BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016903
(380 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2J9F|A Chain A, Human Branched-Chain Alpha-Ketoacid Dehydrogenase-
Decarboxylase E1b
pdb|2J9F|C Chain C, Human Branched-Chain Alpha-Ketoacid Dehydrogenase-
Decarboxylase E1b
Length = 400
Score = 377 bits (968), Expect = e-105, Method: Compositional matrix adjust.
Identities = 177/375 (47%), Positives = 242/375 (64%)
Query: 1 MRFISESSEERIPCYRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQR 60
+ FI + IP YRV+D GQ S + + +K+Y M L TMD I YE+QR
Sbjct: 20 LEFIQPNVISGIPIYRVMDRQGQIINPSEDPHLPKEKVLKLYKSMTLLNTMDRILYESQR 79
Query: 61 QGRISFYLTTSGEEXXXXXXXXXXKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKAD 120
QGRISFY+T GEE N D V QYRE GVL++R + ++ F QC+GN +D
Sbjct: 80 QGRISFYMTNYGEEGTHVGSAAALDNTDLVFGQYREAGVLMYRDYPLELFMAQCYGNISD 139
Query: 121 YGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEG 180
GKGRQMP+HYG + ++ T+SS +ATQ+P AVGAAYA K + + YFG+G SEG
Sbjct: 140 LGKGRQMPVHYGCKERHFVTISSPLATQIPQAVGAAYAAKRANANRVVICYFGEGAASEG 199
Query: 181 DFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDAL 240
D HA NF+A E P+IF CRNNG+AISTP S+Q+R DG +G YG+ SIRVDGND
Sbjct: 200 DAHAGFNFAATLECPIIFFCRNNGYAISTPTSEQYRGDGIAARGPGYGIMSIRVDGNDVF 259
Query: 241 AIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDDSTKYRPVDEIEWWRTTQDPVTRF 300
A+Y+A AR A+ E +P LIEA+TYR+GHH+TSDDS+ YRPVDE+ +W P++R
Sbjct: 260 AVYNATKEARRRAVAENQPFLIEAMTYRIGHHSTSDDSSAYRPVDEVNYWDKQDHPISRL 319
Query: 301 RKWIESNGWWNGDIESELRSSVRKQILHALQEAEKAEKPPISDLFTDVYDVSPSNLREQE 360
R ++ S GWW+ + E R R++++ A ++AE+ KP + LF+DVY P+ LR+Q+
Sbjct: 320 RHYLLSQGWWDEEQEKAWRKQSRRKVMEAFEQAERKPKPNPNLLFSDVYQEMPAQLRKQQ 379
Query: 361 HSLRETIKKHPQDYP 375
SL ++ + + YP
Sbjct: 380 ESLARHLQTYGEHYP 394
>pdb|1DTW|A Chain A, Human Branched-Chain Alpha-Keto Acid Dehydrogenase
pdb|1OLS|A Chain A, Roles Of His291-Alpha And His146-Beta' In The Reductive
Acylation Reaction Catalyzed By Human Branched-Chain
Alpha-Ketoacid Dehydrogenase
pdb|1OLX|A Chain A, Roles Of His291-alpha And His146-beta' In The Reductive
Acylation Reaction Catalyzed By Human Branched-chain
Alpha-ketoacid Dehydrogenase
pdb|1U5B|A Chain A, Crystal Structure Of The Human Mitochondrial
Branched-Chain Alpha- Ketoacid Dehydrogenase
pdb|1WCI|A Chain A, Reactivity Modulation Of Human Branched-chain Alpha-
Ketoacid Dehydrogenase By An Internal Molecular Switch
pdb|2BEU|A Chain A, Reactivity Modulation Of Human Branched-Chain Alpha-
Ketoacid Dehydrogenase By An Internal Molecular Switch
pdb|2BEV|A Chain A, Reactivity Modulation Of Human Branched-Chain Alpha-
Ketoacid Dehydrogenase By An Internal Molecular Switch
pdb|2BEW|A Chain A, Reactivity Modulation Of Human Branched-Chain Alpha-
Ketoacid Dehydrogenase By An Internal Molecular Switch
Length = 400
Score = 374 bits (960), Expect = e-104, Method: Compositional matrix adjust.
Identities = 176/375 (46%), Positives = 241/375 (64%)
Query: 1 MRFISESSEERIPCYRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQR 60
+ FI + IP YRV+D GQ S + + +K+Y M L TMD I YE+QR
Sbjct: 20 LEFIQPNVISGIPIYRVMDRQGQIINPSEDPHLPKEKVLKLYKSMTLLNTMDRILYESQR 79
Query: 61 QGRISFYLTTSGEEXXXXXXXXXXKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKAD 120
QGRISFY+T GEE N D V QYRE GVL++R + ++ F QC+GN +D
Sbjct: 80 QGRISFYMTNYGEEGTHVGSAAALDNTDLVFGQYREAGVLMYRDYPLELFMAQCYGNISD 139
Query: 121 YGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEG 180
GKGRQMP+HYG + ++ T+SS +ATQ+P AVGAAYA K + + YFG+G SEG
Sbjct: 140 LGKGRQMPVHYGCKERHFVTISSPLATQIPQAVGAAYAAKRANANRVVICYFGEGAASEG 199
Query: 181 DFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDAL 240
D HA NF+A E P+IF CRNNG+AISTP S+Q+R DG +G YG+ SIRVDGND
Sbjct: 200 DAHAGFNFAATLECPIIFFCRNNGYAISTPTSEQYRGDGIAARGPGYGIMSIRVDGNDVF 259
Query: 241 AIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDDSTKYRPVDEIEWWRTTQDPVTRF 300
A+Y+A AR A+ E +P LIEA+TYR+GHH+TSDDS+ YR VDE+ +W P++R
Sbjct: 260 AVYNATKEARRRAVAENQPFLIEAMTYRIGHHSTSDDSSAYRSVDEVNYWDKQDHPISRL 319
Query: 301 RKWIESNGWWNGDIESELRSSVRKQILHALQEAEKAEKPPISDLFTDVYDVSPSNLREQE 360
R ++ S GWW+ + E R R++++ A ++AE+ KP + LF+DVY P+ LR+Q+
Sbjct: 320 RHYLLSQGWWDEEQEKAWRKQSRRKVMEAFEQAERKPKPNPNLLFSDVYQEMPAQLRKQQ 379
Query: 361 HSLRETIKKHPQDYP 375
SL ++ + + YP
Sbjct: 380 ESLARHLQTYGEHYP 394
>pdb|1X7Y|A Chain A, Crystal Structure Of The Human Mitochondrial
Branched-chain Alpha- Ketoacid Dehydrogenase
Length = 400
Score = 374 bits (959), Expect = e-104, Method: Compositional matrix adjust.
Identities = 176/375 (46%), Positives = 240/375 (64%)
Query: 1 MRFISESSEERIPCYRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQR 60
+ FI + IP YRV+D GQ S + + +K+Y M L TMD I YE+QR
Sbjct: 20 LEFIQPNVISGIPIYRVMDRQGQIINPSEDPHLPKEKVLKLYKSMTLLNTMDRILYESQR 79
Query: 61 QGRISFYLTTSGEEXXXXXXXXXXKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKAD 120
QGRISFY+T GEE N D V QYRE GVL++R + ++ F QC+GN +D
Sbjct: 80 QGRISFYMTNYGEEGTHVGSAAALDNTDLVFGQYREAGVLMYRDYPLELFMAQCYGNISD 139
Query: 121 YGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEG 180
GKGRQMP+HYG + ++ T+SS +ATQ+P AVGAAYA K + + YFG+G SEG
Sbjct: 140 LGKGRQMPVHYGCKERHFVTISSPLATQIPQAVGAAYAAKRANANRVVICYFGEGAASEG 199
Query: 181 DFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDAL 240
D HA NF+A E P+IF CRNNG+AISTP S+Q+R DG +G YG+ SIRVDGND
Sbjct: 200 DAHAGFNFAATLECPIIFFCRNNGYAISTPTSEQYRGDGIAARGPGYGIMSIRVDGNDVF 259
Query: 241 AIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDDSTKYRPVDEIEWWRTTQDPVTRF 300
A+Y+A AR A+ E +P LIEA+TYR+GHH TSDDS+ YR VDE+ +W P++R
Sbjct: 260 AVYNATKEARRRAVAENQPFLIEAMTYRIGHHNTSDDSSAYRSVDEVNYWDKQDHPISRL 319
Query: 301 RKWIESNGWWNGDIESELRSSVRKQILHALQEAEKAEKPPISDLFTDVYDVSPSNLREQE 360
R ++ S GWW+ + E R R++++ A ++AE+ KP + LF+DVY P+ LR+Q+
Sbjct: 320 RHYLLSQGWWDEEQEKAWRKQSRRKVMEAFEQAERKPKPNPNLLFSDVYQEMPAQLRKQQ 379
Query: 361 HSLRETIKKHPQDYP 375
SL ++ + + YP
Sbjct: 380 ESLARHLQTYGEHYP 394
>pdb|1X80|A Chain A, Crystal Structure Of The Human Mitochondrial
Branched-chain Alpha- Ketoacid Dehydrogenase
Length = 400
Score = 373 bits (958), Expect = e-104, Method: Compositional matrix adjust.
Identities = 176/375 (46%), Positives = 240/375 (64%)
Query: 1 MRFISESSEERIPCYRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQR 60
+ FI + IP YRV+D GQ S + + +K+Y M L TMD I YE+QR
Sbjct: 20 LEFIQPNVISGIPIYRVMDRQGQIINPSEDPHLPKEKVLKLYKSMTLLNTMDRILYESQR 79
Query: 61 QGRISFYLTTSGEEXXXXXXXXXXKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKAD 120
QGRISFY+T GEE N D V QYRE GVL++R + ++ F QC+GN +D
Sbjct: 80 QGRISFYMTNYGEEGTHVGSAAALDNTDLVFGQYREAGVLMYRDYPLELFMAQCYGNISD 139
Query: 121 YGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEG 180
GKGRQMP+HYG + ++ T+SS +ATQ+P AVGAAYA K + + YFG+G SEG
Sbjct: 140 LGKGRQMPVHYGCKERHFVTISSPLATQIPQAVGAAYAAKRANANRVVICYFGEGAASEG 199
Query: 181 DFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDAL 240
D HA NF+A E P+IF CRNNG+AISTP S+Q+R DG +G YG+ SIRVDGND
Sbjct: 200 DAHAGFNFAATLECPIIFFCRNNGYAISTPTSEQYRGDGIAARGPGYGIMSIRVDGNDVF 259
Query: 241 AIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDDSTKYRPVDEIEWWRTTQDPVTRF 300
A+Y+A AR A+ E +P LIEA+TYR+GHH TSDDS+ YR VDE+ +W P++R
Sbjct: 260 AVYNATKEARRRAVAENQPFLIEAMTYRIGHHXTSDDSSAYRSVDEVNYWDKQDHPISRL 319
Query: 301 RKWIESNGWWNGDIESELRSSVRKQILHALQEAEKAEKPPISDLFTDVYDVSPSNLREQE 360
R ++ S GWW+ + E R R++++ A ++AE+ KP + LF+DVY P+ LR+Q+
Sbjct: 320 RHYLLSQGWWDEEQEKAWRKQSRRKVMEAFEQAERKPKPNPNLLFSDVYQEMPAQLRKQQ 379
Query: 361 HSLRETIKKHPQDYP 375
SL ++ + + YP
Sbjct: 380 ESLARHLQTYGEHYP 394
>pdb|1X7W|A Chain A, Crystal Structure Of The Human Mitochondrial
Branched-Chain Alpha- Ketoacid Dehydrogenase
Length = 400
Score = 373 bits (958), Expect = e-104, Method: Compositional matrix adjust.
Identities = 176/375 (46%), Positives = 240/375 (64%)
Query: 1 MRFISESSEERIPCYRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQR 60
+ FI + IP YRV+D GQ S + + +K+Y M L TMD I YE+QR
Sbjct: 20 LEFIQPNVISGIPIYRVMDRQGQIINPSEDPHLPKEKVLKLYKSMTLLNTMDRILYESQR 79
Query: 61 QGRISFYLTTSGEEXXXXXXXXXXKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKAD 120
QGRISFY+T GEE N D V QYRE GVL++R + ++ F QC+GN +D
Sbjct: 80 QGRISFYMTNYGEEGTHVGSAAALDNTDLVFGQYREAGVLMYRDYPLELFMAQCYGNISD 139
Query: 121 YGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEG 180
GKGRQMP+HYG + ++ T+SS +ATQ+P AVGAAYA K + + YFG+G SEG
Sbjct: 140 LGKGRQMPVHYGCKERHFVTISSPLATQIPQAVGAAYAAKRANANRVVICYFGEGAASEG 199
Query: 181 DFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDAL 240
D HA NF+A E P+IF CRNNG+AISTP S+Q+R DG +G YG+ SIRVDGND
Sbjct: 200 DAHAGFNFAATLECPIIFFCRNNGYAISTPTSEQYRGDGIAARGPGYGIMSIRVDGNDVF 259
Query: 241 AIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDDSTKYRPVDEIEWWRTTQDPVTRF 300
A+Y+A AR A+ E +P LIEA+TYR+GHH TSDDS+ YR VDE+ +W P++R
Sbjct: 260 AVYNATKEARRRAVAENQPFLIEAMTYRIGHHQTSDDSSAYRSVDEVNYWDKQDHPISRL 319
Query: 301 RKWIESNGWWNGDIESELRSSVRKQILHALQEAEKAEKPPISDLFTDVYDVSPSNLREQE 360
R ++ S GWW+ + E R R++++ A ++AE+ KP + LF+DVY P+ LR+Q+
Sbjct: 320 RHYLLSQGWWDEEQEKAWRKQSRRKVMEAFEQAERKPKPNPNLLFSDVYQEMPAQLRKQQ 379
Query: 361 HSLRETIKKHPQDYP 375
SL ++ + + YP
Sbjct: 380 ESLARHLQTYGEHYP 394
>pdb|2BFF|A Chain A, Reactivity Modulation Of Human Branched-Chain Alpha-
Ketoacid Dehydrogenase By An Internal Molecular Switch
Length = 400
Score = 373 bits (958), Expect = e-104, Method: Compositional matrix adjust.
Identities = 176/375 (46%), Positives = 241/375 (64%)
Query: 1 MRFISESSEERIPCYRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQR 60
+ FI + IP YRV+D GQ S + + +K+Y M L TMD I YE+QR
Sbjct: 20 LEFIQPNVISGIPIYRVMDRQGQIINPSEDPHLPKEKVLKLYKSMTLLNTMDRILYESQR 79
Query: 61 QGRISFYLTTSGEEXXXXXXXXXXKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKAD 120
QGRISFY+T GEE N D V QYRE GVL++R + ++ F QC+GN +D
Sbjct: 80 QGRISFYMTNYGEEGTHVGSAAALDNTDLVFGQYREAGVLMYRDYPLELFMAQCYGNISD 139
Query: 121 YGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEG 180
GKGRQMP+HYG + ++ T+SS +ATQ+P AVGAAYA K + + YFG+G SEG
Sbjct: 140 LGKGRQMPVHYGCKERHFVTISSPLATQIPQAVGAAYAAKRANANRVVICYFGEGAASEG 199
Query: 181 DFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDAL 240
D HA NF+A E P+IF CRNNG+AISTP S+Q+R DG +G YG+ SIRVDGND
Sbjct: 200 DAHAGFNFAATLECPIIFFCRNNGYAISTPTSEQYRGDGIAARGPGYGIMSIRVDGNDVF 259
Query: 241 AIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDDSTKYRPVDEIEWWRTTQDPVTRF 300
A+Y+A AR A+ E +P LIEA+TYR+GHH+TSDDS+ YR VDE+ +W P++R
Sbjct: 260 AVYNATKEARRRAVAENQPFLIEAMTYRIGHHSTSDDSSAYRSVDEVGYWDKQDHPISRL 319
Query: 301 RKWIESNGWWNGDIESELRSSVRKQILHALQEAEKAEKPPISDLFTDVYDVSPSNLREQE 360
R ++ S GWW+ + E R R++++ A ++AE+ KP + LF+DVY P+ LR+Q+
Sbjct: 320 RHYLLSQGWWDEEQEKAWRKQSRRKVMEAFEQAERKPKPNPNLLFSDVYQEMPAQLRKQQ 379
Query: 361 HSLRETIKKHPQDYP 375
SL ++ + + YP
Sbjct: 380 ESLARHLQTYGEHYP 394
>pdb|1X7X|A Chain A, Crystal Structure Of The Human Mitochondrial
Branched-Chain Alpha- Ketoacid Dehydrogenase
Length = 400
Score = 373 bits (958), Expect = e-104, Method: Compositional matrix adjust.
Identities = 176/375 (46%), Positives = 240/375 (64%)
Query: 1 MRFISESSEERIPCYRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQR 60
+ FI + IP YRV+D GQ S + + +K+Y M L TMD I YE+QR
Sbjct: 20 LEFIQPNVISGIPIYRVMDRQGQIINPSEDPHLPKEKVLKLYKSMTLLNTMDRILYESQR 79
Query: 61 QGRISFYLTTSGEEXXXXXXXXXXKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKAD 120
QGRISFY+T GEE N D V QYRE GVL++R + ++ F QC+GN +D
Sbjct: 80 QGRISFYMTNYGEEGTHVGSAAALDNTDLVFGQYREAGVLMYRDYPLELFMAQCYGNISD 139
Query: 121 YGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEG 180
GKGRQMP+HYG + ++ T+SS +ATQ+P AVGAAYA K + + YFG+G SEG
Sbjct: 140 LGKGRQMPVHYGCKERHFVTISSPLATQIPQAVGAAYAAKRANANRVVICYFGEGAASEG 199
Query: 181 DFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDAL 240
D HA NF+A E P+IF CRNNG+AISTP S+Q+R DG +G YG+ SIRVDGND
Sbjct: 200 DAHAGFNFAATLECPIIFFCRNNGYAISTPTSEQYRGDGIAARGPGYGIMSIRVDGNDVF 259
Query: 241 AIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDDSTKYRPVDEIEWWRTTQDPVTRF 300
A+Y+A AR A+ E +P LIEA+TYR+GHH TSDDS+ YR VDE+ +W P++R
Sbjct: 260 AVYNATKEARRRAVAENQPFLIEAMTYRIGHHETSDDSSAYRSVDEVNYWDKQDHPISRL 319
Query: 301 RKWIESNGWWNGDIESELRSSVRKQILHALQEAEKAEKPPISDLFTDVYDVSPSNLREQE 360
R ++ S GWW+ + E R R++++ A ++AE+ KP + LF+DVY P+ LR+Q+
Sbjct: 320 RHYLLSQGWWDEEQEKAWRKQSRRKVMEAFEQAERKPKPNPNLLFSDVYQEMPAQLRKQQ 379
Query: 361 HSLRETIKKHPQDYP 375
SL ++ + + YP
Sbjct: 380 ESLARHLQTYGEHYP 394
>pdb|1X7Z|A Chain A, Crystal Structure Of The Human Mitochondrial
Branched-Chain Alpha- Ketoacid Dehydrogenase
Length = 400
Score = 373 bits (957), Expect = e-103, Method: Compositional matrix adjust.
Identities = 176/375 (46%), Positives = 240/375 (64%)
Query: 1 MRFISESSEERIPCYRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQR 60
+ FI + IP YRV+D GQ S + + +K+Y M L TMD I YE+QR
Sbjct: 20 LEFIQPNVISGIPIYRVMDRQGQIINPSEDPHLPKEKVLKLYKSMTLLNTMDRILYESQR 79
Query: 61 QGRISFYLTTSGEEXXXXXXXXXXKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKAD 120
QGRISFY+T GEE N D V QYRE GVL++R + ++ F QC+GN +D
Sbjct: 80 QGRISFYMTNYGEEGTHVGSAAALDNTDLVFGQYREAGVLMYRDYPLELFMAQCYGNISD 139
Query: 121 YGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEG 180
GKGRQMP+HYG + ++ T+SS +ATQ+P AVGAAYA K + + YFG+G SEG
Sbjct: 140 LGKGRQMPVHYGCKERHFVTISSPLATQIPQAVGAAYAAKRANANRVVICYFGEGAASEG 199
Query: 181 DFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDAL 240
D HA NF+A E P+IF CRNNG+AISTP S+Q+R DG +G YG+ SIRVDGND
Sbjct: 200 DAHAGFNFAATLECPIIFFCRNNGYAISTPTSEQYRGDGIAARGPGYGIMSIRVDGNDVF 259
Query: 241 AIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDDSTKYRPVDEIEWWRTTQDPVTRF 300
A+Y+A AR A+ E +P LIEA+TYR+GHH TSDDS+ YR VDE+ +W P++R
Sbjct: 260 AVYNATKEARRRAVAENQPFLIEAMTYRIGHHDTSDDSSAYRSVDEVNYWDKQDHPISRL 319
Query: 301 RKWIESNGWWNGDIESELRSSVRKQILHALQEAEKAEKPPISDLFTDVYDVSPSNLREQE 360
R ++ S GWW+ + E R R++++ A ++AE+ KP + LF+DVY P+ LR+Q+
Sbjct: 320 RHYLLSQGWWDEEQEKAWRKQSRRKVMEAFEQAERKPKPNPNLLFSDVYQEMPAQLRKQQ 379
Query: 361 HSLRETIKKHPQDYP 375
SL ++ + + YP
Sbjct: 380 ESLARHLQTYGEHYP 394
>pdb|1OLU|A Chain A, Roles Of His291-Alpha And His146-Beta' In The Reductive
Acylation Reaction Catalyzed By Human Branched-Chain
Alpha-Ketoacid Dehydrogenase
pdb|1V1R|A Chain A, Crosstalk Between Cofactor Binding And The Phosphorylation
Loop Conformation In The Bckd Machine
Length = 400
Score = 370 bits (950), Expect = e-103, Method: Compositional matrix adjust.
Identities = 175/375 (46%), Positives = 240/375 (64%)
Query: 1 MRFISESSEERIPCYRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQR 60
+ FI + IP YRV+D GQ S + + +K+Y M L TMD I YE+QR
Sbjct: 20 LEFIQPNVISGIPIYRVMDRQGQIINPSEDPHLPKEKVLKLYKSMTLLNTMDRILYESQR 79
Query: 61 QGRISFYLTTSGEEXXXXXXXXXXKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKAD 120
QGRISFY+T GEE N D V QYRE GVL++R + ++ F QC+GN +D
Sbjct: 80 QGRISFYMTNYGEEGTHVGSAAALDNTDLVFGQYREAGVLMYRDYPLELFMAQCYGNISD 139
Query: 121 YGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEG 180
GKGRQMP+HYG + ++ T+SS +ATQ+P AVGAAYA K + + YFG+G SEG
Sbjct: 140 LGKGRQMPVHYGCKERHFVTISSPLATQIPQAVGAAYAAKRANANRVVICYFGEGAASEG 199
Query: 181 DFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDAL 240
D HA NF+A E P+IF CRNNG+AISTP S+Q+R DG +G YG+ SIRVDGND
Sbjct: 200 DAHAGFNFAATLECPIIFFCRNNGYAISTPTSEQYRGDGIAARGPGYGIMSIRVDGNDVF 259
Query: 241 AIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDDSTKYRPVDEIEWWRTTQDPVTRF 300
A+Y+A AR A+ E +P LIEA+TYR+GH +TSDDS+ YR VDE+ +W P++R
Sbjct: 260 AVYNATKEARRRAVAENQPFLIEAMTYRIGHASTSDDSSAYRSVDEVNYWDKQDHPISRL 319
Query: 301 RKWIESNGWWNGDIESELRSSVRKQILHALQEAEKAEKPPISDLFTDVYDVSPSNLREQE 360
R ++ S GWW+ + E R R++++ A ++AE+ KP + LF+DVY P+ LR+Q+
Sbjct: 320 RHYLLSQGWWDEEQEKAWRKQSRRKVMEAFEQAERKPKPNPNLLFSDVYQEMPAQLRKQQ 379
Query: 361 HSLRETIKKHPQDYP 375
SL ++ + + YP
Sbjct: 380 ESLARHLQTYGEHYP 394
>pdb|1V16|A Chain A, Crosstalk Between Cofactor Binding And The Phosphorylation
Loop Conformation In The Bckd Machine
Length = 400
Score = 369 bits (947), Expect = e-102, Method: Compositional matrix adjust.
Identities = 174/375 (46%), Positives = 240/375 (64%)
Query: 1 MRFISESSEERIPCYRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQR 60
+ FI + IP YRV+D GQ S + + +K+Y M L TMD I YE+QR
Sbjct: 20 LEFIQPNVISGIPIYRVMDRQGQIINPSEDPHLPKEKVLKLYKSMTLLNTMDRILYESQR 79
Query: 61 QGRISFYLTTSGEEXXXXXXXXXXKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKAD 120
QGRISFY+T GEE N D V QYRE GVL++R + ++ F QC+GN +D
Sbjct: 80 QGRISFYMTNYGEEGTHVGSAAALDNTDLVFGQYREAGVLMYRDYPLELFMAQCYGNISD 139
Query: 121 YGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEG 180
GKGRQMP+HYG + ++ T+SS +ATQ+P AVGAAYA K + + YFG+G SEG
Sbjct: 140 LGKGRQMPVHYGCKERHFVTISSPLATQIPQAVGAAYAAKRANANRVVICYFGEGAASEG 199
Query: 181 DFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDAL 240
D HA NF+A E P+IF CRNNG+AISTP S+Q+R DG +G YG+ SIRVDGND
Sbjct: 200 DAHAGFNFAATLECPIIFFCRNNGYAISTPTSEQYRGDGIAARGPGYGIMSIRVDGNDVF 259
Query: 241 AIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDDSTKYRPVDEIEWWRTTQDPVTRF 300
A+Y+A AR A+ E +P LIEA+TYR+GH +TSDDS+ +R VDE+ +W P++R
Sbjct: 260 AVYNATKEARRRAVAENQPFLIEAMTYRIGHASTSDDSSAFRSVDEVNYWDKQDHPISRL 319
Query: 301 RKWIESNGWWNGDIESELRSSVRKQILHALQEAEKAEKPPISDLFTDVYDVSPSNLREQE 360
R ++ S GWW+ + E R R++++ A ++AE+ KP + LF+DVY P+ LR+Q+
Sbjct: 320 RHYLLSQGWWDEEQEKAWRKQSRRKVMEAFEQAERKPKPNPNLLFSDVYQEMPAQLRKQQ 379
Query: 361 HSLRETIKKHPQDYP 375
SL ++ + + YP
Sbjct: 380 ESLARHLQTYGEHYP 394
>pdb|2BFC|A Chain A, Reactivity Modulation Of Human Branched-Chain Alpha-
Ketoacid Dehydrogenase By An Internal Molecular Switch
Length = 400
Score = 367 bits (943), Expect = e-102, Method: Compositional matrix adjust.
Identities = 173/375 (46%), Positives = 240/375 (64%)
Query: 1 MRFISESSEERIPCYRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQR 60
+ FI + IP YRV+D GQ S + + +K+Y M L TMD I YE+QR
Sbjct: 20 LEFIQPNVISGIPIYRVMDRQGQIINPSEDPHLPKEKVLKLYKSMTLLNTMDRILYESQR 79
Query: 61 QGRISFYLTTSGEEXXXXXXXXXXKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKAD 120
QGRISFY+T GEE N D V Q+RE GVL++R + ++ F QC+GN +D
Sbjct: 80 QGRISFYMTNYGEEGTHVGSAAALDNTDLVFGQFREAGVLMYRDYPLELFMAQCYGNISD 139
Query: 121 YGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEG 180
GKGRQMP+HYG + ++ T+SS +ATQ+P AVGAAYA K + + YFG+G SEG
Sbjct: 140 LGKGRQMPVHYGCKERHFVTISSPLATQIPQAVGAAYAAKRANANRVVICYFGEGAASEG 199
Query: 181 DFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDAL 240
D HA NF+A E P+IF CRNNG+AISTP S+Q+R DG +G YG+ SIRVDGND
Sbjct: 200 DAHAGFNFAATLECPIIFFCRNNGYAISTPTSEQYRGDGIAARGPGYGIMSIRVDGNDVF 259
Query: 241 AIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDDSTKYRPVDEIEWWRTTQDPVTRF 300
A+Y+A AR A+ E +P LIEA+TYR+GH +TSDDS+ +R VDE+ +W P++R
Sbjct: 260 AVYNATKEARRRAVAENQPFLIEAMTYRIGHASTSDDSSAFRSVDEVNYWDKQDHPISRL 319
Query: 301 RKWIESNGWWNGDIESELRSSVRKQILHALQEAEKAEKPPISDLFTDVYDVSPSNLREQE 360
R ++ S GWW+ + E R R++++ A ++AE+ KP + LF+DVY P+ LR+Q+
Sbjct: 320 RHYLLSQGWWDEEQEKAWRKQSRRKVMEAFEQAERKPKPNPNLLFSDVYQEMPAQLRKQQ 379
Query: 361 HSLRETIKKHPQDYP 375
SL ++ + + YP
Sbjct: 380 ESLARHLQTYGEHYP 394
>pdb|1V11|A Chain A, Crosstalk Between Cofactor Binding And The Phosphorylation
Loop Conformation In The Bckd Machine
Length = 400
Score = 367 bits (943), Expect = e-102, Method: Compositional matrix adjust.
Identities = 174/375 (46%), Positives = 239/375 (63%)
Query: 1 MRFISESSEERIPCYRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQR 60
+ FI + IP YRV+D GQ S + + +K+Y M L TMD I YE+QR
Sbjct: 20 LEFIQPNVISGIPIYRVMDRQGQIINPSEDPHLPKEKVLKLYKSMTLLNTMDRILYESQR 79
Query: 61 QGRISFYLTTSGEEXXXXXXXXXXKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKAD 120
QGRISFY+T GEE N D V QYRE GVL++R + ++ F QC+GN +D
Sbjct: 80 QGRISFYMTNYGEEGTHVGSAAALDNTDLVFGQYREAGVLMYRDYPLELFMAQCYGNISD 139
Query: 121 YGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEG 180
GKGRQMP+HYG + ++ T+SS +ATQ+P AVGAAYA K + + YFG+G SEG
Sbjct: 140 LGKGRQMPVHYGCKERHFVTISSPLATQIPQAVGAAYAAKRANANRVVICYFGEGAASEG 199
Query: 181 DFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDAL 240
D HA NF+A E P+IF CRNNG+AISTP S+Q+R DG +G YG+ SIRVDGND
Sbjct: 200 DAHAGFNFAATLECPIIFFCRNNGYAISTPTSEQYRGDGIAARGPGYGIMSIRVDGNDVF 259
Query: 241 AIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDDSTKYRPVDEIEWWRTTQDPVTRF 300
A+Y+A AR A+ E +P LIEA+TY +GH +TSDDS+ YR VDE+ +W P++R
Sbjct: 260 AVYNATKEARRRAVAENQPFLIEAMTYAIGHASTSDDSSAYRSVDEVNYWDKQDHPISRL 319
Query: 301 RKWIESNGWWNGDIESELRSSVRKQILHALQEAEKAEKPPISDLFTDVYDVSPSNLREQE 360
R ++ S GWW+ + E R R++++ A ++AE+ KP + LF+DVY P+ LR+Q+
Sbjct: 320 RHYLLSQGWWDEEQEKAWRKQSRRKVMEAFEQAERKPKPNPNLLFSDVYQEMPAQLRKQQ 379
Query: 361 HSLRETIKKHPQDYP 375
SL ++ + + YP
Sbjct: 380 ESLARHLQTYGEHYP 394
>pdb|2BFE|A Chain A, Reactivity Modulation Of Human Branched-Chain Alpha-
Ketoacid Dehydrogenase By An Internal Molecular Switch
Length = 400
Score = 367 bits (941), Expect = e-102, Method: Compositional matrix adjust.
Identities = 173/375 (46%), Positives = 239/375 (63%)
Query: 1 MRFISESSEERIPCYRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQR 60
+ FI + IP YRV+D GQ S + + +K+Y M L TMD I YE+QR
Sbjct: 20 LEFIQPNVISGIPIYRVMDRQGQIINPSEDPHLPKEKVLKLYKSMTLLNTMDRILYESQR 79
Query: 61 QGRISFYLTTSGEEXXXXXXXXXXKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKAD 120
QGRISFY+T GEE N D V RE GVL++R + ++ F QC+GN +D
Sbjct: 80 QGRISFYMTNYGEEGTHVGSAAALDNTDLVFGAAREAGVLMYRDYPLELFMAQCYGNISD 139
Query: 121 YGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEG 180
GKGRQMP+HYG + ++ T+SS +ATQ+P AVGAAYA K + + YFG+G SEG
Sbjct: 140 LGKGRQMPVHYGCKERHFVTISSPLATQIPQAVGAAYAAKRANANRVVICYFGEGAASEG 199
Query: 181 DFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDAL 240
D HA NF+A E P+IF CRNNG+AISTP S+Q+R DG +G YG+ SIRVDGND
Sbjct: 200 DAHAGFNFAATLECPIIFFCRNNGYAISTPTSEQYRGDGIAARGPGYGIMSIRVDGNDVF 259
Query: 241 AIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDDSTKYRPVDEIEWWRTTQDPVTRF 300
A+Y+A AR A+ E +P LIEA+TYR+GHH+TSDDS+ +R VDE+ +W P++R
Sbjct: 260 AVYNATKEARRRAVAENQPFLIEAMTYRIGHHSTSDDSSAFRSVDEVNYWDKQDHPISRL 319
Query: 301 RKWIESNGWWNGDIESELRSSVRKQILHALQEAEKAEKPPISDLFTDVYDVSPSNLREQE 360
R ++ S GWW+ + E R R++++ A ++AE+ KP + LF+DVY P+ LR+Q+
Sbjct: 320 RHYLLSQGWWDEEQEKAWRKQSRRKVMEAFEQAERKPKPNPNLLFSDVYQEMPAQLRKQQ 379
Query: 361 HSLRETIKKHPQDYP 375
SL ++ + + YP
Sbjct: 380 ESLARHLQTYGEHYP 394
>pdb|2BFB|A Chain A, Reactivity Modulation Of Human Branched-Chain Alpha-
Ketoacid Dehydrogenase By An Internal Molecular Switch
Length = 400
Score = 366 bits (940), Expect = e-101, Method: Compositional matrix adjust.
Identities = 173/375 (46%), Positives = 239/375 (63%)
Query: 1 MRFISESSEERIPCYRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQR 60
+ FI + IP YRV+D GQ S + + +K+Y M L TMD I YE+QR
Sbjct: 20 LEFIQPNVISGIPIYRVMDRQGQIINPSEDPHLPKEKVLKLYKSMTLLNTMDRILYESQR 79
Query: 61 QGRISFYLTTSGEEXXXXXXXXXXKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKAD 120
QGRISFY+T GEE N D V YRE GVL++R + ++ F QC+GN +D
Sbjct: 80 QGRISFYMTNYGEEGTHVGSAAALDNTDLVFGAYREAGVLMYRDYPLELFMAQCYGNISD 139
Query: 121 YGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEG 180
GKGRQMP+HYG + ++ T+SS +ATQ+P AVGAAYA K + + YFG+G SEG
Sbjct: 140 LGKGRQMPVHYGCKERHFVTISSPLATQIPQAVGAAYAAKRANANRVVICYFGEGAASEG 199
Query: 181 DFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDAL 240
D HA NF+A E P+IF CRNNG+AISTP S+Q+R DG +G YG+ SIRVDGND
Sbjct: 200 DAHAGFNFAATLECPIIFFCRNNGYAISTPTSEQYRGDGIAARGPGYGIMSIRVDGNDVF 259
Query: 241 AIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDDSTKYRPVDEIEWWRTTQDPVTRF 300
A+Y+A AR A+ E +P LIEA+TYR+GH +TSDDS+ +R VDE+ +W P++R
Sbjct: 260 AVYNATKEARRRAVAENQPFLIEAMTYRIGHASTSDDSSAFRSVDEVNYWDKQDHPISRL 319
Query: 301 RKWIESNGWWNGDIESELRSSVRKQILHALQEAEKAEKPPISDLFTDVYDVSPSNLREQE 360
R ++ S GWW+ + E R R++++ A ++AE+ KP + LF+DVY P+ LR+Q+
Sbjct: 320 RHYLLSQGWWDEEQEKAWRKQSRRKVMEAFEQAERKPKPNPNLLFSDVYQEMPAQLRKQQ 379
Query: 361 HSLRETIKKHPQDYP 375
SL ++ + + YP
Sbjct: 380 ESLARHLQTYGEHYP 394
>pdb|1V1M|A Chain A, Crosstalk Between Cofactor Binding And The Phosphorylation
Loop Conformation In The Bckd Machine
Length = 400
Score = 366 bits (939), Expect = e-101, Method: Compositional matrix adjust.
Identities = 173/375 (46%), Positives = 239/375 (63%)
Query: 1 MRFISESSEERIPCYRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQR 60
+ FI + IP YRV+D GQ S + + +K+Y M L TMD I YE+QR
Sbjct: 20 LEFIQPNVISGIPIYRVMDRQGQIINPSEDPHLPKEKVLKLYKSMTLLNTMDRILYESQR 79
Query: 61 QGRISFYLTTSGEEXXXXXXXXXXKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKAD 120
QGRISFY+T GEE N D V QYRE GVL++R + ++ F QC+GN +D
Sbjct: 80 QGRISFYMTNYGEEGTHVGSAAALDNTDLVFGQYREAGVLMYRDYPLELFMAQCYGNISD 139
Query: 121 YGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEG 180
GKGRQMP+HYG + ++ T+SS +ATQ+P AVGAAYA K + + YFG+G SEG
Sbjct: 140 LGKGRQMPVHYGCKERHFVTISSPLATQIPQAVGAAYAAKRANANRVVICYFGEGAASEG 199
Query: 181 DFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDAL 240
D HA NF+A E P+IF CRNNG+AISTP S+Q+R DG +G YG+ SIRVDGND
Sbjct: 200 DAHAGFNFAATLECPIIFFCRNNGYAISTPTSEQYRGDGIAARGPGYGIMSIRVDGNDVF 259
Query: 241 AIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDDSTKYRPVDEIEWWRTTQDPVTRF 300
A+Y+A AR A+ E +P LIEA+TYR+GH +TS DS+ +R VDE+ +W P++R
Sbjct: 260 AVYNATKEARRRAVAENQPFLIEAMTYRIGHASTSADSSAFRSVDEVNYWDKQDHPISRL 319
Query: 301 RKWIESNGWWNGDIESELRSSVRKQILHALQEAEKAEKPPISDLFTDVYDVSPSNLREQE 360
R ++ S GWW+ + E R R++++ A ++AE+ KP + LF+DVY P+ LR+Q+
Sbjct: 320 RHYLLSQGWWDEEQEKAWRKQSRRKVMEAFEQAERKPKPNPNLLFSDVYQEMPAQLRKQQ 379
Query: 361 HSLRETIKKHPQDYP 375
SL ++ + + YP
Sbjct: 380 ESLARHLQTYGEHYP 394
>pdb|2BFD|A Chain A, Reactivity Modulation Of Human Branched-Chain Alpha-
Ketoacid Dehydrogenase By An Internal Molecular Switch
Length = 400
Score = 365 bits (938), Expect = e-101, Method: Compositional matrix adjust.
Identities = 173/375 (46%), Positives = 239/375 (63%)
Query: 1 MRFISESSEERIPCYRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQR 60
+ FI + IP YRV+D GQ S + + +K+Y M L TMD I YE+QR
Sbjct: 20 LEFIQPNVISGIPIYRVMDRQGQIINPSEDPHLPKEKVLKLYKSMTLLNTMDRILYESQR 79
Query: 61 QGRISFYLTTSGEEXXXXXXXXXXKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKAD 120
QGRISFY+T GEE N D V Q RE GVL++R + ++ F QC+GN +D
Sbjct: 80 QGRISFYMTNYGEEGTHVGSAAALDNTDLVFGQAREAGVLMYRDYPLELFMAQCYGNISD 139
Query: 121 YGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEG 180
GKGRQMP+HYG + ++ T+SS +ATQ+P AVGAAYA K + + YFG+G SEG
Sbjct: 140 LGKGRQMPVHYGCKERHFVTISSPLATQIPQAVGAAYAAKRANANRVVICYFGEGAASEG 199
Query: 181 DFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDAL 240
D HA NF+A E P+IF CRNNG+AISTP S+Q+R DG +G YG+ SIRVDGND
Sbjct: 200 DAHAGFNFAATLECPIIFFCRNNGYAISTPTSEQYRGDGIAARGPGYGIMSIRVDGNDVF 259
Query: 241 AIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDDSTKYRPVDEIEWWRTTQDPVTRF 300
A+Y+A AR A+ E +P LIEA+TYR+GH +TSDDS+ +R VDE+ +W P++R
Sbjct: 260 AVYNATKEARRRAVAENQPFLIEAMTYRIGHASTSDDSSAFRSVDEVNYWDKQDHPISRL 319
Query: 301 RKWIESNGWWNGDIESELRSSVRKQILHALQEAEKAEKPPISDLFTDVYDVSPSNLREQE 360
R ++ S GWW+ + E R R++++ A ++AE+ KP + LF+DVY P+ LR+Q+
Sbjct: 320 RHYLLSQGWWDEEQEKAWRKQSRRKVMEAFEQAERKPKPNPNLLFSDVYQEMPAQLRKQQ 379
Query: 361 HSLRETIKKHPQDYP 375
SL ++ + + YP
Sbjct: 380 ESLARHLQTYGEHYP 394
>pdb|1UM9|A Chain A, Branched-chain 2-oxo Acid Dehydrogenase (e1) From Thermus
Thermophilus Hb8 In Apo-form
pdb|1UM9|C Chain C, Branched-chain 2-oxo Acid Dehydrogenase (e1) From Thermus
Thermophilus Hb8 In Apo-form
pdb|1UMB|A Chain A, Branched-Chain 2-Oxo Acid Dehydrogenase (E1) From Thermus
Thermophilus Hb8 In Holo-Form
pdb|1UMB|C Chain C, Branched-Chain 2-Oxo Acid Dehydrogenase (E1) From Thermus
Thermophilus Hb8 In Holo-Form
pdb|1UMC|A Chain A, Branched-Chain 2-Oxo Acid Dehydrogenase (E1) From Thermus
Thermophilus Hb8 With 4-Methylpentanoate
pdb|1UMC|C Chain C, Branched-Chain 2-Oxo Acid Dehydrogenase (E1) From Thermus
Thermophilus Hb8 With 4-Methylpentanoate
pdb|1UMD|A Chain A, Branched-Chain 2-Oxo Acid Dehydrogenase (E1) From Thermus
Thermophilus Hb8 With 4-Methyl-2-Oxopentanoate As An
Intermediate
pdb|1UMD|C Chain C, Branched-Chain 2-Oxo Acid Dehydrogenase (E1) From Thermus
Thermophilus Hb8 With 4-Methyl-2-Oxopentanoate As An
Intermediate
Length = 367
Score = 233 bits (594), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 132/330 (40%), Positives = 189/330 (57%), Gaps = 4/330 (1%)
Query: 40 KMYNDMVTLQTMDTIFYEAQRQGRISFYLTTSGEEXXXXXXXXXXKND-DFVVPQYREPG 98
++Y DM+ + +D + R G+ SF +G E + D+V P YR+ G
Sbjct: 40 RLYRDMLAARMLDERYTILIRTGKTSFIAPAAGHEAAQVAIAHAIRPGFDWVFPYYRDHG 99
Query: 99 VLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYA 158
+ L G ++E Q KAD KGRQMP H GS N+FTV+S IA+ +P A GAA +
Sbjct: 100 LALALGIPLKELLGQMLATKADPNKGRQMPEHPGSKALNFFTVASPIASHVPPAAGAAIS 159
Query: 159 LKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSD 218
+K+ R AV FGDG TSEGD++A +NF+AV AP +FI NN +AIS Q S
Sbjct: 160 MKLLRTGQVAVCTFGDGATSEGDWYAGINFAAVQGAPAVFIAENNFYAISVDYRHQTHSP 219
Query: 219 GAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMA-IGEGRPILIEALTYRVGHHTTSDD 277
K A+G+ VDG D LA Y V A E A GEG P L+E YR G H+++DD
Sbjct: 220 TIADKAHAFGIPGYLVDGMDVLASYYVVKEAVERARRGEG-PSLVELRVYRYGPHSSADD 278
Query: 278 STKYRPVDEIEWWRTTQDPVTRFRKWIESNGWWNGDIESELRSSVRKQILHALQEAEKAE 337
++YRP +E+ +WR +DP+ RFR+++E+ G WN + E ++R +R ++ L+EAE+A
Sbjct: 279 DSRYRPKEEVAFWR-KKDPIPRFRRFLEARGLWNEEWEEDVREEIRAELERGLKEAEEAG 337
Query: 338 KPPISDLFTDVYDVSPSNLREQEHSLRETI 367
P +F DV+ P +L QE L+E +
Sbjct: 338 PVPPEWMFEDVFAEKPWHLLRQEALLKEEL 367
>pdb|3DUF|A Chain A, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DUF|C Chain C, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DUF|E Chain E, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DUF|G Chain G, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DV0|A Chain A, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DV0|C Chain C, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DV0|E Chain E, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DV0|G Chain G, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
Length = 369
Score = 218 bits (555), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 129/363 (35%), Positives = 203/363 (55%), Gaps = 15/363 (4%)
Query: 6 ESSEERIPCYRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRIS 65
E E+ P +++L+++G+ + + ++S+ ++ MV + +D RQGR+
Sbjct: 15 EKVAEQFPTFQILNEEGEVVNEEAMPELSDEQLKELMRRMVYTRILDQRSISLNRQGRLG 74
Query: 66 FYLTTSGEEXXXXXXXXXXKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKADYGKGR 125
FY T+G+E + +DF++P YR+ ++W G + Q F + G
Sbjct: 75 FYAPTAGQEASQIASHFALEKEDFILPGYRDVPQIIWHGLPL----YQAFLFSRGHFHGN 130
Query: 126 QMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAA 185
Q+P N I Q A G A LKM K A A+TY GDGGTS+GDF+
Sbjct: 131 QIP-----EGVNVLPPQIIIGAQYIQAAGVALGLKMRGKKAVAITYTGDGGTSQGDFYEG 185
Query: 186 LNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSA 245
+NF+ +AP IF+ +NN +AISTP+ Q + K A G+ I+VDG D LA+Y+A
Sbjct: 186 INFAGAFKAPAIFVVQNNRFAISTPVEKQTVAKTLAQKAVAAGIPGIQVDGMDPLAVYAA 245
Query: 246 VHAAREMAI-GEGRPILIEALTYRVGHHTTS-DDSTKYRPVD-EIEWWRTTQDPVTRFRK 302
V AARE AI GEG P LIE L +R G HT S DD T+YR + E EW + +DP+ RFRK
Sbjct: 246 VKAARERAINGEG-PTLIETLCFRYGPHTMSGDDPTRYRSKELENEWAK--KDPLVRFRK 302
Query: 303 WIESNGWWNGDIESELRSSVRKQILHALQEAEKAEKPPISDLFTDVYDVSPSNLREQEHS 362
++E+ G W+ + E+ + +++I A+++A++ K ++DL + +++ P NL+EQ
Sbjct: 303 FLEAKGLWSEEEENNVIEQAKEEIKEAIKKADETPKQKVTDLISIMFEELPFNLKEQYEI 362
Query: 363 LRE 365
+E
Sbjct: 363 YKE 365
>pdb|1W85|A Chain A, The Crystal Structure Of Pyruvate Dehydrogenase E1 Bound
To The Peripheral Subunit Binding Domain Of E2
pdb|1W85|C Chain C, The Crystal Structure Of Pyruvate Dehydrogenase E1 Bound
To The Peripheral Subunit Binding Domain Of E2
pdb|1W85|E Chain E, The Crystal Structure Of Pyruvate Dehydrogenase E1 Bound
To The Peripheral Subunit Binding Domain Of E2
pdb|1W85|G Chain G, The Crystal Structure Of Pyruvate Dehydrogenase E1 Bound
To The Peripheral Subunit Binding Domain Of E2
Length = 368
Score = 218 bits (555), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 129/363 (35%), Positives = 203/363 (55%), Gaps = 15/363 (4%)
Query: 6 ESSEERIPCYRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRIS 65
E E+ P +++L+++G+ + + ++S+ ++ MV + +D RQGR+
Sbjct: 14 EKVAEQFPTFQILNEEGEVVNEEAMPELSDEQLKELMRRMVYTRILDQRSISLNRQGRLG 73
Query: 66 FYLTTSGEEXXXXXXXXXXKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKADYGKGR 125
FY T+G+E + +DF++P YR+ ++W G + Q F + G
Sbjct: 74 FYAPTAGQEASQIASHFALEKEDFILPGYRDVPQIIWHGLPL----YQAFLFSRGHFHGN 129
Query: 126 QMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAA 185
Q+P N I Q A G A LKM K A A+TY GDGGTS+GDF+
Sbjct: 130 QIP-----EGVNVLPPQIIIGAQYIQAAGVALGLKMRGKKAVAITYTGDGGTSQGDFYEG 184
Query: 186 LNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSA 245
+NF+ +AP IF+ +NN +AISTP+ Q + K A G+ I+VDG D LA+Y+A
Sbjct: 185 INFAGAFKAPAIFVVQNNRFAISTPVEKQTVAKTLAQKAVAAGIPGIQVDGMDPLAVYAA 244
Query: 246 VHAAREMAI-GEGRPILIEALTYRVGHHTTS-DDSTKYRPVD-EIEWWRTTQDPVTRFRK 302
V AARE AI GEG P LIE L +R G HT S DD T+YR + E EW + +DP+ RFRK
Sbjct: 245 VKAARERAINGEG-PTLIETLCFRYGPHTMSGDDPTRYRSKELENEWAK--KDPLVRFRK 301
Query: 303 WIESNGWWNGDIESELRSSVRKQILHALQEAEKAEKPPISDLFTDVYDVSPSNLREQEHS 362
++E+ G W+ + E+ + +++I A+++A++ K ++DL + +++ P NL+EQ
Sbjct: 302 FLEAKGLWSEEEENNVIEQAKEEIKEAIKKADETPKQKVTDLISIMFEELPFNLKEQYEI 361
Query: 363 LRE 365
+E
Sbjct: 362 YKE 364
>pdb|1W88|A Chain A, The Crystal Structure Of Pyruvate Dehydrogenase E1(D180n,
E183q) Bound To The Peripheral Subunit Binding Domain Of
E2
pdb|1W88|C Chain C, The Crystal Structure Of Pyruvate Dehydrogenase E1(D180n,
E183q) Bound To The Peripheral Subunit Binding Domain Of
E2
pdb|1W88|E Chain E, The Crystal Structure Of Pyruvate Dehydrogenase E1(D180n,
E183q) Bound To The Peripheral Subunit Binding Domain Of
E2
pdb|1W88|G Chain G, The Crystal Structure Of Pyruvate Dehydrogenase E1(D180n,
E183q) Bound To The Peripheral Subunit Binding Domain Of
E2
Length = 368
Score = 216 bits (551), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 128/363 (35%), Positives = 203/363 (55%), Gaps = 15/363 (4%)
Query: 6 ESSEERIPCYRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRIS 65
E E+ P +++L+++G+ + + ++S+ ++ MV + +D RQGR+
Sbjct: 14 EKVAEQFPTFQILNEEGEVVNEEAMPELSDEQLKELMRRMVYTRILDQRSISLNRQGRLG 73
Query: 66 FYLTTSGEEXXXXXXXXXXKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKADYGKGR 125
FY T+G+E + +DF++P YR+ ++W G + Q F + G
Sbjct: 74 FYAPTAGQEASQIASHFALEKEDFILPGYRDVPQIIWHGLPL----YQAFLFSRGHFHGN 129
Query: 126 QMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAA 185
Q+P N I Q A G A LKM K A A+TY GDGGTS+G+F+
Sbjct: 130 QIP-----EGVNVLPPQIIIGAQYIQAAGVALGLKMRGKKAVAITYTGDGGTSQGNFYQG 184
Query: 186 LNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSA 245
+NF+ +AP IF+ +NN +AISTP+ Q + K A G+ I+VDG D LA+Y+A
Sbjct: 185 INFAGAFKAPAIFVVQNNRFAISTPVEKQTVAKTLAQKAVAAGIPGIQVDGMDPLAVYAA 244
Query: 246 VHAAREMAI-GEGRPILIEALTYRVGHHTTS-DDSTKYRPVD-EIEWWRTTQDPVTRFRK 302
V AARE AI GEG P LIE L +R G HT S DD T+YR + E EW + +DP+ RFRK
Sbjct: 245 VKAARERAINGEG-PTLIETLCFRYGPHTMSGDDPTRYRSKELENEWAK--KDPLVRFRK 301
Query: 303 WIESNGWWNGDIESELRSSVRKQILHALQEAEKAEKPPISDLFTDVYDVSPSNLREQEHS 362
++E+ G W+ + E+ + +++I A+++A++ K ++DL + +++ P NL+EQ
Sbjct: 302 FLEAKGLWSEEEENNVIEQAKEEIKEAIKKADETPKQKVTDLISIMFEELPFNLKEQYEI 361
Query: 363 LRE 365
+E
Sbjct: 362 YKE 364
>pdb|3DVA|A Chain A, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DVA|C Chain C, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DVA|E Chain E, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DVA|G Chain G, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
Length = 369
Score = 216 bits (549), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 128/363 (35%), Positives = 202/363 (55%), Gaps = 15/363 (4%)
Query: 6 ESSEERIPCYRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRIS 65
E E+ P +++L+++G+ + + ++S+ ++ MV + +D RQGR+
Sbjct: 15 EKVAEQFPTFQILNEEGEVVNEEAMPELSDEQLKELMRRMVYTRILDQRSISLNRQGRLG 74
Query: 66 FYLTTSGEEXXXXXXXXXXKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKADYGKGR 125
FY T+G+E + +DF++P YR+ ++W G + Q F + G
Sbjct: 75 FYAPTAGQEASQIASHFALEKEDFILPGYRDVPQIIWHGLPL----YQAFLFSRGHFHGN 130
Query: 126 QMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAA 185
Q+P N I Q A G A LKM K A A+TY GDGGTS+GDF+
Sbjct: 131 QIP-----EGVNVLPPQIIIGAQYIQAAGVALGLKMRGKKAVAITYTGDGGTSQGDFYEG 185
Query: 186 LNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSA 245
+NF+ +AP IF+ +NN +A STP+ Q + K A G+ I+VDG D LA+Y+A
Sbjct: 186 INFAGAFKAPAIFVVQNNRFAASTPVEKQTVAKTLAQKAVAAGIPGIQVDGMDPLAVYAA 245
Query: 246 VHAAREMAI-GEGRPILIEALTYRVGHHTTS-DDSTKYRPVD-EIEWWRTTQDPVTRFRK 302
V AARE AI GEG P LIE L +R G HT S DD T+YR + E EW + +DP+ RFRK
Sbjct: 246 VKAARERAINGEG-PTLIETLCFRYGPHTMSGDDPTRYRSKELENEWAK--KDPLVRFRK 302
Query: 303 WIESNGWWNGDIESELRSSVRKQILHALQEAEKAEKPPISDLFTDVYDVSPSNLREQEHS 362
++E+ G W+ + E+ + +++I A+++A++ K ++DL + +++ P NL+EQ
Sbjct: 303 FLEAKGLWSEEEENNVIEQAKEEIKEAIKKADETPKQKVTDLISIMFEELPFNLKEQYEI 362
Query: 363 LRE 365
+E
Sbjct: 363 YKE 365
>pdb|2BP7|A Chain A, New Crystal Form Of The Pseudomonas Putida Branched-Chain
Dehydrogenase (E1)
pdb|2BP7|C Chain C, New Crystal Form Of The Pseudomonas Putida Branched-Chain
Dehydrogenase (E1)
pdb|2BP7|E Chain E, New Crystal Form Of The Pseudomonas Putida Branched-Chain
Dehydrogenase (E1)
pdb|2BP7|G Chain G, New Crystal Form Of The Pseudomonas Putida Branched-Chain
Dehydrogenase (E1)
Length = 410
Score = 196 bits (497), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 119/327 (36%), Positives = 166/327 (50%), Gaps = 10/327 (3%)
Query: 45 MVTLQTMDTIFYEAQRQGRISFYLTTSGEEXXXXXXXXXXKNDDFVVPQYREPGVLLWRG 104
M+ + D+ AQRQ ++SFY+ + GEE D P YR+ +L+ R
Sbjct: 84 MLKTRIFDSRMVVAQRQKKMSFYMQSLGEEAIGSGQALALNRTDMCFPTYRQQSILMARD 143
Query: 105 FSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRK 164
S+ E Q N+ D KGRQ+PI Y + +FT+S +ATQ AVG A A +
Sbjct: 144 VSLVEMICQLLSNERDPLKGRQLPIMYSVREAGFFTISGNLATQFVQAVGWAMASAIKGD 203
Query: 165 DACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAIST--PISDQFRSDGAVV 222
A + GDG T+E DFH AL F+ V APVI NN WAIST I+ S
Sbjct: 204 TKIASAWIGDGATAESDFHTALTFAHVYRAPVILNVVNNQWAISTFQAIAGG-ESTTFAG 262
Query: 223 KGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDDSTKYR 282
+G G+ S+RVDGND +A+Y+A A E A P LIE +TYR G H+TSDD +KYR
Sbjct: 263 RGVGCGIASLRVDGNDFVAVYAASRWAAERARRGLGPSLIEWVTYRAGPHSTSDDPSKYR 322
Query: 283 PVDEIEWWRTTQDPVTRFRKWIESNGWWNGDIESELRSSVRKQILHALQEAEK------A 336
P D+ + DP+ R ++ + G W+ + + ++ A +EAE+
Sbjct: 323 PADDWSHF-PLGDPIARLKQHLIKIGHWSEEEHQATTAEFEAAVIAAQKEAEQYGTLANG 381
Query: 337 EKPPISDLFTDVYDVSPSNLREQEHSL 363
P + +F DVY P +LR Q L
Sbjct: 382 HIPSAASMFEDVYKEMPDHLRRQRQEL 408
>pdb|1QS0|A Chain A, Crystal Structure Of Pseudomonas Putida 2-Oxoisovalerate
Dehydrogenase (Branched-Chain Alpha-Keto Acid
Dehydrogenase, E1b)
Length = 407
Score = 185 bits (469), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 117/314 (37%), Positives = 157/314 (50%), Gaps = 10/314 (3%)
Query: 58 AQRQGRISFYLTTSGEEXXXXXXXXXXKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGN 117
AQRQ + SFY + GEE D P YR+ +L R S+ E Q N
Sbjct: 96 AQRQKKXSFYXQSLGEEAIGSGQALALNRTDXCFPTYRQQSILXARDVSLVEXICQLLSN 155
Query: 118 KADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGT 177
+ D KGRQ+PI Y + +FT+S +ATQ AVG A A + A + GDG T
Sbjct: 156 ERDPLKGRQLPIXYSVREAGFFTISGNLATQFVQAVGWAXASAIKGDTKIASAWIGDGAT 215
Query: 178 SEGDFHAALNFSAVTEAPVIFICRNNGWAIST--PISDQFRSDGAVVKGRAYGVRSIRVD 235
+E DFH AL F+ V APVI NN WAIST I+ S +G G+ S+RVD
Sbjct: 216 AESDFHTALTFAHVYRAPVILNVVNNQWAISTFQAIAGG-ESTTFAGRGVGCGIASLRVD 274
Query: 236 GNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDDSTKYRPVDEIEWWRTTQD 295
GND +A+Y+A A E A P LIE +TYR G H+TSDD +KYRP D+ + D
Sbjct: 275 GNDFVAVYAASRWAAERARRGLGPSLIEWVTYRAGPHSTSDDPSKYRPADDWSHF-PLGD 333
Query: 296 PVTRFRKWIESNGWWNGDIESELRSSVRKQILHALQEAEK------AEKPPISDLFTDVY 349
P+ R ++ + G W+ + + ++ A +EAE+ P + F DVY
Sbjct: 334 PIARLKQHLIKIGHWSEEEHQATTAEFEAAVIAAQKEAEQYGTLANGHIPSAASXFEDVY 393
Query: 350 DVSPSNLREQEHSL 363
P +LR Q L
Sbjct: 394 KEXPDHLRRQRQEL 407
>pdb|3EXE|A Chain A, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXE|C Chain C, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXE|E Chain E, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXE|G Chain G, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
Length = 382
Score = 121 bits (303), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 88/317 (27%), Positives = 141/317 (44%), Gaps = 5/317 (1%)
Query: 38 AIKMYNDMVTLQTMDTIFYEAQRQGRI-SFYLTTSGEEXXXXXXXXXXKNDDFVVPQYRE 96
+K Y M T++ M+ + +Q I F G+E D ++ YR
Sbjct: 53 GLKYYRMMQTVRRMELKADQLYKQKIIRGFCHLCDGQEACCVGLEAGINPTDHLITAYRA 112
Query: 97 PGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAA 156
G RG S++E + G K KG+ +H + N++ + + Q+P G A
Sbjct: 113 HGFTFTRGLSVREILAELTGRKGGCAKGKGGSMHMYAK--NFYGGNGIVGAQVPLGAGIA 170
Query: 157 YALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFR 216
A K + KD +T +GDG ++G A N +A+ + P IFIC NN + + T +
Sbjct: 171 LACKYNGKDEVCLTLYGDGAANQGQIFEAYNMAALWKLPCIFICENNRYGMGTSVERAAA 230
Query: 217 SDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSD 276
S +G + +RVDG D L + A A PIL+E TYR H+ SD
Sbjct: 231 STDYYKRGDF--IPGLRVDGMDILCVREATRFAAAYCRSGKGPILMELQTYRYHGHSMSD 288
Query: 277 DSTKYRPVDEIEWWRTTQDPVTRFRKWIESNGWWNGDIESELRSSVRKQILHALQEAEKA 336
YR +EI+ R+ DP+ + + ++ + + E+ VRK+I A Q A
Sbjct: 289 PGVSYRTREEIQEVRSKSDPIMLLKDRMVNSNLASVEELKEIDVEVRKEIEDAAQFATAD 348
Query: 337 EKPPISDLFTDVYDVSP 353
+PP+ +L +Y P
Sbjct: 349 PEPPLEELGYHIYSSDP 365
>pdb|3EXF|A Chain A, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXF|C Chain C, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXF|E Chain E, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXF|G Chain G, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|A Chain A, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|C Chain C, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|E Chain E, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|G Chain G, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|I Chain I, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|K Chain K, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|M Chain M, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|O Chain O, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|Q Chain Q, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|S Chain S, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|U Chain U, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|W Chain W, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|Y Chain Y, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|1 Chain 1, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|3 Chain 3, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|5 Chain 5, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXH|A Chain A, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXH|E Chain E, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
Length = 382
Score = 121 bits (303), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 88/317 (27%), Positives = 141/317 (44%), Gaps = 5/317 (1%)
Query: 38 AIKMYNDMVTLQTMDTIFYEAQRQGRI-SFYLTTSGEEXXXXXXXXXXKNDDFVVPQYRE 96
+K Y M T++ M+ + +Q I F G+E D ++ YR
Sbjct: 53 GLKYYRMMQTVRRMELKADQLYKQKIIRGFCHLCDGQEACCVGLEAGINPTDHLITAYRA 112
Query: 97 PGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAA 156
G RG S++E + G K KG+ +H + N++ + + Q+P G A
Sbjct: 113 HGFTFTRGLSVREILAELTGRKGGCAKGKGGSMHMYAK--NFYGGNGIVGAQVPLGAGIA 170
Query: 157 YALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFR 216
A K + KD +T +GDG ++G A N +A+ + P IFIC NN + + T +
Sbjct: 171 LACKYNGKDEVCLTLYGDGAANQGQIFEAYNMAALWKLPCIFICENNRYGMGTAVERAAA 230
Query: 217 SDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSD 276
S +G + +RVDG D L + A A PIL+E TYR H+ SD
Sbjct: 231 STDYYKRGDF--IPGLRVDGMDILCVREATRFAAAYCRSGKGPILMELQTYRYHGHSMSD 288
Query: 277 DSTKYRPVDEIEWWRTTQDPVTRFRKWIESNGWWNGDIESELRSSVRKQILHALQEAEKA 336
YR +EI+ R+ DP+ + + ++ + + E+ VRK+I A Q A
Sbjct: 289 PGVAYRTREEIQEVRSKSDPIMLLKDRMVNSNLASVEELKEIDVEVRKEIEDAAQFATAD 348
Query: 337 EKPPISDLFTDVYDVSP 353
+PP+ +L +Y P
Sbjct: 349 PEPPLEELGYHIYSSDP 365
>pdb|3EXH|C Chain C, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXH|G Chain G, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
Length = 382
Score = 120 bits (302), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 88/317 (27%), Positives = 140/317 (44%), Gaps = 5/317 (1%)
Query: 38 AIKMYNDMVTLQTMDTIFYEAQRQGRI-SFYLTTSGEEXXXXXXXXXXKNDDFVVPQYRE 96
+K Y M T++ M+ + +Q I F G+E D ++ YR
Sbjct: 53 GLKYYRMMQTVRRMELKADQLYKQKIIRGFCHLCDGQEACCVGLEAGINPTDHLITAYRA 112
Query: 97 PGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAA 156
G RG S++E + G K KG+ +H + N++ + + Q+P G A
Sbjct: 113 HGFTFTRGLSVREILAELTGRKGGCAKGKGGSMHMYAK--NFYGGNGIVGAQVPLGAGIA 170
Query: 157 YALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFR 216
A K + KD +T +GDG ++G A N +A+ + P IFIC NN + + T +
Sbjct: 171 LACKYNGKDEVCLTLYGDGAANQGQIFEAYNMAALWKLPCIFICENNRYGMGTAVERAAA 230
Query: 217 SDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSD 276
S +G + +RVDG D L + A A PIL+E TYR H SD
Sbjct: 231 STDYYKRGDF--IPGLRVDGMDILCVREATRFAAAYCRSGKGPILMELQTYRYHGHXMSD 288
Query: 277 DSTKYRPVDEIEWWRTTQDPVTRFRKWIESNGWWNGDIESELRSSVRKQILHALQEAEKA 336
YR +EI+ R+ DP+ + + ++ + + E+ VRK+I A Q A
Sbjct: 289 PGVAYRTREEIQEVRSKSDPIMLLKDRMVNSNLASVEELKEIDVEVRKEIEDAAQFATAD 348
Query: 337 EKPPISDLFTDVYDVSP 353
+PP+ +L +Y P
Sbjct: 349 PEPPLEELGYHIYSSDP 365
>pdb|2OZL|A Chain A, Human Pyruvate Dehydrogenase S264e Variant
pdb|2OZL|C Chain C, Human Pyruvate Dehydrogenase S264e Variant
Length = 365
Score = 120 bits (301), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 88/317 (27%), Positives = 140/317 (44%), Gaps = 5/317 (1%)
Query: 38 AIKMYNDMVTLQTMDTIFYEAQRQGRI-SFYLTTSGEEXXXXXXXXXXKNDDFVVPQYRE 96
+K Y M T++ M+ + +Q I F G+E D ++ YR
Sbjct: 36 GLKYYRMMQTVRRMELKADQLYKQKIIRGFCHLCDGQEACCVGLEAGINPTDHLITAYRA 95
Query: 97 PGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAA 156
G RG S++E + G K KG+ +H + N++ + + Q+P G A
Sbjct: 96 HGFTFTRGLSVREILAELTGRKGGCAKGKGGSMHMYAK--NFYGGNGIVGAQVPLGAGIA 153
Query: 157 YALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFR 216
A K + KD +T +GDG ++G A N +A+ + P IFIC NN + + T +
Sbjct: 154 LACKYNGKDEVCLTLYGDGAANQGQIFEAYNMAALWKLPCIFICENNRYGMGTSVERAAA 213
Query: 217 SDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSD 276
S +G + +RVDG D L + A A PIL+E TYR H SD
Sbjct: 214 STDYYKRGDF--IPGLRVDGMDILCVREATRFAAAYCRSGKGPILMELQTYRYHGHEMSD 271
Query: 277 DSTKYRPVDEIEWWRTTQDPVTRFRKWIESNGWWNGDIESELRSSVRKQILHALQEAEKA 336
YR +EI+ R+ DP+ + + ++ + + E+ VRK+I A Q A
Sbjct: 272 PGVSYRTREEIQEVRSKSDPIMLLKDRMVNSNLASVEELKEIDVEVRKEIEDAAQFATAD 331
Query: 337 EKPPISDLFTDVYDVSP 353
+PP+ +L +Y P
Sbjct: 332 PEPPLEELGYHIYSSDP 348
>pdb|3EXI|A Chain A, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex With
The Subunit-Binding Domain (Sbd) Of E2p, But Sbd Cannot
Be Modeled Into The Electron Density
Length = 382
Score = 120 bits (300), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 87/317 (27%), Positives = 141/317 (44%), Gaps = 5/317 (1%)
Query: 38 AIKMYNDMVTLQTMDTIFYEAQRQGRI-SFYLTTSGEEXXXXXXXXXXKNDDFVVPQYRE 96
+K Y M T++ M+ + +Q I F G+E D ++ +R
Sbjct: 53 GLKYYRMMQTVRRMELKADQLYKQKIIRGFCHLCDGQEACCVGLEAGINPTDHLITAFRA 112
Query: 97 PGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAA 156
G RG S++E + G K KG+ +H + N++ + + Q+P G A
Sbjct: 113 HGFTFTRGLSVREILAELTGRKGGCAKGKGGSMHMYAK--NFYGGNGIVGAQVPLGAGIA 170
Query: 157 YALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFR 216
A K + KD +T +GDG ++G A N +A+ + P IFIC NN + + T +
Sbjct: 171 LACKYNGKDEVCLTLYGDGAANQGQIFEAYNMAALWKLPCIFICENNRYGMGTSVERAAA 230
Query: 217 SDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSD 276
S +G + +RVDG D L + A A PIL+E TYR H+ SD
Sbjct: 231 STDYYKRGDF--IPGLRVDGMDILCVREATRFAAAYCRSGKGPILMELQTYRYHGHSMSD 288
Query: 277 DSTKYRPVDEIEWWRTTQDPVTRFRKWIESNGWWNGDIESELRSSVRKQILHALQEAEKA 336
YR +EI+ R+ DP+ + + ++ + + E+ VRK+I A Q A
Sbjct: 289 PGVSYRTREEIQEVRSKSDPIMLLKDRMVNSNLASVEELKEIDVEVRKEIEDAAQFATAD 348
Query: 337 EKPPISDLFTDVYDVSP 353
+PP+ +L +Y P
Sbjct: 349 PEPPLEELGYHIYSSDP 365
>pdb|1NI4|A Chain A, Human Pyruvate Dehydrogenase
pdb|1NI4|C Chain C, Human Pyruvate Dehydrogenase
Length = 365
Score = 112 bits (279), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 81/288 (28%), Positives = 124/288 (43%), Gaps = 4/288 (1%)
Query: 66 FYLTTSGEEXXXXXXXXXXKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKADYGKGR 125
F G+E D ++ YR G RG S++E + G K KG+
Sbjct: 65 FCHLCDGQEACCVGLEAGINPTDHLITAYRAHGFTFTRGLSVREILAELTGRKGGCAKGK 124
Query: 126 QMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAA 185
H + N++ + + Q+P G A A K + KD +T +GDG ++G A
Sbjct: 125 GGSXHXYAK--NFYGGNGIVGAQVPLGAGIALACKYNGKDEVCLTLYGDGAANQGQIFEA 182
Query: 186 LNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSA 245
N +A+ + P IFIC NN + T + S +G + +RVDG D L + A
Sbjct: 183 YNXAALWKLPCIFICENNRYGXGTSVERAAASTDYYKRGDF--IPGLRVDGXDILCVREA 240
Query: 246 VHAAREMAIGEGRPILIEALTYRVGHHTTSDDSTKYRPVDEIEWWRTTQDPVTRFRKWIE 305
A PIL E TYR H+ SD YR +EI+ R+ DP+ +
Sbjct: 241 TRFAAAYCRSGKGPILXELQTYRYHGHSXSDPGVSYRTREEIQEVRSKSDPIXLLKDRXV 300
Query: 306 SNGWWNGDIESELRSSVRKQILHALQEAEKAEKPPISDLFTDVYDVSP 353
++ + + E+ VRK+I A Q A +PP+ +L +Y P
Sbjct: 301 NSNLASVEELKEIDVEVRKEIEDAAQFATADPEPPLEELGYHIYSSDP 348
>pdb|2R5N|A Chain A, Crystal Structure Of Transketolase From Escherichia Coli
In Noncovalent Complex With Acceptor Aldose Ribose
5-Phosphate
pdb|2R5N|B Chain B, Crystal Structure Of Transketolase From Escherichia Coli
In Noncovalent Complex With Acceptor Aldose Ribose
5-Phosphate
pdb|2R8O|A Chain A, Transketolase From E. Coli In Complex With Substrate D-
Xylulose-5-Phosphate
pdb|2R8O|B Chain B, Transketolase From E. Coli In Complex With Substrate D-
Xylulose-5-Phosphate
pdb|2R8P|A Chain A, Transketolase From E. Coli In Complex With Substrate D-
Fructose-6-Phosphate
pdb|2R8P|B Chain B, Transketolase From E. Coli In Complex With Substrate D-
Fructose-6-Phosphate
Length = 669
Score = 37.0 bits (84), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 53/123 (43%), Gaps = 13/123 (10%)
Query: 140 TVSSTIATQLPHAVGAAYALKM----------DRKDACAVTYFGDGGTSEGDFHAALNFS 189
T + + + +AVG A A K D D + GDG EG H + +
Sbjct: 111 TTTGPLGQGIANAVGMAIAEKTLAAQFNRPGHDIVDHYTYAFMGDGCMMEGISHEVCSLA 170
Query: 190 AVTE-APVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIR-VDGNDALAIYSAVH 247
+ +I +NG +I + F D A+ + AYG IR +DG+DA +I AV
Sbjct: 171 GTLKLGKLIAFYDDNGISIDGHVEGWFTDDTAM-RFEAYGWHVIRDIDGHDAASIKRAVE 229
Query: 248 AAR 250
AR
Sbjct: 230 EAR 232
>pdb|1QGD|A Chain A, Transketolase From Escherichia Coli
pdb|1QGD|B Chain B, Transketolase From Escherichia Coli
Length = 662
Score = 37.0 bits (84), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 53/123 (43%), Gaps = 13/123 (10%)
Query: 140 TVSSTIATQLPHAVGAAYALKM----------DRKDACAVTYFGDGGTSEGDFHAALNFS 189
T + + + +AVG A A K D D + GDG EG H + +
Sbjct: 110 TTTGPLGQGIANAVGMAIAEKTLAAQFNRPGHDIVDHYTYAFMGDGCMMEGISHEVCSLA 169
Query: 190 AVTE-APVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIR-VDGNDALAIYSAVH 247
+ +I +NG +I + F D A+ + AYG IR +DG+DA +I AV
Sbjct: 170 GTLKLGKLIAFYDDNGISIDGHVEGWFTDDTAM-RFEAYGWHVIRDIDGHDAASIKRAVE 228
Query: 248 AAR 250
AR
Sbjct: 229 EAR 231
>pdb|2O1X|A Chain A, 1-deoxy-d-xylulose 5-phosphate Synthase (dxs) From
Deinococcus Radiodurans
pdb|2O1X|B Chain B, 1-deoxy-d-xylulose 5-phosphate Synthase (dxs) From
Deinococcus Radiodurans
pdb|2O1X|C Chain C, 1-deoxy-d-xylulose 5-phosphate Synthase (dxs) From
Deinococcus Radiodurans
pdb|2O1X|D Chain D, 1-deoxy-d-xylulose 5-phosphate Synthase (dxs) From
Deinococcus Radiodurans
Length = 629
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 34/75 (45%), Gaps = 1/75 (1%)
Query: 134 NKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTE 193
++H+ TV +T L +A+G A A KD GDG + G AALN
Sbjct: 115 SEHDAITVGHA-STSLTNALGMALARDAQGKDFHVAAVIGDGSLTGGMALAALNTIGDMG 173
Query: 194 APVIFICRNNGWAIS 208
++ + +N +IS
Sbjct: 174 RKMLIVLNDNEMSIS 188
>pdb|3MOS|A Chain A, The Structure Of Human Transketolase
Length = 616
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 54/129 (41%), Gaps = 8/129 (6%)
Query: 142 SSTIATQLPHAVGAAYALK-MDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAP-VIFI 199
+ ++ L A G AY K D+ GDG SEG A+ F+++ + ++ I
Sbjct: 120 TGSLGQGLGAACGMAYTGKYFDKASYRVYCLLGDGELSEGSVWEAMAFASIYKLDNLVAI 179
Query: 200 CRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRP 259
N S P Q + D + A+G +I VDG+ + A A+ +P
Sbjct: 180 LDINRLGQSDPAPLQHQMDIYQKRCEAFGWHAIIVDGHSVEELCKAFGQAKH------QP 233
Query: 260 ILIEALTYR 268
I A T++
Sbjct: 234 TAIIAKTFK 242
>pdb|3OOY|A Chain A, Crystal Structure Of Human Transketolase (Tkt)
pdb|3OOY|B Chain B, Crystal Structure Of Human Transketolase (Tkt)
Length = 616
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 54/129 (41%), Gaps = 8/129 (6%)
Query: 142 SSTIATQLPHAVGAAYALK-MDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAP-VIFI 199
+ ++ L A G AY K D+ GDG SEG A+ F+++ + ++ I
Sbjct: 118 TGSLGQGLGAACGMAYTGKYFDKASYRVYCLLGDGELSEGSVWEAMAFASIYKLDNLVAI 177
Query: 200 CRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRP 259
N S P Q + D + A+G +I VDG+ + A A+ +P
Sbjct: 178 LDINRLGQSDPAPLQHQMDIYQKRCEAFGWHAIIVDGHSVEELCKAFGQAKH------QP 231
Query: 260 ILIEALTYR 268
I A T++
Sbjct: 232 TAIIAKTFK 240
>pdb|3A8R|A Chain A, The Structure Of The N-Terminal Regulatory Domain Of A
Plant Nadph Oxidase
pdb|3A8R|B Chain B, The Structure Of The N-Terminal Regulatory Domain Of A
Plant Nadph Oxidase
Length = 179
Score = 29.3 bits (64), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Query: 202 NNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAI 254
N+GWA +Q + DG +++ R +G + I +DG+D A+ AR+ I
Sbjct: 24 NDGWAAVEKRFNQLQVDGVLLRSR-FG-KCIGMDGSDEFAVQMFDSLARKRGI 74
>pdb|3USZ|A Chain A, Crystal Structure Of Truncated Exo-1,31,4-Beta-Glucanase
(Exop) From Pseudoalteromonas Sp. Bb1
pdb|3UT0|A Chain A, Crystal Structure Of Exo-1,31,4-Beta-Glucanase (Exop) From
Pseudoalteromonas Sp. Bb1
pdb|3UT0|B Chain B, Crystal Structure Of Exo-1,31,4-Beta-Glucanase (Exop) From
Pseudoalteromonas Sp. Bb1
pdb|3UT0|C Chain C, Crystal Structure Of Exo-1,31,4-Beta-Glucanase (Exop) From
Pseudoalteromonas Sp. Bb1
pdb|3UT0|D Chain D, Crystal Structure Of Exo-1,31,4-Beta-Glucanase (Exop) From
Pseudoalteromonas Sp. Bb1
Length = 822
Score = 28.9 bits (63), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 40/102 (39%), Gaps = 25/102 (24%)
Query: 145 IATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEG--------------DFHAALNFSA 190
+ T + VGA + LK + A A + GDGGT G D H+A FSA
Sbjct: 192 MVTGIQGDVGADF-LKGSNRIATAKHFVGDGGTERGVDRGNTLIDEKGLRDIHSAGYFSA 250
Query: 191 VTEAPVIFICRNNGW----------AISTPISDQFRSDGAVV 222
+ + + N W ++ + +Q DG VV
Sbjct: 251 INQGVQSVMASFNSWNGKRVHGDKHLLTDVLKNQLGFDGFVV 292
>pdb|1YR2|A Chain A, Structural And Mechanistic Analysis Of Two Prolyl
Endopeptidases: Role Of Inter-Domain Dynamics In
Catalysis And Specificity
Length = 741
Score = 28.9 bits (63), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 29/58 (50%), Gaps = 6/58 (10%)
Query: 158 ALKMDRKDACAVTYFGDGGTS-----EGDFHAALNFSAVTEAPVIFICRNNGWAISTP 210
A +D K A AV+ G G S GD HA L+FS+ T+ P + + A +TP
Sbjct: 390 AFDLDGKPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQ-PATVLALDPATAKTTP 446
>pdb|3RRX|A Chain A, Crystal Structure Of Q683a Mutant Of
Exo-1,31,4-Beta-Glucanase (Exop) From Pseudoalteromonas
Sp. Bb1
Length = 822
Score = 28.5 bits (62), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 40/102 (39%), Gaps = 25/102 (24%)
Query: 145 IATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEG--------------DFHAALNFSA 190
+ T + VGA + LK + A A + GDGGT G D H+A FSA
Sbjct: 192 MVTGIQGDVGADF-LKGSNRIATAKHFVGDGGTERGVDRGNTLIDEKGLRDIHSAGYFSA 250
Query: 191 VTEAPVIFICRNNGW----------AISTPISDQFRSDGAVV 222
+ + + N W ++ + +Q DG VV
Sbjct: 251 INQGVQSVMASFNSWNGKRVHGDKHLLTDVLKNQLGFDGFVV 292
>pdb|2XTA|A Chain A, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase In Complex
With Acetyl-Coa (Triclinic Form)
pdb|2XTA|B Chain B, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase In Complex
With Acetyl-Coa (Triclinic Form)
pdb|2XTA|C Chain C, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase In Complex
With Acetyl-Coa (Triclinic Form)
pdb|2XTA|D Chain D, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase In Complex
With Acetyl-Coa (Triclinic Form)
pdb|2Y0P|A Chain A, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase In Complex
With The Enamine-Thdp Intermediate And Acetyl-Coa
pdb|2Y0P|B Chain B, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase In Complex
With The Enamine-Thdp Intermediate And Acetyl-Coa
pdb|2Y0P|C Chain C, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase In Complex
With The Enamine-Thdp Intermediate And Acetyl-Coa
pdb|2Y0P|D Chain D, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase In Complex
With The Enamine-Thdp Intermediate And Acetyl-Coa
pdb|2YIC|A Chain A, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase (Triclinic
Form)
pdb|2YIC|B Chain B, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase (Triclinic
Form)
pdb|2YIC|C Chain C, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase (Triclinic
Form)
pdb|2YIC|D Chain D, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase (Triclinic
Form)
pdb|2YID|A Chain A, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase In Complex
With The Enamine-Thdp Intermediate
pdb|2YID|B Chain B, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase In Complex
With The Enamine-Thdp Intermediate
pdb|2YID|C Chain C, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase In Complex
With The Enamine-Thdp Intermediate
pdb|2YID|D Chain D, Crystal Structure Of The Suca Domain Of Mycobacterium
Smegmatis Alpha-Ketoglutarate Decarboxylase In Complex
With The Enamine-Thdp Intermediate
pdb|2XT9|A Chain A, Crystal Structure Of Mycobacterium Smegmatis Alpha-
Ketoglutarate Decarboxylase In Complex With Gara
Length = 868
Score = 28.1 bits (61), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 34/87 (39%)
Query: 197 IFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGE 256
I I NN +T +D S+ + G V+G+D A A +
Sbjct: 313 IHIVVNNQIGFTTAPTDSRSSEYCTDVAKMIGAPIFHVNGDDPEACAWVARLAVDFRQAF 372
Query: 257 GRPILIEALTYRVGHHTTSDDSTKYRP 283
+ ++I+ L YR H DD + +P
Sbjct: 373 KKDVVIDMLCYRRRGHNEGDDPSMTQP 399
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,671,603
Number of Sequences: 62578
Number of extensions: 483620
Number of successful extensions: 1290
Number of sequences better than 100.0: 41
Number of HSP's better than 100.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 1231
Number of HSP's gapped (non-prelim): 45
length of query: 380
length of database: 14,973,337
effective HSP length: 101
effective length of query: 279
effective length of database: 8,652,959
effective search space: 2414175561
effective search space used: 2414175561
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)