Query 016892
Match_columns 381
No_of_seqs 367 out of 1667
Neff 6.0
Searched_HMMs 46136
Date Fri Mar 29 03:44:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016892.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016892hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4265 Predicted E3 ubiquitin 100.0 4.2E-61 9.1E-66 468.5 15.0 246 123-380 100-347 (349)
2 PF13920 zf-C3HC4_3: Zinc fing 99.3 9.4E-13 2E-17 95.9 2.9 49 323-371 2-50 (50)
3 KOG4172 Predicted E3 ubiquitin 99.3 2.6E-13 5.5E-18 99.8 -1.0 52 323-374 7-59 (62)
4 KOG4275 Predicted E3 ubiquitin 98.9 1.1E-10 2.3E-15 112.4 -0.7 90 282-376 249-349 (350)
5 KOG0317 Predicted E3 ubiquitin 98.9 1.7E-09 3.6E-14 104.3 5.5 55 320-375 236-290 (293)
6 PLN03208 E3 ubiquitin-protein 98.9 2.9E-09 6.2E-14 98.1 5.4 56 320-376 15-86 (193)
7 PHA02929 N1R/p28-like protein; 98.8 3.8E-09 8.3E-14 100.7 5.1 56 321-377 172-235 (238)
8 KOG0823 Predicted E3 ubiquitin 98.8 5.3E-09 1.1E-13 98.2 5.4 56 320-376 44-102 (230)
9 PF13639 zf-RING_2: Ring finge 98.8 2.2E-09 4.9E-14 75.9 1.4 41 324-365 1-44 (44)
10 KOG1571 Predicted E3 ubiquitin 98.7 5.4E-09 1.2E-13 103.5 2.3 55 318-376 300-354 (355)
11 PF13923 zf-C3HC4_2: Zinc fing 98.7 9.8E-09 2.1E-13 71.0 2.4 38 326-364 1-39 (39)
12 KOG1924 RhoA GTPase effector D 98.7 5.1E-08 1.1E-12 104.0 8.4 12 135-146 617-628 (1102)
13 PF15227 zf-C3HC4_4: zinc fing 98.5 8.9E-08 1.9E-12 67.6 2.8 38 326-364 1-42 (42)
14 cd00162 RING RING-finger (Real 98.5 1.1E-07 2.5E-12 65.4 3.3 43 325-368 1-45 (45)
15 PHA02926 zinc finger-like prot 98.5 7.7E-08 1.7E-12 90.1 2.9 53 321-374 168-235 (242)
16 KOG0320 Predicted E3 ubiquitin 98.4 1E-07 2.3E-12 86.3 3.0 50 321-371 129-180 (187)
17 PF14634 zf-RING_5: zinc-RING 98.4 2.7E-07 5.9E-12 65.5 2.9 41 325-366 1-44 (44)
18 TIGR00599 rad18 DNA repair pro 98.3 2.7E-07 5.9E-12 93.9 3.2 51 319-370 22-72 (397)
19 smart00184 RING Ring finger. E 98.3 4.8E-07 1E-11 60.1 3.3 38 326-364 1-39 (39)
20 PF00097 zf-C3HC4: Zinc finger 98.3 3.5E-07 7.6E-12 63.4 2.4 38 326-364 1-41 (41)
21 smart00504 Ubox Modified RING 98.3 6E-07 1.3E-11 67.5 3.9 46 324-370 2-47 (63)
22 KOG4628 Predicted E3 ubiquitin 98.3 6.3E-07 1.4E-11 89.5 3.8 49 324-373 230-282 (348)
23 KOG1100 Predicted E3 ubiquitin 98.2 3.2E-07 7E-12 86.0 1.1 48 324-375 159-206 (207)
24 PF12678 zf-rbx1: RING-H2 zinc 98.2 8.9E-07 1.9E-11 69.7 3.4 41 324-365 20-73 (73)
25 COG5540 RING-finger-containing 98.2 8.6E-07 1.9E-11 86.2 3.6 50 319-369 319-372 (374)
26 COG5243 HRD1 HRD ubiquitin lig 98.2 1.1E-06 2.4E-11 87.4 4.2 48 320-368 284-344 (491)
27 KOG2164 Predicted E3 ubiquitin 98.1 1.4E-06 3.1E-11 89.9 3.5 55 323-378 186-247 (513)
28 COG5574 PEX10 RING-finger-cont 98.1 1.3E-06 2.9E-11 83.6 2.7 49 321-370 213-263 (271)
29 KOG0287 Postreplication repair 98.0 1.4E-06 3.1E-11 85.8 0.5 50 321-371 21-70 (442)
30 KOG1785 Tyrosine kinase negati 98.0 2.3E-06 5E-11 85.8 2.0 54 322-376 368-423 (563)
31 PF13445 zf-RING_UBOX: RING-ty 98.0 3.1E-06 6.8E-11 60.1 1.6 31 326-358 1-35 (43)
32 KOG0802 E3 ubiquitin ligase [P 97.9 3.5E-06 7.6E-11 89.5 1.7 49 321-370 289-342 (543)
33 KOG2177 Predicted E3 ubiquitin 97.9 4E-06 8.6E-11 78.4 0.8 46 320-366 10-55 (386)
34 COG5432 RAD18 RING-finger-cont 97.8 5.6E-06 1.2E-10 80.2 1.3 50 321-371 23-72 (391)
35 KOG0978 E3 ubiquitin ligase in 97.7 6.6E-06 1.4E-10 88.5 -0.0 54 321-375 641-697 (698)
36 PF04564 U-box: U-box domain; 97.7 2.1E-05 4.5E-10 61.8 2.6 49 322-371 3-52 (73)
37 KOG0824 Predicted E3 ubiquitin 97.7 1.6E-05 3.4E-10 77.6 1.8 52 322-374 6-58 (324)
38 COG5236 Uncharacterized conser 97.6 7E-05 1.5E-09 74.3 4.3 53 320-373 58-112 (493)
39 KOG1039 Predicted E3 ubiquitin 97.5 4E-05 8.7E-10 76.9 2.2 51 321-372 159-224 (344)
40 TIGR00570 cdk7 CDK-activating 97.5 7.9E-05 1.7E-09 73.6 3.5 47 323-370 3-55 (309)
41 KOG0311 Predicted E3 ubiquitin 97.4 1.3E-05 2.8E-10 79.6 -2.6 58 321-379 41-100 (381)
42 PF12861 zf-Apc11: Anaphase-pr 97.4 0.00017 3.6E-09 58.5 3.5 46 323-369 21-82 (85)
43 KOG4692 Predicted E3 ubiquitin 97.3 0.00014 2.9E-09 72.5 2.8 50 321-371 420-469 (489)
44 KOG4159 Predicted E3 ubiquitin 97.2 0.00022 4.8E-09 73.0 2.5 50 321-371 82-131 (398)
45 KOG0828 Predicted E3 ubiquitin 97.1 0.00039 8.5E-09 71.8 4.2 50 320-370 568-635 (636)
46 PF14447 Prok-RING_4: Prokaryo 96.9 0.00041 8.8E-09 51.7 1.4 46 322-370 6-51 (55)
47 PF14835 zf-RING_6: zf-RING of 96.8 0.00019 4.1E-09 55.1 -1.3 45 322-369 6-51 (65)
48 smart00744 RINGv The RING-vari 96.5 0.002 4.3E-08 46.9 2.8 40 325-365 1-49 (49)
49 COG5152 Uncharacterized conser 96.3 0.002 4.3E-08 59.8 1.8 51 323-374 196-246 (259)
50 KOG1813 Predicted E3 ubiquitin 96.2 0.0021 4.6E-08 62.8 1.8 50 323-373 241-290 (313)
51 COG5219 Uncharacterized conser 96.0 0.0038 8.2E-08 69.0 2.5 69 295-369 1446-1523(1525)
52 KOG0297 TNF receptor-associate 95.9 0.0044 9.6E-08 63.5 2.3 54 320-374 18-72 (391)
53 KOG2879 Predicted E3 ubiquitin 95.8 0.011 2.3E-07 57.5 4.3 53 319-372 235-290 (298)
54 KOG0825 PHD Zn-finger protein 95.7 0.0029 6.4E-08 68.6 0.3 52 322-374 122-176 (1134)
55 PF14570 zf-RING_4: RING/Ubox 95.6 0.0053 1.2E-07 44.7 1.2 42 326-368 1-47 (48)
56 KOG0804 Cytoplasmic Zn-finger 95.4 0.01 2.2E-07 61.1 2.7 48 319-369 171-222 (493)
57 KOG2660 Locus-specific chromos 95.3 0.0042 9E-08 61.6 -0.3 51 321-372 13-64 (331)
58 PF07800 DUF1644: Protein of u 95.0 0.029 6.3E-07 50.5 4.1 52 323-374 2-96 (162)
59 KOG1734 Predicted RING-contain 94.9 0.0094 2E-07 57.8 0.8 49 321-370 222-282 (328)
60 PF04641 Rtf2: Rtf2 RING-finge 94.8 0.033 7.2E-07 54.0 4.4 58 320-379 110-171 (260)
61 KOG4367 Predicted Zn-finger pr 94.8 0.016 3.5E-07 59.5 2.3 37 321-358 2-38 (699)
62 KOG1814 Predicted E3 ubiquitin 94.8 0.023 5E-07 58.0 3.4 32 322-354 183-217 (445)
63 KOG0827 Predicted E3 ubiquitin 94.4 0.029 6.4E-07 56.8 3.0 51 323-374 4-61 (465)
64 KOG3039 Uncharacterized conser 94.3 0.044 9.6E-07 52.6 3.6 54 322-376 220-277 (303)
65 COG5194 APC11 Component of SCF 94.1 0.047 1E-06 43.8 2.9 29 340-369 53-81 (88)
66 PF11793 FANCL_C: FANCL C-term 94.0 0.0099 2.2E-07 46.4 -1.1 47 323-370 2-67 (70)
67 KOG4739 Uncharacterized protei 93.8 0.022 4.7E-07 54.4 0.7 44 325-371 5-50 (233)
68 KOG1002 Nucleotide excision re 93.5 0.03 6.5E-07 58.8 1.1 51 318-369 531-586 (791)
69 KOG1428 Inhibitor of type V ad 93.4 0.047 1E-06 62.9 2.4 51 320-371 3483-3546(3738)
70 COG5175 MOT2 Transcriptional r 93.3 0.048 1E-06 54.5 2.2 47 323-370 14-65 (480)
71 KOG2113 Predicted RNA binding 93.2 0.11 2.4E-06 51.5 4.3 55 318-374 338-392 (394)
72 KOG1001 Helicase-like transcri 93.1 0.036 7.8E-07 60.6 1.0 45 324-370 455-501 (674)
73 KOG4185 Predicted E3 ubiquitin 92.7 0.078 1.7E-06 51.8 2.6 44 324-368 4-54 (296)
74 PF05290 Baculo_IE-1: Baculovi 92.6 0.066 1.4E-06 46.9 1.8 49 322-371 79-134 (140)
75 KOG1645 RING-finger-containing 92.6 0.083 1.8E-06 54.0 2.7 46 321-367 2-54 (463)
76 PF05883 Baculo_RING: Baculovi 92.5 0.053 1.2E-06 47.6 1.1 35 322-357 25-68 (134)
77 KOG4445 Uncharacterized conser 92.1 0.28 6E-06 48.5 5.5 48 321-369 113-186 (368)
78 PHA02825 LAP/PHD finger-like p 91.8 0.19 4.2E-06 45.4 3.8 50 320-370 5-60 (162)
79 KOG3002 Zn finger protein [Gen 91.5 0.12 2.5E-06 51.4 2.3 46 321-371 46-93 (299)
80 PF03854 zf-P11: P-11 zinc fin 90.7 0.14 3.1E-06 37.1 1.4 45 325-372 4-49 (50)
81 COG5222 Uncharacterized conser 90.4 0.13 2.8E-06 50.7 1.4 43 323-366 274-318 (427)
82 PHA03096 p28-like protein; Pro 90.3 0.16 3.4E-06 50.2 1.9 42 324-366 179-231 (284)
83 KOG2932 E3 ubiquitin ligase in 89.9 0.14 2.9E-06 50.8 1.1 48 323-373 90-138 (389)
84 KOG1493 Anaphase-promoting com 89.8 0.098 2.1E-06 41.7 0.0 29 340-369 50-81 (84)
85 PF11789 zf-Nse: Zinc-finger o 88.8 0.29 6.4E-06 36.7 2.0 42 321-363 9-53 (57)
86 KOG2930 SCF ubiquitin ligase, 88.7 0.27 5.9E-06 41.3 1.9 27 340-367 80-106 (114)
87 KOG0826 Predicted E3 ubiquitin 88.3 0.33 7.1E-06 48.5 2.5 46 320-366 297-343 (357)
88 KOG3799 Rab3 effector RIM1 and 87.9 0.25 5.4E-06 43.5 1.3 45 321-369 63-118 (169)
89 PF10272 Tmpp129: Putative tra 87.0 0.76 1.6E-05 46.8 4.3 50 321-371 269-353 (358)
90 PHA02862 5L protein; Provision 86.8 0.63 1.4E-05 41.5 3.1 46 323-369 2-53 (156)
91 COG5220 TFB3 Cdk activating ki 86.7 0.26 5.6E-06 47.3 0.8 44 322-366 9-61 (314)
92 KOG3579 Predicted E3 ubiquitin 85.9 0.31 6.7E-06 47.8 0.8 33 322-355 267-303 (352)
93 PF10367 Vps39_2: Vacuolar sor 85.8 0.35 7.6E-06 39.6 1.0 31 321-352 76-108 (109)
94 KOG4672 Uncharacterized conser 85.2 5.7 0.00012 41.1 9.4 13 167-179 430-442 (487)
95 KOG2113 Predicted RNA binding 85.1 0.29 6.2E-06 48.7 0.2 57 321-377 134-191 (394)
96 KOG3800 Predicted E3 ubiquitin 81.6 1.1 2.3E-05 44.3 2.5 29 340-369 22-51 (300)
97 PF12906 RINGv: RING-variant d 79.7 1 2.2E-05 32.4 1.3 39 326-364 1-47 (47)
98 COG5183 SSM4 Protein involved 77.7 2.1 4.5E-05 47.6 3.4 50 320-369 9-66 (1175)
99 KOG3970 Predicted E3 ubiquitin 77.1 2.2 4.7E-05 40.8 3.0 48 322-370 49-106 (299)
100 PHA03247 large tegument protei 76.0 53 0.0012 41.6 14.4 10 288-297 3022-3031(3151)
101 KOG4362 Transcriptional regula 75.9 0.61 1.3E-05 50.9 -1.2 48 322-370 20-70 (684)
102 KOG1923 Rac1 GTPase effector F 74.5 12 0.00027 41.5 8.2 12 138-149 373-384 (830)
103 KOG3161 Predicted E3 ubiquitin 73.2 0.94 2E-05 49.0 -0.5 37 323-362 11-51 (861)
104 KOG0132 RNA polymerase II C-te 72.7 76 0.0017 35.6 13.5 11 120-130 706-716 (894)
105 KOG2114 Vacuolar assembly/sort 72.6 0.97 2.1E-05 50.3 -0.6 48 323-374 840-888 (933)
106 KOG1941 Acetylcholine receptor 72.4 0.98 2.1E-05 46.2 -0.6 46 320-366 362-413 (518)
107 PHA03247 large tegument protei 71.7 32 0.0007 43.3 11.3 9 142-150 3004-3012(3151)
108 KOG3842 Adaptor protein Pellin 70.5 3.7 8E-05 41.1 2.9 48 321-370 339-415 (429)
109 KOG0825 PHD Zn-finger protein 69.5 2.1 4.5E-05 47.4 1.0 51 321-372 97-157 (1134)
110 KOG3053 Uncharacterized conser 69.2 2.5 5.5E-05 41.1 1.5 53 318-371 15-84 (293)
111 KOG3899 Uncharacterized conser 68.4 6 0.00013 39.2 3.8 30 341-371 325-367 (381)
112 KOG2068 MOT2 transcription fac 67.7 3.2 7E-05 41.7 1.9 47 323-370 249-299 (327)
113 KOG0298 DEAD box-containing he 66.6 1.3 2.9E-05 51.2 -1.2 47 322-369 1152-1199(1394)
114 PLN02189 cellulose synthase 64.3 5.5 0.00012 45.7 3.1 49 321-370 32-88 (1040)
115 KOG3113 Uncharacterized conser 63.5 8.2 0.00018 37.6 3.7 57 320-379 108-168 (293)
116 KOG1923 Rac1 GTPase effector F 63.3 17 0.00038 40.3 6.5 6 90-95 334-339 (830)
117 KOG2817 Predicted E3 ubiquitin 62.1 6 0.00013 40.7 2.6 44 324-368 335-384 (394)
118 PF04216 FdhE: Protein involve 61.7 1.6 3.5E-05 42.8 -1.5 53 322-375 171-228 (290)
119 PF04710 Pellino: Pellino; In 59.8 3 6.4E-05 42.9 0.0 48 322-370 327-402 (416)
120 PF02891 zf-MIZ: MIZ/SP-RING z 58.1 9.9 0.00021 27.6 2.5 43 324-367 3-50 (50)
121 KOG1940 Zn-finger protein [Gen 57.2 5.4 0.00012 39.3 1.3 40 326-366 161-204 (276)
122 KOG1952 Transcription factor N 54.7 8.1 0.00018 43.3 2.2 46 322-368 190-246 (950)
123 PLN02436 cellulose synthase A 53.1 9.7 0.00021 43.9 2.6 49 321-370 34-90 (1094)
124 PLN02638 cellulose synthase A 50.2 17 0.00037 42.1 3.9 49 321-370 15-71 (1079)
125 KOG2807 RNA polymerase II tran 50.0 14 0.0003 37.3 2.9 45 321-366 328-375 (378)
126 KOG4849 mRNA cleavage factor I 49.5 2.4E+02 0.0053 29.0 11.4 11 222-232 357-367 (498)
127 TIGR01562 FdhE formate dehydro 49.1 6.9 0.00015 39.1 0.6 45 322-367 183-233 (305)
128 KOG1812 Predicted E3 ubiquitin 48.5 5.9 0.00013 40.8 0.0 32 322-354 145-180 (384)
129 KOG3268 Predicted E3 ubiquitin 48.0 7.7 0.00017 35.9 0.7 50 322-372 164-231 (234)
130 PLN02400 cellulose synthase 47.9 11 0.00025 43.4 2.1 49 321-370 34-90 (1085)
131 KOG1815 Predicted E3 ubiquitin 47.0 11 0.00024 39.3 1.8 54 321-375 68-132 (444)
132 PRK03564 formate dehydrogenase 47.0 8.7 0.00019 38.5 0.9 52 321-375 185-241 (309)
133 KOG0801 Predicted E3 ubiquitin 44.9 11 0.00023 34.5 1.1 22 321-342 175-199 (205)
134 KOG1609 Protein involved in mR 41.4 21 0.00047 34.5 2.7 49 323-371 78-136 (323)
135 KOG0269 WD40 repeat-containing 41.0 25 0.00053 39.2 3.3 40 323-363 779-820 (839)
136 COG4306 Uncharacterized protei 40.2 15 0.00034 32.1 1.3 26 346-374 30-55 (160)
137 PLN02915 cellulose synthase A 39.3 29 0.00063 40.1 3.6 48 322-370 14-69 (1044)
138 KOG4462 WASP-interacting prote 39.2 2.7E+02 0.0058 28.8 9.9 16 140-155 376-391 (437)
139 KOG3039 Uncharacterized conser 38.6 22 0.00047 34.7 2.2 32 321-353 41-72 (303)
140 KOG2066 Vacuolar assembly/sort 38.1 29 0.00063 38.8 3.3 42 323-366 784-832 (846)
141 PF14569 zf-UDP: Zinc-binding 38.0 27 0.00059 28.1 2.3 48 322-370 8-63 (80)
142 PF08746 zf-RING-like: RING-li 37.8 30 0.00064 24.4 2.3 38 326-364 1-43 (43)
143 KOG0309 Conserved WD40 repeat- 35.9 22 0.00048 39.7 1.9 37 325-362 1030-1068(1081)
144 PF10764 Gin: Inhibitor of sig 35.8 39 0.00084 24.3 2.6 31 325-357 1-31 (46)
145 KOG4185 Predicted E3 ubiquitin 35.8 3.6 7.8E-05 40.1 -3.7 45 322-367 206-265 (296)
146 PHA03378 EBNA-3B; Provisional 33.3 4.8E+02 0.01 29.4 11.3 17 294-310 959-975 (991)
147 COG5178 PRP8 U5 snRNP spliceos 32.0 31 0.00067 40.4 2.3 7 124-130 26-32 (2365)
148 TIGR00622 ssl1 transcription f 31.3 41 0.00088 28.9 2.4 42 323-365 55-110 (112)
149 KOG2231 Predicted E3 ubiquitin 30.9 4.8 0.0001 44.2 -4.0 50 320-371 75-127 (669)
150 smart00557 IG_FLMN Filamin-typ 30.3 1E+02 0.0023 24.6 4.7 41 149-189 46-86 (93)
151 KOG0955 PHD finger protein BR1 30.1 40 0.00087 39.1 2.9 17 319-335 215-231 (1051)
152 PF07975 C1_4: TFIIH C1-like d 30.1 29 0.00062 25.7 1.2 25 340-365 26-50 (51)
153 PF06906 DUF1272: Protein of u 29.6 43 0.00093 25.3 2.0 22 346-369 31-52 (57)
154 KOG4672 Uncharacterized conser 29.3 4E+02 0.0087 28.0 9.5 10 124-133 384-393 (487)
155 PF09229 Aha1_N: Activator of 29.1 1.2E+02 0.0025 26.3 5.1 39 140-184 41-87 (137)
156 KOG0827 Predicted E3 ubiquitin 28.4 5.5 0.00012 40.9 -3.8 48 322-370 195-246 (465)
157 PF10813 DUF2733: Protein of u 27.5 27 0.00058 23.4 0.5 12 1-12 1-13 (32)
158 PF04423 Rad50_zn_hook: Rad50 26.0 22 0.00048 25.9 -0.0 12 359-370 21-32 (54)
159 COG5178 PRP8 U5 snRNP spliceos 25.2 64 0.0014 38.0 3.3 19 165-183 149-167 (2365)
160 PF13240 zinc_ribbon_2: zinc-r 24.8 13 0.00028 22.8 -1.2 21 347-367 2-22 (23)
161 COG3813 Uncharacterized protei 24.6 48 0.001 26.4 1.6 24 343-369 29-52 (84)
162 COG5109 Uncharacterized conser 24.3 57 0.0012 33.0 2.4 42 324-366 337-384 (396)
163 PF04710 Pellino: Pellino; In 23.9 26 0.00056 36.3 0.0 38 334-376 302-345 (416)
164 KOG2034 Vacuolar sorting prote 22.5 43 0.00093 38.0 1.3 33 321-354 815-849 (911)
165 PF02318 FYVE_2: FYVE-type zin 22.0 84 0.0018 26.7 2.8 44 322-366 53-102 (118)
166 PF10083 DUF2321: Uncharacteri 21.5 52 0.0011 29.9 1.4 28 342-373 27-54 (158)
167 COG3058 FdhE Uncharacterized p 21.2 1.1E+02 0.0025 30.4 3.7 64 299-366 164-233 (308)
168 PF07191 zinc-ribbons_6: zinc- 20.6 5.5 0.00012 31.3 -4.3 42 324-371 2-43 (70)
169 KOG1925 Rac1 GTPase effector F 20.6 1.3E+02 0.0028 32.5 4.2 38 38-97 225-273 (817)
170 KOG0006 E3 ubiquitin-protein l 20.5 83 0.0018 31.9 2.7 33 320-353 218-252 (446)
171 KOG0956 PHD finger protein AF1 20.3 72 0.0016 35.4 2.4 27 339-366 44-70 (900)
172 PLN02248 cellulose synthase-li 20.0 69 0.0015 37.5 2.3 28 341-369 150-177 (1135)
No 1
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.2e-61 Score=468.53 Aligned_cols=246 Identities=52% Similarity=0.928 Sum_probs=223.3
Q ss_pred CCCCCCccccccceeeeeeeeccCCceeEEEcCCCCceeceEEeeeccccceEEEEEeeecCCCCCcccCCCCCCCCcee
Q 016892 123 VGPPPPYVDHQSAKKVRNDVNVHKHTLKIEVDEENPDHVLVSFVFDALFDGSITVFYFAKEEPNCKFVPLFPEAYMPAKI 202 (381)
Q Consensus 123 ~~~~~~~v~~q~t~tirn~VNlrK~SLrl~~~~~~p~~y~v~FtFDa~~~~sItI~f~a~E~~~~~~~~~~~~~~~~~t~ 202 (381)
..++.+|+ ||+|+||||+||++|++++++.|..+++.|+++|+|||+..|+|||+|||||+..|.++.+.+..+.++|+
T Consensus 100 ~~~~~~~~-~~~av~i~~d~~l~k~~~~l~~d~~~P~~~~~sf~fda~~~g~itV~~fakE~~~c~~~~~~~~~~~~~t~ 178 (349)
T KOG4265|consen 100 CAPPDQYL-HQKAVTIRNDVNLDKETLRLDPDPLTPGLLLLSFTFDALAQGAITVLFFAKEEVLCGLVLLVPDELPSITV 178 (349)
T ss_pred ecCCCccc-cccceeccchhhcccceEEeccCCCCcceeEEEEEeccccCccEEEEEeccccccccccccccccCCCeeE
Confidence 35566799 99999999999999999999999999999999999999999999999999999999999888877899999
Q ss_pred ecCCccCCeeeCCCCCCcCCCCcCcccCCCCCCCCCceeeEEEeeecCCCCCCCCCCCCCCCCCccchhHHHHHHHhcCC
Q 016892 203 PFKKGLGQKFRQPSGTGIDLGFYELDDLSKPSLGEDIFPLVISAETHQPSSSNDGHLDDPVSNTSAHMQITQAVLEKNND 282 (381)
Q Consensus 203 ~F~~Gl~Q~F~qps~~~idl~~~~~~eL~~~~~~~~~~PLvi~~e~~~~~~~~~~~~~~~~~~~~~~~qit~a~~ek~~~ 282 (381)
+|++|++|+|.|++ ++||++.|+++||.+.. ++++|||+|++++...+. . .....+.++|+++.++.++
T Consensus 179 ~f~~gl~Q~F~q~s-~~~D~~~~~~~~L~~~~-~~~vyplsi~~~~~~~~~---~------~~~~~~~~~tq~v~~~~~~ 247 (349)
T KOG4265|consen 179 HFEKGLGQLFLQPS-TGIDFSVMSIDDLSLSL-DRRVYPLSISAEVQPSDV---V------ESMGVFHVITQAVYEKDEK 247 (349)
T ss_pred EcccchhhhhcCCc-cccchhhcchhhhcccc-cCCeeeEEEEEEEecccc---c------cccceeeEEEeeeeccCcC
Confidence 99999999999999 99999999999999965 899999999999984321 1 2234578899999988889
Q ss_pred chhHHHHHhhhhhcCCchhhhHHHhhCCCCCCCCC--CCCCCCCcceecccCCcCeEEeCCCCccccHHHHHHHHhCCCC
Q 016892 283 DLFQVKVIRQILWVDGVRYELREIYGIGNSAAEGF--EDSDPGKECVICMTEPKDTAVLPCRHMCMCGECAKELRLQSNK 360 (381)
Q Consensus 283 ~~~~v~v~kq~l~v~g~~~el~ei~g~~~s~~~~~--~~~~~~~~CvICl~~~~d~vlLPCgH~cfC~~Ca~~l~~~s~~ 360 (381)
|.+.++++||++|++|.+|+|+||||++++..+.. ++.+++++|||||++.+|+++|||||+|+|++|++.|+.+.++
T Consensus 248 G~~~~~~~kQ~~~v~g~~y~LqEiyGien~~v~~~~~~~~~~gkeCVIClse~rdt~vLPCRHLCLCs~Ca~~Lr~q~n~ 327 (349)
T KOG4265|consen 248 GSIKIKVLKQILWVDGTRYLLQEIYGIENSTVEGTDADESESGKECVICLSESRDTVVLPCRHLCLCSGCAKSLRYQTNN 327 (349)
T ss_pred CceeeeeeeeEEEEeCceeeeehhhccccCCCCCCccccccCCCeeEEEecCCcceEEecchhhehhHhHHHHHHHhhcC
Confidence 99999999999999999999999999997764432 2446789999999999999999999999999999999999999
Q ss_pred CccccccccceEEEEcCCCC
Q 016892 361 CPICRQPIEELIEIKINSGD 380 (381)
Q Consensus 361 CPiCR~~I~~~i~I~i~~~~ 380 (381)
|||||+.|+++++|+++.++
T Consensus 328 CPICRqpi~~ll~i~~~~~~ 347 (349)
T KOG4265|consen 328 CPICRQPIEELLEIYVNKED 347 (349)
T ss_pred CCccccchHhhheecccccc
Confidence 99999999999999998765
No 2
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=99.31 E-value=9.4e-13 Score=95.91 Aligned_cols=49 Identities=53% Similarity=1.275 Sum_probs=43.9
Q ss_pred CCcceecccCCcCeEEeCCCCccccHHHHHHHHhCCCCCccccccccce
Q 016892 323 GKECVICMTEPKDTAVLPCRHMCMCGECAKELRLQSNKCPICRQPIEEL 371 (381)
Q Consensus 323 ~~~CvICl~~~~d~vlLPCgH~cfC~~Ca~~l~~~s~~CPiCR~~I~~~ 371 (381)
+.+|.||+++.++++++||||++||..|+.+|+....+||+||+.|+++
T Consensus 2 ~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~~V 50 (50)
T PF13920_consen 2 DEECPICFENPRDVVLLPCGHLCFCEECAERLLKRKKKCPICRQPIESV 50 (50)
T ss_dssp HSB-TTTSSSBSSEEEETTCEEEEEHHHHHHHHHTTSBBTTTTBB-SEE
T ss_pred cCCCccCCccCCceEEeCCCChHHHHHHhHHhcccCCCCCcCChhhcCC
Confidence 4689999999999999999999999999999998889999999999764
No 3
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.29 E-value=2.6e-13 Score=99.75 Aligned_cols=52 Identities=42% Similarity=1.034 Sum_probs=46.7
Q ss_pred CCcceecccCCcCeEEeCCCCccccHHHHHHHHh-CCCCCccccccccceEEE
Q 016892 323 GKECVICMTEPKDTAVLPCRHMCMCGECAKELRL-QSNKCPICRQPIEELIEI 374 (381)
Q Consensus 323 ~~~CvICl~~~~d~vlLPCgH~cfC~~Ca~~l~~-~s~~CPiCR~~I~~~i~I 374 (381)
+.+|.||++...|.|+.-|||+|+|.+|..+++. ....|||||++|..+++.
T Consensus 7 ~dECTICye~pvdsVlYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi~dvIkT 59 (62)
T KOG4172|consen 7 SDECTICYEHPVDSVLYTCGHMCMCYACGLRLKKALHGCCPICRAPIKDVIKT 59 (62)
T ss_pred ccceeeeccCcchHHHHHcchHHhHHHHHHHHHHccCCcCcchhhHHHHHHHh
Confidence 4799999999999999999999999999999665 667899999999988764
No 4
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.94 E-value=1.1e-10 Score=112.35 Aligned_cols=90 Identities=36% Similarity=0.723 Sum_probs=65.8
Q ss_pred CchhHHHHHhhhhhcCCchh-------hhH----HHhhCCCCCCCCCCCCCCCCcceecccCCcCeEEeCCCCccccHHH
Q 016892 282 DDLFQVKVIRQILWVDGVRY-------ELR----EIYGIGNSAAEGFEDSDPGKECVICMTEPKDTAVLPCRHMCMCGEC 350 (381)
Q Consensus 282 ~~~~~v~v~kq~l~v~g~~~-------el~----ei~g~~~s~~~~~~~~~~~~~CvICl~~~~d~vlLPCgH~cfC~~C 350 (381)
...+.++.+|+++.-+++.| ++- ++|. ++..+..........+|.|||+.++|++||+|||++.|..|
T Consensus 249 ~Eg~~v~qLke~l~~d~vsy~gCcek~el~d~vtrl~k-~~~g~~~~~s~~~~~LC~ICmDaP~DCvfLeCGHmVtCt~C 327 (350)
T KOG4275|consen 249 EEGLTVRQLKEILDDDFVSYKGCCEKYELDDRVTRLYK-GNDGEQHSRSLATRRLCAICMDAPRDCVFLECGHMVTCTKC 327 (350)
T ss_pred cccchHHHhhhhhhccCCcccchhHHHHHHHHHHHHHh-cccccccccchhHHHHHHHHhcCCcceEEeecCcEEeehhh
Confidence 35778888898887776655 221 2222 11111111122337899999999999999999999999999
Q ss_pred HHHHHhCCCCCccccccccceEEEEc
Q 016892 351 AKELRLQSNKCPICRQPIEELIEIKI 376 (381)
Q Consensus 351 a~~l~~~s~~CPiCR~~I~~~i~I~i 376 (381)
-+.|. .|||||+.|.++.+|+-
T Consensus 328 Gkrm~----eCPICRqyi~rvvrif~ 349 (350)
T KOG4275|consen 328 GKRMN----ECPICRQYIVRVVRIFR 349 (350)
T ss_pred ccccc----cCchHHHHHHHHHhhhc
Confidence 98875 99999999999888763
No 5
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.89 E-value=1.7e-09 Score=104.28 Aligned_cols=55 Identities=24% Similarity=0.717 Sum_probs=48.8
Q ss_pred CCCCCcceecccCCcCeEEeCCCCccccHHHHHHHHhCCCCCccccccccceEEEE
Q 016892 320 SDPGKECVICMTEPKDTAVLPCRHMCMCGECAKELRLQSNKCPICRQPIEELIEIK 375 (381)
Q Consensus 320 ~~~~~~CvICl~~~~d~vlLPCgH~cfC~~Ca~~l~~~s~~CPiCR~~I~~~i~I~ 375 (381)
.+....|++|++...+...+||||. ||++|+..|......||+||..+...-.|.
T Consensus 236 ~~a~~kC~LCLe~~~~pSaTpCGHi-FCWsCI~~w~~ek~eCPlCR~~~~pskvi~ 290 (293)
T KOG0317|consen 236 PEATRKCSLCLENRSNPSATPCGHI-FCWSCILEWCSEKAECPLCREKFQPSKVIC 290 (293)
T ss_pred CCCCCceEEEecCCCCCCcCcCcch-HHHHHHHHHHccccCCCcccccCCCcceee
Confidence 4567899999999999999999999 999999999998889999999988654443
No 6
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=98.85 E-value=2.9e-09 Score=98.14 Aligned_cols=56 Identities=29% Similarity=0.725 Sum_probs=46.1
Q ss_pred CCCCCcceecccCCcCeEEeCCCCccccHHHHHHHHhC----------------CCCCccccccccceEEEEc
Q 016892 320 SDPGKECVICMTEPKDTAVLPCRHMCMCGECAKELRLQ----------------SNKCPICRQPIEELIEIKI 376 (381)
Q Consensus 320 ~~~~~~CvICl~~~~d~vlLPCgH~cfC~~Ca~~l~~~----------------s~~CPiCR~~I~~~i~I~i 376 (381)
..+..+|.||++..++.++++|||. ||+.|+..|... ..+||+||..|...-.+.+
T Consensus 15 ~~~~~~CpICld~~~dPVvT~CGH~-FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~~LvPi 86 (193)
T PLN03208 15 SGGDFDCNICLDQVRDPVVTLCGHL-FCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEATLVPI 86 (193)
T ss_pred CCCccCCccCCCcCCCcEEcCCCch-hHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChhcEEEe
Confidence 3457899999999999999999999 999999998642 2479999999987444433
No 7
>PHA02929 N1R/p28-like protein; Provisional
Probab=98.82 E-value=3.8e-09 Score=100.68 Aligned_cols=56 Identities=34% Similarity=0.792 Sum_probs=47.4
Q ss_pred CCCCcceecccCCcC--------eEEeCCCCccccHHHHHHHHhCCCCCccccccccceEEEEcC
Q 016892 321 DPGKECVICMTEPKD--------TAVLPCRHMCMCGECAKELRLQSNKCPICRQPIEELIEIKIN 377 (381)
Q Consensus 321 ~~~~~CvICl~~~~d--------~vlLPCgH~cfC~~Ca~~l~~~s~~CPiCR~~I~~~i~I~i~ 377 (381)
..+.+|.||++...+ .++++|+|. ||..|+..|+.+...||+||..+..+++.++-
T Consensus 172 ~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~-FC~~CI~~Wl~~~~tCPlCR~~~~~v~~~r~~ 235 (238)
T PHA02929 172 SKDKECAICMEKVYDKEIKNMYFGILSNCNHV-FCIECIDIWKKEKNTCPVCRTPFISVIKSRFF 235 (238)
T ss_pred CCCCCCccCCcccccCccccccceecCCCCCc-ccHHHHHHHHhcCCCCCCCCCEeeEEeeeeee
Confidence 356799999998654 355689999 99999999999889999999999988877654
No 8
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.80 E-value=5.3e-09 Score=98.18 Aligned_cols=56 Identities=23% Similarity=0.574 Sum_probs=47.5
Q ss_pred CCCCCcceecccCCcCeEEeCCCCccccHHHHHHHHhCC---CCCccccccccceEEEEc
Q 016892 320 SDPGKECVICMTEPKDTAVLPCRHMCMCGECAKELRLQS---NKCPICRQPIEELIEIKI 376 (381)
Q Consensus 320 ~~~~~~CvICl~~~~d~vlLPCgH~cfC~~Ca~~l~~~s---~~CPiCR~~I~~~i~I~i 376 (381)
.....+|.||++..+|.|+..|||+ ||+.|+.+|+... ..||+|++.|...-.|-|
T Consensus 44 ~~~~FdCNICLd~akdPVvTlCGHL-FCWpClyqWl~~~~~~~~cPVCK~~Vs~~~vvPl 102 (230)
T KOG0823|consen 44 DGGFFDCNICLDLAKDPVVTLCGHL-FCWPCLYQWLQTRPNSKECPVCKAEVSIDTVVPL 102 (230)
T ss_pred CCCceeeeeeccccCCCEEeecccc-eehHHHHHHHhhcCCCeeCCccccccccceEEee
Confidence 3567799999999999999999999 9999999998743 458999999987655544
No 9
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=98.77 E-value=2.2e-09 Score=75.93 Aligned_cols=41 Identities=41% Similarity=0.961 Sum_probs=35.3
Q ss_pred CcceecccCC---cCeEEeCCCCccccHHHHHHHHhCCCCCcccc
Q 016892 324 KECVICMTEP---KDTAVLPCRHMCMCGECAKELRLQSNKCPICR 365 (381)
Q Consensus 324 ~~CvICl~~~---~d~vlLPCgH~cfC~~Ca~~l~~~s~~CPiCR 365 (381)
++|.||++.. ...+.++|+|. ||.+|+..|..++.+||+||
T Consensus 1 d~C~IC~~~~~~~~~~~~l~C~H~-fh~~Ci~~~~~~~~~CP~CR 44 (44)
T PF13639_consen 1 DECPICLEEFEDGEKVVKLPCGHV-FHRSCIKEWLKRNNSCPVCR 44 (44)
T ss_dssp -CETTTTCBHHTTSCEEEETTSEE-EEHHHHHHHHHHSSB-TTTH
T ss_pred CCCcCCChhhcCCCeEEEccCCCe-eCHHHHHHHHHhCCcCCccC
Confidence 3799999987 46678899999 99999999999889999998
No 10
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.70 E-value=5.4e-09 Score=103.55 Aligned_cols=55 Identities=36% Similarity=0.886 Sum_probs=48.2
Q ss_pred CCCCCCCcceecccCCcCeEEeCCCCccccHHHHHHHHhCCCCCccccccccceEEEEc
Q 016892 318 EDSDPGKECVICMTEPKDTAVLPCRHMCMCGECAKELRLQSNKCPICRQPIEELIEIKI 376 (381)
Q Consensus 318 ~~~~~~~~CvICl~~~~d~vlLPCgH~cfC~~Ca~~l~~~s~~CPiCR~~I~~~i~I~i 376 (381)
.+......|+||++++.+++++||||+|.|..|.+.+. .||+||+.|..+++++.
T Consensus 300 ~~~~~p~lcVVcl~e~~~~~fvpcGh~ccct~cs~~l~----~CPvCR~rI~~~~k~y~ 354 (355)
T KOG1571|consen 300 RELPQPDLCVVCLDEPKSAVFVPCGHVCCCTLCSKHLP----QCPVCRQRIRLVRKRYR 354 (355)
T ss_pred cccCCCCceEEecCCccceeeecCCcEEEchHHHhhCC----CCchhHHHHHHHHHHhc
Confidence 34556789999999999999999999999999998875 69999999998877653
No 11
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=98.68 E-value=9.8e-09 Score=70.96 Aligned_cols=38 Identities=42% Similarity=1.085 Sum_probs=33.4
Q ss_pred ceecccCCcCe-EEeCCCCccccHHHHHHHHhCCCCCccc
Q 016892 326 CVICMTEPKDT-AVLPCRHMCMCGECAKELRLQSNKCPIC 364 (381)
Q Consensus 326 CvICl~~~~d~-vlLPCgH~cfC~~Ca~~l~~~s~~CPiC 364 (381)
|.||++..++. ++++|||. ||.+|+.+|..+..+||+|
T Consensus 1 C~iC~~~~~~~~~~~~CGH~-fC~~C~~~~~~~~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRDPVVVTPCGHS-FCKECIEKYLEKNPKCPVC 39 (39)
T ss_dssp ETTTTSB-SSEEEECTTSEE-EEHHHHHHHHHCTSB-TTT
T ss_pred CCCCCCcccCcCEECCCCCc-hhHHHHHHHHHCcCCCcCC
Confidence 88999999999 57899999 9999999998888899998
No 12
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=98.67 E-value=5.1e-08 Score=104.02 Aligned_cols=12 Identities=17% Similarity=0.332 Sum_probs=7.1
Q ss_pred ceeeeeeeeccC
Q 016892 135 AKKVRNDVNVHK 146 (381)
Q Consensus 135 t~tirn~VNlrK 146 (381)
-+.-|-.|-+||
T Consensus 617 KK~~k~e~~Mrr 628 (1102)
T KOG1924|consen 617 KKVYKPEVPMRR 628 (1102)
T ss_pred cccCCCCCcccc
Confidence 345566666666
No 13
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=98.48 E-value=8.9e-08 Score=67.57 Aligned_cols=38 Identities=39% Similarity=0.935 Sum_probs=30.1
Q ss_pred ceecccCCcCeEEeCCCCccccHHHHHHHHhCC----CCCccc
Q 016892 326 CVICMTEPKDTAVLPCRHMCMCGECAKELRLQS----NKCPIC 364 (381)
Q Consensus 326 CvICl~~~~d~vlLPCgH~cfC~~Ca~~l~~~s----~~CPiC 364 (381)
|.||++.+++.+.|+|||. ||..|+..|+... ..||+|
T Consensus 1 CpiC~~~~~~Pv~l~CGH~-FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKDPVSLPCGHS-FCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SSEEE-SSSSE-EEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhCCccccCCcCH-HHHHHHHHHHHccCCcCCCCcCC
Confidence 7899999999999999999 9999999977643 259987
No 14
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=98.48 E-value=1.1e-07 Score=65.42 Aligned_cols=43 Identities=44% Similarity=1.112 Sum_probs=36.1
Q ss_pred cceecccCCcCeEEe-CCCCccccHHHHHHHHhC-CCCCccccccc
Q 016892 325 ECVICMTEPKDTAVL-PCRHMCMCGECAKELRLQ-SNKCPICRQPI 368 (381)
Q Consensus 325 ~CvICl~~~~d~vlL-PCgH~cfC~~Ca~~l~~~-s~~CPiCR~~I 368 (381)
+|.||++...+.+.+ +|+|. ||..|++.|..+ ..+||+||..+
T Consensus 1 ~C~iC~~~~~~~~~~~~C~H~-~c~~C~~~~~~~~~~~Cp~C~~~~ 45 (45)
T cd00162 1 ECPICLEEFREPVVLLPCGHV-FCRSCIDKWLKSGKNTCPLCRTPI 45 (45)
T ss_pred CCCcCchhhhCceEecCCCCh-hcHHHHHHHHHhCcCCCCCCCCcC
Confidence 589999998666555 59999 999999998876 67899999764
No 15
>PHA02926 zinc finger-like protein; Provisional
Probab=98.47 E-value=7.7e-08 Score=90.08 Aligned_cols=53 Identities=26% Similarity=0.580 Sum_probs=41.2
Q ss_pred CCCCcceecccCC---------cCeEEeCCCCccccHHHHHHHHhCC------CCCccccccccceEEE
Q 016892 321 DPGKECVICMTEP---------KDTAVLPCRHMCMCGECAKELRLQS------NKCPICRQPIEELIEI 374 (381)
Q Consensus 321 ~~~~~CvICl~~~---------~d~vlLPCgH~cfC~~Ca~~l~~~s------~~CPiCR~~I~~~i~I 374 (381)
..+.+|.|||+.. +-.++.+|+|. ||..|+..|+... ..||+||..+..+..-
T Consensus 168 SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHs-FCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~~I~pS 235 (242)
T PHA02926 168 SKEKECGICYEVVYSKRLENDRYFGLLDSCNHI-FCITCINIWHRTRRETGASDNCPICRTRFRNITMS 235 (242)
T ss_pred cCCCCCccCccccccccccccccccccCCCCch-HHHHHHHHHHHhccccCcCCcCCCCcceeeeeccc
Confidence 3568999999863 12466789999 9999999999742 4599999988865543
No 16
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.45 E-value=1e-07 Score=86.31 Aligned_cols=50 Identities=30% Similarity=0.780 Sum_probs=42.5
Q ss_pred CCCCcceecccCCcCeE--EeCCCCccccHHHHHHHHhCCCCCccccccccce
Q 016892 321 DPGKECVICMTEPKDTA--VLPCRHMCMCGECAKELRLQSNKCPICRQPIEEL 371 (381)
Q Consensus 321 ~~~~~CvICl~~~~d~v--lLPCgH~cfC~~Ca~~l~~~s~~CPiCR~~I~~~ 371 (381)
+....|.|||+....-+ -.-|||+ ||..|++.++....+||+||..|+..
T Consensus 129 ~~~~~CPiCl~~~sek~~vsTkCGHv-FC~~Cik~alk~~~~CP~C~kkIt~k 180 (187)
T KOG0320|consen 129 EGTYKCPICLDSVSEKVPVSTKCGHV-FCSQCIKDALKNTNKCPTCRKKITHK 180 (187)
T ss_pred ccccCCCceecchhhccccccccchh-HHHHHHHHHHHhCCCCCCcccccchh
Confidence 34578999999876655 3679999 99999999999999999999888764
No 17
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=98.36 E-value=2.7e-07 Score=65.47 Aligned_cols=41 Identities=39% Similarity=0.996 Sum_probs=34.7
Q ss_pred cceecccCC---cCeEEeCCCCccccHHHHHHHHhCCCCCccccc
Q 016892 325 ECVICMTEP---KDTAVLPCRHMCMCGECAKELRLQSNKCPICRQ 366 (381)
Q Consensus 325 ~CvICl~~~---~d~vlLPCgH~cfC~~Ca~~l~~~s~~CPiCR~ 366 (381)
.|.||++.+ +...++.|||. ||..|+..+......||+||+
T Consensus 1 ~C~~C~~~~~~~~~~~l~~CgH~-~C~~C~~~~~~~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTSCGHI-FCEKCLKKLKGKSVKCPICRK 44 (44)
T ss_pred CCcCcCccccCCCCeEEcccCCH-HHHHHHHhhcCCCCCCcCCCC
Confidence 488999887 45678899999 999999998755678999985
No 18
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.33 E-value=2.7e-07 Score=93.90 Aligned_cols=51 Identities=27% Similarity=0.607 Sum_probs=45.9
Q ss_pred CCCCCCcceecccCCcCeEEeCCCCccccHHHHHHHHhCCCCCccccccccc
Q 016892 319 DSDPGKECVICMTEPKDTAVLPCRHMCMCGECAKELRLQSNKCPICRQPIEE 370 (381)
Q Consensus 319 ~~~~~~~CvICl~~~~d~vlLPCgH~cfC~~Ca~~l~~~s~~CPiCR~~I~~ 370 (381)
..+....|.||++.+.+.++++|+|. ||..|+..|+.....||+||..+..
T Consensus 22 ~Le~~l~C~IC~d~~~~PvitpCgH~-FCs~CI~~~l~~~~~CP~Cr~~~~~ 72 (397)
T TIGR00599 22 PLDTSLRCHICKDFFDVPVLTSCSHT-FCSLCIRRCLSNQPKCPLCRAEDQE 72 (397)
T ss_pred ccccccCCCcCchhhhCccCCCCCCc-hhHHHHHHHHhCCCCCCCCCCcccc
Confidence 45567899999999999999999999 9999999988777789999998865
No 19
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=98.33 E-value=4.8e-07 Score=60.12 Aligned_cols=38 Identities=47% Similarity=1.126 Sum_probs=34.2
Q ss_pred ceecccCCcCeEEeCCCCccccHHHHHHHHh-CCCCCccc
Q 016892 326 CVICMTEPKDTAVLPCRHMCMCGECAKELRL-QSNKCPIC 364 (381)
Q Consensus 326 CvICl~~~~d~vlLPCgH~cfC~~Ca~~l~~-~s~~CPiC 364 (381)
|.||++..++.++++|+|. ||..|++.|.. ...+||+|
T Consensus 1 C~iC~~~~~~~~~~~C~H~-~c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEELKDPVVLPCGHT-FCRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcCccCCCCcEEecCCCh-HHHHHHHHHHHhCcCCCCCC
Confidence 7899999999999999999 99999999876 55679987
No 20
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=98.31 E-value=3.5e-07 Score=63.38 Aligned_cols=38 Identities=39% Similarity=1.026 Sum_probs=34.2
Q ss_pred ceecccCCcCeE-EeCCCCccccHHHHHHHHh--CCCCCccc
Q 016892 326 CVICMTEPKDTA-VLPCRHMCMCGECAKELRL--QSNKCPIC 364 (381)
Q Consensus 326 CvICl~~~~d~v-lLPCgH~cfC~~Ca~~l~~--~s~~CPiC 364 (381)
|.||++...+.+ +++|||. ||..|+.+|+. ....||+|
T Consensus 1 C~iC~~~~~~~~~~~~C~H~-fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDPVILLPCGHS-FCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSEEEETTTSEE-EEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccCCCEEecCCCc-chHHHHHHHHHhcCCccCCcC
Confidence 789999999998 8899999 99999999877 45679988
No 21
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=98.31 E-value=6e-07 Score=67.53 Aligned_cols=46 Identities=22% Similarity=0.348 Sum_probs=42.3
Q ss_pred CcceecccCCcCeEEeCCCCccccHHHHHHHHhCCCCCccccccccc
Q 016892 324 KECVICMTEPKDTAVLPCRHMCMCGECAKELRLQSNKCPICRQPIEE 370 (381)
Q Consensus 324 ~~CvICl~~~~d~vlLPCgH~cfC~~Ca~~l~~~s~~CPiCR~~I~~ 370 (381)
..|.||++...+.++++|||. ||..|+..|..+...||+|+..+..
T Consensus 2 ~~Cpi~~~~~~~Pv~~~~G~v-~~~~~i~~~~~~~~~cP~~~~~~~~ 47 (63)
T smart00504 2 FLCPISLEVMKDPVILPSGQT-YERRAIEKWLLSHGTDPVTGQPLTH 47 (63)
T ss_pred cCCcCCCCcCCCCEECCCCCE-EeHHHHHHHHHHCCCCCCCcCCCCh
Confidence 479999999999999999999 9999999988777889999998854
No 22
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.26 E-value=6.3e-07 Score=89.48 Aligned_cols=49 Identities=27% Similarity=0.710 Sum_probs=41.6
Q ss_pred CcceecccCCcCe---EEeCCCCccccHHHHHHHHhCCCC-CccccccccceEE
Q 016892 324 KECVICMTEPKDT---AVLPCRHMCMCGECAKELRLQSNK-CPICRQPIEELIE 373 (381)
Q Consensus 324 ~~CvICl~~~~d~---vlLPCgH~cfC~~Ca~~l~~~s~~-CPiCR~~I~~~i~ 373 (381)
..|+||+++++.- .+|||+|. |+..|++.|..+.++ ||+|++.+.....
T Consensus 230 ~~CaIClEdY~~GdklRiLPC~H~-FH~~CIDpWL~~~r~~CPvCK~di~~~~~ 282 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILPCSHK-FHVNCIDPWLTQTRTFCPVCKRDIRTDSG 282 (348)
T ss_pred ceEEEeecccccCCeeeEecCCCc-hhhccchhhHhhcCccCCCCCCcCCCCCC
Confidence 6999999988543 67999999 999999999988855 9999998876543
No 23
>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.23 E-value=3.2e-07 Score=86.02 Aligned_cols=48 Identities=40% Similarity=1.061 Sum_probs=42.7
Q ss_pred CcceecccCCcCeEEeCCCCccccHHHHHHHHhCCCCCccccccccceEEEE
Q 016892 324 KECVICMTEPKDTAVLPCRHMCMCGECAKELRLQSNKCPICRQPIEELIEIK 375 (381)
Q Consensus 324 ~~CvICl~~~~d~vlLPCgH~cfC~~Ca~~l~~~s~~CPiCR~~I~~~i~I~ 375 (381)
..|.+|.++...+++|||+|+|+|..|...+ ..||||+..+.+.++++
T Consensus 159 ~~Cr~C~~~~~~VlllPCrHl~lC~~C~~~~----~~CPiC~~~~~s~~~v~ 206 (207)
T KOG1100|consen 159 RSCRKCGEREATVLLLPCRHLCLCGICDESL----RICPICRSPKTSSVEVN 206 (207)
T ss_pred ccceecCcCCceEEeecccceEecccccccC----ccCCCCcChhhceeecc
Confidence 3499999999999999999999999998763 37999999999988765
No 24
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=98.23 E-value=8.9e-07 Score=69.70 Aligned_cols=41 Identities=32% Similarity=0.716 Sum_probs=33.3
Q ss_pred CcceecccCC-------------cCeEEeCCCCccccHHHHHHHHhCCCCCcccc
Q 016892 324 KECVICMTEP-------------KDTAVLPCRHMCMCGECAKELRLQSNKCPICR 365 (381)
Q Consensus 324 ~~CvICl~~~-------------~d~vlLPCgH~cfC~~Ca~~l~~~s~~CPiCR 365 (381)
..|.||++.. ...++..|||. |+..|+.+|+..+..||+||
T Consensus 20 d~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~-FH~~Ci~~Wl~~~~~CP~CR 73 (73)
T PF12678_consen 20 DNCAICREPLEDPCPECQAPQDECPIVWGPCGHI-FHFHCISQWLKQNNTCPLCR 73 (73)
T ss_dssp SBETTTTSBTTSTTCCHHHCTTTS-EEEETTSEE-EEHHHHHHHHTTSSB-TTSS
T ss_pred CcccccChhhhChhhhhcCCccccceEecccCCC-EEHHHHHHHHhcCCcCCCCC
Confidence 3599999877 22245589999 99999999999999999998
No 25
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.21 E-value=8.6e-07 Score=86.22 Aligned_cols=50 Identities=44% Similarity=0.885 Sum_probs=41.8
Q ss_pred CCCCCCcceecccCCc---CeEEeCCCCccccHHHHHHHHh-CCCCCcccccccc
Q 016892 319 DSDPGKECVICMTEPK---DTAVLPCRHMCMCGECAKELRL-QSNKCPICRQPIE 369 (381)
Q Consensus 319 ~~~~~~~CvICl~~~~---d~vlLPCgH~cfC~~Ca~~l~~-~s~~CPiCR~~I~ 369 (381)
+.+.+-+|+|||+++. ..++|||.|. |+..|+++|.. -+++||+||.+|-
T Consensus 319 ea~~GveCaICms~fiK~d~~~vlPC~H~-FH~~Cv~kW~~~y~~~CPvCrt~iP 372 (374)
T COG5540 319 EADKGVECAICMSNFIKNDRLRVLPCDHR-FHVGCVDKWLLGYSNKCPVCRTAIP 372 (374)
T ss_pred hcCCCceEEEEhhhhcccceEEEeccCce-echhHHHHHHhhhcccCCccCCCCC
Confidence 3456789999999873 3478899999 99999999987 5678999999874
No 26
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=98.20 E-value=1.1e-06 Score=87.45 Aligned_cols=48 Identities=35% Similarity=0.877 Sum_probs=40.9
Q ss_pred CCCCCcceecccCC-------------cCeEEeCCCCccccHHHHHHHHhCCCCCccccccc
Q 016892 320 SDPGKECVICMTEP-------------KDTAVLPCRHMCMCGECAKELRLQSNKCPICRQPI 368 (381)
Q Consensus 320 ~~~~~~CvICl~~~-------------~d~vlLPCgH~cfC~~Ca~~l~~~s~~CPiCR~~I 368 (381)
..+++.|.|||++. +..--|||||. +..+|++.|..++..|||||.++
T Consensus 284 ~n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHi-lHl~CLknW~ERqQTCPICr~p~ 344 (491)
T COG5243 284 TNSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHI-LHLHCLKNWLERQQTCPICRRPV 344 (491)
T ss_pred cCCCCeEEEecccccCCCCccCcccccCCcccccccce-eeHHHHHHHHHhccCCCcccCcc
Confidence 35678999999983 22256899999 99999999999999999999984
No 27
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.13 E-value=1.4e-06 Score=89.86 Aligned_cols=55 Identities=33% Similarity=0.748 Sum_probs=47.5
Q ss_pred CCcceecccCCcCeEEeCCCCccccHHHHHHHHhCC-----CCCccccccccc--eEEEEcCC
Q 016892 323 GKECVICMTEPKDTAVLPCRHMCMCGECAKELRLQS-----NKCPICRQPIEE--LIEIKINS 378 (381)
Q Consensus 323 ~~~CvICl~~~~d~vlLPCgH~cfC~~Ca~~l~~~s-----~~CPiCR~~I~~--~i~I~i~~ 378 (381)
+..|.||++.+..++++.|||. ||..|+-+.+..+ ..|||||..|.. +..|++.+
T Consensus 186 ~~~CPICL~~~~~p~~t~CGHi-FC~~CiLqy~~~s~~~~~~~CPiC~s~I~~kdl~pv~~e~ 247 (513)
T KOG2164|consen 186 DMQCPICLEPPSVPVRTNCGHI-FCGPCILQYWNYSAIKGPCSCPICRSTITLKDLLPVFIED 247 (513)
T ss_pred CCcCCcccCCCCcccccccCce-eeHHHHHHHHhhhcccCCccCCchhhhccccceeeeeecc
Confidence 7799999999999999999999 9999999965533 579999999998 77777754
No 28
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.12 E-value=1.3e-06 Score=83.56 Aligned_cols=49 Identities=27% Similarity=0.720 Sum_probs=42.6
Q ss_pred CCCCcceecccCCcCeEEeCCCCccccHHHHHH-HHhCCC-CCccccccccc
Q 016892 321 DPGKECVICMTEPKDTAVLPCRHMCMCGECAKE-LRLQSN-KCPICRQPIEE 370 (381)
Q Consensus 321 ~~~~~CvICl~~~~d~vlLPCgH~cfC~~Ca~~-l~~~s~-~CPiCR~~I~~ 370 (381)
..+..|.||++...+...++|||+ ||..|+-. |..+.. .||+||+.+.-
T Consensus 213 ~~d~kC~lC~e~~~~ps~t~CgHl-FC~~Cl~~~~t~~k~~~CplCRak~~p 263 (271)
T COG5574 213 LADYKCFLCLEEPEVPSCTPCGHL-FCLSCLLISWTKKKYEFCPLCRAKVYP 263 (271)
T ss_pred ccccceeeeecccCCcccccccch-hhHHHHHHHHHhhccccCchhhhhccc
Confidence 347789999999999999999999 99999999 776654 49999998764
No 29
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=98.00 E-value=1.4e-06 Score=85.79 Aligned_cols=50 Identities=26% Similarity=0.614 Sum_probs=45.7
Q ss_pred CCCCcceecccCCcCeEEeCCCCccccHHHHHHHHhCCCCCccccccccce
Q 016892 321 DPGKECVICMTEPKDTAVLPCRHMCMCGECAKELRLQSNKCPICRQPIEEL 371 (381)
Q Consensus 321 ~~~~~CvICl~~~~d~vlLPCgH~cfC~~Ca~~l~~~s~~CPiCR~~I~~~ 371 (381)
++...|.||++-++..++.||+|. ||+-|++..+.....||.|+..+++.
T Consensus 21 D~lLRC~IC~eyf~ip~itpCsHt-fCSlCIR~~L~~~p~CP~C~~~~~Es 70 (442)
T KOG0287|consen 21 DDLLRCGICFEYFNIPMITPCSHT-FCSLCIRKFLSYKPQCPTCCVTVTES 70 (442)
T ss_pred HHHHHHhHHHHHhcCceeccccch-HHHHHHHHHhccCCCCCceecccchh
Confidence 456799999999999999999999 99999999888889999999998864
No 30
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=98.00 E-value=2.3e-06 Score=85.84 Aligned_cols=54 Identities=30% Similarity=0.695 Sum_probs=46.6
Q ss_pred CCCcceecccCCcCeEEeCCCCccccHHHHHHHHhC--CCCCccccccccceEEEEc
Q 016892 322 PGKECVICMTEPKDTAVLPCRHMCMCGECAKELRLQ--SNKCPICRQPIEELIEIKI 376 (381)
Q Consensus 322 ~~~~CvICl~~~~d~vlLPCgH~cfC~~Ca~~l~~~--s~~CPiCR~~I~~~i~I~i 376 (381)
.-.+|.||-++.+|+-+-||||+ +|..|+..|... +..||.||.+|...-.|.|
T Consensus 368 TFeLCKICaendKdvkIEPCGHL-lCt~CLa~WQ~sd~gq~CPFCRcEIKGte~vii 423 (563)
T KOG1785|consen 368 TFELCKICAENDKDVKIEPCGHL-LCTSCLAAWQDSDEGQTCPFCRCEIKGTEPVII 423 (563)
T ss_pred hHHHHHHhhccCCCcccccccch-HHHHHHHhhcccCCCCCCCceeeEeccccceee
Confidence 34689999999999999999999 999999999853 4679999999998755544
No 31
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=97.97 E-value=3.1e-06 Score=60.12 Aligned_cols=31 Identities=39% Similarity=0.920 Sum_probs=20.7
Q ss_pred ceecccCCcC----eEEeCCCCccccHHHHHHHHhCC
Q 016892 326 CVICMTEPKD----TAVLPCRHMCMCGECAKELRLQS 358 (381)
Q Consensus 326 CvICl~~~~d----~vlLPCgH~cfC~~Ca~~l~~~s 358 (381)
|.||.+ +.+ .++|+|||. ||.+|+++|..++
T Consensus 1 CpIc~e-~~~~~n~P~~L~CGH~-~c~~cl~~l~~~~ 35 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPCGHV-FCKDCLQKLSKKS 35 (43)
T ss_dssp -TTT-----TTSS-EEE-SSS-E-EEHHHHHHHHHH-
T ss_pred CCcccc-ccCCCCCCEEEeCccH-HHHHHHHHHHhcC
Confidence 789998 777 799999999 9999999988743
No 32
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.92 E-value=3.5e-06 Score=89.46 Aligned_cols=49 Identities=27% Similarity=0.706 Sum_probs=43.7
Q ss_pred CCCCcceecccCCcC-----eEEeCCCCccccHHHHHHHHhCCCCCccccccccc
Q 016892 321 DPGKECVICMTEPKD-----TAVLPCRHMCMCGECAKELRLQSNKCPICRQPIEE 370 (381)
Q Consensus 321 ~~~~~CvICl~~~~d-----~vlLPCgH~cfC~~Ca~~l~~~s~~CPiCR~~I~~ 370 (381)
..+..|.||++.... ...|+|+|. ||..|++.|..+...||+||..+..
T Consensus 289 ~~~~~C~IC~e~l~~~~~~~~~rL~C~Hi-fh~~CL~~W~er~qtCP~CR~~~~~ 342 (543)
T KOG0802|consen 289 LSDELCIICLEELHSGHNITPKRLPCGHI-FHDSCLRSWFERQQTCPTCRTVLYD 342 (543)
T ss_pred hcCCeeeeechhhccccccccceeecccc-hHHHHHHHHHHHhCcCCcchhhhhc
Confidence 457899999999888 789999999 9999999999999999999995443
No 33
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.87 E-value=4e-06 Score=78.37 Aligned_cols=46 Identities=28% Similarity=0.733 Sum_probs=40.5
Q ss_pred CCCCCcceecccCCcCeEEeCCCCccccHHHHHHHHhCCCCCccccc
Q 016892 320 SDPGKECVICMTEPKDTAVLPCRHMCMCGECAKELRLQSNKCPICRQ 366 (381)
Q Consensus 320 ~~~~~~CvICl~~~~d~vlLPCgH~cfC~~Ca~~l~~~s~~CPiCR~ 366 (381)
..+...|.||++.+++.++++|+|. ||..|+..++.....||.||.
T Consensus 10 ~~~~~~C~iC~~~~~~p~~l~C~H~-~c~~C~~~~~~~~~~Cp~cr~ 55 (386)
T KOG2177|consen 10 LQEELTCPICLEYFREPVLLPCGHN-FCRACLTRSWEGPLSCPVCRP 55 (386)
T ss_pred ccccccChhhHHHhhcCccccccch-HhHHHHHHhcCCCcCCcccCC
Confidence 4567899999999999999999999 999999997764468999994
No 34
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=97.83 E-value=5.6e-06 Score=80.24 Aligned_cols=50 Identities=26% Similarity=0.509 Sum_probs=45.0
Q ss_pred CCCCcceecccCCcCeEEeCCCCccccHHHHHHHHhCCCCCccccccccce
Q 016892 321 DPGKECVICMTEPKDTAVLPCRHMCMCGECAKELRLQSNKCPICRQPIEEL 371 (381)
Q Consensus 321 ~~~~~CvICl~~~~d~vlLPCgH~cfC~~Ca~~l~~~s~~CPiCR~~I~~~ 371 (381)
+....|.||-+.++..++.+|||. ||+-|++..+.....||+||....+.
T Consensus 23 Ds~lrC~IC~~~i~ip~~TtCgHt-FCslCIR~hL~~qp~CP~Cr~~~~es 72 (391)
T COG5432 23 DSMLRCRICDCRISIPCETTCGHT-FCSLCIRRHLGTQPFCPVCREDPCES 72 (391)
T ss_pred hhHHHhhhhhheeecceecccccc-hhHHHHHHHhcCCCCCccccccHHhh
Confidence 456799999999999999999999 99999999888888999999987654
No 35
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=97.73 E-value=6.6e-06 Score=88.48 Aligned_cols=54 Identities=28% Similarity=0.681 Sum_probs=45.5
Q ss_pred CCCCcceecccCCcCeEEeCCCCccccHHHHHH-HHhCCCCCccccccccc--eEEEE
Q 016892 321 DPGKECVICMTEPKDTAVLPCRHMCMCGECAKE-LRLQSNKCPICRQPIEE--LIEIK 375 (381)
Q Consensus 321 ~~~~~CvICl~~~~d~vlLPCgH~cfC~~Ca~~-l~~~s~~CPiCR~~I~~--~i~I~ 375 (381)
..-..|.+|.++.+|+++.-|+|+ ||..|++. +..+..+||.|.+.|.. ++.|+
T Consensus 641 K~~LkCs~Cn~R~Kd~vI~kC~H~-FC~~Cvq~r~etRqRKCP~Cn~aFganDv~~I~ 697 (698)
T KOG0978|consen 641 KELLKCSVCNTRWKDAVITKCGHV-FCEECVQTRYETRQRKCPKCNAAFGANDVHRIH 697 (698)
T ss_pred HhceeCCCccCchhhHHHHhcchH-HHHHHHHHHHHHhcCCCCCCCCCCCcccccccC
Confidence 456899999999999999999999 99999998 44467899999999875 34444
No 36
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=97.72 E-value=2.1e-05 Score=61.77 Aligned_cols=49 Identities=24% Similarity=0.295 Sum_probs=39.8
Q ss_pred CCCcceecccCCcCeEEeCCCCccccHHHHHHHHhC-CCCCccccccccce
Q 016892 322 PGKECVICMTEPKDTAVLPCRHMCMCGECAKELRLQ-SNKCPICRQPIEEL 371 (381)
Q Consensus 322 ~~~~CvICl~~~~d~vlLPCgH~cfC~~Ca~~l~~~-s~~CPiCR~~I~~~ 371 (381)
+...|.||.+-++|.++++|||. |+..|+..|..+ ...||+||+.+...
T Consensus 3 ~~f~CpIt~~lM~dPVi~~~G~t-yer~~I~~~l~~~~~~~P~t~~~l~~~ 52 (73)
T PF04564_consen 3 DEFLCPITGELMRDPVILPSGHT-YERSAIERWLEQNGGTDPFTRQPLSES 52 (73)
T ss_dssp GGGB-TTTSSB-SSEEEETTSEE-EEHHHHHHHHCTTSSB-TTT-SB-SGG
T ss_pred cccCCcCcCcHhhCceeCCcCCE-EcHHHHHHHHHcCCCCCCCCCCcCCcc
Confidence 35689999999999999999999 999999999988 78899999998863
No 37
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.69 E-value=1.6e-05 Score=77.59 Aligned_cols=52 Identities=33% Similarity=0.678 Sum_probs=44.1
Q ss_pred CCCcceecccCCcCeEEeCCCCccccHHHHHHHH-hCCCCCccccccccceEEE
Q 016892 322 PGKECVICMTEPKDTAVLPCRHMCMCGECAKELR-LQSNKCPICRQPIEELIEI 374 (381)
Q Consensus 322 ~~~~CvICl~~~~d~vlLPCgH~cfC~~Ca~~l~-~~s~~CPiCR~~I~~~i~I 374 (381)
...+|.||+....-.+.|+|+|. ||..|++... .....|++||.+|.+.|..
T Consensus 6 ~~~eC~IC~nt~n~Pv~l~C~Hk-FCyiCiKGsy~ndk~~CavCR~pids~i~~ 58 (324)
T KOG0824|consen 6 KKKECLICYNTGNCPVNLYCFHK-FCYICIKGSYKNDKKTCAVCRFPIDSTIDF 58 (324)
T ss_pred cCCcceeeeccCCcCccccccch-hhhhhhcchhhcCCCCCceecCCCCcchhc
Confidence 46799999999999999999999 9999999844 3445699999999986543
No 38
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=97.56 E-value=7e-05 Score=74.30 Aligned_cols=53 Identities=32% Similarity=0.775 Sum_probs=45.4
Q ss_pred CCCCCcceecccCCcCeEEeCCCCccccHHHHHHHH--hCCCCCccccccccceEE
Q 016892 320 SDPGKECVICMTEPKDTAVLPCRHMCMCGECAKELR--LQSNKCPICRQPIEELIE 373 (381)
Q Consensus 320 ~~~~~~CvICl~~~~d~vlLPCgH~cfC~~Ca~~l~--~~s~~CPiCR~~I~~~i~ 373 (381)
+++...|+||-....-..++||+|. +|..|+-+++ .....|++||..-+.++-
T Consensus 58 DEen~~C~ICA~~~TYs~~~PC~H~-~CH~Ca~RlRALY~~K~C~~CrTE~e~V~f 112 (493)
T COG5236 58 DEENMNCQICAGSTTYSARYPCGHQ-ICHACAVRLRALYMQKGCPLCRTETEAVVF 112 (493)
T ss_pred ccccceeEEecCCceEEEeccCCch-HHHHHHHHHHHHHhccCCCccccccceEEE
Confidence 4567799999999999999999999 9999998864 466789999998887653
No 39
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.53 E-value=4e-05 Score=76.89 Aligned_cols=51 Identities=37% Similarity=0.784 Sum_probs=42.0
Q ss_pred CCCCcceecccCCcCeE-----E---eCCCCccccHHHHHHHH--hC-----CCCCccccccccceE
Q 016892 321 DPGKECVICMTEPKDTA-----V---LPCRHMCMCGECAKELR--LQ-----SNKCPICRQPIEELI 372 (381)
Q Consensus 321 ~~~~~CvICl~~~~d~v-----l---LPCgH~cfC~~Ca~~l~--~~-----s~~CPiCR~~I~~~i 372 (381)
..+.+|.|||+...+.. + .+|.|. ||..|++.|+ .+ +..||+||.....++
T Consensus 159 s~~k~CGICme~i~ek~~~~~rfgilpnC~H~-~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~~v~ 224 (344)
T KOG1039|consen 159 SSEKECGICMETINEKAASERRFGILPNCNHS-FCLNCIRKWRQATQFESKTSKSCPFCRVPSSFVN 224 (344)
T ss_pred cccccceehhhhccccchhhhhcccCCCcchh-hhhcHhHhhhhhhccccccccCCCcccCcccccc
Confidence 35789999999876665 4 569999 9999999999 45 478999999887665
No 40
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.48 E-value=7.9e-05 Score=73.59 Aligned_cols=47 Identities=28% Similarity=0.722 Sum_probs=35.1
Q ss_pred CCcceecccCC---cCe-EEe-CCCCccccHHHHHHHHh-CCCCCccccccccc
Q 016892 323 GKECVICMTEP---KDT-AVL-PCRHMCMCGECAKELRL-QSNKCPICRQPIEE 370 (381)
Q Consensus 323 ~~~CvICl~~~---~d~-vlL-PCgH~cfC~~Ca~~l~~-~s~~CPiCR~~I~~ 370 (381)
+..|.||.+.. .+. +++ .|||. ||..|+..++. ....||.|+..+..
T Consensus 3 ~~~CP~Ck~~~y~np~~kl~i~~CGH~-~C~sCv~~l~~~~~~~CP~C~~~lrk 55 (309)
T TIGR00570 3 DQGCPRCKTTKYRNPSLKLMVNVCGHT-LCESCVDLLFVRGSGSCPECDTPLRK 55 (309)
T ss_pred CCCCCcCCCCCccCcccccccCCCCCc-ccHHHHHHHhcCCCCCCCCCCCccch
Confidence 45899999842 222 222 79999 99999999654 44679999988775
No 41
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.43 E-value=1.3e-05 Score=79.61 Aligned_cols=58 Identities=31% Similarity=0.654 Sum_probs=48.6
Q ss_pred CCCCcceecccCCcCeEEeC-CCCccccHHHHHH-HHhCCCCCccccccccceEEEEcCCC
Q 016892 321 DPGKECVICMTEPKDTAVLP-CRHMCMCGECAKE-LRLQSNKCPICRQPIEELIEIKINSG 379 (381)
Q Consensus 321 ~~~~~CvICl~~~~d~vlLP-CgH~cfC~~Ca~~-l~~~s~~CPiCR~~I~~~i~I~i~~~ 379 (381)
..+..|.||++-.+.++... |.|. ||++|+.. ++...+.||.||+.+.+...+.+..+
T Consensus 41 ~~~v~c~icl~llk~tmttkeClhr-fc~~ci~~a~r~gn~ecptcRk~l~SkrsLr~Dp~ 100 (381)
T KOG0311|consen 41 DIQVICPICLSLLKKTMTTKECLHR-FCFDCIWKALRSGNNECPTCRKKLVSKRSLRIDPN 100 (381)
T ss_pred hhhhccHHHHHHHHhhcccHHHHHH-HHHHHHHHHHHhcCCCCchHHhhccccccCCCCcc
Confidence 34679999999998887765 9999 99999998 66667889999999998887776543
No 42
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=97.37 E-value=0.00017 Score=58.50 Aligned_cols=46 Identities=28% Similarity=0.577 Sum_probs=33.8
Q ss_pred CCcceecccCCc-----------Ce--EEeCCCCccccHHHHHHHHhC---CCCCcccccccc
Q 016892 323 GKECVICMTEPK-----------DT--AVLPCRHMCMCGECAKELRLQ---SNKCPICRQPIE 369 (381)
Q Consensus 323 ~~~CvICl~~~~-----------d~--vlLPCgH~cfC~~Ca~~l~~~---s~~CPiCR~~I~ 369 (381)
+..|.||+..+. +. ++-.|+|. |...|+.+|+.+ +..||+||+...
T Consensus 21 dd~CgICr~~fdg~Cp~Ck~Pgd~Cplv~g~C~H~-FH~hCI~kWl~~~~~~~~CPmCR~~w~ 82 (85)
T PF12861_consen 21 DDVCGICRMPFDGCCPDCKFPGDDCPLVWGKCSHN-FHMHCILKWLSTQSSKGQCPMCRQPWK 82 (85)
T ss_pred CCceeeEecccccCCCCccCCCCCCceeeccCccH-HHHHHHHHHHccccCCCCCCCcCCeee
Confidence 556777765442 32 34479999 999999999874 357999999764
No 43
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.31 E-value=0.00014 Score=72.46 Aligned_cols=50 Identities=22% Similarity=0.681 Sum_probs=45.6
Q ss_pred CCCCcceecccCCcCeEEeCCCCccccHHHHHHHHhCCCCCccccccccce
Q 016892 321 DPGKECVICMTEPKDTAVLPCRHMCMCGECAKELRLQSNKCPICRQPIEEL 371 (381)
Q Consensus 321 ~~~~~CvICl~~~~d~vlLPCgH~cfC~~Ca~~l~~~s~~CPiCR~~I~~~ 371 (381)
.++..|.||+..+.+.++.||+|. -|++|+.+-+.+++.|-.|...+...
T Consensus 420 sEd~lCpICyA~pi~Avf~PC~H~-SC~~CI~qHlmN~k~CFfCktTv~~~ 469 (489)
T KOG4692|consen 420 SEDNLCPICYAGPINAVFAPCSHR-SCYGCITQHLMNCKRCFFCKTTVIDV 469 (489)
T ss_pred cccccCcceecccchhhccCCCCc-hHHHHHHHHHhcCCeeeEecceeeeh
Confidence 467799999999999999999999 99999999888889999999988753
No 44
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.15 E-value=0.00022 Score=72.95 Aligned_cols=50 Identities=34% Similarity=0.739 Sum_probs=45.5
Q ss_pred CCCCcceecccCCcCeEEeCCCCccccHHHHHHHHhCCCCCccccccccce
Q 016892 321 DPGKECVICMTEPKDTAVLPCRHMCMCGECAKELRLQSNKCPICRQPIEEL 371 (381)
Q Consensus 321 ~~~~~CvICl~~~~d~vlLPCgH~cfC~~Ca~~l~~~s~~CPiCR~~I~~~ 371 (381)
..+.+|.||+...-..+.+||||. ||..|+.+.+.+...||+||..+.+.
T Consensus 82 ~sef~c~vc~~~l~~pv~tpcghs-~c~~Cl~r~ld~~~~cp~Cr~~l~e~ 131 (398)
T KOG4159|consen 82 RSEFECCVCSRALYPPVVTPCGHS-FCLECLDRSLDQETECPLCRDELVEL 131 (398)
T ss_pred cchhhhhhhHhhcCCCcccccccc-ccHHHHHHHhccCCCCcccccccccc
Confidence 567899999999999999999999 99999999877888999999988763
No 45
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.14 E-value=0.00039 Score=71.81 Aligned_cols=50 Identities=30% Similarity=0.723 Sum_probs=39.6
Q ss_pred CCCCCcceecccCC-----------------cCeEEeCCCCccccHHHHHHHHh-CCCCCccccccccc
Q 016892 320 SDPGKECVICMTEP-----------------KDTAVLPCRHMCMCGECAKELRL-QSNKCPICRQPIEE 370 (381)
Q Consensus 320 ~~~~~~CvICl~~~-----------------~d~vlLPCgH~cfC~~Ca~~l~~-~s~~CPiCR~~I~~ 370 (381)
.+....|+|||+.. ++-++.||.|. |...|+..|+. .+-.||+||+++..
T Consensus 568 ~~~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~Hi-fH~~CL~~WMd~ykl~CPvCR~pLPp 635 (636)
T KOG0828|consen 568 VRRTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHI-FHRQCLLQWMDTYKLICPVCRCPLPP 635 (636)
T ss_pred hhccccceEeccccceeeccCcchhhhhhhhccccccchHHH-HHHHHHHHHHhhhcccCCccCCCCCC
Confidence 35677999999742 33456799999 99999999997 44589999998753
No 46
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=96.92 E-value=0.00041 Score=51.68 Aligned_cols=46 Identities=39% Similarity=0.904 Sum_probs=39.2
Q ss_pred CCCcceecccCCcCeEEeCCCCccccHHHHHHHHhCCCCCccccccccc
Q 016892 322 PGKECVICMTEPKDTAVLPCRHMCMCGECAKELRLQSNKCPICRQPIEE 370 (381)
Q Consensus 322 ~~~~CvICl~~~~d~vlLPCgH~cfC~~Ca~~l~~~s~~CPiCR~~I~~ 370 (381)
....|+.|......-+++||+|+ .|..|....+ -+.||+|-.+|+.
T Consensus 6 ~~~~~~~~~~~~~~~~~~pCgH~-I~~~~f~~~r--YngCPfC~~~~~~ 51 (55)
T PF14447_consen 6 PEQPCVFCGFVGTKGTVLPCGHL-ICDNCFPGER--YNGCPFCGTPFEF 51 (55)
T ss_pred cceeEEEccccccccccccccce-eeccccChhh--ccCCCCCCCcccC
Confidence 45689999999888999999999 9999988665 4589999988764
No 47
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=96.78 E-value=0.00019 Score=55.13 Aligned_cols=45 Identities=27% Similarity=0.753 Sum_probs=24.6
Q ss_pred CCCcceecccCCcCeEE-eCCCCccccHHHHHHHHhCCCCCcccccccc
Q 016892 322 PGKECVICMTEPKDTAV-LPCRHMCMCGECAKELRLQSNKCPICRQPIE 369 (381)
Q Consensus 322 ~~~~CvICl~~~~d~vl-LPCgH~cfC~~Ca~~l~~~s~~CPiCR~~I~ 369 (381)
+...|.+|.+-.+..+. .-|.|. ||+.|+..-. ...||+|+.+..
T Consensus 6 ~lLrCs~C~~~l~~pv~l~~CeH~-fCs~Ci~~~~--~~~CPvC~~Paw 51 (65)
T PF14835_consen 6 ELLRCSICFDILKEPVCLGGCEHI-FCSSCIRDCI--GSECPVCHTPAW 51 (65)
T ss_dssp HTTS-SSS-S--SS-B---SSS---B-TTTGGGGT--TTB-SSS--B-S
T ss_pred HhcCCcHHHHHhcCCceeccCccH-HHHHHhHHhc--CCCCCCcCChHH
Confidence 45689999999999975 579999 9999997633 356999998763
No 48
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=96.54 E-value=0.002 Score=46.94 Aligned_cols=40 Identities=35% Similarity=0.782 Sum_probs=32.1
Q ss_pred cceeccc--CCcCeEEeCCC-----CccccHHHHHHHHhCC--CCCcccc
Q 016892 325 ECVICMT--EPKDTAVLPCR-----HMCMCGECAKELRLQS--NKCPICR 365 (381)
Q Consensus 325 ~CvICl~--~~~d~vlLPCg-----H~cfC~~Ca~~l~~~s--~~CPiCR 365 (381)
.|.||++ ...+.+++||. |. +...|+.+|...+ .+|++|+
T Consensus 1 ~CrIC~~~~~~~~~l~~PC~C~G~~~~-vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHDEGDEGDPLVSPCRCKGSLKY-VHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCCCCCCCCeeEeccccCCchhH-HHHHHHHHHHHHcCCCcCCCCC
Confidence 4899997 55667788985 77 9999999998654 4799995
No 49
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=96.29 E-value=0.002 Score=59.80 Aligned_cols=51 Identities=22% Similarity=0.487 Sum_probs=43.9
Q ss_pred CCcceecccCCcCeEEeCCCCccccHHHHHHHHhCCCCCccccccccceEEE
Q 016892 323 GKECVICMTEPKDTAVLPCRHMCMCGECAKELRLQSNKCPICRQPIEELIEI 374 (381)
Q Consensus 323 ~~~CvICl~~~~d~vlLPCgH~cfC~~Ca~~l~~~s~~CPiCR~~I~~~i~I 374 (381)
-..|.||-..++..|+.-|||. ||..|+..-.+....|-+|-......+.+
T Consensus 196 PF~C~iCKkdy~spvvt~CGH~-FC~~Cai~~y~kg~~C~~Cgk~t~G~f~V 246 (259)
T COG5152 196 PFLCGICKKDYESPVVTECGHS-FCSLCAIRKYQKGDECGVCGKATYGRFWV 246 (259)
T ss_pred ceeehhchhhccchhhhhcchh-HHHHHHHHHhccCCcceecchhhccceeH
Confidence 4589999999999999999999 99999998777778999998876665443
No 50
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.23 E-value=0.0021 Score=62.83 Aligned_cols=50 Identities=26% Similarity=0.525 Sum_probs=44.0
Q ss_pred CCcceecccCCcCeEEeCCCCccccHHHHHHHHhCCCCCccccccccceEE
Q 016892 323 GKECVICMTEPKDTAVLPCRHMCMCGECAKELRLQSNKCPICRQPIEELIE 373 (381)
Q Consensus 323 ~~~CvICl~~~~d~vlLPCgH~cfC~~Ca~~l~~~s~~CPiCR~~I~~~i~ 373 (381)
...|-||...+.+.|+..|+|. ||..|+..-.+.+..|.||-+.+..++.
T Consensus 241 Pf~c~icr~~f~~pVvt~c~h~-fc~~ca~~~~qk~~~c~vC~~~t~g~~~ 290 (313)
T KOG1813|consen 241 PFKCFICRKYFYRPVVTKCGHY-FCEVCALKPYQKGEKCYVCSQQTHGSFN 290 (313)
T ss_pred CccccccccccccchhhcCCce-eehhhhccccccCCcceecccccccccc
Confidence 4569999999999999999999 9999999877777899999998877653
No 51
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=96.01 E-value=0.0038 Score=68.97 Aligned_cols=69 Identities=23% Similarity=0.482 Sum_probs=45.9
Q ss_pred hcCCchhhhHHHhhCCCCCCCCCCCCCCCCcceecccCCc--Ce-----EEeCCCCccccHHHHHHHHhCC--CCCcccc
Q 016892 295 WVDGVRYELREIYGIGNSAAEGFEDSDPGKECVICMTEPK--DT-----AVLPCRHMCMCGECAKELRLQS--NKCPICR 365 (381)
Q Consensus 295 ~v~g~~~el~ei~g~~~s~~~~~~~~~~~~~CvICl~~~~--d~-----vlLPCgH~cfC~~Ca~~l~~~s--~~CPiCR 365 (381)
..+|...++-+++.+.-+ ...+.-.+|.||++... |. ..--|+|. |+..|+-+|...+ ++||+||
T Consensus 1446 ~~ngs~~D~l~l~kkNi~-----~~fsG~eECaICYsvL~~vdr~lPskrC~TCknK-FH~~CLyKWf~Ss~~s~CPlCR 1519 (1525)
T COG5219 1446 KKNGSFMDLLGLWKKNID-----EKFSGHEECAICYSVLDMVDRSLPSKRCATCKNK-FHTRCLYKWFASSARSNCPLCR 1519 (1525)
T ss_pred hccchHHHHHHHHHhhhh-----hhcCCcchhhHHHHHHHHHhccCCccccchhhhh-hhHHHHHHHHHhcCCCCCCccc
Confidence 445655555555543211 23445679999997532 22 22249999 9999999998754 6799999
Q ss_pred cccc
Q 016892 366 QPIE 369 (381)
Q Consensus 366 ~~I~ 369 (381)
..|.
T Consensus 1520 seit 1523 (1525)
T COG5219 1520 SEIT 1523 (1525)
T ss_pred cccc
Confidence 8875
No 52
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=95.87 E-value=0.0044 Score=63.53 Aligned_cols=54 Identities=33% Similarity=0.705 Sum_probs=46.9
Q ss_pred CCCCCcceecccCCcCeEE-eCCCCccccHHHHHHHHhCCCCCccccccccceEEE
Q 016892 320 SDPGKECVICMTEPKDTAV-LPCRHMCMCGECAKELRLQSNKCPICRQPIEELIEI 374 (381)
Q Consensus 320 ~~~~~~CvICl~~~~d~vl-LPCgH~cfC~~Ca~~l~~~s~~CPiCR~~I~~~i~I 374 (381)
.+.+..|.+|+....+.+. ..|||. ||..|+..|......||.||..+.....+
T Consensus 18 ~~~~l~C~~C~~vl~~p~~~~~cgh~-fC~~C~~~~~~~~~~cp~~~~~~~~~~~~ 72 (391)
T KOG0297|consen 18 LDENLLCPICMSVLRDPVQTTTCGHR-FCAGCLLESLSNHQKCPVCRQELTQAEEL 72 (391)
T ss_pred CcccccCccccccccCCCCCCCCCCc-ccccccchhhccCcCCcccccccchhhcc
Confidence 4677899999999999988 489999 99999999998888999999887765444
No 53
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.77 E-value=0.011 Score=57.47 Aligned_cols=53 Identities=32% Similarity=0.704 Sum_probs=42.4
Q ss_pred CCCCCCcceecccCCcCeEEe-CCCCccccHHHHHHHHhC--CCCCccccccccceE
Q 016892 319 DSDPGKECVICMTEPKDTAVL-PCRHMCMCGECAKELRLQ--SNKCPICRQPIEELI 372 (381)
Q Consensus 319 ~~~~~~~CvICl~~~~d~vlL-PCgH~cfC~~Ca~~l~~~--s~~CPiCR~~I~~~i 372 (381)
....+.+|.+|-+.+....+. +|||. +|..|+..-+.. +-.||.|-..+..+.
T Consensus 235 ~~t~~~~C~~Cg~~PtiP~~~~~C~Hi-yCY~Ci~ts~~~~asf~Cp~Cg~~~~~lq 290 (298)
T KOG2879|consen 235 TGTSDTECPVCGEPPTIPHVIGKCGHI-YCYYCIATSRLWDASFTCPLCGENVEPLQ 290 (298)
T ss_pred cccCCceeeccCCCCCCCeeeccccce-eehhhhhhhhcchhhcccCccCCCCcchh
Confidence 345688999999999888654 69999 999999985433 358999999887554
No 54
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=95.74 E-value=0.0029 Score=68.59 Aligned_cols=52 Identities=21% Similarity=0.457 Sum_probs=41.9
Q ss_pred CCCcceecccCCcCeEEe---CCCCccccHHHHHHHHhCCCCCccccccccceEEE
Q 016892 322 PGKECVICMTEPKDTAVL---PCRHMCMCGECAKELRLQSNKCPICRQPIEELIEI 374 (381)
Q Consensus 322 ~~~~CvICl~~~~d~vlL---PCgH~cfC~~Ca~~l~~~s~~CPiCR~~I~~~i~I 374 (381)
....|.+|+....|-++. +|+|. ||..|+..|......||+||..+..++..
T Consensus 122 ~~~~CP~Ci~s~~DqL~~~~k~c~H~-FC~~Ci~sWsR~aqTCPiDR~EF~~v~V~ 176 (1134)
T KOG0825|consen 122 VENQCPNCLKSCNDQLEESEKHTAHY-FCEECVGSWSRCAQTCPVDRGEFGEVKVL 176 (1134)
T ss_pred hhhhhhHHHHHHHHHhhccccccccc-cHHHHhhhhhhhcccCchhhhhhheeeee
Confidence 345677887776665443 69999 99999999998888999999999887654
No 55
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=95.63 E-value=0.0053 Score=44.66 Aligned_cols=42 Identities=31% Similarity=0.857 Sum_probs=21.5
Q ss_pred ceecccCC--cCeEEeC--CCCccccHHHHHHHHh-CCCCCccccccc
Q 016892 326 CVICMTEP--KDTAVLP--CRHMCMCGECAKELRL-QSNKCPICRQPI 368 (381)
Q Consensus 326 CvICl~~~--~d~vlLP--CgH~cfC~~Ca~~l~~-~s~~CPiCR~~I 368 (381)
|.+|.+.. ++..++| |++. +|..|...++. ...+||-||.+.
T Consensus 1 cp~C~e~~d~~d~~~~PC~Cgf~-IC~~C~~~i~~~~~g~CPgCr~~Y 47 (48)
T PF14570_consen 1 CPLCDEELDETDKDFYPCECGFQ-ICRFCYHDILENEGGRCPGCREPY 47 (48)
T ss_dssp -TTTS-B--CCCTT--SSTTS-----HHHHHHHTTSS-SB-TTT--B-
T ss_pred CCCcccccccCCCccccCcCCCc-HHHHHHHHHHhccCCCCCCCCCCC
Confidence 45666654 4455776 8999 99999999886 468999999864
No 56
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=95.38 E-value=0.01 Score=61.07 Aligned_cols=48 Identities=19% Similarity=0.524 Sum_probs=36.5
Q ss_pred CCCCCCcceecccCCcCe----EEeCCCCccccHHHHHHHHhCCCCCcccccccc
Q 016892 319 DSDPGKECVICMTEPKDT----AVLPCRHMCMCGECAKELRLQSNKCPICRQPIE 369 (381)
Q Consensus 319 ~~~~~~~CvICl~~~~d~----vlLPCgH~cfC~~Ca~~l~~~s~~CPiCR~~I~ 369 (381)
...+--.|.||++..-.- +...|.|. |...|+..|+ ..+||+||-...
T Consensus 171 ~~tELPTCpVCLERMD~s~~gi~t~~c~Hs-fh~~cl~~w~--~~scpvcR~~q~ 222 (493)
T KOG0804|consen 171 GLTELPTCPVCLERMDSSTTGILTILCNHS-FHCSCLMKWW--DSSCPVCRYCQS 222 (493)
T ss_pred CcccCCCcchhHhhcCccccceeeeecccc-cchHHHhhcc--cCcChhhhhhcC
Confidence 345567999999977433 23479999 9999999997 458999996544
No 57
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=95.32 E-value=0.0042 Score=61.63 Aligned_cols=51 Identities=25% Similarity=0.584 Sum_probs=43.8
Q ss_pred CCCCcceecccCCcCeEEe-CCCCccccHHHHHHHHhCCCCCccccccccceE
Q 016892 321 DPGKECVICMTEPKDTAVL-PCRHMCMCGECAKELRLQSNKCPICRQPIEELI 372 (381)
Q Consensus 321 ~~~~~CvICl~~~~d~vlL-PCgH~cfC~~Ca~~l~~~s~~CPiCR~~I~~~i 372 (381)
..-.+|.+|-.-+.|++.+ -|-|. ||..|+-.-...+..||.|...|....
T Consensus 13 n~~itC~LC~GYliDATTI~eCLHT-FCkSCivk~l~~~~~CP~C~i~ih~t~ 64 (331)
T KOG2660|consen 13 NPHITCRLCGGYLIDATTITECLHT-FCKSCIVKYLEESKYCPTCDIVIHKTH 64 (331)
T ss_pred ccceehhhccceeecchhHHHHHHH-HHHHHHHHHHHHhccCCccceeccCcc
Confidence 3467999999999998766 49999 999999997777889999999888764
No 58
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=95.01 E-value=0.029 Score=50.51 Aligned_cols=52 Identities=27% Similarity=0.713 Sum_probs=38.4
Q ss_pred CCcceecccCCcCeEEeCCC-Ccc-----c------cHHHHHHHHhC-------------------------------CC
Q 016892 323 GKECVICMTEPKDTAVLPCR-HMC-----M------CGECAKELRLQ-------------------------------SN 359 (381)
Q Consensus 323 ~~~CvICl~~~~d~vlLPCg-H~c-----f------C~~Ca~~l~~~-------------------------------s~ 359 (381)
+..|.|||+-+.++|+|-|. |-- + .+.|+++.++. .-
T Consensus 2 d~~CpICme~PHNAVLLlCSS~~kgcRpymc~Ts~rhSNCLdqfkka~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 81 (162)
T PF07800_consen 2 DVTCPICMEHPHNAVLLLCSSHEKGCRPYMCDTSYRHSNCLDQFKKAYGKSSSSSSQSSSSAPSDSSSSESSESQEQPEL 81 (162)
T ss_pred CccCceeccCCCceEEEEeccccCCccccccCCccchhHHHHHHHHHhcCCCCccccccccCcCCCcccccccccccccc
Confidence 56899999999999999874 211 2 35787775420 12
Q ss_pred CCccccccccceEEE
Q 016892 360 KCPICRQPIEELIEI 374 (381)
Q Consensus 360 ~CPiCR~~I~~~i~I 374 (381)
.||+||..|.....+
T Consensus 82 ~CPLCRG~V~GWtvv 96 (162)
T PF07800_consen 82 ACPLCRGEVKGWTVV 96 (162)
T ss_pred cCccccCceeceEEc
Confidence 599999999998776
No 59
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.91 E-value=0.0094 Score=57.76 Aligned_cols=49 Identities=20% Similarity=0.605 Sum_probs=38.9
Q ss_pred CCCCcceecccCCc----------CeEEeCCCCccccHHHHHHHHh--CCCCCccccccccc
Q 016892 321 DPGKECVICMTEPK----------DTAVLPCRHMCMCGECAKELRL--QSNKCPICRQPIEE 370 (381)
Q Consensus 321 ~~~~~CvICl~~~~----------d~vlLPCgH~cfC~~Ca~~l~~--~s~~CPiCR~~I~~ 370 (381)
-++..|.||-.... ++--|.|+|. |...|++.|.. +...||.|...|+.
T Consensus 222 l~d~vCaVCg~~~~~s~~eegvienty~LsCnHv-FHEfCIrGWcivGKkqtCPYCKekVdl 282 (328)
T KOG1734|consen 222 LSDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHV-FHEFCIRGWCIVGKKQTCPYCKEKVDL 282 (328)
T ss_pred CCcchhHhhcchheeecchhhhhhhheeeecccc-hHHHhhhhheeecCCCCCchHHHHhhH
Confidence 46779999976543 4456899999 99999999875 44579999988764
No 60
>PF04641 Rtf2: Rtf2 RING-finger
Probab=94.84 E-value=0.033 Score=53.98 Aligned_cols=58 Identities=29% Similarity=0.492 Sum_probs=45.8
Q ss_pred CCCCCcceecccCCc----CeEEeCCCCccccHHHHHHHHhCCCCCccccccccceEEEEcCCC
Q 016892 320 SDPGKECVICMTEPK----DTAVLPCRHMCMCGECAKELRLQSNKCPICRQPIEELIEIKINSG 379 (381)
Q Consensus 320 ~~~~~~CvICl~~~~----d~vlLPCgH~cfC~~Ca~~l~~~s~~CPiCR~~I~~~i~I~i~~~ 379 (381)
......|.|+...+. -+.+.+|||+ |+..+++.+. ....||+|-.++...-.|.|+..
T Consensus 110 ~~~~~~CPvt~~~~~~~~~fv~l~~cG~V-~s~~alke~k-~~~~Cp~c~~~f~~~DiI~Lnp~ 171 (260)
T PF04641_consen 110 SEGRFICPVTGKEFNGKHKFVYLRPCGCV-FSEKALKELK-KSKKCPVCGKPFTEEDIIPLNPP 171 (260)
T ss_pred CCceeECCCCCcccCCceeEEEEcCCCCE-eeHHHHHhhc-ccccccccCCccccCCEEEecCC
Confidence 456678999987763 3455699999 9999999985 45689999999998877777654
No 61
>KOG4367 consensus Predicted Zn-finger protein [Function unknown]
Probab=94.84 E-value=0.016 Score=59.46 Aligned_cols=37 Identities=27% Similarity=0.790 Sum_probs=32.7
Q ss_pred CCCCcceecccCCcCeEEeCCCCccccHHHHHHHHhCC
Q 016892 321 DPGKECVICMTEPKDTAVLPCRHMCMCGECAKELRLQS 358 (381)
Q Consensus 321 ~~~~~CvICl~~~~d~vlLPCgH~cfC~~Ca~~l~~~s 358 (381)
+++..|.||-+-+++.++|+|+|. +|..|+.....++
T Consensus 2 eeelkc~vc~~f~~epiil~c~h~-lc~~ca~~~~~~t 38 (699)
T KOG4367|consen 2 EEELKCPVCGSFYREPIILPCSHN-LCQACARNILVQT 38 (699)
T ss_pred cccccCceehhhccCceEeecccH-HHHHHHHhhcccC
Confidence 467899999999999999999999 9999999865443
No 62
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.84 E-value=0.023 Score=57.99 Aligned_cols=32 Identities=34% Similarity=0.844 Sum_probs=27.1
Q ss_pred CCCcceecccCC---cCeEEeCCCCccccHHHHHHH
Q 016892 322 PGKECVICMTEP---KDTAVLPCRHMCMCGECAKEL 354 (381)
Q Consensus 322 ~~~~CvICl~~~---~d~vlLPCgH~cfC~~Ca~~l 354 (381)
....|.||++.. ....+|||+|+ ||..|++..
T Consensus 183 slf~C~ICf~e~~G~~c~~~lpC~Hv-~Ck~C~kdY 217 (445)
T KOG1814|consen 183 SLFDCCICFEEQMGQHCFKFLPCSHV-FCKSCLKDY 217 (445)
T ss_pred hcccceeeehhhcCcceeeecccchH-HHHHHHHHH
Confidence 467999999987 44678999999 999999873
No 63
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.43 E-value=0.029 Score=56.85 Aligned_cols=51 Identities=24% Similarity=0.547 Sum_probs=35.3
Q ss_pred CCcceecccCC---cCeE-EeCCCCccccHHHHHHHHhCC---CCCccccccccceEEE
Q 016892 323 GKECVICMTEP---KDTA-VLPCRHMCMCGECAKELRLQS---NKCPICRQPIEELIEI 374 (381)
Q Consensus 323 ~~~CvICl~~~---~d~v-lLPCgH~cfC~~Ca~~l~~~s---~~CPiCR~~I~~~i~I 374 (381)
..+|.||-+-. ++.. +--|||. |...|+..|.... ..|||||-.+.....+
T Consensus 4 ~A~C~Ic~d~~p~~~~l~~i~~cGhi-fh~~cl~qwfe~~Ps~R~cpic~ik~~~r~~~ 61 (465)
T KOG0827|consen 4 MAECHICIDGRPNDHELGPIGTCGHI-FHTTCLTQWFEGDPSNRGCPICQIKLQERHVA 61 (465)
T ss_pred cceeeEeccCCccccccccccchhhH-HHHHHHHHHHccCCccCCCCceeecccceeee
Confidence 45899994433 2222 2249999 9999999998742 5799999656555443
No 64
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.25 E-value=0.044 Score=52.62 Aligned_cols=54 Identities=19% Similarity=0.342 Sum_probs=43.3
Q ss_pred CCCcceecccCCcCe----EEeCCCCccccHHHHHHHHhCCCCCccccccccceEEEEc
Q 016892 322 PGKECVICMTEPKDT----AVLPCRHMCMCGECAKELRLQSNKCPICRQPIEELIEIKI 376 (381)
Q Consensus 322 ~~~~CvICl~~~~d~----vlLPCgH~cfC~~Ca~~l~~~s~~CPiCR~~I~~~i~I~i 376 (381)
....|.||.+...++ ++-+|||+ +|.+|+..+......||+|-.++...-.|-+
T Consensus 220 ~ryiCpvtrd~LtNt~~ca~Lr~sg~V-v~~ecvEklir~D~v~pv~d~plkdrdiI~L 277 (303)
T KOG3039|consen 220 KRYICPVTRDTLTNTTPCAVLRPSGHV-VTKECVEKLIRKDMVDPVTDKPLKDRDIIGL 277 (303)
T ss_pred cceecccchhhhcCccceEEeccCCcE-eeHHHHHHhccccccccCCCCcCcccceEee
Confidence 567899998876554 34489999 9999999998888899999998887655543
No 65
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=94.11 E-value=0.047 Score=43.81 Aligned_cols=29 Identities=24% Similarity=0.455 Sum_probs=26.6
Q ss_pred CCCCccccHHHHHHHHhCCCCCcccccccc
Q 016892 340 PCRHMCMCGECAKELRLQSNKCPICRQPIE 369 (381)
Q Consensus 340 PCgH~cfC~~Ca~~l~~~s~~CPiCR~~I~ 369 (381)
-|.|. |...|+.+|+...+.||+||+...
T Consensus 53 ~CnHa-FH~HCI~rWL~Tk~~CPld~q~w~ 81 (88)
T COG5194 53 VCNHA-FHDHCIYRWLDTKGVCPLDRQTWV 81 (88)
T ss_pred ecchH-HHHHHHHHHHhhCCCCCCCCceeE
Confidence 69999 999999999999899999998754
No 66
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=93.98 E-value=0.0099 Score=46.42 Aligned_cols=47 Identities=34% Similarity=0.598 Sum_probs=22.4
Q ss_pred CCcceecccCCc-Ce----EEe---CCCCccccHHHHHHHHhC---C--------CCCccccccccc
Q 016892 323 GKECVICMTEPK-DT----AVL---PCRHMCMCGECAKELRLQ---S--------NKCPICRQPIEE 370 (381)
Q Consensus 323 ~~~CvICl~~~~-d~----vlL---PCgH~cfC~~Ca~~l~~~---s--------~~CPiCR~~I~~ 370 (381)
+.+|.||++... +. ++- .|++. |...|+.+|... + ..||.|++.|.-
T Consensus 2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~-fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~~ 67 (70)
T PF11793_consen 2 ELECGICYSYRLDDGEIPDVVCPNPSCGKK-FHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPISW 67 (70)
T ss_dssp --S-SSS--SS-TT-----B--S-TT-----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEEG
T ss_pred CCCCCcCCcEecCCCCcCceEcCCcccCCH-HHHHHHHHHHHHcccCCeeecccccCCcCCCCeeeE
Confidence 468999998654 21 121 47888 999999998642 1 359999998753
No 67
>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=93.79 E-value=0.022 Score=54.41 Aligned_cols=44 Identities=32% Similarity=0.890 Sum_probs=30.7
Q ss_pred cceecccCC-cCeEE-eCCCCccccHHHHHHHHhCCCCCccccccccce
Q 016892 325 ECVICMTEP-KDTAV-LPCRHMCMCGECAKELRLQSNKCPICRQPIEEL 371 (381)
Q Consensus 325 ~CvICl~~~-~d~vl-LPCgH~cfC~~Ca~~l~~~s~~CPiCR~~I~~~ 371 (381)
-|..|.... .+..+ +.|+|+ ||..|...-. ...|++||..|..+
T Consensus 5 hCn~C~~~~~~~~f~LTaC~Hv-fC~~C~k~~~--~~~C~lCkk~ir~i 50 (233)
T KOG4739|consen 5 HCNKCFRFPSQDPFFLTACRHV-FCEPCLKASS--PDVCPLCKKSIRII 50 (233)
T ss_pred EeccccccCCCCceeeeechhh-hhhhhcccCC--ccccccccceeeee
Confidence 466666544 44444 479999 9999987543 23899999986643
No 68
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=93.48 E-value=0.03 Score=58.76 Aligned_cols=51 Identities=25% Similarity=0.647 Sum_probs=40.9
Q ss_pred CCCCCCCcceecccCCcCeEEeCCCCccccHHHHHHHHh-----CCCCCcccccccc
Q 016892 318 EDSDPGKECVICMTEPKDTAVLPCRHMCMCGECAKELRL-----QSNKCPICRQPIE 369 (381)
Q Consensus 318 ~~~~~~~~CvICl~~~~d~vlLPCgH~cfC~~Ca~~l~~-----~s~~CPiCR~~I~ 369 (381)
++..+..+|.+|-+...|.+...|.|. ||..|+..... .+-.||.|-..+.
T Consensus 531 ~enk~~~~C~lc~d~aed~i~s~ChH~-FCrlCi~eyv~~f~~~~nvtCP~C~i~Ls 586 (791)
T KOG1002|consen 531 DENKGEVECGLCHDPAEDYIESSCHHK-FCRLCIKEYVESFMENNNVTCPVCHIGLS 586 (791)
T ss_pred ccccCceeecccCChhhhhHhhhhhHH-HHHHHHHHHHHhhhcccCCCCcccccccc
Confidence 445677899999999999999999999 99999977432 2357999965443
No 69
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=93.36 E-value=0.047 Score=62.90 Aligned_cols=51 Identities=29% Similarity=0.742 Sum_probs=40.2
Q ss_pred CCCCCcceecccCC---cCeEEeCCCCccccHHHHHHHHhCC----------CCCccccccccce
Q 016892 320 SDPGKECVICMTEP---KDTAVLPCRHMCMCGECAKELRLQS----------NKCPICRQPIEEL 371 (381)
Q Consensus 320 ~~~~~~CvICl~~~---~d~vlLPCgH~cfC~~Ca~~l~~~s----------~~CPiCR~~I~~~ 371 (381)
.+.++.|.||+.+. .-++-|-|+|+ |...|.+.++.+. -.||||...|...
T Consensus 3483 QD~DDmCmICFTE~L~AAP~IqL~C~Hi-FHlqC~R~vLE~RW~GPRItF~FisCPiC~n~InH~ 3546 (3738)
T KOG1428|consen 3483 QDADDMCMICFTEALSAAPAIQLDCSHI-FHLQCCRRVLENRWLGPRITFGFISCPICKNKINHI 3546 (3738)
T ss_pred cccCceEEEEehhhhCCCcceecCCccc-hhHHHHHHHHHhcccCCeeEEeeeecccccchhhhH
Confidence 45678999999876 34567899999 9999998865421 4799999988764
No 70
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=93.32 E-value=0.048 Score=54.51 Aligned_cols=47 Identities=26% Similarity=0.800 Sum_probs=36.1
Q ss_pred CCcceecccCC--cCeEEe--CCCCccccHHHHHHHHhC-CCCCccccccccc
Q 016892 323 GKECVICMTEP--KDTAVL--PCRHMCMCGECAKELRLQ-SNKCPICRQPIEE 370 (381)
Q Consensus 323 ~~~CvICl~~~--~d~vlL--PCgH~cfC~~Ca~~l~~~-s~~CPiCR~~I~~ 370 (381)
++.|..|++.. .|--|. +||-. .|..|+..+++. +.+||-||...+.
T Consensus 14 ed~cplcie~mditdknf~pc~cgy~-ic~fc~~~irq~lngrcpacrr~y~d 65 (480)
T COG5175 14 EDYCPLCIEPMDITDKNFFPCPCGYQ-ICQFCYNNIRQNLNGRCPACRRKYDD 65 (480)
T ss_pred cccCcccccccccccCCcccCCcccH-HHHHHHHHHHhhccCCChHhhhhccc
Confidence 34599999876 344455 58888 999999998764 4689999987764
No 71
>KOG2113 consensus Predicted RNA binding protein, contains KH domain [General function prediction only]
Probab=93.16 E-value=0.11 Score=51.51 Aligned_cols=55 Identities=13% Similarity=-0.051 Sum_probs=46.2
Q ss_pred CCCCCCCcceecccCCcCeEEeCCCCccccHHHHHHHHhCCCCCccccccccceEEE
Q 016892 318 EDSDPGKECVICMTEPKDTAVLPCRHMCMCGECAKELRLQSNKCPICRQPIEELIEI 374 (381)
Q Consensus 318 ~~~~~~~~CvICl~~~~d~vlLPCgH~cfC~~Ca~~l~~~s~~CPiCR~~I~~~i~I 374 (381)
+..-..++|.+|-.....+++.+|+|+-||.+|+. ..-+..|+.|...+..++.|
T Consensus 338 ~~~~s~~~~~~~~~~~~st~~~~~~~n~~~~~~a~--~s~~~~~~~c~~~~~~~~~i 392 (394)
T KOG2113|consen 338 NGLMSSLKGTSAGFGLLSTIWSGGNMNLSPGSLAS--ASASPTSSTCDHNDHTLVPI 392 (394)
T ss_pred ccchhhcccccccCceeeeEeecCCcccChhhhhh--cccCCccccccccceeeeec
Confidence 33456789999999999999999999999999998 33457899999888887776
No 72
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=93.06 E-value=0.036 Score=60.62 Aligned_cols=45 Identities=36% Similarity=0.738 Sum_probs=37.6
Q ss_pred CcceecccCCcCeEEeCCCCccccHHHHHHHHhCC--CCCccccccccc
Q 016892 324 KECVICMTEPKDTAVLPCRHMCMCGECAKELRLQS--NKCPICRQPIEE 370 (381)
Q Consensus 324 ~~CvICl~~~~d~vlLPCgH~cfC~~Ca~~l~~~s--~~CPiCR~~I~~ 370 (381)
..|.||++ ..++++..|+|. +|.+|........ ..|++||..+..
T Consensus 455 ~~c~ic~~-~~~~~it~c~h~-~c~~c~~~~i~~~~~~~~~~cr~~l~~ 501 (674)
T KOG1001|consen 455 HWCHICCD-LDSFFITRCGHD-FCVECLKKSIQQSENAPCPLCRNVLKE 501 (674)
T ss_pred cccccccc-cccceeecccch-HHHHHHHhccccccCCCCcHHHHHHHH
Confidence 79999999 777888899999 9999999854432 359999998765
No 73
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.68 E-value=0.078 Score=51.85 Aligned_cols=44 Identities=39% Similarity=0.802 Sum_probs=35.1
Q ss_pred CcceecccCCc------CeEEeCCCCccccHHHHHHHHhCC-CCCccccccc
Q 016892 324 KECVICMTEPK------DTAVLPCRHMCMCGECAKELRLQS-NKCPICRQPI 368 (381)
Q Consensus 324 ~~CvICl~~~~------d~vlLPCgH~cfC~~Ca~~l~~~s-~~CPiCR~~I 368 (381)
.+|.||-+.+. .+.+|-|||. +|..|+..+...+ ..||.||...
T Consensus 4 ~~c~~c~~~~s~~~~~~~p~~l~c~h~-~c~~c~~~l~~~~~i~cpfcR~~~ 54 (296)
T KOG4185|consen 4 PECEICNEDYSSEDGDHIPRVLKCGHT-ICQNCASKLLGNSRILCPFCRETT 54 (296)
T ss_pred CceeecCccccccCcccCCcccccCce-ehHhHHHHHhcCceeeccCCCCcc
Confidence 57889987663 3466779999 9999999987655 4699999985
No 74
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=92.64 E-value=0.066 Score=46.93 Aligned_cols=49 Identities=27% Similarity=0.659 Sum_probs=41.2
Q ss_pred CCCcceecccCCcCeEEe-C---CCCccccHHHHHHHHhCC---CCCccccccccce
Q 016892 322 PGKECVICMTEPKDTAVL-P---CRHMCMCGECAKELRLQS---NKCPICRQPIEEL 371 (381)
Q Consensus 322 ~~~~CvICl~~~~d~vlL-P---CgH~cfC~~Ca~~l~~~s---~~CPiCR~~I~~~ 371 (381)
.--+|-||.+...+-.+| | ||-. +|..|...||+-. ..||+|+..+.+.
T Consensus 79 ~lYeCnIC~etS~ee~FLKPneCCgY~-iCn~Cya~LWK~~~~ypvCPvCkTSFKss 134 (140)
T PF05290_consen 79 KLYECNICKETSAEERFLKPNECCGYS-ICNACYANLWKFCNLYPVCPVCKTSFKSS 134 (140)
T ss_pred CceeccCcccccchhhcCCcccccchH-HHHHHHHHHHHHcccCCCCCccccccccc
Confidence 567999999999999998 4 8988 9999999977644 4799999988764
No 75
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.59 E-value=0.083 Score=53.99 Aligned_cols=46 Identities=26% Similarity=0.690 Sum_probs=36.4
Q ss_pred CCCCcceecccCC-----cCeEEeCCCCccccHHHHHHHHhCC--CCCcccccc
Q 016892 321 DPGKECVICMTEP-----KDTAVLPCRHMCMCGECAKELRLQS--NKCPICRQP 367 (381)
Q Consensus 321 ~~~~~CvICl~~~-----~d~vlLPCgH~cfC~~Ca~~l~~~s--~~CPiCR~~ 367 (381)
+.+..|.||++.. ...+.+-|||. |=..|++.|.-++ ..||.|...
T Consensus 2 d~g~tcpiclds~~~~g~hr~vsl~cghl-Fgs~cie~wl~k~~~~~cp~c~~k 54 (463)
T KOG1645|consen 2 DCGTTCPICLDSYTTAGNHRIVSLQCGHL-FGSQCIEKWLGKKTKMQCPLCSGK 54 (463)
T ss_pred CccccCceeeeeeeecCceEEeeeccccc-ccHHHHHHHHhhhhhhhCcccCCh
Confidence 3567999999875 34466789999 9999999998643 469999654
No 76
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=92.51 E-value=0.053 Score=47.62 Aligned_cols=35 Identities=26% Similarity=0.586 Sum_probs=27.9
Q ss_pred CCCcceecccCCcC---eEEeCCC------CccccHHHHHHHHhC
Q 016892 322 PGKECVICMTEPKD---TAVLPCR------HMCMCGECAKELRLQ 357 (381)
Q Consensus 322 ~~~~CvICl~~~~d---~vlLPCg------H~cfC~~Ca~~l~~~ 357 (381)
...+|.||++...+ +|.+.|+ |+ ||.+|.++|...
T Consensus 25 ~~~EC~IC~~~I~~~~GvV~vt~~g~lnLEkm-fc~~C~~rw~~~ 68 (134)
T PF05883_consen 25 CTVECQICFDRIDNNDGVVYVTDGGTLNLEKM-FCADCDKRWRRE 68 (134)
T ss_pred cCeeehhhhhhhhcCCCEEEEecCCeehHHHH-HHHHHHHHHHhh
Confidence 36799999998765 4567887 77 999999999543
No 77
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=92.07 E-value=0.28 Score=48.51 Aligned_cols=48 Identities=33% Similarity=0.754 Sum_probs=34.2
Q ss_pred CCCCcceecccCCcC---eEEeCCCCccccHHHHHHH------------------HhC-----CCCCcccccccc
Q 016892 321 DPGKECVICMTEPKD---TAVLPCRHMCMCGECAKEL------------------RLQ-----SNKCPICRQPIE 369 (381)
Q Consensus 321 ~~~~~CvICl~~~~d---~vlLPCgH~cfC~~Ca~~l------------------~~~-----s~~CPiCR~~I~ 369 (381)
-....|+||+--+.+ .+...|-|. |.+.|+.+. ++. ...||+||..|.
T Consensus 113 ~p~gqCvICLygfa~~~~ft~T~C~Hy-~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~ 186 (368)
T KOG4445|consen 113 HPNGQCVICLYGFASSPAFTVTACDHY-MHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIK 186 (368)
T ss_pred CCCCceEEEEEeecCCCceeeehhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhcc
Confidence 345689999877654 356799999 999997652 111 146999999875
No 78
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=91.84 E-value=0.19 Score=45.35 Aligned_cols=50 Identities=30% Similarity=0.429 Sum_probs=37.1
Q ss_pred CCCCCcceecccCCcCeEEeCCCCcc----ccHHHHHHHHhCC--CCCccccccccc
Q 016892 320 SDPGKECVICMTEPKDTAVLPCRHMC----MCGECAKELRLQS--NKCPICRQPIEE 370 (381)
Q Consensus 320 ~~~~~~CvICl~~~~d~vlLPCgH~c----fC~~Ca~~l~~~s--~~CPiCR~~I~~ 370 (381)
...+..|-||++...+ ...||.-.. ...+|+++|...+ ..|.+|+....-
T Consensus 5 s~~~~~CRIC~~~~~~-~~~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~i 60 (162)
T PHA02825 5 SLMDKCCWICKDEYDV-VTNYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPYNI 60 (162)
T ss_pred CCCCCeeEecCCCCCC-ccCCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeEEE
Confidence 4567899999988754 345766532 4789999998755 469999987753
No 79
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=91.50 E-value=0.12 Score=51.43 Aligned_cols=46 Identities=30% Similarity=0.817 Sum_probs=37.8
Q ss_pred CCCCcceecccCCcCeEEeCC--CCccccHHHHHHHHhCCCCCccccccccce
Q 016892 321 DPGKECVICMTEPKDTAVLPC--RHMCMCGECAKELRLQSNKCPICRQPIEEL 371 (381)
Q Consensus 321 ~~~~~CvICl~~~~d~vlLPC--gH~cfC~~Ca~~l~~~s~~CPiCR~~I~~~ 371 (381)
.+-.+|.||++...-.++ .| ||+ .|..|...+. ++||.||.+|..+
T Consensus 46 ~~lleCPvC~~~l~~Pi~-QC~nGHl-aCssC~~~~~---~~CP~Cr~~~g~~ 93 (299)
T KOG3002|consen 46 LDLLDCPVCFNPLSPPIF-QCDNGHL-ACSSCRTKVS---NKCPTCRLPIGNI 93 (299)
T ss_pred hhhccCchhhccCcccce-ecCCCcE-ehhhhhhhhc---ccCCccccccccH
Confidence 456799999998888765 56 799 9999987654 6899999998843
No 80
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=90.66 E-value=0.14 Score=37.14 Aligned_cols=45 Identities=31% Similarity=0.837 Sum_probs=26.4
Q ss_pred cceecccCCcCeEEeCCC-CccccHHHHHHHHhCCCCCccccccccceE
Q 016892 325 ECVICMTEPKDTAVLPCR-HMCMCGECAKELRLQSNKCPICRQPIEELI 372 (381)
Q Consensus 325 ~CvICl~~~~d~vlLPCg-H~cfC~~Ca~~l~~~s~~CPiCR~~I~~~i 372 (381)
.|.-|.-+.+. ++-|. |. +|..|+..|+..+..|+||..++-..+
T Consensus 4 nCKsCWf~~k~--Li~C~dHY-LCl~CLt~ml~~s~~C~iC~~~LPtki 49 (50)
T PF03854_consen 4 NCKSCWFANKG--LIKCSDHY-LCLNCLTLMLSRSDRCPICGKPLPTKI 49 (50)
T ss_dssp ---SS-S--SS--EEE-SS-E-EEHHHHHHT-SSSSEETTTTEE----S
T ss_pred cChhhhhcCCC--eeeecchh-HHHHHHHHHhccccCCCcccCcCcccc
Confidence 46667655544 45687 55 999999999999999999988776544
No 81
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=90.41 E-value=0.13 Score=50.74 Aligned_cols=43 Identities=30% Similarity=0.761 Sum_probs=35.9
Q ss_pred CCcceecccCCcCeEEeC-CCCccccHHHHHHHHh-CCCCCccccc
Q 016892 323 GKECVICMTEPKDTAVLP-CRHMCMCGECAKELRL-QSNKCPICRQ 366 (381)
Q Consensus 323 ~~~CvICl~~~~d~vlLP-CgH~cfC~~Ca~~l~~-~s~~CPiCR~ 366 (381)
.+.|..|-...++.+-.+ |+|. ||.+|+...+. ....||.|..
T Consensus 274 ~LkCplc~~Llrnp~kT~cC~~~-fc~eci~~al~dsDf~CpnC~r 318 (427)
T COG5222 274 SLKCPLCHCLLRNPMKTPCCGHT-FCDECIGTALLDSDFKCPNCSR 318 (427)
T ss_pred cccCcchhhhhhCcccCccccch-HHHHHHhhhhhhccccCCCccc
Confidence 479999999999988886 8999 99999998444 4468999965
No 82
>PHA03096 p28-like protein; Provisional
Probab=90.33 E-value=0.16 Score=50.18 Aligned_cols=42 Identities=24% Similarity=0.266 Sum_probs=30.4
Q ss_pred CcceecccCC--------cCeEEeCCCCccccHHHHHHHHhCC---CCCccccc
Q 016892 324 KECVICMTEP--------KDTAVLPCRHMCMCGECAKELRLQS---NKCPICRQ 366 (381)
Q Consensus 324 ~~CvICl~~~--------~d~vlLPCgH~cfC~~Ca~~l~~~s---~~CPiCR~ 366 (381)
..|.|||+.. +..++--|.|. ||..|+..|+... ..|+.||.
T Consensus 179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~-fc~~ci~~wr~~~~~~e~~~~c~~ 231 (284)
T PHA03096 179 KICGICLENIKAKYIIKKYYGILSEIKHE-FNIFCIKIWMTESLYKETEPENRR 231 (284)
T ss_pred hhcccchhhhhhhccccccccccccCCcH-HHHHHHHHHHHhhhhcccCccccc
Confidence 7899999854 33345569999 9999999998643 34555544
No 83
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=89.90 E-value=0.14 Score=50.83 Aligned_cols=48 Identities=25% Similarity=0.657 Sum_probs=33.1
Q ss_pred CCcceecccCC-cCeEEeCCCCccccHHHHHHHHhCCCCCccccccccceEE
Q 016892 323 GKECVICMTEP-KDTAVLPCRHMCMCGECAKELRLQSNKCPICRQPIEELIE 373 (381)
Q Consensus 323 ~~~CvICl~~~-~d~vlLPCgH~cfC~~Ca~~l~~~s~~CPiCR~~I~~~i~ 373 (381)
...|.-|---. .-..++||.|+ ||.+|+..- ..+.||.|-..|.++-+
T Consensus 90 VHfCd~Cd~PI~IYGRmIPCkHv-FCl~CAr~~--~dK~Cp~C~d~VqrIeq 138 (389)
T KOG2932|consen 90 VHFCDRCDFPIAIYGRMIPCKHV-FCLECARSD--SDKICPLCDDRVQRIEQ 138 (389)
T ss_pred eEeecccCCcceeeecccccchh-hhhhhhhcC--ccccCcCcccHHHHHHH
Confidence 44677775433 22356799999 999999752 24579999888776543
No 84
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=89.78 E-value=0.098 Score=41.67 Aligned_cols=29 Identities=28% Similarity=0.683 Sum_probs=23.9
Q ss_pred CCCCccccHHHHHHHHhCC---CCCcccccccc
Q 016892 340 PCRHMCMCGECAKELRLQS---NKCPICRQPIE 369 (381)
Q Consensus 340 PCgH~cfC~~Ca~~l~~~s---~~CPiCR~~I~ 369 (381)
-|.|+ |...|+.+|.... ..||+||+...
T Consensus 50 ~C~h~-fh~hCI~~wl~~~tsq~~CPmcRq~~~ 81 (84)
T KOG1493|consen 50 YCLHA-FHAHCILKWLNTPTSQGQCPMCRQTWQ 81 (84)
T ss_pred HHHHH-HHHHHHHHHhcCccccccCCcchheeE
Confidence 59999 9999999987632 46999999753
No 85
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=88.84 E-value=0.29 Score=36.74 Aligned_cols=42 Identities=21% Similarity=0.414 Sum_probs=29.1
Q ss_pred CCCCcceecccCCcCeEEe-CCCCccccHHHHHHHHhC--CCCCcc
Q 016892 321 DPGKECVICMTEPKDTAVL-PCRHMCMCGECAKELRLQ--SNKCPI 363 (381)
Q Consensus 321 ~~~~~CvICl~~~~d~vlL-PCgH~cfC~~Ca~~l~~~--s~~CPi 363 (381)
.....|.|.+..+++.+.- -|+|. |..+.+..+..+ ..+||+
T Consensus 9 ~~~~~CPiT~~~~~~PV~s~~C~H~-fek~aI~~~i~~~~~~~CPv 53 (57)
T PF11789_consen 9 TISLKCPITLQPFEDPVKSKKCGHT-FEKEAILQYIQRNGSKRCPV 53 (57)
T ss_dssp B--SB-TTTSSB-SSEEEESSS--E-EEHHHHHHHCTTTS-EE-SC
T ss_pred EeccCCCCcCChhhCCcCcCCCCCe-ecHHHHHHHHHhcCCCCCCC
Confidence 4567999999999999885 79999 999999998733 356998
No 86
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=88.70 E-value=0.27 Score=41.32 Aligned_cols=27 Identities=22% Similarity=0.481 Sum_probs=24.9
Q ss_pred CCCCccccHHHHHHHHhCCCCCcccccc
Q 016892 340 PCRHMCMCGECAKELRLQSNKCPICRQP 367 (381)
Q Consensus 340 PCgH~cfC~~Ca~~l~~~s~~CPiCR~~ 367 (381)
-|.|. |..-|+.+|+++.+.||+|.+.
T Consensus 80 ~CNHa-FH~hCisrWlktr~vCPLdn~e 106 (114)
T KOG2930|consen 80 VCNHA-FHFHCISRWLKTRNVCPLDNKE 106 (114)
T ss_pred ecchH-HHHHHHHHHHhhcCcCCCcCcc
Confidence 69999 9999999999999999999764
No 87
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=88.34 E-value=0.33 Score=48.50 Aligned_cols=46 Identities=17% Similarity=0.504 Sum_probs=37.2
Q ss_pred CCCCCcceecccCCcCeEEeC-CCCccccHHHHHHHHhCCCCCccccc
Q 016892 320 SDPGKECVICMTEPKDTAVLP-CRHMCMCGECAKELRLQSNKCPICRQ 366 (381)
Q Consensus 320 ~~~~~~CvICl~~~~d~vlLP-CgH~cfC~~Ca~~l~~~s~~CPiCR~ 366 (381)
..+...|.||+....+..++- -|-+ ||..|+-.-....+.||+--.
T Consensus 297 ~~~~~~CpvClk~r~Nptvl~vSGyV-fCY~Ci~~Yv~~~~~CPVT~~ 343 (357)
T KOG0826|consen 297 PPDREVCPVCLKKRQNPTVLEVSGYV-FCYPCIFSYVVNYGHCPVTGY 343 (357)
T ss_pred CCccccChhHHhccCCCceEEecceE-EeHHHHHHHHHhcCCCCccCC
Confidence 356779999999988887776 4777 999999997778889997443
No 88
>KOG3799 consensus Rab3 effector RIM1 and related proteins, contain Rab3a binding domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.94 E-value=0.25 Score=43.49 Aligned_cols=45 Identities=36% Similarity=0.864 Sum_probs=28.6
Q ss_pred CCCCcceeccc-CCcCeEEeCCCCcc------ccHHHHHHHHhCCC----CCcccccccc
Q 016892 321 DPGKECVICMT-EPKDTAVLPCRHMC------MCGECAKELRLQSN----KCPICRQPIE 369 (381)
Q Consensus 321 ~~~~~CvICl~-~~~d~vlLPCgH~c------fC~~Ca~~l~~~s~----~CPiCR~~I~ 369 (381)
.++..|.||+. .+.| -|||.| ||..|--+...+++ .|-+||....
T Consensus 63 ~ddatC~IC~KTKFAD----G~GH~C~YCq~r~CARCGGrv~lrsNKv~wvcnlc~k~q~ 118 (169)
T KOG3799|consen 63 GDDATCGICHKTKFAD----GCGHNCSYCQTRFCARCGGRVSLRSNKVMWVCNLCRKQQE 118 (169)
T ss_pred CcCcchhhhhhccccc----ccCcccchhhhhHHHhcCCeeeeccCceEEeccCCcHHHH
Confidence 45779999984 3344 389986 46666555444433 3778876544
No 89
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=87.01 E-value=0.76 Score=46.79 Aligned_cols=50 Identities=28% Similarity=0.608 Sum_probs=33.5
Q ss_pred CCCCcceecccCCcCeEEe-CC---------------------CCccccHHHHHHHHh-------------CCCCCcccc
Q 016892 321 DPGKECVICMTEPKDTAVL-PC---------------------RHMCMCGECAKELRL-------------QSNKCPICR 365 (381)
Q Consensus 321 ~~~~~CvICl~~~~d~vlL-PC---------------------gH~cfC~~Ca~~l~~-------------~s~~CPiCR 365 (381)
++...|.-||.+..++.+. -| +=| -|.+|..+|.- ++..||.||
T Consensus 269 ~e~e~CigC~~~~~~vkl~k~C~~~~~~g~~~~~~~~C~~C~CRPm-WC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCR 347 (358)
T PF10272_consen 269 QELEPCIGCMQAQPNVKLVKRCADEEQEGSPLPNEPPCQQCYCRPM-WCLECMGKWFASRQDQQHPETWLSGKCPCPTCR 347 (358)
T ss_pred cccCCccccccCCCCcEEEeccCCcccCCcccccCCCCccccccch-HHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCc
Confidence 3455777888877776655 24 223 48999988732 235799999
Q ss_pred ccccce
Q 016892 366 QPIEEL 371 (381)
Q Consensus 366 ~~I~~~ 371 (381)
+.+.-+
T Consensus 348 a~FCil 353 (358)
T PF10272_consen 348 AKFCIL 353 (358)
T ss_pred ccceee
Confidence 987543
No 90
>PHA02862 5L protein; Provisional
Probab=86.82 E-value=0.63 Score=41.51 Aligned_cols=46 Identities=17% Similarity=0.317 Sum_probs=34.6
Q ss_pred CCcceecccCCcCeEEeCCCCcc----ccHHHHHHHHhCC--CCCcccccccc
Q 016892 323 GKECVICMTEPKDTAVLPCRHMC----MCGECAKELRLQS--NKCPICRQPIE 369 (381)
Q Consensus 323 ~~~CvICl~~~~d~vlLPCgH~c----fC~~Ca~~l~~~s--~~CPiCR~~I~ 369 (381)
+..|-||++...+. +-||+-.. .+.+|+.+|...+ ..|++|+.+..
T Consensus 2 ~diCWIC~~~~~e~-~~PC~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~ 53 (156)
T PHA02862 2 SDICWICNDVCDER-NNFCGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKYN 53 (156)
T ss_pred CCEEEEecCcCCCC-cccccccCcchhHHHHHHHHHHhcCCCcCccCCCCeEE
Confidence 46899999987554 46776422 5789999998644 56999998775
No 91
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=86.75 E-value=0.26 Score=47.31 Aligned_cols=44 Identities=30% Similarity=0.875 Sum_probs=33.6
Q ss_pred CCCcceecccCC---cCeEEe--C-CCCccccHHHHHHHHhCC-CCCc--cccc
Q 016892 322 PGKECVICMTEP---KDTAVL--P-CRHMCMCGECAKELRLQS-NKCP--ICRQ 366 (381)
Q Consensus 322 ~~~~CvICl~~~---~d~vlL--P-CgH~cfC~~Ca~~l~~~s-~~CP--iCR~ 366 (381)
.+..|.||.+.. -|+.+| | |-|. +|.+|.+++.... ..|| -|..
T Consensus 9 ~d~~CPvCksDrYLnPdik~linPECyHr-mCESCvdRIFs~GpAqCP~~gC~k 61 (314)
T COG5220 9 EDRRCPVCKSDRYLNPDIKILINPECYHR-MCESCVDRIFSRGPAQCPYKGCGK 61 (314)
T ss_pred hcccCCccccccccCCCeEEEECHHHHHH-HHHHHHHHHhcCCCCCCCCccHHH
Confidence 456899998754 455544 6 9999 9999999987655 5799 7854
No 92
>KOG3579 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=85.93 E-value=0.31 Score=47.83 Aligned_cols=33 Identities=27% Similarity=0.638 Sum_probs=28.9
Q ss_pred CCCcceecccCCcCeEEeCC----CCccccHHHHHHHH
Q 016892 322 PGKECVICMTEPKDTAVLPC----RHMCMCGECAKELR 355 (381)
Q Consensus 322 ~~~~CvICl~~~~d~vlLPC----gH~cfC~~Ca~~l~ 355 (381)
.-+.|.+|.+...|+-|+-| .|. ||+-|.++..
T Consensus 267 apLcCTLC~ERLEDTHFVQCPSVp~HK-FCFPCSResI 303 (352)
T KOG3579|consen 267 APLCCTLCHERLEDTHFVQCPSVPSHK-FCFPCSRESI 303 (352)
T ss_pred CceeehhhhhhhccCceeecCCCcccc-eecccCHHHH
Confidence 35799999999999999998 588 9999999843
No 93
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=85.81 E-value=0.35 Score=39.56 Aligned_cols=31 Identities=26% Similarity=0.692 Sum_probs=24.6
Q ss_pred CCCCcceecccCCcCe--EEeCCCCccccHHHHH
Q 016892 321 DPGKECVICMTEPKDT--AVLPCRHMCMCGECAK 352 (381)
Q Consensus 321 ~~~~~CvICl~~~~d~--vlLPCgH~cfC~~Ca~ 352 (381)
+.+..|.||.....+. ++.||||. ++..|++
T Consensus 76 ~~~~~C~vC~k~l~~~~f~~~p~~~v-~H~~C~~ 108 (109)
T PF10367_consen 76 TESTKCSVCGKPLGNSVFVVFPCGHV-VHYSCIK 108 (109)
T ss_pred CCCCCccCcCCcCCCceEEEeCCCeE-Eeccccc
Confidence 4567899999877554 45699999 9999975
No 94
>KOG4672 consensus Uncharacterized conserved low complexity protein [Function unknown]
Probab=85.24 E-value=5.7 Score=41.06 Aligned_cols=13 Identities=15% Similarity=0.168 Sum_probs=7.4
Q ss_pred eeccccceEEEEE
Q 016892 167 FDALFDGSITVFY 179 (381)
Q Consensus 167 FDa~~~~sItI~f 179 (381)
....++.++.|-+
T Consensus 430 lT~~VPa~lRVRR 442 (487)
T KOG4672|consen 430 LTRLVPAQLRVRR 442 (487)
T ss_pred HHhhcchheeeec
Confidence 3444556666665
No 95
>KOG2113 consensus Predicted RNA binding protein, contains KH domain [General function prediction only]
Probab=85.15 E-value=0.29 Score=48.69 Aligned_cols=57 Identities=12% Similarity=0.143 Sum_probs=47.0
Q ss_pred CCCCcceecccCCcCeEEeCCCCccccHHHHHHH-HhCCCCCccccccccceEEEEcC
Q 016892 321 DPGKECVICMTEPKDTAVLPCRHMCMCGECAKEL-RLQSNKCPICRQPIEELIEIKIN 377 (381)
Q Consensus 321 ~~~~~CvICl~~~~d~vlLPCgH~cfC~~Ca~~l-~~~s~~CPiCR~~I~~~i~I~i~ 377 (381)
.....|++|+++.....+.+|+|..||..|+... .++...|+||...+.....|.=.
T Consensus 134 ~~ti~~iqq~tnt~I~T~v~~~~~Vf~Vtg~~~nC~kra~s~eie~ta~~ra~~i~d~ 191 (394)
T KOG2113|consen 134 GATIKRIQQFTNTYIATPVRCGEPVFCVTGAPKNCVKRARSCEIEQTAVTRAGQIHDT 191 (394)
T ss_pred cCccchheecccceEeeeccCCCceEEEecCCcchhhhccccchhhhhhhhhhccccC
Confidence 3566899999999999999999999999998775 44556799999888887776543
No 96
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=81.65 E-value=1.1 Score=44.25 Aligned_cols=29 Identities=24% Similarity=0.728 Sum_probs=23.6
Q ss_pred CCCCccccHHHHHHHHhC-CCCCcccccccc
Q 016892 340 PCRHMCMCGECAKELRLQ-SNKCPICRQPIE 369 (381)
Q Consensus 340 PCgH~cfC~~Ca~~l~~~-s~~CPiCR~~I~ 369 (381)
+|+|. +|.+|...+... ...||.|-..+.
T Consensus 22 ~C~H~-lCEsCvd~iF~~g~~~CpeC~~iLR 51 (300)
T KOG3800|consen 22 ECGHR-LCESCVDRIFSLGPAQCPECMVILR 51 (300)
T ss_pred cccch-HHHHHHHHHHhcCCCCCCcccchhh
Confidence 79999 999999997654 468999976443
No 97
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=79.68 E-value=1 Score=32.41 Aligned_cols=39 Identities=28% Similarity=0.729 Sum_probs=24.2
Q ss_pred ceecccCCcC--eEEeCCCCcc----ccHHHHHHHHh--CCCCCccc
Q 016892 326 CVICMTEPKD--TAVLPCRHMC----MCGECAKELRL--QSNKCPIC 364 (381)
Q Consensus 326 CvICl~~~~d--~vlLPCgH~c----fC~~Ca~~l~~--~s~~CPiC 364 (381)
|.||++...+ .++.||+-.. ...+|+.+|.. .+.+|.+|
T Consensus 1 CrIC~~~~~~~~~li~pC~C~Gs~~~vH~~CL~~W~~~~~~~~C~~C 47 (47)
T PF12906_consen 1 CRICLEGEEEDEPLISPCRCKGSMKYVHRSCLERWIRESGNRKCEIC 47 (47)
T ss_dssp ETTTTEE-SSSS-EE-SSS-SSCCGSEECCHHHHHHHHHT-SB-TTT
T ss_pred CeEeCCcCCCCCceecccccCCCcchhHHHHHHHHHHhcCCCcCCCC
Confidence 7788876432 4677886432 58899999986 44679887
No 98
>COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=77.67 E-value=2.1 Score=47.59 Aligned_cols=50 Identities=32% Similarity=0.620 Sum_probs=38.6
Q ss_pred CCCCCcceecccCC--cCeEEeCCCCcc----ccHHHHHHHHhCC--CCCcccccccc
Q 016892 320 SDPGKECVICMTEP--KDTAVLPCRHMC----MCGECAKELRLQS--NKCPICRQPIE 369 (381)
Q Consensus 320 ~~~~~~CvICl~~~--~d~vlLPCgH~c----fC~~Ca~~l~~~s--~~CPiCR~~I~ 369 (381)
.+++..|.||..+. .+.++.||+... ++.+|+-+|..-+ .+|-||..+++
T Consensus 9 N~d~~~CRICr~e~~~d~pLfhPCKC~GSIkYiH~eCL~eW~~~s~~~kCdiChy~~~ 66 (1175)
T COG5183 9 NEDKRSCRICRTEDIRDDPLFHPCKCSGSIKYIHRECLMEWMECSGTKKCDICHYEYK 66 (1175)
T ss_pred CccchhceeecCCCCCCCcCcccccccchhHHHHHHHHHHHHhcCCCcceeeecceee
Confidence 45568999999764 577888987643 6889999998643 57999988765
No 99
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=77.06 E-value=2.2 Score=40.80 Aligned_cols=48 Identities=31% Similarity=0.608 Sum_probs=37.3
Q ss_pred CCCcceecccC--CcCeEEeCCCCccccHHHHHHHHhC--------CCCCccccccccc
Q 016892 322 PGKECVICMTE--PKDTAVLPCRHMCMCGECAKELRLQ--------SNKCPICRQPIEE 370 (381)
Q Consensus 322 ~~~~CvICl~~--~~d~vlLPCgH~cfC~~Ca~~l~~~--------s~~CPiCR~~I~~ 370 (381)
-...|..|-.. ..|++-|-|-|+ |.+.|+.+|.-+ .-.||.|..+|--
T Consensus 49 Y~pNC~LC~t~La~gdt~RLvCyhl-fHW~ClneraA~lPanTAPaGyqCP~Cs~eiFP 106 (299)
T KOG3970|consen 49 YNPNCRLCNTPLASGDTTRLVCYHL-FHWKCLNERAANLPANTAPAGYQCPCCSQEIFP 106 (299)
T ss_pred CCCCCceeCCccccCcceeehhhhh-HHHHHhhHHHhhCCCcCCCCcccCCCCCCccCC
Confidence 44568888764 478888999999 999999997643 2479999988754
No 100
>PHA03247 large tegument protein UL36; Provisional
Probab=76.03 E-value=53 Score=41.58 Aligned_cols=10 Identities=30% Similarity=0.687 Sum_probs=5.5
Q ss_pred HHHhhhhhcC
Q 016892 288 KVIRQILWVD 297 (381)
Q Consensus 288 ~v~kq~l~v~ 297 (381)
.-+||.+|..
T Consensus 3022 ~sl~q~~~~~ 3031 (3151)
T PHA03247 3022 VSLKQTLWPP 3031 (3151)
T ss_pred CCcccCCCCC
Confidence 3456666543
No 101
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=75.91 E-value=0.61 Score=50.91 Aligned_cols=48 Identities=29% Similarity=0.697 Sum_probs=39.5
Q ss_pred CCCcceecccCCcCeEEeCCCCccccHHHHHHHHhC---CCCCccccccccc
Q 016892 322 PGKECVICMTEPKDTAVLPCRHMCMCGECAKELRLQ---SNKCPICRQPIEE 370 (381)
Q Consensus 322 ~~~~CvICl~~~~d~vlLPCgH~cfC~~Ca~~l~~~---s~~CPiCR~~I~~ 370 (381)
...+|-||+....+.+.+-|.|. ||..|+..+..+ ...|++|+..++.
T Consensus 20 k~lEc~ic~~~~~~p~~~kc~~~-~l~~~~n~~f~~~~~~~~~~lc~~~~eK 70 (684)
T KOG4362|consen 20 KILECPICLEHVKEPSLLKCDHI-FLKFCLNKLFESKKGPKQCALCKSDIEK 70 (684)
T ss_pred hhccCCceeEEeeccchhhhhHH-HHhhhhhceeeccCccccchhhhhhhhh
Confidence 46799999999999999999999 999999885443 3479999976653
No 102
>KOG1923 consensus Rac1 GTPase effector FRL [Signal transduction mechanisms; Cytoskeleton]
Probab=74.53 E-value=12 Score=41.47 Aligned_cols=12 Identities=8% Similarity=-0.044 Sum_probs=5.6
Q ss_pred eeeeeeccCCce
Q 016892 138 VRNDVNVHKHTL 149 (381)
Q Consensus 138 irn~VNlrK~SL 149 (381)
+-|++-||+.-+
T Consensus 373 ~lnW~alKP~qv 384 (830)
T KOG1923|consen 373 SLNWLALKPIQV 384 (830)
T ss_pred CccccccCcccc
Confidence 334555555443
No 103
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=73.18 E-value=0.94 Score=48.98 Aligned_cols=37 Identities=32% Similarity=0.725 Sum_probs=28.9
Q ss_pred CCcceecccCC----cCeEEeCCCCccccHHHHHHHHhCCCCCc
Q 016892 323 GKECVICMTEP----KDTAVLPCRHMCMCGECAKELRLQSNKCP 362 (381)
Q Consensus 323 ~~~CvICl~~~----~d~vlLPCgH~cfC~~Ca~~l~~~s~~CP 362 (381)
-..|.||+..+ ...+.|-|||. .|..|++.+-.+ .||
T Consensus 11 ~l~c~ic~n~f~~~~~~Pvsl~cght-ic~~c~~~lyn~--scp 51 (861)
T KOG3161|consen 11 LLLCDICLNLFVVQRLEPVSLQCGHT-ICGHCVQLLYNA--SCP 51 (861)
T ss_pred HhhchHHHHHHHHHhcCcccccccch-HHHHHHHhHhhc--cCC
Confidence 45788997765 45566779999 999999988744 677
No 104
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=72.67 E-value=76 Score=35.64 Aligned_cols=11 Identities=36% Similarity=0.860 Sum_probs=4.5
Q ss_pred CCCCCCCCCcc
Q 016892 120 QSQVGPPPPYV 130 (381)
Q Consensus 120 ~~~~~~~~~~v 130 (381)
|+..-||||++
T Consensus 706 g~~~~PPPP~~ 716 (894)
T KOG0132|consen 706 GGHGIPPPPFF 716 (894)
T ss_pred CCCCCCCCccc
Confidence 33333444444
No 105
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=72.57 E-value=0.97 Score=50.25 Aligned_cols=48 Identities=19% Similarity=0.495 Sum_probs=37.0
Q ss_pred CCcceecccCCcCeE-EeCCCCccccHHHHHHHHhCCCCCccccccccceEEE
Q 016892 323 GKECVICMTEPKDTA-VLPCRHMCMCGECAKELRLQSNKCPICRQPIEELIEI 374 (381)
Q Consensus 323 ~~~CvICl~~~~d~v-lLPCgH~cfC~~Ca~~l~~~s~~CPiCR~~I~~~i~I 374 (381)
...|.+|-....-.+ ..-|||. ++..|+. .....||-|+...+.++++
T Consensus 840 ~skCs~C~~~LdlP~VhF~CgHs-yHqhC~e---~~~~~CP~C~~e~~~~m~l 888 (933)
T KOG2114|consen 840 VSKCSACEGTLDLPFVHFLCGHS-YHQHCLE---DKEDKCPKCLPELRGVMDL 888 (933)
T ss_pred eeeecccCCccccceeeeecccH-HHHHhhc---cCcccCCccchhhhhhHHH
Confidence 358999988776554 4589999 9999988 3446899999977766543
No 106
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=72.41 E-value=0.98 Score=46.24 Aligned_cols=46 Identities=26% Similarity=0.655 Sum_probs=35.4
Q ss_pred CCCCCcceecccCC----cCeEEeCCCCccccHHHHHHHHhCC--CCCccccc
Q 016892 320 SDPGKECVICMTEP----KDTAVLPCRHMCMCGECAKELRLQS--NKCPICRQ 366 (381)
Q Consensus 320 ~~~~~~CvICl~~~----~d~vlLPCgH~cfC~~Ca~~l~~~s--~~CPiCR~ 366 (381)
.+.+..|..|-+.. .+--.|||.|. |...|+..+..+. ..||-||.
T Consensus 362 ~e~~L~Cg~CGe~~Glk~e~LqALpCsHI-fH~rCl~e~L~~n~~rsCP~Crk 413 (518)
T KOG1941|consen 362 EETELYCGLCGESIGLKNERLQALPCSHI-FHLRCLQEILENNGTRSCPNCRK 413 (518)
T ss_pred HHHhhhhhhhhhhhcCCcccccccchhHH-HHHHHHHHHHHhCCCCCCccHHH
Confidence 35678899997643 33456899999 9999999966544 57999994
No 107
>PHA03247 large tegument protein UL36; Provisional
Probab=71.69 E-value=32 Score=43.32 Aligned_cols=9 Identities=22% Similarity=0.261 Sum_probs=3.5
Q ss_pred eeccCCcee
Q 016892 142 VNVHKHTLK 150 (381)
Q Consensus 142 VNlrK~SLr 150 (381)
|+.--+||-
T Consensus 3004 ~~~w~~~~~ 3012 (3151)
T PHA03247 3004 VSSWASSLA 3012 (3151)
T ss_pred cchhhhhcc
Confidence 333344443
No 108
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=70.46 E-value=3.7 Score=41.12 Aligned_cols=48 Identities=25% Similarity=0.616 Sum_probs=31.0
Q ss_pred CCCCcceecccCC-------------------cCeEEeCCCCccccHHHHHH-HHhC---------CCCCccccccccc
Q 016892 321 DPGKECVICMTEP-------------------KDTAVLPCRHMCMCGECAKE-LRLQ---------SNKCPICRQPIEE 370 (381)
Q Consensus 321 ~~~~~CvICl~~~-------------------~d~vlLPCgH~cfC~~Ca~~-l~~~---------s~~CPiCR~~I~~ 370 (381)
..+++|.+|+..- -+-.|-||||+ |++=... |.+. ...||.|-+.+..
T Consensus 339 ~~~r~CPmC~~~gp~V~L~lG~E~~f~vD~G~pthaF~PCGHv--~sekt~~YWs~iplPhGT~~f~a~CPFC~~~L~g 415 (429)
T KOG3842|consen 339 QRERECPMCRVVGPYVPLWLGCEAGFYVDAGPPTHAFNPCGHV--CSEKTVKYWSQIPLPHGTHAFHAACPFCATQLAG 415 (429)
T ss_pred cccCcCCeeeeecceeeeeccccceeEecCCCcccccCCcccc--cchhhhhHhhcCcCCCccccccccCcchhhhhcc
Confidence 4578999998642 23367799998 4444333 4321 1469999887764
No 109
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=69.51 E-value=2.1 Score=47.44 Aligned_cols=51 Identities=18% Similarity=0.279 Sum_probs=34.2
Q ss_pred CCCCcceecccCCcCe-EEeC---CCCccccHHHHHHHHhC------CCCCccccccccceE
Q 016892 321 DPGKECVICMTEPKDT-AVLP---CRHMCMCGECAKELRLQ------SNKCPICRQPIEELI 372 (381)
Q Consensus 321 ~~~~~CvICl~~~~d~-vlLP---CgH~cfC~~Ca~~l~~~------s~~CPiCR~~I~~~i 372 (381)
.....|.||++...|. -++| |+|. +|..|+..|..+ ...|++|..-|....
T Consensus 97 ~Ss~~C~~E~S~~~ds~~i~P~~~~~~~-~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWs 157 (1134)
T KOG0825|consen 97 DTSPVCEKEHSPDVDSSNICPVQTHVEN-QCPNCLKSCNDQLEESEKHTAHYFCEECVGSWS 157 (1134)
T ss_pred cccchhheecCCcccccCcCchhhhhhh-hhhHHHHHHHHHhhccccccccccHHHHhhhhh
Confidence 3445666666663332 2334 9999 999999998753 246888887776543
No 110
>KOG3053 consensus Uncharacterized conserved protein [Function unknown]
Probab=69.23 E-value=2.5 Score=41.06 Aligned_cols=53 Identities=23% Similarity=0.562 Sum_probs=36.9
Q ss_pred CCCCCCCcceecccCCcCeE----EeCCC-----CccccHHHHHHHHhCC--------CCCccccccccce
Q 016892 318 EDSDPGKECVICMTEPKDTA----VLPCR-----HMCMCGECAKELRLQS--------NKCPICRQPIEEL 371 (381)
Q Consensus 318 ~~~~~~~~CvICl~~~~d~v----lLPCg-----H~cfC~~Ca~~l~~~s--------~~CPiCR~~I~~~ 371 (381)
++.+.++.|-||+....|-. +-||+ |. .+..|+..|...+ -.||.|+.+..-+
T Consensus 15 ~~~e~eR~CWiCF~TdeDn~~a~WV~PCrCRGt~KW-VHqsCL~rWiDEK~~~n~~q~V~C~QCqTEYiiv 84 (293)
T KOG3053|consen 15 DNQELERCCWICFATDEDNRLAAWVHPCRCRGTTKW-VHQSCLSRWIDEKQRGNPLQTVSCPQCQTEYIIV 84 (293)
T ss_pred CccccceeEEEEeccCcccchhhhcccccccCccHH-HHHHHHHHHHhHHhcCCCCceeechhhcchheee
Confidence 34567889999997665442 34776 44 6889999986532 2599999876543
No 111
>KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=68.43 E-value=6 Score=39.25 Aligned_cols=30 Identities=30% Similarity=0.749 Sum_probs=22.8
Q ss_pred CCCccccHHHHHHHH-------------hCCCCCccccccccce
Q 016892 341 CRHMCMCGECAKELR-------------LQSNKCPICRQPIEEL 371 (381)
Q Consensus 341 CgH~cfC~~Ca~~l~-------------~~s~~CPiCR~~I~~~ 371 (381)
|+-+ -|.+|+.+|. .++..||.||+.+.-+
T Consensus 325 crp~-wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~fci~ 367 (381)
T KOG3899|consen 325 CRPL-WCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNFCIR 367 (381)
T ss_pred cccH-HHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhceEEe
Confidence 6666 7999988763 3557899999987643
No 112
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=67.68 E-value=3.2 Score=41.66 Aligned_cols=47 Identities=34% Similarity=0.807 Sum_probs=38.3
Q ss_pred CCcceecccCC--cCeEEeC--CCCccccHHHHHHHHhCCCCCccccccccc
Q 016892 323 GKECVICMTEP--KDTAVLP--CRHMCMCGECAKELRLQSNKCPICRQPIEE 370 (381)
Q Consensus 323 ~~~CvICl~~~--~d~vlLP--CgH~cfC~~Ca~~l~~~s~~CPiCR~~I~~ 370 (381)
...|.||.+.. .+..+|| |+|. +|..|.........+|++||.....
T Consensus 249 ~~s~p~~~~~~~~~d~~~lP~~~~~~-~~l~~~~t~~~~~~~~~~~rk~~~~ 299 (327)
T KOG2068|consen 249 PPSCPICYEDLDLTDSNFLPCPCGFR-LCLFCHKTISDGDGRCPGCRKPYER 299 (327)
T ss_pred CCCCCCCCCccccccccccccccccc-chhhhhhcccccCCCCCccCCcccc
Confidence 37899999854 4555665 8999 9999999988888899999977654
No 113
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=66.56 E-value=1.3 Score=51.21 Aligned_cols=47 Identities=26% Similarity=0.598 Sum_probs=39.1
Q ss_pred CCCcceecccCCc-CeEEeCCCCccccHHHHHHHHhCCCCCcccccccc
Q 016892 322 PGKECVICMTEPK-DTAVLPCRHMCMCGECAKELRLQSNKCPICRQPIE 369 (381)
Q Consensus 322 ~~~~CvICl~~~~-d~vlLPCgH~cfC~~Ca~~l~~~s~~CPiCR~~I~ 369 (381)
....|.||++..+ -..+.-|||. +|..|...|...+..|++|...+.
T Consensus 1152 ~~~~c~ic~dil~~~~~I~~cgh~-~c~~c~~~~l~~~s~~~~~ksi~~ 1199 (1394)
T KOG0298|consen 1152 GHFVCEICLDILRNQGGIAGCGHE-PCCRCDELWLYASSRCPICKSIKG 1199 (1394)
T ss_pred cccchHHHHHHHHhcCCeeeechh-HhhhHHHHHHHHhccCcchhhhhh
Confidence 4458999999887 4456689999 999999999999999999975443
No 114
>PLN02189 cellulose synthase
Probab=64.26 E-value=5.5 Score=45.67 Aligned_cols=49 Identities=24% Similarity=0.576 Sum_probs=34.3
Q ss_pred CCCCcceecccCCc----CeEEeCC---CCccccHHHHHHHHh-CCCCCccccccccc
Q 016892 321 DPGKECVICMTEPK----DTAVLPC---RHMCMCGECAKELRL-QSNKCPICRQPIEE 370 (381)
Q Consensus 321 ~~~~~CvICl~~~~----d~vlLPC---gH~cfC~~Ca~~l~~-~s~~CPiCR~~I~~ 370 (381)
-+...|.||-++.- .-.+..| +-- .|..|++--++ .+..||.|++...+
T Consensus 32 ~~~~~C~iCgd~vg~~~~g~~fvaC~~C~fp-vCr~Cyeyer~eg~q~CpqCkt~Y~r 88 (1040)
T PLN02189 32 LDGQVCEICGDEIGLTVDGDLFVACNECGFP-VCRPCYEYERREGTQNCPQCKTRYKR 88 (1040)
T ss_pred ccCccccccccccCcCCCCCEEEeeccCCCc-cccchhhhhhhcCCccCcccCCchhh
Confidence 35669999998742 2245555 333 89999977444 45679999998874
No 115
>KOG3113 consensus Uncharacterized conserved protein [Function unknown]
Probab=63.53 E-value=8.2 Score=37.58 Aligned_cols=57 Identities=19% Similarity=0.292 Sum_probs=41.1
Q ss_pred CCCCCcceecccCC----cCeEEeCCCCccccHHHHHHHHhCCCCCccccccccceEEEEcCCC
Q 016892 320 SDPGKECVICMTEP----KDTAVLPCRHMCMCGECAKELRLQSNKCPICRQPIEELIEIKINSG 379 (381)
Q Consensus 320 ~~~~~~CvICl~~~----~d~vlLPCgH~cfC~~Ca~~l~~~s~~CPiCR~~I~~~i~I~i~~~ 379 (381)
......|.|---++ +-.++..|||+ |-..-++++. ...|.+|.+.+...-.|-||-+
T Consensus 108 ~~a~fiCPvtgleMng~~~F~~l~~CGcV-~SerAlKeik--as~C~~C~a~y~~~dvIvlNg~ 168 (293)
T KOG3113|consen 108 QRARFICPVTGLEMNGKYRFCALRCCGCV-FSERALKEIK--ASVCHVCGAAYQEDDVIVLNGT 168 (293)
T ss_pred ccceeecccccceecceEEEEEEecccee-ccHHHHHHhh--hccccccCCcccccCeEeeCCC
Confidence 34456777765443 44567799999 8776666554 5789999999998877777654
No 116
>KOG1923 consensus Rac1 GTPase effector FRL [Signal transduction mechanisms; Cytoskeleton]
Probab=63.25 E-value=17 Score=40.34 Aligned_cols=6 Identities=0% Similarity=-0.186 Sum_probs=3.4
Q ss_pred CCCCCC
Q 016892 90 NPMMGR 95 (381)
Q Consensus 90 ~~~~~~ 95 (381)
+||-..
T Consensus 334 p~l~~~ 339 (830)
T KOG1923|consen 334 PFLLTF 339 (830)
T ss_pred CcccCC
Confidence 456665
No 117
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=62.11 E-value=6 Score=40.67 Aligned_cols=44 Identities=20% Similarity=0.477 Sum_probs=31.0
Q ss_pred CcceecccCC---cCeEEeCCCCccccHHHHHHHHhCCC---CCccccccc
Q 016892 324 KECVICMTEP---KDTAVLPCRHMCMCGECAKELRLQSN---KCPICRQPI 368 (381)
Q Consensus 324 ~~CvICl~~~---~d~vlLPCgH~cfC~~Ca~~l~~~s~---~CPiCR~~I 368 (381)
..|.|=.+.- --.+.|.|||+ .|.+=+.+|..... +||.|-...
T Consensus 335 F~CPVlKeqtsdeNPPm~L~CGHV-ISkdAlnrLS~ng~~sfKCPYCP~e~ 384 (394)
T KOG2817|consen 335 FICPVLKEQTSDENPPMMLICGHV-ISKDALNRLSKNGSQSFKCPYCPVEQ 384 (394)
T ss_pred eecccchhhccCCCCCeeeeccce-ecHHHHHHHhhCCCeeeeCCCCCccc
Confidence 4566644322 23477899999 99999999877544 799995443
No 118
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=61.68 E-value=1.6 Score=42.85 Aligned_cols=53 Identities=26% Similarity=0.499 Sum_probs=29.4
Q ss_pred CCCcceecccCCcCeEEeC-----CCCccccHHHHHHHHhCCCCCccccccccceEEEE
Q 016892 322 PGKECVICMTEPKDTAVLP-----CRHMCMCGECAKELRLQSNKCPICRQPIEELIEIK 375 (381)
Q Consensus 322 ~~~~CvICl~~~~d~vlLP-----CgH~cfC~~Ca~~l~~~s~~CPiCR~~I~~~i~I~ 375 (381)
....|.||-+...-.++.. =+|+ +|.-|...|...-..||.|-..-...+..+
T Consensus 171 ~~g~CPvCGs~P~~s~l~~~~~~G~R~L-~Cs~C~t~W~~~R~~Cp~Cg~~~~~~l~~~ 228 (290)
T PF04216_consen 171 QRGYCPVCGSPPVLSVLRGGEREGKRYL-HCSLCGTEWRFVRIKCPYCGNTDHEKLEYF 228 (290)
T ss_dssp T-SS-TTT---EEEEEEE------EEEE-EETTT--EEE--TTS-TTT---SS-EEE--
T ss_pred cCCcCCCCCCcCceEEEecCCCCccEEE-EcCCCCCeeeecCCCCcCCCCCCCcceeeE
Confidence 4579999999987777764 3677 999999999988889999988776666654
No 119
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=59.84 E-value=3 Score=42.91 Aligned_cols=48 Identities=27% Similarity=0.656 Sum_probs=0.0
Q ss_pred CCCcceecccC-------------------CcCeEEeCCCCccccHHHHHHHHhC---------CCCCccccccccc
Q 016892 322 PGKECVICMTE-------------------PKDTAVLPCRHMCMCGECAKELRLQ---------SNKCPICRQPIEE 370 (381)
Q Consensus 322 ~~~~CvICl~~-------------------~~d~vlLPCgH~cfC~~Ca~~l~~~---------s~~CPiCR~~I~~ 370 (381)
..++|.+|+.. .-+-+|-||||+ .=...++-|.+. ...||.|-..+..
T Consensus 327 ~~r~CPlCr~~g~~V~L~mG~E~afyvD~~~pthaF~PCGHv-~SekTa~yWs~i~lPhGt~~f~a~CPFCa~~L~g 402 (416)
T PF04710_consen 327 RSRTCPLCRQVGPYVPLWMGCEPAFYVDSGPPTHAFNPCGHV-CSEKTAKYWSQIPLPHGTHAFHAACPFCATPLDG 402 (416)
T ss_dssp -----------------------------------------------------------------------------
T ss_pred ccccCCCccccCCceeEeeccccceeecCCCCceeecccccc-cchhhhhhhhcCCCCCCcccccccCCcccCcccC
Confidence 47899999862 123478899999 334445555432 1479999998875
No 120
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=58.13 E-value=9.9 Score=27.64 Aligned_cols=43 Identities=26% Similarity=0.599 Sum_probs=19.2
Q ss_pred CcceecccCCcCeEEe-CCCCccccHHHHHHHH--hCC--CCCcccccc
Q 016892 324 KECVICMTEPKDTAVL-PCRHMCMCGECAKELR--LQS--NKCPICRQP 367 (381)
Q Consensus 324 ~~CvICl~~~~d~vlL-PCgH~cfC~~Ca~~l~--~~s--~~CPiCR~~ 367 (381)
..|.|.+......+-. .|.|+ -|++=..-+. .++ -+||+|.++
T Consensus 3 L~CPls~~~i~~P~Rg~~C~H~-~CFDl~~fl~~~~~~~~W~CPiC~~~ 50 (50)
T PF02891_consen 3 LRCPLSFQRIRIPVRGKNCKHL-QCFDLESFLESNQRTPKWKCPICNKP 50 (50)
T ss_dssp SB-TTTSSB-SSEEEETT--SS---EEHHHHHHHHHHS---B-TTT---
T ss_pred eeCCCCCCEEEeCccCCcCccc-ceECHHHHHHHhhccCCeECcCCcCc
Confidence 4688888777777654 69999 6654322221 112 369999863
No 121
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=57.15 E-value=5.4 Score=39.31 Aligned_cols=40 Identities=38% Similarity=0.839 Sum_probs=33.6
Q ss_pred ceecccC----CcCeEEeCCCCccccHHHHHHHHhCCCCCccccc
Q 016892 326 CVICMTE----PKDTAVLPCRHMCMCGECAKELRLQSNKCPICRQ 366 (381)
Q Consensus 326 CvICl~~----~~d~vlLPCgH~cfC~~Ca~~l~~~s~~CPiCR~ 366 (381)
|.||.+. ..++.+++|||. +...|........-.||+|-.
T Consensus 161 cPic~e~l~~s~~~~~~~~CgH~-~h~~cf~e~~~~~y~CP~C~~ 204 (276)
T KOG1940|consen 161 CPICKEYLFLSFEDAGVLKCGHY-MHSRCFEEMICEGYTCPICSK 204 (276)
T ss_pred CchhHHHhccccccCCccCcccc-hHHHHHHHHhccCCCCCcccc
Confidence 9999875 366778899999 889999997766678999987
No 122
>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]
Probab=54.68 E-value=8.1 Score=43.30 Aligned_cols=46 Identities=35% Similarity=0.661 Sum_probs=34.4
Q ss_pred CCCcceecccCCcCeE-Ee---CCCCccccHHHHHHHHhCC-------CCCccccccc
Q 016892 322 PGKECVICMTEPKDTA-VL---PCRHMCMCGECAKELRLQS-------NKCPICRQPI 368 (381)
Q Consensus 322 ~~~~CvICl~~~~d~v-lL---PCgH~cfC~~Ca~~l~~~s-------~~CPiCR~~I 368 (381)
+..+|.||++....+. ++ .|-|+ |...|++.|..+. -+||-|+...
T Consensus 190 ~~yeCmIC~e~I~~t~~~WSC~sCYhV-FHl~CI~~WArs~ek~~~~~WrCP~Cqsv~ 246 (950)
T KOG1952|consen 190 RKYECMICTERIKRTAPVWSCKSCYHV-FHLNCIKKWARSSEKTGQDGWRCPACQSVS 246 (950)
T ss_pred CceEEEEeeeeccccCCceecchhhhh-hhHHHHHHHHHHhhhccCccccCCcccchh
Confidence 4679999999875442 33 47799 9999999997532 3699998533
No 123
>PLN02436 cellulose synthase A
Probab=53.14 E-value=9.7 Score=43.91 Aligned_cols=49 Identities=27% Similarity=0.604 Sum_probs=34.1
Q ss_pred CCCCcceecccCCcCe----EEeCC---CCccccHHHHHHHHh-CCCCCccccccccc
Q 016892 321 DPGKECVICMTEPKDT----AVLPC---RHMCMCGECAKELRL-QSNKCPICRQPIEE 370 (381)
Q Consensus 321 ~~~~~CvICl~~~~d~----vlLPC---gH~cfC~~Ca~~l~~-~s~~CPiCR~~I~~ 370 (381)
-....|.||-++.-.+ +|.-| +-- .|..|.+--++ .+..||.|++...+
T Consensus 34 ~~~~iCqICGD~Vg~t~dGe~FVACn~C~fp-vCr~Cyeyer~eg~~~Cpqckt~Y~r 90 (1094)
T PLN02436 34 LSGQTCQICGDEIELTVDGEPFVACNECAFP-VCRPCYEYERREGNQACPQCKTRYKR 90 (1094)
T ss_pred cCCccccccccccCcCCCCCEEEeeccCCCc-cccchhhhhhhcCCccCcccCCchhh
Confidence 3566999999874222 45555 433 89999976444 45679999998874
No 124
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=50.15 E-value=17 Score=42.06 Aligned_cols=49 Identities=24% Similarity=0.601 Sum_probs=33.5
Q ss_pred CCCCcceecccCCcCe----EEeCC---CCccccHHHHHHHH-hCCCCCccccccccc
Q 016892 321 DPGKECVICMTEPKDT----AVLPC---RHMCMCGECAKELR-LQSNKCPICRQPIEE 370 (381)
Q Consensus 321 ~~~~~CvICl~~~~d~----vlLPC---gH~cfC~~Ca~~l~-~~s~~CPiCR~~I~~ 370 (381)
-+...|.||-++.-.+ ++.-| +-- .|..|++-=+ ..+..||.|++...+
T Consensus 15 ~~~qiCqICGD~vg~~~~Ge~FVAC~eC~FP-VCrpCYEYEr~eG~q~CPqCktrYkr 71 (1079)
T PLN02638 15 GGGQVCQICGDNVGKTVDGEPFVACDVCAFP-VCRPCYEYERKDGNQSCPQCKTKYKR 71 (1079)
T ss_pred cCCceeeecccccCcCCCCCEEEEeccCCCc-cccchhhhhhhcCCccCCccCCchhh
Confidence 3566999999874222 44444 433 8999997644 455679999988773
No 125
>KOG2807 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription; Replication, recombination and repair]
Probab=50.02 E-value=14 Score=37.26 Aligned_cols=45 Identities=20% Similarity=0.591 Sum_probs=33.0
Q ss_pred CCCCcceecccCCcCeEE---eCCCCccccHHHHHHHHhCCCCCccccc
Q 016892 321 DPGKECVICMTEPKDTAV---LPCRHMCMCGECAKELRLQSNKCPICRQ 366 (381)
Q Consensus 321 ~~~~~CvICl~~~~d~vl---LPCgH~cfC~~Ca~~l~~~s~~CPiCR~ 366 (381)
.....|-.|..+....-. -.|.|. ||.+|-.-+..+-..||-|..
T Consensus 328 ~~~~~Cf~C~~~~~~~~~y~C~~Ck~~-FCldCDv~iHesLh~CpgCeh 375 (378)
T KOG2807|consen 328 NGSRFCFACQGELLSSGRYRCESCKNV-FCLDCDVFIHESLHNCPGCEH 375 (378)
T ss_pred CCCcceeeeccccCCCCcEEchhccce-eeccchHHHHhhhhcCCCcCC
Confidence 345569999666544422 258999 999998777766678999963
No 126
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=49.48 E-value=2.4e+02 Score=29.00 Aligned_cols=11 Identities=27% Similarity=0.389 Sum_probs=4.7
Q ss_pred CCCcCcccCCC
Q 016892 222 LGFYELDDLSK 232 (381)
Q Consensus 222 l~~~~~~eL~~ 232 (381)
||.-|.+|+.+
T Consensus 357 lSeAEFEdiM~ 367 (498)
T KOG4849|consen 357 LSEAEFEDIMT 367 (498)
T ss_pred chHHHHHHHHh
Confidence 34444444444
No 127
>TIGR01562 FdhE formate dehydrogenase accessory protein FdhE. The only sequence scoring between trusted and noise is that from Aquifex aeolicus, which shows certain structural differences from the proteobacterial forms in the alignment. However it is notable that A. aeolicus also has a sequence scoring above trusted to the alpha subunit of formate dehydrogenase (TIGR01553).
Probab=49.13 E-value=6.9 Score=39.11 Aligned_cols=45 Identities=27% Similarity=0.549 Sum_probs=35.4
Q ss_pred CCCcceecccCCcCeEEeC------CCCccccHHHHHHHHhCCCCCcccccc
Q 016892 322 PGKECVICMTEPKDTAVLP------CRHMCMCGECAKELRLQSNKCPICRQP 367 (381)
Q Consensus 322 ~~~~CvICl~~~~d~vlLP------CgH~cfC~~Ca~~l~~~s~~CPiCR~~ 367 (381)
....|.||-+...-.++.- =+|+ .|.-|...|...-.+|+.|-..
T Consensus 183 ~~~~CPvCGs~P~~s~~~~~~~~~G~RyL-~CslC~teW~~~R~~C~~Cg~~ 233 (305)
T TIGR01562 183 SRTLCPACGSPPVASMVRQGGKETGLRYL-SCSLCATEWHYVRVKCSHCEES 233 (305)
T ss_pred CCCcCCCCCChhhhhhhcccCCCCCceEE-EcCCCCCcccccCccCCCCCCC
Confidence 4569999999886554432 2466 9999999999988899999874
No 128
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=48.46 E-value=5.9 Score=40.76 Aligned_cols=32 Identities=41% Similarity=0.980 Sum_probs=23.2
Q ss_pred CCCcceecccCCcCe----EEeCCCCccccHHHHHHH
Q 016892 322 PGKECVICMTEPKDT----AVLPCRHMCMCGECAKEL 354 (381)
Q Consensus 322 ~~~~CvICl~~~~d~----vlLPCgH~cfC~~Ca~~l 354 (381)
...+|.||+.+.... .++-|+|. ||.+|.++-
T Consensus 145 ~~~~C~iC~~e~~~~~~~f~~~~C~H~-fC~~C~k~~ 180 (384)
T KOG1812|consen 145 PKEECGICFVEDPEAEDMFSVLKCGHR-FCKDCVKQH 180 (384)
T ss_pred ccccCccCccccccHhhhHHHhcccch-hhhHHhHHH
Confidence 467999999443222 24569999 999999863
No 129
>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=48.01 E-value=7.7 Score=35.94 Aligned_cols=50 Identities=24% Similarity=0.491 Sum_probs=35.4
Q ss_pred CCCcceecccCCcCeE-------EeCCCCccccHHHHHHHHhC------C-----CCCccccccccceE
Q 016892 322 PGKECVICMTEPKDTA-------VLPCRHMCMCGECAKELRLQ------S-----NKCPICRQPIEELI 372 (381)
Q Consensus 322 ~~~~CvICl~~~~d~v-------lLPCgH~cfC~~Ca~~l~~~------s-----~~CPiCR~~I~~~i 372 (381)
....|.||+...-+.+ -..||.- |..-|+..|+.. + ..||.|..+|.-.+
T Consensus 164 ~~~~cgicyayqldGTipDqtCdN~qCgkp-FHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~PialKm 231 (234)
T KOG3268|consen 164 ELGACGICYAYQLDGTIPDQTCDNIQCGKP-FHQICLTDWLRGILTSRQSFDIIFGECPYCSDPIALKM 231 (234)
T ss_pred hhhcccceeeeecCCccccccccccccCCc-HHHHHHHHHHHHHhhccceeeeeeccCCCCCCcceeec
Confidence 4568999986543332 2469988 999999998652 2 57999998876443
No 130
>PLN02400 cellulose synthase
Probab=47.92 E-value=11 Score=43.43 Aligned_cols=49 Identities=22% Similarity=0.528 Sum_probs=33.2
Q ss_pred CCCCcceecccCCcCe----EEeCC---CCccccHHHHHH-HHhCCCCCccccccccc
Q 016892 321 DPGKECVICMTEPKDT----AVLPC---RHMCMCGECAKE-LRLQSNKCPICRQPIEE 370 (381)
Q Consensus 321 ~~~~~CvICl~~~~d~----vlLPC---gH~cfC~~Ca~~-l~~~s~~CPiCR~~I~~ 370 (381)
-++..|.||-++.-.+ +|.-| +-- .|..|++- -+..+..||.|++...+
T Consensus 34 ~~gqiCqICGD~VG~t~dGe~FVAC~eCaFP-VCRpCYEYERkeGnq~CPQCkTrYkR 90 (1085)
T PLN02400 34 LNGQICQICGDDVGVTETGDVFVACNECAFP-VCRPCYEYERKDGTQCCPQCKTRYRR 90 (1085)
T ss_pred cCCceeeecccccCcCCCCCEEEEEccCCCc-cccchhheecccCCccCcccCCcccc
Confidence 3566999999874222 34444 443 89999975 33345679999998774
No 131
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=47.04 E-value=11 Score=39.30 Aligned_cols=54 Identities=24% Similarity=0.370 Sum_probs=38.5
Q ss_pred CCCCcceecccCCcC-eEEeCCCCccccHHHHHHHHhCC--------CCC--ccccccccceEEEE
Q 016892 321 DPGKECVICMTEPKD-TAVLPCRHMCMCGECAKELRLQS--------NKC--PICRQPIEELIEIK 375 (381)
Q Consensus 321 ~~~~~CvICl~~~~d-~vlLPCgH~cfC~~Ca~~l~~~s--------~~C--PiCR~~I~~~i~I~ 375 (381)
.....|-||++.... ++.+.|+|. ||..|......+. -+| .-|++.+.......
T Consensus 68 ~~~~~c~ic~~~~~~~~~~~~c~H~-~c~~cw~~yl~~kI~~~~~~~i~cp~~~C~a~v~~~~i~~ 132 (444)
T KOG1815|consen 68 KGDVQCGICVESYDGEIIGLGCGHP-FCPPCWTGYLGTKIHEGEEAKIKCPAHGCPALVGEDTVEK 132 (444)
T ss_pred CccccCCcccCCCcchhhhcCCCcH-HHHHHHHHHhhheeeccccccccCCCCCccccCCCceeee
Confidence 456799999999885 777899999 9999998843221 134 45777777544333
No 132
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=46.98 E-value=8.7 Score=38.48 Aligned_cols=52 Identities=23% Similarity=0.478 Sum_probs=38.5
Q ss_pred CCCCcceecccCCcCeEEeC-----CCCccccHHHHHHHHhCCCCCccccccccceEEEE
Q 016892 321 DPGKECVICMTEPKDTAVLP-----CRHMCMCGECAKELRLQSNKCPICRQPIEELIEIK 375 (381)
Q Consensus 321 ~~~~~CvICl~~~~d~vlLP-----CgH~cfC~~Ca~~l~~~s~~CPiCR~~I~~~i~I~ 375 (381)
+....|.||-+.+.-.++.- =+|+ .|.-|...|...-.+|+.|-. .+.+.++
T Consensus 185 ~~~~~CPvCGs~P~~s~v~~~~~~G~RyL-~CslC~teW~~~R~~C~~Cg~--~~~l~y~ 241 (309)
T PRK03564 185 EQRQFCPVCGSMPVSSVVQIGTTQGLRYL-HCNLCESEWHVVRVKCSNCEQ--SGKLHYW 241 (309)
T ss_pred cCCCCCCCCCCcchhheeeccCCCCceEE-EcCCCCCcccccCccCCCCCC--CCceeee
Confidence 35689999999886554421 2466 899999999998889999976 3444443
No 133
>KOG0801 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=44.87 E-value=11 Score=34.51 Aligned_cols=22 Identities=55% Similarity=1.004 Sum_probs=15.2
Q ss_pred CCCCcceecccCC--cCe-EEeCCC
Q 016892 321 DPGKECVICMTEP--KDT-AVLPCR 342 (381)
Q Consensus 321 ~~~~~CvICl~~~--~d~-vlLPCg 342 (381)
++..||+||+++. -|+ .-|||-
T Consensus 175 ddkGECvICLEdL~~GdtIARLPCL 199 (205)
T KOG0801|consen 175 DDKGECVICLEDLEAGDTIARLPCL 199 (205)
T ss_pred ccCCcEEEEhhhccCCCceeccceE
Confidence 4567999999975 233 447874
No 134
>KOG1609 consensus Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=41.40 E-value=21 Score=34.53 Aligned_cols=49 Identities=22% Similarity=0.520 Sum_probs=35.2
Q ss_pred CCcceecccCCcC----eEEeCCCCcc----ccHHHHHHHHh--CCCCCccccccccce
Q 016892 323 GKECVICMTEPKD----TAVLPCRHMC----MCGECAKELRL--QSNKCPICRQPIEEL 371 (381)
Q Consensus 323 ~~~CvICl~~~~d----~vlLPCgH~c----fC~~Ca~~l~~--~s~~CPiCR~~I~~~ 371 (381)
+..|.||..+.-. .++.||.-.. ....|+..|.. .+..|-+|.......
T Consensus 78 ~~~cRIc~~~~~~~~~~~l~~pC~C~g~l~~vH~~cl~~W~~~~~~~~CeiC~~~~~~~ 136 (323)
T KOG1609|consen 78 GPICRICHEEDEESNGLLLISPCSCKGSLAYVHRSCLEKWFSIKGNITCEICKSFFINV 136 (323)
T ss_pred CCcEEEEecccccccccccccCccccCcHHHHHHHHHHhhhccccCeeeecccccceec
Confidence 5789999986643 3566876322 47899999987 446799998766544
No 135
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=41.02 E-value=25 Score=39.20 Aligned_cols=40 Identities=18% Similarity=0.341 Sum_probs=34.5
Q ss_pred CCcceecccCCcCeEEeC--CCCccccHHHHHHHHhCCCCCcc
Q 016892 323 GKECVICMTEPKDTAVLP--CRHMCMCGECAKELRLQSNKCPI 363 (381)
Q Consensus 323 ~~~CvICl~~~~d~vlLP--CgH~cfC~~Ca~~l~~~s~~CPi 363 (381)
...|+||-.-.+...+.. |+|. ...+|++.|.+.+..|+.
T Consensus 779 ~~~CtVC~~vi~G~~~~c~~C~H~-gH~sh~~sw~~~~s~ca~ 820 (839)
T KOG0269|consen 779 SAKCTVCDLVIRGVDVWCQVCGHG-GHDSHLKSWFFKASPCAK 820 (839)
T ss_pred hcCceeecceeeeeEeeccccccc-ccHHHHHHHHhcCCCCcc
Confidence 348999998888887775 9999 999999999999888876
No 136
>COG4306 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=40.15 E-value=15 Score=32.13 Aligned_cols=26 Identities=27% Similarity=0.770 Sum_probs=19.8
Q ss_pred ccHHHHHHHHhCCCCCccccccccceEEE
Q 016892 346 MCGECAKELRLQSNKCPICRQPIEELIEI 374 (381)
Q Consensus 346 fC~~Ca~~l~~~s~~CPiCR~~I~~~i~I 374 (381)
||+.|-..-. ..||+|.+.|+....+
T Consensus 30 fcskcgeati---~qcp~csasirgd~~v 55 (160)
T COG4306 30 FCSKCGEATI---TQCPICSASIRGDYYV 55 (160)
T ss_pred HHhhhchHHH---hcCCccCCccccccee
Confidence 8999977632 2799999999875443
No 137
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=39.33 E-value=29 Score=40.09 Aligned_cols=48 Identities=21% Similarity=0.502 Sum_probs=33.0
Q ss_pred CCCcceecccCCcCe----EEeCC---CCccccHHHHHHH-HhCCCCCccccccccc
Q 016892 322 PGKECVICMTEPKDT----AVLPC---RHMCMCGECAKEL-RLQSNKCPICRQPIEE 370 (381)
Q Consensus 322 ~~~~CvICl~~~~d~----vlLPC---gH~cfC~~Ca~~l-~~~s~~CPiCR~~I~~ 370 (381)
....|.||-++.-.+ .+.-| +-- .|..|++-= ...+..||.|++...+
T Consensus 14 ~~~~c~iCGd~vg~~~~Ge~FVAC~eC~fp-vCr~cyeye~~~g~~~cp~c~t~y~~ 69 (1044)
T PLN02915 14 DAKTCRVCGDEVGVKEDGQPFVACHVCGFP-VCKPCYEYERSEGNQCCPQCNTRYKR 69 (1044)
T ss_pred CcchhhccccccCcCCCCCEEEEeccCCCc-cccchhhhhhhcCCccCCccCCchhh
Confidence 567899998864222 34444 444 899999763 3455679999988774
No 138
>KOG4462 consensus WASP-interacting protein VRP1/WIP, contains WH2 domain [Cytoskeleton]
Probab=39.23 E-value=2.7e+02 Score=28.75 Aligned_cols=16 Identities=13% Similarity=-0.043 Sum_probs=9.2
Q ss_pred eeeeccCCceeEEEcC
Q 016892 140 NDVNVHKHTLKIEVDE 155 (381)
Q Consensus 140 n~VNlrK~SLrl~~~~ 155 (381)
...|=.++|+.++-|.
T Consensus 376 s~~~g~~~t~t~~dd~ 391 (437)
T KOG4462|consen 376 SYRPGQRPTRTSADDD 391 (437)
T ss_pred ccCCCCCCcccccccc
Confidence 4556667777644333
No 139
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=38.61 E-value=22 Score=34.67 Aligned_cols=32 Identities=19% Similarity=0.293 Sum_probs=29.0
Q ss_pred CCCCcceecccCCcCeEEeCCCCccccHHHHHH
Q 016892 321 DPGKECVICMTEPKDTAVLPCRHMCMCGECAKE 353 (381)
Q Consensus 321 ~~~~~CvICl~~~~d~vlLPCgH~cfC~~Ca~~ 353 (381)
..-..|..|+.-.+|.++.+=||+ ||.+|+-+
T Consensus 41 K~FdcCsLtLqPc~dPvit~~Gyl-fdrEaILe 72 (303)
T KOG3039|consen 41 KPFDCCSLTLQPCRDPVITPDGYL-FDREAILE 72 (303)
T ss_pred CCcceeeeecccccCCccCCCCee-eeHHHHHH
Confidence 455689999999999999999999 99999876
No 140
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=38.11 E-value=29 Score=38.79 Aligned_cols=42 Identities=26% Similarity=0.546 Sum_probs=28.4
Q ss_pred CCcceecccCC-------cCeEEeCCCCccccHHHHHHHHhCCCCCccccc
Q 016892 323 GKECVICMTEP-------KDTAVLPCRHMCMCGECAKELRLQSNKCPICRQ 366 (381)
Q Consensus 323 ~~~CvICl~~~-------~d~vlLPCgH~cfC~~Ca~~l~~~s~~CPiCR~ 366 (381)
+..|..|++-. -+.+++-|||+ |...|...-..++. |-+|..
T Consensus 784 e~rc~~c~~~~l~~~~~~~~~~v~~c~h~-yhk~c~~~~~~~~~-~~~~~~ 832 (846)
T KOG2066|consen 784 EERCSSCFEPNLPSGAAFDSVVVFHCGHM-YHKECLMMESLRNA-CNIESG 832 (846)
T ss_pred hhhhhhhcccccccCcccceeeEEEccch-hhhcccccHHHhcc-cChhhc
Confidence 34899998743 45567899999 99999876332222 655543
No 141
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=38.00 E-value=27 Score=28.08 Aligned_cols=48 Identities=23% Similarity=0.576 Sum_probs=19.0
Q ss_pred CCCcceecccCCcCe----EEeC---CCCccccHHHHHH-HHhCCCCCccccccccc
Q 016892 322 PGKECVICMTEPKDT----AVLP---CRHMCMCGECAKE-LRLQSNKCPICRQPIEE 370 (381)
Q Consensus 322 ~~~~CvICl~~~~d~----vlLP---CgH~cfC~~Ca~~-l~~~s~~CPiCR~~I~~ 370 (381)
+...|.||-+..-.+ +|.- |+-- .|..|..- .+..+..||.|++...+
T Consensus 8 ~~qiCqiCGD~VGl~~~Ge~FVAC~eC~fP-vCr~CyEYErkeg~q~CpqCkt~ykr 63 (80)
T PF14569_consen 8 NGQICQICGDDVGLTENGEVFVACHECAFP-VCRPCYEYERKEGNQVCPQCKTRYKR 63 (80)
T ss_dssp SS-B-SSS--B--B-SSSSB--S-SSS------HHHHHHHHHTS-SB-TTT--B---
T ss_pred CCcccccccCccccCCCCCEEEEEcccCCc-cchhHHHHHhhcCcccccccCCCccc
Confidence 466899997754211 3444 4555 79999887 44455679999987654
No 142
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=37.85 E-value=30 Score=24.36 Aligned_cols=38 Identities=24% Similarity=0.565 Sum_probs=17.5
Q ss_pred ceecccCCcCeEEeC---CCCccccHHHHHHHHhCCC--CCccc
Q 016892 326 CVICMTEPKDTAVLP---CRHMCMCGECAKELRLQSN--KCPIC 364 (381)
Q Consensus 326 CvICl~~~~d~vlLP---CgH~cfC~~Ca~~l~~~s~--~CPiC 364 (381)
|.+|.+.....+.=+ |+=. +...|++..+.... +||.|
T Consensus 1 C~~C~~iv~~G~~C~~~~C~~r-~H~~C~~~y~r~~~~~~CP~C 43 (43)
T PF08746_consen 1 CEACKEIVTQGQRCSNRDCNVR-LHDDCFKKYFRHRSNPKCPNC 43 (43)
T ss_dssp -TTT-SB-SSSEE-SS--S--E-E-HHHHHHHTTT-SS-B-TTT
T ss_pred CcccchhHeeeccCCCCccCch-HHHHHHHHHHhcCCCCCCcCC
Confidence 444554443333322 5555 78899998554333 69987
No 143
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=35.89 E-value=22 Score=39.66 Aligned_cols=37 Identities=24% Similarity=0.554 Sum_probs=26.8
Q ss_pred cceecccCCcCe--EEeCCCCccccHHHHHHHHhCCCCCc
Q 016892 325 ECVICMTEPKDT--AVLPCRHMCMCGECAKELRLQSNKCP 362 (381)
Q Consensus 325 ~CvICl~~~~d~--vlLPCgH~cfC~~Ca~~l~~~s~~CP 362 (381)
.|.||--..+.. +..-|+|+ +..+|+..|......||
T Consensus 1030 ~C~~C~l~V~gss~~Cg~C~Hv-~H~sc~~eWf~~gd~Cp 1068 (1081)
T KOG0309|consen 1030 QCAICHLAVRGSSNFCGTCGHV-GHTSCMMEWFRTGDVCP 1068 (1081)
T ss_pred eeeeEeeEeeccchhhcccccc-ccHHHHHHHHhcCCcCC
Confidence 455554433222 33579999 99999999998888887
No 144
>PF10764 Gin: Inhibitor of sigma-G Gin; InterPro: IPR019700 Gin allows sigma-F to delay late forespore transcription by preventing sigma-G to take over before the cell has reached a critical stage of development. Gin is also known as CsfB [].
Probab=35.85 E-value=39 Score=24.33 Aligned_cols=31 Identities=26% Similarity=0.669 Sum_probs=24.3
Q ss_pred cceecccCCcCeEEeCCCCccccHHHHHHHHhC
Q 016892 325 ECVICMTEPKDTAVLPCRHMCMCGECAKELRLQ 357 (381)
Q Consensus 325 ~CvICl~~~~d~vlLPCgH~cfC~~Ca~~l~~~ 357 (381)
.|.||-....+.+. =.++. +|.+|-+.+.+.
T Consensus 1 ~CiiC~~~~~~GI~-I~~~f-IC~~CE~~iv~~ 31 (46)
T PF10764_consen 1 KCIICGKEKEEGIH-IYGKF-ICSDCEKEIVNT 31 (46)
T ss_pred CeEeCCCcCCCCEE-EECeE-ehHHHHHHhccC
Confidence 49999988887644 36888 999999998653
No 145
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=35.77 E-value=3.6 Score=40.14 Aligned_cols=45 Identities=36% Similarity=0.651 Sum_probs=34.0
Q ss_pred CCCcceecccCCc------CeEEeC--------CCCccccHHHHHHHHhCC-CCCcccccc
Q 016892 322 PGKECVICMTEPK------DTAVLP--------CRHMCMCGECAKELRLQS-NKCPICRQP 367 (381)
Q Consensus 322 ~~~~CvICl~~~~------d~vlLP--------CgH~cfC~~Ca~~l~~~s-~~CPiCR~~ 367 (381)
...+|-||..... ...++. |+|. .|..|+.....+. ..||.||..
T Consensus 206 ~~~~c~ic~~~~~~n~~~~~p~vl~~~~~~~~~c~ht-lc~~c~~~~l~~~~~~cp~~~~~ 265 (296)
T KOG4185|consen 206 IEKLCEICERIYSENDEKLAPLVLSLSRLKEKIEGHT-LCKECIDTILLQAGIKCPFCTWS 265 (296)
T ss_pred HHHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHH-HHhcchHHHHHHhhhcCCcccce
Confidence 4578999986554 224556 9999 9999999976654 479999864
No 146
>PHA03378 EBNA-3B; Provisional
Probab=33.26 E-value=4.8e+02 Score=29.36 Aligned_cols=17 Identities=29% Similarity=0.448 Sum_probs=6.7
Q ss_pred hhcCCchhhhHHHhhCC
Q 016892 294 LWVDGVRYELREIYGIG 310 (381)
Q Consensus 294 l~v~g~~~el~ei~g~~ 310 (381)
|..+|...+-+...|.+
T Consensus 959 l~~g~~~~~~~~~~g~~ 975 (991)
T PHA03378 959 LECGGTTKQERAMLGTG 975 (991)
T ss_pred hhcCCcchhhhhccccC
Confidence 33334333334444443
No 147
>COG5178 PRP8 U5 snRNP spliceosome subunit [RNA processing and modification]
Probab=32.02 E-value=31 Score=40.43 Aligned_cols=7 Identities=71% Similarity=1.341 Sum_probs=2.9
Q ss_pred CCCCCcc
Q 016892 124 GPPPPYV 130 (381)
Q Consensus 124 ~~~~~~v 130 (381)
+||+|-+
T Consensus 26 pPppPg~ 32 (2365)
T COG5178 26 PPPPPGV 32 (2365)
T ss_pred CccCCCc
Confidence 4444433
No 148
>TIGR00622 ssl1 transcription factor ssl1. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=31.31 E-value=41 Score=28.88 Aligned_cols=42 Identities=19% Similarity=0.505 Sum_probs=30.8
Q ss_pred CCcceecccCCcCeE--------------EeCCCCccccHHHHHHHHhCCCCCcccc
Q 016892 323 GKECVICMTEPKDTA--------------VLPCRHMCMCGECAKELRLQSNKCPICR 365 (381)
Q Consensus 323 ~~~CvICl~~~~d~v--------------lLPCgH~cfC~~Ca~~l~~~s~~CPiCR 365 (381)
...|.-|+..+.+.. ---|.+. ||.+|..-+...-..||-|.
T Consensus 55 ~~~C~~C~~~f~~~~~~~~~~~~~~~~y~C~~C~~~-FC~dCD~fiHe~Lh~CPGC~ 110 (112)
T TIGR00622 55 SRFCFGCQGPFPKPPVSPFDELKDSHRYVCAVCKNV-FCVDCDVFVHESLHCCPGCI 110 (112)
T ss_pred CCcccCcCCCCCCcccccccccccccceeCCCCCCc-cccccchhhhhhccCCcCCC
Confidence 346888887654321 2248888 99999887777778899995
No 149
>KOG2231 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=30.90 E-value=4.8 Score=44.15 Aligned_cols=50 Identities=22% Similarity=0.592 Sum_probs=35.4
Q ss_pred CCCCCcceecccCC-cCeEEeCCCCccccHHHHHHHH--hCCCCCccccccccce
Q 016892 320 SDPGKECVICMTEP-KDTAVLPCRHMCMCGECAKELR--LQSNKCPICRQPIEEL 371 (381)
Q Consensus 320 ~~~~~~CvICl~~~-~d~vlLPCgH~cfC~~Ca~~l~--~~s~~CPiCR~~I~~~ 371 (381)
.+.+..|+||+.+. .-..+..|.|. +|..|..... .....|.+| ..+..+
T Consensus 75 ~~~e~~~~if~~d~~~y~~~~~~~~~-~C~~C~~~~~~~~~~~~~~~c-~~~~s~ 127 (669)
T KOG2231|consen 75 DEHEDTCVIFFADKLTYTKLEACLHH-SCHICDRRFRALYNKKECLHC-TEFKSV 127 (669)
T ss_pred ccccceeeeeeccccHHHHHHHHHhh-hcCccccchhhhcccCCCccc-cchhHH
Confidence 35677999995554 44455689998 9999998753 355679999 665443
No 150
>smart00557 IG_FLMN Filamin-type immunoglobulin domains. These form a rod-like structure in the actin-binding cytoskeleton protein, filamin. The C-terminal repeats of filamin bind beta1-integrin (CD29).
Probab=30.29 E-value=1e+02 Score=24.58 Aligned_cols=41 Identities=22% Similarity=0.275 Sum_probs=28.4
Q ss_pred eeEEEcCCCCceeceEEeeeccccceEEEEEeeecCCCCCc
Q 016892 149 LKIEVDEENPDHVLVSFVFDALFDGSITVFYFAKEEPNCKF 189 (381)
Q Consensus 149 Lrl~~~~~~p~~y~v~FtFDa~~~~sItI~f~a~E~~~~~~ 189 (381)
+.+...+..-|.|.|+|+-...-...|.|.|..+.-.++-|
T Consensus 46 ~~~~v~d~~dGty~v~y~P~~~G~~~i~V~~~g~~I~gSPF 86 (93)
T smart00557 46 VPVEVKDNGDGTYTVSYTPTEPGDYTVTVKFGGEHIPGSPF 86 (93)
T ss_pred eEeEEEeCCCCEEEEEEEeCCCEeEEEEEEECCEECCCCCE
Confidence 44433333337899999999999999999996655554433
No 151
>KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only]
Probab=30.13 E-value=40 Score=39.13 Aligned_cols=17 Identities=18% Similarity=0.403 Sum_probs=12.9
Q ss_pred CCCCCCcceecccCCcC
Q 016892 319 DSDPGKECVICMTEPKD 335 (381)
Q Consensus 319 ~~~~~~~CvICl~~~~d 335 (381)
..+.+..|+||++....
T Consensus 215 ~~~~D~~C~iC~~~~~~ 231 (1051)
T KOG0955|consen 215 LLEEDAVCCICLDGECQ 231 (1051)
T ss_pred ccCCCccceeecccccC
Confidence 34567899999987654
No 152
>PF07975 C1_4: TFIIH C1-like domain; InterPro: IPR004595 All proteins in this domain for which functions are known are components of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. It includes the yeast transcription factor Ssl1 (Suppressor of stem-loop protein 1) that is essential for translation initiation and affects UV resistance. The C-terminal region is essential for transcription activity. This regions binds three zinc atoms through two independent domain. The first contains a C4 zinc finger motif, whereas the second is characterised by a CX(2)CX(2-4)FCADCD motif. The solution structure of the second C-terminal domain revealed homology with the regulatory domain of protein kinase C [].; GO: 0006281 DNA repair, 0005634 nucleus; PDB: 1Z60_A.
Probab=30.12 E-value=29 Score=25.65 Aligned_cols=25 Identities=24% Similarity=0.765 Sum_probs=16.2
Q ss_pred CCCCccccHHHHHHHHhCCCCCcccc
Q 016892 340 PCRHMCMCGECAKELRLQSNKCPICR 365 (381)
Q Consensus 340 PCgH~cfC~~Ca~~l~~~s~~CPiCR 365 (381)
-|++. ||.+|-.-+..+-..||-|-
T Consensus 26 ~C~~~-FC~dCD~fiHE~LH~CPGC~ 50 (51)
T PF07975_consen 26 KCKNH-FCIDCDVFIHETLHNCPGCE 50 (51)
T ss_dssp TTT---B-HHHHHTTTTTS-SSSTT-
T ss_pred CCCCc-cccCcChhhhccccCCcCCC
Confidence 48888 99999776666667899984
No 153
>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=29.62 E-value=43 Score=25.30 Aligned_cols=22 Identities=27% Similarity=0.874 Sum_probs=18.1
Q ss_pred ccHHHHHHHHhCCCCCcccccccc
Q 016892 346 MCGECAKELRLQSNKCPICRQPIE 369 (381)
Q Consensus 346 fC~~Ca~~l~~~s~~CPiCR~~I~ 369 (381)
||..|+..++ .+.||-|-..+.
T Consensus 31 FC~~C~e~~l--~~~CPNCgGelv 52 (57)
T PF06906_consen 31 FCADCAETML--NGVCPNCGGELV 52 (57)
T ss_pred ccHHHHHHHh--cCcCcCCCCccc
Confidence 9999999976 468999977654
No 154
>KOG4672 consensus Uncharacterized conserved low complexity protein [Function unknown]
Probab=29.32 E-value=4e+02 Score=28.01 Aligned_cols=10 Identities=20% Similarity=0.547 Sum_probs=5.0
Q ss_pred CCCCCccccc
Q 016892 124 GPPPPYVDHQ 133 (381)
Q Consensus 124 ~~~~~~v~~q 133 (381)
+++..+..++
T Consensus 384 p~p~~f~~pp 393 (487)
T KOG4672|consen 384 PPPSSFQAPP 393 (487)
T ss_pred CCCccccCch
Confidence 4444455555
No 155
>PF09229 Aha1_N: Activator of Hsp90 ATPase, N-terminal; InterPro: IPR015310 This domain is predominantly found in the protein 'Activator of Hsp90 ATPase', it adopts a secondary structure consisting of an N-terminal alpha-helix leading into a four-stranded meandering antiparallel beta-sheet, followed by a C-terminal alpha-helix. The two helices are packed together, with the beta-sheet curving around them. They bind to the molecular chaperone HSP82 and stimulate its ATPase activity []. ; GO: 0001671 ATPase activator activity, 0051087 chaperone binding, 0005737 cytoplasm; PDB: 1USV_F 1USU_B 3N72_A.
Probab=29.10 E-value=1.2e+02 Score=26.29 Aligned_cols=39 Identities=18% Similarity=0.311 Sum_probs=27.4
Q ss_pred eeeeccCCceeEEEcCCCCceeceEEeeecc--------ccceEEEEEeeecC
Q 016892 140 NDVNVHKHTLKIEVDEENPDHVLVSFVFDAL--------FDGSITVFYFAKEE 184 (381)
Q Consensus 140 n~VNlrK~SLrl~~~~~~p~~y~v~FtFDa~--------~~~sItI~f~a~E~ 184 (381)
..||+||..+++.=| |.|++.|.+. +.|+|+|-.++.|+
T Consensus 41 A~v~~rKGK~i~~fd------~~i~l~w~~~~~~~~~~~~~G~i~ipe~s~d~ 87 (137)
T PF09229_consen 41 ASVNQRKGKKIFIFD------LKIKLKWEGKLKDGEEKEVKGTIEIPEFSSDN 87 (137)
T ss_dssp EEEEEETTCEEEEEE------EEEEEEEEEEECTTSSEEEEEEEEEEEEECCC
T ss_pred EEEEEEcCcEEEEEE------EEEEEEEEEEEcCCCCcEEEEEEEecccCCCC
Confidence 568889998877653 4555555544 56788888888874
No 156
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=28.38 E-value=5.5 Score=40.91 Aligned_cols=48 Identities=19% Similarity=0.337 Sum_probs=38.4
Q ss_pred CCCcceecccCCc----CeEEeCCCCccccHHHHHHHHhCCCCCccccccccc
Q 016892 322 PGKECVICMTEPK----DTAVLPCRHMCMCGECAKELRLQSNKCPICRQPIEE 370 (381)
Q Consensus 322 ~~~~CvICl~~~~----d~vlLPCgH~cfC~~Ca~~l~~~s~~CPiCR~~I~~ 370 (381)
-...|+||+...+ .+--+-|||. ...+|+..|.....+|+.||..+..
T Consensus 195 lv~sl~I~~~slK~~y~k~~~~~~g~~-~~~~kL~k~L~~~~kl~~~~rel~~ 246 (465)
T KOG0827|consen 195 LVGSLSICFESLKQNYDKISAIVCGHI-YHHGKLSKWLATKRKLPSCRRELPK 246 (465)
T ss_pred HHhhhHhhHHHHHHHHHHHHHHhhccc-chhhHHHHHHHHHHHhHHHHhhhhh
Confidence 3568999987543 3344579999 9999999999888899999998764
No 157
>PF10813 DUF2733: Protein of unknown function (DUF2733); InterPro: IPR024360 The UL11 gene product of herpes simplex virus is a membrane-associated tegument protein that is incorporated into the HSV virion and functions in viral envelopment []. UL11 is acylated, which is crucial for lipid raft association [].
Probab=27.46 E-value=27 Score=23.42 Aligned_cols=12 Identities=50% Similarity=0.651 Sum_probs=8.8
Q ss_pred CCCcccc-ccccC
Q 016892 1 MGISWSN-RRRNN 12 (381)
Q Consensus 1 ~~~~~~~-~~~~~ 12 (381)
||+++|= |||+|
T Consensus 1 MG~~~s~Ckrr~n 13 (32)
T PF10813_consen 1 MGSLLSMCKRRHN 13 (32)
T ss_pred CcceeeeeeccCC
Confidence 8888887 66654
No 158
>PF04423 Rad50_zn_hook: Rad50 zinc hook motif; InterPro: IPR007517 The Mre11 complex (Mre11 Rad50 Nbs1) is central to chromosomal maintenance and functions in homologous recombination, telomere maintenance and sister chromatid association. The Rad50 coiled-coil region contains a dimer interface at the apex of the coiled coils in which pairs of conserved Cys-X-X-Cys motifs form interlocking hooks that bind one Zn ion. This alignment includes the zinc hook motif and a short stretch of coiled-coil on either side.; GO: 0004518 nuclease activity, 0005524 ATP binding, 0008270 zinc ion binding, 0006281 DNA repair; PDB: 1L8D_B.
Probab=26.04 E-value=22 Score=25.90 Aligned_cols=12 Identities=42% Similarity=1.337 Sum_probs=6.2
Q ss_pred CCCccccccccc
Q 016892 359 NKCPICRQPIEE 370 (381)
Q Consensus 359 ~~CPiCR~~I~~ 370 (381)
..||+|.+.+..
T Consensus 21 ~~CPlC~r~l~~ 32 (54)
T PF04423_consen 21 GCCPLCGRPLDE 32 (54)
T ss_dssp EE-TTT--EE-H
T ss_pred CcCCCCCCCCCH
Confidence 489999988764
No 159
>COG5178 PRP8 U5 snRNP spliceosome subunit [RNA processing and modification]
Probab=25.23 E-value=64 Score=38.01 Aligned_cols=19 Identities=21% Similarity=0.099 Sum_probs=11.4
Q ss_pred EeeeccccceEEEEEeeec
Q 016892 165 FVFDALFDGSITVFYFAKE 183 (381)
Q Consensus 165 FtFDa~~~~sItI~f~a~E 183 (381)
.+|--+++|+|.=.|||.=
T Consensus 149 itfvne~prviep~~~aqw 167 (2365)
T COG5178 149 ITFVNEVPRVIEPQLFAQW 167 (2365)
T ss_pred EEEeecCccccCcceeeeh
Confidence 4455566666666666653
No 160
>PF13240 zinc_ribbon_2: zinc-ribbon domain
Probab=24.75 E-value=13 Score=22.79 Aligned_cols=21 Identities=33% Similarity=0.937 Sum_probs=11.2
Q ss_pred cHHHHHHHHhCCCCCcccccc
Q 016892 347 CGECAKELRLQSNKCPICRQP 367 (381)
Q Consensus 347 C~~Ca~~l~~~s~~CPiCR~~ 367 (381)
|..|-..+......|+.|-..
T Consensus 2 Cp~CG~~~~~~~~fC~~CG~~ 22 (23)
T PF13240_consen 2 CPNCGAEIEDDAKFCPNCGTP 22 (23)
T ss_pred CcccCCCCCCcCcchhhhCCc
Confidence 444555454445556666544
No 161
>COG3813 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.58 E-value=48 Score=26.36 Aligned_cols=24 Identities=25% Similarity=0.699 Sum_probs=17.9
Q ss_pred CccccHHHHHHHHhCCCCCcccccccc
Q 016892 343 HMCMCGECAKELRLQSNKCPICRQPIE 369 (381)
Q Consensus 343 H~cfC~~Ca~~l~~~s~~CPiCR~~I~ 369 (381)
|. ||.+|+...+ ...||-|-..+.
T Consensus 29 cT-FCadCae~~l--~g~CPnCGGelv 52 (84)
T COG3813 29 CT-FCADCAENRL--HGLCPNCGGELV 52 (84)
T ss_pred ee-hhHhHHHHhh--cCcCCCCCchhh
Confidence 55 9999999644 468999966543
No 162
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=24.25 E-value=57 Score=32.97 Aligned_cols=42 Identities=24% Similarity=0.483 Sum_probs=28.6
Q ss_pred CcceecccC---CcCeEEeCCCCccccHHHHHHHHhCC---CCCccccc
Q 016892 324 KECVICMTE---PKDTAVLPCRHMCMCGECAKELRLQS---NKCPICRQ 366 (381)
Q Consensus 324 ~~CvICl~~---~~d~vlLPCgH~cfC~~Ca~~l~~~s---~~CPiCR~ 366 (381)
..|.|=-+. .--.+.|.|||+ .-.+-++.+.+.. -+||.|-.
T Consensus 337 FiCPVlKe~~t~ENpP~ml~CgHV-Iskeal~~LS~nG~~~FKCPYCP~ 384 (396)
T COG5109 337 FICPVLKELCTDENPPVMLECGHV-ISKEALSVLSQNGVLSFKCPYCPE 384 (396)
T ss_pred eeccccHhhhcccCCCeeeeccce-eeHHHHHHHhhcCcEEeeCCCCCc
Confidence 356663332 233578899999 8888888877643 47999943
No 163
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=23.90 E-value=26 Score=36.25 Aligned_cols=38 Identities=24% Similarity=0.538 Sum_probs=0.0
Q ss_pred cCeEEeCCCCccccHHHHHHHHh------CCCCCccccccccceEEEEc
Q 016892 334 KDTAVLPCRHMCMCGECAKELRL------QSNKCPICRQPIEELIEIKI 376 (381)
Q Consensus 334 ~d~vlLPCgH~cfC~~Ca~~l~~------~s~~CPiCR~~I~~~i~I~i 376 (381)
+-.++|.|||+ .= ...|.. +...||+||+ +..++.+.+
T Consensus 302 qP~VYl~CGHV-hG---~h~Wg~~~~~~~~~r~CPlCr~-~g~~V~L~m 345 (416)
T PF04710_consen 302 QPWVYLNCGHV-HG---YHNWGQDSDRDPRSRTCPLCRQ-VGPYVPLWM 345 (416)
T ss_dssp -------------------------------------------------
T ss_pred Cceeeccccce-ee---ecccccccccccccccCCCccc-cCCceeEee
Confidence 44578899998 21 223422 2457999987 444444433
No 164
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.51 E-value=43 Score=37.97 Aligned_cols=33 Identities=24% Similarity=0.521 Sum_probs=25.1
Q ss_pred CCCCcceecccCCc--CeEEeCCCCccccHHHHHHH
Q 016892 321 DPGKECVICMTEPK--DTAVLPCRHMCMCGECAKEL 354 (381)
Q Consensus 321 ~~~~~CvICl~~~~--d~vlLPCgH~cfC~~Ca~~l 354 (381)
+-+..|-+|..-.- --.+.+|||. |.++|+.+.
T Consensus 815 ep~d~C~~C~~~ll~~pF~vf~CgH~-FH~~Cl~~~ 849 (911)
T KOG2034|consen 815 EPQDSCDHCGRPLLIKPFYVFPCGHC-FHRDCLIRH 849 (911)
T ss_pred cCccchHHhcchhhcCcceeeeccch-HHHHHHHHH
Confidence 45679999987553 3355699999 999998763
No 165
>PF02318 FYVE_2: FYVE-type zinc finger; InterPro: IPR003315 This entry represents the zinc-binding domain found in rabphilin Rab3A. The small G protein Rab3A plays an important role in the regulation of neurotransmitter release. The crystal structure of the small G protein Rab3A complexed with the effector domain of rabphilin-3A shows that the effector domain of rabphilin-3A contacts Rab3A in two distinct areas. The first interface involves the Rab3A switch I and switch II regions, which are sensitive to the nucleotide-binding state of Rab3A. The second interface consists of a deep pocket in Rab3A that interacts with a SGAWFF structural element of rabphilin-3A. Sequence and structure analysis, and biochemical data suggest that this pocket, or Rab complementarity-determining region (RabCDR), establishes a specific interaction between each Rab protein and its effectors. It has been suggested that RabCDRs could be major determinants of effector specificity during vesicle trafficking and fusion [].; GO: 0008270 zinc ion binding, 0017137 Rab GTPase binding, 0006886 intracellular protein transport; PDB: 2CSZ_A 2ZET_C 1ZBD_B 3BC1_B 2CJS_C 2A20_A.
Probab=21.97 E-value=84 Score=26.66 Aligned_cols=44 Identities=18% Similarity=0.591 Sum_probs=26.6
Q ss_pred CCCcceecccCC-----cCeEEeCCCCccccHHHHHHHHhC-CCCCccccc
Q 016892 322 PGKECVICMTEP-----KDTAVLPCRHMCMCGECAKELRLQ-SNKCPICRQ 366 (381)
Q Consensus 322 ~~~~CvICl~~~-----~d~vlLPCgH~cfC~~Ca~~l~~~-s~~CPiCR~ 366 (381)
+...|.+|...+ ...+-.-|+|. +|..|....... .-.|-+|+.
T Consensus 53 ~~~~C~~C~~~fg~l~~~~~~C~~C~~~-VC~~C~~~~~~~~~WlC~vC~k 102 (118)
T PF02318_consen 53 GERHCARCGKPFGFLFNRGRVCVDCKHR-VCKKCGVYSKKEPIWLCKVCQK 102 (118)
T ss_dssp CCSB-TTTS-BCSCTSTTCEEETTTTEE-EETTSEEETSSSCCEEEHHHHH
T ss_pred CCcchhhhCCcccccCCCCCcCCcCCcc-ccCccCCcCCCCCCEEChhhHH
Confidence 456999998754 23345569998 999996541111 114888865
No 166
>PF10083 DUF2321: Uncharacterized protein conserved in bacteria (DUF2321); InterPro: IPR016891 This entry is represented by Bacteriophage 'Lactobacillus prophage Lj928', Orf-Ljo1454. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=21.48 E-value=52 Score=29.87 Aligned_cols=28 Identities=29% Similarity=0.745 Sum_probs=21.8
Q ss_pred CCccccHHHHHHHHhCCCCCccccccccceEE
Q 016892 342 RHMCMCGECAKELRLQSNKCPICRQPIEELIE 373 (381)
Q Consensus 342 gH~cfC~~Ca~~l~~~s~~CPiCR~~I~~~i~ 373 (381)
++. ||..|-.+.. ..||.|..+|+....
T Consensus 27 ~~~-fC~kCG~~tI---~~Cp~C~~~IrG~y~ 54 (158)
T PF10083_consen 27 REK-FCSKCGAKTI---TSCPNCSTPIRGDYH 54 (158)
T ss_pred HHH-HHHHhhHHHH---HHCcCCCCCCCCcee
Confidence 345 9999988854 389999999987543
No 167
>COG3058 FdhE Uncharacterized protein involved in formate dehydrogenase formation [Posttranslational modification, protein turnover, chaperones]
Probab=21.15 E-value=1.1e+02 Score=30.36 Aligned_cols=64 Identities=25% Similarity=0.405 Sum_probs=42.4
Q ss_pred chhhhHHHhhCCCCCCCCCCCCCCCCcceecccCCcCeEEeCC------CCccccHHHHHHHHhCCCCCccccc
Q 016892 299 VRYELREIYGIGNSAAEGFEDSDPGKECVICMTEPKDTAVLPC------RHMCMCGECAKELRLQSNKCPICRQ 366 (381)
Q Consensus 299 ~~~el~ei~g~~~s~~~~~~~~~~~~~CvICl~~~~d~vlLPC------gH~cfC~~Ca~~l~~~s~~CPiCR~ 366 (381)
..|-++...++..+...+. +....|.||-+.+...++.-= |-+ -|+-|+..|..--.+|--|-+
T Consensus 164 ~lyw~q~a~~i~~~~~~e~---e~~~~CPvCGS~PvaSmV~~g~~~~GlRYL-~CslC~teW~~VR~KC~nC~~ 233 (308)
T COG3058 164 SLYWAQMAQGIPGKARVEN---ESRQYCPVCGSMPVASMVQIGETEQGLRYL-HCSLCETEWHYVRVKCSNCEQ 233 (308)
T ss_pred HHHHHHHHhcCCccccccc---cccccCCCcCCCCcceeeeecCccccchhh-hhhhHHHHHHHHHHHhccccc
Confidence 3455555566655443222 456799999999877765432 223 599999999776667888855
No 168
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=20.61 E-value=5.5 Score=31.35 Aligned_cols=42 Identities=33% Similarity=0.741 Sum_probs=22.1
Q ss_pred CcceecccCCcCeEEeCCCCccccHHHHHHHHhCCCCCccccccccce
Q 016892 324 KECVICMTEPKDTAVLPCRHMCMCGECAKELRLQSNKCPICRQPIEEL 371 (381)
Q Consensus 324 ~~CvICl~~~~d~vlLPCgH~cfC~~Ca~~l~~~s~~CPiCR~~I~~~ 371 (381)
..|..|.......- +|. .|..|..... ....||-|.++++.+
T Consensus 2 ~~CP~C~~~L~~~~----~~~-~C~~C~~~~~-~~a~CPdC~~~Le~L 43 (70)
T PF07191_consen 2 NTCPKCQQELEWQG----GHY-HCEACQKDYK-KEAFCPDCGQPLEVL 43 (70)
T ss_dssp -B-SSS-SBEEEET----TEE-EETTT--EEE-EEEE-TTT-SB-EEE
T ss_pred CcCCCCCCccEEeC----CEE-ECccccccce-ecccCCCcccHHHHH
Confidence 46888887643332 666 8999987633 235799998887754
No 169
>KOG1925 consensus Rac1 GTPase effector FHOS [Signal transduction mechanisms; Cytoskeleton]
Probab=20.56 E-value=1.3e+02 Score=32.46 Aligned_cols=38 Identities=26% Similarity=0.530 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCC-----------CCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCcC
Q 016892 38 LYAATNPPPPPA-----------PHPYHPPHAPYPVPPPQPPPQAPVNPYYYHSHGYNSCGYPNPMMGRFS 97 (381)
Q Consensus 38 ~~~~~~p~p~p~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (381)
+....+++|++| ..|++|+-++.+||||+ +++.|.+.+
T Consensus 225 ~~~~~P~~P~~P~~~P~~~~L~~GvPPPPP~G~~PPPPP~----------------------~~~L~~~v~ 273 (817)
T KOG1925|consen 225 PEPKEPLIPASPKELPTRDFLLSGVPPPPPKGPFPPPPPL----------------------AAPLPHSVP 273 (817)
T ss_pred CCCCCCCCCCChhccCCchhhhcCCCCCCCCCCCCCCCCC----------------------cccCcCCCC
No 170
>KOG0006 consensus E3 ubiquitin-protein ligase (Parkin protein) [Posttranslational modification, protein turnover, chaperones]
Probab=20.51 E-value=83 Score=31.87 Aligned_cols=33 Identities=21% Similarity=0.626 Sum_probs=28.0
Q ss_pred CCCCCcceecccCCcCeEEeCCC--CccccHHHHHH
Q 016892 320 SDPGKECVICMTEPKDTAVLPCR--HMCMCGECAKE 353 (381)
Q Consensus 320 ~~~~~~CvICl~~~~d~vlLPCg--H~cfC~~Ca~~ 353 (381)
......|..|-+....+++++|. |+ .|.+|.+.
T Consensus 218 N~~ni~C~~Ctdv~~~vlvf~Cns~Hv-tC~dCFr~ 252 (446)
T KOG0006|consen 218 NSRNITCITCTDVRSPVLVFQCNSRHV-TCLDCFRL 252 (446)
T ss_pred ccccceeEEecCCccceEEEecCCcee-ehHHhhhh
Confidence 34567999999998888889998 99 99999774
No 171
>KOG0956 consensus PHD finger protein AF10 [General function prediction only]
Probab=20.35 E-value=72 Score=35.45 Aligned_cols=27 Identities=22% Similarity=0.726 Sum_probs=16.6
Q ss_pred eCCCCccccHHHHHHHHhCCCCCccccc
Q 016892 339 LPCRHMCMCGECAKELRLQSNKCPICRQ 366 (381)
Q Consensus 339 LPCgH~cfC~~Ca~~l~~~s~~CPiCR~ 366 (381)
+|-|-+ ||..|..+-+.---+|-+|--
T Consensus 44 VPtGpW-fCrKCesqeraarvrCeLCP~ 70 (900)
T KOG0956|consen 44 VPTGPW-FCRKCESQERAARVRCELCPH 70 (900)
T ss_pred cCCCch-hhhhhhhhhhhccceeecccC
Confidence 344555 999998774433346777743
No 172
>PLN02248 cellulose synthase-like protein
Probab=20.03 E-value=69 Score=37.45 Aligned_cols=28 Identities=25% Similarity=0.795 Sum_probs=24.5
Q ss_pred CCCccccHHHHHHHHhCCCCCcccccccc
Q 016892 341 CRHMCMCGECAKELRLQSNKCPICRQPIE 369 (381)
Q Consensus 341 CgH~cfC~~Ca~~l~~~s~~CPiCR~~I~ 369 (381)
|++. .|.+|..........||-|+.+..
T Consensus 150 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 177 (1135)
T PLN02248 150 CGFK-ICRDCYIDAVKSGGICPGCKEPYK 177 (1135)
T ss_pred ccch-hHHhHhhhhhhcCCCCCCCccccc
Confidence 7888 999999998777889999988763
Done!