Query 016895
Match_columns 381
No_of_seqs 151 out of 1220
Neff 4.2
Searched_HMMs 46136
Date Fri Mar 29 03:46:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016895.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016895hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0192 MetK S-adenosylmethion 100.0 6E-182 1E-186 1323.9 34.8 366 3-376 4-381 (388)
2 PLN02243 S-adenosylmethionine 100.0 6E-180 1E-184 1323.8 38.6 371 1-374 1-386 (386)
3 PTZ00104 S-adenosylmethionine 100.0 5E-179 1E-183 1321.3 38.4 374 2-380 9-397 (398)
4 PRK05250 S-adenosylmethionine 100.0 3E-178 7E-183 1311.8 37.4 363 3-375 2-376 (384)
5 PRK12459 S-adenosylmethionine 100.0 4E-178 1E-182 1311.7 36.7 364 1-375 1-378 (386)
6 TIGR01034 metK S-adenosylmethi 100.0 1E-177 3E-182 1303.5 36.4 360 5-376 1-372 (377)
7 KOG1506 S-adenosylmethionine s 100.0 3E-171 7E-176 1220.8 31.5 368 2-376 4-383 (383)
8 PF02773 S-AdoMet_synt_C: S-ad 100.0 6.3E-77 1.4E-81 520.6 5.9 126 240-370 1-138 (138)
9 PF02772 S-AdoMet_synt_M: S-ad 100.0 1.5E-56 3.2E-61 386.3 11.6 119 117-238 2-120 (120)
10 PF00438 S-AdoMet_synt_N: S-ad 100.0 1.3E-48 2.8E-53 327.7 6.7 100 2-101 1-100 (100)
11 PRK04439 S-adenosylmethionine 98.8 1.9E-07 4.1E-12 95.2 18.4 279 11-317 25-353 (399)
12 PF01941 AdoMet_Synthase: S-ad 98.8 4.1E-07 8.8E-12 92.7 18.2 283 11-317 25-353 (396)
13 COG1812 MetK Archaeal S-adenos 97.7 0.0007 1.5E-08 68.8 14.4 280 10-313 24-348 (400)
14 PRK11023 outer membrane lipopr 50.7 26 0.00057 32.5 4.7 43 17-59 121-164 (191)
15 TIGR00590 pcna proliferating c 50.3 81 0.0018 30.6 8.1 35 281-319 204-238 (259)
16 PF14084 DUF4264: Protein of u 48.7 4.7 0.0001 31.1 -0.5 39 98-142 11-49 (52)
17 PF02980 FokI_C: Restriction e 47.0 18 0.0004 33.0 2.9 37 278-314 77-113 (142)
18 PRK11198 LysM domain/BON super 46.7 35 0.00077 30.5 4.7 40 20-60 24-63 (147)
19 PF00352 TBP: Transcription fa 46.0 23 0.00051 28.6 3.1 57 186-242 4-64 (86)
20 cd04518 TBP_archaea archaeal T 44.6 65 0.0014 29.9 6.2 82 186-300 2-87 (174)
21 PRK00394 transcription factor; 41.5 87 0.0019 29.2 6.6 82 186-300 1-86 (179)
22 COG2441 Predicted butyrate kin 36.3 28 0.00061 35.6 2.6 66 255-335 185-272 (374)
23 PF04208 MtrA: Tetrahydrometha 32.2 54 0.0012 31.0 3.6 41 34-75 18-65 (176)
24 KOG3447 Mitochondrial/chloropl 32.0 16 0.00036 33.3 0.2 12 249-260 95-106 (150)
25 cd04517 TLF TBP-like factors ( 30.9 72 0.0016 29.5 4.2 57 186-242 3-62 (174)
26 COG2101 SPT15 TATA-box binding 30.9 63 0.0014 30.8 3.8 57 186-242 8-68 (185)
27 PLN00062 TATA-box-binding prot 29.7 1.5E+02 0.0033 27.7 6.2 104 186-322 2-113 (179)
28 TIGR02889 spore_YpeB germinati 29.6 2.5E+02 0.0055 29.9 8.4 97 38-141 262-371 (435)
29 cd04516 TBP_eukaryotes eukaryo 29.2 1.6E+02 0.0035 27.3 6.2 80 186-298 2-85 (174)
30 cd04518 TBP_archaea archaeal T 28.5 96 0.0021 28.8 4.6 58 185-242 92-153 (174)
31 KOG0671 LAMMER dual specificit 26.3 3.1 6.6E-05 43.6 -6.1 79 249-335 87-166 (415)
32 cd00652 TBP_TLF TATA box bindi 26.2 5.2E+02 0.011 23.8 9.5 82 186-300 2-87 (174)
33 PF02171 Piwi: Piwi domain; I 26.0 53 0.0012 31.6 2.6 22 134-155 279-300 (302)
34 PRK10568 periplasmic protein; 25.4 1.2E+02 0.0026 28.4 4.7 51 23-76 61-111 (203)
35 PF04566 RNA_pol_Rpb2_4: RNA p 25.1 1.4E+02 0.003 23.4 4.2 26 146-178 15-40 (63)
36 cd01269 PLX Pollux (PLX) Phosp 24.6 2.2E+02 0.0047 25.8 5.9 82 51-135 6-94 (129)
37 PRK04964 hypothetical protein; 24.1 65 0.0014 26.0 2.2 32 116-162 13-44 (66)
38 PRK00394 transcription factor; 23.0 1.3E+02 0.0028 28.0 4.4 58 185-242 91-154 (179)
39 PF06786 UPF0253: Uncharacteri 22.6 74 0.0016 25.7 2.3 32 116-162 13-44 (66)
40 PRK14053 methyltransferase; Pr 22.4 1.1E+02 0.0024 29.4 3.8 42 33-75 17-62 (194)
41 PRK11023 outer membrane lipopr 22.3 1.4E+02 0.003 27.8 4.4 42 18-60 44-88 (191)
42 KOG1406 Peroxisomal 3-ketoacyl 21.0 54 0.0012 33.5 1.5 21 229-249 334-355 (408)
43 COG4669 EscJ Type III secretor 20.7 1.2E+02 0.0026 30.1 3.8 94 131-235 97-190 (246)
44 PRK00964 tetrahydromethanopter 20.3 1.1E+02 0.0024 30.1 3.4 42 33-75 20-69 (225)
No 1
>COG0192 MetK S-adenosylmethionine synthetase [Coenzyme metabolism]
Probab=100.00 E-value=5.7e-182 Score=1323.94 Aligned_cols=366 Identities=61% Similarity=0.989 Sum_probs=356.7
Q ss_pred ccceecccCCCCCChhhhhhhHHHHHHHHhhcCCCCcEEEEEEeeeCeEEEEEEeeeeeeccHHHHHHHHHHhhCCCCCC
Q 016895 3 TFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDD 82 (381)
Q Consensus 3 ~~lfTSESV~~GHPDKicDqISDaILDa~L~~Dp~arVA~E~~v~~~~v~i~GEitt~a~vd~~~ivR~~i~~IGY~~~~ 82 (381)
.+|||||||+|||||||||||||||||+||+|||+|||||||+|++|+|+|+|||+|+++||+++++|++|++|||++++
T Consensus 4 ~~lFTSESVseGHPDKi~DqISDaILD~~L~~Dp~srVAcEt~v~tg~v~i~GEitt~~~vd~~~~~r~~I~~IGY~~~~ 83 (388)
T COG0192 4 YFLFTSESVSEGHPDKICDQISDAILDAILKQDPNSRVACETLVTTGLVVIAGEITTSAYVDIVNIARKTIKEIGYTESD 83 (388)
T ss_pred cceeeeccccCCCChHHHHHHhHHHHHHHHhcCCCceEEEEEEEecCeEEEEEEEecCccccHHHHHHHHHHHhCCCccc
Confidence 46999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCceEEEEeeccCChhhhccccCCCCCCCCCCCCCcccceeeeecCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCC
Q 016895 83 VGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEDIGAGDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRKNSTCS 162 (381)
Q Consensus 83 ~gfd~~~~~v~~~i~~QS~dIa~gV~~~~~~~~~~~GAGDQGimfGYA~~ET~~~MPl~i~lAh~L~~~l~~~Rk~~~~~ 162 (381)
+|||+++|.|+++|++|||||+|||++.. +..+++|||||||||||||||||+||||||+|||+|++||+++||+|.+|
T Consensus 84 ~Gfd~~t~~vl~~i~~QSpDIaqgVd~~~-~~~~~~GAGDQGimFGyA~~ET~~lMPlpI~lAH~l~~r~a~~Rk~g~l~ 162 (388)
T COG0192 84 YGFDAKTCAVLVAIGEQSPDIAQGVDEAD-EELDEIGAGDQGIMFGYACNETPELMPLPISLAHRLLRRLAEVRKNGELP 162 (388)
T ss_pred cCcCccceEEEeecccCChhHHHhhhhcc-cchhhcCCCcceeEeeeecCCcccccChHHHHHHHHHHHHHHHHhcCCCc
Confidence 99999999999999999999999999643 24568999999999999999999999999999999999999999999999
Q ss_pred cccCCcceeEEEEEecCCCceeeeEEeEEEEeeecCCCCChHHHHHHHHHhhcccccCCCCCCCCcEEEECCCCCeEEcC
Q 016895 163 WLRPDGKTQVTVEYYNDNGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNPSGRFVIGG 242 (381)
Q Consensus 163 ~l~pD~KtQVtv~Y~~~~g~~~p~rv~tivvS~QH~~~v~~~~l~~~i~e~Vi~~v~~~~~~~~~t~~~INPtG~FviGG 242 (381)
|||||+||||||+|++ |+ +|++|++||+||||++++++++||+.++|+||+|++|+++++++|+|+|||||||||||
T Consensus 163 ~LrpD~KsQVtv~Y~~-~~--~p~~idtIvvStQH~~~i~~~~l~~~v~e~iI~pv~~~~~l~~~tk~~INPtGrFViGG 239 (388)
T COG0192 163 WLRPDAKSQVTVEYED-NG--KPVRIDTIVVSTQHDPDISQEQLREDVIEEIIKPVLPEELLDDKTKYFINPTGRFVIGG 239 (388)
T ss_pred ccCCCcceeEEEEEcC-CC--CceeEEEEEEEeccCcccCHHHHHHHHHHHHHhhhccHhhcCcCceEEECCCCCeeeCC
Confidence 9999999999999986 46 89999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcccCCceEEEecCCCccccccccccCCCCCcccchhhhHHHHHHHHHHHhcccccceEEEEEeecCCCcccHH---
Q 016895 243 PHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVF--- 319 (381)
Q Consensus 243 P~~DtGLTGRKiiVDTYGg~~~HGGGAfSGKDptKVDRSaAY~AR~iAKniVaaGlA~~ceVqlsYAIG~a~Pvsi~--- 319 (381)
|+||||||||||||||||||++|||||||||||||||||||||||||||||||||||+|||||||||||+++|+||+
T Consensus 240 P~gD~GLTGRKIIVDTYGG~a~HGGGAFSGKDptKVDRSaAYaARyvAKNiVAAglA~~ceVQlsYAIGva~PvSi~Vdt 319 (388)
T COG0192 240 PQGDAGLTGRKIIVDTYGGYARHGGGAFSGKDPTKVDRSAAYAARYVAKNIVAAGLADRCEVQLSYAIGVAEPVSISVDT 319 (388)
T ss_pred CCccccCccceEEEEcCCCccCCCCccCCCCCCcccchHHHHHHHHHHHHHHHhhhhhheEEEEEeEecccCceEEEEEc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ---------HHHHHHHHhcCCCchhhhhhcccCCCccchhhccccccCCCCCCCCCCccccccCCc
Q 016895 320 ---------EILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKW 376 (381)
Q Consensus 320 ---------~i~~~i~~~Fdl~p~~Ii~~L~L~~p~~~iY~~tA~yGHFGr~~~~~pWE~~d~~~~ 376 (381)
+|.++|+++|||||++||+.|+|++| ||++||+||||||++ +|||||+|+++.
T Consensus 320 fgT~kvse~~i~~~v~~~FdlrP~gIi~~LdL~~p---iY~~tAaYGHFGr~~-~~pWEk~dkv~~ 381 (388)
T COG0192 320 FGTGKVSEEKIEEAVRKVFDLRPAGIIKMLDLLRP---IYRKTAAYGHFGRED-DFPWEKLDKVDE 381 (388)
T ss_pred cCCcccCHHHHHHHHHHhcCCCHHHHHHHhccCCc---cchhcccccccCCCC-CCCccchhhHHH
Confidence 89999999999999999999999999 999999999999987 899999999864
No 2
>PLN02243 S-adenosylmethionine synthase
Probab=100.00 E-value=5.7e-180 Score=1323.80 Aligned_cols=371 Identities=94% Similarity=1.458 Sum_probs=357.6
Q ss_pred CCccceecccCCCCCChhhhhhhHHHHHHHHhhcCCCCcEEEEEEeeeCeEEEEEEeeeeeeccHHHHHHHHHHhhCCCC
Q 016895 1 METFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVS 80 (381)
Q Consensus 1 ~~~~lfTSESV~~GHPDKicDqISDaILDa~L~~Dp~arVA~E~~v~~~~v~i~GEitt~a~vd~~~ivR~~i~~IGY~~ 80 (381)
|.+||||||||++||||||||||||||||+||+|||+|||||||++++|+|+|+|||||+++||++++||++|++|||++
T Consensus 1 ~~~~lfTSESV~eGHPDKicDqISDaILDa~L~qDp~srVA~Et~v~~~~V~i~GEitt~a~vd~~~ivR~~i~~IGY~~ 80 (386)
T PLN02243 1 METFLFTSESVNEGHPDKLCDQISDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCREIGFVS 80 (386)
T ss_pred CCceEEEecCCCCCCChHHHHHHHHHHHHHHHhhCCCCcEEEEEEEECCEEEEEEEECCCCcCCHHHHHHHHHHHhCCCC
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCceEEEEeeccCChhhhccccCCCCCCCCCCCCCcccceeeeecCCCCCCCCcHHHHHHHHHHHHHHHHHcCC
Q 016895 81 DDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEDIGAGDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRKNST 160 (381)
Q Consensus 81 ~~~gfd~~~~~v~~~i~~QS~dIa~gV~~~~~~~~~~~GAGDQGimfGYA~~ET~~~MPl~i~lAh~L~~~l~~~Rk~~~ 160 (381)
+++|||+++|.|++.|++|||||+|||+.+.++..+++|||||||||||||||||+||||||+|||+|+++|+++||+|.
T Consensus 81 ~~~gfd~~t~~v~~~i~~QSpdIa~gV~~~~~~~~~~iGAGDQGimfGYA~~ET~e~MPlpi~lAh~l~~~l~~~Rk~~~ 160 (386)
T PLN02243 81 DDVGLDADKCKVLVNIEQQSPDIAQGVHGHLTKKPEEIGAGDQGHMFGYATDETPELMPLTHVLATKLGARLTEVRKNGT 160 (386)
T ss_pred cccCcCCCceEEEecCCCCChhHhhccccccccccccCCCCcceEEeeeecCCCcccCChHHHHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999985422223458999999999999999999999999999999999999999999
Q ss_pred CCcccCCcceeEEEEEecCCCceeeeEEeEEEEeeecCCCCChHHHHHHHHHhhcccccCCCCCCCCcEEEECCCCCeEE
Q 016895 161 CSWLRPDGKTQVTVEYYNDNGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNPSGRFVI 240 (381)
Q Consensus 161 ~~~l~pD~KtQVtv~Y~~~~g~~~p~rv~tivvS~QH~~~v~~~~l~~~i~e~Vi~~v~~~~~~~~~t~~~INPtG~Fvi 240 (381)
+|||||||||||||+|+++.+.++|+||++||||+||++++++++|+++|+|+||+|++|+++++++|+||||||||||+
T Consensus 161 ~~~l~PD~KsQVtv~Y~~~~~~~~p~rv~tivvS~QH~~~v~~~~l~~~i~e~vi~~v~~~~~~~~~t~~~INPtGrFvi 240 (386)
T PLN02243 161 CPWLRPDGKTQVTVEYKNEGGAMVPIRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNPSGRFVI 240 (386)
T ss_pred CCeecCCCceEEEEEeecCCCCccceeEeEEEEeeccCCCCCHHHHHHHHHHHHhHHhcCcccCCCCcEEEECCCCCeEe
Confidence 99999999999999997543534599999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCcccCCceEEEecCCCccccccccccCCCCCcccchhhhHHHHHHHHHHHhcccccceEEEEEeecCCCcccHH-
Q 016895 241 GGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVF- 319 (381)
Q Consensus 241 GGP~~DtGLTGRKiiVDTYGg~~~HGGGAfSGKDptKVDRSaAY~AR~iAKniVaaGlA~~ceVqlsYAIG~a~Pvsi~- 319 (381)
|||.||||||||||||||||||++|||||||||||||||||||||||||||||||||||+|||||||||||+++|+||+
T Consensus 241 GGP~~D~GLTGRKIiVDTYGG~~~hGGGAFSGKDptKVDRSaAY~AR~iAKniVaaglA~rceVQlsYAIGva~Pvsi~V 320 (386)
T PLN02243 241 GGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSVVAAGLARRCIVQVSYAIGVPEPLSVFV 320 (386)
T ss_pred CCCcccccccCceEEEEcCCCccCCCCccccCCCcchhhhHHHHHHHHHHHHHHhhcCCCeeEEEEEEEcccCcCcEEEE
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred -----------HHHHHHHHhcCCCchhhhhhcccCC---CccchhhccccccCCCCCCCCCCccccccC
Q 016895 320 -----------EILKIVKESFDFRPGMMTINLDLKR---GGNGRFLKTAAYGHFGRDDPDFTWEVVKPL 374 (381)
Q Consensus 320 -----------~i~~~i~~~Fdl~p~~Ii~~L~L~~---p~~~iY~~tA~yGHFGr~~~~~pWE~~d~~ 374 (381)
+|.++|+++|||||++||++|+|++ | ||++||+||||||++++|||||+|++
T Consensus 321 ~TfGT~~~~d~~i~~~v~~~Fdlrp~~Ii~~L~L~~~~~p---iY~~ta~yGHFGr~~~~fpWE~~d~~ 386 (386)
T PLN02243 321 DTYGTGKIPDKEILKIVKENFDFRPGMIAINLDLKRGGNG---RFQKTAAYGHFGRDDPDFTWEVVKPL 386 (386)
T ss_pred ecCCCCcCCHHHHHHHHHHHcCCCHHHHHHhcCCCCCCCC---cchhccccCCCCCCCCCCCccccCCC
Confidence 8999999999999999999999999 8 99999999999999889999999985
No 3
>PTZ00104 S-adenosylmethionine synthase; Provisional
Probab=100.00 E-value=4.7e-179 Score=1321.26 Aligned_cols=374 Identities=73% Similarity=1.161 Sum_probs=360.0
Q ss_pred CccceecccCCCCCChhhhhhhHHHHHHHHhhcCCCCcEEEEEEeeeCeEEEEEEeeeeeeccHHHHHHHHHHhhCCCCC
Q 016895 2 ETFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSD 81 (381)
Q Consensus 2 ~~~lfTSESV~~GHPDKicDqISDaILDa~L~~Dp~arVA~E~~v~~~~v~i~GEitt~a~vd~~~ivR~~i~~IGY~~~ 81 (381)
++||||||||+|||||||||||||||||+||+|||+|||||||++++|+|+|+|||+|+++||+++|||++|++|||+++
T Consensus 9 ~~~lfTSESVseGHPDKicDqISDaILD~~L~qDp~srVA~Et~v~~~~V~v~GEitt~a~vDi~~ivR~~i~~IGY~~~ 88 (398)
T PTZ00104 9 GHFLFTSESVSEGHPDKLCDQISDAVLDACLAQDPLSKVACETCAKTGMVMVFGEITTKAVVDYQKVVRDTVKEIGYDDT 88 (398)
T ss_pred CCEEEEecCCCCCCCcHHHHHHHHHHHHHHHhcCCCCcEEEEEEEeCCEEEEEEEEcCCccCCHHHHHHHHHHHhCCCCc
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCceEEEEeeccCChhhhccccCCCCCCCCCCCCCcccceeeeecCCCCCCCCcHHHHHHHHHHHHHHHHHcCCC
Q 016895 82 DVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEDIGAGDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRKNSTC 161 (381)
Q Consensus 82 ~~gfd~~~~~v~~~i~~QS~dIa~gV~~~~~~~~~~~GAGDQGimfGYA~~ET~~~MPl~i~lAh~L~~~l~~~Rk~~~~ 161 (381)
++|||+++|.|++.|++|||||+|||+.. ...+++|||||||||||||||||+||||||+|||+|+++|+++||+|.+
T Consensus 89 ~~gfd~~t~~v~~~i~~QSpDIa~gV~~~--~~~~~iGAGDQGimfGYA~~ET~~~MPlpi~lAh~L~~~l~~~Rk~~~~ 166 (398)
T PTZ00104 89 EKGLDYKTCNVLVAIEQQSPDIAQGVHVG--KKEEDIGAGDQGIMFGYATDETEELMPLTHELATKLAKRLSELRKNGIL 166 (398)
T ss_pred ccCcCCCceEEEecCCCCChhHhhccccc--cccccCCCCccceeeeeecCCCcccCCcHHHHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999999999842 1224589999999999999999999999999999999999999999999
Q ss_pred CcccCCcceeEEEEEecC-CCceeeeEEeEEEEeeecCCCCChHHHHHHHHHhhcccccCCCCCCCCcEEEECCCCCeEE
Q 016895 162 SWLRPDGKTQVTVEYYND-NGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNPSGRFVI 240 (381)
Q Consensus 162 ~~l~pD~KtQVtv~Y~~~-~g~~~p~rv~tivvS~QH~~~v~~~~l~~~i~e~Vi~~v~~~~~~~~~t~~~INPtG~Fvi 240 (381)
|||||||||||||+|+++ ++.++|+||+|||||+||++++++++||++|+++||+|++|.+|++++|+||||||||||+
T Consensus 167 ~~L~PD~KsQVtv~Y~~~~~~~~~P~~i~tivvS~QH~~~v~~~~l~~~i~~~vi~~v~~~~~~~~~t~~~INPtGrFvi 246 (398)
T PTZ00104 167 PWLRPDAKTQVTVEYEYDTRGGLTPKRVHTILISTQHDEGVSNEEIREDLMEHVIKPVIPAKLLDEETKYHLNPSGRFVI 246 (398)
T ss_pred CeeccCCceEEEEEeccCCCCCccceeEEEEEEccccCCCCCHHHHHHHHHHHHHHHhcCcccCCCCcEEEECCCCCeEe
Confidence 999999999999999653 1125899999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCcccCCceEEEecCCCccccccccccCCCCCcccchhhhHHHHHHHHHHHhcccccceEEEEEeecCCCcccHH-
Q 016895 241 GGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVF- 319 (381)
Q Consensus 241 GGP~~DtGLTGRKiiVDTYGg~~~HGGGAfSGKDptKVDRSaAY~AR~iAKniVaaGlA~~ceVqlsYAIG~a~Pvsi~- 319 (381)
|||.||||||||||||||||||++|||||||||||||||||||||||||||||||||||+|||||||||||+++||||+
T Consensus 247 GGP~gDtGLTGRKIiVDTYGG~a~HGGGAFSGKDptKVDRSaAY~ARyiAKniVAAGlA~~ceVQlsYAIGva~Pvsi~V 326 (398)
T PTZ00104 247 GGPHGDAGLTGRKIIVDTYGGWGAHGGGAFSGKDPSKVDRSAAYAARWIAKSLVAAGLCKRCLVQVSYAIGVAEPLSIHV 326 (398)
T ss_pred CCCcccccccCceEEEEcCCCccCCCCccccCCCcchhhhHHHHHHHHHHHHHHhhccccceEEEEEEEcccCCCceeEE
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred -------------HHHHHHHHhcCCCchhhhhhcccCCCccchhhccccccCCCCCCCCCCccccccCCcCCCC
Q 016895 320 -------------EILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEKPQ 380 (381)
Q Consensus 320 -------------~i~~~i~~~Fdl~p~~Ii~~L~L~~p~~~iY~~tA~yGHFGr~~~~~pWE~~d~~~~~~~~ 380 (381)
+|.++|+++|||||++||++|+|++| ||++||+||||||++++||||++|+++++++-
T Consensus 327 ~TfGT~~~~~~~~~i~~~v~~~Fdl~P~~II~~L~L~~P---iY~~ta~yGHFGr~~~~f~WE~~d~~~~~~~~ 397 (398)
T PTZ00104 327 NTYGTGKKGYDDEDLLEIVQKNFDLRPGDIIKELDLRRP---IFQKTASYGHFGRSDPEFTWEVPKDLEHEKDV 397 (398)
T ss_pred ecCCCcccCCCHHHHHHHHHHHcCCCHHHHHHHhCCCCh---hhhhhhccCccCCCCCCCCccccchhcccccC
Confidence 78999999999999999999999999 99999999999999888999999999999864
No 4
>PRK05250 S-adenosylmethionine synthetase; Validated
Probab=100.00 E-value=3.4e-178 Score=1311.76 Aligned_cols=363 Identities=62% Similarity=1.003 Sum_probs=354.5
Q ss_pred ccceecccCCCCCChhhhhhhHHHHHHHHhhcCCCCcEEEEEEeeeCeEEEEEEeeeeeeccHHHHHHHHHHhhCCCCCC
Q 016895 3 TFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDD 82 (381)
Q Consensus 3 ~~lfTSESV~~GHPDKicDqISDaILDa~L~~Dp~arVA~E~~v~~~~v~i~GEitt~a~vd~~~ivR~~i~~IGY~~~~ 82 (381)
+||||||||+|||||||||||||||||+||+|||+|||||||++++|+|+|+|||+|+++||++++||++|++|||++++
T Consensus 2 ~~lfTSESV~eGHPDKicDqISDaILD~~L~~Dp~srVA~Et~v~~~~V~i~GEitt~a~vD~~~ivR~~i~~IGY~~~~ 81 (384)
T PRK05250 2 RYLFTSESVSEGHPDKIADQISDAILDAILAQDPNARVACETLVTTGLVVVAGEITTSAYVDIEEIVRETIKEIGYTSSE 81 (384)
T ss_pred CceEeecCCCCCCCcHHHHHHHHHHHHHHHhhCCCCcEEEEEEeecCeEEEEEEEeCCccCCHHHHHHHHHHHcCCCCcc
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCceEEEEeeccCChhhhccccCCCCCCCCCCCCCcccceeeeecCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCC
Q 016895 83 VGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEDIGAGDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRKNSTCS 162 (381)
Q Consensus 83 ~gfd~~~~~v~~~i~~QS~dIa~gV~~~~~~~~~~~GAGDQGimfGYA~~ET~~~MPl~i~lAh~L~~~l~~~Rk~~~~~ 162 (381)
+|||+++|.|+++|++|||||+|||+.. ..+++|||||||||||||||||+|||||++|||+|+++|+++||+|.+|
T Consensus 82 ~gfd~~~~~v~~~i~~QSpdIa~gV~~~---~~~~~GAGDQGimfGYA~~ET~~~MPl~i~lAh~l~~~l~~~Rk~~~~~ 158 (384)
T PRK05250 82 YGFDANTCAVLVSIGEQSPDIAQGVDRD---ELDEIGAGDQGIMFGYACNETPELMPLPITLAHRLVRRLAEVRKSGTLP 158 (384)
T ss_pred cCcCCCceEEEeecCCCChhHHhhhCcc---ccccCCCCCceeeeeeecCCCcccCChHHHHHHHHHHHHHHHHhcCCCC
Confidence 9999999999999999999999999852 2356899999999999999999999999999999999999999999999
Q ss_pred cccCCcceeEEEEEecCCCceeeeEEeEEEEeeecCCCCChHHHHHHHHHhhcccccCCCCCCCCcEEEECCCCCeEEcC
Q 016895 163 WLRPDGKTQVTVEYYNDNGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNPSGRFVIGG 242 (381)
Q Consensus 163 ~l~pD~KtQVtv~Y~~~~g~~~p~rv~tivvS~QH~~~v~~~~l~~~i~e~Vi~~v~~~~~~~~~t~~~INPtG~FviGG 242 (381)
||||||||||||+|++ + +|+||++||||+||++++++++||++|+|+||+|++|++|++++|+||||||||||+||
T Consensus 159 ~l~PD~KtQVtv~Y~~--~--~p~~i~tiviS~QH~~~~~~~~l~~~i~e~vi~~v~~~~~~~~~t~~~INPtG~FviGG 234 (384)
T PRK05250 159 YLRPDAKSQVTVEYEN--G--KPVRIDTIVVSTQHDPDVSQEQLREDVIEEVIKPVLPAELLDEDTKFLINPTGRFVIGG 234 (384)
T ss_pred eecCCCceEEEEEEEC--C--ceeeEEEEEEeccCCCCCCHHHHHHHHHHHHhHHhcccccCCCCeEEEECCCCCeEeCC
Confidence 9999999999999974 5 89999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcccCCceEEEecCCCccccccccccCCCCCcccchhhhHHHHHHHHHHHhcccccceEEEEEeecCCCcccHH---
Q 016895 243 PHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVF--- 319 (381)
Q Consensus 243 P~~DtGLTGRKiiVDTYGg~~~HGGGAfSGKDptKVDRSaAY~AR~iAKniVaaGlA~~ceVqlsYAIG~a~Pvsi~--- 319 (381)
|+||||||||||||||||||++|||||||||||||||||||||||||||||||||||+|||||||||||+++|+||+
T Consensus 235 P~gDtGLTGRKIiVDTYGG~a~hGGGAFSGKDptKVDRSaAY~AR~iAKniVaaglA~~ceVQlsYAIGva~Pvsi~Vdt 314 (384)
T PRK05250 235 PQGDAGLTGRKIIVDTYGGYARHGGGAFSGKDPTKVDRSAAYAARYVAKNIVAAGLADRCEVQLSYAIGVAEPVSIYVDT 314 (384)
T ss_pred CcccccccCceEEEEcCCcccccCCccccCCCcchhhhHHHHHHHHHHHHHHhhcCCCceEEEEEEeeccccCceEEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ---------HHHHHHHHhcCCCchhhhhhcccCCCccchhhccccccCCCCCCCCCCccccccCC
Q 016895 320 ---------EILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLK 375 (381)
Q Consensus 320 ---------~i~~~i~~~Fdl~p~~Ii~~L~L~~p~~~iY~~tA~yGHFGr~~~~~pWE~~d~~~ 375 (381)
+|.++|+++|||||++||++|+|++| ||++||+||||||++++|||||+|+++
T Consensus 315 fGt~~~~~~~i~~~v~~~Fdl~P~~Ii~~L~L~~p---iY~~ta~yGHFGr~~~~fpWE~~d~v~ 376 (384)
T PRK05250 315 FGTGKVSDEKIEEAVREVFDLRPAGIIKMLDLRRP---IYRKTAAYGHFGREDLDFPWEKTDKVE 376 (384)
T ss_pred CCCCCCCHHHHHHHHHHHcCCCHHHHHHHhCCCCc---cchhhcccCCCCCCCCCCCCcccchHH
Confidence 89999999999999999999999999 999999999999998889999999876
No 5
>PRK12459 S-adenosylmethionine synthetase; Provisional
Probab=100.00 E-value=4.4e-178 Score=1311.66 Aligned_cols=364 Identities=59% Similarity=0.958 Sum_probs=351.7
Q ss_pred CCccceecccCCCCCChhhhhhhHHHHHHHHhhcCCCCcEEEEEEeeeCeEEEEEEeeeeeeccHHHHHHHHHHhhCCCC
Q 016895 1 METFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVS 80 (381)
Q Consensus 1 ~~~~lfTSESV~~GHPDKicDqISDaILDa~L~~Dp~arVA~E~~v~~~~v~i~GEitt~a~vd~~~ivR~~i~~IGY~~ 80 (381)
|.+||||||||++||||||||||||||||+||+|||+|||||||++++|+|+|+|||||+++||+++|||++|++|||+
T Consensus 1 m~~~lfTSESV~eGHPDKicDqISDaILDa~L~qDp~srVA~Et~v~~~~V~v~GEitt~a~vdi~~ivR~~i~~IGY~- 79 (386)
T PRK12459 1 MSTFLFTSESVTEGHPDKLCDQISDAILDACLRQDPASRVACEVLVSTGIVIVAGEITSSAKVDIEKIVRNVIKEIGYD- 79 (386)
T ss_pred CCceeEEecCCCCCCccHHHhhHHHHHHHHHHhhCCCCcEEEEEEeecCeEEEEEEEccCccCCHHHHHHHHHHHhCCC-
Confidence 6679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCceEEEEeeccCChhhhccccCCCC--CCCCCCCCCcccceeeeecCCCCCCCCcHHHHHHHHHHHHHHHHHc
Q 016895 81 DDVGLDADHCKVLVNIEQQSPDIAQGVHGHFT--KRPEDIGAGDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRKN 158 (381)
Q Consensus 81 ~~~gfd~~~~~v~~~i~~QS~dIa~gV~~~~~--~~~~~~GAGDQGimfGYA~~ET~~~MPl~i~lAh~L~~~l~~~Rk~ 158 (381)
++|||+++|.|+++|++|||||+|||+...+ +..+++|||||||||||||||||+||||||+|||+|+++|+++||+
T Consensus 80 -~~gfd~~t~~v~~~i~~QSpdIa~gV~~~~~~~~~~~~iGAGDQGimfGYA~~ET~~~MPlpi~lAh~l~~~l~~~Rk~ 158 (386)
T PRK12459 80 -ELGFDPRTCTVLVSLGEQSPDIAQGVDTAEGRDEELEELGAGDQGTMFGYACDETPELMPLPIVLAHRLAKRLDQARKD 158 (386)
T ss_pred -CCCCCCCceEEEeccccCChhHhcccccccccccccccCCCCcceEeeeeecCCCcccCChHHHHHHHHHHHHHHHHhc
Confidence 8999999999999999999999999974321 1124689999999999999999999999999999999999999999
Q ss_pred CCCCcccCCcceeEEEEEecCCCceeeeEEeEEEEeeecCCCCChHHHHHHHHHhhcccccCCCCCCCCcEEEECCCCCe
Q 016895 159 STCSWLRPDGKTQVTVEYYNDNGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNPSGRF 238 (381)
Q Consensus 159 ~~~~~l~pD~KtQVtv~Y~~~~g~~~p~rv~tivvS~QH~~~v~~~~l~~~i~e~Vi~~v~~~~~~~~~t~~~INPtG~F 238 (381)
|.+|||||||||||||+|++ + +|+||+|||||+||++++++++++++|+|+||+|++|++|++++|+|||||||||
T Consensus 159 g~~~~l~PD~KsQVtv~Y~~--~--~P~rv~tivvS~QH~~~v~~~~~~~~i~e~vi~~v~~~~~~~~~t~~~INPtGrF 234 (386)
T PRK12459 159 GLLPGLLPDGKTQVTVEYED--G--RPVRVDTIVVSAQHDESVDLETLRRDVIENVIKPVFEDFWLDDETRILINPTGRF 234 (386)
T ss_pred CCCCeecCCCceEEEEEeeC--C--ceeEEEEEEEeeccCCCCCHHHHHHHHHHHHHHHhcCcccCCCCcEEEECCCCCe
Confidence 99999999999999999974 5 8999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCCCcccCCceEEEecCCCccccccccccCCCCCcccchhhhHHHHHHHHHHHhcccccceEEEEEeecCCCcccH
Q 016895 239 VIGGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSV 318 (381)
Q Consensus 239 viGGP~~DtGLTGRKiiVDTYGg~~~HGGGAfSGKDptKVDRSaAY~AR~iAKniVaaGlA~~ceVqlsYAIG~a~Pvsi 318 (381)
|+|||+||||||||||||||||||++|||||||||||||||||||||||||||||||||||+|||||||||||+++|+||
T Consensus 235 viGGP~gD~GLTGRKIiVDTYGG~~~HGGGAFSGKDptKVDRSaAY~AR~iAKniVaAGlA~~ceVQlsYAIGva~Pvsi 314 (386)
T PRK12459 235 VVGGPAADTGLTGRKIMVDTYGGYARHGGGAFSGKDPSKVDRSAAYAARYIAKNIVAAGLAKRCEVQLSYAIGKARPVSV 314 (386)
T ss_pred EeCCCcccccccCceEEEEcCCcccccCCccccCCCcchhhhHHHHHHHHHHHHHHhhcCccceEEEEEEeecccccceE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred H------------HHHHHHHHhcCCCchhhhhhcccCCCccchhhccccccCCCCCCCCCCccccccCC
Q 016895 319 F------------EILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLK 375 (381)
Q Consensus 319 ~------------~i~~~i~~~Fdl~p~~Ii~~L~L~~p~~~iY~~tA~yGHFGr~~~~~pWE~~d~~~ 375 (381)
+ +|.++|+++|||||++||++|+|++| ||++||+||||||+ +||||++|+++
T Consensus 315 ~V~TfGT~~~~~~~i~~~i~~~Fdl~P~~Ii~~L~L~~p---iY~~ta~yGHFGr~--~f~WE~~d~~~ 378 (386)
T PRK12459 315 QVNTFGTGTVSDEELTRAVREHFDLRPAGIIEKLNLRNP---IYRKTAAYGHFGRT--LFPWEKTDKAA 378 (386)
T ss_pred EEEeCCCCCCCHHHHHHHHHHHcCCCHHHHHHHcCCCCc---hhhhhcccCCCCCC--CCCcccccHHH
Confidence 9 89999999999999999999999999 99999999999997 59999999876
No 6
>TIGR01034 metK S-adenosylmethionine synthetase. Tandem isozymes of this S-adenosylmethionine synthetase in E. coli are designated MetK and MetX.
Probab=100.00 E-value=1.5e-177 Score=1303.51 Aligned_cols=360 Identities=62% Similarity=1.017 Sum_probs=350.5
Q ss_pred ceecccCCCCCChhhhhhhHHHHHHHHhhcCCCCcEEEEEEeeeCeEEEEEEeeeeeeccHHHHHHHHHHhhCCCCCCCC
Q 016895 5 LFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDDVG 84 (381)
Q Consensus 5 lfTSESV~~GHPDKicDqISDaILDa~L~~Dp~arVA~E~~v~~~~v~i~GEitt~a~vd~~~ivR~~i~~IGY~~~~~g 84 (381)
|||||||++||||||||||||||||+||+|||+|||||||++++|+|+|+|||||+++||+++|||++|++|||+++++|
T Consensus 1 lfTSESV~eGHPDKicDqISDaILD~~L~~Dp~srVA~Et~v~~~~V~i~GEitt~~~vd~~~ivR~~i~~IGY~~~~~g 80 (377)
T TIGR01034 1 LFTSESVSEGHPDKIADQISDAVLDAILKQDPKAKVACETFVKTGLVLIGGEITTSAYVDIQEVARNTIKDIGYTDSDYG 80 (377)
T ss_pred CCccCcCCCCCCcHHHHHHHHHHHHHHHhhCCCCcEEEEEEeecCeEEEEEEEcCCccCCHHHHHHHHHHHhCCCCcccC
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceEEEEeeccCChhhhccccCCCCCCCCCCCCCcccceeeeecCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCcc
Q 016895 85 LDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEDIGAGDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRKNSTCSWL 164 (381)
Q Consensus 85 fd~~~~~v~~~i~~QS~dIa~gV~~~~~~~~~~~GAGDQGimfGYA~~ET~~~MPl~i~lAh~L~~~l~~~Rk~~~~~~l 164 (381)
||+++|.|+++|++|||||+|||+++ ..+++|||||||||||||||||+||||||+|||+|+++|+++||+|++|||
T Consensus 81 fd~~t~~v~~~i~~QSpDIa~gV~~~---~~~~iGAGDQGimfGYA~~ET~e~MPl~i~lAh~l~~~l~~~Rk~g~~~~l 157 (377)
T TIGR01034 81 FDAKTCAVLVAIGNQSPDIAQGVDKA---NPEEQGAGDQGIMFGYATNETPELMPLPITLAHKLLKRAAELRKSGTLPWL 157 (377)
T ss_pred CCCCceEEEecCCCCChHHHhccccC---ccccCCCCcceeeeeeecCCCcccCChHHHHHHHHHHHHHHHHhcCCCCee
Confidence 99999999999999999999999852 123589999999999999999999999999999999999999999999999
Q ss_pred cCCcceeEEEEEecCCCceeeeEEeEEEEeeecCCCCChHHHHHHHHHhhcccccCCCCCCCCcEEEECCCCCeEEcCCC
Q 016895 165 RPDGKTQVTVEYYNDNGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNPSGRFVIGGPH 244 (381)
Q Consensus 165 ~pD~KtQVtv~Y~~~~g~~~p~rv~tivvS~QH~~~v~~~~l~~~i~e~Vi~~v~~~~~~~~~t~~~INPtG~FviGGP~ 244 (381)
||||||||||+|++ + +|+||+|||||+||++++++++++++|+|+||+|++|++|++++|+||||||||||+|||+
T Consensus 158 ~PD~KtQVtveY~~--~--~P~rv~tivvS~QH~~~v~~~~l~~~i~~~vi~~v~~~~~~~~~t~~~INPtGrFviGGP~ 233 (377)
T TIGR01034 158 RPDGKSQVTVQYED--N--KPVRVDTIVLSTQHDPDISQKDLREAIIEEIIKPVLPAEYLDEKTKFFINPTGRFVIGGPM 233 (377)
T ss_pred cCCCceEEEEEEEC--C--ceeEEEEEEEecCCCCCCCHHHHHHHHHHHHhHHhcCcccCCCCcEEEECCCCCeEeCCCc
Confidence 99999999999964 5 7999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccCCceEEEecCCCccccccccccCCCCCcccchhhhHHHHHHHHHHHhcccccceEEEEEeecCCCcccHH-----
Q 016895 245 GDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVF----- 319 (381)
Q Consensus 245 ~DtGLTGRKiiVDTYGg~~~HGGGAfSGKDptKVDRSaAY~AR~iAKniVaaGlA~~ceVqlsYAIG~a~Pvsi~----- 319 (381)
||||||||||||||||||++|||||||||||||||||||||||||||||||||||+|||||||||||+++|+||+
T Consensus 234 gDtGLTGRKIiVDTYGG~~~hGGGAFSGKDptKVDRSaAY~AR~iAKniVaAgla~~c~VQlsYaIGva~Pvsi~V~tfG 313 (377)
T TIGR01034 234 GDTGLTGRKIIVDTYGGWARHGGGAFSGKDPSKVDRSAAYAARYIAKNIVAAGLADRCEVQLSYAIGVAEPVSIMIETFG 313 (377)
T ss_pred cccccccceEEEeccCcccccCCccccCCCcchhhhHHHHHHHHHHHHHHhhcCcceeEEEEEEEcCcCCCceEEEEcCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred -------HHHHHHHHhcCCCchhhhhhcccCCCccchhhccccccCCCCCCCCCCccccccCCc
Q 016895 320 -------EILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKW 376 (381)
Q Consensus 320 -------~i~~~i~~~Fdl~p~~Ii~~L~L~~p~~~iY~~tA~yGHFGr~~~~~pWE~~d~~~~ 376 (381)
+|.++|+++|||||++||++|+|++| ||++||+||||||+ +||||++|+++.
T Consensus 314 T~~~~~~~i~~~v~~~FdlrP~~Ii~~L~L~~p---iY~~ta~yGHFGr~--~~~WE~~d~~~~ 372 (377)
T TIGR01034 314 TSKKSEEELLNVVKENFDLRPGGIIEKLDLLKP---IYRKTAVYGHFGRE--EFPWEKPDKLEE 372 (377)
T ss_pred CccCCHHHHHHHHHHhcCCCHHHHHHHhCCCCc---hhhhhcccCCCCCC--CCCccccchHHH
Confidence 89999999999999999999999999 99999999999997 599999998763
No 7
>KOG1506 consensus S-adenosylmethionine synthetase [Coenzyme transport and metabolism]
Probab=100.00 E-value=3.3e-171 Score=1220.80 Aligned_cols=368 Identities=74% Similarity=1.179 Sum_probs=361.0
Q ss_pred CccceecccCCCCCChhhhhhhHHHHHHHHhhcCCCCcEEEEEEeeeCeEEEEEEeeeeeeccHHHHHHHHHHhhCCCCC
Q 016895 2 ETFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSD 81 (381)
Q Consensus 2 ~~~lfTSESV~~GHPDKicDqISDaILDa~L~~Dp~arVA~E~~v~~~~v~i~GEitt~a~vd~~~ivR~~i~~IGY~~~ 81 (381)
.+||||||||+||||||||||||||||||||+|||+|+|||||..++|||++.|||||+|.|||+++||++++.|||+++
T Consensus 4 ~tFLFTSESVgEGHPDKmCDQISDAiLDAhLkqDP~aKVACETv~KTgMiml~GEITska~vDYqkvVR~tik~IGydds 83 (383)
T KOG1506|consen 4 ETFLFTSESVGEGHPDKMCDQISDAILDAHLKQDPNAKVACETVTKTGMIMLCGEITSKAVVDYQKVVRDTIKKIGYDDS 83 (383)
T ss_pred ceeEEeeccccCCCchHHHHHHHHHHHHHHhhcCCCceeeeeeccccceEEEeeeccchhhhhHHHHHHHHHHHhCCccc
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCceEEEEeeccCChhhhccccCCCCCCCCCCCCCcccceeeeecCCCCCCCCcHHHHHHHHHHHHHHHHHcCCC
Q 016895 82 DVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEDIGAGDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRKNSTC 161 (381)
Q Consensus 82 ~~gfd~~~~~v~~~i~~QS~dIa~gV~~~~~~~~~~~GAGDQGimfGYA~~ET~~~MPl~i~lAh~L~~~l~~~Rk~~~~ 161 (381)
..|||++||+|+++|++|||||||||+- ++..+++||||||||||||||||||+|||++.|||+|..+|+++|++|++
T Consensus 84 skGfD~ktcnvLvaieQQSPdIAqgvH~--~k~~edvGAGDQgimfGYATdet~e~mplt~~lahkln~~l~~~rr~g~l 161 (383)
T KOG1506|consen 84 SKGFDYKTCNVLVAIEQQSPDIAQGVHV--DKDEEDVGAGDQGIMFGYATDETPECMPLTIVLAHKLNAKLAELRRNGTL 161 (383)
T ss_pred ccCccccccceeeeecccCchhhhcccc--cCCHhHcCCCcceeEeeeecCCCccccchHHHHHHHHHHHHHhhcccCcc
Confidence 9999999999999999999999999994 45667899999999999999999999999999999999999999999999
Q ss_pred CcccCCcceeEEEEEecCCCceeeeEEeEEEEeeecCCCCChHHHHHHHHHhhcccccCCCCCCCCcEEEECCCCCeEEc
Q 016895 162 SWLRPDGKTQVTVEYYNDNGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNPSGRFVIG 241 (381)
Q Consensus 162 ~~l~pD~KtQVtv~Y~~~~g~~~p~rv~tivvS~QH~~~v~~~~l~~~i~e~Vi~~v~~~~~~~~~t~~~INPtG~FviG 241 (381)
||||||+|||||+||.+++|++.|.||||||||+||+++|++++||++++|+||++|+|++++|++|.|||||+||||||
T Consensus 162 ~WlRpdsktqVTvey~~~~Ga~vP~rVhtvviS~QH~~~is~~~lr~~l~e~vik~viPa~~lDe~Tiyhl~PsGrFviG 241 (383)
T KOG1506|consen 162 PWLRPDSKTQVTVEYMNDNGAMVPLRVHTVVISTQHSEDITLDDLRAELKEKVIKPVIPAKYLDEKTIYHLNPSGRFVIG 241 (383)
T ss_pred cccccCCcceEEEEEecCCCceeeeEEEEEEEecccCccccHHHHHHHHHHhhhhhcCcHhhcCccceEEecCCccEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcccCCceEEEecCCCccccccccccCCCCCcccchhhhHHHHHHHHHHHhcccccceEEEEEeecCCCcccHH--
Q 016895 242 GPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVF-- 319 (381)
Q Consensus 242 GP~~DtGLTGRKiiVDTYGg~~~HGGGAfSGKDptKVDRSaAY~AR~iAKniVaaGlA~~ceVqlsYAIG~a~Pvsi~-- 319 (381)
||+||+|||||||||||||||+.||||||||||||||||||||+|||+||++|+||||+||+||+|||||+++|+|++
T Consensus 242 GP~GDAGlTGRKIIvDtYGGwgahGGGAFSGKD~tKVDRSaAYaaRwvAkSlV~aGl~rR~lVQvSYAIGvaePlSv~v~ 321 (383)
T KOG1506|consen 242 GPQGDAGLTGRKIIVDTYGGWGAHGGGAFSGKDPTKVDRSAAYAARWVAKSLVAAGLCRRCLVQVSYAIGVAEPLSVFVF 321 (383)
T ss_pred CCCcccccccceEEEeccCcccccCCcccCCCCccccchHHHHHHHHHHHHHHHhhhhhheeeEEeeeecCCCceEEEEE
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ----------HHHHHHHHhcCCCchhhhhhcccCCCccchhhccccccCCCCCCCCCCccccccCCc
Q 016895 320 ----------EILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKW 376 (381)
Q Consensus 320 ----------~i~~~i~~~Fdl~p~~Ii~~L~L~~p~~~iY~~tA~yGHFGr~~~~~pWE~~d~~~~ 376 (381)
+|.++|+++|||||+.|+++|+|++| ||.+||+|||||+. +||||++.++++
T Consensus 322 ~ygTs~~s~~ell~iv~~nFDlrPG~ivk~LdLkrp---iy~~Ta~yGHFg~~--~f~WE~pk~Lk~ 383 (383)
T KOG1506|consen 322 TYGTSTKSDKELLEIVKKNFDLRPGMIVKNLDLKRP---IYLKTAAYGHFGDQ--EFPWEVPKPLKI 383 (383)
T ss_pred eccCCCCCHHHHHHHHHhccCCCCceEEeecccccc---cccccccccccCCC--CCCccccccCCC
Confidence 89999999999999999999999999 99999999999975 599999998864
No 8
>PF02773 S-AdoMet_synt_C: S-adenosylmethionine synthetase, C-terminal domain; InterPro: IPR022630 The three domains of S-adenosylmethionine synthetase have the same alpha+beta fold. This entry represents the C-terminal domain of S=adenosylmethionine synthetase and is found in association with PF00438 from PFAM and PF02772 from PFAM. S-adenosylmethionine synthetase (MAT, 2.5.1.6 from EC) is the enzyme that catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP []. AdoMet is an important methyl donor for transmethylation and is also the propylamino donor in polyamine biosynthesis. In bacteria there is a single isoform of AdoMet synthetase (gene metK), there are two in budding yeast (genes SAM1 and SAM2) and in mammals while in plants there is generally a multigene family. The sequence of AdoMet synthetase is highly conserved throughout isozymes and species. The active sites of both the Escherichia coli and rat liver MAT reside between two subunits, with contributions from side chains of residues from both subunits, resulting in a dimer as the minimal catalytic entity. The side chains that contribute to the ligand binding sites are conserved between the two proteins. In the structures of complexes with the E. coli enzyme, the phosphate groups have the same positions in the (PPi plus Pi) complex and the (ADP plus Pi) complex, and are located at the bottom of a deep cavity with the adenosyl group nearer the entrance []; GO: 0004478 methionine adenosyltransferase activity; PDB: 3IML_B 1QM4_B 1O9T_B 1O93_A 1O92_B 1O90_A 1FUG_A 1RG9_D 1XRA_A 1P7L_C ....
Probab=100.00 E-value=6.3e-77 Score=520.56 Aligned_cols=126 Identities=71% Similarity=1.236 Sum_probs=111.4
Q ss_pred EcCCCCCcccCCceEEEecCCCccccccccccCCCCCcccchhhhHHHHHHHHHHHhcccccceEEEEEeecCCCcccHH
Q 016895 240 IGGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVF 319 (381)
Q Consensus 240 iGGP~~DtGLTGRKiiVDTYGg~~~HGGGAfSGKDptKVDRSaAY~AR~iAKniVaaGlA~~ceVqlsYAIG~a~Pvsi~ 319 (381)
||||+|||||||||||||||||+++|||||||||||||||||||||||||||||||||||+|||||||||||+++|+||+
T Consensus 1 iGGp~~D~GlTGRKiivDtYGg~~~hGGGafSGKD~tKvDRsaaY~aR~iAKniVaagla~~c~vqlsYaIGv~~P~si~ 80 (138)
T PF02773_consen 1 IGGPQGDTGLTGRKIIVDTYGGWARHGGGAFSGKDPTKVDRSAAYMARYIAKNIVAAGLAKRCEVQLSYAIGVAEPVSIY 80 (138)
T ss_dssp S-TTTTSEEETTSSTTTTTTTTSSB-BS---TTB-TTSHHHHHHHHHHHHHHHHHHTTSBSEEEEEEEE-TT-SS-SEEE
T ss_pred CCCCccccccccceEEEecccCceecCCccccCCChhhhhccHHHHHHHHHHHHHHccchHHHHhhceeeeccccCcccE
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ------------HHHHHHHHhcCCCchhhhhhcccCCCccchhhccccccCCCCCCCCCCccc
Q 016895 320 ------------EILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEV 370 (381)
Q Consensus 320 ------------~i~~~i~~~Fdl~p~~Ii~~L~L~~p~~~iY~~tA~yGHFGr~~~~~pWE~ 370 (381)
+|.++|+++|||||++||++|+|++| ||++||+||||||++ |||||
T Consensus 81 v~tfgT~~~~d~~i~~~I~~~Fdl~P~~II~~L~L~~P---iY~~TA~yGHFGr~~--~~WE~ 138 (138)
T PF02773_consen 81 VDTFGTGKISDEEILEIIKENFDLRPAGIIKELDLRRP---IYRKTAAYGHFGRED--FPWEK 138 (138)
T ss_dssp EEETT-BSS-HHHHHHHHHHHS--SHHHHHHHCTTTSS---THGGGGSS-SSSSTT--SGGG-
T ss_pred EEeCCCccchHHHHHHHHHHHhCCcHHHHHHHhCcCCc---hhHhhhCcCCCCCCC--CCCCC
Confidence 89999999999999999999999999 999999999999976 99997
No 9
>PF02772 S-AdoMet_synt_M: S-adenosylmethionine synthetase, central domain; InterPro: IPR022629 The three domains of S-adenosylmethionine synthetase have the same alpha+beta fold. This entry represents the central domain and is found in association with PF00438 from PFAM and PF02773 from PFAM. S-adenosylmethionine synthetase (MAT, 2.5.1.6 from EC) is the enzyme that catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP []. AdoMet is an important methyl donor for transmethylation and is also the propylamino donor in polyamine biosynthesis. In bacteria there is a single isoform of AdoMet synthetase (gene metK), there are two in budding yeast (genes SAM1 and SAM2) and in mammals while in plants there is generally a multigene family. The sequence of AdoMet synthetase is highly conserved throughout isozymes and species. The active sites of both the Escherichia coli and rat liver MAT reside between two subunits, with contributions from side chains of residues from both subunits, resulting in a dimer as the minimal catalytic entity. The side chains that contribute to the ligand binding sites are conserved between the two proteins. In the structures of complexes with the E. coli enzyme, the phosphate groups have the same positions in the (PPi plus Pi) complex and the (ADP plus Pi) complex, and are located at the bottom of a deep cavity with the adenosyl group nearer the entrance []; GO: 0004478 methionine adenosyltransferase activity; PDB: 3S82_B 2OBV_A 3RV2_A 1FUG_A 1RG9_D 1XRA_A 1P7L_C 1XRB_A 1MXA_A 1MXB_A ....
Probab=100.00 E-value=1.5e-56 Score=386.28 Aligned_cols=119 Identities=64% Similarity=1.034 Sum_probs=108.0
Q ss_pred CCCCCcccceeeeecCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCcccCCcceeEEEEEecCCCceeeeEEeEEEEeee
Q 016895 117 DIGAGDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRKNSTCSWLRPDGKTQVTVEYYNDNGAMVPVRVHTVLISTQ 196 (381)
Q Consensus 117 ~~GAGDQGimfGYA~~ET~~~MPl~i~lAh~L~~~l~~~Rk~~~~~~l~pD~KtQVtv~Y~~~~g~~~p~rv~tivvS~Q 196 (381)
++|||||||||||||||||+||||||+|||+|+++|+++|++|.+|||||||||||||+|+++ + +|+||++||||+|
T Consensus 2 ~~GAGDQGimfGYA~~ET~~~MPl~i~lAh~L~~~l~~~R~~~~~~~l~PD~KsQVtveY~~~-~--~P~ri~tivvS~Q 78 (120)
T PF02772_consen 2 EIGAGDQGIMFGYACDETPELMPLPIVLAHRLARRLAEVRKNGELPWLRPDGKSQVTVEYDEN-G--KPVRIDTIVVSTQ 78 (120)
T ss_dssp CCSBSS-EEEEEEEETTSTTSS-HHHHHHHHHHHHHHHHHHTSSSTTEEEEEEEEEEEEEEET-T--EEEEEEEEEEEEE
T ss_pred CcCcCcceEEEeeEcCCCCccCChHHHHHHHHHHHHHHHHhcccCcccCCCcceeEEEeeccC-C--ceeeeeEEEEEec
Confidence 689999999999999999999999999999999999999999999999999999999999654 5 9999999999999
Q ss_pred cCCCCChHHHHHHHHHhhcccccCCCCCCCCcEEEECCCCCe
Q 016895 197 HDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNPSGRF 238 (381)
Q Consensus 197 H~~~v~~~~l~~~i~e~Vi~~v~~~~~~~~~t~~~INPtG~F 238 (381)
|+++++++++|++|+++||+|++++++++++|+|+|||||||
T Consensus 79 H~~~i~~~~ir~~i~e~Vi~~v~~~~~~~~~t~~~INPtGrF 120 (120)
T PF02772_consen 79 HDEDISLEEIREDIKEKVIKPVIPEYLLDEDTKILINPTGRF 120 (120)
T ss_dssp E-TTS-HHHHHHHHHHHTHHHHSHGGG-BTT-EEEESTTS--
T ss_pred CCCCCCHHHHHHHHHHHHHHHhcccccCCCCcEEEECCCCCC
Confidence 999999999999999999999999999999999999999998
No 10
>PF00438 S-AdoMet_synt_N: S-adenosylmethionine synthetase, N-terminal domain; InterPro: IPR022628 The three domains of S-adenosylmethionine synthetase have the same alpha+beta fold. This entry represents the N-terminal domain of S-adenosylmethionine synthetase and is found in association with PF02772 from PFAM and PF02773 from PFAM. S-adenosylmethionine synthetase (MAT, 2.5.1.6 from EC) is the enzyme that catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP []. AdoMet is an important methyl donor for transmethylation and is also the propylamino donor in polyamine biosynthesis. In bacteria there is a single isoform of AdoMet synthetase (gene metK), there are two in budding yeast (genes SAM1 and SAM2) and in mammals while in plants there is generally a multigene family. The sequence of AdoMet synthetase is highly conserved throughout isozymes and species. The active sites of both the Escherichia coli and rat liver MAT reside between two subunits, with contributions from side chains of residues from both subunits, resulting in a dimer as the minimal catalytic entity. The side chains that contribute to the ligand binding sites are conserved between the two proteins. In the structures of complexes with the E. coli enzyme, the phosphate groups have the same positions in the (PPi plus Pi) complex and the (ADP plus Pi) complex, and are located at the bottom of a deep cavity with the adenosyl group nearer the entrance []; GO: 0004478 methionine adenosyltransferase activity; PDB: 3RV2_A 3TDE_B 3S82_B 3IML_B 2P02_A 2OBV_A 1QM4_B 1O9T_B 1O93_A 1O92_B ....
Probab=100.00 E-value=1.3e-48 Score=327.71 Aligned_cols=100 Identities=61% Similarity=1.034 Sum_probs=93.1
Q ss_pred CccceecccCCCCCChhhhhhhHHHHHHHHhhcCCCCcEEEEEEeeeCeEEEEEEeeeeeeccHHHHHHHHHHhhCCCCC
Q 016895 2 ETFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSD 81 (381)
Q Consensus 2 ~~~lfTSESV~~GHPDKicDqISDaILDa~L~~Dp~arVA~E~~v~~~~v~i~GEitt~a~vd~~~ivR~~i~~IGY~~~ 81 (381)
++||||||||++||||||||||||||||+||++||+|||||||++++|+|+|+|||++++++|+++|||++|++|||+++
T Consensus 1 ~~~lfTSESV~~GHPDKicDqISDailD~~l~~dp~arVA~E~~~~~~~v~i~GEi~~~~~vd~~~ivR~~i~~IGY~~~ 80 (100)
T PF00438_consen 1 KKYLFTSESVSEGHPDKICDQISDAILDACLKQDPNARVACETLVSTGMVIIAGEITSRAYVDIEKIVREVIKDIGYDDS 80 (100)
T ss_dssp -EEEEEEEEE-TTSHHHHHHHHHHHHHHHHHHH-TT-EEEEEEEEETTEEEEEEEEESSHHHTHHHHHHHHHHHHT-EEG
T ss_pred CceEEeeccccCCCchhhhceeeeccchHHHhcCCCCeEEEEEEeeccEEEEEEEeccchhhhHHHHHHHHHHHhCCCCc
Confidence 36999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCceEEEEeeccCCh
Q 016895 82 DVGLDADHCKVLVNIEQQSP 101 (381)
Q Consensus 82 ~~gfd~~~~~v~~~i~~QS~ 101 (381)
++|||+++|+|+++|++|||
T Consensus 81 ~~gfd~~tc~V~~~i~~QSp 100 (100)
T PF00438_consen 81 EYGFDYDTCEVLVAIHEQSP 100 (100)
T ss_dssp GGTEETTTSEEEEEEEEE-H
T ss_pred cCCCCCCcceEEEeecccCc
Confidence 99999999999999999998
No 11
>PRK04439 S-adenosylmethionine synthetase; Provisional
Probab=98.84 E-value=1.9e-07 Score=95.15 Aligned_cols=279 Identities=23% Similarity=0.299 Sum_probs=171.7
Q ss_pred CCCCCChhhhhhhHHHHHHHH----hhc---------CCCCcEEEEEEee--eC------eEEEEEEeeeee---eccHH
Q 016895 11 VNEGHPDKLCDQISDAVLDAC----LEQ---------DPESKVACETCTK--TN------MVMVFGEITTKA---KVDYE 66 (381)
Q Consensus 11 V~~GHPDKicDqISDaILDa~----L~~---------Dp~arVA~E~~v~--~~------~v~i~GEitt~a---~vd~~ 66 (381)
=+-||||-|||-|++++=-++ |++ |+---||-++.-+ .| .++++|..|+.. .+.++
T Consensus 25 KGiGHPDticD~iaE~~S~~Ls~~Yl~~fG~ILHHN~DK~llvgG~s~p~fGGG~vi~Pi~ii~~GRAt~~~~g~~iPv~ 104 (399)
T PRK04439 25 KGIGHPDTICDGIAEAVSRALSRYYLEKFGAILHHNTDKVLLVGGRSAPKFGGGEVIEPIYIILGGRATKEVGGEEIPVG 104 (399)
T ss_pred cCCCCChHHHHHHHHHHHHHHHHHHHHHhCCeeccccchheEEccEEeccCCCceEEeeEEEEEecceeeeECCeEecHH
Confidence 367999999999999875543 332 6766676665533 22 357899988764 48888
Q ss_pred HHHHHHHHhhCCCC-CCCCCCCCc-eEEEEeeccCChhhhccccCCCCCCCCCCCCCcccceeeeecCCCCCCCCcHHHH
Q 016895 67 KIVRDTCRSIGFVS-DDVGLDADH-CKVLVNIEQQSPDIAQGVHGHFTKRPEDIGAGDQGHMFGYATDETSEFMPLSHVL 144 (381)
Q Consensus 67 ~ivR~~i~~IGY~~-~~~gfd~~~-~~v~~~i~~QS~dIa~gV~~~~~~~~~~~GAGDQGimfGYA~~ET~~~MPl~i~l 144 (381)
+|+.++.++ |=. .--.+|.+. ..|...+.+-|+|+..-..+. ..-.+|-|-.+..|||-=.+
T Consensus 105 ~Ia~~Aak~--~L~~~l~~lD~e~hv~i~~~i~~GS~dL~~vF~r~----~~vp~ANDTS~gVGyAPlS~---------- 168 (399)
T PRK04439 105 EIAIEAAKE--YLRENLRNLDPERHVIIDVRLGPGSTDLVDVFERE----SIVPLANDTSFGVGYAPLSE---------- 168 (399)
T ss_pred HHHHHHHHH--HHHHhCccCCccccEEEEEeeCCCcHHHHHHhCCC----CCccccccccceeecCCCCH----------
Confidence 887655554 111 112355544 567778899999998655431 11348999999999984321
Q ss_pred HHHHHHHHHHHHHc----CCCCcccCCcceeEEEEEecCCCceeeeEEeEEEEe----eecCCCCC-hHHHHHHHHHhhc
Q 016895 145 ATKLGARLTEVRKN----STCSWLRPDGKTQVTVEYYNDNGAMVPVRVHTVLIS----TQHDETVT-NDEIAADLKEHVI 215 (381)
Q Consensus 145 Ah~L~~~l~~~Rk~----~~~~~l~pD~KtQVtv~Y~~~~g~~~p~rv~tivvS----~QH~~~v~-~~~l~~~i~e~Vi 215 (381)
-.+|+..+++.=.+ ..+|+.+.|-|.- -+++. . -+ ++.|. ..|-.+++ .-+.++.+++.|-
T Consensus 169 ~E~~Vl~~E~~lns~~~k~~~P~~GeDiKVM---G~R~g-~---~i---~lTVa~a~v~r~v~~~~~Y~~~k~~v~~~v~ 238 (399)
T PRK04439 169 TERLVLETERYLNSEEFKKRFPEVGEDIKVM---GLRNG-D---EI---TLTIAMALVDRYVNDVDEYFEVKEEVKEKVE 238 (399)
T ss_pred HHHHHHHHHHHhcCcchhhcCCCcCCCeEEE---EEEcC-C---EE---EEEEEhHHhhhhcCCHHHHHHHHHHHHHHHH
Confidence 22333344333321 4689999999974 23332 2 12 22222 13333332 2245555555544
Q ss_pred ccccCCCCCCCCcEEEECCCCCe-------EEcC---CCCCcccCCceEEEecC-CCccccccccccCCCC-Ccccchhh
Q 016895 216 KPVIPEKYLDEKTIFHLNPSGRF-------VIGG---PHGDAGLTGRKIIIDTY-GGWGAHGGGAFSGKDP-TKVDRSGA 283 (381)
Q Consensus 216 ~~v~~~~~~~~~t~~~INPtG~F-------viGG---P~~DtGLTGRKiiVDTY-Gg~~~HGGGAfSGKDp-tKVDRSaA 283 (381)
.-. .++.+.+..++||..-.- ++=| =+||.|.+||=.=|--- =++-|-+==|-+||.| +-|=.-=.
T Consensus 239 ~~a--~~~~~~~v~v~iNt~D~~~~~~~YLTVtGTSAE~GDdG~VGRGNRvNGLITp~RPMSmEAaAGKNPv~HVGKIYN 316 (399)
T PRK04439 239 DLA--QKYTDRDVEVHINTADDPDEGGVYLTVTGTSAEMGDDGSVGRGNRVNGLITPNRPMSMEAAAGKNPVNHVGKIYN 316 (399)
T ss_pred HHH--HhhCCCceEEEEeCCCCCCCCcEEEEeceeehhccCCcccCcCcccCcccCCCCCccccccCCCCCcccchHHHH
Confidence 322 334555778999986542 2223 26899999995432211 1222334457889998 45666667
Q ss_pred hHHHHHHHHHHHh-cccccceEEEEEeecCC--Cccc
Q 016895 284 YIVRQAAKSIVAN-GLARRCIVQVSYAIGVP--EPLS 317 (381)
Q Consensus 284 Y~AR~iAKniVaa-GlA~~ceVqlsYAIG~a--~Pvs 317 (381)
.+|..||+.|+++ .=.++|.|.|---||.| +|..
T Consensus 317 vlA~~iA~~i~~~v~gv~ev~V~llSqIG~PId~P~~ 353 (399)
T PRK04439 317 VLANRIAREIYEEVEGVKEVYVRLLSQIGKPIDEPLV 353 (399)
T ss_pred HHHHHHHHHHHHhcCCceEEEEEEeccCCCcCCCCeE
Confidence 8899999999984 22679999998889986 6743
No 12
>PF01941 AdoMet_Synthase: S-adenosylmethionine synthetase (AdoMet synthetase); InterPro: IPR002795 A highly diverged class of S-adenosylmethionine synthetases have been identified in the archaea. S-adenosylmethionine is the primary alkylating agent in all known organisms. ATP:L-methionine S-adenosyltransferase (MAT) catalyses the only known biosynthetic route to this central metabolite. Although the amino acid sequence of MAT is strongly conserved among bacteria and eukarya (see IPR002133 from INTERPRO) no homologues had been recognised in the completed genome sequences of any archaea. The identification of a second major class of MAT emphasises the long evolutionary history of the archaeal lineage and the structural diversity found even in crucial metabolic enzymes []. Three bacterial genomes encode both the archaeal and eukaryotic/bacterial types of MAT [].; GO: 0004478 methionine adenosyltransferase activity, 0005524 ATP binding, 0006730 one-carbon metabolic process
Probab=98.77 E-value=4.1e-07 Score=92.69 Aligned_cols=283 Identities=22% Similarity=0.256 Sum_probs=173.3
Q ss_pred CCCCCChhhhhhhHHHHHHHHh----hc---------CCCCcEEEEEEeee--------CeEEEEEEeeeee---eccHH
Q 016895 11 VNEGHPDKLCDQISDAVLDACL----EQ---------DPESKVACETCTKT--------NMVMVFGEITTKA---KVDYE 66 (381)
Q Consensus 11 V~~GHPDKicDqISDaILDa~L----~~---------Dp~arVA~E~~v~~--------~~v~i~GEitt~a---~vd~~ 66 (381)
=+-||||-|||-||+++=-++- ++ |+---||-++.-+- =.|+++|..|+.. .+.++
T Consensus 25 KGiGHPDtIcD~iaE~vS~~Ls~~Yl~~fG~ILHHN~DK~llvgG~s~p~fGGG~vi~Pi~ii~~GRAt~~~~~~~iPv~ 104 (396)
T PF01941_consen 25 KGIGHPDTICDGIAEAVSRALSRYYLERFGAILHHNTDKVLLVGGRSEPKFGGGEVIEPIYIILGGRATKEVGGEKIPVD 104 (396)
T ss_pred cCCCCChHHHHHHHHHHHHHHHHHHHHHhCCeeccccccceEEccEEeccCCCceeeeeEEEEEecceeeccCCeeccHH
Confidence 3679999999999998855432 22 66666666654432 2478899988764 68888
Q ss_pred HHHHHHHHhhCCCC-CCCCCCCC-ceEEEEeeccCChhhhccccCCCCCCCCCCCCCcccceeeeecCCCCCCCCcHHHH
Q 016895 67 KIVRDTCRSIGFVS-DDVGLDAD-HCKVLVNIEQQSPDIAQGVHGHFTKRPEDIGAGDQGHMFGYATDETSEFMPLSHVL 144 (381)
Q Consensus 67 ~ivR~~i~~IGY~~-~~~gfd~~-~~~v~~~i~~QS~dIa~gV~~~~~~~~~~~GAGDQGimfGYA~~ET~~~MPl~i~l 144 (381)
+|+.++.++ |=. .--.+|.+ ...|...+.+-|+|+..-..+.. .-.+|-|-.+..|||-=. -
T Consensus 105 ~Ia~~aak~--~l~~~l~~lD~e~hv~i~~~i~~GS~dL~dvf~r~~----~vp~ANDTS~gVGyAPlS----------~ 168 (396)
T PF01941_consen 105 EIAIEAAKE--WLRENLRFLDPERHVIIDCRIGPGSPDLVDVFERGK----KVPLANDTSFGVGYAPLS----------E 168 (396)
T ss_pred HHHHHHHHH--HHHHhcccCCccccEEEEEeeCCCChHHHHHhcccc----cccccCCccceeccCCcc----------H
Confidence 887666555 211 12235655 36778889999999987766421 135899999999998432 2
Q ss_pred HHHHHHHHHHHHHc----CCCCcccCCcceeEEEEEecCCCceeeeEEeEEEEeeecCCCCC-hHHHHHHHHHhhccccc
Q 016895 145 ATKLGARLTEVRKN----STCSWLRPDGKTQVTVEYYNDNGAMVPVRVHTVLISTQHDETVT-NDEIAADLKEHVIKPVI 219 (381)
Q Consensus 145 Ah~L~~~l~~~Rk~----~~~~~l~pD~KtQVtv~Y~~~~g~~~p~rv~tivvS~QH~~~v~-~~~l~~~i~e~Vi~~v~ 219 (381)
.-+|+..+++.=.+ ..+|+.+.|-|.-- +++. ..+. +.|..-.|+ .|-.+.+ .-+.++.+++.+- ..+
T Consensus 169 ~E~~Vl~~Er~lns~~fk~~~p~~GeDiKVMG---~R~g-~~i~-LTvA~a~v~-r~v~~~~~Y~~~k~~v~~~v~-~~a 241 (396)
T PF01941_consen 169 TEKLVLETERYLNSPEFKKKFPEVGEDIKVMG---LREG-DKIT-LTVAMAFVD-RYVSSLDEYFERKEEVKEEVE-DYA 241 (396)
T ss_pred HHHHHHHHHHHhccccccccCCCcCCCeEEEE---EEeC-CEEE-EEEEhhhhh-hhcCCHHHHHHHHHHHHHHHH-HHH
Confidence 23333344333222 45899999999853 3332 2110 111111111 2222222 1244455555443 233
Q ss_pred CCCCCCCCcEEEECCCCCeEEcC----------CCCCcccCCceEEEecC-CCccccccccccCCCC-CcccchhhhHHH
Q 016895 220 PEKYLDEKTIFHLNPSGRFVIGG----------PHGDAGLTGRKIIIDTY-GGWGAHGGGAFSGKDP-TKVDRSGAYIVR 287 (381)
Q Consensus 220 ~~~~~~~~t~~~INPtG~FviGG----------P~~DtGLTGRKiiVDTY-Gg~~~HGGGAfSGKDp-tKVDRSaAY~AR 287 (381)
.. +.+.+..++||..-.--.|| =+||.|.+||=.=|--- =++-|-+==|-+||.| +-|=.-=..+|.
T Consensus 242 ~~-~~~~~v~v~iNt~D~~~~~~~YLTvtGTSAE~GDdG~VGRGNRvNGLITp~RPMSmEAaAGKNPv~HVGKIYNvlA~ 320 (396)
T PF01941_consen 242 AK-YTDRDVEVHINTADDPEEGGVYLTVTGTSAEMGDDGSVGRGNRVNGLITPNRPMSMEAAAGKNPVNHVGKIYNVLAN 320 (396)
T ss_pred HH-hcCCceEEEEECCCCCCCCcEEEEeceeeccccCCcccCcccccccccCCCCCCcccccCCCCCcchhhHHHHHHHH
Confidence 32 23566788999876322233 26899999995433211 1233445568899998 456666788999
Q ss_pred HHHHHHHHh-cccccceEEEEEeecCC--Cccc
Q 016895 288 QAAKSIVAN-GLARRCIVQVSYAIGVP--EPLS 317 (381)
Q Consensus 288 ~iAKniVaa-GlA~~ceVqlsYAIG~a--~Pvs 317 (381)
.||+.|++. .=.++|.|.|---||.| +|..
T Consensus 321 ~iA~~I~~~v~gv~ev~V~llSqIG~PId~P~~ 353 (396)
T PF01941_consen 321 EIAQRIYEEVDGVEEVYVRLLSQIGKPIDEPQI 353 (396)
T ss_pred HHHHHHHHhcCCcceEEEEEccccCCCCCCCeE
Confidence 999999984 23568999988889975 5643
No 13
>COG1812 MetK Archaeal S-adenosylmethionine synthetase [Amino acid transport and metabolism]
Probab=97.74 E-value=0.0007 Score=68.81 Aligned_cols=280 Identities=21% Similarity=0.247 Sum_probs=158.8
Q ss_pred cCCCCCChhhhhhhHHHHHHHHhhc-------------CCCCcEEEEE--------EeeeCeEEEEEEeeee---eeccH
Q 016895 10 SVNEGHPDKLCDQISDAVLDACLEQ-------------DPESKVACET--------CTKTNMVMVFGEITTK---AKVDY 65 (381)
Q Consensus 10 SV~~GHPDKicDqISDaILDa~L~~-------------Dp~arVA~E~--------~v~~~~v~i~GEitt~---a~vd~ 65 (381)
-=+-||||-|||-||.+|=-++-+. |.---|+-+. ++..=.|++.|.-|.. ..+++
T Consensus 24 RKGlGHPDsiaDgiAE~vsr~Ls~~YlerfG~IlHHN~Dk~~ivgG~s~p~FGGGevi~PIyIll~GRAt~~~~g~~ip~ 103 (400)
T COG1812 24 RKGLGHPDSIADGIAEAVSRALSKYYLERFGVILHHNTDKVQIVGGQSAPKFGGGEVIEPIYILLSGRATKEVEGVEIPV 103 (400)
T ss_pred ecCCCCChhHHHHHHHHHHHHHHHHHHHHhCceeccccceeEEEcccccccCCCcceeeeEEEEEecceeeeecCeeccc
Confidence 3467999999999998886553322 2222222221 1222236777776643 34666
Q ss_pred HHHHHHHHHhhCCCC-CCCCCCCCce-EEEEeeccCChhhhccccCCCCCCCCCCCCCcccceeeeecC-CCCCCCCcHH
Q 016895 66 EKIVRDTCRSIGFVS-DDVGLDADHC-KVLVNIEQQSPDIAQGVHGHFTKRPEDIGAGDQGHMFGYATD-ETSEFMPLSH 142 (381)
Q Consensus 66 ~~ivR~~i~~IGY~~-~~~gfd~~~~-~v~~~i~~QS~dIa~gV~~~~~~~~~~~GAGDQGimfGYA~~-ET~~~MPl~i 142 (381)
..|+-++-++ |=. .---+|.+++ .+...|.+-|.|+..--.+.. .+-..|-|-..+.|||-= ||+
T Consensus 104 ~~ia~~AAk~--yLr~~~r~LD~E~~Viid~rig~GS~dL~dvf~~~~---~~VplANDTSfgVG~APLs~tE------- 171 (400)
T COG1812 104 GSIAIKAAKE--YLRENLRNLDVENHVIIDVRIGQGSVDLVDVFERAK---EEVPLANDTSFGVGFAPLSETE------- 171 (400)
T ss_pred hHHHHHHHHH--HHHhhcccCCccccEEEEeeccCCchhHHHHHhhcc---cCCcccccccceeccCCCcHHH-------
Confidence 6665444433 111 1123566654 556678899999876554321 123589999999999842 233
Q ss_pred HHHHHHHHHHHHH----HHcCCCCcccCCcceeEEEEEecCCCceeeeEEeEEEEeeecCCCCC-hHHHHHHHHHhhccc
Q 016895 143 VLATKLGARLTEV----RKNSTCSWLRPDGKTQVTVEYYNDNGAMVPVRVHTVLISTQHDETVT-NDEIAADLKEHVIKP 217 (381)
Q Consensus 143 ~lAh~L~~~l~~~----Rk~~~~~~l~pD~KtQVtv~Y~~~~g~~~p~rv~tivvS~QH~~~v~-~~~l~~~i~e~Vi~~ 217 (381)
||+...+.+ --...+|..+.|-|.-. ++ +++. .-.+|.+-+||-. -++++ .-+++++++++|-+-
T Consensus 172 ----rlV~etEr~lns~~~k~~~P~vGeDIKVMg-lR--~~~~--i~LTIa~a~V~~~-v~~~~~Y~~~ke~v~~~Vedl 241 (400)
T COG1812 172 ----RLVLETERYLNSPEFKKKLPAVGEDIKVMG-LR--EGDE--ISLTIAAALVDKY-VEDIDEYIEVKEEVRKHVEDL 241 (400)
T ss_pred ----HHHHHHHHHhcChhhcccCCCcCCceEEEE-Ee--cCCe--EEEEEehHHHHHh-hcCHHHHHHHHHHHHHHHHHH
Confidence 333333322 22357899999999853 33 2211 2345555555533 34333 124455555554432
Q ss_pred ccCCCCCCCCcEEEECCCCCeEEc-------C---CCCCcccCCceEEEecC-CCccccccccccCCCCC-cccchhhhH
Q 016895 218 VIPEKYLDEKTIFHLNPSGRFVIG-------G---PHGDAGLTGRKIIIDTY-GGWGAHGGGAFSGKDPT-KVDRSGAYI 285 (381)
Q Consensus 218 v~~~~~~~~~t~~~INPtG~FviG-------G---P~~DtGLTGRKiiVDTY-Gg~~~HGGGAfSGKDpt-KVDRSaAY~ 285 (381)
..+.-+.+.+.+||-.-...-| | -+||.|.+||=.=|--- =++-|-.==|-+||.|. -|=.-=..+
T Consensus 242 --A~~it~~~v~v~iNtaD~~e~~~~YlTvTGTSaE~GDdGsVGRGNR~nGLITp~RpmSmEAaaGKNPvnHVGKiYN~L 319 (400)
T COG1812 242 --ASEITDREVEVYINTADDPERGSVYLTVTGTSAEQGDDGSVGRGNRVNGLITPNRPMSMEAAAGKNPVNHVGKIYNVL 319 (400)
T ss_pred --HhhhhccceEEEEecccccccCeEEEEeccchhhhCCCcccccccccccccCCCCCcccccccCCCchhhhHHHHHHH
Confidence 1222234456677765443222 2 47899999995432211 12233445688999985 355555667
Q ss_pred HHHHHHHHHHhc-ccccceEEEEEeecCC
Q 016895 286 VRQAAKSIVANG-LARRCIVQVSYAIGVP 313 (381)
Q Consensus 286 AR~iAKniVaaG-lA~~ceVqlsYAIG~a 313 (381)
|-.||+.|+.+= =.++|.|+|-=-||.|
T Consensus 320 a~~iA~~I~~ev~~v~evyv~ilsqIGkP 348 (400)
T COG1812 320 ANQIANEIVEEVPGVEEVYVRILSQIGKP 348 (400)
T ss_pred HHHHHHHHHHhcCCcceEEEehhhhcCCc
Confidence 888888888653 2678888887778865
No 14
>PRK11023 outer membrane lipoprotein; Provisional
Probab=50.71 E-value=26 Score=32.54 Aligned_cols=43 Identities=21% Similarity=0.251 Sum_probs=33.5
Q ss_pred hhhhhh-hHHHHHHHHhhcCCCCcEEEEEEeeeCeEEEEEEeee
Q 016895 17 DKLCDQ-ISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITT 59 (381)
Q Consensus 17 DKicDq-ISDaILDa~L~~Dp~arVA~E~~v~~~~v~i~GEitt 59 (381)
+...|. |+..|-.+++..+.-.-..++|-+.+|.|++.|+++.
T Consensus 121 ~~~~D~~It~kik~~L~~~~~v~~~~I~V~t~~G~V~L~G~v~~ 164 (191)
T PRK11023 121 TASKDTWITTKVRSQLLTSDSVKSSNVKVTTENGEVFLLGLVTQ 164 (191)
T ss_pred cccCcHHHHHHHHHHHhcCCCCCcceEEEEEECcEEEEEEEeCH
Confidence 445554 7778888888877666667888888999999999853
No 15
>TIGR00590 pcna proliferating cell nuclear antigen (pcna). All proteins in this family for which functions are known form sliding DNA clamps that are used in DNA replication processes. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=50.25 E-value=81 Score=30.59 Aligned_cols=35 Identities=17% Similarity=0.171 Sum_probs=27.2
Q ss_pred hhhhHHHHHHHHHHHhcccccceEEEEEeecCCCcccHH
Q 016895 281 SGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVF 319 (381)
Q Consensus 281 SaAY~AR~iAKniVaaGlA~~ceVqlsYAIG~a~Pvsi~ 319 (381)
++.|..||+-+-.-|+++++++++. +|...|+.+.
T Consensus 204 ~~~y~l~YL~~~~Ka~~ls~~V~l~----~~~~~Pl~l~ 238 (259)
T TIGR00590 204 TLTFAIKYLNLFTKATPLSDRVTLS----MSNDVPLVVE 238 (259)
T ss_pred eeeeeHHHHHHhhhhccCCCeEEEE----EcCCCCEEEE
Confidence 4789999998777788999987664 5677777543
No 16
>PF14084 DUF4264: Protein of unknown function (DUF4264)
Probab=48.67 E-value=4.7 Score=31.05 Aligned_cols=39 Identities=26% Similarity=0.314 Sum_probs=26.9
Q ss_pred cCChhhhccccCCCCCCCCCCCCCcccceeeeecCCCCCCCCcHH
Q 016895 98 QQSPDIAQGVHGHFTKRPEDIGAGDQGHMFGYATDETSEFMPLSH 142 (381)
Q Consensus 98 ~QS~dIa~gV~~~~~~~~~~~GAGDQGimfGYA~~ET~~~MPl~i 142 (381)
+.++|+-.-||. .+ ----|+++|||.+-|+-++=|-++|
T Consensus 11 ~~~~dlYKvVDf-LN-----ktLK~~~lmFGLs~d~~~~k~vitI 49 (52)
T PF14084_consen 11 EYNDDLYKVVDF-LN-----KTLKDKNLMFGLSKDEKEEKMVITI 49 (52)
T ss_pred cCCccHHHHHHH-Hh-----hhhhhccEEEEEeecCcCCEEEEEE
Confidence 456777777773 11 1244899999999988777675544
No 17
>PF02980 FokI_C: Restriction endonuclease FokI, catalytic domain; InterPro: IPR004233 There are four classes of restriction endonucleases: types I, II,III and IV. All types of enzymes recognise specific short DNA sequences and carry out the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. They differ in their recognition sequence, subunit composition, cleavage position, and cofactor requirements [, ], as summarised below: Type I enzymes (3.1.21.3 from EC) cleave at sites remote from recognition site; require both ATP and S-adenosyl-L-methionine to function; multifunctional protein with both restriction and methylase (2.1.1.72 from EC) activities. Type II enzymes (3.1.21.4 from EC) cleave within or at short specific distances from recognition site; most require magnesium; single function (restriction) enzymes independent of methylase. Type III enzymes (3.1.21.5 from EC) cleave at sites a short distance from recognition site; require ATP (but doesn't hydrolyse it); S-adenosyl-L-methionine stimulates reaction but is not required; exists as part of a complex with a modification methylase methylase (2.1.1.72 from EC). Type IV enzymes target methylated DNA. Type II restriction endonucleases (3.1.21.4 from EC) are components of prokaryotic DNA restriction-modification mechanisms that protect the organism against invading foreign DNA. These site-specific deoxyribonucleases catalyse the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. Of the 3000 restriction endonucleases that have been characterised, most are homodimeric or tetrameric enzymes that cleave target DNA at sequence-specific sites close to the recognition site. For homodimeric enzymes, the recognition site is usually a palindromic sequence 4-8 bp in length. Most enzymes require magnesium ions as a cofactor for catalysis. Although they can vary in their mode of recognition, many restriction endonucleases share a similar structural core comprising four beta-strands and one alpha-helix, as well as a similar mechanism of cleavage, suggesting a common ancestral origin []. However, there is still considerable diversity amongst restriction endonucleases [, ]. The target site recognition process triggers large conformational changes of the enzyme and the target DNA, leading to the activation of the catalytic centres. Like other DNA binding proteins, restriction enzymes are capable of non-specific DNA binding as well, which is the prerequisite for efficient target site location by facilitated diffusion. Non-specific binding usually does not involve interactions with the bases but only with the DNA backbone []. Thie entry represents the type IIS restriction endonuclease FokI (3.1.21.4 from EC), which is a member of an unusual class of bipartite restriction enzymes that recognise a specific DNA sequence and cleave DNA nonspecifically a short distance away from that sequence []. FokI contains amino- and carboxy-terminal domains corresponding to the DNA-recognition (IPR004234 from INTERPRO) and cleavage functions, respectively. The catalytic domain contains only a single catalytic centre, raising the question of how monomeric FokI manages to cleave both DNA strands. The catalytic domain is sequestered in a 'piggyback' fashion by the recognition domain [].; GO: 0003677 DNA binding, 0009036 Type II site-specific deoxyribonuclease activity, 0009307 DNA restriction-modification system; PDB: 1FOK_A 2FOK_B.
Probab=47.04 E-value=18 Score=33.01 Aligned_cols=37 Identities=16% Similarity=0.144 Sum_probs=27.0
Q ss_pred ccchhhhHHHHHHHHHHHhcccccceEEEEEeecCCC
Q 016895 278 VDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPE 314 (381)
Q Consensus 278 VDRSaAY~AR~iAKniVaaGlA~~ceVqlsYAIG~a~ 314 (381)
++=++==||||||.-++..||+.+-...+.+-+|..+
T Consensus 77 ~EgTSDKYaR~I~~wL~k~glv~~~~k~vt~~~~~~~ 113 (142)
T PF02980_consen 77 WEGTSDKYARMICGWLKKVGLVEQKTKKVTRTIGGRK 113 (142)
T ss_dssp ---HHHHHHHHHHHHHHHTTSEEE--EEEE-BTTBTT
T ss_pred cccchHHHHHHHHHHHHHhchheecceEEEeeccCcc
Confidence 3556777899999999999999999999888777654
No 18
>PRK11198 LysM domain/BON superfamily protein; Provisional
Probab=46.69 E-value=35 Score=30.47 Aligned_cols=40 Identities=13% Similarity=0.141 Sum_probs=33.2
Q ss_pred hhhhHHHHHHHHhhcCCCCcEEEEEEeeeCeEEEEEEeeee
Q 016895 20 CDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTK 60 (381)
Q Consensus 20 cDqISDaILDa~L~~Dp~arVA~E~~v~~~~v~i~GEitt~ 60 (381)
..+|+|+|+.++-++...+.- +.|-+.+|.|.+.|.+.+.
T Consensus 24 ~~~~~~~i~~~i~~~~~~~~~-i~V~v~~G~v~l~G~v~s~ 63 (147)
T PRK11198 24 NEDAADALKEHISKQGLGDAD-VNVQVEDGKATVSGDAASQ 63 (147)
T ss_pred hHHHHHHHHHHHHhcCCCcCC-ceEEEeCCEEEEEEEeCCH
Confidence 489999999998888765554 6788899999999988774
No 19
>PF00352 TBP: Transcription factor TFIID (or TATA-binding protein, TBP); InterPro: IPR000814 The TATA-box binding protein (TBP) is required for the initiation of transcription by RNA polymerases I, II and III, from promoters with or without a TATA box [, ]. TBP associates with a host of factors, including the general transcription factors TFIIA, -B, -D, -E, and -H, to form huge multi-subunit pre-initiation complexes on the core promoter. Through its association with different transcription factors, TBP can initiate transcription from different RNA polymerases. There are several related TBPs, including TBP-like (TBPL) proteins []. The C-terminal core of TBP (~180 residues) is highly conserved and contains two 77-amino acid repeats that produce a saddle-shaped structure that straddles the DNA; this region binds to the TATA box and interacts with transcription factors and regulatory proteins []. By contrast, the N-terminal region varies in both length and sequence.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0006367 transcription initiation from RNA polymerase II promoter; PDB: 1D3U_A 1PCZ_B 1AIS_A 1NGM_A 1TBP_A 1TBA_B 1YTB_A 1RM1_A 1YTF_A 1NH2_A ....
Probab=46.00 E-value=23 Score=28.64 Aligned_cols=57 Identities=21% Similarity=0.366 Sum_probs=40.2
Q ss_pred eEEeEEEEeeecCCCCChHHHHHHHHHhhcccc-cCC---CCCCCCcEEEECCCCCeEEcC
Q 016895 186 VRVHTVLISTQHDETVTNDEIAADLKEHVIKPV-IPE---KYLDEKTIFHLNPSGRFVIGG 242 (381)
Q Consensus 186 ~rv~tivvS~QH~~~v~~~~l~~~i~e~Vi~~v-~~~---~~~~~~t~~~INPtG~FviGG 242 (381)
.+|.+||-|..=.-++++++|...+.+---+|- +|. .+-++++.++|=+||++++-|
T Consensus 4 ~~i~NIva~~~l~~~idL~~la~~~~~~~YePe~fpgl~~r~~~p~~t~~IF~sGki~itG 64 (86)
T PF00352_consen 4 FKIVNIVASFDLPFEIDLEELAEELENVEYEPERFPGLIYRLRNPKATVLIFSSGKIVITG 64 (86)
T ss_dssp EEEEEEEEEEE-SSEB-HHHHHHHSTTEEEETTTESSEEEEETTTTEEEEEETTSEEEEEE
T ss_pred cEEEEEEEEEECCCccCHHHHHhhccCcEEeeccCCeEEEeecCCcEEEEEEcCCEEEEEe
Confidence 689999999998899999999887733333332 222 123467889999999999766
No 20
>cd04518 TBP_archaea archaeal TATA box binding protein (TBP): TBPs are transcription factors present in archaea and eukaryotes, that recognize promoters and initiate transcription. TBP has been shown to be an essential component of three different transcription initiation complexes: SL1, TFIID and TFIIIB, directing transcription by RNA polymerases I, II and III, respectively. TBP binds directly to the TATA box promoter element, where it nucleates polymerase assembly, thus defining the transcription start site. TBP's binding in the minor groove induces a dramatic DNA bending while its own structure barely changes. The conserved core domain of TBP, which binds to the TATA box, has a bipartite structure, with intramolecular symmetry generating a saddle-shaped structure that sits astride the DNA.
Probab=44.59 E-value=65 Score=29.94 Aligned_cols=82 Identities=20% Similarity=0.300 Sum_probs=61.4
Q ss_pred eEEeEEEEeeecCCCCChHHHHHHHHHhhcccc-cCC---CCCCCCcEEEECCCCCeEEcCCCCCcccCCceEEEecCCC
Q 016895 186 VRVHTVLISTQHDETVTNDEIAADLKEHVIKPV-IPE---KYLDEKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGG 261 (381)
Q Consensus 186 ~rv~tivvS~QH~~~v~~~~l~~~i~e~Vi~~v-~~~---~~~~~~t~~~INPtG~FviGGP~~DtGLTGRKiiVDTYGg 261 (381)
++|++||-|++=...+++++|...+.+---.|. +|. .+-++....+|=.||++++=|
T Consensus 2 ~~I~NvVas~~l~~~ldL~~la~~~~n~eY~P~~fpgli~Rl~~Pk~t~lIF~SGKiv~tG------------------- 62 (174)
T cd04518 2 LKIENIVASVDLGQELDLEKVAAELPNAEYNPDQFPGLVYRLEDPKIAALIFRSGKMVCTG------------------- 62 (174)
T ss_pred cEEEEEEEEEEcCCeecHHHHHhhCCCcEECCCcCcEEEEEccCCcEEEEEECCCeEEEEc-------------------
Confidence 478999999999999999999877655444442 232 223467889999999999755
Q ss_pred ccccccccccCCCCCcccchhhhHHHHHHHHHHHhcccc
Q 016895 262 WGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVANGLAR 300 (381)
Q Consensus 262 ~~~HGGGAfSGKDptKVDRSaAY~AR~iAKniVaaGlA~ 300 (381)
.|--..+..+++.++|-|-..|...
T Consensus 63 --------------aks~~~a~~a~~~~~~~L~~~g~~~ 87 (174)
T cd04518 63 --------------AKSVEDLHRAVKEIIKKLKDYGIKV 87 (174)
T ss_pred --------------cCCHHHHHHHHHHHHHHHHhcCCCc
Confidence 4555677778899999998888553
No 21
>PRK00394 transcription factor; Reviewed
Probab=41.50 E-value=87 Score=29.19 Aligned_cols=82 Identities=21% Similarity=0.288 Sum_probs=58.5
Q ss_pred eEEeEEEEeeecCCCCChHHHHHHHHHhhcccc-cCC---CCCCCCcEEEECCCCCeEEcCCCCCcccCCceEEEecCCC
Q 016895 186 VRVHTVLISTQHDETVTNDEIAADLKEHVIKPV-IPE---KYLDEKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGG 261 (381)
Q Consensus 186 ~rv~tivvS~QH~~~v~~~~l~~~i~e~Vi~~v-~~~---~~~~~~t~~~INPtG~FviGGP~~DtGLTGRKiiVDTYGg 261 (381)
++|.+||-|++=...+++++|...+..---+|- +|. .+-+++..++|=.||++++=|
T Consensus 1 i~i~NvVas~~l~~~ldL~~la~~~~n~eYePe~fpgli~Rl~~Pk~t~lIf~sGKiv~tG------------------- 61 (179)
T PRK00394 1 IKIENIVASTDLGQELDLEKVAEDLPNAEYNPEQFPGLVYRLEDPKIAALIFRSGKVVCTG------------------- 61 (179)
T ss_pred CEEEEEEEEEEcCCCcCHHHHHhhCCCceeCcccCceEEEEecCCceEEEEEcCCcEEEEc-------------------
Confidence 368899999999999999999876654433332 232 123467889999999999754
Q ss_pred ccccccccccCCCCCcccchhhhHHHHHHHHHHHhcccc
Q 016895 262 WGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVANGLAR 300 (381)
Q Consensus 262 ~~~HGGGAfSGKDptKVDRSaAY~AR~iAKniVaaGlA~ 300 (381)
.|--..+.-+++.+++.+-..|.-.
T Consensus 62 --------------a~S~~~a~~a~~~~~~~l~~~g~~~ 86 (179)
T PRK00394 62 --------------AKSVEDLHEAVKIIIKKLKELGIKV 86 (179)
T ss_pred --------------cCCHHHHHHHHHHHHHHHHHcCCCc
Confidence 2333466777888888888888544
No 22
>COG2441 Predicted butyrate kinase [Energy production and conversion]
Probab=36.29 E-value=28 Score=35.63 Aligned_cols=66 Identities=35% Similarity=0.544 Sum_probs=41.9
Q ss_pred EEecCCCcc----ccccccccCCCCCcccchhhhHHHH----HHHHHHHhcccccceEEEEEeecCCCcccHH-------
Q 016895 255 IIDTYGGWG----AHGGGAFSGKDPTKVDRSGAYIVRQ----AAKSIVANGLARRCIVQVSYAIGVPEPLSVF------- 319 (381)
Q Consensus 255 iVDTYGg~~----~HGGGAfSGKDptKVDRSaAY~AR~----iAKniVaaGlA~~ceVqlsYAIG~a~Pvsi~------- 319 (381)
|||.|||-+ --||||. |--.||+--. .-|.++-.| --+|--|+.-|.++.
T Consensus 185 IVDGmgGttgf~gylg~g~M--------D~ElAYaLa~~~~~fsK~~lf~g-------Ga~~i~gv~sp~ef~~~ake~e 249 (374)
T COG2441 185 IVDGMGGTTGFTGYLGGGAM--------DGELAYALANYLERFSKSLLFEG-------GAAYIAGVDSPEEFVKLAKEDE 249 (374)
T ss_pred EEeccCCccCcccccccccc--------cHHHHHHHHHhhhhccHhheecc-------cccccccCCCHHHHHHHhhccc
Confidence 788888843 5567776 4467887553 346666443 346888999998877
Q ss_pred -------HHHHHHHHhcCCCchh
Q 016895 320 -------EILKIVKESFDFRPGM 335 (381)
Q Consensus 320 -------~i~~~i~~~Fdl~p~~ 335 (381)
-++-+++.+|.|-|..
T Consensus 250 nle~~~~l~e~vvK~v~tllps~ 272 (374)
T COG2441 250 NLETYNALIEGVVKDVFTLLPST 272 (374)
T ss_pred chHHHHHHHHHHHHHHHHhcccc
Confidence 2333666666555543
No 23
>PF04208 MtrA: Tetrahydromethanopterin S-methyltransferase, subunit A ; InterPro: IPR013340 This domain is mostly found in N5-methyltetrahydromethanopterin: coenzyme M methyltransferase subunit A (MtrA) in methanogenic archaea. This methyltranferase is a membrane-associated enzyme complex that uses methyl-transfer reaction to drive sodium-ion pump. 5-methyl-5,6,7,8-tetrahydromethanopterin + 2-mercaptoethanesulphonate = 5,6,7,8-tetrahydromethanopterin + 2-(methylthio)ethanesulphonate. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase (encoded by subunit A) is involved in the transfer of 'methyl' group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of methyl-coenzyme M by another enzyme, methyl-coenzyme M reductase. In some organisms this domain is found at the N-terminal region of what appears to be a fusion of the MtrA and MtrF proteins [, ]. The function of these proteins is unknown, though it is likely that they are involved in C1 metabolism. ; GO: 0008168 methyltransferase activity, 0030269 tetrahydromethanopterin S-methyltransferase activity
Probab=32.22 E-value=54 Score=31.04 Aligned_cols=41 Identities=27% Similarity=0.359 Sum_probs=32.7
Q ss_pred cCCCCcEEEEEEeeeCe-------EEEEEEeeeeeeccHHHHHHHHHHh
Q 016895 34 QDPESKVACETCTKTNM-------VMVFGEITTKAKVDYEKIVRDTCRS 75 (381)
Q Consensus 34 ~Dp~arVA~E~~v~~~~-------v~i~GEitt~a~vd~~~ivR~~i~~ 75 (381)
-||.|+||+=||.++.. .-|+|-..|. ++=+++++++++.+
T Consensus 18 Gdp~S~VAV~TL~S~~~~~~l~~gaAI~G~~~TE-NlGIEKvI~NvisN 65 (176)
T PF04208_consen 18 GDPESPVAVCTLGSHLLQAPLDAGAAIAGPCKTE-NLGIEKVIANVISN 65 (176)
T ss_pred CCCCCCEEEEECccccchhhhhcCceeeeccccc-ccCHHHHHHHHhcC
Confidence 59999999999998665 4566765554 78899999999765
No 24
>KOG3447 consensus Mitochondrial/chloroplast ribosomal S17-like protein [Translation, ribosomal structure and biogenesis]
Probab=31.97 E-value=16 Score=33.28 Aligned_cols=12 Identities=50% Similarity=0.584 Sum_probs=11.1
Q ss_pred cCCceEEEecCC
Q 016895 249 LTGRKIIIDTYG 260 (381)
Q Consensus 249 LTGRKiiVDTYG 260 (381)
+||||+.+|||-
T Consensus 95 vTGkk~~~~ty~ 106 (150)
T KOG3447|consen 95 VTGKKCAGDTYL 106 (150)
T ss_pred CcCccccCcchh
Confidence 799999999995
No 25
>cd04517 TLF TBP-like factors (TLF; also called TLP, TRF, TRP), which are found in most metazoans. TLFs and TBPs have well-conserved core domains; however, they only share about 60% similarity. TLFs, like TBPs, interact with TFIIA and TFIIB, which are part of the basal transcription machinery. Yet, in contrast to TBPs, TLFs seem not to interact with the TATA-box and even have a negative effect on the transcription of TATA-containing promoters. Recent results indicate that TLFs are involved in the transcription via TATA-less promoters.
Probab=30.91 E-value=72 Score=29.54 Aligned_cols=57 Identities=14% Similarity=0.216 Sum_probs=43.9
Q ss_pred eEEeEEEEeeecCCCCChHHHHHHHHHhhcccccCC---CCCCCCcEEEECCCCCeEEcC
Q 016895 186 VRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPE---KYLDEKTIFHLNPSGRFVIGG 242 (381)
Q Consensus 186 ~rv~tivvS~QH~~~v~~~~l~~~i~e~Vi~~v~~~---~~~~~~t~~~INPtG~FviGG 242 (381)
++|.+||-|.+=...++++++...+.+-.-+|.+|. .+-+.+...+|=.||++++=|
T Consensus 3 ~~i~Nvvas~~l~~~idL~~la~~l~n~eYeP~fpgli~R~~~Pk~t~lIF~sGKiviTG 62 (174)
T cd04517 3 ILIVNVVCQFSLRCHIDLRKLALAGRNVEYNPRYPKVTMRLREPRATASVWSSGKITITG 62 (174)
T ss_pred cEEEEEEEEEEcCCcccHHHHHhhCCCCEEeCCCCEEEEEecCCcEEEEEECCCeEEEEc
Confidence 578999999998889999999877766556664443 223467789999999999755
No 26
>COG2101 SPT15 TATA-box binding protein (TBP), component of TFIID and TFIIIB [Transcription]
Probab=30.87 E-value=63 Score=30.80 Aligned_cols=57 Identities=23% Similarity=0.369 Sum_probs=42.1
Q ss_pred eEEeEEEEeeecCCCCChHHHHHHHHHhhccc-ccCC---CCCCCCcEEEECCCCCeEEcC
Q 016895 186 VRVHTVLISTQHDETVTNDEIAADLKEHVIKP-VIPE---KYLDEKTIFHLNPSGRFVIGG 242 (381)
Q Consensus 186 ~rv~tivvS~QH~~~v~~~~l~~~i~e~Vi~~-v~~~---~~~~~~t~~~INPtG~FviGG 242 (381)
++|++||-|+.-..+++++++...+..---.| -+|. .+-+.++.++|=-||+.|+=|
T Consensus 8 i~IeNIVAS~~L~~elDL~~~~~~l~~aeYnP~qFpGlv~Rl~ePk~a~LIF~SGK~VcTG 68 (185)
T COG2101 8 ITIENIVASVDLGQELDLEEVALDLPGAEYNPEQFPGLVYRLEEPKTAALIFRSGKVVCTG 68 (185)
T ss_pred cEEEEEEEEechhhhccHHHHHhhCCCCccCHhHCCeeEEEecCCcceEEEEecCcEEEec
Confidence 78999999999999999998887665433333 2332 123477899999999999643
No 27
>PLN00062 TATA-box-binding protein; Provisional
Probab=29.69 E-value=1.5e+02 Score=27.69 Aligned_cols=104 Identities=17% Similarity=0.218 Sum_probs=66.5
Q ss_pred eEEeEEEEeeecCCCCChHHHHHHHHHhhcccc-cCC---CCCCCCcEEEECCCCCeEEcCCCCCcccCCceEEEecCCC
Q 016895 186 VRVHTVLISTQHDETVTNDEIAADLKEHVIKPV-IPE---KYLDEKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGG 261 (381)
Q Consensus 186 ~rv~tivvS~QH~~~v~~~~l~~~i~e~Vi~~v-~~~---~~~~~~t~~~INPtG~FviGGP~~DtGLTGRKiiVDTYGg 261 (381)
.+|.+||-|+.=.-.+++++|...+..---+|- +|. .+-+.+..++|=.||++++=|
T Consensus 2 ~~I~NvVas~~l~~~idL~~la~~~~n~eYePe~fpgli~Rl~~Pk~t~lIF~SGKiviTG------------------- 62 (179)
T PLN00062 2 PTLQNIVSTVNLDCKLDLKKIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVCTG------------------- 62 (179)
T ss_pred cEEEEEEEEEEcCCcccHHHHHhhCCCCEECCccCcEEEEEeCCCcEEEEEECCCeEEEEe-------------------
Confidence 468899999998889999999866554333332 332 223567789999999999755
Q ss_pred ccccccccccCCCCCcccchhhhHHHHHHHHHHHhcc---cccceEEEEEeec-CCCcccHHHHH
Q 016895 262 WGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVANGL---ARRCIVQVSYAIG-VPEPLSVFEIL 322 (381)
Q Consensus 262 ~~~HGGGAfSGKDptKVDRSaAY~AR~iAKniVaaGl---A~~ceVqlsYAIG-~a~Pvsi~~i~ 322 (381)
.|--..+..+++.++|-|-..|. .....||=-=|=. ..-|+.+..|.
T Consensus 63 --------------aks~e~a~~a~~~~~~~L~~lg~~~~~~~f~v~NIvas~~l~~~i~L~~la 113 (179)
T PLN00062 63 --------------AKSEHDSKLAARKYARIIQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLA 113 (179)
T ss_pred --------------cCCHHHHHHHHHHHHHHHHHcCCCcCCCccEEEEEEEEEECCCcccHHHHH
Confidence 23335666778888888877775 1244443222222 34566555443
No 28
>TIGR02889 spore_YpeB germination protein YpeB. Members of this family are YpeB, a protein usually encoded with the putative spore-cortex-lytic enzyme SleB and required, together with SleB, for normal germination. This family is retricted to endospore-forming species in the Firmicutes lineage of bacteria, and found in all such species to date except Clostridium perfringens. The matching phenotypes of mutants in SleB (called a lytic transglycosylase) and YpeB suggests that YpeB is necessary to allow SleB to function.
Probab=29.63 E-value=2.5e+02 Score=29.88 Aligned_cols=97 Identities=16% Similarity=0.211 Sum_probs=60.1
Q ss_pred CcEEEEEEeeeCeEE--EEEEeeeeeeccHH---HHHHHHHHhhCCCCCCCC--CCCCceEEEEeeccCChhhhccccCC
Q 016895 38 SKVACETCTKTNMVM--VFGEITTKAKVDYE---KIVRDTCRSIGFVSDDVG--LDADHCKVLVNIEQQSPDIAQGVHGH 110 (381)
Q Consensus 38 arVA~E~~v~~~~v~--i~GEitt~a~vd~~---~ivR~~i~~IGY~~~~~g--fd~~~~~v~~~i~~QS~dIa~gV~~~ 110 (381)
..+-|++-.++|.++ +-..-..+..+|.+ +++++.|+++||.+-..- -.++...+++.+..|. ||.--
T Consensus 262 ~~~~~~vsk~GG~~i~~l~~R~v~~~~is~~eA~~kA~~fL~~~G~~nm~~ty~~~~d~~~~~~yv~~~~-----gV~iY 336 (435)
T TIGR02889 262 ARIYMNVSKKGGHPLWFLDNRPVSKPKISLNEAVNKAKKFLEKIGFKDMEPTESDKYDNVGVISYVYVQN-----DVRVY 336 (435)
T ss_pred ceEEEEEEcCCCEEEEEEcCCCCCCCCcCHHHHHHHHHHHHHHcCcccceehhhhccCCEEEEEEEEeeC-----CEEEc
Confidence 457899999999876 33322234567776 579999999999764311 1223345555666553 33210
Q ss_pred CCCCCCCC-CCCcccceeee-----ecCCCCCCCCcH
Q 016895 111 FTKRPEDI-GAGDQGHMFGY-----ATDETSEFMPLS 141 (381)
Q Consensus 111 ~~~~~~~~-GAGDQGimfGY-----A~~ET~~~MPl~ 141 (381)
.+.-.+ -|-|.|=+.|| -+++++.=+|-|
T Consensus 337 --pd~IkVkVALDnGeIiGf~a~~Yl~~h~~R~ip~p 371 (435)
T TIGR02889 337 --PDQIKVKVALDDGDVVGFDARQYLTSHRKRTLPKP 371 (435)
T ss_pred --CCeEEEEEEccCCeEEEEecccchhhcccccCCCC
Confidence 011112 38899999999 778876556766
No 29
>cd04516 TBP_eukaryotes eukaryotic TATA box binding protein (TBP): Present in archaea and eukaryotes, TBPs are transcription factors that recognize promoters and initiate transcription. TBP has been shown to be an essential component of three different transcription initiation complexes: SL1, TFIID and TFIIIB, directing transcription by RNA polymerases I, II and III, respectively. TBP binds directly to the TATA box promoter element, where it nucleates polymerase assembly, thus defining the transcription start site. TBP's binding in the minor groove induces a dramatic DNA bending while its own structure barely changes. The conserved core domain of TBP, which binds to the TATA box, has a bipartite structure, with intramolecular symmetry generating a saddle-shaped structure that sits astride the DNA.
Probab=29.24 E-value=1.6e+02 Score=27.31 Aligned_cols=80 Identities=18% Similarity=0.265 Sum_probs=56.6
Q ss_pred eEEeEEEEeeecCCCCChHHHHHHHHHhhccc-ccCC---CCCCCCcEEEECCCCCeEEcCCCCCcccCCceEEEecCCC
Q 016895 186 VRVHTVLISTQHDETVTNDEIAADLKEHVIKP-VIPE---KYLDEKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGG 261 (381)
Q Consensus 186 ~rv~tivvS~QH~~~v~~~~l~~~i~e~Vi~~-v~~~---~~~~~~t~~~INPtG~FviGGP~~DtGLTGRKiiVDTYGg 261 (381)
.+|.+||-|+.=.-.+++++|...+..---+| .+|. .+-+.+...+|=.||++++=|
T Consensus 2 ~~I~NvVas~~l~~~idL~~la~~~~n~eYePe~fpgli~Rl~~Pk~t~lIF~SGKiviTG------------------- 62 (174)
T cd04516 2 PKIQNIVATVNLGCKLDLKKIALRARNAEYNPKRFAAVIMRIREPKTTALIFSSGKMVCTG------------------- 62 (174)
T ss_pred CEEEEEEEEEEcCCeecHHHHHhhCCCCEECCccCcEEEEEeCCCcEEEEEECCCeEEEEe-------------------
Confidence 46889999998888999999986665433333 2232 223467788999999999744
Q ss_pred ccccccccccCCCCCcccchhhhHHHHHHHHHHHhcc
Q 016895 262 WGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVANGL 298 (381)
Q Consensus 262 ~~~HGGGAfSGKDptKVDRSaAY~AR~iAKniVaaGl 298 (381)
.|--.++..+++.+++-|-..|.
T Consensus 63 --------------aks~e~a~~a~~~i~~~L~~~g~ 85 (174)
T cd04516 63 --------------AKSEDDSKLAARKYARIIQKLGF 85 (174)
T ss_pred --------------cCCHHHHHHHHHHHHHHHHHcCC
Confidence 23335666778899988877774
No 30
>cd04518 TBP_archaea archaeal TATA box binding protein (TBP): TBPs are transcription factors present in archaea and eukaryotes, that recognize promoters and initiate transcription. TBP has been shown to be an essential component of three different transcription initiation complexes: SL1, TFIID and TFIIIB, directing transcription by RNA polymerases I, II and III, respectively. TBP binds directly to the TATA box promoter element, where it nucleates polymerase assembly, thus defining the transcription start site. TBP's binding in the minor groove induces a dramatic DNA bending while its own structure barely changes. The conserved core domain of TBP, which binds to the TATA box, has a bipartite structure, with intramolecular symmetry generating a saddle-shaped structure that sits astride the DNA.
Probab=28.50 E-value=96 Score=28.83 Aligned_cols=58 Identities=28% Similarity=0.450 Sum_probs=41.8
Q ss_pred eeEEeEEEEeeecCCCCChHHHHHHHHHhhcccc-cCC---CCCCCCcEEEECCCCCeEEcC
Q 016895 185 PVRVHTVLISTQHDETVTNDEIAADLKEHVIKPV-IPE---KYLDEKTIFHLNPSGRFVIGG 242 (381)
Q Consensus 185 p~rv~tivvS~QH~~~v~~~~l~~~i~e~Vi~~v-~~~---~~~~~~t~~~INPtG~FviGG 242 (381)
.++|++||-|+.=.-.++++.+......-.-+|. +|. .+-+.+..++|=+||++++=|
T Consensus 92 ~~~i~NIVas~~l~~~i~L~~la~~~~~~~YePe~fpglvyR~~~pk~~~lIF~SGKvvitG 153 (174)
T cd04518 92 EIKVQNIVASADLGREVNLDAIAIGLPNAEYEPEQFPGLVYRLDEPKVVLLLFSSGKMVITG 153 (174)
T ss_pred ceEEEEEEEEEEcCCccCHHHHHhhCCCCccCcccCceEEEEecCCcEEEEEeCCCEEEEEe
Confidence 3788999999988889999999765553333332 232 223467899999999999755
No 31
>KOG0671 consensus LAMMER dual specificity kinases [Signal transduction mechanisms]
Probab=26.33 E-value=3.1 Score=43.57 Aligned_cols=79 Identities=27% Similarity=0.363 Sum_probs=61.0
Q ss_pred cCCceEEEecCCCccccccccccCCCCCcccchh-hhHHHHHHHHHHHhcccccceEEEEEeecCCCcccHHHHHHHHHH
Q 016895 249 LTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSG-AYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVFEILKIVKE 327 (381)
Q Consensus 249 LTGRKiiVDTYGg~~~HGGGAfSGKDptKVDRSa-AY~AR~iAKniVaaGlA~~ceVqlsYAIG~a~Pvsi~~i~~~i~~ 327 (381)
|++|+-||||.| -|.| ||-..=.||.. .|+|=.|-|||=+.-=|.+.|+++.--|....|-....+.+ +++
T Consensus 87 l~~Ry~i~~~lG------eGtF-GkV~ec~D~~~~~~vAlKIik~V~kYreAa~iEi~vLqki~~~DP~g~~rcv~-m~~ 158 (415)
T KOG0671|consen 87 LTNRYEIVDLLG------EGTF-GKVVECWDRETKEHVALKIIKNVDKYREAALIEIEVLQKINESDPNGKFRCVQ-MRD 158 (415)
T ss_pred cccceehhhhhc------CCcc-cceEEEeecCCCceehHHHHHHHHHHhhHHHHHHHHHHHHHhcCCCCceEEEe-eeh
Confidence 699999999997 3555 88888888865 99999999999999999999999888888888877663222 244
Q ss_pred hcCCCchh
Q 016895 328 SFDFRPGM 335 (381)
Q Consensus 328 ~Fdl~p~~ 335 (381)
.||++=..
T Consensus 159 wFdyrghi 166 (415)
T KOG0671|consen 159 WFDYRGHI 166 (415)
T ss_pred hhhccCce
Confidence 55555443
No 32
>cd00652 TBP_TLF TATA box binding protein (TBP): Present in archaea and eukaryotes, TBPs are transcription factors that recognize promoters and initiate transcription. TBP has been shown to be an essential component of three different transcription initiation complexes: SL1, TFIID and TFIIIB, directing transcription by RNA polymerases I, II and III, respectively. TBP binds directly to the TATA box promoter element, where it nucleates polymerase assembly, thus defining the transcription start site. TBP's binding in the minor groove induces a dramatic DNA bending while its own structure barely changes. The conserved core domain of TBP, which binds to the TATA box, has a bipartite structure, with intramolecular symmetry generating a saddle-shaped structure that sits astride the DNA. New members of the TBP family, called TBP-like proteins (TBLP, TLF, TLP) or TBP-related factors (TRF1, TRF2,TRP), are similar to the core domain of TBPs, with identical or chemically similar amino acids at many
Probab=26.22 E-value=5.2e+02 Score=23.84 Aligned_cols=82 Identities=18% Similarity=0.296 Sum_probs=57.8
Q ss_pred eEEeEEEEeeecCCCCChHHHHHHHHHhhccc-ccCC---CCCCCCcEEEECCCCCeEEcCCCCCcccCCceEEEecCCC
Q 016895 186 VRVHTVLISTQHDETVTNDEIAADLKEHVIKP-VIPE---KYLDEKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGG 261 (381)
Q Consensus 186 ~rv~tivvS~QH~~~v~~~~l~~~i~e~Vi~~-v~~~---~~~~~~t~~~INPtG~FviGGP~~DtGLTGRKiiVDTYGg 261 (381)
++|.+||-|+.=.-.+++++|...+..---+| -+|. .+-+.+...+|=.||++++=|
T Consensus 2 ~~i~NvVas~~l~~~idL~~la~~~~n~~YePe~fpgli~R~~~P~~t~lIf~sGKivitG------------------- 62 (174)
T cd00652 2 PKIQNIVATVNLGCELDLRKIALAARNAEYNPKRFPGVIMRLREPKTTALIFSSGKMVITG------------------- 62 (174)
T ss_pred cEEEEEEEEEEcCCccCHHHHHhhCCCcEECCCccceEEEEcCCCcEEEEEECCCEEEEEe-------------------
Confidence 47889999999888999999986655443444 2332 223467789999999999754
Q ss_pred ccccccccccCCCCCcccchhhhHHHHHHHHHHHhcccc
Q 016895 262 WGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVANGLAR 300 (381)
Q Consensus 262 ~~~HGGGAfSGKDptKVDRSaAY~AR~iAKniVaaGlA~ 300 (381)
.|=-..+.-+++++++-|-..|...
T Consensus 63 --------------aks~~~~~~a~~~~~~~L~~~g~~~ 87 (174)
T cd00652 63 --------------AKSEEDAKLAARKYARILQKLGFPV 87 (174)
T ss_pred --------------cCCHHHHHHHHHHHHHHHHHcCCCc
Confidence 2334456667888888887777544
No 33
>PF02171 Piwi: Piwi domain; InterPro: IPR003165 This domain is found in the stem cell self-renewal protein Piwi and its relatives in Drosophila melanogaster []. It has been found in the C-terminal of a number of proteins which also contain the PAZ domain (IPR003100 from INTERPRO) in their central region, for example the Argonaute proteins. Several of these proteins have been implicated in the development and maintenance of stem cells through the RNA-mediated gene-quelling mechanisms associated with the protein DICER. ; GO: 0005515 protein binding; PDB: 4F1N_B 3LUH_B 4EI1_A 3QX8_A 3LUC_C 3LUJ_B 3LUD_B 3QX9_A 3LUG_B 3LUK_B ....
Probab=26.00 E-value=53 Score=31.61 Aligned_cols=22 Identities=23% Similarity=0.132 Sum_probs=16.4
Q ss_pred CCCCCCcHHHHHHHHHHHHHHH
Q 016895 134 TSEFMPLSHVLATKLGARLTEV 155 (381)
Q Consensus 134 T~~~MPl~i~lAh~L~~~l~~~ 155 (381)
.+--+|.|+.+||+|++|..+.
T Consensus 279 ~~~~lP~p~~yA~~~a~~~~~~ 300 (302)
T PF02171_consen 279 GPISLPAPLYYAHKLAKRGRNN 300 (302)
T ss_dssp S--SS-HHHHHHHHHHHHHHHH
T ss_pred CCCccCHHHHHHHHHHHHHHhh
Confidence 4566999999999999998653
No 34
>PRK10568 periplasmic protein; Provisional
Probab=25.36 E-value=1.2e+02 Score=28.45 Aligned_cols=51 Identities=16% Similarity=0.220 Sum_probs=30.6
Q ss_pred hHHHHHHHHhhcCCCCcEEEEEEeeeCeEEEEEEeeeeeeccHHHHHHHHHHhh
Q 016895 23 ISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSI 76 (381)
Q Consensus 23 ISDaILDa~L~~Dp~arVA~E~~v~~~~v~i~GEitt~a~vd~~~ivR~~i~~I 76 (381)
|+..|-.+++..+.-..-.+.+-+.+|.|.+.|++.+... ...+.++.+.+
T Consensus 61 I~~~v~~~L~~~~~i~~~~I~V~v~~G~V~L~G~V~s~~~---~~~a~~ia~~v 111 (203)
T PRK10568 61 ITAKVKAALVDHDNIKSTDISVKTHQKVVTLSGFVESQAQ---AEEAVKVAKGV 111 (203)
T ss_pred HHHHHHHHHHhCCCCCCCceEEEEECCEEEEEEEeCCHHH---HHHHHHHHHhC
Confidence 4445555555433333345777788999999999987432 22344444444
No 35
>PF04566 RNA_pol_Rpb2_4: RNA polymerase Rpb2, domain 4; InterPro: IPR007646 RNA polymerases catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial and chloroplast polymerases). Domain 4, is also known as the external 2 domain [].; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 3S17_B 1I6H_B 4A3B_B 3K1F_B 4A3I_B 1TWA_B 3S14_B 3S15_B 2NVX_B 3M3Y_B ....
Probab=25.11 E-value=1.4e+02 Score=23.44 Aligned_cols=26 Identities=23% Similarity=0.356 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHcCCCCcccCCcceeEEEEEec
Q 016895 146 TKLGARLTEVRKNSTCSWLRPDGKTQVTVEYYN 178 (381)
Q Consensus 146 h~L~~~l~~~Rk~~~~~~l~pD~KtQVtv~Y~~ 178 (381)
..|++.|.++|++|.++ .+|++.|+.
T Consensus 15 ~~l~~~lr~~RR~g~i~-------~~vsi~~~~ 40 (63)
T PF04566_consen 15 EELVKTLRNLRRSGKIS-------KEVSIVYDI 40 (63)
T ss_dssp HHHHHHHHHHHHTTSS--------TTSEEEEET
T ss_pred HHHHHHHHHHhhccCCc-------ceeEEEEec
Confidence 46789999999999776 367887764
No 36
>cd01269 PLX Pollux (PLX) Phosphotyrosine-binding (PTB) domain. Pollux (PLX) Phosphotyrosine-binding (PTB) domain. PLX is calmodulin-binding protein containing a TBC domain, which is conserved from yeast to man, but it only has an N-terminal PTB domain in mammals. PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues. In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. More recent studies have found that some types of PTB domains can bind to peptides which are not tyrosine phosphorylated or lack tyrosine residues altogether.
Probab=24.60 E-value=2.2e+02 Score=25.85 Aligned_cols=82 Identities=24% Similarity=0.306 Sum_probs=47.9
Q ss_pred EEEEEEeeeeeeccHHHHHHHHHHhhCCCCCCCCCCCCceEEEEe---eccCChhhhccccCCCCCCCCCCCCCccc---
Q 016895 51 VMVFGEITTKAKVDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVN---IEQQSPDIAQGVHGHFTKRPEDIGAGDQG--- 124 (381)
Q Consensus 51 v~i~GEitt~a~vd~~~ivR~~i~~IGY~~~~~gfd~~~~~v~~~---i~~QS~dIa~gV~~~~~~~~~~~GAGDQG--- 124 (381)
|+..|.+|-..+--.+.++++.|++.++.+....-+.+|...++. |.-.|||=.+-+.. ....+|--==||
T Consensus 6 ~~~~~~~~~~~~~~~~~li~e~I~K~~~~~~~kr~~nrtm~~~I~~~~v~lispdtK~vl~~---k~f~dISsC~qg~~~ 82 (129)
T cd01269 6 VLYCGRVTVTHKKAPSSLIDDCIEKFSLHEQQRLKDNRTMLFQVGRFEINLISPDTKSVVLE---KNFKDISSCSQGIKH 82 (129)
T ss_pred EEEEeeEEEeeccCChHHHHHHHHHhhhhhhhhccCCcEEEEEEeccceEEEcCCcceEEEe---cCccccchhhcCCCC
Confidence 556777776555567899999999999998777777777433322 12234443333321 111111111111
Q ss_pred -ceeeeecCCCC
Q 016895 125 -HMFGYATDETS 135 (381)
Q Consensus 125 -imfGYA~~ET~ 135 (381)
=-|||=|.||.
T Consensus 83 ~dhFgFIcrEs~ 94 (129)
T cd01269 83 VDHFGFICRESP 94 (129)
T ss_pred cceEEEEeccCC
Confidence 24999999987
No 37
>PRK04964 hypothetical protein; Provisional
Probab=24.06 E-value=65 Score=25.97 Aligned_cols=32 Identities=28% Similarity=0.510 Sum_probs=21.3
Q ss_pred CCCCCCcccceeeeecCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCC
Q 016895 116 EDIGAGDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRKNSTCS 162 (381)
Q Consensus 116 ~~~GAGDQGimfGYA~~ET~~~MPl~i~lAh~L~~~l~~~Rk~~~~~ 162 (381)
.+||.|||| |+|-+|..|-| .|.++..+..+|
T Consensus 13 a~IgSGd~g------------YiP~Ai~ca~k---~L~~IAad~~Lp 44 (66)
T PRK04964 13 AEIGSGDLG------------YVPDALGCVLK---ALNEIAADEALP 44 (66)
T ss_pred HHhcCCccc------------cCcHHHHHHHH---HHHHHhccccCC
Confidence 368999998 68998888754 444444433333
No 38
>PRK00394 transcription factor; Reviewed
Probab=22.98 E-value=1.3e+02 Score=28.04 Aligned_cols=58 Identities=26% Similarity=0.407 Sum_probs=41.5
Q ss_pred eeEEeEEEEeeecCCCCChHHHHHHH--HHhhcccc-cCC---CCCCCCcEEEECCCCCeEEcC
Q 016895 185 PVRVHTVLISTQHDETVTNDEIAADL--KEHVIKPV-IPE---KYLDEKTIFHLNPSGRFVIGG 242 (381)
Q Consensus 185 p~rv~tivvS~QH~~~v~~~~l~~~i--~e~Vi~~v-~~~---~~~~~~t~~~INPtG~FviGG 242 (381)
.++|.+||-|+.=.-.++++++...+ ..---+|. +|. .+.+.+..++|=+||++++=|
T Consensus 91 ~~~i~NiVas~~l~~~i~L~~la~~~~~~~~~YePe~fPglvyR~~~pk~~~lIF~SGKvvitG 154 (179)
T PRK00394 91 EIKVQNIVASADLGVELNLNAIAIGLGLENIEYEPEQFPGLVYRLDDPKVVVLLFGSGKLVITG 154 (179)
T ss_pred ceEEEEEEEEEEcCCeEcHHHHHHhcCcCCcEECcccCceEEEEecCCcEEEEEEcCCEEEEEe
Confidence 37889999999888889999997665 33323332 332 223567889999999999755
No 39
>PF06786 UPF0253: Uncharacterised protein family (UPF0253); InterPro: IPR009624 This is a group of proteins of unknown function.
Probab=22.61 E-value=74 Score=25.66 Aligned_cols=32 Identities=31% Similarity=0.561 Sum_probs=21.5
Q ss_pred CCCCCCcccceeeeecCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCC
Q 016895 116 EDIGAGDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRKNSTCS 162 (381)
Q Consensus 116 ~~~GAGDQGimfGYA~~ET~~~MPl~i~lAh~L~~~l~~~Rk~~~~~ 162 (381)
.+||.|||| |+|-+|..|-| .|.++..+..+|
T Consensus 13 a~IgSGd~g------------YiP~Ai~calk---~Ln~iAad~~Lp 44 (66)
T PF06786_consen 13 AQIGSGDQG------------YIPDAIGCALK---TLNDIAADEALP 44 (66)
T ss_pred HHhcCCccc------------cCcHHHHHHHH---HHHHHHcccccC
Confidence 368999998 68998888755 444444444333
No 40
>PRK14053 methyltransferase; Provisional
Probab=22.35 E-value=1.1e+02 Score=29.43 Aligned_cols=42 Identities=24% Similarity=0.379 Sum_probs=33.5
Q ss_pred hcCCCCcEEEEEEeeeCe----EEEEEEeeeeeeccHHHHHHHHHHh
Q 016895 33 EQDPESKVACETCTKTNM----VMVFGEITTKAKVDYEKIVRDTCRS 75 (381)
Q Consensus 33 ~~Dp~arVA~E~~v~~~~----v~i~GEitt~a~vd~~~ivR~~i~~ 75 (381)
--||.|+||+=||.++-. .-|.|-..|. ++=+++++++++.+
T Consensus 17 vG~~~S~VAVvTL~S~~~~~~gaAI~G~c~TE-NlGIEKvI~NvisN 62 (194)
T PRK14053 17 VGNPESRIAVVTLASSIESFPEAAIWGSSKTE-NLGVEKIIVNVISN 62 (194)
T ss_pred eCCCCCcEEEEEccccccccCCceEEeecccc-ccCHHHHHHHhhcC
Confidence 348999999999999754 5567766665 78899999999765
No 41
>PRK11023 outer membrane lipoprotein; Provisional
Probab=22.32 E-value=1.4e+02 Score=27.84 Aligned_cols=42 Identities=19% Similarity=0.232 Sum_probs=29.1
Q ss_pred hhhhh-hHHHHHHHHhhcCCCCc--EEEEEEeeeCeEEEEEEeeee
Q 016895 18 KLCDQ-ISDAVLDACLEQDPESK--VACETCTKTNMVMVFGEITTK 60 (381)
Q Consensus 18 KicDq-ISDaILDa~L~~Dp~ar--VA~E~~v~~~~v~i~GEitt~ 60 (381)
++-|+ |+-.|..+ |.+||.-+ -.+.+-+.+|.|.+.|++.+.
T Consensus 44 ~~dD~~i~~~V~~a-L~~~~~l~~~~~I~V~v~~G~V~L~G~V~~~ 88 (191)
T PRK11023 44 QVDDGTLELRVNNA-LSKDEQIKKEARINVTAYQGKVLLTGQSPNA 88 (191)
T ss_pred eehhHHHHHHHHHH-HhhCcccCcCceEEEEEECCEEEEEEEeCCH
Confidence 44444 44444444 45577554 468888999999999999885
No 42
>KOG1406 consensus Peroxisomal 3-ketoacyl-CoA-thiolase P-44/SCP2 [Lipid transport and metabolism]
Probab=21.02 E-value=54 Score=33.54 Aligned_cols=21 Identities=43% Similarity=0.839 Sum_probs=17.8
Q ss_pred EEEECCCCCeE-EcCCCCCccc
Q 016895 229 IFHLNPSGRFV-IGGPHGDAGL 249 (381)
Q Consensus 229 ~~~INPtG~Fv-iGGP~~DtGL 249 (381)
+|.|||+|-++ -|=|.|-|||
T Consensus 334 kwvinpsggliskghplgatgl 355 (408)
T KOG1406|consen 334 KWVINPSGGLISKGHPLGATGL 355 (408)
T ss_pred eEEECCCCccccCCCcCccchH
Confidence 89999999876 5778888886
No 43
>COG4669 EscJ Type III secretory pathway, lipoprotein EscJ [Intracellular trafficking and secretion]
Probab=20.71 E-value=1.2e+02 Score=30.14 Aligned_cols=94 Identities=15% Similarity=0.187 Sum_probs=60.0
Q ss_pred cCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCcccCCcceeEEEEEecCCCceeeeEEeEEEEeeecCCCCChHHHHHHH
Q 016895 131 TDETSEFMPLSHVLATKLGARLTEVRKNSTCSWLRPDGKTQVTVEYYNDNGAMVPVRVHTVLISTQHDETVTNDEIAADL 210 (381)
Q Consensus 131 ~~ET~~~MPl~i~lAh~L~~~l~~~Rk~~~~~~l~pD~KtQVtv~Y~~~~g~~~p~rv~tivvS~QH~~~v~~~~l~~~i 210 (381)
..+|+|--=+-+.++.+|.+-|+++ +|.+ |++.||++.-++++| ++..-.+.-+-+-|.++++++-+..+|
T Consensus 97 sSP~eEkaR~~~~~eQ~le~tLs~m--DGVi-----~ArV~I~lp~~~~~g--~~~~P~saSVfIky~~~~nl~~~v~~I 167 (246)
T COG4669 97 SSPTEEKARLNYAKEQQLEQTLSKM--DGVI-----SARVHISLPEDDDEG--KNALPSSASVFIKYSPDVNLSIYVSQI 167 (246)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHhc--CceE-----EEEEEEEcCCCCccC--CCCCCceeEEEEEecCCCChhHhHHHH
Confidence 5677777767778888888888665 3554 345555443222334 444445566667999999999999999
Q ss_pred HHhhcccccCCCCCCCCcEEEECCC
Q 016895 211 KEHVIKPVIPEKYLDEKTIFHLNPS 235 (381)
Q Consensus 211 ~e~Vi~~v~~~~~~~~~t~~~INPt 235 (381)
|..|-. .+|. +-=++....+.|.
T Consensus 168 K~LV~n-Sv~g-L~YenISVVl~~~ 190 (246)
T COG4669 168 KRLVAN-SVPG-LQYENISVVLVPA 190 (246)
T ss_pred HHHHHh-ccCC-CchhceEEEEeec
Confidence 887664 4453 2224555555553
No 44
>PRK00964 tetrahydromethanopterin S-methyltransferase subunit A; Provisional
Probab=20.33 E-value=1.1e+02 Score=30.09 Aligned_cols=42 Identities=26% Similarity=0.337 Sum_probs=33.0
Q ss_pred hcCCCCcEEEEEEeeeCe--------EEEEEEeeeeeeccHHHHHHHHHHh
Q 016895 33 EQDPESKVACETCTKTNM--------VMVFGEITTKAKVDYEKIVRDTCRS 75 (381)
Q Consensus 33 ~~Dp~arVA~E~~v~~~~--------v~i~GEitt~a~vd~~~ivR~~i~~ 75 (381)
--||+|.||+=||.++.. .-|.|-..|. ++=++++++++|.+
T Consensus 20 vGd~~SpVAV~Tl~S~~~~~~~~~agaAi~G~~~TE-NlGIEKvI~NvisN 69 (225)
T PRK00964 20 VGDPESPVAVVTLGSHLLDQPIIDAGAAISGPCHTE-NLGIEKVIANVISN 69 (225)
T ss_pred eCCCCCceEEEEccccccccchhhcCceeecccccc-cccHHHHHHHHhcC
Confidence 359999999999998765 3456665554 78899999999765
Done!