Query 016892
Match_columns 381
No_of_seqs 367 out of 1667
Neff 6.0
Searched_HMMs 29240
Date Mon Mar 25 05:31:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016892.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016892hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ea5_A Cell growth regulator w 99.5 1.4E-14 4.9E-19 111.1 3.9 59 318-380 10-68 (68)
2 2vje_B MDM4 protein; proto-onc 99.5 1.7E-14 5.7E-19 109.0 3.3 56 321-376 5-62 (63)
3 2vje_A E3 ubiquitin-protein li 99.5 2.8E-14 9.6E-19 108.0 3.6 55 322-376 7-63 (64)
4 4ic3_A E3 ubiquitin-protein li 99.2 3.6E-12 1.2E-16 98.8 2.4 51 322-376 23-73 (74)
5 2csy_A Zinc finger protein 183 99.2 1.4E-11 4.7E-16 96.5 5.7 54 318-372 10-63 (81)
6 2d8t_A Dactylidin, ring finger 99.2 1.1E-11 3.7E-16 94.8 4.6 52 319-371 11-62 (71)
7 2ecn_A Ring finger protein 141 99.2 6.8E-12 2.3E-16 95.3 3.1 59 318-378 10-68 (70)
8 2yho_A E3 ubiquitin-protein li 99.2 5.8E-12 2E-16 99.2 2.5 53 323-379 18-70 (79)
9 2kiz_A E3 ubiquitin-protein li 99.2 2.7E-11 9.2E-16 91.7 4.9 54 318-372 9-65 (69)
10 2djb_A Polycomb group ring fin 99.1 1.8E-11 6.2E-16 93.8 4.0 55 317-372 9-64 (72)
11 2ea6_A Ring finger protein 4; 99.1 1.6E-11 5.6E-16 92.3 3.6 52 318-370 10-68 (69)
12 2ecg_A Baculoviral IAP repeat- 99.1 1.1E-11 3.8E-16 96.1 0.9 50 323-376 25-74 (75)
13 1chc_A Equine herpes virus-1 r 99.1 2.9E-11 9.9E-16 91.2 3.2 55 321-376 3-58 (68)
14 2ysl_A Tripartite motif-contai 99.1 9.4E-11 3.2E-15 89.4 5.8 52 318-370 15-69 (73)
15 2ect_A Ring finger protein 126 99.1 5.2E-11 1.8E-15 92.2 4.1 53 318-371 10-65 (78)
16 2ep4_A Ring finger protein 24; 99.1 4.1E-11 1.4E-15 91.9 3.1 58 318-376 10-70 (74)
17 2yur_A Retinoblastoma-binding 99.1 4.1E-11 1.4E-15 92.4 2.1 53 317-370 9-64 (74)
18 2l0b_A E3 ubiquitin-protein li 99.0 9.2E-11 3.1E-15 94.2 4.1 49 321-370 38-89 (91)
19 2ecm_A Ring finger and CHY zin 99.0 8.8E-11 3E-15 84.7 3.5 47 322-369 4-54 (55)
20 2ecw_A Tripartite motif-contai 99.0 1.8E-10 6.2E-15 89.7 5.4 52 318-370 14-71 (85)
21 2ecy_A TNF receptor-associated 99.0 1.3E-10 4.4E-15 87.4 4.0 52 318-370 10-62 (66)
22 2ct2_A Tripartite motif protei 99.0 2E-10 6.7E-15 90.5 5.0 52 318-370 10-68 (88)
23 3ng2_A RNF4, snurf, ring finge 99.0 6.8E-11 2.3E-15 89.6 2.2 49 321-370 8-63 (71)
24 1iym_A EL5; ring-H2 finger, ub 99.0 1.3E-10 4.4E-15 84.0 3.3 48 321-369 3-54 (55)
25 1x4j_A Ring finger protein 38; 99.0 9.3E-11 3.2E-15 90.4 2.6 50 320-370 20-72 (75)
26 2xeu_A Ring finger protein 4; 99.0 1E-10 3.4E-15 86.6 2.7 49 322-371 2-57 (64)
27 4ayc_A E3 ubiquitin-protein li 99.0 1.6E-10 5.5E-15 99.6 4.1 49 323-372 53-101 (138)
28 2ecv_A Tripartite motif-contai 99.0 1.9E-10 6.6E-15 89.6 4.2 52 318-370 14-71 (85)
29 2egp_A Tripartite motif-contai 99.0 1.4E-10 4.9E-15 89.6 1.6 52 318-370 7-65 (79)
30 3ztg_A E3 ubiquitin-protein li 98.9 4.4E-10 1.5E-14 89.7 4.4 51 318-369 8-61 (92)
31 1t1h_A Gspef-atpub14, armadill 98.9 6.1E-10 2.1E-14 86.2 4.8 50 320-370 5-55 (78)
32 2ysj_A Tripartite motif-contai 98.9 1.1E-09 3.7E-14 81.4 5.6 46 318-364 15-63 (63)
33 2ecj_A Tripartite motif-contai 98.9 1.1E-09 3.7E-14 79.6 4.5 46 318-364 10-58 (58)
34 3t6p_A Baculoviral IAP repeat- 98.9 3.4E-10 1.2E-14 112.1 1.1 52 321-376 293-344 (345)
35 1v87_A Deltex protein 2; ring- 98.8 1.2E-09 4.2E-14 90.4 3.5 48 323-371 25-95 (114)
36 2ckl_A Polycomb group ring fin 98.8 1.5E-09 5E-14 89.4 3.7 49 321-370 13-62 (108)
37 3lrq_A E3 ubiquitin-protein li 98.8 1.2E-09 4.1E-14 89.1 3.1 48 322-370 21-70 (100)
38 2y1n_A E3 ubiquitin-protein li 98.8 1.4E-09 4.9E-14 108.9 4.2 55 322-377 331-386 (389)
39 2ecl_A Ring-box protein 2; RNF 98.8 2.1E-09 7.4E-14 84.5 4.2 48 322-370 14-76 (81)
40 3fl2_A E3 ubiquitin-protein li 98.8 1.8E-09 6.3E-14 91.0 4.0 48 322-370 51-99 (124)
41 2y43_A E3 ubiquitin-protein li 98.8 2.4E-09 8E-14 86.7 4.0 48 322-370 21-69 (99)
42 1bor_A Transcription factor PM 98.8 6.5E-10 2.2E-14 81.4 0.5 47 320-370 3-49 (56)
43 4ap4_A E3 ubiquitin ligase RNF 98.8 2.4E-09 8.3E-14 89.8 3.8 51 321-372 5-62 (133)
44 1g25_A CDK-activating kinase a 98.8 2E-09 6.9E-14 80.5 2.8 48 323-371 3-56 (65)
45 2kre_A Ubiquitin conjugation f 98.8 2.7E-09 9.2E-14 87.6 3.7 52 318-370 24-75 (100)
46 2kr4_A Ubiquitin conjugation f 98.8 6.1E-09 2.1E-13 82.8 5.0 52 319-371 10-61 (85)
47 3l11_A E3 ubiquitin-protein li 98.8 8.6E-10 2.9E-14 91.7 -0.1 50 320-370 12-62 (115)
48 2ckl_B Ubiquitin ligase protei 98.7 1.1E-09 3.9E-14 96.7 0.4 49 321-370 52-102 (165)
49 3hct_A TNF receptor-associated 98.7 2.8E-09 9.7E-14 89.3 2.8 52 319-371 14-66 (118)
50 1jm7_A BRCA1, breast cancer ty 98.7 3E-09 1E-13 87.5 2.9 47 323-370 21-70 (112)
51 1e4u_A Transcriptional repress 98.7 3.7E-09 1.3E-13 83.0 3.1 52 320-372 8-64 (78)
52 1z6u_A NP95-like ring finger p 98.7 4.6E-09 1.6E-13 92.1 4.0 49 322-371 77-126 (150)
53 1wgm_A Ubiquitin conjugation f 98.7 1.7E-08 5.8E-13 82.5 5.7 50 320-370 19-69 (98)
54 3dpl_R Ring-box protein 1; ubi 98.7 1.5E-08 5.1E-13 84.2 4.7 46 323-369 37-100 (106)
55 1rmd_A RAG1; V(D)J recombinati 98.6 1.5E-08 5.1E-13 84.3 3.3 48 322-370 22-70 (116)
56 4ap4_A E3 ubiquitin ligase RNF 98.6 1.4E-08 4.8E-13 85.1 2.0 50 321-371 70-126 (133)
57 3knv_A TNF receptor-associated 98.6 1.1E-08 3.9E-13 88.8 1.3 48 320-368 28-76 (141)
58 2c2l_A CHIP, carboxy terminus 98.5 4.3E-08 1.5E-12 92.0 4.3 67 302-370 188-255 (281)
59 2d8s_A Cellular modulator of i 98.5 4.3E-08 1.5E-12 77.4 3.1 53 320-373 12-73 (80)
60 1jm7_B BARD1, BRCA1-associated 98.5 1.6E-08 5.6E-13 84.4 -0.0 45 322-369 21-66 (117)
61 3hcs_A TNF receptor-associated 98.4 6.5E-08 2.2E-12 85.7 2.8 51 319-370 14-65 (170)
62 4a0k_B E3 ubiquitin-protein li 98.4 5.9E-08 2E-12 82.0 0.6 46 323-369 48-111 (117)
63 2f42_A STIP1 homology and U-bo 98.2 2.6E-07 9E-12 83.5 2.1 52 319-371 102-154 (179)
64 2yu4_A E3 SUMO-protein ligase 98.2 6E-07 2.1E-11 72.3 3.7 46 321-367 5-59 (94)
65 2bay_A PRE-mRNA splicing facto 97.9 3.4E-06 1.2E-10 63.0 2.4 54 323-377 3-57 (61)
66 3htk_C E3 SUMO-protein ligase 97.8 9.3E-06 3.2E-10 77.3 4.3 49 321-370 179-232 (267)
67 2ct0_A Non-SMC element 1 homol 97.8 2.8E-05 9.5E-10 60.4 5.7 49 321-370 13-64 (74)
68 1vyx_A ORF K3, K3RING; zinc-bi 97.8 8.3E-06 2.8E-10 60.7 2.5 48 321-369 4-58 (60)
69 1wim_A KIAA0161 protein; ring 97.8 8.6E-06 2.9E-10 65.2 2.1 45 322-367 4-61 (94)
70 3vk6_A E3 ubiquitin-protein li 97.7 2.2E-05 7.5E-10 64.2 4.5 51 325-376 3-55 (101)
71 3k1l_B Fancl; UBC, ring, RWD, 97.5 2.1E-05 7.2E-10 77.5 0.8 71 300-371 278-374 (381)
72 2ko5_A Ring finger protein Z; 94.9 0.0078 2.7E-07 48.6 1.3 52 322-376 27-79 (99)
73 3nw0_A Non-structural maintena 92.2 0.11 3.7E-06 48.5 4.3 48 322-370 179-229 (238)
74 2jun_A Midline-1; B-BOX, TRIM, 91.7 0.059 2E-06 42.9 1.6 32 322-354 2-36 (101)
75 2cs3_A Protein C14ORF4, MY039 88.8 0.2 6.9E-06 39.2 2.2 33 321-354 13-49 (93)
76 3i2d_A E3 SUMO-protein ligase 58.6 9.9 0.00034 37.6 4.9 47 322-369 248-299 (371)
77 1z60_A TFIIH basal transcripti 57.2 6 0.0002 29.0 2.3 40 324-364 16-58 (59)
78 3m62_A Ubiquitin conjugation f 47.6 21 0.00071 39.6 5.6 53 319-371 887-939 (968)
79 2d8v_A Zinc finger FYVE domain 45.6 9.1 0.00031 28.7 1.7 34 320-355 5-39 (67)
80 4fo9_A E3 SUMO-protein ligase 44.2 16 0.00055 36.0 3.8 47 322-369 214-265 (360)
81 1weo_A Cellulose synthase, cat 44.0 35 0.0012 27.1 5.0 48 322-370 15-70 (93)
82 2a20_A Regulating synaptic mem 41.9 0.96 3.3E-05 33.3 -4.0 43 320-366 6-59 (62)
83 2v8f_C MDIA1, profilin IIA; al 40.2 20 0.0007 21.6 2.3 7 109-115 8-14 (26)
84 2fiy_A Protein FDHE homolog; F 33.7 7.2 0.00025 37.6 -0.6 52 321-375 180-237 (309)
85 2lri_C Autoimmune regulator; Z 33.6 28 0.00096 25.6 2.8 46 321-368 10-60 (66)
86 3ql9_A Transcriptional regulat 33.4 29 0.001 29.2 3.2 47 320-367 54-111 (129)
87 1wev_A Riken cDNA 1110020M19; 31.6 5.4 0.00018 31.2 -1.6 48 321-369 14-74 (88)
88 1wem_A Death associated transc 30.3 21 0.00071 26.7 1.6 55 311-367 4-70 (76)
89 2csz_A Synaptotagmin-like prot 27.5 23 0.00078 27.2 1.4 46 320-366 22-72 (76)
90 2lbm_A Transcriptional regulat 26.0 49 0.0017 28.2 3.4 47 320-367 60-117 (142)
91 2pv0_B DNA (cytosine-5)-methyl 22.4 53 0.0018 32.5 3.3 66 299-368 72-149 (386)
92 1wen_A Inhibitor of growth fam 20.9 55 0.0019 24.4 2.4 46 320-369 13-67 (71)
No 1
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.48 E-value=1.4e-14 Score=111.12 Aligned_cols=59 Identities=34% Similarity=0.871 Sum_probs=51.9
Q ss_pred CCCCCCCcceecccCCcCeEEeCCCCccccHHHHHHHHhCCCCCccccccccceEEEEcCCCC
Q 016892 318 EDSDPGKECVICMTEPKDTAVLPCRHMCMCGECAKELRLQSNKCPICRQPIEELIEIKINSGD 380 (381)
Q Consensus 318 ~~~~~~~~CvICl~~~~d~vlLPCgH~cfC~~Ca~~l~~~s~~CPiCR~~I~~~i~I~i~~~~ 380 (381)
...++..+|+||++..++++++||||++||..|+..+ ..||+||+.|..+++|+..+++
T Consensus 10 ~~~~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~----~~CP~CR~~i~~~~~i~~~~sg 68 (68)
T 2ea5_A 10 PSEENSKDCVVCQNGTVNWVLLPCRHTCLCDGCVKYF----QQCPMCRQFVQESFALSGPSSG 68 (68)
T ss_dssp CSCCCSSCCSSSSSSCCCCEETTTTBCCSCTTHHHHC----SSCTTTCCCCCCEECCCSSCCC
T ss_pred ccCCCCCCCCCcCcCCCCEEEECCCChhhhHHHHhcC----CCCCCCCcchhceEEeecCCCC
Confidence 3445678999999999999999999999999999854 5899999999999999887653
No 2
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=99.47 E-value=1.7e-14 Score=108.96 Aligned_cols=56 Identities=30% Similarity=0.756 Sum_probs=51.7
Q ss_pred CCCCcceecccCCcCeEEe--CCCCccccHHHHHHHHhCCCCCccccccccceEEEEc
Q 016892 321 DPGKECVICMTEPKDTAVL--PCRHMCMCGECAKELRLQSNKCPICRQPIEELIEIKI 376 (381)
Q Consensus 321 ~~~~~CvICl~~~~d~vlL--PCgH~cfC~~Ca~~l~~~s~~CPiCR~~I~~~i~I~i 376 (381)
+...+|.||++..++++++ ||||+++|.+|+..|+.++.+||+||+.|..+++|++
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~~~i~i~~ 62 (63)
T 2vje_B 5 NLLKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKAGASCPICKKEIQLVIKVFI 62 (63)
T ss_dssp GGGSBCTTTSSSBSCEEEEETTEEEEEECHHHHHHHHHTTCBCTTTCCBCCEEEEEEE
T ss_pred CcCCCCcccCCcCCCeEEEecCCCCHhHHHHHHHHHHHhCCcCCCcCchhhceEEEec
Confidence 3567999999999999888 9999999999999998888899999999999999986
No 3
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=99.45 E-value=2.8e-14 Score=108.02 Aligned_cols=55 Identities=35% Similarity=0.806 Sum_probs=51.4
Q ss_pred CCCcceecccCCcCeEEe--CCCCccccHHHHHHHHhCCCCCccccccccceEEEEc
Q 016892 322 PGKECVICMTEPKDTAVL--PCRHMCMCGECAKELRLQSNKCPICRQPIEELIEIKI 376 (381)
Q Consensus 322 ~~~~CvICl~~~~d~vlL--PCgH~cfC~~Ca~~l~~~s~~CPiCR~~I~~~i~I~i 376 (381)
++.+|.||+++.++++++ ||||+++|.+|+..|+.++..||+||+.|..+++|++
T Consensus 7 ~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~~~i~i~~ 63 (64)
T 2vje_A 7 AIEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQMIVLTYF 63 (64)
T ss_dssp GGSCCTTTSSSCSCEEEEETTEEEEEECHHHHHHHHHTTCCCTTTCCCCCEEEEEEC
T ss_pred CcCCCCcCCCCCCCEEEECCCCCChhhHHHHHHHHHHcCCcCCCcCcchhceEeeec
Confidence 456899999999999988 9999999999999999888899999999999999986
No 4
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=99.20 E-value=3.6e-12 Score=98.80 Aligned_cols=51 Identities=33% Similarity=0.778 Sum_probs=47.0
Q ss_pred CCCcceecccCCcCeEEeCCCCccccHHHHHHHHhCCCCCccccccccceEEEEc
Q 016892 322 PGKECVICMTEPKDTAVLPCRHMCMCGECAKELRLQSNKCPICRQPIEELIEIKI 376 (381)
Q Consensus 322 ~~~~CvICl~~~~d~vlLPCgH~cfC~~Ca~~l~~~s~~CPiCR~~I~~~i~I~i 376 (381)
++..|.||++..+++++++|||.+||..|+..| ..||+||+.|...++|++
T Consensus 23 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~~~~~i~~ 73 (74)
T 4ic3_A 23 EEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAV----DKCPMCYTVITFKQKILM 73 (74)
T ss_dssp HHTBCTTTSSSBCCEEEETTCCBCCCHHHHTTC----SBCTTTCCBCSEEEECBC
T ss_pred cCCCCCCCCCCCCCEEEcCCCChhHHHHhhhcC----ccCCCcCcCccCcEEEee
Confidence 346899999999999999999999999999887 599999999999998876
No 5
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.20 E-value=1.4e-11 Score=96.46 Aligned_cols=54 Identities=31% Similarity=0.681 Sum_probs=48.0
Q ss_pred CCCCCCCcceecccCCcCeEEeCCCCccccHHHHHHHHhCCCCCccccccccceE
Q 016892 318 EDSDPGKECVICMTEPKDTAVLPCRHMCMCGECAKELRLQSNKCPICRQPIEELI 372 (381)
Q Consensus 318 ~~~~~~~~CvICl~~~~d~vlLPCgH~cfC~~Ca~~l~~~s~~CPiCR~~I~~~i 372 (381)
++.++...|.||++.+.+.++++|||. ||..|+..|+.....||+||..+...+
T Consensus 10 ~~~~~~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~CP~Cr~~~~~~~ 63 (81)
T 2csy_A 10 EEEEIPFRCFICRQAFQNPVVTKCRHY-FCESCALEHFRATPRCYICDQPTGGIF 63 (81)
T ss_dssp SCCCCCSBCSSSCSBCCSEEECTTSCE-EEHHHHHHHHHHCSBCSSSCCBCCSCC
T ss_pred ccCCCCCCCcCCCchhcCeeEccCCCH-hHHHHHHHHHHCCCcCCCcCccccccC
Confidence 445667899999999999999999999 999999999988889999999987543
No 6
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.19 E-value=1.1e-11 Score=94.81 Aligned_cols=52 Identities=35% Similarity=0.717 Sum_probs=46.7
Q ss_pred CCCCCCcceecccCCcCeEEeCCCCccccHHHHHHHHhCCCCCccccccccce
Q 016892 319 DSDPGKECVICMTEPKDTAVLPCRHMCMCGECAKELRLQSNKCPICRQPIEEL 371 (381)
Q Consensus 319 ~~~~~~~CvICl~~~~d~vlLPCgH~cfC~~Ca~~l~~~s~~CPiCR~~I~~~ 371 (381)
...+..+|.||++.+.+.++++|||. ||..|+..|......||+||..|...
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~CgH~-fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 62 (71)
T 2d8t_A 11 PSLTVPECAICLQTCVHPVSLPCKHV-FCYLCVKGASWLGKRCALCRQEIPED 62 (71)
T ss_dssp SSSSCCBCSSSSSBCSSEEEETTTEE-EEHHHHHHCTTCSSBCSSSCCBCCHH
T ss_pred cCCCCCCCccCCcccCCCEEccCCCH-HHHHHHHHHHHCCCcCcCcCchhCHh
Confidence 34567899999999999999999999 99999999988888999999998754
No 7
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.18 E-value=6.8e-12 Score=95.32 Aligned_cols=59 Identities=32% Similarity=0.696 Sum_probs=50.5
Q ss_pred CCCCCCCcceecccCCcCeEEeCCCCccccHHHHHHHHhCCCCCccccccccceEEEEcCC
Q 016892 318 EDSDPGKECVICMTEPKDTAVLPCRHMCMCGECAKELRLQSNKCPICRQPIEELIEIKINS 378 (381)
Q Consensus 318 ~~~~~~~~CvICl~~~~d~vlLPCgH~cfC~~Ca~~l~~~s~~CPiCR~~I~~~i~I~i~~ 378 (381)
+...+..+|.||++.+.+ ++++|+|. ||..|+..|..+...||+||..+.....+++..
T Consensus 10 ~~~~~~~~C~IC~~~~~~-~~~~CgH~-fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~~ 68 (70)
T 2ecn_A 10 KQLTDEEECCICMDGRAD-LILPCAHS-FCQKCIDKWSDRHRNCPICRLQMTGANESSGPS 68 (70)
T ss_dssp CCCCCCCCCSSSCCSCCS-EEETTTEE-ECHHHHHHSSCCCSSCHHHHHCTTCCCCCCCCC
T ss_pred hcCCCCCCCeeCCcCccC-cccCCCCc-ccHHHHHHHHHCcCcCCCcCCcccCCCccccCC
Confidence 344567899999999999 88999999 999999999888889999999998776555443
No 8
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=99.18 E-value=5.8e-12 Score=99.18 Aligned_cols=53 Identities=28% Similarity=0.813 Sum_probs=48.1
Q ss_pred CCcceecccCCcCeEEeCCCCccccHHHHHHHHhCCCCCccccccccceEEEEcCCC
Q 016892 323 GKECVICMTEPKDTAVLPCRHMCMCGECAKELRLQSNKCPICRQPIEELIEIKINSG 379 (381)
Q Consensus 323 ~~~CvICl~~~~d~vlLPCgH~cfC~~Ca~~l~~~s~~CPiCR~~I~~~i~I~i~~~ 379 (381)
+.+|.||++..++++++||||++||..|+..|+ .||+||..|...++|++..+
T Consensus 18 ~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~~----~CP~Cr~~i~~~~~i~~p~~ 70 (79)
T 2yho_A 18 AMLCMVCCEEEINSTFCPCGHTVCCESCAAQLQ----SCPVCRSRVEHVQHVYLPTH 70 (79)
T ss_dssp HTBCTTTSSSBCCEEEETTCBCCBCHHHHTTCS----BCTTTCCBCCEEEECBCTTC
T ss_pred CCEeEEeCcccCcEEEECCCCHHHHHHHHHhcC----cCCCCCchhhCeEEEEeCcc
Confidence 458999999999999999999999999998764 99999999999999887543
No 9
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.15 E-value=2.7e-11 Score=91.73 Aligned_cols=54 Identities=33% Similarity=0.808 Sum_probs=45.7
Q ss_pred CCCCCCCcceecccCC---cCeEEeCCCCccccHHHHHHHHhCCCCCccccccccceE
Q 016892 318 EDSDPGKECVICMTEP---KDTAVLPCRHMCMCGECAKELRLQSNKCPICRQPIEELI 372 (381)
Q Consensus 318 ~~~~~~~~CvICl~~~---~d~vlLPCgH~cfC~~Ca~~l~~~s~~CPiCR~~I~~~i 372 (381)
++.+...+|.||++.+ ...++++|+|. ||..|+..|+.+...||+||..|...+
T Consensus 9 ~~~~~~~~C~IC~~~~~~~~~~~~~~C~H~-fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 65 (69)
T 2kiz_A 9 TEEDTEEKCTICLSILEEGEDVRRLPCMHL-FHQVCVDQWLITNKKCPICRVDIEAQL 65 (69)
T ss_dssp CSTTCCCSBTTTTBCCCSSSCEEECTTSCE-EEHHHHHHHHHHCSBCTTTCSBSCSCC
T ss_pred CcCCCCCCCeeCCccccCCCcEEEeCCCCH-HHHHHHHHHHHcCCCCcCcCccccCcC
Confidence 3445678999998876 45678999999 999999999988889999999988654
No 10
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.15 E-value=1.8e-11 Score=93.76 Aligned_cols=55 Identities=25% Similarity=0.554 Sum_probs=48.3
Q ss_pred CCCCCCCCcceecccCCcCeEEe-CCCCccccHHHHHHHHhCCCCCccccccccceE
Q 016892 317 FEDSDPGKECVICMTEPKDTAVL-PCRHMCMCGECAKELRLQSNKCPICRQPIEELI 372 (381)
Q Consensus 317 ~~~~~~~~~CvICl~~~~d~vlL-PCgH~cfC~~Ca~~l~~~s~~CPiCR~~I~~~i 372 (381)
.++.++...|.||++.+.+.+.+ +|||. ||..|+..|+.....||+||..+....
T Consensus 9 ~~~~~~~~~C~IC~~~~~~p~~~~~CgH~-fC~~Ci~~~~~~~~~CP~Cr~~~~~~~ 64 (72)
T 2djb_A 9 LSELTPYILCSICKGYLIDATTITECLHT-FCKSCIVRHFYYSNRCPKCNIVVHQTQ 64 (72)
T ss_dssp CCCCCGGGSCTTTSSCCSSCEECSSSCCE-ECHHHHHHHHHHCSSCTTTCCCCCSSC
T ss_pred HhhcCCCCCCCCCChHHHCcCEECCCCCH-HHHHHHHHHHHcCCcCCCcCcccCccc
Confidence 34556788999999999999887 99999 999999999988889999999987643
No 11
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.15 E-value=1.6e-11 Score=92.31 Aligned_cols=52 Identities=27% Similarity=0.692 Sum_probs=45.5
Q ss_pred CCCCCCCcceecccCCcCe-------EEeCCCCccccHHHHHHHHhCCCCCccccccccc
Q 016892 318 EDSDPGKECVICMTEPKDT-------AVLPCRHMCMCGECAKELRLQSNKCPICRQPIEE 370 (381)
Q Consensus 318 ~~~~~~~~CvICl~~~~d~-------vlLPCgH~cfC~~Ca~~l~~~s~~CPiCR~~I~~ 370 (381)
+...+..+|.||++.+.+. ++++|||. ||..|+..|+.+...||+||..|..
T Consensus 10 ~~~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~-fc~~Ci~~~~~~~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 10 LRPSGTVSCPICMDGYSEIVQNGRLIVSTECGHV-FCSQCLRDSLKNANTCPTCRKKINH 68 (69)
T ss_dssp CCTTCCCCCTTTCCCHHHHTTTTCCEEECSSSCE-EEHHHHHHHHHHCSSCTTTCCCCCC
T ss_pred cCCCCCCCCcccCccccccccccCCeEeCCCCCh-hcHHHHHHHHHcCCCCCCCCCccCc
Confidence 3456678999999998776 88999999 9999999999888899999998864
No 12
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.10 E-value=1.1e-11 Score=96.09 Aligned_cols=50 Identities=34% Similarity=0.788 Sum_probs=45.3
Q ss_pred CCcceecccCCcCeEEeCCCCccccHHHHHHHHhCCCCCccccccccceEEEEc
Q 016892 323 GKECVICMTEPKDTAVLPCRHMCMCGECAKELRLQSNKCPICRQPIEELIEIKI 376 (381)
Q Consensus 323 ~~~CvICl~~~~d~vlLPCgH~cfC~~Ca~~l~~~s~~CPiCR~~I~~~i~I~i 376 (381)
..+|.||++.++++++++|||.+||..|+..+ ..||+||..|...++|++
T Consensus 25 ~~~C~IC~~~~~~~~~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~~~~~i~~ 74 (75)
T 2ecg_A 25 EKLCKICMDRNIAIVFVPCGHLVTCKQCAEAV----DKCPMCYTVITFKQKIFM 74 (75)
T ss_dssp HHSCSSSCSSCCCBCCSSSCCCCBCHHHHHHC----SBCTTTCCBCCCCCBCCC
T ss_pred CCCCCcCCCCCCCEEEecCCCHHHHHHHhhCC----CCCccCCceecCcEEEec
Confidence 45899999999999999999999999999754 589999999999888875
No 13
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.10 E-value=2.9e-11 Score=91.18 Aligned_cols=55 Identities=29% Similarity=0.784 Sum_probs=47.7
Q ss_pred CCCCcceecccCCcCe-EEeCCCCccccHHHHHHHHhCCCCCccccccccceEEEEc
Q 016892 321 DPGKECVICMTEPKDT-AVLPCRHMCMCGECAKELRLQSNKCPICRQPIEELIEIKI 376 (381)
Q Consensus 321 ~~~~~CvICl~~~~d~-vlLPCgH~cfC~~Ca~~l~~~s~~CPiCR~~I~~~i~I~i 376 (381)
+.+..|.||++...+. ++++|||. ||..|+..|..++..||+||..+...+....
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~C~H~-fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~ 58 (68)
T 1chc_A 3 TVAERCPICLEDPSNYSMALPCLHA-FCYVCITRWIRQNPTCPLCKVPVESVVHTIE 58 (68)
T ss_dssp CCCCCCSSCCSCCCSCEEETTTTEE-ESTTHHHHHHHHSCSTTTTCCCCCCEECCCC
T ss_pred CCCCCCeeCCccccCCcEecCCCCe-eHHHHHHHHHhCcCcCcCCChhhHhhhhccc
Confidence 3467999999999984 78899999 9999999999888899999999997765443
No 14
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.10 E-value=9.4e-11 Score=89.42 Aligned_cols=52 Identities=21% Similarity=0.609 Sum_probs=45.3
Q ss_pred CCCCCCCcceecccCCcCeEEeCCCCccccHHHHHHHHh---CCCCCccccccccc
Q 016892 318 EDSDPGKECVICMTEPKDTAVLPCRHMCMCGECAKELRL---QSNKCPICRQPIEE 370 (381)
Q Consensus 318 ~~~~~~~~CvICl~~~~d~vlLPCgH~cfC~~Ca~~l~~---~s~~CPiCR~~I~~ 370 (381)
+..++...|.||++.+.+.++++|||. ||..|+..|.. ....||+||..+..
T Consensus 15 ~~~~~~~~C~IC~~~~~~~~~~~CgH~-fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 69 (73)
T 2ysl_A 15 NKLQEEVICPICLDILQKPVTIDCGHN-FCLKCITQIGETSCGFFKCPLCKTSVRK 69 (73)
T ss_dssp CCCCCCCBCTTTCSBCSSEEECTTCCE-EEHHHHHHHCSSSCSCCCCSSSCCCCCC
T ss_pred HhCccCCEeccCCcccCCeEEcCCCCh-hhHHHHHHHHHcCCCCCCCCCCCCcCCc
Confidence 345677899999999999999999999 99999999986 34589999998864
No 15
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.09 E-value=5.2e-11 Score=92.24 Aligned_cols=53 Identities=28% Similarity=0.711 Sum_probs=44.7
Q ss_pred CCCCCCCcceecccCCc---CeEEeCCCCccccHHHHHHHHhCCCCCccccccccce
Q 016892 318 EDSDPGKECVICMTEPK---DTAVLPCRHMCMCGECAKELRLQSNKCPICRQPIEEL 371 (381)
Q Consensus 318 ~~~~~~~~CvICl~~~~---d~vlLPCgH~cfC~~Ca~~l~~~s~~CPiCR~~I~~~ 371 (381)
+...+..+|.||++.+. ..++++|+|. ||..|+..|+.+...||+||..+...
T Consensus 10 ~~~~~~~~C~IC~~~~~~~~~~~~~~C~H~-fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 65 (78)
T 2ect_A 10 EHVGSGLECPVCKEDYALGESVRQLPCNHL-FHDSCIVPWLEQHDSCPVCRKSLTGQ 65 (78)
T ss_dssp TTSSSSCCCTTTTSCCCTTSCEEECTTSCE-EETTTTHHHHTTTCSCTTTCCCCCCS
T ss_pred ccCCCCCCCeeCCccccCCCCEEEeCCCCe-ecHHHHHHHHHcCCcCcCcCCccCCc
Confidence 34556789999988774 3467899999 99999999998888999999998764
No 16
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.08 E-value=4.1e-11 Score=91.92 Aligned_cols=58 Identities=21% Similarity=0.618 Sum_probs=47.9
Q ss_pred CCCCCCCcceecccCCc---CeEEeCCCCccccHHHHHHHHhCCCCCccccccccceEEEEc
Q 016892 318 EDSDPGKECVICMTEPK---DTAVLPCRHMCMCGECAKELRLQSNKCPICRQPIEELIEIKI 376 (381)
Q Consensus 318 ~~~~~~~~CvICl~~~~---d~vlLPCgH~cfC~~Ca~~l~~~s~~CPiCR~~I~~~i~I~i 376 (381)
.+.+.+.+|.||++.+. ..++++|+|. ||..|+..|+.....||+||..|..+..+..
T Consensus 10 ~~~~~~~~C~IC~~~~~~~~~~~~~~C~H~-f~~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~ 70 (74)
T 2ep4_A 10 KELNLHELCAVCLEDFKPRDELGICPCKHA-FHRKCLIKWLEVRKVCPLCNMPVLQLAQLSG 70 (74)
T ss_dssp CCCCCSCBCSSSCCBCCSSSCEEEETTTEE-EEHHHHHHHHHHCSBCTTTCCBCSSCCSCCC
T ss_pred ccCCCCCCCcCCCcccCCCCcEEEcCCCCE-ecHHHHHHHHHcCCcCCCcCcccccccccCC
Confidence 44566789999999874 3456799999 9999999999888899999999988765543
No 17
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.05 E-value=4.1e-11 Score=92.44 Aligned_cols=53 Identities=30% Similarity=0.639 Sum_probs=45.6
Q ss_pred CCCCCCCCcceecccCCcCeEEeC-CCCccccHHHHHHHHhCC--CCCccccccccc
Q 016892 317 FEDSDPGKECVICMTEPKDTAVLP-CRHMCMCGECAKELRLQS--NKCPICRQPIEE 370 (381)
Q Consensus 317 ~~~~~~~~~CvICl~~~~d~vlLP-CgH~cfC~~Ca~~l~~~s--~~CPiCR~~I~~ 370 (381)
.++..+...|.||++.+.+.++++ |||. ||..|+..|+... ..||+||+.+..
T Consensus 9 ~~~~~~~~~C~IC~~~~~~p~~~~~CgH~-fC~~Ci~~~~~~~~~~~CP~Cr~~~~~ 64 (74)
T 2yur_A 9 DDPIPDELLCLICKDIMTDAVVIPCCGNS-YCDECIRTALLESDEHTCPTCHQNDVS 64 (74)
T ss_dssp CCCSCGGGSCSSSCCCCTTCEECSSSCCE-ECTTHHHHHHHHSSSSCCSSSCCSSCC
T ss_pred cccCCCCCCCcCCChHHhCCeEcCCCCCH-HHHHHHHHHHHhcCCCcCCCCCCcCCC
Confidence 345567789999999999999999 9999 9999999998754 589999997543
No 18
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.05 E-value=9.2e-11 Score=94.18 Aligned_cols=49 Identities=29% Similarity=0.610 Sum_probs=43.7
Q ss_pred CCCCcceecccCCcC---eEEeCCCCccccHHHHHHHHhCCCCCccccccccc
Q 016892 321 DPGKECVICMTEPKD---TAVLPCRHMCMCGECAKELRLQSNKCPICRQPIEE 370 (381)
Q Consensus 321 ~~~~~CvICl~~~~d---~vlLPCgH~cfC~~Ca~~l~~~s~~CPiCR~~I~~ 370 (381)
+++..|.||++.+.+ .+.++|+|. ||..|+..|+..+..||+||..|..
T Consensus 38 ~~~~~C~IC~~~~~~~~~~~~l~C~H~-Fh~~Ci~~wl~~~~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 38 GQEMCCPICCSEYVKGDVATELPCHHY-FHKPCVSIWLQKSGTCPVCRCMFPP 89 (91)
T ss_dssp SSCSEETTTTEECCTTCEEEEETTTEE-EEHHHHHHHHTTTCBCTTTCCBSSC
T ss_pred CCCCCCcccChhhcCCCcEEecCCCCh-HHHHHHHHHHHcCCcCcCcCccCCC
Confidence 456799999988876 778999999 9999999999988999999998865
No 19
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.04 E-value=8.8e-11 Score=84.72 Aligned_cols=47 Identities=30% Similarity=0.818 Sum_probs=42.0
Q ss_pred CCCcceecccCCcC----eEEeCCCCccccHHHHHHHHhCCCCCcccccccc
Q 016892 322 PGKECVICMTEPKD----TAVLPCRHMCMCGECAKELRLQSNKCPICRQPIE 369 (381)
Q Consensus 322 ~~~~CvICl~~~~d----~vlLPCgH~cfC~~Ca~~l~~~s~~CPiCR~~I~ 369 (381)
++.+|.||++...+ .++++|+|. ||..|+..|......||+||+.|.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~-fc~~Ci~~~~~~~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLPCGHL-LHRTCYEEMLKEGYRCPLCSGPSS 54 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECTTSCE-EETTHHHHHHHHTCCCTTSCCSSC
T ss_pred CCCcCcccChhhcCCCcCeEecCCCCc-ccHHHHHHHHHcCCcCCCCCCcCC
Confidence 46789999998865 788999999 999999999988899999999875
No 20
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.04 E-value=1.8e-10 Score=89.70 Aligned_cols=52 Identities=27% Similarity=0.590 Sum_probs=45.9
Q ss_pred CCCCCCCcceecccCCcCeEEeCCCCccccHHHHHHHHhC------CCCCccccccccc
Q 016892 318 EDSDPGKECVICMTEPKDTAVLPCRHMCMCGECAKELRLQ------SNKCPICRQPIEE 370 (381)
Q Consensus 318 ~~~~~~~~CvICl~~~~d~vlLPCgH~cfC~~Ca~~l~~~------s~~CPiCR~~I~~ 370 (381)
+...+..+|.||++.+.+.++++|||. ||..|+..|+.. ...||+||..+..
T Consensus 14 ~~~~~~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecw_A 14 EMIKEEVTCPICLELLKEPVSADCNHS-FCRACITLNYESNRNTDGKGNCPVCRVPYPF 71 (85)
T ss_dssp CCCCTTTSCTTTCSCCSSCEECTTSCC-BCHHHHHHHHHHSBCTTSCBCCTTTCCCCCT
T ss_pred HhCccCCCCcCCChhhCcceeCCCCCH-HHHHHHHHHHHhccCCCCCCCCCCCCCcCCH
Confidence 345667899999999999999999999 999999998776 5689999999874
No 21
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.03 E-value=1.3e-10 Score=87.41 Aligned_cols=52 Identities=23% Similarity=0.500 Sum_probs=45.3
Q ss_pred CCCCCCCcceecccCCcCeEEeCCCCccccHHHHHHHHh-CCCCCccccccccc
Q 016892 318 EDSDPGKECVICMTEPKDTAVLPCRHMCMCGECAKELRL-QSNKCPICRQPIEE 370 (381)
Q Consensus 318 ~~~~~~~~CvICl~~~~d~vlLPCgH~cfC~~Ca~~l~~-~s~~CPiCR~~I~~ 370 (381)
+...+...|.||++..++.++++|||. ||..|+..|+. ....||+||+.+..
T Consensus 10 ~~~~~~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (66)
T 2ecy_A 10 KTVEDKYKCEKCHLVLCSPKQTECGHR-FCESCMAALLSSSSPKCTACQESIVK 62 (66)
T ss_dssp CSCCCCEECTTTCCEESSCCCCSSSCC-CCHHHHHHHHTTSSCCCTTTCCCCCT
T ss_pred hcCCcCCCCCCCChHhcCeeECCCCCH-HHHHHHHHHHHhCcCCCCCCCcCCCh
Confidence 344667899999999999999999999 99999999984 45689999998864
No 22
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.02 E-value=2e-10 Score=90.50 Aligned_cols=52 Identities=29% Similarity=0.673 Sum_probs=45.1
Q ss_pred CCCCCCCcceecccCCcC----eEEeCCCCccccHHHHHHHHhCC---CCCccccccccc
Q 016892 318 EDSDPGKECVICMTEPKD----TAVLPCRHMCMCGECAKELRLQS---NKCPICRQPIEE 370 (381)
Q Consensus 318 ~~~~~~~~CvICl~~~~d----~vlLPCgH~cfC~~Ca~~l~~~s---~~CPiCR~~I~~ 370 (381)
+...+..+|.||++.+.+ .++++|||. ||..|+..|.... ..||+||..+..
T Consensus 10 ~~~~~~~~C~IC~~~~~~~~~~~~~~~CgH~-fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 68 (88)
T 2ct2_A 10 DALREVLECPICMESFTEEQLRPKLLHCGHT-ICRQCLEKLLASSINGVRCPFCSKITRI 68 (88)
T ss_dssp CCCCSCCBCTTTCCBCCTTSSCEEECSSSCE-EEHHHHHHHHHHCSSCBCCTTTCCCBCC
T ss_pred hhccCCCCCccCCccccccCCCeEECCCCCh-hhHHHHHHHHHcCCCCcCCCCCCCcccc
Confidence 445677899999999998 899999999 9999999998765 689999998753
No 23
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.02 E-value=6.8e-11 Score=89.60 Aligned_cols=49 Identities=29% Similarity=0.752 Sum_probs=44.1
Q ss_pred CCCCcceecccCCcCe-------EEeCCCCccccHHHHHHHHhCCCCCccccccccc
Q 016892 321 DPGKECVICMTEPKDT-------AVLPCRHMCMCGECAKELRLQSNKCPICRQPIEE 370 (381)
Q Consensus 321 ~~~~~CvICl~~~~d~-------vlLPCgH~cfC~~Ca~~l~~~s~~CPiCR~~I~~ 370 (381)
+++.+|.||++...+. ++++|||. ||..|+..|..+...||+||..+..
T Consensus 8 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~-fc~~Ci~~~~~~~~~CP~Cr~~~~~ 63 (71)
T 3ng2_A 8 SGTVSCPICMDGYSEIVQNGRLIVSTECGHV-FCSQCLRDSLKNANTCPTCRKKINH 63 (71)
T ss_dssp TTCCBCTTTCCBHHHHHTTTCCEEECTTSCE-EEHHHHHHHHHHCSBCTTTCCBCCC
T ss_pred CCCCCCcccChhhhccccccCCeEeCCCCCh-HhHHHHHHHHHcCCCCCCCCCccCh
Confidence 4567999999998776 88999999 9999999999888899999999875
No 24
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.01 E-value=1.3e-10 Score=83.99 Aligned_cols=48 Identities=35% Similarity=0.833 Sum_probs=42.3
Q ss_pred CCCCcceecccCCcC---eEEeC-CCCccccHHHHHHHHhCCCCCcccccccc
Q 016892 321 DPGKECVICMTEPKD---TAVLP-CRHMCMCGECAKELRLQSNKCPICRQPIE 369 (381)
Q Consensus 321 ~~~~~CvICl~~~~d---~vlLP-CgH~cfC~~Ca~~l~~~s~~CPiCR~~I~ 369 (381)
+++.+|.||++.+.+ .+.++ |+|. ||..|+..|..++..||+||+.|.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~-f~~~Ci~~w~~~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 3 DDGVECAVCLAELEDGEEARFLPRCGHG-FHAECVDMWLGSHSTCPLCRLTVV 54 (55)
T ss_dssp CCSCCCTTTCCCCCTTSCCEECSSSCCE-ECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred CCCCcCccCCccccCCCceEECCCCCCc-ccHHHHHHHHHcCCcCcCCCCEeE
Confidence 456799999999877 77887 9999 999999999988899999999764
No 25
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.01 E-value=9.3e-11 Score=90.36 Aligned_cols=50 Identities=30% Similarity=0.714 Sum_probs=43.2
Q ss_pred CCCCCcceecccCCcCe---EEeCCCCccccHHHHHHHHhCCCCCccccccccc
Q 016892 320 SDPGKECVICMTEPKDT---AVLPCRHMCMCGECAKELRLQSNKCPICRQPIEE 370 (381)
Q Consensus 320 ~~~~~~CvICl~~~~d~---vlLPCgH~cfC~~Ca~~l~~~s~~CPiCR~~I~~ 370 (381)
..++.+|.||++.+.+. +.++|+|. ||..|+..|...+..||+||+.+..
T Consensus 20 ~~~~~~C~IC~~~~~~~~~~~~l~C~H~-fh~~Ci~~w~~~~~~CP~Cr~~~~~ 72 (75)
T 1x4j_A 20 QSEQTLCVVCMCDFESRQLLRVLPCNHE-FHAKCVDKWLKANRTCPICRADSGP 72 (75)
T ss_dssp SSSCCEETTTTEECCBTCEEEEETTTEE-EETTHHHHHHHHCSSCTTTCCCCCC
T ss_pred cCCCCCCeECCcccCCCCeEEEECCCCH-hHHHHHHHHHHcCCcCcCcCCcCCC
Confidence 34567999999887654 77899999 9999999999888899999998864
No 26
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.01 E-value=1e-10 Score=86.65 Aligned_cols=49 Identities=29% Similarity=0.731 Sum_probs=43.5
Q ss_pred CCCcceecccCCcCe-------EEeCCCCccccHHHHHHHHhCCCCCccccccccce
Q 016892 322 PGKECVICMTEPKDT-------AVLPCRHMCMCGECAKELRLQSNKCPICRQPIEEL 371 (381)
Q Consensus 322 ~~~~CvICl~~~~d~-------vlLPCgH~cfC~~Ca~~l~~~s~~CPiCR~~I~~~ 371 (381)
++.+|.||++...+. ++++|||. ||..|+..|..++..||+||+.+...
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~-fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 57 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHV-FCSQCLRDSLKNANTCPTCRKKINHK 57 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSCE-EEHHHHHHHHHHCSBCTTTCCBCTTT
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCCc-hhHHHHHHHHHcCCCCCCCCccCCcc
Confidence 456899999988765 78899999 99999999998888999999999853
No 27
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.00 E-value=1.6e-10 Score=99.60 Aligned_cols=49 Identities=31% Similarity=0.714 Sum_probs=45.0
Q ss_pred CCcceecccCCcCeEEeCCCCccccHHHHHHHHhCCCCCccccccccceE
Q 016892 323 GKECVICMTEPKDTAVLPCRHMCMCGECAKELRLQSNKCPICRQPIEELI 372 (381)
Q Consensus 323 ~~~CvICl~~~~d~vlLPCgH~cfC~~Ca~~l~~~s~~CPiCR~~I~~~i 372 (381)
+..|.||++.+.++++++|||. ||..|+..|+..+..||+||..|....
T Consensus 53 ~~~C~iC~~~~~~~~~~~CgH~-fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 101 (138)
T 4ayc_A 53 ELQCIICSEYFIEAVTLNCAHS-FCSYCINEWMKRKIECPICRKDIKSKT 101 (138)
T ss_dssp HSBCTTTCSBCSSEEEETTSCE-EEHHHHHHHTTTCSBCTTTCCBCCCEE
T ss_pred cCCCcccCcccCCceECCCCCC-ccHHHHHHHHHcCCcCCCCCCcCCCCC
Confidence 4689999999999999999998 999999999988899999999997643
No 28
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.00 E-value=1.9e-10 Score=89.58 Aligned_cols=52 Identities=23% Similarity=0.609 Sum_probs=45.9
Q ss_pred CCCCCCCcceecccCCcCeEEeCCCCccccHHHHHHHHhC------CCCCccccccccc
Q 016892 318 EDSDPGKECVICMTEPKDTAVLPCRHMCMCGECAKELRLQ------SNKCPICRQPIEE 370 (381)
Q Consensus 318 ~~~~~~~~CvICl~~~~d~vlLPCgH~cfC~~Ca~~l~~~------s~~CPiCR~~I~~ 370 (381)
+...+..+|.||++.+.+.++++|||. ||..|+..|... ...||+||..+..
T Consensus 14 ~~~~~~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecv_A 14 VNVKEEVTCPICLELLTQPLSLDCGHS-FCQACLTANHKKSMLDKGESSCPVCRISYQP 71 (85)
T ss_dssp CCCCCCCCCTTTCSCCSSCBCCSSSCC-BCTTHHHHHHHHHHHTTSCCCCTTTCCSSCS
T ss_pred HHccCCCCCCCCCcccCCceeCCCCCH-HHHHHHHHHHHHhhcCCCCCcCCCCCCccCH
Confidence 345677899999999999999999999 999999998765 6789999999874
No 29
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=98.95 E-value=1.4e-10 Score=89.62 Aligned_cols=52 Identities=21% Similarity=0.565 Sum_probs=45.3
Q ss_pred CCCCCCCcceecccCCcCeEEeCCCCccccHHHHHHHHhC-------CCCCccccccccc
Q 016892 318 EDSDPGKECVICMTEPKDTAVLPCRHMCMCGECAKELRLQ-------SNKCPICRQPIEE 370 (381)
Q Consensus 318 ~~~~~~~~CvICl~~~~d~vlLPCgH~cfC~~Ca~~l~~~-------s~~CPiCR~~I~~ 370 (381)
+..++...|.||++.+.+.++++|||. ||..|+..|+.. ...||+||..+..
T Consensus 7 ~~~~~~~~C~IC~~~~~~p~~l~CgH~-fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~ 65 (79)
T 2egp_A 7 GNVQEEVTCPICLELLTEPLSLDCGHS-LCRACITVSNKEAVTSMGGKSSCPVCGISYSF 65 (79)
T ss_dssp CCCCCCCEETTTTEECSSCCCCSSSCC-CCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCS
T ss_pred hhcccCCCCcCCCcccCCeeECCCCCH-HHHHHHHHHHHhcccCCCCCCcCCCCCCcCCH
Confidence 345667899999999999999999999 999999998765 5689999999864
No 30
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=98.95 E-value=4.4e-10 Score=89.69 Aligned_cols=51 Identities=31% Similarity=0.692 Sum_probs=44.4
Q ss_pred CCCCCCCcceecccCCcCeEEeC-CCCccccHHHHHHHHhCC--CCCcccccccc
Q 016892 318 EDSDPGKECVICMTEPKDTAVLP-CRHMCMCGECAKELRLQS--NKCPICRQPIE 369 (381)
Q Consensus 318 ~~~~~~~~CvICl~~~~d~vlLP-CgH~cfC~~Ca~~l~~~s--~~CPiCR~~I~ 369 (381)
+...+...|.||++.+.+.++++ |||. ||..|+..|+..+ ..||+||..+.
T Consensus 8 ~~~~~~~~C~IC~~~~~~p~~~~~CgH~-fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 61 (92)
T 3ztg_A 8 DPIPDELLCLICKDIMTDAVVIPCCGNS-YCDECIRTALLESDEHTCPTCHQNDV 61 (92)
T ss_dssp CCCCTTTEETTTTEECSSCEECTTTCCE-ECHHHHHHHHHHCTTCCCTTTCCSSC
T ss_pred ccCCcCCCCCCCChhhcCceECCCCCCH-HHHHHHHHHHHhcCCCcCcCCCCcCC
Confidence 44567889999999999999999 9999 9999999987543 58999999873
No 31
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=98.94 E-value=6.1e-10 Score=86.17 Aligned_cols=50 Identities=12% Similarity=0.171 Sum_probs=45.4
Q ss_pred CCCCCcceecccCCcCeEEeCCCCccccHHHHHHHHhC-CCCCccccccccc
Q 016892 320 SDPGKECVICMTEPKDTAVLPCRHMCMCGECAKELRLQ-SNKCPICRQPIEE 370 (381)
Q Consensus 320 ~~~~~~CvICl~~~~d~vlLPCgH~cfC~~Ca~~l~~~-s~~CPiCR~~I~~ 370 (381)
..+...|.||++.+.+.++++|||. ||..|+..|+.. ...||+||..+..
T Consensus 5 ~~~~~~C~IC~~~~~~Pv~~~CgH~-fc~~Ci~~~~~~~~~~CP~C~~~~~~ 55 (78)
T 1t1h_A 5 FPEYFRCPISLELMKDPVIVSTGQT-YERSSIQKWLDAGHKTCPKSQETLLH 55 (78)
T ss_dssp CSSSSSCTTTSCCCSSEEEETTTEE-EEHHHHHHHHTTTCCBCTTTCCBCSS
T ss_pred CcccCCCCCccccccCCEEcCCCCe-ecHHHHHHHHHHCcCCCCCCcCCCCh
Confidence 4567899999999999999999999 999999999876 6789999999864
No 32
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.93 E-value=1.1e-09 Score=81.45 Aligned_cols=46 Identities=24% Similarity=0.632 Sum_probs=40.6
Q ss_pred CCCCCCCcceecccCCcCeEEeCCCCccccHHHHHHHHh---CCCCCccc
Q 016892 318 EDSDPGKECVICMTEPKDTAVLPCRHMCMCGECAKELRL---QSNKCPIC 364 (381)
Q Consensus 318 ~~~~~~~~CvICl~~~~d~vlLPCgH~cfC~~Ca~~l~~---~s~~CPiC 364 (381)
+..+++..|.||++.+.+.++++|||. ||..|+..|+. ...+||+|
T Consensus 15 ~~~~~~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 15 NKLQEEVICPICLDILQKPVTIDCGHN-FCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCCCCBCTTTCSBCSSCEECTTSSE-ECHHHHHHHHHHCSSCCCCSCC
T ss_pred HhCccCCCCCcCCchhCCeEEeCCCCc-chHHHHHHHHHcCCCCCcCcCC
Confidence 345678899999999999999999999 99999999987 44589998
No 33
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.90 E-value=1.1e-09 Score=79.64 Aligned_cols=46 Identities=24% Similarity=0.728 Sum_probs=39.9
Q ss_pred CCCCCCCcceecccCCcCeEEeCCCCccccHHHHHHHHh---CCCCCccc
Q 016892 318 EDSDPGKECVICMTEPKDTAVLPCRHMCMCGECAKELRL---QSNKCPIC 364 (381)
Q Consensus 318 ~~~~~~~~CvICl~~~~d~vlLPCgH~cfC~~Ca~~l~~---~s~~CPiC 364 (381)
+...+...|.||++...+.++++|||. ||..|+..|+. ....||+|
T Consensus 10 ~~~~~~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 10 ENLQVEASCSVCLEYLKEPVIIECGHN-FCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp SCSCCCCBCSSSCCBCSSCCCCSSCCC-CCHHHHHHHTTSSCCSCCCSCC
T ss_pred hccccCCCCccCCcccCccEeCCCCCc-cCHHHHHHHHHhcCCCCCCCCC
Confidence 445667899999999999999999999 99999999943 45689998
No 34
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.86 E-value=3.4e-10 Score=112.09 Aligned_cols=52 Identities=35% Similarity=0.885 Sum_probs=47.1
Q ss_pred CCCCcceecccCCcCeEEeCCCCccccHHHHHHHHhCCCCCccccccccceEEEEc
Q 016892 321 DPGKECVICMTEPKDTAVLPCRHMCMCGECAKELRLQSNKCPICRQPIEELIEIKI 376 (381)
Q Consensus 321 ~~~~~CvICl~~~~d~vlLPCgH~cfC~~Ca~~l~~~s~~CPiCR~~I~~~i~I~i 376 (381)
+++..|.||++.+.+++++||||.|||..|+..| ..||+||..|...++|++
T Consensus 293 ~~~~~C~IC~~~~~~~v~lpCgH~~fC~~C~~~~----~~CP~CR~~i~~~~~i~~ 344 (345)
T 3t6p_A 293 QEERTCKVCMDKEVSVVFIPCGHLVVCQECAPSL----RKCPICRGIIKGTVRTFL 344 (345)
T ss_dssp HTTCBCTTTSSSBCCEEEETTCCEEECTTTGGGC----SBCTTTCCBCCEEEECC-
T ss_pred cCCCCCCccCCcCCceEEcCCCChhHhHHHHhcC----CcCCCCCCCccCeEEeec
Confidence 3567999999999999999999999999999977 589999999999998875
No 35
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=98.84 E-value=1.2e-09 Score=90.42 Aligned_cols=48 Identities=25% Similarity=0.531 Sum_probs=39.6
Q ss_pred CCcceecccCCcCe------------------EEeCCCCccccHHHHHHHH-----hCCCCCccccccccce
Q 016892 323 GKECVICMTEPKDT------------------AVLPCRHMCMCGECAKELR-----LQSNKCPICRQPIEEL 371 (381)
Q Consensus 323 ~~~CvICl~~~~d~------------------vlLPCgH~cfC~~Ca~~l~-----~~s~~CPiCR~~I~~~ 371 (381)
+.+|.||++.+.+. .+++|+|. ||..|+..|+ .....||+||+.+...
T Consensus 25 ~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~-Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~ 95 (114)
T 1v87_A 25 EEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHA-FHLLCLLAMYCNGNKDGSLQCPSCKTIYGEK 95 (114)
T ss_dssp SCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCE-ECHHHHHHHHHHTCCSSCCBCTTTCCBSSSC
T ss_pred CCcCccCChhhcCcccccccccccccCcccceecCCCCCc-ccHHHHHHHHHcccCCCCCcCCCCCCccCCC
Confidence 45899999987543 37899999 9999999998 4466899999988654
No 36
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=98.83 E-value=1.5e-09 Score=89.44 Aligned_cols=49 Identities=29% Similarity=0.659 Sum_probs=44.9
Q ss_pred CCCCcceecccCCcCeEEe-CCCCccccHHHHHHHHhCCCCCccccccccc
Q 016892 321 DPGKECVICMTEPKDTAVL-PCRHMCMCGECAKELRLQSNKCPICRQPIEE 370 (381)
Q Consensus 321 ~~~~~CvICl~~~~d~vlL-PCgH~cfC~~Ca~~l~~~s~~CPiCR~~I~~ 370 (381)
.+...|.||++.+.+.+.+ +|||. ||..|+..|+..+..||+||..+..
T Consensus 13 ~~~~~C~IC~~~~~~p~~~~~CgH~-fC~~Ci~~~~~~~~~CP~Cr~~~~~ 62 (108)
T 2ckl_A 13 NPHLMCVLCGGYFIDATTIIECLHS-FCKTCIVRYLETSKYCPICDVQVHK 62 (108)
T ss_dssp GGGTBCTTTSSBCSSEEEETTTCCE-EEHHHHHHHHTSCSBCTTTCCBSCS
T ss_pred CCcCCCccCChHHhCcCEeCCCCCh-hhHHHHHHHHHhCCcCcCCCccccc
Confidence 3467999999999999998 99999 9999999999888899999999875
No 37
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=98.83 E-value=1.2e-09 Score=89.09 Aligned_cols=48 Identities=27% Similarity=0.726 Sum_probs=43.5
Q ss_pred CCCcceecccCCcCeEE-eCCCCccccHHHHHHHHhCC-CCCccccccccc
Q 016892 322 PGKECVICMTEPKDTAV-LPCRHMCMCGECAKELRLQS-NKCPICRQPIEE 370 (381)
Q Consensus 322 ~~~~CvICl~~~~d~vl-LPCgH~cfC~~Ca~~l~~~s-~~CPiCR~~I~~ 370 (381)
+...|.||++.+.+.++ ++|||. ||..|+..|+... ..||+||..+..
T Consensus 21 ~~~~C~IC~~~~~~p~~~~~CgH~-FC~~Ci~~~~~~~~~~CP~Cr~~~~~ 70 (100)
T 3lrq_A 21 EVFRCFICMEKLRDARLCPHCSKL-CCFSCIRRWLTEQRAQCPHCRAPLQL 70 (100)
T ss_dssp HHTBCTTTCSBCSSEEECTTTCCE-EEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred CCCCCccCCccccCccccCCCCCh-hhHHHHHHHHHHCcCCCCCCCCcCCH
Confidence 45699999999999999 999999 9999999998876 689999999864
No 38
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.83 E-value=1.4e-09 Score=108.91 Aligned_cols=55 Identities=31% Similarity=0.722 Sum_probs=49.3
Q ss_pred CCCcceecccCCcCeEEeCCCCccccHHHHHHHHh-CCCCCccccccccceEEEEcC
Q 016892 322 PGKECVICMTEPKDTAVLPCRHMCMCGECAKELRL-QSNKCPICRQPIEELIEIKIN 377 (381)
Q Consensus 322 ~~~~CvICl~~~~d~vlLPCgH~cfC~~Ca~~l~~-~s~~CPiCR~~I~~~i~I~i~ 377 (381)
...+|.||++...++++++|||. ||..|+..|.. ....||+||+.|.....|.+.
T Consensus 331 ~~~~C~ICle~~~~pv~lpCGH~-FC~~Ci~~wl~~~~~~CP~CR~~i~~~~~i~v~ 386 (389)
T 2y1n_A 331 TFQLCKICAENDKDVKIEPCGHL-MCTSCLTSWQESEGQGCPFCRCEIKGTEPIVVD 386 (389)
T ss_dssp SSSBCTTTSSSBCCEEEETTCCE-ECHHHHHHHHHHTCSBCTTTCCBCCEEEECSCC
T ss_pred CCCCCCccCcCCCCeEEeCCCCh-hhHHHHHHHHhcCCCCCCCCCCccCCceeEecC
Confidence 34799999999999999999999 99999999987 678999999999998777654
No 39
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.82 E-value=2.1e-09 Score=84.46 Aligned_cols=48 Identities=29% Similarity=0.609 Sum_probs=40.3
Q ss_pred CCCcceecccCCcC--------------eEEe-CCCCccccHHHHHHHHhCCCCCccccccccc
Q 016892 322 PGKECVICMTEPKD--------------TAVL-PCRHMCMCGECAKELRLQSNKCPICRQPIEE 370 (381)
Q Consensus 322 ~~~~CvICl~~~~d--------------~vlL-PCgH~cfC~~Ca~~l~~~s~~CPiCR~~I~~ 370 (381)
++..|.||++.+.+ .+++ .|+|. ||..|+..|+.++..||+||+.+..
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~-FH~~Ci~~Wl~~~~~CP~CR~~~~~ 76 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHS-FHNCCMSLWVKQNNRCPLCQQDWVV 76 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCE-EEHHHHHHHTTTCCBCTTTCCBCCE
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCc-cChHHHHHHHHhCCCCCCcCCCcch
Confidence 45679999988765 4455 59999 9999999999988999999998764
No 40
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=98.82 E-value=1.8e-09 Score=90.98 Aligned_cols=48 Identities=21% Similarity=0.524 Sum_probs=43.0
Q ss_pred CCCcceecccCCcCeEEeCCCCccccHHHHHHHHhCC-CCCccccccccc
Q 016892 322 PGKECVICMTEPKDTAVLPCRHMCMCGECAKELRLQS-NKCPICRQPIEE 370 (381)
Q Consensus 322 ~~~~CvICl~~~~d~vlLPCgH~cfC~~Ca~~l~~~s-~~CPiCR~~I~~ 370 (381)
+...|.||++.+.+.++++|||. ||..|+..|+... ..||+||..+..
T Consensus 51 ~~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 51 ETFQCICCQELVFRPITTVCQHN-VCKDCLDRSFRAQVFSCPACRYDLGR 99 (124)
T ss_dssp HHTBCTTTSSBCSSEEECTTSCE-EEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred cCCCCCcCChHHcCcEEeeCCCc-ccHHHHHHHHhHCcCCCCCCCccCCC
Confidence 45689999999999999999999 9999999988744 489999999976
No 41
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=98.81 E-value=2.4e-09 Score=86.75 Aligned_cols=48 Identities=23% Similarity=0.585 Sum_probs=44.0
Q ss_pred CCCcceecccCCcCeEEe-CCCCccccHHHHHHHHhCCCCCccccccccc
Q 016892 322 PGKECVICMTEPKDTAVL-PCRHMCMCGECAKELRLQSNKCPICRQPIEE 370 (381)
Q Consensus 322 ~~~~CvICl~~~~d~vlL-PCgH~cfC~~Ca~~l~~~s~~CPiCR~~I~~ 370 (381)
+...|.||++.+.+.+++ +|||. ||..|+..|......||+||..+..
T Consensus 21 ~~~~C~IC~~~~~~p~~~~~CgH~-fC~~Ci~~~~~~~~~CP~Cr~~~~~ 69 (99)
T 2y43_A 21 DLLRCGICFEYFNIAMIIPQCSHN-YCSLCIRKFLSYKTQCPTCCVTVTE 69 (99)
T ss_dssp HHTBCTTTCSBCSSEEECTTTCCE-EEHHHHHHHHTTCCBCTTTCCBCCG
T ss_pred CCCCcccCChhhCCcCEECCCCCH-hhHHHHHHHHHCCCCCCCCCCcCCh
Confidence 356899999999999988 89999 9999999999888899999998875
No 42
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.80 E-value=6.5e-10 Score=81.45 Aligned_cols=47 Identities=32% Similarity=0.732 Sum_probs=40.8
Q ss_pred CCCCCcceecccCCcCeEEeCCCCccccHHHHHHHHhCCCCCccccccccc
Q 016892 320 SDPGKECVICMTEPKDTAVLPCRHMCMCGECAKELRLQSNKCPICRQPIEE 370 (381)
Q Consensus 320 ~~~~~~CvICl~~~~d~vlLPCgH~cfC~~Ca~~l~~~s~~CPiCR~~I~~ 370 (381)
+.+...|.||++.+.+.++|+|||. ||..|+.. ....||+||+.+..
T Consensus 3 e~~~~~C~IC~~~~~~p~~l~CgH~-fC~~Ci~~---~~~~CP~Cr~~~~~ 49 (56)
T 1bor_A 3 EFQFLRCQQCQAEAKCPKLLPCLHT-LCSGCLEA---SGMQCPICQAPWPL 49 (56)
T ss_dssp SCCCSSCSSSCSSCBCCSCSTTSCC-SBTTTCSS---SSSSCSSCCSSSSC
T ss_pred cccCCCceEeCCccCCeEEcCCCCc-ccHHHHcc---CCCCCCcCCcEeec
Confidence 3567889999999999999999999 99999876 35689999998763
No 43
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.79 E-value=2.4e-09 Score=89.84 Aligned_cols=51 Identities=27% Similarity=0.694 Sum_probs=45.4
Q ss_pred CCCCcceecccCCcCe-------EEeCCCCccccHHHHHHHHhCCCCCccccccccceE
Q 016892 321 DPGKECVICMTEPKDT-------AVLPCRHMCMCGECAKELRLQSNKCPICRQPIEELI 372 (381)
Q Consensus 321 ~~~~~CvICl~~~~d~-------vlLPCgH~cfC~~Ca~~l~~~s~~CPiCR~~I~~~i 372 (381)
.+..+|.||++.+.+. ++++|||. ||..|+..|+.....||+||+.+...-
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~-fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 62 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVSTECGHV-FCSQCLRDSLKNANTCPTCRKKINHKR 62 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEETTCCE-EEHHHHHHHHTTCSBCTTTCCBCTTTC
T ss_pred CCCCCCcccChhhhCccccccCeEecCCCCh-hhHHHHHHHHHhCCCCCCCCCcCcccc
Confidence 3567999999998877 89999999 999999999988889999999998543
No 44
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.79 E-value=2e-09 Score=80.52 Aligned_cols=48 Identities=27% Similarity=0.721 Sum_probs=39.1
Q ss_pred CCcceeccc-CCcCe----EEeCCCCccccHHHHHHHHhC-CCCCccccccccce
Q 016892 323 GKECVICMT-EPKDT----AVLPCRHMCMCGECAKELRLQ-SNKCPICRQPIEEL 371 (381)
Q Consensus 323 ~~~CvICl~-~~~d~----vlLPCgH~cfC~~Ca~~l~~~-s~~CPiCR~~I~~~ 371 (381)
+..|.||++ ...+. ++++|||. ||..|+..|+.+ ...||+||..+...
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 56 (65)
T 1g25_A 3 DQGCPRCKTTKYRNPSLKLMVNVCGHT-LCESCVDLLFVRGAGNCPECGTPLRKS 56 (65)
T ss_dssp TTCCSTTTTHHHHCSSCCEEECTTCCC-EEHHHHHHHHHTTSSSCTTTCCCCSSC
T ss_pred CCcCCcCCCCccCCCccCeecCCCCCH-hHHHHHHHHHHcCCCcCCCCCCccccc
Confidence 568999999 55444 56899999 999999998554 46799999998753
No 45
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=98.78 E-value=2.7e-09 Score=87.60 Aligned_cols=52 Identities=23% Similarity=0.156 Sum_probs=46.9
Q ss_pred CCCCCCCcceecccCCcCeEEeCCCCccccHHHHHHHHhCCCCCccccccccc
Q 016892 318 EDSDPGKECVICMTEPKDTAVLPCRHMCMCGECAKELRLQSNKCPICRQPIEE 370 (381)
Q Consensus 318 ~~~~~~~~CvICl~~~~d~vlLPCgH~cfC~~Ca~~l~~~s~~CPiCR~~I~~ 370 (381)
.+..+...|.||++.++|.|+++|||. ||..|+..|+.....||+||..+..
T Consensus 24 ~~~p~~~~CpI~~~~m~dPV~~~cGht-f~r~~I~~~l~~~~~cP~~~~~l~~ 75 (100)
T 2kre_A 24 SDAPDEFRDPLMDTLMTDPVRLPSGTI-MDRSIILRHLLNSPTDPFNRQTLTE 75 (100)
T ss_dssp SSCSTTTBCTTTCSBCSSEEEETTTEE-EEHHHHHHHTTSCSBCSSSCCBCCT
T ss_pred ccCcHhhCCcCccCcccCCeECCCCCE-EchHHHHHHHHcCCCCCCCCCCCCh
Confidence 344568899999999999999999999 9999999999877899999998875
No 46
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=98.76 E-value=6.1e-09 Score=82.80 Aligned_cols=52 Identities=23% Similarity=0.120 Sum_probs=46.8
Q ss_pred CCCCCCcceecccCCcCeEEeCCCCccccHHHHHHHHhCCCCCccccccccce
Q 016892 319 DSDPGKECVICMTEPKDTAVLPCRHMCMCGECAKELRLQSNKCPICRQPIEEL 371 (381)
Q Consensus 319 ~~~~~~~CvICl~~~~d~vlLPCgH~cfC~~Ca~~l~~~s~~CPiCR~~I~~~ 371 (381)
...+...|.||++.++|.|+++|||. ||..|+..|+.....||+||..+...
T Consensus 10 ~~p~~~~CpI~~~~m~dPV~~~cGht-f~r~~I~~~l~~~~~cP~~~~~l~~~ 61 (85)
T 2kr4_A 10 DAPDEFRDPLMDTLMTDPVRLPSGTV-MDRSIILRHLLNSPTDPFNRQMLTES 61 (85)
T ss_dssp TCCTTTBCTTTCSBCSSEEECTTSCE-EEHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred cCchheECcccCchhcCCeECCCCCE-ECHHHHHHHHhcCCCCCCCcCCCChH
Confidence 44568899999999999999999999 99999999988778999999988753
No 47
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=98.76 E-value=8.6e-10 Score=91.73 Aligned_cols=50 Identities=32% Similarity=0.703 Sum_probs=43.8
Q ss_pred CCCCCcceecccCCcCeEEeCCCCccccHHHHHHHHhC-CCCCccccccccc
Q 016892 320 SDPGKECVICMTEPKDTAVLPCRHMCMCGECAKELRLQ-SNKCPICRQPIEE 370 (381)
Q Consensus 320 ~~~~~~CvICl~~~~d~vlLPCgH~cfC~~Ca~~l~~~-s~~CPiCR~~I~~ 370 (381)
..++..|.||++.+.+.++++|||. ||..|+..|... ...||+||..+..
T Consensus 12 ~~~~~~C~iC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 12 SLSECQCGICMEILVEPVTLPCNHT-LCKPCFQSTVEKASLCCPFCRRRVSS 62 (115)
T ss_dssp CHHHHBCTTTCSBCSSCEECTTSCE-ECHHHHCCCCCTTTSBCTTTCCBCHH
T ss_pred CCCCCCCccCCcccCceeEcCCCCH-HhHHHHHHHHhHCcCCCCCCCcccCc
Confidence 3456789999999999999999999 999999998765 5689999998863
No 48
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=98.75 E-value=1.1e-09 Score=96.69 Aligned_cols=49 Identities=27% Similarity=0.664 Sum_probs=43.5
Q ss_pred CCCCcceecccCCcCeEEe-CCCCccccHHHHHHHHhC-CCCCccccccccc
Q 016892 321 DPGKECVICMTEPKDTAVL-PCRHMCMCGECAKELRLQ-SNKCPICRQPIEE 370 (381)
Q Consensus 321 ~~~~~CvICl~~~~d~vlL-PCgH~cfC~~Ca~~l~~~-s~~CPiCR~~I~~ 370 (381)
.+...|.||++.+.+.+.+ +|||. ||..|+..|+.. ...||+||..+..
T Consensus 52 ~~~~~C~IC~~~~~~p~~~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 102 (165)
T 2ckl_B 52 HSELMCPICLDMLKNTMTTKECLHR-FCADCIITALRSGNKECPTCRKKLVS 102 (165)
T ss_dssp HHHHBCTTTSSBCSSEEEETTTCCE-EEHHHHHHHHHTTCCBCTTTCCBCCS
T ss_pred CCCCCCcccChHhhCcCEeCCCCCh-hHHHHHHHHHHhCcCCCCCCCCcCCC
Confidence 4567999999999999988 99999 999999999876 6789999999854
No 49
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=98.75 E-value=2.8e-09 Score=89.26 Aligned_cols=52 Identities=25% Similarity=0.585 Sum_probs=45.7
Q ss_pred CCCCCCcceecccCCcCeEEeCCCCccccHHHHHHHHhCCC-CCccccccccce
Q 016892 319 DSDPGKECVICMTEPKDTAVLPCRHMCMCGECAKELRLQSN-KCPICRQPIEEL 371 (381)
Q Consensus 319 ~~~~~~~CvICl~~~~d~vlLPCgH~cfC~~Ca~~l~~~s~-~CPiCR~~I~~~ 371 (381)
..++...|.||++.+.+.++++|||. ||..|+..|+..+. .||+||..+...
T Consensus 14 ~~~~~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 66 (118)
T 3hct_A 14 PLESKYECPICLMALREAVQTPCGHR-FCKACIIKSIRDAGHKCPVDNEILLEN 66 (118)
T ss_dssp CCCGGGBCTTTCSBCSSEEECTTSCE-EEHHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred CCCCCCCCCcCChhhcCeEECCcCCh-hhHHHHHHHHhhCCCCCCCCCCCcCHH
Confidence 34567899999999999999999999 99999999887655 899999998763
No 50
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.75 E-value=3e-09 Score=87.45 Aligned_cols=47 Identities=32% Similarity=0.748 Sum_probs=42.1
Q ss_pred CCcceecccCCcCeEEeCCCCccccHHHHHHHHhCCC---CCccccccccc
Q 016892 323 GKECVICMTEPKDTAVLPCRHMCMCGECAKELRLQSN---KCPICRQPIEE 370 (381)
Q Consensus 323 ~~~CvICl~~~~d~vlLPCgH~cfC~~Ca~~l~~~s~---~CPiCR~~I~~ 370 (381)
...|.||++.+.+.++++|||. ||..|+..|..... .||+||..+..
T Consensus 21 ~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 70 (112)
T 1jm7_A 21 ILECPICLELIKEPVSTKCDHI-FCKFCMLKLLNQKKGPSQCPLCKNDITK 70 (112)
T ss_dssp HTSCSSSCCCCSSCCBCTTSCC-CCSHHHHHHHHSSSSSCCCTTTSCCCCT
T ss_pred CCCCcccChhhcCeEECCCCCH-HHHHHHHHHHHhCCCCCCCcCCCCcCCH
Confidence 4589999999999999999999 99999999987653 89999998875
No 51
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=98.74 E-value=3.7e-09 Score=83.02 Aligned_cols=52 Identities=31% Similarity=0.728 Sum_probs=42.3
Q ss_pred CCCCCcceecccCC--cCeEEeC--CCCccccHHHHHHHHh-CCCCCccccccccceE
Q 016892 320 SDPGKECVICMTEP--KDTAVLP--CRHMCMCGECAKELRL-QSNKCPICRQPIEELI 372 (381)
Q Consensus 320 ~~~~~~CvICl~~~--~d~vlLP--CgH~cfC~~Ca~~l~~-~s~~CPiCR~~I~~~i 372 (381)
.+++..|.||++.. .+.++++ |||. ||..|+..++. ....||+||..+....
T Consensus 8 ~~~~~~CpICle~~~~~d~~~~p~~CGH~-fC~~Cl~~~~~~~~~~CP~CR~~~~~~~ 64 (78)
T 1e4u_A 8 KEDPVECPLCMEPLEIDDINFFPCTCGYQ-ICRFCWHRIRTDENGLCPACRKPYPEDP 64 (78)
T ss_dssp CCCCCBCTTTCCBCCTTTTTCCSSTTSCC-CCHHHHHHHTTSSCSBCTTTCCBCSSCS
T ss_pred cccCCcCCccCccCccccccccccCCCCC-cCHHHHHHHHhcCCCCCCCCCCccCCCc
Confidence 45678999999987 4566766 9999 99999999764 3468999999998643
No 52
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=98.74 E-value=4.6e-09 Score=92.12 Aligned_cols=49 Identities=22% Similarity=0.524 Sum_probs=43.8
Q ss_pred CCCcceecccCCcCeEEeCCCCccccHHHHHHHHhCCC-CCccccccccce
Q 016892 322 PGKECVICMTEPKDTAVLPCRHMCMCGECAKELRLQSN-KCPICRQPIEEL 371 (381)
Q Consensus 322 ~~~~CvICl~~~~d~vlLPCgH~cfC~~Ca~~l~~~s~-~CPiCR~~I~~~ 371 (381)
+...|.||++.+.+.++++|||. ||..|+..|+.... .||+||..+...
T Consensus 77 ~~~~C~IC~~~~~~pv~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 77 QSFMCVCCQELVYQPVTTECFHN-VCKDCLQRSFKAQVFSCPACRHDLGQN 126 (150)
T ss_dssp HHTBCTTTSSBCSSEEECTTSCE-EEHHHHHHHHHTTCCBCTTTCCBCCTT
T ss_pred cCCEeecCChhhcCCEEcCCCCc-hhHHHHHHHHHhCCCcCCCCCccCCCC
Confidence 35689999999999999999999 99999999887654 799999998864
No 53
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=98.69 E-value=1.7e-08 Score=82.48 Aligned_cols=50 Identities=20% Similarity=0.090 Sum_probs=45.8
Q ss_pred CCCCCcceecccCCcCeEEeCCC-CccccHHHHHHHHhCCCCCccccccccc
Q 016892 320 SDPGKECVICMTEPKDTAVLPCR-HMCMCGECAKELRLQSNKCPICRQPIEE 370 (381)
Q Consensus 320 ~~~~~~CvICl~~~~d~vlLPCg-H~cfC~~Ca~~l~~~s~~CPiCR~~I~~ 370 (381)
..+...|.||++.++|.|+++|| |. ||..|+..|+.....||+||..+..
T Consensus 19 ~p~~~~CpI~~~~m~dPV~~~cG~ht-f~r~cI~~~l~~~~~cP~~~~~l~~ 69 (98)
T 1wgm_A 19 ACDEFLDPIMSTLMCDPVVLPSSRVT-VDRSTIARHLLSDQTDPFNRSPLTM 69 (98)
T ss_dssp CCTTTBCTTTCSBCSSEEECTTTCCE-EEHHHHHHHTTTSCBCTTTCSBCCT
T ss_pred CcHhcCCcCccccccCCeECCCCCeE-ECHHHHHHHHHhCCCCCCCCCCCCh
Confidence 35678999999999999999999 99 9999999999877899999998875
No 54
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=98.67 E-value=1.5e-08 Score=84.15 Aligned_cols=46 Identities=24% Similarity=0.413 Sum_probs=39.3
Q ss_pred CCcceecccCCcCe------------------EEeCCCCccccHHHHHHHHhCCCCCcccccccc
Q 016892 323 GKECVICMTEPKDT------------------AVLPCRHMCMCGECAKELRLQSNKCPICRQPIE 369 (381)
Q Consensus 323 ~~~CvICl~~~~d~------------------vlLPCgH~cfC~~Ca~~l~~~s~~CPiCR~~I~ 369 (381)
+..|.||++.+.+. ++++|+|. ||..|+..|+.++..||+||+.+.
T Consensus 37 ~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~-FH~~Ci~~Wl~~~~~CP~Cr~~~~ 100 (106)
T 3dpl_R 37 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHA-FHFHCISRWLKTRQVCPLDNREWE 100 (106)
T ss_dssp SCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCE-EEHHHHHHHHTTCSBCSSSCSBCC
T ss_pred CCCCccCChhHhCcCchhhccccccCCccceEeecccCcE-ECHHHHHHHHHcCCcCcCCCCcce
Confidence 45799998877643 56799999 999999999998899999999864
No 55
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=98.61 E-value=1.5e-08 Score=84.27 Aligned_cols=48 Identities=27% Similarity=0.591 Sum_probs=43.5
Q ss_pred CCCcceecccCCcCeEEeCCCCccccHHHHHHHHhC-CCCCccccccccc
Q 016892 322 PGKECVICMTEPKDTAVLPCRHMCMCGECAKELRLQ-SNKCPICRQPIEE 370 (381)
Q Consensus 322 ~~~~CvICl~~~~d~vlLPCgH~cfC~~Ca~~l~~~-s~~CPiCR~~I~~ 370 (381)
+...|.||++.+.+.+.++|||. ||..|+..|+.. ...||+||..+..
T Consensus 22 ~~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 70 (116)
T 1rmd_A 22 KSISCQICEHILADPVETSCKHL-FCRICILRCLKVMGSYCPSCRYPCFP 70 (116)
T ss_dssp HHTBCTTTCSBCSSEEECTTSCE-EEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred CCCCCCCCCcHhcCcEEcCCCCc-ccHHHHHHHHhHCcCcCCCCCCCCCH
Confidence 45789999999999999999999 999999998875 6789999999875
No 56
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.57 E-value=1.4e-08 Score=85.15 Aligned_cols=50 Identities=28% Similarity=0.723 Sum_probs=44.4
Q ss_pred CCCCcceecccCCcCe-------EEeCCCCccccHHHHHHHHhCCCCCccccccccce
Q 016892 321 DPGKECVICMTEPKDT-------AVLPCRHMCMCGECAKELRLQSNKCPICRQPIEEL 371 (381)
Q Consensus 321 ~~~~~CvICl~~~~d~-------vlLPCgH~cfC~~Ca~~l~~~s~~CPiCR~~I~~~ 371 (381)
++...|.||++...+. ++++|||. ||..|+..|+..+..||+||..+...
T Consensus 70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~-fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 126 (133)
T 4ap4_A 70 SGTVSCPICMDGYSEIVQNGRLIVSTECGHV-FCSQCLRDSLKNANTCPTCRKKINHK 126 (133)
T ss_dssp SSSCBCTTTCCBHHHHHHTTCCEEEETTSBE-EEHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred CCCCCCCCCCCccccccccCcceEeCCCCCh-hhHHHHHHHHHcCCCCCCCCCcCChh
Confidence 4567899999988765 88899999 99999999999889999999999854
No 57
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=98.57 E-value=1.1e-08 Score=88.77 Aligned_cols=48 Identities=17% Similarity=0.393 Sum_probs=42.8
Q ss_pred CCCCCcceecccCCcCeEEeCCCCccccHHHHHHHHhCCC-CCccccccc
Q 016892 320 SDPGKECVICMTEPKDTAVLPCRHMCMCGECAKELRLQSN-KCPICRQPI 368 (381)
Q Consensus 320 ~~~~~~CvICl~~~~d~vlLPCgH~cfC~~Ca~~l~~~s~-~CPiCR~~I 368 (381)
.++...|.||++.+.+.+.++|||. ||..|+..|+.... .||+||..+
T Consensus 28 l~~~~~C~IC~~~~~~pv~~~CgH~-FC~~Ci~~~~~~~~~~CP~Cr~~~ 76 (141)
T 3knv_A 28 LEAKYLCSACRNVLRRPFQAQCGHR-YCSFCLASILSSGPQNCAACVHEG 76 (141)
T ss_dssp CCGGGBCTTTCSBCSSEEECTTSCE-EEHHHHHHHGGGSCEECHHHHHTT
T ss_pred CCcCcCCCCCChhhcCcEECCCCCc-cCHHHHHHHHhcCCCCCCCCCCcc
Confidence 3567899999999999999999999 99999999987554 899999975
No 58
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.53 E-value=4.3e-08 Score=92.04 Aligned_cols=67 Identities=12% Similarity=0.130 Sum_probs=50.6
Q ss_pred hhHHHhhCCCCCCCCCCCCCCCCcceecccCCcCeEEeCCCCccccHHHHHHHHhCC-CCCccccccccc
Q 016892 302 ELREIYGIGNSAAEGFEDSDPGKECVICMTEPKDTAVLPCRHMCMCGECAKELRLQS-NKCPICRQPIEE 370 (381)
Q Consensus 302 el~ei~g~~~s~~~~~~~~~~~~~CvICl~~~~d~vlLPCgH~cfC~~Ca~~l~~~s-~~CPiCR~~I~~ 370 (381)
++.++|....... ...+......|.||++.+.|.|+++|||. ||..|+..|+..+ ..||+||..+..
T Consensus 188 ~a~~~f~~a~~~~-~~~~~~~~~~c~i~~~~~~dPv~~~~gh~-f~~~~i~~~~~~~~~~cP~~~~~~~~ 255 (281)
T 2c2l_A 188 DMDELFSQVDEKR-KKRDIPDYLCGKISFELMREPCITPSGIT-YDRKDIEEHLQRVGHFNPVTRSPLTQ 255 (281)
T ss_dssp HHHHHHHHSSCTT-SCCCCCSTTBCTTTCSBCSSEEECSSCCE-EETTHHHHHHHHTCSSCTTTCCCCCG
T ss_pred HHHHHHHhhhccc-cCCCCCcccCCcCcCCHhcCCeECCCCCE-ECHHHHHHHHHHCCCCCcCCCCCCch
Confidence 4555554333221 12234567899999999999999999999 9999999988754 349999999874
No 59
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.51 E-value=4.3e-08 Score=77.37 Aligned_cols=53 Identities=21% Similarity=0.506 Sum_probs=42.6
Q ss_pred CCCCCcceecccCC--cCeEEeCCC-----CccccHHHHHHHHhCC--CCCccccccccceEE
Q 016892 320 SDPGKECVICMTEP--KDTAVLPCR-----HMCMCGECAKELRLQS--NKCPICRQPIEELIE 373 (381)
Q Consensus 320 ~~~~~~CvICl~~~--~d~vlLPCg-----H~cfC~~Ca~~l~~~s--~~CPiCR~~I~~~i~ 373 (381)
..++..|.||++++ .+.+++||+ |. |+..|+++|+..+ ..||+||..+....+
T Consensus 12 ~~~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~-fH~~Cl~~Wl~~~~~~~CplCr~~~~~~~~ 73 (80)
T 2d8s_A 12 PSSQDICRICHCEGDDESPLITPCHCTGSLHF-VHQACLQQWIKSSDTRCCELCKYEFIMETK 73 (80)
T ss_dssp CTTSCCCSSSCCCCCSSSCEECSSSCCSSSCC-EETTHHHHHHHHHCCSBCSSSCCBCCCCCC
T ss_pred CCCCCCCeEcCccccCCCeeEeccccCCcCCe-eCHHHHHHHHhhCCCCCCCCCCCeeecCcc
Confidence 34567999999876 456788996 99 9999999998765 489999999865443
No 60
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.48 E-value=1.6e-08 Score=84.42 Aligned_cols=45 Identities=24% Similarity=0.671 Sum_probs=41.0
Q ss_pred CCCcceecccCCcCeEEe-CCCCccccHHHHHHHHhCCCCCcccccccc
Q 016892 322 PGKECVICMTEPKDTAVL-PCRHMCMCGECAKELRLQSNKCPICRQPIE 369 (381)
Q Consensus 322 ~~~~CvICl~~~~d~vlL-PCgH~cfC~~Ca~~l~~~s~~CPiCR~~I~ 369 (381)
+...|.||++.+.+.+++ +|||. ||..|+..|+. ..||+||..+.
T Consensus 21 ~~~~C~IC~~~~~~pv~~~~CgH~-fC~~Ci~~~~~--~~CP~Cr~~~~ 66 (117)
T 1jm7_B 21 KLLRCSRCTNILREPVCLGGCEHI-FCSNCVSDCIG--TGCPVCYTPAW 66 (117)
T ss_dssp HTTSCSSSCSCCSSCBCCCSSSCC-BCTTTGGGGTT--TBCSSSCCBCS
T ss_pred hCCCCCCCChHhhCccEeCCCCCH-HHHHHHHHHhc--CCCcCCCCcCc
Confidence 457999999999999999 99999 99999999875 68999999885
No 61
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.44 E-value=6.5e-08 Score=85.66 Aligned_cols=51 Identities=25% Similarity=0.621 Sum_probs=45.0
Q ss_pred CCCCCCcceecccCCcCeEEeCCCCccccHHHHHHHHhCC-CCCccccccccc
Q 016892 319 DSDPGKECVICMTEPKDTAVLPCRHMCMCGECAKELRLQS-NKCPICRQPIEE 370 (381)
Q Consensus 319 ~~~~~~~CvICl~~~~d~vlLPCgH~cfC~~Ca~~l~~~s-~~CPiCR~~I~~ 370 (381)
..++...|.||++.+.+.+.++|||. ||..|+..|+..+ .+||+||..+..
T Consensus 14 ~~~~~~~C~IC~~~~~~pv~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 65 (170)
T 3hcs_A 14 PLESKYECPICLMALREAVQTPCGHR-FCKACIIKSIRDAGHKCPVDNEILLE 65 (170)
T ss_dssp CCCGGGBCTTTCSBCSSEEECTTSCE-EEHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred CCCCCCCCCCCChhhcCcEECCCCCH-HHHHHHHHHHHhCCCCCCCCccCcch
Confidence 34567899999999999999999999 9999999987654 489999999876
No 62
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=98.36 E-value=5.9e-08 Score=82.02 Aligned_cols=46 Identities=24% Similarity=0.413 Sum_probs=0.5
Q ss_pred CCcceecccCCcCe------------------EEeCCCCccccHHHHHHHHhCCCCCcccccccc
Q 016892 323 GKECVICMTEPKDT------------------AVLPCRHMCMCGECAKELRLQSNKCPICRQPIE 369 (381)
Q Consensus 323 ~~~CvICl~~~~d~------------------vlLPCgH~cfC~~Ca~~l~~~s~~CPiCR~~I~ 369 (381)
+..|.||++.+.+. ++++|+|. ||..|+..|+..+..||+||+.+.
T Consensus 48 ~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~-FH~~CI~~Wl~~~~~CP~Cr~~~~ 111 (117)
T 4a0k_B 48 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHA-FHFHCISRWLKTRQVCPLDNREWE 111 (117)
T ss_dssp C----------------------------------------------------------------
T ss_pred CCcCeECChhhcCcChhhhcccccccccccccccCCcCce-EcHHHHHHHHHcCCcCCCCCCeee
Confidence 45899999887652 23589999 999999999988889999999853
No 63
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=98.25 E-value=2.6e-07 Score=83.49 Aligned_cols=52 Identities=12% Similarity=0.060 Sum_probs=45.2
Q ss_pred CCCCCCcceecccCCcCeEEeCCCCccccHHHHHHHHhCC-CCCccccccccce
Q 016892 319 DSDPGKECVICMTEPKDTAVLPCRHMCMCGECAKELRLQS-NKCPICRQPIEEL 371 (381)
Q Consensus 319 ~~~~~~~CvICl~~~~d~vlLPCgH~cfC~~Ca~~l~~~s-~~CPiCR~~I~~~ 371 (381)
+..+...|.||++-+.|.|+++|||. ||..|+..|+... ..||+||..+...
T Consensus 102 ~ip~~f~CPI~~elm~DPV~~~~Ght-fer~~I~~~l~~~~~tcP~t~~~l~~~ 154 (179)
T 2f42_A 102 EIPDYLCGKISFELMREPCITPSGIT-YDRKDIEEHLQRVGHFDPVTRSPLTQD 154 (179)
T ss_dssp CCCGGGBCTTTCSBCSSEEECTTSCE-EEHHHHHHHHHHTCSBCTTTCCBCCGG
T ss_pred CCcHhhcccCccccCCCCeECCCCCE-ECHHHHHHHHHhCCCCCCCCcCCCChh
Confidence 34577899999999999999999999 9999999988654 4699999988753
No 64
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.23 E-value=6e-07 Score=72.33 Aligned_cols=46 Identities=22% Similarity=0.390 Sum_probs=40.2
Q ss_pred CCCCcceecccCCcCeEEeC-CCCccccHHHHHHHHhCC------CCCcc--cccc
Q 016892 321 DPGKECVICMTEPKDTAVLP-CRHMCMCGECAKELRLQS------NKCPI--CRQP 367 (381)
Q Consensus 321 ~~~~~CvICl~~~~d~vlLP-CgH~cfC~~Ca~~l~~~s------~~CPi--CR~~ 367 (381)
.+...|.||++.++|.|+++ |||. ||..|+..|+... ..||+ |+..
T Consensus 5 ~~~~~CPI~~~~~~dPV~~~~cGh~-f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~ 59 (94)
T 2yu4_A 5 SSGFTCPITKEEMKKPVKNKVCGHT-YEEDAIVRMIESRQKRKKKAYCPQIGCSHT 59 (94)
T ss_dssp SSCCBCTTTCSBCSSEEEESSSCCE-EEHHHHHHHHHHHHTTTCCBCCCSTTCCCC
T ss_pred CcEeECcCcCchhcCCEEcCCCCCe-ecHHHHHHHHHHccCcCCCCCCCcCcCccc
Confidence 45679999999999999996 9999 9999999987643 48999 9855
No 65
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=97.94 E-value=3.4e-06 Score=62.99 Aligned_cols=54 Identities=15% Similarity=0.213 Sum_probs=46.5
Q ss_pred CCcceecccCCcCeEEe-CCCCccccHHHHHHHHhCCCCCccccccccceEEEEcC
Q 016892 323 GKECVICMTEPKDTAVL-PCRHMCMCGECAKELRLQSNKCPICRQPIEELIEIKIN 377 (381)
Q Consensus 323 ~~~CvICl~~~~d~vlL-PCgH~cfC~~Ca~~l~~~s~~CPiCR~~I~~~i~I~i~ 377 (381)
...|.||++.+.|.+++ +|||. ||..|+.+|.....+||++|..+...-.|.+.
T Consensus 3 ~~~CpIs~~~m~dPV~~~~sG~~-yer~~I~~~l~~~~~cP~t~~~L~~~~Lip~~ 57 (61)
T 2bay_A 3 HMLCAISGKVPRRPVLSPKSRTI-FEKSLLEQYVKDTGNDPITNEPLSIEEIVEIV 57 (61)
T ss_dssp -CCCTTTCSCCSSEEEETTTTEE-EEHHHHHHHHHHHSBCTTTCCBCCGGGCEECC
T ss_pred eEEecCCCCCCCCCEEeCCCCcE-EcHHHHHHHHHhCCCCcCCcCCCChhhcEECc
Confidence 46899999999999999 89999 99999999988777899999999776555443
No 66
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=97.84 E-value=9.3e-06 Score=77.32 Aligned_cols=49 Identities=16% Similarity=0.327 Sum_probs=42.4
Q ss_pred CCCCcceecccCCcCeEEe-CCCCccccHHHHHHHHhCC--CCCcc--ccccccc
Q 016892 321 DPGKECVICMTEPKDTAVL-PCRHMCMCGECAKELRLQS--NKCPI--CRQPIEE 370 (381)
Q Consensus 321 ~~~~~CvICl~~~~d~vlL-PCgH~cfC~~Ca~~l~~~s--~~CPi--CR~~I~~ 370 (381)
.....|.||++.+++.|.. .|||. ||..|+..|+... ..||+ ||..+..
T Consensus 179 ~~el~CPIcl~~f~DPVts~~CGHs-FcR~cI~~~~~~~~~~~CPvtGCr~~l~~ 232 (267)
T 3htk_C 179 KIELTCPITCKPYEAPLISRKCNHV-FDRDGIQNYLQGYTTRDCPQAACSQVVSM 232 (267)
T ss_dssp BCCSBCTTTSSBCSSEEEESSSCCE-EEHHHHHHHSTTCSCEECSGGGCSCEECG
T ss_pred ceeeECcCccCcccCCeeeCCCCCc-ccHHHHHHHHHhCCCCCCCcccccCcCch
Confidence 4577999999999999986 99999 9999999988654 46999 9997754
No 67
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.80 E-value=2.8e-05 Score=60.42 Aligned_cols=49 Identities=22% Similarity=0.389 Sum_probs=40.8
Q ss_pred CCCCcceecccCCcCeEEe-CCCCccccHHHHHHHHhCC--CCCccccccccc
Q 016892 321 DPGKECVICMTEPKDTAVL-PCRHMCMCGECAKELRLQS--NKCPICRQPIEE 370 (381)
Q Consensus 321 ~~~~~CvICl~~~~d~vlL-PCgH~cfC~~Ca~~l~~~s--~~CPiCR~~I~~ 370 (381)
+...+|.||++.......- .|+|. |...|+.+|+.+. .+||+||+.+..
T Consensus 13 ~~i~~C~IC~~~i~~g~~C~~C~h~-fH~~Ci~kWl~~~~~~~CP~Cr~~w~~ 64 (74)
T 2ct0_A 13 DAVKICNICHSLLIQGQSCETCGIR-MHLPCVAKYFQSNAEPRCPHCNDYWPH 64 (74)
T ss_dssp SSSCBCSSSCCBCSSSEECSSSCCE-ECHHHHHHHSTTCSSCCCTTTCSCCCS
T ss_pred CCCCcCcchhhHcccCCccCCCCch-hhHHHHHHHHHhcCCCCCCCCcCcCCC
Confidence 4567999999988655543 69999 9999999998876 789999988764
No 68
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=97.79 E-value=8.3e-06 Score=60.70 Aligned_cols=48 Identities=19% Similarity=0.367 Sum_probs=39.1
Q ss_pred CCCCcceecccCCcCeEEeCCCC-----ccccHHHHHHHHhC--CCCCcccccccc
Q 016892 321 DPGKECVICMTEPKDTAVLPCRH-----MCMCGECAKELRLQ--SNKCPICRQPIE 369 (381)
Q Consensus 321 ~~~~~CvICl~~~~d~vlLPCgH-----~cfC~~Ca~~l~~~--s~~CPiCR~~I~ 369 (381)
++...|.||++...+.+++||.+ . +...|+.+|... +..|++||..+.
T Consensus 4 ~~~~~CrIC~~~~~~~l~~PC~C~gs~~~-~H~~Cl~~W~~~~~~~~C~~C~~~~~ 58 (60)
T 1vyx_A 4 EDVPVCWICNEELGNERFRACGCTGELEN-VHRSCLSTWLTISRNTACQICGVVYN 58 (60)
T ss_dssp CSCCEETTTTEECSCCCCCSCCCSSGGGS-CCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCCEeEEeecCCCCceecCcCCCCchhh-hHHHHHHHHHHhCCCCccCCCCCeee
Confidence 45679999998877767789764 5 999999999863 568999999875
No 69
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=97.75 E-value=8.6e-06 Score=65.16 Aligned_cols=45 Identities=22% Similarity=0.583 Sum_probs=34.6
Q ss_pred CCCcceecccCCcCeEE---eCCCCccccHHHHHHHHhC--------CCCCcc--cccc
Q 016892 322 PGKECVICMTEPKDTAV---LPCRHMCMCGECAKELRLQ--------SNKCPI--CRQP 367 (381)
Q Consensus 322 ~~~~CvICl~~~~d~vl---LPCgH~cfC~~Ca~~l~~~--------s~~CPi--CR~~ 367 (381)
+..+|.||++...+..+ .+|||. ||.+|+..++.. .-+||. ||..
T Consensus 4 ~~~~C~IC~~~~~~~~~~~l~~CgH~-FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 4 GSSGCKLCLGEYPVEQMTTIAQCQCI-FCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp SBCCCSSSCCCCBGGGEEEETTTTEE-EEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CCcCCcccCcccccccceEcCCCCCc-ccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 45689999998765433 379999 999999985431 137999 9987
No 70
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=97.75 E-value=2.2e-05 Score=64.20 Aligned_cols=51 Identities=25% Similarity=0.617 Sum_probs=39.7
Q ss_pred cceecccCCcCe-EEeCCCCccccHHHHHHHHhC-CCCCccccccccceEEEEc
Q 016892 325 ECVICMTEPKDT-AVLPCRHMCMCGECAKELRLQ-SNKCPICRQPIEELIEIKI 376 (381)
Q Consensus 325 ~CvICl~~~~d~-vlLPCgH~cfC~~Ca~~l~~~-s~~CPiCR~~I~~~i~I~i 376 (381)
.|.+|---...- .++||.|+ ||.+|+..|.++ .+.||+||..|..+-.+..
T Consensus 3 fC~~C~~Pi~iygRmIPCkHv-FCydCa~~~~~~~~k~Cp~C~~~V~rVe~~~~ 55 (101)
T 3vk6_A 3 FCDKCGLPIKVYGRMIPCKHV-FCYDCAILHEKKGDKMCPGCSDPVQRIEQCTR 55 (101)
T ss_dssp BCTTTCSBCSEEEEEETTCCE-EEHHHHHHHHHTTCCBCTTTCCBCSEEEEEEG
T ss_pred ecCccCCCeEEEeeecccccc-HHHHHHHHHHhccCCCCcCcCCeeeeeEEecc
Confidence 366666554433 57799998 999999998754 5789999999999877654
No 71
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=97.48 E-value=2.1e-05 Score=77.54 Aligned_cols=71 Identities=17% Similarity=0.307 Sum_probs=48.0
Q ss_pred hhhhHHHhhC-CCCC--CC----CCCCCCCCCcceecccCCcC-eE-------EeCCCCccccHHHHHHHHhCC------
Q 016892 300 RYELREIYGI-GNSA--AE----GFEDSDPGKECVICMTEPKD-TA-------VLPCRHMCMCGECAKELRLQS------ 358 (381)
Q Consensus 300 ~~el~ei~g~-~~s~--~~----~~~~~~~~~~CvICl~~~~d-~v-------lLPCgH~cfC~~Ca~~l~~~s------ 358 (381)
...|..++++ .--. .. ..++++...+|.||++...+ .. -..|+|. |+..|+.+|....
T Consensus 278 ~eNL~~IL~i~~fP~p~~~~~~~~~e~ee~~~ECaICys~~l~~g~lPdk~C~n~~C~h~-FH~~CL~kWLrs~~~sRqS 356 (381)
T 3k1l_B 278 HKNLLRMFDLCYFPMPDWSDGPKLDEEDNEELRCNICFAYRLDGGEVPLVSCDNAKCVLK-CHAVCLEEWFKTLMDGKTF 356 (381)
T ss_dssp HHHHHHHTTCSSCCCCCGGGCCSCTTCCCSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCC-BCSGGGHHHHHHHHSSSCT
T ss_pred HHHHHHHhCccccCCCcccccccccccccCCccCcccceeecCCCCCccccccCCccCCc-cchHHHHHHHHhCCCcccc
Confidence 3457777777 2111 11 11234567899999998765 11 2369999 9999999997532
Q ss_pred -----CCCccccccccce
Q 016892 359 -----NKCPICRQPIEEL 371 (381)
Q Consensus 359 -----~~CPiCR~~I~~~ 371 (381)
+.||.||+.|...
T Consensus 357 Fnvi~G~CPyCr~pIs~s 374 (381)
T 3k1l_B 357 LEVSFGQCPFCKAKLSTS 374 (381)
T ss_dssp TTCCEEECTTTCCEEEGG
T ss_pred ccccCCCCCCCCCcCCcc
Confidence 4699999988754
No 72
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=94.87 E-value=0.0078 Score=48.56 Aligned_cols=52 Identities=31% Similarity=0.683 Sum_probs=42.2
Q ss_pred CCCcceecccCCcCeEEeCCC-CccccHHHHHHHHhCCCCCccccccccceEEEEc
Q 016892 322 PGKECVICMTEPKDTAVLPCR-HMCMCGECAKELRLQSNKCPICRQPIEELIEIKI 376 (381)
Q Consensus 322 ~~~~CvICl~~~~d~vlLPCg-H~cfC~~Ca~~l~~~s~~CPiCR~~I~~~i~I~i 376 (381)
.-..|..|+-+.+. ++-|. |. +|..|+..|+..+.+|+||..++-..|++..
T Consensus 27 G~~nCKsCWf~~k~--LV~C~dHY-LCl~CLtlmL~~SdrCpIC~~pLPtkl~~~~ 79 (99)
T 2ko5_A 27 GPQFCKSCWFENKG--LVECNNHY-LCLNCLTLLLSVSNRCPICKMPLPTKLRPSA 79 (99)
T ss_dssp CCCCCCSSCSCCSS--EEECSSCE-EEHHHHHHTCSSSSEETTTTEECCCCSCTTT
T ss_pred CcccChhhccccCC--eeeecchh-hHHHHHHHHHhhccCCcccCCcCCcceecCc
Confidence 35689999977775 44665 76 9999999999999999999999888776543
No 73
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=92.24 E-value=0.11 Score=48.50 Aligned_cols=48 Identities=21% Similarity=0.360 Sum_probs=37.9
Q ss_pred CCCcceecccCCcCeEEeC-CCCccccHHHHHHHHhCC--CCCccccccccc
Q 016892 322 PGKECVICMTEPKDTAVLP-CRHMCMCGECAKELRLQS--NKCPICRQPIEE 370 (381)
Q Consensus 322 ~~~~CvICl~~~~d~vlLP-CgH~cfC~~Ca~~l~~~s--~~CPiCR~~I~~ 370 (381)
.-..|.||.+-......-+ |+|. |...|+..|.... .+||.|+.....
T Consensus 179 ~i~~C~iC~~iv~~g~~C~~C~~~-~H~~C~~~~~~~~~~~~CP~C~~~W~~ 229 (238)
T 3nw0_A 179 AVKICNICHSLLIQGQSCETCGIR-MHLPCVAKYFQSNAEPRCPHCNDYWPH 229 (238)
T ss_dssp TCCBCTTTCSBCSSCEECSSSCCE-ECHHHHHHHTTTCSSCBCTTTCCBCCS
T ss_pred CCCcCcchhhHHhCCcccCccChH-HHHHHHHHHHHhCCCCCCCCCCCCCCC
Confidence 4679999998776555444 9999 9999999987654 489999987554
No 74
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=91.73 E-value=0.059 Score=42.90 Aligned_cols=32 Identities=25% Similarity=0.617 Sum_probs=26.6
Q ss_pred CCCcceecccC-CcCeEE--eCCCCccccHHHHHHH
Q 016892 322 PGKECVICMTE-PKDTAV--LPCRHMCMCGECAKEL 354 (381)
Q Consensus 322 ~~~~CvICl~~-~~d~vl--LPCgH~cfC~~Ca~~l 354 (381)
++..|.||.+. .++.+. +.|+|. ||..|++.+
T Consensus 2 ee~~C~~C~~~~~~~av~~C~~C~~~-~C~~Cl~~~ 36 (101)
T 2jun_A 2 EKVLCQFCDQDPAQDAVKTCVTCEVS-YCDECLKAT 36 (101)
T ss_dssp CCCBCTTCCSSSCCBCCEEETTTTEE-ECHHHHHHH
T ss_pred CCCCCcCCCCCCCCCceEECCcCChH-HhHHHCHHH
Confidence 35689999975 567766 899999 999999983
No 75
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=88.76 E-value=0.2 Score=39.25 Aligned_cols=33 Identities=30% Similarity=0.660 Sum_probs=28.8
Q ss_pred CCCCcceecccCCcCeEEeCC----CCccccHHHHHHH
Q 016892 321 DPGKECVICMTEPKDTAVLPC----RHMCMCGECAKEL 354 (381)
Q Consensus 321 ~~~~~CvICl~~~~d~vlLPC----gH~cfC~~Ca~~l 354 (381)
.....|.+|.+...|+-|..| .|. ||+-|.+..
T Consensus 13 ~a~l~CtlC~erLEdtHFVQCPsv~~Hk-FCFpCsr~s 49 (93)
T 2cs3_A 13 SGPLCCTICHERLEDTHFVQCPSVPSHK-FCFPCSRES 49 (93)
T ss_dssp CCSCCCSSSCSCCSSTTSEECSSCSSCE-ECHHHHHHH
T ss_pred CCeeEeecchhhhccCceeeCCCccCCe-eeccccHHH
Confidence 457899999999999988888 588 999999884
No 76
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=58.58 E-value=9.9 Score=37.61 Aligned_cols=47 Identities=28% Similarity=0.574 Sum_probs=31.7
Q ss_pred CCCcceecccCCcCeEE-eCCCCccccHHHHHHHH--h--CCCCCcccccccc
Q 016892 322 PGKECVICMTEPKDTAV-LPCRHMCMCGECAKELR--L--QSNKCPICRQPIE 369 (381)
Q Consensus 322 ~~~~CvICl~~~~d~vl-LPCgH~cfC~~Ca~~l~--~--~s~~CPiCR~~I~ 369 (381)
-.+.|.|-+......+- ..|.|+ -|++-..-+. . ..-.||+|...+.
T Consensus 248 vSL~CPlS~~ri~~PvRg~~C~Hl-QCFDl~sfL~~~~~~~~W~CPIC~k~~~ 299 (371)
T 3i2d_A 248 MSLQCPISYTRMKYPSKSINCKHL-QCFDALWFLHSQLQIPTWQCPVCQIDIA 299 (371)
T ss_dssp EESBCTTTSSBCSSEEEETTCCSS-CCEEHHHHHHHHHHSCCCBCTTTCCBCC
T ss_pred EeecCCCccccccccCcCCcCCCc-ceECHHHHHHHhhcCCceeCCCCCcccC
Confidence 45788888888877765 469998 5665543322 2 2347999988763
No 77
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=57.19 E-value=6 Score=28.98 Aligned_cols=40 Identities=30% Similarity=0.683 Sum_probs=30.9
Q ss_pred CcceecccCCcCeEEe---CCCCccccHHHHHHHHhCCCCCccc
Q 016892 324 KECVICMTEPKDTAVL---PCRHMCMCGECAKELRLQSNKCPIC 364 (381)
Q Consensus 324 ~~CvICl~~~~d~vlL---PCgH~cfC~~Ca~~l~~~s~~CPiC 364 (381)
..|..|+..+.+...+ -|++. ||.+|-.-+...-..||.|
T Consensus 16 ~~C~~C~~~~~~~~~y~C~~C~~~-FC~dCD~fiHe~Lh~CPgC 58 (59)
T 1z60_A 16 RFCYGCQGELKDQHVYVCAVCQNV-FCVDCDVFVHDSLHSCPGC 58 (59)
T ss_dssp CEETTTTEECTTSEEECCTTTTCC-BCHHHHHTTTTTSCSSSTT
T ss_pred CcccccCcccCCCccEECCccCcC-cccchhHHHHhhccCCcCC
Confidence 4688898888665433 48888 9999977666666889998
No 78
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=47.65 E-value=21 Score=39.59 Aligned_cols=53 Identities=23% Similarity=0.197 Sum_probs=46.0
Q ss_pred CCCCCCcceecccCCcCeEEeCCCCccccHHHHHHHHhCCCCCccccccccce
Q 016892 319 DSDPGKECVICMTEPKDTAVLPCRHMCMCGECAKELRLQSNKCPICRQPIEEL 371 (381)
Q Consensus 319 ~~~~~~~CvICl~~~~d~vlLPCgH~cfC~~Ca~~l~~~s~~CPiCR~~I~~~ 371 (381)
+.-+...|.|-++-.+|.|+++.||..+=..++.+|.....+||+=|+++...
T Consensus 887 ~iP~~F~cPIs~~lM~DPVilpsG~~TydR~~I~~wl~~~~tdP~Tr~~L~~~ 939 (968)
T 3m62_A 887 DVPDEFLDPLMYTIMKDPVILPASKMNIDRSTIKAHLLSDSTDPFNRMPLKLE 939 (968)
T ss_dssp CSCGGGBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCGG
T ss_pred CCcHHhCCcchhhHHhCCeEcCCCCEEECHHHHHHHHhcCCCCCCCCCCCCcc
Confidence 34567899999999999999999864499999999998888999999988753
No 79
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=45.61 E-value=9.1 Score=28.71 Aligned_cols=34 Identities=24% Similarity=0.515 Sum_probs=25.4
Q ss_pred CCCCCcceecccCCcCeEEeCC-CCccccHHHHHHHH
Q 016892 320 SDPGKECVICMTEPKDTAVLPC-RHMCMCGECAKELR 355 (381)
Q Consensus 320 ~~~~~~CvICl~~~~d~vlLPC-gH~cfC~~Ca~~l~ 355 (381)
+++..-|+||.+.. ...-+-| +-+ ||..|.+.+.
T Consensus 5 ~ee~pWC~ICneDA-tlrC~gCdgDL-YC~rC~rE~H 39 (67)
T 2d8v_A 5 SSGLPWCCICNEDA-TLRCAGCDGDL-YCARCFREGH 39 (67)
T ss_dssp CCCCSSCTTTCSCC-CEEETTTTSEE-ECSSHHHHHT
T ss_pred CcCCCeeEEeCCCC-eEEecCCCCce-ehHHHHHHHc
Confidence 34567899999883 3445678 566 9999998875
No 80
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=44.23 E-value=16 Score=35.98 Aligned_cols=47 Identities=19% Similarity=0.398 Sum_probs=32.4
Q ss_pred CCCcceecccCCcCeEE-eCCCCccccHHHHHHHH--h--CCCCCcccccccc
Q 016892 322 PGKECVICMTEPKDTAV-LPCRHMCMCGECAKELR--L--QSNKCPICRQPIE 369 (381)
Q Consensus 322 ~~~~CvICl~~~~d~vl-LPCgH~cfC~~Ca~~l~--~--~s~~CPiCR~~I~ 369 (381)
-...|.|-+......+- ..|.|+ -|++-..-+. . ..-.||+|...+.
T Consensus 214 vSL~CPlS~~ri~~P~Rg~~C~Hl-qCFDl~sfL~~~~~~~~W~CPiC~k~~~ 265 (360)
T 4fo9_A 214 VSLMCPLGKMRLTIPCRAVTCTHL-QCFDAALYLQMNEKKPTWICPVCDKKAA 265 (360)
T ss_dssp EESBCTTTCSBCSSEEEETTCCCC-CCEEHHHHHHHHHHSCCCBCTTTCSBCC
T ss_pred EeeeCCCccceeccCCcCCCCCCC-ccCCHHHHHHHHhhCCCeECCCCCcccC
Confidence 35678888888877765 469998 6666544332 2 2247999998775
No 81
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=43.96 E-value=35 Score=27.06 Aligned_cols=48 Identities=25% Similarity=0.580 Sum_probs=34.0
Q ss_pred CCCcceecccCCcCe----EEeCC---CCccccHHHHHHHHhC-CCCCccccccccc
Q 016892 322 PGKECVICMTEPKDT----AVLPC---RHMCMCGECAKELRLQ-SNKCPICRQPIEE 370 (381)
Q Consensus 322 ~~~~CvICl~~~~d~----vlLPC---gH~cfC~~Ca~~l~~~-s~~CPiCR~~I~~ 370 (381)
....|.||-+..-.+ +|.-| +-- +|..|+.--+.. +..||-|.+...+
T Consensus 15 ~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FP-vCrpCyEYErkeG~q~CpqCktrYkr 70 (93)
T 1weo_A 15 DGQFCEICGDQIGLTVEGDLFVACNECGFP-ACRPCYEYERREGTQNCPQCKTRYKR 70 (93)
T ss_dssp SSCBCSSSCCBCCBCSSSSBCCSCSSSCCC-CCHHHHHHHHHTSCSSCTTTCCCCCC
T ss_pred CCCccccccCccccCCCCCEEEeeeccCCh-hhHHHHHHHHhccCccccccCCcccc
Confidence 567999998864221 45554 444 799999986654 4579999998864
No 82
>2a20_A Regulating synaptic membrane exocytosis protein 2; zinc-finger domain, metal binding protein; NMR {Rattus norvegicus} PDB: 2cjs_C
Probab=41.90 E-value=0.96 Score=33.33 Aligned_cols=43 Identities=35% Similarity=0.899 Sum_probs=24.3
Q ss_pred CCCCCcceeccc-CCcCeEEeCCCCcc------ccHHHHHHHHhCCC----CCccccc
Q 016892 320 SDPGKECVICMT-EPKDTAVLPCRHMC------MCGECAKELRLQSN----KCPICRQ 366 (381)
Q Consensus 320 ~~~~~~CvICl~-~~~d~vlLPCgH~c------fC~~Ca~~l~~~s~----~CPiCR~ 366 (381)
.++...|.||+. .+.|. |||.| +|..|-..+..+++ .|-+||.
T Consensus 6 ~~d~~~C~iC~KTKFADG----~Gh~C~yCk~r~CaRCGg~v~lr~~k~~WvC~lC~k 59 (62)
T 2a20_A 6 KGDAPTCGICHKTKFADG----CGHNCSYCQTKFCARCGGRVSLRSNKVMWVCNLCRK 59 (62)
T ss_dssp SSCCCCCSSSSCSCCCSS----CCEEBTTTCCEECTTSEEEEESSTTCEEEEEHHHHH
T ss_pred cCCcchhhhhccceeccC----CCccccccCCeeecccCCEeeecCCeEEEEehhhhh
Confidence 356779999985 34553 67764 55555444333332 2555554
No 83
>2v8f_C MDIA1, profilin IIA; alternative splicing, protein-binding, cytoplasm, acetylation, cytoskeleton, actin-binding; 1.1A {Mus musculus}
Probab=40.20 E-value=20 Score=21.64 Aligned_cols=7 Identities=14% Similarity=0.173 Sum_probs=2.7
Q ss_pred CCCCCCC
Q 016892 109 NQAHGWP 115 (381)
Q Consensus 109 ~~~~~~p 115 (381)
+++.+.|
T Consensus 8 Pg~~giP 14 (26)
T 2v8f_C 8 PGVASIP 14 (26)
T ss_pred CCCCCCC
Confidence 3333444
No 84
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=33.75 E-value=7.2 Score=37.57 Aligned_cols=52 Identities=19% Similarity=0.419 Sum_probs=40.1
Q ss_pred CCCCcceecccCCcCeEEeC----CC--CccccHHHHHHHHhCCCCCccccccccceEEEE
Q 016892 321 DPGKECVICMTEPKDTAVLP----CR--HMCMCGECAKELRLQSNKCPICRQPIEELIEIK 375 (381)
Q Consensus 321 ~~~~~CvICl~~~~d~vlLP----Cg--H~cfC~~Ca~~l~~~s~~CPiCR~~I~~~i~I~ 375 (381)
.....|.||-+...-.++.. =| |+ .|.-|...|...-.+|+.|-.. +.+.+.
T Consensus 180 ~~~~~CPvCGs~P~~s~l~~~g~~~G~R~l-~Cs~C~t~W~~~R~~C~~Cg~~--~~l~y~ 237 (309)
T 2fiy_A 180 ESRTLCPACGSPPMAGMIRQGGKETGLRYL-SCSLCACEWHYVRIKCSHCEES--KHLAYL 237 (309)
T ss_dssp TTCSSCTTTCCCEEEEEEEC----CCEEEE-EETTTCCEEECCTTSCSSSCCC--SCCEEE
T ss_pred ccCCCCCCCCCcCceeEEeecCCCCCcEEE-EeCCCCCEEeecCcCCcCCCCC--CCeeEE
Confidence 45789999999988776642 23 45 9999999999888899999886 334444
No 85
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=33.62 E-value=28 Score=25.64 Aligned_cols=46 Identities=17% Similarity=0.422 Sum_probs=29.6
Q ss_pred CCCCcceecccCCcCeEE-eCCCCccccHHHHHHHHhCC----CCCccccccc
Q 016892 321 DPGKECVICMTEPKDTAV-LPCRHMCMCGECAKELRLQS----NKCPICRQPI 368 (381)
Q Consensus 321 ~~~~~CvICl~~~~d~vl-LPCgH~cfC~~Ca~~l~~~s----~~CPiCR~~I 368 (381)
..+..|.||.+... .++ --|... |+..|+.-.+... =.|+.|++..
T Consensus 10 ~~~~~C~vC~~~~~-ll~Cd~C~~~-~H~~Cl~P~l~~~P~g~W~C~~C~~~~ 60 (66)
T 2lri_C 10 APGARCGVCGDGTD-VLRCTHCAAA-FHWRCHFPAGTSRPGTGLRCRSCSGDV 60 (66)
T ss_dssp CTTCCCTTTSCCTT-CEECSSSCCE-ECHHHHCTTTCCCCSSSCCCTTTTTCC
T ss_pred CCCCCcCCCCCCCe-EEECCCCCCc-eecccCCCccCcCCCCCEECccccCCC
Confidence 45668999986543 332 247766 9999986432221 2699997643
No 86
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=33.45 E-value=29 Score=29.17 Aligned_cols=47 Identities=17% Similarity=0.380 Sum_probs=29.9
Q ss_pred CCCCCcceecccCCcCeEEeCCCCccccHHHHHHHH------h-----CCCCCcccccc
Q 016892 320 SDPGKECVICMTEPKDTAVLPCRHMCMCGECAKELR------L-----QSNKCPICRQP 367 (381)
Q Consensus 320 ~~~~~~CvICl~~~~d~vlLPCgH~cfC~~Ca~~l~------~-----~s~~CPiCR~~ 367 (381)
+..+..|.||.+.-.-..---|-.. ||..|+.... . ..=.|.+|+..
T Consensus 54 Dg~~~~C~vC~dGG~LlcCd~Cpr~-Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~~ 111 (129)
T 3ql9_A 54 DGMDEQCRWCAEGGNLICCDFCHNA-FCKKCILRNLGRRELSTIMDENNQWYCYICHPE 111 (129)
T ss_dssp TSCBSSCTTTCCCSEEEECSSSSCE-EEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCCG
T ss_pred CCCCCcCeecCCCCeeEecCCCchh-hhHHHhCCCcchhHHHHhccCCCCeEcCCcCCH
Confidence 3456679999976442222247666 9999998631 1 12379999764
No 87
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=31.56 E-value=5.4 Score=31.20 Aligned_cols=48 Identities=21% Similarity=0.533 Sum_probs=28.8
Q ss_pred CCCCcceecccCCc---CeEEe--CCCCccccHHHHHH-HH-------hCCCCCcccccccc
Q 016892 321 DPGKECVICMTEPK---DTAVL--PCRHMCMCGECAKE-LR-------LQSNKCPICRQPIE 369 (381)
Q Consensus 321 ~~~~~CvICl~~~~---d~vlL--PCgH~cfC~~Ca~~-l~-------~~s~~CPiCR~~I~ 369 (381)
+.+..|.||..... +.+|+ -|... |+..|+.- +. ...=.|+.|+....
T Consensus 14 e~~~~C~vC~~~~~~~~~~ll~CD~C~~~-yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~~~ 74 (88)
T 1wev_A 14 EMGLACVVCRQMTVASGNQLVECQECHNL-YHQDCHKPQVTDKEVNDPRLVWYCARCTRQMK 74 (88)
T ss_dssp HHCCSCSSSCCCCCCTTCCEEECSSSCCE-EETTTSSSCCCHHHHHCTTCCCCCHHHHHHHC
T ss_pred CCCCcCCCCCCCCCCCCCceEECCCCCCe-EcCccCCCcccccccCCCCCCeeCccccchhh
Confidence 45678999997642 34443 46655 77777653 11 11236888876554
No 88
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=30.30 E-value=21 Score=26.69 Aligned_cols=55 Identities=20% Similarity=0.390 Sum_probs=30.6
Q ss_pred CCCCCCCCCCCCCCcceecccCCcCeEEe---CCCCccccHHHHHHH---------HhCCCCCcccccc
Q 016892 311 NSAAEGFEDSDPGKECVICMTEPKDTAVL---PCRHMCMCGECAKEL---------RLQSNKCPICRQP 367 (381)
Q Consensus 311 ~s~~~~~~~~~~~~~CvICl~~~~d~vlL---PCgH~cfC~~Ca~~l---------~~~s~~CPiCR~~ 367 (381)
+++.+.+....+...| ||.....+..++ -|... |+..|+.-. ....-.|+.|+..
T Consensus 4 ~~~~e~~~~d~~~~~C-~C~~~~~~~~MI~Cd~C~~W-fH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~~ 70 (76)
T 1wem_A 4 GSSGECEVYDPNALYC-ICRQPHNNRFMICCDRCEEW-FHGDCVGISEARGRLLERNGEDYICPNCTIL 70 (76)
T ss_dssp CCCCCCCSCCTTCCCS-TTCCCCCSSCEEECSSSCCE-EEHHHHSCCHHHHHHHHHHTCCCCCHHHHHH
T ss_pred CCcCCccccCCCCCEE-ECCCccCCCCEEEeCCCCCc-EeCeEEccchhhhhhccCCCCeEECcCCcCc
Confidence 3333333333445666 898765432233 46666 888886421 1234579999764
No 89
>2csz_A Synaptotagmin-like protein 4; exophilin 2, granuphilin, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=27.54 E-value=23 Score=27.22 Aligned_cols=46 Identities=17% Similarity=0.563 Sum_probs=28.8
Q ss_pred CCCCCcceecccCCc-----CeEEeCCCCccccHHHHHHHHhCCCCCccccc
Q 016892 320 SDPGKECVICMTEPK-----DTAVLPCRHMCMCGECAKELRLQSNKCPICRQ 366 (381)
Q Consensus 320 ~~~~~~CvICl~~~~-----d~vlLPCgH~cfC~~Ca~~l~~~s~~CPiCR~ 366 (381)
.+....|..|.+.+- -.+---|.|. .|.+|-.......=.|-||-.
T Consensus 22 ~~~~r~CarC~~~LG~l~~~g~~C~~Ck~r-VC~~Crv~~~~~~W~C~VC~k 72 (76)
T 2csz_A 22 HYSDRTCARCQESLGRLSPKTNTCRGCNHL-VCRDCRIQESNGTWRCKVCSG 72 (76)
T ss_dssp TCCCCBCSSSCCBCSSSCTTTSEETTTTEE-CCTTSEEECSTTCEEEHHHHS
T ss_pred CCCccchhhhCccccccccCCCcCcccChh-hcccccccCCCCCEEEeeCch
Confidence 456789999988762 2344468999 888885332211225767644
No 90
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=26.02 E-value=49 Score=28.21 Aligned_cols=47 Identities=17% Similarity=0.365 Sum_probs=31.7
Q ss_pred CCCCCcceecccCCcCeEEeCCCCccccHHHHHHHHh---------C--CCCCcccccc
Q 016892 320 SDPGKECVICMTEPKDTAVLPCRHMCMCGECAKELRL---------Q--SNKCPICRQP 367 (381)
Q Consensus 320 ~~~~~~CvICl~~~~d~vlLPCgH~cfC~~Ca~~l~~---------~--s~~CPiCR~~ 367 (381)
...+..|.||.+.-.-..--.|-.. ||..|+..... . .=.|++|+..
T Consensus 60 Dg~~d~C~vC~~GG~LlcCD~Cpr~-Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~~ 117 (142)
T 2lbm_A 60 DGMDEQCRWCAEGGNLICCDFCHNA-FCKKCILRNLGRKELSTIMDENNQWYCYICHPE 117 (142)
T ss_dssp TSCBCSCSSSCCCSSEEECSSSCCE-EEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCCC
T ss_pred CCCCCeecccCCCCcEEeCCCCCCe-eeHhhcCCCCChhhhhhcccCCCCCEeecccCc
Confidence 3456799999986643322367777 99999985321 1 2369999853
No 91
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=22.36 E-value=53 Score=32.55 Aligned_cols=66 Identities=17% Similarity=0.247 Sum_probs=39.9
Q ss_pred chhhhHHHhhCCCCCCCCCCCCCCCCcceecccCCcCeEEe--CCCCccccHHHHHHHHhC----------CCCCccccc
Q 016892 299 VRYELREIYGIGNSAAEGFEDSDPGKECVICMTEPKDTAVL--PCRHMCMCGECAKELRLQ----------SNKCPICRQ 366 (381)
Q Consensus 299 ~~~el~ei~g~~~s~~~~~~~~~~~~~CvICl~~~~d~vlL--PCgH~cfC~~Ca~~l~~~----------s~~CPiCR~ 366 (381)
....-.+.|..+.-.. |++..+..|.+|-+...-..-- .|... ||..|++.+.-. .=.|-+|..
T Consensus 72 lC~~Ck~~y~~~~f~~---D~DG~~~yCr~C~~Gg~l~~Cdn~~C~r~-FC~~Ci~~n~g~~~~~~i~~~d~W~Cf~C~p 147 (386)
T 2pv0_B 72 ICAPCKDKFLDALFLY---DDDGYQSYCSICCSGETLLICGNPDCTRC-YCFECVDSLVGPGTSGKVHAMSNWVCYLCLP 147 (386)
T ss_dssp CCHHHHHHHHTTTTCB---CSSSSBCSCTTTCCCSSCEECCSTTCCCE-ECHHHHHHHTCTTHHHHHHHCSSCCCTTTSS
T ss_pred hhhHHHHHHhccCccc---CCCCCcccceEcCCCCeEEEeCCCCCCcc-hHHHHHHHhcChhHHHHhhccCCceEEEcCC
Confidence 3344555555443322 3344577999999766433223 46665 999999987521 136999976
Q ss_pred cc
Q 016892 367 PI 368 (381)
Q Consensus 367 ~I 368 (381)
.-
T Consensus 148 ~p 149 (386)
T 2pv0_B 148 SS 149 (386)
T ss_dssp CC
T ss_pred cc
Confidence 54
No 92
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=20.93 E-value=55 Score=24.35 Aligned_cols=46 Identities=20% Similarity=0.437 Sum_probs=26.1
Q ss_pred CCCCCcceecccCCcCeEEeC-----CC-CccccHHHHHHHHh---CCCCCcccccccc
Q 016892 320 SDPGKECVICMTEPKDTAVLP-----CR-HMCMCGECAKELRL---QSNKCPICRQPIE 369 (381)
Q Consensus 320 ~~~~~~CvICl~~~~d~vlLP-----Cg-H~cfC~~Ca~~l~~---~s~~CPiCR~~I~ 369 (381)
..+...| ||....... ++- |. .. |+..|+. |.. ..-.||.|+..-.
T Consensus 13 ~~~~~~C-~C~~~~~g~-MI~CD~~~C~~~w-fH~~Cvg-l~~~p~g~w~Cp~C~~~~~ 67 (71)
T 1wen_A 13 PNEPTYC-LCHQVSYGE-MIGCDNPDCSIEW-FHFACVG-LTTKPRGKWFCPRCSQESG 67 (71)
T ss_dssp TTSCCCS-TTCCCSCSS-EECCSCSSCSCCC-EETTTTT-CSSCCSSCCCCTTTSSCSS
T ss_pred CCCCCEE-ECCCCCCCC-EeEeeCCCCCCcc-EecccCC-cCcCCCCCEECCCCCcccc
Confidence 3455667 798743332 333 44 34 7888876 222 1236999987544
Done!