Aligned_cols=199 Identities=16% Similarity=0.180 Sum_probs=134.3
Q ss_pred CcEEEEccCCcceeeCCCCCCCCCCceEEEEEeEECCCCCEEEEEEEEEeecCccceEEEEEEcCCCcEEEcccCCCcce
Q 016891 119 NGIALWNPSTEEHLILPKFWGDLKDFMVVDGFGYDAVNDDYKVVRLVQLVIGNVGYTEIAVYSLRTNSWRRIRVDFPYYI 198 (381)
Q Consensus 119 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~d~~~~~ykVv~~~~~~~~~~~~~~~~vyss~t~~W~~~~~~~p~~~ 198 (381)
+....+||.+.+|..+|++........ .+.+ +.++.++..+. .......+|.|+++++.|..++ .++.
T Consensus 349 ~~ve~YD~~~~~W~~~a~M~~~R~~~~-v~~l-------~g~iYavGG~d-g~~~l~svE~YDp~~~~W~~va-~m~~-- 416 (571)
T KOG4441|consen 349 SSVERYDPRTNQWTPVAPMNTKRSDFG-VAVL-------DGKLYAVGGFD-GEKSLNSVECYDPVTNKWTPVA-PMLT-- 416 (571)
T ss_pred ceEEEecCCCCceeccCCccCccccce-eEEE-------CCEEEEEeccc-cccccccEEEecCCCCcccccC-CCCc--
Confidence 568999999999999999876543222 1112 23555554421 1112278999999999999999 5554
Q ss_pred ecCC-CcEEECCeeEEEEeeCCCCCCcCEEEEEECCCCeeeee-cCCCCCCCCCceeEEEEEECCeEEEEEecCCC---c
Q 016891 199 LHGW-DGTFADGHVHWLVTNNPEDYIENLIIAFNLKSEEFHEV-PLPHLENRNDVLVMFVGNFSGCLYFSCLCNYP---Q 273 (381)
Q Consensus 199 ~~~~-~~v~~nG~lYwl~~~~~~~~~~~~i~~fD~~~e~~~~i-~~P~~~~~~~~~~~~L~~~~G~L~~~~~~~~~---~ 273 (381)
.... .++.++|.||.+++.+........+.+||+.+++|+.+ +++... ....++.++|.||++++.++. .
T Consensus 417 ~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R-----~~~g~a~~~~~iYvvGG~~~~~~~~ 491 (571)
T KOG4441|consen 417 RRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRR-----SGFGVAVLNGKIYVVGGFDGTSALS 491 (571)
T ss_pred ceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCccccc-----ccceEEEECCEEEEECCccCCCccc
Confidence 3333 77889999999998665433456899999999999987 555443 344689999999999998752 1
Q ss_pred eEEEEEEC-CceeEEEEecCCCCCeeEEEEEEeCCCEEEEEecccCCccccCCcEEEEEeCCCCceeeeeE
Q 016891 274 PVDIWVLM-GCWTKTFSFPRSVGDYVKALAYSKSGGKVLVDKFEYGEDEDINRWELFWYDLQNQGAAADQV 343 (381)
Q Consensus 274 ~~~iW~l~-~~W~~~~~i~~~~~~~~~~~~~~~~g~~i~l~~~~~~~~~~~~~~~l~~yd~~t~~~~~~~v 343 (381)
.++.+..+ ++|..+..+.. .....++..-+++|++.+ |.+-...-..+..||+++++| +.+
T Consensus 492 ~VE~ydp~~~~W~~v~~m~~----~rs~~g~~~~~~~ly~vG---G~~~~~~l~~ve~ydp~~d~W--~~~ 553 (571)
T KOG4441|consen 492 SVERYDPETNQWTMVAPMTS----PRSAVGVVVLGGKLYAVG---GFDGNNNLNTVECYDPETDTW--TEV 553 (571)
T ss_pred eEEEEcCCCCceeEcccCcc----ccccccEEEECCEEEEEe---cccCccccceeEEcCCCCCce--eeC
Confidence 33444444 99999866652 112223333344488874 112112335699999999999 777
No 6
>PHA02713 hypothetical protein; Provisional
Probab=99.35 E-value=1e-10 Score=116.18 Aligned_cols=224 Identities=11% Similarity=0.105 Sum_probs=137.8
Q ss_pred cEEEEccCCcceeeCCCCCCCCCCceEEEEEeEECCCCCEEEEEEEEEeecCccceEEEEEEcCCCcEEEcccCCCccee
Q 016891 120 GIALWNPSTEEHLILPKFWGDLKDFMVVDGFGYDAVNDDYKVVRLVQLVIGNVGYTEIAVYSLRTNSWRRIRVDFPYYIL 199 (381)
Q Consensus 120 ~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~d~~~~~ykVv~~~~~~~~~~~~~~~~vyss~t~~W~~~~~~~p~~~~ 199 (381)
.+..+||.+++|..+++.+..... ...+.+ ++ +|+.++...........++.|++.++.|..++ .+|..
T Consensus 273 ~v~~yd~~~~~W~~l~~mp~~r~~-~~~a~l------~~-~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~-~m~~~-- 341 (557)
T PHA02713 273 CILVYNINTMEYSVISTIPNHIIN-YASAIV------DN-EIIIAGGYNFNNPSLNKVYKINIENKIHVELP-PMIKN-- 341 (557)
T ss_pred CEEEEeCCCCeEEECCCCCccccc-eEEEEE------CC-EEEEEcCCCCCCCccceEEEEECCCCeEeeCC-CCcch--
Confidence 567899999999999988754321 112222 12 45555431101111267999999999999988 66543
Q ss_pred cCC-CcEEECCeeEEEEeeCCCCCCcCEEEEEECCCCeeeee-cCCCCCCCCCceeEEEEEECCeEEEEEecCCC-----
Q 016891 200 HGW-DGTFADGHVHWLVTNNPEDYIENLIIAFNLKSEEFHEV-PLPHLENRNDVLVMFVGNFSGCLYFSCLCNYP----- 272 (381)
Q Consensus 200 ~~~-~~v~~nG~lYwl~~~~~~~~~~~~i~~fD~~~e~~~~i-~~P~~~~~~~~~~~~L~~~~G~L~~~~~~~~~----- 272 (381)
+.. ..+.++|+||.+++.... .....+.+||+.+++|+.+ ++|... .....+.++|+||++++....
T Consensus 342 R~~~~~~~~~g~IYviGG~~~~-~~~~sve~Ydp~~~~W~~~~~mp~~r-----~~~~~~~~~g~IYviGG~~~~~~~~~ 415 (557)
T PHA02713 342 RCRFSLAVIDDTIYAIGGQNGT-NVERTIECYTMGDDKWKMLPDMPIAL-----SSYGMCVLDQYIYIIGGRTEHIDYTS 415 (557)
T ss_pred hhceeEEEECCEEEEECCcCCC-CCCceEEEEECCCCeEEECCCCCccc-----ccccEEEECCEEEEEeCCCccccccc
Confidence 333 678899999999986432 1233699999999999988 555433 234567889999999876421
Q ss_pred ----------------ceEEEEEEC-CceeEEEEecCCCCCeeEEEEEEeCCCEEEEEecccCCccc-cCCcEEEEEeCC
Q 016891 273 ----------------QPVDIWVLM-GCWTKTFSFPRSVGDYVKALAYSKSGGKVLVDKFEYGEDED-INRWELFWYDLQ 334 (381)
Q Consensus 273 ----------------~~~~iW~l~-~~W~~~~~i~~~~~~~~~~~~~~~~g~~i~l~~~~~~~~~~-~~~~~l~~yd~~ 334 (381)
..+..+..+ ++|..+..++. ......+++. +|. |++.+ |.+.. .....+..||++
T Consensus 416 ~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~--~r~~~~~~~~-~~~-IYv~G---G~~~~~~~~~~ve~Ydp~ 488 (557)
T PHA02713 416 VHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWT--GTIRPGVVSH-KDD-IYVVC---DIKDEKNVKTCIFRYNTN 488 (557)
T ss_pred ccccccccccccccccceEEEECCCCCeEeecCCCCc--ccccCcEEEE-CCE-EEEEe---CCCCCCccceeEEEecCC
Confidence 123333333 89997766652 1112223333 455 88884 11100 011347899999
Q ss_pred C-CceeeeeEEEec-CCCCceeEEEEeeceecCcCCCC
Q 016891 335 N-QGAAADQVTIHG-VPQGCRDTIVCVDSLVSLAACAG 370 (381)
Q Consensus 335 t-~~~~~~~v~~~~-~~~~~~~~~~y~~sl~~~~~~~~ 370 (381)
+ ++| +.+.-.. .... ..+..+.+.|.-+.+..+
T Consensus 489 ~~~~W--~~~~~m~~~r~~-~~~~~~~~~iyv~Gg~~~ 523 (557)
T PHA02713 489 TYNGW--ELITTTESRLSA-LHTILHDNTIMMLHCYES 523 (557)
T ss_pred CCCCe--eEccccCccccc-ceeEEECCEEEEEeeecc
Confidence 9 899 8873222 2222 556777777776666544
No 7
>PHA02713 hypothetical protein; Provisional
Probab=99.33 E-value=2.1e-10 Score=113.96 Aligned_cols=197 Identities=11% Similarity=0.076 Sum_probs=125.5
Q ss_pred CcEEEEccCCcceeeCCCCCCCCCCceEEEEEeEECCCCCEEEEEEEEEeecCccceEEEEEEcCCCcEEEcccCCCcce
Q 016891 119 NGIALWNPSTEEHLILPKFWGDLKDFMVVDGFGYDAVNDDYKVVRLVQLVIGNVGYTEIAVYSLRTNSWRRIRVDFPYYI 198 (381)
Q Consensus 119 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~d~~~~~ykVv~~~~~~~~~~~~~~~~vyss~t~~W~~~~~~~p~~~ 198 (381)
+.+..+||.+++|..+|+.+..... ...+.++ + ++.+++... .......+++|++.+++|+.++ .+|...
T Consensus 320 ~~v~~Yd~~~n~W~~~~~m~~~R~~-~~~~~~~-----g--~IYviGG~~-~~~~~~sve~Ydp~~~~W~~~~-~mp~~r 389 (557)
T PHA02713 320 NKVYKINIENKIHVELPPMIKNRCR-FSLAVID-----D--TIYAIGGQN-GTNVERTIECYTMGDDKWKMLP-DMPIAL 389 (557)
T ss_pred ceEEEEECCCCeEeeCCCCcchhhc-eeEEEEC-----C--EEEEECCcC-CCCCCceEEEEECCCCeEEECC-CCCccc
Confidence 4578999999999999988754322 1222221 1 565554321 1111267999999999999998 666443
Q ss_pred ecCCCcEEECCeeEEEEeeCCCC-----------------CCcCEEEEEECCCCeeeee-cCCCCCCCCCceeEEEEEEC
Q 016891 199 LHGWDGTFADGHVHWLVTNNPED-----------------YIENLIIAFNLKSEEFHEV-PLPHLENRNDVLVMFVGNFS 260 (381)
Q Consensus 199 ~~~~~~v~~nG~lYwl~~~~~~~-----------------~~~~~i~~fD~~~e~~~~i-~~P~~~~~~~~~~~~L~~~~ 260 (381)
... ..+.++|.||.+++..... .....+.+||+.+++|+.+ ++|... ....+++++
T Consensus 390 ~~~-~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r-----~~~~~~~~~ 463 (557)
T PHA02713 390 SSY-GMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGT-----IRPGVVSHK 463 (557)
T ss_pred ccc-cEEEECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCCccc-----ccCcEEEEC
Confidence 222 6678999999998754210 0124699999999999987 444432 234678899
Q ss_pred CeEEEEEecCCCce-E-EEEEEC----CceeEEEEecCCCCCeeEEEEEEeCCCEEEEEecccCCccccCCcEEEEEeCC
Q 016891 261 GCLYFSCLCNYPQP-V-DIWVLM----GCWTKTFSFPRSVGDYVKALAYSKSGGKVLVDKFEYGEDEDINRWELFWYDLQ 334 (381)
Q Consensus 261 G~L~~~~~~~~~~~-~-~iW~l~----~~W~~~~~i~~~~~~~~~~~~~~~~g~~i~l~~~~~~~~~~~~~~~l~~yd~~ 334 (381)
|+||++++..+... . .+...+ ++|..+..++.. .....+++. +|. |++.+ +.+ ....+.+||++
T Consensus 464 ~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~--r~~~~~~~~-~~~-iyv~G----g~~--~~~~~e~yd~~ 533 (557)
T PHA02713 464 DDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESR--LSALHTILH-DNT-IMMLH----CYE--SYMLQDTFNVY 533 (557)
T ss_pred CEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcc--cccceeEEE-CCE-EEEEe----eec--ceeehhhcCcc
Confidence 99999987643111 1 233444 379988877621 112222222 454 88883 211 11258999999
Q ss_pred CCceeeeeE
Q 016891 335 NQGAAADQV 343 (381)
Q Consensus 335 t~~~~~~~v 343 (381)
|++| ..+
T Consensus 534 ~~~W--~~~ 540 (557)
T PHA02713 534 TYEW--NHI 540 (557)
T ss_pred cccc--cch
Confidence 9999 877
No 8
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=99.29 E-value=3.2e-10 Score=112.51 Aligned_cols=224 Identities=16% Similarity=0.126 Sum_probs=144.0
Q ss_pred CcEEEEccCCcceeeCCCCCCCCCCceEEEEEeEECCCCCEEEEEEEEEeecCccc-eEEEEEEcCCCcEEEcccCCCcc
Q 016891 119 NGIALWNPSTEEHLILPKFWGDLKDFMVVDGFGYDAVNDDYKVVRLVQLVIGNVGY-TEIAVYSLRTNSWRRIRVDFPYY 197 (381)
Q Consensus 119 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~d~~~~~ykVv~~~~~~~~~~~~-~~~~vyss~t~~W~~~~~~~p~~ 197 (381)
+.+..+||.+++|..+.+++...... ..+.++ + +|..++.... +... ..++.|++.+++|..++ .+.
T Consensus 301 ~~ve~yd~~~~~w~~~a~m~~~r~~~-~~~~~~------~-~lYv~GG~~~-~~~~l~~ve~YD~~~~~W~~~a-~M~-- 368 (571)
T KOG4441|consen 301 RSVECYDPKTNEWSSLAPMPSPRCRV-GVAVLN------G-KLYVVGGYDS-GSDRLSSVERYDPRTNQWTPVA-PMN-- 368 (571)
T ss_pred ceeEEecCCcCcEeecCCCCcccccc-cEEEEC------C-EEEEEccccC-CCcccceEEEecCCCCceeccC-Ccc--
Confidence 45778899999999999887554321 222221 1 5555543211 1122 78999999999999988 443
Q ss_pred eecCC-CcEEECCeeEEEEeeCCCCCCcCEEEEEECCCCeeeee-cCCCCCCCCCceeEEEEEECCeEEEEEecCCCc--
Q 016891 198 ILHGW-DGTFADGHVHWLVTNNPEDYIENLIIAFNLKSEEFHEV-PLPHLENRNDVLVMFVGNFSGCLYFSCLCNYPQ-- 273 (381)
Q Consensus 198 ~~~~~-~~v~~nG~lYwl~~~~~~~~~~~~i~~fD~~~e~~~~i-~~P~~~~~~~~~~~~L~~~~G~L~~~~~~~~~~-- 273 (381)
..+.. ..+.++|.||.+++.+. ......+..||+.+++|..+ +++.. ......++.+|+||++++.....
T Consensus 369 ~~R~~~~v~~l~g~iYavGG~dg-~~~l~svE~YDp~~~~W~~va~m~~~-----r~~~gv~~~~g~iYi~GG~~~~~~~ 442 (571)
T KOG4441|consen 369 TKRSDFGVAVLDGKLYAVGGFDG-EKSLNSVECYDPVTNKWTPVAPMLTR-----RSGHGVAVLGGKLYIIGGGDGSSNC 442 (571)
T ss_pred CccccceeEEECCEEEEEecccc-ccccccEEEecCCCCcccccCCCCcc-----eeeeEEEEECCEEEEEcCcCCCccc
Confidence 44444 77889999999998763 23334799999999999988 45552 25678889999999999976532
Q ss_pred --eEEEEEEC-CceeEEEEecCCCCCeeEEEEEEeCCCEEEEEecccCCccccCCcEEEEEeCCCCceeeeeEEEecCC-
Q 016891 274 --PVDIWVLM-GCWTKTFSFPRSVGDYVKALAYSKSGGKVLVDKFEYGEDEDINRWELFWYDLQNQGAAADQVTIHGVP- 349 (381)
Q Consensus 274 --~~~iW~l~-~~W~~~~~i~~~~~~~~~~~~~~~~g~~i~l~~~~~~~~~~~~~~~l~~yd~~t~~~~~~~v~~~~~~- 349 (381)
.++.+.-. +.|..+..+..- .....+++. ++. ||..+ |.+.......+..||+++++| ..+......
T Consensus 443 l~sve~YDP~t~~W~~~~~M~~~--R~~~g~a~~-~~~-iYvvG---G~~~~~~~~~VE~ydp~~~~W--~~v~~m~~~r 513 (571)
T KOG4441|consen 443 LNSVECYDPETNTWTLIAPMNTR--RSGFGVAVL-NGK-IYVVG---GFDGTSALSSVERYDPETNQW--TMVAPMTSPR 513 (571)
T ss_pred cceEEEEcCCCCceeecCCcccc--cccceEEEE-CCE-EEEEC---CccCCCccceEEEEcCCCCce--eEcccCcccc
Confidence 33333333 999988887721 122334444 454 88883 111111234589999999999 888422211
Q ss_pred CCceeEEEEeeceecCcCCCC
Q 016891 350 QGCRDTIVCVDSLVSLAACAG 370 (381)
Q Consensus 350 ~~~~~~~~y~~sl~~~~~~~~ 370 (381)
+. ..+...-..|.-+.++++
T Consensus 514 s~-~g~~~~~~~ly~vGG~~~ 533 (571)
T KOG4441|consen 514 SA-VGVVVLGGKLYAVGGFDG 533 (571)
T ss_pred cc-ccEEEECCEEEEEecccC
Confidence 22 334555555555544443
No 9
>PHA02790 Kelch-like protein; Provisional
Probab=99.21 E-value=2.4e-09 Score=104.92 Aligned_cols=187 Identities=9% Similarity=-0.048 Sum_probs=120.5
Q ss_pred CcEEEEccCCcceeeCCCCCCCCCCceEEEEEeEECCCCCEEEEEEEEEeecCccceEEEEEEcCCCcEEEcccCCCcce
Q 016891 119 NGIALWNPSTEEHLILPKFWGDLKDFMVVDGFGYDAVNDDYKVVRLVQLVIGNVGYTEIAVYSLRTNSWRRIRVDFPYYI 198 (381)
Q Consensus 119 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~d~~~~~ykVv~~~~~~~~~~~~~~~~vyss~t~~W~~~~~~~p~~~ 198 (381)
.....+||.+++|..+|+++...... ..+.++ =++.+++... +...++.|+..+++|..++ .+|...
T Consensus 287 ~~v~~Ydp~~~~W~~~~~m~~~r~~~-~~v~~~-------~~iYviGG~~----~~~sve~ydp~~n~W~~~~-~l~~~r 353 (480)
T PHA02790 287 NNAIAVNYISNNWIPIPPMNSPRLYA-SGVPAN-------NKLYVVGGLP----NPTSVERWFHGDAAWVNMP-SLLKPR 353 (480)
T ss_pred CeEEEEECCCCEEEECCCCCchhhcc-eEEEEC-------CEEEEECCcC----CCCceEEEECCCCeEEECC-CCCCCC
Confidence 45778999999999999886543221 122111 1455554321 1145899999999999998 666432
Q ss_pred ecCCCcEEECCeeEEEEeeCCCCCCcCEEEEEECCCCeeeeecCCCCCCCCCceeEEEEEECCeEEEEEecCCCceEEEE
Q 016891 199 LHGWDGTFADGHVHWLVTNNPEDYIENLIIAFNLKSEEFHEVPLPHLENRNDVLVMFVGNFSGCLYFSCLCNYPQPVDIW 278 (381)
Q Consensus 199 ~~~~~~v~~nG~lYwl~~~~~~~~~~~~i~~fD~~~e~~~~i~~P~~~~~~~~~~~~L~~~~G~L~~~~~~~~~~~~~iW 278 (381)
. ...++.++|.||.+++.... ...+..||+.+++|+.++.++... .....+..+|+|++++. ..+++
T Consensus 354 ~-~~~~~~~~g~IYviGG~~~~---~~~ve~ydp~~~~W~~~~~m~~~r----~~~~~~~~~~~IYv~GG-----~~e~y 420 (480)
T PHA02790 354 C-NPAVASINNVIYVIGGHSET---DTTTEYLLPNHDQWQFGPSTYYPH----YKSCALVFGRRLFLVGR-----NAEFY 420 (480)
T ss_pred c-ccEEEEECCEEEEecCcCCC---CccEEEEeCCCCEEEeCCCCCCcc----ccceEEEECCEEEEECC-----ceEEe
Confidence 2 11678899999999886432 136889999999999883332221 23466788999999984 34556
Q ss_pred EEC-CceeEEEEecCCCCCeeEEEEEEeCCCEEEEEecccCCccccCCcEEEEEeCCCCce
Q 016891 279 VLM-GCWTKTFSFPRSVGDYVKALAYSKSGGKVLVDKFEYGEDEDINRWELFWYDLQNQGA 338 (381)
Q Consensus 279 ~l~-~~W~~~~~i~~~~~~~~~~~~~~~~g~~i~l~~~~~~~~~~~~~~~l~~yd~~t~~~ 338 (381)
..+ ++|+.+..++. .......++. +|. |++.+ |.+....-..+..||+++++|
T Consensus 421 dp~~~~W~~~~~m~~--~r~~~~~~v~-~~~-IYviG---G~~~~~~~~~ve~Yd~~~~~W 474 (480)
T PHA02790 421 CESSNTWTLIDDPIY--PRDNPELIIV-DNK-LLLIG---GFYRGSYIDTIEVYNNRTYSW 474 (480)
T ss_pred cCCCCcEeEcCCCCC--CccccEEEEE-CCE-EEEEC---CcCCCcccceEEEEECCCCeE
Confidence 556 99998766552 1112223333 555 98884 111001124699999999999
No 10
>PHA03098 kelch-like protein; Provisional
Probab=99.20 E-value=1.8e-09 Score=107.64 Aligned_cols=199 Identities=13% Similarity=0.116 Sum_probs=124.9
Q ss_pred CcEEEEccCCcceeeCCCCCCCCCCceEEEEEeEECCCCCEEEEEEEEEeecCccceEEEEEEcCCCcEEEcccCCCcce
Q 016891 119 NGIALWNPSTEEHLILPKFWGDLKDFMVVDGFGYDAVNDDYKVVRLVQLVIGNVGYTEIAVYSLRTNSWRRIRVDFPYYI 198 (381)
Q Consensus 119 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~d~~~~~ykVv~~~~~~~~~~~~~~~~vyss~t~~W~~~~~~~p~~~ 198 (381)
+.++.+||.|++|..+|+.+...... ..+.++ + ++..++... .......+++|+..+++|+..+ .+|..
T Consensus 311 ~~v~~yd~~~~~W~~~~~~~~~R~~~-~~~~~~------~-~lyv~GG~~-~~~~~~~v~~yd~~~~~W~~~~-~lp~~- 379 (534)
T PHA03098 311 NSVVSYDTKTKSWNKVPELIYPRKNP-GVTVFN------N-RIYVIGGIY-NSISLNTVESWKPGESKWREEP-PLIFP- 379 (534)
T ss_pred ccEEEEeCCCCeeeECCCCCcccccc-eEEEEC------C-EEEEEeCCC-CCEecceEEEEcCCCCceeeCC-CcCcC-
Confidence 36899999999999999876433221 222221 1 455554321 1111267999999999999988 66543
Q ss_pred ecCC-CcEEECCeeEEEEeeCCCCCCcCEEEEEECCCCeeeee-cCCCCCCCCCceeEEEEEECCeEEEEEecCCCc---
Q 016891 199 LHGW-DGTFADGHVHWLVTNNPEDYIENLIIAFNLKSEEFHEV-PLPHLENRNDVLVMFVGNFSGCLYFSCLCNYPQ--- 273 (381)
Q Consensus 199 ~~~~-~~v~~nG~lYwl~~~~~~~~~~~~i~~fD~~~e~~~~i-~~P~~~~~~~~~~~~L~~~~G~L~~~~~~~~~~--- 273 (381)
+.. ..+.++|.+|.+++..........+..||+.+++|+.+ ++|... .....+..+|+++++++.....
T Consensus 380 -r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r-----~~~~~~~~~~~iyv~GG~~~~~~~~ 453 (534)
T PHA03098 380 -RYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISH-----YGGCAIYHDGKIYVIGGISYIDNIK 453 (534)
T ss_pred -CccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccc-----cCceEEEECCEEEEECCccCCCCCc
Confidence 222 66789999999987543222234789999999999988 455433 2335667899999998764221
Q ss_pred -eEEEEEEC---CceeEEEEecCCCCCeeEEEEEEeCCCEEEEEecccCCccccCCcEEEEEeCCCCceeeeeE
Q 016891 274 -PVDIWVLM---GCWTKTFSFPRSVGDYVKALAYSKSGGKVLVDKFEYGEDEDINRWELFWYDLQNQGAAADQV 343 (381)
Q Consensus 274 -~~~iW~l~---~~W~~~~~i~~~~~~~~~~~~~~~~g~~i~l~~~~~~~~~~~~~~~l~~yd~~t~~~~~~~v 343 (381)
.-.+|..+ .+|.++..++. .......++. ++. |++.+ |.+.......+..||+++++| +.+
T Consensus 454 ~~~~v~~yd~~~~~W~~~~~~~~--~r~~~~~~~~-~~~-iyv~G---G~~~~~~~~~v~~yd~~~~~W--~~~ 518 (534)
T PHA03098 454 VYNIVESYNPVTNKWTELSSLNF--PRINASLCIF-NNK-IYVVG---GDKYEYYINEIEVYDDKTNTW--TLF 518 (534)
T ss_pred ccceEEEecCCCCceeeCCCCCc--ccccceEEEE-CCE-EEEEc---CCcCCcccceeEEEeCCCCEE--Eec
Confidence 12366666 89998765541 1111222223 555 87773 111111134699999999999 877
No 11
>PLN02153 epithiospecifier protein
Probab=99.10 E-value=8.1e-08 Score=90.16 Aligned_cols=211 Identities=12% Similarity=0.038 Sum_probs=119.5
Q ss_pred CcEEEEccCCcceeeCCCCCCCCCC---ceEEEEEeEECCCCCEEEEEEEEEeecCccceEEEEEEcCCCcEEEcccCCC
Q 016891 119 NGIALWNPSTEEHLILPKFWGDLKD---FMVVDGFGYDAVNDDYKVVRLVQLVIGNVGYTEIAVYSLRTNSWRRIRVDFP 195 (381)
Q Consensus 119 ~~~~V~NP~T~~~~~LP~~~~~~~~---~~~~~~~~~d~~~~~ykVv~~~~~~~~~~~~~~~~vyss~t~~W~~~~~~~p 195 (381)
+.++++||.+.+|..+|+....... ....+.++ =+++.+.... .......+++|++++++|+.++ .++
T Consensus 50 ~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~~-------~~iyv~GG~~-~~~~~~~v~~yd~~t~~W~~~~-~~~ 120 (341)
T PLN02153 50 KDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAVG-------TKLYIFGGRD-EKREFSDFYSYDTVKNEWTFLT-KLD 120 (341)
T ss_pred CcEEEEECCCCEEEEcCccCCCCCCccCceEEEEEC-------CEEEEECCCC-CCCccCcEEEEECCCCEEEEec-cCC
Confidence 4689999999999999865321111 11112221 1455554311 1111257999999999999887 431
Q ss_pred c---ceecCC-CcEEECCeeEEEEeeCCCC-----CCcCEEEEEECCCCeeeeecCCCCCCCCCceeEEEEEECCeEEEE
Q 016891 196 Y---YILHGW-DGTFADGHVHWLVTNNPED-----YIENLIIAFNLKSEEFHEVPLPHLENRNDVLVMFVGNFSGCLYFS 266 (381)
Q Consensus 196 ~---~~~~~~-~~v~~nG~lYwl~~~~~~~-----~~~~~i~~fD~~~e~~~~i~~P~~~~~~~~~~~~L~~~~G~L~~~ 266 (381)
. ...+.. ..+..+|.||.+++..... .....+.+||+.+++|+.++.+...- .......++..+|+++++
T Consensus 121 ~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~l~~~~~~~-~~r~~~~~~~~~~~iyv~ 199 (341)
T PLN02153 121 EEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQLPDPGENF-EKRGGAGFAVVQGKIWVV 199 (341)
T ss_pred CCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccceEEEEECCCCeEeeCCCCCCCC-CCCCcceEEEECCeEEEE
Confidence 1 111222 5678899999998764221 01235889999999999874321100 001233567789999998
Q ss_pred EecCC-----------CceEEEEEEC-CceeEEEEecCCCC-CeeEEEEEEeCCCEEEEEecccCCcc-------ccCCc
Q 016891 267 CLCNY-----------PQPVDIWVLM-GCWTKTFSFPRSVG-DYVKALAYSKSGGKVLVDKFEYGEDE-------DINRW 326 (381)
Q Consensus 267 ~~~~~-----------~~~~~iW~l~-~~W~~~~~i~~~~~-~~~~~~~~~~~g~~i~l~~~~~~~~~-------~~~~~ 326 (381)
..... ...+.++.++ .+|+++......+. .......+. ++. |++.+-+. .++ .....
T Consensus 200 GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~g~~P~~r~~~~~~~~-~~~-iyv~GG~~-~~~~~~~~~~~~~~n 276 (341)
T PLN02153 200 YGFATSILPGGKSDYESNAVQFFDPASGKWTEVETTGAKPSARSVFAHAVV-GKY-IIIFGGEV-WPDLKGHLGPGTLSN 276 (341)
T ss_pred eccccccccCCccceecCceEEEEcCCCcEEeccccCCCCCCcceeeeEEE-CCE-EEEECccc-CCccccccccccccc
Confidence 75421 1133334444 89998765432111 112222222 344 77773110 000 00113
Q ss_pred EEEEEeCCCCceeeeeEE
Q 016891 327 ELFWYDLQNQGAAADQVT 344 (381)
Q Consensus 327 ~l~~yd~~t~~~~~~~v~ 344 (381)
.++.||+++++| +++.
T Consensus 277 ~v~~~d~~~~~W--~~~~ 292 (341)
T PLN02153 277 EGYALDTETLVW--EKLG 292 (341)
T ss_pred cEEEEEcCccEE--Eecc
Confidence 699999999999 8884
No 12
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=99.09 E-value=4.6e-08 Score=91.11 Aligned_cols=230 Identities=13% Similarity=0.104 Sum_probs=131.5
Q ss_pred cEEEE-ccCCc-ceeeCCCCCCCCCCceEEEEEeEECCCCCEEEEEEEEEeecCccceEEEEEEcCCCcE----EEcccC
Q 016891 120 GIALW-NPSTE-EHLILPKFWGDLKDFMVVDGFGYDAVNDDYKVVRLVQLVIGNVGYTEIAVYSLRTNSW----RRIRVD 193 (381)
Q Consensus 120 ~~~V~-NP~T~-~~~~LP~~~~~~~~~~~~~~~~~d~~~~~ykVv~~~~~~~~~~~~~~~~vyss~t~~W----~~~~~~ 193 (381)
.++++ +|..+ +|..+++++..... ...+.+ ++ +++.+... ........++.|+..++.| +.++ .
T Consensus 40 ~v~~~~~~~~~~~W~~~~~lp~~r~~-~~~~~~------~~-~lyviGG~-~~~~~~~~v~~~d~~~~~w~~~~~~~~-~ 109 (323)
T TIGR03548 40 GIYIAKDENSNLKWVKDGQLPYEAAY-GASVSV------EN-GIYYIGGS-NSSERFSSVYRITLDESKEELICETIG-N 109 (323)
T ss_pred eeEEEecCCCceeEEEcccCCccccc-eEEEEE------CC-EEEEEcCC-CCCCCceeEEEEEEcCCceeeeeeEcC-C
Confidence 45555 45433 78888876643321 112222 11 45555431 1111236789999999988 5566 5
Q ss_pred CCcceecCCCcEEECCeeEEEEeeCCCCCCcCEEEEEECCCCeeeeec-CCCCCCCCCceeEEEEEECCeEEEEEecCCC
Q 016891 194 FPYYILHGWDGTFADGHVHWLVTNNPEDYIENLIIAFNLKSEEFHEVP-LPHLENRNDVLVMFVGNFSGCLYFSCLCNYP 272 (381)
Q Consensus 194 ~p~~~~~~~~~v~~nG~lYwl~~~~~~~~~~~~i~~fD~~~e~~~~i~-~P~~~~~~~~~~~~L~~~~G~L~~~~~~~~~ 272 (381)
+|.... ...+++++|+||.+++..... ....+.+||+.+++|+.++ +|.... ....++..+|+|+++......
T Consensus 110 lp~~~~-~~~~~~~~~~iYv~GG~~~~~-~~~~v~~yd~~~~~W~~~~~~p~~~r----~~~~~~~~~~~iYv~GG~~~~ 183 (323)
T TIGR03548 110 LPFTFE-NGSACYKDGTLYVGGGNRNGK-PSNKSYLFNLETQEWFELPDFPGEPR----VQPVCVKLQNELYVFGGGSNI 183 (323)
T ss_pred CCcCcc-CceEEEECCEEEEEeCcCCCc-cCceEEEEcCCCCCeeECCCCCCCCC----CcceEEEECCEEEEEcCCCCc
Confidence 554322 126678999999998753221 1246899999999999884 664322 234556789999999986533
Q ss_pred ceEEEEEEC---CceeEEEEecC--CCCCe-eEEEEEEeCCCEEEEEecccCCcccc-----------------------
Q 016891 273 QPVDIWVLM---GCWTKTFSFPR--SVGDY-VKALAYSKSGGKVLVDKFEYGEDEDI----------------------- 323 (381)
Q Consensus 273 ~~~~iW~l~---~~W~~~~~i~~--~~~~~-~~~~~~~~~g~~i~l~~~~~~~~~~~----------------------- 323 (381)
...+++..+ .+|.++..+.. .+... .....+..++. |++.+ |.+...
T Consensus 184 ~~~~~~~yd~~~~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~-iyv~G---G~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (323)
T TIGR03548 184 AYTDGYKYSPKKNQWQKVADPTTDSEPISLLGAASIKINESL-LLCIG---GFNKDVYNDAVIDLATMKDESLKGYKKEY 259 (323)
T ss_pred cccceEEEecCCCeeEECCCCCCCCCceeccceeEEEECCCE-EEEEC---CcCHHHHHHHHhhhhhccchhhhhhHHHH
Confidence 234556666 89997665431 11111 11112222344 77773 111000
Q ss_pred ---------CCcEEEEEeCCCCceeeeeEE-Eec-CCCCceeEEEEeeceecCcCCCCCC
Q 016891 324 ---------NRWELFWYDLQNQGAAADQVT-IHG-VPQGCRDTIVCVDSLVSLAACAGRG 372 (381)
Q Consensus 324 ---------~~~~l~~yd~~t~~~~~~~v~-~~~-~~~~~~~~~~y~~sl~~~~~~~~~~ 372 (381)
..+.+.+||+++++| +.+. ++. .... ..+...-+.|.-+.+..++|
T Consensus 260 ~~~~~~~~~~~~~v~~yd~~~~~W--~~~~~~p~~~r~~-~~~~~~~~~iyv~GG~~~pg 316 (323)
T TIGR03548 260 FLKPPEWYNWNRKILIYNVRTGKW--KSIGNSPFFARCG-AALLLTGNNIFSINGELKPG 316 (323)
T ss_pred hCCCccccCcCceEEEEECCCCee--eEcccccccccCc-hheEEECCEEEEEeccccCC
Confidence 014699999999999 8884 221 1112 44666667777666555544
No 13
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=99.07 E-value=5.8e-08 Score=91.36 Aligned_cols=233 Identities=13% Similarity=0.149 Sum_probs=130.9
Q ss_pred CcEEEEcc--CCcceeeCCCCCCCCCCceEEEEEeEECCCCCEEEEEEEEEeecC--c---cceEEEEEEcCCCcEEEcc
Q 016891 119 NGIALWNP--STEEHLILPKFWGDLKDFMVVDGFGYDAVNDDYKVVRLVQLVIGN--V---GYTEIAVYSLRTNSWRRIR 191 (381)
Q Consensus 119 ~~~~V~NP--~T~~~~~LP~~~~~~~~~~~~~~~~~d~~~~~ykVv~~~~~~~~~--~---~~~~~~vyss~t~~W~~~~ 191 (381)
+.++++++ .+++|..+|+++.........+.++ + +|..+....... . ....++.|++.+++|+.++
T Consensus 29 ~~~~~~d~~~~~~~W~~l~~~p~~~R~~~~~~~~~-----~--~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~~W~~~~ 101 (346)
T TIGR03547 29 TSWYKLDLKKPSKGWQKIADFPGGPRNQAVAAAID-----G--KLYVFGGIGKANSEGSPQVFDDVYRYDPKKNSWQKLD 101 (346)
T ss_pred CeeEEEECCCCCCCceECCCCCCCCcccceEEEEC-----C--EEEEEeCCCCCCCCCcceecccEEEEECCCCEEecCC
Confidence 56777774 7889999998763211111222221 1 555554321111 0 1257999999999999987
Q ss_pred cCCCcceecCC-CcE-EECCeeEEEEeeCCCC---------------------------------CCcCEEEEEECCCCe
Q 016891 192 VDFPYYILHGW-DGT-FADGHVHWLVTNNPED---------------------------------YIENLIIAFNLKSEE 236 (381)
Q Consensus 192 ~~~p~~~~~~~-~~v-~~nG~lYwl~~~~~~~---------------------------------~~~~~i~~fD~~~e~ 236 (381)
..+|.. ... .++ .++|.||.+++..... .....+.+||+.+++
T Consensus 102 ~~~p~~--~~~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~YDp~t~~ 179 (346)
T TIGR03547 102 TRSPVG--LLGASGFSLHNGQAYFTGGVNKNIFDGYFADLSAADKDSEPKDKLIAAYFSQPPEDYFWNKNVLSYDPSTNQ 179 (346)
T ss_pred CCCCCc--ccceeEEEEeCCEEEEEcCcChHHHHHHHhhHhhcCccchhhhhhHHHHhCCChhHcCccceEEEEECCCCc
Confidence 222221 222 233 6899999998754210 001369999999999
Q ss_pred eeee-cCCCCCCCCCceeEEEEEECCeEEEEEecCCC--ceEEEEE--EC---CceeEEEEecCCC---C-CeeEEEEEE
Q 016891 237 FHEV-PLPHLENRNDVLVMFVGNFSGCLYFSCLCNYP--QPVDIWV--LM---GCWTKTFSFPRSV---G-DYVKALAYS 304 (381)
Q Consensus 237 ~~~i-~~P~~~~~~~~~~~~L~~~~G~L~~~~~~~~~--~~~~iW~--l~---~~W~~~~~i~~~~---~-~~~~~~~~~ 304 (381)
|+.+ ++|.... ....++..+|+|+++...... ...++|. ++ .+|..+..++... . ......++.
T Consensus 180 W~~~~~~p~~~r----~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~y~~~~~~~~W~~~~~m~~~r~~~~~~~~~~~a~~ 255 (346)
T TIGR03547 180 WRNLGENPFLGT----AGSAIVHKGNKLLLINGEIKPGLRTAEVKQYLFTGGKLEWNKLPPLPPPKSSSQEGLAGAFAGI 255 (346)
T ss_pred eeECccCCCCcC----CCceEEEECCEEEEEeeeeCCCccchheEEEEecCCCceeeecCCCCCCCCCccccccEEeeeE
Confidence 9988 5553221 234677889999999876421 1234554 43 5899877775211 0 011111223
Q ss_pred eCCCEEEEEecccCCcccc-----------------CCcEEEEEeCCCCceeeeeEEEecCCCCceeEEEEeeceecCcC
Q 016891 305 KSGGKVLVDKFEYGEDEDI-----------------NRWELFWYDLQNQGAAADQVTIHGVPQGCRDTIVCVDSLVSLAA 367 (381)
Q Consensus 305 ~~g~~i~l~~~~~~~~~~~-----------------~~~~l~~yd~~t~~~~~~~v~~~~~~~~~~~~~~y~~sl~~~~~ 367 (381)
.++. |++.+ |++... ....+.+||+++++| +.+.-....-....+....+.|.-+.+
T Consensus 256 ~~~~-Iyv~G---G~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W--~~~~~lp~~~~~~~~~~~~~~iyv~GG 329 (346)
T TIGR03547 256 SNGV-LLVAG---GANFPGAQENYKNGKLYAHEGLIKAWSSEVYALDNGKW--SKVGKLPQGLAYGVSVSWNNGVLLIGG 329 (346)
T ss_pred ECCE-EEEee---cCCCCCchhhhhcCCccccCCCCceeEeeEEEecCCcc--cccCCCCCCceeeEEEEcCCEEEEEec
Confidence 3555 88874 111000 012578999999999 888322211111334445566665555
Q ss_pred CCC
Q 016891 368 CAG 370 (381)
Q Consensus 368 ~~~ 370 (381)
...
T Consensus 330 ~~~ 332 (346)
T TIGR03547 330 ENS 332 (346)
T ss_pred cCC
Confidence 443
No 14
>PLN02193 nitrile-specifier protein
Probab=98.96 E-value=2.1e-07 Score=91.01 Aligned_cols=212 Identities=11% Similarity=0.011 Sum_probs=122.3
Q ss_pred CcEEEEccCCcceeeCCCCCCCCC--C-ceEEEEEeEECCCCCEEEEEEEEEeecCccceEEEEEEcCCCcEEEcccCCC
Q 016891 119 NGIALWNPSTEEHLILPKFWGDLK--D-FMVVDGFGYDAVNDDYKVVRLVQLVIGNVGYTEIAVYSLRTNSWRRIRVDFP 195 (381)
Q Consensus 119 ~~~~V~NP~T~~~~~LP~~~~~~~--~-~~~~~~~~~d~~~~~ykVv~~~~~~~~~~~~~~~~vyss~t~~W~~~~~~~p 195 (381)
+.++++||.+.+|..+|+....+. . ...++..+ + +++.+.... .......+++|++.+++|+.+. .++
T Consensus 193 ~~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~~------~-~lYvfGG~~-~~~~~ndv~~yD~~t~~W~~l~-~~~ 263 (470)
T PLN02193 193 KHLYVFDLETRTWSISPATGDVPHLSCLGVRMVSIG------S-TLYVFGGRD-ASRQYNGFYSFDTTTNEWKLLT-PVE 263 (470)
T ss_pred CcEEEEECCCCEEEeCCCCCCCCCCcccceEEEEEC------C-EEEEECCCC-CCCCCccEEEEECCCCEEEEcC-cCC
Confidence 358999999999999875421111 1 11111111 1 344443211 1111267999999999999987 431
Q ss_pred c-ceecCC-CcEEECCeeEEEEeeCCCCCCcCEEEEEECCCCeeeeecCCCCCCCCCceeEEEEEECCeEEEEEecCCCc
Q 016891 196 Y-YILHGW-DGTFADGHVHWLVTNNPEDYIENLIIAFNLKSEEFHEVPLPHLENRNDVLVMFVGNFSGCLYFSCLCNYPQ 273 (381)
Q Consensus 196 ~-~~~~~~-~~v~~nG~lYwl~~~~~~~~~~~~i~~fD~~~e~~~~i~~P~~~~~~~~~~~~L~~~~G~L~~~~~~~~~~ 273 (381)
. ...+.. ..+.+++.||..++.... .....+.+||+.+++|+.++.|..... ......++..+|+++++....+..
T Consensus 264 ~~P~~R~~h~~~~~~~~iYv~GG~~~~-~~~~~~~~yd~~t~~W~~~~~~~~~~~-~R~~~~~~~~~gkiyviGG~~g~~ 341 (470)
T PLN02193 264 EGPTPRSFHSMAADEENVYVFGGVSAT-ARLKTLDSYNIVDKKWFHCSTPGDSFS-IRGGAGLEVVQGKVWVVYGFNGCE 341 (470)
T ss_pred CCCCCccceEEEEECCEEEEECCCCCC-CCcceEEEEECCCCEEEeCCCCCCCCC-CCCCcEEEEECCcEEEEECCCCCc
Confidence 1 112222 566789999999876432 122368899999999998854321110 012345667899999998765322
Q ss_pred eEEEEEEC---CceeEEEEecCCC-CCeeEEEEEEeCCCEEEEEecccCCcccc------CCcEEEEEeCCCCceeeeeE
Q 016891 274 PVDIWVLM---GCWTKTFSFPRSV-GDYVKALAYSKSGGKVLVDKFEYGEDEDI------NRWELFWYDLQNQGAAADQV 343 (381)
Q Consensus 274 ~~~iW~l~---~~W~~~~~i~~~~-~~~~~~~~~~~~g~~i~l~~~~~~~~~~~------~~~~l~~yd~~t~~~~~~~v 343 (381)
.-++|.++ .+|.++..+...+ ........ .-++. |++.+-+...++.. ....+++||++|++| +++
T Consensus 342 ~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~~-~~~~~-iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~t~~W--~~~ 417 (470)
T PLN02193 342 VDDVHYYDPVQDKWTQVETFGVRPSERSVFASA-AVGKH-IVIFGGEIAMDPLAHVGPGQLTDGTFALDTETLQW--ERL 417 (470)
T ss_pred cCceEEEECCCCEEEEeccCCCCCCCcceeEEE-EECCE-EEEECCccCCccccccCccceeccEEEEEcCcCEE--EEc
Confidence 34566666 8999887653211 12222222 22444 77773110000000 012489999999999 888
Q ss_pred EE
Q 016891 344 TI 345 (381)
Q Consensus 344 ~~ 345 (381)
..
T Consensus 418 ~~ 419 (470)
T PLN02193 418 DK 419 (470)
T ss_pred cc
Confidence 53
No 15
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=98.93 E-value=3.6e-07 Score=86.92 Aligned_cols=244 Identities=14% Similarity=0.105 Sum_probs=133.9
Q ss_pred ccCcEEEEee--CCCcEEEEccC--CcceeeCCCCCCCCCCceEEEEEeEECCCCCEEEEEEEEEee-cC---cc-ceEE
Q 016891 107 SCNGLIAFKN--DENGIALWNPS--TEEHLILPKFWGDLKDFMVVDGFGYDAVNDDYKVVRLVQLVI-GN---VG-YTEI 177 (381)
Q Consensus 107 s~~GLl~~~~--~~~~~~V~NP~--T~~~~~LP~~~~~~~~~~~~~~~~~d~~~~~ykVv~~~~~~~-~~---~~-~~~~ 177 (381)
..++-|.+.. ....++++++. +++|..+|+.+.........+.++ + ++..+..... .+ .. ...+
T Consensus 36 ~~~~~iyv~gG~~~~~~~~~d~~~~~~~W~~l~~~p~~~r~~~~~v~~~-----~--~IYV~GG~~~~~~~~~~~~~~~v 108 (376)
T PRK14131 36 IDNNTVYVGLGSAGTSWYKLDLNAPSKGWTKIAAFPGGPREQAVAAFID-----G--KLYVFGGIGKTNSEGSPQVFDDV 108 (376)
T ss_pred EECCEEEEEeCCCCCeEEEEECCCCCCCeEECCcCCCCCcccceEEEEC-----C--EEEEEcCCCCCCCCCceeEcccE
Confidence 3455554432 23457777764 578999987653221111222221 1 3444433211 00 01 2579
Q ss_pred EEEEcCCCcEEEcccCCCcceecCCCcEE-ECCeeEEEEeeCCCC---------------------------------CC
Q 016891 178 AVYSLRTNSWRRIRVDFPYYILHGWDGTF-ADGHVHWLVTNNPED---------------------------------YI 223 (381)
Q Consensus 178 ~vyss~t~~W~~~~~~~p~~~~~~~~~v~-~nG~lYwl~~~~~~~---------------------------------~~ 223 (381)
++|+..+++|+.+....|.... ....+. .+|.||.+++..... ..
T Consensus 109 ~~YD~~~n~W~~~~~~~p~~~~-~~~~~~~~~~~IYv~GG~~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 187 (376)
T PRK14131 109 YKYDPKTNSWQKLDTRSPVGLA-GHVAVSLHNGKAYITGGVNKNIFDGYFEDLAAAGKDKTPKDKINDAYFDKKPEDYFF 187 (376)
T ss_pred EEEeCCCCEEEeCCCCCCCccc-ceEEEEeeCCEEEEECCCCHHHHHHHHhhhhhcccchhhhhhhHHHHhcCChhhcCc
Confidence 9999999999998721232211 113344 799999998753200 00
Q ss_pred cCEEEEEECCCCeeeee-cCCCCCCCCCceeEEEEEECCeEEEEEecC--CCceEEEEEEC-----CceeEEEEecCCC-
Q 016891 224 ENLIIAFNLKSEEFHEV-PLPHLENRNDVLVMFVGNFSGCLYFSCLCN--YPQPVDIWVLM-----GCWTKTFSFPRSV- 294 (381)
Q Consensus 224 ~~~i~~fD~~~e~~~~i-~~P~~~~~~~~~~~~L~~~~G~L~~~~~~~--~~~~~~iW~l~-----~~W~~~~~i~~~~- 294 (381)
...+.+||+.+++|+.+ ++|.... ....++..+++|+++.... +....++|..+ .+|.++..++...
T Consensus 188 ~~~v~~YD~~t~~W~~~~~~p~~~~----~~~a~v~~~~~iYv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~~~ 263 (376)
T PRK14131 188 NKEVLSYDPSTNQWKNAGESPFLGT----AGSAVVIKGNKLWLINGEIKPGLRTDAVKQGKFTGNNLKWQKLPDLPPAPG 263 (376)
T ss_pred CceEEEEECCCCeeeECCcCCCCCC----CcceEEEECCEEEEEeeeECCCcCChhheEEEecCCCcceeecCCCCCCCc
Confidence 13699999999999988 4553221 2335677899999998753 12245566443 7899888776211
Q ss_pred C----CeeEEEEEEeCCCEEEEEecccCCcccc-----------------CCcEEEEEeCCCCceeeeeEEEecCCCCce
Q 016891 295 G----DYVKALAYSKSGGKVLVDKFEYGEDEDI-----------------NRWELFWYDLQNQGAAADQVTIHGVPQGCR 353 (381)
Q Consensus 295 ~----~~~~~~~~~~~g~~i~l~~~~~~~~~~~-----------------~~~~l~~yd~~t~~~~~~~v~~~~~~~~~~ 353 (381)
+ ......++..++. |++.+ |++... ....+.+||+++++| +.+.-...+-...
T Consensus 264 ~~~~~~~~~~~a~~~~~~-iyv~G---G~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W--~~~~~lp~~r~~~ 337 (376)
T PRK14131 264 GSSQEGVAGAFAGYSNGV-LLVAG---GANFPGARENYQNGKLYAHEGLKKSWSDEIYALVNGKW--QKVGELPQGLAYG 337 (376)
T ss_pred CCcCCccceEeceeECCE-EEEee---ccCCCCChhhhhcCCcccccCCcceeehheEEecCCcc--cccCcCCCCccce
Confidence 1 1112222333555 88773 111000 001356899999999 8874222211114
Q ss_pred eEEEEeeceecCcCC
Q 016891 354 DTIVCVDSLVSLAAC 368 (381)
Q Consensus 354 ~~~~y~~sl~~~~~~ 368 (381)
.+...-+.|+-+.+.
T Consensus 338 ~av~~~~~iyv~GG~ 352 (376)
T PRK14131 338 VSVSWNNGVLLIGGE 352 (376)
T ss_pred EEEEeCCEEEEEcCC
Confidence 455566666666554
No 16
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B.
Probab=98.92 E-value=1.9e-10 Score=74.38 Aligned_cols=43 Identities=23% Similarity=0.466 Sum_probs=37.3
Q ss_pred CCCCcHHHHHHHHccCCccceeEEEeehhhhhhhccChhHHHH
Q 016891 1 MAGLPTDINIDILSRLSVKCLLRFKCVSKSFCSLIDSQEFIKI 43 (381)
Q Consensus 1 ~~~LPdDll~eIL~rLP~~~l~r~r~VcK~W~~li~~p~F~~~ 43 (381)
+..||+|++.+||++||++++.++++|||+|++++.++.+.+.
T Consensus 1 i~~LP~Eil~~If~~L~~~dl~~~~~vcr~w~~~~~~~~lW~~ 43 (47)
T PF12937_consen 1 ISSLPDEILLEIFSYLDPRDLLRLSLVCRRWRRIANDNSLWRR 43 (47)
T ss_dssp CCCS-HHHHHHHHTTS-HHHHHHHTTSSHHHHHHHTCCCHHHH
T ss_pred ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHCChhhhhh
Confidence 5789999999999999999999999999999999988866554
No 17
>PHA02790 Kelch-like protein; Provisional
Probab=98.89 E-value=9.2e-08 Score=93.78 Aligned_cols=167 Identities=10% Similarity=0.013 Sum_probs=113.3
Q ss_pred eEEEEEEcCCCcEEEcccCCCcceecCCCcEEECCeeEEEEeeCCCCCCcCEEEEEECCCCeeeee-cCCCCCCCCCcee
Q 016891 175 TEIAVYSLRTNSWRRIRVDFPYYILHGWDGTFADGHVHWLVTNNPEDYIENLIIAFNLKSEEFHEV-PLPHLENRNDVLV 253 (381)
Q Consensus 175 ~~~~vyss~t~~W~~~~~~~p~~~~~~~~~v~~nG~lYwl~~~~~~~~~~~~i~~fD~~~e~~~~i-~~P~~~~~~~~~~ 253 (381)
..++.|++.+++|..++ .++..... ...+.++|.||.+++.+.. ..+..||+.+++|+.+ ++|... ..
T Consensus 287 ~~v~~Ydp~~~~W~~~~-~m~~~r~~-~~~v~~~~~iYviGG~~~~----~sve~ydp~~n~W~~~~~l~~~r-----~~ 355 (480)
T PHA02790 287 NNAIAVNYISNNWIPIP-PMNSPRLY-ASGVPANNKLYVVGGLPNP----TSVERWFHGDAAWVNMPSLLKPR-----CN 355 (480)
T ss_pred CeEEEEECCCCEEEECC-CCCchhhc-ceEEEECCEEEEECCcCCC----CceEEEECCCCeEEECCCCCCCC-----cc
Confidence 57899999999999999 66543222 2667899999999986432 2689999999999987 555333 24
Q ss_pred EEEEEECCeEEEEEecCCC-ceEEEEEEC-CceeEEEEecCCCCCeeEEEEEEeCCCEEEEEecccCCccccCCcEEEEE
Q 016891 254 MFVGNFSGCLYFSCLCNYP-QPVDIWVLM-GCWTKTFSFPRSVGDYVKALAYSKSGGKVLVDKFEYGEDEDINRWELFWY 331 (381)
Q Consensus 254 ~~L~~~~G~L~~~~~~~~~-~~~~iW~l~-~~W~~~~~i~~~~~~~~~~~~~~~~g~~i~l~~~~~~~~~~~~~~~l~~y 331 (381)
...++++|+||++++.... ..++.|..+ ++|.....++. .......+ .-+|. |++. . ....+|
T Consensus 356 ~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~--~r~~~~~~-~~~~~-IYv~---------G--G~~e~y 420 (480)
T PHA02790 356 PAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYY--PHYKSCAL-VFGRR-LFLV---------G--RNAEFY 420 (480)
T ss_pred cEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCC--ccccceEE-EECCE-EEEE---------C--CceEEe
Confidence 5678899999999886532 345666666 89997655542 11122222 33454 9988 2 237789
Q ss_pred eCCCCceeeeeEEEecCCCCceeEEEEeeceecCcCCC
Q 016891 332 DLQNQGAAADQVTIHGVPQGCRDTIVCVDSLVSLAACA 369 (381)
Q Consensus 332 d~~t~~~~~~~v~~~~~~~~~~~~~~y~~sl~~~~~~~ 369 (381)
|+++++| +.+.-...+-....+..+.+.|.-+.+..
T Consensus 421 dp~~~~W--~~~~~m~~~r~~~~~~v~~~~IYviGG~~ 456 (480)
T PHA02790 421 CESSNTW--TLIDDPIYPRDNPELIIVDNKLLLIGGFY 456 (480)
T ss_pred cCCCCcE--eEcCCCCCCccccEEEEECCEEEEECCcC
Confidence 9999999 88743222212255677777776666544
No 18
>PLN02153 epithiospecifier protein
Probab=98.81 E-value=1.2e-06 Score=82.38 Aligned_cols=182 Identities=11% Similarity=0.046 Sum_probs=105.4
Q ss_pred eEEEEEEcCCCcEEEcccCCCc-ce-ecCC-CcEEECCeeEEEEeeCCCCCCcCEEEEEECCCCeeeeec-C-----CCC
Q 016891 175 TEIAVYSLRTNSWRRIRVDFPY-YI-LHGW-DGTFADGHVHWLVTNNPEDYIENLIIAFNLKSEEFHEVP-L-----PHL 245 (381)
Q Consensus 175 ~~~~vyss~t~~W~~~~~~~p~-~~-~~~~-~~v~~nG~lYwl~~~~~~~~~~~~i~~fD~~~e~~~~i~-~-----P~~ 245 (381)
..+++|+..+++|+.+. .++. .. .... ..+.++|+||.+++..... ....+.+||+.+++|+.++ + |..
T Consensus 50 ~~~~~yd~~~~~W~~~~-~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~-~~~~v~~yd~~t~~W~~~~~~~~~~~p~~ 127 (341)
T PLN02153 50 KDLYVFDFNTHTWSIAP-ANGDVPRISCLGVRMVAVGTKLYIFGGRDEKR-EFSDFYSYDTVKNEWTFLTKLDEEGGPEA 127 (341)
T ss_pred CcEEEEECCCCEEEEcC-ccCCCCCCccCceEEEEECCEEEEECCCCCCC-ccCcEEEEECCCCEEEEeccCCCCCCCCC
Confidence 47999999999999877 3221 11 1112 5678899999998764322 1236889999999999873 3 222
Q ss_pred CCCCCceeEEEEEECCeEEEEEecCCCc------e-EEEEEEC---CceeEEEEecCCC-CCeeEEEEEEeCCCEEEEEe
Q 016891 246 ENRNDVLVMFVGNFSGCLYFSCLCNYPQ------P-VDIWVLM---GCWTKTFSFPRSV-GDYVKALAYSKSGGKVLVDK 314 (381)
Q Consensus 246 ~~~~~~~~~~L~~~~G~L~~~~~~~~~~------~-~~iW~l~---~~W~~~~~i~~~~-~~~~~~~~~~~~g~~i~l~~ 314 (381)
. ....++..+++|+++....... . -+|+..+ .+|..+......+ ......+++. +++ |++..
T Consensus 128 R-----~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~l~~~~~~~~~r~~~~~~~~-~~~-iyv~G 200 (341)
T PLN02153 128 R-----TFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQLPDPGENFEKRGGAGFAVV-QGK-IWVVY 200 (341)
T ss_pred c-----eeeEEEEECCEEEEECCccCCCccCCCcccceEEEEECCCCeEeeCCCCCCCCCCCCcceEEEE-CCe-EEEEe
Confidence 1 2445677899999998864210 1 1455555 8899765443111 1222223333 555 76652
Q ss_pred cc-----cCCccccCCcEEEEEeCCCCceeeeeEEEec-CCC--CceeEEEEeeceecCcC
Q 016891 315 FE-----YGEDEDINRWELFWYDLQNQGAAADQVTIHG-VPQ--GCRDTIVCVDSLVSLAA 367 (381)
Q Consensus 315 ~~-----~~~~~~~~~~~l~~yd~~t~~~~~~~v~~~~-~~~--~~~~~~~y~~sl~~~~~ 367 (381)
-. .+.........+.+||+++++| +++...+ .+. ..+.+..+.+.|.-+.+
T Consensus 201 G~~~~~~~gG~~~~~~~~v~~yd~~~~~W--~~~~~~g~~P~~r~~~~~~~~~~~iyv~GG 259 (341)
T PLN02153 201 GFATSILPGGKSDYESNAVQFFDPASGKW--TEVETTGAKPSARSVFAHAVVGKYIIIFGG 259 (341)
T ss_pred ccccccccCCccceecCceEEEEcCCCcE--EeccccCCCCCCcceeeeEEECCEEEEECc
Confidence 00 0000001124599999999999 8885422 111 11344555555555544
No 19
>PLN02193 nitrile-specifier protein
Probab=98.77 E-value=2.7e-06 Score=83.27 Aligned_cols=227 Identities=14% Similarity=0.066 Sum_probs=126.6
Q ss_pred cEEEEccCC----cceeeCCCCCC-CCCCce-EEEEEeEECCCCCEEEEEEEEEeecCccc-eEEEEEEcCCCcEEEccc
Q 016891 120 GIALWNPST----EEHLILPKFWG-DLKDFM-VVDGFGYDAVNDDYKVVRLVQLVIGNVGY-TEIAVYSLRTNSWRRIRV 192 (381)
Q Consensus 120 ~~~V~NP~T----~~~~~LP~~~~-~~~~~~-~~~~~~~d~~~~~ykVv~~~~~~~~~~~~-~~~~vyss~t~~W~~~~~ 192 (381)
..++++|.+ .+|..+++... +.++.. ..+.++ + +++.+.......... ..+++|+.++++|+.++.
T Consensus 138 g~y~~~~~~~~~~~~W~~~~~~~~~P~pR~~h~~~~~~------~-~iyv~GG~~~~~~~~~~~v~~yD~~~~~W~~~~~ 210 (470)
T PLN02193 138 GAYISLPSTPKLLGKWIKVEQKGEGPGLRCSHGIAQVG------N-KIYSFGGEFTPNQPIDKHLYVFDLETRTWSISPA 210 (470)
T ss_pred EEEEecCCChhhhceEEEcccCCCCCCCccccEEEEEC------C-EEEEECCcCCCCCCeeCcEEEEECCCCEEEeCCC
Confidence 467888866 78998875321 111211 111111 1 444443211111112 469999999999998762
Q ss_pred --CCCcceecCC-CcEEECCeeEEEEeeCCCCCCcCEEEEEECCCCeeeeec-C---CCCCCCCCceeEEEEEECCeEEE
Q 016891 193 --DFPYYILHGW-DGTFADGHVHWLVTNNPEDYIENLIIAFNLKSEEFHEVP-L---PHLENRNDVLVMFVGNFSGCLYF 265 (381)
Q Consensus 193 --~~p~~~~~~~-~~v~~nG~lYwl~~~~~~~~~~~~i~~fD~~~e~~~~i~-~---P~~~~~~~~~~~~L~~~~G~L~~ 265 (381)
..|.. .+.. ..+.+++.||.+++.... .....+.+||+.+++|+.+. + |... ....++..+++|++
T Consensus 211 ~g~~P~~-~~~~~~~v~~~~~lYvfGG~~~~-~~~ndv~~yD~~t~~W~~l~~~~~~P~~R-----~~h~~~~~~~~iYv 283 (470)
T PLN02193 211 TGDVPHL-SCLGVRMVSIGSTLYVFGGRDAS-RQYNGFYSFDTTTNEWKLLTPVEEGPTPR-----SFHSMAADEENVYV 283 (470)
T ss_pred CCCCCCC-cccceEEEEECCEEEEECCCCCC-CCCccEEEEECCCCEEEEcCcCCCCCCCc-----cceEEEEECCEEEE
Confidence 12211 1112 567899999999875422 12235889999999999873 3 2222 23456678999999
Q ss_pred EEecCCCc-eEEEEEEC---CceeEEEEecCC-CCCeeEEEEEEeCCCEEEEEecccCCccccCCcEEEEEeCCCCceee
Q 016891 266 SCLCNYPQ-PVDIWVLM---GCWTKTFSFPRS-VGDYVKALAYSKSGGKVLVDKFEYGEDEDINRWELFWYDLQNQGAAA 340 (381)
Q Consensus 266 ~~~~~~~~-~~~iW~l~---~~W~~~~~i~~~-~~~~~~~~~~~~~g~~i~l~~~~~~~~~~~~~~~l~~yd~~t~~~~~ 340 (381)
+....... .-+++.++ .+|..+...... .......+.+. +++ |++.. |.+. .....+.+||+++++|
T Consensus 284 ~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~~~~~~~-~gk-iyviG---G~~g-~~~~dv~~yD~~t~~W-- 355 (470)
T PLN02193 284 FGGVSATARLKTLDSYNIVDKKWFHCSTPGDSFSIRGGAGLEVV-QGK-VWVVY---GFNG-CEVDDVHYYDPVQDKW-- 355 (470)
T ss_pred ECCCCCCCCcceEEEEECCCCEEEeCCCCCCCCCCCCCcEEEEE-CCc-EEEEE---CCCC-CccCceEEEECCCCEE--
Confidence 98875321 22455554 899876432211 11222233333 566 77762 1111 1124699999999999
Q ss_pred eeEEEec-CCC--CceeEEEEeeceecCcCC
Q 016891 341 DQVTIHG-VPQ--GCRDTIVCVDSLVSLAAC 368 (381)
Q Consensus 341 ~~v~~~~-~~~--~~~~~~~y~~sl~~~~~~ 368 (381)
+++...+ .+. ..+.+..+.+.|.-+.+.
T Consensus 356 ~~~~~~g~~P~~R~~~~~~~~~~~iyv~GG~ 386 (470)
T PLN02193 356 TQVETFGVRPSERSVFASAAVGKHIVIFGGE 386 (470)
T ss_pred EEeccCCCCCCCcceeEEEEECCEEEEECCc
Confidence 8885432 111 124455666666655544
No 20
>PHA03098 kelch-like protein; Provisional
Probab=98.77 E-value=4.9e-07 Score=90.25 Aligned_cols=159 Identities=17% Similarity=0.231 Sum_probs=102.6
Q ss_pred CcEEEEccCCcceeeCCCCCCCCCCceEEEEEeEECCCCCEEEEEEEEEeecCccceEEEEEEcCCCcEEEcccCCCcce
Q 016891 119 NGIALWNPSTEEHLILPKFWGDLKDFMVVDGFGYDAVNDDYKVVRLVQLVIGNVGYTEIAVYSLRTNSWRRIRVDFPYYI 198 (381)
Q Consensus 119 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~d~~~~~ykVv~~~~~~~~~~~~~~~~vyss~t~~W~~~~~~~p~~~ 198 (381)
..+.++||.|++|..+|+.+...... ..+.. ++ ++..++...........+++|++.+++|+.++ .+|...
T Consensus 358 ~~v~~yd~~~~~W~~~~~lp~~r~~~-~~~~~------~~-~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~-~~p~~r 428 (534)
T PHA03098 358 NTVESWKPGESKWREEPPLIFPRYNP-CVVNV------NN-LIYVIGGISKNDELLKTVECFSLNTNKWSKGS-PLPISH 428 (534)
T ss_pred ceEEEEcCCCCceeeCCCcCcCCccc-eEEEE------CC-EEEEECCcCCCCcccceEEEEeCCCCeeeecC-CCCccc
Confidence 46789999999999999876543221 11111 11 45444332111112267999999999999988 666433
Q ss_pred ecCCCcEEECCeeEEEEeeCCCC--CCcCEEEEEECCCCeeeeec-CCCCCCCCCceeEEEEEECCeEEEEEecCCCc-e
Q 016891 199 LHGWDGTFADGHVHWLVTNNPED--YIENLIIAFNLKSEEFHEVP-LPHLENRNDVLVMFVGNFSGCLYFSCLCNYPQ-P 274 (381)
Q Consensus 199 ~~~~~~v~~nG~lYwl~~~~~~~--~~~~~i~~fD~~~e~~~~i~-~P~~~~~~~~~~~~L~~~~G~L~~~~~~~~~~-~ 274 (381)
.. ...+.++|.+|.+++..... .....+.+||+.+++|+.++ +|... ....++..+|+|+++++..... .
T Consensus 429 ~~-~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r-----~~~~~~~~~~~iyv~GG~~~~~~~ 502 (534)
T PHA03098 429 YG-GCAIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPR-----INASLCIFNNKIYVVGGDKYEYYI 502 (534)
T ss_pred cC-ceEEEECCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCccc-----ccceEEEECCEEEEEcCCcCCccc
Confidence 21 26788999999998754221 11235999999999999883 33221 2345667799999998765321 2
Q ss_pred EEEEEEC---CceeEEEEecC
Q 016891 275 VDIWVLM---GCWTKTFSFPR 292 (381)
Q Consensus 275 ~~iW~l~---~~W~~~~~i~~ 292 (381)
-.|+..+ ..|..+...|+
T Consensus 503 ~~v~~yd~~~~~W~~~~~~p~ 523 (534)
T PHA03098 503 NEIEVYDDKTNTWTLFCKFPK 523 (534)
T ss_pred ceeEEEeCCCCEEEecCCCcc
Confidence 2455555 89998877664
No 21
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]. This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.
Probab=98.70 E-value=1.4e-09 Score=70.67 Aligned_cols=43 Identities=44% Similarity=0.522 Sum_probs=36.9
Q ss_pred CCCcHHHHHHHHccCCccceeEEEeehhhhhhhccChhHHHHH
Q 016891 2 AGLPTDINIDILSRLSVKCLLRFKCVSKSFCSLIDSQEFIKIH 44 (381)
Q Consensus 2 ~~LPdDll~eIL~rLP~~~l~r~r~VcK~W~~li~~p~F~~~~ 44 (381)
.+||+|++.+||.+||++++.+++.|||+|++++.++.+...+
T Consensus 4 ~~LP~~il~~Il~~l~~~~~~~l~~vsk~~~~~~~~~~~~~~~ 46 (48)
T PF00646_consen 4 SDLPDEILQEILSYLDPKDLLRLSLVSKRWRSLVDSPRLWKKI 46 (48)
T ss_dssp HHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTTHHHHHHH
T ss_pred HHCCHHHHHHHHHHCcHHHHHHHHHHhhHHHHHHcCCCccHHH
Confidence 4699999999999999999999999999999999999887654
No 22
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=98.70 E-value=1.5e-05 Score=75.80 Aligned_cols=156 Identities=18% Similarity=0.260 Sum_probs=94.2
Q ss_pred eEEEEEEcCCCcEEEcccCCCcceecCCCcEEECCeeEEEEeeCCCC--CCcCEEEEEECCCCeeeee-cCCCCCCCC-C
Q 016891 175 TEIAVYSLRTNSWRRIRVDFPYYILHGWDGTFADGHVHWLVTNNPED--YIENLIIAFNLKSEEFHEV-PLPHLENRN-D 250 (381)
Q Consensus 175 ~~~~vyss~t~~W~~~~~~~p~~~~~~~~~v~~nG~lYwl~~~~~~~--~~~~~i~~fD~~~e~~~~i-~~P~~~~~~-~ 250 (381)
..+++|+..++.|+.++ .+|.........+.++|.||.+++..... ........+|+.+.+|+.+ ++|...... .
T Consensus 189 ~~v~~YD~~t~~W~~~~-~~p~~~~~~~a~v~~~~~iYv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~~~~~~~ 267 (376)
T PRK14131 189 KEVLSYDPSTNQWKNAG-ESPFLGTAGSAVVIKGNKLWLINGEIKPGLRTDAVKQGKFTGNNLKWQKLPDLPPAPGGSSQ 267 (376)
T ss_pred ceEEEEECCCCeeeECC-cCCCCCCCcceEEEECCEEEEEeeeECCCcCChhheEEEecCCCcceeecCCCCCCCcCCcC
Confidence 46999999999999988 66642221225677899999999753221 1223456678899999887 455422110 0
Q ss_pred -c-eeEEEEEECCeEEEEEecCCC--------------------ceEEEEEEC-CceeEEEEecCCCCCeeEEEEEEeCC
Q 016891 251 -V-LVMFVGNFSGCLYFSCLCNYP--------------------QPVDIWVLM-GCWTKTFSFPRSVGDYVKALAYSKSG 307 (381)
Q Consensus 251 -~-~~~~L~~~~G~L~~~~~~~~~--------------------~~~~iW~l~-~~W~~~~~i~~~~~~~~~~~~~~~~g 307 (381)
. .....+.++|+|+++...... ...+++..+ ..|+++..++... ....++.-++
T Consensus 268 ~~~~~~~a~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~lp~~r---~~~~av~~~~ 344 (376)
T PRK14131 268 EGVAGAFAGYSNGVLLVAGGANFPGARENYQNGKLYAHEGLKKSWSDEIYALVNGKWQKVGELPQGL---AYGVSVSWNN 344 (376)
T ss_pred CccceEeceeECCEEEEeeccCCCCChhhhhcCCcccccCCcceeehheEEecCCcccccCcCCCCc---cceEEEEeCC
Confidence 0 112346689999999875421 023455556 8999876665211 1222344456
Q ss_pred CEEEEEecccCCccc-cCCcEEEEEeCCCCce
Q 016891 308 GKVLVDKFEYGEDED-INRWELFWYDLQNQGA 338 (381)
Q Consensus 308 ~~i~l~~~~~~~~~~-~~~~~l~~yd~~t~~~ 338 (381)
+ |++.+ |+... .....+..|+++++++
T Consensus 345 ~-iyv~G---G~~~~~~~~~~v~~~~~~~~~~ 372 (376)
T PRK14131 345 G-VLLIG---GETAGGKAVSDVTLLSWDGKKL 372 (376)
T ss_pred E-EEEEc---CCCCCCcEeeeEEEEEEcCCEE
Confidence 6 88873 11110 1123588999998887
No 23
>smart00256 FBOX A Receptor for Ubiquitination Targets.
Probab=98.65 E-value=2.9e-09 Score=66.63 Aligned_cols=39 Identities=49% Similarity=0.665 Sum_probs=36.8
Q ss_pred CcHHHHHHHHccCCccceeEEEeehhhhhhhccChhHHH
Q 016891 4 LPTDINIDILSRLSVKCLLRFKCVSKSFCSLIDSQEFIK 42 (381)
Q Consensus 4 LPdDll~eIL~rLP~~~l~r~r~VcK~W~~li~~p~F~~ 42 (381)
||+|++.+||.+|+++++.++++|||+|+.++.++.|.+
T Consensus 1 lP~~ll~~I~~~l~~~d~~~~~~vc~~~~~~~~~~~~~~ 39 (41)
T smart00256 1 LPDEILEEILSKLPPKDLLRLRKVSRRWRSLIDSHDFWF 39 (41)
T ss_pred CCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcChhhhh
Confidence 799999999999999999999999999999999988754
No 24
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=98.64 E-value=1.6e-05 Score=74.82 Aligned_cols=135 Identities=19% Similarity=0.338 Sum_probs=82.2
Q ss_pred eEEEEEEcCCCcEEEcccCCCcceecCCCcEEECCeeEEEEeeCCCCCCcCEEEEE--ECCCCeeeee-cCCCCCCC--C
Q 016891 175 TEIAVYSLRTNSWRRIRVDFPYYILHGWDGTFADGHVHWLVTNNPEDYIENLIIAF--NLKSEEFHEV-PLPHLENR--N 249 (381)
Q Consensus 175 ~~~~vyss~t~~W~~~~~~~p~~~~~~~~~v~~nG~lYwl~~~~~~~~~~~~i~~f--D~~~e~~~~i-~~P~~~~~--~ 249 (381)
..+++|++.+++|+.++ .+|.........+.++|+||.+++..........+..| |+.+++|+.+ ++|..... .
T Consensus 168 ~~v~~YDp~t~~W~~~~-~~p~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~y~~~~~~~~W~~~~~m~~~r~~~~~ 246 (346)
T TIGR03547 168 KNVLSYDPSTNQWRNLG-ENPFLGTAGSAIVHKGNKLLLINGEIKPGLRTAEVKQYLFTGGKLEWNKLPPLPPPKSSSQE 246 (346)
T ss_pred ceEEEEECCCCceeECc-cCCCCcCCCceEEEECCEEEEEeeeeCCCccchheEEEEecCCCceeeecCCCCCCCCCccc
Confidence 47999999999999998 66532111225577899999998764322111234445 4567799877 55532110 0
Q ss_pred CceeEEEEEECCeEEEEEecCCC--------------------ceEEEEEEC-CceeEEEEecCCCCCeeEEEEEEeCCC
Q 016891 250 DVLVMFVGNFSGCLYFSCLCNYP--------------------QPVDIWVLM-GCWTKTFSFPRSVGDYVKALAYSKSGG 308 (381)
Q Consensus 250 ~~~~~~L~~~~G~L~~~~~~~~~--------------------~~~~iW~l~-~~W~~~~~i~~~~~~~~~~~~~~~~g~ 308 (381)
.......+.++|+|+++...... ...++|..+ ++|+++..++... ....++.-++.
T Consensus 247 ~~~~~~a~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~lp~~~---~~~~~~~~~~~ 323 (346)
T TIGR03547 247 GLAGAFAGISNGVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEVYALDNGKWSKVGKLPQGL---AYGVSVSWNNG 323 (346)
T ss_pred cccEEeeeEECCEEEEeecCCCCCchhhhhcCCccccCCCCceeEeeEEEecCCcccccCCCCCCc---eeeEEEEcCCE
Confidence 01123466789999999875310 145677777 8999887766211 12223333555
Q ss_pred EEEEEe
Q 016891 309 KVLVDK 314 (381)
Q Consensus 309 ~i~l~~ 314 (381)
|++.+
T Consensus 324 -iyv~G 328 (346)
T TIGR03547 324 -VLLIG 328 (346)
T ss_pred -EEEEe
Confidence 87773
No 25
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=98.51 E-value=1.7e-05 Score=73.88 Aligned_cols=139 Identities=8% Similarity=-0.095 Sum_probs=83.7
Q ss_pred CcEEEEccCCcce----eeCCCCCCCCCCceEEEEEeEECCCCCEEEEEEEEEeecCccceEEEEEEcCCCcEEEcccCC
Q 016891 119 NGIALWNPSTEEH----LILPKFWGDLKDFMVVDGFGYDAVNDDYKVVRLVQLVIGNVGYTEIAVYSLRTNSWRRIRVDF 194 (381)
Q Consensus 119 ~~~~V~NP~T~~~----~~LP~~~~~~~~~~~~~~~~~d~~~~~ykVv~~~~~~~~~~~~~~~~vyss~t~~W~~~~~~~ 194 (381)
..++.+|+.+++| ..+|+.+...... ..+.+ + =++..+.... .......+++|++++++|+.++ .+
T Consensus 88 ~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~-~~~~~--~-----~~iYv~GG~~-~~~~~~~v~~yd~~~~~W~~~~-~~ 157 (323)
T TIGR03548 88 SSVYRITLDESKEELICETIGNLPFTFENG-SACYK--D-----GTLYVGGGNR-NGKPSNKSYLFNLETQEWFELP-DF 157 (323)
T ss_pred eeEEEEEEcCCceeeeeeEcCCCCcCccCc-eEEEE--C-----CEEEEEeCcC-CCccCceEEEEcCCCCCeeECC-CC
Confidence 4688899999987 6777766443221 11111 1 1455554311 1111267999999999999988 55
Q ss_pred CcceecCC-CcEEECCeeEEEEeeCCCCCCcCEEEEEECCCCeeeeecC-CCCCCCCC-ceeEEEEEECCeEEEEEecC
Q 016891 195 PYYILHGW-DGTFADGHVHWLVTNNPEDYIENLIIAFNLKSEEFHEVPL-PHLENRND-VLVMFVGNFSGCLYFSCLCN 270 (381)
Q Consensus 195 p~~~~~~~-~~v~~nG~lYwl~~~~~~~~~~~~i~~fD~~~e~~~~i~~-P~~~~~~~-~~~~~L~~~~G~L~~~~~~~ 270 (381)
|... +.. ..+.++|.||.+++..... ...+.+||+.+++|+.++. +....... .....++..+|+|+++...+
T Consensus 158 p~~~-r~~~~~~~~~~~iYv~GG~~~~~--~~~~~~yd~~~~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~ 233 (323)
T TIGR03548 158 PGEP-RVQPVCVKLQNELYVFGGGSNIA--YTDGYKYSPKKNQWQKVADPTTDSEPISLLGAASIKINESLLLCIGGFN 233 (323)
T ss_pred CCCC-CCcceEEEECCEEEEEcCCCCcc--ccceEEEecCCCeeEECCCCCCCCCceeccceeEEEECCCEEEEECCcC
Confidence 5322 222 4567999999998764321 1246899999999998842 21100000 01223444578999988764
No 26
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=98.05 E-value=0.00013 Score=63.23 Aligned_cols=221 Identities=11% Similarity=0.081 Sum_probs=120.7
Q ss_pred CCCcEEEEccCCcceeeCCCCCCC--CCCceEEEEEeEECCCCCEEEEEE-------EEEeecCccceEEEEEEcCCCcE
Q 016891 117 DENGIALWNPSTEEHLILPKFWGD--LKDFMVVDGFGYDAVNDDYKVVRL-------VQLVIGNVGYTEIAVYSLRTNSW 187 (381)
Q Consensus 117 ~~~~~~V~NP~T~~~~~LP~~~~~--~~~~~~~~~~~~d~~~~~ykVv~~-------~~~~~~~~~~~~~~vyss~t~~W 187 (381)
.+-.+.|.|..+-+|.++|+--.+ ....+.. .-|. .-+..||.. ....+++..+...+-|+.+++.|
T Consensus 42 ~piDVH~lNa~~~RWtk~pp~~~ka~i~~~yp~--VPyq--RYGHtvV~y~d~~yvWGGRND~egaCN~Ly~fDp~t~~W 117 (392)
T KOG4693|consen 42 DPIDVHVLNAENYRWTKMPPGITKATIESPYPA--VPYQ--RYGHTVVEYQDKAYVWGGRNDDEGACNLLYEFDPETNVW 117 (392)
T ss_pred CcceeEEeeccceeEEecCcccccccccCCCCc--cchh--hcCceEEEEcceEEEEcCccCcccccceeeeeccccccc
Confidence 456789999999999999973211 1111110 0000 111223332 11111122237899999999999
Q ss_pred EEcccCCCcceecCC-CcEEECCeeEEEEeeCCCC-CCcCEEEEEECCCCeeeee---cCCCCCCCCCceeEEEEEECCe
Q 016891 188 RRIRVDFPYYILHGW-DGTFADGHVHWLVTNNPED-YIENLIIAFNLKSEEFHEV---PLPHLENRNDVLVMFVGNFSGC 262 (381)
Q Consensus 188 ~~~~~~~p~~~~~~~-~~v~~nG~lYwl~~~~~~~-~~~~~i~~fD~~~e~~~~i---~~P~~~~~~~~~~~~L~~~~G~ 262 (381)
+..++.-.....+.. ++.++++.+|..++..+.. .-..-+-++|+++.+|+.+ ..|+.-. ........+|+
T Consensus 118 ~~p~v~G~vPgaRDGHsAcV~gn~MyiFGGye~~a~~FS~d~h~ld~~TmtWr~~~Tkg~PprwR----DFH~a~~~~~~ 193 (392)
T KOG4693|consen 118 KKPEVEGFVPGARDGHSACVWGNQMYIFGGYEEDAQRFSQDTHVLDFATMTWREMHTKGDPPRWR----DFHTASVIDGM 193 (392)
T ss_pred cccceeeecCCccCCceeeEECcEEEEecChHHHHHhhhccceeEeccceeeeehhccCCCchhh----hhhhhhhccce
Confidence 987632111122233 6778889999888654211 1112478999999999998 3354332 13345556788
Q ss_pred EEEEEecCC----------C--ceEEEEEEC-CceeEEEEecCCCCCeeEEEEEEeCCCEEEEEecccCCccccCCcEEE
Q 016891 263 LYFSCLCNY----------P--QPVDIWVLM-GCWTKTFSFPRSVGDYVKALAYSKSGGKVLVDKFEYGEDEDINRWELF 329 (381)
Q Consensus 263 L~~~~~~~~----------~--~~~~iW~l~-~~W~~~~~i~~~~~~~~~~~~~~~~g~~i~l~~~~~~~~~~~~~~~l~ 329 (381)
.++.....+ . .+|..-.|. +-|.+...-...++..-....+.-+|+ +++-+ +|-..-...-..++
T Consensus 194 MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~~T~aW~r~p~~~~~P~GRRSHS~fvYng~-~Y~FG-GYng~ln~HfndLy 271 (392)
T KOG4693|consen 194 MYIFGGRSDESGPFHSIHEQYCDTIMALDLATGAWTRTPENTMKPGGRRSHSTFVYNGK-MYMFG-GYNGTLNVHFNDLY 271 (392)
T ss_pred EEEeccccccCCCccchhhhhcceeEEEeccccccccCCCCCcCCCcccccceEEEcce-EEEec-ccchhhhhhhccee
Confidence 888876542 1 123333333 889875322222321222222223566 65552 01000001124599
Q ss_pred EEeCCCCceeeeeEEEecCC
Q 016891 330 WYDLQNQGAAADQVTIHGVP 349 (381)
Q Consensus 330 ~yd~~t~~~~~~~v~~~~~~ 349 (381)
.||++|..| .+|+..+..
T Consensus 272 ~FdP~t~~W--~~I~~~Gk~ 289 (392)
T KOG4693|consen 272 CFDPKTSMW--SVISVRGKY 289 (392)
T ss_pred ecccccchh--eeeeccCCC
Confidence 999999999 999876643
No 27
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=98.00 E-value=0.00039 Score=64.03 Aligned_cols=216 Identities=13% Similarity=0.098 Sum_probs=121.3
Q ss_pred CcEEEEccCCcceeeCCCCCCCCCCceEEEEEeEECCCCCEEEEEEE--EEeecCc----cceEEEEEEcCCCcEEEccc
Q 016891 119 NGIALWNPSTEEHLILPKFWGDLKDFMVVDGFGYDAVNDDYKVVRLV--QLVIGNV----GYTEIAVYSLRTNSWRRIRV 192 (381)
Q Consensus 119 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~d~~~~~ykVv~~~--~~~~~~~----~~~~~~vyss~t~~W~~~~~ 192 (381)
+.+|++|--+.+|+.+-.+....++... .+...+ ++ .+.+. .+..-+. .+..+++|+..++.|..+..
T Consensus 98 ndLy~Yn~k~~eWkk~~spn~P~pRssh--q~va~~-s~---~l~~fGGEfaSPnq~qF~HYkD~W~fd~~trkweql~~ 171 (521)
T KOG1230|consen 98 NDLYSYNTKKNEWKKVVSPNAPPPRSSH--QAVAVP-SN---ILWLFGGEFASPNQEQFHHYKDLWLFDLKTRKWEQLEF 171 (521)
T ss_pred eeeeEEeccccceeEeccCCCcCCCccc--eeEEec-cC---eEEEeccccCCcchhhhhhhhheeeeeeccchheeecc
Confidence 4689999999999998433332322211 111111 12 22222 1211111 22689999999999999872
Q ss_pred CCCcceecCC-CcEEECCeeEEEEeeCC--CCC-CcCEEEEEECCCCeeeeecCCCCCCCCCceeEEEEEE-CCeEEEEE
Q 016891 193 DFPYYILHGW-DGTFADGHVHWLVTNNP--EDY-IENLIIAFNLKSEEFHEVPLPHLENRNDVLVMFVGNF-SGCLYFSC 267 (381)
Q Consensus 193 ~~p~~~~~~~-~~v~~nG~lYwl~~~~~--~~~-~~~~i~~fD~~~e~~~~i~~P~~~~~~~~~~~~L~~~-~G~L~~~~ 267 (381)
.-....+.. +-|.....|.-.++-.+ ..+ ...-+-+||+.+-+|+.+..+.. .-.....+.+.+. +|.+++-+
T Consensus 172 -~g~PS~RSGHRMvawK~~lilFGGFhd~nr~y~YyNDvy~FdLdtykW~Klepsga-~PtpRSGcq~~vtpqg~i~vyG 249 (521)
T KOG1230|consen 172 -GGGPSPRSGHRMVAWKRQLILFGGFHDSNRDYIYYNDVYAFDLDTYKWSKLEPSGA-GPTPRSGCQFSVTPQGGIVVYG 249 (521)
T ss_pred -CCCCCCCccceeEEeeeeEEEEcceecCCCceEEeeeeEEEeccceeeeeccCCCC-CCCCCCcceEEecCCCcEEEEc
Confidence 111111111 44554444443332211 111 11248899999999999954321 1111233455555 78777766
Q ss_pred ecC----------CCceEEEEEEC--------CceeEEEEec--CCCCCeeEEEEEEeCCCEEEEEecccCCccccC---
Q 016891 268 LCN----------YPQPVDIWVLM--------GCWTKTFSFP--RSVGDYVKALAYSKSGGKVLVDKFEYGEDEDIN--- 324 (381)
Q Consensus 268 ~~~----------~~~~~~iW~l~--------~~W~~~~~i~--~~~~~~~~~~~~~~~g~~i~l~~~~~~~~~~~~--- 324 (381)
.+. +..+-++|.|+ ..|.++..+. +.+ +.-.-++++.++..+++-+- ||....
T Consensus 250 GYsK~~~kK~~dKG~~hsDmf~L~p~~~~~dKw~W~kvkp~g~kPsp-Rsgfsv~va~n~kal~FGGV---~D~eeeeEs 325 (521)
T KOG1230|consen 250 GYSKQRVKKDVDKGTRHSDMFLLKPEDGREDKWVWTKVKPSGVKPSP-RSGFSVAVAKNHKALFFGGV---CDLEEEEES 325 (521)
T ss_pred chhHhhhhhhhhcCceeeeeeeecCCcCCCcceeEeeccCCCCCCCC-CCceeEEEecCCceEEecce---ecccccchh
Confidence 542 33467999999 4688887776 222 34456778888776666521 110011
Q ss_pred -----CcEEEEEeCCCCceeeeeEEEecC
Q 016891 325 -----RWELFWYDLQNQGAAADQVTIHGV 348 (381)
Q Consensus 325 -----~~~l~~yd~~t~~~~~~~v~~~~~ 348 (381)
.+.|+.||+..|+| .+-++++.
T Consensus 326 l~g~F~NDLy~fdlt~nrW--~~~qlq~~ 352 (521)
T KOG1230|consen 326 LSGEFFNDLYFFDLTRNRW--SEGQLQGK 352 (521)
T ss_pred hhhhhhhhhhheecccchh--hHhhhccC
Confidence 23489999999999 66666553
No 28
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=97.87 E-value=0.003 Score=62.02 Aligned_cols=212 Identities=12% Similarity=0.007 Sum_probs=124.2
Q ss_pred cEEEEccCCcceeeCCCCCCCCCC-ce-EEEEEeEECCCCCEEEEEEEEEeecCccceEEEEEEcCCCcEEEcccCCCc-
Q 016891 120 GIALWNPSTEEHLILPKFWGDLKD-FM-VVDGFGYDAVNDDYKVVRLVQLVIGNVGYTEIAVYSLRTNSWRRIRVDFPY- 196 (381)
Q Consensus 120 ~~~V~NP~T~~~~~LP~~~~~~~~-~~-~~~~~~~d~~~~~ykVv~~~~~~~~~~~~~~~~vyss~t~~W~~~~~~~p~- 196 (381)
.++|+|-.++.|............ .. ..+.++ + +++.+...........+++.|+..|++|+.+. ....
T Consensus 89 dl~~~d~~~~~w~~~~~~g~~p~~r~g~~~~~~~------~-~l~lfGG~~~~~~~~~~l~~~d~~t~~W~~l~-~~~~~ 160 (482)
T KOG0379|consen 89 DLYVLDLESQLWTKPAATGDEPSPRYGHSLSAVG------D-KLYLFGGTDKKYRNLNELHSLDLSTRTWSLLS-PTGDP 160 (482)
T ss_pred eeEEeecCCcccccccccCCCCCcccceeEEEEC------C-eEEEEccccCCCCChhheEeccCCCCcEEEec-CcCCC
Confidence 599999999888887644332211 11 111221 2 33334321111112368999999999999887 2221
Q ss_pred ceecCC-CcEEECCeeEEEEeeCCCCCCcCEEEEEECCCCeeeeecCCCCCCCCCceeEEEEEECCeEEEEEecC-C-Cc
Q 016891 197 YILHGW-DGTFADGHVHWLVTNNPEDYIENLIIAFNLKSEEFHEVPLPHLENRNDVLVMFVGNFSGCLYFSCLCN-Y-PQ 273 (381)
Q Consensus 197 ~~~~~~-~~v~~nG~lYwl~~~~~~~~~~~~i~~fD~~~e~~~~i~~P~~~~~~~~~~~~L~~~~G~L~~~~~~~-~-~~ 273 (381)
...+.. ..+.++.++|..++.+........+-+||+.+.+|..+......-. ......++..+++++++.... + ..
T Consensus 161 P~~r~~Hs~~~~g~~l~vfGG~~~~~~~~ndl~i~d~~~~~W~~~~~~g~~P~-pR~gH~~~~~~~~~~v~gG~~~~~~~ 239 (482)
T KOG0379|consen 161 PPPRAGHSATVVGTKLVVFGGIGGTGDSLNDLHIYDLETSTWSELDTQGEAPS-PRYGHAMVVVGNKLLVFGGGDDGDVY 239 (482)
T ss_pred CCCcccceEEEECCEEEEECCccCcccceeeeeeeccccccceecccCCCCCC-CCCCceEEEECCeEEEEeccccCCce
Confidence 122222 6667778888888765433345579999999999998833211100 123456777888988888765 2 22
Q ss_pred eEEEEEEC---CceeEEEEecCCCC-CeeEEEEEEeCCCEEEEEecccCCccc-c-CCcEEEEEeCCCCceeeeeEEEec
Q 016891 274 PVDIWVLM---GCWTKTFSFPRSVG-DYVKALAYSKSGGKVLVDKFEYGEDED-I-NRWELFWYDLQNQGAAADQVTIHG 347 (381)
Q Consensus 274 ~~~iW~l~---~~W~~~~~i~~~~~-~~~~~~~~~~~g~~i~l~~~~~~~~~~-~-~~~~l~~yd~~t~~~~~~~v~~~~ 347 (381)
--++|.++ .+|.+.......+. ...+...+ .++.+++.+ |+... . .-..++.||++++.| .++...+
T Consensus 240 l~D~~~ldl~~~~W~~~~~~g~~p~~R~~h~~~~--~~~~~~l~g---G~~~~~~~~l~~~~~l~~~~~~w--~~~~~~~ 312 (482)
T KOG0379|consen 240 LNDVHILDLSTWEWKLLPTGGDLPSPRSGHSLTV--SGDHLLLFG---GGTDPKQEPLGDLYGLDLETLVW--SKVESVG 312 (482)
T ss_pred ecceEeeecccceeeeccccCCCCCCcceeeeEE--ECCEEEEEc---CCcccccccccccccccccccce--eeeeccc
Confidence 34899999 66774433332222 33333332 344476663 22111 1 234699999999999 8885443
No 29
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=97.76 E-value=0.00084 Score=58.41 Aligned_cols=132 Identities=16% Similarity=0.201 Sum_probs=85.8
Q ss_pred eEEEEEEcCCCcEEEccc--CCCcceecCCCcEEECCeeEEEEeeCCCC--------CCcCEEEEEECCCCeeeeec---
Q 016891 175 TEIAVYSLRTNSWRRIRV--DFPYYILHGWDGTFADGHVHWLVTNNPED--------YIENLIIAFNLKSEEFHEVP--- 241 (381)
Q Consensus 175 ~~~~vyss~t~~W~~~~~--~~p~~~~~~~~~v~~nG~lYwl~~~~~~~--------~~~~~i~~fD~~~e~~~~i~--- 241 (381)
..+++++..|-+|+.+.. .+|.. .-...++.++|.+|..++..+.. .....|+++|+.++.|...+
T Consensus 157 ~d~h~ld~~TmtWr~~~Tkg~Pprw-RDFH~a~~~~~~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~~T~aW~r~p~~~ 235 (392)
T KOG4693|consen 157 QDTHVLDFATMTWREMHTKGDPPRW-RDFHTASVIDGMMYIFGGRSDESGPFHSIHEQYCDTIMALDLATGAWTRTPENT 235 (392)
T ss_pred ccceeEeccceeeeehhccCCCchh-hhhhhhhhccceEEEeccccccCCCccchhhhhcceeEEEeccccccccCCCCC
Confidence 678999999999999872 22221 11226778889999998754321 12346999999999997651
Q ss_pred -CCCCCCCCCceeEEEEEECCeEEEEEecCCC---ceEEEEEEC---CceeEEEEecCCCCCeeEEEEEEeCCCEEEEE
Q 016891 242 -LPHLENRNDVLVMFVGNFSGCLYFSCLCNYP---QPVDIWVLM---GCWTKTFSFPRSVGDYVKALAYSKSGGKVLVD 313 (381)
Q Consensus 242 -~P~~~~~~~~~~~~L~~~~G~L~~~~~~~~~---~~~~iW~l~---~~W~~~~~i~~~~~~~~~~~~~~~~g~~i~l~ 313 (381)
.|.+. ......+++|++++.....+. .--++|..+ ..|.++..-...+...-+-.++..+++ |+|-
T Consensus 236 ~~P~GR-----RSHS~fvYng~~Y~FGGYng~ln~HfndLy~FdP~t~~W~~I~~~Gk~P~aRRRqC~~v~g~k-v~LF 308 (392)
T KOG4693|consen 236 MKPGGR-----RSHSTFVYNGKMYMFGGYNGTLNVHFNDLYCFDPKTSMWSVISVRGKYPSARRRQCSVVSGGK-VYLF 308 (392)
T ss_pred cCCCcc-----cccceEEEcceEEEecccchhhhhhhcceeecccccchheeeeccCCCCCcccceeEEEECCE-EEEe
Confidence 22222 234677899999999988742 134789988 789987654433322223333333454 7776
No 30
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=97.74 E-value=0.002 Score=63.27 Aligned_cols=182 Identities=12% Similarity=0.080 Sum_probs=111.5
Q ss_pred EEEEEEcCCCcEEEcccCCCcceecCC-CcEEECCeeEEEEeeCCCCCCcCEEEEEECCCCeeeee----cCCCCCCCCC
Q 016891 176 EIAVYSLRTNSWRRIRVDFPYYILHGW-DGTFADGHVHWLVTNNPEDYIENLIIAFNLKSEEFHEV----PLPHLENRND 250 (381)
Q Consensus 176 ~~~vyss~t~~W~~~~~~~p~~~~~~~-~~v~~nG~lYwl~~~~~~~~~~~~i~~fD~~~e~~~~i----~~P~~~~~~~ 250 (381)
.+++++.++..|......-........ ..+.++..||..++..........|-+||+.+.+|..+ ..|+..
T Consensus 89 dl~~~d~~~~~w~~~~~~g~~p~~r~g~~~~~~~~~l~lfGG~~~~~~~~~~l~~~d~~t~~W~~l~~~~~~P~~r---- 164 (482)
T KOG0379|consen 89 DLYVLDLESQLWTKPAATGDEPSPRYGHSLSAVGDKLYLFGGTDKKYRNLNELHSLDLSTRTWSLLSPTGDPPPPR---- 164 (482)
T ss_pred eeEEeecCCcccccccccCCCCCcccceeEEEECCeEEEEccccCCCCChhheEeccCCCCcEEEecCcCCCCCCc----
Confidence 589999999999876522111122222 66788999999998764222234699999999999988 223333
Q ss_pred ceeEEEEEECCeEEEEEecCCC--ceEEEEEEC---CceeEEEEecCCCC-CeeEEEEEEeCCCEEEEEecccCCccccC
Q 016891 251 VLVMFVGNFSGCLYFSCLCNYP--QPVDIWVLM---GCWTKTFSFPRSVG-DYVKALAYSKSGGKVLVDKFEYGEDEDIN 324 (381)
Q Consensus 251 ~~~~~L~~~~G~L~~~~~~~~~--~~~~iW~l~---~~W~~~~~i~~~~~-~~~~~~~~~~~g~~i~l~~~~~~~~~~~~ 324 (381)
....++..+.+|++....... ...++|+++ ..|.++....+.+. +..+.+.+. ++..+++-+ +|..+..
T Consensus 165 -~~Hs~~~~g~~l~vfGG~~~~~~~~ndl~i~d~~~~~W~~~~~~g~~P~pR~gH~~~~~-~~~~~v~gG---~~~~~~~ 239 (482)
T KOG0379|consen 165 -AGHSATVVGTKLVVFGGIGGTGDSLNDLHIYDLETSTWSELDTQGEAPSPRYGHAMVVV-GNKLLVFGG---GDDGDVY 239 (482)
T ss_pred -ccceEEEECCEEEEECCccCcccceeeeeeeccccccceecccCCCCCCCCCCceEEEE-CCeEEEEec---cccCCce
Confidence 344677778899998887643 267899988 78999888874332 333444444 344233332 1101111
Q ss_pred CcEEEEEeCCCCceeeeeEEEecC-C---CCceeEEEEeeceecCcCCC
Q 016891 325 RWELFWYDLQNQGAAADQVTIHGV-P---QGCRDTIVCVDSLVSLAACA 369 (381)
Q Consensus 325 ~~~l~~yd~~t~~~~~~~v~~~~~-~---~~~~~~~~y~~sl~~~~~~~ 369 (381)
-..+..+|+.+.+| +++...+. + .+ +.....-+.++-+.++.
T Consensus 240 l~D~~~ldl~~~~W--~~~~~~g~~p~~R~~-h~~~~~~~~~~l~gG~~ 285 (482)
T KOG0379|consen 240 LNDVHILDLSTWEW--KLLPTGGDLPSPRSG-HSLTVSGDHLLLFGGGT 285 (482)
T ss_pred ecceEeeeccccee--eeccccCCCCCCcce-eeeEEECCEEEEEcCCc
Confidence 23499999999999 76633221 1 22 44444444455444443
No 31
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=97.59 E-value=0.00036 Score=62.66 Aligned_cols=43 Identities=26% Similarity=0.327 Sum_probs=38.4
Q ss_pred CCCCc----HHHHHHHHccCCccceeEEEeehhhhhhhccChhHHHH
Q 016891 1 MAGLP----TDINIDILSRLSVKCLLRFKCVSKSFCSLIDSQEFIKI 43 (381)
Q Consensus 1 ~~~LP----dDll~eIL~rLP~~~l~r~r~VcK~W~~li~~p~F~~~ 43 (381)
++.|| +++.+.||+.|...+|..+..|||+|+.+++++-..+.
T Consensus 75 i~~lP~~gl~hi~e~ilsyld~~sLc~celv~k~W~r~l~dg~~WKk 121 (499)
T KOG0281|consen 75 ITALPEQGLDHIAENILSYLDALSLCACELVCKEWKRVLSDGMLWKK 121 (499)
T ss_pred HHhcccccHHHHHHHHHHhcchhhhhHHHHHHHHHHHHhccchHHHH
Confidence 35789 99999999999999999999999999999999865443
No 32
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.07 E-value=0.0001 Score=65.44 Aligned_cols=40 Identities=33% Similarity=0.458 Sum_probs=36.2
Q ss_pred CCCcHHHHHHHHccCCccceeEEEeehhhhhhhccChhHH
Q 016891 2 AGLPTDINIDILSRLSVKCLLRFKCVSKSFCSLIDSQEFI 41 (381)
Q Consensus 2 ~~LPdDll~eIL~rLP~~~l~r~r~VcK~W~~li~~p~F~ 41 (381)
..||||+++.||+.||.|+|.++..|||||.++.++....
T Consensus 99 ~slpDEill~IFs~L~kk~LL~~~~VC~Rfyr~~~de~lW 138 (419)
T KOG2120|consen 99 DSLPDEILLGIFSCLCKKELLKVSGVCKRFYRLASDESLW 138 (419)
T ss_pred ccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhccccccce
Confidence 4699999999999999999999999999999998776643
No 33
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=96.62 E-value=0.00047 Score=61.41 Aligned_cols=46 Identities=15% Similarity=0.332 Sum_probs=40.4
Q ss_pred CCCCcHHHHHHHHccCC-----ccceeEEEeehhhhhhhccChhHHHHHHh
Q 016891 1 MAGLPTDINIDILSRLS-----VKCLLRFKCVSKSFCSLIDSQEFIKIHLK 46 (381)
Q Consensus 1 ~~~LPdDll~eIL~rLP-----~~~l~r~r~VcK~W~~li~~p~F~~~~~~ 46 (381)
|+.||||+|.+||.++= .++|.++.+|||.|+-...+|.|.+....
T Consensus 107 ~~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~~~R~~~lwR~aC~ 157 (366)
T KOG2997|consen 107 ISVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYKCARDPELWRLACL 157 (366)
T ss_pred hhhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHHHHcChHHHHHHHH
Confidence 46799999999998765 48999999999999999999999887543
No 34
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=96.46 E-value=0.18 Score=46.99 Aligned_cols=164 Identities=10% Similarity=0.069 Sum_probs=97.2
Q ss_pred eEEEEEEcCCCcEEEcccCCCcceecCC-CcEEEC-CeeEEEEeeCCCC-----CCcCEEEEEECCCCeeeeecCCCCCC
Q 016891 175 TEIAVYSLRTNSWRRIRVDFPYYILHGW-DGTFAD-GHVHWLVTNNPED-----YIENLIIAFNLKSEEFHEVPLPHLEN 247 (381)
Q Consensus 175 ~~~~vyss~t~~W~~~~~~~p~~~~~~~-~~v~~n-G~lYwl~~~~~~~-----~~~~~i~~fD~~~e~~~~i~~P~~~~ 247 (381)
..+..|+.++++|+.+. .+.....+.. ..|.+- |.+|..++..... +-.--+-.||+.+.+|..+.++-...
T Consensus 98 ndLy~Yn~k~~eWkk~~-spn~P~pRsshq~va~~s~~l~~fGGEfaSPnq~qF~HYkD~W~fd~~trkweql~~~g~PS 176 (521)
T KOG1230|consen 98 NDLYSYNTKKNEWKKVV-SPNAPPPRSSHQAVAVPSNILWLFGGEFASPNQEQFHHYKDLWLFDLKTRKWEQLEFGGGPS 176 (521)
T ss_pred eeeeEEeccccceeEec-cCCCcCCCccceeEEeccCeEEEeccccCCcchhhhhhhhheeeeeeccchheeeccCCCCC
Confidence 57889999999999987 4332233333 445554 6665555443211 00113789999999999997765433
Q ss_pred CCCceeEEEEEECCeEEEEEecCCC-----ceEEEEEEC---CceeEEEEecCCCC-CeeEEEEEEeCCCEEEEEe-cc-
Q 016891 248 RNDVLVMFVGNFSGCLYFSCLCNYP-----QPVDIWVLM---GCWTKTFSFPRSVG-DYVKALAYSKSGGKVLVDK-FE- 316 (381)
Q Consensus 248 ~~~~~~~~L~~~~G~L~~~~~~~~~-----~~~~iW~l~---~~W~~~~~i~~~~~-~~~~~~~~~~~g~~i~l~~-~~- 316 (381)
. .....++..+.+|.+.+...+. ..-+||..+ ..|.++..-...+. +.-.-+.+.+.|+ |++.+ +.
T Consensus 177 ~--RSGHRMvawK~~lilFGGFhd~nr~y~YyNDvy~FdLdtykW~Klepsga~PtpRSGcq~~vtpqg~-i~vyGGYsK 253 (521)
T KOG1230|consen 177 P--RSGHRMVAWKRQLILFGGFHDSNRDYIYYNDVYAFDLDTYKWSKLEPSGAGPTPRSGCQFSVTPQGG-IVVYGGYSK 253 (521)
T ss_pred C--CccceeEEeeeeEEEEcceecCCCceEEeeeeEEEeccceeeeeccCCCCCCCCCCcceEEecCCCc-EEEEcchhH
Confidence 2 2345677788888888766432 134777777 89998876222111 2223455566788 66652 10
Q ss_pred cCC----ccccCCcEEEEEeCCC-----CceeeeeEE
Q 016891 317 YGE----DEDINRWELFWYDLQN-----QGAAADQVT 344 (381)
Q Consensus 317 ~~~----~~~~~~~~l~~yd~~t-----~~~~~~~v~ 344 (381)
..- +.-.....++..++++ -+| .+|+
T Consensus 254 ~~~kK~~dKG~~hsDmf~L~p~~~~~dKw~W--~kvk 288 (521)
T KOG1230|consen 254 QRVKKDVDKGTRHSDMFLLKPEDGREDKWVW--TKVK 288 (521)
T ss_pred hhhhhhhhcCceeeeeeeecCCcCCCcceeE--eecc
Confidence 000 1101233489999999 567 6763
No 35
>PF13964 Kelch_6: Kelch motif
Probab=96.44 E-value=0.0063 Score=39.40 Aligned_cols=41 Identities=10% Similarity=0.291 Sum_probs=32.6
Q ss_pred CcEEECCeeEEEEeeCCCCCCcCEEEEEECCCCeeeee-cCC
Q 016891 203 DGTFADGHVHWLVTNNPEDYIENLIIAFNLKSEEFHEV-PLP 243 (381)
Q Consensus 203 ~~v~~nG~lYwl~~~~~~~~~~~~i~~fD~~~e~~~~i-~~P 243 (381)
+.|.++|.||.+++..........+..||+.+++|+.+ ++|
T Consensus 6 s~v~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~mp 47 (50)
T PF13964_consen 6 SAVVVGGKIYVFGGYDNSGKYSNDVERYDPETNTWEQLPPMP 47 (50)
T ss_pred EEEEECCEEEEECCCCCCCCccccEEEEcCCCCcEEECCCCC
Confidence 56889999999998765333345799999999999988 444
No 36
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=96.19 E-value=0.012 Score=37.31 Aligned_cols=41 Identities=10% Similarity=0.280 Sum_probs=33.2
Q ss_pred CcEEECCeeEEEEeeCCCCCCcCEEEEEECCCCeeeee-cCC
Q 016891 203 DGTFADGHVHWLVTNNPEDYIENLIIAFNLKSEEFHEV-PLP 243 (381)
Q Consensus 203 ~~v~~nG~lYwl~~~~~~~~~~~~i~~fD~~~e~~~~i-~~P 243 (381)
..+.++|.||.+++..........+..||+.+++|+.+ ++|
T Consensus 6 ~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~mp 47 (47)
T PF01344_consen 6 AAVVVGNKIYVIGGYDGNNQPTNSVEVYDPETNTWEELPPMP 47 (47)
T ss_dssp EEEEETTEEEEEEEBESTSSBEEEEEEEETTTTEEEEEEEES
T ss_pred EEEEECCEEEEEeeecccCceeeeEEEEeCCCCEEEEcCCCC
Confidence 67889999999998776344456899999999999987 443
No 37
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=95.20 E-value=2.7 Score=41.97 Aligned_cols=42 Identities=26% Similarity=0.442 Sum_probs=37.9
Q ss_pred CCCCcHHHHHHHHccCCccceeEEEeehhhhhhhccChhHHH
Q 016891 1 MAGLPTDINIDILSRLSVKCLLRFKCVSKSFCSLIDSQEFIK 42 (381)
Q Consensus 1 ~~~LPdDll~eIL~rLP~~~l~r~r~VcK~W~~li~~p~F~~ 42 (381)
+..||-++...||..|+++++.+++.||+.|+.+..+.....
T Consensus 108 i~~lp~el~~~il~~Ld~~~l~~~~~v~~~w~~~~~~~~~~~ 149 (537)
T KOG0274|consen 108 LSLLPSELSLHILSFLDGRDLLAVRQVCRNWNKLLDDDKVWW 149 (537)
T ss_pred hhcccchhcccccccCCHHHhhhhhhhcchhhhhhhccchhh
Confidence 467999999999999999999999999999999998766555
No 38
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=94.87 E-value=3.3 Score=39.34 Aligned_cols=100 Identities=10% Similarity=0.145 Sum_probs=68.9
Q ss_pred EEEEEECCCCeeeeecCCCCCCCCCceeEEEEEECCeEEEEEecCCCceEEEEEEC-CceeEEEEecCCCCCeeEEEEEE
Q 016891 226 LIIAFNLKSEEFHEVPLPHLENRNDVLVMFVGNFSGCLYFSCLCNYPQPVDIWVLM-GCWTKTFSFPRSVGDYVKALAYS 304 (381)
Q Consensus 226 ~i~~fD~~~e~~~~i~~P~~~~~~~~~~~~L~~~~G~L~~~~~~~~~~~~~iW~l~-~~W~~~~~i~~~~~~~~~~~~~~ 304 (381)
++.+||+.+.+...+..|.+.... ....+-+.-+|...++.+..+ +|.+-..+ .+|..-.+|+ ....-+++.
T Consensus 281 y~ysyDle~ak~~k~~~~~g~e~~-~~e~FeVShd~~fia~~G~~G--~I~lLhakT~eli~s~Kie----G~v~~~~fs 353 (514)
T KOG2055|consen 281 YLYSYDLETAKVTKLKPPYGVEEK-SMERFEVSHDSNFIAIAGNNG--HIHLLHAKTKELITSFKIE----GVVSDFTFS 353 (514)
T ss_pred EEEEeeccccccccccCCCCcccc-hhheeEecCCCCeEEEcccCc--eEEeehhhhhhhhheeeec----cEEeeEEEe
Confidence 899999999999999888766521 111122222455555555444 67776666 8999888887 445667777
Q ss_pred eCCCEEEEEecccCCccccCCcEEEEEeCCCCceeeeeE
Q 016891 305 KSGGKVLVDKFEYGEDEDINRWELFWYDLQNQGAAADQV 343 (381)
Q Consensus 305 ~~g~~i~l~~~~~~~~~~~~~~~l~~yd~~t~~~~~~~v 343 (381)
.+|+.|++. .....|+++|++++.. ...
T Consensus 354 Sdsk~l~~~---------~~~GeV~v~nl~~~~~--~~r 381 (514)
T KOG2055|consen 354 SDSKELLAS---------GGTGEVYVWNLRQNSC--LHR 381 (514)
T ss_pred cCCcEEEEE---------cCCceEEEEecCCcce--EEE
Confidence 888866666 3445899999999988 555
No 39
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=94.84 E-value=0.081 Score=33.94 Aligned_cols=40 Identities=13% Similarity=0.207 Sum_probs=31.4
Q ss_pred CcEEECCeeEEEEee--CCCCCCcCEEEEEECCCCeeeeecC
Q 016891 203 DGTFADGHVHWLVTN--NPEDYIENLIIAFNLKSEEFHEVPL 242 (381)
Q Consensus 203 ~~v~~nG~lYwl~~~--~~~~~~~~~i~~fD~~~e~~~~i~~ 242 (381)
..++++|+||..++. +........+..||+.+++|+.++.
T Consensus 6 s~~~~~~kiyv~GG~~~~~~~~~~~~v~~~d~~t~~W~~~~~ 47 (49)
T PF07646_consen 6 SAVVLDGKIYVFGGYGTDNGGSSSNDVWVFDTETNQWTELSP 47 (49)
T ss_pred EEEEECCEEEEECCcccCCCCcccceeEEEECCCCEEeecCC
Confidence 568899999999987 3333345579999999999998743
No 40
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=94.70 E-value=2.3 Score=37.85 Aligned_cols=124 Identities=15% Similarity=0.210 Sum_probs=77.8
Q ss_pred CcEEECCeeEEEEeeCCCCCCcCEEEEEECCCCeee-eecCCCCCCCC-------CceeEEEEEECCeEEEEEecCCC-c
Q 016891 203 DGTFADGHVHWLVTNNPEDYIENLIIAFNLKSEEFH-EVPLPHLENRN-------DVLVMFVGNFSGCLYFSCLCNYP-Q 273 (381)
Q Consensus 203 ~~v~~nG~lYwl~~~~~~~~~~~~i~~fD~~~e~~~-~i~~P~~~~~~-------~~~~~~L~~~~G~L~~~~~~~~~-~ 273 (381)
..|+.||.+|....... .|+.||+.+++-. ...+|...-.+ ....+.+++-+..|-++....+. +
T Consensus 73 G~vVYngslYY~~~~s~------~IvkydL~t~~v~~~~~L~~A~~~n~~~y~~~~~t~iD~AvDE~GLWvIYat~~~~g 146 (250)
T PF02191_consen 73 GHVVYNGSLYYNKYNSR------NIVKYDLTTRSVVARRELPGAGYNNRFPYYWSGYTDIDFAVDENGLWVIYATEDNNG 146 (250)
T ss_pred CeEEECCcEEEEecCCc------eEEEEECcCCcEEEEEECCccccccccceecCCCceEEEEEcCCCEEEEEecCCCCC
Confidence 56788999999887543 8999999999887 66777643221 12346777777788888776543 2
Q ss_pred eEEEEEEC-------CceeEEEEec-CCCCCeeEEEEEEeCCCEEEEEecccCCccccCCcEEEEEeCCCCceeeeeEEE
Q 016891 274 PVDIWVLM-------GCWTKTFSFP-RSVGDYVKALAYSKSGGKVLVDKFEYGEDEDINRWELFWYDLQNQGAAADQVTI 345 (381)
Q Consensus 274 ~~~iW~l~-------~~W~~~~~i~-~~~~~~~~~~~~~~~g~~i~l~~~~~~~~~~~~~~~l~~yd~~t~~~~~~~v~~ 345 (381)
.+.|-.|+ ..|.-- ++ +..+. ++.-.|- ++.... ....+...-+.||+.+++- +.+.+
T Consensus 147 ~ivvskld~~tL~v~~tw~T~--~~k~~~~n-----aFmvCGv-LY~~~s----~~~~~~~I~yafDt~t~~~--~~~~i 212 (250)
T PF02191_consen 147 NIVVSKLDPETLSVEQTWNTS--YPKRSAGN-----AFMVCGV-LYATDS----YDTRDTEIFYAFDTYTGKE--EDVSI 212 (250)
T ss_pred cEEEEeeCcccCceEEEEEec--cCchhhcc-----eeeEeeE-EEEEEE----CCCCCcEEEEEEECCCCce--eceee
Confidence 57777777 455521 22 11221 2222344 555521 0001244578999999999 87766
Q ss_pred e
Q 016891 346 H 346 (381)
Q Consensus 346 ~ 346 (381)
.
T Consensus 213 ~ 213 (250)
T PF02191_consen 213 P 213 (250)
T ss_pred e
Confidence 4
No 41
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=93.74 E-value=4.3 Score=35.34 Aligned_cols=188 Identities=14% Similarity=0.130 Sum_probs=95.5
Q ss_pred cCcEEEEeeCCCcEEEEccCCcceeeCCCCCCCCCCceEEEEEeEECCCCCEEEEEEEEEeecCccceEEEEEEcCCC--
Q 016891 108 CNGLIAFKNDENGIALWNPSTEEHLILPKFWGDLKDFMVVDGFGYDAVNDDYKVVRLVQLVIGNVGYTEIAVYSLRTN-- 185 (381)
Q Consensus 108 ~~GLl~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~d~~~~~ykVv~~~~~~~~~~~~~~~~vyss~t~-- 185 (381)
.+|.+++......++.+|+.||+...--..+...... . .. . +-+|+.... + ..+..++.+++
T Consensus 35 ~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~-~---~~----~-~~~v~v~~~----~---~~l~~~d~~tG~~ 98 (238)
T PF13360_consen 35 DGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGA-P---VV----D-GGRVYVGTS----D---GSLYALDAKTGKV 98 (238)
T ss_dssp ETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSG-E---EE----E-TTEEEEEET----T---SEEEEEETTTSCE
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEeeccccccce-e---ee----c-ccccccccc----e---eeeEecccCCcce
Confidence 6788877777888999999999876543332211111 0 00 0 112222210 0 25677777776
Q ss_pred cEE-EcccCCCcceecCCCcEEECCeeEEEEeeCCCCCCcCEEEEEECCCCe--eeee-cCCCCCCC---CCceeEEEEE
Q 016891 186 SWR-RIRVDFPYYILHGWDGTFADGHVHWLVTNNPEDYIENLIIAFNLKSEE--FHEV-PLPHLENR---NDVLVMFVGN 258 (381)
Q Consensus 186 ~W~-~~~~~~p~~~~~~~~~v~~nG~lYwl~~~~~~~~~~~~i~~fD~~~e~--~~~i-~~P~~~~~---~~~~~~~L~~ 258 (381)
.|+ ......+............++.+|.....+ .|.++|+.+.+ |..- ..|..... .......+..
T Consensus 99 ~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-------~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (238)
T PF13360_consen 99 LWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSG-------KLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVI 171 (238)
T ss_dssp EEEEEE-SSCTCSTB--SEEEEETTEEEEEETCS-------EEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEEC
T ss_pred eeeeccccccccccccccCceEecCEEEEEeccC-------cEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEE
Confidence 698 444111111111113334466777666444 79999988654 4432 33332110 0011234444
Q ss_pred ECCeEEEEEecCCCceEEEEEEC-C--ceeEEEEecCCCCCeeEEEEEEeCCCEEEEEecccCCccccCCcEEEEEeCCC
Q 016891 259 FSGCLYFSCLCNYPQPVDIWVLM-G--CWTKTFSFPRSVGDYVKALAYSKSGGKVLVDKFEYGEDEDINRWELFWYDLQN 335 (381)
Q Consensus 259 ~~G~L~~~~~~~~~~~~~iW~l~-~--~W~~~~~i~~~~~~~~~~~~~~~~g~~i~l~~~~~~~~~~~~~~~l~~yd~~t 335 (381)
.+|.+++...... .+.+ .++ . .|.+. +. . .... ....++.|++. ....+++++|++|
T Consensus 172 ~~~~v~~~~~~g~--~~~~-d~~tg~~~w~~~--~~----~-~~~~-~~~~~~~l~~~---------~~~~~l~~~d~~t 231 (238)
T PF13360_consen 172 SDGRVYVSSGDGR--VVAV-DLATGEKLWSKP--IS----G-IYSL-PSVDGGTLYVT---------SSDGRLYALDLKT 231 (238)
T ss_dssp CTTEEEEECCTSS--EEEE-ETTTTEEEEEEC--SS------ECEC-EECCCTEEEEE---------ETTTEEEEEETTT
T ss_pred ECCEEEEEcCCCe--EEEE-ECCCCCEEEEec--CC----C-ccCC-ceeeCCEEEEE---------eCCCEEEEEECCC
Confidence 4675555544432 3445 444 2 36322 22 1 1111 23466657777 4467899999999
Q ss_pred Cce
Q 016891 336 QGA 338 (381)
Q Consensus 336 ~~~ 338 (381)
++.
T Consensus 232 G~~ 234 (238)
T PF13360_consen 232 GKV 234 (238)
T ss_dssp TEE
T ss_pred CCE
Confidence 987
No 42
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=93.68 E-value=1.6 Score=38.56 Aligned_cols=165 Identities=15% Similarity=0.149 Sum_probs=94.3
Q ss_pred eEEEEEEcCCCcEEEcccCCCcceecCCCcEEECCeeEEEEeeCCCCCCcCEEEEEECCC----CeeeeecCCCCCCCCC
Q 016891 175 TEIAVYSLRTNSWRRIRVDFPYYILHGWDGTFADGHVHWLVTNNPEDYIENLIIAFNLKS----EEFHEVPLPHLENRND 250 (381)
Q Consensus 175 ~~~~vyss~t~~W~~~~~~~p~~~~~~~~~v~~nG~lYwl~~~~~~~~~~~~i~~fD~~~----e~~~~i~~P~~~~~~~ 250 (381)
.-..+|+..+++++.+.. .....+....+.-||.+.-.++...+ ...+-.|++.+ ..|... +.. ....
T Consensus 46 a~s~~yD~~tn~~rpl~v--~td~FCSgg~~L~dG~ll~tGG~~~G---~~~ir~~~p~~~~~~~~w~e~--~~~-m~~~ 117 (243)
T PF07250_consen 46 AHSVEYDPNTNTFRPLTV--QTDTFCSGGAFLPDGRLLQTGGDNDG---NKAIRIFTPCTSDGTCDWTES--PND-MQSG 117 (243)
T ss_pred EEEEEEecCCCcEEeccC--CCCCcccCcCCCCCCCEEEeCCCCcc---ccceEEEecCCCCCCCCceEC--ccc-ccCC
Confidence 446689999999998762 22233333445568887766655432 23577788764 456543 221 1112
Q ss_pred ceeEEEEEE-CCeEEEEEecCCCceEEEEEEC------CceeEEEEec-CCCCCeeEEEEEEeCCCEEEEEecccCCccc
Q 016891 251 VLVMFVGNF-SGCLYFSCLCNYPQPVDIWVLM------GCWTKTFSFP-RSVGDYVKALAYSKSGGKVLVDKFEYGEDED 322 (381)
Q Consensus 251 ~~~~~L~~~-~G~L~~~~~~~~~~~~~iW~l~------~~W~~~~~i~-~~~~~~~~~~~~~~~g~~i~l~~~~~~~~~~ 322 (381)
++.+....+ +|++.++...... ..+.|--+ ..|....... ......+-.+.+.++|+ ||+.
T Consensus 118 RWYpT~~~L~DG~vlIvGG~~~~-t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~-lFi~--------- 186 (243)
T PF07250_consen 118 RWYPTATTLPDGRVLIVGGSNNP-TYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGN-LFIF--------- 186 (243)
T ss_pred CccccceECCCCCEEEEeCcCCC-cccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCC-EEEE---------
Confidence 466667766 7999999988754 55665442 1121111111 11112333456677998 8877
Q ss_pred cCCcEEEEEeCCCCceeeeeEEEecCCCCceeEEEEeecee
Q 016891 323 INRWELFWYDLQNQGAAADQVTIHGVPQGCRDTIVCVDSLV 363 (381)
Q Consensus 323 ~~~~~l~~yd~~t~~~~~~~v~~~~~~~~~~~~~~y~~sl~ 363 (381)
.+ ..-.+||.+++++ ++.+ +..+.. .+.++...+-+
T Consensus 187 an-~~s~i~d~~~n~v-~~~l--P~lPg~-~R~YP~sgssv 222 (243)
T PF07250_consen 187 AN-RGSIIYDYKTNTV-VRTL--PDLPGG-PRNYPASGSSV 222 (243)
T ss_pred Ec-CCcEEEeCCCCeE-EeeC--CCCCCC-ceecCCCcceE
Confidence 23 3477889999976 1344 444444 56777777655
No 43
>smart00284 OLF Olfactomedin-like domains.
Probab=93.58 E-value=5.1 Score=35.66 Aligned_cols=124 Identities=16% Similarity=0.169 Sum_probs=76.3
Q ss_pred CcEEECCeeEEEEeeCCCCCCcCEEEEEECCCCeeeee-cCCCCCCCC-------CceeEEEEEECCeEEEEEecCC-Cc
Q 016891 203 DGTFADGHVHWLVTNNPEDYIENLIIAFNLKSEEFHEV-PLPHLENRN-------DVLVMFVGNFSGCLYFSCLCNY-PQ 273 (381)
Q Consensus 203 ~~v~~nG~lYwl~~~~~~~~~~~~i~~fD~~~e~~~~i-~~P~~~~~~-------~~~~~~L~~~~G~L~~~~~~~~-~~ 273 (381)
..|+.||.+|...... ..|+.||+.+++.... .+|...-.+ ....+.|++-+..|-++....+ .+
T Consensus 78 G~VVYngslYY~~~~s------~~iiKydL~t~~v~~~~~Lp~a~y~~~~~Y~~~~~sdiDlAvDE~GLWvIYat~~~~g 151 (255)
T smart00284 78 GVVVYNGSLYFNKFNS------HDICRFDLTTETYQKEPLLNGAGYNNRFPYAWGGFSDIDLAVDENGLWVIYATEQNAG 151 (255)
T ss_pred cEEEECceEEEEecCC------ccEEEEECCCCcEEEEEecCccccccccccccCCCccEEEEEcCCceEEEEeccCCCC
Confidence 6689999999976544 2799999999988644 566422110 1235788888888888876643 24
Q ss_pred eEEEEEEC-------CceeEEEEec-CCCCCeeEEEEEEeCCCEEEEEecccCCccccCCcEEEEEeCCCCceeeeeEEE
Q 016891 274 PVDIWVLM-------GCWTKTFSFP-RSVGDYVKALAYSKSGGKVLVDKFEYGEDEDINRWELFWYDLQNQGAAADQVTI 345 (381)
Q Consensus 274 ~~~iW~l~-------~~W~~~~~i~-~~~~~~~~~~~~~~~g~~i~l~~~~~~~~~~~~~~~l~~yd~~t~~~~~~~v~~ 345 (381)
.|.|-+|+ ..|.- .++ ...+ -++.-.|. |+.... .........+.||+.|++- +.+.|
T Consensus 152 ~ivvSkLnp~tL~ve~tW~T--~~~k~sa~-----naFmvCGv-LY~~~s----~~~~~~~I~yayDt~t~~~--~~~~i 217 (255)
T smart00284 152 KIVISKLNPATLTIENTWIT--TYNKRSAS-----NAFMICGI-LYVTRS----LGSKGEKVFYAYDTNTGKE--GHLDI 217 (255)
T ss_pred CEEEEeeCcccceEEEEEEc--CCCccccc-----ccEEEeeE-EEEEcc----CCCCCcEEEEEEECCCCcc--ceeee
Confidence 78888877 45553 112 1122 22222344 555520 0112345588999999998 77755
Q ss_pred e
Q 016891 346 H 346 (381)
Q Consensus 346 ~ 346 (381)
+
T Consensus 218 ~ 218 (255)
T smart00284 218 P 218 (255)
T ss_pred e
Confidence 3
No 44
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=93.28 E-value=5.5 Score=35.16 Aligned_cols=201 Identities=16% Similarity=0.098 Sum_probs=107.8
Q ss_pred cccCcEEEEee-CCCcEEEEccCCcceeeCCCCCCCCCCceEEEEEeEECCCCCEEEEEEEEEeecCccceEEEEEEcCC
Q 016891 106 DSCNGLIAFKN-DENGIALWNPSTEEHLILPKFWGDLKDFMVVDGFGYDAVNDDYKVVRLVQLVIGNVGYTEIAVYSLRT 184 (381)
Q Consensus 106 ~s~~GLl~~~~-~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~d~~~~~ykVv~~~~~~~~~~~~~~~~vyss~t 184 (381)
...+|-|.+.+ ....++.++|.+++...+..+. ..++.++...+.+ +.... ....+++..+
T Consensus 8 d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~~~~~--------~~G~~~~~~~g~l--~v~~~--------~~~~~~d~~~ 69 (246)
T PF08450_consen 8 DPRDGRLYWVDIPGGRIYRVDPDTGEVEVIDLPG--------PNGMAFDRPDGRL--YVADS--------GGIAVVDPDT 69 (246)
T ss_dssp ETTTTEEEEEETTTTEEEEEETTTTEEEEEESSS--------EEEEEEECTTSEE--EEEET--------TCEEEEETTT
T ss_pred ECCCCEEEEEEcCCCEEEEEECCCCeEEEEecCC--------CceEEEEccCCEE--EEEEc--------CceEEEecCC
Confidence 34456665555 5678999999999887654332 2345555333322 22211 3345669999
Q ss_pred CcEEEcccCCCc---ceecCC-CcEEECCeeEEEEeeCCCCCCc--CEEEEEECCCCeeeeecCCCCCCCCCceeEEEEE
Q 016891 185 NSWRRIRVDFPY---YILHGW-DGTFADGHVHWLVTNNPEDYIE--NLIIAFNLKSEEFHEVPLPHLENRNDVLVMFVGN 258 (381)
Q Consensus 185 ~~W~~~~~~~p~---~~~~~~-~~v~~nG~lYwl~~~~~~~~~~--~~i~~fD~~~e~~~~i~~P~~~~~~~~~~~~L~~ 258 (381)
+.++.+. ..+. .....+ -.+--+|.+|+-.......... ..|..+|.. .+.+.+.-.... .+.....
T Consensus 70 g~~~~~~-~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~~~-----pNGi~~s 142 (246)
T PF08450_consen 70 GKVTVLA-DLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGLGF-----PNGIAFS 142 (246)
T ss_dssp TEEEEEE-EEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEESS-----EEEEEEE
T ss_pred CcEEEEe-eccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecCccc-----ccceEEC
Confidence 9998877 3321 111111 2222478988766543221111 469999999 555544111111 2323333
Q ss_pred ECCe-EEEEEecCCCceEEEEEEC-----CceeEEEEecCCCC--CeeEEEEEEeCCCEEEEEecccCCccccCCcEEEE
Q 016891 259 FSGC-LYFSCLCNYPQPVDIWVLM-----GCWTKTFSFPRSVG--DYVKALAYSKSGGKVLVDKFEYGEDEDINRWELFW 330 (381)
Q Consensus 259 ~~G~-L~~~~~~~~~~~~~iW~l~-----~~W~~~~~i~~~~~--~~~~~~~~~~~g~~i~l~~~~~~~~~~~~~~~l~~ 330 (381)
-+|+ |+++..... + ||.++ ..+.....+-...+ ....-+++..+|. |++.. ....+|..
T Consensus 143 ~dg~~lyv~ds~~~--~--i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~-l~va~--------~~~~~I~~ 209 (246)
T PF08450_consen 143 PDGKTLYVADSFNG--R--IWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGN-LWVAD--------WGGGRIVV 209 (246)
T ss_dssp TTSSEEEEEETTTT--E--EEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS--EEEEE--------ETTTEEEE
T ss_pred Ccchheeecccccc--e--eEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCC-EEEEE--------cCCCEEEE
Confidence 4564 555555433 3 66655 22443333321111 1344566666787 88874 45678999
Q ss_pred EeCCCCceeeeeEEEe
Q 016891 331 YDLQNQGAAADQVTIH 346 (381)
Q Consensus 331 yd~~t~~~~~~~v~~~ 346 (381)
||++.+.. +.|.++
T Consensus 210 ~~p~G~~~--~~i~~p 223 (246)
T PF08450_consen 210 FDPDGKLL--REIELP 223 (246)
T ss_dssp EETTSCEE--EEEE-S
T ss_pred ECCCccEE--EEEcCC
Confidence 99998878 888776
No 45
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=92.84 E-value=2.8 Score=40.56 Aligned_cols=161 Identities=14% Similarity=0.193 Sum_probs=84.1
Q ss_pred CcEEEEccCCcceeeCCCCCCCCCCceEEEEEeEECCCCCEEEEEEEEEeecCccceEEEEEEcCCC--cEEEcccCCCc
Q 016891 119 NGIALWNPSTEEHLILPKFWGDLKDFMVVDGFGYDAVNDDYKVVRLVQLVIGNVGYTEIAVYSLRTN--SWRRIRVDFPY 196 (381)
Q Consensus 119 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~d~~~~~ykVv~~~~~~~~~~~~~~~~vyss~t~--~W~~~~~~~p~ 196 (381)
.++.|+|.+|.||.. |....+.+.....++|.+| +-|++++... .+.+.+.-+.|.+... .|+.+....|.
T Consensus 57 DELHvYNTatnqWf~-PavrGDiPpgcAA~Gfvcd----GtrilvFGGM--vEYGkYsNdLYELQasRWeWkrlkp~~p~ 129 (830)
T KOG4152|consen 57 DELHVYNTATNQWFA-PAVRGDIPPGCAAFGFVCD----GTRILVFGGM--VEYGKYSNDLYELQASRWEWKRLKPKTPK 129 (830)
T ss_pred hhhhhhccccceeec-chhcCCCCCchhhcceEec----CceEEEEccE--eeeccccchHHHhhhhhhhHhhcCCCCCC
Confidence 578999999999974 5444444333344455544 3366666431 1233355667777765 56666522222
Q ss_pred ce--ecCC---CcEEECCeeEEEEeeCCCC----------CCcCEEEEEECCCC--eeeee----cCCCCCCCCCceeEE
Q 016891 197 YI--LHGW---DGTFADGHVHWLVTNNPED----------YIENLIIAFNLKSE--EFHEV----PLPHLENRNDVLVMF 255 (381)
Q Consensus 197 ~~--~~~~---~~v~~nG~lYwl~~~~~~~----------~~~~~i~~fD~~~e--~~~~i----~~P~~~~~~~~~~~~ 255 (381)
.. .+.+ +-+.+++++|..++-.+++ -+.++++-+-.... .|... .+|+..+.+ ....
T Consensus 130 nG~pPCPRlGHSFsl~gnKcYlFGGLaNdseDpknNvPrYLnDlY~leL~~Gsgvv~W~ip~t~Gv~P~pRESH--TAVi 207 (830)
T KOG4152|consen 130 NGPPPCPRLGHSFSLVGNKCYLFGGLANDSEDPKNNVPRYLNDLYILELRPGSGVVAWDIPITYGVLPPPRESH--TAVI 207 (830)
T ss_pred CCCCCCCccCceeEEeccEeEEeccccccccCcccccchhhcceEEEEeccCCceEEEecccccCCCCCCcccc--eeEE
Confidence 11 1122 4455678999887643322 12345665555543 45432 344433322 1111
Q ss_pred EEEEC---CeEEEEEecCCCceEEEEEEC---CceeEEE
Q 016891 256 VGNFS---GCLYFSCLCNYPQPVDIWVLM---GCWTKTF 288 (381)
Q Consensus 256 L~~~~---G~L~~~~~~~~~~~~~iW~l~---~~W~~~~ 288 (381)
-++-+ -++++...-.+..-=++|.|+ -.|.+..
T Consensus 208 Y~eKDs~~skmvvyGGM~G~RLgDLW~Ldl~Tl~W~kp~ 246 (830)
T KOG4152|consen 208 YTEKDSKKSKMVVYGGMSGCRLGDLWTLDLDTLTWNKPS 246 (830)
T ss_pred EEeccCCcceEEEEcccccccccceeEEecceeeccccc
Confidence 22322 245555544444234899999 6898743
No 46
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=92.42 E-value=9.4 Score=35.80 Aligned_cols=153 Identities=16% Similarity=0.182 Sum_probs=84.0
Q ss_pred EEcccCcEEEEeeCCCcEEEEccCCcceeeCCCCCCCCCCceEEEEEeEECCCCCEEEEEEEEEeecCcc------ceEE
Q 016891 104 IIDSCNGLIAFKNDENGIALWNPSTEEHLILPKFWGDLKDFMVVDGFGYDAVNDDYKVVRLVQLVIGNVG------YTEI 177 (381)
Q Consensus 104 ~~~s~~GLl~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~d~~~~~ykVv~~~~~~~~~~~------~~~~ 177 (381)
..+-.+.-++..+.....+|+++.|.....+|.+...... ...+.+ ++ ++.++......... ..++
T Consensus 71 F~al~gskIv~~d~~~~t~vyDt~t~av~~~P~l~~pk~~-pisv~V------G~-~LY~m~~~~~~~~~~~~~~~~FE~ 142 (342)
T PF07893_consen 71 FFALHGSKIVAVDQSGRTLVYDTDTRAVATGPRLHSPKRC-PISVSV------GD-KLYAMDRSPFPEPAGRPDFPCFEA 142 (342)
T ss_pred EEEecCCeEEEEcCCCCeEEEECCCCeEeccCCCCCCCcc-eEEEEe------CC-eEEEeeccCccccccCccceeEEE
Confidence 3333344444444446699999999999999986543221 111222 11 35555432111100 2344
Q ss_pred EEEE--------cCCCcEEEcccCCCcceecC------C-CcEEECCeeEEEEeeCCCCCCcCEEEEEECCCCeeeee--
Q 016891 178 AVYS--------LRTNSWRRIRVDFPYYILHG------W-DGTFADGHVHWLVTNNPEDYIENLIIAFNLKSEEFHEV-- 240 (381)
Q Consensus 178 ~vys--------s~t~~W~~~~~~~p~~~~~~------~-~~v~~nG~lYwl~~~~~~~~~~~~i~~fD~~~e~~~~i-- 240 (381)
.+|. .++.+|+.++ .+|+..... . .+|+ +|.--|++..+.. ...-+||..+.+|+..
T Consensus 143 l~~~~~~~~~~~~~~w~W~~LP-~PPf~~~~~~~~~~i~sYavv-~g~~I~vS~~~~~----~GTysfDt~~~~W~~~Gd 216 (342)
T PF07893_consen 143 LVYRPPPDDPSPEESWSWRSLP-PPPFVRDRRYSDYRITSYAVV-DGRTIFVSVNGRR----WGTYSFDTESHEWRKHGD 216 (342)
T ss_pred eccccccccccCCCcceEEcCC-CCCccccCCcccceEEEEEEe-cCCeEEEEecCCc----eEEEEEEcCCcceeeccc
Confidence 4444 2234889888 667543321 1 3444 7877777655421 1478999999999998
Q ss_pred -cCCCCCCCC--CceeEEEEEE--C--CeEEEEEecC
Q 016891 241 -PLPHLENRN--DVLVMFVGNF--S--GCLYFSCLCN 270 (381)
Q Consensus 241 -~~P~~~~~~--~~~~~~L~~~--~--G~L~~~~~~~ 270 (381)
.+|...... .....+++-+ + |.||.+....
T Consensus 217 W~LPF~G~a~y~~el~~W~Gls~~~~~~~lca~dv~~ 253 (342)
T PF07893_consen 217 WMLPFHGQAEYVPELDLWFGLSSDGGGGHLCACDVSS 253 (342)
T ss_pred eecCcCCccEECCCcCeEEEeccCCCCcEEEEEeccc
Confidence 788754332 1234455543 3 3677666554
No 47
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.21 E-value=1.7 Score=40.05 Aligned_cols=188 Identities=14% Similarity=0.169 Sum_probs=105.8
Q ss_pred eEEEEEEcCCCcEEEcccCCCcceecCCCcEEECC-eeEEEEeeCCC--------------C------------------
Q 016891 175 TEIAVYSLRTNSWRRIRVDFPYYILHGWDGTFADG-HVHWLVTNNPE--------------D------------------ 221 (381)
Q Consensus 175 ~~~~vyss~t~~W~~~~~~~p~~~~~~~~~v~~nG-~lYwl~~~~~~--------------~------------------ 221 (381)
..++.|++.+++|..+++.-|...... .++.+++ .+|+.++.... +
T Consensus 113 nd~Y~y~p~~nsW~kl~t~sP~gl~G~-~~~~~~~~~i~f~GGvn~~if~~yf~dv~~a~~d~~~~~~i~~~yf~~~~~d 191 (381)
T COG3055 113 NDAYRYDPSTNSWHKLDTRSPTGLVGA-STFSLNGTKIYFFGGVNQNIFNGYFEDVGAAGKDKEAVDKIIAHYFDKKAED 191 (381)
T ss_pred eeeEEecCCCChhheeccccccccccc-eeEecCCceEEEEccccHHhhhhhHHhhhhhcccHHHHHHHHHHHhCCCHHH
Confidence 679999999999999996667653222 4555666 88888753210 0
Q ss_pred -CCcCEEEEEECCCCeeeee-cCCCCCCCCCceeEEEEEECCeEEEEEecCC--CceEEEEEEC-----CceeEEEEecC
Q 016891 222 -YIENLIIAFNLKSEEFHEV-PLPHLENRNDVLVMFVGNFSGCLYFSCLCNY--PQPVDIWVLM-----GCWTKTFSFPR 292 (381)
Q Consensus 222 -~~~~~i~~fD~~~e~~~~i-~~P~~~~~~~~~~~~L~~~~G~L~~~~~~~~--~~~~~iW~l~-----~~W~~~~~i~~ 292 (381)
-.-..+++||+.++.|+.. ..|..... ....+.-+++|.++...-. -+.-.+|+.+ ..|.+...++.
T Consensus 192 y~~n~ev~sy~p~~n~W~~~G~~pf~~~a----Gsa~~~~~n~~~lInGEiKpGLRt~~~k~~~~~~~~~~w~~l~~lp~ 267 (381)
T COG3055 192 YFFNKEVLSYDPSTNQWRNLGENPFYGNA----GSAVVIKGNKLTLINGEIKPGLRTAEVKQADFGGDNLKWLKLSDLPA 267 (381)
T ss_pred hcccccccccccccchhhhcCcCcccCcc----CcceeecCCeEEEEcceecCCccccceeEEEeccCceeeeeccCCCC
Confidence 0122699999999999988 57765422 1123333567888876531 1133444444 78998877762
Q ss_pred CCC-CeeEEEEEEe---CCCEEEEE-ec---------c----cC--CccccCCcEEEEEeCCCCceeeeeE-EEecCCCC
Q 016891 293 SVG-DYVKALAYSK---SGGKVLVD-KF---------E----YG--EDEDINRWELFWYDLQNQGAAADQV-TIHGVPQG 351 (381)
Q Consensus 293 ~~~-~~~~~~~~~~---~g~~i~l~-~~---------~----~~--~~~~~~~~~l~~yd~~t~~~~~~~v-~~~~~~~~ 351 (381)
..+ ...-+.+... +++ +++. ++ + +. +-++...++|+.+| .+.| +.+ +++...-+
T Consensus 268 ~~~~~~eGvAGaf~G~s~~~-~lv~GGAnF~Ga~~~y~~Gk~~AH~Gl~K~w~~~Vy~~d--~g~W--k~~GeLp~~l~Y 342 (381)
T COG3055 268 PIGSNKEGVAGAFSGKSNGE-VLVAGGANFPGALKAYKNGKFYAHEGLSKSWNSEVYIFD--NGSW--KIVGELPQGLAY 342 (381)
T ss_pred CCCCCccccceeccceeCCe-EEEecCCCChhHHHHHHhcccccccchhhhhhceEEEEc--CCce--eeecccCCCccc
Confidence 221 1122222111 344 3333 11 0 00 01112345677777 9999 877 33332222
Q ss_pred ceeEEEEeeceecCcCCCCCCc
Q 016891 352 CRDTIVCVDSLVSLAACAGRGV 373 (381)
Q Consensus 352 ~~~~~~y~~sl~~~~~~~~~~~ 373 (381)
=-...|.+.++.|.+-...|.
T Consensus 343 -G~s~~~nn~vl~IGGE~~~Gk 363 (381)
T COG3055 343 -GVSLSYNNKVLLIGGETSGGK 363 (381)
T ss_pred -eEEEecCCcEEEEccccCCCe
Confidence 335677788777766554443
No 48
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=92.01 E-value=0.25 Score=31.54 Aligned_cols=38 Identities=8% Similarity=0.135 Sum_probs=23.4
Q ss_pred CcEEE-CCeeEEEEeeCCCCCCcCEEEEEECCCCeeeee
Q 016891 203 DGTFA-DGHVHWLVTNNPEDYIENLIIAFNLKSEEFHEV 240 (381)
Q Consensus 203 ~~v~~-nG~lYwl~~~~~~~~~~~~i~~fD~~~e~~~~i 240 (381)
..+.+ ++.+|..++..........+..||+.+++|+.+
T Consensus 6 ~~~~~~~~~i~v~GG~~~~~~~~~d~~~~d~~~~~W~~~ 44 (49)
T PF13418_consen 6 SAVSIGDNSIYVFGGRDSSGSPLNDLWIFDIETNTWTRL 44 (49)
T ss_dssp EEEEE-TTEEEEE--EEE-TEE---EEEEETTTTEEEE-
T ss_pred EEEEEeCCeEEEECCCCCCCcccCCEEEEECCCCEEEEC
Confidence 44556 589999887654322233588999999999988
No 49
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=91.93 E-value=6.2 Score=37.08 Aligned_cols=117 Identities=11% Similarity=0.111 Sum_probs=72.5
Q ss_pred ECCeeEEEEeeCCCCCCcCEEEEEECCCC------eeeeecCC---CCCCCCCceeEEEEEE--CCeEEEEEecCC----
Q 016891 207 ADGHVHWLVTNNPEDYIENLIIAFNLKSE------EFHEVPLP---HLENRNDVLVMFVGNF--SGCLYFSCLCNY---- 271 (381)
Q Consensus 207 ~nG~lYwl~~~~~~~~~~~~i~~fD~~~e------~~~~i~~P---~~~~~~~~~~~~L~~~--~G~L~~~~~~~~---- 271 (381)
.+|..+|.+..+ .|..+|+++. .|..+..- ....- ...++ ++.. +++|+++.....
T Consensus 204 ~dg~~~~vs~eG-------~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP-~g~q~-ia~~~dg~~lyV~~~~~~~~th 274 (352)
T TIGR02658 204 KSGRLVWPTYTG-------KIFQIDLSSGDAKFLPAIEAFTEAEKADGWRP-GGWQQ-VAYHRARDRIYLLADQRAKWTH 274 (352)
T ss_pred CCCcEEEEecCC-------eEEEEecCCCcceecceeeeccccccccccCC-Cccee-EEEcCCCCEEEEEecCCccccc
Confidence 379999999885 7899996543 34433111 01100 11233 2222 457777543221
Q ss_pred -CceEEEEEEC-CceeEEEEecCCCCCeeEEEEEEeCCC-EEEEEecccCCccccCCcEEEEEeCCCCceeeeeE
Q 016891 272 -PQPVDIWVLM-GCWTKTFSFPRSVGDYVKALAYSKSGG-KVLVDKFEYGEDEDINRWELFWYDLQNQGAAADQV 343 (381)
Q Consensus 272 -~~~~~iW~l~-~~W~~~~~i~~~~~~~~~~~~~~~~g~-~i~l~~~~~~~~~~~~~~~l~~yd~~t~~~~~~~v 343 (381)
...-+||+++ ..+..+.+|+ .+.....+++.++|+ +++..+ .....+.++|..+.+. .+.|
T Consensus 275 k~~~~~V~ViD~~t~kvi~~i~--vG~~~~~iavS~Dgkp~lyvtn--------~~s~~VsViD~~t~k~-i~~i 338 (352)
T TIGR02658 275 KTASRFLFVVDAKTGKRLRKIE--LGHEIDSINVSQDAKPLLYALS--------TGDKTLYIFDAETGKE-LSSV 338 (352)
T ss_pred cCCCCEEEEEECCCCeEEEEEe--CCCceeeEEECCCCCeEEEEeC--------CCCCcEEEEECcCCeE-Eeee
Confidence 1123799999 9999999988 445567788888998 666662 2345699999999966 1555
No 50
>PF13964 Kelch_6: Kelch motif
Probab=91.56 E-value=0.35 Score=30.99 Aligned_cols=22 Identities=23% Similarity=0.356 Sum_probs=19.4
Q ss_pred CCcEEEEccCCcceeeCCCCCC
Q 016891 118 ENGIALWNPSTEEHLILPKFWG 139 (381)
Q Consensus 118 ~~~~~V~NP~T~~~~~LP~~~~ 139 (381)
.+.+.++||.|++|..+|+.+.
T Consensus 27 ~~~v~~yd~~t~~W~~~~~mp~ 48 (50)
T PF13964_consen 27 SNDVERYDPETNTWEQLPPMPT 48 (50)
T ss_pred cccEEEEcCCCCcEEECCCCCC
Confidence 4679999999999999998764
No 51
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=91.15 E-value=0.52 Score=29.59 Aligned_cols=35 Identities=23% Similarity=0.385 Sum_probs=23.5
Q ss_pred EEEEEEEEeecCccceEEEEEEcCCCcEEEcccCCC
Q 016891 160 KVVRLVQLVIGNVGYTEIAVYSLRTNSWRRIRVDFP 195 (381)
Q Consensus 160 kVv~~~~~~~~~~~~~~~~vyss~t~~W~~~~~~~p 195 (381)
+|..+............+++|+.++++|+.++ .+|
T Consensus 13 ~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~-~mp 47 (47)
T PF01344_consen 13 KIYVIGGYDGNNQPTNSVEVYDPETNTWEELP-PMP 47 (47)
T ss_dssp EEEEEEEBESTSSBEEEEEEEETTTTEEEEEE-EES
T ss_pred EEEEEeeecccCceeeeEEEEeCCCCEEEEcC-CCC
Confidence 55555543221222389999999999999988 543
No 52
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=90.40 E-value=11 Score=32.77 Aligned_cols=125 Identities=11% Similarity=0.145 Sum_probs=67.2
Q ss_pred EECCeeEEEEeeCCCCCCcCEEEEEECCCCeeeeecCCCCCCCCCce-eEEEEEE--CC--eEEEEEec---CCCceEEE
Q 016891 206 FADGHVHWLVTNNPEDYIENLIIAFNLKSEEFHEVPLPHLENRNDVL-VMFVGNF--SG--CLYFSCLC---NYPQPVDI 277 (381)
Q Consensus 206 ~~nG~lYwl~~~~~~~~~~~~i~~fD~~~e~~~~i~~P~~~~~~~~~-~~~L~~~--~G--~L~~~~~~---~~~~~~~i 277 (381)
.+||-+.... .. .+.+.|+.|+++..+|.|......... ...++-. .+ ++..+... .....++|
T Consensus 3 sCnGLlc~~~-~~-------~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~G~d~~~~~YKVv~~~~~~~~~~~~~~~V 74 (230)
T TIGR01640 3 PCDGLICFSY-GK-------RLVVWNPSTGQSRWLPTPKSRRSNKESDTYFLGYDPIEKQYKVLCFSDRSGNRNQSEHQV 74 (230)
T ss_pred ccceEEEEec-CC-------cEEEECCCCCCEEecCCCCCcccccccceEEEeecccCCcEEEEEEEeecCCCCCccEEE
Confidence 4688774322 22 699999999999998766432110011 1222221 12 23222221 11236788
Q ss_pred EEEC-CceeEEEEecCCCCCeeEEEEEEeCCCEEEEEecccCCccccCCc-EEEEEeCCCCceeeee-EEEec
Q 016891 278 WVLM-GCWTKTFSFPRSVGDYVKALAYSKSGGKVLVDKFEYGEDEDINRW-ELFWYDLQNQGAAADQ-VTIHG 347 (381)
Q Consensus 278 W~l~-~~W~~~~~i~~~~~~~~~~~~~~~~g~~i~l~~~~~~~~~~~~~~-~l~~yd~~t~~~~~~~-v~~~~ 347 (381)
+.+. ++|..+...+... ..... ++.-+|. |+.....- ..... .|+.||+++.++ +. +..+.
T Consensus 75 ys~~~~~Wr~~~~~~~~~-~~~~~-~v~~~G~-lyw~~~~~----~~~~~~~IvsFDl~~E~f--~~~i~~P~ 138 (230)
T TIGR01640 75 YTLGSNSWRTIECSPPHH-PLKSR-GVCINGV-LYYLAYTL----KTNPDYFIVSFDVSSERF--KEFIPLPC 138 (230)
T ss_pred EEeCCCCccccccCCCCc-cccCC-eEEECCE-EEEEEEEC----CCCCcEEEEEEEcccceE--eeeeecCc
Confidence 8888 9999876322211 11112 5555676 65552100 00122 699999999999 84 65543
No 53
>smart00612 Kelch Kelch domain.
Probab=88.99 E-value=0.66 Score=28.75 Aligned_cols=21 Identities=29% Similarity=0.673 Sum_probs=18.0
Q ss_pred eEEEEEEcCCCcEEEcccCCCc
Q 016891 175 TEIAVYSLRTNSWRRIRVDFPY 196 (381)
Q Consensus 175 ~~~~vyss~t~~W~~~~~~~p~ 196 (381)
..+++|++++++|+.++ .++.
T Consensus 15 ~~v~~yd~~~~~W~~~~-~~~~ 35 (47)
T smart00612 15 KSVEVYDPETNKWTPLP-SMPT 35 (47)
T ss_pred eeEEEECCCCCeEccCC-CCCC
Confidence 67999999999999988 6554
No 54
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=87.50 E-value=15 Score=34.49 Aligned_cols=87 Identities=13% Similarity=0.154 Sum_probs=48.9
Q ss_pred EEEEEEcCCCcEEEcccCCCcceecCCCcEEECCeeEEEEeeCCCCCCcCEEEEEECCCCee-----------eeecCCC
Q 016891 176 EIAVYSLRTNSWRRIRVDFPYYILHGWDGTFADGHVHWLVTNNPEDYIENLIIAFNLKSEEF-----------HEVPLPH 244 (381)
Q Consensus 176 ~~~vyss~t~~W~~~~~~~p~~~~~~~~~v~~nG~lYwl~~~~~~~~~~~~i~~fD~~~e~~-----------~~i~~P~ 244 (381)
.+..|+.++++|+.+. +... .....+.|+..-=-|++-...... ..|.+.|+.+..- ..+..|.
T Consensus 200 GTysfDt~~~~W~~~G-dW~L--PF~G~a~y~~el~~W~Gls~~~~~--~~lca~dv~~~~~~~~pp~~~~~~~~l~~~~ 274 (342)
T PF07893_consen 200 GTYSFDTESHEWRKHG-DWML--PFHGQAEYVPELDLWFGLSSDGGG--GHLCACDVSSADSASPPPEWKLTWEELFPPE 274 (342)
T ss_pred EEEEEEcCCcceeecc-ceec--CcCCccEECCCcCeEEEeccCCCC--cEEEEEeccccccCCCCCcceeccccccccc
Confidence 5788888889999998 4322 222255665554467665443211 3789999876322 2222221
Q ss_pred CCCCCCceeEEEEEE-CCeEEEEEecC
Q 016891 245 LENRNDVLVMFVGNF-SGCLYFSCLCN 270 (381)
Q Consensus 245 ~~~~~~~~~~~L~~~-~G~L~~~~~~~ 270 (381)
. .. .....|+.+ +|++|++....
T Consensus 275 ~-~~--~~~~~Lv~lG~grFCi~~~~~ 298 (342)
T PF07893_consen 275 E-WR--HVGATLVYLGSGRFCIVEFFS 298 (342)
T ss_pred c-cc--ccCceEEECCCCCEEEEEEec
Confidence 1 11 124566666 46777777543
No 55
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=87.01 E-value=29 Score=33.23 Aligned_cols=153 Identities=13% Similarity=0.087 Sum_probs=82.0
Q ss_pred eEEEEEEcCCC-----cEEEcccCCCcceecCCCcEEECCeeEEEEeeCCCCCCcCEEEEEECCCCe---eeeecCCCCC
Q 016891 175 TEIAVYSLRTN-----SWRRIRVDFPYYILHGWDGTFADGHVHWLVTNNPEDYIENLIIAFNLKSEE---FHEVPLPHLE 246 (381)
Q Consensus 175 ~~~~vyss~t~-----~W~~~~~~~p~~~~~~~~~v~~nG~lYwl~~~~~~~~~~~~i~~fD~~~e~---~~~i~~P~~~ 246 (381)
..+.+.+..++ .|+.+....+... . ..-+.++.+|+++..+. ....|++.|+.+-. |..+-.|...
T Consensus 252 s~v~~~d~~~~~~~~~~~~~l~~~~~~~~-~--~v~~~~~~~yi~Tn~~a---~~~~l~~~~l~~~~~~~~~~~l~~~~~ 325 (414)
T PF02897_consen 252 SEVYLLDLDDGGSPDAKPKLLSPREDGVE-Y--YVDHHGDRLYILTNDDA---PNGRLVAVDLADPSPAEWWTVLIPEDE 325 (414)
T ss_dssp EEEEEEECCCTTTSS-SEEEEEESSSS-E-E--EEEEETTEEEEEE-TT----TT-EEEEEETTSTSGGGEEEEEE--SS
T ss_pred CeEEEEeccccCCCcCCcEEEeCCCCceE-E--EEEccCCEEEEeeCCCC---CCcEEEEecccccccccceeEEcCCCC
Confidence 56777777664 7887762222111 1 22345888998887442 23589999998754 5533233222
Q ss_pred CCCCceeEEEEEECCeEEEEEecCCCceEEEEEECCceeEEEEecCCCCCeeEEEEEEeCCCEEEEEecccCCccccCCc
Q 016891 247 NRNDVLVMFVGNFSGCLYFSCLCNYPQPVDIWVLMGCWTKTFSFPRSVGDYVKALAYSKSGGKVLVDKFEYGEDEDINRW 326 (381)
Q Consensus 247 ~~~~~~~~~L~~~~G~L~~~~~~~~~~~~~iW~l~~~W~~~~~i~~~~~~~~~~~~~~~~g~~i~l~~~~~~~~~~~~~~ 326 (381)
. ..--.+...++.|.+....+...++.|+.++..|.......+..+. ...+....+++.+++.-..+ ....
T Consensus 326 ~---~~l~~~~~~~~~Lvl~~~~~~~~~l~v~~~~~~~~~~~~~~p~~g~-v~~~~~~~~~~~~~~~~ss~-----~~P~ 396 (414)
T PF02897_consen 326 D---VSLEDVSLFKDYLVLSYRENGSSRLRVYDLDDGKESREIPLPEAGS-VSGVSGDFDSDELRFSYSSF-----TTPP 396 (414)
T ss_dssp S---EEEEEEEEETTEEEEEEEETTEEEEEEEETT-TEEEEEEESSSSSE-EEEEES-TT-SEEEEEEEET-----TEEE
T ss_pred c---eeEEEEEEECCEEEEEEEECCccEEEEEECCCCcEEeeecCCcceE-EeccCCCCCCCEEEEEEeCC-----CCCC
Confidence 1 0123444567888888887764355554444255543332222321 12222223566577662111 3356
Q ss_pred EEEEEeCCCCceeeeeEE
Q 016891 327 ELFWYDLQNQGAAADQVT 344 (381)
Q Consensus 327 ~l~~yd~~t~~~~~~~v~ 344 (381)
.++.||+++++. +.++
T Consensus 397 ~~y~~d~~t~~~--~~~k 412 (414)
T PF02897_consen 397 TVYRYDLATGEL--TLLK 412 (414)
T ss_dssp EEEEEETTTTCE--EEEE
T ss_pred EEEEEECCCCCE--EEEE
Confidence 799999999999 7764
No 56
>smart00612 Kelch Kelch domain.
Probab=86.70 E-value=2.1 Score=26.38 Aligned_cols=33 Identities=3% Similarity=0.108 Sum_probs=21.4
Q ss_pred eEEEEeeCCCCCCcCEEEEEECCCCeeeee-cCCC
Q 016891 211 VHWLVTNNPEDYIENLIIAFNLKSEEFHEV-PLPH 244 (381)
Q Consensus 211 lYwl~~~~~~~~~~~~i~~fD~~~e~~~~i-~~P~ 244 (381)
||.+++... ......+..||+.+.+|+.+ ++|.
T Consensus 2 iyv~GG~~~-~~~~~~v~~yd~~~~~W~~~~~~~~ 35 (47)
T smart00612 2 IYVVGGFDG-GQRLKSVEVYDPETNKWTPLPSMPT 35 (47)
T ss_pred EEEEeCCCC-CceeeeEEEECCCCCeEccCCCCCC
Confidence 566665432 11234689999999999877 4443
No 57
>PLN02772 guanylate kinase
Probab=86.61 E-value=4.2 Score=38.62 Aligned_cols=74 Identities=9% Similarity=-0.019 Sum_probs=51.8
Q ss_pred CcEEECCeeEEEEeeCCCCCCcCEEEEEECCCCeeeee----cCCCCCCCCCceeEEEEEECCeEEEEEecCCCceEEEE
Q 016891 203 DGTFADGHVHWLVTNNPEDYIENLIIAFNLKSEEFHEV----PLPHLENRNDVLVMFVGNFSGCLYFSCLCNYPQPVDIW 278 (381)
Q Consensus 203 ~~v~~nG~lYwl~~~~~~~~~~~~i~~fD~~~e~~~~i----~~P~~~~~~~~~~~~L~~~~G~L~~~~~~~~~~~~~iW 278 (381)
+.|.+++++|..++..+.......+-+||..+.+|..- ..|.... .+-.+..-+++|.++...... .=+||
T Consensus 29 tav~igdk~yv~GG~~d~~~~~~~v~i~D~~t~~W~~P~V~G~~P~~r~----GhSa~v~~~~rilv~~~~~~~-~~~~w 103 (398)
T PLN02772 29 TSVTIGDKTYVIGGNHEGNTLSIGVQILDKITNNWVSPIVLGTGPKPCK----GYSAVVLNKDRILVIKKGSAP-DDSIW 103 (398)
T ss_pred eeEEECCEEEEEcccCCCccccceEEEEECCCCcEecccccCCCCCCCC----cceEEEECCceEEEEeCCCCC-ccceE
Confidence 78899999999997554322334789999999999765 2333332 132333447899998877655 56899
Q ss_pred EEC
Q 016891 279 VLM 281 (381)
Q Consensus 279 ~l~ 281 (381)
.|+
T Consensus 104 ~l~ 106 (398)
T PLN02772 104 FLE 106 (398)
T ss_pred EEE
Confidence 999
No 58
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=86.51 E-value=1.6 Score=27.64 Aligned_cols=35 Identities=14% Similarity=0.396 Sum_probs=17.8
Q ss_pred EEEEEEEEeecCccceEEEEEEcCCCcEEEcccCCC
Q 016891 160 KVVRLVQLVIGNVGYTEIAVYSLRTNSWRRIRVDFP 195 (381)
Q Consensus 160 kVv~~~~~~~~~~~~~~~~vyss~t~~W~~~~~~~p 195 (381)
+++.+............+++|+.++++|+.++ .+|
T Consensus 14 ~i~v~GG~~~~~~~~~d~~~~d~~~~~W~~~~-~~P 48 (49)
T PF13418_consen 14 SIYVFGGRDSSGSPLNDLWIFDIETNTWTRLP-SMP 48 (49)
T ss_dssp EEEEE--EEE-TEE---EEEEETTTTEEEE---SS-
T ss_pred eEEEECCCCCCCcccCCEEEEECCCCEEEECC-CCC
Confidence 44445432222222378999999999999997 555
No 59
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=86.24 E-value=23 Score=31.17 Aligned_cols=115 Identities=17% Similarity=0.163 Sum_probs=69.0
Q ss_pred CCeeEEEEeeCCCCCCcCEEEEEECCCCeeeeecCCCCCCCCCceeEEEEE-ECCeEEEEEecCCCceEEEEEEC-Ccee
Q 016891 208 DGHVHWLVTNNPEDYIENLIIAFNLKSEEFHEVPLPHLENRNDVLVMFVGN-FSGCLYFSCLCNYPQPVDIWVLM-GCWT 285 (381)
Q Consensus 208 nG~lYwl~~~~~~~~~~~~i~~fD~~~e~~~~i~~P~~~~~~~~~~~~L~~-~~G~L~~~~~~~~~~~~~iW~l~-~~W~ 285 (381)
+|.|||...... .|..+|+.+.+.+.+..|. . ...... -+|+|+++... .+.+...+ .+++
T Consensus 11 ~g~l~~~D~~~~------~i~~~~~~~~~~~~~~~~~-~------~G~~~~~~~g~l~v~~~~----~~~~~d~~~g~~~ 73 (246)
T PF08450_consen 11 DGRLYWVDIPGG------RIYRVDPDTGEVEVIDLPG-P------NGMAFDRPDGRLYVADSG----GIAVVDPDTGKVT 73 (246)
T ss_dssp TTEEEEEETTTT------EEEEEETTTTEEEEEESSS-E------EEEEEECTTSEEEEEETT----CEEEEETTTTEEE
T ss_pred CCEEEEEEcCCC------EEEEEECCCCeEEEEecCC-C------ceEEEEccCCEEEEEEcC----ceEEEecCCCcEE
Confidence 699999986553 8999999999998887765 1 122333 36788777643 23444445 7788
Q ss_pred EEEEecCC--CCCeeEEEEEEeCCCEEEEEecccCCccccCCcEEEEEeCCCCceeeeeE
Q 016891 286 KTFSFPRS--VGDYVKALAYSKSGGKVLVDKFEYGEDEDINRWELFWYDLQNQGAAADQV 343 (381)
Q Consensus 286 ~~~~i~~~--~~~~~~~~~~~~~g~~i~l~~~~~~~~~~~~~~~l~~yd~~t~~~~~~~v 343 (381)
........ ......-+++.++|. |++......-.......+++.++++ ++. +.+
T Consensus 74 ~~~~~~~~~~~~~~~ND~~vd~~G~-ly~t~~~~~~~~~~~~g~v~~~~~~-~~~--~~~ 129 (246)
T PF08450_consen 74 VLADLPDGGVPFNRPNDVAVDPDGN-LYVTDSGGGGASGIDPGSVYRIDPD-GKV--TVV 129 (246)
T ss_dssp EEEEEETTCSCTEEEEEEEE-TTS--EEEEEECCBCTTCGGSEEEEEEETT-SEE--EEE
T ss_pred EEeeccCCCcccCCCceEEEcCCCC-EEEEecCCCccccccccceEEECCC-CeE--EEE
Confidence 77777411 223344467777887 8887422110000111468999999 666 555
No 60
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=86.15 E-value=7.2 Score=36.14 Aligned_cols=119 Identities=14% Similarity=0.148 Sum_probs=65.3
Q ss_pred CcEEEC--CeeEEEEeeCCCCCCcCEEEEEECCCCeeeee---cCCCCCCCCCcee---EEEEEE---CCeEEEEEecCC
Q 016891 203 DGTFAD--GHVHWLVTNNPEDYIENLIIAFNLKSEEFHEV---PLPHLENRNDVLV---MFVGNF---SGCLYFSCLCNY 271 (381)
Q Consensus 203 ~~v~~n--G~lYwl~~~~~~~~~~~~i~~fD~~~e~~~~i---~~P~~~~~~~~~~---~~L~~~---~G~L~~~~~~~~ 271 (381)
.+++.+ |.+||++..+ .|-..|++.+.-... ++-...+....+. .++..+ .|+||++-....
T Consensus 188 ~~~~~~~~~~~~F~Sy~G-------~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~ 260 (342)
T PF06433_consen 188 HPAYSRDGGRLYFVSYEG-------NVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGG 260 (342)
T ss_dssp --EEETTTTEEEEEBTTS-------EEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--
T ss_pred ccceECCCCeEEEEecCC-------EEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCC
Confidence 455543 5789988877 788999887654333 1111010001121 123322 579998776532
Q ss_pred -----CceEEEEEEC-CceeEEEEecCCCCCeeEEEEEEeCCCEEEE-EecccCCccccCCcEEEEEeCCCCce
Q 016891 272 -----PQPVDIWVLM-GCWTKTFSFPRSVGDYVKALAYSKSGGKVLV-DKFEYGEDEDINRWELFWYDLQNQGA 338 (381)
Q Consensus 272 -----~~~~~iW~l~-~~W~~~~~i~~~~~~~~~~~~~~~~g~~i~l-~~~~~~~~~~~~~~~l~~yd~~t~~~ 338 (381)
..-=+||+++ ..=.++.+|+. +....-+++..+.+=+++ .. .....+++||..|++.
T Consensus 261 ~gsHKdpgteVWv~D~~t~krv~Ri~l--~~~~~Si~Vsqd~~P~L~~~~--------~~~~~l~v~D~~tGk~ 324 (342)
T PF06433_consen 261 EGSHKDPGTEVWVYDLKTHKRVARIPL--EHPIDSIAVSQDDKPLLYALS--------AGDGTLDVYDAATGKL 324 (342)
T ss_dssp TT-TTS-EEEEEEEETTTTEEEEEEEE--EEEESEEEEESSSS-EEEEEE--------TTTTEEEEEETTT--E
T ss_pred CCCccCCceEEEEEECCCCeEEEEEeC--CCccceEEEccCCCcEEEEEc--------CCCCeEEEEeCcCCcE
Confidence 1145899999 55567777761 112335677777663444 31 3345799999999988
No 61
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=85.98 E-value=30 Score=32.25 Aligned_cols=134 Identities=19% Similarity=0.295 Sum_probs=75.6
Q ss_pred eEEEEEEcCCCcEEEcccCCCcceecCCCcEEECCe-eEEEEeeCCCC--CCcCEEEEEECCCCeeeee-cCCCCCCCCC
Q 016891 175 TEIAVYSLRTNSWRRIRVDFPYYILHGWDGTFADGH-VHWLVTNNPED--YIENLIIAFNLKSEEFHEV-PLPHLENRND 250 (381)
Q Consensus 175 ~~~~vyss~t~~W~~~~~~~p~~~~~~~~~v~~nG~-lYwl~~~~~~~--~~~~~i~~fD~~~e~~~~i-~~P~~~~~~~ 250 (381)
.++.+|++.++.|+... ..|+..... .++...|. +-.+.++-... .......-|.-...+|... ++|.....++
T Consensus 196 ~ev~sy~p~~n~W~~~G-~~pf~~~aG-sa~~~~~n~~~lInGEiKpGLRt~~~k~~~~~~~~~~w~~l~~lp~~~~~~~ 273 (381)
T COG3055 196 KEVLSYDPSTNQWRNLG-ENPFYGNAG-SAVVIKGNKLTLINGEIKPGLRTAEVKQADFGGDNLKWLKLSDLPAPIGSNK 273 (381)
T ss_pred ccccccccccchhhhcC-cCcccCccC-cceeecCCeEEEEcceecCCccccceeEEEeccCceeeeeccCCCCCCCCCc
Confidence 67899999999999998 666543322 33444443 33333221111 1122555666678899888 5665443322
Q ss_pred ce--eEEEEEECCeEEEEEecC--------------------CCceEEEEEEC-CceeEEEEecCCCCCeeEEEEEEeCC
Q 016891 251 VL--VMFVGNFSGCLYFSCLCN--------------------YPQPVDIWVLM-GCWTKTFSFPRSVGDYVKALAYSKSG 307 (381)
Q Consensus 251 ~~--~~~L~~~~G~L~~~~~~~--------------------~~~~~~iW~l~-~~W~~~~~i~~~~~~~~~~~~~~~~g 307 (381)
.. ..+-+..+|.+.+..... ...+-+||.++ .+|..+..++..++ .-+.+.-++
T Consensus 274 eGvAGaf~G~s~~~~lv~GGAnF~Ga~~~y~~Gk~~AH~Gl~K~w~~~Vy~~d~g~Wk~~GeLp~~l~---YG~s~~~nn 350 (381)
T COG3055 274 EGVAGAFSGKSNGEVLVAGGANFPGALKAYKNGKFYAHEGLSKSWNSEVYIFDNGSWKIVGELPQGLA---YGVSLSYNN 350 (381)
T ss_pred cccceeccceeCCeEEEecCCCChhHHHHHHhcccccccchhhhhhceEEEEcCCceeeecccCCCcc---ceEEEecCC
Confidence 11 123334566666655431 12345889999 99999888885332 333334355
Q ss_pred CEEEEEe
Q 016891 308 GKVLVDK 314 (381)
Q Consensus 308 ~~i~l~~ 314 (381)
+ |++.+
T Consensus 351 ~-vl~IG 356 (381)
T COG3055 351 K-VLLIG 356 (381)
T ss_pred c-EEEEc
Confidence 5 76663
No 62
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=85.24 E-value=16 Score=32.88 Aligned_cols=126 Identities=16% Similarity=0.200 Sum_probs=76.7
Q ss_pred CeeEEcccCcEEEEee-CCCcEEEEccCCcceeeCCCCCCCCCCceEEEEEeEECCCCCEEEEEEEEEeecCccceEEEE
Q 016891 101 RTPIIDSCNGLIAFKN-DENGIALWNPSTEEHLILPKFWGDLKDFMVVDGFGYDAVNDDYKVVRLVQLVIGNVGYTEIAV 179 (381)
Q Consensus 101 ~~~~~~s~~GLl~~~~-~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~d~~~~~ykVv~~~~~~~~~~~~~~~~v 179 (381)
.+.+++.-+|=|-+.. ..+.+.-.||.++.-..+|++...... .-.+..|+... +++.. .+.-.++.
T Consensus 191 pyGi~atpdGsvwyaslagnaiaridp~~~~aev~p~P~~~~~g---sRriwsdpig~----~witt-----wg~g~l~r 258 (353)
T COG4257 191 PYGICATPDGSVWYASLAGNAIARIDPFAGHAEVVPQPNALKAG---SRRIWSDPIGR----AWITT-----WGTGSLHR 258 (353)
T ss_pred CcceEECCCCcEEEEeccccceEEcccccCCcceecCCCccccc---ccccccCccCc----EEEec-----cCCceeeE
Confidence 3556777777775554 456788899999988888877542211 11233333211 22221 12267889
Q ss_pred EEcCCCcEEEcccCCCcceecCCCcEEECC-eeEEEEeeCCCCCCcCEEEEEECCCCeeeeecCCCCC
Q 016891 180 YSLRTNSWRRIRVDFPYYILHGWDGTFADG-HVHWLVTNNPEDYIENLIIAFNLKSEEFHEVPLPHLE 246 (381)
Q Consensus 180 yss~t~~W~~~~~~~p~~~~~~~~~v~~nG-~lYwl~~~~~~~~~~~~i~~fD~~~e~~~~i~~P~~~ 246 (381)
|+..+.+|.+-. . |...... .+++++. -.-|+..-+. ..|..||+++++|+.++.|..-
T Consensus 259 fdPs~~sW~eyp-L-Pgs~arp-ys~rVD~~grVW~sea~a-----gai~rfdpeta~ftv~p~pr~n 318 (353)
T COG4257 259 FDPSVTSWIEYP-L-PGSKARP-YSMRVDRHGRVWLSEADA-----GAIGRFDPETARFTVLPIPRPN 318 (353)
T ss_pred eCcccccceeee-C-CCCCCCc-ceeeeccCCcEEeecccc-----CceeecCcccceEEEecCCCCC
Confidence 999999999765 2 2111111 4455543 3446654332 2799999999999999888643
No 63
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=83.90 E-value=32 Score=30.84 Aligned_cols=114 Identities=14% Similarity=0.158 Sum_probs=67.2
Q ss_pred ECCeeEEEEeeCCCCCCcCEEEEEECCCCeee-eecCCCCCCCCCceeEEEEEECCeEEEEEecCCCceEEEEEECCcee
Q 016891 207 ADGHVHWLVTNNPEDYIENLIIAFNLKSEEFH-EVPLPHLENRNDVLVMFVGNFSGCLYFSCLCNYPQPVDIWVLMGCWT 285 (381)
Q Consensus 207 ~nG~lYwl~~~~~~~~~~~~i~~fD~~~e~~~-~i~~P~~~~~~~~~~~~L~~~~G~L~~~~~~~~~~~~~iW~l~~~W~ 285 (381)
.+|.||=-++... ...|-.+|+.+++.. ..++|... +.=-++..+++|+.+....+ ..=+|.. ....
T Consensus 54 ~~g~LyESTG~yG----~S~l~~~d~~tg~~~~~~~l~~~~-----FgEGit~~~d~l~qLTWk~~--~~f~yd~-~tl~ 121 (264)
T PF05096_consen 54 DDGTLYESTGLYG----QSSLRKVDLETGKVLQSVPLPPRY-----FGEGITILGDKLYQLTWKEG--TGFVYDP-NTLK 121 (264)
T ss_dssp ETTEEEEEECSTT----EEEEEEEETTTSSEEEEEE-TTT-------EEEEEEETTEEEEEESSSS--EEEEEET-TTTE
T ss_pred CCCEEEEeCCCCC----cEEEEEEECCCCcEEEEEECCccc-----cceeEEEECCEEEEEEecCC--eEEEEcc-ccce
Confidence 4677776554432 238999999998764 55888754 23357778999999998876 3333333 3455
Q ss_pred EEEEecCCCCCeeEEEEEEeCCCEEEEEecccCCccccCCcEEEEEeCCCCceeeeeEEEe
Q 016891 286 KTFSFPRSVGDYVKALAYSKSGGKVLVDKFEYGEDEDINRWELFWYDLQNQGAAADQVTIH 346 (381)
Q Consensus 286 ~~~~i~~~~~~~~~~~~~~~~g~~i~l~~~~~~~~~~~~~~~l~~yd~~t~~~~~~~v~~~ 346 (381)
++.+++- .+ .--|+..+|+.+++. ....+++..|+++-+.. +.|++.
T Consensus 122 ~~~~~~y-~~---EGWGLt~dg~~Li~S---------DGS~~L~~~dP~~f~~~-~~i~V~ 168 (264)
T PF05096_consen 122 KIGTFPY-PG---EGWGLTSDGKRLIMS---------DGSSRLYFLDPETFKEV-RTIQVT 168 (264)
T ss_dssp EEEEEE--SS---S--EEEECSSCEEEE----------SSSEEEEE-TTT-SEE-EEEE-E
T ss_pred EEEEEec-CC---cceEEEcCCCEEEEE---------CCccceEEECCcccceE-EEEEEE
Confidence 5555541 11 234445677756666 45668999999886552 555543
No 64
>PF07762 DUF1618: Protein of unknown function (DUF1618); InterPro: IPR011676 The proteins of this entry are mainly hypothetical proteins expressed by Oryza sativa.
Probab=83.49 E-value=10 Score=29.80 Aligned_cols=66 Identities=24% Similarity=0.262 Sum_probs=47.2
Q ss_pred EEEEEECCCC--eeeeecCCCCCCCC---------CceeEEEEEECCeEEEEEecCC--------CceEEEEEEC-----
Q 016891 226 LIIAFNLKSE--EFHEVPLPHLENRN---------DVLVMFVGNFSGCLYFSCLCNY--------PQPVDIWVLM----- 281 (381)
Q Consensus 226 ~i~~fD~~~e--~~~~i~~P~~~~~~---------~~~~~~L~~~~G~L~~~~~~~~--------~~~~~iW~l~----- 281 (381)
.|+.+|+..+ .++.+++|...... ......++..+|+|-++..... ...+.+|.|.
T Consensus 7 GIL~CD~~~~~p~l~~vpLP~~~~~~~~~~~~~~~~~~~R~v~v~~G~ikfV~i~~~~~~~~~~~~~~vt~Wtl~~~~~~ 86 (131)
T PF07762_consen 7 GILFCDVFDDSPVLRFVPLPPPCPPNRRDDRPRGSPESYRDVGVSGGKIKFVEIDGYEDDGPPSGGWTVTTWTLKDPEGS 86 (131)
T ss_pred CEEEEECCCCCccEEEEeCCCccccCcccccccCCchhCceEEecCCCEEEEEEecccCCCcccCCcEEEEEEeccCCCC
Confidence 5888998765 67778888754321 1223467778999988887642 3368999988
Q ss_pred -CceeEEEEec
Q 016891 282 -GCWTKTFSFP 291 (381)
Q Consensus 282 -~~W~~~~~i~ 291 (381)
.+|.+-++++
T Consensus 87 ~~~W~~d~~v~ 97 (131)
T PF07762_consen 87 SWEWKKDCEVD 97 (131)
T ss_pred CCCEEEeEEEE
Confidence 6799988887
No 65
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=82.90 E-value=2.9 Score=26.50 Aligned_cols=38 Identities=13% Similarity=0.173 Sum_probs=25.3
Q ss_pred CCeeEEEEeeCC-CCCCcCEEEEEECCCCeeeee-cCCCC
Q 016891 208 DGHVHWLVTNNP-EDYIENLIIAFNLKSEEFHEV-PLPHL 245 (381)
Q Consensus 208 nG~lYwl~~~~~-~~~~~~~i~~fD~~~e~~~~i-~~P~~ 245 (381)
|+.+|..++... .......+.+||+.+.+|+.+ +.|..
T Consensus 1 g~~~~vfGG~~~~~~~~~nd~~~~~~~~~~W~~~~~~P~~ 40 (49)
T PF13415_consen 1 GNKLYVFGGYDDDGGTRLNDVWVFDLDTNTWTRIGDLPPP 40 (49)
T ss_pred CCEEEEECCcCCCCCCEecCEEEEECCCCEEEECCCCCCC
Confidence 466777776551 222233689999999999988 44543
No 66
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=81.38 E-value=47 Score=31.25 Aligned_cols=105 Identities=9% Similarity=0.010 Sum_probs=61.6
Q ss_pred EEEEEECCCCee-eeecCCCCCCCCCceeEEEEEECCeEEEEEec-------CCCceEEEEEECCceeEEEEec--CC--
Q 016891 226 LIIAFNLKSEEF-HEVPLPHLENRNDVLVMFVGNFSGCLYFSCLC-------NYPQPVDIWVLMGCWTKTFSFP--RS-- 293 (381)
Q Consensus 226 ~i~~fD~~~e~~-~~i~~P~~~~~~~~~~~~L~~~~G~L~~~~~~-------~~~~~~~iW~l~~~W~~~~~i~--~~-- 293 (381)
.|.++|..+.+. ..++.-.. .+..+..-+..||++... .+...+.||-.+ ....+.+|+ +.
T Consensus 28 ~v~ViD~~~~~v~g~i~~G~~------P~~~~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~-t~~~~~~i~~p~~p~ 100 (352)
T TIGR02658 28 QVYTIDGEAGRVLGMTDGGFL------PNPVVASDGSFFAHASTVYSRIARGKRTDYVEVIDPQ-THLPIADIELPEGPR 100 (352)
T ss_pred eEEEEECCCCEEEEEEEccCC------CceeECCCCCEEEEEeccccccccCCCCCEEEEEECc-cCcEEeEEccCCCch
Confidence 689999988665 33443221 122233333466776662 012266776665 334444444 22
Q ss_pred --CCCeeEEEEEEeCCCEEEEEecccCCccccC-CcEEEEEeCCCCceeeeeEEEe
Q 016891 294 --VGDYVKALAYSKSGGKVLVDKFEYGEDEDIN-RWELFWYDLQNQGAAADQVTIH 346 (381)
Q Consensus 294 --~~~~~~~~~~~~~g~~i~l~~~~~~~~~~~~-~~~l~~yd~~t~~~~~~~v~~~ 346 (381)
.+.....+++.++|+.+|+.+ .+ ...+-+.|++++++ +.+|.++
T Consensus 101 ~~~~~~~~~~~ls~dgk~l~V~n--------~~p~~~V~VvD~~~~kv-v~ei~vp 147 (352)
T TIGR02658 101 FLVGTYPWMTSLTPDNKTLLFYQ--------FSPSPAVGVVDLEGKAF-VRMMDVP 147 (352)
T ss_pred hhccCccceEEECCCCCEEEEec--------CCCCCEEEEEECCCCcE-EEEEeCC
Confidence 124455788889999777763 23 56799999999999 2446553
No 67
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=81.02 E-value=52 Score=31.34 Aligned_cols=107 Identities=13% Similarity=0.070 Sum_probs=59.0
Q ss_pred cCcEEEEeeCCCcEEEEccCCcceeeCCCCCCCCCCceEEEEEeEECCCCCEEEEEEEEEeecCccceEEEEEEcCCC--
Q 016891 108 CNGLIAFKNDENGIALWNPSTEEHLILPKFWGDLKDFMVVDGFGYDAVNDDYKVVRLVQLVIGNVGYTEIAVYSLRTN-- 185 (381)
Q Consensus 108 ~~GLl~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~d~~~~~ykVv~~~~~~~~~~~~~~~~vyss~t~-- 185 (381)
.+|.|.+......++.+|+.||+.+.--..+... .....+ .++ +|+... ..-.+..++.+++
T Consensus 119 ~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~---~ssP~v-----~~~-~v~v~~-------~~g~l~ald~~tG~~ 182 (394)
T PRK11138 119 AGGKVYIGSEKGQVYALNAEDGEVAWQTKVAGEA---LSRPVV-----SDG-LVLVHT-------SNGMLQALNESDGAV 182 (394)
T ss_pred ECCEEEEEcCCCEEEEEECCCCCCcccccCCCce---ecCCEE-----ECC-EEEEEC-------CCCEEEEEEccCCCE
Confidence 4667766655667888899998765532221110 000011 112 222211 1135778888776
Q ss_pred cEEEcccCCCc-ceecCCCcEEECCeeEEEEeeCCCCCCcCEEEEEECCCC--eee
Q 016891 186 SWRRIRVDFPY-YILHGWDGTFADGHVHWLVTNNPEDYIENLIIAFNLKSE--EFH 238 (381)
Q Consensus 186 ~W~~~~~~~p~-~~~~~~~~v~~nG~lYwl~~~~~~~~~~~~i~~fD~~~e--~~~ 238 (381)
.|+.-. ..|. .......++..+|.+|+...++ .+.++|..+. .|+
T Consensus 183 ~W~~~~-~~~~~~~~~~~sP~v~~~~v~~~~~~g-------~v~a~d~~~G~~~W~ 230 (394)
T PRK11138 183 KWTVNL-DVPSLTLRGESAPATAFGGAIVGGDNG-------RVSAVLMEQGQLIWQ 230 (394)
T ss_pred eeeecC-CCCcccccCCCCCEEECCEEEEEcCCC-------EEEEEEccCChhhhe
Confidence 588754 2221 1111226777889888866554 7899998764 464
No 68
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=80.94 E-value=49 Score=30.94 Aligned_cols=117 Identities=13% Similarity=0.170 Sum_probs=68.2
Q ss_pred CCeeEEEEeeCCCCCCcCEEEEEECCCCe--eee---ecCCCCCCCCCceeEEEEEE-CCeEEEEEecCCCceEEEEEEC
Q 016891 208 DGHVHWLVTNNPEDYIENLIIAFNLKSEE--FHE---VPLPHLENRNDVLVMFVGNF-SGCLYFSCLCNYPQPVDIWVLM 281 (381)
Q Consensus 208 nG~lYwl~~~~~~~~~~~~i~~fD~~~e~--~~~---i~~P~~~~~~~~~~~~L~~~-~G~L~~~~~~~~~~~~~iW~l~ 281 (381)
+|..-|...-+. ..|..|++..+. ... +.+|.... ..++.-. +|+..++...... .+.++.+.
T Consensus 154 dg~~v~v~dlG~-----D~v~~~~~~~~~~~l~~~~~~~~~~G~G-----PRh~~f~pdg~~~Yv~~e~s~-~v~v~~~~ 222 (345)
T PF10282_consen 154 DGRFVYVPDLGA-----DRVYVYDIDDDTGKLTPVDSIKVPPGSG-----PRHLAFSPDGKYAYVVNELSN-TVSVFDYD 222 (345)
T ss_dssp TSSEEEEEETTT-----TEEEEEEE-TTS-TEEEEEEEECSTTSS-----EEEEEE-TTSSEEEEEETTTT-EEEEEEEE
T ss_pred CCCEEEEEecCC-----CEEEEEEEeCCCceEEEeeccccccCCC-----CcEEEEcCCcCEEEEecCCCC-cEEEEeec
Confidence 455444443332 278888887655 433 35665542 2234333 5654444433332 78888777
Q ss_pred ---CceeEEEEecCC---C-C-CeeEEEEEEeCCCEEEEEecccCCccccCCcEEEEEeC--CCCceeeeeEEE
Q 016891 282 ---GCWTKTFSFPRS---V-G-DYVKALAYSKSGGKVLVDKFEYGEDEDINRWELFWYDL--QNQGAAADQVTI 345 (381)
Q Consensus 282 ---~~W~~~~~i~~~---~-~-~~~~~~~~~~~g~~i~l~~~~~~~~~~~~~~~l~~yd~--~t~~~~~~~v~~ 345 (381)
..+..+..++.. . + ....-+.+.++|+.||+.+ ...+.|.+|++ +++++ +.++.
T Consensus 223 ~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsn--------r~~~sI~vf~~d~~~g~l--~~~~~ 286 (345)
T PF10282_consen 223 PSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSN--------RGSNSISVFDLDPATGTL--TLVQT 286 (345)
T ss_dssp TTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEE--------CTTTEEEEEEECTTTTTE--EEEEE
T ss_pred ccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEe--------ccCCEEEEEEEecCCCce--EEEEE
Confidence 567777777622 2 1 2566788888999777774 45667888887 56788 77744
No 69
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=79.95 E-value=57 Score=31.09 Aligned_cols=30 Identities=23% Similarity=0.308 Sum_probs=23.2
Q ss_pred CcEEECCeeEEEEeeCCCCCCcCEEEEEECCCC--eeee
Q 016891 203 DGTFADGHVHWLVTNNPEDYIENLIIAFNLKSE--EFHE 239 (381)
Q Consensus 203 ~~v~~nG~lYwl~~~~~~~~~~~~i~~fD~~~e--~~~~ 239 (381)
.++..+|.+|....++ .+.++|+.+. .|+.
T Consensus 251 sP~v~~~~vy~~~~~g-------~l~ald~~tG~~~W~~ 282 (394)
T PRK11138 251 TPVVVGGVVYALAYNG-------NLVALDLRSGQIVWKR 282 (394)
T ss_pred CcEEECCEEEEEEcCC-------eEEEEECCCCCEEEee
Confidence 6778899999877654 7999999864 5653
No 70
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=78.47 E-value=0.52 Score=44.38 Aligned_cols=37 Identities=22% Similarity=0.299 Sum_probs=33.7
Q ss_pred CCcHHHHHHHHccCCccceeEEEeehhhhhhhccChh
Q 016891 3 GLPTDINIDILSRLSVKCLLRFKCVSKSFCSLIDSQE 39 (381)
Q Consensus 3 ~LPdDll~eIL~rLP~~~l~r~r~VcK~W~~li~~p~ 39 (381)
.||.|++..||+-|..+++.|++.+|+.|+-+..|-.
T Consensus 74 ~LPpEl~lkvFS~LDtksl~r~a~~c~~~n~~AlD~~ 110 (483)
T KOG4341|consen 74 SLPPELLLKVFSMLDTKSLCRAAQCCTMWNKLALDGS 110 (483)
T ss_pred cCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhccc
Confidence 5999999999999999999999999999998876543
No 71
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=77.99 E-value=60 Score=30.31 Aligned_cols=149 Identities=14% Similarity=0.180 Sum_probs=79.2
Q ss_pred eEEEEEEcCCCc--EEEcc-cCCCcceecCCCcEEE--CC-eeEEEEeeCCCCCCcCEEEEEECC--CCeeeee----cC
Q 016891 175 TEIAVYSLRTNS--WRRIR-VDFPYYILHGWDGTFA--DG-HVHWLVTNNPEDYIENLIIAFNLK--SEEFHEV----PL 242 (381)
Q Consensus 175 ~~~~vyss~t~~--W~~~~-~~~p~~~~~~~~~v~~--nG-~lYwl~~~~~~~~~~~~i~~fD~~--~e~~~~i----~~ 242 (381)
..+.+|+...+. ..... ...|... .. +.+.+ +| .+|....... .|.+|++. +.+++.+ .+
T Consensus 166 D~v~~~~~~~~~~~l~~~~~~~~~~G~-GP-Rh~~f~pdg~~~Yv~~e~s~------~v~v~~~~~~~g~~~~~~~~~~~ 237 (345)
T PF10282_consen 166 DRVYVYDIDDDTGKLTPVDSIKVPPGS-GP-RHLAFSPDGKYAYVVNELSN------TVSVFDYDPSDGSLTEIQTISTL 237 (345)
T ss_dssp TEEEEEEE-TTS-TEEEEEEEECSTTS-SE-EEEEE-TTSSEEEEEETTTT------EEEEEEEETTTTEEEEEEEEESC
T ss_pred CEEEEEEEeCCCceEEEeeccccccCC-CC-cEEEEcCCcCEEEEecCCCC------cEEEEeecccCCceeEEEEeeec
Confidence 578888887654 54432 0111110 01 22332 44 5666654442 67777766 6666554 34
Q ss_pred CCCCCCCCceeEEEEEE-CCeEEEEEecCCCceEEEEEEC---CceeEEEEecCCCCCeeEEEEEEeCCCEEEEEecccC
Q 016891 243 PHLENRNDVLVMFVGNF-SGCLYFSCLCNYPQPVDIWVLM---GCWTKTFSFPRSVGDYVKALAYSKSGGKVLVDKFEYG 318 (381)
Q Consensus 243 P~~~~~~~~~~~~L~~~-~G~L~~~~~~~~~~~~~iW~l~---~~W~~~~~i~~~~~~~~~~~~~~~~g~~i~l~~~~~~ 318 (381)
|...... .....+... +|+..++..... +.+.++.++ ..-..+..++. -+...+-+.+.++|+.|++.+
T Consensus 238 ~~~~~~~-~~~~~i~ispdg~~lyvsnr~~-~sI~vf~~d~~~g~l~~~~~~~~-~G~~Pr~~~~s~~g~~l~Va~---- 310 (345)
T PF10282_consen 238 PEGFTGE-NAPAEIAISPDGRFLYVSNRGS-NSISVFDLDPATGTLTLVQTVPT-GGKFPRHFAFSPDGRYLYVAN---- 310 (345)
T ss_dssp ETTSCSS-SSEEEEEE-TTSSEEEEEECTT-TEEEEEEECTTTTTEEEEEEEEE-SSSSEEEEEE-TTSSEEEEEE----
T ss_pred ccccccc-CCceeEEEecCCCEEEEEeccC-CEEEEEEEecCCCceEEEEEEeC-CCCCccEEEEeCCCCEEEEEe----
Confidence 4432221 123344444 676544444433 289999995 45555555541 134467778888999677663
Q ss_pred CccccCCcEEEEE--eCCCCceeeeeEE
Q 016891 319 EDEDINRWELFWY--DLQNQGAAADQVT 344 (381)
Q Consensus 319 ~~~~~~~~~l~~y--d~~t~~~~~~~v~ 344 (381)
...+.|.+| |.+++++ +.+.
T Consensus 311 ----~~s~~v~vf~~d~~tG~l--~~~~ 332 (345)
T PF10282_consen 311 ----QDSNTVSVFDIDPDTGKL--TPVG 332 (345)
T ss_dssp ----TTTTEEEEEEEETTTTEE--EEEE
T ss_pred ----cCCCeEEEEEEeCCCCcE--EEec
Confidence 334455555 6689999 7774
No 72
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=77.22 E-value=60 Score=29.88 Aligned_cols=144 Identities=9% Similarity=0.029 Sum_probs=69.4
Q ss_pred eEEEEEEcC-CCcEEEcccCCCcceecCCCcEEE--CCeeEEEEeeCCCCCCcCEEEEEECCCCe-e-eeec-CCCCCCC
Q 016891 175 TEIAVYSLR-TNSWRRIRVDFPYYILHGWDGTFA--DGHVHWLVTNNPEDYIENLIIAFNLKSEE-F-HEVP-LPHLENR 248 (381)
Q Consensus 175 ~~~~vyss~-t~~W~~~~~~~p~~~~~~~~~v~~--nG~lYwl~~~~~~~~~~~~i~~fD~~~e~-~-~~i~-~P~~~~~ 248 (381)
..+.+|+.. ++.+..+. ..+... ....+.+ +|...+.+.... ..|.+||+.+.. . ..+. .+....
T Consensus 57 ~~i~~~~~~~~g~l~~~~-~~~~~~--~p~~i~~~~~g~~l~v~~~~~-----~~v~v~~~~~~g~~~~~~~~~~~~~~- 127 (330)
T PRK11028 57 FRVLSYRIADDGALTFAA-ESPLPG--SPTHISTDHQGRFLFSASYNA-----NCVSVSPLDKDGIPVAPIQIIEGLEG- 127 (330)
T ss_pred CcEEEEEECCCCceEEee-eecCCC--CceEEEECCCCCEEEEEEcCC-----CeEEEEEECCCCCCCCceeeccCCCc-
Confidence 345566665 46676555 332211 1133433 465444443322 278889886421 1 1111 111110
Q ss_pred CCceeEEEEEECCeEEEEEecCCCceEEEEEEC--CceeEE----EEecCCCCCeeEEEEEEeCCCEEEEEecccCCccc
Q 016891 249 NDVLVMFVGNFSGCLYFSCLCNYPQPVDIWVLM--GCWTKT----FSFPRSVGDYVKALAYSKSGGKVLVDKFEYGEDED 322 (381)
Q Consensus 249 ~~~~~~~L~~~~G~L~~~~~~~~~~~~~iW~l~--~~W~~~----~~i~~~~~~~~~~~~~~~~g~~i~l~~~~~~~~~~ 322 (381)
.......-+|+..++...... .+.||.++ ..-... ..++ .+...+-+.+.++|+.+++..
T Consensus 128 ---~~~~~~~p~g~~l~v~~~~~~-~v~v~d~~~~g~l~~~~~~~~~~~--~g~~p~~~~~~pdg~~lyv~~-------- 193 (330)
T PRK11028 128 ---CHSANIDPDNRTLWVPCLKED-RIRLFTLSDDGHLVAQEPAEVTTV--EGAGPRHMVFHPNQQYAYCVN-------- 193 (330)
T ss_pred ---ccEeEeCCCCCEEEEeeCCCC-EEEEEEECCCCcccccCCCceecC--CCCCCceEEECCCCCEEEEEe--------
Confidence 011112335654444443332 88999887 221110 1122 233345577788999676662
Q ss_pred cCCcEEEEEeCC--CCceeeeeE
Q 016891 323 INRWELFWYDLQ--NQGAAADQV 343 (381)
Q Consensus 323 ~~~~~l~~yd~~--t~~~~~~~v 343 (381)
.....+.+||++ ++++ +.+
T Consensus 194 ~~~~~v~v~~~~~~~~~~--~~~ 214 (330)
T PRK11028 194 ELNSSVDVWQLKDPHGEI--ECV 214 (330)
T ss_pred cCCCEEEEEEEeCCCCCE--EEE
Confidence 235678888887 4565 444
No 73
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=75.43 E-value=6.3 Score=24.92 Aligned_cols=37 Identities=19% Similarity=0.283 Sum_probs=26.7
Q ss_pred EEEEEECCeEEEEEec----CCCceEEEEEEC---CceeEEEEe
Q 016891 254 MFVGNFSGCLYFSCLC----NYPQPVDIWVLM---GCWTKTFSF 290 (381)
Q Consensus 254 ~~L~~~~G~L~~~~~~----~~~~~~~iW~l~---~~W~~~~~i 290 (381)
...++.+++|+++... ......++|.++ .+|..+..+
T Consensus 5 hs~~~~~~kiyv~GG~~~~~~~~~~~~v~~~d~~t~~W~~~~~~ 48 (49)
T PF07646_consen 5 HSAVVLDGKIYVFGGYGTDNGGSSSNDVWVFDTETNQWTELSPM 48 (49)
T ss_pred eEEEEECCEEEEECCcccCCCCcccceeEEEECCCCEEeecCCC
Confidence 4566789999999988 223356777777 899876543
No 74
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=73.89 E-value=67 Score=28.81 Aligned_cols=136 Identities=10% Similarity=-0.004 Sum_probs=77.0
Q ss_pred ceEEEEEEcCCCcEEEcccCCCcceecCC-CcEEECCeeEEEEeeCCCCCCcCEEEEEECCCC-eeeeecCCCCCCCCCc
Q 016891 174 YTEIAVYSLRTNSWRRIRVDFPYYILHGW-DGTFADGHVHWLVTNNPEDYIENLIIAFNLKSE-EFHEVPLPHLENRNDV 251 (381)
Q Consensus 174 ~~~~~vyss~t~~W~~~~~~~p~~~~~~~-~~v~~nG~lYwl~~~~~~~~~~~~i~~fD~~~e-~~~~i~~P~~~~~~~~ 251 (381)
...+..|+..++.=.... .+|... +. ..+.+|+.||-|..... ....||..+= .-..++.|.+
T Consensus 67 ~S~l~~~d~~tg~~~~~~-~l~~~~--FgEGit~~~d~l~qLTWk~~------~~f~yd~~tl~~~~~~~y~~E------ 131 (264)
T PF05096_consen 67 QSSLRKVDLETGKVLQSV-PLPPRY--FGEGITILGDKLYQLTWKEG------TGFVYDPNTLKKIGTFPYPGE------ 131 (264)
T ss_dssp EEEEEEEETTTSSEEEEE-E-TTT----EEEEEEETTEEEEEESSSS------EEEEEETTTTEEEEEEE-SSS------
T ss_pred cEEEEEEECCCCcEEEEE-ECCccc--cceeEEEECCEEEEEEecCC------eEEEEccccceEEEEEecCCc------
Confidence 367888999998654443 333322 22 45678999999998764 7899999862 2233345432
Q ss_pred eeEEEEEECCeEEEEEecCCCceEEEEEEC-CceeEEEEec-CCCC----CeeEEEEEEeCCCEEEEEecccCCccccCC
Q 016891 252 LVMFVGNFSGCLYFSCLCNYPQPVDIWVLM-GCWTKTFSFP-RSVG----DYVKALAYSKSGGKVLVDKFEYGEDEDINR 325 (381)
Q Consensus 252 ~~~~L~~~~G~L~~~~~~~~~~~~~iW~l~-~~W~~~~~i~-~~~~----~~~~~~~~~~~g~~i~l~~~~~~~~~~~~~ 325 (381)
..-|+.-+..|.+-.... .|+.++ .....+.+|. ..-+ ..--.-++ +|. |+-+. ...
T Consensus 132 -GWGLt~dg~~Li~SDGS~-----~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i--~G~-IyANV--------W~t 194 (264)
T PF05096_consen 132 -GWGLTSDGKRLIMSDGSS-----RLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI--NGK-IYANV--------WQT 194 (264)
T ss_dssp ---EEEECSSCEEEE-SSS-----EEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE--TTE-EEEEE--------TTS
T ss_pred -ceEEEcCCCEEEEECCcc-----ceEEECCcccceEEEEEEEECCEECCCcEeEEEE--cCE-EEEEe--------CCC
Confidence 223554445555554432 477777 6666666665 2111 11111121 566 88884 245
Q ss_pred cEEEEEeCCCCceeeeeE
Q 016891 326 WELFWYDLQNQGAAADQV 343 (381)
Q Consensus 326 ~~l~~yd~~t~~~~~~~v 343 (381)
+.|+..|++|+++ ..+
T Consensus 195 d~I~~Idp~tG~V--~~~ 210 (264)
T PF05096_consen 195 DRIVRIDPETGKV--VGW 210 (264)
T ss_dssp SEEEEEETTT-BE--EEE
T ss_pred CeEEEEeCCCCeE--EEE
Confidence 6799999999999 554
No 75
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=73.70 E-value=65 Score=28.55 Aligned_cols=92 Identities=14% Similarity=0.145 Sum_probs=49.1
Q ss_pred EEEEEECCCCee-eeecCCCCCCCCCceeEEEEE-ECCe-EEEEEecCCCceEEEEEEC-CceeEEEEecCCCCCeeEEE
Q 016891 226 LIIAFNLKSEEF-HEVPLPHLENRNDVLVMFVGN-FSGC-LYFSCLCNYPQPVDIWVLM-GCWTKTFSFPRSVGDYVKAL 301 (381)
Q Consensus 226 ~i~~fD~~~e~~-~~i~~P~~~~~~~~~~~~L~~-~~G~-L~~~~~~~~~~~~~iW~l~-~~W~~~~~i~~~~~~~~~~~ 301 (381)
.|..+|+.+.+. ..+...... . .+.. -+|+ |++....+. .+.+|..+ .+... .+.. +.....+
T Consensus 12 ~v~~~d~~t~~~~~~~~~~~~~-----~--~l~~~~dg~~l~~~~~~~~--~v~~~d~~~~~~~~--~~~~--~~~~~~~ 78 (300)
T TIGR03866 12 TISVIDTATLEVTRTFPVGQRP-----R--GITLSKDGKLLYVCASDSD--TIQVIDLATGEVIG--TLPS--GPDPELF 78 (300)
T ss_pred EEEEEECCCCceEEEEECCCCC-----C--ceEECCCCCEEEEEECCCC--eEEEEECCCCcEEE--eccC--CCCccEE
Confidence 688888876554 222322111 1 1222 3555 444443333 78888877 44332 2331 1113445
Q ss_pred EEEeCCCEEEEEecccCCccccCCcEEEEEeCCCCce
Q 016891 302 AYSKSGGKVLVDKFEYGEDEDINRWELFWYDLQNQGA 338 (381)
Q Consensus 302 ~~~~~g~~i~l~~~~~~~~~~~~~~~l~~yd~~t~~~ 338 (381)
.+.++|+.+++.. .....+.+||+++++.
T Consensus 79 ~~~~~g~~l~~~~--------~~~~~l~~~d~~~~~~ 107 (300)
T TIGR03866 79 ALHPNGKILYIAN--------EDDNLVTVIDIETRKV 107 (300)
T ss_pred EECCCCCEEEEEc--------CCCCeEEEEECCCCeE
Confidence 6777888566652 2345799999988654
No 76
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=71.47 E-value=8.3 Score=24.34 Aligned_cols=22 Identities=9% Similarity=0.069 Sum_probs=18.4
Q ss_pred CcEEEEccCCcceeeCCCCCCC
Q 016891 119 NGIALWNPSTEEHLILPKFWGD 140 (381)
Q Consensus 119 ~~~~V~NP~T~~~~~LP~~~~~ 140 (381)
+.++++||.|++|.+++..|..
T Consensus 19 nd~~~~~~~~~~W~~~~~~P~~ 40 (49)
T PF13415_consen 19 NDVWVFDLDTNTWTRIGDLPPP 40 (49)
T ss_pred cCEEEEECCCCEEEECCCCCCC
Confidence 5789999999999999766543
No 77
>PRK05137 tolB translocation protein TolB; Provisional
Probab=71.34 E-value=1e+02 Score=29.83 Aligned_cols=121 Identities=15% Similarity=0.162 Sum_probs=63.5
Q ss_pred EECCeeEEEEeeCCCCCCcCEEEEEECCCCeeeeecCCCCCCCCCceeEEEEEECC-eEEEEEecCCCceEEEEEEC-Cc
Q 016891 206 FADGHVHWLVTNNPEDYIENLIIAFNLKSEEFHEVPLPHLENRNDVLVMFVGNFSG-CLYFSCLCNYPQPVDIWVLM-GC 283 (381)
Q Consensus 206 ~~nG~lYwl~~~~~~~~~~~~i~~fD~~~e~~~~i~~P~~~~~~~~~~~~L~~~~G-~L~~~~~~~~~~~~~iW~l~-~~ 283 (381)
+++..|.++............|...|.....-+.+...... ...+... -+| +|.++....+...+-+|.++ ..
T Consensus 163 ~f~~~iafv~~~~~~~~~~~~l~~~d~dg~~~~~lt~~~~~----v~~p~wS-pDG~~lay~s~~~g~~~i~~~dl~~g~ 237 (435)
T PRK05137 163 YFDTRIVYVAESGPKNKRIKRLAIMDQDGANVRYLTDGSSL----VLTPRFS-PNRQEITYMSYANGRPRVYLLDLETGQ 237 (435)
T ss_pred cCCCeEEEEEeeCCCCCcceEEEEECCCCCCcEEEecCCCC----eEeeEEC-CCCCEEEEEEecCCCCEEEEEECCCCc
Confidence 46778888876432111134788888876544443211111 1122222 245 56666654443355555555 44
Q ss_pred eeEEEEecCCCCCeeEEEEEEeCCCEEEEEecccCCccccCCcEEEEEeCCCCceeeeeE
Q 016891 284 WTKTFSFPRSVGDYVKALAYSKSGGKVLVDKFEYGEDEDINRWELFWYDLQNQGAAADQV 343 (381)
Q Consensus 284 W~~~~~i~~~~~~~~~~~~~~~~g~~i~l~~~~~~~~~~~~~~~l~~yd~~t~~~~~~~v 343 (381)
..++...+ + ...-..+.++|+.|++... . .....|+.+|+++++. +++
T Consensus 238 ~~~l~~~~---g-~~~~~~~SPDG~~la~~~~-----~-~g~~~Iy~~d~~~~~~--~~L 285 (435)
T PRK05137 238 RELVGNFP---G-MTFAPRFSPDGRKVVMSLS-----Q-GGNTDIYTMDLRSGTT--TRL 285 (435)
T ss_pred EEEeecCC---C-cccCcEECCCCCEEEEEEe-----c-CCCceEEEEECCCCce--EEc
Confidence 43332222 1 1223355678887766621 0 1234699999999998 777
No 78
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=69.76 E-value=91 Score=28.62 Aligned_cols=94 Identities=14% Similarity=0.113 Sum_probs=49.8
Q ss_pred CcEEECCeeEEEEeeCCCCCCcCEEEEEECCCCee-eeecCCCCCCCCCceeEEEEEECCeE---EEEEecCCCceEEEE
Q 016891 203 DGTFADGHVHWLVTNNPEDYIENLIIAFNLKSEEF-HEVPLPHLENRNDVLVMFVGNFSGCL---YFSCLCNYPQPVDIW 278 (381)
Q Consensus 203 ~~v~~nG~lYwl~~~~~~~~~~~~i~~fD~~~e~~-~~i~~P~~~~~~~~~~~~L~~~~G~L---~~~~~~~~~~~~~iW 278 (381)
.+|.++|-.-.-+..++ .|-.||+.+..= ..+-.+.+ .+...-..+-+ .++...++. +|.||
T Consensus 47 tavAVs~~~~aSGssDe------tI~IYDm~k~~qlg~ll~Hag-------sitaL~F~~~~S~shLlS~sdDG-~i~iw 112 (362)
T KOG0294|consen 47 TALAVSGPYVASGSSDE------TIHIYDMRKRKQLGILLSHAG-------SITALKFYPPLSKSHLLSGSDDG-HIIIW 112 (362)
T ss_pred eEEEecceeEeccCCCC------cEEEEeccchhhhcceecccc-------ceEEEEecCCcchhheeeecCCC-cEEEE
Confidence 66777776433333332 799999886432 22222211 12222222222 344444443 88898
Q ss_pred EECCceeEEEEecCCCCCeeEEEEEEeCCCEEEEE
Q 016891 279 VLMGCWTKTFSFPRSVGDYVKALAYSKSGGKVLVD 313 (381)
Q Consensus 279 ~l~~~W~~~~~i~~~~~~~~~~~~~~~~g~~i~l~ 313 (381)
... .|+.+..+-..-++ ..-+.+++.|+ |-|.
T Consensus 113 ~~~-~W~~~~slK~H~~~-Vt~lsiHPS~K-LALs 144 (362)
T KOG0294|consen 113 RVG-SWELLKSLKAHKGQ-VTDLSIHPSGK-LALS 144 (362)
T ss_pred EcC-CeEEeeeecccccc-cceeEecCCCc-eEEE
Confidence 765 78777777632222 55566666666 5444
No 79
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=68.60 E-value=1e+02 Score=32.52 Aligned_cols=31 Identities=13% Similarity=0.110 Sum_probs=25.0
Q ss_pred CcEEECCeeEEEEeeCCCCCCcCEEEEEECCC--Ceeeee
Q 016891 203 DGTFADGHVHWLVTNNPEDYIENLIIAFNLKS--EEFHEV 240 (381)
Q Consensus 203 ~~v~~nG~lYwl~~~~~~~~~~~~i~~fD~~~--e~~~~i 240 (381)
+++.++|.+|...... .|.++|..+ +.|+.-
T Consensus 189 TPlvvgg~lYv~t~~~-------~V~ALDa~TGk~lW~~d 221 (764)
T TIGR03074 189 TPLKVGDTLYLCTPHN-------KVIALDAATGKEKWKFD 221 (764)
T ss_pred CCEEECCEEEEECCCC-------eEEEEECCCCcEEEEEc
Confidence 7899999999977654 799999875 677654
No 80
>KOG2437 consensus Muskelin [Signal transduction mechanisms]
Probab=66.76 E-value=17 Score=35.37 Aligned_cols=142 Identities=8% Similarity=-0.063 Sum_probs=75.5
Q ss_pred EEccCCcceeeCCCCCCCCC------CceEEEEEeEECCCCCEEEEEEEEEeecC--ccceEEEEEEcCCCcEEEccc--
Q 016891 123 LWNPSTEEHLILPKFWGDLK------DFMVVDGFGYDAVNDDYKVVRLVQLVIGN--VGYTEIAVYSLRTNSWRRIRV-- 192 (381)
Q Consensus 123 V~NP~T~~~~~LP~~~~~~~------~~~~~~~~~~d~~~~~ykVv~~~~~~~~~--~~~~~~~vyss~t~~W~~~~~-- 192 (381)
.=-|.+-.|..+|+...... .......+.+++.+. ++--+...+ .....+++|+-+.+.|..+..
T Consensus 233 ~q~ey~~~W~~i~~~~~~~~~~~~~p~~RgGHQMV~~~~~~-----CiYLYGGWdG~~~l~DFW~Y~v~e~~W~~iN~~t 307 (723)
T KOG2437|consen 233 SQQEYKPRWSQIIPKSTKGDGEDNRPGMRGGHQMVIDVQTE-----CVYLYGGWDGTQDLADFWAYSVKENQWTCINRDT 307 (723)
T ss_pred hcccccccccccCchhhcccccccCccccCcceEEEeCCCc-----EEEEecCcccchhHHHHHhhcCCcceeEEeecCC
Confidence 33577888888886653211 111223344444333 111111111 123679999999999998862
Q ss_pred CCCcceecCCCcEEE--CCeeEEEEeeCCCC-----CCcCEEEEEECCCCeeeeecCCCCCCCCC--ceeEEEEE--ECC
Q 016891 193 DFPYYILHGWDGTFA--DGHVHWLVTNNPED-----YIENLIIAFNLKSEEFHEVPLPHLENRND--VLVMFVGN--FSG 261 (381)
Q Consensus 193 ~~p~~~~~~~~~v~~--nG~lYwl~~~~~~~-----~~~~~i~~fD~~~e~~~~i~~P~~~~~~~--~~~~~L~~--~~G 261 (381)
..|....+. +-|.. .-+||-++..-..+ ..+.-+-.||..+..|..+..-...+..+ -+...+++ -+|
T Consensus 308 ~~PG~RsCH-RMVid~S~~KLYLlG~Y~~sS~r~~~s~RsDfW~FDi~~~~W~~ls~dt~~dGGP~~vfDHqM~Vd~~k~ 386 (723)
T KOG2437|consen 308 EGPGARSCH-RMVIDISRRKLYLLGRYLDSSVRNSKSLRSDFWRFDIDTNTWMLLSEDTAADGGPKLVFDHQMCVDSEKH 386 (723)
T ss_pred CCCcchhhh-hhhhhhhHhHHhhhhhccccccccccccccceEEEecCCceeEEecccccccCCcceeecceeeEecCcc
Confidence 233222111 22222 23788877653321 23446899999999999985433322211 12233443 356
Q ss_pred eEEEEEecC
Q 016891 262 CLYFSCLCN 270 (381)
Q Consensus 262 ~L~~~~~~~ 270 (381)
.+|+.+.+.
T Consensus 387 ~iyVfGGr~ 395 (723)
T KOG2437|consen 387 MIYVFGGRI 395 (723)
T ss_pred eEEEecCee
Confidence 688888764
No 81
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=66.12 E-value=1.2e+02 Score=28.56 Aligned_cols=108 Identities=15% Similarity=0.173 Sum_probs=55.2
Q ss_pred cCcEEEEeeCCCcEEEEccCCcceeeCCCCCCCCCCceEEEEEeEECCCCCEEEEEEEEEeecCccceEEEEEEcCCC--
Q 016891 108 CNGLIAFKNDENGIALWNPSTEEHLILPKFWGDLKDFMVVDGFGYDAVNDDYKVVRLVQLVIGNVGYTEIAVYSLRTN-- 185 (381)
Q Consensus 108 ~~GLl~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~d~~~~~ykVv~~~~~~~~~~~~~~~~vyss~t~-- 185 (381)
.+|.+.+......++.+|+.||+.+.--..+... .....+ .++ +|+.... .-.+..++.+++
T Consensus 104 ~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~---~~~p~v-----~~~-~v~v~~~-------~g~l~a~d~~tG~~ 167 (377)
T TIGR03300 104 DGGLVFVGTEKGEVIALDAEDGKELWRAKLSSEV---LSPPLV-----ANG-LVVVRTN-------DGRLTALDAATGER 167 (377)
T ss_pred cCCEEEEEcCCCEEEEEECCCCcEeeeeccCcee---ecCCEE-----ECC-EEEEECC-------CCeEEEEEcCCCce
Confidence 3666666555567778888887755422211100 000001 122 2222211 135677787776
Q ss_pred cEEEcccCCCcceecCCCcEEECCeeEEEEeeCCCCCCcCEEEEEECCCC--eee
Q 016891 186 SWRRIRVDFPYYILHGWDGTFADGHVHWLVTNNPEDYIENLIIAFNLKSE--EFH 238 (381)
Q Consensus 186 ~W~~~~~~~p~~~~~~~~~v~~nG~lYwl~~~~~~~~~~~~i~~fD~~~e--~~~ 238 (381)
.|+.-....+........++..+|.+|.-...+ .+.++|+.+. .|+
T Consensus 168 ~W~~~~~~~~~~~~~~~sp~~~~~~v~~~~~~g-------~v~ald~~tG~~~W~ 215 (377)
T TIGR03300 168 LWTYSRVTPALTLRGSASPVIADGGVLVGFAGG-------KLVALDLQTGQPLWE 215 (377)
T ss_pred eeEEccCCCceeecCCCCCEEECCEEEEECCCC-------EEEEEEccCCCEeee
Confidence 587644121111111226677888877644433 7999998764 454
No 82
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=66.05 E-value=1.1e+02 Score=28.36 Aligned_cols=107 Identities=13% Similarity=0.089 Sum_probs=63.3
Q ss_pred EEEEEECCCCeeeee---cCCCCCCCCCceeEEEEEECCeEEEEEecCCCceEEEEEEC---CceeEEEEec---CCCC-
Q 016891 226 LIIAFNLKSEEFHEV---PLPHLENRNDVLVMFVGNFSGCLYFSCLCNYPQPVDIWVLM---GCWTKTFSFP---RSVG- 295 (381)
Q Consensus 226 ~i~~fD~~~e~~~~i---~~P~~~~~~~~~~~~L~~~~G~L~~~~~~~~~~~~~iW~l~---~~W~~~~~i~---~~~~- 295 (381)
.|..||+........ .++++. +.+..+.--+|+++++...-.. ++.+|..+ .+-..+.++. ..+.
T Consensus 168 ri~~y~~~dg~L~~~~~~~v~~G~----GPRHi~FHpn~k~aY~v~EL~s-tV~v~~y~~~~g~~~~lQ~i~tlP~dF~g 242 (346)
T COG2706 168 RIFLYDLDDGKLTPADPAEVKPGA----GPRHIVFHPNGKYAYLVNELNS-TVDVLEYNPAVGKFEELQTIDTLPEDFTG 242 (346)
T ss_pred eEEEEEcccCccccccccccCCCC----CcceEEEcCCCcEEEEEeccCC-EEEEEEEcCCCceEEEeeeeccCccccCC
Confidence 566666654444332 233332 2232333447887776665444 88999988 5566665655 2232
Q ss_pred -CeeEEEEEEeCCCEEEEEecccCCccccCCc--EEEEEeCCCCceeeeeEEEec
Q 016891 296 -DYVKALAYSKSGGKVLVDKFEYGEDEDINRW--ELFWYDLQNQGAAADQVTIHG 347 (381)
Q Consensus 296 -~~~~~~~~~~~g~~i~l~~~~~~~~~~~~~~--~l~~yd~~t~~~~~~~v~~~~ 347 (381)
....-+.+..+|..++..+ ...+ .+|.-|..++++ +.+....
T Consensus 243 ~~~~aaIhis~dGrFLYasN--------Rg~dsI~~f~V~~~~g~L--~~~~~~~ 287 (346)
T COG2706 243 TNWAAAIHISPDGRFLYASN--------RGHDSIAVFSVDPDGGKL--ELVGITP 287 (346)
T ss_pred CCceeEEEECCCCCEEEEec--------CCCCeEEEEEEcCCCCEE--EEEEEec
Confidence 4566677788999666663 2223 377778888888 7776543
No 83
>PRK04043 tolB translocation protein TolB; Provisional
Probab=65.67 E-value=1.3e+02 Score=29.01 Aligned_cols=101 Identities=16% Similarity=0.200 Sum_probs=58.8
Q ss_pred EEEEEECCCCeeeeecCCCCCCCCCceeEEEEEECC-eEEEEEecCCCceEEEEEEC---CceeEEEEecCCCCCeeEEE
Q 016891 226 LIIAFNLKSEEFHEVPLPHLENRNDVLVMFVGNFSG-CLYFSCLCNYPQPVDIWVLM---GCWTKTFSFPRSVGDYVKAL 301 (381)
Q Consensus 226 ~i~~fD~~~e~~~~i~~P~~~~~~~~~~~~L~~~~G-~L~~~~~~~~~~~~~iW~l~---~~W~~~~~i~~~~~~~~~~~ 301 (381)
.|..+|+.+.+-+.+-...... ..... .-+| +|.+.....+ .-+||.++ ..+.++...+ +....+
T Consensus 214 ~Iyv~dl~tg~~~~lt~~~g~~----~~~~~-SPDG~~la~~~~~~g--~~~Iy~~dl~~g~~~~LT~~~---~~d~~p- 282 (419)
T PRK04043 214 TLYKYNLYTGKKEKIASSQGML----VVSDV-SKDGSKLLLTMAPKG--QPDIYLYDTNTKTLTQITNYP---GIDVNG- 282 (419)
T ss_pred EEEEEECCCCcEEEEecCCCcE----EeeEE-CCCCCEEEEEEccCC--CcEEEEEECCCCcEEEcccCC---CccCcc-
Confidence 6889999887776662221210 11222 2366 4555544333 56788887 5555543322 111122
Q ss_pred EEEeCCCEEEEEecccCCccccCCcEEEEEeCCCCceeeeeEEE
Q 016891 302 AYSKSGGKVLVDKFEYGEDEDINRWELFWYDLQNQGAAADQVTI 345 (381)
Q Consensus 302 ~~~~~g~~i~l~~~~~~~~~~~~~~~l~~yd~~t~~~~~~~v~~ 345 (381)
.+.++|+.|++.+.. .....|+.+|+++++. +++..
T Consensus 283 ~~SPDG~~I~F~Sdr------~g~~~Iy~~dl~~g~~--~rlt~ 318 (419)
T PRK04043 283 NFVEDDKRIVFVSDR------LGYPNIFMKKLNSGSV--EQVVF 318 (419)
T ss_pred EECCCCCEEEEEECC------CCCceEEEEECCCCCe--EeCcc
Confidence 466789889888421 1234799999999999 88843
No 84
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=64.10 E-value=1.6e+02 Score=29.27 Aligned_cols=110 Identities=12% Similarity=0.044 Sum_probs=65.4
Q ss_pred EEEEEECCCCeeeeecCCCCCCCCCceeEEEEEECCeEEEEEecCCCceEEEEEEC-----CceeEEEEecCCCCCeeEE
Q 016891 226 LIIAFNLKSEEFHEVPLPHLENRNDVLVMFVGNFSGCLYFSCLCNYPQPVDIWVLM-----GCWTKTFSFPRSVGDYVKA 300 (381)
Q Consensus 226 ~i~~fD~~~e~~~~i~~P~~~~~~~~~~~~L~~~~G~L~~~~~~~~~~~~~iW~l~-----~~W~~~~~i~~~~~~~~~~ 300 (381)
.|+.|++...+.+..-.-... .......-.+.++..+.......+++.|..+ ..|.... ..+.-
T Consensus 81 ~v~~ys~~~g~it~~~st~~h----~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~-------~~~~s 149 (541)
T KOG4547|consen 81 SVLLYSVAGGEITAKLSTDKH----YGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQK-------PLVSS 149 (541)
T ss_pred cEEEEEecCCeEEEEEecCCC----CCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCC-------Cccce
Confidence 689999887765443211111 0112222234556555555544478888777 2333211 23466
Q ss_pred EEEEeCCCEEEEEecccCCccccCCcEEEEEeCCCCceeeeeEEEecCCCCceeEEEEeec
Q 016891 301 LAYSKSGGKVLVDKFEYGEDEDINRWELFWYDLQNQGAAADQVTIHGVPQGCRDTIVCVDS 361 (381)
Q Consensus 301 ~~~~~~g~~i~l~~~~~~~~~~~~~~~l~~yd~~t~~~~~~~v~~~~~~~~~~~~~~y~~s 361 (381)
+++.+||+ +++. ..+.+-.||.++++. ...+.+...- .+.+.|+..
T Consensus 150 l~is~D~~-~l~~----------as~~ik~~~~~~kev---v~~ftgh~s~-v~t~~f~~~ 195 (541)
T KOG4547|consen 150 LCISPDGK-ILLT----------ASRQIKVLDIETKEV---VITFTGHGSP-VRTLSFTTL 195 (541)
T ss_pred EEEcCCCC-EEEe----------ccceEEEEEccCceE---EEEecCCCcc-eEEEEEEEe
Confidence 78888988 7776 346799999999998 4445665544 566777666
No 85
>PRK04792 tolB translocation protein TolB; Provisional
Probab=63.60 E-value=1.5e+02 Score=28.89 Aligned_cols=113 Identities=13% Similarity=0.180 Sum_probs=60.6
Q ss_pred CC-eeEEEEeeCCCCCCcCEEEEEECCCCeeeee-cCCCCCCCCCceeEEEEEECCe-EEEEEecCCCceEEEEEEC---
Q 016891 208 DG-HVHWLVTNNPEDYIENLIIAFNLKSEEFHEV-PLPHLENRNDVLVMFVGNFSGC-LYFSCLCNYPQPVDIWVLM--- 281 (381)
Q Consensus 208 nG-~lYwl~~~~~~~~~~~~i~~fD~~~e~~~~i-~~P~~~~~~~~~~~~L~~~~G~-L~~~~~~~~~~~~~iW~l~--- 281 (381)
|| .|.|....... ..|..+|+.+.+-..+ ..+... ..+.. .-+|+ |+++...++ ..+||.++
T Consensus 228 DG~~La~~s~~~g~----~~L~~~dl~tg~~~~lt~~~g~~-----~~~~w-SPDG~~La~~~~~~g--~~~Iy~~dl~t 295 (448)
T PRK04792 228 DGRKLAYVSFENRK----AEIFVQDIYTQVREKVTSFPGIN-----GAPRF-SPDGKKLALVLSKDG--QPEIYVVDIAT 295 (448)
T ss_pred CCCEEEEEEecCCC----cEEEEEECCCCCeEEecCCCCCc-----CCeeE-CCCCCEEEEEEeCCC--CeEEEEEECCC
Confidence 45 46665543321 3688999987766544 333211 11222 22554 555544433 56777776
Q ss_pred CceeEEEEecCCCCCeeEEEEEEeCCCEEEEEecccCCccccCCcEEEEEeCCCCceeeeeEE
Q 016891 282 GCWTKTFSFPRSVGDYVKALAYSKSGGKVLVDKFEYGEDEDINRWELFWYDLQNQGAAADQVT 344 (381)
Q Consensus 282 ~~W~~~~~i~~~~~~~~~~~~~~~~g~~i~l~~~~~~~~~~~~~~~l~~yd~~t~~~~~~~v~ 344 (381)
.+..+ +.... .......+.++|..|++.+. . .....++.+|+++++. +++.
T Consensus 296 g~~~~---lt~~~-~~~~~p~wSpDG~~I~f~s~-----~-~g~~~Iy~~dl~~g~~--~~Lt 346 (448)
T PRK04792 296 KALTR---ITRHR-AIDTEPSWHPDGKSLIFTSE-----R-GGKPQIYRVNLASGKV--SRLT 346 (448)
T ss_pred CCeEE---CccCC-CCccceEECCCCCEEEEEEC-----C-CCCceEEEEECCCCCE--EEEe
Confidence 44333 22111 11222345678887877731 0 1235799999999998 8874
No 86
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=61.76 E-value=1.7e+02 Score=29.38 Aligned_cols=31 Identities=16% Similarity=0.149 Sum_probs=24.0
Q ss_pred CcEEECCeeEEEEeeCCCCCCcCEEEEEECCC--Ceeeee
Q 016891 203 DGTFADGHVHWLVTNNPEDYIENLIIAFNLKS--EEFHEV 240 (381)
Q Consensus 203 ~~v~~nG~lYwl~~~~~~~~~~~~i~~fD~~~--e~~~~i 240 (381)
++++.+|.+|.....+ .|.++|..+ +.|+.-
T Consensus 64 tPvv~~g~vyv~s~~g-------~v~AlDa~TGk~lW~~~ 96 (527)
T TIGR03075 64 QPLVVDGVMYVTTSYS-------RVYALDAKTGKELWKYD 96 (527)
T ss_pred CCEEECCEEEEECCCC-------cEEEEECCCCceeeEec
Confidence 6788999999876554 699999875 567653
No 87
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=61.52 E-value=1.3e+02 Score=27.63 Aligned_cols=111 Identities=13% Similarity=0.001 Sum_probs=60.0
Q ss_pred CeeEEEEeeCCCCCCcCEEEEEECCCCeeeeecCCCCCCCCCceeEEEEEECCeEEEEEecCCCceEEEEEEC--CceeE
Q 016891 209 GHVHWLVTNNPEDYIENLIIAFNLKSEEFHEVPLPHLENRNDVLVMFVGNFSGCLYFSCLCNYPQPVDIWVLM--GCWTK 286 (381)
Q Consensus 209 G~lYwl~~~~~~~~~~~~i~~fD~~~e~~~~i~~P~~~~~~~~~~~~L~~~~G~L~~~~~~~~~~~~~iW~l~--~~W~~ 286 (381)
+.|||....+. .|..+|+.+.+-+.++.|.... ...+..-+|.|..+... +.++..+ ..|..
T Consensus 37 ~~L~w~DI~~~------~i~r~~~~~g~~~~~~~p~~~~-----~~~~~d~~g~Lv~~~~g-----~~~~~~~~~~~~t~ 100 (307)
T COG3386 37 GALLWVDILGG------RIHRLDPETGKKRVFPSPGGFS-----SGALIDAGGRLIACEHG-----VRLLDPDTGGKITL 100 (307)
T ss_pred CEEEEEeCCCC------eEEEecCCcCceEEEECCCCcc-----cceeecCCCeEEEEccc-----cEEEeccCCceeEE
Confidence 57899887664 8999999988888888887652 23333344444443332 1222223 34444
Q ss_pred EEEecCC-CCCeeEEEEEEeCCCEEEEEecc-----cCCccccCCcEEEEEeCCCCce
Q 016891 287 TFSFPRS-VGDYVKALAYSKSGGKVLVDKFE-----YGEDEDINRWELFWYDLQNQGA 338 (381)
Q Consensus 287 ~~~i~~~-~~~~~~~~~~~~~g~~i~l~~~~-----~~~~~~~~~~~l~~yd~~t~~~ 338 (381)
...+... ......-..+.++|. +++.... +..+ .....++.||+.+...
T Consensus 101 ~~~~~~~~~~~r~ND~~v~pdG~-~wfgt~~~~~~~~~~~--~~~G~lyr~~p~g~~~ 155 (307)
T COG3386 101 LAEPEDGLPLNRPNDGVVDPDGR-IWFGDMGYFDLGKSEE--RPTGSLYRVDPDGGVV 155 (307)
T ss_pred eccccCCCCcCCCCceeEcCCCC-EEEeCCCccccCcccc--CCcceEEEEcCCCCEE
Confidence 4444311 112223344455666 7776433 1111 1123588999855555
No 88
>KOG3545 consensus Olfactomedin and related extracellular matrix glycoproteins [Extracellular structures]
Probab=61.37 E-value=1.2e+02 Score=26.91 Aligned_cols=140 Identities=15% Similarity=0.186 Sum_probs=75.5
Q ss_pred CcEEEcccCCCcceecCCCcEEECCeeEEEEeeCCCCCCcCEEEEEECCCCee-eeecCCCCCCCC-------CceeEEE
Q 016891 185 NSWRRIRVDFPYYILHGWDGTFADGHVHWLVTNNPEDYIENLIIAFNLKSEEF-HEVPLPHLENRN-------DVLVMFV 256 (381)
Q Consensus 185 ~~W~~~~~~~p~~~~~~~~~v~~nG~lYwl~~~~~~~~~~~~i~~fD~~~e~~-~~i~~P~~~~~~-------~~~~~~L 256 (381)
+.|...- ..|...... ..|+.||.+|....... .|+.||+.++.- ....+|.....+ ....+-+
T Consensus 56 ~~~~~~~-~lp~~~~gT-g~VVynGs~yynk~~t~------~ivky~l~~~~~~~~~~lp~a~y~~~~~y~~~g~sdiD~ 127 (249)
T KOG3545|consen 56 GRKAEKY-RLPYSWDGT-GHVVYNGSLYYNKAGTR------NIIKYDLETRTVAGSAALPYAGYHNPSPYYWGGHSDIDL 127 (249)
T ss_pred cCcceEE-eCCCCcccc-ceEEEcceEEeeccCCc------ceEEEEeecceeeeeeeccccccCCCcccccCCCccccc
Confidence 3454444 445433322 66899999999875543 799999998533 223455432211 1123567
Q ss_pred EEECCeEEEEEecC-CCceEEEEEEC-------CceeEEEEecCCCCCeeEEEEEEeCCCEEEEEecccCCccccCCcEE
Q 016891 257 GNFSGCLYFSCLCN-YPQPVDIWVLM-------GCWTKTFSFPRSVGDYVKALAYSKSGGKVLVDKFEYGEDEDINRWEL 328 (381)
Q Consensus 257 ~~~~G~L~~~~~~~-~~~~~~iW~l~-------~~W~~~~~i~~~~~~~~~~~~~~~~g~~i~l~~~~~~~~~~~~~~~l 328 (381)
++-..-|.++.... ....+.|-.|+ ..|.-...= ...+..+.+ .|. ++.... +. .....+
T Consensus 128 avDE~GLWviYat~~~~g~iv~skLdp~tl~~e~tW~T~~~k-~~~~~aF~i-----CGv-LY~v~S-~~----~~~~~i 195 (249)
T KOG3545|consen 128 AVDENGLWVIYATPENAGTIVLSKLDPETLEVERTWNTTLPK-RSAGNAFMI-----CGV-LYVVHS-YN----CTHTQI 195 (249)
T ss_pred eecccceeEEecccccCCcEEeeccCHHHhheeeeeccccCC-CCcCceEEE-----eee-eEEEec-cc----cCCceE
Confidence 77666677766554 23356666666 455422111 122222222 243 444411 00 112234
Q ss_pred -EEEeCCCCceeeeeEEEe
Q 016891 329 -FWYDLQNQGAAADQVTIH 346 (381)
Q Consensus 329 -~~yd~~t~~~~~~~v~~~ 346 (381)
+.||..+++- +.+.++
T Consensus 196 ~yaydt~~~~~--~~~~ip 212 (249)
T KOG3545|consen 196 SYAYDTTTGTQ--ERIDLP 212 (249)
T ss_pred EEEEEcCCCce--eccccc
Confidence 7999999999 888653
No 89
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=61.30 E-value=1.1e+02 Score=27.94 Aligned_cols=72 Identities=22% Similarity=0.248 Sum_probs=45.0
Q ss_pred EEEEEecCCCceEEEEEECC--ceeEEEEecCCCCCeeEEEEEEeCCCEEEEEecccCCccccCCcEEEEEeCCCCceee
Q 016891 263 LYFSCLCNYPQPVDIWVLMG--CWTKTFSFPRSVGDYVKALAYSKSGGKVLVDKFEYGEDEDINRWELFWYDLQNQGAAA 340 (381)
Q Consensus 263 L~~~~~~~~~~~~~iW~l~~--~W~~~~~i~~~~~~~~~~~~~~~~g~~i~l~~~~~~~~~~~~~~~l~~yd~~t~~~~~ 340 (381)
|..+..-++ .+++|.++. .-+-... .....-..-++..++|.+++.. ..++.+-.||+.+++.
T Consensus 42 ~~~A~SWD~--tVR~wevq~~g~~~~ka~--~~~~~PvL~v~WsddgskVf~g---------~~Dk~~k~wDL~S~Q~-- 106 (347)
T KOG0647|consen 42 LLAAGSWDG--TVRIWEVQNSGQLVPKAQ--QSHDGPVLDVCWSDDGSKVFSG---------GCDKQAKLWDLASGQV-- 106 (347)
T ss_pred eEEecccCC--ceEEEEEecCCcccchhh--hccCCCeEEEEEccCCceEEee---------ccCCceEEEEccCCCe--
Confidence 333444444 799999992 2221111 1111223445666788877777 4567799999999999
Q ss_pred eeEEEecCC
Q 016891 341 DQVTIHGVP 349 (381)
Q Consensus 341 ~~v~~~~~~ 349 (381)
..|..+..+
T Consensus 107 ~~v~~Hd~p 115 (347)
T KOG0647|consen 107 SQVAAHDAP 115 (347)
T ss_pred eeeeecccc
Confidence 999776654
No 90
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=61.24 E-value=1.5e+02 Score=28.10 Aligned_cols=94 Identities=13% Similarity=0.052 Sum_probs=52.9
Q ss_pred EEEEEECCCCe-eeeecCCCCCCCCCceeEEEEE-ECCeEEEEEecCCCceEEEEEECCceeEEEEecCCCCCeeEEEEE
Q 016891 226 LIIAFNLKSEE-FHEVPLPHLENRNDVLVMFVGN-FSGCLYFSCLCNYPQPVDIWVLMGCWTKTFSFPRSVGDYVKALAY 303 (381)
Q Consensus 226 ~i~~fD~~~e~-~~~i~~P~~~~~~~~~~~~L~~-~~G~L~~~~~~~~~~~~~iW~l~~~W~~~~~i~~~~~~~~~~~~~ 303 (381)
.|.++|..+.+ ...++.... ....+.. -+|+..++...++ .+.++-+. +...+.+|. .+....-+++
T Consensus 17 ~v~viD~~t~~~~~~i~~~~~------~h~~~~~s~Dgr~~yv~~rdg--~vsviD~~-~~~~v~~i~--~G~~~~~i~~ 85 (369)
T PF02239_consen 17 SVAVIDGATNKVVARIPTGGA------PHAGLKFSPDGRYLYVANRDG--TVSVIDLA-TGKVVATIK--VGGNPRGIAV 85 (369)
T ss_dssp EEEEEETTT-SEEEEEE-STT------EEEEEE-TT-SSEEEEEETTS--EEEEEETT-SSSEEEEEE---SSEEEEEEE
T ss_pred EEEEEECCCCeEEEEEcCCCC------ceeEEEecCCCCEEEEEcCCC--eEEEEECC-cccEEEEEe--cCCCcceEEE
Confidence 79999988754 355554322 1233333 3576444444433 67776666 222555565 3444566777
Q ss_pred EeCCCEEEEEecccCCccccCCcEEEEEeCCCCce
Q 016891 304 SKSGGKVLVDKFEYGEDEDINRWELFWYDLQNQGA 338 (381)
Q Consensus 304 ~~~g~~i~l~~~~~~~~~~~~~~~l~~yd~~t~~~ 338 (381)
.++|++++..+ .....+.++|.+|.+.
T Consensus 86 s~DG~~~~v~n--------~~~~~v~v~D~~tle~ 112 (369)
T PF02239_consen 86 SPDGKYVYVAN--------YEPGTVSVIDAETLEP 112 (369)
T ss_dssp --TTTEEEEEE--------EETTEEEEEETTT--E
T ss_pred cCCCCEEEEEe--------cCCCceeEeccccccc
Confidence 88999776664 4567899999999876
No 91
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=60.47 E-value=1.4e+02 Score=27.43 Aligned_cols=105 Identities=11% Similarity=0.107 Sum_probs=55.0
Q ss_pred EEEEEECC--CCeeeee----cCCCCCCCCCceeEEEE-EECCeEEEEEecCCCceEEEEEEC---CceeEEEEecCCCC
Q 016891 226 LIIAFNLK--SEEFHEV----PLPHLENRNDVLVMFVG-NFSGCLYFSCLCNYPQPVDIWVLM---GCWTKTFSFPRSVG 295 (381)
Q Consensus 226 ~i~~fD~~--~e~~~~i----~~P~~~~~~~~~~~~L~-~~~G~L~~~~~~~~~~~~~iW~l~---~~W~~~~~i~~~~~ 295 (381)
.|.+||+. +.+++.+ ..|..... ......+. .-+|+..++... ..+.+.+|.++ ..+..+..++. +
T Consensus 198 ~v~v~~~~~~~~~~~~~~~~~~~p~~~~~-~~~~~~i~~~pdg~~lyv~~~-~~~~I~v~~i~~~~~~~~~~~~~~~--~ 273 (330)
T PRK11028 198 SVDVWQLKDPHGEIECVQTLDMMPADFSD-TRWAADIHITPDGRHLYACDR-TASLISVFSVSEDGSVLSFEGHQPT--E 273 (330)
T ss_pred EEEEEEEeCCCCCEEEEEEEecCCCcCCC-CccceeEEECCCCCEEEEecC-CCCeEEEEEEeCCCCeEEEeEEEec--c
Confidence 78888876 3444433 23432111 01111122 235654444332 22389999886 45655555551 1
Q ss_pred CeeEEEEEEeCCCEEEEEecccCCccccCCcEEEEE--eCCCCceeeeeEE
Q 016891 296 DYVKALAYSKSGGKVLVDKFEYGEDEDINRWELFWY--DLQNQGAAADQVT 344 (381)
Q Consensus 296 ~~~~~~~~~~~g~~i~l~~~~~~~~~~~~~~~l~~y--d~~t~~~~~~~v~ 344 (381)
...+-+.+.++|+.|+..+ .....+.+| |.+++.+ +.++
T Consensus 274 ~~p~~~~~~~dg~~l~va~--------~~~~~v~v~~~~~~~g~l--~~~~ 314 (330)
T PRK11028 274 TQPRGFNIDHSGKYLIAAG--------QKSHHISVYEIDGETGLL--TELG 314 (330)
T ss_pred ccCCceEECCCCCEEEEEE--------ccCCcEEEEEEcCCCCcE--EEcc
Confidence 2234467778898677663 223456666 5567778 6663
No 92
>cd01207 Ena-Vasp Enabled-VASP-type homology (EVH1) domain. Enabled-VASP-type homology (EVH1) domain. The EVH1 domain binds to other proteins at proline rich sequences. It is found in proteins involved in cytoskeletal reorganization such as Enabled and VASP. Ena-VASP type EVH1 domains specifically recognize FPPPP motifs in the focal adhesion proteins zyxin and vinculin, and the ActA surface protein of Listeria monocytogenes. It has a PH-like fold, despite having minimal sequence similarity to PH or PTB domains.
Probab=60.39 E-value=44 Score=25.59 Aligned_cols=43 Identities=9% Similarity=-0.008 Sum_probs=29.1
Q ss_pred CcEEEEccCCcceeeCCCCCCCCCCceEEEEEeEECCCCCEEEEEEE
Q 016891 119 NGIALWNPSTEEHLILPKFWGDLKDFMVVDGFGYDAVNDDYKVVRLV 165 (381)
Q Consensus 119 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~d~~~~~ykVv~~~ 165 (381)
..+++.||.|+.|..+-..+. ....+.+-+++..+.|+|+...
T Consensus 9 A~Vm~~d~~tk~W~P~~~~~~----~ls~V~~~~~~~~~~yrIvg~~ 51 (111)
T cd01207 9 ASVMVYDDSNKKWVPAGGGSQ----GFSRVQIYHHPRNNTFRVVGRK 51 (111)
T ss_pred EEeeEEcCCCCcEEcCCCCCC----CcceEEEEEcCCCCEEEEEEee
Confidence 357889999998655432111 2245566678888899998875
No 93
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=60.27 E-value=1.2e+02 Score=26.72 Aligned_cols=181 Identities=14% Similarity=0.088 Sum_probs=84.7
Q ss_pred CCCcEEEEccCCcceee-CCCCCCCCCCceEEEEEeEECCCCCEEEEEEEEEeecCccceEEEEEEcCCCcEEEcccCCC
Q 016891 117 DENGIALWNPSTEEHLI-LPKFWGDLKDFMVVDGFGYDAVNDDYKVVRLVQLVIGNVGYTEIAVYSLRTNSWRRIRVDFP 195 (381)
Q Consensus 117 ~~~~~~V~NP~T~~~~~-LP~~~~~~~~~~~~~~~~~d~~~~~ykVv~~~~~~~~~~~~~~~~vyss~t~~W~~~~~~~p 195 (381)
....+.++|+.+++... ++.... ...+.+++..+ +++.... ....+.+|+.+++.= +. .++
T Consensus 51 ~~~~v~~~d~~~~~~~~~~~~~~~-------~~~~~~~~~g~--~l~~~~~------~~~~l~~~d~~~~~~--~~-~~~ 112 (300)
T TIGR03866 51 DSDTIQVIDLATGEVIGTLPSGPD-------PELFALHPNGK--ILYIANE------DDNLVTVIDIETRKV--LA-EIP 112 (300)
T ss_pred CCCeEEEEECCCCcEEEeccCCCC-------ccEEEECCCCC--EEEEEcC------CCCeEEEEECCCCeE--Ee-Eee
Confidence 45678999999887654 332211 11234444432 2222211 114677788776431 11 111
Q ss_pred cceecCCCcEE--ECCeeEEEEeeCCCCCCcCEEEEEECCCCeeee-ecCCCCCCCCCceeEEEE-EECCeEEEEEecCC
Q 016891 196 YYILHGWDGTF--ADGHVHWLVTNNPEDYIENLIIAFNLKSEEFHE-VPLPHLENRNDVLVMFVG-NFSGCLYFSCLCNY 271 (381)
Q Consensus 196 ~~~~~~~~~v~--~nG~lYwl~~~~~~~~~~~~i~~fD~~~e~~~~-i~~P~~~~~~~~~~~~L~-~~~G~L~~~~~~~~ 271 (381)
.... ..++. -+|.+.+.+.... ..+..+|..+.+... +..+... ..+. .-+|+..++.....
T Consensus 113 ~~~~--~~~~~~~~dg~~l~~~~~~~-----~~~~~~d~~~~~~~~~~~~~~~~-------~~~~~s~dg~~l~~~~~~~ 178 (300)
T TIGR03866 113 VGVE--PEGMAVSPDGKIVVNTSETT-----NMAHFIDTKTYEIVDNVLVDQRP-------RFAEFTADGKELWVSSEIG 178 (300)
T ss_pred CCCC--cceEEECCCCCEEEEEecCC-----CeEEEEeCCCCeEEEEEEcCCCc-------cEEEECCCCCEEEEEcCCC
Confidence 1000 02222 2566555554321 145667877654422 2211111 1122 23565444443323
Q ss_pred CceEEEEEEC-CceeEEEEec-CC-C-C-CeeEEEEEEeCCCEEEEEecccCCccccCCcEEEEEeCCCCce
Q 016891 272 PQPVDIWVLM-GCWTKTFSFP-RS-V-G-DYVKALAYSKSGGKVLVDKFEYGEDEDINRWELFWYDLQNQGA 338 (381)
Q Consensus 272 ~~~~~iW~l~-~~W~~~~~i~-~~-~-~-~~~~~~~~~~~g~~i~l~~~~~~~~~~~~~~~l~~yd~~t~~~ 338 (381)
. .+.+|.++ .+........ .. . + ....-+.+.++|+.+++.. .....+.+||+++.+.
T Consensus 179 ~-~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~--------~~~~~i~v~d~~~~~~ 241 (300)
T TIGR03866 179 G-TVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVAL--------GPANRVAVVDAKTYEV 241 (300)
T ss_pred C-EEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEc--------CCCCeEEEEECCCCcE
Confidence 2 78999887 3322222221 10 0 1 1112355677888666652 2345699999988777
No 94
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=60.06 E-value=1.5e+02 Score=27.80 Aligned_cols=26 Identities=23% Similarity=0.299 Sum_probs=20.6
Q ss_pred CcEEECCeeEEEEeeCCCCCCcCEEEEEECCCC
Q 016891 203 DGTFADGHVHWLVTNNPEDYIENLIIAFNLKSE 235 (381)
Q Consensus 203 ~~v~~nG~lYwl~~~~~~~~~~~~i~~fD~~~e 235 (381)
.++..+|.+|.....+ .+.++|+.+.
T Consensus 236 ~p~~~~~~vy~~~~~g-------~l~a~d~~tG 261 (377)
T TIGR03300 236 DPVVDGGQVYAVSYQG-------RVAALDLRSG 261 (377)
T ss_pred ccEEECCEEEEEEcCC-------EEEEEECCCC
Confidence 5677899999877665 7999998764
No 95
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=59.97 E-value=13 Score=22.19 Aligned_cols=25 Identities=16% Similarity=0.143 Sum_probs=18.1
Q ss_pred CcEEECCeeEEEEeeCCCCCCcCEEEEEECCC
Q 016891 203 DGTFADGHVHWLVTNNPEDYIENLIIAFNLKS 234 (381)
Q Consensus 203 ~~v~~nG~lYwl~~~~~~~~~~~~i~~fD~~~ 234 (381)
..++.+|.+|..+.++ .+.+||.++
T Consensus 16 ~~~v~~g~vyv~~~dg-------~l~ald~~t 40 (40)
T PF13570_consen 16 SPAVAGGRVYVGTGDG-------NLYALDAAT 40 (40)
T ss_dssp --EECTSEEEEE-TTS-------EEEEEETT-
T ss_pred CCEEECCEEEEEcCCC-------EEEEEeCCC
Confidence 5678899999988766 899999864
No 96
>cd01206 Homer Homer type EVH1 domain. Homer type EVH1 domain. Homer is a synaptic scaffolding protein, involved in neuronal signaling. It contains an EVH1 domain, which binds to both neurotransmitter receptors, such as the metabotropic glutamate receptor (mGluR) and to other scaffolding proteins via PPXXF motifs, in order to target them to the synaptic junction. It has a PH-like fold, despite having minimal sequence similarity to PH or PTB domains.
Probab=58.57 E-value=30 Score=26.24 Aligned_cols=40 Identities=15% Similarity=0.254 Sum_probs=29.4
Q ss_pred CcEEEEccCCc-ceeeCCCCCCCCCCceEEEEEeEECCCCCEEEEEEE
Q 016891 119 NGIALWNPSTE-EHLILPKFWGDLKDFMVVDGFGYDAVNDDYKVVRLV 165 (381)
Q Consensus 119 ~~~~V~NP~T~-~~~~LP~~~~~~~~~~~~~~~~~d~~~~~ykVv~~~ 165 (381)
..++++||.|+ .|... .+ ....+.+-+|+..+.|+||.+.
T Consensus 11 A~V~~yd~~tKk~WvPs--~~-----~~~~V~~y~~~~~ntfRIi~~~ 51 (111)
T cd01206 11 AHVFQIDPKTKKNWIPA--SK-----HAVTVSYFYDSTRNVYRIISVG 51 (111)
T ss_pred eEEEEECCCCcceeEeC--CC-----CceeEEEEecCCCcEEEEEEec
Confidence 46899999987 66543 32 1246678889999999999874
No 97
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=57.13 E-value=1.5e+02 Score=26.85 Aligned_cols=211 Identities=16% Similarity=0.143 Sum_probs=111.8
Q ss_pred cCcEEEEee-CCCcEEEEccCCcceeeCCCCCCCCCCce------------E-EEEEeEECCCCCEEEEEEEEEeecCcc
Q 016891 108 CNGLIAFKN-DENGIALWNPSTEEHLILPKFWGDLKDFM------------V-VDGFGYDAVNDDYKVVRLVQLVIGNVG 173 (381)
Q Consensus 108 ~~GLl~~~~-~~~~~~V~NP~T~~~~~LP~~~~~~~~~~------------~-~~~~~~d~~~~~ykVv~~~~~~~~~~~ 173 (381)
-+|-+-+.. ....+-=.||.||+....|...-..+... . ....-+|+.+.+++=.-+.. .....
T Consensus 71 pdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~aI~R~dpkt~evt~f~lp~--~~a~~ 148 (353)
T COG4257 71 PDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGLAIGRLDPKTLEVTRFPLPL--EHADA 148 (353)
T ss_pred CCCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcceeEEecCcccceEEeeccc--ccCCC
Confidence 356554443 33445567999999999885543332210 0 01112233333333222211 11223
Q ss_pred ceEEEEEEcCCCcEEEcccC-----CCcc--e------ecCC-CcEEE--CCeeEEEEeeCCCCCCcCEEEEEECCCCee
Q 016891 174 YTEIAVYSLRTNSWRRIRVD-----FPYY--I------LHGW-DGTFA--DGHVHWLVTNNPEDYIENLIIAFNLKSEEF 237 (381)
Q Consensus 174 ~~~~~vyss~t~~W~~~~~~-----~p~~--~------~~~~-~~v~~--nG~lYwl~~~~~~~~~~~~i~~fD~~~e~~ 237 (381)
..+..||+...+-|-.-+.. -|.. + .... .++++ ||.+|+-...++ +|..+|+.+..-
T Consensus 149 nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpaPqG~gpyGi~atpdGsvwyaslagn------aiaridp~~~~a 222 (353)
T COG4257 149 NLETAVFDPWGNLWFTGQIGAYGRLDPARNVISVFPAPQGGGPYGICATPDGSVWYASLAGN------AIARIDPFAGHA 222 (353)
T ss_pred cccceeeCCCccEEEeeccccceecCcccCceeeeccCCCCCCcceEECCCCcEEEEecccc------ceEEcccccCCc
Confidence 37888999999999654310 0110 0 0111 56664 799999876664 899999999888
Q ss_pred eeecCCCCCCCCCceeEEEEEECCeEEEEEecCCCceEEEEEEC---CceeEEEEecCCCCCeeEEEEEEeCCCEEEEEe
Q 016891 238 HEVPLPHLENRNDVLVMFVGNFSGCLYFSCLCNYPQPVDIWVLM---GCWTKTFSFPRSVGDYVKALAYSKSGGKVLVDK 314 (381)
Q Consensus 238 ~~i~~P~~~~~~~~~~~~L~~~~G~L~~~~~~~~~~~~~iW~l~---~~W~~~~~i~~~~~~~~~~~~~~~~g~~i~l~~ 314 (381)
..++.|...... ....-....|++-....... . +...+ .+|.. +.++. .+-...-+.|...|. +.+.-
T Consensus 223 ev~p~P~~~~~g--sRriwsdpig~~wittwg~g--~--l~rfdPs~~sW~e-ypLPg-s~arpys~rVD~~gr-VW~se 293 (353)
T COG4257 223 EVVPQPNALKAG--SRRIWSDPIGRAWITTWGTG--S--LHRFDPSVTSWIE-YPLPG-SKARPYSMRVDRHGR-VWLSE 293 (353)
T ss_pred ceecCCCccccc--ccccccCccCcEEEeccCCc--e--eeEeCccccccee-eeCCC-CCCCcceeeeccCCc-EEeec
Confidence 888888653321 11111223455444432222 2 22333 56653 34441 111233445554454 66651
Q ss_pred cccCCccccCCcEEEEEeCCCCceeeeeEEE
Q 016891 315 FEYGEDEDINRWELFWYDLQNQGAAADQVTI 345 (381)
Q Consensus 315 ~~~~~~~~~~~~~l~~yd~~t~~~~~~~v~~ 345 (381)
.....|.-+|++|.++ ..+.+
T Consensus 294 --------a~agai~rfdpeta~f--tv~p~ 314 (353)
T COG4257 294 --------ADAGAIGRFDPETARF--TVLPI 314 (353)
T ss_pred --------cccCceeecCcccceE--EEecC
Confidence 3456799999999999 77744
No 98
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=56.31 E-value=1.2e+02 Score=30.32 Aligned_cols=108 Identities=17% Similarity=0.205 Sum_probs=57.2
Q ss_pred CeeEEEEeeCCCCCCcCEEEEEECCCCeeeeecCCCCCCCCCceeEEEEEECCeEEEEEecCCCceEEEEEEC-CceeEE
Q 016891 209 GHVHWLVTNNPEDYIENLIIAFNLKSEEFHEVPLPHLENRNDVLVMFVGNFSGCLYFSCLCNYPQPVDIWVLM-GCWTKT 287 (381)
Q Consensus 209 G~lYwl~~~~~~~~~~~~i~~fD~~~e~~~~i~~P~~~~~~~~~~~~L~~~~G~L~~~~~~~~~~~~~iW~l~-~~W~~~ 287 (381)
--||..+... .|..||++.++|- -|...+...-..+.+.+++|-|++. ..++ .++.|-.. .+=...
T Consensus 146 cDly~~gsg~-------evYRlNLEqGrfL---~P~~~~~~~lN~v~in~~hgLla~G-t~~g--~VEfwDpR~ksrv~~ 212 (703)
T KOG2321|consen 146 CDLYLVGSGS-------EVYRLNLEQGRFL---NPFETDSGELNVVSINEEHGLLACG-TEDG--VVEFWDPRDKSRVGT 212 (703)
T ss_pred ccEEEeecCc-------ceEEEEccccccc---cccccccccceeeeecCccceEEec-ccCc--eEEEecchhhhhhee
Confidence 4555554443 6899999999883 2222221112345555666654433 3233 78899877 222221
Q ss_pred EE----ecCCCC----CeeEEEEEEeCCCEEEEEecccCCccccCCcEEEEEeCCCCce
Q 016891 288 FS----FPRSVG----DYVKALAYSKSGGKVLVDKFEYGEDEDINRWELFWYDLQNQGA 338 (381)
Q Consensus 288 ~~----i~~~~~----~~~~~~~~~~~g~~i~l~~~~~~~~~~~~~~~l~~yd~~t~~~ 338 (381)
.. |+..++ .....+.+.++|- -+-++ +...++++||+++.+=
T Consensus 213 l~~~~~v~s~pg~~~~~svTal~F~d~gL-~~aVG--------ts~G~v~iyDLRa~~p 262 (703)
T KOG2321|consen 213 LDAASSVNSHPGGDAAPSVTALKFRDDGL-HVAVG--------TSTGSVLIYDLRASKP 262 (703)
T ss_pred eecccccCCCccccccCcceEEEecCCce-eEEee--------ccCCcEEEEEcccCCc
Confidence 22 221122 2234455554443 33332 5567899999999875
No 99
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=54.03 E-value=3.4e+02 Score=29.95 Aligned_cols=69 Identities=17% Similarity=0.122 Sum_probs=42.5
Q ss_pred ECCeEEEEEecCCCceEEEEEEC-CceeEEEEecC-C-------CC--CeeEEEEEEeCCCEEEEEecccCCccccCCcE
Q 016891 259 FSGCLYFSCLCNYPQPVDIWVLM-GCWTKTFSFPR-S-------VG--DYVKALAYSKSGGKVLVDKFEYGEDEDINRWE 327 (381)
Q Consensus 259 ~~G~L~~~~~~~~~~~~~iW~l~-~~W~~~~~i~~-~-------~~--~~~~~~~~~~~g~~i~l~~~~~~~~~~~~~~~ 327 (381)
.+|.|+++...+. ++.+|..+ .....+..... . .. ....-+++.++|. ||+.. ...+.
T Consensus 813 ~dG~LYVADs~N~--rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~-lyVaD--------t~Nn~ 881 (1057)
T PLN02919 813 KDGQIYVADSYNH--KIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGR-LFVAD--------TNNSL 881 (1057)
T ss_pred CCCcEEEEECCCC--EEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCC-EEEEE--------CCCCE
Confidence 4688888877655 78888776 33222221110 0 01 2334456667887 88873 45667
Q ss_pred EEEEeCCCCce
Q 016891 328 LFWYDLQNQGA 338 (381)
Q Consensus 328 l~~yd~~t~~~ 338 (381)
|.++|+++++.
T Consensus 882 Irvid~~~~~~ 892 (1057)
T PLN02919 882 IRYLDLNKGEA 892 (1057)
T ss_pred EEEEECCCCcc
Confidence 99999999875
No 100
>PRK00178 tolB translocation protein TolB; Provisional
Probab=53.82 E-value=2.1e+02 Score=27.48 Aligned_cols=187 Identities=13% Similarity=0.024 Sum_probs=94.9
Q ss_pred CCcEEEEccCCcceeeCCCCCCCCCCceEEEEEeEECCCCCEEEEEEEEEeecCccceEEEEEEcCCCcEEEcccCCCcc
Q 016891 118 ENGIALWNPSTEEHLILPKFWGDLKDFMVVDGFGYDAVNDDYKVVRLVQLVIGNVGYTEIAVYSLRTNSWRRIRVDFPYY 197 (381)
Q Consensus 118 ~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~d~~~~~ykVv~~~~~~~~~~~~~~~~vyss~t~~W~~~~~~~p~~ 197 (381)
...++++|..+++...|...+... . ...+.|. +++-++... ..+...+++++..++..+.+. ..+..
T Consensus 222 ~~~l~~~~l~~g~~~~l~~~~g~~----~--~~~~SpD-G~~la~~~~-----~~g~~~Iy~~d~~~~~~~~lt-~~~~~ 288 (430)
T PRK00178 222 RPRIFVQNLDTGRREQITNFEGLN----G--APAWSPD-GSKLAFVLS-----KDGNPEIYVMDLASRQLSRVT-NHPAI 288 (430)
T ss_pred CCEEEEEECCCCCEEEccCCCCCc----C--CeEECCC-CCEEEEEEc-----cCCCceEEEEECCCCCeEEcc-cCCCC
Confidence 357999999999888876443211 1 1222332 222222221 112257888899998888766 32211
Q ss_pred eecCCCcE-EECC-eeEEEEeeCCCCCCcCEEEEEECCCCeeeeecCCCCCCCCCceeEEEEEECC-eEEEEEecCCCce
Q 016891 198 ILHGWDGT-FADG-HVHWLVTNNPEDYIENLIIAFNLKSEEFHEVPLPHLENRNDVLVMFVGNFSG-CLYFSCLCNYPQP 274 (381)
Q Consensus 198 ~~~~~~~v-~~nG-~lYwl~~~~~~~~~~~~i~~fD~~~e~~~~i~~P~~~~~~~~~~~~L~~~~G-~L~~~~~~~~~~~ 274 (381)
. .... .-+| .+++...... ...|..+|+.+.+.+.+...... ...+... -+| .|++.....+ .
T Consensus 289 ~---~~~~~spDg~~i~f~s~~~g----~~~iy~~d~~~g~~~~lt~~~~~----~~~~~~S-pdg~~i~~~~~~~~--~ 354 (430)
T PRK00178 289 D---TEPFWGKDGRTLYFTSDRGG----KPQIYKVNVNGGRAERVTFVGNY----NARPRLS-ADGKTLVMVHRQDG--N 354 (430)
T ss_pred c---CCeEECCCCCEEEEEECCCC----CceEEEEECCCCCEEEeecCCCC----ccceEEC-CCCCEEEEEEccCC--c
Confidence 0 0111 1244 4666553321 12688889887777655322111 1122222 244 4444444333 4
Q ss_pred EEEEEEC---CceeEEEEecCCCCCeeEEEEEEeCCCEEEEEecccCCccccCCcEEEEEeCCCCceeeeeEE
Q 016891 275 VDIWVLM---GCWTKTFSFPRSVGDYVKALAYSKSGGKVLVDKFEYGEDEDINRWELFWYDLQNQGAAADQVT 344 (381)
Q Consensus 275 ~~iW~l~---~~W~~~~~i~~~~~~~~~~~~~~~~g~~i~l~~~~~~~~~~~~~~~l~~yd~~t~~~~~~~v~ 344 (381)
..||.++ .+...+..- +....| .+.++|..|++... ......++..+...+.- +.+.
T Consensus 355 ~~l~~~dl~tg~~~~lt~~----~~~~~p-~~spdg~~i~~~~~------~~g~~~l~~~~~~g~~~--~~l~ 414 (430)
T PRK00178 355 FHVAAQDLQRGSVRILTDT----SLDESP-SVAPNGTMLIYATR------QQGRGVLMLVSINGRVR--LPLP 414 (430)
T ss_pred eEEEEEECCCCCEEEccCC----CCCCCc-eECCCCCEEEEEEe------cCCceEEEEEECCCCce--EECc
Confidence 5676666 443332211 111233 46678887777731 01234688999987766 6664
No 101
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=53.15 E-value=3e+02 Score=29.13 Aligned_cols=68 Identities=19% Similarity=0.193 Sum_probs=42.3
Q ss_pred CCeEEEEEecCCCceEEEEEEC-----CceeEEEEecCCC-CCeeEEEEEEeCCCEEEEEecccCCccccCCcEEEEEeC
Q 016891 260 SGCLYFSCLCNYPQPVDIWVLM-----GCWTKTFSFPRSV-GDYVKALAYSKSGGKVLVDKFEYGEDEDINRWELFWYDL 333 (381)
Q Consensus 260 ~G~L~~~~~~~~~~~~~iW~l~-----~~W~~~~~i~~~~-~~~~~~~~~~~~g~~i~l~~~~~~~~~~~~~~~l~~yd~ 333 (381)
+|.+.++..+++ .+.||.++ ..|..+..-.... .....-.+.+++|+.+++. ..++.|.+|+.
T Consensus 149 ~~~fLAvss~dG--~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~---------~~d~~Vkvy~r 217 (933)
T KOG1274|consen 149 KGNFLAVSSCDG--KVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVP---------PVDNTVKVYSR 217 (933)
T ss_pred CCCEEEEEecCc--eEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEee---------ccCCeEEEEcc
Confidence 677777777777 78999999 4454433222111 1334445666776646666 35667888888
Q ss_pred CCCce
Q 016891 334 QNQGA 338 (381)
Q Consensus 334 ~t~~~ 338 (381)
++...
T Consensus 218 ~~we~ 222 (933)
T KOG1274|consen 218 KGWEL 222 (933)
T ss_pred CCcee
Confidence 87666
No 102
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=52.88 E-value=33 Score=19.09 Aligned_cols=24 Identities=25% Similarity=0.314 Sum_probs=17.5
Q ss_pred EEECCeeEEEEeeCCCCCCcCEEEEEECCCC
Q 016891 205 TFADGHVHWLVTNNPEDYIENLIIAFNLKSE 235 (381)
Q Consensus 205 v~~nG~lYwl~~~~~~~~~~~~i~~fD~~~e 235 (381)
+..+|.+|.-..++ .+.++|..+.
T Consensus 3 ~~~~~~v~~~~~~g-------~l~a~d~~~G 26 (33)
T smart00564 3 VLSDGTVYVGSTDG-------TLYALDAKTG 26 (33)
T ss_pred EEECCEEEEEcCCC-------EEEEEEcccC
Confidence 45577888766554 8999998764
No 103
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=52.76 E-value=30 Score=32.78 Aligned_cols=65 Identities=18% Similarity=0.261 Sum_probs=47.0
Q ss_pred CCeEEEEEecCCCceEEEEEEC----CceeEEEEecCCCCCeeEEEEEEeCCCEEEEEecccCCccccCCcEEEEEeCCC
Q 016891 260 SGCLYFSCLCNYPQPVDIWVLM----GCWTKTFSFPRSVGDYVKALAYSKSGGKVLVDKFEYGEDEDINRWELFWYDLQN 335 (381)
Q Consensus 260 ~G~L~~~~~~~~~~~~~iW~l~----~~W~~~~~i~~~~~~~~~~~~~~~~g~~i~l~~~~~~~~~~~~~~~l~~yd~~t 335 (381)
+|.-.+++..+. .+..|.++ +.|+-+.. ....-+++..||+++++. ..+.++..||.++
T Consensus 323 Dg~~~V~Gs~dr--~i~~wdlDgn~~~~W~gvr~------~~v~dlait~Dgk~vl~v---------~~d~~i~l~~~e~ 385 (519)
T KOG0293|consen 323 DGFRFVTGSPDR--TIIMWDLDGNILGNWEGVRD------PKVHDLAITYDGKYVLLV---------TVDKKIRLYNREA 385 (519)
T ss_pred CCceeEecCCCC--cEEEecCCcchhhccccccc------ceeEEEEEcCCCcEEEEE---------ecccceeeechhh
Confidence 555444444444 78999999 78886553 235667888899988888 5677899999999
Q ss_pred CceeeeeE
Q 016891 336 QGAAADQV 343 (381)
Q Consensus 336 ~~~~~~~v 343 (381)
+.- +.+
T Consensus 386 ~~d--r~l 391 (519)
T KOG0293|consen 386 RVD--RGL 391 (519)
T ss_pred hhh--hcc
Confidence 887 633
No 104
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=52.18 E-value=2.4e+02 Score=27.63 Aligned_cols=37 Identities=14% Similarity=0.346 Sum_probs=29.2
Q ss_pred eEEEEEEeCCCEEEEEecccCCccccCCcEEEEEeCCCCceeeeeEEEe
Q 016891 298 VKALAYSKSGGKVLVDKFEYGEDEDINRWELFWYDLQNQGAAADQVTIH 346 (381)
Q Consensus 298 ~~~~~~~~~g~~i~l~~~~~~~~~~~~~~~l~~yd~~t~~~~~~~v~~~ 346 (381)
+.+.-...+|++|++. ....++.||++|..+ +++.|.
T Consensus 269 YY~R~~nsDGkrIvFq----------~~GdIylydP~td~l--ekldI~ 305 (668)
T COG4946 269 YYPRNANSDGKRIVFQ----------NAGDIYLYDPETDSL--EKLDIG 305 (668)
T ss_pred ccccccCCCCcEEEEe----------cCCcEEEeCCCcCcc--eeeecC
Confidence 3444445589999999 455699999999999 999875
No 105
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=52.10 E-value=69 Score=29.92 Aligned_cols=65 Identities=22% Similarity=0.318 Sum_probs=42.5
Q ss_pred EEEEEecCCCceEEEEEEC-CceeEEEEecCCCCCeeEEEEEEeCCCEEEEEecccCCccccCCcEEEEEeCCCCceeee
Q 016891 263 LYFSCLCNYPQPVDIWVLM-GCWTKTFSFPRSVGDYVKALAYSKSGGKVLVDKFEYGEDEDINRWELFWYDLQNQGAAAD 341 (381)
Q Consensus 263 L~~~~~~~~~~~~~iW~l~-~~W~~~~~i~~~~~~~~~~~~~~~~g~~i~l~~~~~~~~~~~~~~~l~~yd~~t~~~~~~ 341 (381)
.+.....+. .|.+|.+. . .-+.++. ..+...+-+++.+.|++|+=+ .+++.+-+||+++++. .
T Consensus 306 ~l~s~SrDk--tIk~wdv~tg--~cL~tL~-ghdnwVr~~af~p~Gkyi~Sc---------aDDktlrvwdl~~~~c--m 369 (406)
T KOG0295|consen 306 VLGSGSRDK--TIKIWDVSTG--MCLFTLV-GHDNWVRGVAFSPGGKYILSC---------ADDKTLRVWDLKNLQC--M 369 (406)
T ss_pred EEEeecccc--eEEEEeccCC--eEEEEEe-cccceeeeeEEcCCCeEEEEE---------ecCCcEEEEEecccee--e
Confidence 344444444 79999888 3 1122222 012456777888889866666 4677899999999998 5
Q ss_pred eE
Q 016891 342 QV 343 (381)
Q Consensus 342 ~v 343 (381)
+.
T Consensus 370 k~ 371 (406)
T KOG0295|consen 370 KT 371 (406)
T ss_pred ec
Confidence 55
No 106
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=51.30 E-value=2.4e+02 Score=27.43 Aligned_cols=181 Identities=15% Similarity=0.146 Sum_probs=96.0
Q ss_pred ccCCcceeeCCCCCCCCCCceEEEEEeEECCCCCEEEEEEEEEeecCccceEEEEEEcCCCcEEE-cccCCCcceecCCC
Q 016891 125 NPSTEEHLILPKFWGDLKDFMVVDGFGYDAVNDDYKVVRLVQLVIGNVGYTEIAVYSLRTNSWRR-IRVDFPYYILHGWD 203 (381)
Q Consensus 125 NP~T~~~~~LP~~~~~~~~~~~~~~~~~d~~~~~ykVv~~~~~~~~~~~~~~~~vyss~t~~W~~-~~~~~p~~~~~~~~ 203 (381)
+|-++-|.+.--++. ........++.+.|... |.++..+. ..+++|++.+..=+. +. .+.-... .-
T Consensus 8 t~e~~~w~~~~~~~~-~ke~~~vssl~fsp~~P-~d~aVt~S--------~rvqly~~~~~~~~k~~s-rFk~~v~--s~ 74 (487)
T KOG0310|consen 8 TPEIRYWRQETFPPV-HKEHNSVSSLCFSPKHP-YDFAVTSS--------VRVQLYSSVTRSVRKTFS-RFKDVVY--SV 74 (487)
T ss_pred Cccchhhhhhccccc-ccccCcceeEecCCCCC-CceEEecc--------cEEEEEecchhhhhhhHH-hhcccee--EE
Confidence 455566665432221 11223445566665433 33333333 689999998754332 22 2211110 02
Q ss_pred cEEECCeeEEEEeeCCCCCCcCEEEEEECCCCee-eee---cCCCCCCCCCceeEEEEEECCeEEEEEecCCCceEEEEE
Q 016891 204 GTFADGHVHWLVTNNPEDYIENLIIAFNLKSEEF-HEV---PLPHLENRNDVLVMFVGNFSGCLYFSCLCNYPQPVDIWV 279 (381)
Q Consensus 204 ~v~~nG~lYwl~~~~~~~~~~~~i~~fD~~~e~~-~~i---~~P~~~~~~~~~~~~L~~~~G~L~~~~~~~~~~~~~iW~ 279 (381)
.+..+|.|-..+.... .|-+||..+... +.+ ..|.. ......-++++.+.+.++. ...+|.
T Consensus 75 ~fR~DG~LlaaGD~sG------~V~vfD~k~r~iLR~~~ah~apv~-------~~~f~~~d~t~l~s~sDd~--v~k~~d 139 (487)
T KOG0310|consen 75 DFRSDGRLLAAGDESG------HVKVFDMKSRVILRQLYAHQAPVH-------VTKFSPQDNTMLVSGSDDK--VVKYWD 139 (487)
T ss_pred EeecCCeEEEccCCcC------cEEEeccccHHHHHHHhhccCcee-------EEEecccCCeEEEecCCCc--eEEEEE
Confidence 2345699887765543 799999655221 212 22322 2233334555555555444 788999
Q ss_pred ECCceeEEEEecCCCCCeeEEEEEEeCCCEEEEEecccCCccccCCcEEEEEeCCCCceeeeeEEE
Q 016891 280 LMGCWTKTFSFPRSVGDYVKALAYSKSGGKVLVDKFEYGEDEDINRWELFWYDLQNQGAAADQVTI 345 (381)
Q Consensus 280 l~~~W~~~~~i~~~~~~~~~~~~~~~~g~~i~l~~~~~~~~~~~~~~~l~~yd~~t~~~~~~~v~~ 345 (381)
+...-. +..+.- -..+.+...+.+-.+-|++.+ ..+..+-.||.++..- +.+++
T Consensus 140 ~s~a~v-~~~l~~-htDYVR~g~~~~~~~hivvtG--------sYDg~vrl~DtR~~~~--~v~el 193 (487)
T KOG0310|consen 140 LSTAYV-QAELSG-HTDYVRCGDISPANDHIVVTG--------SYDGKVRLWDTRSLTS--RVVEL 193 (487)
T ss_pred cCCcEE-EEEecC-CcceeEeeccccCCCeEEEec--------CCCceEEEEEeccCCc--eeEEe
Confidence 992223 444441 114566666666444478874 3455799999999865 45544
No 107
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=50.34 E-value=1.6e+02 Score=25.15 Aligned_cols=134 Identities=13% Similarity=0.040 Sum_probs=67.4
Q ss_pred EEEEEEcCCC--cEEEcccCCCcceecCCCcEEECCeeEEEEeeCCCCCCcCEEEEEECCCC--eeeeecCCCCCCCCCc
Q 016891 176 EIAVYSLRTN--SWRRIRVDFPYYILHGWDGTFADGHVHWLVTNNPEDYIENLIIAFNLKSE--EFHEVPLPHLENRNDV 251 (381)
Q Consensus 176 ~~~vyss~t~--~W~~~~~~~p~~~~~~~~~v~~nG~lYwl~~~~~~~~~~~~i~~fD~~~e--~~~~i~~P~~~~~~~~ 251 (381)
.+..++..++ .|+.-- ..+..... ...+.-+|.+|.....+ .|.++|..+. .|+. .++.....
T Consensus 4 ~l~~~d~~tG~~~W~~~~-~~~~~~~~-~~~~~~~~~v~~~~~~~-------~l~~~d~~tG~~~W~~-~~~~~~~~--- 70 (238)
T PF13360_consen 4 TLSALDPRTGKELWSYDL-GPGIGGPV-ATAVPDGGRVYVASGDG-------NLYALDAKTGKVLWRF-DLPGPISG--- 70 (238)
T ss_dssp EEEEEETTTTEEEEEEEC-SSSCSSEE-ETEEEETTEEEEEETTS-------EEEEEETTTSEEEEEE-ECSSCGGS---
T ss_pred EEEEEECCCCCEEEEEEC-CCCCCCcc-ceEEEeCCEEEEEcCCC-------EEEEEECCCCCEEEEe-eccccccc---
Confidence 3567777665 587632 11100000 02445788888875443 8999998665 4443 33333211
Q ss_pred eeEEEEEECCeEEEEEecCCCceEEEEEEC---CceeEEEEecCCCCCeeEEEEEEeCCCEEEEEecccCCccccCCcEE
Q 016891 252 LVMFVGNFSGCLYFSCLCNYPQPVDIWVLM---GCWTKTFSFPRSVGDYVKALAYSKSGGKVLVDKFEYGEDEDINRWEL 328 (381)
Q Consensus 252 ~~~~L~~~~G~L~~~~~~~~~~~~~iW~l~---~~W~~~~~i~~~~~~~~~~~~~~~~g~~i~l~~~~~~~~~~~~~~~l 328 (381)
. ....+|.+++..... .+..+-++ ..|.......+... ........-.++.+++. .....+
T Consensus 71 -~--~~~~~~~v~v~~~~~---~l~~~d~~tG~~~W~~~~~~~~~~~-~~~~~~~~~~~~~~~~~---------~~~g~l 134 (238)
T PF13360_consen 71 -A--PVVDGGRVYVGTSDG---SLYALDAKTGKVLWSIYLTSSPPAG-VRSSSSPAVDGDRLYVG---------TSSGKL 134 (238)
T ss_dssp -G--EEEETTEEEEEETTS---EEEEEETTTSCEEEEEEE-SSCTCS-TB--SEEEEETTEEEEE---------ETCSEE
T ss_pred -e--eeeccccccccccee---eeEecccCCcceeeeeccccccccc-cccccCceEecCEEEEE---------eccCcE
Confidence 1 355667776666221 33333322 56773222211111 11111122236646666 446789
Q ss_pred EEEeCCCCce
Q 016891 329 FWYDLQNQGA 338 (381)
Q Consensus 329 ~~yd~~t~~~ 338 (381)
+.+|+++++.
T Consensus 135 ~~~d~~tG~~ 144 (238)
T PF13360_consen 135 VALDPKTGKL 144 (238)
T ss_dssp EEEETTTTEE
T ss_pred EEEecCCCcE
Confidence 9999998877
No 108
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=49.76 E-value=1.9e+02 Score=25.78 Aligned_cols=97 Identities=8% Similarity=0.054 Sum_probs=60.2
Q ss_pred EEEEEECCCCeeeeecCCCCCCCCCceeEEEEEE-CCeEEEEEecCCCceEEEEEEC-----CceeEEEEecCCCCCeeE
Q 016891 226 LIIAFNLKSEEFHEVPLPHLENRNDVLVMFVGNF-SGCLYFSCLCNYPQPVDIWVLM-----GCWTKTFSFPRSVGDYVK 299 (381)
Q Consensus 226 ~i~~fD~~~e~~~~i~~P~~~~~~~~~~~~L~~~-~G~L~~~~~~~~~~~~~iW~l~-----~~W~~~~~i~~~~~~~~~ 299 (381)
.|-+.|+.++.+.....|.... .--.|.+. +|+..++...++ ..-+|.|- ..-+.+.++.. -..+..
T Consensus 147 ~irvWDl~~~~c~~~liPe~~~----~i~sl~v~~dgsml~a~nnkG--~cyvW~l~~~~~~s~l~P~~k~~a-h~~~il 219 (311)
T KOG0315|consen 147 NIRVWDLGENSCTHELIPEDDT----SIQSLTVMPDGSMLAAANNKG--NCYVWRLLNHQTASELEPVHKFQA-HNGHIL 219 (311)
T ss_pred cEEEEEccCCccccccCCCCCc----ceeeEEEcCCCcEEEEecCCc--cEEEEEccCCCccccceEhhheec-ccceEE
Confidence 7999999999998888887653 23355554 676555555555 67899988 12222222221 112223
Q ss_pred EEEEEeCCCEEEEEecccCCccccCCcEEEEEeCCCC-ce
Q 016891 300 ALAYSKSGGKVLVDKFEYGEDEDINRWELFWYDLQNQ-GA 338 (381)
Q Consensus 300 ~~~~~~~g~~i~l~~~~~~~~~~~~~~~l~~yd~~t~-~~ 338 (381)
-.-+.++++.|.-+ ..+..+.+++.++- +.
T Consensus 220 ~C~lSPd~k~lat~---------ssdktv~iwn~~~~~kl 250 (311)
T KOG0315|consen 220 RCLLSPDVKYLATC---------SSDKTVKIWNTDDFFKL 250 (311)
T ss_pred EEEECCCCcEEEee---------cCCceEEEEecCCceee
Confidence 33446678755555 45667999999999 44
No 109
>PLN00181 protein SPA1-RELATED; Provisional
Probab=49.69 E-value=3.4e+02 Score=28.70 Aligned_cols=186 Identities=14% Similarity=0.102 Sum_probs=91.2
Q ss_pred EEEEeeCCCcEEEEccCCcceeeCCCCCCCCCCceEEEEEeEECCCCCEEEEEEEEEeecCccceEEEEEEcCCCc-EEE
Q 016891 111 LIAFKNDENGIALWNPSTEEHLILPKFWGDLKDFMVVDGFGYDAVNDDYKVVRLVQLVIGNVGYTEIAVYSLRTNS-WRR 189 (381)
Q Consensus 111 Ll~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~d~~~~~ykVv~~~~~~~~~~~~~~~~vyss~t~~-W~~ 189 (381)
.|.....+..+.|||..+++....-.. + ......+.+++..+.+-+.+- . ...+.+|+.+++. ...
T Consensus 547 ~las~~~Dg~v~lWd~~~~~~~~~~~~---H--~~~V~~l~~~p~~~~~L~Sgs----~----Dg~v~iWd~~~~~~~~~ 613 (793)
T PLN00181 547 QVASSNFEGVVQVWDVARSQLVTEMKE---H--EKRVWSIDYSSADPTLLASGS----D----DGSVKLWSINQGVSIGT 613 (793)
T ss_pred EEEEEeCCCeEEEEECCCCeEEEEecC---C--CCCEEEEEEcCCCCCEEEEEc----C----CCEEEEEECCCCcEEEE
Confidence 344344567788888877654331111 1 123445666654443322111 1 1467788877642 222
Q ss_pred cccCCCcceecCCCcEEE---CCeeEEEEeeCCCCCCcCEEEEEECCCCeeeeecCCCCCCCCCceeEEEEEECCeEEEE
Q 016891 190 IRVDFPYYILHGWDGTFA---DGHVHWLVTNNPEDYIENLIIAFNLKSEEFHEVPLPHLENRNDVLVMFVGNFSGCLYFS 266 (381)
Q Consensus 190 ~~~~~p~~~~~~~~~v~~---nG~lYwl~~~~~~~~~~~~i~~fD~~~e~~~~i~~P~~~~~~~~~~~~L~~~~G~L~~~ 266 (381)
+. . .... ..+.+ +|.....+..+. .|..+|+.+..-....+.. +......+.-.+|...+.
T Consensus 614 ~~-~-~~~v----~~v~~~~~~g~~latgs~dg------~I~iwD~~~~~~~~~~~~~----h~~~V~~v~f~~~~~lvs 677 (793)
T PLN00181 614 IK-T-KANI----CCVQFPSESGRSLAFGSADH------KVYYYDLRNPKLPLCTMIG----HSKTVSYVRFVDSSTLVS 677 (793)
T ss_pred Ee-c-CCCe----EEEEEeCCCCCEEEEEeCCC------eEEEEECCCCCccceEecC----CCCCEEEEEEeCCCEEEE
Confidence 21 1 0000 12222 355444444332 7899998764311111111 111122333346665555
Q ss_pred EecCCCceEEEEEEC-----CceeEEEEecCCCCCeeEEEEEEeCCCEEEEEecccCCccccCCcEEEEEeCCCCc
Q 016891 267 CLCNYPQPVDIWVLM-----GCWTKTFSFPRSVGDYVKALAYSKSGGKVLVDKFEYGEDEDINRWELFWYDLQNQG 337 (381)
Q Consensus 267 ~~~~~~~~~~iW~l~-----~~W~~~~~i~~~~~~~~~~~~~~~~g~~i~l~~~~~~~~~~~~~~~l~~yd~~t~~ 337 (381)
...++ .+.||.+. ..|..+..+.. .......+++.+++. +++.+ .....+.+||..+..
T Consensus 678 ~s~D~--~ikiWd~~~~~~~~~~~~l~~~~g-h~~~i~~v~~s~~~~-~lasg--------s~D~~v~iw~~~~~~ 741 (793)
T PLN00181 678 SSTDN--TLKLWDLSMSISGINETPLHSFMG-HTNVKNFVGLSVSDG-YIATG--------SETNEVFVYHKAFPM 741 (793)
T ss_pred EECCC--EEEEEeCCCCccccCCcceEEEcC-CCCCeeEEEEcCCCC-EEEEE--------eCCCEEEEEECCCCC
Confidence 55544 79999987 24665555541 112344567777777 44442 345679999977653
No 110
>PRK04792 tolB translocation protein TolB; Provisional
Probab=48.08 E-value=2.7e+02 Score=27.10 Aligned_cols=99 Identities=11% Similarity=0.123 Sum_probs=54.1
Q ss_pred EEEEEECCCCeeeeecCCCCCCCCCceeEEEEEECCe-EEEEEecCCCceEEEEEEC---CceeEEEEecCCCCCeeEEE
Q 016891 226 LIIAFNLKSEEFHEVPLPHLENRNDVLVMFVGNFSGC-LYFSCLCNYPQPVDIWVLM---GCWTKTFSFPRSVGDYVKAL 301 (381)
Q Consensus 226 ~i~~fD~~~e~~~~i~~P~~~~~~~~~~~~L~~~~G~-L~~~~~~~~~~~~~iW~l~---~~W~~~~~i~~~~~~~~~~~ 301 (381)
.|..+|+.+.+.+.+....... ..+.. .-+|+ |++.....+ ..+||.++ .++.++. .. +......
T Consensus 287 ~Iy~~dl~tg~~~~lt~~~~~~----~~p~w-SpDG~~I~f~s~~~g--~~~Iy~~dl~~g~~~~Lt-~~---g~~~~~~ 355 (448)
T PRK04792 287 EIYVVDIATKALTRITRHRAID----TEPSW-HPDGKSLIFTSERGG--KPQIYRVNLASGKVSRLT-FE---GEQNLGG 355 (448)
T ss_pred EEEEEECCCCCeEECccCCCCc----cceEE-CCCCCEEEEEECCCC--CceEEEEECCCCCEEEEe-cC---CCCCcCe
Confidence 6888999888776552211111 11221 23554 444433323 46788777 5555442 11 1111123
Q ss_pred EEEeCCCEEEEEecccCCccccCCcEEEEEeCCCCceeeeeE
Q 016891 302 AYSKSGGKVLVDKFEYGEDEDINRWELFWYDLQNQGAAADQV 343 (381)
Q Consensus 302 ~~~~~g~~i~l~~~~~~~~~~~~~~~l~~yd~~t~~~~~~~v 343 (381)
.+.++|+.|++... ......++.+|+++++. +.+
T Consensus 356 ~~SpDG~~l~~~~~------~~g~~~I~~~dl~~g~~--~~l 389 (448)
T PRK04792 356 SITPDGRSMIMVNR------TNGKFNIARQDLETGAM--QVL 389 (448)
T ss_pred eECCCCCEEEEEEe------cCCceEEEEEECCCCCe--EEc
Confidence 55678887877731 01234699999999998 776
No 111
>PF13859 BNR_3: BNR repeat-like domain; PDB: 3B69_A.
Probab=47.33 E-value=1.8e+02 Score=26.88 Aligned_cols=84 Identities=13% Similarity=0.181 Sum_probs=47.3
Q ss_pred CcEEE-CCeeEEEEeeCCCCCC-cCEEEEEECC-CCeeeee-cCCCCCCCCCceeEEEEEE-CCeEEEEEecCCCceEEE
Q 016891 203 DGTFA-DGHVHWLVTNNPEDYI-ENLIIAFNLK-SEEFHEV-PLPHLENRNDVLVMFVGNF-SGCLYFSCLCNYPQPVDI 277 (381)
Q Consensus 203 ~~v~~-nG~lYwl~~~~~~~~~-~~~i~~fD~~-~e~~~~i-~~P~~~~~~~~~~~~L~~~-~G~L~~~~~~~~~~~~~i 277 (381)
++|.. ||.|-+-......... ...++.|-.. .++|..- -.|+.. ...+.++|- +|+|.|+..++.. +-.|
T Consensus 125 SGV~m~dGTLVFPv~a~~~~~~~~~SlIiYS~d~g~~W~lskg~s~~g----C~~psv~EWe~gkLlM~~~c~~g-~rrV 199 (310)
T PF13859_consen 125 SGVVMEDGTLVFPVQATKKNGDGTVSLIIYSTDDGKTWKLSKGMSPAG----CSDPSVVEWEDGKLLMMTACDDG-RRRV 199 (310)
T ss_dssp E-EE-TTS-EEEEEEEEETT---EEEEEEEESSTTSS-EE-S----TT-----EEEEEEEE-TTEEEEEEE-TTS----E
T ss_pred CceEEcCCCEEEEEeeeccCccceEEEEEEECCCccceEeccccCCCC----cceEEEEeccCCeeEEEEecccc-eEEE
Confidence 67776 8888887644322223 3578888776 6888765 333322 368899999 8999999999875 5566
Q ss_pred EEEC---CceeE-EEEec
Q 016891 278 WVLM---GCWTK-TFSFP 291 (381)
Q Consensus 278 W~l~---~~W~~-~~~i~ 291 (381)
+.=. .+|.. .-+++
T Consensus 200 YeS~DmG~tWtea~gtls 217 (310)
T PF13859_consen 200 YESGDMGTTWTEALGTLS 217 (310)
T ss_dssp EEESSTTSS-EE-TTTTT
T ss_pred EEEcccceehhhccCccc
Confidence 6654 78986 33444
No 112
>PF13013 F-box-like_2: F-box-like domain
Probab=47.07 E-value=4.3 Score=30.96 Aligned_cols=28 Identities=18% Similarity=0.159 Sum_probs=22.5
Q ss_pred CCCcHHHHHHHHccCCccceeEEEeehh
Q 016891 2 AGLPTDINIDILSRLSVKCLLRFKCVSK 29 (381)
Q Consensus 2 ~~LPdDll~eIL~rLP~~~l~r~r~VcK 29 (381)
.+||+||++.|+..-...++...-..|+
T Consensus 23 ~DLP~ELl~~I~~~C~~~~l~~l~~~~~ 50 (109)
T PF13013_consen 23 LDLPWELLQLIFDYCNDPILLALSRTCR 50 (109)
T ss_pred hhChHHHHHHHHhhcCcHHHHHHHHHHH
Confidence 4799999999999999887765555555
No 113
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=46.95 E-value=3e+02 Score=27.20 Aligned_cols=22 Identities=23% Similarity=0.297 Sum_probs=15.7
Q ss_pred CEEEEEECCCCeeeeecCCCCC
Q 016891 225 NLIIAFNLKSEEFHEVPLPHLE 246 (381)
Q Consensus 225 ~~i~~fD~~~e~~~~i~~P~~~ 246 (381)
..|...|-.=.+.+.+++|...
T Consensus 308 Rki~~Wd~~y~k~r~~elPe~~ 329 (626)
T KOG2106|consen 308 RKIILWDDNYRKLRETELPEQF 329 (626)
T ss_pred ceEEeccccccccccccCchhc
Confidence 4888998555667777888643
No 114
>KOG2502 consensus Tub family proteins [General function prediction only]
Probab=46.03 E-value=13 Score=34.27 Aligned_cols=36 Identities=19% Similarity=0.323 Sum_probs=29.8
Q ss_pred CCCcHHHHHHHHccCCc--------cceeEEEeehhhhhhhccC
Q 016891 2 AGLPTDINIDILSRLSV--------KCLLRFKCVSKSFCSLIDS 37 (381)
Q Consensus 2 ~~LPdDll~eIL~rLP~--------~~l~r~r~VcK~W~~li~~ 37 (381)
+.||.++|.+|+.|... ++++.++.||+.|+.+..+
T Consensus 46 ~~l~~~~L~d~~~r~eese~~wp~r~~vvs~~~~~~~~r~~~~~ 89 (355)
T KOG2502|consen 46 AALPPELLSDVLKRDEESEDTWPSRRNVVSCAGVCDKWREISKE 89 (355)
T ss_pred hcCCHhHHHHHhhhccccccccccccccccccchhhhhhhhccc
Confidence 47999999999999862 3688999999999987643
No 115
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=46.02 E-value=3e+02 Score=26.99 Aligned_cols=141 Identities=16% Similarity=0.153 Sum_probs=79.0
Q ss_pred eEEEEEEcCCCcEEEcccCCCcceecC-----------CCcEEECCeeEEEEeeCCCCCCcCEEEEEECCCCeeeeecCC
Q 016891 175 TEIAVYSLRTNSWRRIRVDFPYYILHG-----------WDGTFADGHVHWLVTNNPEDYIENLIIAFNLKSEEFHEVPLP 243 (381)
Q Consensus 175 ~~~~vyss~t~~W~~~~~~~p~~~~~~-----------~~~v~~nG~lYwl~~~~~~~~~~~~i~~fD~~~e~~~~i~~P 243 (381)
-..++|+++++.=+.++..+|...... ..-..++|..+.+...+ ....++....-- ++++
T Consensus 287 GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSRG-------kaFi~~~~~~~~--iqv~ 357 (668)
T COG4946 287 GDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSRG-------KAFIMRPWDGYS--IQVG 357 (668)
T ss_pred CcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEecC-------cEEEECCCCCee--EEcC
Confidence 357888888888887775545431110 02345788888887666 344444432221 2333
Q ss_pred CCCCCCCceeEEEEEECCeEEEEEecCCCceEEEEEECCceeEEEEecCCCCCeeEEEEEEeCCCEEEEEecccCCcccc
Q 016891 244 HLENRNDVLVMFVGNFSGCLYFSCLCNYPQPVDIWVLMGCWTKTFSFPRSVGDYVKALAYSKSGGKVLVDKFEYGEDEDI 323 (381)
Q Consensus 244 ~~~~~~~~~~~~L~~~~G~L~~~~~~~~~~~~~iW~l~~~W~~~~~i~~~~~~~~~~~~~~~~g~~i~l~~~~~~~~~~~ 323 (381)
....- ...++......+. +...++ ..+.|+-.+.. ++.++...++ ....+++.++|+++++. -
T Consensus 358 ~~~~V---rY~r~~~~~e~~v-igt~dg-D~l~iyd~~~~--e~kr~e~~lg-~I~av~vs~dGK~~vva---------N 420 (668)
T COG4946 358 KKGGV---RYRRIQVDPEGDV-IGTNDG-DKLGIYDKDGG--EVKRIEKDLG-NIEAVKVSPDGKKVVVA---------N 420 (668)
T ss_pred CCCce---EEEEEccCCcceE-EeccCC-ceEEEEecCCc--eEEEeeCCcc-ceEEEEEcCCCcEEEEE---------c
Confidence 22211 1223333323222 222222 26777766622 2334443343 34556778899978887 3
Q ss_pred CCcEEEEEeCCCCceeeeeE
Q 016891 324 NRWELFWYDLQNQGAAADQV 343 (381)
Q Consensus 324 ~~~~l~~yd~~t~~~~~~~v 343 (381)
+..++.++|++++.. +.+
T Consensus 421 dr~el~vididngnv--~~i 438 (668)
T COG4946 421 DRFELWVIDIDNGNV--RLI 438 (668)
T ss_pred CceEEEEEEecCCCe--eEe
Confidence 567899999999999 888
No 116
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=45.79 E-value=2.2e+02 Score=25.33 Aligned_cols=147 Identities=13% Similarity=0.055 Sum_probs=0.0
Q ss_pred EEEEeeCCCCCCcCEEEEEECCCCeeeeecCCCCCCCCCceeEEEEEECCeEEEEEecCCCceEEEEEEC---------C
Q 016891 212 HWLVTNNPEDYIENLIIAFNLKSEEFHEVPLPHLENRNDVLVMFVGNFSGCLYFSCLCNYPQPVDIWVLM---------G 282 (381)
Q Consensus 212 Ywl~~~~~~~~~~~~i~~fD~~~e~~~~i~~P~~~~~~~~~~~~L~~~~G~L~~~~~~~~~~~~~iW~l~---------~ 282 (381)
|...+...+....+.+-+.|-.+. ...=..|..........++-....+.+.+.+.. + .+.-|.-. .
T Consensus 24 ~l~agn~~G~iav~sl~sl~s~sa-~~~gk~~iv~eqahdgpiy~~~f~d~~Lls~gd-G--~V~gw~W~E~~es~~~K~ 99 (325)
T KOG0649|consen 24 YLFAGNLFGDIAVLSLKSLDSGSA-EPPGKLKIVPEQAHDGPIYYLAFHDDFLLSGGD-G--LVYGWEWNEEEESLATKR 99 (325)
T ss_pred EEEEecCCCeEEEEEehhhhcccc-CCCCCcceeeccccCCCeeeeeeehhheeeccC-c--eEEEeeehhhhhhccchh
Q ss_pred ceeEEEEec-CCCC-CeeEEEEEEeCCCEEEEEecccCCccccCCcEEEEEeCCCCceeeeeEEEecCCCCceeEEEEee
Q 016891 283 CWTKTFSFP-RSVG-DYVKALAYSKSGGKVLVDKFEYGEDEDINRWELFWYDLQNQGAAADQVTIHGVPQGCRDTIVCVD 360 (381)
Q Consensus 283 ~W~~~~~i~-~~~~-~~~~~~~~~~~g~~i~l~~~~~~~~~~~~~~~l~~yd~~t~~~~~~~v~~~~~~~~~~~~~~y~~ 360 (381)
.|+.+-.+. .... .....+.+.+..+-|++. ..+..++..|+|++++ +++ +.+..+| ....+-.+
T Consensus 100 lwe~~~P~~~~~~evPeINam~ldP~enSi~~A---------gGD~~~y~~dlE~G~i--~r~-~rGHtDY-vH~vv~R~ 166 (325)
T KOG0649|consen 100 LWEVKIPMQVDAVEVPEINAMWLDPSENSILFA---------GGDGVIYQVDLEDGRI--QRE-YRGHTDY-VHSVVGRN 166 (325)
T ss_pred hhhhcCccccCcccCCccceeEeccCCCcEEEe---------cCCeEEEEEEecCCEE--EEE-EcCCcce-eeeeeecc
Q ss_pred ceecCcCCCCCCcCC
Q 016891 361 SLVSLAACAGRGVAG 375 (381)
Q Consensus 361 sl~~~~~~~~~~~~~ 375 (381)
+--.+-++..-|.++
T Consensus 167 ~~~qilsG~EDGtvR 181 (325)
T KOG0649|consen 167 ANGQILSGAEDGTVR 181 (325)
T ss_pred cCcceeecCCCccEE
No 117
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=45.58 E-value=82 Score=30.83 Aligned_cols=77 Identities=18% Similarity=0.207 Sum_probs=46.8
Q ss_pred EEEEEECCCCeeeee-cCCCCCCCCCceeEEEEE-ECCeEEEEEecCCCceEEEEEECCceeEEEEecCCCCCeeEEEEE
Q 016891 226 LIIAFNLKSEEFHEV-PLPHLENRNDVLVMFVGN-FSGCLYFSCLCNYPQPVDIWVLMGCWTKTFSFPRSVGDYVKALAY 303 (381)
Q Consensus 226 ~i~~fD~~~e~~~~i-~~P~~~~~~~~~~~~L~~-~~G~L~~~~~~~~~~~~~iW~l~~~W~~~~~i~~~~~~~~~~~~~ 303 (381)
.+-..|+.+.+-+.- +++...- ....|.. .+-+||+.+..++ .|.||.|.++ +++..+.- .......+.+
T Consensus 488 tlsiWDLAapTprikaeltssap----aCyALa~spDakvcFsccsdG--nI~vwDLhnq-~~VrqfqG-htDGascIdi 559 (705)
T KOG0639|consen 488 TLSIWDLAAPTPRIKAELTSSAP----ACYALAISPDAKVCFSCCSDG--NIAVWDLHNQ-TLVRQFQG-HTDGASCIDI 559 (705)
T ss_pred eeeeeeccCCCcchhhhcCCcch----hhhhhhcCCccceeeeeccCC--cEEEEEcccc-eeeecccC-CCCCceeEEe
Confidence 788899998877655 5554321 1223443 4789999999888 7999999833 23333330 0133455555
Q ss_pred EeCCCEE
Q 016891 304 SKSGGKV 310 (381)
Q Consensus 304 ~~~g~~i 310 (381)
.++|.+|
T Consensus 560 s~dGtkl 566 (705)
T KOG0639|consen 560 SKDGTKL 566 (705)
T ss_pred cCCCcee
Confidence 6566633
No 118
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=45.07 E-value=97 Score=29.55 Aligned_cols=89 Identities=10% Similarity=0.138 Sum_probs=51.0
Q ss_pred ECCeEEEEEecCCCceEEEEEECCceeEEEEec-CCCCCeeEEEEEEeCCCEEEEEecccCCccccCCcEEEEEeCCCCc
Q 016891 259 FSGCLYFSCLCNYPQPVDIWVLMGCWTKTFSFP-RSVGDYVKALAYSKSGGKVLVDKFEYGEDEDINRWELFWYDLQNQG 337 (381)
Q Consensus 259 ~~G~L~~~~~~~~~~~~~iW~l~~~W~~~~~i~-~~~~~~~~~~~~~~~g~~i~l~~~~~~~~~~~~~~~l~~yd~~t~~ 337 (381)
-+|++.++..... .+.+|-++ +|..+.+-. .--+...---|+....+..+..+ ..+.+++++|.++++
T Consensus 405 ~d~k~~LvnL~~q--ei~LWDl~-e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSG--------SED~kvyIWhr~sgk 473 (519)
T KOG0293|consen 405 KDGKLALVNLQDQ--EIHLWDLE-ENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASG--------SEDSKVYIWHRISGK 473 (519)
T ss_pred CCCcEEEEEcccC--eeEEeecc-hhhHHHHhhcccccceEEEeccCCCCcceEEec--------CCCceEEEEEccCCc
Confidence 3689999998877 79999998 555433322 10111222234444343344442 245679999999999
Q ss_pred eeeeeEEEecCCCCceeEEEEeece
Q 016891 338 AAADQVTIHGVPQGCRDTIVCVDSL 362 (381)
Q Consensus 338 ~~~~~v~~~~~~~~~~~~~~y~~sl 362 (381)
. -.+ ..|..- +..+..+.|.-
T Consensus 474 l--l~~-LsGHs~-~vNcVswNP~~ 494 (519)
T KOG0293|consen 474 L--LAV-LSGHSK-TVNCVSWNPAD 494 (519)
T ss_pred e--eEe-ecCCcc-eeeEEecCCCC
Confidence 8 333 344322 25566665544
No 119
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=43.94 E-value=2.5e+02 Score=25.39 Aligned_cols=74 Identities=18% Similarity=0.277 Sum_probs=49.5
Q ss_pred CeEEEEEecCCCceEEEEEEC--CceeEEEEecCCCCCeeEEEEEEeCCCEEEEEecccCCccccCCcEEEEEeCCCCce
Q 016891 261 GCLYFSCLCNYPQPVDIWVLM--GCWTKTFSFPRSVGDYVKALAYSKSGGKVLVDKFEYGEDEDINRWELFWYDLQNQGA 338 (381)
Q Consensus 261 G~L~~~~~~~~~~~~~iW~l~--~~W~~~~~i~~~~~~~~~~~~~~~~g~~i~l~~~~~~~~~~~~~~~l~~yd~~t~~~ 338 (381)
|.+.+-+..+. .++||.+. ++|+-+..++.....-.+-++..+.|.++.-.+ + +-.+.+|.-+.+.+
T Consensus 27 g~ilAscg~Dk--~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aS--------F-D~t~~Iw~k~~~ef 95 (312)
T KOG0645|consen 27 GVILASCGTDK--AVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASAS--------F-DATVVIWKKEDGEF 95 (312)
T ss_pred ceEEEeecCCc--eEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEee--------c-cceEEEeecCCCce
Confidence 44444444444 89999999 799999888753335667778778888333332 2 33477788888888
Q ss_pred eeeeEEEec
Q 016891 339 AADQVTIHG 347 (381)
Q Consensus 339 ~~~~v~~~~ 347 (381)
+.+...+
T Consensus 96 --ecv~~lE 102 (312)
T KOG0645|consen 96 --ECVATLE 102 (312)
T ss_pred --eEEeeee
Confidence 7775433
No 120
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=43.11 E-value=2.7e+02 Score=25.71 Aligned_cols=127 Identities=10% Similarity=0.117 Sum_probs=67.5
Q ss_pred EEEEEECCCCeeee-ecCCCCCCCCCceeEEEEEECCeEEEEEecCCCceEEEEEEC--------CceeEEEEecCCC-C
Q 016891 226 LIIAFNLKSEEFHE-VPLPHLENRNDVLVMFVGNFSGCLYFSCLCNYPQPVDIWVLM--------GCWTKTFSFPRSV-G 295 (381)
Q Consensus 226 ~i~~fD~~~e~~~~-i~~P~~~~~~~~~~~~L~~~~G~L~~~~~~~~~~~~~iW~l~--------~~W~~~~~i~~~~-~ 295 (381)
.+++||..+-+... .+.-. .. .-.-.....+|+..++...+. .++.+..+ .+=+..+++.... .
T Consensus 176 kllv~~a~t~e~vas~rits-~~---~IK~I~~s~~g~~liiNtsDR--vIR~ye~~di~~~~r~~e~e~~~K~qDvVNk 249 (405)
T KOG1273|consen 176 KLLVYDAETLECVASFRITS-VQ---AIKQIIVSRKGRFLIINTSDR--VIRTYEISDIDDEGRDGEVEPEHKLQDVVNK 249 (405)
T ss_pred eEEEEecchheeeeeeeech-he---eeeEEEEeccCcEEEEecCCc--eEEEEehhhhcccCccCCcChhHHHHHHHhh
Confidence 78888887642211 11111 10 111123334677777776665 56666554 1111111111000 1
Q ss_pred CeeEEEEEEeCCCEEEEEecccCCccccCCcEEEEEeCCCCceeeeeEEEecCC-CC--ceeEEEEeeceecCcCCC
Q 016891 296 DYVKALAYSKSGGKVLVDKFEYGEDEDINRWELFWYDLQNQGAAADQVTIHGVP-QG--CRDTIVCVDSLVSLAACA 369 (381)
Q Consensus 296 ~~~~~~~~~~~g~~i~l~~~~~~~~~~~~~~~l~~yd~~t~~~~~~~v~~~~~~-~~--~~~~~~y~~sl~~~~~~~ 369 (381)
.-+.-+++..+|++|+-.+ ...+.++++...++.+ -+| ..|.. +- ....+++.+.++++.++.
T Consensus 250 ~~Wk~ccfs~dgeYv~a~s--------~~aHaLYIWE~~~GsL--VKI-LhG~kgE~l~DV~whp~rp~i~si~sg~ 315 (405)
T KOG1273|consen 250 LQWKKCCFSGDGEYVCAGS--------ARAHALYIWEKSIGSL--VKI-LHGTKGEELLDVNWHPVRPIIASIASGV 315 (405)
T ss_pred hhhhheeecCCccEEEecc--------ccceeEEEEecCCcce--eee-ecCCchhheeecccccceeeeeeccCCc
Confidence 2345567777888665552 3456799999999999 666 23322 11 133578888888886654
No 121
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=42.78 E-value=70 Score=18.77 Aligned_cols=31 Identities=13% Similarity=0.155 Sum_probs=20.6
Q ss_pred CCCEEEEEecccCCccccCCcEEEEEeCCCCceeeeeEEE
Q 016891 306 SGGKVLVDKFEYGEDEDINRWELFWYDLQNQGAAADQVTI 345 (381)
Q Consensus 306 ~g~~i~l~~~~~~~~~~~~~~~l~~yd~~t~~~~~~~v~~ 345 (381)
+++.||+.. ...+.+.++|+++.+.- +++.+
T Consensus 2 d~~~lyv~~--------~~~~~v~~id~~~~~~~-~~i~v 32 (42)
T TIGR02276 2 DGTKLYVTN--------SGSNTVSVIDTATNKVI-ATIPV 32 (42)
T ss_pred CCCEEEEEe--------CCCCEEEEEECCCCeEE-EEEEC
Confidence 566677763 34567999999888772 44444
No 122
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=41.40 E-value=3.4e+02 Score=26.26 Aligned_cols=115 Identities=15% Similarity=0.197 Sum_probs=71.3
Q ss_pred EEECCeeEEEEeeCCCCCCcCEEEEEECCCCeeeeecCCCCCCCCCceeEEEEEECCeEEEEEecCCCceEEEEEEC-Cc
Q 016891 205 TFADGHVHWLVTNNPEDYIENLIIAFNLKSEEFHEVPLPHLENRNDVLVMFVGNFSGCLYFSCLCNYPQPVDIWVLM-GC 283 (381)
Q Consensus 205 v~~nG~lYwl~~~~~~~~~~~~i~~fD~~~e~~~~i~~P~~~~~~~~~~~~L~~~~G~L~~~~~~~~~~~~~iW~l~-~~ 283 (381)
++=+|-|+-.+..+. -+-.+|+.+.. ..-.+|.... .--.+.-.++.-+++...++. .+.+|-|. ..
T Consensus 355 fHpDgLifgtgt~d~------~vkiwdlks~~-~~a~Fpght~----~vk~i~FsENGY~Lat~add~-~V~lwDLRKl~ 422 (506)
T KOG0289|consen 355 FHPDGLIFGTGTPDG------VVKIWDLKSQT-NVAKFPGHTG----PVKAISFSENGYWLATAADDG-SVKLWDLRKLK 422 (506)
T ss_pred EcCCceEEeccCCCc------eEEEEEcCCcc-ccccCCCCCC----ceeEEEeccCceEEEEEecCC-eEEEEEehhhc
Confidence 344677766665542 68889999877 4457776431 222343345556666666665 69999998 22
Q ss_pred eeEEEEecCCCCCeeEEEEEEeCCCEEEEEecccCCccccCCcEEEEEeCCCCceeeeeEE
Q 016891 284 WTKTFSFPRSVGDYVKALAYSKSGGKVLVDKFEYGEDEDINRWELFWYDLQNQGAAADQVT 344 (381)
Q Consensus 284 W~~~~~i~~~~~~~~~~~~~~~~g~~i~l~~~~~~~~~~~~~~~l~~yd~~t~~~~~~~v~ 344 (381)
=-+.+.++. .....-+.+...|..+.+. ...-.++.|+..++.| +++.
T Consensus 423 n~kt~~l~~--~~~v~s~~fD~SGt~L~~~---------g~~l~Vy~~~k~~k~W--~~~~ 470 (506)
T KOG0289|consen 423 NFKTIQLDE--KKEVNSLSFDQSGTYLGIA---------GSDLQVYICKKKTKSW--TEIK 470 (506)
T ss_pred ccceeeccc--cccceeEEEcCCCCeEEee---------cceeEEEEEecccccc--eeee
Confidence 122233331 1235667777778745444 3555799999999999 8884
No 123
>PRK04922 tolB translocation protein TolB; Provisional
Probab=40.79 E-value=3.4e+02 Score=26.16 Aligned_cols=114 Identities=11% Similarity=0.084 Sum_probs=57.6
Q ss_pred eeEEEEeeCCCCCCcCEEEEEECCCCeeeee-cCCCCCCCCCceeEEEEEECC-eEEEEEecCCCceEEEEEEC-CceeE
Q 016891 210 HVHWLVTNNPEDYIENLIIAFNLKSEEFHEV-PLPHLENRNDVLVMFVGNFSG-CLYFSCLCNYPQPVDIWVLM-GCWTK 286 (381)
Q Consensus 210 ~lYwl~~~~~~~~~~~~i~~fD~~~e~~~~i-~~P~~~~~~~~~~~~L~~~~G-~L~~~~~~~~~~~~~iW~l~-~~W~~ 286 (381)
.|++...... ...|..+|+.+.+...+ ..+... ..+.. .-+| +|++....++...+-+|.++ .+-.
T Consensus 217 ~la~~s~~~~----~~~l~~~dl~~g~~~~l~~~~g~~-----~~~~~-SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~- 285 (433)
T PRK04922 217 KLAYVSFERG----RSAIYVQDLATGQRELVASFRGIN-----GAPSF-SPDGRRLALTLSRDGNPEIYVMDLGSRQLT- 285 (433)
T ss_pred EEEEEecCCC----CcEEEEEECCCCCEEEeccCCCCc-----cCceE-CCCCCEEEEEEeCCCCceEEEEECCCCCeE-
Confidence 4666554322 12688899988766555 333211 11122 2255 45554444332234444444 3322
Q ss_pred EEEecCCCCCeeEEEEEEeCCCEEEEEecccCCccccCCcEEEEEeCCCCceeeeeEEE
Q 016891 287 TFSFPRSVGDYVKALAYSKSGGKVLVDKFEYGEDEDINRWELFWYDLQNQGAAADQVTI 345 (381)
Q Consensus 287 ~~~i~~~~~~~~~~~~~~~~g~~i~l~~~~~~~~~~~~~~~l~~yd~~t~~~~~~~v~~ 345 (381)
.+....+ ......+.++|..|++.+. . .....++.+|+++++. +++..
T Consensus 286 --~lt~~~~-~~~~~~~spDG~~l~f~sd-----~-~g~~~iy~~dl~~g~~--~~lt~ 333 (433)
T PRK04922 286 --RLTNHFG-IDTEPTWAPDGKSIYFTSD-----R-GGRPQIYRVAASGGSA--ERLTF 333 (433)
T ss_pred --ECccCCC-CccceEECCCCCEEEEEEC-----C-CCCceEEEEECCCCCe--EEeec
Confidence 2221111 1223456778887777731 1 1134699999999988 87743
No 124
>PF14339 DUF4394: Domain of unknown function (DUF4394)
Probab=39.72 E-value=90 Score=27.48 Aligned_cols=55 Identities=18% Similarity=0.151 Sum_probs=38.1
Q ss_pred cCcEEEEeeCCCcEEEEccCCcceeeC--CCCCCCCCCceEEEEEeEECCCCCEEEEEE
Q 016891 108 CNGLIAFKNDENGIALWNPSTEEHLIL--PKFWGDLKDFMVVDGFGYDAVNDDYKVVRL 164 (381)
Q Consensus 108 ~~GLl~~~~~~~~~~V~NP~T~~~~~L--P~~~~~~~~~~~~~~~~~d~~~~~ykVv~~ 164 (381)
.+|.|.--....++|-+||.|+.-..+ .+..... ....+++.|+|..++-+||.-
T Consensus 37 a~G~LYgl~~~g~lYtIn~~tG~aT~vg~s~~~~al--~g~~~gvDFNP~aDRlRvvs~ 93 (236)
T PF14339_consen 37 ANGQLYGLGSTGRLYTINPATGAATPVGASPLTVAL--SGTAFGVDFNPAADRLRVVSN 93 (236)
T ss_pred CCCCEEEEeCCCcEEEEECCCCeEEEeecccccccc--cCceEEEecCcccCcEEEEcc
Confidence 467775445567899999999998777 3333222 223678888998888887644
No 125
>PF13088 BNR_2: BNR repeat-like domain; PDB: 2F11_A 2F0Z_A 1VCU_B 2F25_B 1SO7_A 2F29_A 1SNT_A 2F13_A 2F28_A 2F27_A ....
Probab=39.56 E-value=2.7e+02 Score=24.60 Aligned_cols=128 Identities=13% Similarity=0.147 Sum_probs=69.4
Q ss_pred eEEEE-EEcCCC-cEEEcccCCCcceecCCCcEE--ECCeeEEEEeeCCCCCCcCEEEEEECC-CCeeeee---cCCCCC
Q 016891 175 TEIAV-YSLRTN-SWRRIRVDFPYYILHGWDGTF--ADGHVHWLVTNNPEDYIENLIIAFNLK-SEEFHEV---PLPHLE 246 (381)
Q Consensus 175 ~~~~v-yss~t~-~W~~~~~~~p~~~~~~~~~v~--~nG~lYwl~~~~~~~~~~~~i~~fD~~-~e~~~~i---~~P~~~ 246 (381)
....+ |+...+ +|+... .++.........+. -+|.+|.+.... ... ....+.-.. .++|+.. .+|...
T Consensus 133 ~~~~~~~S~D~G~tW~~~~-~~~~~~~~~e~~~~~~~dG~l~~~~R~~-~~~--~~~~~~S~D~G~TWs~~~~~~~~~~~ 208 (275)
T PF13088_consen 133 FSAFVYYSDDGGKTWSSGS-PIPDGQGECEPSIVELPDGRLLAVFRTE-GND--DIYISRSTDGGRTWSPPQPTNLPNPN 208 (275)
T ss_dssp EEEEEEEESSTTSSEEEEE-ECECSEEEEEEEEEEETTSEEEEEEEEC-SST--EEEEEEESSTTSS-EEEEEEECSSCC
T ss_pred cceEEEEeCCCCceeeccc-cccccCCcceeEEEECCCCcEEEEEEcc-CCC--cEEEEEECCCCCcCCCceecccCccc
Confidence 44444 554444 799887 33211111112222 478999988763 111 233444433 4688864 444332
Q ss_pred CCCCceeEEEEEE-CCeEEEEEecC-CCceEEEEEEC---CceeEEEEecCCC--CCeeEEEEEEeCCCEEEE
Q 016891 247 NRNDVLVMFVGNF-SGCLYFSCLCN-YPQPVDIWVLM---GCWTKTFSFPRSV--GDYVKALAYSKSGGKVLV 312 (381)
Q Consensus 247 ~~~~~~~~~L~~~-~G~L~~~~~~~-~~~~~~iW~l~---~~W~~~~~i~~~~--~~~~~~~~~~~~g~~i~l 312 (381)
....+..+ +|++.++.... ....+.|+.-+ ..|.....|.... ...+.-+...++|+ |.+
T Consensus 209 -----~~~~~~~~~~g~~~~~~~~~~~r~~l~l~~S~D~g~tW~~~~~i~~~~~~~~~Y~~~~~~~dg~-l~i 275 (275)
T PF13088_consen 209 -----SSISLVRLSDGRLLLVYNNPDGRSNLSLYVSEDGGKTWSRPKTIDDGPNGDSGYPSLTQLPDGK-LYI 275 (275)
T ss_dssp -----EEEEEEECTTSEEEEEEECSSTSEEEEEEEECTTCEEEEEEEEEEEEE-CCEEEEEEEEEETTE-EEE
T ss_pred -----CCceEEEcCCCCEEEEEECCCCCCceEEEEEeCCCCcCCccEEEeCCCCCcEECCeeEEeCCCc-CCC
Confidence 34556665 68888888842 22367777666 8999988887322 12344455555665 653
No 126
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=39.39 E-value=5e+02 Score=27.65 Aligned_cols=71 Identities=14% Similarity=0.211 Sum_probs=44.4
Q ss_pred eEEEEEE--CCeEEEEEecCCCceEEEEEEC-CceeEEEEec-CCCCCeeEEEEEEeCCCEEEEEecccCCccccCCcEE
Q 016891 253 VMFVGNF--SGCLYFSCLCNYPQPVDIWVLM-GCWTKTFSFP-RSVGDYVKALAYSKSGGKVLVDKFEYGEDEDINRWEL 328 (381)
Q Consensus 253 ~~~L~~~--~G~L~~~~~~~~~~~~~iW~l~-~~W~~~~~i~-~~~~~~~~~~~~~~~g~~i~l~~~~~~~~~~~~~~~l 328 (381)
...+.-. +|.|.+....+. +. +.. ..|++.+.+. ......+..+...++|++|--. .-..+|
T Consensus 191 ~~~~aW~Pk~g~la~~~~d~~---Vk--vy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs---------~~~g~I 256 (933)
T KOG1274|consen 191 CTRLAWHPKGGTLAVPPVDNT---VK--VYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAAS---------TLDGQI 256 (933)
T ss_pred eeeeeecCCCCeEEeeccCCe---EE--EEccCCceeheeecccccccceEEEEEcCCCcEEeee---------ccCCcE
Confidence 3344443 367777766543 22 344 7899988887 3233336677777888855544 455679
Q ss_pred EEEeCCCCc
Q 016891 329 FWYDLQNQG 337 (381)
Q Consensus 329 ~~yd~~t~~ 337 (381)
.++|.+|..
T Consensus 257 ~vWnv~t~~ 265 (933)
T KOG1274|consen 257 LVWNVDTHE 265 (933)
T ss_pred EEEecccch
Confidence 999988633
No 127
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=39.35 E-value=3.4e+02 Score=25.71 Aligned_cols=189 Identities=13% Similarity=0.021 Sum_probs=91.8
Q ss_pred CcEEEEccCCcceeeCCCCCCCCCCceEEEEEeEECCCCCEEEEEEEEEeecCccceEEEEEEcCCCcEEEcccCCCcce
Q 016891 119 NGIALWNPSTEEHLILPKFWGDLKDFMVVDGFGYDAVNDDYKVVRLVQLVIGNVGYTEIAVYSLRTNSWRRIRVDFPYYI 198 (381)
Q Consensus 119 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~d~~~~~ykVv~~~~~~~~~~~~~~~~vyss~t~~W~~~~~~~p~~~ 198 (381)
..++++|..+++...+...... .....+.+..+ +++.... ..+...+.+++.+++..+.+. ......
T Consensus 214 ~~i~v~d~~~g~~~~~~~~~~~------~~~~~~spDg~--~l~~~~~----~~~~~~i~~~d~~~~~~~~l~-~~~~~~ 280 (417)
T TIGR02800 214 PEIYVQDLATGQREKVASFPGM------NGAPAFSPDGS--KLAVSLS----KDGNPDIYVMDLDGKQLTRLT-NGPGID 280 (417)
T ss_pred cEEEEEECCCCCEEEeecCCCC------ccceEECCCCC--EEEEEEC----CCCCccEEEEECCCCCEEECC-CCCCCC
Confidence 5789999999877666533211 11233343322 2222111 112256778888888777665 221100
Q ss_pred ecCCCcEEECC-eeEEEEeeCCCCCCcCEEEEEECCCCeeeeecCCCCCCCCCceeEEEEEECCeEEEEEecCCCceEEE
Q 016891 199 LHGWDGTFADG-HVHWLVTNNPEDYIENLIIAFNLKSEEFHEVPLPHLENRNDVLVMFVGNFSGCLYFSCLCNYPQPVDI 277 (381)
Q Consensus 199 ~~~~~~v~~nG-~lYwl~~~~~~~~~~~~i~~fD~~~e~~~~i~~P~~~~~~~~~~~~L~~~~G~L~~~~~~~~~~~~~i 277 (381)
......-+| .|++...... ...|..+|+.+...+.+...... ...+. ..-+|+..+....... ...|
T Consensus 281 --~~~~~s~dg~~l~~~s~~~g----~~~iy~~d~~~~~~~~l~~~~~~----~~~~~-~spdg~~i~~~~~~~~-~~~i 348 (417)
T TIGR02800 281 --TEPSWSPDGKSIAFTSDRGG----SPQIYMMDADGGEVRRLTFRGGY----NASPS-WSPDGDLIAFVHREGG-GFNI 348 (417)
T ss_pred --CCEEECCCCCEEEEEECCCC----CceEEEEECCCCCEEEeecCCCC----ccCeE-ECCCCCEEEEEEccCC-ceEE
Confidence 001111255 4555543321 12688889887776655322111 11122 2235665555544432 5667
Q ss_pred EEEC--CceeEEEEecCCCCCeeEEEEEEeCCCEEEEEecccCCccccCCcEEEEEeCCCCceeeeeEE
Q 016891 278 WVLM--GCWTKTFSFPRSVGDYVKALAYSKSGGKVLVDKFEYGEDEDINRWELFWYDLQNQGAAADQVT 344 (381)
Q Consensus 278 W~l~--~~W~~~~~i~~~~~~~~~~~~~~~~g~~i~l~~~~~~~~~~~~~~~l~~yd~~t~~~~~~~v~ 344 (381)
+.++ ..|.+. +.... .... ..+.++|..|++... ......+++++.+.+.. +.+.
T Consensus 349 ~~~d~~~~~~~~--l~~~~-~~~~-p~~spdg~~l~~~~~------~~~~~~l~~~~~~g~~~--~~~~ 405 (417)
T TIGR02800 349 AVMDLDGGGERV--LTDTG-LDES-PSFAPNGRMILYATT------RGGRGVLGLVSTDGRFR--ARLP 405 (417)
T ss_pred EEEeCCCCCeEE--ccCCC-CCCC-ceECCCCCEEEEEEe------CCCcEEEEEEECCCcee--eECC
Confidence 7776 444332 22101 1112 245668886766631 11234577888777766 6663
No 128
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=38.71 E-value=3.5e+02 Score=25.64 Aligned_cols=143 Identities=15% Similarity=0.118 Sum_probs=70.8
Q ss_pred eEEEEEEcCCCcEEEcccCCCcceecCCCcEEECC-eeEEEEeeCCCCCCcCEEEEEECCCCeeeeecCCCCCCCCCcee
Q 016891 175 TEIAVYSLRTNSWRRIRVDFPYYILHGWDGTFADG-HVHWLVTNNPEDYIENLIIAFNLKSEEFHEVPLPHLENRNDVLV 253 (381)
Q Consensus 175 ~~~~vyss~t~~W~~~~~~~p~~~~~~~~~v~~nG-~lYwl~~~~~~~~~~~~i~~fD~~~e~~~~i~~P~~~~~~~~~~ 253 (381)
..+.+++..++.-+.+. ..+.... .....-+| .|++...... ...|..+|+.+...+.+....... ..
T Consensus 214 ~~i~v~d~~~g~~~~~~-~~~~~~~--~~~~spDg~~l~~~~~~~~----~~~i~~~d~~~~~~~~l~~~~~~~----~~ 282 (417)
T TIGR02800 214 PEIYVQDLATGQREKVA-SFPGMNG--APAFSPDGSKLAVSLSKDG----NPDIYVMDLDGKQLTRLTNGPGID----TE 282 (417)
T ss_pred cEEEEEECCCCCEEEee-cCCCCcc--ceEECCCCCEEEEEECCCC----CccEEEEECCCCCEEECCCCCCCC----CC
Confidence 56888888888666554 2221110 01112245 3554433221 126888899887665552111111 11
Q ss_pred EEEEEECCe-EEEEEecCCCceEEEEEEC---CceeEEEEecCCCCCeeEEEEEEeCCCEEEEEecccCCccccCCcEEE
Q 016891 254 MFVGNFSGC-LYFSCLCNYPQPVDIWVLM---GCWTKTFSFPRSVGDYVKALAYSKSGGKVLVDKFEYGEDEDINRWELF 329 (381)
Q Consensus 254 ~~L~~~~G~-L~~~~~~~~~~~~~iW~l~---~~W~~~~~i~~~~~~~~~~~~~~~~g~~i~l~~~~~~~~~~~~~~~l~ 329 (381)
+... -+|+ |.+.....+ ...||.++ ..+.++.. . . .......+.++|+.|++... ......++
T Consensus 283 ~~~s-~dg~~l~~~s~~~g--~~~iy~~d~~~~~~~~l~~-~--~-~~~~~~~~spdg~~i~~~~~------~~~~~~i~ 349 (417)
T TIGR02800 283 PSWS-PDGKSIAFTSDRGG--SPQIYMMDADGGEVRRLTF-R--G-GYNASPSWSPDGDLIAFVHR------EGGGFNIA 349 (417)
T ss_pred EEEC-CCCCEEEEEECCCC--CceEEEEECCCCCEEEeec-C--C-CCccCeEECCCCCEEEEEEc------cCCceEEE
Confidence 1111 2564 444433333 34677766 44443221 1 1 11223345678887777631 01123799
Q ss_pred EEeCCCCceeeeeE
Q 016891 330 WYDLQNQGAAADQV 343 (381)
Q Consensus 330 ~yd~~t~~~~~~~v 343 (381)
.+|+.++.. +.+
T Consensus 350 ~~d~~~~~~--~~l 361 (417)
T TIGR02800 350 VMDLDGGGE--RVL 361 (417)
T ss_pred EEeCCCCCe--EEc
Confidence 999999887 666
No 129
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=38.50 E-value=4.2e+02 Score=26.55 Aligned_cols=111 Identities=11% Similarity=0.176 Sum_probs=57.6
Q ss_pred ccCcEEEEee-CCCcEEEEccCCcceeeCCCCCCCCCCceEEEEEeEECCCCCEEEEEEEEEeecCccceEEEEEEcCCC
Q 016891 107 SCNGLIAFKN-DENGIALWNPSTEEHLILPKFWGDLKDFMVVDGFGYDAVNDDYKVVRLVQLVIGNVGYTEIAVYSLRTN 185 (381)
Q Consensus 107 s~~GLl~~~~-~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~d~~~~~ykVv~~~~~~~~~~~~~~~~vyss~t~ 185 (381)
..+|-+|+++ ++.++.||||..++... .....+ ....+..-|-|-+++-.|+.-.. ...+.+|+...-
T Consensus 59 n~dG~lL~SGSDD~r~ivWd~~~~Kllh--sI~TgH--taNIFsvKFvP~tnnriv~sgAg-------Dk~i~lfdl~~~ 127 (758)
T KOG1310|consen 59 NADGELLASGSDDTRLIVWDPFEYKLLH--SISTGH--TANIFSVKFVPYTNNRIVLSGAG-------DKLIKLFDLDSS 127 (758)
T ss_pred cCCCCEEeecCCcceEEeecchhcceee--eeeccc--ccceeEEeeeccCCCeEEEeccC-------cceEEEEecccc
Confidence 3578788776 56789999999544333 233223 22344555667666544433321 156778877642
Q ss_pred cEEEccc--CCCc---ceecC--CCcE-EECC-eeEEEEeeCCCCCCcCEEEEEECCC
Q 016891 186 SWRRIRV--DFPY---YILHG--WDGT-FADG-HVHWLVTNNPEDYIENLIIAFNLKS 234 (381)
Q Consensus 186 ~W~~~~~--~~p~---~~~~~--~~~v-~~nG-~lYwl~~~~~~~~~~~~i~~fD~~~ 234 (381)
+=+..+- ..+. ..... ..-+ .=|| ..+|.+..+. .|.-+|+..
T Consensus 128 ~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDG------tirQyDiRE 179 (758)
T KOG1310|consen 128 KEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDG------TIRQYDIRE 179 (758)
T ss_pred cccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCc------ceeeecccC
Confidence 2111110 0010 00000 0222 2244 6778877663 688888875
No 130
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=38.15 E-value=4.1e+02 Score=26.26 Aligned_cols=69 Identities=19% Similarity=0.225 Sum_probs=46.8
Q ss_pred EEEEEEC---CeEEEEEecCCCceEEEEEEC-----CceeEEEEecCCCCCeeEEEEEEeCCCEEEEEecccCCccccCC
Q 016891 254 MFVGNFS---GCLYFSCLCNYPQPVDIWVLM-----GCWTKTFSFPRSVGDYVKALAYSKSGGKVLVDKFEYGEDEDINR 325 (381)
Q Consensus 254 ~~L~~~~---G~L~~~~~~~~~~~~~iW~l~-----~~W~~~~~i~~~~~~~~~~~~~~~~g~~i~l~~~~~~~~~~~~~ 325 (381)
..|..+. -.|.....+++ .+.+|..+ -.|.+.+.-| .+-+|+.+..+.|++.. .-+
T Consensus 167 vRll~ys~skr~lL~~asd~G--~VtlwDv~g~sp~~~~~~~HsAP------~~gicfspsne~l~vsV--------G~D 230 (673)
T KOG4378|consen 167 VRLLRYSPSKRFLLSIASDKG--AVTLWDVQGMSPIFHASEAHSAP------CRGICFSPSNEALLVSV--------GYD 230 (673)
T ss_pred EEEeecccccceeeEeeccCC--eEEEEeccCCCcccchhhhccCC------cCcceecCCccceEEEe--------ccc
Confidence 4455542 23333444444 78999988 6788888765 45677788777565552 345
Q ss_pred cEEEEEeCCCCce
Q 016891 326 WELFWYDLQNQGA 338 (381)
Q Consensus 326 ~~l~~yd~~t~~~ 338 (381)
.+|+.||..+++.
T Consensus 231 kki~~yD~~s~~s 243 (673)
T KOG4378|consen 231 KKINIYDIRSQAS 243 (673)
T ss_pred ceEEEeecccccc
Confidence 6899999999988
No 131
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=35.40 E-value=3.2e+02 Score=24.23 Aligned_cols=185 Identities=11% Similarity=0.119 Sum_probs=92.6
Q ss_pred CcEEEEee-CCCcEEEEccCCcceeeCCCCCCCCCCceEEEEEeEECCCCCEEEEEEEEEeecCccceEEEEEEcCCC--
Q 016891 109 NGLIAFKN-DENGIALWNPSTEEHLILPKFWGDLKDFMVVDGFGYDAVNDDYKVVRLVQLVIGNVGYTEIAVYSLRTN-- 185 (381)
Q Consensus 109 ~GLl~~~~-~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~d~~~~~ykVv~~~~~~~~~~~~~~~~vyss~t~-- 185 (381)
+|-.|+.. .++.+-+|||..+...+-=.. +-....-++..+|.+ | +.. ..+...+.+++-+||
T Consensus 28 dGnY~ltcGsdrtvrLWNp~rg~liktYsg---hG~EVlD~~~s~Dns----k---f~s----~GgDk~v~vwDV~TGkv 93 (307)
T KOG0316|consen 28 DGNYCLTCGSDRTVRLWNPLRGALIKTYSG---HGHEVLDAALSSDNS----K---FAS----CGGDKAVQVWDVNTGKV 93 (307)
T ss_pred CCCEEEEcCCCceEEeecccccceeeeecC---CCceeeecccccccc----c---ccc----CCCCceEEEEEcccCee
Confidence 45555543 567889999998886551111 100001112222221 1 111 112367888888886
Q ss_pred --cEEEcccCCCcceecCCCcEEECCeeEEEEeeCCCCCCcCEEEEEECCCCeeeeecCCCCCCCCCceeEEEEEECCeE
Q 016891 186 --SWRRIRVDFPYYILHGWDGTFADGHVHWLVTNNPEDYIENLIIAFNLKSEEFHEVPLPHLENRNDVLVMFVGNFSGCL 263 (381)
Q Consensus 186 --~W~~~~~~~p~~~~~~~~~v~~nG~lYwl~~~~~~~~~~~~i~~fD~~~e~~~~i~~P~~~~~~~~~~~~L~~~~G~L 263 (381)
.|+...... +.|-+|..--.+...... ..+-++|-++..+.+++.-....+ .+.-....+..
T Consensus 94 ~Rr~rgH~aqV--------NtV~fNeesSVv~SgsfD----~s~r~wDCRS~s~ePiQildea~D----~V~Si~v~~he 157 (307)
T KOG0316|consen 94 DRRFRGHLAQV--------NTVRFNEESSVVASGSFD----SSVRLWDCRSRSFEPIQILDEAKD----GVSSIDVAEHE 157 (307)
T ss_pred eeeccccccee--------eEEEecCcceEEEecccc----ceeEEEEcccCCCCccchhhhhcC----ceeEEEecccE
Confidence 455443221 333333322122111111 278999999998887755443322 23334456667
Q ss_pred EEEEecCCCceEEEEEECCceeEEEEecCCCCCeeEEEEEEeCCCEEEEEecccCCccccCCcEEEEEeCCCCce
Q 016891 264 YFSCLCNYPQPVDIWVLMGCWTKTFSFPRSVGDYVKALAYSKSGGKVLVDKFEYGEDEDINRWELFWYDLQNQGA 338 (381)
Q Consensus 264 ~~~~~~~~~~~~~iW~l~~~W~~~~~i~~~~~~~~~~~~~~~~g~~i~l~~~~~~~~~~~~~~~l~~yd~~t~~~ 338 (381)
.++...++ .++.+.+...=... ..++.-...+.+.++|.-.+.. .-+..+-..|-+|+++
T Consensus 158 IvaGS~DG--tvRtydiR~G~l~s----Dy~g~pit~vs~s~d~nc~La~---------~l~stlrLlDk~tGkl 217 (307)
T KOG0316|consen 158 IVAGSVDG--TVRTYDIRKGTLSS----DYFGHPITSVSFSKDGNCSLAS---------SLDSTLRLLDKETGKL 217 (307)
T ss_pred EEeeccCC--cEEEEEeecceeeh----hhcCCcceeEEecCCCCEEEEe---------eccceeeecccchhHH
Confidence 77776666 45565554110111 1133445566777777733333 2344566777777665
No 132
>PRK05137 tolB translocation protein TolB; Provisional
Probab=35.28 E-value=4.2e+02 Score=25.56 Aligned_cols=187 Identities=12% Similarity=0.114 Sum_probs=91.6
Q ss_pred CCcEEEEccCCcceeeCCCCCCCCCCceEEEEEeEECCCCCEEEEEEEEEeecCccceEEEEEEcCCCcEEEcccCCCcc
Q 016891 118 ENGIALWNPSTEEHLILPKFWGDLKDFMVVDGFGYDAVNDDYKVVRLVQLVIGNVGYTEIAVYSLRTNSWRRIRVDFPYY 197 (381)
Q Consensus 118 ~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~d~~~~~ykVv~~~~~~~~~~~~~~~~vyss~t~~W~~~~~~~p~~ 197 (381)
...+++++.-++..+.|..... ......+.|. +. +++-... ..+...+.+++..++..+.+. ..+..
T Consensus 181 ~~~l~~~d~dg~~~~~lt~~~~------~v~~p~wSpD-G~-~lay~s~----~~g~~~i~~~dl~~g~~~~l~-~~~g~ 247 (435)
T PRK05137 181 IKRLAIMDQDGANVRYLTDGSS------LVLTPRFSPN-RQ-EITYMSY----ANGRPRVYLLDLETGQRELVG-NFPGM 247 (435)
T ss_pred ceEEEEECCCCCCcEEEecCCC------CeEeeEECCC-CC-EEEEEEe----cCCCCEEEEEECCCCcEEEee-cCCCc
Confidence 3478888887666555543221 1222333332 22 3333321 112267888999888887766 33321
Q ss_pred eecCCCcEEECC-eeEEEEeeCCCCCCcCEEEEEECCCCeeeee-cCCCCCCCCCceeEEEEEECCe-EEEEEecCCCce
Q 016891 198 ILHGWDGTFADG-HVHWLVTNNPEDYIENLIIAFNLKSEEFHEV-PLPHLENRNDVLVMFVGNFSGC-LYFSCLCNYPQP 274 (381)
Q Consensus 198 ~~~~~~~v~~nG-~lYwl~~~~~~~~~~~~i~~fD~~~e~~~~i-~~P~~~~~~~~~~~~L~~~~G~-L~~~~~~~~~~~ 274 (381)
... ....-+| .|.+....+. ...|..+|+.+...+.+ ..+... ..+.. .-+|+ |++.....+ .
T Consensus 248 ~~~--~~~SPDG~~la~~~~~~g----~~~Iy~~d~~~~~~~~Lt~~~~~~-----~~~~~-spDG~~i~f~s~~~g--~ 313 (435)
T PRK05137 248 TFA--PRFSPDGRKVVMSLSQGG----NTDIYTMDLRSGTTTRLTDSPAID-----TSPSY-SPDGSQIVFESDRSG--S 313 (435)
T ss_pred ccC--cEECCCCCEEEEEEecCC----CceEEEEECCCCceEEccCCCCcc-----CceeE-cCCCCEEEEEECCCC--C
Confidence 110 1122355 3444433221 12688889988766554 222111 11122 12454 444443333 4
Q ss_pred EEEEEEC---CceeEEEEecCCCCCeeEEEEEEeCCCEEEEEecccCCccccCCcEEEEEeCCCCceeeeeE
Q 016891 275 VDIWVLM---GCWTKTFSFPRSVGDYVKALAYSKSGGKVLVDKFEYGEDEDINRWELFWYDLQNQGAAADQV 343 (381)
Q Consensus 275 ~~iW~l~---~~W~~~~~i~~~~~~~~~~~~~~~~g~~i~l~~~~~~~~~~~~~~~l~~yd~~t~~~~~~~v 343 (381)
.+||.++ .+..++.. . .+. .....+.++|+.|++.... .....++.+|++++.. +.+
T Consensus 314 ~~Iy~~d~~g~~~~~lt~-~--~~~-~~~~~~SpdG~~ia~~~~~------~~~~~i~~~d~~~~~~--~~l 373 (435)
T PRK05137 314 PQLYVMNADGSNPRRISF-G--GGR-YSTPVWSPRGDLIAFTKQG------GGQFSIGVMKPDGSGE--RIL 373 (435)
T ss_pred CeEEEEECCCCCeEEeec-C--CCc-ccCeEECCCCCEEEEEEcC------CCceEEEEEECCCCce--Eec
Confidence 5677776 22222221 1 111 2223456788878776310 1234799999988877 665
No 133
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=35.08 E-value=3e+02 Score=27.63 Aligned_cols=33 Identities=18% Similarity=0.454 Sum_probs=26.9
Q ss_pred eeEEcccCcEEEEeeCCCcEEEEccCCcceeeC
Q 016891 102 TPIIDSCNGLIAFKNDENGIALWNPSTEEHLIL 134 (381)
Q Consensus 102 ~~~~~s~~GLl~~~~~~~~~~V~NP~T~~~~~L 134 (381)
..-+..+||||++.+....+-.|+|-+++.+..
T Consensus 180 ~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~ 212 (703)
T KOG2321|consen 180 VVSINEEHGLLACGTEDGVVEFWDPRDKSRVGT 212 (703)
T ss_pred eeeecCccceEEecccCceEEEecchhhhhhee
Confidence 445567899999998888999999999886654
No 134
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=35.02 E-value=4.3e+02 Score=25.67 Aligned_cols=140 Identities=11% Similarity=0.111 Sum_probs=70.4
Q ss_pred ECCeeEEEEeeCCCCCCcCEEEEEECCCCeee-eecCCCCCCC----CCceeEEEEEECCeEEEEEecCCC-ceEEEEEE
Q 016891 207 ADGHVHWLVTNNPEDYIENLIIAFNLKSEEFH-EVPLPHLENR----NDVLVMFVGNFSGCLYFSCLCNYP-QPVDIWVL 280 (381)
Q Consensus 207 ~nG~lYwl~~~~~~~~~~~~i~~fD~~~e~~~-~i~~P~~~~~----~~~~~~~L~~~~G~L~~~~~~~~~-~~~~iW~l 280 (381)
.|+.+|-.+.+. .+-.+|+.....- .+-+|..... -....++++..+|+++......-. .+..|-+.
T Consensus 187 ~~~rl~TaS~D~-------t~k~wdlS~g~LLlti~fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k 259 (476)
T KOG0646|consen 187 TNARLYTASEDR-------TIKLWDLSLGVLLLTITFPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQK 259 (476)
T ss_pred ccceEEEecCCc-------eEEEEEeccceeeEEEecCCcceeEEEcccccEEEecCCcceEEeeehhcCCccccccccc
Confidence 567777766554 6888898877552 2344442210 012244555555555555444311 11111100
Q ss_pred C--CceeEEEEec-CCCCCeeEEEEEEeCCCEEEEEecccCCccccCCcEEEEEeCCCCceeeeeE-E-EecCCCCceeE
Q 016891 281 M--GCWTKTFSFP-RSVGDYVKALAYSKSGGKVLVDKFEYGEDEDINRWELFWYDLQNQGAAADQV-T-IHGVPQGCRDT 355 (381)
Q Consensus 281 ~--~~W~~~~~i~-~~~~~~~~~~~~~~~g~~i~l~~~~~~~~~~~~~~~l~~yd~~t~~~~~~~v-~-~~~~~~~~~~~ 355 (381)
. .+=.++..+- ..-+.....+++.-||. +++.+ ..+.+++++|..+++. -+. . ..+.... .++
T Consensus 260 ~~~~~~t~~~~~~Gh~~~~~ITcLais~Dgt-lLlSG--------d~dg~VcvWdi~S~Q~--iRtl~~~kgpVtn-L~i 327 (476)
T KOG0646|consen 260 GRHEENTQINVLVGHENESAITCLAISTDGT-LLLSG--------DEDGKVCVWDIYSKQC--IRTLQTSKGPVTN-LQI 327 (476)
T ss_pred ccccccceeeeeccccCCcceeEEEEecCcc-EEEee--------CCCCCEEEEecchHHH--HHHHhhhccccce-eEe
Confidence 0 0001111110 00112456677777888 77774 4566799999999998 444 2 3333333 455
Q ss_pred EEEeeceecC
Q 016891 356 IVCVDSLVSL 365 (381)
Q Consensus 356 ~~y~~sl~~~ 365 (381)
.+|....+..
T Consensus 328 ~~~~~~~~l~ 337 (476)
T KOG0646|consen 328 NPLERGIILF 337 (476)
T ss_pred eccccceecc
Confidence 5665554443
No 135
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=34.93 E-value=5.1e+02 Score=26.49 Aligned_cols=111 Identities=16% Similarity=0.182 Sum_probs=64.8
Q ss_pred EECCeeEEEEeeCCCCCCcCEEEEEECCCCeeeee-cC-CCCCCCCCceeEEEEEE-CC-eEEEEEecCCCceEEEEEEC
Q 016891 206 FADGHVHWLVTNNPEDYIENLIIAFNLKSEEFHEV-PL-PHLENRNDVLVMFVGNF-SG-CLYFSCLCNYPQPVDIWVLM 281 (381)
Q Consensus 206 ~~nG~lYwl~~~~~~~~~~~~i~~fD~~~e~~~~i-~~-P~~~~~~~~~~~~L~~~-~G-~L~~~~~~~~~~~~~iW~l~ 281 (381)
..++..-++.... ...+..|++++.++..+ .. |.... ..-..|+.. +| =++++..+ + .+.+|.++
T Consensus 437 tid~~k~~~~s~~-----~~~le~~el~~ps~kel~~~~~~~~~---~~I~~l~~SsdG~yiaa~~t~-g--~I~v~nl~ 505 (691)
T KOG2048|consen 437 TIDKNKLFLVSKN-----IFSLEEFELETPSFKELKSIQSQAKC---PSISRLVVSSDGNYIAAISTR-G--QIFVYNLE 505 (691)
T ss_pred EecCceEEEEecc-----cceeEEEEecCcchhhhhccccccCC---CcceeEEEcCCCCEEEEEecc-c--eEEEEEcc
Confidence 4556555555422 23799999999888776 22 22111 123345544 45 46666633 3 68899998
Q ss_pred ---CceeEEEEecCCCCCeeEEEEEEe-CCCEEEEEecccCCccccCCcEEEEEeCCCCceeeeeE
Q 016891 282 ---GCWTKTFSFPRSVGDYVKALAYSK-SGGKVLVDKFEYGEDEDINRWELFWYDLQNQGAAADQV 343 (381)
Q Consensus 282 ---~~W~~~~~i~~~~~~~~~~~~~~~-~g~~i~l~~~~~~~~~~~~~~~l~~yd~~t~~~~~~~v 343 (381)
..|.+. +++ .....+++.+ +...|++. +...+++-||++.+++ .+.
T Consensus 506 ~~~~~~l~~-rln----~~vTa~~~~~~~~~~lvva---------ts~nQv~efdi~~~~l--~~w 555 (691)
T KOG2048|consen 506 TLESHLLKV-RLN----IDVTAAAFSPFVRNRLVVA---------TSNNQVFEFDIEARNL--TRW 555 (691)
T ss_pred cceeecchh-ccC----cceeeeeccccccCcEEEE---------ecCCeEEEEecchhhh--hhh
Confidence 334331 122 2345555553 44448888 6778999999977766 544
No 136
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=34.45 E-value=2.7e+02 Score=26.06 Aligned_cols=107 Identities=15% Similarity=0.149 Sum_probs=60.2
Q ss_pred EEEEEECCCCeeeeecCCCCCCCCCceeEEEEEECCeEEEEEecC-------CCceEEEEEEC---CceeEEEEecCC--
Q 016891 226 LIIAFNLKSEEFHEVPLPHLENRNDVLVMFVGNFSGCLYFSCLCN-------YPQPVDIWVLM---GCWTKTFSFPRS-- 293 (381)
Q Consensus 226 ~i~~fD~~~e~~~~i~~P~~~~~~~~~~~~L~~~~G~L~~~~~~~-------~~~~~~iW~l~---~~W~~~~~i~~~-- 293 (381)
.+.++|..+.+..-+ .|.... .+..+..-+..+|++.... .+..+.+|-.+ -.++ -.||+-
T Consensus 18 rv~viD~d~~k~lGm-i~~g~~----~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~E--I~iP~k~R 90 (342)
T PF06433_consen 18 RVYVIDADSGKLLGM-IDTGFL----GNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGE--IEIPPKPR 90 (342)
T ss_dssp EEEEEETTTTEEEEE-EEEESS----EEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEE--EEETTS-B
T ss_pred eEEEEECCCCcEEEE-eecccC----CceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccce--EecCCcch
Confidence 688899888776322 222221 1222222234667666442 23367888887 3333 345521
Q ss_pred --CCCeeEEEEEEeCCCEEEEEecccCCccccCCcEEEEEeCCCCceeeeeEEEec
Q 016891 294 --VGDYVKALAYSKSGGKVLVDKFEYGEDEDINRWELFWYDLQNQGAAADQVTIHG 347 (381)
Q Consensus 294 --~~~~~~~~~~~~~g~~i~l~~~~~~~~~~~~~~~l~~yd~~t~~~~~~~v~~~~ 347 (381)
........++..+|+.+++.++ .-...|=+-|++.+++ +++|.+++
T Consensus 91 ~~~~~~~~~~~ls~dgk~~~V~N~-------TPa~SVtVVDl~~~kv-v~ei~~PG 138 (342)
T PF06433_consen 91 AQVVPYKNMFALSADGKFLYVQNF-------TPATSVTVVDLAAKKV-VGEIDTPG 138 (342)
T ss_dssp --BS--GGGEEE-TTSSEEEEEEE-------SSSEEEEEEETTTTEE-EEEEEGTS
T ss_pred heecccccceEEccCCcEEEEEcc-------CCCCeEEEEECCCCce-eeeecCCC
Confidence 1123344677788998888763 3456799999999999 46665444
No 137
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=34.42 E-value=5.5e+02 Score=26.65 Aligned_cols=93 Identities=15% Similarity=0.269 Sum_probs=53.6
Q ss_pred EEEEEECCCCeeeeecCCCCCCCCC-ceeEEEEEECCeEEEEEecCCCceEEEEEEC-----CceeEEEEecCCCCCeeE
Q 016891 226 LIIAFNLKSEEFHEVPLPHLENRND-VLVMFVGNFSGCLYFSCLCNYPQPVDIWVLM-----GCWTKTFSFPRSVGDYVK 299 (381)
Q Consensus 226 ~i~~fD~~~e~~~~i~~P~~~~~~~-~~~~~L~~~~G~L~~~~~~~~~~~~~iW~l~-----~~W~~~~~i~~~~~~~~~ 299 (381)
.|...|+.+.+.. +|....... .-.....+.++...+...... -+++|.++ .+|.-.+.=| ..
T Consensus 41 ~Vi~idv~t~~~~---l~s~~~ed~d~ita~~l~~d~~~L~~a~rs~--llrv~~L~tgk~irswKa~He~P------vi 109 (775)
T KOG0319|consen 41 RVIIIDVATGSIA---LPSGSNEDEDEITALALTPDEEVLVTASRSQ--LLRVWSLPTGKLIRSWKAIHEAP------VI 109 (775)
T ss_pred eEEEEEccCCcee---cccCCccchhhhheeeecCCccEEEEeeccc--eEEEEEcccchHhHhHhhccCCC------eE
Confidence 5888899887765 333221111 112233344554444444434 68999999 7787655433 45
Q ss_pred EEEEEeCCCEEEEEecccCCccccCCcEEEEEeCCCCce
Q 016891 300 ALAYSKSGGKVLVDKFEYGEDEDINRWELFWYDLQNQGA 338 (381)
Q Consensus 300 ~~~~~~~g~~i~l~~~~~~~~~~~~~~~l~~yd~~t~~~ 338 (381)
.+++.+.|. ++-.+ .....+-++|.+.+..
T Consensus 110 ~ma~~~~g~-LlAtg--------gaD~~v~VWdi~~~~~ 139 (775)
T KOG0319|consen 110 TMAFDPTGT-LLATG--------GADGRVKVWDIKNGYC 139 (775)
T ss_pred EEEEcCCCc-eEEec--------cccceEEEEEeeCCEE
Confidence 566666664 55552 3345688888887777
No 138
>PRK04043 tolB translocation protein TolB; Provisional
Probab=33.63 E-value=4.5e+02 Score=25.41 Aligned_cols=189 Identities=13% Similarity=0.120 Sum_probs=102.0
Q ss_pred CCcEEEEccCCcceeeCCCCCCCCCCceEEEEEeEECCCCCEEEEEEEEEeecCccceEEEEEEcCCCcEEEcccCCCcc
Q 016891 118 ENGIALWNPSTEEHLILPKFWGDLKDFMVVDGFGYDAVNDDYKVVRLVQLVIGNVGYTEIAVYSLRTNSWRRIRVDFPYY 197 (381)
Q Consensus 118 ~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~d~~~~~ykVv~~~~~~~~~~~~~~~~vyss~t~~W~~~~~~~p~~ 197 (381)
...+++.|..|++-..|-..+. .... ..+.| .+..-++.... .+...+++++..++.++.+. ..+..
T Consensus 212 ~~~Iyv~dl~tg~~~~lt~~~g----~~~~--~~~SP-DG~~la~~~~~-----~g~~~Iy~~dl~~g~~~~LT-~~~~~ 278 (419)
T PRK04043 212 KPTLYKYNLYTGKKEKIASSQG----MLVV--SDVSK-DGSKLLLTMAP-----KGQPDIYLYDTNTKTLTQIT-NYPGI 278 (419)
T ss_pred CCEEEEEECCCCcEEEEecCCC----cEEe--eEECC-CCCEEEEEEcc-----CCCcEEEEEECCCCcEEEcc-cCCCc
Confidence 4579999999999888764321 1111 12222 23333222211 12367888898899999887 33321
Q ss_pred eecCCCcEEECC-eeEEEEeeCCCCCCcCEEEEEECCCCeeeeecCCCCCCCCCceeEEEEEECCe-EEEEEecCC----
Q 016891 198 ILHGWDGTFADG-HVHWLVTNNPEDYIENLIIAFNLKSEEFHEVPLPHLENRNDVLVMFVGNFSGC-LYFSCLCNY---- 271 (381)
Q Consensus 198 ~~~~~~~v~~nG-~lYwl~~~~~~~~~~~~i~~fD~~~e~~~~i~~P~~~~~~~~~~~~L~~~~G~-L~~~~~~~~---- 271 (381)
.. .....-+| .||+....... ..|...|+.+.+.+.+-.- .. .... ..-+|+ |.++.....
T Consensus 279 d~--~p~~SPDG~~I~F~Sdr~g~----~~Iy~~dl~~g~~~rlt~~--g~----~~~~-~SPDG~~Ia~~~~~~~~~~~ 345 (419)
T PRK04043 279 DV--NGNFVEDDKRIVFVSDRLGY----PNIFMKKLNSGSVEQVVFH--GK----NNSS-VSTYKNYIVYSSRETNNEFG 345 (419)
T ss_pred cC--ccEECCCCCEEEEEECCCCC----ceEEEEECCCCCeEeCccC--CC----cCce-ECCCCCEEEEEEcCCCcccC
Confidence 00 01222355 68887754322 3688999988777554221 11 1111 223554 444443321
Q ss_pred CceEEEEEEC---CceeEEEEecCCCCCeeEEEEEEeCCCEEEEEecccCCccccCCcEEEEEeCCCCceeeeeEEE
Q 016891 272 PQPVDIWVLM---GCWTKTFSFPRSVGDYVKALAYSKSGGKVLVDKFEYGEDEDINRWELFWYDLQNQGAAADQVTI 345 (381)
Q Consensus 272 ~~~~~iW~l~---~~W~~~~~i~~~~~~~~~~~~~~~~g~~i~l~~~~~~~~~~~~~~~l~~yd~~t~~~~~~~v~~ 345 (381)
....+||.++ .++..+..- +.... ..+.+||+.|++... ......+..++++.+.- ..+..
T Consensus 346 ~~~~~I~v~d~~~g~~~~LT~~----~~~~~-p~~SPDG~~I~f~~~------~~~~~~L~~~~l~g~~~--~~l~~ 409 (419)
T PRK04043 346 KNTFNLYLISTNSDYIRRLTAN----GVNQF-PRFSSDGGSIMFIKY------LGNQSALGIIRLNYNKS--FLFPL 409 (419)
T ss_pred CCCcEEEEEECCCCCeEECCCC----CCcCC-eEECCCCCEEEEEEc------cCCcEEEEEEecCCCee--EEeec
Confidence 1246788887 444432221 11122 345679997877731 01234599999999877 66643
No 139
>PF14157 YmzC: YmzC-like protein; PDB: 3KVP_E.
Probab=32.26 E-value=66 Score=21.68 Aligned_cols=16 Identities=19% Similarity=0.264 Sum_probs=14.0
Q ss_pred cEEEEEeCCCCceeeeeE
Q 016891 326 WELFWYDLQNQGAAADQV 343 (381)
Q Consensus 326 ~~l~~yd~~t~~~~~~~v 343 (381)
-+||.||++||++ +.+
T Consensus 41 iKIfkyd~~tNei--~L~ 56 (63)
T PF14157_consen 41 IKIFKYDEDTNEI--TLK 56 (63)
T ss_dssp EEEEEEETTTTEE--EEE
T ss_pred EEEEEeCCCCCeE--EEE
Confidence 4799999999999 766
No 140
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=32.14 E-value=4.6e+02 Score=25.08 Aligned_cols=106 Identities=15% Similarity=0.118 Sum_probs=51.2
Q ss_pred cCEEEEEECCCCeeeee-cCCCCCCCCCceeEEEEEECCeEEEEEecCCCce--EEEEEEC----CceeEEEEecCCCCC
Q 016891 224 ENLIIAFNLKSEEFHEV-PLPHLENRNDVLVMFVGNFSGCLYFSCLCNYPQP--VDIWVLM----GCWTKTFSFPRSVGD 296 (381)
Q Consensus 224 ~~~i~~fD~~~e~~~~i-~~P~~~~~~~~~~~~L~~~~G~L~~~~~~~~~~~--~~iW~l~----~~W~~~~~i~~~~~~ 296 (381)
.+.|+..|+.+.+.+.+ .-.... ..+...-.+..|.+.|....-.. -+||.++ ..|...... .+.
T Consensus 167 ~~~i~~idl~tG~~~~v~~~~~wl-----gH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~---~~e 238 (386)
T PF14583_consen 167 HCRIFTIDLKTGERKVVFEDTDWL-----GHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRM---EGE 238 (386)
T ss_dssp -EEEEEEETTT--EEEEEEESS-E-----EEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS------TTE
T ss_pred CceEEEEECCCCceeEEEecCccc-----cCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCC---CCc
Confidence 45799999999888776 322211 12333334667777777652212 3689999 333332221 222
Q ss_pred eeEEEEEEeCCCEEEEEecccCCccccCCcEEEEEeCCCCceeeeeE
Q 016891 297 YVKALAYSKSGGKVLVDKFEYGEDEDINRWELFWYDLQNQGAAADQV 343 (381)
Q Consensus 297 ~~~~~~~~~~g~~i~l~~~~~~~~~~~~~~~l~~yd~~t~~~~~~~v 343 (381)
....--..++|.+|++...-.+ ....-|..||++|.+- +.+
T Consensus 239 ~~gHEfw~~DG~~i~y~~~~~~----~~~~~i~~~d~~t~~~--~~~ 279 (386)
T PF14583_consen 239 SVGHEFWVPDGSTIWYDSYTPG----GQDFWIAGYDPDTGER--RRL 279 (386)
T ss_dssp EEEEEEE-TTSS-EEEEEEETT----T--EEEEEE-TTT--E--EEE
T ss_pred ccccccccCCCCEEEEEeecCC----CCceEEEeeCCCCCCc--eEE
Confidence 2222333458887877642121 1234599999999987 666
No 141
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=32.00 E-value=1.1e+02 Score=17.89 Aligned_cols=16 Identities=13% Similarity=0.013 Sum_probs=13.4
Q ss_pred cCCcEEEEEeCCCCce
Q 016891 323 INRWELFWYDLQNQGA 338 (381)
Q Consensus 323 ~~~~~l~~yd~~t~~~ 338 (381)
.....++.+|.+|++.
T Consensus 7 ~~~g~l~AlD~~TG~~ 22 (38)
T PF01011_consen 7 TPDGYLYALDAKTGKV 22 (38)
T ss_dssp TTTSEEEEEETTTTSE
T ss_pred CCCCEEEEEECCCCCE
Confidence 4566799999999987
No 142
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=31.29 E-value=39 Score=33.04 Aligned_cols=93 Identities=12% Similarity=0.080 Sum_probs=52.5
Q ss_pred cEEEcccCCCccee--cCC-CcEEECCeeEEEEeeCCCCCCcCEEEEEECCCCeeeee----cCCCCCCCCCceeEEEEE
Q 016891 186 SWRRIRVDFPYYIL--HGW-DGTFADGHVHWLVTNNPEDYIENLIIAFNLKSEEFHEV----PLPHLENRNDVLVMFVGN 258 (381)
Q Consensus 186 ~W~~~~~~~p~~~~--~~~-~~v~~nG~lYwl~~~~~~~~~~~~i~~fD~~~e~~~~i----~~P~~~~~~~~~~~~L~~ 258 (381)
.||.+. ....... +.. +.|.+..-+-..++..++. ...+-+||..+++|..- +.|+.+.. +=.+
T Consensus 18 rWrrV~-~~tGPvPrpRHGHRAVaikELiviFGGGNEGi--iDELHvYNTatnqWf~PavrGDiPpgcAA------~Gfv 88 (830)
T KOG4152|consen 18 RWRRVQ-QSTGPVPRPRHGHRAVAIKELIVIFGGGNEGI--IDELHVYNTATNQWFAPAVRGDIPPGCAA------FGFV 88 (830)
T ss_pred ceEEEe-cccCCCCCccccchheeeeeeEEEecCCcccc--hhhhhhhccccceeecchhcCCCCCchhh------cceE
Confidence 588877 3322222 222 6777776655555443322 23678999999999764 55665532 2334
Q ss_pred ECC-eEEEEEec--CCCceEEEEEEC---CceeEE
Q 016891 259 FSG-CLYFSCLC--NYPQPVDIWVLM---GCWTKT 287 (381)
Q Consensus 259 ~~G-~L~~~~~~--~~~~~~~iW~l~---~~W~~~ 287 (381)
++| +++++..- .+...-+++.|| .+|.++
T Consensus 89 cdGtrilvFGGMvEYGkYsNdLYELQasRWeWkrl 123 (830)
T KOG4152|consen 89 CDGTRILVFGGMVEYGKYSNDLYELQASRWEWKRL 123 (830)
T ss_pred ecCceEEEEccEeeeccccchHHHhhhhhhhHhhc
Confidence 555 55554432 122356788888 566653
No 143
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=30.64 E-value=4.5e+02 Score=24.51 Aligned_cols=110 Identities=19% Similarity=0.156 Sum_probs=60.1
Q ss_pred CEEEEEECCCCeeeeecCCCCCCCCCceeEEEEEE-CCe-EEEEEecCCCceEEEEEEC-----CceeEEEEecCCCCCe
Q 016891 225 NLIIAFNLKSEEFHEVPLPHLENRNDVLVMFVGNF-SGC-LYFSCLCNYPQPVDIWVLM-----GCWTKTFSFPRSVGDY 297 (381)
Q Consensus 225 ~~i~~fD~~~e~~~~i~~P~~~~~~~~~~~~L~~~-~G~-L~~~~~~~~~~~~~iW~l~-----~~W~~~~~i~~~~~~~ 297 (381)
..+.++|+.+++...+..|............+.-. ++. |++....+..+++.+...+ .++.....-+.... .
T Consensus 158 v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~-~ 236 (353)
T PF00930_consen 158 VSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVD-V 236 (353)
T ss_dssp EEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSS-S
T ss_pred eEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCccee-e
Confidence 36888999988887777663111111233344433 566 8887777765577777666 23333222222221 2
Q ss_pred eEEEEEE-eCCCEEEEEecccCCccccCCcEEEEEeCCCCceeeeeE
Q 016891 298 VKALAYS-KSGGKVLVDKFEYGEDEDINRWELFWYDLQNQGAAADQV 343 (381)
Q Consensus 298 ~~~~~~~-~~g~~i~l~~~~~~~~~~~~~~~l~~yd~~t~~~~~~~v 343 (381)
.....+. ++++.+++.. +.....+|+.|+..++.. +.+
T Consensus 237 ~~~~~~~~~~~~~~l~~s------~~~G~~hly~~~~~~~~~--~~l 275 (353)
T PF00930_consen 237 YDPPHFLGPDGNEFLWIS------ERDGYRHLYLYDLDGGKP--RQL 275 (353)
T ss_dssp SSEEEE-TTTSSEEEEEE------ETTSSEEEEEEETTSSEE--EES
T ss_pred ecccccccCCCCEEEEEE------EcCCCcEEEEEcccccce--ecc
Confidence 2344444 5555465553 123456799999999987 655
No 144
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=30.02 E-value=7.9e+02 Score=27.19 Aligned_cols=117 Identities=12% Similarity=0.037 Sum_probs=62.6
Q ss_pred CCeeEEEEeeCCCCCCcCEEEEEECCCCeeeeecCCCC---CCCC-----C-ceeEEEEEE-CC-eEEEEEecCCCceEE
Q 016891 208 DGHVHWLVTNNPEDYIENLIIAFNLKSEEFHEVPLPHL---ENRN-----D-VLVMFVGNF-SG-CLYFSCLCNYPQPVD 276 (381)
Q Consensus 208 nG~lYwl~~~~~~~~~~~~i~~fD~~~e~~~~i~~P~~---~~~~-----~-~~~~~L~~~-~G-~L~~~~~~~~~~~~~ 276 (381)
+|.+|+...... .|..+|..+.....+..... .... . .....++.. +| .|+++..... .+.
T Consensus 694 ~g~LyVad~~~~------~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~--~Ir 765 (1057)
T PLN02919 694 NEKVYIAMAGQH------QIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESS--SIR 765 (1057)
T ss_pred CCeEEEEECCCC------eEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCC--eEE
Confidence 578888765442 78889988766554321100 0000 0 001123332 44 5887776554 788
Q ss_pred EEEEC-CceeEEEE----ecC---CCC-----------CeeEEEEEEeCCCEEEEEecccCCccccCCcEEEEEeCCCCc
Q 016891 277 IWVLM-GCWTKTFS----FPR---SVG-----------DYVKALAYSKSGGKVLVDKFEYGEDEDINRWELFWYDLQNQG 337 (381)
Q Consensus 277 iW~l~-~~W~~~~~----i~~---~~~-----------~~~~~~~~~~~g~~i~l~~~~~~~~~~~~~~~l~~yd~~t~~ 337 (381)
+|.++ ..-....- .+. .++ ....-+++.++|. ||+.. ...+.|..||++++.
T Consensus 766 v~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~-LYVAD--------s~N~rIrviD~~tg~ 836 (1057)
T PLN02919 766 ALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQ-IYVAD--------SYNHKIKKLDPATKR 836 (1057)
T ss_pred EEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCc-EEEEE--------CCCCEEEEEECCCCe
Confidence 88777 33111110 000 000 1223455567787 88873 455679999999998
Q ss_pred eeeeeE
Q 016891 338 AAADQV 343 (381)
Q Consensus 338 ~~~~~v 343 (381)
+ ..+
T Consensus 837 v--~ti 840 (1057)
T PLN02919 837 V--TTL 840 (1057)
T ss_pred E--EEE
Confidence 8 655
No 145
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=29.77 E-value=4e+02 Score=23.64 Aligned_cols=136 Identities=16% Similarity=0.132 Sum_probs=67.3
Q ss_pred CcEEEEccCCcceeeCCCCCCCCCCceEEEEEeEECCCCCEEEEEEEEEeecCccceEEEEEEcCC----CcEEEcccCC
Q 016891 119 NGIALWNPSTEEHLILPKFWGDLKDFMVVDGFGYDAVNDDYKVVRLVQLVIGNVGYTEIAVYSLRT----NSWRRIRVDF 194 (381)
Q Consensus 119 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~d~~~~~ykVv~~~~~~~~~~~~~~~~vyss~t----~~W~~~~~~~ 194 (381)
..-.++||.|++++.|+......+. +-.+.+ .+ +++.... +..+...+.+|+.-+ ..|.+....+
T Consensus 46 a~s~~yD~~tn~~rpl~v~td~FCS-----gg~~L~-dG--~ll~tGG---~~~G~~~ir~~~p~~~~~~~~w~e~~~~m 114 (243)
T PF07250_consen 46 AHSVEYDPNTNTFRPLTVQTDTFCS-----GGAFLP-DG--RLLQTGG---DNDGNKAIRIFTPCTSDGTCDWTESPNDM 114 (243)
T ss_pred EEEEEEecCCCcEEeccCCCCCccc-----CcCCCC-CC--CEEEeCC---CCccccceEEEecCCCCCCCCceECcccc
Confidence 3468999999999998755322211 111111 12 3332221 111335566777654 6798876333
Q ss_pred CcceecCCCcEEECCeeEEEEeeCCCCCCcCEEEEEECCCCe--eeeecCCCCC--CCCCceeEEEEEE-CCeEEEEEec
Q 016891 195 PYYILHGWDGTFADGHVHWLVTNNPEDYIENLIIAFNLKSEE--FHEVPLPHLE--NRNDVLVMFVGNF-SGCLYFSCLC 269 (381)
Q Consensus 195 p~~~~~~~~~v~~nG~lYwl~~~~~~~~~~~~i~~fD~~~e~--~~~i~~P~~~--~~~~~~~~~L~~~-~G~L~~~~~~ 269 (381)
.....+...-+.-||.+..+++.... ...-++..... ...+++.... .......+++-.+ +|+|++....
T Consensus 115 ~~~RWYpT~~~L~DG~vlIvGG~~~~-----t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~ 189 (243)
T PF07250_consen 115 QSGRWYPTATTLPDGRVLIVGGSNNP-----TYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANR 189 (243)
T ss_pred cCCCccccceECCCCCEEEEeCcCCC-----cccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcC
Confidence 33222222444568888888876631 12222221111 1111111111 1112345666666 7999887775
Q ss_pred C
Q 016891 270 N 270 (381)
Q Consensus 270 ~ 270 (381)
+
T Consensus 190 ~ 190 (243)
T PF07250_consen 190 G 190 (243)
T ss_pred C
Confidence 4
No 146
>PRK04922 tolB translocation protein TolB; Provisional
Probab=29.15 E-value=5.3e+02 Score=24.85 Aligned_cols=191 Identities=12% Similarity=0.034 Sum_probs=91.6
Q ss_pred CCcEEEEccCCcceeeCCCCCCCCCCceEEEEEeEECCCCCEEEEEEEEEeecCccceEEEEEEcCCCcEEEcccCCCcc
Q 016891 118 ENGIALWNPSTEEHLILPKFWGDLKDFMVVDGFGYDAVNDDYKVVRLVQLVIGNVGYTEIAVYSLRTNSWRRIRVDFPYY 197 (381)
Q Consensus 118 ~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~d~~~~~ykVv~~~~~~~~~~~~~~~~vyss~t~~W~~~~~~~p~~ 197 (381)
...++++|..+++...+...+.. .. ...+.+. +. +++.... ..+...+.+++..++.-+.+. .....
T Consensus 227 ~~~l~~~dl~~g~~~~l~~~~g~----~~--~~~~SpD-G~-~l~~~~s----~~g~~~Iy~~d~~~g~~~~lt-~~~~~ 293 (433)
T PRK04922 227 RSAIYVQDLATGQRELVASFRGI----NG--APSFSPD-GR-RLALTLS----RDGNPEIYVMDLGSRQLTRLT-NHFGI 293 (433)
T ss_pred CcEEEEEECCCCCEEEeccCCCC----cc--CceECCC-CC-EEEEEEe----CCCCceEEEEECCCCCeEECc-cCCCC
Confidence 34689999999887776533211 11 1222332 22 2222211 112257888888888766655 21110
Q ss_pred eecCCCcEEECC-eeEEEEeeCCCCCCcCEEEEEECCCCeeeeecCCCCCCCCCceeEEEEEECC-eEEEEEecCCCceE
Q 016891 198 ILHGWDGTFADG-HVHWLVTNNPEDYIENLIIAFNLKSEEFHEVPLPHLENRNDVLVMFVGNFSG-CLYFSCLCNYPQPV 275 (381)
Q Consensus 198 ~~~~~~~v~~nG-~lYwl~~~~~~~~~~~~i~~fD~~~e~~~~i~~P~~~~~~~~~~~~L~~~~G-~L~~~~~~~~~~~~ 275 (381)
. ......-+| .+++....... ..|..+|+.+.+.+.+...... ...+... -+| .+++.....+..++
T Consensus 294 ~--~~~~~spDG~~l~f~sd~~g~----~~iy~~dl~~g~~~~lt~~g~~----~~~~~~S-pDG~~Ia~~~~~~~~~~I 362 (433)
T PRK04922 294 D--TEPTWAPDGKSIYFTSDRGGR----PQIYRVAASGGSAERLTFQGNY----NARASVS-PDGKKIAMVHGSGGQYRI 362 (433)
T ss_pred c--cceEECCCCCEEEEEECCCCC----ceEEEEECCCCCeEEeecCCCC----ccCEEEC-CCCCEEEEEECCCCceeE
Confidence 0 001112245 35555432211 2577888887776655322111 1122222 245 45554443332234
Q ss_pred EEEEEC-CceeEEEEecCCCCCeeEEEEEEeCCCEEEEEecccCCccccCCcEEEEEeCCCCceeeeeEEE
Q 016891 276 DIWVLM-GCWTKTFSFPRSVGDYVKALAYSKSGGKVLVDKFEYGEDEDINRWELFWYDLQNQGAAADQVTI 345 (381)
Q Consensus 276 ~iW~l~-~~W~~~~~i~~~~~~~~~~~~~~~~g~~i~l~~~~~~~~~~~~~~~l~~yd~~t~~~~~~~v~~ 345 (381)
.+|.++ .... .+.... .... ..+.++|..|++... ......|+.+|++++.. +++..
T Consensus 363 ~v~d~~~g~~~---~Lt~~~-~~~~-p~~spdG~~i~~~s~------~~g~~~L~~~~~~g~~~--~~l~~ 420 (433)
T PRK04922 363 AVMDLSTGSVR---TLTPGS-LDES-PSFAPNGSMVLYATR------EGGRGVLAAVSTDGRVR--QRLVS 420 (433)
T ss_pred EEEECCCCCeE---ECCCCC-CCCC-ceECCCCCEEEEEEe------cCCceEEEEEECCCCce--EEccc
Confidence 444444 4433 222111 1112 256778887777631 01234699999988777 77743
No 147
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=29.14 E-value=2.7e+02 Score=24.11 Aligned_cols=80 Identities=13% Similarity=0.202 Sum_probs=45.5
Q ss_pred CeeEEcccCcEEEEeeCCCcEEEEccCCcceeeCCCCCCCC-C---------CceEEEEEeEECCCCCEEEEEEEEEeec
Q 016891 101 RTPIIDSCNGLIAFKNDENGIALWNPSTEEHLILPKFWGDL-K---------DFMVVDGFGYDAVNDDYKVVRLVQLVIG 170 (381)
Q Consensus 101 ~~~~~~s~~GLl~~~~~~~~~~V~NP~T~~~~~LP~~~~~~-~---------~~~~~~~~~~d~~~~~ykVv~~~~~~~~ 170 (381)
....+.+++..|++-+....++|||-.+++.. +++.+..+ . .......+..+ ..+.=+|.+..
T Consensus 14 ~~~~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~-~~~~Si~pll~~~~~~~~~~~~~i~~~~lt--~~G~PiV~lsn---- 86 (219)
T PF07569_consen 14 PVSFLECNGSYLLAITSSGLLYVWNLKKGKAV-LPPVSIAPLLNSSPVSDKSSSPNITSCSLT--SNGVPIVTLSN---- 86 (219)
T ss_pred ceEEEEeCCCEEEEEeCCCeEEEEECCCCeec-cCCccHHHHhcccccccCCCCCcEEEEEEc--CCCCEEEEEeC----
Confidence 34567777777766666778999998887754 34311110 0 01111222222 23333444422
Q ss_pred CccceEEEEEEcCCCcEEEcc
Q 016891 171 NVGYTEIAVYSLRTNSWRRIR 191 (381)
Q Consensus 171 ~~~~~~~~vyss~t~~W~~~~ 191 (381)
...++|+..-++|-.+.
T Consensus 87 ----g~~y~y~~~L~~W~~vs 103 (219)
T PF07569_consen 87 ----GDSYSYSPDLGCWIRVS 103 (219)
T ss_pred ----CCEEEeccccceeEEec
Confidence 45789999999999987
No 148
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=29.06 E-value=4.8e+02 Score=24.39 Aligned_cols=155 Identities=14% Similarity=0.162 Sum_probs=79.2
Q ss_pred eEEEEEEcCCCcEEEcccCCCcc-eecCCCcEEE-CCeeEEEEeeCCCCCCcCEEEEEECCCCeeeee----cCCCCCCC
Q 016891 175 TEIAVYSLRTNSWRRIRVDFPYY-ILHGWDGTFA-DGHVHWLVTNNPEDYIENLIIAFNLKSEEFHEV----PLPHLENR 248 (381)
Q Consensus 175 ~~~~vyss~t~~W~~~~~~~p~~-~~~~~~~v~~-nG~lYwl~~~~~~~~~~~~i~~fD~~~e~~~~i----~~P~~~~~ 248 (381)
.++.+|+..++.=.... ..... ....+.-+++ ||++-.+..+-.. ...+..||....++..+ -+|.+...
T Consensus 167 Dri~~y~~~dg~L~~~~-~~~v~~G~GPRHi~FHpn~k~aY~v~EL~s---tV~v~~y~~~~g~~~~lQ~i~tlP~dF~g 242 (346)
T COG2706 167 DRIFLYDLDDGKLTPAD-PAEVKPGAGPRHIVFHPNGKYAYLVNELNS---TVDVLEYNPAVGKFEELQTIDTLPEDFTG 242 (346)
T ss_pred ceEEEEEcccCcccccc-ccccCCCCCcceEEEcCCCcEEEEEeccCC---EEEEEEEcCCCceEEEeeeeccCccccCC
Confidence 67899999987766555 11110 0111122332 5654444433321 12455555555777766 45766544
Q ss_pred CCceeEEEE-EECCeEEEEEecCCCceEEEEEEC---CceeEEEEecCCCCCeeEEEEEEeCCCEEEEEecccCCccccC
Q 016891 249 NDVLVMFVG-NFSGCLYFSCLCNYPQPVDIWVLM---GCWTKTFSFPRSVGDYVKALAYSKSGGKVLVDKFEYGEDEDIN 324 (381)
Q Consensus 249 ~~~~~~~L~-~~~G~L~~~~~~~~~~~~~iW~l~---~~W~~~~~i~~~~~~~~~~~~~~~~g~~i~l~~~~~~~~~~~~ 324 (381)
.. +...+- .-+|+..+++-+... .|.+.... ..=..+...+ .-+...+-+.+.+.|+ ++++.+|- .+
T Consensus 243 ~~-~~aaIhis~dGrFLYasNRg~d-sI~~f~V~~~~g~L~~~~~~~-teg~~PR~F~i~~~g~-~Liaa~q~-----sd 313 (346)
T COG2706 243 TN-WAAAIHISPDGRFLYASNRGHD-SIAVFSVDPDGGKLELVGITP-TEGQFPRDFNINPSGR-FLIAANQK-----SD 313 (346)
T ss_pred CC-ceeEEEECCCCCEEEEecCCCC-eEEEEEEcCCCCEEEEEEEec-cCCcCCccceeCCCCC-EEEEEccC-----CC
Confidence 32 222222 346776666655432 55555555 2211122222 1223345566667777 55554322 33
Q ss_pred CcEEEEEeCCCCceeeeeEE
Q 016891 325 RWELFWYDLQNQGAAADQVT 344 (381)
Q Consensus 325 ~~~l~~yd~~t~~~~~~~v~ 344 (381)
.-.+|.-|.+|+++ .++.
T Consensus 314 ~i~vf~~d~~TG~L--~~~~ 331 (346)
T COG2706 314 NITVFERDKETGRL--TLLG 331 (346)
T ss_pred cEEEEEEcCCCceE--Eecc
Confidence 44688889999999 7773
No 149
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=27.74 E-value=5.7e+02 Score=24.79 Aligned_cols=100 Identities=14% Similarity=0.287 Sum_probs=57.5
Q ss_pred eEEEEEEcCCCcEEEcccCCCcceecCC-CcEEECCeeEEEEeeCCCCCCcCEEEEEECCC-CeeeeecCCCCCCCCCce
Q 016891 175 TEIAVYSLRTNSWRRIRVDFPYYILHGW-DGTFADGHVHWLVTNNPEDYIENLIIAFNLKS-EEFHEVPLPHLENRNDVL 252 (381)
Q Consensus 175 ~~~~vyss~t~~W~~~~~~~p~~~~~~~-~~v~~nG~lYwl~~~~~~~~~~~~i~~fD~~~-e~~~~i~~P~~~~~~~~~ 252 (381)
-.+.||+.++.. .+. .+|. .... ..+.+..+=||+....+.. .|..+|++. +.|..+.+|....-
T Consensus 369 ~~vkiwdlks~~--~~a-~Fpg--ht~~vk~i~FsENGY~Lat~add~----~V~lwDLRKl~n~kt~~l~~~~~v---- 435 (506)
T KOG0289|consen 369 GVVKIWDLKSQT--NVA-KFPG--HTGPVKAISFSENGYWLATAADDG----SVKLWDLRKLKNFKTIQLDEKKEV---- 435 (506)
T ss_pred ceEEEEEcCCcc--ccc-cCCC--CCCceeEEEeccCceEEEEEecCC----eEEEEEehhhcccceeeccccccc----
Confidence 456677766655 344 4443 1111 5667777778998655433 699999986 44555666653211
Q ss_pred eEEEEEECCeEEEEEecCCCceEEEEEEC---CceeEEEEec
Q 016891 253 VMFVGNFSGCLYFSCLCNYPQPVDIWVLM---GCWTKTFSFP 291 (381)
Q Consensus 253 ~~~L~~~~G~L~~~~~~~~~~~~~iW~l~---~~W~~~~~i~ 291 (381)
.-.-....|+...+. .. .+.|+..+ .+|.++....
T Consensus 436 ~s~~fD~SGt~L~~~--g~--~l~Vy~~~k~~k~W~~~~~~~ 473 (506)
T KOG0289|consen 436 NSLSFDQSGTYLGIA--GS--DLQVYICKKKTKSWTEIKELA 473 (506)
T ss_pred eeEEEcCCCCeEEee--cc--eeEEEEEecccccceeeehhh
Confidence 111112235544444 22 56777666 8999988776
No 150
>PRK00178 tolB translocation protein TolB; Provisional
Probab=27.68 E-value=5.5e+02 Score=24.57 Aligned_cols=143 Identities=18% Similarity=0.177 Sum_probs=74.4
Q ss_pred eEEEEEEcCCCcEEEcccCCCcceecCCCcEEECC-eeEEEEeeCCCCCCcCEEEEEECCCCeeeeecCCCCCCCCCcee
Q 016891 175 TEIAVYSLRTNSWRRIRVDFPYYILHGWDGTFADG-HVHWLVTNNPEDYIENLIIAFNLKSEEFHEVPLPHLENRNDVLV 253 (381)
Q Consensus 175 ~~~~vyss~t~~W~~~~~~~p~~~~~~~~~v~~nG-~lYwl~~~~~~~~~~~~i~~fD~~~e~~~~i~~P~~~~~~~~~~ 253 (381)
..+.+++..++.-+.+. ..+.... .....-+| .+++...... ...|..+|+.+.+.+.+.-..... ..
T Consensus 223 ~~l~~~~l~~g~~~~l~-~~~g~~~--~~~~SpDG~~la~~~~~~g----~~~Iy~~d~~~~~~~~lt~~~~~~----~~ 291 (430)
T PRK00178 223 PRIFVQNLDTGRREQIT-NFEGLNG--APAWSPDGSKLAFVLSKDG----NPEIYVMDLASRQLSRVTNHPAID----TE 291 (430)
T ss_pred CEEEEEECCCCCEEEcc-CCCCCcC--CeEECCCCCEEEEEEccCC----CceEEEEECCCCCeEEcccCCCCc----CC
Confidence 56888888888777665 3321110 01112245 3444433221 136888999988776552211111 11
Q ss_pred EEEEEECCe-EEEEEecCCCceEEEEEEC---CceeEEEEecCCCCCeeEEEEEEeCCCEEEEEecccCCccccCCcEEE
Q 016891 254 MFVGNFSGC-LYFSCLCNYPQPVDIWVLM---GCWTKTFSFPRSVGDYVKALAYSKSGGKVLVDKFEYGEDEDINRWELF 329 (381)
Q Consensus 254 ~~L~~~~G~-L~~~~~~~~~~~~~iW~l~---~~W~~~~~i~~~~~~~~~~~~~~~~g~~i~l~~~~~~~~~~~~~~~l~ 329 (381)
+.. .-+|+ |++.....+ ..+||.++ .++.++.. . +.......+.++|+.|++.... .....|+
T Consensus 292 ~~~-spDg~~i~f~s~~~g--~~~iy~~d~~~g~~~~lt~-~---~~~~~~~~~Spdg~~i~~~~~~------~~~~~l~ 358 (430)
T PRK00178 292 PFW-GKDGRTLYFTSDRGG--KPQIYKVNVNGGRAERVTF-V---GNYNARPRLSADGKTLVMVHRQ------DGNFHVA 358 (430)
T ss_pred eEE-CCCCCEEEEEECCCC--CceEEEEECCCCCEEEeec-C---CCCccceEECCCCCEEEEEEcc------CCceEEE
Confidence 221 22554 555433333 44666665 55544321 1 1112234556788878777310 1234699
Q ss_pred EEeCCCCceeeeeE
Q 016891 330 WYDLQNQGAAADQV 343 (381)
Q Consensus 330 ~yd~~t~~~~~~~v 343 (381)
.+|+++++. +.+
T Consensus 359 ~~dl~tg~~--~~l 370 (430)
T PRK00178 359 AQDLQRGSV--RIL 370 (430)
T ss_pred EEECCCCCE--EEc
Confidence 999999988 776
No 151
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=27.33 E-value=1.4e+02 Score=30.74 Aligned_cols=49 Identities=20% Similarity=0.371 Sum_probs=36.0
Q ss_pred eEEEEEEC----CceeEEEEecCCCCCeeEEEEEEeCCCEEEEEecccCCccccCCcEEEEEeCCCCce
Q 016891 274 PVDIWVLM----GCWTKTFSFPRSVGDYVKALAYSKSGGKVLVDKFEYGEDEDINRWELFWYDLQNQGA 338 (381)
Q Consensus 274 ~~~iW~l~----~~W~~~~~i~~~~~~~~~~~~~~~~g~~i~l~~~~~~~~~~~~~~~l~~yd~~t~~~ 338 (381)
+++||... ..|.... .+...+++.++|+..++- .-.....+|+.+..++
T Consensus 433 KvRiWsI~d~~Vv~W~Dl~-------~lITAvcy~PdGk~avIG---------t~~G~C~fY~t~~lk~ 485 (712)
T KOG0283|consen 433 KVRLWSISDKKVVDWNDLR-------DLITAVCYSPDGKGAVIG---------TFNGYCRFYDTEGLKL 485 (712)
T ss_pred ceEEeecCcCeeEeehhhh-------hhheeEEeccCCceEEEE---------EeccEEEEEEccCCeE
Confidence 78888776 4566444 456888889999966666 3345688999998888
No 152
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=27.11 E-value=3.5e+02 Score=26.23 Aligned_cols=102 Identities=19% Similarity=0.240 Sum_probs=55.8
Q ss_pred EEEEEECCCCeeeee-cCCCCCCCCCceeEEEEEECCe-EEEEEecCCCceEEEEEEC---CceeEEEEecCCCCCeeEE
Q 016891 226 LIIAFNLKSEEFHEV-PLPHLENRNDVLVMFVGNFSGC-LYFSCLCNYPQPVDIWVLM---GCWTKTFSFPRSVGDYVKA 300 (381)
Q Consensus 226 ~i~~fD~~~e~~~~i-~~P~~~~~~~~~~~~L~~~~G~-L~~~~~~~~~~~~~iW~l~---~~W~~~~~i~~~~~~~~~~ 300 (381)
.+...|+.+..-..+ ..+... ..+... -+|+ |.+....++ ..+||.++ .. +.++....+....|
T Consensus 219 ~i~~~~l~~g~~~~i~~~~g~~-----~~P~fs-pDG~~l~f~~~rdg--~~~iy~~dl~~~~---~~~Lt~~~gi~~~P 287 (425)
T COG0823 219 RIYYLDLNTGKRPVILNFNGNN-----GAPAFS-PDGSKLAFSSSRDG--SPDIYLMDLDGKN---LPRLTNGFGINTSP 287 (425)
T ss_pred eEEEEeccCCccceeeccCCcc-----CCccCC-CCCCEEEEEECCCC--CccEEEEcCCCCc---ceecccCCccccCc
Confidence 566777766544333 433221 112222 3454 444444443 78999999 22 22233223222233
Q ss_pred EEEEeCCCEEEEEecccCCccccCCcEEEEEeCCCCceeeeeEEEec
Q 016891 301 LAYSKSGGKVLVDKFEYGEDEDINRWELFWYDLQNQGAAADQVTIHG 347 (381)
Q Consensus 301 ~~~~~~g~~i~l~~~~~~~~~~~~~~~l~~yd~~t~~~~~~~v~~~~ 347 (381)
. +.++|.+|++.+ +. .....|+.||+++++. +++...+
T Consensus 288 s-~spdG~~ivf~S-----dr-~G~p~I~~~~~~g~~~--~riT~~~ 325 (425)
T COG0823 288 S-WSPDGSKIVFTS-----DR-GGRPQIYLYDLEGSQV--TRLTFSG 325 (425)
T ss_pred c-CCCCCCEEEEEe-----CC-CCCcceEEECCCCCce--eEeeccC
Confidence 2 246888899984 11 2234699999999999 8885543
No 153
>PTZ00334 trans-sialidase; Provisional
Probab=27.00 E-value=4.1e+02 Score=28.05 Aligned_cols=84 Identities=15% Similarity=0.164 Sum_probs=53.6
Q ss_pred CcEEE-CCeeEEEEeeCCCCCCcCEEEEEECCCCeeeeec-CCCCCCCCCceeEEEEEEC-CeEEEEEecCCCceEEEEE
Q 016891 203 DGTFA-DGHVHWLVTNNPEDYIENLIIAFNLKSEEFHEVP-LPHLENRNDVLVMFVGNFS-GCLYFSCLCNYPQPVDIWV 279 (381)
Q Consensus 203 ~~v~~-nG~lYwl~~~~~~~~~~~~i~~fD~~~e~~~~i~-~P~~~~~~~~~~~~L~~~~-G~L~~~~~~~~~~~~~iW~ 279 (381)
++|.. ||.|-+-............++.|-..+..|..-. .|+.. ...+.+++-+ |+|.|+..|++. +-.|+.
T Consensus 264 SGI~medGTLVFPv~a~~~~g~~vslIiYS~d~g~W~ls~g~s~~g----C~~P~I~EWe~gkLlM~t~C~dG-~RrVYE 338 (780)
T PTZ00334 264 SGVQMKDGTLVFPVEGTKKDGKAVSLIIYSSATESGNLSKGMSADG----CSDPSVVEWKEGKLMMMTACDDG-RRRVYE 338 (780)
T ss_pred CeEEecCCeEEEEEEEEcCCCCEEEEEEEecCCCCeEEcCCCCCCC----CCCCEEEEEcCCeEEEEEEeCCC-CEEEEE
Confidence 66665 7888776543322233456788877777786542 33332 2467899995 999999999765 456666
Q ss_pred EC---CceeE-EEEec
Q 016891 280 LM---GCWTK-TFSFP 291 (381)
Q Consensus 280 l~---~~W~~-~~~i~ 291 (381)
=. ..|.. +-+++
T Consensus 339 S~DmG~tWtEAlGTLs 354 (780)
T PTZ00334 339 SGDKGDSWTEALGTLS 354 (780)
T ss_pred ECCCCCChhhCCCccc
Confidence 54 77876 33443
No 154
>PRK02889 tolB translocation protein TolB; Provisional
Probab=26.98 E-value=5.8e+02 Score=24.57 Aligned_cols=113 Identities=7% Similarity=0.031 Sum_probs=0.0
Q ss_pred CCeeEEEEeeCCCCCCcCEEEEEECCCCeeeee-cCCCCCCCCCceeEEEEEECCeEEEEEecCCCceEEEEEEC---Cc
Q 016891 208 DGHVHWLVTNNPEDYIENLIIAFNLKSEEFHEV-PLPHLENRNDVLVMFVGNFSGCLYFSCLCNYPQPVDIWVLM---GC 283 (381)
Q Consensus 208 nG~lYwl~~~~~~~~~~~~i~~fD~~~e~~~~i-~~P~~~~~~~~~~~~L~~~~G~L~~~~~~~~~~~~~iW~l~---~~ 283 (381)
+..|++........ .|..+|+.+.+-..+ ..+... ..+...--+.+|.+....++ ..+||.++ ..
T Consensus 207 G~~la~~s~~~~~~----~I~~~dl~~g~~~~l~~~~g~~-----~~~~~SPDG~~la~~~~~~g--~~~Iy~~d~~~~~ 275 (427)
T PRK02889 207 GTKLAYVSFESKKP----VVYVHDLATGRRRVVANFKGSN-----SAPAWSPDGRTLAVALSRDG--NSQIYTVNADGSG 275 (427)
T ss_pred CCEEEEEEccCCCc----EEEEEECCCCCEEEeecCCCCc-----cceEECCCCCEEEEEEccCC--CceEEEEECCCCC
Q ss_pred eeEEEEecCCCCCeeEEEEEEeCCCEEEEEecccCCccccCCcEEEEEeCCCCceeeeeE
Q 016891 284 WTKTFSFPRSVGDYVKALAYSKSGGKVLVDKFEYGEDEDINRWELFWYDLQNQGAAADQV 343 (381)
Q Consensus 284 W~~~~~i~~~~~~~~~~~~~~~~g~~i~l~~~~~~~~~~~~~~~l~~yd~~t~~~~~~~v 343 (381)
..++..-. ....-..+.++|..|++. ........++.+|+++++. +.+
T Consensus 276 ~~~lt~~~----~~~~~~~wSpDG~~l~f~------s~~~g~~~Iy~~~~~~g~~--~~l 323 (427)
T PRK02889 276 LRRLTQSS----GIDTEPFFSPDGRSIYFT------SDRGGAPQIYRMPASGGAA--QRV 323 (427)
T ss_pred cEECCCCC----CCCcCeEEcCCCCEEEEE------ecCCCCcEEEEEECCCCce--EEE
No 155
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=26.92 E-value=5e+02 Score=23.88 Aligned_cols=92 Identities=12% Similarity=0.055 Sum_probs=50.0
Q ss_pred EEEEEECCCCeeeeecCCCCCCCCCceeEEEEEECCeE--EEEEecCCCceEEEEEECCceeEEEEecCCCCCeeEEEEE
Q 016891 226 LIIAFNLKSEEFHEVPLPHLENRNDVLVMFVGNFSGCL--YFSCLCNYPQPVDIWVLMGCWTKTFSFPRSVGDYVKALAY 303 (381)
Q Consensus 226 ~i~~fD~~~e~~~~i~~P~~~~~~~~~~~~L~~~~G~L--~~~~~~~~~~~~~iW~l~~~W~~~~~i~~~~~~~~~~~~~ 303 (381)
.+-.+|+.++.-+.+-+-... ...+--.+|.+ |++...-+. .+..|-+... ..+.++.. + .++.++
T Consensus 95 ~~k~wDL~S~Q~~~v~~Hd~p------vkt~~wv~~~~~~cl~TGSWDK-TlKfWD~R~~-~pv~t~~L-P---eRvYa~ 162 (347)
T KOG0647|consen 95 QAKLWDLASGQVSQVAAHDAP------VKTCHWVPGMNYQCLVTGSWDK-TLKFWDTRSS-NPVATLQL-P---ERVYAA 162 (347)
T ss_pred ceEEEEccCCCeeeeeecccc------eeEEEEecCCCcceeEeccccc-ceeecccCCC-Ceeeeeec-c---ceeeeh
Confidence 678899998876666332211 11222234444 666665543 7888888721 23333331 1 233343
Q ss_pred EeCCCEEEEEecccCCccccCCcEEEEEeCCCCce
Q 016891 304 SKSGGKVLVDKFEYGEDEDINRWELFWYDLQNQGA 338 (381)
Q Consensus 304 ~~~g~~i~l~~~~~~~~~~~~~~~l~~yd~~t~~~ 338 (381)
.-....+++. ..++.|.+|||+....
T Consensus 163 Dv~~pm~vVa---------ta~r~i~vynL~n~~t 188 (347)
T KOG0647|consen 163 DVLYPMAVVA---------TAERHIAVYNLENPPT 188 (347)
T ss_pred hccCceeEEE---------ecCCcEEEEEcCCCcc
Confidence 3334434444 4567799999976655
No 156
>PF13854 Kelch_5: Kelch motif
Probab=26.16 E-value=1.3e+02 Score=18.09 Aligned_cols=32 Identities=9% Similarity=0.106 Sum_probs=20.6
Q ss_pred CcEEECCeeEEEEeeCC-CCCCcCEEEEEECCC
Q 016891 203 DGTFADGHVHWLVTNNP-EDYIENLIIAFNLKS 234 (381)
Q Consensus 203 ~~v~~nG~lYwl~~~~~-~~~~~~~i~~fD~~~ 234 (381)
+.+.+++.+|..++... .......+..+|+.+
T Consensus 9 s~~~~~~~iyi~GG~~~~~~~~~~d~~~l~l~s 41 (42)
T PF13854_consen 9 SAVVVGNNIYIFGGYSGNNNSYSNDLYVLDLPS 41 (42)
T ss_pred EEEEECCEEEEEcCccCCCCCEECcEEEEECCC
Confidence 67888999999987662 222223466666654
No 157
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=26.05 E-value=4.9e+02 Score=25.85 Aligned_cols=36 Identities=17% Similarity=0.291 Sum_probs=26.4
Q ss_pred eeEEEEEEeCCCEEEEEecccCCccccCCcEEEEEeCCCCceeeeeE
Q 016891 297 YVKALAYSKSGGKVLVDKFEYGEDEDINRWELFWYDLQNQGAAADQV 343 (381)
Q Consensus 297 ~~~~~~~~~~g~~i~l~~~~~~~~~~~~~~~l~~yd~~t~~~~~~~v 343 (381)
....+++.+++.++... .-.+++..||.++++. +.-
T Consensus 489 ~iT~vaySpd~~yla~~---------Da~rkvv~yd~~s~~~--~~~ 524 (603)
T KOG0318|consen 489 AITDVAYSPDGAYLAAG---------DASRKVVLYDVASREV--KTN 524 (603)
T ss_pred CceEEEECCCCcEEEEe---------ccCCcEEEEEcccCce--ecc
Confidence 45667888888844444 4567899999999988 554
No 158
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=24.90 E-value=6.9e+02 Score=24.80 Aligned_cols=79 Identities=15% Similarity=0.208 Sum_probs=49.1
Q ss_pred eEEEEEEC-CceeEEEEec-CCCCCeeEEEEEEeCCCEEEEEecccCCccccCCcEEEEEeCCCCceeeeeEEEecCCCC
Q 016891 274 PVDIWVLM-GCWTKTFSFP-RSVGDYVKALAYSKSGGKVLVDKFEYGEDEDINRWELFWYDLQNQGAAADQVTIHGVPQG 351 (381)
Q Consensus 274 ~~~iW~l~-~~W~~~~~i~-~~~~~~~~~~~~~~~g~~i~l~~~~~~~~~~~~~~~l~~yd~~t~~~~~~~v~~~~~~~~ 351 (381)
++..|.++ .+-.+..-+- ..-......+++.++|+ ++-. .....+.+|+..+++.+ +.+...+..-+
T Consensus 223 H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engd-viTg---------DS~G~i~Iw~~~~~~~~-k~~~aH~ggv~ 291 (626)
T KOG2106|consen 223 HLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGD-VITG---------DSGGNILIWSKGTNRIS-KQVHAHDGGVF 291 (626)
T ss_pred eEEEEEccCCceEEEeeccccccceEEEEEEEcCCCC-EEee---------cCCceEEEEeCCCceEE-eEeeecCCceE
Confidence 88899888 6655544443 21123455567778898 6655 55667999999999994 55543332222
Q ss_pred ceeEEEEeeceec
Q 016891 352 CRDTIVCVDSLVS 364 (381)
Q Consensus 352 ~~~~~~y~~sl~~ 364 (381)
.-+..=..+|++
T Consensus 292 -~L~~lr~GtllS 303 (626)
T KOG2106|consen 292 -SLCMLRDGTLLS 303 (626)
T ss_pred -EEEEecCccEee
Confidence 224444566666
No 159
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=24.76 E-value=7.7e+02 Score=25.30 Aligned_cols=65 Identities=14% Similarity=0.234 Sum_probs=36.2
Q ss_pred CCeEEEEEecCCCceEEEEEEC-C------ceeEEEEecCCCCCeeEEEEEEeCCCEEEEEecccCCccccCCcEEEEEe
Q 016891 260 SGCLYFSCLCNYPQPVDIWVLM-G------CWTKTFSFPRSVGDYVKALAYSKSGGKVLVDKFEYGEDEDINRWELFWYD 332 (381)
Q Consensus 260 ~G~L~~~~~~~~~~~~~iW~l~-~------~W~~~~~i~~~~~~~~~~~~~~~~g~~i~l~~~~~~~~~~~~~~~l~~yd 332 (381)
..+|.+.-... ..++|.+. . .-.++..+..--.....+.++.++|..|.+.. ..+.+++-..
T Consensus 343 ~~~L~~~w~~h---~v~lwrlGS~~~~g~~~~~~Llkl~~k~~~nIs~~aiSPdg~~Ia~st--------~~~~~iy~L~ 411 (691)
T KOG2048|consen 343 ENRLLVLWKAH---GVDLWRLGSVILQGEYNYIHLLKLFTKEKENISCAAISPDGNLIAIST--------VSRTKIYRLQ 411 (691)
T ss_pred cceEEEEeccc---cccceeccCcccccccChhhheeeecCCccceeeeccCCCCCEEEEee--------ccceEEEEec
Confidence 45666655433 46788887 1 22233333310114567788889999777662 2344555555
Q ss_pred CCC
Q 016891 333 LQN 335 (381)
Q Consensus 333 ~~t 335 (381)
++.
T Consensus 412 ~~~ 414 (691)
T KOG2048|consen 412 PDP 414 (691)
T ss_pred cCc
Confidence 555
No 160
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=24.73 E-value=6.1e+02 Score=24.14 Aligned_cols=55 Identities=13% Similarity=0.246 Sum_probs=29.3
Q ss_pred eEEEEEEcCCC--cEEEcccCCCc-ce---ecCCCcEEECC--eeEEEEeeCCCCCCcCEEEEEECCC
Q 016891 175 TEIAVYSLRTN--SWRRIRVDFPY-YI---LHGWDGTFADG--HVHWLVTNNPEDYIENLIIAFNLKS 234 (381)
Q Consensus 175 ~~~~vyss~t~--~W~~~~~~~p~-~~---~~~~~~v~~nG--~lYwl~~~~~~~~~~~~i~~fD~~~ 234 (381)
..++|++++.+ .|+...+...+ .+ .+.....++.| .-.+......+ .+-.||...
T Consensus 173 n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~h-----qvR~YDt~~ 235 (412)
T KOG3881|consen 173 NELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYH-----QVRLYDTRH 235 (412)
T ss_pred cceeeeecccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecce-----eEEEecCcc
Confidence 67889998875 68876521111 11 12226667788 55555544332 344555543
No 161
>PRK03629 tolB translocation protein TolB; Provisional
Probab=24.62 E-value=6.4e+02 Score=24.31 Aligned_cols=143 Identities=13% Similarity=0.097 Sum_probs=73.4
Q ss_pred eEEEEEEcCCCcEEEcccCCCcceecCCCcEEECC-eeEEEEeeCCCCCCcCEEEEEECCCCeeeeec-CCCCCCCCCce
Q 016891 175 TEIAVYSLRTNSWRRIRVDFPYYILHGWDGTFADG-HVHWLVTNNPEDYIENLIIAFNLKSEEFHEVP-LPHLENRNDVL 252 (381)
Q Consensus 175 ~~~~vyss~t~~W~~~~~~~p~~~~~~~~~v~~nG-~lYwl~~~~~~~~~~~~i~~fD~~~e~~~~i~-~P~~~~~~~~~ 252 (381)
..+.+++..++.-+.+. ..+.... .....-+| .|++...... ...|..+|+.+.+.+.+. .+... .
T Consensus 223 ~~i~i~dl~~G~~~~l~-~~~~~~~--~~~~SPDG~~La~~~~~~g----~~~I~~~d~~tg~~~~lt~~~~~~-----~ 290 (429)
T PRK03629 223 SALVIQTLANGAVRQVA-SFPRHNG--APAFSPDGSKLAFALSKTG----SLNLYVMDLASGQIRQVTDGRSNN-----T 290 (429)
T ss_pred cEEEEEECCCCCeEEcc-CCCCCcC--CeEECCCCCEEEEEEcCCC----CcEEEEEECCCCCEEEccCCCCCc-----C
Confidence 56777888777766554 3322110 01112245 4666543221 125888999887765552 21111 1
Q ss_pred eEEEEEECCe-EEEEEecCCCceEEEEEEC---CceeEEEEecCCCCCeeEEEEEEeCCCEEEEEecccCCccccCCcEE
Q 016891 253 VMFVGNFSGC-LYFSCLCNYPQPVDIWVLM---GCWTKTFSFPRSVGDYVKALAYSKSGGKVLVDKFEYGEDEDINRWEL 328 (381)
Q Consensus 253 ~~~L~~~~G~-L~~~~~~~~~~~~~iW~l~---~~W~~~~~i~~~~~~~~~~~~~~~~g~~i~l~~~~~~~~~~~~~~~l 328 (381)
.+.. .-+|+ |.+.....+ ..+||.++ ..-.+ +.. .+.......+.++|+.|++... ......+
T Consensus 291 ~~~w-SPDG~~I~f~s~~~g--~~~Iy~~d~~~g~~~~---lt~-~~~~~~~~~~SpDG~~Ia~~~~------~~g~~~I 357 (429)
T PRK03629 291 EPTW-FPDSQNLAYTSDQAG--RPQVYKVNINGGAPQR---ITW-EGSQNQDADVSSDGKFMVMVSS------NGGQQHI 357 (429)
T ss_pred ceEE-CCCCCEEEEEeCCCC--CceEEEEECCCCCeEE---eec-CCCCccCEEECCCCCEEEEEEc------cCCCceE
Confidence 1111 22554 444443333 56788877 33222 221 1111223456678887777631 0123469
Q ss_pred EEEeCCCCceeeeeEE
Q 016891 329 FWYDLQNQGAAADQVT 344 (381)
Q Consensus 329 ~~yd~~t~~~~~~~v~ 344 (381)
+.+|+++++. +.+.
T Consensus 358 ~~~dl~~g~~--~~Lt 371 (429)
T PRK03629 358 AKQDLATGGV--QVLT 371 (429)
T ss_pred EEEECCCCCe--EEeC
Confidence 9999999998 7773
No 162
>KOG3926 consensus F-box proteins [Amino acid transport and metabolism]
Probab=23.22 E-value=32 Score=30.68 Aligned_cols=36 Identities=25% Similarity=0.332 Sum_probs=27.8
Q ss_pred CCCcHHHHHHHHccCC-ccceeEEEeehhhhhhhccC
Q 016891 2 AGLPTDINIDILSRLS-VKCLLRFKCVSKSFCSLIDS 37 (381)
Q Consensus 2 ~~LPdDll~eIL~rLP-~~~l~r~r~VcK~W~~li~~ 37 (381)
.+||.+++.+||.||| -+||..++.|--.-..++.+
T Consensus 203 ~dLP~e~vl~Il~rlsDh~dL~s~aqa~etl~~l~~e 239 (332)
T KOG3926|consen 203 HDLPLECVLNILLRLSDHRDLESLAQAWETLAKLSEE 239 (332)
T ss_pred ccchHHHHHHHHHHccCcchHHHHHHhhHHHHHHHHH
Confidence 5899999999999999 77888877775544444443
No 163
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=23.09 E-value=6.2e+02 Score=23.57 Aligned_cols=33 Identities=9% Similarity=0.157 Sum_probs=23.0
Q ss_pred EEEEeCCCEEEEEecccCCccccCCcEEEEEeCCCCceeeeeEE
Q 016891 301 LAYSKSGGKVLVDKFEYGEDEDINRWELFWYDLQNQGAAADQVT 344 (381)
Q Consensus 301 ~~~~~~g~~i~l~~~~~~~~~~~~~~~l~~yd~~t~~~~~~~v~ 344 (381)
+|+.+++..|+-+ ..+..++.||++.+.+ +.|.
T Consensus 193 iGiA~~~k~imsa---------s~dt~i~lw~lkGq~L--~~id 225 (420)
T KOG2096|consen 193 IGIAGNAKYIMSA---------SLDTKICLWDLKGQLL--QSID 225 (420)
T ss_pred EeecCCceEEEEe---------cCCCcEEEEecCCcee--eeec
Confidence 6767666533333 3456799999998888 8883
No 164
>PF12458 DUF3686: ATPase involved in DNA repair ; InterPro: IPR020958 This entry represents an N-terminal domain associated with ATPases and some uncharacterised proteins; it is approximately 450 amino acids in length and contains two conserved sequence motifs: DVF and SPNGED.
Probab=22.86 E-value=7e+02 Score=24.16 Aligned_cols=56 Identities=21% Similarity=0.227 Sum_probs=33.3
Q ss_pred CcEEEEee----C-CCcEEEEccCCcceeeCCCCCCC---CC-CceEEEEEeEECCCCCEEEEEE
Q 016891 109 NGLIAFKN----D-ENGIALWNPSTEEHLILPKFWGD---LK-DFMVVDGFGYDAVNDDYKVVRL 164 (381)
Q Consensus 109 ~GLl~~~~----~-~~~~~V~NP~T~~~~~LP~~~~~---~~-~~~~~~~~~~d~~~~~ykVv~~ 164 (381)
+.|+++.- . .-+++|+|..|++..+|...... .+ .....+.-||--.+|++|++-.
T Consensus 238 G~LILLrI~PY~E~~~RylVfN~~t~~V~R~Daig~acv~LPedqGiIFpgGYyLqtGe~K~Fd~ 302 (448)
T PF12458_consen 238 GNLILLRIRPYREEEWRYLVFNTRTKKVVRLDAIGQACVRLPEDQGIIFPGGYYLQTGEYKTFDT 302 (448)
T ss_pred CcEEEEEeccCCCcceeEEEEecccceEEEecchhhhhhcCCccCceEccCceEeccCCceeecc
Confidence 45566654 2 23799999999999998744321 11 1223334455556777776543
No 165
>KOG2714 consensus SETA binding protein SB1 and related proteins, contain BTB/POZ domain [General function prediction only]
Probab=22.72 E-value=7.1e+02 Score=24.15 Aligned_cols=71 Identities=14% Similarity=0.133 Sum_probs=38.9
Q ss_pred CcEEEEccCCcceeeC-CCCCCCCCCceEEEEEeEECCCCCEEEEEEEEEeecCccceEEEEEEcCC--CcEEEcc
Q 016891 119 NGIALWNPSTEEHLIL-PKFWGDLKDFMVVDGFGYDAVNDDYKVVRLVQLVIGNVGYTEIAVYSLRT--NSWRRIR 191 (381)
Q Consensus 119 ~~~~V~NP~T~~~~~L-P~~~~~~~~~~~~~~~~~d~~~~~ykVv~~~~~~~~~~~~~~~~vyss~t--~~W~~~~ 191 (381)
..+-|||+.|++-+.. |..+.... .....++..+..+-|-+.........+..+...+-|..++ +.|.+++
T Consensus 245 ~~Igvw~~~t~q~~d~~~~s~~dsa--g~~~kL~w~ng~~~li~~~~fp~~~kdN~~i~~~d~Rd~n~~~~W~~i~ 318 (465)
T KOG2714|consen 245 GKIGVWHAVTQQAQDVQPISSYDSA--GSFLKLGWLNGSNLLIDSQKFPLRMKDNDLIVTEDFRDRNTSGNWIEIA 318 (465)
T ss_pred ccccccchhhhceeeeeeccCcccc--CChhhhccccCceeEEEEeeccccccCCceEEEeeccCCCccceEEEec
Confidence 4678999999954443 43332211 1122344444444344433332211233447888888888 8998876
No 166
>PF11012 DUF2850: Protein of unknown function (DUF2850); InterPro: IPR021271 This family of proteins with unknown function appear to be restricted to Vibrionaceae.
Probab=22.45 E-value=2.7e+02 Score=19.86 Aligned_cols=32 Identities=19% Similarity=0.269 Sum_probs=21.6
Q ss_pred CcEEEcccCCCccee---cCCCcEEECCeeEEEEee
Q 016891 185 NSWRRIRVDFPYYIL---HGWDGTFADGHVHWLVTN 217 (381)
Q Consensus 185 ~~W~~~~~~~p~~~~---~~~~~v~~nG~lYwl~~~ 217 (381)
|.|-+.. .+|+... ....||+.||.+--...+
T Consensus 4 G~WvE~~-va~Ya~e~~~l~~~GV~~ngrlV~T~F~ 38 (79)
T PF11012_consen 4 GTWVEQG-VAPYAAEEFTLNESGVFRNGRLVATSFE 38 (79)
T ss_pred eEEEECC-CCCccccEEEECCCcEEECCCEEeeEEE
Confidence 6799988 5565433 233999999987655443
No 167
>PF07861 WND: WisP family N-Terminal Region; InterPro: IPR012503 This family is found at the N terminus of the Tropheryma whipplei WisP family proteins [].
Probab=21.81 E-value=1.2e+02 Score=25.41 Aligned_cols=32 Identities=13% Similarity=0.208 Sum_probs=25.9
Q ss_pred CeeEEcccCcEEEEeeCCCcEEEEccCCccee
Q 016891 101 RTPIIDSCNGLIAFKNDENGIALWNPSTEEHL 132 (381)
Q Consensus 101 ~~~~~~s~~GLl~~~~~~~~~~V~NP~T~~~~ 132 (381)
++.-+.-.||.+|+.+..+..+..+|+||+-.
T Consensus 32 r~s~VS~~~~~~C~s~~~~~~~~vDP~Tgra~ 63 (263)
T PF07861_consen 32 RFSSVSFAGGRACLSDTAGSVYTVDPLTGRAV 63 (263)
T ss_pred eeEEEecCCceEEEecCCCceEEecccccccc
Confidence 45566777999999998888999999996643
No 168
>PF00568 WH1: WH1 domain; InterPro: IPR000697 The EVH1 (WH1, RanBP1-WASP) domain is found in multi-domain proteins implicated in a diverse range of signalling, nuclear transport and cytoskeletal events. This domain of around 115 amino acids is present in species ranging from yeast to mammals. Many EVH1-containing proteins associate with actin-based structures and play a role in cytoskeletal organisation. EVH1 domains recognise and bind the proline-rich motif FPPPP with low-affinity, further interactions then form between flanking residues [][]. WASP family proteins contain a EVH1 (WH1) in their N-terminals which bind proline-rich sequences in the WASP interacting protein. Proteins of the RanBP1 family contain a WH1 domain in their N-terminal region, which seems to bind a different sequence motif present in the C-terminal part of RanGTP protein [,]. Tertiary structure of the WH1 domain of the Mena protein revealed structure similarities with the pleckstrin homology (PH) domain. The overall fold consists of a compact parallel beta-sandwich, closed along one edge by a long alpha-helix. A highly conserved cluster of three surface-exposed aromatic side-chains forms the recognition site for the molecules target ligands. [].; GO: 0005515 protein binding; PDB: 1I2H_A 1DDV_A 1DDW_A 1EGX_A 3SYX_A 1TJ6_B 1XOD_B 1EVH_A 1I7A_B 2JP2_A ....
Probab=21.66 E-value=3.5e+02 Score=20.43 Aligned_cols=39 Identities=15% Similarity=0.011 Sum_probs=28.6
Q ss_pred CcEEEEccCCcc-eeeCCCCCCCCCCceEEEEEeEECCCCCEEEEEEE
Q 016891 119 NGIALWNPSTEE-HLILPKFWGDLKDFMVVDGFGYDAVNDDYKVVRLV 165 (381)
Q Consensus 119 ~~~~V~NP~T~~-~~~LP~~~~~~~~~~~~~~~~~d~~~~~ykVv~~~ 165 (381)
-.++..||.+++ |... .....+.+..|...+.|.|..+.
T Consensus 16 A~v~~~~p~~~~~W~~~--------~~~g~v~~v~d~~~~~y~I~~~~ 55 (111)
T PF00568_consen 16 AQVYQADPDTKRQWSPV--------KGTGVVCFVKDNSRRSYFIRLYD 55 (111)
T ss_dssp EEEEEEETTTSESEEES--------SSEEEEEEEEETTTTEEEEEEEE
T ss_pred EEEEEEEcCCCCcEeeC--------CeEEEEEEEEECCCCEEEEEEEE
Confidence 357889998888 9886 12345667788888888887764
No 169
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=21.49 E-value=7.7e+02 Score=24.11 Aligned_cols=152 Identities=9% Similarity=0.007 Sum_probs=78.2
Q ss_pred EEcccCc-EEEEeeCCCcEEEEccCCcceeeCCCCCCCCCCceEEEEEeEECCCCCEEEEEEEEEeecCccceEEEEEEc
Q 016891 104 IIDSCNG-LIAFKNDENGIALWNPSTEEHLILPKFWGDLKDFMVVDGFGYDAVNDDYKVVRLVQLVIGNVGYTEIAVYSL 182 (381)
Q Consensus 104 ~~~s~~G-Ll~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~d~~~~~ykVv~~~~~~~~~~~~~~~~vyss 182 (381)
.+..++- .+|......-+++||-.|.+...|-++...... ..-.|-..+..+ | +++.. ..--+++...
T Consensus 264 ~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~--~~e~FeVShd~~-f--ia~~G------~~G~I~lLha 332 (514)
T KOG2055|consen 264 EFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEK--SMERFEVSHDSN-F--IAIAG------NNGHIHLLHA 332 (514)
T ss_pred eecCCCceEEEecccceEEEEeeccccccccccCCCCcccc--hhheeEecCCCC-e--EEEcc------cCceEEeehh
Confidence 3344443 566666677899999999999998766433211 111222222222 2 23321 1134667777
Q ss_pred CCCcEEEcccCCCcceecCCCcEEECCeeEEEEeeCCCCCCcCEEEEEECCCCeeeeecCCCCCCCCCceeEEEEE-ECC
Q 016891 183 RTNSWRRIRVDFPYYILHGWDGTFADGHVHWLVTNNPEDYIENLIIAFNLKSEEFHEVPLPHLENRNDVLVMFVGN-FSG 261 (381)
Q Consensus 183 ~t~~W~~~~~~~p~~~~~~~~~v~~nG~lYwl~~~~~~~~~~~~i~~fD~~~e~~~~i~~P~~~~~~~~~~~~L~~-~~G 261 (381)
.|+.|-..- .++..... -...-+|+.-|+++.+. .|.++|+........ +-.... -....++. .+|
T Consensus 333 kT~eli~s~-KieG~v~~--~~fsSdsk~l~~~~~~G------eV~v~nl~~~~~~~r-f~D~G~---v~gts~~~S~ng 399 (514)
T KOG2055|consen 333 KTKELITSF-KIEGVVSD--FTFSSDSKELLASGGTG------EVYVWNLRQNSCLHR-FVDDGS---VHGTSLCISLNG 399 (514)
T ss_pred hhhhhhhee-eeccEEee--EEEecCCcEEEEEcCCc------eEEEEecCCcceEEE-EeecCc---cceeeeeecCCC
Confidence 777775432 23222211 11224566666665442 699999998743222 111110 11234443 467
Q ss_pred eEEEEEecCCCceEEEEEEC
Q 016891 262 CLYFSCLCNYPQPVDIWVLM 281 (381)
Q Consensus 262 ~L~~~~~~~~~~~~~iW~l~ 281 (381)
.+..++...+ -+.|+..+
T Consensus 400 ~ylA~GS~~G--iVNIYd~~ 417 (514)
T KOG2055|consen 400 SYLATGSDSG--IVNIYDGN 417 (514)
T ss_pred ceEEeccCcc--eEEEeccc
Confidence 7444444444 67888766
No 170
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=21.46 E-value=3.9e+02 Score=20.60 Aligned_cols=91 Identities=19% Similarity=0.181 Sum_probs=51.8
Q ss_pred eEEEEEEcCCCcEEEcccCC-CcceecCC-CcEEECCeeEEEEeeCCCCCCcCEEEEE-ECCCCeeeee--cCCCCCCCC
Q 016891 175 TEIAVYSLRTNSWRRIRVDF-PYYILHGW-DGTFADGHVHWLVTNNPEDYIENLIIAF-NLKSEEFHEV--PLPHLENRN 249 (381)
Q Consensus 175 ~~~~vyss~t~~W~~~~~~~-p~~~~~~~-~~v~~nG~lYwl~~~~~~~~~~~~i~~f-D~~~e~~~~i--~~P~~~~~~ 249 (381)
..+-.|+.++.+|+.+. .+ ........ .=+-.+|+|-.+............|-++ |..+++|+.. .+|......
T Consensus 20 ~~IvsFDv~~E~f~~i~-~P~~~~~~~~~~~L~~~~G~L~~v~~~~~~~~~~~~iWvLeD~~k~~Wsk~~~~lp~~~~~~ 98 (129)
T PF08268_consen 20 NVIVSFDVRSEKFRFIK-LPEDPYSSDCSSTLIEYKGKLALVSYNDQGEPDSIDIWVLEDYEKQEWSKKHIVLPPSWQHF 98 (129)
T ss_pred cEEEEEEcCCceEEEEE-eeeeeccccCccEEEEeCCeEEEEEecCCCCcceEEEEEeeccccceEEEEEEECChHHhcc
Confidence 66778889999999887 32 01111111 4456899999887665322122355555 5778899765 455432211
Q ss_pred --CceeEEEEEE-CCeEEEE
Q 016891 250 --DVLVMFVGNF-SGCLYFS 266 (381)
Q Consensus 250 --~~~~~~L~~~-~G~L~~~ 266 (381)
......++.. .|.+.++
T Consensus 99 ~~~~~~~~~g~~~~Geiv~~ 118 (129)
T PF08268_consen 99 VHDCDFSFVGVTDTGEIVFA 118 (129)
T ss_pred cCCcEEEEEEEcCCCEEEEE
Confidence 1122233333 5888887
No 171
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=20.95 E-value=7.8e+02 Score=23.98 Aligned_cols=102 Identities=15% Similarity=0.188 Sum_probs=53.8
Q ss_pred cEEECCeeEEEEeeCCCCCCcCEEEEEECCCCeeeee-cCCCCC------CCCCceeEEEEEECCeEEEEEecCCCceEE
Q 016891 204 GTFADGHVHWLVTNNPEDYIENLIIAFNLKSEEFHEV-PLPHLE------NRNDVLVMFVGNFSGCLYFSCLCNYPQPVD 276 (381)
Q Consensus 204 ~v~~nG~lYwl~~~~~~~~~~~~i~~fD~~~e~~~~i-~~P~~~------~~~~~~~~~L~~~~G~L~~~~~~~~~~~~~ 276 (381)
+|.+=+.-|++.+.+++ .|.-.++.+.+--.+ +.+... ...+.+.-.|+.+.|+=.++...... .+.
T Consensus 332 cv~~In~~HfvsGSdnG-----~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G-~vr 405 (479)
T KOG0299|consen 332 CVAFINDEHFVSGSDNG-----SIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSG-CVR 405 (479)
T ss_pred eEEEecccceeeccCCc-----eEEEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCC-ceE
Confidence 33333344555555443 566666665544332 222211 11112455677777654444443332 899
Q ss_pred EEEEC---CceeEEEEecCCCCCeeEEEEEEeCCCEEEEE
Q 016891 277 IWVLM---GCWTKTFSFPRSVGDYVKALAYSKSGGKVLVD 313 (381)
Q Consensus 277 iW~l~---~~W~~~~~i~~~~~~~~~~~~~~~~g~~i~l~ 313 (381)
+|..+ ..=..++.++ +.....-+++..+|..|+..
T Consensus 406 LW~i~~g~r~i~~l~~ls--~~GfVNsl~f~~sgk~ivag 443 (479)
T KOG0299|consen 406 LWKIEDGLRAINLLYSLS--LVGFVNSLAFSNSGKRIVAG 443 (479)
T ss_pred EEEecCCccccceeeecc--cccEEEEEEEccCCCEEEEe
Confidence 99999 3344455554 22345566777788856655
No 172
>PF13497 DUF4121: Domain of unknown function (DUF4121)
Probab=20.42 E-value=1.2e+02 Score=26.74 Aligned_cols=38 Identities=21% Similarity=0.228 Sum_probs=22.8
Q ss_pred CcEEECCeeEEEEeeCCCCCCcCEEEEEECCCCeeeee
Q 016891 203 DGTFADGHVHWLVTNNPEDYIENLIIAFNLKSEEFHEV 240 (381)
Q Consensus 203 ~~v~~nG~lYwl~~~~~~~~~~~~i~~fD~~~e~~~~i 240 (381)
+|.+-||.+|+.+.-.--....-.=+--|..|++|+.+
T Consensus 128 ~Gac~NG~V~F~A~V~lW~y~EP~plYg~~tT~~w~k~ 165 (262)
T PF13497_consen 128 CGACANGSVYFDAKVPLWEYREPEPLYGDYTTEEWRKI 165 (262)
T ss_pred ccccCCceEEEEEEeeeEEecCCCcccCCccceeEEEE
Confidence 88899999999874210000000112336778999887
No 173
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=20.25 E-value=7.1e+02 Score=23.17 Aligned_cols=180 Identities=7% Similarity=0.016 Sum_probs=84.2
Q ss_pred cEEEEccCCcceeeCCCCCCCCCCceEEEEEeEECCCCCEEEEEEEEEeecCccceEEEEEEcCCCc--EEEcccCCCcc
Q 016891 120 GIALWNPSTEEHLILPKFWGDLKDFMVVDGFGYDAVNDDYKVVRLVQLVIGNVGYTEIAVYSLRTNS--WRRIRVDFPYY 197 (381)
Q Consensus 120 ~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~d~~~~~ykVv~~~~~~~~~~~~~~~~vyss~t~~--W~~~~~~~p~~ 197 (381)
.++|+|..+++...++.+............++..+... +++.... .-......+.+++..++. +.... ..+..
T Consensus 159 ~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~--~l~~~~~--nR~q~~~~l~~~d~~tg~~~~~~~e-~~~~W 233 (353)
T PF00930_consen 159 SLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGK--RLWVQWL--NRDQNRLDLVLCDASTGETRVVLEE-TSDGW 233 (353)
T ss_dssp EEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTE--EEEEEEE--ETTSTEEEEEEEEECTTTCEEEEEE-ESSSS
T ss_pred EEEEEECCCCcEEEeeeccccCCCccCcccceecCCCc--EEEEEEc--ccCCCEEEEEEEECCCCceeEEEEe-cCCcc
Confidence 57788888887665554411011112223333333322 2322222 112223666667776642 22222 11211
Q ss_pred eecCCCcEEE---CCeeEEEEeeCCCCCCcCEEEEEECCCCeeeee-cCCCCCCCCCceeEEEEEECCeEEEEEecCCCc
Q 016891 198 ILHGWDGTFA---DGHVHWLVTNNPEDYIENLIIAFNLKSEEFHEV-PLPHLENRNDVLVMFVGNFSGCLYFSCLCNYPQ 273 (381)
Q Consensus 198 ~~~~~~~v~~---nG~lYwl~~~~~~~~~~~~i~~fD~~~e~~~~i-~~P~~~~~~~~~~~~L~~~~G~L~~~~~~~~~~ 273 (381)
+.......++ ++.+.|+...+. -..|..+|..+...+.+ .....+ .....+-.-++.+++......+.
T Consensus 234 v~~~~~~~~~~~~~~~~l~~s~~~G----~~hly~~~~~~~~~~~lT~G~~~V----~~i~~~d~~~~~iyf~a~~~~p~ 305 (353)
T PF00930_consen 234 VDVYDPPHFLGPDGNEFLWISERDG----YRHLYLYDLDGGKPRQLTSGDWEV----TSILGWDEDNNRIYFTANGDNPG 305 (353)
T ss_dssp SSSSSEEEE-TTTSSEEEEEEETTS----SEEEEEEETTSSEEEESS-SSS-E----EEEEEEECTSSEEEEEESSGGTT
T ss_pred eeeecccccccCCCCEEEEEEEcCC----CcEEEEEcccccceeccccCceee----cccceEcCCCCEEEEEecCCCCC
Confidence 2122233334 457777776332 24899999998886544 222222 01122223356788777765555
Q ss_pred eEEEEEEC-CceeEEEEecCCCCCeeEEEEEEeCCCEEEEE
Q 016891 274 PVDIWVLM-GCWTKTFSFPRSVGDYVKALAYSKSGGKVLVD 313 (381)
Q Consensus 274 ~~~iW~l~-~~W~~~~~i~~~~~~~~~~~~~~~~g~~i~l~ 313 (381)
.-+||... ..=.....|....+.. .-..+.++|+.+++.
T Consensus 306 ~r~lY~v~~~~~~~~~~LT~~~~~~-~~~~~Spdg~y~v~~ 345 (353)
T PF00930_consen 306 ERHLYRVSLDSGGEPKCLTCEDGDH-YSASFSPDGKYYVDT 345 (353)
T ss_dssp SBEEEEEETTETTEEEESSTTSSTT-EEEEE-TTSSEEEEE
T ss_pred ceEEEEEEeCCCCCeEeccCCCCCc-eEEEECCCCCEEEEE
Confidence 77888887 4012223343222212 466677788866655
No 174
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=20.06 E-value=8.9e+02 Score=24.25 Aligned_cols=123 Identities=15% Similarity=0.198 Sum_probs=61.2
Q ss_pred CcEEEEeeCCCcEEEEccCCcceeeC--CCCCCCCCCceEE----EEEeEECCCCCEEEEEEEEEeecCccceEEEEEEc
Q 016891 109 NGLIAFKNDENGIALWNPSTEEHLIL--PKFWGDLKDFMVV----DGFGYDAVNDDYKVVRLVQLVIGNVGYTEIAVYSL 182 (381)
Q Consensus 109 ~GLl~~~~~~~~~~V~NP~T~~~~~L--P~~~~~~~~~~~~----~~~~~d~~~~~ykVv~~~~~~~~~~~~~~~~vyss 182 (381)
+|.|.+......++-+|..||+.+.- +..+......... -+..+. ++ +|+.... .-.+..++.
T Consensus 69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~---~~-~v~v~t~-------dg~l~ALDa 137 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALY---DG-KVFFGTL-------DARLVALDA 137 (527)
T ss_pred CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceEE---CC-EEEEEcC-------CCEEEEEEC
Confidence 78887766556677789999875542 2111110000000 000111 11 3332211 135667777
Q ss_pred CCC--cEEEcccCCCcceecCCCcEEECCeeEEEEeeCCCCCCcCEEEEEECCCC--eeeeecCC
Q 016891 183 RTN--SWRRIRVDFPYYILHGWDGTFADGHVHWLVTNNPEDYIENLIIAFNLKSE--EFHEVPLP 243 (381)
Q Consensus 183 ~t~--~W~~~~~~~p~~~~~~~~~v~~nG~lYwl~~~~~~~~~~~~i~~fD~~~e--~~~~i~~P 243 (381)
+|+ .|+.-.............+++.+|.+|.-....+. .....|.+||..+. .|+.-..|
T Consensus 138 ~TGk~~W~~~~~~~~~~~~~tssP~v~~g~Vivg~~~~~~-~~~G~v~AlD~~TG~~lW~~~~~p 201 (527)
T TIGR03075 138 KTGKVVWSKKNGDYKAGYTITAAPLVVKGKVITGISGGEF-GVRGYVTAYDAKTGKLVWRRYTVP 201 (527)
T ss_pred CCCCEEeecccccccccccccCCcEEECCEEEEeeccccc-CCCcEEEEEECCCCceeEeccCcC
Confidence 776 68754322221112223778899999886532210 11237999999874 56544333
Done!