Query 016902
Match_columns 380
No_of_seqs 375 out of 3002
Neff 8.4
Searched_HMMs 29240
Date Mon Mar 25 05:41:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016902.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016902hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4aps_A DI-OR tripeptide H+ sym 99.8 6.4E-19 2.2E-23 175.8 23.3 185 65-282 9-199 (491)
2 2xut_A Proton/peptide symporte 99.8 2.4E-19 8.1E-24 180.5 19.1 210 69-308 12-227 (524)
3 3o7q_A L-fucose-proton symport 99.8 1.5E-16 5.1E-21 155.8 25.0 181 65-278 22-228 (438)
4 1pw4_A Glycerol-3-phosphate tr 99.7 5.2E-16 1.8E-20 152.3 15.3 180 67-279 26-206 (451)
5 2gfp_A EMRD, multidrug resista 99.6 2.5E-15 8.6E-20 144.4 14.9 166 73-274 4-169 (375)
6 1pw4_A Glycerol-3-phosphate tr 99.5 3.5E-13 1.2E-17 132.1 20.3 180 68-279 251-433 (451)
7 4gc0_A D-xylose-proton symport 99.5 2.9E-13 1E-17 134.5 18.0 150 105-271 55-212 (491)
8 3o7q_A L-fucose-proton symport 99.4 7.1E-12 2.4E-16 122.3 20.9 167 70-274 259-427 (438)
9 2cfq_A Lactose permease; trans 99.4 4.3E-12 1.5E-16 124.2 16.6 169 75-278 226-398 (417)
10 4aps_A DI-OR tripeptide H+ sym 99.2 2.3E-11 7.7E-16 120.9 10.5 184 72-282 286-474 (491)
11 4gc0_A D-xylose-proton symport 99.2 1.2E-09 4.3E-14 108.2 21.7 165 88-282 295-465 (491)
12 2cfq_A Lactose permease; trans 99.2 2E-12 6.7E-17 126.7 -0.2 169 70-269 8-177 (417)
13 2gfp_A EMRD, multidrug resista 98.9 6.3E-10 2.1E-14 106.5 3.6 164 69-266 199-363 (375)
14 2xut_A Proton/peptide symporte 98.3 4.4E-07 1.5E-11 90.7 4.8 90 186-281 404-504 (524)
15 4aw6_A CAAX prenyl protease 1 35.1 2.5E+02 0.0085 27.3 10.7 59 96-155 149-214 (482)
No 1
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.83 E-value=6.4e-19 Score=175.76 Aligned_cols=185 Identities=23% Similarity=0.395 Sum_probs=161.7
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-----cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hcchhHH
Q 016902 65 TGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYV-----MHKSFADSSNAVNNFLGISQASSVLGGFLADA-YLGRYWT 138 (380)
Q Consensus 65 ~~~~~~~~~i~~~~~~~~~~~~~i~~~l~~yl~~~-----~~~s~~~a~~~~~~~~~~~~~~~l~~g~lsD~-~~GR~~~ 138 (380)
+++++..+.+++..++..+++|++..+++.|+++. +|++..+.+++.+.+.++..++.+++|+++|| + |||++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~-g~r~~ 87 (491)
T 4aps_A 9 FGQPLGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRII-GARPA 87 (491)
T ss_dssp --CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS-CHHHH
T ss_pred hccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-cchHH
Confidence 44556788888899999999999999999999998 99999999999999999999999999999999 6 99999
Q ss_pred HHHHHHHHHHHHHHHHhhhhcccCCCCCCcccccccccCCCCCCcchhHHHHHHHHHHHHHhccchhhhhhhHhhccCCC
Q 016902 139 IAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDE 218 (380)
Q Consensus 139 i~i~~~l~~lg~~~l~l~~~~~~l~~~~~~c~~~~~~~~~c~~~~~~~~~~l~~~l~l~g~g~g~~~~~~~~~~ad~f~~ 218 (380)
++++.++..++.++++++ .+...+++++++.|+|.|+..++..++++|.+|+
T Consensus 88 ~~~~~~~~~~~~~~~~~~----------------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~ 139 (491)
T 4aps_A 88 VFWGGVLIMLGHIVLALP----------------------------FGASALFGSIILIIIGTGFLKPNVSTLVGTLYDE 139 (491)
T ss_dssp HHHHHHHHHHHHHHHHSC----------------------------CSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSS
T ss_pred HHHHHHHHHHHHHHHHHh----------------------------hhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCc
Confidence 999999999998887764 2456688899999999999999999999999997
Q ss_pred CCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHHhhccc
Q 016902 219 RSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPL 282 (380)
Q Consensus 219 ~~~~~~~~r~~~~~~~~~~~~iG~~i~~~i~~~i~~~~gw~~~f~i~~~~~~~~~i~~~~~~~~ 282 (380)
++. .|+.++++++.+.++|..++|.+++++.+..||++.|++.++..++++++++...++
T Consensus 140 ~~~----~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~ 199 (491)
T 4aps_A 140 HDR----RRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKK 199 (491)
T ss_dssp CTT----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ccc----cceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhCcc
Confidence 652 277889999999999999999999999999999999999888777776665544433
No 2
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.82 E-value=2.4e-19 Score=180.50 Aligned_cols=210 Identities=25% Similarity=0.461 Sum_probs=160.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcC------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHH
Q 016902 69 IAALFIFGNEMAERMAYFGLSVNMVTFMFYVMH------KSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIF 142 (380)
Q Consensus 69 ~~~~~i~~~~~~~~~~~~~i~~~l~~yl~~~~~------~s~~~a~~~~~~~~~~~~~~~l~~g~lsD~~~GR~~~i~i~ 142 (380)
+.++.+.+..++..+++|++..+++.|+++++| ++..+.+++.+.+.++..++.+++|+++||++|||+++.++
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~ 91 (524)
T 2xut_A 12 RQIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWL 91 (524)
T ss_dssp -CCTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHH
Confidence 445677788899999999999999999999999 99999999999999999999999999999966999999999
Q ss_pred HHHHHHHHHHHHhhhhcccCCCCCCcccccccccCCCCCCcchhHHHHHHHHHHHHHhccchhhhhhhHhhccCCCCCch
Q 016902 143 TTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKD 222 (380)
Q Consensus 143 ~~l~~lg~~~l~l~~~~~~l~~~~~~c~~~~~~~~~c~~~~~~~~~~l~~~l~l~g~g~g~~~~~~~~~~ad~f~~~~~~ 222 (380)
.++..++.+++.++. .+...+++++++.|+|.+...++..++++|.+|+++
T Consensus 92 ~~~~~~~~~~~~~~~---------------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~-- 142 (524)
T 2xut_A 92 SLIYCVGHAFLAIFE---------------------------HSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSN-- 142 (524)
T ss_dssp HHHHHHHHHHHHHTS---------------------------SCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTT--
T ss_pred HHHHHHHHHHHHHhc---------------------------ccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccc--
Confidence 999999888877641 146778889999999999999999999999999766
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHHhhcccccccCCCCCccchHHHHHHH
Q 016902 223 YKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVA 302 (380)
Q Consensus 223 ~~~~r~~~~~~~~~~~~iG~~i~~~i~~~i~~~~gw~~~f~i~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 302 (380)
+..+...+++++...++|..+++.+++++.+..||++.|++.+++.++++++++...+.++..+|++++..+..+.+..
T Consensus 143 -r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (524)
T 2xut_A 143 -KSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFWLGRKRYIHMPPEPKDPHGFLPVIRS 221 (524)
T ss_dssp -TTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHHHSSSSSCCCCC---------------
T ss_pred -hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCccchhHHHHHHH
Confidence 2223556777999999999999999999998889999999988887777666655555554444544444455555556
Q ss_pred HHhhcc
Q 016902 303 AFRKRH 308 (380)
Q Consensus 303 a~~~r~ 308 (380)
++|+++
T Consensus 222 ~~~~~~ 227 (524)
T 2xut_A 222 ALLTKV 227 (524)
T ss_dssp -----C
T ss_pred HHhhhh
Confidence 666554
No 3
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.76 E-value=1.5e-16 Score=155.78 Aligned_cols=181 Identities=12% Similarity=-0.011 Sum_probs=148.6
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHH
Q 016902 65 TGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTT 144 (380)
Q Consensus 65 ~~~~~~~~~i~~~~~~~~~~~~~i~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~l~~g~lsD~~~GR~~~i~i~~~ 144 (380)
+++++.+..+.+..++..+..+.+ ..+..++.+++|++..+.+++.+.+.++..++.+++|+++||+ |||++++++.+
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~-g~r~~l~~~~~ 99 (438)
T 3o7q_A 22 RSYIIPFALLCSLFFLWAVANNLN-DILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKL-SYKAGIITGLF 99 (438)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHS-CHHHHHHHHHH
T ss_pred hHhHHHHHHHHHHHHHHHHHHHhH-HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-cchHHHHHHHH
Confidence 445666666666666666665544 4455668889999999999999999999999999999999998 99999999999
Q ss_pred HHHHHHHHHHhhhhcccCCCCCCcccccccccCCCCCCcchhHHHHHHHHHHHHHhccchhhhhhhHhhccCCCCCchhh
Q 016902 145 IYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYK 224 (380)
Q Consensus 145 l~~lg~~~l~l~~~~~~l~~~~~~c~~~~~~~~~c~~~~~~~~~~l~~~l~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~ 224 (380)
+..++.+++.+.... .+...+++++++.|+|.|...+...++++|.+|+++
T Consensus 100 ~~~~~~~~~~~~~~~-------------------------~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~---- 150 (438)
T 3o7q_A 100 LYALGAALFWPAAEI-------------------------MNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESS---- 150 (438)
T ss_dssp HHHHHHHHHHHHHHT-------------------------TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTT----
T ss_pred HHHHHHHHHHhcccc-------------------------ccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchh----
Confidence 999998888432110 357788999999999999999999999999999888
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHhh-hcch-------------------------hhHHHHHHHHHHHHHHHHHHh
Q 016902 225 THLDRFFNFFYLSVTVGAIVAFTLVVYIQ-MEHG-------------------------WGSAFGALAIAMGISNMLFFI 278 (380)
Q Consensus 225 ~~r~~~~~~~~~~~~iG~~i~~~i~~~i~-~~~g-------------------------w~~~f~i~~~~~~~~~i~~~~ 278 (380)
|+..+++++....+|..+++.+++++. +..+ |++.|++.+++.++..++++.
T Consensus 151 --r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~ 228 (438)
T 3o7q_A 151 --GHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIML 228 (438)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999887 5544 999998766665555444433
No 4
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.67 E-value=5.2e-16 Score=152.32 Aligned_cols=180 Identities=12% Similarity=0.058 Sum_probs=146.5
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHH
Q 016902 67 GWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIY 146 (380)
Q Consensus 67 ~~~~~~~i~~~~~~~~~~~~~i~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~l~~g~lsD~~~GR~~~i~i~~~l~ 146 (380)
+|+.++.+.+..++..+..+.+... ..++.+++ .+..+.+++.+.+.++..++.+++|+++||+ |||++++++.++.
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-g~r~~l~~~~~~~ 102 (451)
T 1pw4_A 26 RWQIFLGIFFGYAAYYLVRKNFALA-MPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRS-NPRVFLPAGLILA 102 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSHHHH-HHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhc-CchHHHHHHHHHH
Confidence 4555666666666666655544444 45566677 9999999999999999999999999999998 9999999999999
Q ss_pred HHHHHHHHhhhhcccCCCCCCcccccccccCCCCCCcchhHHHHHHHHHHHHHhccchhhhhhhHhhccCCCCCchhhhh
Q 016902 147 LAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTH 226 (380)
Q Consensus 147 ~lg~~~l~l~~~~~~l~~~~~~c~~~~~~~~~c~~~~~~~~~~l~~~l~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~ 226 (380)
.++.+++.+.... . .+...+++++++.|+|.+...+...++++|.+|+++
T Consensus 103 ~~~~~~~~~~~~~---~---------------------~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~------ 152 (451)
T 1pw4_A 103 AAVMLFMGFVPWA---T---------------------SSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKE------ 152 (451)
T ss_dssp HHHHHHHHHCHHH---H---------------------SSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTH------
T ss_pred HHHHHHHHhhhhc---c---------------------ccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchh------
Confidence 9999888772100 0 245568889999999999999999999999999777
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhhcch-hhHHHHHHHHHHHHHHHHHHhh
Q 016902 227 LDRFFNFFYLSVTVGAIVAFTLVVYIQMEHG-WGSAFGALAIAMGISNMLFFIG 279 (380)
Q Consensus 227 r~~~~~~~~~~~~iG~~i~~~i~~~i~~~~g-w~~~f~i~~~~~~~~~i~~~~~ 279 (380)
|+..+++++.+..+|..+++.+++++.+..| |++.|++.+++.++..++.+..
T Consensus 153 r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~ 206 (451)
T 1pw4_A 153 RGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAM 206 (451)
T ss_dssp HHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999888888 9999998887766655544443
No 5
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.63 E-value=2.5e-15 Score=144.39 Aligned_cols=166 Identities=12% Similarity=0.100 Sum_probs=141.9
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHH
Q 016902 73 FIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTG 152 (380)
Q Consensus 73 ~i~~~~~~~~~~~~~i~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~l~~g~lsD~~~GR~~~i~i~~~l~~lg~~~ 152 (380)
.+.+..++..+....+...+ +.+.+++|.+..+.+.+.+.+.++..++.+++|+++||+ |||++++++.++..++.++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~~ 81 (375)
T 2gfp_A 4 MLVLLVAVGQMAQTIYIPAI-ADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRV-GRRPVILVGMSIFMLATLV 81 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-HHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTS-CCCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhh-HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCchhHHHHHHHHHHHHHH
Confidence 34445555555555444444 446778999999999999999999999999999999998 9999999999999999888
Q ss_pred HHhhhhcccCCCCCCcccccccccCCCCCCcchhHHHHHHHHHHHHHhccchhhhhhhHhhccCCCCCchhhhhhhhHHH
Q 016902 153 ITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFN 232 (380)
Q Consensus 153 l~l~~~~~~l~~~~~~c~~~~~~~~~c~~~~~~~~~~l~~~l~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~ 232 (380)
+.++ .+...+++++++.|++.+...+...++..|.+|+++ |++.++
T Consensus 82 ~~~~----------------------------~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~ 127 (375)
T 2gfp_A 82 AVTT----------------------------SSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQ------LRHANS 127 (375)
T ss_dssp HHHH----------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS------CCSHHH
T ss_pred HHHh----------------------------ccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHH------HHHHHH
Confidence 8775 457788899999999999999999999999999877 999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHH
Q 016902 233 FFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNM 274 (380)
Q Consensus 233 ~~~~~~~iG~~i~~~i~~~i~~~~gw~~~f~i~~~~~~~~~i 274 (380)
+++....+|..+++.+++++.+..||++.|++.++..++..+
T Consensus 128 ~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 169 (375)
T 2gfp_A 128 LLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVTF 169 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999888999999987776665544
No 6
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.54 E-value=3.5e-13 Score=132.07 Aligned_cols=180 Identities=15% Similarity=0.122 Sum_probs=147.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-chhHHHHHHHHHH
Q 016902 68 WIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYL-GRYWTIAIFTTIY 146 (380)
Q Consensus 68 ~~~~~~i~~~~~~~~~~~~~i~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~l~~g~lsD~~~-GR~~~i~i~~~l~ 146 (380)
.+.++.+++..++..+.++++..+++.|+++.+|++..+++.+.+...++..++.++.|+++||+. |||+.+.++.++.
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~ 330 (451)
T 1pw4_A 251 NKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTL 330 (451)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHH
Confidence 355677777778888888889999999999889999999999999999999999999999999942 8888888777665
Q ss_pred H-HHHHHHHhhhhcccCCCCCCcccccccccCCCCCCcchhHHHHHHHHHHHHHhccchhhhhhhHhhccCCCCCchhhh
Q 016902 147 L-AGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKT 225 (380)
Q Consensus 147 ~-lg~~~l~l~~~~~~l~~~~~~c~~~~~~~~~c~~~~~~~~~~l~~~l~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~ 225 (380)
. ++.+++.+. ++ .+...+++..++.|++.++..+....+..|.+|++.
T Consensus 331 ~~~~~~~~~~~-------~~-------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~----- 379 (451)
T 1pw4_A 331 VTIATIVYWMN-------PA-------------------GNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKA----- 379 (451)
T ss_dssp HHHHHHHTTSC-------CT-------------------TCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTH-----
T ss_pred HHHHHHHHHHh-------cc-------------------cCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhh-----
Confidence 5 555544332 10 245566677788889888888888999999999877
Q ss_pred hhhhHHHHHHHHHHH-HHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHHhh
Q 016902 226 HLDRFFNFFYLSVTV-GAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIG 279 (380)
Q Consensus 226 ~r~~~~~~~~~~~~i-G~~i~~~i~~~i~~~~gw~~~f~i~~~~~~~~~i~~~~~ 279 (380)
|++.+++++...++ |..+++.+.+++.+..||...|++.+++.+++.++.+..
T Consensus 380 -~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 433 (451)
T 1pw4_A 380 -AGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVV 433 (451)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred -hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999 999999999999999999999998888777776655443
No 7
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.52 E-value=2.9e-13 Score=134.51 Aligned_cols=150 Identities=13% Similarity=0.159 Sum_probs=112.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccccccccCCCCCCcc
Q 016902 105 ADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKS 184 (380)
Q Consensus 105 ~~a~~~~~~~~~~~~~~~l~~g~lsD~~~GR~~~i~i~~~l~~lg~~~l~l~~~~~~l~~~~~~c~~~~~~~~~c~~~~~ 184 (380)
...+++++.+.++..++++++|+++||+ |||++++++.+++.++.++.+.+......... ... -...-.
T Consensus 55 ~~~g~~~s~~~~G~~iG~~~~G~laDr~-GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~--~~~--------~~~~~a 123 (491)
T 4gc0_A 55 SLLGFCVASALIGCIIGGALGGYCSNRF-GRRDSLKIAAVLFFISGVGSAWPELGFTSINP--DNT--------VPVYLA 123 (491)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSS--SSS--------CCGGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcc--hhH--------HHHHHh
Confidence 3456788889999999999999999998 99999999999999999988754211000000 000 000011
Q ss_pred hhHHHHHHHHHHHHHhccchhhhhhhHhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhc--------c
Q 016902 185 WQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQME--------H 256 (380)
Q Consensus 185 ~~~~~l~~~l~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~iG~~i~~~i~~~i~~~--------~ 256 (380)
.+...++++|++.|+|.|+..+..+.+++|..|++. |+...++++.+..+|.++++.++..+... .
T Consensus 124 ~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~------rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 197 (491)
T 4gc0_A 124 GYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHI------RGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTD 197 (491)
T ss_dssp GCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGG------HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTT
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHh------hhhhHHhhhhhhhhhhhhhhhcchhhccccccccccch
Confidence 468889999999999999999999999999999887 99999999999999998888777665432 2
Q ss_pred hhhHHHHHHHHHHHH
Q 016902 257 GWGSAFGALAIAMGI 271 (380)
Q Consensus 257 gw~~~f~i~~~~~~~ 271 (380)
+|++.+.+..+..++
T Consensus 198 ~~~~~~~~~~~~~~~ 212 (491)
T 4gc0_A 198 GWRYMFASECIPALL 212 (491)
T ss_dssp HHHHHHHTTHHHHHH
T ss_pred hhHHHhhhhhhhhhh
Confidence 466666554444433
No 8
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.44 E-value=7.1e-12 Score=122.34 Aligned_cols=167 Identities=10% Similarity=0.009 Sum_probs=131.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHH-HHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHH
Q 016902 70 AALFIFGNEMAERMAYFGLSVNMVTF-MFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLA 148 (380)
Q Consensus 70 ~~~~i~~~~~~~~~~~~~i~~~l~~y-l~~~~~~s~~~a~~~~~~~~~~~~~~~l~~g~lsD~~~GR~~~i~i~~~l~~l 148 (380)
.++..++..++.....+++..+++.| +++.+|++..+++...+.+.++..++.+++|+++||+ |||+++.++.++..+
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~-~~~~~~~~~~~~~~~ 337 (438)
T 3o7q_A 259 HWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRF-APHKVLAAYALIAMA 337 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHH
Confidence 45556666666777777888899999 8888899999999999999999999999999999997 999999999888888
Q ss_pred HHHHHHhhhhcccCCCCCCcccccccccCCCCCCcchhHHHHHHHHHHHHHhccchhhhhhhHhhccCCCCCchhhhhhh
Q 016902 149 GLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLD 228 (380)
Q Consensus 149 g~~~l~l~~~~~~l~~~~~~c~~~~~~~~~c~~~~~~~~~~l~~~l~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~ 228 (380)
+.+++... .+.. .++..++.+++.+...+...++..|.++++ ++
T Consensus 338 ~~~~~~~~----------------------------~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-------~~ 381 (438)
T 3o7q_A 338 LCLISAFA----------------------------GGHV-GLIALTLCSAFMSIQYPTIFSLGIKNLGQD-------TK 381 (438)
T ss_dssp HHHHHHHC----------------------------CHHH-HHHHHHHHHHHHTTHHHHHHHHHHSSCGGG-------HH
T ss_pred HHHHHHHc----------------------------CCcH-HHHHHHHHHHHHHHHHHHHHHHHHhhcccc-------cc
Confidence 77666553 1222 234457788888888999999989998843 34
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhcch-hhHHHHHHHHHHHHHHH
Q 016902 229 RFFNFFYLSVTVGAIVAFTLVVYIQMEHG-WGSAFGALAIAMGISNM 274 (380)
Q Consensus 229 ~~~~~~~~~~~iG~~i~~~i~~~i~~~~g-w~~~f~i~~~~~~~~~i 274 (380)
.+.++.. ...+|..++|.+.+++.+..| ++..|++.+++.++.++
T Consensus 382 ~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~ 427 (438)
T 3o7q_A 382 YGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFI 427 (438)
T ss_dssp HHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHHHH
T ss_pred chhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 4444444 456999999999999999988 99999877665554433
No 9
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.40 E-value=4.3e-12 Score=124.24 Aligned_cols=169 Identities=10% Similarity=0.039 Sum_probs=120.7
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHhcCCC---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHH
Q 016902 75 FGNEMAERMAYFGLSVNMVTFMFYVMHKS---FADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLT 151 (380)
Q Consensus 75 ~~~~~~~~~~~~~i~~~l~~yl~~~~~~s---~~~a~~~~~~~~~~~~~~~l~~g~lsD~~~GR~~~i~i~~~l~~lg~~ 151 (380)
++..++....++....+++.|+.+.++.. ....+...++..++..++.+++|+++||+ |||+++.++.++..++.+
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~l~~~~~~~~~~~~ 304 (417)
T 2cfq_A 226 SLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRI-GGKNALLLAGTIMSVRII 304 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh-cHHHHHHHHHHHHHHHHH
Confidence 33333333444445566788887766532 23334555555666777889999999998 999999888877777665
Q ss_pred HHHhhhhcccCCCCCCcccccccccCCCCCCcchhHHHHHHHHHHHHHhccchhhhhhhHhhccCCCCCchhhhhhhhHH
Q 016902 152 GITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFF 231 (380)
Q Consensus 152 ~l~l~~~~~~l~~~~~~c~~~~~~~~~c~~~~~~~~~~l~~~l~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~ 231 (380)
++.+. .+...+++..++.+++.+...+....+.+|.+|++. |++.+
T Consensus 305 ~~~~~----------------------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~------~g~~~ 350 (417)
T 2cfq_A 305 GSSFA----------------------------TSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRF------SATIY 350 (417)
T ss_dssp HHTTC----------------------------CSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHH------HHHHH
T ss_pred HHHHh----------------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH------HHHHH
Confidence 55432 123345555556677766666777889999999776 89988
Q ss_pred HH-HHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHHh
Q 016902 232 NF-FYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFI 278 (380)
Q Consensus 232 ~~-~~~~~~iG~~i~~~i~~~i~~~~gw~~~f~i~~~~~~~~~i~~~~ 278 (380)
++ ++....+|+.++|.+++++.+..|+...|.+.+++.+++.++.+.
T Consensus 351 g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~ 398 (417)
T 2cfq_A 351 LVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVF 398 (417)
T ss_dssp HHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHh
Confidence 88 577888999999999999988888888888877777766655443
No 10
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.23 E-value=2.3e-11 Score=120.93 Aligned_cols=184 Identities=12% Similarity=0.017 Sum_probs=128.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHH-----HHHHHH
Q 016902 72 LFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIA-----IFTTIY 146 (380)
Q Consensus 72 ~~i~~~~~~~~~~~~~i~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~l~~g~lsD~~~GR~~~i~-----i~~~l~ 146 (380)
+.+.+..++..+.++....+++.|+.+.++.+....+.......++..++.++.|+++||+ |||+... ++.++.
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~-~~r~~~~~~~~~~~~~~~ 364 (491)
T 4aps_A 286 IPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAW-KKNQPSSPTKFAVGLMFA 364 (491)
T ss_dssp HHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHT-TTC---CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHH-hccCCCchHHHHHHHHHH
Confidence 3344444444455555666788899888888766666667777777788888999999997 9876544 666666
Q ss_pred HHHHHHHHhhhhcccCCCCCCcccccccccCCCCCCcchhHHHHHHHHHHHHHhccchhhhhhhHhhccCCCCCchhhhh
Q 016902 147 LAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTH 226 (380)
Q Consensus 147 ~lg~~~l~l~~~~~~l~~~~~~c~~~~~~~~~c~~~~~~~~~~l~~~l~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~ 226 (380)
.++.+++.+......- ....+...++++.++.++|.+...+....+..|.+|++.
T Consensus 365 ~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~------ 419 (491)
T 4aps_A 365 GLSFLLMAIPGALYGT-------------------SGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAF------ 419 (491)
T ss_dssp HHHHTTTHHHHHHCCC-------------------CTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTC------
T ss_pred HHHHHHHHHHHHhcCC-------------------CCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHH------
Confidence 6665555443211000 000234556677788899998888999999999999988
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHHhhccc
Q 016902 227 LDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPL 282 (380)
Q Consensus 227 r~~~~~~~~~~~~iG~~i~~~i~~~i~~~~gw~~~f~i~~~~~~~~~i~~~~~~~~ 282 (380)
|+.+.++++...++|..+++.+.+++.+. ++.+.|++.+++.+++.++++...+.
T Consensus 420 ~g~~~g~~~~~~~~g~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (491)
T 4aps_A 420 NSQMMSMWFLSSSVGSALNAQLVTLYNAK-SEVAYFSYFGLGSVVLGIVLVFLSKR 474 (491)
T ss_dssp SSSSTHHHHHHHHHHHHHHHHHGGGGGGS-STTHHHHHTHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999998888754 66777877777666666655554443
No 11
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.21 E-value=1.2e-09 Score=108.18 Aligned_cols=165 Identities=10% Similarity=0.021 Sum_probs=114.8
Q ss_pred HHHhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHhhhhcccCCCCCC
Q 016902 88 LSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQD 167 (380)
Q Consensus 88 i~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~l~~g~lsD~~~GR~~~i~i~~~l~~lg~~~l~l~~~~~~l~~~~~ 167 (380)
...+..+++.+..+.+............+...++.++++++.||+ |||+.++.+..+..++++.+....... .+
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~-Grr~~~~~~~~~~~~~~~~l~~~~~~~---~~-- 368 (491)
T 4gc0_A 295 VVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKF-GRKPLQIIGALGMAIGMFSLGTAFYTQ---AP-- 368 (491)
T ss_dssp HHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CSHHHHHHHHHHHHHHHHHHHHHHHTT---CC--
T ss_pred HHHhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhh-cCcchhccchHHHHHHHHHHHHHHhcc---cc--
Confidence 334445667778888887777777777788888999999999998 999999999888888777665542200 00
Q ss_pred cccccccccCCCCCCcchhHHHHHHHHHHHHHhccchhhhhhhHhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHH
Q 016902 168 NCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFT 247 (380)
Q Consensus 168 ~c~~~~~~~~~c~~~~~~~~~~l~~~l~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~iG~~i~~~ 247 (380)
.....+.+..+..+++ .+..+....+.+|.||.+. |+++.++.+....+|+.+++.
T Consensus 369 -----------------~~~~~~~~~~~~~~~~-~~~~~~~~~~~~E~fPt~~------R~~~~g~~~~~~~~~~~i~~~ 424 (491)
T 4gc0_A 369 -----------------GIVALLSMLFYVAAFA-MSWGPVCWVLLSEIFPNAI------RGKALAIAVAAQWLANYFVSW 424 (491)
T ss_dssp -----------------HHHHHHHHHHHHHHHH-TTTTHHHHHHHHHSSCTTT------HHHHHHHHHHHHHHHHHHHHT
T ss_pred -----------------hHHHHHHHHHHHHHHH-hHHHHHHHHHHHHhCCHhH------HHHHHHHHHHHHHHHHHHHHH
Confidence 1122222222223333 3344667789999999998 999999988888888888887
Q ss_pred HHHHhhh------cchhhHHHHHHHHHHHHHHHHHHhhccc
Q 016902 248 LVVYIQM------EHGWGSAFGALAIAMGISNMLFFIGTPL 282 (380)
Q Consensus 248 i~~~i~~------~~gw~~~f~i~~~~~~~~~i~~~~~~~~ 282 (380)
+..++.+ ..++.+.|++.+++.+++.++.++..|+
T Consensus 425 ~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PE 465 (491)
T 4gc0_A 425 TFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPE 465 (491)
T ss_dssp HHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecC
Confidence 7766543 2345667787777777777666555554
No 12
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.18 E-value=2e-12 Score=126.69 Aligned_cols=169 Identities=10% Similarity=-0.125 Sum_probs=109.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHH
Q 016902 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG 149 (380)
Q Consensus 70 ~~~~i~~~~~~~~~~~~~i~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~l~~g~lsD~~~GR~~~i~i~~~l~~lg 149 (380)
..+......++..+.+..+.+.++.|+++++|++..+.+.+.+.+.++..++.+++|+++||+ |||++++++.+++.++
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~-Grr~~l~~~~~~~~~~ 86 (417)
T 2cfq_A 8 NFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKL-GLRKYLLWIITGMLVM 86 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTS-TTCCHHHHHHHHTTSC
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHH
Confidence 445555555555566666677899999999999999999999999999999999999999998 9999999888776543
Q ss_pred HHHHHhhhhcccCCCCCCcccccccccCCCCCCcchhH-HHHHHHHHHHHHhccchhhhhhhHhhccCCCCCchhhhhhh
Q 016902 150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQM-LYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLD 228 (380)
Q Consensus 150 ~~~l~l~~~~~~l~~~~~~c~~~~~~~~~c~~~~~~~~-~~l~~~l~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~ 228 (380)
...+...... ... ..++.++.+.+++.|...+...+...+..++. .++++
T Consensus 87 ~~~~~~~~~~-------------------------~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~----~~~~~ 137 (417)
T 2cfq_A 87 FAPFFIFIFG-------------------------PLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKV----SRRSN 137 (417)
T ss_dssp HHHHHHHTHH-------------------------HHHHTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHH----HHHHT
T ss_pred HHHHHHHHHH-------------------------HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHh----hhhcc
Confidence 2222111000 000 01122333333333333333333333332211 11255
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHH
Q 016902 229 RFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAM 269 (380)
Q Consensus 229 ~~~~~~~~~~~iG~~i~~~i~~~i~~~~gw~~~f~i~~~~~ 269 (380)
..++..+...++|..++|.+++++.+ .+|++.|++.++..
T Consensus 138 ~~~g~~~~~~~~g~~~~~~l~~~l~~-~~~~~~f~~~~~~~ 177 (417)
T 2cfq_A 138 FEFGRARMFGCVGWALGASIVGIMFT-INNQFVFWLGSGCA 177 (417)
T ss_dssp CCHHHHSSSTTTHHHHHHHHHHHHHH-HCSHHHHTTTTTTT
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHH-hchhHHHHHHHHHH
Confidence 55666666778899999999998876 57999988765553
No 13
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=98.88 E-value=6.3e-10 Score=106.48 Aligned_cols=164 Identities=12% Similarity=-0.098 Sum_probs=121.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHH-HH
Q 016902 69 IAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTI-YL 147 (380)
Q Consensus 69 ~~~~~i~~~~~~~~~~~~~i~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~l~~g~lsD~~~GR~~~i~i~~~l-~~ 147 (380)
+..+...+..++.....+++..+++.|+++.+|++..+++.+.....++..++.++.++++||+ || .+.++..+ ..
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~-~~--~~~~~~~~~~~ 275 (375)
T 2gfp_A 199 SGFNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRF-ST--LMWQSVICCLL 275 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHH-HH--HHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH--HHHHHHHHHHH
Confidence 4456666667777777778888888899888999999999999988899999999999999997 77 22333322 22
Q ss_pred HHHHHHHhhhhcccCCCCCCcccccccccCCCCCCcchhHHHHHHHHHHHHHhccchhhhhhhHhhccCCCCCchhhhhh
Q 016902 148 AGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHL 227 (380)
Q Consensus 148 lg~~~l~l~~~~~~l~~~~~~c~~~~~~~~~c~~~~~~~~~~l~~~l~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r 227 (380)
++..++..... + ..+...+++..++.+++.+...+....+..|.+| ++ |
T Consensus 276 ~~~~~~~~~~~-----~-------------------~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~------~ 324 (375)
T 2gfp_A 276 AGLLMWIPDWF-----G-------------------VMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FL------A 324 (375)
T ss_dssp TSSSSSHHHHH-----H-------------------HHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HH------H
T ss_pred HHHHHHHHhhh-----c-------------------cccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cc------c
Confidence 22221111100 0 0244556677778889999989999999999987 55 8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHH
Q 016902 228 DRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALA 266 (380)
Q Consensus 228 ~~~~~~~~~~~~iG~~i~~~i~~~i~~~~gw~~~f~i~~ 266 (380)
++.+++++...++|..+++.+.+++.+..+|...+.+..
T Consensus 325 g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~ 363 (375)
T 2gfp_A 325 GTAGALVGGLQNIGSGVLASLSAMLPQTGQGSLGLLMTL 363 (375)
T ss_dssp HHHHHHHHHHHHHHHHCCSTTCTHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHHH
Confidence 999999999999999999999999888777877776543
No 14
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=98.28 E-value=4.4e-07 Score=90.65 Aligned_cols=90 Identities=16% Similarity=0.143 Sum_probs=67.2
Q ss_pred hHHHHHHHHHHHHHhccchhhhhhhHhhccCCCCCchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhcc--hh-----
Q 016902 186 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEH--GW----- 258 (380)
Q Consensus 186 ~~~~l~~~l~l~g~g~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~iG~~i~~~i~~~i~~~~--gw----- 258 (380)
+...++++.++.++|.+...+....+..|.+|++. |++.+++++....+|..+++.+.+++.+.. +|
T Consensus 404 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~~~~~~~~~ 477 (524)
T 2xut_A 404 SIFWQILPYALLTFGEVLVSATGLEFAYSQAPKAM------KGTIMSFWTLSVTVGNLWVLLANVSVKSPTVTEQIVQTG 477 (524)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHTTTHHHHCCTTC------CTTTHHHHGGGHHHHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHH------HhHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccc
Confidence 34456677788999999999999999999999888 999999999999999999999999987643 23
Q ss_pred ----hHHHHHHHHHHHHHHHHHHhhcc
Q 016902 259 ----GSAFGALAIAMGISNMLFFIGTP 281 (380)
Q Consensus 259 ----~~~f~i~~~~~~~~~i~~~~~~~ 281 (380)
...|++.+++.+++.++++...+
T Consensus 478 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 504 (524)
T 2xut_A 478 MSVTAFQMFFFAGFAILAAIVFALYAR 504 (524)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHC----
T ss_pred ccccccHHHHHHHHHHHHHHHHHHHHH
Confidence 22366666665555555444333
No 15
>4aw6_A CAAX prenyl protease 1 homolog; hydrolase, M48 peptidase, integral membrane protein, prelami processing, ageing, progeria; HET: PC1; 3.40A {Homo sapiens} PDB: 2ypt_A
Probab=35.15 E-value=2.5e+02 Score=27.27 Aligned_cols=59 Identities=10% Similarity=0.031 Sum_probs=29.1
Q ss_pred HHHhcCCCHHHHHHHHHHHHHHHHHHH-----HHHH--HHHHhhcchhHHHHHHHHHHHHHHHHHHh
Q 016902 96 MFYVMHKSFADSSNAVNNFLGISQASS-----VLGG--FLADAYLGRYWTIAIFTTIYLAGLTGITL 155 (380)
Q Consensus 96 l~~~~~~s~~~a~~~~~~~~~~~~~~~-----l~~g--~lsD~~~GR~~~i~i~~~l~~lg~~~l~l 155 (380)
+.+.+|++....+..+.-..-...++. ++.+ ++.++. |+++.+....+...+..++..+
T Consensus 149 le~~~Gfnk~t~~~f~~D~~k~~~l~~vi~~pl~~~~~~ii~~~-g~~~wl~~w~~~~~~~l~~~~i 214 (482)
T 4aw6_A 149 IEEKHGFNQQTLGFFMKDAIKKFVVTQCILLPVSSLLLYIIKIG-GDYFFIYAWLFTLVVSLVLVTI 214 (482)
T ss_dssp HHHHTTCBCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-CSSHHHHHHHHHHHHHHHHHHH
T ss_pred ehhhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CchhHHHHHHHHHHHHHHHHHH
Confidence 556789886554433322222222222 2222 345554 8887766655554444444333
Done!