Query 016903
Match_columns 380
No_of_seqs 272 out of 2393
Neff 7.2
Searched_HMMs 46136
Date Fri Mar 29 03:50:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016903.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016903hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1071 AcoA Pyruvate/2-oxoglu 100.0 8.1E-93 1.7E-97 688.2 35.8 351 13-364 2-357 (358)
2 KOG1182 Branched chain alpha-k 100.0 1.8E-84 3.9E-89 604.4 24.7 379 1-379 51-430 (432)
3 PLN02269 Pyruvate dehydrogenas 100.0 7E-81 1.5E-85 614.5 35.7 319 31-352 25-344 (362)
4 CHL00149 odpA pyruvate dehydro 100.0 9.4E-80 2E-84 604.3 37.1 321 29-351 13-341 (341)
5 TIGR03181 PDH_E1_alph_x pyruva 100.0 1.3E-79 2.7E-84 604.4 37.9 341 13-363 1-341 (341)
6 TIGR03182 PDH_E1_alph_y pyruva 100.0 9.2E-79 2E-83 592.6 33.8 314 35-350 1-315 (315)
7 PLN02374 pyruvate dehydrogenas 100.0 2.6E-77 5.6E-82 599.9 36.9 322 30-353 80-409 (433)
8 KOG0225 Pyruvate dehydrogenase 100.0 6.6E-78 1.4E-82 565.1 25.5 322 29-354 52-374 (394)
9 PF00676 E1_dh: Dehydrogenase 100.0 1.3E-73 2.9E-78 552.6 30.5 300 42-342 1-300 (300)
10 cd02000 TPP_E1_PDC_ADC_BCADC T 100.0 4.2E-72 9.1E-77 541.5 33.3 292 41-333 1-293 (293)
11 PRK09404 sucA 2-oxoglutarate d 100.0 4.5E-60 9.8E-65 508.1 36.4 340 32-378 185-565 (924)
12 TIGR00239 2oxo_dh_E1 2-oxoglut 100.0 2.6E-54 5.6E-59 461.8 35.1 343 31-378 184-566 (929)
13 cd02016 TPP_E1_OGDC_like Thiam 100.0 2.4E-49 5.2E-54 373.0 19.7 230 51-284 1-262 (265)
14 PRK12270 kgd alpha-ketoglutara 100.0 1.1E-35 2.4E-40 311.6 33.4 344 30-378 487-869 (1228)
15 PRK12315 1-deoxy-D-xylulose-5- 100.0 2E-34 4.2E-39 301.8 21.5 225 27-273 9-249 (581)
16 COG3959 Transketolase, N-termi 100.0 4.2E-31 9.1E-36 238.3 21.6 217 39-268 8-242 (243)
17 KOG0450 2-oxoglutarate dehydro 100.0 6.4E-29 1.4E-33 251.5 25.0 344 30-378 243-631 (1017)
18 COG0567 SucA 2-oxoglutarate de 100.0 1.2E-28 2.5E-33 259.3 26.7 341 30-378 169-547 (906)
19 KOG0451 Predicted 2-oxoglutara 100.0 1.8E-28 3.9E-33 243.4 20.9 305 31-340 152-497 (913)
20 PRK12754 transketolase; Review 100.0 1.9E-27 4.1E-32 251.0 29.4 178 88-275 58-254 (663)
21 TIGR00232 tktlase_bact transke 100.0 2.6E-27 5.6E-32 251.1 29.0 179 88-276 54-251 (653)
22 cd02012 TPP_TK Thiamine pyroph 100.0 1.4E-27 3.1E-32 226.6 23.3 182 87-277 49-237 (255)
23 PF00456 Transketolase_N: Tran 100.0 5.9E-28 1.3E-32 236.1 21.1 179 87-276 54-252 (332)
24 PRK12753 transketolase; Review 100.0 2.8E-27 6.1E-32 250.8 25.1 180 88-277 58-256 (663)
25 PRK05899 transketolase; Review 100.0 1E-26 2.3E-31 246.1 29.0 185 87-282 61-263 (624)
26 PTZ00089 transketolase; Provis 100.0 3.3E-27 7.2E-32 250.5 25.1 195 87-291 59-276 (661)
27 cd02007 TPP_DXS Thiamine pyrop 100.0 2.5E-27 5.4E-32 216.2 18.0 167 86-271 24-194 (195)
28 cd02017 TPP_E1_EcPDC_like Thia 100.0 2.4E-26 5.2E-31 225.9 25.2 184 81-273 48-323 (386)
29 PLN02790 transketolase 99.9 3.1E-26 6.8E-31 242.8 23.0 183 86-278 46-249 (654)
30 PRK05444 1-deoxy-D-xylulose-5- 99.9 2.9E-26 6.2E-31 240.8 21.9 240 13-275 2-250 (580)
31 TIGR00204 dxs 1-deoxy-D-xylulo 99.9 1.3E-25 2.8E-30 236.8 20.7 229 27-275 7-282 (617)
32 TIGR00759 aceE pyruvate dehydr 99.9 3.9E-24 8.5E-29 226.5 26.6 230 35-273 71-394 (885)
33 PRK12571 1-deoxy-D-xylulose-5- 99.9 4.2E-24 9.1E-29 226.0 22.2 242 13-276 4-292 (641)
34 TIGR03186 AKGDH_not_PDH alpha- 99.9 2.7E-23 5.9E-28 222.5 27.3 231 35-274 71-395 (889)
35 PLN02234 1-deoxy-D-xylulose-5- 99.9 1.1E-23 2.4E-28 220.6 22.3 198 69-277 108-331 (641)
36 cd02011 TPP_PK Thiamine pyroph 99.9 1.5E-24 3.4E-29 200.0 13.7 167 71-254 2-174 (227)
37 COG0021 TktA Transketolase [Ca 99.9 3.6E-23 7.8E-28 211.1 23.2 176 87-274 59-255 (663)
38 PRK13012 2-oxoacid dehydrogena 99.9 1.3E-22 2.9E-27 218.0 25.9 230 35-273 85-408 (896)
39 PLN02582 1-deoxy-D-xylulose-5- 99.9 7.2E-23 1.6E-27 216.1 22.1 232 27-276 40-329 (677)
40 PRK09405 aceE pyruvate dehydro 99.9 3.6E-22 7.9E-27 213.9 25.9 230 34-272 76-399 (891)
41 KOG0523 Transketolase [Carbohy 99.9 4.8E-22 1E-26 200.8 21.7 217 44-272 13-246 (632)
42 PF13292 DXP_synthase_N: 1-deo 99.8 5.2E-20 1.1E-24 171.7 10.4 220 27-266 7-270 (270)
43 COG1154 Dxs Deoxyxylulose-5-ph 99.8 8.3E-19 1.8E-23 178.5 17.2 229 26-274 10-286 (627)
44 PRK05261 putative phosphoketol 99.8 1E-18 2.2E-23 185.4 18.0 201 64-271 49-287 (785)
45 PRK11864 2-ketoisovalerate fer 99.8 1.9E-18 4.2E-23 166.1 17.9 167 93-266 14-206 (300)
46 cd02004 TPP_BZL_OCoD_HPCL Thia 99.8 2.8E-18 6.1E-23 153.3 13.2 114 141-266 46-171 (172)
47 cd02013 TPP_Xsc_like Thiamine 99.8 2.5E-18 5.5E-23 157.0 12.0 120 141-269 51-181 (196)
48 cd00568 TPP_enzymes Thiamine p 99.8 3E-18 6.5E-23 151.5 12.0 116 139-266 42-168 (168)
49 PLN02225 1-deoxy-D-xylulose-5- 99.8 1.3E-17 2.9E-22 175.5 16.2 225 27-270 85-367 (701)
50 cd02006 TPP_Gcl Thiamine pyrop 99.8 8.1E-18 1.8E-22 154.3 12.3 121 141-269 55-196 (202)
51 cd02002 TPP_BFDC Thiamine pyro 99.7 7.9E-18 1.7E-22 151.0 10.7 112 143-266 49-178 (178)
52 cd02014 TPP_POX Thiamine pyrop 99.7 4.9E-17 1.1E-21 146.2 12.6 116 141-268 49-174 (178)
53 PRK06163 hypothetical protein; 99.7 1.2E-16 2.6E-21 146.5 14.6 130 142-288 56-189 (202)
54 cd02008 TPP_IOR_alpha Thiamine 99.7 1.2E-16 2.7E-21 143.7 13.6 117 141-266 49-176 (178)
55 cd02015 TPP_AHAS Thiamine pyro 99.7 8.9E-17 1.9E-21 145.5 12.6 115 142-268 49-175 (186)
56 cd02003 TPP_IolD Thiamine pyro 99.7 9.3E-17 2E-21 147.7 12.6 117 141-269 46-186 (205)
57 cd03372 TPP_ComE Thiamine pyro 99.7 1.9E-16 4E-21 142.7 14.1 115 142-270 41-158 (179)
58 cd02010 TPP_ALS Thiamine pyrop 99.7 1.1E-16 2.4E-21 143.9 12.3 116 141-268 46-171 (177)
59 cd02001 TPP_ComE_PpyrDC Thiami 99.7 9.7E-17 2.1E-21 141.6 10.8 113 142-267 41-155 (157)
60 TIGR03846 sulfopy_beta sulfopy 99.7 1.5E-16 3.2E-21 143.6 11.9 113 142-268 41-157 (181)
61 cd03371 TPP_PpyrDC Thiamine py 99.7 4.5E-16 9.7E-21 141.3 15.0 118 141-270 46-166 (188)
62 cd02005 TPP_PDC_IPDC Thiamine 99.7 3.1E-16 6.7E-21 141.8 12.7 117 141-268 48-175 (183)
63 PF02775 TPP_enzyme_C: Thiamin 99.7 4.3E-16 9.3E-21 136.5 10.1 114 141-264 26-153 (153)
64 PRK07524 hypothetical protein; 99.6 8.5E-16 1.8E-20 160.4 12.6 118 142-271 406-533 (535)
65 cd02009 TPP_SHCHC_synthase Thi 99.6 8.9E-16 1.9E-20 137.7 10.4 112 142-266 50-174 (175)
66 PRK08327 acetolactate synthase 99.6 1E-15 2.2E-20 161.0 12.4 119 142-266 429-566 (569)
67 COG2609 AceE Pyruvate dehydrog 99.6 1.2E-13 2.6E-18 141.9 24.2 269 35-317 74-435 (887)
68 TIGR01504 glyox_carbo_lig glyo 99.6 1.7E-15 3.7E-20 159.9 11.0 119 142-268 417-556 (588)
69 cd03375 TPP_OGFOR Thiamine pyr 99.6 5.2E-15 1.1E-19 134.9 12.3 115 142-266 50-183 (193)
70 PRK08266 hypothetical protein; 99.6 3.9E-15 8.4E-20 155.7 12.7 118 142-271 401-529 (542)
71 PRK07092 benzoylformate decarb 99.6 5E-15 1.1E-19 154.5 13.4 113 142-266 406-529 (530)
72 PRK06154 hypothetical protein; 99.6 5.1E-15 1.1E-19 155.6 13.0 118 142-268 430-556 (565)
73 PRK12474 hypothetical protein; 99.6 3.8E-15 8.3E-20 155.0 11.9 113 142-266 388-518 (518)
74 COG0028 IlvB Thiamine pyrophos 99.6 4.6E-15 1E-19 154.8 12.1 118 140-269 405-533 (550)
75 PRK06725 acetolactate synthase 99.6 5.5E-15 1.2E-19 155.5 12.8 115 142-268 421-546 (570)
76 cd03376 TPP_PFOR_porB_like Thi 99.6 7.6E-15 1.6E-19 137.8 11.6 118 139-266 58-199 (235)
77 PRK06546 pyruvate dehydrogenas 99.6 1E-14 2.3E-19 153.6 13.4 116 141-268 406-531 (578)
78 PRK09107 acetolactate synthase 99.6 8.4E-15 1.8E-19 154.8 12.6 115 142-268 429-555 (595)
79 PRK11269 glyoxylate carboligas 99.6 5.7E-15 1.2E-19 156.0 11.2 120 141-268 417-557 (591)
80 PRK05858 hypothetical protein; 99.6 1E-14 2.2E-19 152.7 12.2 115 142-268 406-531 (542)
81 PRK06882 acetolactate synthase 99.6 1.9E-14 4.1E-19 151.5 13.4 117 141-268 419-547 (574)
82 TIGR02418 acolac_catab acetola 99.6 1.8E-14 3.9E-19 150.6 13.0 117 141-269 406-532 (539)
83 PRK07064 hypothetical protein; 99.6 1.5E-14 3.3E-19 151.3 12.3 114 142-267 404-528 (544)
84 PRK07979 acetolactate synthase 99.6 2E-14 4.3E-19 151.4 13.2 118 142-268 420-549 (574)
85 TIGR03297 Ppyr-DeCO2ase phosph 99.6 4.7E-14 1E-18 140.0 15.0 118 141-270 219-339 (361)
86 PRK07418 acetolactate synthase 99.6 1.3E-14 2.9E-19 153.9 11.8 116 141-268 432-560 (616)
87 PRK09124 pyruvate dehydrogenas 99.6 2.3E-14 5E-19 150.9 13.3 116 141-268 406-531 (574)
88 PRK07525 sulfoacetaldehyde ace 99.6 1.1E-14 2.4E-19 153.7 10.9 121 141-270 433-565 (588)
89 PRK08199 thiamine pyrophosphat 99.6 2.5E-14 5.3E-19 150.2 13.4 116 141-268 413-539 (557)
90 PRK06457 pyruvate dehydrogenas 99.6 2.4E-14 5.2E-19 150.0 13.2 116 141-268 394-520 (549)
91 PRK07586 hypothetical protein; 99.6 1.5E-14 3.3E-19 150.3 11.5 113 142-266 384-514 (514)
92 PLN02573 pyruvate decarboxylas 99.6 2.2E-14 4.8E-19 151.1 12.4 116 142-267 427-552 (578)
93 PRK06112 acetolactate synthase 99.6 2.9E-14 6.2E-19 150.3 13.1 115 142-268 436-561 (578)
94 cd02018 TPP_PFOR Thiamine pyro 99.6 1.8E-14 3.8E-19 135.5 10.3 119 141-266 62-202 (237)
95 PRK06456 acetolactate synthase 99.5 2.1E-14 4.6E-19 151.1 11.8 116 141-268 419-546 (572)
96 PRK06965 acetolactate synthase 99.5 3.5E-14 7.5E-19 149.9 13.3 116 142-268 436-563 (587)
97 PRK07710 acetolactate synthase 99.5 4.4E-14 9.5E-19 148.7 13.8 115 142-268 423-549 (571)
98 CHL00099 ilvB acetohydroxyacid 99.5 2.9E-14 6.2E-19 150.5 12.4 116 141-268 428-556 (585)
99 PLN02470 acetolactate synthase 99.5 2.8E-14 6.1E-19 150.6 12.1 115 142-268 425-558 (585)
100 PRK08979 acetolactate synthase 99.5 4.2E-14 9.2E-19 148.9 13.2 116 142-268 420-547 (572)
101 TIGR02720 pyruv_oxi_spxB pyruv 99.5 4.4E-14 9.6E-19 148.8 13.2 117 142-268 407-533 (575)
102 TIGR03393 indolpyr_decarb indo 99.5 2.7E-14 5.8E-19 149.4 11.2 114 142-267 403-527 (539)
103 PRK08273 thiamine pyrophosphat 99.5 4.9E-14 1.1E-18 149.1 13.4 116 142-268 414-547 (597)
104 PRK08617 acetolactate synthase 99.5 3.1E-14 6.6E-19 149.3 11.6 115 142-268 413-537 (552)
105 PRK09628 oorB 2-oxoglutarate-a 99.5 3.9E-14 8.4E-19 135.7 11.1 113 143-266 68-200 (277)
106 PRK08527 acetolactate synthase 99.5 6.4E-14 1.4E-18 147.2 13.9 116 142-269 413-540 (563)
107 PRK08322 acetolactate synthase 99.5 5.2E-14 1.1E-18 147.3 13.1 115 142-268 405-529 (547)
108 TIGR03457 sulphoacet_xsc sulfo 99.5 5.3E-14 1.1E-18 148.3 13.1 118 142-268 429-558 (579)
109 PRK08155 acetolactate synthase 99.5 6.1E-14 1.3E-18 147.4 13.5 115 142-268 418-544 (564)
110 TIGR03254 oxalate_oxc oxalyl-C 99.5 6.1E-14 1.3E-18 147.1 13.5 114 142-268 416-539 (554)
111 PRK06466 acetolactate synthase 99.5 6.2E-14 1.3E-18 147.7 13.5 117 141-268 421-549 (574)
112 PRK05778 2-oxoglutarate ferred 99.5 9.1E-14 2E-18 134.5 13.5 134 143-291 70-224 (301)
113 TIGR00118 acolac_lg acetolacta 99.5 5.2E-14 1.1E-18 147.7 12.3 115 142-268 411-537 (558)
114 PRK08611 pyruvate oxidase; Pro 99.5 7E-14 1.5E-18 147.3 12.7 115 142-268 407-531 (576)
115 PRK06048 acetolactate synthase 99.5 1.2E-13 2.6E-18 145.1 14.1 115 142-268 413-539 (561)
116 TIGR03394 indol_phenyl_DC indo 99.5 7.8E-14 1.7E-18 145.7 11.4 114 142-267 402-521 (535)
117 PRK09259 putative oxalyl-CoA d 99.5 1.5E-13 3.3E-18 144.6 13.3 114 142-268 423-547 (569)
118 PRK08978 acetolactate synthase 99.5 1.6E-13 3.4E-18 143.9 13.0 115 142-268 400-526 (548)
119 PRK11869 2-oxoacid ferredoxin 99.5 2.3E-13 5E-18 130.3 11.7 115 143-266 60-192 (280)
120 PRK07449 2-succinyl-5-enolpyru 99.5 9.1E-14 2E-18 146.2 9.2 112 142-266 424-548 (568)
121 PRK06276 acetolactate synthase 99.5 3.2E-13 7E-18 142.6 13.1 115 142-268 418-544 (586)
122 PRK07789 acetolactate synthase 99.5 1.7E-13 3.8E-18 145.3 10.6 116 142-268 446-577 (612)
123 PRK07282 acetolactate synthase 99.5 2E-13 4.3E-18 143.6 10.9 114 142-268 417-542 (566)
124 PRK11866 2-oxoacid ferredoxin 99.4 8E-13 1.7E-17 126.6 12.5 115 142-266 58-191 (279)
125 PRK11867 2-oxoglutarate ferred 99.4 9.6E-13 2.1E-17 126.8 12.3 115 142-266 68-201 (286)
126 TIGR02177 PorB_KorB 2-oxoacid: 99.4 9.2E-13 2E-17 126.6 10.5 113 143-266 53-185 (287)
127 TIGR03336 IOR_alpha indolepyru 99.4 4.2E-12 9.2E-17 134.3 13.4 120 138-266 398-529 (595)
128 PRK11865 pyruvate ferredoxin o 99.3 1.1E-10 2.4E-15 112.6 18.1 126 136-266 62-210 (299)
129 COG3961 Pyruvate decarboxylase 99.3 1.9E-11 4.2E-16 123.0 12.9 163 71-268 363-536 (557)
130 PLN02980 2-oxoglutarate decarb 99.2 2.5E-11 5.4E-16 141.0 10.2 116 140-268 756-890 (1655)
131 KOG1185 Thiamine pyrophosphate 99.2 1.6E-10 3.4E-15 115.3 12.5 118 140-268 427-561 (571)
132 COG3960 Glyoxylate carboligase 98.9 1.4E-09 3E-14 104.3 7.0 157 109-275 377-564 (592)
133 KOG4166 Thiamine pyrophosphate 98.9 1.9E-09 4.1E-14 106.1 7.1 117 141-269 522-649 (675)
134 KOG1184 Thiamine pyrophosphate 98.9 1.3E-08 2.8E-13 102.6 11.1 121 139-267 411-539 (561)
135 PF09364 XFP_N: XFP N-terminal 98.9 7.9E-09 1.7E-13 100.6 9.3 192 65-271 48-285 (379)
136 COG3962 Acetolactate synthase 98.7 7.3E-08 1.6E-12 96.1 10.3 116 141-268 442-576 (617)
137 COG1013 PorB Pyruvate:ferredox 98.5 3.5E-06 7.5E-11 81.6 16.4 148 141-302 68-236 (294)
138 COG4231 Indolepyruvate ferredo 98.1 6.5E-06 1.4E-10 85.4 8.5 119 137-265 422-552 (640)
139 COG3957 Phosphoketolase [Carbo 98.1 1.1E-05 2.4E-10 84.4 9.1 168 64-246 60-257 (793)
140 COG1165 MenD 2-succinyl-6-hydr 97.8 8.1E-05 1.8E-09 76.5 8.7 108 148-268 427-547 (566)
141 cd03377 TPP_PFOR_PNO Thiamine 97.4 0.0012 2.6E-08 65.4 11.0 95 166-266 152-266 (365)
142 cd06586 TPP_enzyme_PYR Pyrimid 97.1 0.011 2.4E-07 50.9 12.1 104 149-264 48-152 (154)
143 PRK13030 2-oxoacid ferredoxin 97.0 0.003 6.6E-08 71.3 10.4 115 141-264 466-600 (1159)
144 PRK09193 indolepyruvate ferred 97.0 0.0032 7E-08 70.9 10.3 120 140-264 478-614 (1165)
145 cd07039 TPP_PYR_POX Pyrimidine 97.0 0.012 2.7E-07 52.1 12.0 106 150-265 52-157 (164)
146 cd07035 TPP_PYR_POX_like Pyrim 96.9 0.013 2.8E-07 50.9 11.4 107 148-264 46-153 (155)
147 cd07034 TPP_PYR_PFOR_IOR-alpha 96.7 0.015 3.2E-07 50.9 10.0 106 148-264 53-158 (160)
148 PF02776 TPP_enzyme_N: Thiamin 96.7 0.015 3.3E-07 51.7 10.0 110 148-266 51-161 (172)
149 TIGR03845 sulfopyru_alph sulfo 96.7 0.035 7.5E-07 49.0 12.0 107 146-265 44-153 (157)
150 cd07038 TPP_PYR_PDC_IPDC_like 96.5 0.038 8.2E-07 48.8 11.3 109 147-264 46-160 (162)
151 TIGR02176 pyruv_ox_red pyruvat 96.4 0.034 7.3E-07 63.6 13.0 96 166-267 952-1067(1165)
152 PRK13029 2-oxoacid ferredoxin 96.4 0.018 3.8E-07 65.1 10.2 119 141-264 493-628 (1186)
153 cd07037 TPP_PYR_MenD Pyrimidin 95.8 0.057 1.2E-06 47.9 8.9 107 149-265 48-161 (162)
154 COG0028 IlvB Thiamine pyrophos 95.0 0.19 4E-06 53.2 10.9 108 149-266 52-160 (550)
155 TIGR03254 oxalate_oxc oxalyl-C 95.0 0.2 4.4E-06 52.8 11.3 110 149-266 53-163 (554)
156 PRK08611 pyruvate oxidase; Pro 95.0 0.23 5E-06 52.7 11.6 108 149-266 56-163 (576)
157 PRK07119 2-ketoisovalerate fer 94.9 0.29 6.3E-06 48.9 11.4 111 148-275 60-178 (352)
158 PRK08659 2-oxoglutarate ferred 94.9 0.21 4.6E-06 50.3 10.4 116 148-275 60-178 (376)
159 PRK07525 sulfoacetaldehyde ace 94.7 0.29 6.3E-06 52.1 11.5 107 150-266 57-163 (588)
160 PRK07524 hypothetical protein; 94.6 0.33 7.1E-06 51.0 11.6 111 148-266 51-163 (535)
161 PRK09259 putative oxalyl-CoA d 94.5 0.34 7.4E-06 51.3 11.5 110 149-266 60-170 (569)
162 PRK06457 pyruvate dehydrogenas 94.4 0.38 8.2E-06 50.7 11.5 107 150-266 53-159 (549)
163 PRK07064 hypothetical protein; 94.4 0.41 8.9E-06 50.3 11.6 110 149-266 54-165 (544)
164 TIGR03457 sulphoacet_xsc sulfo 94.3 0.35 7.5E-06 51.4 10.9 108 149-266 52-159 (579)
165 PRK07979 acetolactate synthase 94.2 0.36 7.8E-06 51.2 11.0 109 149-267 55-164 (574)
166 TIGR03297 Ppyr-DeCO2ase phosph 94.2 0.21 4.6E-06 50.0 8.7 114 143-265 33-151 (361)
167 PRK08266 hypothetical protein; 94.2 0.43 9.4E-06 50.2 11.4 111 149-267 56-168 (542)
168 PRK11269 glyoxylate carboligas 94.1 0.47 1E-05 50.5 11.5 109 149-266 55-164 (591)
169 PRK06112 acetolactate synthase 94.0 0.43 9.4E-06 50.6 11.1 108 149-266 62-170 (578)
170 PRK06456 acetolactate synthase 94.0 0.43 9.2E-06 50.6 11.0 108 149-266 56-164 (572)
171 PRK08273 thiamine pyrophosphat 94.0 0.43 9.3E-06 50.9 11.0 109 149-267 55-164 (597)
172 PRK07418 acetolactate synthase 94.0 0.49 1.1E-05 50.7 11.4 108 149-266 73-181 (616)
173 PRK06276 acetolactate synthase 93.9 0.51 1.1E-05 50.2 11.4 108 149-266 51-159 (586)
174 PRK06466 acetolactate synthase 93.9 0.43 9.4E-06 50.6 10.8 108 150-267 56-164 (574)
175 PRK06725 acetolactate synthase 93.9 0.43 9.2E-06 50.7 10.7 108 149-266 65-173 (570)
176 PRK07586 hypothetical protein; 93.8 0.45 9.7E-06 49.7 10.7 109 149-267 52-161 (514)
177 TIGR01504 glyox_carbo_lig glyo 93.8 0.47 1E-05 50.6 10.9 110 149-267 54-164 (588)
178 PRK08366 vorA 2-ketoisovalerat 93.8 0.56 1.2E-05 47.5 10.9 114 148-275 61-174 (390)
179 PLN02470 acetolactate synthase 93.8 0.47 1E-05 50.5 10.8 108 149-266 64-172 (585)
180 PF01855 POR_N: Pyruvate flavo 93.8 0.2 4.4E-06 47.0 7.1 112 149-274 49-161 (230)
181 cd07033 TPP_PYR_DXS_TK_like Py 93.7 0.74 1.6E-05 40.3 10.2 99 149-264 52-154 (156)
182 PRK08322 acetolactate synthase 93.7 0.56 1.2E-05 49.3 11.0 108 149-266 51-159 (547)
183 PRK07789 acetolactate synthase 93.6 0.56 1.2E-05 50.2 11.1 108 149-266 82-190 (612)
184 PRK08978 acetolactate synthase 93.6 0.46 1E-05 50.0 10.2 108 149-266 51-159 (548)
185 TIGR00118 acolac_lg acetolacta 93.5 0.58 1.3E-05 49.4 10.9 108 149-266 52-160 (558)
186 PRK07710 acetolactate synthase 93.5 0.55 1.2E-05 49.8 10.6 108 149-266 66-174 (571)
187 PRK12474 hypothetical protein; 93.4 0.66 1.4E-05 48.6 11.0 109 149-267 56-165 (518)
188 PRK09107 acetolactate synthase 93.3 0.61 1.3E-05 49.8 10.7 108 149-266 62-170 (595)
189 PRK08979 acetolactate synthase 93.2 0.66 1.4E-05 49.2 10.8 108 149-266 55-163 (572)
190 PRK06882 acetolactate synthase 93.2 0.69 1.5E-05 49.0 11.0 108 150-267 56-164 (574)
191 PRK08199 thiamine pyrophosphat 93.2 0.65 1.4E-05 49.0 10.7 108 149-266 59-167 (557)
192 TIGR03394 indol_phenyl_DC indo 93.2 0.61 1.3E-05 49.1 10.3 110 150-267 52-165 (535)
193 PRK06965 acetolactate synthase 93.1 0.85 1.8E-05 48.6 11.5 109 149-267 72-181 (587)
194 PRK08155 acetolactate synthase 93.1 0.73 1.6E-05 48.8 10.9 108 149-266 64-172 (564)
195 PRK05858 hypothetical protein; 92.6 1 2.2E-05 47.5 11.0 108 149-266 55-163 (542)
196 PRK07282 acetolactate synthase 92.6 0.85 1.8E-05 48.3 10.5 108 149-266 61-169 (566)
197 PRK08327 acetolactate synthase 92.5 0.69 1.5E-05 49.1 9.7 110 149-266 63-180 (569)
198 TIGR02720 pyruv_oxi_spxB pyruv 92.5 1.1 2.4E-05 47.6 11.2 108 150-267 52-159 (575)
199 PRK09627 oorA 2-oxoglutarate-a 92.4 0.77 1.7E-05 46.3 9.4 115 149-275 60-177 (375)
200 KOG4166 Thiamine pyrophosphate 92.4 0.77 1.7E-05 46.5 9.1 149 104-264 90-248 (675)
201 cd07036 TPP_PYR_E1-PDHc-beta_l 92.3 1 2.2E-05 40.0 9.1 99 148-263 56-164 (167)
202 PRK06048 acetolactate synthase 92.2 1.1 2.3E-05 47.5 10.7 108 149-266 58-166 (561)
203 PRK08617 acetolactate synthase 92.2 0.96 2.1E-05 47.7 10.3 107 150-266 56-163 (552)
204 TIGR02418 acolac_catab acetola 92.0 1.2 2.7E-05 46.8 10.8 108 150-267 50-158 (539)
205 TIGR03710 OAFO_sf 2-oxoacid:ac 92.0 0.76 1.7E-05 48.8 9.2 109 148-268 249-362 (562)
206 PF02779 Transket_pyr: Transke 91.9 2.2 4.8E-05 38.0 10.9 106 148-265 60-171 (178)
207 PRK08367 porA pyruvate ferredo 91.8 1.3 2.9E-05 44.8 10.4 113 148-274 62-176 (394)
208 PLN02573 pyruvate decarboxylas 91.8 1.1 2.5E-05 47.5 10.3 109 150-267 68-182 (578)
209 PRK08527 acetolactate synthase 91.7 1.2 2.7E-05 47.0 10.5 108 149-266 54-162 (563)
210 PRK09622 porA pyruvate flavodo 91.6 1.4 2.9E-05 45.0 10.2 112 148-273 68-181 (407)
211 CHL00099 ilvB acetohydroxyacid 91.5 1.4 3E-05 46.9 10.6 108 149-266 64-172 (585)
212 PRK09124 pyruvate dehydrogenas 91.4 1.6 3.5E-05 46.3 10.9 107 149-265 54-160 (574)
213 TIGR00204 dxs 1-deoxy-D-xylulo 91.3 1.3 2.9E-05 47.5 10.2 102 149-264 365-467 (617)
214 PRK07092 benzoylformate decarb 90.9 1.7 3.7E-05 45.6 10.5 109 149-266 61-170 (530)
215 PRK06154 hypothetical protein; 90.7 2.1 4.7E-05 45.3 11.1 93 166-267 83-176 (565)
216 TIGR00173 menD 2-succinyl-5-en 90.6 1 2.2E-05 46.0 8.3 107 150-266 52-165 (432)
217 PRK06546 pyruvate dehydrogenas 90.3 2 4.4E-05 45.6 10.5 108 149-266 54-161 (578)
218 TIGR00232 tktlase_bact transke 89.4 2.4 5.1E-05 45.9 10.2 80 176-264 430-512 (653)
219 cd01460 vWA_midasin VWA_Midasi 89.3 6 0.00013 38.0 11.8 84 167-251 166-257 (266)
220 PLN02683 pyruvate dehydrogenas 89.2 3.6 7.9E-05 41.1 10.7 101 147-264 85-195 (356)
221 PRK11892 pyruvate dehydrogenas 88.8 3.3 7.2E-05 42.9 10.3 99 148-263 201-309 (464)
222 PRK05444 1-deoxy-D-xylulose-5- 88.4 2.9 6.3E-05 44.5 10.0 101 149-264 334-436 (580)
223 PRK05899 transketolase; Review 88.3 2.8 6E-05 45.1 9.8 102 149-264 380-483 (624)
224 PRK12571 1-deoxy-D-xylulose-5- 88.3 2.9 6.3E-05 45.2 9.9 102 149-265 374-477 (641)
225 PTZ00089 transketolase; Provis 88.0 3.6 7.7E-05 44.6 10.4 101 149-264 416-519 (661)
226 PLN02234 1-deoxy-D-xylulose-5- 87.7 3.2 7E-05 44.7 9.8 99 149-262 412-512 (641)
227 TIGR03336 IOR_alpha indolepyru 87.7 3.5 7.6E-05 44.1 10.1 109 149-274 59-169 (595)
228 PLN02582 1-deoxy-D-xylulose-5- 86.5 4.7 0.0001 43.8 10.2 102 149-264 411-513 (677)
229 PLN02980 2-oxoglutarate decarb 86.4 2.7 5.9E-05 50.3 9.0 107 149-265 352-465 (1655)
230 COG0674 PorA Pyruvate:ferredox 86.3 4.9 0.00011 40.3 9.7 111 147-270 58-169 (365)
231 PLN02225 1-deoxy-D-xylulose-5- 86.2 4.9 0.00011 43.7 10.1 102 149-264 436-538 (701)
232 PRK12315 1-deoxy-D-xylulose-5- 85.3 5.8 0.00012 42.4 10.1 101 149-264 333-434 (581)
233 COG0021 TktA Transketolase [Ca 84.5 3.4 7.4E-05 44.0 7.7 79 182-265 441-519 (663)
234 COG4032 Predicted thiamine-pyr 84.0 4.3 9.2E-05 35.2 6.7 107 147-264 53-161 (172)
235 PRK12753 transketolase; Review 84.0 6.6 0.00014 42.6 10.0 103 149-264 415-518 (663)
236 PTZ00182 3-methyl-2-oxobutanat 83.7 9.2 0.0002 38.2 10.2 98 149-263 95-202 (355)
237 PLN02790 transketolase 83.6 7.4 0.00016 42.2 10.1 74 181-264 431-509 (654)
238 PRK09212 pyruvate dehydrogenas 83.3 10 0.00023 37.4 10.3 66 193-268 110-176 (327)
239 PRK12754 transketolase; Review 80.9 10 0.00022 41.2 9.9 104 149-264 415-518 (663)
240 TIGR03393 indolpyr_decarb indo 78.8 14 0.0003 38.9 10.1 109 148-267 51-166 (539)
241 CHL00144 odpB pyruvate dehydro 77.9 20 0.00042 35.5 10.2 61 193-263 110-171 (327)
242 COG3958 Transketolase, C-termi 77.7 12 0.00027 36.2 8.3 103 148-264 61-165 (312)
243 smart00861 Transket_pyr Transk 73.9 30 0.00065 30.2 9.4 100 149-264 62-164 (168)
244 COG1107 Archaea-specific RecJ- 69.9 7.4 0.00016 41.1 5.0 54 181-243 403-458 (715)
245 PF04273 DUF442: Putative phos 68.2 14 0.00031 30.5 5.5 47 217-266 46-95 (110)
246 COG1240 ChlD Mg-chelatase subu 64.8 49 0.0011 31.6 9.0 98 144-248 155-258 (261)
247 PRK07449 2-succinyl-5-enolpyru 63.3 29 0.00064 36.6 8.2 109 149-266 60-173 (568)
248 PF13519 VWA_2: von Willebrand 63.1 31 0.00067 29.1 7.1 73 165-248 99-171 (172)
249 PF09851 SHOCT: Short C-termin 62.5 12 0.00027 23.5 3.2 28 295-323 3-30 (31)
250 cd01453 vWA_transcription_fact 60.8 72 0.0016 28.4 9.2 71 165-249 107-178 (183)
251 PRK11032 hypothetical protein; 60.2 31 0.00068 30.5 6.5 49 297-345 30-78 (160)
252 COG0191 Fba Fructose/tagatose 60.0 72 0.0016 31.0 9.4 113 164-290 41-164 (286)
253 COG1303 Uncharacterized protei 58.9 25 0.00055 31.0 5.5 46 218-266 21-66 (179)
254 COG1154 Dxs Deoxyxylulose-5-ph 58.2 70 0.0015 34.2 9.6 104 148-264 368-473 (627)
255 PF01380 SIS: SIS domain SIS d 56.8 32 0.0007 28.0 5.9 57 144-202 10-89 (131)
256 COG2205 KdpD Osmosensitive K+ 53.6 36 0.00077 37.7 6.8 76 165-241 249-324 (890)
257 PRK13685 hypothetical protein; 52.3 1.7E+02 0.0037 28.6 11.0 82 166-249 194-286 (326)
258 cd01451 vWA_Magnesium_chelatas 52.1 1.6E+02 0.0035 25.7 10.2 72 166-246 99-176 (178)
259 TIGR02176 pyruv_ox_red pyruvat 51.2 1.3E+02 0.0027 35.2 11.2 112 149-273 64-175 (1165)
260 COG0079 HisC Histidinol-phosph 46.3 2.3E+02 0.005 28.2 11.0 138 184-335 136-281 (356)
261 cd00640 Trp-synth-beta_II Tryp 46.1 1.8E+02 0.0038 26.8 9.7 38 188-237 68-105 (244)
262 PRK00945 acetyl-CoA decarbonyl 45.9 1.4E+02 0.003 26.7 8.4 37 165-201 34-71 (171)
263 cd05014 SIS_Kpsf KpsF-like pro 45.4 87 0.0019 25.5 6.7 19 219-237 65-83 (128)
264 PRK13683 hypothetical protein; 44.6 24 0.00052 27.8 2.8 39 228-270 14-52 (87)
265 TIGR00239 2oxo_dh_E1 2-oxoglut 44.0 1.7E+02 0.0036 33.3 10.3 109 146-264 657-772 (929)
266 PRK09195 gatY tagatose-bisphos 42.6 3.2E+02 0.007 26.4 11.6 113 165-291 42-164 (284)
267 PRK00278 trpC indole-3-glycero 41.2 2.2E+02 0.0047 27.0 9.5 96 156-267 74-170 (260)
268 PF07295 DUF1451: Protein of u 39.9 70 0.0015 27.9 5.4 42 294-335 17-58 (146)
269 PF06833 MdcE: Malonate decarb 39.9 2.3E+02 0.0051 26.7 9.1 76 165-263 28-111 (234)
270 COG0075 Serine-pyruvate aminot 39.2 3.9E+02 0.0086 27.1 11.3 64 165-247 55-127 (383)
271 PRK13406 bchD magnesium chelat 39.0 2.6E+02 0.0056 30.0 10.6 95 144-249 471-582 (584)
272 KOG1184 Thiamine pyrophosphate 38.8 99 0.0021 32.5 7.0 97 166-267 68-170 (561)
273 PRK10490 sensor protein KdpD; 37.4 1.3E+02 0.0029 33.9 8.5 93 166-266 252-345 (895)
274 PLN02331 phosphoribosylglycina 37.3 3.2E+02 0.0069 25.1 9.6 54 167-237 2-58 (207)
275 cd05008 SIS_GlmS_GlmD_1 SIS (S 37.2 1.3E+02 0.0028 24.4 6.5 18 220-237 65-82 (126)
276 PRK13010 purU formyltetrahydro 37.2 1.8E+02 0.0039 28.2 8.3 54 164-236 93-149 (289)
277 PRK06027 purU formyltetrahydro 36.3 3E+02 0.0064 26.6 9.7 54 164-236 89-145 (286)
278 PRK05647 purN phosphoribosylgl 36.0 2E+02 0.0043 26.2 8.0 57 166-238 3-61 (200)
279 PRK05772 translation initiatio 36.0 2E+02 0.0044 28.9 8.6 118 141-272 175-295 (363)
280 PRK09404 sucA 2-oxoglutarate d 35.7 2.7E+02 0.0059 31.6 10.4 107 147-265 656-771 (924)
281 TIGR03590 PseG pseudaminic aci 35.7 2.1E+02 0.0045 27.2 8.5 71 169-239 2-91 (279)
282 PF06945 DUF1289: Protein of u 35.5 58 0.0012 22.9 3.4 30 259-292 3-32 (51)
283 PF06570 DUF1129: Protein of u 34.6 65 0.0014 29.4 4.6 38 293-331 6-43 (206)
284 cd08323 CARD_APAF1 Caspase act 34.5 45 0.00097 26.3 3.0 28 297-324 16-43 (86)
285 TIGR03186 AKGDH_not_PDH alpha- 34.2 3.5E+02 0.0075 30.7 10.8 122 137-264 560-688 (889)
286 PF01738 DLH: Dienelactone hyd 34.1 2.4E+02 0.0052 25.2 8.4 55 142-202 100-154 (218)
287 PRK07998 gatY putative fructos 34.1 4.4E+02 0.0096 25.5 10.7 113 165-291 42-162 (283)
288 COG0108 RibB 3,4-dihydroxy-2-b 34.0 1.4E+02 0.003 27.5 6.4 68 161-235 120-192 (203)
289 PRK06381 threonine synthase; V 32.9 3.4E+02 0.0073 26.2 9.7 57 188-261 81-137 (319)
290 PF14399 Transpep_BrtH: NlpC/p 32.7 2.4E+02 0.0053 26.9 8.6 45 220-268 55-99 (317)
291 smart00115 CASc Caspase, inter 32.6 1.5E+02 0.0032 27.7 6.8 69 195-264 9-79 (241)
292 cd08325 CARD_CASP1-like Caspas 31.9 75 0.0016 24.7 3.9 40 294-333 15-54 (83)
293 PF08312 cwf21: cwf21 domain; 31.4 1.3E+02 0.0027 20.9 4.5 30 298-328 14-43 (46)
294 cd05009 SIS_GlmS_GlmD_2 SIS (S 31.1 1.3E+02 0.0027 25.2 5.6 38 165-203 62-99 (153)
295 PRK12738 kbaY tagatose-bisphos 30.7 5.1E+02 0.011 25.1 11.6 113 165-291 42-164 (286)
296 TIGR00515 accD acetyl-CoA carb 30.6 95 0.0021 30.1 5.2 23 184-206 146-168 (285)
297 cd08326 CARD_CASP9 Caspase act 30.5 56 0.0012 25.6 3.0 35 298-333 19-53 (84)
298 TIGR00655 PurU formyltetrahydr 30.3 3E+02 0.0066 26.5 8.6 54 164-236 84-140 (280)
299 cd01987 USP_OKCHK USP domain i 30.0 2.5E+02 0.0054 22.3 7.1 64 176-239 10-73 (124)
300 PRK07668 hypothetical protein; 29.9 87 0.0019 29.9 4.7 39 293-332 6-44 (254)
301 PLN02522 ATP citrate (pro-S)-l 29.7 2.5E+02 0.0055 30.3 8.6 86 164-255 221-319 (608)
302 cd01561 CBS_like CBS_like: Thi 29.2 5E+02 0.011 24.6 10.2 39 188-238 71-109 (291)
303 PLN02880 tyrosine decarboxylas 29.0 4.5E+02 0.0097 27.4 10.3 69 220-311 194-272 (490)
304 KOG0369 Pyruvate carboxylase [ 28.7 1.4E+02 0.0031 32.5 6.4 32 167-200 160-191 (1176)
305 cd08327 CARD_RAIDD Caspase act 28.7 61 0.0013 26.0 2.9 35 298-333 24-58 (94)
306 PF10415 FumaraseC_C: Fumarase 28.7 65 0.0014 23.1 2.8 19 300-318 28-46 (55)
307 cd01467 vWA_BatA_type VWA BatA 27.9 3.9E+02 0.0084 22.9 8.9 71 165-235 102-175 (180)
308 PF04695 Pex14_N: Peroxisomal 27.5 96 0.0021 26.5 4.2 32 294-326 20-51 (136)
309 PRK08610 fructose-bisphosphate 27.4 5.8E+02 0.013 24.7 12.2 113 165-291 42-165 (286)
310 cd05710 SIS_1 A subgroup of th 27.3 1.3E+02 0.0027 24.7 4.8 40 163-204 46-85 (120)
311 TIGR03142 cytochro_ccmI cytoch 27.2 1E+02 0.0023 25.4 4.3 38 295-333 43-80 (117)
312 TIGR03127 RuMP_HxlB 6-phospho 27.1 2.2E+02 0.0047 24.8 6.6 20 219-238 90-109 (179)
313 cd08330 CARD_ASC_NALP1 Caspase 26.9 74 0.0016 24.7 3.1 27 296-322 16-42 (82)
314 PLN03013 cysteine synthase 26.9 3.1E+02 0.0066 28.3 8.4 54 188-255 193-246 (429)
315 PLN02618 tryptophan synthase, 26.9 3.7E+02 0.0079 27.5 8.9 70 152-235 107-176 (410)
316 cd08329 CARD_BIRC2_BIRC3 Caspa 26.2 81 0.0018 25.2 3.3 36 295-331 23-58 (94)
317 COG0498 ThrC Threonine synthas 26.2 2.8E+02 0.0061 28.4 7.9 69 165-251 127-195 (411)
318 PRK13936 phosphoheptose isomer 26.1 2.5E+02 0.0053 25.3 6.9 38 163-202 110-147 (197)
319 cd00032 CASc Caspase, interleu 25.9 1.8E+02 0.0039 27.1 6.1 69 195-264 10-80 (243)
320 PRK06988 putative formyltransf 25.8 3.6E+02 0.0077 26.3 8.4 59 168-235 4-62 (312)
321 PF05014 Nuc_deoxyrib_tr: Nucl 25.8 1.2E+02 0.0025 24.6 4.3 39 166-205 63-101 (113)
322 COG2515 Acd 1-aminocyclopropan 25.7 4.3E+02 0.0094 26.0 8.6 106 168-291 66-175 (323)
323 PRK10886 DnaA initiator-associ 25.7 2.5E+02 0.0055 25.5 6.8 18 220-237 128-145 (196)
324 PF00205 TPP_enzyme_M: Thiamin 25.5 40 0.00088 28.2 1.5 34 165-198 11-44 (137)
325 PRK08452 flagellar protein Fla 25.4 80 0.0017 26.7 3.2 41 2-48 74-115 (124)
326 PF10566 Glyco_hydro_97: Glyco 25.4 2E+02 0.0043 27.8 6.3 55 179-235 72-126 (273)
327 cd08332 CARD_CASP2 Caspase act 25.1 93 0.002 24.6 3.4 26 297-322 22-47 (90)
328 PF00926 DHBP_synthase: 3,4-di 24.5 1.1E+02 0.0023 28.0 4.1 66 163-235 118-188 (194)
329 TIGR03436 acidobact_VWFA VWFA- 24.5 4.6E+02 0.01 24.8 8.9 85 165-252 164-253 (296)
330 cd05017 SIS_PGI_PMI_1 The memb 24.5 1.4E+02 0.0029 24.4 4.5 36 164-201 43-78 (119)
331 cd08785 CARD_CARD9-like Caspas 24.4 78 0.0017 24.9 2.8 27 297-323 18-44 (86)
332 TIGR00315 cdhB CO dehydrogenas 24.3 1.2E+02 0.0027 26.8 4.4 39 164-202 26-64 (162)
333 TIGR02442 Cob-chelat-sub cobal 24.0 2.8E+02 0.006 30.0 7.9 80 146-234 538-632 (633)
334 TIGR01415 trpB_rel pyridoxal-p 24.0 7E+02 0.015 25.5 10.4 45 185-238 132-177 (419)
335 PF06506 PrpR_N: Propionate ca 24.0 1.8E+02 0.0039 25.6 5.5 86 164-254 75-168 (176)
336 cd01822 Lysophospholipase_L1_l 23.9 2.1E+02 0.0045 24.3 5.8 26 238-264 82-107 (177)
337 PF10925 DUF2680: Protein of u 23.6 2.7E+02 0.0059 20.2 5.3 30 300-329 23-52 (59)
338 PRK13028 tryptophan synthase s 23.6 4.3E+02 0.0094 26.9 8.7 71 151-235 97-167 (402)
339 PF01116 F_bP_aldolase: Fructo 23.5 6.8E+02 0.015 24.2 10.9 112 165-290 41-163 (287)
340 PLN02569 threonine synthase 23.4 5.2E+02 0.011 27.0 9.5 50 187-248 204-253 (484)
341 COG0044 PyrC Dihydroorotase an 23.4 3E+02 0.0065 28.3 7.6 94 168-266 144-256 (430)
342 CHL00174 accD acetyl-CoA carbo 23.2 2.2E+02 0.0047 27.9 6.1 43 165-207 132-182 (296)
343 cd01450 vWFA_subfamily_ECM Von 23.1 3.1E+02 0.0066 22.6 6.6 39 164-202 102-141 (161)
344 cd02991 UAS_ETEA UAS family, E 23.0 4.3E+02 0.0092 21.7 8.5 82 178-265 2-84 (116)
345 PRK13938 phosphoheptose isomer 23.0 2E+02 0.0043 26.2 5.6 42 161-204 110-151 (196)
346 PRK13803 bifunctional phosphor 22.9 5E+02 0.011 28.0 9.5 72 151-236 305-376 (610)
347 PRK12857 fructose-1,6-bisphosp 22.6 7.1E+02 0.015 24.1 11.6 113 165-291 42-164 (284)
348 TIGR00512 salvage_mtnA S-methy 22.6 6E+02 0.013 25.2 9.3 116 142-271 156-273 (331)
349 COG1797 CobB Cobyrinic acid a, 22.4 2.9E+02 0.0062 28.6 7.0 57 185-252 103-166 (451)
350 TIGR00506 ribB 3,4-dihydroxy-2 22.4 2.4E+02 0.0052 25.9 6.0 67 162-235 122-193 (199)
351 TIGR00670 asp_carb_tr aspartat 22.4 4.5E+02 0.0097 25.6 8.3 192 31-235 7-208 (301)
352 COG3960 Glyoxylate carboligase 22.4 2.7E+02 0.0058 27.9 6.5 47 218-266 117-164 (592)
353 TIGR00167 cbbA ketose-bisphosp 22.3 7.2E+02 0.016 24.1 12.3 113 165-291 42-167 (288)
354 TIGR01139 cysK cysteine syntha 22.3 6.4E+02 0.014 24.0 9.4 59 188-260 75-133 (298)
355 KOG1145 Mitochondrial translat 22.1 6.6E+02 0.014 27.1 9.6 101 164-271 225-342 (683)
356 PF02520 DUF148: Domain of unk 22.1 1.4E+02 0.0031 24.3 4.1 35 341-375 66-100 (113)
357 TIGR01858 tag_bisphos_ald clas 22.0 7.2E+02 0.016 24.0 11.6 113 165-291 40-162 (282)
358 PRK04346 tryptophan synthase s 21.9 4.8E+02 0.01 26.5 8.6 72 151-236 93-164 (397)
359 COG0299 PurN Folate-dependent 21.8 5.7E+02 0.012 23.5 8.1 80 166-266 2-87 (200)
360 TIGR00441 gmhA phosphoheptose 21.7 1.5E+02 0.0033 25.5 4.4 40 163-204 78-117 (154)
361 PF04748 Polysacc_deac_2: Dive 21.7 3.1E+02 0.0067 25.3 6.7 46 220-266 133-183 (213)
362 PRK08329 threonine synthase; V 21.5 3.7E+02 0.008 26.5 7.7 39 187-237 121-159 (347)
363 cd01452 VWA_26S_proteasome_sub 21.5 2E+02 0.0043 26.0 5.2 35 166-200 108-143 (187)
364 PF00140 Sigma70_r1_2: Sigma-7 21.3 1.6E+02 0.0034 19.2 3.3 35 295-329 2-36 (37)
365 COG0777 AccD Acetyl-CoA carbox 21.3 1.5E+02 0.0033 28.7 4.5 62 142-204 131-206 (294)
366 PRK08558 adenine phosphoribosy 21.2 6.8E+02 0.015 23.4 9.3 107 149-263 95-208 (238)
367 PF03646 FlaG: FlaG protein; 21.1 43 0.00092 27.1 0.7 33 11-48 66-99 (107)
368 TIGR01117 mmdA methylmalonyl-C 21.0 1.2E+02 0.0027 31.9 4.3 12 194-205 155-166 (512)
369 cd00198 vWFA Von Willebrand fa 20.9 3E+02 0.0065 22.1 6.1 38 164-201 100-139 (161)
370 cd01671 CARD Caspase activatio 20.8 1.3E+02 0.0028 22.5 3.4 29 295-323 13-41 (80)
371 PF06707 DUF1194: Protein of u 20.8 6.7E+02 0.014 23.1 9.7 95 148-250 96-198 (205)
372 PRK01792 ribB 3,4-dihydroxy-2- 20.8 3.1E+02 0.0068 25.5 6.4 67 162-235 132-203 (214)
373 PRK00910 ribB 3,4-dihydroxy-2- 20.8 2.9E+02 0.0064 25.7 6.2 66 163-235 134-204 (218)
374 cd08788 CARD_NOD2_2_CARD15 Cas 20.7 1.9E+02 0.004 22.6 4.1 26 295-320 14-39 (81)
375 cd05013 SIS_RpiR RpiR-like pro 20.7 3.2E+02 0.0068 21.9 6.1 80 145-240 19-99 (139)
376 smart00114 CARD Caspase recrui 20.7 86 0.0019 24.3 2.4 26 299-324 24-49 (88)
377 COG1334 FlaG Uncharacterized f 20.6 1.2E+02 0.0025 25.6 3.2 36 7-46 74-109 (120)
378 cd08810 CARD_BCL10 Caspase act 20.5 1.1E+02 0.0024 24.0 3.0 26 297-322 18-43 (84)
379 PRK00414 gmhA phosphoheptose i 20.4 2.9E+02 0.0063 24.8 6.1 41 162-204 109-149 (192)
380 KOG4426 Arginyl-tRNA synthetas 20.4 8E+02 0.017 25.6 9.5 48 275-322 442-494 (656)
381 PRK01322 6-carboxyhexanoate--C 20.3 4.1E+02 0.0089 25.2 7.2 76 181-265 157-241 (242)
382 COG1063 Tdh Threonine dehydrog 20.3 5.2E+02 0.011 25.4 8.5 53 148-204 150-203 (350)
383 COG0794 GutQ Predicted sugar p 20.2 3.1E+02 0.0068 25.2 6.3 20 219-238 104-123 (202)
384 TIGR00147 lipid kinase, YegS/R 20.1 2.5E+02 0.0054 26.7 6.0 46 165-230 58-104 (293)
385 COG1424 BioW Pimeloyl-CoA synt 20.1 3.4E+02 0.0074 25.0 6.2 76 182-266 154-238 (239)
386 PRK15482 transcriptional regul 20.1 2.9E+02 0.0062 26.2 6.4 82 144-241 140-222 (285)
387 TIGR01275 ACC_deam_rel pyridox 20.0 6.8E+02 0.015 23.9 9.1 55 184-249 71-126 (311)
No 1
>COG1071 AcoA Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit [Energy production and conversion]
Probab=100.00 E-value=8.1e-93 Score=688.16 Aligned_cols=351 Identities=38% Similarity=0.656 Sum_probs=337.0
Q ss_pred CeeEEeCCCCCCCCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc-cccccchhhHHHHHHHhcCCCC-c
Q 016903 13 PCYRVLDDDGQPFPDSSFV--KVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRIS-FYLTTSGEEAINIASAAAIKND-D 88 (380)
Q Consensus 13 ~~~~~~~~~g~~~~~~~~~--~~~~e~l~~~y~~M~~~R~~e~~~~~~~~~g~i~-~~~~~~G~Ea~~~~~~~~l~~~-D 88 (380)
+.+++++.+|..+.+.... .+++++++++|++|+++|.||+++..++++|+++ |+|+++||||+++|++.+|+++ |
T Consensus 2 ~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~y~~M~l~R~fd~k~~~l~r~G~i~gf~~~~~GqEA~~vg~~~aL~~~~D 81 (358)
T COG1071 2 SLIRVLDEDGRAVDELPGPNAALSKEELLELYRLMLLIRRFDEKMLQLQRQGKIGGFYHLYIGQEAVQVGAAAALRPGED 81 (358)
T ss_pred CceeccCcccccccccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCcCCcccHHHHHHHHHHhcCCCCC
Confidence 5689999999988886444 7999999999999999999999999999999996 9999999999999999999966 9
Q ss_pred EEEcccccHHHHHHcCCCHHHHHHHhhcCCCCCCCCCCCccccCCCCCCccccCcccccchHHHHHHHHHhhhcCCCC-e
Q 016903 89 FVVPQYREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDA-C 167 (380)
Q Consensus 89 ~v~~~yR~~~~~l~~G~~~~~~~~e~~g~~~~~~~G~~~~~H~~~~~~~~~~~~g~lG~~lp~A~G~A~A~k~~~~~~-~ 167 (380)
|++++||+|+++|++|+++.++|++++|+.+|+|+|+++++|++++..++++.++++|+|+|+|+|+|+|.|+++.+. +
T Consensus 82 ~i~~~YR~h~~~l~~G~~~~~~~a~~~G~~~g~~kGr~~~~h~~~~~~~~~~~~~iVg~Q~~~AaG~A~a~k~~~~~~~V 161 (358)
T COG1071 82 WIFPTYRDHGHLLARGVPLKEIMAELLGKATGPCKGRGGSMHYSDKEKGFLGGSGIVGTQIPLAAGAALALKYRGTKDGV 161 (358)
T ss_pred EeecccCccccceecCCCHHHHHHHHhccccCCCCCCCCcccccccccccCCCCceecccccHHHHHHHHHHHhCCCCcE
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999555 9
Q ss_pred eEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCcCHHHHHhhcCceEEEEeCCCHHHHHHHHH
Q 016903 168 AVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVH 247 (380)
Q Consensus 168 vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~ 247 (380)
++|++|||+++||.|||+||||+.|+|||||+|+||+|+||++...+...+.++.++.+||+|+++|||+|+.+||++++
T Consensus 162 a~~~~GDGat~qG~FhEalN~A~v~klPvvf~ieNN~yAiSvp~~~q~~~~~~~~ra~aygipgv~VDG~D~~avy~~~~ 241 (358)
T COG1071 162 AVAFFGDGATNQGDFHEALNFAAVWKLPVVFVIENNQYAISVPRSRQTAAEIIAARAAAYGIPGVRVDGNDVLAVYEAAK 241 (358)
T ss_pred EEEEecCCccccchHHHHHHHHHHhcCCEEEEEecCCceeecchhhcccchhHHhhhhccCCCeEEECCcCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999888777776677789999999999999999999999999
Q ss_pred HHHHHhhccCCcEEEEEEeecCCCCCCCCCCCCCCChhhHHHHHhcCChHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Q 016903 248 AAREMAIGEGRPILIEALTYRVGHHTTSDDSTKYRPVDEIEWWRTTQDPVTRFRKWIESNGWWNGDIESELRSSVRKQIL 327 (380)
Q Consensus 248 ~a~~~ar~~~gP~lIe~~t~R~~gHs~~Dd~~~Yr~~~e~~~~~~~~DPi~~~~~~L~~~g~~t~~e~~~i~~~~~~~v~ 327 (380)
+|+++||+++||+|||+.|||++|||++|||..||+++|++.|+ .+|||.+++++|++.|+||++++++|+++++++|+
T Consensus 242 ~A~e~AR~g~GPtLIE~~tYR~~~HS~sDd~~~YRskeE~~~~~-~~DPi~r~~~~L~~~g~~see~~~~i~~e~~~~V~ 320 (358)
T COG1071 242 EAVERARAGEGPTLIEAVTYRYGGHSTSDDPSKYRSKEEVEEWK-KRDPIVRLRKYLIEAGILSEEELEAIEAEAKAEVD 320 (358)
T ss_pred HHHHHHHcCCCCEEEEEEEeecCCCCCCCCccccCCHHHHHHHh-ccChHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998 59999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCCCCccccccccCCCccHHHHHHHHH
Q 016903 328 HALQEAEKAEKPPISDLFTDVYDVSPSNLREQEHSLR 364 (380)
Q Consensus 328 ~a~~~a~~~p~p~~~~~~~~vy~~~~~~~~~~~~~l~ 364 (380)
+|+++|+++|.|+++++|++||++.|+.+.+|++.+.
T Consensus 321 ea~e~a~~~p~P~~~~~~~~Vy~~~~~~l~~q~~~~~ 357 (358)
T COG1071 321 EAVEFAEASPYPDVSELFEDVYAEGPPHLEEQREELE 357 (358)
T ss_pred HHHHHHHhCCCCChhHhhhcccccCChhHHHHHHhhc
Confidence 9999999999999999999999999999999987764
No 2
>KOG1182 consensus Branched chain alpha-keto acid dehydrogenase complex, alpha subunit [Energy production and conversion]
Probab=100.00 E-value=1.8e-84 Score=604.42 Aligned_cols=379 Identities=64% Similarity=1.081 Sum_probs=370.5
Q ss_pred CccccCCCCCCCCeeEEeCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccchhhHHHHHH
Q 016903 1 MRFISESSEERIPCYRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRISFYLTTSGEEAINIAS 80 (380)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~e~l~~~y~~M~~~R~~e~~~~~~~~~g~i~~~~~~~G~Ea~~~~~ 80 (380)
|+||.+++...+|.|||+|.||.+++++..+.++.+..++||++|++...+|..+.+.+|||+|+||+++.|+||+-+|.
T Consensus 51 l~fI~~~d~~~iPiYRV~d~~G~ii~~sqdp~~~ee~~~kmy~~M~~Ln~MD~IlYesQRQGRiSFYmT~~GEEa~higS 130 (432)
T KOG1182|consen 51 LEFIQPSDTPRIPIYRVMDADGQIIDKSQDPQLSEEVVLKMYKDMTLLNIMDRILYESQRQGRISFYMTNFGEEAIHIGS 130 (432)
T ss_pred eeecCcccCCCCceEEEecCCCcccCcccCCCcCHHHHHHHHHHHHHHHHHHHHHHHHhhcceEEEEEeccchhhhhhhh
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCCcEEEcccccHHHHHHcCCCHHHHHHHhhcCCCCCCCCCCCccccCCCCCCccccCcccccchHHHHHHHHHhh
Q 016903 81 AAAIKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALK 160 (380)
Q Consensus 81 ~~~l~~~D~v~~~yR~~~~~l~~G~~~~~~~~e~~g~~~~~~~G~~~~~H~~~~~~~~~~~~g~lG~~lp~A~G~A~A~k 160 (380)
++||.+.|+|++.||..|+++.||+++++++.+.+|+..+..+|++||+|+++++.|++..++++..++|.|+|+|+|.|
T Consensus 131 AAAL~p~Dli~gQYREaGVLlwRgftle~f~~qCyGn~~d~gkGrQMPvHyGs~elnf~tissplatqlpqAvGaaYa~k 210 (432)
T KOG1182|consen 131 AAALEPQDLIYGQYREAGVLLWRGFTLEEFMNQCYGNKSDLGKGRQMPVHYGSKELNFVTISSPLATQLPQAVGAAYALK 210 (432)
T ss_pred hhhCCcccccccccccCceEEEcCccHHHHHHHhcCCccccccccccccccCccccceEEecchhhhccchhhhhhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCC-CeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCcCHHHHHhhcCceEEEEeCCCH
Q 016903 161 MDRKD-ACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDA 239 (380)
Q Consensus 161 ~~~~~-~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~VdG~D~ 239 (380)
+++.+ ..+||++|||+.+||.+|.++|+|+..+.|+||+|-||+|+||||++++.....++.++.+||+..++|||||+
T Consensus 211 ~~~~nnac~V~yfGdG~aSEGD~HA~~NfAAtle~Pvif~CRNNG~AISTptseQyr~DGIa~kG~aYGi~sIRVDGnD~ 290 (432)
T KOG1182|consen 211 MRKKNNACAVTYFGDGAASEGDAHAAFNFAATLECPVIFFCRNNGWAISTPTSEQYRGDGIAVKGPAYGIRSIRVDGNDA 290 (432)
T ss_pred hcccCCeEEEEEecCCcccccchhhhhhHHHHhCCCEEEEEcCCCeeeccccHHHhcCCceEEeccccceEEEEecCcch
Confidence 87665 89999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhccCCcEEEEEEeecCCCCCCCCCCCCCCChhhHHHHHhcCChHHHHHHHHHHcCCCCHHHHHHHH
Q 016903 240 LAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDDSTKYRPVDEIEWWRTTQDPVTRFRKWIESNGWWNGDIESELR 319 (380)
Q Consensus 240 ~av~~a~~~a~~~ar~~~gP~lIe~~t~R~~gHs~~Dd~~~Yr~~~e~~~~~~~~DPi~~~~~~L~~~g~~t~~e~~~i~ 319 (380)
.+||.|+++|.+.+-...+|+|||+.|||.++||+|||.+.||+.+|++-|.+.++||.|||+++.++|+|+|+...+++
T Consensus 291 lAvYnA~k~ARe~av~e~rPvliEamtYRvGHHSTSDDSt~YRsadEiq~W~~~~~pisrfr~~i~~~GWw~ee~E~~~r 370 (432)
T KOG1182|consen 291 LAVYNAVKEAREMAVTEQRPVLIEAMTYRVGHHSTSDDSTAYRSADEIQYWNKSRHPISRFRKYIESNGWWSEEDESELR 370 (432)
T ss_pred HHHHHHHHHHHHHHHhccCchhhhhhhhhhccccCCCccccccchhhhhhhhcccCcHHHHHHHHHhcCCcChhhHHHHH
Confidence 99999999999999999999999999999999999999999999999999987899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCCCCCccccccccCCCccHHHHHHHHHHHHHhCCCCCCCCCC
Q 016903 320 SSVRKQILHALQEAEKAEKPPISDLFTDVYDVSPSNLREQEHSLRETIKKHPQDYPSNVP 379 (380)
Q Consensus 320 ~~~~~~v~~a~~~a~~~p~p~~~~~~~~vy~~~~~~~~~~~~~l~~~~~~~p~~~~~~~~ 379 (380)
++++++|.++++.|++-++|.+.++|+|||.++|.+|++|...|++.+++||++||+..|
T Consensus 371 k~~rk~vl~a~~~aEk~~K~~~~~lF~dVYd~~P~~L~eq~~~l~~~i~~~~e~Yp~~~~ 430 (432)
T KOG1182|consen 371 KNIRKKVLEAIAAAEKKEKPNLTELFEDVYDEMPKNLREQELELKEHIEKHPEHYPLKDF 430 (432)
T ss_pred HHHHHHHHHHHHHHhcccCCCHHHHHHHHhhhhhHhHHHHHHHHHHHHHhCcccCchhhc
Confidence 999999999999999999999999999999999999999999999999999999996543
No 3
>PLN02269 Pyruvate dehydrogenase E1 component subunit alpha
Probab=100.00 E-value=7e-81 Score=614.54 Aligned_cols=319 Identities=29% Similarity=0.477 Sum_probs=307.9
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-ccccccchhhHHHHHHHhcCCCCcEEEcccccHHHHHHcCCCHHH
Q 016903 31 VKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRI-SFYLTTSGEEAINIASAAAIKNDDFVVPQYREPGVLLWRGFSMQE 109 (380)
Q Consensus 31 ~~~~~e~l~~~y~~M~~~R~~e~~~~~~~~~g~i-~~~~~~~G~Ea~~~~~~~~l~~~D~v~~~yR~~~~~l~~G~~~~~ 109 (380)
..+++++++++|+.|+++|.||+++..++++|++ +|+|+++||||+++|++.+|+++||++++||+|+++|++|+++.+
T Consensus 25 ~~~~~~~ll~~yr~M~~~R~~e~~~~~l~~~g~i~g~~~~~~GqEA~~vg~~~aL~~~D~~~~~yR~hg~~la~G~~~~~ 104 (362)
T PLN02269 25 VETSKQELVDFFRDMYLMRRMEIAADSLYKAKLIRGFCHLYDGQEAVAVGMEAAITKEDAIITAYRDHCTHLGRGGTVLE 104 (362)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccCCCCChHHHHHHHHHhcCCCCEEEechhhHHHHHHcCCCHHH
Confidence 4789999999999999999999999999999999 699999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCCCCCCCCCCccccCCCCCCccccCcccccchHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHH
Q 016903 110 FANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFS 189 (380)
Q Consensus 110 ~~~e~~g~~~~~~~G~~~~~H~~~~~~~~~~~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A 189 (380)
+|+|++|+.+|+|+|+++++|+.+++.|+++.++++|+++|+|+|+|+|.|+++.+.+++|++|||+++||.|||+||+|
T Consensus 105 ~~ae~~g~~~g~~~GrggsmH~~~~~~~~~~~~~~vG~~~p~A~G~A~A~k~~~~~~v~v~~~GDGa~~eG~~~Ealn~A 184 (362)
T PLN02269 105 VFAELMGRKDGCSRGKGGSMHFYKKDANFYGGHGIVGAQVPLGAGLAFAQKYNKEENVAFALYGDGAANQGQLFEALNIA 184 (362)
T ss_pred HHHHHcCCCCCCCCCCCCcccccchhcCccccCchhhccccHHHHHHHHHHHhCCCCeEEEEECCCCcccCHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCCEEEEEEcCCcccccccccccCCcCHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecC
Q 016903 190 AVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRV 269 (380)
Q Consensus 190 ~~~~Lpvi~vv~NN~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t~R~ 269 (380)
+.|+||+||||+||+|+++++...+....++++++ +++|+++|||+|+.+|+++++.|++++|+ +||+|||++|||+
T Consensus 185 ~~~~lPvvfvveNN~~aist~~~~~~~~~~~~~~~--~~~p~~~VDG~D~~av~~a~~~A~~~aR~-~gP~lIe~~tyR~ 261 (362)
T PLN02269 185 ALWDLPVIFVCENNHYGMGTAEWRAAKSPAYYKRG--DYVPGLKVDGMDVLAVKQACKFAKEHALS-NGPIVLEMDTYRY 261 (362)
T ss_pred hccCcCEEEEEeCCCEeccCchhhhccchHHHHhh--cCCCeEEECCCCHHHHHHHHHHHHHHHHh-CCCEEEEEecCcC
Confidence 99999999999999999999988887777777654 68999999999999999999999999999 9999999999999
Q ss_pred CCCCCCCCCCCCCChhhHHHHHhcCChHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCccccccc
Q 016903 270 GHHTTSDDSTKYRPVDEIEWWRTTQDPVTRFRKWIESNGWWNGDIESELRSSVRKQILHALQEAEKAEKPPISDLFTDVY 349 (380)
Q Consensus 270 ~gHs~~Dd~~~Yr~~~e~~~~~~~~DPi~~~~~~L~~~g~~t~~e~~~i~~~~~~~v~~a~~~a~~~p~p~~~~~~~~vy 349 (380)
+|||++|++..||+++|++.|++.+|||.+|+++|+++|+||++++++|+++++++|++++++|+++|.|+++++|+|||
T Consensus 262 ~gHs~~D~~~~YR~~~E~~~~~~~~DPi~~~~~~L~~~g~~te~e~~~i~~e~~~~v~~a~~~A~~~p~P~~~~~~~~vy 341 (362)
T PLN02269 262 HGHSMSDPGSTYRTRDEISGVRQERDPIERVRKLLLAHELATEAELKDIEKEIRKEVDDAVAKAKESPMPDPSELFTNVY 341 (362)
T ss_pred CCcCCCCCCcccCCHHHHHHHHhCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHhhcc
Confidence 99999998789999999999974599999999999999999999999999999999999999999999999999999999
Q ss_pred cCC
Q 016903 350 DVS 352 (380)
Q Consensus 350 ~~~ 352 (380)
+++
T Consensus 342 ~~~ 344 (362)
T PLN02269 342 VKG 344 (362)
T ss_pred cCC
Confidence 965
No 4
>CHL00149 odpA pyruvate dehydrogenase E1 component alpha subunit; Reviewed
Probab=100.00 E-value=9.4e-80 Score=604.33 Aligned_cols=321 Identities=27% Similarity=0.435 Sum_probs=309.9
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-ccccccchhhHHHHHHHhcCCCCcEEEcccccHHHHHHcCCCH
Q 016903 29 SFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRI-SFYLTTSGEEAINIASAAAIKNDDFVVPQYREPGVLLWRGFSM 107 (380)
Q Consensus 29 ~~~~~~~e~l~~~y~~M~~~R~~e~~~~~~~~~g~i-~~~~~~~G~Ea~~~~~~~~l~~~D~v~~~yR~~~~~l~~G~~~ 107 (380)
..+.+|+++++++|+.|+++|.||+++.+++++|++ +|+|+++||||+++|++.+|+++|+++++||+|+++|++|+++
T Consensus 13 ~~~~~~~~~ll~~y~~M~~~R~~e~~~~~~~~~g~i~g~~~~~~GqEa~~vg~~~al~~~D~~~~~yR~~~~~la~G~~~ 92 (341)
T CHL00149 13 NENNINSMWLLVLYEDMLLGRNFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGVIKLLAETDYVCSTYRDHVHALSKGVPP 92 (341)
T ss_pred cccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccCCCCChHHHHHHHHHhCCCCCEEEcccccHHHHHHcCCCH
Confidence 456799999999999999999999999999999999 6999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCCCCCCCCCCCccccCCCCCCccccCcccccchHHHHHHHHHhhhcC-------CCCeeEEEeCccccCcc
Q 016903 108 QEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDR-------KDACAVTYFGDGGTSEG 180 (380)
Q Consensus 108 ~~~~~e~~g~~~~~~~G~~~~~H~~~~~~~~~~~~g~lG~~lp~A~G~A~A~k~~~-------~~~~vv~~~GDG~~~eG 180 (380)
.++|++++|+.+|+|+|+++++|+.+++.++++.+|+||.++|+|+|+|+|.|+++ ++++|+|++|||++++|
T Consensus 93 ~~~~ae~~g~~~g~~~Gr~gs~H~~~~~~~~~~~~g~lG~~lp~AvGaa~A~k~~~~~~~~~~~~~vvv~~~GDGa~~~G 172 (341)
T CHL00149 93 KNVMAELFGKETGCSRGRGGSMHIFSAPHNFLGGFAFIGEGIPIALGAAFQSIYRQQVLKEVQPLRVTACFFGDGTTNNG 172 (341)
T ss_pred HHHHHHHcCCCCCCCCCCCCCccccchhcCccCCChhhhccHHHHHHHHHHHHHhccccccCCCCCEEEEEeCCchhhhc
Confidence 99999999999999999999999999888999999999999999999999999887 58999999999999999
Q ss_pred hHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCcCHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcE
Q 016903 181 DFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPI 260 (380)
Q Consensus 181 ~~~Eal~~A~~~~Lpvi~vv~NN~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~ 260 (380)
.+||+||+|++|+||+||||+||+|+++++...++...++++++++||+++++|||+|+.+++.++++|++++|++++|+
T Consensus 173 ~~~Ealn~A~~~~LPvifvv~NN~~~i~~~~~~~~~~~d~a~~a~a~G~~~~~Vdg~d~~av~~a~~~A~~~ar~~~gP~ 252 (341)
T CHL00149 173 QFFECLNMAVLWKLPIIFVVENNQWAIGMAHHRSTSIPEIHKKAEAFGLPGIEVDGMDVLAVREVAKEAVERARQGDGPT 252 (341)
T ss_pred HHHHHHHHHhhcCCCEEEEEEeCCeeeecchhheeCCccHHHHHHhCCCCEEEEeCCCHHHHHHHHHHHHHHHHhCCCCE
Confidence 99999999999999999999999999999887777778999999999999999999999999999999999999999999
Q ss_pred EEEEEeecCCCCCCCCCCCCCCChhhHHHHHhcCChHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Q 016903 261 LIEALTYRVGHHTTSDDSTKYRPVDEIEWWRTTQDPVTRFRKWIESNGWWNGDIESELRSSVRKQILHALQEAEKAEKPP 340 (380)
Q Consensus 261 lIe~~t~R~~gHs~~Dd~~~Yr~~~e~~~~~~~~DPi~~~~~~L~~~g~~t~~e~~~i~~~~~~~v~~a~~~a~~~p~p~ 340 (380)
|||+.|||++|||++|+ ..||+++|++.|+ ++|||.+|+++|+++|++|++++++|+++++++|++++++|+++|.|+
T Consensus 253 lIev~tyR~~gHs~~D~-~~YR~~~e~~~~~-~~DPi~~~~~~L~~~g~~~~~~~~~i~~e~~~~v~~a~~~a~~~p~p~ 330 (341)
T CHL00149 253 LIEALTYRFRGHSLADP-DELRSKQEKEAWV-ARDPIKKLKSYIIDNELASQKELNKIQREVKIEIEQAVQFAISSPEPN 330 (341)
T ss_pred EEEEEEecCCCcCCCCC-ccCCCHHHHHHHh-cCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 99999999999999976 5799999999998 699999999999999999999999999999999999999999999999
Q ss_pred CCccccccccC
Q 016903 341 ISDLFTDVYDV 351 (380)
Q Consensus 341 ~~~~~~~vy~~ 351 (380)
++++|+|||++
T Consensus 331 ~~~~~~~vy~~ 341 (341)
T CHL00149 331 ISDLKKYLFAD 341 (341)
T ss_pred HHHHHhhcccC
Confidence 99999999974
No 5
>TIGR03181 PDH_E1_alph_x pyruvate dehydrogenase E1 component, alpha subunit. Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc.
Probab=100.00 E-value=1.3e-79 Score=604.40 Aligned_cols=341 Identities=42% Similarity=0.679 Sum_probs=323.4
Q ss_pred CeeEEeCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccchhhHHHHHHHhcCCCCcEEEc
Q 016903 13 PCYRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRISFYLTTSGEEAINIASAAAIKNDDFVVP 92 (380)
Q Consensus 13 ~~~~~~~~~g~~~~~~~~~~~~~e~l~~~y~~M~~~R~~e~~~~~~~~~g~i~~~~~~~G~Ea~~~~~~~~l~~~D~v~~ 92 (380)
|.|||+++||.+.++.-.+.+++++++++|++|+++|.||+++..++++|+++|+|+++||||+++|++.+|+++|++++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~y~~m~~~R~~e~~~~~~~~~g~i~~~~~~~GqEa~~vg~~~al~~~D~~~~ 80 (341)
T TIGR03181 1 ELVQVLDEDGNVVDPEPAPDLSDEELVELYRDMVLTRRFDTKALALQRQGRLGTYAPNLGQEAAQVGSALALRKDDWVFP 80 (341)
T ss_pred CceEEECCCCCcCCccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCceecccCCCChHHHHHHHHHHcCCCCEEEc
Confidence 67999999998766543467999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccHHHHHHcCCCHHHHHHHhhcCCCCCCCCCCCccccCCCCCCccccCcccccchHHHHHHHHHhhhcCCCCeeEEEe
Q 016903 93 QYREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYF 172 (380)
Q Consensus 93 ~yR~~~~~l~~G~~~~~~~~e~~g~~~~~~~G~~~~~H~~~~~~~~~~~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~ 172 (380)
+||+|+++|++|+++.++|++++|+.+|. + .++..|+++.+++||.++|.|+|+|+|.|+.+++++|+|++
T Consensus 81 ~yR~h~~~l~~G~~~~~~~ae~~g~~~g~--------~-~~~~~~~~g~~~~vG~~lp~AiGaAla~k~~~~~~~vv~~~ 151 (341)
T TIGR03181 81 SYRDHAAMLARGVPLVEILLYWRGDERGS--------W-DPEGVNILPPNIPIGTQYLHAAGVAYALKLRGEDNVAVTYF 151 (341)
T ss_pred chhhHHHHHHcCCCHHHHHHHhcCcCcCC--------C-CchhcCccCCCchHhcchhHHHhHHHHHHhhCCCCEEEEEe
Confidence 99999999999999999999999986542 1 13568999999999999999999999999999999999999
Q ss_pred CccccCcchHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCcCHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHH
Q 016903 173 GDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREM 252 (380)
Q Consensus 173 GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~a~~~ 252 (380)
|||++++|.++|+||+|++|+||+||||+||+|+++++...+...+++++++++||+++++|||+|..+|+++++.|+++
T Consensus 152 GDGa~~~g~~~EaL~tA~~~~LPvi~Vv~NN~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~Vdg~d~~av~~a~~~A~~~ 231 (341)
T TIGR03181 152 GDGGTSEGDFYEALNFAGVFKAPVVFFVQNNQWAISVPRSKQTAAPTLAQKAIAYGIPGVQVDGNDVLAVYAVTKEAVER 231 (341)
T ss_pred cCCccccChHHHHHHHHhccCCCEEEEEECCCCccccchhhhhCCcCHHHHHhhCCCCEEEECCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999988777667789999999999999999999999999999999999
Q ss_pred hhccCCcEEEEEEeecCCCCCCCCCCCCCCChhhHHHHHhcCChHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHH
Q 016903 253 AIGEGRPILIEALTYRVGHHTTSDDSTKYRPVDEIEWWRTTQDPVTRFRKWIESNGWWNGDIESELRSSVRKQILHALQE 332 (380)
Q Consensus 253 ar~~~gP~lIe~~t~R~~gHs~~Dd~~~Yr~~~e~~~~~~~~DPi~~~~~~L~~~g~~t~~e~~~i~~~~~~~v~~a~~~ 332 (380)
+|++++|+||++.|||++|||++|++..||+++|++.|+ ++|||.+|+++|+++|++|++++++|+++++++|++++++
T Consensus 232 a~~~~gP~lIev~t~R~~gH~~~D~~~~YR~~~e~~~~~-~~Dpi~~~~~~L~~~g~~~~~e~~~i~~~~~~~v~~a~~~ 310 (341)
T TIGR03181 232 ARSGGGPTLIEAVTYRLGPHTTADDPTRYRTKEEEEEWR-KKDPILRLRKYLERKGLWDEEQEEALEEEAEAEVAEAVAE 310 (341)
T ss_pred HHcCCCCEEEEEEeecCCCCCCCCCCccCCCHHHHHHHh-cCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999998999999999998 5999999999999999999999999999999999999999
Q ss_pred HHhCCCCCCCccccccccCCCccHHHHHHHH
Q 016903 333 AEKAEKPPISDLFTDVYDVSPSNLREQEHSL 363 (380)
Q Consensus 333 a~~~p~p~~~~~~~~vy~~~~~~~~~~~~~l 363 (380)
|+++|.|+++++|+|||+++||++++|++.|
T Consensus 311 a~~~p~P~~~~~~~~vy~~~~~~~~~~~~~~ 341 (341)
T TIGR03181 311 ALALPPPPVDDIFDHVYAELPPELEEQRAEL 341 (341)
T ss_pred HHhCCCCCHHHHHhhcccCCCHHHHHHHHhC
Confidence 9999999999999999999999999998764
No 6
>TIGR03182 PDH_E1_alph_y pyruvate dehydrogenase E1 component, alpha subunit. Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc.
Probab=100.00 E-value=9.2e-79 Score=592.59 Aligned_cols=314 Identities=31% Similarity=0.541 Sum_probs=305.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-ccccccchhhHHHHHHHhcCCCCcEEEcccccHHHHHHcCCCHHHHHHH
Q 016903 35 EGVAIKMYNDMVTLQTMDTIFYEAQRQGRI-SFYLTTSGEEAINIASAAAIKNDDFVVPQYREPGVLLWRGFSMQEFANQ 113 (380)
Q Consensus 35 ~e~l~~~y~~M~~~R~~e~~~~~~~~~g~i-~~~~~~~G~Ea~~~~~~~~l~~~D~v~~~yR~~~~~l~~G~~~~~~~~e 113 (380)
+++++++|++|+++|.||+++.+++++|++ +|+|+++||||+++|++.+|+++||++++||+|+++|++|++++++|++
T Consensus 1 ~~~l~~~y~~M~~~R~~d~~~~~l~~~g~~~~~~~~~~GqEa~~vg~~~al~~~D~~~~~yR~~~~~la~G~~~~~~~~~ 80 (315)
T TIGR03182 1 KEELLELYRDMLLIRRFEEKAGQLYGMGKIGGFCHLYIGQEAVAVGLIAALKPDDYVITSYRDHGHALARGVPPKEVMAE 80 (315)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHhCCccccccCCCCChHHHHHHHHHhCCCCCEEEechhhHHHHHHcCCCHHHHHHH
Confidence 478999999999999999999999999999 5899999999999999999999999999999999999999999999999
Q ss_pred hhcCCCCCCCCCCCccccCCCCCCccccCcccccchHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcC
Q 016903 114 CFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTE 193 (380)
Q Consensus 114 ~~g~~~~~~~G~~~~~H~~~~~~~~~~~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~ 193 (380)
++|+.+|+|+|+++++|+.+++.|+++.+|+||+++|+|+|+|+|.|+++++++|||++|||++++|.+||+||+|++++
T Consensus 81 ~~g~~~g~~~Gr~g~~h~~~~~~~~~~~~g~~G~~lp~AiGaa~A~~~~~~~~~vv~~~GDGa~~~g~~~ealn~A~~~~ 160 (315)
T TIGR03182 81 LTGRATGCSKGKGGSMHMFDREKNFYGGHGIVGAQVPLATGLAFANKYRGNDNVTACFFGDGAANQGQFYESFNMAALWK 160 (315)
T ss_pred HcCCCCCCCCCCCCCCCcCchhhCcccCcCcccccccHHHHHHHHHHHhCCCCEEEEEeCCCcccccHHHHHHHHhhccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEEEcCCcccccccccccCCcCHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCCCCC
Q 016903 194 APVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHT 273 (380)
Q Consensus 194 Lpvi~vv~NN~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t~R~~gHs 273 (380)
||+||||.||+|+++++...+.+.+++++++++||+++++|||+|+.++++++++|++++|++++|+|||+.|||++|||
T Consensus 161 lPvi~vv~NN~yg~s~~~~~~~~~~~~a~~A~a~G~~~~~Vdg~d~~av~~a~~~A~~~ar~~~gP~lIe~~t~R~~gHs 240 (315)
T TIGR03182 161 LPVIFVIENNLYAMGTSVERSSSVTDLYKRGESFGIPGERVDGMDVLAVREAAKEAVERARSGKGPILLEMKTYRFRGHS 240 (315)
T ss_pred cCEEEEEEcCCccccCCHHHHhCCcCHHHHHHhCCCCEEEECCCCHHHHHHHHHHHHHHHHccCCCEEEEEeCCcCCCCC
Confidence 99999999999999999887777789999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCChhhHHHHHhcCChHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcccccccc
Q 016903 274 TSDDSTKYRPVDEIEWWRTTQDPVTRFRKWIESNGWWNGDIESELRSSVRKQILHALQEAEKAEKPPISDLFTDVYD 350 (380)
Q Consensus 274 ~~Dd~~~Yr~~~e~~~~~~~~DPi~~~~~~L~~~g~~t~~e~~~i~~~~~~~v~~a~~~a~~~p~p~~~~~~~~vy~ 350 (380)
++|++ .||+++|++.|+ ++|||.+|+++|+++|+||++++++|+++++++|++++++|++.|.|+++++|+|||+
T Consensus 241 ~~D~~-~Yr~~~e~~~~~-~~dPi~~~~~~L~~~g~~~~~~~~~~~~~~~~~v~~a~~~a~~~p~p~~~~~~~~vy~ 315 (315)
T TIGR03182 241 MSDPA-KYRSKEEVEEWR-KRDPIEKLKARLIEQGIASEEELKEIDKEVRAEVEEAVEFAENSPEPPVEELYTDVYA 315 (315)
T ss_pred CCCcc-ccCCHHHHHHHH-hcCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHhhccC
Confidence 99876 799999999998 6999999999999999999999999999999999999999999999999999999996
No 7
>PLN02374 pyruvate dehydrogenase (acetyl-transferring)
Probab=100.00 E-value=2.6e-77 Score=599.87 Aligned_cols=322 Identities=26% Similarity=0.439 Sum_probs=310.9
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-ccccccchhhHHHHHHHhcCCCCcEEEcccccHHHHHHcCCCHH
Q 016903 30 FVKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRI-SFYLTTSGEEAINIASAAAIKNDDFVVPQYREPGVLLWRGFSMQ 108 (380)
Q Consensus 30 ~~~~~~e~l~~~y~~M~~~R~~e~~~~~~~~~g~i-~~~~~~~G~Ea~~~~~~~~l~~~D~v~~~yR~~~~~l~~G~~~~ 108 (380)
.+.+++++++++|++|+++|.||+++..++++|++ +|+|+++||||+++|++.+|+++||++++||+|+++|++|++++
T Consensus 80 ~~~ls~e~ll~lyr~M~~~R~fEe~~~~l~~~Gki~g~~h~~~GqEA~~vg~~~aL~~~D~v~~~yR~h~~~La~G~~~~ 159 (433)
T PLN02374 80 DLLVTREEGLELYEDMVLGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKDDSVVSTYRDHVHALSKGVPAR 159 (433)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCcceeccCCCCCcHHHHHHHHHHcCCCCEEEccCcChHHhhhcCCCHH
Confidence 46889999999999999999999999999999999 79999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCCCCCCCCCCCccccCCCCCCccccCcccccchHHHHHHHHHhhhcC-------CCCeeEEEeCccccCcch
Q 016903 109 EFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDR-------KDACAVTYFGDGGTSEGD 181 (380)
Q Consensus 109 ~~~~e~~g~~~~~~~G~~~~~H~~~~~~~~~~~~g~lG~~lp~A~G~A~A~k~~~-------~~~~vv~~~GDG~~~eG~ 181 (380)
++|+|++|+.+|+|+|+++++|+.+++.++++.+++||.++|+|+|+|+|.|+++ ++++|||++|||++++|.
T Consensus 160 ~~mael~Gk~~g~~~GrggsmH~~~~~~~~~g~~g~lG~~lP~AvGaA~A~k~~~~~~~~~~~~~vvv~~~GDGa~~eG~ 239 (433)
T PLN02374 160 AVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPVATGAAFSSKYRREVLKEESCDDVTLAFFGDGTCNNGQ 239 (433)
T ss_pred HHHHHHcCCCCCCCCCCCCcCccCchhhCCCCCceeccCchhHHHHHHHHHHHhhccccccCCCCEEEEEECCCccccCh
Confidence 9999999999999999999999999999999999999999999999999999885 488999999999999999
Q ss_pred HHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCcCHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEE
Q 016903 182 FHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPIL 261 (380)
Q Consensus 182 ~~Eal~~A~~~~Lpvi~vv~NN~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~l 261 (380)
|||+||+|++|+|||||||+||+|+++++...++..+++++++++||+++++|||+|+.+|++++++|++++|++++|+|
T Consensus 240 f~EaLn~A~~~~LPvIfVV~NN~yaig~~~~~~t~~~dia~~A~a~G~~~~~VDG~D~~av~~a~~~A~~~Ar~g~gP~L 319 (433)
T PLN02374 240 FFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPEIWKKGPAFGMPGVHVDGMDVLKVREVAKEAIERARRGEGPTL 319 (433)
T ss_pred HHHHHHHHHHhCCCEEEEEeCCCEeecceeeeccCCCCHHHHHHhcCCcEEEECCCCHHHHHHHHHHHHHHHHHcCCCEE
Confidence 99999999999999999999999999998887777789999999999999999999999999999999999999999999
Q ss_pred EEEEeecCCCCCCCCCCCCCCChhhHHHHHhcCChHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCC
Q 016903 262 IEALTYRVGHHTTSDDSTKYRPVDEIEWWRTTQDPVTRFRKWIESNGWWNGDIESELRSSVRKQILHALQEAEKAEKPPI 341 (380)
Q Consensus 262 Ie~~t~R~~gHs~~Dd~~~Yr~~~e~~~~~~~~DPi~~~~~~L~~~g~~t~~e~~~i~~~~~~~v~~a~~~a~~~p~p~~ 341 (380)
||+.|||++|||++|++ .||+++|++.|+ ++|||.+++++|+++|++|++++++|+++++++|++++++|+++|.|++
T Consensus 320 Ie~~tyR~~GHs~~D~~-~YR~~~e~~~~~-~~DPi~~~~~~L~~~gi~te~e~~~i~~~~~~~v~~a~~~A~~~p~P~~ 397 (433)
T PLN02374 320 VECETYRFRGHSLADPD-ELRDPAEKAHYA-ARDPIAALKKYLIENGLATEAELKAIEKKIDEVVEDAVEFADASPLPPR 397 (433)
T ss_pred EEEEEEecCCcCCCCcc-ccCCHHHHHHHH-cCCcHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCCH
Confidence 99999999999999865 699999999998 6999999999999999999999999999999999999999999999999
Q ss_pred CccccccccCCC
Q 016903 342 SDLFTDVYDVSP 353 (380)
Q Consensus 342 ~~~~~~vy~~~~ 353 (380)
+++|++||+++.
T Consensus 398 ~~~~~~vy~~~~ 409 (433)
T PLN02374 398 SQLLENVFADPK 409 (433)
T ss_pred HHHHhccccCCc
Confidence 999999999763
No 8
>KOG0225 consensus Pyruvate dehydrogenase E1, alpha subunit [Energy production and conversion]
Probab=100.00 E-value=6.6e-78 Score=565.14 Aligned_cols=322 Identities=30% Similarity=0.504 Sum_probs=310.9
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-ccccccchhhHHHHHHHhcCCCCcEEEcccccHHHHHHcCCCH
Q 016903 29 SFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRI-SFYLTTSGEEAINIASAAAIKNDDFVVPQYREPGVLLWRGFSM 107 (380)
Q Consensus 29 ~~~~~~~e~l~~~y~~M~~~R~~e~~~~~~~~~g~i-~~~~~~~G~Ea~~~~~~~~l~~~D~v~~~yR~~~~~l~~G~~~ 107 (380)
....+++++++++|++|+++|.+|..+..+|++++| +|+|++.||||+++|+-+++.+.|.++++||+|++.+.+|.++
T Consensus 52 ~s~~~t~ee~L~~Y~~M~~~RrmE~aad~lYK~k~IRGFCHLy~GQEAvavGme~ait~~D~iItsYR~Hg~~~~~G~S~ 131 (394)
T KOG0225|consen 52 TSVELTKEEALKYYRDMQTIRRMELAADQLYKAKKIRGFCHLYDGQEAVAVGMEAAITKSDSIITSYRCHGWTYLRGVSV 131 (394)
T ss_pred ceEEecHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhceeeeecccHHHHHHHHHHhccCCCceEEEeeeeeEEeecCccH
Confidence 345689999999999999999999999999999999 6999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCCCCCCCCCCCccccCCCCCCccccCcccccchHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHH
Q 016903 108 QEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALN 187 (380)
Q Consensus 108 ~~~~~e~~g~~~~~~~G~~~~~H~~~~~~~~~~~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~ 187 (380)
.++|+|++|+.+|+|+|.|++||+..+ +|++.+|++|.|+|++.|+|+|.|+++.+.+++++.|||+.+||+++|++|
T Consensus 132 ~~v~aEL~Gr~~Gc~kGKGGSMHmy~k--~FyGGnGIVGAQiPLGaGia~A~kY~~~~~v~~alYGDGAaNQGQ~fEa~N 209 (394)
T KOG0225|consen 132 REVLAELMGRQAGCSKGKGGSMHMYAK--NFYGGNGIVGAQIPLGAGIAFAQKYNREDAVCFALYGDGAANQGQVFEAFN 209 (394)
T ss_pred HHHHHHHhccccccccCCCcceeeecc--cccCccceeccCCCccccHHHHHHhccCCceEEEEeccccccchhHHHHhh
Confidence 999999999999999999999999864 599999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCEEEEEEcCCcccccccccccCCcCHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEee
Q 016903 188 FSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTY 267 (380)
Q Consensus 188 ~A~~~~Lpvi~vv~NN~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t~ 267 (380)
+|+.|+||+||||+||.|++.|+..+....+++.++. .| +|+++|||+|+.+|++|.+.|.+++++++||+++|+.||
T Consensus 210 MA~LW~LP~IFvCENN~yGMGTs~~Rasa~teyykRG-~y-iPGl~VdGmdvlaVr~a~KfA~~~~~~g~GPilmE~~TY 287 (394)
T KOG0225|consen 210 MAALWKLPVIFVCENNHYGMGTSAERASASTEYYKRG-DY-IPGLKVDGMDVLAVREATKFAKKYALEGKGPILMEMDTY 287 (394)
T ss_pred HHHHhCCCEEEEEccCCCccCcchhhhhcChHHHhcc-CC-CCceEECCcchhhHHHHHHHHHHHHhcCCCCEEEEEeee
Confidence 9999999999999999999999999999899999999 45 999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCCCCCChhhHHHHHhcCChHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCccccc
Q 016903 268 RVGHHTTSDDSTKYRPVDEIEWWRTTQDPVTRFRKWIESNGWWNGDIESELRSSVRKQILHALQEAEKAEKPPISDLFTD 347 (380)
Q Consensus 268 R~~gHs~~Dd~~~Yr~~~e~~~~~~~~DPi~~~~~~L~~~g~~t~~e~~~i~~~~~~~v~~a~~~a~~~p~p~~~~~~~~ 347 (380)
|++|||.+|+...||+.||++..+.++|||..++++|++.++.|++|+++|+++++++|++++++|+++|.|++++|+.|
T Consensus 288 Ry~GHSmSDPg~sYRtReEiq~vR~kRDPI~~lk~~li~~~late~ELKai~k~irkeVdeav~~A~~~p~p~~~eL~~d 367 (394)
T KOG0225|consen 288 RYHGHSMSDPGTSYRTREEIQEVRQKRDPIEGLKKRLIELGLATEEELKAIDKEIRKEVDEAVAFATASPEPEPSELFTD 367 (394)
T ss_pred eecccccCCCCcccchHHHHHHHHhccChHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHH
Confidence 99999999987999999999999878999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCc
Q 016903 348 VYDVSPS 354 (380)
Q Consensus 348 vy~~~~~ 354 (380)
||...+.
T Consensus 368 vy~~~~~ 374 (394)
T KOG0225|consen 368 VYVKGTG 374 (394)
T ss_pred hhccCCC
Confidence 9997643
No 9
>PF00676 E1_dh: Dehydrogenase E1 component; InterPro: IPR001017 This entry includes a number of dehydrogenases all of which use thiamine pyrophosphate as a cofactor and are members of a multienzyme complex. Pyruvate dehydrogenase (1.2.4.1 from EC), a component of the multienzyme pyruvate dehydrogenase complex; 2-oxoglutarate dehydrogenase (1.2.4.2 from EC), a component of the multienzyme 2-oxoglutarate dehydrogenase which contains multiple copies of three enzymatic components: 2-oxoglutarate dehydrogenase (E1), dihydrolipoamide succinyltransferase (E2) and lipoamide dehydrogenase (E3); and 2-oxoisovalerate dehydrogenase (1.2.4.4 from EC), a component of the multienzyme branched-chain alpha-keto dehydrogenase complex all belong to this family.; GO: 0016624 oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor, 0008152 metabolic process; PDB: 1X7Y_A 1V1M_A 1X7W_A 1OLU_A 2J9F_A 2BEW_A 1V11_A 2BFE_A 1U5B_A 2BEU_A ....
Probab=100.00 E-value=1.3e-73 Score=552.58 Aligned_cols=300 Identities=39% Similarity=0.654 Sum_probs=274.0
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCcccccccchhhHHHHHHHhcCCCCcEEEcccccHHHHHHcCCCHHHHHHHhhcCCCCC
Q 016903 42 YNDMVTLQTMDTIFYEAQRQGRISFYLTTSGEEAINIASAAAIKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKADY 121 (380)
Q Consensus 42 y~~M~~~R~~e~~~~~~~~~g~i~~~~~~~G~Ea~~~~~~~~l~~~D~v~~~yR~~~~~l~~G~~~~~~~~e~~g~~~~~ 121 (380)
|+.|+..|..|.++..+.++|+.+|+|++.||||++++++.+|+++||++++||+|+++|++|+++.++|++++|+..+.
T Consensus 1 y~~m~~~r~~d~~~~~~~~~~~~g~~~~~~GqEa~~v~~~~~l~~~D~v~~~yR~~~~~la~g~~~~~~~~e~~g~~~g~ 80 (300)
T PF00676_consen 1 YRMMLIRRFEDERARKLQRQGRFGFYHLSAGQEAIQVAAAAALRPGDWVFPYYRDHGHALARGIDLEEIFAELLGKAKGH 80 (300)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSSSCTT-TTTCHHHHHHHHHHSCTTSEEEECSTTHHHHHHTTT-HHHHHHHHHTBTTST
T ss_pred CchHHHHHHHHHHHHHHhhCCCeEEecchHHHHHHHHHHHHhccCCCEEEecccchhhhhhccccccchhHHhcCcccCC
Confidence 67777777777777777788888999999999999999999999999999999999999999999999999999999776
Q ss_pred CCCCCCccccCCCCCCccccCcccccchHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEE
Q 016903 122 GKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICR 201 (380)
Q Consensus 122 ~~G~~~~~H~~~~~~~~~~~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~ 201 (380)
+.|+. +.|...+..++++.++++|.++|+|+|+|+|.|+++.+.+++|++|||+++||.|||+||+|+.|+|||||||+
T Consensus 81 ~g~~~-~~~~~~~~~~~~~~~~~vg~~~p~a~G~A~a~k~~~~~~v~v~~~GDga~~qG~~~EalN~A~~~~lPvifvve 159 (300)
T PF00676_consen 81 GGGRH-PLHFSDKGLNILGASSPVGAQVPIAAGVALAIKYRGKDGVVVCFFGDGATSQGDFHEALNLAALWKLPVIFVVE 159 (300)
T ss_dssp TTTGC-TTEEEBTTTTBEEEESSTTTHHHHHHHHHHHHHHTTSSEEEEEEEETGGGGSHHHHHHHHHHHHTTTSEEEEEE
T ss_pred CCCcc-ccccccccceeeeccccccccCccccchhHhhhhcCCceeEEEEecCcccccCccHHHHHHHhhccCCeEEEEe
Confidence 66666 68877777889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcccccccccccCCcCHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCCCCCCCCCCCCC
Q 016903 202 NNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDDSTKY 281 (380)
Q Consensus 202 NN~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t~R~~gHs~~Dd~~~Y 281 (380)
||+|++|++...+++..+++++|++||+++++|||+|+.+|++++++|++++|+++||+|||++|||++|||++|||..|
T Consensus 160 NN~~aist~~~~~~~~~~~~~~a~~~gip~~~VDG~D~~av~~a~~~A~~~~R~g~gP~lie~~tyR~~gHs~~Dd~~~y 239 (300)
T PF00676_consen 160 NNQYAISTPTEEQTASPDIADRAKGYGIPGIRVDGNDVEAVYEAAKEAVEYARAGKGPVLIEAVTYRLRGHSESDDPTFY 239 (300)
T ss_dssp EESEETTEEHHHHCSSSTSGGGGGGTTSEEEEEETTSHHHHHHHHHHHHHHHHTTT--EEEEEEE--SS-SSTTSCGGGT
T ss_pred cCCcccccCccccccccchhhhhhccCCcEEEECCEeHHHHHHHHHHHHHHHhcCCCCEEEEEeeccCCCCCCCCCcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChhhHHHHHhcCChHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCC
Q 016903 282 RPVDEIEWWRTTQDPVTRFRKWIESNGWWNGDIESELRSSVRKQILHALQEAEKAEKPPIS 342 (380)
Q Consensus 282 r~~~e~~~~~~~~DPi~~~~~~L~~~g~~t~~e~~~i~~~~~~~v~~a~~~a~~~p~p~~~ 342 (380)
|+++|++.|++.+|||.+++++|++.|++|++++++|+++++++|++++++|+++|.|+||
T Consensus 240 r~~~e~~~~~~~~DPi~~~~~~L~~~g~~t~~~~~~i~~e~~~~v~~a~~~a~~~p~p~~e 300 (300)
T PF00676_consen 240 RSPEEYEEWWKKRDPIKRFRRYLIEEGVLTEEELDAIEAEIKAEVEEAVEFAEASPEPDPE 300 (300)
T ss_dssp SHHHHHHHHHHCT-HHHHHHHHHHHTTSS-HHHHHHHHHHHHHHHHHHHHHHHHSHBC-G-
T ss_pred CCHHHHHHHHhcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCC
Confidence 9999998887667999999999999999999999999999999999999999999999986
No 10
>cd02000 TPP_E1_PDC_ADC_BCADC Thiamine pyrophosphate (TPP) family, E1 of PDC_ADC_BCADC subfamily, TPP-binding module; composed of proteins similar to the E1 components of the human pyruvate dehydrogenase complex (PDC), the acetoin dehydrogenase complex (ADC) and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC). PDC catalyzes the irreversible oxidative decarboxylation of pyruvate to produce acetyl-CoA in the bridging step between glycolysis and the citric acid cycle. ADC participates in the breakdown of acetoin while BCADC participates in the breakdown of branched chain amino acids. BCADC catalyzes the oxidative decarboxylation of 4-methyl-2-oxopentanoate, 3-methyl-2-oxopentanoate and 3-methyl-2-oxobutanoate (branched chain 2-oxo acids derived from the transamination of leucine, valine and isoleucine).
Probab=100.00 E-value=4.2e-72 Score=541.47 Aligned_cols=292 Identities=42% Similarity=0.733 Sum_probs=284.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCcc-cccccchhhHHHHHHHhcCCCCcEEEcccccHHHHHHcCCCHHHHHHHhhcCCC
Q 016903 41 MYNDMVTLQTMDTIFYEAQRQGRIS-FYLTTSGEEAINIASAAAIKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKA 119 (380)
Q Consensus 41 ~y~~M~~~R~~e~~~~~~~~~g~i~-~~~~~~G~Ea~~~~~~~~l~~~D~v~~~yR~~~~~l~~G~~~~~~~~e~~g~~~ 119 (380)
+|++|+++|.||+++.+++++|++. |+|++.||||+++|++.+|+++|+++++||+|+++|++|+++.++|+|++|+.+
T Consensus 1 ~y~~m~~~R~~e~~~~~~~~~g~~~~~~~~~~GqEa~~vg~~~~l~~~D~~~~~yR~~~~~la~G~~~~~~~~e~~g~~~ 80 (293)
T cd02000 1 LYRTMVLIRRFDERLLELYRQGKIGGFYHLSIGQEAVAVGVAAALRPGDWVFPTYRDHGHALARGVDLKEMLAELFGKET 80 (293)
T ss_pred CHHHHHHHHHHHHHHHHHHHCCccccccCCCCChHHHHHHHHHHCCCCCEEEecchhHHHHHHcCCCHHHHHHHHcCCCC
Confidence 5999999999999999999999997 599999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCccccCCCCCCccccCcccccchHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEE
Q 016903 120 DYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFI 199 (380)
Q Consensus 120 ~~~~G~~~~~H~~~~~~~~~~~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~v 199 (380)
|+++|+++++|+.++..++++.+|+||+++|+|+|+|+|.|+.+++++|||++|||++++|.++|+||+|++++||+|||
T Consensus 81 g~~~G~~g~~h~~~~~~~~~~~~g~lG~~~p~a~G~a~a~k~~~~~~~vv~~~GDGa~~~g~~~E~l~~A~~~~lPvi~v 160 (293)
T cd02000 81 GPCKGRGGSMHIGDKEKNFFGGNGIVGGQVPLAAGAALALKYRGEDRVAVCFFGDGATNEGDFHEALNFAALWKLPVIFV 160 (293)
T ss_pred CCCCCCCCCCCCCchhcCccccccccccchhHHHHHHHHHHHhCCCCEEEEEeCCCccccchHHHHHHHHHhhCCCEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCcccccccccccCCcCHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCCCCCCCCCCC
Q 016903 200 CRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDDST 279 (380)
Q Consensus 200 v~NN~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t~R~~gHs~~Dd~~ 279 (380)
|+||+|+++++...+.+.+++++++++||+++++|||+|++++++++++|++++|++++|+|||+.|||.+|||++|||.
T Consensus 161 v~NN~~~i~~~~~~~~~~~~~~~~a~a~G~~~~~Vdg~d~~~v~~a~~~A~~~ar~~~~P~lIev~~~r~~gHs~~dd~~ 240 (293)
T cd02000 161 CENNGYAISTPTSRQTAGTSIADRAAAYGIPGIRVDGNDVLAVYEAAKEAVERARAGGGPTLIEAVTYRLGGHSTSDDPS 240 (293)
T ss_pred EeeCCeeccCCHHHHhCCccHHHHHHhCCCCEEEECCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEeccCCCCCCCCcc
Confidence 99999999998877777789999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCChhhHHHHHhcCChHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 016903 280 KYRPVDEIEWWRTTQDPVTRFRKWIESNGWWNGDIESELRSSVRKQILHALQEA 333 (380)
Q Consensus 280 ~Yr~~~e~~~~~~~~DPi~~~~~~L~~~g~~t~~e~~~i~~~~~~~v~~a~~~a 333 (380)
.||+++|++.|+ .+|||.+|+++|+++|+||++++++|+++++++|++++++|
T Consensus 241 ~Yr~~~e~~~~~-~~dpi~~~~~~L~~~g~~~~~~~~~~~~~~~~~v~~a~~~a 293 (293)
T cd02000 241 RYRTKEEVEEWK-KRDPILRLRKYLIEAGILTEEELAAIEAEVKAEVEEAVEFA 293 (293)
T ss_pred cCCCHHHHHHHh-cCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHhC
Confidence 999999999998 69999999999999999999999999999999999999864
No 11
>PRK09404 sucA 2-oxoglutarate dehydrogenase E1 component; Reviewed
Probab=100.00 E-value=4.5e-60 Score=508.13 Aligned_cols=340 Identities=14% Similarity=0.152 Sum_probs=295.6
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccchhhHHHHHHHh------cCCCCcEEEc-ccccHHHHHH--
Q 016903 32 KVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRISFYLTTSGEEAINIASAA------AIKNDDFVVP-QYREPGVLLW-- 102 (380)
Q Consensus 32 ~~~~e~l~~~y~~M~~~R~~e~~~~~~~~~g~i~~~~~~~G~Ea~~~~~~~------~l~~~D~v~~-~yR~~~~~l~-- 102 (380)
.+++++++++|+.|+++|.||+++..+|..++. | ++.|||++.+++.. +++++|++++ +||||+++|+
T Consensus 185 ~~s~e~~~~il~~m~~~r~fE~fl~~~f~~~Kr-f--~~eG~Ea~i~gl~~li~~a~~lg~~D~vigmaHRgrlnvLa~v 261 (924)
T PRK09404 185 SFSAEEKKAILERLTAAEGFERFLHTKFVGQKR-F--SLEGGESLIPMLDEIIRRAGKLGVKEIVIGMAHRGRLNVLVNV 261 (924)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHhccCCc-c--cccchhhHHHHHHHHHHHHHhCCCCCEEEecCcCchHHHHHHh
Confidence 789999999999999999999999999988764 3 68999999999988 6778999999 5999999999
Q ss_pred cCCCHHHHHHHhhcCC--CCCCCCCCCccccCCCC-----CC-----ccccCcccccchHHHHHHHHHhhhcCCC-----
Q 016903 103 RGFSMQEFANQCFGNK--ADYGKGRQMPIHYGSNK-----HN-----YFTVSSTIATQLPHAVGAAYALKMDRKD----- 165 (380)
Q Consensus 103 ~G~~~~~~~~e~~g~~--~~~~~G~~~~~H~~~~~-----~~-----~~~~~g~lG~~lp~A~G~A~A~k~~~~~----- 165 (380)
+|++++++|+|++|+. ++.+.++...+|++... -+ ...+.+++|.+.|+|+|+|+|.|+++.+
T Consensus 262 ~G~~~~~ifaEf~Gk~~~~~~~~~GdvkyHlG~~~~~~g~gg~mhi~l~~npShleav~Pva~G~A~A~q~~~~~~~~~~ 341 (924)
T PRK09404 262 LGKPPRDLFAEFEGKHGPDEVLGSGDVKYHLGFSSDRETDGGEVHLSLAFNPSHLEIVNPVVEGSVRARQDRRGDGQDRK 341 (924)
T ss_pred cCCCHHHHHHHHcCCCCCCCCCCCCCcccccCccccccCCCCeeEeeccCCccccccccCeehhHHHHHHHhcCCccccc
Confidence 5999999999999987 33333334444544321 01 1224689999999999999999998877
Q ss_pred -CeeEEEeCcccc-CcchHHHHHHHHHHcCCC---EEEEEEcCCcccccccccccCCcCHHHHHhhcCceEEEEeCCCHH
Q 016903 166 -ACAVTYFGDGGT-SEGDFHAALNFSAVTEAP---VIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDAL 240 (380)
Q Consensus 166 -~~vv~~~GDG~~-~eG~~~Eal~~A~~~~Lp---vi~vv~NN~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~VdG~D~~ 240 (380)
.++||++|||++ +||.|||+||+|+.|++| +||||+||+|+++|+...+.+...++++|++||+|+++|||+|++
T Consensus 342 ~~v~v~~~GDgA~agqG~v~EalNlA~l~~lp~ggvIfvveNNq~g~tT~~~~~~s~~~~sd~Ak~~giP~~~VDG~D~~ 421 (924)
T PRK09404 342 KVLPILIHGDAAFAGQGVVAETLNLSQLRGYRTGGTIHIVINNQIGFTTSPPDDRSTPYCTDVAKMVQAPIFHVNGDDPE 421 (924)
T ss_pred ceEEEEEecCccccCCChHHHHHHHHHhcCCCCCCEEEEEEeCCEEEeeCHHHhccchhHHHHHeecCCcEEEEcCCCHH
Confidence 799999999998 799999999999999997 999999999999999988887788999999999999999999999
Q ss_pred HHHHHHHHHHHHhhccCCcEEEEEEeecCCCCCCCCCCCCCCChhhHHHHHhcCChHHHHHHHHHHcCCCCHHHHHHHHH
Q 016903 241 AIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDDSTKYRPVDEIEWWRTTQDPVTRFRKWIESNGWWNGDIESELRS 320 (380)
Q Consensus 241 av~~a~~~a~~~ar~~~gP~lIe~~t~R~~gHs~~Dd~~~Yr~~~e~~~~~~~~DPi~~~~~~L~~~g~~t~~e~~~i~~ 320 (380)
+|+.+++.|++++|+++||+|||+.|||++|||++|+|. ||+++|++.|++.+||+.+|+++|+++|++|++++++|++
T Consensus 422 AV~~a~~~A~e~~r~g~gPvlIE~~tYR~~GHne~D~p~-yr~p~ey~~~~~~~dpi~~~~~~Li~~G~lt~~e~~~i~~ 500 (924)
T PRK09404 422 AVVFATRLALEYRQKFKKDVVIDLVCYRRHGHNEGDEPS-FTQPLMYKKIKKHPTTRELYADKLVAEGVITEEEADEMVN 500 (924)
T ss_pred HHHHHHHHHHHHHHhcCcCEEEEEEEecCCCCCCCCCCc-CCCHHHHHHHHhcCCHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 999999999999999999999999999999999999875 9999999999756899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCccccccccCC----------CccHHHHHHHHHHHHHhCCCCCCCCC
Q 016903 321 SVRKQILHALQEAEKAEKPPISDLFTDVYDVS----------PSNLREQEHSLRETIKKHPQDYPSNV 378 (380)
Q Consensus 321 ~~~~~v~~a~~~a~~~p~p~~~~~~~~vy~~~----------~~~~~~~~~~l~~~~~~~p~~~~~~~ 378 (380)
+++++|++|+++|++. .+.+.+..+|... +....+.++.+.+.+...|++|+++.
T Consensus 501 ~~~~~v~~a~~~A~~~---~~~~~~~~~~~~~~~~~~~~~~~t~v~~~~l~~~~~~~~~~P~~f~~h~ 565 (924)
T PRK09404 501 EYRDALDAGFEVVKEW---RPADWLAGDWSPYLGHEWDDPVDTGVPLERLKELAEKLTTVPEGFKVHP 565 (924)
T ss_pred HHHHHHHHHHHHHHhc---CcccccccccccccccccccccCCCCCHHHHHHHHHHhccCCCCCcccH
Confidence 9999999999999986 3556666666511 11223446677777889999998764
No 12
>TIGR00239 2oxo_dh_E1 2-oxoglutarate dehydrogenase, E1 component. The E1 ortholog from Corynebacterium glutamicum is unusual in having an N-terminal extension that resembles the dihydrolipoamide succinyltransferase (E2) component of 2-oxoglutarate dehydrogenase.
Probab=100.00 E-value=2.6e-54 Score=461.81 Aligned_cols=343 Identities=16% Similarity=0.137 Sum_probs=296.0
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCcccccccchhhHHHHHHHh------cCCCCcEEEcc-cccHHHHHH
Q 016903 31 VKVSEGVAIKMYNDMVTLQTMDTIFYEAQR-QGRISFYLTTSGEEAINIASAA------AIKNDDFVVPQ-YREPGVLLW 102 (380)
Q Consensus 31 ~~~~~e~l~~~y~~M~~~R~~e~~~~~~~~-~g~i~~~~~~~G~Ea~~~~~~~------~l~~~D~v~~~-yR~~~~~l~ 102 (380)
..+++++.+++++.|+++..||+++..+|. ++| | +..|-|++..++-. ..+..|+++++ |||+.++|+
T Consensus 184 ~~~~~~~k~~il~~L~~ae~fE~fl~~kf~g~KR--F--slEG~eslip~l~~~i~~~~~~gv~d~v~gmaHRGRlnvL~ 259 (929)
T TIGR00239 184 AQFNSEEKKRFLSRLTAAEGFERFLGAKFPGAKR--F--SLEGLDALVPMLKEIIRHSVNSGTRDVVLGMAHRGRLNVLV 259 (929)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCce--e--ecccHHHHHHHHHHHHHHHHHcCCCeEEeccccCCcHHHHH
Confidence 468999999999999999999999999885 444 3 56788888776544 44578999998 999999999
Q ss_pred --cCCCHHHHHHHhhcCCCC-CCCCCCCc-cccCC-----------CCCCccccCcccccchHHHHHHHHHhhhcCC---
Q 016903 103 --RGFSMQEFANQCFGNKAD-YGKGRQMP-IHYGS-----------NKHNYFTVSSTIATQLPHAVGAAYALKMDRK--- 164 (380)
Q Consensus 103 --~G~~~~~~~~e~~g~~~~-~~~G~~~~-~H~~~-----------~~~~~~~~~g~lG~~lp~A~G~A~A~k~~~~--- 164 (380)
+|++++++|+|+.|+..+ .+.|++.. +|++. ....+.+++|+|+.+.|+|+|.|+|.|+++.
T Consensus 260 nv~gkp~~~if~ef~g~~~~~~~~g~gdvKyHlg~~~~~~~~~~~~~~~~l~~npSHLeav~Pva~G~ArA~q~~~~~~~ 339 (929)
T TIGR00239 260 NVLGKPPEDIFSEFAGKHKSHLPDGTGDVKYHMGRFSSDFTTDGKLVHLALAFNPSHLEIVSPVVIGSTRARLDRLNDSP 339 (929)
T ss_pred HHhCCCHHHHHHHHcCCCCCcccCCCCCcCccCCCcccccccCCCcceeeecCCCcccccccchhhhHHHHHHHhcCCcc
Confidence 999999999999998766 34467655 88884 2456788999999999999999999998865
Q ss_pred ---CCeeEEEeCcccc-CcchHHHHHHHHHHcCCCE---EEEEEcCCcccccccccccCCcCHHHHHhhcCceEEEEeCC
Q 016903 165 ---DACAVTYFGDGGT-SEGDFHAALNFSAVTEAPV---IFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGN 237 (380)
Q Consensus 165 ---~~~vv~~~GDG~~-~eG~~~Eal~~A~~~~Lpv---i~vv~NN~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~VdG~ 237 (380)
+.++||++|||++ +||.|||+||+|+.|++|+ ||||+||+|+++|+.....+...++++|++||+|+++|||+
T Consensus 340 ~~~~~v~v~~~GDgA~agQG~v~EaLNlA~l~~lPvGGtIfvveNNqyg~tT~~~~~~s~~~~sd~Ak~ygiP~~~VDG~ 419 (929)
T TIGR00239 340 ESTKVLAILIHGDAAFAGQGVVQETLNMSKLRGYSVGGTIHIIINNQIGFTTNPLDARSTPYCSDLAKMIQAPIFHVNAD 419 (929)
T ss_pred cccceEEEEEeccccccCCChHHHHHHHHHhcCCCCCCEEEEEEeCCEEEEEcHHHhcCccCHHHHheecCCCEEEECCC
Confidence 5789999999997 8999999999999999997 99999999999998887777778999999999999999999
Q ss_pred CHHHHHHHHHHHHHHhhccCCcEEEEEEeecCCCCCCCCCCCCCCChhhHHHHHhcCChHHHHHHHHHHcCCCCHHHHHH
Q 016903 238 DALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDDSTKYRPVDEIEWWRTTQDPVTRFRKWIESNGWWNGDIESE 317 (380)
Q Consensus 238 D~~av~~a~~~a~~~ar~~~gP~lIe~~t~R~~gHs~~Dd~~~Yr~~~e~~~~~~~~DPi~~~~~~L~~~g~~t~~e~~~ 317 (380)
|+++|+.+++.|++++|+++||+|||+.|||++|||++|+|..||+ ++++.|++.+||+.+|+++|+++|++|++++++
T Consensus 420 D~~AV~~a~~~Ave~~r~g~gPvlIE~~tYR~~GHne~D~p~~yrp-~~~~~i~~~~dPi~~~~~~Li~~Gv~te~e~~~ 498 (929)
T TIGR00239 420 DPEAVAFATRLAVEYRNTFKRDVFIDLVGYRRHGHNEADEPSATQP-LMYQKIKKHPTPRKVYADKLVSEGVATEEDVTE 498 (929)
T ss_pred CHHHHHHHHHHHHHHHHhcCCCEEEEEEeccCCCCCCCCCCccCCH-HHHHHHHhCCCHHHHHHHHHHHcCCCCHHHHHH
Confidence 9999999999999999999999999999999999999999988998 778888756899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCCC--c---cccccccC--CCccHHHHHHHHHHHHHhCCCCCCCCC
Q 016903 318 LRSSVRKQILHALQEAEKAEKPPIS--D---LFTDVYDV--SPSNLREQEHSLRETIKKHPQDYPSNV 378 (380)
Q Consensus 318 i~~~~~~~v~~a~~~a~~~p~p~~~--~---~~~~vy~~--~~~~~~~~~~~l~~~~~~~p~~~~~~~ 378 (380)
|+++++++|++|++.++..+.|.+. . +..+.+.. ++....+.+..|.+.+...|+.|.++.
T Consensus 499 i~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~v~~~~l~~l~~~~~~~P~~f~~h~ 566 (929)
T TIGR00239 499 MVNLYRDALEAADCVVPSWREMNTASFTWSPELNHEWDEEYPNKVEMKRLQELAKRISEVPEGVEMHS 566 (929)
T ss_pred HHHHHHHHHHHHHHhhhccCCccccccccccccccccccCCCCCCCHHHHHHHHHHhccCCCCccccH
Confidence 9999999999999999886655433 1 22221111 233345678888899999999987664
No 13
>cd02016 TPP_E1_OGDC_like Thiamine pyrophosphate (TPP) family, E1 of OGDC-like subfamily, TPP-binding module; composed of proteins similar to the E1 component of the 2-oxoglutarate dehydrogenase multienzyme complex (OGDC). OGDC catalyzes the oxidative decarboxylation of 2-oxoglutarate to succinyl-CoA and carbon dioxide, a key reaction of the tricarboxylic acid cycle.
Probab=100.00 E-value=2.4e-49 Score=372.97 Aligned_cols=230 Identities=19% Similarity=0.225 Sum_probs=208.7
Q ss_pred HHHHHHHHHhcCCcccccccchhhHHHHHHHhcCCC------CcEEEcc-cccHHHHHH--cCCCHHHHHHHhhcCCC--
Q 016903 51 MDTIFYEAQRQGRISFYLTTSGEEAINIASAAAIKN------DDFVVPQ-YREPGVLLW--RGFSMQEFANQCFGNKA-- 119 (380)
Q Consensus 51 ~e~~~~~~~~~g~i~~~~~~~G~Ea~~~~~~~~l~~------~D~v~~~-yR~~~~~l~--~G~~~~~~~~e~~g~~~-- 119 (380)
||+++.++|..-+ +| +..|+|++++++...+++ .|+++++ ||||.++|+ +|++++++|+|+.|+.+
T Consensus 1 ~e~f~~~~f~~~k-rf--s~eG~Es~~~~l~~~~~~~~~~~~~d~v~gm~HRgrln~L~~~lg~~~~~if~ef~g~~~~~ 77 (265)
T cd02016 1 FEQFLATKFPGQK-RF--GLEGAESLIPALDELIDRAAELGVEEVVIGMAHRGRLNVLANVLGKPLEQIFSEFEGKSEFP 77 (265)
T ss_pred ChhhHHHhcCCCe-EE--EecCHHHHHHHHHHHHHHHHhcCCCeEEeccCcCCcHHHHHHHhCCCHHHHHHHhhCCCCCC
Confidence 5778877775322 23 589999999999999886 7999998 999999999 99999999999999887
Q ss_pred -CCCCCCCCccccCCCC-----------CCccccCcccccchHHHHHHHHHhhhcC-----CCCeeEEEeCcccc-Ccch
Q 016903 120 -DYGKGRQMPIHYGSNK-----------HNYFTVSSTIATQLPHAVGAAYALKMDR-----KDACAVTYFGDGGT-SEGD 181 (380)
Q Consensus 120 -~~~~G~~~~~H~~~~~-----------~~~~~~~g~lG~~lp~A~G~A~A~k~~~-----~~~~vv~~~GDG~~-~eG~ 181 (380)
+.+.|+++++|++... ..+.+++|++|.++|+|+|+|+|.|+++ .+.++||++|||++ +||.
T Consensus 78 ~~~~~~gdv~yHlg~~~~~~~~~~~~~~~~l~~npS~l~~~~pva~G~A~A~k~~~~~~~~~~~v~v~~~GDgA~~~qG~ 157 (265)
T cd02016 78 EDDEGSGDVKYHLGYSSDRKTPSGKKVHLSLAPNPSHLEAVNPVVMGKTRAKQDYRGDGERDKVLPILIHGDAAFAGQGV 157 (265)
T ss_pred CCCCCCCCcCcCCccCcccccCCCCeeEEEecCCCcccccccCeehhHHHHHHHhcCCccCCCeEEEEEecCccccCCCh
Confidence 5567888999997653 5678899999999999999999999997 47899999999996 7999
Q ss_pred HHHHHHHHHHcCCC---EEEEEEcCCcccccccccccCCcCHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCC
Q 016903 182 FHAALNFSAVTEAP---VIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGR 258 (380)
Q Consensus 182 ~~Eal~~A~~~~Lp---vi~vv~NN~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~a~~~ar~~~g 258 (380)
|||+||+|..|++| +||||+||+|+++|+...+++..+++++|++||+|+++|||+|+++|+++++.|++++|+++|
T Consensus 158 ~~EalNlA~l~~lp~gg~ifvveNNq~g~sT~~~~~~~~~~~~~~a~~~gip~~~VdG~D~~aV~~a~~~A~~~~r~g~g 237 (265)
T cd02016 158 VYETLNLSNLPGYTTGGTIHIVVNNQIGFTTDPRDSRSSPYCTDVAKMIGAPIFHVNGDDPEAVVRATRLALEYRQKFKK 237 (265)
T ss_pred HHHHHHHHHhcCCCCCCEEEEEEeCCEEEEecHHHhcccccHHHHHeecCCCEEEEcCCCHHHHHHHHHHHHHHHHhcCC
Confidence 99999999999998 999999999999999998888889999999999999999999999999999999999999999
Q ss_pred cEEEEEEeecCCCCCCCCCCCCCCCh
Q 016903 259 PILIEALTYRVGHHTTSDDSTKYRPV 284 (380)
Q Consensus 259 P~lIe~~t~R~~gHs~~Dd~~~Yr~~ 284 (380)
|+|||++|||++|||++|+|. |+.|
T Consensus 238 p~lIe~~tYR~~GHse~D~p~-~t~p 262 (265)
T cd02016 238 DVVIDLVCYRRHGHNELDEPS-FTQP 262 (265)
T ss_pred CEEEEEEEecCCCCCCcCCcc-ccCC
Confidence 999999999999999999874 5554
No 14
>PRK12270 kgd alpha-ketoglutarate decarboxylase; Reviewed
Probab=100.00 E-value=1.1e-35 Score=311.60 Aligned_cols=344 Identities=17% Similarity=0.168 Sum_probs=277.8
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHH-hcCCcccccccchhhHHHHHHHhcCC------CCcEEEcc-cccHHHHH
Q 016903 30 FVKVSEGVAIKMYNDMVTLQTMDTIFYEAQ-RQGRISFYLTTSGEEAINIASAAAIK------NDDFVVPQ-YREPGVLL 101 (380)
Q Consensus 30 ~~~~~~e~l~~~y~~M~~~R~~e~~~~~~~-~~g~i~~~~~~~G~Ea~~~~~~~~l~------~~D~v~~~-yR~~~~~l 101 (380)
..+.++++.+.+++.+..+..||.++..+| .|+| | +..|-|.+...+-..|+ -+.+++++ |||+.+.|
T Consensus 487 ~~kp~~~eq~~iL~~LnaaEaFEtFLqtkyvGqkR--F--slEG~Es~iplld~~~~~aa~~~l~evvigm~HRGRLNVL 562 (1228)
T PRK12270 487 HEKPTREEQKRILSKLNAAEAFETFLQTKYVGQKR--F--SLEGGESLIPLLDAVLDQAAEHGLDEVVIGMAHRGRLNVL 562 (1228)
T ss_pred CCCCCHHHHHHHHHHhhhHHHHHHHHhhhccccee--e--eecchhhHHHHHHHHHHHHHhcCCceEEecccccchHHHH
Confidence 467899999999999999999999998887 4554 3 55788887766555443 46888885 99999999
Q ss_pred H--cCCCHHHHHHHhhcCCCCC-CCCCC-CccccCCCC-----------CCccccCcccccchHHHHHHHHHhhhcC---
Q 016903 102 W--RGFSMQEFANQCFGNKADY-GKGRQ-MPIHYGSNK-----------HNYFTVSSTIATQLPHAVGAAYALKMDR--- 163 (380)
Q Consensus 102 ~--~G~~~~~~~~e~~g~~~~~-~~G~~-~~~H~~~~~-----------~~~~~~~g~lG~~lp~A~G~A~A~k~~~--- 163 (380)
+ .|.+..++|.||-|+.+.. ..|+| ..+|++... .....+.++|...-|+.-|++.|.+..-
T Consensus 563 ani~gK~y~qiF~EFegn~dp~~~~GsGDVKYHlG~eG~~~~~~g~~~~v~laaNPSHLEavdpVleGivRakQd~l~~g 642 (1228)
T PRK12270 563 ANIVGKPYSQIFREFEGNLDPRSAQGSGDVKYHLGAEGTFTQMFGDEIKVSLAANPSHLEAVDPVLEGIVRAKQDRLDKG 642 (1228)
T ss_pred HHHhcCCHHHHHHHhcCCCCccccCcCcceeeeccCceeeeccCCCeeEEEEecCchhhhhcchHhhhhhhhhhhhhccc
Confidence 7 7999999999999987643 34554 678876421 2235568999999999999999987431
Q ss_pred C---CCeeEEEeCcccc-CcchHHHHHHHHHHcCCC---EEEEEEcCCcccccccccccCCcCHHHHHhhcCceEEEEeC
Q 016903 164 K---DACAVTYFGDGGT-SEGDFHAALNFSAVTEAP---VIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDG 236 (380)
Q Consensus 164 ~---~~~vv~~~GDG~~-~eG~~~Eal~~A~~~~Lp---vi~vv~NN~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~VdG 236 (380)
. ....|+++||++| +||.++|.||+|..+++| +||||.||+++++|......+.....++|+++++|+++|||
T Consensus 643 ~~~~~vlpi~~hGdaafagQGvV~Etlnla~l~~y~tGGtIhvivNNqiGftT~p~~~Rss~y~td~ak~~~~PifhVNG 722 (1228)
T PRK12270 643 EEGFTVLPILLHGDAAFAGQGVVAETLNLSQLRGYRTGGTIHIVVNNQVGFTTAPESSRSSEYATDVAKMIQAPIFHVNG 722 (1228)
T ss_pred ccCCceeEEEEeccccccCCchHHHHHHHHhccCCCCCCeEEEEEecCcccccCccccccchhhHHHHhhcCCCEEeECC
Confidence 1 3468999999997 899999999999999998 99999999999999988777777778999999999999999
Q ss_pred CCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCCCCCCCCCCCCCCChhhHHHHHhcCChHHHHHHHHHHcCCCCHHHHH
Q 016903 237 NDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDDSTKYRPVDEIEWWRTTQDPVTRFRKWIESNGWWNGDIES 316 (380)
Q Consensus 237 ~D~~av~~a~~~a~~~ar~~~gP~lIe~~t~R~~gHs~~Dd~~~Yr~~~e~~~~~~~~DPi~~~~~~L~~~g~~t~~e~~ 316 (380)
+|+++|..+.+.|+++++++++|++|++.|||.+||+++|||+ +..+..++.....+..-+.|.+.|+.+|.+|++|++
T Consensus 723 dDpeAv~~va~lA~~yr~~f~~dVvIdlvcYRrrGHNEgDdPS-mtqP~mY~~i~~~~svrk~yte~Ligrgdit~ee~e 801 (1228)
T PRK12270 723 DDPEAVVRVARLAFEYRQRFHKDVVIDLVCYRRRGHNEGDDPS-MTQPLMYDLIDAKRSVRKLYTEALIGRGDITVEEAE 801 (1228)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCCeEEEEEEEeecCCCCCCCcc-cCCchhhhhhhhcchHHHHHHHHHhhcCCCCHHHHH
Confidence 9999999999999999999999999999999999999999986 344555555543333445899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCCCC---ccccc-cccC--CCccHHHHHHHHHHHHHhCCCCCCCCC
Q 016903 317 ELRSSVRKQILHALQEAEKAEKPPIS---DLFTD-VYDV--SPSNLREQEHSLRETIKKHPQDYPSNV 378 (380)
Q Consensus 317 ~i~~~~~~~v~~a~~~a~~~p~p~~~---~~~~~-vy~~--~~~~~~~~~~~l~~~~~~~p~~~~~~~ 378 (380)
++..+.+.+++.++...++....+++ ....+ .... .+-.-.+.++.+.+.....|+.|.++.
T Consensus 802 ~~l~dy~~~Le~~f~e~re~~~~~~~~~~~~~~~~~~~~~~~Tav~~~~l~~i~da~~~~PegFt~Hp 869 (1228)
T PRK12270 802 QALRDYQGQLERVFNEVREAEKKPPEPPESVESDQGPPAGVDTAVSAEVLERIGDAHVNLPEGFTVHP 869 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCCCCCCCccccccCCCCCCCCCCHHHHHHHHHHhccCCCCCccCh
Confidence 99999999999999988765433322 11111 1110 122345678888888889999998874
No 15
>PRK12315 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=100.00 E-value=2e-34 Score=301.75 Aligned_cols=225 Identities=17% Similarity=0.165 Sum_probs=187.3
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-ccccccchhhHHHHHHHhcCC---CCcEEE--cccccHHHH
Q 016903 27 DSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRI-SFYLTTSGEEAINIASAAAIK---NDDFVV--PQYREPGVL 100 (380)
Q Consensus 27 ~~~~~~~~~e~l~~~y~~M~~~R~~e~~~~~~~~~g~i-~~~~~~~G~Ea~~~~~~~~l~---~~D~v~--~~yR~~~~~ 100 (380)
|.|.++++.++|..+-..+ |.+ ..+.++++ +++++++|+ +.++++.++. +.|+++ ++||+|++.
T Consensus 9 p~d~~~l~~~~l~~l~~~i---r~~-----~~~~~~~~~Gh~~~~lg~--vel~~al~~~f~~~~D~ii~d~ghr~~~~~ 78 (581)
T PRK12315 9 PADLKKLSLDELEQLASEI---RTA-----LLEKDSAHGGHVGPNLGV--VELTIALHYVFNSPKDKIVWDVSHQSYPHK 78 (581)
T ss_pred HHHHhhCCHHHHHHHHHHH---HHH-----HHHHHHhcCCCcCcchhH--HHHHHHHHhhcCCCCCcEEEecCCchHHHH
Confidence 4457788877776665544 433 22334555 599999999 4445555665 899999 899999999
Q ss_pred HHcCCCHHHHHHHhhcCCCCCCCCCCCccccCCCCCCccccCcccccchHHHHHHHHHhhhcCCCCeeEEEeCccccCcc
Q 016903 101 LWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEG 180 (380)
Q Consensus 101 l~~G~~~~~~~~e~~g~~~~~~~G~~~~~H~~~~~~~~~~~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG 180 (380)
+++|++++.++.+++|+.+|++++.+ +.|.. ...|+.|+++|+|+|+|+|.|+++.+.+|||++|||++++|
T Consensus 79 l~~G~~~~~~~~~~~g~~~G~~~~~~-s~~~~-------~~~g~~~~~ls~A~G~A~A~k~~~~~~~vv~~iGDG~~~eG 150 (581)
T PRK12315 79 MLTGRKEAFLDPDHYDDVTGYTNPEE-SEHDF-------FTVGHTSTSIALATGLAKARDLKGEKGNIIAVIGDGSLSGG 150 (581)
T ss_pred HHcCCccchhhHHHcCCCCCCCCCCC-CCCCC-------cCCCcHHHHHHHHHHHHHHHHhcCCCCeEEEEECchhhhcc
Confidence 99999999999999999999988776 33321 35688999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHcCCCEEEEEEcCCccccccccc---------ccCCcCHHHHHhhcCceEEEE-eCCCHHHHHHHHHHHH
Q 016903 181 DFHAALNFSAVTEAPVIFICRNNGWAISTPISD---------QFRSDGAVVKGRAYGVRSIRV-DGNDALAIYSAVHAAR 250 (380)
Q Consensus 181 ~~~Eal~~A~~~~Lpvi~vv~NN~~~~~~~~~~---------~~~~~~~~~~a~a~G~~~~~V-dG~D~~av~~a~~~a~ 250 (380)
.+||+||+|+.|++|+||||+||+|++++++.. .....++..++++|||+++.| ||||+.++++++++|.
T Consensus 151 ~~~EAln~A~~~k~~li~Ii~dN~~si~~~~~~~~~~l~~~~~~~~~~~~~~~~a~G~~~~~v~DG~D~~~l~~a~~~a~ 230 (581)
T PRK12315 151 LALEGLNNAAELKSNLIIIVNDNQMSIAENHGGLYKNLKELRDTNGQSENNLFKAMGLDYRYVEDGNDIESLIEAFKEVK 230 (581)
T ss_pred hHHHHHHHHHhhCCCEEEEEECCCCcCCCCCchhhhhhhhhhhcccccHHHHHHhcCCeEEEeeCCCCHHHHHHHHHHHH
Confidence 999999999999999999999999999987742 223445678999999999998 9999999999998865
Q ss_pred HHhhccCCcEEEEEEeecCCCCC
Q 016903 251 EMAIGEGRPILIEALTYRVGHHT 273 (380)
Q Consensus 251 ~~ar~~~gP~lIe~~t~R~~gHs 273 (380)
++++|++|+++|+|.+|..
T Consensus 231 ----~~~gP~~i~~~T~kG~G~~ 249 (581)
T PRK12315 231 ----DIDHPIVLHIHTLKGKGYQ 249 (581)
T ss_pred ----hCCCCEEEEEEeecCCCCC
Confidence 4689999999999999854
No 16
>COG3959 Transketolase, N-terminal subunit [Carbohydrate transport and metabolism]
Probab=99.98 E-value=4.2e-31 Score=238.25 Aligned_cols=217 Identities=19% Similarity=0.207 Sum_probs=173.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCcccccccchh-hHHHHHHHhcCC---------CCcEEEcccccH------HHHHH
Q 016903 39 IKMYNDMVTLQTMDTIFYEAQRQGRISFYLTTSGE-EAINIASAAAIK---------NDDFVVPQYREP------GVLLW 102 (380)
Q Consensus 39 ~~~y~~M~~~R~~e~~~~~~~~~g~i~~~~~~~G~-Ea~~~~~~~~l~---------~~D~v~~~yR~~------~~~l~ 102 (380)
.++-+....+|.---++.....+|.. .++++. |-.++.....|+ ..|+++.+ .|| +.+..
T Consensus 8 ~~L~~~A~~iRr~~v~m~~~~~~GH~---G~SLS~~eILa~LYf~~m~~~p~~p~~~~RDrfiLS-KGHaa~AlYa~Lae 83 (243)
T COG3959 8 DELERIAREIRRNIVRMLANAGSGHV---GGSLSVVEILAVLYFKIMNIDPDDPKWPGRDRFILS-KGHAAPALYATLAE 83 (243)
T ss_pred HHHHHHHHHHHHHHHHHhcccCCCCc---CccchHHHHHHHHHHHHhccCCCCCCCCCCCeEEEe-cccchHHHHHHHHH
Confidence 34444455556554444444445533 333332 444444444432 24777776 455 24445
Q ss_pred cCCCHHHHHHHhhcCCCCCCCCCCCccccCC-CCCCccccCcccccchHHHHHHHHHhhhcCCCCeeEEEeCccccCcch
Q 016903 103 RGFSMQEFANQCFGNKADYGKGRQMPIHYGS-NKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGD 181 (380)
Q Consensus 103 ~G~~~~~~~~e~~g~~~~~~~G~~~~~H~~~-~~~~~~~~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~ 181 (380)
+|+.+++-+..+.. .|+.+++|+.. ..+++..++|+||+|+++|+|+|++.|+++.+..|++++|||+++||.
T Consensus 84 ~G~~p~eeL~~~~~------~~srL~~Hp~~~~~pgve~stGSLGqGLsvavGmAlg~kl~~~~~~VyvilGDGEl~EG~ 157 (243)
T COG3959 84 KGYFPEEELETFRR------IGSRLPGHPERNKTPGVEVSTGSLGQGLSVAVGMALGAKLKGSPYRVYVILGDGELDEGQ 157 (243)
T ss_pred cCCCCHHHHHHhcc------CCCcCCCCCccCCCCceeecCCcccccchHHHHHHHHHhhcCCCceEEEEecCccccccc
Confidence 89988888887653 48889999987 556899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCC-CEEEEEEcCCcccccccccccCCcCHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcE
Q 016903 182 FHAALNFSAVTEA-PVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPI 260 (380)
Q Consensus 182 ~~Eal~~A~~~~L-pvi~vv~NN~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~ 260 (380)
+|||+.+|++|+| |+|.||+-|..++++.+.+..+..++.+++++|||++++|||||++++++++.++... .++|.
T Consensus 158 ~WEAam~Aah~~L~NLiaivD~N~~QldG~t~~i~~~~pL~~k~eAFGw~V~evdG~d~~~i~~a~~~~~~~---~~rP~ 234 (243)
T COG3959 158 VWEAAMTAAHYKLDNLIAIVDRNKLQLDGETEEIMPKEPLADKWEAFGWEVIEVDGHDIEEIVEALEKAKGS---KGRPT 234 (243)
T ss_pred HHHHHHHHHHhccCcEEEEEecCCcccCCchhhccCcchhHHHHHhcCceEEEEcCcCHHHHHHHHHhhhcc---CCCCe
Confidence 9999999999999 8999999999999999999999999999999999999999999999999999887642 34999
Q ss_pred EEEEEeec
Q 016903 261 LIEALTYR 268 (380)
Q Consensus 261 lIe~~t~R 268 (380)
+|.+.|.+
T Consensus 235 ~IIa~Tvk 242 (243)
T COG3959 235 VIIAKTVK 242 (243)
T ss_pred EEEEeccc
Confidence 99999865
No 17
>KOG0450 consensus 2-oxoglutarate dehydrogenase, E1 subunit [Carbohydrate transport and metabolism]
Probab=99.97 E-value=6.4e-29 Score=251.45 Aligned_cols=344 Identities=13% Similarity=0.136 Sum_probs=281.3
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccchhhHHHHHHHhcC------CCCcEEEcc-cccHHHHHH
Q 016903 30 FVKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRISFYLTTSGEEAINIASAAAI------KNDDFVVPQ-YREPGVLLW 102 (380)
Q Consensus 30 ~~~~~~e~l~~~y~~M~~~R~~e~~~~~~~~~g~i~~~~~~~G~Ea~~~~~~~~l------~~~D~v~~~-yR~~~~~l~ 102 (380)
...++.|+.+-+|..+.++-.||+++..++..-| +| ...|-|++..|+-..+ +.+++|+++ |||+.+.|+
T Consensus 243 ~~q~s~e~k~~il~RL~~st~FE~FLa~Kw~seK-RF--GLEGcE~lIP~mK~iiDrS~elGVe~iviGMpHRGRLNvL~ 319 (1017)
T KOG0450|consen 243 PMQYSHEQKRVILDRLTRSTRFEEFLATKWPSEK-RF--GLEGCEVLIPAMKTIIDRSSELGVESIVIGMPHRGRLNVLA 319 (1017)
T ss_pred ccccCHHHHHHHHHHHHHhhHHHHHHhhhCCccc-cc--cccchhhhhhHHHHHhhhhhhcCchheEecCCccchhHHHH
Confidence 4578999999999999999999999998886433 23 3468888887776544 567999995 999999887
Q ss_pred --cCCCHHHHHHHhhcCCCCCCCCCC-CccccCCC---C---------CCccccCcccccchHHHHHHHHHhhhcC----
Q 016903 103 --RGFSMQEFANQCFGNKADYGKGRQ-MPIHYGSN---K---------HNYFTVSSTIATQLPHAVGAAYALKMDR---- 163 (380)
Q Consensus 103 --~G~~~~~~~~e~~g~~~~~~~G~~-~~~H~~~~---~---------~~~~~~~g~lG~~lp~A~G~A~A~k~~~---- 163 (380)
.-.+++++|.+|.|.. ....|+| ..+|++.. . +....++++|.+.-|+.+|...|.++..
T Consensus 320 NVvRKpl~qIfseF~g~~-~~DeGSGDVKYHLG~~~~R~~r~s~k~i~LslVANPSHLEA~DPVV~GKtrA~q~y~~D~~ 398 (1017)
T KOG0450|consen 320 NVVRKPLEQIFSEFSGLE-AADEGSGDVKYHLGMYYERPNRVSGKNITLSLVANPSHLEAVDPVVMGKTRAEQFYTGDEE 398 (1017)
T ss_pred HHHhhHHHHHHHhccCCC-CCcCCCCceeeeeccccccccccCCceeEEEEecCchhhcccCceeechHHHHHHhccccc
Confidence 4579999999999843 3333544 67776641 1 2346778999999999999999998753
Q ss_pred -CCCeeEEEeCcccc-CcchHHHHHHHHHHcC--C-CEEEEEEcCCcccccccccccCCcCHHHHHhhcCceEEEEeCCC
Q 016903 164 -KDACAVTYFGDGGT-SEGDFHAALNFSAVTE--A-PVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGND 238 (380)
Q Consensus 164 -~~~~vv~~~GDG~~-~eG~~~Eal~~A~~~~--L-pvi~vv~NN~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~VdG~D 238 (380)
++...|.++||++| .||.++|.+.+...-. . ..|+||.||+.+++|......+.+...+.|++.+.|+++|+++|
T Consensus 399 ~~k~m~ILiHGDaaFAgQGVVyET~hls~LP~YtT~GTvHvVvNNQIgFTTDPR~aRSspYcTDvar~v~aPIFHVNaDD 478 (1017)
T KOG0450|consen 399 GKKVMGILIHGDAAFAGQGVVYETFHLSDLPSYTTGGTVHVVVNNQIGFTTDPRFARSSPYCTDVARVVNAPIFHVNADD 478 (1017)
T ss_pred cceeEEEEEecchhhccCceEEEeeccccCCCcccCCeEEEEEccccccccCcccccCCCCchhHHHHhCCCeEeecCCC
Confidence 34567999999999 8999999999877644 3 59999999999999988777777788899999999999999999
Q ss_pred HHHHHHHHHHHHHHhhccCCcEEEEEEeecCCCCCCCCCCCCCCChhhHHHHHhcCChHHHHHHHHHHcCCCCHHHHHHH
Q 016903 239 ALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDDSTKYRPVDEIEWWRTTQDPVTRFRKWIESNGWWNGDIESEL 318 (380)
Q Consensus 239 ~~av~~a~~~a~~~ar~~~gP~lIe~~t~R~~gHs~~Dd~~~Yr~~~e~~~~~~~~DPi~~~~~~L~~~g~~t~~e~~~i 318 (380)
+++|.-+++-|.+.....++.++|+++|||..||++.|.| .+..+-.++..++.+..+..|.+.|+++|.+|+++++++
T Consensus 479 ~EAV~~vc~vAAeWR~tFh~DvVVDlVcyRR~GHNE~DeP-~FTQPlMYk~I~k~~~~l~~Y~ekLl~egtvs~~evd~~ 557 (1017)
T KOG0450|consen 479 PEAVMHVCKVAAEWRKTFHKDVVVDLVCYRRHGHNEIDEP-MFTQPLMYKQIRKHKPVLQKYAEKLLSEGTVSQQEVDEE 557 (1017)
T ss_pred hHHHHHHHHHHHHHHHHhccCeEEEEEEEeecCCCcccCc-cccchHHHHHHHcCCcHHHHHHHHHHhcCcccHHHHHHH
Confidence 9999999999999999999999999999999999999987 478888899998767788899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCCCccccccc----cC----------CCccHHHHHHHHHHHHHhCCCCCCCCC
Q 016903 319 RSSVRKQILHALQEAEKAEKPPISDLFTDVY----DV----------SPSNLREQEHSLRETIKKHPQDYPSNV 378 (380)
Q Consensus 319 ~~~~~~~v~~a~~~a~~~p~p~~~~~~~~vy----~~----------~~~~~~~~~~~l~~~~~~~p~~~~~~~ 378 (380)
.+.+..-+++|++.+++...-...+-++.-| .+ ++....+.++.+...+...|++|+++.
T Consensus 558 ~~k~~~I~eeafe~sKd~~~~~~rdWL~spW~gF~spd~~~~i~~~~~Tgv~~e~L~~ig~~~ss~PE~F~~Hr 631 (1017)
T KOG0450|consen 558 IKKYDNILEEAFERSKDYKPLHIRDWLDSPWPGFFSPDGQPKILPCPSTGVKEEILKHIGKVASSVPEGFKIHR 631 (1017)
T ss_pred HHHHHHHHHHHHHhhccccchhhhhhhcCCCccccCccCCCccccCCCCCCCHHHHHHHHHhhccCCcccchhh
Confidence 9999999999999998764333222222222 21 133345678889999999999998764
No 18
>COG0567 SucA 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, and related enzymes [Energy production and conversion]
Probab=99.97 E-value=1.2e-28 Score=259.27 Aligned_cols=341 Identities=14% Similarity=0.134 Sum_probs=278.5
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCcccccccchhhHHHHHHHhc------CCCCcEEEcc-cccHHHHH
Q 016903 30 FVKVSEGVAIKMYNDMVTLQTMDTIFYEAQR-QGRISFYLTTSGEEAINIASAAA------IKNDDFVVPQ-YREPGVLL 101 (380)
Q Consensus 30 ~~~~~~e~l~~~y~~M~~~R~~e~~~~~~~~-~g~i~~~~~~~G~Ea~~~~~~~~------l~~~D~v~~~-yR~~~~~l 101 (380)
.+.++.|+.+.+|+.+..+..||+++..+|. ++| | +-.|-|+...++-.. .+..++++++ |||+.++|
T Consensus 169 ~~~~~~e~k~~~l~~L~~ae~fE~fl~~kf~g~KR--F--slEG~eslip~l~~~i~~~~~~G~~~vviGMaHRGRLNvL 244 (906)
T COG0567 169 KPTFTAEEKKAILKRLTAAEGFERFLHTKFPGAKR--F--SLEGGESLIPMLDELIDRAGKQGVKEVVIGMAHRGRLNVL 244 (906)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHhhccCCCCcc--c--cccchhhHHHHHHHHHHHHHhcCcceEEecccccchHHHH
Confidence 4678999999999999999999999988874 554 3 557888887765443 4567999995 99999998
Q ss_pred H--cCCCHHHHHHHhhcCCCCCCCCCCCccccCCC----------CCCccccCcccccchHHHHHHHHHhhhcCCC----
Q 016903 102 W--RGFSMQEFANQCFGNKADYGKGRQMPIHYGSN----------KHNYFTVSSTIATQLPHAVGAAYALKMDRKD---- 165 (380)
Q Consensus 102 ~--~G~~~~~~~~e~~g~~~~~~~G~~~~~H~~~~----------~~~~~~~~g~lG~~lp~A~G~A~A~k~~~~~---- 165 (380)
+ .|.+++.+|.||.|+......-+...+|++.. ......++++|....|+..|.+.|.+-...+
T Consensus 245 ~nvlgKp~~~if~eF~g~~~~~~~sGDVKYH~G~~~~~~~~~~~v~l~La~NPSHLE~v~PVV~G~vRa~Qd~~~d~~~~ 324 (906)
T COG0567 245 VNVLGKPYRDIFDEFEGKSAEPDLSGDVKYHLGFSSDRQTDGGKVHLSLAFNPSHLEIVNPVVEGSVRAKQDRLGDTERD 324 (906)
T ss_pred HHHhCCCHHHHHHHhCCCCCCCCcccccccccccccccccCCCeeEEEecCCcchhhhhchhhhcchHhhhhhhccCccc
Confidence 6 79999999999999764332234466776531 1224567899999999999999998765322
Q ss_pred -CeeEEEeCcccc-CcchHHHHHHHHHHc--CC-CEEEEEEcCCcccccccccccCCcCHHHHHhhcCceEEEEeCCCHH
Q 016903 166 -ACAVTYFGDGGT-SEGDFHAALNFSAVT--EA-PVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDAL 240 (380)
Q Consensus 166 -~~vv~~~GDG~~-~eG~~~Eal~~A~~~--~L-pvi~vv~NN~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~VdG~D~~ 240 (380)
...+.++||.++ +||.+.|.||+...- .. +.|+||.||+.+.+|......+.+...+.|+++++|+++|+|.||+
T Consensus 325 k~lpiliHGDAAfaGQGVV~Etlnls~~~gysvgGtiHiviNNQiGFTTsp~~sRSt~Y~TDvAKm~~aPifHVN~DDPE 404 (906)
T COG0567 325 KVLPILIHGDAAFAGQGVVAETLNLSRLDGYSVGGTWHIVINNQIGFTTSPADARSTPYCTDVAKMIEAPIFHVNADDPE 404 (906)
T ss_pred eeEEEEEecChhcCCccHHHHHHHhhCCCCcccCCeEEEEEecCCCCCCCcccccCCCCCCChhhccCCceeecccCCch
Confidence 456799999999 899999999999885 45 8999999999999998776667777779999999999999999999
Q ss_pred HHHHHHHHHHHHhhccCCcEEEEEEeecCCCCCCCCCCCCCCChhhHHHHHhcCChHHHHHHHHHHcCCCCHHHHHHHHH
Q 016903 241 AIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDDSTKYRPVDEIEWWRTTQDPVTRFRKWIESNGWWNGDIESELRS 320 (380)
Q Consensus 241 av~~a~~~a~~~ar~~~gP~lIe~~t~R~~gHs~~Dd~~~Yr~~~e~~~~~~~~DPi~~~~~~L~~~g~~t~~e~~~i~~ 320 (380)
++..+.+-|++++..++++++|++.|||.+||+++|+|. +..+..++..++...+...+.+.|+++|++|+++.+.+.+
T Consensus 405 Av~~a~~~A~e~R~~F~kDvvIDlvcYRr~GHNE~DePs-~TqP~mY~~I~~h~t~r~~ya~~Lv~~gvis~~~~~~~~~ 483 (906)
T COG0567 405 AVLFAPALALEYRNGFKKDVVIDLVCYRRHGHNEGDEPS-VTQPLMYQKIKKHPTVRKLYADKLIAEGVISEEEADELVN 483 (906)
T ss_pred hhhhhHHHHHHHHhhcCCCeeeecccCCCCCCCcccccc-ccCHHHHHHHhcCCChhhhHHHHHHhhccccHHHHHHHHH
Confidence 999999999999999999999999999999999999986 5677888888766788889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCccccccccC---------CCccHHHHHHHHHHHHHhCCCCCCCCC
Q 016903 321 SVRKQILHALQEAEKAEKPPISDLFTDVYDV---------SPSNLREQEHSLRETIKKHPQDYPSNV 378 (380)
Q Consensus 321 ~~~~~v~~a~~~a~~~p~p~~~~~~~~vy~~---------~~~~~~~~~~~l~~~~~~~p~~~~~~~ 378 (380)
+++..++..+...+... .-+.+...+.. .+....+.+++|...+.+.|+.|..++
T Consensus 484 ~~r~~L~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~t~v~~~~L~~L~~kl~~~Pe~f~~h~ 547 (906)
T COG0567 484 DYRDALDQGFEVVKEYK---EMDWLEGDWSGYLNAGLRHVDTGVPKKTLKELGKKLCTIPEGFEVHP 547 (906)
T ss_pred HHHHHhhhhhhHHhHHH---hhhccccccccccCCcccccccccCHHHHHHHHHHhhcCCcceehhH
Confidence 99999999888776554 11111111111 122234568889999999999998875
No 19
>KOG0451 consensus Predicted 2-oxoglutarate dehydrogenase, E1 subunit [Carbohydrate transport and metabolism]
Probab=99.96 E-value=1.8e-28 Score=243.37 Aligned_cols=305 Identities=17% Similarity=0.152 Sum_probs=248.5
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccchhhHHHHHHHhc------CCCCcEEEc-ccccHHHHHH-
Q 016903 31 VKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRISFYLTTSGEEAINIASAAA------IKNDDFVVP-QYREPGVLLW- 102 (380)
Q Consensus 31 ~~~~~e~l~~~y~~M~~~R~~e~~~~~~~~~g~i~~~~~~~G~Ea~~~~~~~~------l~~~D~v~~-~yR~~~~~l~- 102 (380)
..+.++++.++-+.|+++..||.++..+|.+-| -..+.|.|.+.+=.-.. -+..|+|++ .|||+..++.
T Consensus 152 e~l~keEr~~i~~Lmlksq~fD~FlatKFpTvK---RYGgEGAESM~aFF~eLl~~sa~~~ie~viigmpHRGRlnLlt~ 228 (913)
T KOG0451|consen 152 EQLGKEERCEIAELMLKSQAFDNFLATKFPTVK---RYGGEGAESMLAFFWELLRDSAQANIEHVIIGMPHRGRLNLLTA 228 (913)
T ss_pred HHhhHHHHHHHHHHHHhhhhHHHHHHhccchhh---hhccccHHHHHHHHHHHHHHHHhcCcceEEEeccccCcchHHHH
Confidence 357899999999999999999999988875422 11344555543222112 246799999 4999998885
Q ss_pred -cCCCHHHHHHHhhcCCCCCC---CCCCCccccCCC--------C--CCccccCcccccchHHHHHHHHHhhhcC-----
Q 016903 103 -RGFSMQEFANQCFGNKADYG---KGRQMPIHYGSN--------K--HNYFTVSSTIATQLPHAVGAAYALKMDR----- 163 (380)
Q Consensus 103 -~G~~~~~~~~e~~g~~~~~~---~G~~~~~H~~~~--------~--~~~~~~~g~lG~~lp~A~G~A~A~k~~~----- 163 (380)
..+++..||..+.|.+..+. .-+..-+|+.+. . .-+.++++++.+..|+|+|.+.+.+...
T Consensus 229 Ll~fpP~~mFRK~~G~sEFpE~~~A~gDVlSHl~sS~dykg~~~~lhvtMlpNPSHLEAvNPVAmGKtR~rqqsr~~Gdy 308 (913)
T KOG0451|consen 229 LLNFPPAKMFRKLSGASEFPEDIEAMGDVLSHLHSSEDYKGLGKKLHVTMLPNPSHLEAVNPVAMGKTRSRQQSRGEGDY 308 (913)
T ss_pred HhcCCHHHHHHHhcCcccCchhhhHHHHHHHHhhhhhhhcccCCceEEEecCChhhhhccCchhhcchhHHHHhhcCCCC
Confidence 68999999999999876542 122233444321 1 2356788999999999999999976531
Q ss_pred ---------CCCeeEEEeCcccc-CcchHHHHHHHHHH--cCC-CEEEEEEcCCcccccccccccCCcCHHHHHhhcCce
Q 016903 164 ---------KDACAVTYFGDGGT-SEGDFHAALNFSAV--TEA-PVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVR 230 (380)
Q Consensus 164 ---------~~~~vv~~~GDG~~-~eG~~~Eal~~A~~--~~L-pvi~vv~NN~~~~~~~~~~~~~~~~~~~~a~a~G~~ 230 (380)
..-..+.++|||+| .||.++|+++++-. +++ ..|++|.||+.+.++|.+...+....++++++++++
T Consensus 309 spd~sa~~Gd~Vlnv~vHGDaaF~GQGiv~E~~~ls~~PHFrvGGsvHLivNNQvgfTtp~~rGRSs~ycsDiaK~~~~p 388 (913)
T KOG0451|consen 309 SPDSSAPFGDHVLNVIVHGDAAFAGQGIVQECLNLSYVPHFRVGGSVHLIVNNQVGFTTPGDRGRSSAYCSDIAKSIQAP 388 (913)
T ss_pred CCCCcCCCCCceEEEEEecchhhccCcccHHHHhhccCCceeecceEEEEecccccccCcccccccchhhhHHHHHhCCC
Confidence 11256778999999 89999999999764 667 699999999999999999888888888999999999
Q ss_pred EEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCCCCCCCCCCCCCCChhhHHHHHhcCChHH-HHHHHHHHcCC
Q 016903 231 SIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDDSTKYRPVDEIEWWRTTQDPVT-RFRKWIESNGW 309 (380)
Q Consensus 231 ~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t~R~~gHs~~Dd~~~Yr~~~e~~~~~~~~DPi~-~~~~~L~~~g~ 309 (380)
+++|+|.|+++|.++.+-|++|-|+.++.++|+..|||.+||++.||| .|.++-.++..+ ++..++ .|.+.|++.|+
T Consensus 389 viHVNGD~PEevvraTrLAf~Yqr~FRKDvfIdL~CfRrwgHnelddp-~ftspvmyk~v~-aReSvPdlya~~L~~eg~ 466 (913)
T KOG0451|consen 389 VIHVNGDDPEEVVRATRLAFRYQREFRKDVFIDLNCFRRWGHNELDDP-TFTSPVMYKEVE-ARESVPDLYAQQLAKEGV 466 (913)
T ss_pred EEEeCCCCHHHHHHHHHHHHHHHHHhhhhheeehHHHHHhccccccCc-cccChhHHHHHH-hhhcccHHHHHHHHhccc
Confidence 999999999999999999999999999999999999999999999998 589998888886 466665 58999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Q 016903 310 WNGDIESELRSSVRKQILHALQEAEKAEKPP 340 (380)
Q Consensus 310 ~t~~e~~~i~~~~~~~v~~a~~~a~~~p~p~ 340 (380)
+|++++++++++.-+.+.+.++.+..+.+|+
T Consensus 467 ~tee~vkE~~~~y~~~Ln~eL~~~~~y~Pp~ 497 (913)
T KOG0451|consen 467 LTEEKVKEMRDEYMKYLNEELALAPAYQPPP 497 (913)
T ss_pred ccHHHHHHHHHHHHHHHHHHHhcCCccCCCc
Confidence 9999999999999999999999888775554
No 20
>PRK12754 transketolase; Reviewed
Probab=99.96 E-value=1.9e-27 Score=251.01 Aligned_cols=178 Identities=25% Similarity=0.274 Sum_probs=149.5
Q ss_pred cEEEcc--cccH---HHHHHcCC-CHHHHHHHhhcCCCCCCCCCCCccccCCC-CCCccccCcccccchHHHHHHHHHhh
Q 016903 88 DFVVPQ--YREP---GVLLWRGF-SMQEFANQCFGNKADYGKGRQMPIHYGSN-KHNYFTVSSTIATQLPHAVGAAYALK 160 (380)
Q Consensus 88 D~v~~~--yR~~---~~~l~~G~-~~~~~~~e~~g~~~~~~~G~~~~~H~~~~-~~~~~~~~g~lG~~lp~A~G~A~A~k 160 (380)
|.++.+ |... +.+...|+ ...+-+.+|+. .|+..++|+... .+++..++|++|+|+++|+|+|+|.|
T Consensus 58 DRfvlS~GH~~~~lYa~l~~~G~~~~~e~L~~fr~------~gs~~~gHpe~~~~pgve~stG~LGqGl~~AvG~AlA~k 131 (663)
T PRK12754 58 DRFVLSNGHGSMLIYSLLHLTGYDLPMEELKNFRQ------LHSKTPGHPEVGYTAGVETTTGPLGQGIANAVGMAIAEK 131 (663)
T ss_pred CeEEEeCccHHHHHHHHHHHcCCCCCHHHHHHhcc------CCCCCCCCCCCCCCCCccccCCcccchHHHHHHHHHHHH
Confidence 775554 4432 23345786 33344555654 377788998763 57888999999999999999999999
Q ss_pred hcC----------CCCeeEEEeCccccCcchHHHHHHHHHHcCCC-EEEEEEcCCcccccccccccCCcCHHHHHhhcCc
Q 016903 161 MDR----------KDACAVTYFGDGGTSEGDFHAALNFSAVTEAP-VIFICRNNGWAISTPISDQFRSDGAVVKGRAYGV 229 (380)
Q Consensus 161 ~~~----------~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lp-vi~vv~NN~~~~~~~~~~~~~~~~~~~~a~a~G~ 229 (380)
+.+ .+.+|+|++|||+++||.+|||+++|+.++|| +|+||+||++++++++.... ..++.+++++|||
T Consensus 132 ~~~~~~~~~~~~~~~~~v~~~~GDGel~EG~~~EA~~~A~~~kL~nLi~ivD~N~~~idg~~~~~~-~~~~~~r~~a~Gw 210 (663)
T PRK12754 132 TLAAQFNRPGHDIVDHYTYAFMGDGCMMEGISHEVCSLAGTLKLGKLIAFYDDNGISIDGHVEGWF-TDDTAMRFEAYGW 210 (663)
T ss_pred HhhhccCcccccccCCEEEEEECcchhhchHHHHHHHHHHHhCCCCEEEEEEcCCCccCcchhhcc-CccHHHHHHhcCC
Confidence 875 37899999999999999999999999999996 89999999999999998876 5799999999999
Q ss_pred eEEE-EeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCCCCCCC
Q 016903 230 RSIR-VDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTS 275 (380)
Q Consensus 230 ~~~~-VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t~R~~gHs~~ 275 (380)
++++ |||||++++.+|+++|... .++|++|+++|++.+|.+..
T Consensus 211 ~vi~vvDG~D~~ai~~A~~~a~~~---~~~Pt~I~~~T~~g~G~~~~ 254 (663)
T PRK12754 211 HVIRGIDGHDADSIKRAVEEARAV---TDKPSLLMCKTIIGFGSPNK 254 (663)
T ss_pred eEEeeECCCCHHHHHHHHHHHHhc---CCCCEEEEEEeeeccCcccc
Confidence 9999 8999999999999887643 57899999999999998753
No 21
>TIGR00232 tktlase_bact transketolase, bacterial and yeast. This model is designed to capture orthologs of bacterial transketolases. The group includes two from the yeast Saccharomyces cerevisiae but excludes dihydroxyactetone synthases (formaldehyde transketolases) from various yeasts and the even more distant mammalian transketolases. Among the family of thiamine diphosphate-dependent enzymes that includes transketolases, dihydroxyacetone synthases, pyruvate dehydrogenase E1-beta subunits, and deoxyxylulose-5-phosphate synthases, mammalian and bacterial transketolases seem not to be orthologous.
Probab=99.96 E-value=2.6e-27 Score=251.05 Aligned_cols=179 Identities=22% Similarity=0.246 Sum_probs=148.4
Q ss_pred cEEEcc--cccH---HHHHHcCCC-HHHHHHHhhcCCCCCCCCCCCccccCC-CCCCccccCcccccchHHHHHHHHHhh
Q 016903 88 DFVVPQ--YREP---GVLLWRGFS-MQEFANQCFGNKADYGKGRQMPIHYGS-NKHNYFTVSSTIATQLPHAVGAAYALK 160 (380)
Q Consensus 88 D~v~~~--yR~~---~~~l~~G~~-~~~~~~e~~g~~~~~~~G~~~~~H~~~-~~~~~~~~~g~lG~~lp~A~G~A~A~k 160 (380)
|.++.+ |... +.+...|+. ..+-+..|+. .|+.+++||.. ..+++...+|++|+|+++|+|+|+|.|
T Consensus 54 DrfvlS~GH~~~~lYa~l~~~G~~~~~e~L~~fr~------~~s~~~ghp~~~~~~gi~~~tG~lG~gl~~AvG~Ala~k 127 (653)
T TIGR00232 54 DRFVLSNGHGSMLLYSLLHLTGYDLSIEDLKQFRQ------LHSKTPGHPEFGHTAGVEATTGPLGQGIANAVGMAIAQK 127 (653)
T ss_pred CeEEEECccHHHHHHHHHHHcCCCCCHHHHHhccc------CCCCCCCCCCCCCCCCeeeCCcchhccHHHHHHHHHHHH
Confidence 765554 4432 234457864 4444556654 37778999976 457888899999999999999999999
Q ss_pred hcC----------CCCeeEEEeCccccCcchHHHHHHHHHHcCCC-EEEEEEcCCcccccccccccCCcCHHHHHhhcCc
Q 016903 161 MDR----------KDACAVTYFGDGGTSEGDFHAALNFSAVTEAP-VIFICRNNGWAISTPISDQFRSDGAVVKGRAYGV 229 (380)
Q Consensus 161 ~~~----------~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lp-vi~vv~NN~~~~~~~~~~~~~~~~~~~~a~a~G~ 229 (380)
+.+ .+.+|+|++|||+++||.+|||+++|+.++|| +|+||+||+|++++++.... ..++.+++++|||
T Consensus 128 ~~~~~~~~~~~~~~~~~v~~~~GDG~l~EG~~~EA~~~A~~~~L~nLi~ivd~N~~~i~~~~~~~~-~~~~~~~~~a~Gw 206 (653)
T TIGR00232 128 TLAATFNKPGFEIVDHYTYVFVGDGCLQEGISYEVASLAGHLKLGKLIVLYDSNRISIDGAVDGSF-TEDVAKRFEAYGW 206 (653)
T ss_pred HHhhhccCCccCCcCCEEEEEEccccccccHHHHHHHHHHHhCCCcEEEEEeCCCeeecccccccc-CccHHHHHHhcCC
Confidence 863 37789999999999999999999999999996 99999999999999998876 5789999999999
Q ss_pred eEEEE-eCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCCCCCCCC
Q 016903 230 RSIRV-DGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSD 276 (380)
Q Consensus 230 ~~~~V-dG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t~R~~gHs~~D 276 (380)
++++| ||||+.++.+|+++|.+ ..++|++|+++|+|.+|.+...
T Consensus 207 ~~~~v~DG~D~~ai~~A~~~a~~---~~~~P~~I~~~T~~g~G~~~~e 251 (653)
T TIGR00232 207 EVLEVEDGHDLAAIDAAIEEAKA---SKDKPTLIEVTTTIGFGSPNKA 251 (653)
T ss_pred cEEEeCCCCCHHHHHHHHHHHHh---CCCCCEEEEEEeeecccCcccC
Confidence 99999 99999999988877643 1248999999999999987443
No 22
>cd02012 TPP_TK Thiamine pyrophosphate (TPP) family, Transketolase (TK) subfamily, TPP-binding module; TK catalyzes the transfer of a two-carbon unit from ketose phosphates to aldose phosphates. In heterotrophic organisms, TK provides a link between glycolysis and the pentose phosphate pathway and provides precursors for nucleotide, aromatic amino acid and vitamin biosynthesis. In addition, the enzyme plays a central role in the Calvin cycle in plants. Typically, TKs are homodimers. They require TPP and divalent cations, such as magnesium ions, for activity.
Probab=99.96 E-value=1.4e-27 Score=226.59 Aligned_cols=182 Identities=26% Similarity=0.300 Sum_probs=153.3
Q ss_pred CcEE-Ec-ccccHH---HHHHcCCCHHHHHHHhhcCCCCCCCCCCCccccCCCC-CCccccCcccccchHHHHHHHHHhh
Q 016903 87 DDFV-VP-QYREPG---VLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNK-HNYFTVSSTIATQLPHAVGAAYALK 160 (380)
Q Consensus 87 ~D~v-~~-~yR~~~---~~l~~G~~~~~~~~e~~g~~~~~~~G~~~~~H~~~~~-~~~~~~~g~lG~~lp~A~G~A~A~k 160 (380)
.|.+ ++ .|...+ .+...|+..++-+..+.. .|+.+++|+.... +++...+|++|+++|.|+|+|+|.+
T Consensus 49 rd~~v~s~gH~~~~~ya~l~~~g~~~~~~l~~~~~------~gs~l~gh~~~~~~~g~~~~~GslG~gl~~avG~Ala~~ 122 (255)
T cd02012 49 RDRFVLSKGHASPALYAVLALAGYLPEEDLKTFRQ------LGSRLPGHPEYGLTPGVEVTTGSLGQGLSVAVGMALAEK 122 (255)
T ss_pred CCeEEEcCCcHHHHHHHHHHHcCCCCHHHHHHhcc------cCCCCCCCCCCCCCCCeeeCCcchhhHHHHHHHHHHHHH
Confidence 3543 33 355544 455688766666666643 3667888987644 4778889999999999999999999
Q ss_pred hcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCC-EEEEEEcCCcccccccccccCCcCHHHHHhhcCceEEEEeCCCH
Q 016903 161 MDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAP-VIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDA 239 (380)
Q Consensus 161 ~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lp-vi~vv~NN~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~VdG~D~ 239 (380)
+.+++++|+|++|||++++|.+||++++|++++|| +++|++||+|++++++.......++++++++|||+++.|||||+
T Consensus 123 ~~~~~~~v~~i~GDG~~~~G~~~eal~~a~~~~l~~li~vvdnN~~~~~~~~~~~~~~~~~~~~~~a~G~~~~~v~G~d~ 202 (255)
T cd02012 123 LLGFDYRVYVLLGDGELQEGSVWEAASFAGHYKLDNLIAIVDSNRIQIDGPTDDILFTEDLAKKFEAFGWNVIEVDGHDV 202 (255)
T ss_pred HhCCCCEEEEEECcccccccHHHHHHHHHHHcCCCcEEEEEECCCccccCcHhhccCchhHHHHHHHcCCeEEEECCCCH
Confidence 99999999999999999999999999999999995 99999999999998876666778999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhccCCcEEEEEEeecCCCCCCCCC
Q 016903 240 LAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDD 277 (380)
Q Consensus 240 ~av~~a~~~a~~~ar~~~gP~lIe~~t~R~~gHs~~Dd 277 (380)
+++.+++++|.+. .++|++|+++|.|..||+..++
T Consensus 203 ~~l~~al~~a~~~---~~~P~~I~~~t~kg~g~~~~e~ 237 (255)
T cd02012 203 EEILAALEEAKKS---KGKPTLIIAKTIKGKGVPFMEN 237 (255)
T ss_pred HHHHHHHHHHHHc---CCCCEEEEEEeecccccCccCC
Confidence 9999999988753 2789999999999999986543
No 23
>PF00456 Transketolase_N: Transketolase, thiamine diphosphate binding domain; InterPro: IPR005474 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; PDB: 3M49_B 1NGS_B 1TKA_A 1TRK_B 1TKB_A 1GPU_B 1AY0_B 1TKC_B 3HYL_A 3RIM_A ....
Probab=99.96 E-value=5.9e-28 Score=236.07 Aligned_cols=179 Identities=28% Similarity=0.348 Sum_probs=140.3
Q ss_pred CcEEEcccccHH------HHHHcCC-CHHHHHHHhhcCCCCCCCCCCCccccC-CCCCCccccCcccccchHHHHHHHHH
Q 016903 87 DDFVVPQYREPG------VLLWRGF-SMQEFANQCFGNKADYGKGRQMPIHYG-SNKHNYFTVSSTIATQLPHAVGAAYA 158 (380)
Q Consensus 87 ~D~v~~~yR~~~------~~l~~G~-~~~~~~~e~~g~~~~~~~G~~~~~H~~-~~~~~~~~~~g~lG~~lp~A~G~A~A 158 (380)
.|.++.+ .||+ .+...|+ ...+-+..++. .|+.+++||. ...+++..++|+||+|+++|+|+|+|
T Consensus 54 rDrfvlS-kGH~~~~lYa~l~~~G~~~~~~~L~~fr~------~~s~~~gHP~~~~~~gie~stGsLGqGl~~avG~Ala 126 (332)
T PF00456_consen 54 RDRFVLS-KGHASPALYAILALRGYDLSEEDLKTFRQ------LGSRLPGHPEYGKTPGIEASTGSLGQGLSIAVGMALA 126 (332)
T ss_dssp S-EEEES-SGGGHHHHHHHHHHTTSSS-HHHHTTTTS------TTSSSSSSTTTTTSTT-SS--SSTTHHHHHHHHHHHH
T ss_pred CCcEEEe-ccchhHHHHHHHHHhcCCCCHHHHHHhcc------CCCCCCCCCcccCCceeEeeccchhcchhhHHHHHHH
Confidence 4776665 4553 3334787 55555666654 4788999998 45678888999999999999999999
Q ss_pred hhhcC----------CCCeeEEEeCccccCcchHHHHHHHHHHcCC-CEEEEEEcCCcccccccccccCCcCHHHHHhhc
Q 016903 159 LKMDR----------KDACAVTYFGDGGTSEGDFHAALNFSAVTEA-PVIFICRNNGWAISTPISDQFRSDGAVVKGRAY 227 (380)
Q Consensus 159 ~k~~~----------~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~L-pvi~vv~NN~~~~~~~~~~~~~~~~~~~~a~a~ 227 (380)
.|+.+ .+.+|+|++|||+++||.+|||+.+|+.++| ++|+|+++|+.++++++.... ..++.+++++|
T Consensus 127 ~k~~~~~~n~~~~~~~~~~vy~l~GDGel~EG~~~EA~~~A~~~~L~nLi~i~D~N~~q~dg~~~~~~-~~~~~~k~~a~ 205 (332)
T PF00456_consen 127 EKMLGARFNKPGFDIIDHRVYVLMGDGELQEGSVWEAASLAGHYKLDNLIVIYDSNGIQIDGPTDIVF-SEDIAKKFEAF 205 (332)
T ss_dssp HHHHHHHHHBTTBSTTT--EEEEEEHHHHHSHHHHHHHHHHHHTT-TTEEEEEEEESEETTEEGGGTH-HSHHHHHHHHT
T ss_pred HHHHHhhhcccccccccceEEEEecCccccchhhHHHHHHHHHhCCCCEEEEEecCCcccCCCccccc-chHHHHHHHHh
Confidence 98642 3578999999999999999999999999999 799999999999999987654 46789999999
Q ss_pred CceEEEE-eCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCCCCCCCC
Q 016903 228 GVRSIRV-DGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSD 276 (380)
Q Consensus 228 G~~~~~V-dG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t~R~~gHs~~D 276 (380)
||.+++| ||||++++++|+.+|.. ..++|++|.++|...+|.+...
T Consensus 206 Gw~v~~v~dGhd~~~i~~A~~~a~~---~~~kP~~Ii~~TvkG~G~~~~e 252 (332)
T PF00456_consen 206 GWNVIEVCDGHDVEAIYAAIEEAKA---SKGKPTVIIARTVKGKGVPFME 252 (332)
T ss_dssp T-EEEEEEETTBHHHHHHHHHHHHH---STSS-EEEEEEE-TTTTSTTTT
T ss_pred hhhhcccccCcHHHHHHHHHHHHHh---cCCCCceeecceEEecCchhhc
Confidence 9999998 99999999999998865 2479999999999999986554
No 24
>PRK12753 transketolase; Reviewed
Probab=99.96 E-value=2.8e-27 Score=250.76 Aligned_cols=180 Identities=22% Similarity=0.212 Sum_probs=151.4
Q ss_pred cEEEc--cccc---HHHHHHcCC-CHHHHHHHhhcCCCCCCCCCCCccccCC-CCCCccccCcccccchHHHHHHHHHhh
Q 016903 88 DFVVP--QYRE---PGVLLWRGF-SMQEFANQCFGNKADYGKGRQMPIHYGS-NKHNYFTVSSTIATQLPHAVGAAYALK 160 (380)
Q Consensus 88 D~v~~--~yR~---~~~~l~~G~-~~~~~~~e~~g~~~~~~~G~~~~~H~~~-~~~~~~~~~g~lG~~lp~A~G~A~A~k 160 (380)
|.++. .|.. .+++...|+ ...+-|..|+. .|+..++|+.. ..+++..++|++|+|+++|+|+|+|.|
T Consensus 58 Drfvls~GH~~~~lYa~l~~~G~~~~~e~L~~fr~------~~s~~~ghp~~~~~pgve~~tG~lG~gl~~AvG~A~A~k 131 (663)
T PRK12753 58 DRFILSNGHASMLLYSLLHLTGYDLPIEELKNFRQ------LHSKTPGHPEIGYTPGVETTTGPLGQGLANAVGLAIAER 131 (663)
T ss_pred CcEEEecccHHHHHHHHHHHhCCCCCHHHHHHhcc------CCCCCCCCCCCCCCCCcccCCCcccccHHHHHHHHHHHH
Confidence 66554 3555 344556785 44455666654 36677889876 357888899999999999999999999
Q ss_pred hcCC----------CCeeEEEeCccccCcchHHHHHHHHHHcCCC-EEEEEEcCCcccccccccccCCcCHHHHHhhcCc
Q 016903 161 MDRK----------DACAVTYFGDGGTSEGDFHAALNFSAVTEAP-VIFICRNNGWAISTPISDQFRSDGAVVKGRAYGV 229 (380)
Q Consensus 161 ~~~~----------~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lp-vi~vv~NN~~~~~~~~~~~~~~~~~~~~a~a~G~ 229 (380)
+.+. +.+|+|++|||+++||.+|||+++|+.++|| +|+||+||++++++++.... ..++.+++++|||
T Consensus 132 ~~~~~~~~~~~~~~~~~v~~~~GDGel~EG~~~EA~~~A~~~kL~nLi~ivd~N~~~i~~~~~~~~-~~~~~~~f~a~Gw 210 (663)
T PRK12753 132 TLAAQFNRPGHEIVDHYTYVFMGDGCLMEGISHEVCSLAGTLGLGKLIGFYDHNGISIDGETEGWF-TDDTAKRFEAYHW 210 (663)
T ss_pred HhhhhcCCccccccCCEEEEEECcCccccHHHHHHHHHHHHHCCCCEEEEEECCCCcCCCChhhhc-ChhHHHHHHHcCC
Confidence 8752 6899999999999999999999999999995 99999999999999988765 5789999999999
Q ss_pred eEEE-EeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCCCCCCCCC
Q 016903 230 RSIR-VDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDD 277 (380)
Q Consensus 230 ~~~~-VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t~R~~gHs~~Dd 277 (380)
+++. |||||+.++++++++|.+. .++|++|+++|++.+|++...+
T Consensus 211 ~~~~~vDGhD~~~i~~a~~~a~~~---~~~P~~I~~~T~kG~G~~~~e~ 256 (663)
T PRK12753 211 HVIHEIDGHDPQAIKEAILEAQSV---KDKPSLIICRTIIGFGSPNKAG 256 (663)
T ss_pred eEEceeCCCCHHHHHHHHHHHHHC---CCCeEEEEEEEeecCCCCcccC
Confidence 9995 9999999999999988752 5789999999999999986543
No 25
>PRK05899 transketolase; Reviewed
Probab=99.96 E-value=1e-26 Score=246.13 Aligned_cols=185 Identities=25% Similarity=0.250 Sum_probs=153.6
Q ss_pred CcEEEcc--ccc---HHHHHHcCC-CHHHHHHHhhcCCCCCCCCCCCccccCCC-CCCccccCcccccchHHHHHHHHHh
Q 016903 87 DDFVVPQ--YRE---PGVLLWRGF-SMQEFANQCFGNKADYGKGRQMPIHYGSN-KHNYFTVSSTIATQLPHAVGAAYAL 159 (380)
Q Consensus 87 ~D~v~~~--yR~---~~~~l~~G~-~~~~~~~e~~g~~~~~~~G~~~~~H~~~~-~~~~~~~~g~lG~~lp~A~G~A~A~ 159 (380)
.|.++.+ |-. .+++...|+ ..++-+..+.. .|+.++.|+... .+++...+|++|+++|.|+|+|+|.
T Consensus 61 ~Dr~i~s~GH~~~~~Ya~l~~~G~~~~~~~l~~~~~------~~~~~~~~p~~~~~~~~~~~~G~lG~gl~~AiG~Ala~ 134 (624)
T PRK05899 61 RDRFVLSAGHGSMLLYSLLHLAGYDLSIDDLKNFRQ------LGSKTPGHPEYGHTPGVETTTGPLGQGLANAVGMALAE 134 (624)
T ss_pred CCEEEEEChhHHHHHHHHHHHcCCCCCHHHHHHhcC------CCCCCCCCCCCCCCCCeeeCCcchhhhHHHHHHHHHHH
Confidence 4776554 555 345667897 55555666643 245567887753 4677778999999999999999999
Q ss_pred hhcCC----------CCeeEEEeCccccCcchHHHHHHHHHHcCCC-EEEEEEcCCcccccccccccCCcCHHHHHhhcC
Q 016903 160 KMDRK----------DACAVTYFGDGGTSEGDFHAALNFSAVTEAP-VIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 228 (380)
Q Consensus 160 k~~~~----------~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lp-vi~vv~NN~~~~~~~~~~~~~~~~~~~~a~a~G 228 (380)
++.+. +++|+|++|||++++|.+||+|++|+.++|| +|+|++||+|+++++.... ...++.+++++||
T Consensus 135 ~~~~~~~~~~~~~~~~~~v~~v~GDG~~~~g~~~Eal~~A~~~~L~~li~v~dnN~~~~~~~~~~~-~~~~~~~~~~a~G 213 (624)
T PRK05899 135 KYLAALFNRPGLDIVDHYTYVLCGDGDLMEGISHEACSLAGHLKLGNLIVIYDDNRISIDGPTEGW-FTEDVKKRFEAYG 213 (624)
T ss_pred HHhhhhcCCccccCcCCeEEEEECcchhhchHHHHHHHHHHHhCCCCEEEEEECCCCccccccccc-ccccHHHHhccCC
Confidence 98776 7899999999999999999999999999996 9999999999999877643 3578999999999
Q ss_pred ceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCCCCCCCCCCCCCC
Q 016903 229 VRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDDSTKYR 282 (380)
Q Consensus 229 ~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t~R~~gHs~~Dd~~~Yr 282 (380)
|++++|||||+.++.+++++|.+ .++|++|++.|.|.+||+..+++..|+
T Consensus 214 ~~~~~VdG~d~~~l~~al~~a~~----~~~P~vI~v~t~kg~g~~~~e~~~~~H 263 (624)
T PRK05899 214 WHVIEVDGHDVEAIDAAIEEAKA----STKPTLIIAKTIIGKGAPNKEGTHKVH 263 (624)
T ss_pred CeEEEECCCCHHHHHHHHHHHHh----cCCCEEEEEEeEeccCCccccCCCccc
Confidence 99999999999999999998875 368999999999999999777655555
No 26
>PTZ00089 transketolase; Provisional
Probab=99.96 E-value=3.3e-27 Score=250.50 Aligned_cols=195 Identities=22% Similarity=0.211 Sum_probs=160.6
Q ss_pred CcEEEc--cccc---HHHHHHcCC-CHHHHHHHhhcCCCCCCCCCCCccccCCC-CCCccccCcccccchHHHHHHHHHh
Q 016903 87 DDFVVP--QYRE---PGVLLWRGF-SMQEFANQCFGNKADYGKGRQMPIHYGSN-KHNYFTVSSTIATQLPHAVGAAYAL 159 (380)
Q Consensus 87 ~D~v~~--~yR~---~~~~l~~G~-~~~~~~~e~~g~~~~~~~G~~~~~H~~~~-~~~~~~~~g~lG~~lp~A~G~A~A~ 159 (380)
.|.++. .|.. .+++...|+ ...+-+..+.. .|+..++|+... .+++...+|++|++++.|+|+|+|.
T Consensus 59 rDr~vls~GH~~~~lYa~l~l~G~~~~~~~l~~fr~------~~s~~~ghp~~~~~~gv~~~tG~lG~gls~AvG~A~a~ 132 (661)
T PTZ00089 59 RDRFVLSNGHASALLYSMLHLTGYDLSMEDLKNFRQ------LGSRTPGHPERHITPGVEVTTGPLGQGIANAVGLAIAE 132 (661)
T ss_pred CCEEEEeCcchHHHHHHHHHHcCCCCCHHHHHhcCC------CCCCCCCCCCCCCCCCcccCCcchhhhHHHHHHHHHHH
Confidence 477554 4666 456677886 44555666654 356667898753 5678888999999999999999999
Q ss_pred hhcCC----------CCeeEEEeCccccCcchHHHHHHHHHHcCCC-EEEEEEcCCcccccccccccCCcCHHHHHhhcC
Q 016903 160 KMDRK----------DACAVTYFGDGGTSEGDFHAALNFSAVTEAP-VIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 228 (380)
Q Consensus 160 k~~~~----------~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lp-vi~vv~NN~~~~~~~~~~~~~~~~~~~~a~a~G 228 (380)
|+.+. +.+|+|++|||+++||.+|||+|+|+.++|| +|+||+||++++++++.... ..++.+++++||
T Consensus 133 k~~~~~~~~~~~~~~~~~v~~v~GDG~l~eG~~~EAl~~A~~~~L~nLi~i~d~N~~~i~~~~~~~~-~~~~~~~f~a~G 211 (661)
T PTZ00089 133 KHLAAKFNRPGHPIFDNYVYVICGDGCLQEGVSQEALSLAGHLGLEKLIVLYDDNKITIDGNTDLSF-TEDVEKKYEAYG 211 (661)
T ss_pred HHHhhhccCccccCcCCEEEEEECccchhhHHHHHHHHHHHHhCCCCEEEEEECCCcccccCccccc-CccHHHHHHhcC
Confidence 98653 7899999999999999999999999999995 99999999999999987653 578999999999
Q ss_pred ceEEEE-eCC-CHHHHHHHHHHHHHHhhccCCcEEEEEEeecCCCCCCCCCCC---CCCChhhHHHHH
Q 016903 229 VRSIRV-DGN-DALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDDST---KYRPVDEIEWWR 291 (380)
Q Consensus 229 ~~~~~V-dG~-D~~av~~a~~~a~~~ar~~~gP~lIe~~t~R~~gHs~~Dd~~---~Yr~~~e~~~~~ 291 (380)
|+++.| ||| |+.++++++++|.+. .++|++|+++|+|.+||...+... .+.+++|++.++
T Consensus 212 ~~~i~v~dG~~D~~~l~~a~~~a~~~---~~~P~~I~~~T~kG~G~~~e~~~~~H~~~~~~~~~~~~~ 276 (661)
T PTZ00089 212 WHVIEVDNGNTDFDGLRKAIEEAKKS---KGKPKLIIVKTTIGYGSSKAGTEKVHGAPLGDEDIAQVK 276 (661)
T ss_pred CcEEEeCCCCCCHHHHHHHHHHHHhc---CCCcEEEEEEeeecCCCCcCCCCCccCCCCCHHHHHHHH
Confidence 999999 999 999999999988753 368999999999999986655322 356677777765
No 27
>cd02007 TPP_DXS Thiamine pyrophosphate (TPP) family, DXS subfamily, TPP-binding module; 1-Deoxy-D-xylulose-5-phosphate synthase (DXS) is a regulatory enzyme of the mevalonate-independent pathway involved in terpenoid biosynthesis. Terpeniods are plant natural products with important pharmaceutical activity. DXS catalyzes a transketolase-type condensation of pyruvate with D-glyceraldehyde-3-phosphate to form 1-deoxy-D-xylulose-5-phosphate (DXP) and carbon dioxide. The formation of DXP leads to the formation of the terpene precursor IPP (isopentyl diphosphate) and to the formation of thiamine (vitamin B1) and pyridoxal (vitamin B6).
Probab=99.95 E-value=2.5e-27 Score=216.18 Aligned_cols=167 Identities=19% Similarity=0.193 Sum_probs=137.5
Q ss_pred CCcEEEcc--cccHHHHHHcCCCHHHHHHHhhcCCCCCCCCCCCccccCCCC-CCccccCcccccchHHHHHHHHHhhhc
Q 016903 86 NDDFVVPQ--YREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNK-HNYFTVSSTIATQLPHAVGAAYALKMD 162 (380)
Q Consensus 86 ~~D~v~~~--yR~~~~~l~~G~~~~~~~~e~~g~~~~~~~G~~~~~H~~~~~-~~~~~~~g~lG~~lp~A~G~A~A~k~~ 162 (380)
+.|.++.+ |...+++...|. ++-+.++.. .|+ +++|+.... +++..++|++|+++|+|+|+|+|.|++
T Consensus 24 ~rDr~ils~gH~~~~~~~~~g~--~~~l~~~~~------~~~-~~g~p~~~~~~~~~~~~G~lG~gl~~A~G~Ala~k~~ 94 (195)
T cd02007 24 PKDKIIWDVGHQAYPHKILTGR--RDQFHTLRQ------YGG-LSGFTKRSESEYDAFGTGHSSTSISAALGMAVARDLK 94 (195)
T ss_pred CCCeEEEecccHHHHHHHHHCC--HHHHhhhhc------CCC-CCCCCcCCCCCCceECCCchhhhHHHHHHHHHHHHHh
Confidence 34655543 555455555665 344555653 244 888876543 566778999999999999999999999
Q ss_pred CCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCcCHHHHHhhcCceEEE-EeCCCHHH
Q 016903 163 RKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIR-VDGNDALA 241 (380)
Q Consensus 163 ~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~-VdG~D~~a 241 (380)
+.+++|+|++|||+++||++||++++|+.+++|+|+||+||+|++++++. +..++++++||.... |||||+++
T Consensus 95 ~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~~~li~vvdnN~~~~~~~~~------~~~~~~~a~G~~~~~~vdG~d~~~ 168 (195)
T cd02007 95 GKKRKVIAVIGDGALTGGMAFEALNNAGYLKSNMIVILNDNEMSISPNVG------TPGNLFEELGFRYIGPVDGHNIEA 168 (195)
T ss_pred CCCCeEEEEEcccccccChHHHHHHHHHHhCCCEEEEEECCCcccCCCCC------CHHHHHHhcCCCccceECCCCHHH
Confidence 99999999999999999999999999999988999999999999987765 477889999999996 99999999
Q ss_pred HHHHHHHHHHHhhccCCcEEEEEEeecCCC
Q 016903 242 IYSAVHAAREMAIGEGRPILIEALTYRVGH 271 (380)
Q Consensus 242 v~~a~~~a~~~ar~~~gP~lIe~~t~R~~g 271 (380)
+.+++++|.+ .++|++|+++|.+.+|
T Consensus 169 l~~a~~~a~~----~~~P~~I~~~T~kg~g 194 (195)
T cd02007 169 LIKVLKEVKD----LKGPVLLHVVTKKGKG 194 (195)
T ss_pred HHHHHHHHHh----CCCCEEEEEEEecccC
Confidence 9999887653 5799999999998765
No 28
>cd02017 TPP_E1_EcPDC_like Thiamine pyrophosphate (TPP) family, E1 of E. coli PDC-like subfamily, TPP-binding module; composed of proteins similar to the E1 component of the Escherichia coli pyruvate dehydrogenase multienzyme complex (PDC). PDC catalyzes the oxidative decarboxylation of pyruvate and the subsequent acetylation of coenzyme A to acetyl-CoA. The E1 component of PDC catalyzes the first step of the multistep process, using TPP and a divalent cation as cofactors. E. coli PDC is a homodimeric enzyme.
Probab=99.95 E-value=2.4e-26 Score=225.89 Aligned_cols=184 Identities=18% Similarity=0.122 Sum_probs=152.9
Q ss_pred HhcCCC------CcEEEc-cccc---HHHHHHcCCCHHHHHHHhhcCCCCCCCCC--CCccccCCC-CC-CccccCcccc
Q 016903 81 AAAIKN------DDFVVP-QYRE---PGVLLWRGFSMQEFANQCFGNKADYGKGR--QMPIHYGSN-KH-NYFTVSSTIA 146 (380)
Q Consensus 81 ~~~l~~------~D~v~~-~yR~---~~~~l~~G~~~~~~~~e~~g~~~~~~~G~--~~~~H~~~~-~~-~~~~~~g~lG 146 (380)
...|+. .|.|++ .|.. ++++...|+...+-+..|+.. |+ +++.|+... .+ ++..++|++|
T Consensus 48 ~~~l~~~p~~~~RDRvlSkGHas~~lYA~L~l~G~~~~edL~~fr~~------gs~p~l~g~p~~~~~~~gve~sTGSLG 121 (386)
T cd02017 48 NHFFRARGEGGGGDLVYFQGHASPGIYARAFLEGRLTEEQLDNFRQE------VGGGGLSSYPHPWLMPDFWEFPTVSMG 121 (386)
T ss_pred HHhcCCCCCCCCCCEEEeCCcccHHHHHHHHHcCCCCHHHHHhhccC------CCCCCCCCCCCCCCCCCCeeeCCchHH
Confidence 346764 688665 3444 244566897655667777653 44 577777543 23 4788899999
Q ss_pred cchHHHHHHHHHhhh-------cCCCCeeEEEeCccccCcchHHHHHHHHHHcCC-CEEEEEEcCCcccccccccc-cCC
Q 016903 147 TQLPHAVGAAYALKM-------DRKDACAVTYFGDGGTSEGDFHAALNFSAVTEA-PVIFICRNNGWAISTPISDQ-FRS 217 (380)
Q Consensus 147 ~~lp~A~G~A~A~k~-------~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~L-pvi~vv~NN~~~~~~~~~~~-~~~ 217 (380)
+|+++|+|+|+|.|+ .+.+.+|+|++|||+++||.+||++++|+.++| |+|+||++|++++++++... ...
T Consensus 122 qGLs~AvGmAla~r~l~a~~~~~~~~~rvyvllGDGEl~EG~vwEA~~~Ag~~kL~NLivIvD~N~~qidG~t~~v~~~~ 201 (386)
T cd02017 122 LGPIQAIYQARFNRYLEDRGLKDTSDQKVWAFLGDGEMDEPESLGAIGLAAREKLDNLIFVVNCNLQRLDGPVRGNGKII 201 (386)
T ss_pred HHHHHHHHHHHHHHHHHhhhccCCCCCeEEEEEcccccccHHHHHHHHHHHHhCCCCEEEEEECCCCccCCcccccccCc
Confidence 999999999999998 556789999999999999999999999999999 89999999999999998875 356
Q ss_pred cCHHHHHhhcCceEEEEe--------------------------------------------------------------
Q 016903 218 DGAVVKGRAYGVRSIRVD-------------------------------------------------------------- 235 (380)
Q Consensus 218 ~~~~~~a~a~G~~~~~Vd-------------------------------------------------------------- 235 (380)
.++.+++++|||.++.||
T Consensus 202 e~l~~kf~AfGW~vi~V~~g~~~~~~f~~~gg~~l~~~~~~~~~~~~~~l~~~~~~~~r~~l~~~~~~~~~~~~~~~d~~ 281 (386)
T cd02017 202 QELEGIFRGAGWNVIKVIWGSKWDELLAKDGGGALRQRMEETVDGDYQTLKAKDGAYVREHFFGKYPELKALVTDLSDED 281 (386)
T ss_pred hhHHHHHHhcCCEEEEEecCCcchhhhccCcchHHHHHHHhcccHHHHHHhhcchHHHHHHhccccHHHHHHhhcccHHh
Confidence 799999999999999998
Q ss_pred -------CCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCCCCC
Q 016903 236 -------GNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHT 273 (380)
Q Consensus 236 -------G~D~~av~~a~~~a~~~ar~~~gP~lIe~~t~R~~gHs 273 (380)
|||+.++++|+.++.+. .++|++|.++|...+|.+
T Consensus 282 ~~~~~~gGhD~~~i~~A~~~a~~~---~~kPt~Iia~TikG~G~~ 323 (386)
T cd02017 282 LWALNRGGHDPRKVYAAYKKAVEH---KGKPTVILAKTIKGYGLG 323 (386)
T ss_pred hhhhccCCCCHHHHHHHHHHHHhC---CCCCeEEEEeCeecCCCC
Confidence 99999999999988753 468999999999999976
No 29
>PLN02790 transketolase
Probab=99.95 E-value=3.1e-26 Score=242.81 Aligned_cols=183 Identities=22% Similarity=0.214 Sum_probs=151.9
Q ss_pred CCcEEEcc--ccc---HHHHHHcCC--CHHHHHHHhhcCCCCCCCCCCCccccCC-CCCCccccCcccccchHHHHHHHH
Q 016903 86 NDDFVVPQ--YRE---PGVLLWRGF--SMQEFANQCFGNKADYGKGRQMPIHYGS-NKHNYFTVSSTIATQLPHAVGAAY 157 (380)
Q Consensus 86 ~~D~v~~~--yR~---~~~~l~~G~--~~~~~~~e~~g~~~~~~~G~~~~~H~~~-~~~~~~~~~g~lG~~lp~A~G~A~ 157 (380)
+.|.++.+ |.. .+++...|+ -..+-+..++. .|+..++|+.. ..+++...+|++|+++++|+|+|+
T Consensus 46 ~rDrfvls~GH~~~~lYa~l~~~G~~~~~~~~l~~~r~------~~s~~~ghp~~~~~pgi~~~tG~lG~gl~~A~G~A~ 119 (654)
T PLN02790 46 NRDRFVLSAGHGCMLQYALLHLAGYDSVQMEDLKQFRQ------WGSRTPGHPENFETPGIEVTTGPLGQGIANAVGLAL 119 (654)
T ss_pred CCCEEEEeCcchHHHHHHHHHHcCCCCCCHHHHHHhcc------CCCCCCCCCCCCCCCCccccCCchhchHHHHHHHHH
Confidence 35777664 655 456667887 23444666654 36667789875 457889999999999999999999
Q ss_pred Hhhh-----cCC-----CCeeEEEeCccccCcchHHHHHHHHHHcCCC-EEEEEEcCCcccccccccccCCcCHHHHHhh
Q 016903 158 ALKM-----DRK-----DACAVTYFGDGGTSEGDFHAALNFSAVTEAP-VIFICRNNGWAISTPISDQFRSDGAVVKGRA 226 (380)
Q Consensus 158 A~k~-----~~~-----~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lp-vi~vv~NN~~~~~~~~~~~~~~~~~~~~a~a 226 (380)
|.|+ +++ +.+|+|++|||++++|.+|||+|+|+.++|| +|+||+||++++++++.... ..++.+++++
T Consensus 120 A~k~~~~~~~~~~~~~~~~~v~~~~GDG~l~eG~~~EAl~~A~~~~L~nli~i~d~N~~~i~~~~~~~~-~~~~~~~f~a 198 (654)
T PLN02790 120 AEKHLAARFNKPDHKIVDHYTYCILGDGCQMEGISNEAASLAGHWGLGKLIVLYDDNHISIDGDTEIAF-TEDVDKRYEA 198 (654)
T ss_pred HHHHHHHHhCCCcccccCCEEEEEECcCcccchHHHHHHHHHHHhCCCCEEEEEecCCccccCCccccc-chhHHHHHHH
Confidence 9995 342 6899999999999999999999999999995 99999999999999988654 5688999999
Q ss_pred cCceEEEEeC--CCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCCCCCCCCCC
Q 016903 227 YGVRSIRVDG--NDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDDS 278 (380)
Q Consensus 227 ~G~~~~~VdG--~D~~av~~a~~~a~~~ar~~~gP~lIe~~t~R~~gHs~~Dd~ 278 (380)
|||+++.||| ||++++++++++|.+. .++|++|+++|++.+|.+...++
T Consensus 199 ~G~~~~~vdgg~hd~~~l~~a~~~a~~~---~~~P~lI~~~T~kG~G~~~~e~~ 249 (654)
T PLN02790 199 LGWHTIWVKNGNTDYDEIRAAIKEAKAV---TDKPTLIKVTTTIGYGSPNKANS 249 (654)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHHHhc---CCCeEEEEEEEeecCCCccccCC
Confidence 9999999988 8999999999888652 57999999999999998755443
No 30
>PRK05444 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=99.95 E-value=2.9e-26 Score=240.83 Aligned_cols=240 Identities=19% Similarity=0.197 Sum_probs=176.7
Q ss_pred CeeEEeCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccchhhHHHHHHHhcCC-CCcEEE
Q 016903 13 PCYRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRISFYLTTSGEEAINIASAAAIK-NDDFVV 91 (380)
Q Consensus 13 ~~~~~~~~~g~~~~~~~~~~~~~e~l~~~y~~M~~~R~~e~~~~~~~~~g~i~~~~~~~G~Ea~~~~~~~~l~-~~D~v~ 91 (380)
++|.+|+ ++-+|.|.++++.++|.++-.. +|.+.++.. .. ..|.++--.++. |... .+-..++ +.|.++
T Consensus 2 ~~~~~~~---~~~~~~~~~~~~~~~l~~~a~~-iR~~~~~~~--~~-~~gH~g~~ls~~--~i~~-~L~~~~~~~rDr~i 71 (580)
T PRK05444 2 PKYPLLD---TINSPADLKKLSEEELPQLADE-IREFLIDVV--SK-TGGHLGSNLGVV--ELTV-ALHYVFDTPKDRII 71 (580)
T ss_pred CCCchhh---ccCCHHHHhcCCHHHHHHHHHH-HHHHHHHHH--Hh-cCCCcCCCccHH--HHHH-HHHHhcCCCCccEE
Confidence 4455565 3334556788888887665333 344444433 22 356554332222 3332 3333454 457666
Q ss_pred cc--cccHHHHHHcCCCHHHHHHHhhcCCCCCCCCCCCccccCCCC-CCccccCcccccchHHHHHHHHHhhhc-CCCCe
Q 016903 92 PQ--YREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNK-HNYFTVSSTIATQLPHAVGAAYALKMD-RKDAC 167 (380)
Q Consensus 92 ~~--yR~~~~~l~~G~~~~~~~~e~~g~~~~~~~G~~~~~H~~~~~-~~~~~~~g~lG~~lp~A~G~A~A~k~~-~~~~~ 167 (380)
.+ |...+++...|. .+.+..++. .|+ +++|+.... +++...+|++|+++|+|+|+|+|.|++ +++++
T Consensus 72 ls~GH~~y~~~~~~g~--~~~l~~~~~------~~s-~~g~p~~~~~~~~~~~~G~lG~gl~~AvG~A~a~~~~~~~~~~ 142 (580)
T PRK05444 72 WDVGHQAYPHKILTGR--RDRFDTLRQ------KGG-LSGFPKRSESEYDTFGAGHSSTSISAALGMAKARDLKGGEDRK 142 (580)
T ss_pred EeccHHHHHHHHHhCc--HHHhcCccc------CCC-CCCCCCCCCCCCeeECCChHHHHHHHHHHHHHHHHhhCCCCCe
Confidence 53 666666677886 233444443 244 678987643 678888999999999999999999998 58899
Q ss_pred eEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcccccccccc---cCCcCHHHHHhhcCceEE-EEeCCCHHHHH
Q 016903 168 AVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQ---FRSDGAVVKGRAYGVRSI-RVDGNDALAIY 243 (380)
Q Consensus 168 vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~~~~~~~~~---~~~~~~~~~a~a~G~~~~-~VdG~D~~av~ 243 (380)
|+|++|||+++||++||++++|+++++|+|+|++||+|++++++... ....++.+++++|||+++ .|||||+++++
T Consensus 143 v~~i~GDG~l~eG~~~Eal~~A~~~~~nli~IvdnN~~~i~~~~~~~~~~~~~~~~~~~~~a~G~~~~~~vdG~d~~~l~ 222 (580)
T PRK05444 143 VVAVIGDGALTGGMAFEALNNAGDLKSDLIVILNDNEMSISPNVGALSNYLARLRSSTLFEELGFNYIGPIDGHDLDALI 222 (580)
T ss_pred EEEEEcccccccCHHHHHHHHHHhhCCCEEEEEECCCCcCCCcchhhhhhhccccHHHHHHHcCCCeeeeeCCCCHHHHH
Confidence 99999999999999999999999999999999999999998877543 233567789999999999 59999999999
Q ss_pred HHHHHHHHHhhccCCcEEEEEEeecCCCCCCC
Q 016903 244 SAVHAAREMAIGEGRPILIEALTYRVGHHTTS 275 (380)
Q Consensus 244 ~a~~~a~~~ar~~~gP~lIe~~t~R~~gHs~~ 275 (380)
++++++.+ .++|++|+++|.|.+|.+..
T Consensus 223 ~al~~a~~----~~~P~lI~~~T~kg~G~~~~ 250 (580)
T PRK05444 223 ETLKNAKD----LKGPVLLHVVTKKGKGYAPA 250 (580)
T ss_pred HHHHHHHh----CCCCEEEEEEecCCcCCChh
Confidence 99887664 47999999999999997654
No 31
>TIGR00204 dxs 1-deoxy-D-xylulose-5-phosphate synthase. DXP synthase is a thiamine diphosphate-dependent enzyme related to transketolase and the pyruvate dehydrogenase E1-beta subunit. By an acyloin condensation of pyruvate with glyceraldehyde 3-phosphate, it produces 1-deoxy-D-xylulose 5-phosphate, a precursor of thiamine diphosphate (TPP), pyridoxal phosphate, and the isoprenoid building block isopentenyl diphosphate (IPP).
Probab=99.94 E-value=1.3e-25 Score=236.79 Aligned_cols=229 Identities=17% Similarity=0.182 Sum_probs=171.3
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccchhhHHHHHHHhcCC-CCcEEEc--ccccHHHHHHc
Q 016903 27 DSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRISFYLTTSGEEAINIASAAAIK-NDDFVVP--QYREPGVLLWR 103 (380)
Q Consensus 27 ~~~~~~~~~e~l~~~y~~M~~~R~~e~~~~~~~~~g~i~~~~~~~G~Ea~~~~~~~~l~-~~D~v~~--~yR~~~~~l~~ 103 (380)
|.|.++++.++|.++-.. +|.+.++.. . ...|.++ +++|---+.+++-..++ +.|.++. .|...++++..
T Consensus 7 p~dl~~l~~~~l~~la~~-iR~~~i~~~--~-~~~GH~g---~~ls~vel~~aL~~~~~~~rDr~i~s~GH~~Y~~~~~~ 79 (617)
T TIGR00204 7 PQELRLLSIDELEKLCDE-LRRYLLESV--S-ASGGHLA---SGLGTVELTVALHYVFNTPKDQFIWDVGHQAYPHKLLT 79 (617)
T ss_pred HHHHhhCCHHHHHHHHHH-HHHHHHHHH--h-ccCCCcC---cchhHHHHHHHHHhhCCCCCCcEEEecchHHHHHHHHh
Confidence 445678888887665444 344444432 2 2344443 34443333445555666 5677766 47777888889
Q ss_pred CCCHHHHHHHhhcCCCCCCCCCCCccccCCCCCCcc-ccCcccccchHHHHHHHHHhhhcCCCCeeEEEeCccccCcchH
Q 016903 104 GFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYF-TVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDF 182 (380)
Q Consensus 104 G~~~~~~~~e~~g~~~~~~~G~~~~~H~~~~~~~~~-~~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~ 182 (380)
|+ .+-|..++. .|+ +++|+...+++.. ..+|++|+++++|+|+|+|.|+++.+.+|+|++|||++++|.+
T Consensus 80 G~--~~~l~~~r~------~g~-l~g~p~~~e~~~d~~~~G~~g~~ls~a~G~A~a~~~~~~~~~v~~~~GDG~~~eG~~ 150 (617)
T TIGR00204 80 GR--REKFSTLRQ------KKG-LHGFPKRSESEYDVFSAGHSSTSISAGLGIAVAAEKKGADRKTVCVIGDGAITAGMA 150 (617)
T ss_pred Cc--HHHhcchhh------cCC-cCCCCcCCCCCCCccCCCchHhHHHHHHHHHHHHHhhCCCCEEEEEECCcccccccH
Confidence 97 344556654 244 8889876555554 4799999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCEEEEEEcCCcccccccccccC------------------------Cc---C-HHHH-----------
Q 016903 183 HAALNFSAVTEAPVIFICRNNGWAISTPISDQFR------------------------SD---G-AVVK----------- 223 (380)
Q Consensus 183 ~Eal~~A~~~~Lpvi~vv~NN~~~~~~~~~~~~~------------------------~~---~-~~~~----------- 223 (380)
|||+|+|+.++||+|+||+||++++++++..... .+ + +.++
T Consensus 151 ~Ea~~~a~~~~l~~i~ii~~N~~~i~~~~~~~~~~l~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~ 230 (617)
T TIGR00204 151 FEALNHAGDLKTDMIVILNDNEMSISENVGALSNHLAQLRSGSLYQSLRDGLKKIFSKLPPIKNYLAKRTEESMKGLVVP 230 (617)
T ss_pred HHHHHHHHhcCCCEEEEEECCCcccCCCchHHHHHHHHhhccchHHHHHHHHHHHHhcCcchhHHHHHHHHHhhhhccCc
Confidence 9999999999999999999999999987753210 01 1 3344
Q ss_pred ---HhhcCceEE-EEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCCCCCCC
Q 016903 224 ---GRAYGVRSI-RVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTS 275 (380)
Q Consensus 224 ---a~a~G~~~~-~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t~R~~gHs~~ 275 (380)
+++|||.++ .|||||+.++.++++.+.+ .++|++|+++|.|..|-+..
T Consensus 231 ~~~f~~~G~~~~~~vDGhd~~~l~~al~~ak~----~~~P~~i~~~T~KGkG~~~~ 282 (617)
T TIGR00204 231 GTFFEELGFNYIGPVDGHDLLELIETLKNAKK----LKGPVFLHIQTKKGKGYKPA 282 (617)
T ss_pred cchHHHcCCcEEcccCCCCHHHHHHHHHHHhc----CCCCEEEEEEecCCCCCchh
Confidence 899999999 8999999999999986653 57899999999999885543
No 32
>TIGR00759 aceE pyruvate dehydrogenase E1 component, homodimeric type. WARNING: This family is classified as subfamily rather than equivalog because it includes a counterexample from Pseudomonas putida, MdeB, that is active as an E1 component of an alpha-ketoglutarate dehydrogenase complex rather than a pyruvate dehydrogase complex. The second pyruvate dehydrogenase complex E1 protein from Alcaligenes eutrophus, PdhE, complements an aceE mutant of E. coli but is not part of a pyruvate dehydrogenase complex operon, is more similar to the Pseudomonas putida MdeB than to E. coli AceE, and may have also have a different primary specificity.
Probab=99.93 E-value=3.9e-24 Score=226.54 Aligned_cols=230 Identities=19% Similarity=0.224 Sum_probs=169.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh----cCCcccccccchhhHHHHHHHhcCCC------CcEEEcc-cccHH---HH
Q 016903 35 EGVAIKMYNDMVTLQTMDTIFYEAQR----QGRISFYLTTSGEEAINIASAAAIKN------DDFVVPQ-YREPG---VL 100 (380)
Q Consensus 35 ~e~l~~~y~~M~~~R~~e~~~~~~~~----~g~i~~~~~~~G~Ea~~~~~~~~l~~------~D~v~~~-yR~~~---~~ 100 (380)
+.++.+..+..+|-..++........ .|.++...++. +...+.....|+. .|.|++. |-..+ .+
T Consensus 71 d~~~e~~i~~~iR~~ai~MV~~A~~~~~~vgGHigsslS~a--dIl~vLy~~~lr~~~~~~~rD~VlSKGHasp~lYA~L 148 (885)
T TIGR00759 71 DLELERRIRSIIRWNAIAMVLRANKKDLGLGGHISTYASAA--TLYEVGFNHFFRGHSEGGGGDLVFFQGHAAPGIYARA 148 (885)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCcCCcHHHH--HHHHHHHHHhcCCCCCCCCCCEEEECCcHHHHHHHHH
Confidence 34455555555554444433221101 23333322222 3344444445663 6876662 33322 34
Q ss_pred HHcCCCHHHHHHHhhcCCCCCCCCCCCccccCCCC-CC-ccccCcccccchHHHHHHHHHhhh-------cCCCCeeEEE
Q 016903 101 LWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNK-HN-YFTVSSTIATQLPHAVGAAYALKM-------DRKDACAVTY 171 (380)
Q Consensus 101 l~~G~~~~~~~~e~~g~~~~~~~G~~~~~H~~~~~-~~-~~~~~g~lG~~lp~A~G~A~A~k~-------~~~~~~vv~~ 171 (380)
...|+..++-+..|+... .|+++++|+.... ++ +..++|+||.|+++|+|+|++.|+ +..+++|+|+
T Consensus 149 ~l~G~ls~e~L~~FRq~~----~g~gL~shPhp~~~p~~ve~sTGSLG~Gls~AvG~Ala~Kyl~~rg~~~~~~~rVyvl 224 (885)
T TIGR00759 149 FLEGRLTEEQLDNFRQEV----QGDGLSSYPHPWLMPDFWQFPTVSMGLGPINAIYQARFMKYLENRGLKDTGDQKVWAF 224 (885)
T ss_pred HHcCCCCHHHHHHhcCCC----CCCCCCCCCCcCcCCCCEEeCCCCccHHHHHHHHHHHHHHHHHhhccCCCCCceEEEE
Confidence 458977777777776421 2667888876432 44 677899999999999999999996 5678899999
Q ss_pred eCccccCcchHHHHHHHHHHcCC-CEEEEEEcCCcccccccccccC-CcCHHHHHhhcCceEEEE---------------
Q 016903 172 FGDGGTSEGDFHAALNFSAVTEA-PVIFICRNNGWAISTPISDQFR-SDGAVVKGRAYGVRSIRV--------------- 234 (380)
Q Consensus 172 ~GDG~~~eG~~~Eal~~A~~~~L-pvi~vv~NN~~~~~~~~~~~~~-~~~~~~~a~a~G~~~~~V--------------- 234 (380)
+|||+++||.+|||+.+|++++| |+|+||++|..++++++..... ..++.++++++||++++|
T Consensus 225 lGDGEldEG~swEA~~~Aa~~kLdNLi~IVD~N~~qlDG~v~~~~~i~e~le~~F~a~GW~Vi~V~wg~~wd~lf~~d~~ 304 (885)
T TIGR00759 225 LGDGEMDEPESKGAITFAAREKLDNLTFVINCNLQRLDGPVRGNGKIIQELESLFRGAGWNVIKVLWGSEWDALLARDTS 304 (885)
T ss_pred EcchhhccHHHHHHHHHHHHhCCCCEEEEEeCCCCccCCccccccccchhHHHHHHhcCCEEEEEecCccchHhhcCCCc
Confidence 99999999999999999999999 8999999999999999987544 568999999999999999
Q ss_pred ------------------------------------------------------eCCCHHHHHHHHHHHHHHhhccCCcE
Q 016903 235 ------------------------------------------------------DGNDALAIYSAVHAAREMAIGEGRPI 260 (380)
Q Consensus 235 ------------------------------------------------------dG~D~~av~~a~~~a~~~ar~~~gP~ 260 (380)
+|||+.+|++|++.|.+. .++|+
T Consensus 305 g~L~~~m~~~~dg~yq~~~~~~Ga~~R~~ffg~~~~l~~lv~~~sD~~i~~l~rgGHD~~~I~~A~~~A~~~---~grPT 381 (885)
T TIGR00759 305 GVLVKLMNETVDGDYQTYKAKDGAYVREHFFNRTPELKALVADMSDADIWALNRGGHDPRKVYAAYAAAQEH---KGQPT 381 (885)
T ss_pred cHHHHHHHhcccHHHHHHhhcchHHHHHHhccccHHHHHHhhccchhhhhhccCCCCCHHHHHHHHHHHHhC---CCCCE
Confidence 599999999999988764 45899
Q ss_pred EEEEEeecCCCCC
Q 016903 261 LIEALTYRVGHHT 273 (380)
Q Consensus 261 lIe~~t~R~~gHs 273 (380)
+|.++|.+.+|.+
T Consensus 382 vIlA~TvKG~G~~ 394 (885)
T TIGR00759 382 VILAKTIKGYGMG 394 (885)
T ss_pred EEEEeeeecCCCC
Confidence 9999999999976
No 33
>PRK12571 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=99.92 E-value=4.2e-24 Score=226.02 Aligned_cols=242 Identities=19% Similarity=0.212 Sum_probs=172.7
Q ss_pred CeeEEeCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccchhhHHHHHHHhcCC-CCcEEE
Q 016903 13 PCYRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRISFYLTTSGEEAINIASAAAIK-NDDFVV 91 (380)
Q Consensus 13 ~~~~~~~~~g~~~~~~~~~~~~~e~l~~~y~~M~~~R~~e~~~~~~~~~g~i~~~~~~~G~Ea~~~~~~~~l~-~~D~v~ 91 (380)
|.+.+|+ +.-.|.|.++++.++|.++-.. +|.+.++... .. .|.++ +++|---+.+++...++ +.|.++
T Consensus 4 ~~~~~l~---~i~~p~dl~~l~~~~l~~~a~~-iR~~ii~~~~--~~-~GH~g---~~ls~vel~~aL~~~~~~prDr~i 73 (641)
T PRK12571 4 PKTPLLD---RIKGPADLRALSDAELEQLADE-LRAEVISAVS--ET-GGHLG---SSLGVVELTVALHAVFNTPKDKLV 73 (641)
T ss_pred CCCChhh---hcCCHHHHHhCCHHHHHHHHHH-HHHHHHHHHH--Hh-CCCcC---CCchHHHHHHHHHHhcCCCCCcEE
Confidence 3344565 3334556788888887766443 3444444332 22 35543 33333323344444554 568776
Q ss_pred c--ccccHHHHHHcCCCHHHHHHHhhcCCCCCCCCCCCccccCCCC-CCccccCcccccchHHHHHHHHHhhhcCCCCee
Q 016903 92 P--QYREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNK-HNYFTVSSTIATQLPHAVGAAYALKMDRKDACA 168 (380)
Q Consensus 92 ~--~yR~~~~~l~~G~~~~~~~~e~~g~~~~~~~G~~~~~H~~~~~-~~~~~~~g~lG~~lp~A~G~A~A~k~~~~~~~v 168 (380)
. .|...++++..|. .+-|..++.. |+ +++|+...+ ++.....++-++++++|+|+|+|.++.+++++|
T Consensus 74 ~s~GH~~Y~~~~l~g~--~~~l~~~r~~------~~-l~g~p~~~e~~~~~~~~g~~~gslg~a~G~A~a~~~~~~~~~v 144 (641)
T PRK12571 74 WDVGHQCYPHKILTGR--RDRFRTLRQK------GG-LSGFTKRSESEYDPFGAAHSSTSISAALGFAKARALGQPDGDV 144 (641)
T ss_pred EECchHHHHHHHHhCC--HHHHhhhhhC------CC-cCCCCCCCcCCCCCcccCCCcChHHHHHHHHHHHHHhCCCCeE
Confidence 6 4777778888886 4556666642 43 677776543 232233455577789999999999999999999
Q ss_pred EEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcccccccc-------cccCCcCH---------------------
Q 016903 169 VTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPIS-------DQFRSDGA--------------------- 220 (380)
Q Consensus 169 v~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~~~~~~~-------~~~~~~~~--------------------- 220 (380)
+|++|||++++|.+||++++|+++++|+++|++||++++++++. +......+
T Consensus 145 ~~v~GDG~~~eG~~~Eal~~a~~~~~~li~I~dnN~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (641)
T PRK12571 145 VAVIGDGSLTAGMAYEALNNAGAADRRLIVILNDNEMSIAPPVGALAAYLSTLRSSDPFARLRAIAKGVEERLPGPLRDG 224 (641)
T ss_pred EEEEeCchhhcchHHHHHHHHHHhCCCEEEEEECCCeeecCCccHHHHHHHHHhcCcchHHHHHHHHHHHhhcchhHHHH
Confidence 99999999999999999999999999999999999999998874 21112111
Q ss_pred --------------HHHHhhcCceEE-EEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCCCCCCCC
Q 016903 221 --------------VVKGRAYGVRSI-RVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSD 276 (380)
Q Consensus 221 --------------~~~a~a~G~~~~-~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t~R~~gHs~~D 276 (380)
.+++++|||.++ .|||||+.++.++++++.+. .++|++|.++|.+.+|.+...
T Consensus 225 ~~~~~~~~~~~~~~~~~f~a~G~~~~~~vdGhd~~~l~~al~~ak~~---~~~P~~I~~~T~kGkG~~~~e 292 (641)
T PRK12571 225 ARRARELVTGMIGGGTLFEELGFTYVGPIDGHDMEALLSVLRAARAR---ADGPVLVHVVTEKGRGYAPAE 292 (641)
T ss_pred HHHHHHhhhhccchhhHHHHcCCEEECccCCCCHHHHHHHHHHHHhC---CCCCEEEEEEecCccCcchhh
Confidence 478999999999 79999999999999887642 378999999999999987543
No 34
>TIGR03186 AKGDH_not_PDH alpha-ketoglutarate dehydrogenase. Several bacterial species have a paralog to homodimeric form of the pyruvate dehydrogenase E1 component (see model TIGR00759), often encoded next to L-methionine gamma-lyase gene (mdeA). The member from a strain of Pseudomonas putida was shown to act on alpha-ketobutyrate, which is produced by MdeA.This model serves as an exception model to TIGR00759, as other proteins hitting TIGR00759 should be identified as the pyruvate dehydrogenase E1 component.
Probab=99.92 E-value=2.7e-23 Score=222.46 Aligned_cols=231 Identities=18% Similarity=0.193 Sum_probs=168.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh----cCCcccccccchhhHHHHHHHhcCCC------CcEEEcc-cccHH---HH
Q 016903 35 EGVAIKMYNDMVTLQTMDTIFYEAQR----QGRISFYLTTSGEEAINIASAAAIKN------DDFVVPQ-YREPG---VL 100 (380)
Q Consensus 35 ~e~l~~~y~~M~~~R~~e~~~~~~~~----~g~i~~~~~~~G~Ea~~~~~~~~l~~------~D~v~~~-yR~~~---~~ 100 (380)
+.++.+-....+|...++........ .|.++...++. +...+.....|+. +|+|++. |-..+ .+
T Consensus 71 d~~~~~~~a~~iR~~a~~mv~~A~~~~~~~gGH~gs~lS~a--~i~~vLy~~~lr~~~~~~~rD~VlskGHasp~lYA~l 148 (889)
T TIGR03186 71 DLQLEERLAAILRWNALAMVVRANRAYGELGGHIASYASAA--DLFEVGFNHFFRAAGDASGGDLVYFQPHSAPGVYARA 148 (889)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCcCcHHHH--HHHHHHHHHhCCCCCCCCCCCEEEECCchHHHHHHHH
Confidence 44455555555555555443322211 24443332222 4444455456663 6876663 44433 33
Q ss_pred HHcCCCHHHHHHHhhcCCCCCCCCCCCccccCCC-CC-CccccCcccccchHHHHHHHHHhhhc-------CCCCeeEEE
Q 016903 101 LWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSN-KH-NYFTVSSTIATQLPHAVGAAYALKMD-------RKDACAVTY 171 (380)
Q Consensus 101 l~~G~~~~~~~~e~~g~~~~~~~G~~~~~H~~~~-~~-~~~~~~g~lG~~lp~A~G~A~A~k~~-------~~~~~vv~~ 171 (380)
...|+..++-+..|+... .|++++.|+... .+ ++..++|+||+|+++|+|+|++.|+. ..+.+|+|+
T Consensus 149 ~l~G~l~~e~L~~fRq~~----~~~gl~~~phP~~~p~~ve~sTGSLGqGl~~AvG~Ala~kyl~~r~~~~~~~~rVy~l 224 (889)
T TIGR03186 149 FLEGFLSDAQLAHYRQEI----AGPGLCSYPHPWLMPDFWQFPTGSMGIGPINAIYQARFMRYLQNRGLARTEGRKVWGF 224 (889)
T ss_pred HHcCCCCHHHHHHhcCCC----CCCCCCCCCCcccCCCCeEcCCCCchHHHHHHHHHHHHHHHHhhccccCCCCceEEEE
Confidence 457976666677776431 245566654332 24 46778999999999999999998843 236899999
Q ss_pred eCccccCcchHHHHHHHHHHcCC-CEEEEEEcCCcccccccccccC-CcCHHHHHhhcCceEEEE---------------
Q 016903 172 FGDGGTSEGDFHAALNFSAVTEA-PVIFICRNNGWAISTPISDQFR-SDGAVVKGRAYGVRSIRV--------------- 234 (380)
Q Consensus 172 ~GDG~~~eG~~~Eal~~A~~~~L-pvi~vv~NN~~~~~~~~~~~~~-~~~~~~~a~a~G~~~~~V--------------- 234 (380)
+|||+++||.+|||+.+|++++| |+|+||++|..++++++..... ..++.+++++|||++++|
T Consensus 225 lGDGEl~EG~~wEA~~~Aa~~kLdNLi~IvD~N~~qlDG~t~~~~~~~e~l~~kf~a~GW~vi~v~wG~~wd~l~~~d~~ 304 (889)
T TIGR03186 225 FGDGEMDEPESIGALSLAARERLDNLVFVINCNLQRLDGPVRGNGRIIDELESQFAGAGWNVIKVLWGSDWDALFARDAT 304 (889)
T ss_pred EcchhhccHHHHHHHHHHHHhCCCCEEEEEeCCCCccCCccccccccchHHHHHHHhCCCEEEEEeecCchHHhhccccc
Confidence 99999999999999999999999 8999999999999999887443 578999999999999999
Q ss_pred ------------------------------------------------------eCCCHHHHHHHHHHHHHHhhccCCcE
Q 016903 235 ------------------------------------------------------DGNDALAIYSAVHAAREMAIGEGRPI 260 (380)
Q Consensus 235 ------------------------------------------------------dG~D~~av~~a~~~a~~~ar~~~gP~ 260 (380)
+|||+.+|++|+++|.+. .++|+
T Consensus 305 ~~L~~~~~~~~dg~yq~~~~~~ga~~R~~ff~~~~~~~~lv~~~sD~~i~~l~rgGHD~~~i~~A~~~A~~~---~~~PT 381 (889)
T TIGR03186 305 GALARAFAHTVDGQFQTFSANDGAYNRARFFGQDPALAALVAHLSDEDIDRLRRGGHDARKLYAAYDRAVRH---EGRPT 381 (889)
T ss_pred hHHHHHHHhcccHHHHHHhhcchHHHHHHhcCccHHHHHHhhcccHHhhhhhcCCCCCHHHHHHHHHHHHhC---CCCCE
Confidence 699999999999999864 46899
Q ss_pred EEEEEeecCCCCCC
Q 016903 261 LIEALTYRVGHHTT 274 (380)
Q Consensus 261 lIe~~t~R~~gHs~ 274 (380)
+|.++|...+|-+.
T Consensus 382 vIla~TvkG~G~~~ 395 (889)
T TIGR03186 382 VILAKTMKGFGMGA 395 (889)
T ss_pred EEEEEeeecCCCCc
Confidence 99999999998644
No 35
>PLN02234 1-deoxy-D-xylulose-5-phosphate synthase
Probab=99.92 E-value=1.1e-23 Score=220.56 Aligned_cols=198 Identities=14% Similarity=0.128 Sum_probs=153.8
Q ss_pred ccchhhHHHHHHHhcCC-CCcEEEcc--cccHHHHHHcCCCHHHHHHHhhcCCCCCCCCCCCccccCCCC-CCccccCcc
Q 016903 69 TTSGEEAINIASAAAIK-NDDFVVPQ--YREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNK-HNYFTVSST 144 (380)
Q Consensus 69 ~~~G~Ea~~~~~~~~l~-~~D~v~~~--yR~~~~~l~~G~~~~~~~~e~~g~~~~~~~G~~~~~H~~~~~-~~~~~~~g~ 144 (380)
++.|---+.+++-..|+ |.|.++.. |-..++.+..|.. +-|..++. .|+ +++|+...+ ++....+|+
T Consensus 108 ssLs~vEl~~aL~~vf~~p~DriI~s~GHqaya~~~ltgr~--~~l~t~r~------~gg-l~G~p~~~es~~d~~~tGs 178 (641)
T PLN02234 108 SNLGVVELTVALHYIFNTPHDKILWDVGHQSYPHKILTGRR--GKMKTIRQ------TNG-LSGYTKRRESEHDSFGTGH 178 (641)
T ss_pred ccchHHHHHHHHHHhcCCCCCeEEEecchhHHHHHHHHhhh--hhhccccc------CCC-cCCCCCCCCCCCcEECCCc
Confidence 44444434455555565 77888774 7777777777762 23444443 243 788887543 578888999
Q ss_pred cccchHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcc------cccccccccCC-
Q 016903 145 IATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWA------ISTPISDQFRS- 217 (380)
Q Consensus 145 lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~------~~~~~~~~~~~- 217 (380)
+|+++++|+|+|+|.++++.+..|||++|||++++|++|||||.|+..+-|+|+|+++|+.+ .++++......
T Consensus 179 lg~glS~a~GmA~a~~l~g~~~~v~~viGDGel~eG~~wEAl~~a~~~~~nlivIlddN~~~~~~~~q~~g~~~~v~~l~ 258 (641)
T PLN02234 179 SSTTLSAGLGMAVGRDLKGMNNSVVSVIGDGAMTAGQAYEAMNNAGYLHSNMIVILNDNKQVSLPTANLDGPTQPVGALS 258 (641)
T ss_pred hHHHHHHHHHHHHHHHhCCCCCeEEEEEccchhhhHHHHHHHHHHhhhCCCEEEEEECCCCCcccccccCCCCCCcccHH
Confidence 99999999999999999999999999999999999999999999997666999999999984 44444322111
Q ss_pred --------------cCHHHHHhhcCceEE-EEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCCCCCCCCC
Q 016903 218 --------------DGAVVKGRAYGVRSI-RVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDD 277 (380)
Q Consensus 218 --------------~~~~~~a~a~G~~~~-~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t~R~~gHs~~Dd 277 (380)
.+..+++++|||.++ .|||||++++.++++++... ..++|++|.++|.+..|.+.++.
T Consensus 259 ~~l~~l~~~~~~~~~~~~~~fe~fG~~~~g~vDGHd~~~l~~al~~~k~~--~~~~P~vI~~~T~KGkGv~~~E~ 331 (641)
T PLN02234 259 CALSRLQSNCGMIRETSSTLFEELGFHYVGPVDGHNIDDLVSILETLKST--KTIGPVLIHVVTEKGRGYPYAER 331 (641)
T ss_pred HHHHHhhcccccccCCHHHHHHHcCCEEEeeECCCCHHHHHHHHHHHHhc--CCCCCEEEEEEEecCCCcchhhc
Confidence 256789999999999 99999999999999887542 23589999999999999887754
No 36
>cd02011 TPP_PK Thiamine pyrophosphate (TPP) family, Phosphoketolase (PK) subfamily, TPP-binding module; PK catalyzes the conversion of D-xylulose 5-phosphate and phosphate to acetyl phosphate, D-glyceraldehyde-3-phosphate and H2O. This enzyme requires divalent magnesium ions and TPP for activity.
Probab=99.92 E-value=1.5e-24 Score=200.02 Aligned_cols=167 Identities=22% Similarity=0.315 Sum_probs=144.0
Q ss_pred chhhHHHHHHHhcCCC-CcEEEcccccHHHHHHcCCCHHHHHHHhhcCCCCCCCCCCCccccCCCCCCccccCcccccch
Q 016903 71 SGEEAINIASAAAIKN-DDFVVPQYREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQL 149 (380)
Q Consensus 71 ~G~Ea~~~~~~~~l~~-~D~v~~~yR~~~~~l~~G~~~~~~~~e~~g~~~~~~~G~~~~~H~~~~~~~~~~~~g~lG~~l 149 (380)
.||++.++.++..|.. .|.+++.||.+. .| ++++|.+|. . .|+ +++|+....+++...+|+||+++
T Consensus 2 ~GHg~~~l~a~l~l~G~~~~~~p~~~~~~----~g--l~~lf~qfs-~-----~gg-~psH~~~~tpGi~~~~G~LG~gL 68 (227)
T cd02011 2 PGHGGPAVLANLYLEGSYSEFYPEISQDE----EG--MRKLFKQFS-F-----PGG-IPSHAAPETPGSIHEGGELGYSL 68 (227)
T ss_pred CChHHHHHHHHHHhcCCCccccccccccH----HH--HHHHHHhcC-C-----CCC-CCCCCcccCCCeeecccchhhHH
Confidence 5899999988888876 599999999775 12 256777762 1 233 89999888899999999999999
Q ss_pred HHHHHHHHHhhhcCCCCeeEEEeCccccCcchH---HHHHHHHHHcCC-CEEEEEEcCCcccccccccc-cCCcCHHHHH
Q 016903 150 PHAVGAAYALKMDRKDACAVTYFGDGGTSEGDF---HAALNFSAVTEA-PVIFICRNNGWAISTPISDQ-FRSDGAVVKG 224 (380)
Q Consensus 150 p~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~---~Eal~~A~~~~L-pvi~vv~NN~~~~~~~~~~~-~~~~~~~~~a 224 (380)
++|+|+|+ ++++.+|+|++|||++++|.+ |++.+++..+++ +|+.|++||+|++++++... .+..++.+++
T Consensus 69 s~A~G~a~----d~~d~iv~~vvGDGE~eeG~lA~~W~a~~~~~~~~~~~vLpIld~Ng~~i~~pt~~~~~~~e~l~~~~ 144 (227)
T cd02011 69 SHAYGAVF----DNPDLIVACVVGDGEAETGPLATSWHSNKFLNPATDGAVLPILHLNGYKISNPTILARISHEELEALF 144 (227)
T ss_pred HHHHHhhh----cCCCcEEEEEECcCHHHHHhHHHHHHhhhhhcccccCCeEEEEEcCCCcccCCccccccCchhHHHHH
Confidence 99999974 578899999999999999996 999999999999 79999999999999999855 5577899999
Q ss_pred hhcCceEEEEeCCCHHHHHHHHHHHHHHhh
Q 016903 225 RAYGVRSIRVDGNDALAIYSAVHAAREMAI 254 (380)
Q Consensus 225 ~a~G~~~~~VdG~D~~av~~a~~~a~~~ar 254 (380)
++|||+++.|||||+.++++++++|++++|
T Consensus 145 ~~yG~~~~~VDG~D~~av~~~~a~a~~~~~ 174 (227)
T cd02011 145 RGYGYEPYFVEGDDPETMHQAMAATLDWAI 174 (227)
T ss_pred HhCCCceEEECCCCHHHHHHHHHHHHHHHH
Confidence 999999999999999999999998887544
No 37
>COG0021 TktA Transketolase [Carbohydrate transport and metabolism]
Probab=99.91 E-value=3.6e-23 Score=211.11 Aligned_cols=176 Identities=25% Similarity=0.293 Sum_probs=146.6
Q ss_pred CcEEEcccccHHHHH------HcCC--CHHHHHHHhhcCCCCCCCCCCCccccCC-CCCCccccCcccccchHHHHHHHH
Q 016903 87 DDFVVPQYREPGVLL------WRGF--SMQEFANQCFGNKADYGKGRQMPIHYGS-NKHNYFTVSSTIATQLPHAVGAAY 157 (380)
Q Consensus 87 ~D~v~~~yR~~~~~l------~~G~--~~~~~~~e~~g~~~~~~~G~~~~~H~~~-~~~~~~~~~g~lG~~lp~A~G~A~ 157 (380)
.|.++.+ -||+-+| ..|+ ++++ +.+|+. .|+..|+||.. ..+++..++|+||+|++.|+|+|+
T Consensus 59 RDRFVLS-aGHgSmllYsllhl~Gy~ls~ed-Lk~FRQ------~~SkTpGHPE~~~t~GVe~TTGPLGQGianAVGmAl 130 (663)
T COG0021 59 RDRFVLS-AGHGSMLLYSLLHLTGYDLSLED-LKNFRQ------LGSKTPGHPEYGHTPGVEATTGPLGQGLANAVGMAL 130 (663)
T ss_pred CccEEec-CCchhHHHHHHHHHccCCCCHHH-HHhhcc------CCCCCCCCCCcCCCCCeEeccCccchhHHHHHHHHH
Confidence 3665554 3554333 2465 5554 444654 37778999884 467888899999999999999999
Q ss_pred HhhhcC-----C-----CCeeEEEeCccccCcchHHHHHHHHHHcCC-CEEEEEEcCCcccccccccccCCcCHHHHHhh
Q 016903 158 ALKMDR-----K-----DACAVTYFGDGGTSEGDFHAALNFSAVTEA-PVIFICRNNGWAISTPISDQFRSDGAVVKGRA 226 (380)
Q Consensus 158 A~k~~~-----~-----~~~vv~~~GDG~~~eG~~~Eal~~A~~~~L-pvi~vv~NN~~~~~~~~~~~~~~~~~~~~a~a 226 (380)
|.|+.. + |..|+|++|||+++||+.+|+..+|+.++| ++|++.++|.++|++.+...+ ..|+.+|+++
T Consensus 131 Ae~~La~~fn~~g~~ivdh~tYvl~GDGclmEGvs~EA~slAG~l~L~kLIvlyD~N~IsiDG~~~~~f-~ed~~~RfeA 209 (663)
T COG0021 131 AEKHLAALFNRPGFDIVDHYTYVLVGDGCLMEGVSHEAASLAGHLKLGKLIVLYDSNDISIDGDTSLSF-TEDVAKRFEA 209 (663)
T ss_pred HHHHHHhhhCCCCCccccceEEEEecCchHhcccHHHHHHHHhhcCCCcEEEEEeCCCceeccCccccc-chhHHHHHHh
Confidence 998642 2 468999999999999999999999999999 799999999999999988776 6789999999
Q ss_pred cCceEE-EEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCCCCCC
Q 016903 227 YGVRSI-RVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTT 274 (380)
Q Consensus 227 ~G~~~~-~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t~R~~gHs~ 274 (380)
|||+++ .+||||++++..|+++|... .++|++|+|+|.-.+|-..
T Consensus 210 yGW~vi~~~DG~D~e~I~~Ai~~Ak~~---~dkPtlI~~kTiIG~Gsp~ 255 (663)
T COG0021 210 YGWNVIRVIDGHDLEAIDKAIEEAKAS---TDKPTLIIVKTIIGKGSPN 255 (663)
T ss_pred cCCeEEEecCCCCHHHHHHHHHHHHhc---CCCCeEEEEEeeeecCCCC
Confidence 999999 68999999999999999863 6799999999999888665
No 38
>PRK13012 2-oxoacid dehydrogenase subunit E1; Provisional
Probab=99.91 E-value=1.3e-22 Score=218.00 Aligned_cols=230 Identities=19% Similarity=0.210 Sum_probs=169.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc----CCcccccccchhhHHHHHHHhcCC------CCcEEEcc-cccHH---HH
Q 016903 35 EGVAIKMYNDMVTLQTMDTIFYEAQRQ----GRISFYLTTSGEEAINIASAAAIK------NDDFVVPQ-YREPG---VL 100 (380)
Q Consensus 35 ~e~l~~~y~~M~~~R~~e~~~~~~~~~----g~i~~~~~~~G~Ea~~~~~~~~l~------~~D~v~~~-yR~~~---~~ 100 (380)
+.++.+-.+..+|-..++......... |.++.+.++. +...++....|+ ..|.|++. |-..+ .+
T Consensus 85 d~~~e~~i~~~iR~~a~~mv~~A~~~~~~~GGH~~s~~S~a--~i~~vl~~~~~r~~~~~~~~D~V~skGHasp~lYA~~ 162 (896)
T PRK13012 85 DLALEERLAAIIRWNALAMVVRANRAYGELGGHIASYASAA--DLFEVGFNHFFRGRDDAGGGDLVYFQPHSAPGIYARA 162 (896)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCcccHHHH--HHHHHHHHhhcCCCCCCCCCCEEEECcchHHHHHHHH
Confidence 344555455555555554433222112 3333332222 334444445566 46876662 33322 34
Q ss_pred HHcCCCHHHHHHHhhcCCCCCCCCCCCccccCCCC-CC-ccccCcccccchHHHHHHHHHhhh-------cCCCCeeEEE
Q 016903 101 LWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNK-HN-YFTVSSTIATQLPHAVGAAYALKM-------DRKDACAVTY 171 (380)
Q Consensus 101 l~~G~~~~~~~~e~~g~~~~~~~G~~~~~H~~~~~-~~-~~~~~g~lG~~lp~A~G~A~A~k~-------~~~~~~vv~~ 171 (380)
...|+..++-+..|+... .|.+++.||.... ++ +..++||||.|+++|+|.|++.|+ ...+++|+|+
T Consensus 163 ~l~G~l~~e~L~~fR~~~----~~~gl~~~P~p~~~p~~~e~~TGSlG~G~~~ai~~A~~~ryl~~~g~~~~~~~~v~~~ 238 (896)
T PRK13012 163 FLEGRLSEEQLDHFRQEI----GGPGLSSYPHPWLMPDFWQFPTGSMGIGPINAIYQARFMRYLQHRGLKDTSGRKVWGF 238 (896)
T ss_pred HHcCCCCHHHHHHhcCCC----CCCCCCCCCCcCCCCCCEecCCCCchHHHHHHHHHHHhcccccccccccCCCCeEEEE
Confidence 457876666677776431 1567888877543 33 667899999999999999999983 4567899999
Q ss_pred eCccccCcchHHHHHHHHHHcCC-CEEEEEEcCCcccccccccccC-CcCHHHHHhhcCceEEEE---------------
Q 016903 172 FGDGGTSEGDFHAALNFSAVTEA-PVIFICRNNGWAISTPISDQFR-SDGAVVKGRAYGVRSIRV--------------- 234 (380)
Q Consensus 172 ~GDG~~~eG~~~Eal~~A~~~~L-pvi~vv~NN~~~~~~~~~~~~~-~~~~~~~a~a~G~~~~~V--------------- 234 (380)
+|||+++||.+|||+.+|++++| |+||||++|..++++++..... ..++.++++++||++++|
T Consensus 239 lGDGEl~Eg~~~eA~~~A~~~~LdNLi~ivD~N~~~lDG~v~~~~~~~~~l~~~f~a~GW~Vi~v~wg~~wd~l~~~d~~ 318 (896)
T PRK13012 239 FGDGEMDEPESIAALSLAAREGLDNLVFVINCNLQRLDGPVRGNGRIIQELEALFRGAGWNVIKVLWGSDWDALFARDTT 318 (896)
T ss_pred EchhhhccHHHHHHHHHHHHhCCCcEEEEEECCCccccCccccccccchHHHHHHHhCCCEEEEEecccchHHHhcCCCc
Confidence 99999999999999999999999 8999999999999999887544 468999999999999999
Q ss_pred -----------e-------------------------------------------CCCHHHHHHHHHHHHHHhhccCCcE
Q 016903 235 -----------D-------------------------------------------GNDALAIYSAVHAAREMAIGEGRPI 260 (380)
Q Consensus 235 -----------d-------------------------------------------G~D~~av~~a~~~a~~~ar~~~gP~ 260 (380)
| |||+.+|++|++.|.+. .++|+
T Consensus 319 ~~l~~~~~~~~Dg~yq~~~~~~g~~~r~~ff~~~~~~~~lv~~~~d~~i~~l~rgGHD~~~i~~A~~~a~~~---~~~Pt 395 (896)
T PRK13012 319 GALVRRFAETVDGQFQTFKANDGAYNREHFFGQDPELAALVAHLSDEDIDRLKRGGHDPRKVYAAYAAAVRH---KGQPT 395 (896)
T ss_pred cHHHHHHHhCCcHHHHHHhhcchHHHHHHhccccHHHHHHhhcccHHhhhhhcCCCCCHHHHHHHHHHHHhC---CCCCE
Confidence 8 99999999999988764 46899
Q ss_pred EEEEEeecCCCCC
Q 016903 261 LIEALTYRVGHHT 273 (380)
Q Consensus 261 lIe~~t~R~~gHs 273 (380)
+|.++|.+.+|-+
T Consensus 396 vIla~TvkG~G~~ 408 (896)
T PRK13012 396 VILAKTKKGYGMG 408 (896)
T ss_pred EEEEEeeecCCCC
Confidence 9999999999965
No 39
>PLN02582 1-deoxy-D-xylulose-5-phosphate synthase
Probab=99.91 E-value=7.2e-23 Score=216.12 Aligned_cols=232 Identities=13% Similarity=0.162 Sum_probs=165.8
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccchhhHHHHHHHhcCC-CCcEEEc--ccccHHHHHHc
Q 016903 27 DSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRISFYLTTSGEEAINIASAAAIK-NDDFVVP--QYREPGVLLWR 103 (380)
Q Consensus 27 ~~~~~~~~~e~l~~~y~~M~~~R~~e~~~~~~~~~g~i~~~~~~~G~Ea~~~~~~~~l~-~~D~v~~--~yR~~~~~l~~ 103 (380)
|.+.+.++.++|.++-..+ |-+.++.. .. ..|.++ +++|---+.+++-..|+ +.|.++. .|-..++.+..
T Consensus 40 p~dlk~l~~~~l~~la~~i-R~~ii~~~--~~-~~GH~g---~~Ls~vel~~aL~~~~~~p~Dr~i~s~GH~ay~~~~l~ 112 (677)
T PLN02582 40 PIHMKNLSVKELKQLADEL-RSDVIFNV--SK-TGGHLG---SSLGVVELTVALHYVFNAPQDKILWDVGHQSYPHKILT 112 (677)
T ss_pred HHHHhhCCHHHHHHHHHHH-HHHHHHHH--Hh-cCCCcC---ccccHHHHHHHHHHhhCCCCCeEEEECcchHHHHHHHH
Confidence 4456778888877654442 33333332 21 134443 34443333444445554 7798887 47777888888
Q ss_pred CCCHHHHHHHhhcCCCCCCCCCCCccccCCCC-CCccccCcccccchHHHHHHHHHhhhcCCCCeeEEEeCccccCcchH
Q 016903 104 GFSMQEFANQCFGNKADYGKGRQMPIHYGSNK-HNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDF 182 (380)
Q Consensus 104 G~~~~~~~~e~~g~~~~~~~G~~~~~H~~~~~-~~~~~~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~ 182 (380)
|. .+-|..++. .|+ +++|+...+ ++....+|++|+++++|+|+|+|.++++.+.+|+|++|||++++|.+
T Consensus 113 gr--~~~l~~~r~------~g~-l~g~p~~~e~~~~~~~~G~~g~~ls~a~G~A~a~~~~~~~~~v~~viGDG~~~~G~~ 183 (677)
T PLN02582 113 GR--RDKMHTMRQ------TNG-LSGFTKRAESEYDCFGTGHSSTTISAGLGMAVGRDLKGKKNNVVAVIGDGAMTAGQA 183 (677)
T ss_pred cc--HHHhccccc------CCC-cCCCCCCCCCCCceeccchhhhhHHHHHHHHHHHHhcCCCCEEEEEecccccchhhH
Confidence 87 233555543 244 888887543 67778899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCEEEEEEcCCc-cc--------ccccccc-------cCC---------------------cCHH----
Q 016903 183 HAALNFSAVTEAPVIFICRNNGW-AI--------STPISDQ-------FRS---------------------DGAV---- 221 (380)
Q Consensus 183 ~Eal~~A~~~~Lpvi~vv~NN~~-~~--------~~~~~~~-------~~~---------------------~~~~---- 221 (380)
|||||.|+.+++|+|+||+||+. ++ +...... ... ..+.
T Consensus 184 ~Ealn~a~~~~~~li~iv~~N~~~s~~~~~~~s~~~~vg~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (677)
T PLN02582 184 YEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPAPPVGALSSALSRLQSSRPLRELREVAKGVTKQIGGPMHELAAKVD 263 (677)
T ss_pred HHHHHHHHhhCcCEEEEEECCCCccccccccCCCCCCccHHHHHHHHHhcchhHHHHHHHHHHHHHhCcHhHHHHHHHHH
Confidence 99999999999999999999996 23 1111000 000 0111
Q ss_pred ------------HHHhhcCceEE-EEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCCCCCCCC
Q 016903 222 ------------VKGRAYGVRSI-RVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSD 276 (380)
Q Consensus 222 ------------~~a~a~G~~~~-~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t~R~~gHs~~D 276 (380)
.++++|||.++ .|||||++++.++++.+.+. ..++|++|.++|-+..|...+.
T Consensus 264 ~~~k~~~~~~~~~~fe~~G~~y~g~iDGHd~~~L~~al~~~k~~--~~~~P~vihv~T~KGkG~~~ae 329 (677)
T PLN02582 264 EYARGMISGSGSTLFEELGLYYIGPVDGHNIDDLVTILREVKST--KTTGPVLIHVVTEKGRGYPYAE 329 (677)
T ss_pred HHhhhccCccccchHHHcCCeEEeeeCCCCHHHHHHHHHHHHhc--CCCCCEEEEEEecCCCCCChhh
Confidence 24899999977 79999999999999988753 1169999999999999877653
No 40
>PRK09405 aceE pyruvate dehydrogenase subunit E1; Reviewed
Probab=99.90 E-value=3.6e-22 Score=213.90 Aligned_cols=230 Identities=19% Similarity=0.203 Sum_probs=172.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhc----CCcccccccchhhHHHHHHHhcCCC------CcEEEcc-cccH---HH
Q 016903 34 SEGVAIKMYNDMVTLQTMDTIFYEAQRQ----GRISFYLTTSGEEAINIASAAAIKN------DDFVVPQ-YREP---GV 99 (380)
Q Consensus 34 ~~e~l~~~y~~M~~~R~~e~~~~~~~~~----g~i~~~~~~~G~Ea~~~~~~~~l~~------~D~v~~~-yR~~---~~ 99 (380)
.+.++.+.....+|...++......... |.++.+.++ -+...++....|+. +|+|++. |-.. +.
T Consensus 76 g~~~~e~~i~~~iR~~a~~mv~~An~~~~~~GGH~~s~~S~--a~i~~vl~~~~~r~~~~~~~~D~V~skGHasp~lYA~ 153 (891)
T PRK09405 76 GDLELERRIRSYIRWNAAAMVLRANKKDLGLGGHISSFASS--ATLYEVGFNHFFRAPNEPHGGDLVFFQGHASPGIYAR 153 (891)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCcccChHHH--HHHHHHHHHhhCCCCCCCCCCCEEEECchHHHHHHHH
Confidence 3455666666776666665544332211 333222222 13334445556664 6877752 3322 23
Q ss_pred HHHcCCCHHHHHHHhhcCCCCCCCCCCCccccCCCC-CC-ccccCcccccchHHHHHHHHHhhh-------cCCCCeeEE
Q 016903 100 LLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNK-HN-YFTVSSTIATQLPHAVGAAYALKM-------DRKDACAVT 170 (380)
Q Consensus 100 ~l~~G~~~~~~~~e~~g~~~~~~~G~~~~~H~~~~~-~~-~~~~~g~lG~~lp~A~G~A~A~k~-------~~~~~~vv~ 170 (380)
+...|+..++-|..|+.. +.|+++++||.... ++ ....+++||.|++.|+|.|++.|+ .+.+++|+|
T Consensus 154 ~~l~G~l~~e~L~~fR~~----~~g~gl~syPhp~~~p~~~~~~tgS~G~G~~~a~~~A~~~kyl~~~~~~~~~~~rv~~ 229 (891)
T PRK09405 154 AFLEGRLTEEQLDNFRQE----VDGKGLSSYPHPWLMPDFWQFPTVSMGLGPIMAIYQARFLKYLENRGLKDTSDQKVWA 229 (891)
T ss_pred HHHcCCCCHHHHHHhcCC----CCCCCCCCCCCcCCCCCCeecCccccchhHHHHHHHHHhCccccccccccCCCceEEE
Confidence 445787667777777643 24678888877543 33 456789999999999999999993 456789999
Q ss_pred EeCccccCcchHHHHHHHHHHcCC-CEEEEEEcCCcccccccccccC-CcCHHHHHhhcCceEEEE--------------
Q 016903 171 YFGDGGTSEGDFHAALNFSAVTEA-PVIFICRNNGWAISTPISDQFR-SDGAVVKGRAYGVRSIRV-------------- 234 (380)
Q Consensus 171 ~~GDG~~~eG~~~Eal~~A~~~~L-pvi~vv~NN~~~~~~~~~~~~~-~~~~~~~a~a~G~~~~~V-------------- 234 (380)
++|||+++||.+|||+.+|++++| |+||||++|..++++++..... ..++.+++++|||+++.|
T Consensus 230 ~~GDGEldEg~~~EA~~~A~~~~LdNLi~ivD~N~q~lDG~v~~~~~~~~~l~~~f~a~GW~Vi~v~wG~~wd~l~~~d~ 309 (891)
T PRK09405 230 FLGDGEMDEPESLGAISLAAREKLDNLIFVINCNLQRLDGPVRGNGKIIQELEGIFRGAGWNVIKVIWGSRWDPLLAKDT 309 (891)
T ss_pred EEcchhhccHHHHHHHHHHHHhCCCCEEEEEECCCcccCCccccccccchhHHHHHhhCCCEEEEEeccccchhhhccCC
Confidence 999999999999999999999999 8999999999999999886433 568999999999999999
Q ss_pred ------------e-------------------------------------------CCCHHHHHHHHHHHHHHhhccCCc
Q 016903 235 ------------D-------------------------------------------GNDALAIYSAVHAAREMAIGEGRP 259 (380)
Q Consensus 235 ------------d-------------------------------------------G~D~~av~~a~~~a~~~ar~~~gP 259 (380)
| |||+.+|++|++.|.+. .++|
T Consensus 310 ~g~L~~~~~~~~Dg~yq~~~~~~ga~~R~~ffg~~~~~~~lv~~~sD~~i~~l~~gGHD~~~i~~A~~~A~~~---~~~P 386 (891)
T PRK09405 310 SGKLVQLMNETVDGDYQTYKAKDGAYVREHFFGKYPETKALVADMSDDDIWALNRGGHDPRKVYAAYKAAVEH---KGQP 386 (891)
T ss_pred ccHHHHHHHhCCcHHHHHHHhcccHHHHHHhcCCCHHHHHHHhhCCHHHHHHhccCCCCHHHHHHHHHHHHhC---CCCC
Confidence 4 99999999999988863 4789
Q ss_pred EEEEEEeecCCCC
Q 016903 260 ILIEALTYRVGHH 272 (380)
Q Consensus 260 ~lIe~~t~R~~gH 272 (380)
++|.++|.+.+|.
T Consensus 387 tvIia~TvkG~G~ 399 (891)
T PRK09405 387 TVILAKTIKGYGM 399 (891)
T ss_pred EEEEEeceecCCC
Confidence 9999999999997
No 41
>KOG0523 consensus Transketolase [Carbohydrate transport and metabolism]
Probab=99.89 E-value=4.8e-22 Score=200.81 Aligned_cols=217 Identities=22% Similarity=0.228 Sum_probs=171.9
Q ss_pred HHHHHHHHHHHHHHHHhcCCcccccccchhhHHHHHHHhcCC---------CCcEEEcc--ccc---HHHHHHcCCCHHH
Q 016903 44 DMVTLQTMDTIFYEAQRQGRISFYLTTSGEEAINIASAAAIK---------NDDFVVPQ--YRE---PGVLLWRGFSMQE 109 (380)
Q Consensus 44 ~M~~~R~~e~~~~~~~~~g~i~~~~~~~G~Ea~~~~~~~~l~---------~~D~v~~~--yR~---~~~~l~~G~~~~~ 109 (380)
.|-.+|..+-.+......|..++..+.. +...+-.-..++ ..|.++.+ |-+ .++....|....+
T Consensus 13 ~~n~lri~si~~~~~a~sghp~s~~s~A--~~~~vlf~~~mr~~~~~p~~~n~Drfvls~GHa~~llYa~~~l~G~~~~e 90 (632)
T KOG0523|consen 13 AVNNLRILSIDATSAAKSGHPGSPLSLA--PIMHVLFFEVMRYNPADPYWFNRDRFVLSNGHACPLLYAHWHLAGYDREE 90 (632)
T ss_pred HhhhhhhhhHHHHHhhhcCCCCCccccc--hhhhhhhhhheecccCCcCCCCCceEEEeccccchHHHHHHHHhccCcHH
Confidence 4666677776666665666654433221 333333222232 13766665 444 3455567887777
Q ss_pred HHHHhhcCCCCCCCCCCCccccCCCCCCccccCcccccchHHHHHHHHHhhhcCC-CCeeEEEeCccccCcchHHHHHHH
Q 016903 110 FANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRK-DACAVTYFGDGGTSEGDFHAALNF 188 (380)
Q Consensus 110 ~~~e~~g~~~~~~~G~~~~~H~~~~~~~~~~~~g~lG~~lp~A~G~A~A~k~~~~-~~~vv~~~GDG~~~eG~~~Eal~~ 188 (380)
-|.+|+.. |+..+.|+....++....+|++|++++.|+|+|++.|+.+. +..|+|++|||+++||..|||+++
T Consensus 91 dl~~~Rq~------~s~t~ghp~~~~~~v~v~TG~lgQgis~a~GmA~~~k~~~k~~~rv~~vlGDG~~~eG~~~EA~s~ 164 (632)
T KOG0523|consen 91 DLKNFRQI------GSDTPGHPEPELPGVEVATGPLGQGISNAVGMAYAGKHLGKASNRVYCVLGDGCLTEGSVWEAMSL 164 (632)
T ss_pred HHHHHHhh------CCCCCCCCcccCCCceeccCCccchHHHHHHHHHHHHhhccccceEEEEEcCchhccchHHHHHhh
Confidence 78888764 77788999877777788899999999999999999999887 889999999999999999999999
Q ss_pred HHHcCC-CEEEEEEcCCcccccccccccCCcCHHH-HHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEe
Q 016903 189 SAVTEA-PVIFICRNNGWAISTPISDQFRSDGAVV-KGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALT 266 (380)
Q Consensus 189 A~~~~L-pvi~vv~NN~~~~~~~~~~~~~~~~~~~-~a~a~G~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t 266 (380)
|+.|+| ++|+|.+||+.+++++++..+. .++.+ ++++|||++..|||+|++++.+++.+|.. ..++|++|-+.|
T Consensus 165 Ag~l~ldnLVai~D~n~is~~g~t~~~~~-~dV~~~r~ea~g~~~~~V~~~d~d~i~ka~~~a~~---~k~kpt~i~~~t 240 (632)
T KOG0523|consen 165 AGHLKLDNLVAIYDNNKISIDGATSLGFD-EDVYQLRFEAFGWNVIIVDGGDVDEIRKAIGKAKS---VKGKPTAIKATT 240 (632)
T ss_pred hhhcccCCEEEEEccccccCCCCCccccc-ccHHHHHHHHhCceEEEEcCcCHHHHHHHHhhhhh---ccCCceeeeeee
Confidence 999999 7999999999999999887765 45666 99999999999999999999999999874 357999999999
Q ss_pred ecCCCC
Q 016903 267 YRVGHH 272 (380)
Q Consensus 267 ~R~~gH 272 (380)
+..+|-
T Consensus 241 ~~g~G~ 246 (632)
T KOG0523|consen 241 FIGRGS 246 (632)
T ss_pred eeecCc
Confidence 998874
No 42
>PF13292 DXP_synthase_N: 1-deoxy-D-xylulose-5-phosphate synthase; PDB: 2O1X_C 2O1S_B.
Probab=99.82 E-value=5.2e-20 Score=171.74 Aligned_cols=220 Identities=17% Similarity=0.175 Sum_probs=150.4
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccchhhHHHHHHHhcCC-CCcEEEc--ccccHHHHHHc
Q 016903 27 DSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRISFYLTTSGEEAINIASAAAIK-NDDFVVP--QYREPGVLLWR 103 (380)
Q Consensus 27 ~~~~~~~~~e~l~~~y~~M~~~R~~e~~~~~~~~~g~i~~~~~~~G~Ea~~~~~~~~l~-~~D~v~~--~yR~~~~~l~~ 103 (380)
|.+...+|.++|..+-..+ |.+ .+....+.| +.+.++.|---..+|+...++ |.|.++. .|....|-+..
T Consensus 7 p~dlk~ls~~eL~~La~ei---R~~--ii~~vs~~G--GHl~snLGvVELTiALH~vFd~p~DkivwDvGHQ~Y~HKiLT 79 (270)
T PF13292_consen 7 PEDLKKLSIEELEQLAQEI---REF--IIETVSKTG--GHLASNLGVVELTIALHYVFDSPKDKIVWDVGHQAYVHKILT 79 (270)
T ss_dssp HHHHTTS-GGGHHHHHHHH---HHH--HHHHCTCCC--STHHHHHCCHHHHHHHHHHS-TTTSEEEESSSTT-HHHHHCT
T ss_pred HHHHHcCCHHHHHHHHHHH---HHH--HHHHHhhcC--CCCCCCccHHHHHHHHHHHhCCCCCeEEEecccccchhhhcc
Confidence 4456788888888777665 543 222222233 567788888888899999997 7899887 69999999998
Q ss_pred CCCHHHHHHHhhcCCCCCCCCCCCccccCCCC-CCccccCcccccchHHHHHHHHHhhhcCCCCeeEEEeCccccCcchH
Q 016903 104 GFSMQEFANQCFGNKADYGKGRQMPIHYGSNK-HNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDF 182 (380)
Q Consensus 104 G~~~~~~~~e~~g~~~~~~~G~~~~~H~~~~~-~~~~~~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~ 182 (380)
|.. +.|..++.. .|+++.+...+ ..-....|+-+.+++.|+|+|.|..+.+.+..||+++|||++.-|+.
T Consensus 80 GR~--~~f~TlRq~-------gGlSGF~~r~ES~~D~f~~GHsstsiSaa~Gma~ar~l~~~~~~vVaVIGDGalt~Gma 150 (270)
T PF13292_consen 80 GRR--DRFHTLRQY-------GGLSGFPKRSESEYDAFGAGHSSTSISAALGMAVARDLKGEDRKVVAVIGDGALTGGMA 150 (270)
T ss_dssp TTC--CCGGGTTST-------TS--SS--TTT-TT--S--SSSS-HHHHHHHHHHHHHHHTS---EEEEEETTGGGSHHH
T ss_pred CcH--HHhchhhhc-------CCcCCCCCcccCCCCcccCCccHhHHHHHHHHHHHHHhcCCCCcEEEEECCcchhHHHH
Confidence 863 345555532 34555554333 33455689999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCEEEEEEcCCcccccccccc-------cC--------------------CcC------------HHHH
Q 016903 183 HAALNFSAVTEAPVIFICRNNGWAISTPISDQ-------FR--------------------SDG------------AVVK 223 (380)
Q Consensus 183 ~Eal~~A~~~~Lpvi~vv~NN~~~~~~~~~~~-------~~--------------------~~~------------~~~~ 223 (380)
+||||-|+..+-++|+|+++|+.+|+...... .. ... ....
T Consensus 151 ~EALN~~g~~~~~liVILNDN~mSIs~nvGals~~L~~l~~~~~y~~~k~~~~~~l~~~~~~~~~~~r~~~s~K~~~~~l 230 (270)
T PF13292_consen 151 FEALNNAGHLKSNLIVILNDNEMSISPNVGALSKYLSKLRSSPTYNKLKEDVKSLLKKIPPIEEFAKRIKESLKGFSPNL 230 (270)
T ss_dssp HHHHHHHHHHT-SEEEEEEE-SBSSSB--SSHCCC-------------------------------------------CC
T ss_pred HHHHHHHHhcCCCEEEEEeCCCcccCCCcchHHHHHHhccchhHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhhhhHHH
Confidence 99999999999999999999999887543210 00 000 0124
Q ss_pred HhhcCceEEE-EeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEe
Q 016903 224 GRAYGVRSIR-VDGNDALAIYSAVHAAREMAIGEGRPILIEALT 266 (380)
Q Consensus 224 a~a~G~~~~~-VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t 266 (380)
++.+|+.++- |||||+.++.++++.+.+ -+||+||.+.|
T Consensus 231 Fe~LG~~Y~GPiDGHdl~~Li~~l~~~K~----~~gPvllHV~T 270 (270)
T PF13292_consen 231 FEELGFDYIGPIDGHDLEELIEVLENAKD----IDGPVLLHVIT 270 (270)
T ss_dssp CHHCT-EEEEEEETT-HHHHHHHHHHHCC----SSSEEEEEEE-
T ss_pred HHHcCCeEEeccCCCCHHHHHHHHHHHhc----CCCCEEEEEeC
Confidence 6777999886 999999999999888765 58999999987
No 43
>COG1154 Dxs Deoxyxylulose-5-phosphate synthase [Coenzyme metabolism / Lipid metabolism]
Probab=99.80 E-value=8.3e-19 Score=178.45 Aligned_cols=229 Identities=16% Similarity=0.164 Sum_probs=174.6
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccchhhHHHHHHHhcCC-CCcEEEc--ccccHHHHHH
Q 016903 26 PDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRISFYLTTSGEEAINIASAAAIK-NDDFVVP--QYREPGVLLW 102 (380)
Q Consensus 26 ~~~~~~~~~~e~l~~~y~~M~~~R~~e~~~~~~~~~g~i~~~~~~~G~Ea~~~~~~~~l~-~~D~v~~--~yR~~~~~l~ 102 (380)
.|.+.+.+|.++|..+-..+ |.+ .+......| +...++.|---..+++...++ |.|.++. .|....|-+.
T Consensus 10 ~P~dLk~ls~~eL~~La~Ei---R~~--li~~vS~~G--GHlgsnLGvVELTiALH~VF~sP~D~~IwDVgHQaYpHKiL 82 (627)
T COG1154 10 SPADLKKLSIEELPQLADEI---REF--LLEVVSATG--GHLGSNLGVVELTIALHYVFDSPKDKLIWDVGHQAYPHKIL 82 (627)
T ss_pred CHHHHhhCCHHHHHHHHHHH---HHH--HHHHhccCC--CccCCCcChhhhhHHHHHHhCCCCCCeEEecCcccchhHHh
Confidence 45567889999998876665 433 222222333 466678888888889988887 7898887 7999999999
Q ss_pred cCCCHHHHHHHhhcCCCCCCCCCCCccccCCCC-CCccccCcccccchHHHHHHHHHhhhcCCCCeeEEEeCccccCcch
Q 016903 103 RGFSMQEFANQCFGNKADYGKGRQMPIHYGSNK-HNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGD 181 (380)
Q Consensus 103 ~G~~~~~~~~e~~g~~~~~~~G~~~~~H~~~~~-~~~~~~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~ 181 (380)
.|.. +-|..++.+ .+++..+...+ ..-+..+|+-+++++.|+|+|.|..+++.++.||+++|||++.-|+
T Consensus 83 TGR~--e~f~tlRq~-------~GlsGf~~r~ESe~D~f~~GHsSTSiSaalG~A~A~~~~g~~~~vvaVIGDGAlt~Gm 153 (627)
T COG1154 83 TGRR--EQFDTLRQK-------DGLSGFPKREESEHDWFGVGHSSTSISAALGMAKARDLKGEDRNVVAVIGDGALTGGM 153 (627)
T ss_pred cCch--hhcchhhhc-------CCCCCCCCcccCCCcccccCchHHHHHHHhhHHHHHHhcCCCCcEEEEECCccccchH
Confidence 9974 566666543 34444444333 3445678999999999999999999999999999999999999999
Q ss_pred HHHHHHHHH-HcCCCEEEEEEcCCcccccccccc-------cC----------C------------------cC------
Q 016903 182 FHAALNFSA-VTEAPVIFICRNNGWAISTPISDQ-------FR----------S------------------DG------ 219 (380)
Q Consensus 182 ~~Eal~~A~-~~~Lpvi~vv~NN~~~~~~~~~~~-------~~----------~------------------~~------ 219 (380)
.+||||.|+ ..+-|+|+|+++|..+|+.+.... .. . .+
T Consensus 154 A~EALN~ag~~~~~~~iVILNDNeMSIs~nvGal~~~L~~l~~~~~y~~~~~~~kk~l~~~~~~~~~~~~r~e~~~K~l~ 233 (627)
T COG1154 154 AFEALNNAGADLKSNLIVILNDNEMSISPNVGALSKHLARLRSGPFYQSLREGGKKVLSKVGPPLKRFAKRAEESIKGLL 233 (627)
T ss_pred HHHHHhhhhhccCCCEEEEEeCCCcccCCCccHHHHHHHHHhccchHHHHHHHHHHHHHhhchHHHHHHHHHHHhhhccc
Confidence 999999998 445689999999999998654210 00 0 00
Q ss_pred -HHHHHhhcCceEEE-EeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCCCCCC
Q 016903 220 -AVVKGRAYGVRSIR-VDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTT 274 (380)
Q Consensus 220 -~~~~a~a~G~~~~~-VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t~R~~gHs~ 274 (380)
..-.++.+|+.++- |||||++++..+++.+.+ .++|+||.+.|-+..|=..
T Consensus 234 ~~~~lFeelGf~YiGPiDGHni~~Li~~Lk~~kd----~~gPvllHv~T~KGKGY~p 286 (627)
T COG1154 234 VPGTLFEELGFNYIGPIDGHNLEELIPTLKNAKD----LKGPVLLHVVTKKGKGYKP 286 (627)
T ss_pred CchhhHHHhCCeeECCcCCCCHHHHHHHHHHHhc----CCCCEEEEEEecCCCCCCh
Confidence 00267889999886 999999999999988775 5899999999988877443
No 44
>PRK05261 putative phosphoketolase; Provisional
Probab=99.80 E-value=1e-18 Score=185.44 Aligned_cols=201 Identities=21% Similarity=0.237 Sum_probs=155.7
Q ss_pred cccccccchhhHHHHHHHhcCCCC--cEEEcccccHH------HHHHcC--------CCHHHH-HHHhhcCCCCCCCCCC
Q 016903 64 ISFYLTTSGEEAINIASAAAIKND--DFVVPQYREPG------VLLWRG--------FSMQEF-ANQCFGNKADYGKGRQ 126 (380)
Q Consensus 64 i~~~~~~~G~Ea~~~~~~~~l~~~--D~v~~~yR~~~------~~l~~G--------~~~~~~-~~e~~g~~~~~~~G~~ 126 (380)
+|.+-++.|+-.+.+++...++.. |+++..--||+ .+..-| ++..+. |..++-+-. .-.+
T Consensus 49 ~GHwGt~pgln~vyahln~li~~~~~~~~~V~g~GHg~p~~~a~~~L~Gs~~~~yp~is~d~~gl~~lfrqfs---~pgg 125 (785)
T PRK05261 49 LGHWGTTPGLNFIYAHLNRLIRKYDLNMIYITGPGHGGPAMVANAYLEGTYSEIYPEITQDEEGMARLFKQFS---FPGG 125 (785)
T ss_pred CCCCCCcHHHHHHHHHHHHHHhhcCCceEEEeCCCccHHHHHHHHHHcCCCcccCCCCCccHHHHHHHHHhcc---CCCC
Confidence 366777889999888888888764 65554444553 223356 232231 332332211 1236
Q ss_pred CccccCCCCCCccccCcccccchHHHHHHHHHhhhcCCCCeeEEEeCccccCcchH---HHHHHHHHHcCC-CEEEEEEc
Q 016903 127 MPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDF---HAALNFSAVTEA-PVIFICRN 202 (380)
Q Consensus 127 ~~~H~~~~~~~~~~~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~---~Eal~~A~~~~L-pvi~vv~N 202 (380)
+++|+....+|+...+|+||+++++|+|+|+. +++.+|+|++|||++++|.+ |++.+++...++ +|+.|+++
T Consensus 126 ~~sH~~~~tPGi~~~~G~LG~gls~A~G~Al~----~~d~iv~~~vGDGE~EeG~lAa~W~~~~~~~~~~~g~vLPIld~ 201 (785)
T PRK05261 126 IPSHAAPETPGSIHEGGELGYSLSHAYGAAFD----NPDLIVACVVGDGEAETGPLATSWHSNKFLNPATDGAVLPILHL 201 (785)
T ss_pred cCCCCCCCCCCeeeCCCchhhHHHHHHHHHHc----CCCCEEEEEECcCchhhhhhHHHhhhhhhcccccCCCEEEEEEe
Confidence 88999877789999999999999999999965 57889999999999999984 888888888889 79999999
Q ss_pred CCcccccccccc-cCCcCHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHH-----------Hhhcc---CCcE--EEEEE
Q 016903 203 NGWAISTPISDQ-FRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAARE-----------MAIGE---GRPI--LIEAL 265 (380)
Q Consensus 203 N~~~~~~~~~~~-~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~a~~-----------~ar~~---~gP~--lIe~~ 265 (380)
|+|+|++++... .+..++.+++++|||+++.|||+|+.+++.+++++++ .||.+ .+|+ +|.++
T Consensus 202 Ng~~Is~pt~~~~~~~e~l~~rf~g~Gw~~i~VDG~D~~av~~a~a~al~~~i~~i~~iq~~Ar~~~~~~~P~wp~Ii~r 281 (785)
T PRK05261 202 NGYKIANPTILARISDEELEALFRGYGYEPYFVEGDDPADMHQEMAAALDTAIEEIRAIQKEAREGGDTTRPRWPMIVLR 281 (785)
T ss_pred cCCcCCCCccccccCcHhHHHHHHHCCCeeEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCceEEEEE
Confidence 999999999865 4457899999999999999999999999988766654 44445 5899 99999
Q ss_pred eecCCC
Q 016903 266 TYRVGH 271 (380)
Q Consensus 266 t~R~~g 271 (380)
|...+|
T Consensus 282 T~kG~g 287 (785)
T PRK05261 282 TPKGWT 287 (785)
T ss_pred CCccCC
Confidence 998776
No 45
>PRK11864 2-ketoisovalerate ferredoxin oxidoreductase subunit beta; Provisional
Probab=99.80 E-value=1.9e-18 Score=166.06 Aligned_cols=167 Identities=19% Similarity=0.134 Sum_probs=136.3
Q ss_pred ccccHHHHHHcCCCHH-HHHHHhhcCCC------CCCCCCCCccccCCCCCCccccCcccccchHHHHHHHHHhhhcCCC
Q 016903 93 QYREPGVLLWRGFSMQ-EFANQCFGNKA------DYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKD 165 (380)
Q Consensus 93 ~yR~~~~~l~~G~~~~-~~~~e~~g~~~------~~~~G~~~~~H~~~~~~~~~~~~g~lG~~lp~A~G~A~A~k~~~~~ 165 (380)
.||||+.+..+|.++. .++.+.+|+.+ ||+.+.++.+|+.. .++.+..+++|.++++|.|+++|.+.++++
T Consensus 14 ~~~gh~~C~GCG~~~~~~~l~~~lg~~~v~~~~iGC~~~~~g~~p~~~--~~~~~i~~~~G~~~~~A~G~a~A~~~~~~~ 91 (300)
T PRK11864 14 FYPGNAACPGCGAPLGLRYLLKALGEKTVLVIPASCSTVIQGDTPKSP--LTVPVLHTAFAATAAVASGIEEALKARGEK 91 (300)
T ss_pred ecCCCccCCCCCCHHHHHHHHHHhCCCeEEEeCCCccceecCCCCccc--ccccceeehhhChHHHHHHHHHHHHhhCCC
Confidence 5799999999998887 88888888776 77777766666554 356667899999999999999999887665
Q ss_pred C-eeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcccccccccc-----------------cCCcCHHHHHhhc
Q 016903 166 A-CAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQ-----------------FRSDGAVVKGRAY 227 (380)
Q Consensus 166 ~-~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~~~~~~~~~-----------------~~~~~~~~~a~a~ 227 (380)
. .|++++|||++.++.+ |+|+.|+.+++|++|||.||.+.+.|-.+.. ....|+..++.++
T Consensus 92 ~~~Vva~~GDG~~~~~g~-~~l~~A~~~~~~v~~vv~dN~~~~~TGgQ~S~~Tp~ga~t~tsp~G~~~~kkdi~~i~~a~ 170 (300)
T PRK11864 92 GVIVVGWAGDGGTADIGF-QALSGAAERNHDILYIMYDNEAYMNTGIQRSSSTPYGAWTTTTPGGKREHKKPVPDIMAAH 170 (300)
T ss_pred CcEEEEEEccCccccccH-HHHHHHHHhCcCEEEEEECCeeeecCCCCCCCCCcCCCccccCCCCCcCCCCCHHHHHHHc
Confidence 4 4555999999988876 9999999999999999999998665432211 1234788999999
Q ss_pred CceEE-EEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEe
Q 016903 228 GVRSI-RVDGNDALAIYSAVHAAREMAIGEGRPILIEALT 266 (380)
Q Consensus 228 G~~~~-~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t 266 (380)
|++.+ +++-.|+.++.+++++|++ .+||.+|++.+
T Consensus 171 g~~yVA~~~~~~~~~~~~~i~~A~~----~~Gps~I~~~s 206 (300)
T PRK11864 171 KVPYVATASIAYPEDFIRKLKKAKE----IRGFKFIHLLA 206 (300)
T ss_pred CCCEEEEEeCCCHHHHHHHHHHHHh----CCCCEEEEEeC
Confidence 99765 6888999999999999997 48999999875
No 46
>cd02004 TPP_BZL_OCoD_HPCL Thiamine pyrophosphate (TPP) family, BZL_OCoD_HPCL subfamily, TPP-binding module; composed of proteins similar to benzaldehyde lyase (BZL), oxalyl-CoA decarboxylase (OCoD) and 2-hydroxyphytanoyl-CoA lyase (2-HPCL). Pseudomonas fluorescens biovar I BZL cleaves the acyloin linkage of benzoin producing 2 molecules of benzaldehyde and enabling the Pseudomonas to grow on benzoin as the sole carbon and energy source. OCoD has a role in the detoxification of oxalate, catalyzing the decarboxylation of oxalyl-CoA to formate. 2-HPCL is a peroxisomal enzyme which plays a role in the alpha-oxidation of 3-methyl-branched fatty acids, catalyzing the cleavage of 2-hydroxy-3-methylacyl-CoA into formyl-CoA and a 2-methyl-branched fatty aldehyde. All these enzymes depend on Mg2+ and TPP for activity.
Probab=99.77 E-value=2.8e-18 Score=153.29 Aligned_cols=114 Identities=22% Similarity=0.273 Sum_probs=93.4
Q ss_pred cCcccccchHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEc-CCcccccccccc-----
Q 016903 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRN-NGWAISTPISDQ----- 214 (380)
Q Consensus 141 ~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~N-N~~~~~~~~~~~----- 214 (380)
..|+||.++|.|+|+++|. ++++|+|++|||++++. .++|++|++++||+++||.| |+|++.......
T Consensus 46 ~~g~mG~~lp~AiGa~la~----~~~~vv~i~GDG~f~~~--~~el~ta~~~~lpv~ivv~NN~~~~~~~~~~~~~~~~~ 119 (172)
T cd02004 46 TFGTLGVGLGYAIAAALAR----PDKRVVLVEGDGAFGFS--GMELETAVRYNLPIVVVVGNNGGWYQGLDGQQLSYGLG 119 (172)
T ss_pred CCCcccchHHHHHHHHHhC----CCCeEEEEEcchhhcCC--HHHHHHHHHcCCCEEEEEEECcccccchhhhhhhccCC
Confidence 3588999999999998874 67899999999999864 47799999999997776655 568776533221
Q ss_pred ------cCCcCHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEe
Q 016903 215 ------FRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALT 266 (380)
Q Consensus 215 ------~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t 266 (380)
....++.+++++||+++.+|+ +++++.++++++.+ .++|+|||+.+
T Consensus 120 ~~~~~~~~~~d~~~la~a~G~~~~~v~--~~~el~~al~~a~~----~~~p~liev~i 171 (172)
T cd02004 120 LPVTTLLPDTRYDLVAEAFGGKGELVT--TPEELKPALKRALA----SGKPALINVII 171 (172)
T ss_pred CceeccCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHH----cCCCEEEEEEc
Confidence 235689999999999999999 78898888888765 47999999976
No 47
>cd02013 TPP_Xsc_like Thiamine pyrophosphate (TPP) family, Xsc-like subfamily, TPP-binding module; composed of proteins similar to Alcaligenes defragrans sulfoacetaldehyde acetyltransferase (Xsc). Xsc plays a key role in the degradation of taurine, catalyzing the desulfonation of 2-sulfoacetaldehyde into sulfite and acetyl phosphate. This enzyme requires TPP and divalent metal ions for activity.
Probab=99.77 E-value=2.5e-18 Score=157.01 Aligned_cols=120 Identities=23% Similarity=0.280 Sum_probs=97.1
Q ss_pred cCcccccchHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEE-EcCCccccccccc------
Q 016903 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFIC-RNNGWAISTPISD------ 213 (380)
Q Consensus 141 ~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv-~NN~~~~~~~~~~------ 213 (380)
..|+||+++|.|+|+++|. ++++|||++|||+|++. ..+|.+|+++++|+++|| +|++|++......
T Consensus 51 ~~g~mG~~lpaaiGa~la~----p~r~vv~i~GDG~f~m~--~~eL~Ta~~~~lpvi~vV~NN~~yg~~~~~q~~~~~~~ 124 (196)
T cd02013 51 SFGNCGYALPAIIGAKAAA----PDRPVVAIAGDGAWGMS--MMEIMTAVRHKLPVTAVVFRNRQWGAEKKNQVDFYNNR 124 (196)
T ss_pred CCcccccHHHHHHHHHHhC----CCCcEEEEEcchHHhcc--HHHHHHHHHhCCCeEEEEEECchhHHHHHHHHHHcCCC
Confidence 3589999999999998874 68899999999999874 355999999999987777 5556776432111
Q ss_pred ----ccCCcCHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecC
Q 016903 214 ----QFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRV 269 (380)
Q Consensus 214 ----~~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t~R~ 269 (380)
.....|++++|++||+++++|+ ++.++.+++++|++.+|. ++|+|||+.+.+.
T Consensus 125 ~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~el~~al~~a~~~~~~-~~p~liev~v~~~ 181 (196)
T cd02013 125 FVGTELESESFAKIAEACGAKGITVD--KPEDVGPALQKAIAMMAE-GKTTVIEIVCDQE 181 (196)
T ss_pred cccccCCCCCHHHHHHHCCCEEEEEC--CHHHHHHHHHHHHhcCCC-CCeEEEEEEeCcc
Confidence 1234789999999999999999 899999999999875443 7899999999653
No 48
>cd00568 TPP_enzymes Thiamine pyrophosphate (TPP) enzyme family, TPP-binding module; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. These enzymes include, among others, the E1 components of the pyruvate, the acetoin and the branched chain alpha-keto acid dehydrogenase complexes.
Probab=99.77 E-value=3e-18 Score=151.52 Aligned_cols=116 Identities=30% Similarity=0.352 Sum_probs=95.2
Q ss_pred cccCcccccchHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcccccccc------
Q 016903 139 FTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPIS------ 212 (380)
Q Consensus 139 ~~~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~~~~~~~------ 212 (380)
....|+||+++|.|+|++++. ++++|+|++|||++++ .+++|++|.++++|+++||.||++...+...
T Consensus 42 ~~~~g~~G~~~~~a~Gaa~a~----~~~~vv~~~GDG~~~~--~~~~l~ta~~~~~~~~~iv~nN~~~~~~~~~~~~~~~ 115 (168)
T cd00568 42 STGFGAMGYGLPAAIGAALAA----PDRPVVCIAGDGGFMM--TGQELATAVRYGLPVIVVVFNNGGYGTIRMHQEAFYG 115 (168)
T ss_pred CCCchhhhhhHHHHHHHHHhC----CCCcEEEEEcCcHHhc--cHHHHHHHHHcCCCcEEEEEECCccHHHHHHHHHHcC
Confidence 445799999999999999986 4789999999999987 5689999999999999988888754443322
Q ss_pred -----cccCCcCHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEe
Q 016903 213 -----DQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALT 266 (380)
Q Consensus 213 -----~~~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t 266 (380)
......++.+++++||+++++|+ +++++.++++++. +.++|+|||++|
T Consensus 116 ~~~~~~~~~~~d~~~~a~~~G~~~~~v~--~~~~l~~a~~~a~----~~~~p~~i~v~~ 168 (168)
T cd00568 116 GRVSGTDLSNPDFAALAEAYGAKGVRVE--DPEDLEAALAEAL----AAGGPALIEVKT 168 (168)
T ss_pred CCcccccCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHH----hCCCCEEEEEEC
Confidence 22345689999999999999998 5788877777776 468999999975
No 49
>PLN02225 1-deoxy-D-xylulose-5-phosphate synthase
Probab=99.75 E-value=1.3e-17 Score=175.50 Aligned_cols=225 Identities=10% Similarity=0.036 Sum_probs=169.6
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCcccccccchhhHHHHHHHhcCC-CCcEEEc--ccccHHHHHH
Q 016903 27 DSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEA-QRQGRISFYLTTSGEEAINIASAAAIK-NDDFVVP--QYREPGVLLW 102 (380)
Q Consensus 27 ~~~~~~~~~e~l~~~y~~M~~~R~~e~~~~~~-~~~g~i~~~~~~~G~Ea~~~~~~~~l~-~~D~v~~--~yR~~~~~l~ 102 (380)
|.+.++++.++|..+-..+ |.+ .+... .+.| +.+.++.|---..+++...++ |.|.|+. .|....|-+.
T Consensus 85 P~dlk~L~~~eL~~La~Ei---R~~--li~~v~s~~G--GHl~snLGvVELTvALH~VFd~p~DkiiwDvgHQ~Y~HKiL 157 (701)
T PLN02225 85 PLQLKNLSVKELKLLADEI---RTE--LHSVLWKKTQ--KSMNPSFAAIELTLALHYVFRAPVDNILWDAVEQTYAHKVL 157 (701)
T ss_pred HHHHhhCCHHHHHHHHHHH---HHH--HHHHhhcccC--CCcCCCccHHHHHHHHHHHhCCCCCceeeccccccchhhHh
Confidence 4456778888887776665 544 22222 2333 456678898888899999997 8899887 7999999999
Q ss_pred cCCCHHHHHHHhhcCCCCCCCCCCCccccCCCC-CCccccCcccccchHHHHHHHHHhhhcCCCCeeEEEeCccccCcch
Q 016903 103 RGFSMQEFANQCFGNKADYGKGRQMPIHYGSNK-HNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGD 181 (380)
Q Consensus 103 ~G~~~~~~~~e~~g~~~~~~~G~~~~~H~~~~~-~~~~~~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~ 181 (380)
.|.. +-|.. +. -.|+++.+...+ ..-....|+-+.+++.|+|+|.|..+++.+..||+++|||++.-|+
T Consensus 158 TGR~--~~f~~-Rq-------~~GlsGf~~r~ES~~D~f~~GHssTSiSaalG~a~ardl~g~~~~vvaVIGDGaltgGm 227 (701)
T PLN02225 158 TRRW--SAIPS-RQ-------KNGISGVTSQLESEYDSFGTGHGCNSISAGLGLAVARDIKGKRDRVVAVIDNATITAGQ 227 (701)
T ss_pred cCCh--hhcCc-cc-------cCCcCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHhcCCCCcEEEEEcCcchhhhh
Confidence 9973 22321 21 233444444332 3345678999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCCEEEEEEcCCcccccc--------cccc--------------------------cC--CcCH-----
Q 016903 182 FHAALNFSAVTEAPVIFICRNNGWAISTP--------ISDQ--------------------------FR--SDGA----- 220 (380)
Q Consensus 182 ~~Eal~~A~~~~Lpvi~vv~NN~~~~~~~--------~~~~--------------------------~~--~~~~----- 220 (380)
.+||||-|+..+-|+|+|+++|+.+|+.+ .... .+ ...+
T Consensus 228 a~EaLN~~g~~~~~livILNDN~mSi~~n~~~~~~~~vG~ls~~l~~l~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (701)
T PLN02225 228 AYEAMSNAGYLDSNMIVILNDSRHSLHPNMEEGSKASISALSSIMSKIQSSKIFRKFRELAKAMTKRIGKGMYEWAAKVD 307 (701)
T ss_pred HHHHHhhhhccCCCEEEEEeCCCCCCCCCCCCccCCccchHHHHHHHHhccchHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 99999999999999999999999999877 1100 00 0000
Q ss_pred ----------H-HHHhhcCceEEE-EeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCC
Q 016903 221 ----------V-VKGRAYGVRSIR-VDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVG 270 (380)
Q Consensus 221 ----------~-~~a~a~G~~~~~-VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t~R~~ 270 (380)
. .+++.+|+.++- |||||++++..+++.+.+. ..++|+||.++|-+..
T Consensus 308 ~~~k~~~~~~~~~lFe~lG~~Y~GpvDGHdi~~Li~~l~~~k~~--~~~~PvlvHv~T~KGk 367 (701)
T PLN02225 308 EYARGMVGPTGSTLFEELGLYYIGPVDGHNIEDLVCVLREVSSL--DSMGPVLVHVITEENR 367 (701)
T ss_pred HHhhhccCCCccCcHHHcCCeEECccCCCCHHHHHHHHHHHHcC--CCCCCEEEEEEecCCC
Confidence 1 356888999886 9999999999999988764 1149999999998776
No 50
>cd02006 TPP_Gcl Thiamine pyrophosphate (TPP) family, Gcl subfamily, TPP-binding module; composed of proteins similar to Escherichia coli glyoxylate carboligase (Gcl). E. coli glyoxylate carboligase, plays a key role in glyoxylate metabolism where it catalyzes the condensation of two molecules of glyoxylate to give tartronic semialdehyde and carbon dioxide. This enzyme requires TPP, magnesium ion and FAD as cofactors.
Probab=99.75 E-value=8.1e-18 Score=154.32 Aligned_cols=121 Identities=22% Similarity=0.239 Sum_probs=97.1
Q ss_pred cCcccccchHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCC-ccccccccc------
Q 016903 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPISD------ 213 (380)
Q Consensus 141 ~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~-~~~~~~~~~------ 213 (380)
..|+||+++|.|+|+++|. ++++|||++|||+|++. ..+|.+|++++||+++||.||+ |++......
T Consensus 55 ~~GsmG~~lpaaiGa~la~----p~~~vv~i~GDG~f~m~--~~eL~Ta~~~~lpviivV~NN~~yg~~~~~q~~~~~~~ 128 (202)
T cd02006 55 QAGPLGWTVPAALGVAAAD----PDRQVVALSGDYDFQFM--IEELAVGAQHRIPYIHVLVNNAYLGLIRQAQRAFDMDY 128 (202)
T ss_pred CccchhhhhHHHHhHHhhC----CCCeEEEEEeChHhhcc--HHHHHHHHHhCCCeEEEEEeCchHHHHHHHHHHhcCcc
Confidence 3589999999999999884 68899999999999865 3669999999999888777665 665331110
Q ss_pred --------------ccCCcCHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecC
Q 016903 214 --------------QFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRV 269 (380)
Q Consensus 214 --------------~~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t~R~ 269 (380)
.....|+++.|++||+++.+|+ ++.++.+++++|++.+++.++|+|||+.+.+.
T Consensus 129 ~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~el~~al~~a~~~~~~~~~p~liev~i~~~ 196 (202)
T cd02006 129 QVNLAFENINSSELGGYGVDHVKVAEGLGCKAIRVT--KPEELAAAFEQAKKLMAEHRVPVVVEAILERV 196 (202)
T ss_pred ccccccccccccccCCCCCCHHHHHHHCCCEEEEEC--CHHHHHHHHHHHHHhcccCCCcEEEEEEeccc
Confidence 0013689999999999999998 89999999999986544457999999998543
No 51
>cd02002 TPP_BFDC Thiamine pyrophosphate (TPP) family, BFDC subfamily, TPP-binding module; composed of proteins similar to Pseudomonas putida benzoylformate decarboxylase (BFDC). P. putida BFDC plays a role in the mandelate pathway, catalyzing the conversion of benzoylformate to benzaldehyde and carbon dioxide. This enzyme is dependent on TPP and a divalent metal cation as cofactors.
Probab=99.74 E-value=7.9e-18 Score=150.99 Aligned_cols=112 Identities=29% Similarity=0.305 Sum_probs=93.4
Q ss_pred cccccchHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCC-ccccccccc--------
Q 016903 143 STIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPISD-------- 213 (380)
Q Consensus 143 g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~-~~~~~~~~~-------- 213 (380)
|+||+++|.|+|+++|. ++++|+|++|||+|+++. ++|.+|.++++|+++||.||+ |++......
T Consensus 49 g~mG~~lp~aiGaala~----~~~~vv~i~GDG~f~~~~--~el~ta~~~~~p~~~iV~nN~~~~~~~~~~~~~~~~~~~ 122 (178)
T cd02002 49 GGLGWGLPAAVGAALAN----PDRKVVAIIGDGSFMYTI--QALWTAARYGLPVTVVILNNRGYGALRSFLKRVGPEGPG 122 (178)
T ss_pred ccccchHHHHHHHHhcC----CCCeEEEEEcCchhhccH--HHHHHHHHhCCCeEEEEEcCccHHHHHHHHHHHcCCCcc
Confidence 89999999999999885 578999999999999874 679999999999988888775 887542211
Q ss_pred ---------ccCCcCHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEe
Q 016903 214 ---------QFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALT 266 (380)
Q Consensus 214 ---------~~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t 266 (380)
.....++.+++++||+++.+|+ ++.++.+++++|++ .++|+|||+.+
T Consensus 123 ~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~~----~~~p~vi~v~v 178 (178)
T cd02002 123 ENAPDGLDLLDPGIDFAAIAKAFGVEAERVE--TPEELDEALREALA----EGGPALIEVVV 178 (178)
T ss_pred cccccccccCCCCCCHHHHHHHcCCceEEeC--CHHHHHHHHHHHHh----CCCCEEEEEEC
Confidence 1134689999999999999999 58899888888875 57999999864
No 52
>cd02014 TPP_POX Thiamine pyrophosphate (TPP) family, Pyruvate oxidase (POX) subfamily, TPP-binding module; composed of proteins similar to Lactobacillus plantarum POX, which plays a key role in controlling acetate production under aerobic conditions. POX decarboxylates pyruvate, producing hydrogen peroxide and the energy-storage metabolite acetylphosphate. It requires FAD in addition to TPP and a divalent cation as cofactors.
Probab=99.72 E-value=4.9e-17 Score=146.19 Aligned_cols=116 Identities=24% Similarity=0.307 Sum_probs=93.4
Q ss_pred cCcccccchHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCC-cccccccc-------
Q 016903 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPIS------- 212 (380)
Q Consensus 141 ~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~-~~~~~~~~------- 212 (380)
..|+||+++|.|+|+++|. ++++|+|++|||+|+++ +.| |.+|.++++|+++||.||+ |++.....
T Consensus 49 ~~g~mG~~~~~aiGa~~a~----~~~~vv~i~GDG~f~~~-~~e-l~t~~~~~lp~~~iv~NN~~~~~~~~~~~~~~~~~ 122 (178)
T cd02014 49 LLATMGNGLPGAIAAKLAY----PDRQVIALSGDGGFAML-MGD-LITAVKYNLPVIVVVFNNSDLGFIKWEQEVMGQPE 122 (178)
T ss_pred CCchhhhHHHHHHHHHHhC----CCCcEEEEEcchHHHhh-HHH-HHHHHHhCCCcEEEEEECCchhHHHHHHHHhcCCc
Confidence 4589999999999998874 67899999999999887 555 8889999999888887775 77642111
Q ss_pred --cccCCcCHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeec
Q 016903 213 --DQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 268 (380)
Q Consensus 213 --~~~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t~R 268 (380)
......|+.+.+++||+++.+|+ +++++.++++++++ .++|+|||+.+.+
T Consensus 123 ~~~~~~~~d~~~la~a~G~~~~~v~--~~~el~~~l~~a~~----~~~p~liev~~~~ 174 (178)
T cd02014 123 FGVDLPNPDFAKIAEAMGIKGIRVE--DPDELEAALDEALA----ADGPVVIDVVTDP 174 (178)
T ss_pred eeccCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHh----CCCCEEEEEEeCC
Confidence 11234689999999999999998 78888888887765 5799999999854
No 53
>PRK06163 hypothetical protein; Provisional
Probab=99.72 E-value=1.2e-16 Score=146.51 Aligned_cols=130 Identities=20% Similarity=0.166 Sum_probs=100.6
Q ss_pred CcccccchHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHc-CCCEEEEEEcC-Cccccccccc-ccCCc
Q 016903 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVT-EAPVIFICRNN-GWAISTPISD-QFRSD 218 (380)
Q Consensus 142 ~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~-~Lpvi~vv~NN-~~~~~~~~~~-~~~~~ 218 (380)
.|+||+++|.|+|+++|. ++++|||++|||+|++. ..+|.+|+++ ++|+++||.|| +|++...... .....
T Consensus 56 ~GsMG~glpaAiGaalA~----p~r~Vv~i~GDG~f~m~--~~eL~Ta~~~~~lpi~ivV~NN~~yg~~~~~~~~~~~~~ 129 (202)
T PRK06163 56 LGSMGLAFPIALGVALAQ----PKRRVIALEGDGSLLMQ--LGALGTIAALAPKNLTIIVMDNGVYQITGGQPTLTSQTV 129 (202)
T ss_pred ecccccHHHHHHHHHHhC----CCCeEEEEEcchHHHHH--HHHHHHHHHhcCCCeEEEEEcCCchhhcCCccCCCCCCC
Confidence 689999999999999884 68899999999999754 4669999887 68988877776 5776432211 12346
Q ss_pred CHHHHHhhcCce-EEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCCCCCCCCCCCCCCChhhHH
Q 016903 219 GAVVKGRAYGVR-SIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDDSTKYRPVDEIE 288 (380)
Q Consensus 219 ~~~~~a~a~G~~-~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t~R~~gHs~~Dd~~~Yr~~~e~~ 288 (380)
|+.+.|++||++ +++|. ++.++..+++++++ .++|+|||+.+.+.. +-+..+|++.|.+
T Consensus 130 Df~~lA~a~G~~~~~~v~--~~~el~~al~~a~~----~~~p~lIeV~i~~~~-----~~~~~~~~~~~~~ 189 (202)
T PRK06163 130 DVVAIARGAGLENSHWAA--DEAHFEALVDQALS----GPGPSFIAVRIDDKP-----GVGTTERDPAQIR 189 (202)
T ss_pred CHHHHHHHCCCceEEEeC--CHHHHHHHHHHHHh----CCCCEEEEEEecCCC-----CCCCCCCCHHHHH
Confidence 899999999998 67888 99999999999875 489999999986432 2244457777654
No 54
>cd02008 TPP_IOR_alpha Thiamine pyrophosphate (TPP) family, IOR-alpha subfamily, TPP-binding module; composed of proteins similar to indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit. IOR catalyzes the oxidative decarboxylation of arylpyruvates, such as indolepyruvate or phenylpyruvate, which are generated by the transamination of aromatic amino acids, to the corresponding aryl acetyl-CoA.
Probab=99.71 E-value=1.2e-16 Score=143.66 Aligned_cols=117 Identities=21% Similarity=0.139 Sum_probs=92.3
Q ss_pred cCcccccchHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcC-Cccccccccc------
Q 016903 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN-GWAISTPISD------ 213 (380)
Q Consensus 141 ~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN-~~~~~~~~~~------ 213 (380)
..|+||+++|.|+|+++|. ++++||+++|||+|++.. +++|.+|+++++|+++||.|| .|++......
T Consensus 49 ~~g~mG~gl~~AiGa~la~----p~~~Vv~i~GDG~f~~~g-~~eL~ta~~~~l~i~vvV~nN~~~g~~~~~~~~~~~~~ 123 (178)
T cd02008 49 TCTCMGASIGVAIGMAKAS----EDKKVVAVIGDSTFFHSG-ILGLINAVYNKANITVVILDNRTTAMTGGQPHPGTGKT 123 (178)
T ss_pred ccccCccHHHHHhhHHhhC----CCCCEEEEecChHHhhcc-HHHHHHHHHcCCCEEEEEECCcceeccCCCCCCCCccc
Confidence 5799999999999999985 578999999999997532 578999999999977766555 4655432211
Q ss_pred ---ccCCcCHHHHHhhcCceEEEE-eCCCHHHHHHHHHHHHHHhhccCCcEEEEEEe
Q 016903 214 ---QFRSDGAVVKGRAYGVRSIRV-DGNDALAIYSAVHAAREMAIGEGRPILIEALT 266 (380)
Q Consensus 214 ---~~~~~~~~~~a~a~G~~~~~V-dG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t 266 (380)
.....|+.+++++||+++++| +++++.++.+++++|++ .++|+||+++.
T Consensus 124 ~~~~~~~~d~~~~a~a~G~~~~~v~~~~~l~~~~~al~~a~~----~~gp~lI~v~~ 176 (178)
T cd02008 124 LTEPTTVIDIEALVRAIGVKRVVVVDPYDLKAIREELKEALA----VPGVSVIIAKR 176 (178)
T ss_pred ccCCCCccCHHHHHHHCCCCEEEecCccCHHHHHHHHHHHHh----CCCCEEEEEeC
Confidence 112368999999999999998 67788877788888875 47999999864
No 55
>cd02015 TPP_AHAS Thiamine pyrophosphate (TPP) family, Acetohydroxyacid synthase (AHAS) subfamily, TPP-binding module; composed of proteins similar to the large catalytic subunit of AHAS. AHAS catalyzes the condensation of two molecules of pyruvate to give the acetohydroxyacid, 2-acetolactate. 2-Acetolactate is the precursor of the branched chain amino acids, valine and leucine. AHAS also catalyzes the condensation of pyruvate and 2-ketobutyrate to form 2-aceto-2-hydroxybutyrate in isoleucine biosynthesis. In addition to requiring TPP and a divalent metal ion as cofactors, AHAS requires FAD.
Probab=99.71 E-value=8.9e-17 Score=145.48 Aligned_cols=115 Identities=25% Similarity=0.335 Sum_probs=91.4
Q ss_pred CcccccchHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCC-ccccccc------c--
Q 016903 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPI------S-- 212 (380)
Q Consensus 142 ~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~-~~~~~~~------~-- 212 (380)
.|+||+++|.|+|+++|. ++++|||++|||+|++. ..+|.+|+++++|+++||.||+ |++.... .
T Consensus 49 ~g~mG~~lp~aiGa~la~----~~~~vv~i~GDG~f~~~--~~eL~ta~~~~lpi~ivV~nN~~~~~~~~~~~~~~~~~~ 122 (186)
T cd02015 49 LGTMGFGLPAAIGAKVAR----PDKTVICIDGDGSFQMN--IQELATAAQYNLPVKIVILNNGSLGMVRQWQELFYEGRY 122 (186)
T ss_pred ccchhchHHHHHHHHHhC----CCCeEEEEEcccHHhcc--HHHHHHHHHhCCCeEEEEEECCccHHHHHHHHHHcCCce
Confidence 589999999999998884 67899999999999864 4569999999999888777665 5543210 0
Q ss_pred ---cccCCcCHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeec
Q 016903 213 ---DQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 268 (380)
Q Consensus 213 ---~~~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t~R 268 (380)
......|+++.|++||+++.+|+ +.+++.+++++|.+ .++|+|||+.|.+
T Consensus 123 ~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~~----~~~p~liev~~~~ 175 (186)
T cd02015 123 SHTTLDSNPDFVKLAEAYGIKGLRVE--KPEELEAALKEALA----SDGPVLLDVLVDP 175 (186)
T ss_pred eeccCCCCCCHHHHHHHCCCceEEeC--CHHHHHHHHHHHHh----CCCCEEEEEEeCC
Confidence 11134689999999999999999 67888777777764 5899999999964
No 56
>cd02003 TPP_IolD Thiamine pyrophosphate (TPP) family, IolD subfamily, TPP-binding module; composed of proteins similar to Rhizobium leguminosarum bv. viciae IolD. IolD plays an important role in myo-inositol catabolism.
Probab=99.71 E-value=9.3e-17 Score=147.69 Aligned_cols=117 Identities=17% Similarity=0.202 Sum_probs=92.8
Q ss_pred cCcccccchHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEE-EcCCccccccccc------
Q 016903 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFIC-RNNGWAISTPISD------ 213 (380)
Q Consensus 141 ~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv-~NN~~~~~~~~~~------ 213 (380)
..|+||+++|.|+|+++|. ++++|||++|||+|+++. .+|.+|++++||+++|| +||+|++......
T Consensus 46 ~~gsmG~~lpaAiGa~la~----p~~~vv~i~GDGsf~m~~--~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~~~~ 119 (205)
T cd02003 46 GYSCMGYEIAAGLGAKLAK----PDREVYVLVGDGSYLMLH--SEIVTAVQEGLKIIIVLFDNHGFGCINNLQESTGSGS 119 (205)
T ss_pred CcchhhhHHHHHHHHHHhC----CCCeEEEEEccchhhccH--HHHHHHHHcCCCCEEEEEECCccHHHHHHHHHhcCcc
Confidence 4589999999999998874 688999999999998753 56999999999966655 5555765321100
Q ss_pred -----------------ccCCcCHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecC
Q 016903 214 -----------------QFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRV 269 (380)
Q Consensus 214 -----------------~~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t~R~ 269 (380)
.....|+.++|++||+++.+|+ +++++.+++++|++ .++|+|||+.+.+.
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~d~~~~A~a~G~~~~~v~--~~~el~~al~~a~~----~~gp~lIeV~v~~~ 186 (205)
T cd02003 120 FGTEFRDRDQESGQLDGALLPVDFAANARSLGARVEKVK--TIEELKAALAKAKA----SDRTTVIVIKTDPK 186 (205)
T ss_pred ccchhcccccccccccCCCCCCCHHHHHHhCCCEEEEEC--CHHHHHHHHHHHHh----CCCCEEEEEEeecc
Confidence 0124689999999999999997 99999999998874 58999999999653
No 57
>cd03372 TPP_ComE Thiamine pyrophosphate (TPP) family, ComE subfamily, TPP-binding module; composed of proteins similar to Methanococcus jannaschii sulfopyruvate decarboxylase beta subunit (ComE). M. jannaschii sulfopyruvate decarboxylase (ComDE) is a dodecamer of six alpha (D) subunits and six (E) beta subunits, which catalyzes the decarboxylation of sulfopyruvic acid to sulfoacetaldehyde in the coenzyme M pathway. ComDE requires TPP and divalent metal cation cofactors.
Probab=99.70 E-value=1.9e-16 Score=142.74 Aligned_cols=115 Identities=17% Similarity=0.152 Sum_probs=92.3
Q ss_pred CcccccchHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCC-CEEE-EEEcCCccccccccccc-CCc
Q 016903 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEA-PVIF-ICRNNGWAISTPISDQF-RSD 218 (380)
Q Consensus 142 ~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~L-pvi~-vv~NN~~~~~~~~~~~~-~~~ 218 (380)
.|+||+++|.|+|+++|.+ ++|||++|||+|+++ ..++.+|.++++ |+++ |++||+|++........ ...
T Consensus 41 ~g~mG~~lp~AiGaala~~-----~~vv~i~GDG~f~m~--~~el~ta~~~~~~~l~vvV~NN~~~~~~~~~~~~~~~~~ 113 (179)
T cd03372 41 LGSMGLASSIGLGLALAQP-----RKVIVIDGDGSLLMN--LGALATIAAEKPKNLIIVVLDNGAYGSTGNQPTHAGKKT 113 (179)
T ss_pred ccchhhHHHHHHHHHhcCC-----CcEEEEECCcHHHhC--HHHHHHHHHcCCCCEEEEEEcCccccccCCCCCCCCCCC
Confidence 7999999999999999853 789999999999754 356889999996 6655 45777788765432222 256
Q ss_pred CHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCC
Q 016903 219 GAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVG 270 (380)
Q Consensus 219 ~~~~~a~a~G~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t~R~~ 270 (380)
++.++|++||+++.+|+| +++++.+++++++ ++|+|||+.|.+..
T Consensus 114 d~~~lA~a~G~~~~~v~~-~~~el~~al~~a~------~gp~lIev~~~~~~ 158 (179)
T cd03372 114 DLEAVAKACGLDNVATVA-SEEAFEKAVEQAL------DGPSFIHVKIKPGN 158 (179)
T ss_pred CHHHHHHHcCCCeEEecC-CHHHHHHHHHHhc------CCCEEEEEEEcCCC
Confidence 899999999999999997 7888888887765 58999999996544
No 58
>cd02010 TPP_ALS Thiamine pyrophosphate (TPP) family, Acetolactate synthase (ALS) subfamily, TPP-binding module; composed of proteins similar to Klebsiella pneumoniae ALS, a catabolic enzyme required for butanediol fermentation. ALS catalyzes the conversion of 2 molecules of pyruvate to acetolactate and carbon dioxide. ALS does not contain FAD, and requires TPP and a divalent metal cation for activity.
Probab=99.70 E-value=1.1e-16 Score=143.92 Aligned_cols=116 Identities=20% Similarity=0.288 Sum_probs=93.9
Q ss_pred cCcccccchHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcC-Ccccccccc-------
Q 016903 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN-GWAISTPIS------- 212 (380)
Q Consensus 141 ~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN-~~~~~~~~~------- 212 (380)
..|+||+++|.|+|+++|. ++++|||++|||+|++. ..+|.+|+++++|+++||.|| +|++....+
T Consensus 46 ~~g~mG~~lp~aiGa~la~----~~~~vv~i~GDG~f~m~--~~eL~ta~~~~l~vi~vV~NN~~~g~~~~~~~~~~~~~ 119 (177)
T cd02010 46 GLATMGVALPGAIGAKLVY----PDRKVVAVSGDGGFMMN--SQELETAVRLKIPLVVLIWNDNGYGLIKWKQEKEYGRD 119 (177)
T ss_pred CChhhhhHHHHHHHHHHhC----CCCcEEEEEcchHHHhH--HHHHHHHHHHCCCeEEEEEECCcchHHHHHHHHhcCCc
Confidence 4589999999999999884 68899999999999754 466999999999977766555 577643111
Q ss_pred --cccCCcCHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeec
Q 016903 213 --DQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 268 (380)
Q Consensus 213 --~~~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t~R 268 (380)
......|+++.|++||+++++|+ +++++.++++++++ .++|+|||+.+.+
T Consensus 120 ~~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~~----~~~p~liev~~~~ 171 (177)
T cd02010 120 SGVDFGNPDFVKYAESFGAKGYRIE--SADDLLPVLERALA----ADGVHVIDCPVDY 171 (177)
T ss_pred ccCcCCCCCHHHHHHHCCCEEEEEC--CHHHHHHHHHHHHh----CCCCEEEEEEecc
Confidence 11134689999999999999998 89999999999876 4899999999854
No 59
>cd02001 TPP_ComE_PpyrDC Thiamine pyrophosphate (TPP) family, ComE and PpyrDC subfamily, TPP-binding module; composed of proteins similar to sulfopyruvate decarboxylase beta subunit (ComE) and phosphonopyruvate decarboxylase (Ppyr decarboxylase). Methanococcus jannaschii sulfopyruvate decarboxylase (ComDE) is a dodecamer of six alpha (D) subunits and six (E) beta subunits which, catalyzes the decarboxylation of sulfopyruvic acid to sulfoacetaldehyde in the coenzyme M pathway. Ppyr decarboxylase is a homotrimeric enzyme which functions in the biosynthesis of C-P compounds such as bialaphos tripeptide in Streptomyces hygroscopicus. Ppyr decarboxylase and ComDE require TPP and divalent metal cation cofactors.
Probab=99.70 E-value=9.7e-17 Score=141.60 Aligned_cols=113 Identities=13% Similarity=0.052 Sum_probs=91.9
Q ss_pred CcccccchHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHc-CCCEEEEEE-cCCcccccccccccCCcC
Q 016903 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVT-EAPVIFICR-NNGWAISTPISDQFRSDG 219 (380)
Q Consensus 142 ~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~-~Lpvi~vv~-NN~~~~~~~~~~~~~~~~ 219 (380)
.|+||.++|.|+|+++|. +++|||++|||+|++. ..+|.+++++ ++|+++||. |+.|++...........|
T Consensus 41 ~gsmG~~lp~AiGa~~a~-----~~~Vv~i~GDG~f~m~--~~el~t~~~~~~~~i~~vV~nN~~~g~~~~~~~~~~~~d 113 (157)
T cd02001 41 LGSMGLAGSIGLGLALGL-----SRKVIVVDGDGSLLMN--PGVLLTAGEFTPLNLILVVLDNRAYGSTGGQPTPSSNVN 113 (157)
T ss_pred ecchhhHHHHHHHHHhcC-----CCcEEEEECchHHHhc--ccHHHHHHHhcCCCEEEEEEeCccccccCCcCCCCCCCC
Confidence 799999999999999985 2789999999999754 2558999998 599877775 555776543222223579
Q ss_pred HHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEee
Q 016903 220 AVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTY 267 (380)
Q Consensus 220 ~~~~a~a~G~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t~ 267 (380)
+.++|++||+++++|+ +++++.++++++++ .++|++|++.+.
T Consensus 114 ~~~lA~a~G~~~~~v~--~~~el~~al~~a~~----~~gp~vi~v~i~ 155 (157)
T cd02001 114 LEAWAAACGYLVLSAP--LLGGLGSEFAGLLA----TTGPTLLHAPIA 155 (157)
T ss_pred HHHHHHHCCCceEEcC--CHHHHHHHHHHHHh----CCCCEEEEEEec
Confidence 9999999999999997 89999999999886 479999999884
No 60
>TIGR03846 sulfopy_beta sulfopyruvate decarboxylase, beta subunit. Nearly every member of this protein family is the beta subunit, or else the C-terminal region, of sulfopyruvate decarboxylase, in an archaeal species capable of coenzyme M biosynthesis. However, the enzyme also occurs in Roseovarius nubinhibens ISM in a degradative pathway, where the resulting sulfoacetaldehyde is desulfonated to acetyl phosphate, then converted to acetyl-CoA (see PubMed:19581363).
Probab=99.69 E-value=1.5e-16 Score=143.65 Aligned_cols=113 Identities=19% Similarity=0.236 Sum_probs=91.0
Q ss_pred CcccccchHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCC-CEEEEEEcCC-ccccccccccc-CCc
Q 016903 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEA-PVIFICRNNG-WAISTPISDQF-RSD 218 (380)
Q Consensus 142 ~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~L-pvi~vv~NN~-~~~~~~~~~~~-~~~ 218 (380)
.|+||.++|.|+|+++|. +++|||++|||+|+++. ++|.+|+++++ |+++||.||+ |++...+.... ...
T Consensus 41 ~gsmG~~lpaAiGa~la~-----~~~Vv~i~GDG~f~m~~--~el~ta~~~~~~pv~~vV~NN~~yg~~~~q~~~~~~~~ 113 (181)
T TIGR03846 41 LGSMGLASSIGLGLALAT-----DRTVIVIDGDGSLLMNL--GVLPTIAAESPKNLILVILDNGAYGSTGNQPTPASRRT 113 (181)
T ss_pred ccccccHHHHHHHHHHcC-----CCcEEEEEcchHHHhhh--hHHHHHHHhCCCCeEEEEEeCCccccccCcCCCCCCCC
Confidence 789999999999999884 67899999999998653 67999999995 9888886665 77654221111 256
Q ss_pred CHHHHHhhcCceEEE-EeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeec
Q 016903 219 GAVVKGRAYGVRSIR-VDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 268 (380)
Q Consensus 219 ~~~~~a~a~G~~~~~-VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t~R 268 (380)
|+++.|++||+++.+ |+ ++.++.++++ +++ .++|+||++.+.+
T Consensus 114 d~~~lA~a~G~~~~~~v~--~~~~l~~al~-a~~----~~~p~li~v~~~~ 157 (181)
T TIGR03846 114 DLELVAKAAGIRNVEKVA--DEEELRDALK-ALA----MKGPTFIHVKVKP 157 (181)
T ss_pred CHHHHHHHCCCCeEEEeC--CHHHHHHHHH-HHc----CCCCEEEEEEeCC
Confidence 899999999999998 76 8899988885 553 5799999999854
No 61
>cd03371 TPP_PpyrDC Thiamine pyrophosphate (TPP) family, PpyrDC subfamily, TPP-binding module; composed of proteins similar to phosphonopyruvate decarboxylase (PpyrDC) proteins. PpyrDC is a homotrimeric enzyme which functions in the biosynthesis of C-P compounds such as bialaphos tripeptide in Streptomyces hygroscopicus. These proteins require TPP and divalent metal cation cofactors.
Probab=99.69 E-value=4.5e-16 Score=141.33 Aligned_cols=118 Identities=20% Similarity=0.137 Sum_probs=93.6
Q ss_pred cCcccccchHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCC-CEEEEEEcCC-cccccccccccCCc
Q 016903 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEA-PVIFICRNNG-WAISTPISDQFRSD 218 (380)
Q Consensus 141 ~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~L-pvi~vv~NN~-~~~~~~~~~~~~~~ 218 (380)
.+|+||+++|.|+|+++|. +++.|||++|||+|++ ..++|.+++++++ |+++||.||+ |++...........
T Consensus 46 ~~g~mG~~lpaAiGaala~----p~~~Vv~i~GDG~f~m--~~~eL~ta~~~~l~~i~ivV~NN~~yg~~~~~~~~~~~~ 119 (188)
T cd03371 46 TVGSMGHASQIALGIALAR----PDRKVVCIDGDGAALM--HMGGLATIGGLAPANLIHIVLNNGAHDSVGGQPTVSFDV 119 (188)
T ss_pred ecCccccHHHHHHHHHHhC----CCCcEEEEeCCcHHHh--hccHHHHHHHcCCCCcEEEEEeCchhhccCCcCCCCCCC
Confidence 3499999999999999885 6789999999999975 3467999999997 6666666554 66543222222346
Q ss_pred CHHHHHhhcCceE-EEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCC
Q 016903 219 GAVVKGRAYGVRS-IRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVG 270 (380)
Q Consensus 219 ~~~~~a~a~G~~~-~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t~R~~ 270 (380)
++++.|++||+++ .+|+ ++.++.++++++++ .++|+|||+.+-+..
T Consensus 120 d~~~~A~a~G~~~~~~v~--~~~el~~al~~a~~----~~~p~lIev~~~~~~ 166 (188)
T cd03371 120 SLPAIAKACGYRAVYEVP--SLEELVAALAKALA----ADGPAFIEVKVRPGS 166 (188)
T ss_pred CHHHHHHHcCCceEEecC--CHHHHHHHHHHHHh----CCCCEEEEEEecCCC
Confidence 8999999999997 5788 89999999988875 479999999996654
No 62
>cd02005 TPP_PDC_IPDC Thiamine pyrophosphate (TPP) family, PDC_IPDC subfamily, TPP-binding module; composed of proteins similar to pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC). PDC, a key enzyme in alcoholic fermentation, catalyzes the conversion of pyruvate to acetaldehyde and CO2. It is able to utilize other 2-oxo acids as substrates. In plants and various plant-associated bacteria, IPDC plays a role in the indole-3-pyruvic acid (IPA) pathway, a tryptophan-dependent biosynthetic route to indole-3-acetaldehyde (IAA). IPDC catalyzes the decarboxylation of IPA to IAA. Both PDC and IPDC depend on TPP and Mg2+ as cofactors.
Probab=99.68 E-value=3.1e-16 Score=141.77 Aligned_cols=117 Identities=23% Similarity=0.269 Sum_probs=92.7
Q ss_pred cCcccccchHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCE-EEEEEcCCccccccccc------
Q 016903 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPV-IFICRNNGWAISTPISD------ 213 (380)
Q Consensus 141 ~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpv-i~vv~NN~~~~~~~~~~------ 213 (380)
..|+||+++|.|+|+++|. ++++|+|++|||+|++. ++| |.+|+++++|+ ++|++||+|++......
T Consensus 48 ~~g~mG~~l~~aiGaala~----~~~~vv~i~GDG~f~~~-~~e-l~ta~~~~~p~~ivV~nN~~~~~~~~~~~~~~~~~ 121 (183)
T cd02005 48 LWGSIGYSVPAALGAALAA----PDRRVILLVGDGSFQMT-VQE-LSTMIRYGLNPIIFLINNDGYTIERAIHGPEASYN 121 (183)
T ss_pred chhhHhhhHHHHHHHHHhC----CCCeEEEEECCchhhcc-HHH-HHHHHHhCCCCEEEEEECCCcEEEEEeccCCcCcc
Confidence 4589999999999999885 57899999999999764 566 88999999985 45556667876432111
Q ss_pred ccCCcCHHHHHhhcC----ceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeec
Q 016903 214 QFRSDGAVVKGRAYG----VRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 268 (380)
Q Consensus 214 ~~~~~~~~~~a~a~G----~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t~R 268 (380)
.....|+.+.|++|| +++++|+ ++.++.++++++++ ..++|+|||+.+.|
T Consensus 122 ~~~~~d~~~ia~a~G~~~~~~~~~v~--~~~el~~al~~a~~---~~~~p~liev~~~~ 175 (183)
T cd02005 122 DIANWNYTKLPEVFGGGGGGLSFRVK--TEGELDEALKDALF---NRDKLSLIEVILPK 175 (183)
T ss_pred cCCCCCHHHHHHHhCCCccccEEEec--CHHHHHHHHHHHHh---cCCCcEEEEEEcCc
Confidence 122468999999999 7898887 89999999998886 14799999999865
No 63
>PF02775 TPP_enzyme_C: Thiamine pyrophosphate enzyme, C-terminal TPP binding domain; InterPro: IPR011766 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the C-terminal TPP binding domain of TPP enzymes.; GO: 0003824 catalytic activity, 0030976 thiamine pyrophosphate binding; PDB: 2WVA_V 1ZPD_F 2WVG_B 2WVH_B 3OE1_D 2NXW_A 2Q5L_B 2Q5Q_B 2Q5J_A 2Q5O_A ....
Probab=99.66 E-value=4.3e-16 Score=136.48 Aligned_cols=114 Identities=28% Similarity=0.394 Sum_probs=92.4
Q ss_pred cCcccccchHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCC-cccccccc-------
Q 016903 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPIS------- 212 (380)
Q Consensus 141 ~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~-~~~~~~~~------- 212 (380)
..++||.++|.|+|+++| .++++|||++|||+|... ..+|.+|.++++|+++||.||+ |++.....
T Consensus 26 ~~g~mG~~~~~aiGa~~a----~p~~~vv~i~GDG~f~~~--~~el~ta~~~~~~v~~vv~nN~~~~~~~~~~~~~~~~~ 99 (153)
T PF02775_consen 26 GFGSMGYALPAAIGAALA----RPDRPVVAITGDGSFLMS--LQELATAVRYGLPVVIVVLNNGGYGMTGGQQTPFGGGR 99 (153)
T ss_dssp TTT-TTTHHHHHHHHHHH----STTSEEEEEEEHHHHHHH--GGGHHHHHHTTSSEEEEEEESSBSHHHHHHHHHTTSTC
T ss_pred CccccCCHHHhhhHHHhh----cCcceeEEecCCcceeec--cchhHHHhhccceEEEEEEeCCcceEeccccccCcCcc
Confidence 478999999999999997 478999999999999765 4569999999999888776665 55432211
Q ss_pred ---cc---cCCcCHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEE
Q 016903 213 ---DQ---FRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEA 264 (380)
Q Consensus 213 ---~~---~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~ 264 (380)
.. ....|+.+.+++||+++.+|+..|++++.+++++|++ .++|+|||+
T Consensus 100 ~~~~~~~~~~~~d~~~~a~a~G~~~~~v~~~~~~el~~al~~a~~----~~gp~vIeV 153 (153)
T PF02775_consen 100 FSGVDGKTFPNPDFAALAEAFGIKGARVTTPDPEELEEALREALE----SGGPAVIEV 153 (153)
T ss_dssp HHSTBTTTSTTCGHHHHHHHTTSEEEEESCHSHHHHHHHHHHHHH----SSSEEEEEE
T ss_pred cccccccccccCCHHHHHHHcCCcEEEEccCCHHHHHHHHHHHHh----CCCcEEEEc
Confidence 11 3457899999999999999996666999999999985 589999996
No 64
>PRK07524 hypothetical protein; Provisional
Probab=99.65 E-value=8.5e-16 Score=160.44 Aligned_cols=118 Identities=26% Similarity=0.308 Sum_probs=97.7
Q ss_pred CcccccchHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcC-Ccccccc---------c
Q 016903 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN-GWAISTP---------I 211 (380)
Q Consensus 142 ~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN-~~~~~~~---------~ 211 (380)
.|+||+++|.|+|+++|. ++++|||++|||+|++. . .+|.+|++++||+++||.|| +|++... .
T Consensus 406 ~g~mG~~lp~aiGa~lA~----p~~~vv~i~GDG~f~~~-~-~el~ta~~~~lpi~~vV~NN~~~g~i~~~~~~~~~~~~ 479 (535)
T PRK07524 406 YGTLGYGLPAAIGAALGA----PERPVVCLVGDGGLQFT-L-PELASAVEADLPLIVLLWNNDGYGEIRRYMVARDIEPV 479 (535)
T ss_pred cccccchHHHHHHHHHhC----CCCcEEEEEcchHHhhh-H-HHHHHHHHhCCCeEEEEEECCchHHHHHHHHHhcCCcc
Confidence 589999999999999884 78899999999999854 3 44999999999988877777 6764321 1
Q ss_pred ccccCCcCHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCCC
Q 016903 212 SDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGH 271 (380)
Q Consensus 212 ~~~~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t~R~~g 271 (380)
.......|+.+.|++||+++++|+ +++++.++++++++ .++|+|||+.++|+.+
T Consensus 480 ~~~~~~~d~~~~A~a~G~~~~~v~--~~~el~~al~~a~~----~~~p~liev~~~~~~~ 533 (535)
T PRK07524 480 GVDPYTPDFIALARAFGCAAERVA--DLEQLQAALRAAFA----RPGPTLIEVDQACWFA 533 (535)
T ss_pred ccCCCCCCHHHHHHHCCCcEEEeC--CHHHHHHHHHHHHh----CCCCEEEEEECCcccc
Confidence 111234689999999999999998 99999999988875 5899999999999875
No 65
>cd02009 TPP_SHCHC_synthase Thiamine pyrophosphate (TPP) family, SHCHC synthase subfamily, TPP-binding module; composed of proteins similar to Escherichia coli 2-succinyl-6-hydroxyl-2,4-cyclohexadiene-1-carboxylic acid (SHCHC) synthase (also called MenD). SHCHC synthase plays a key role in the menaquinone biosynthetic pathway, converting isochorismate and 2-oxoglutarate to SHCHC, pyruvate and carbon dioxide. The enzyme requires TPP and a divalent metal cation for activity.
Probab=99.64 E-value=8.9e-16 Score=137.73 Aligned_cols=112 Identities=24% Similarity=0.227 Sum_probs=89.8
Q ss_pred CcccccchHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCC-ccccccccc-------
Q 016903 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPISD------- 213 (380)
Q Consensus 142 ~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~-~~~~~~~~~------- 213 (380)
.+.||+++|.|+|+++|. +++|||++|||+|++. ..+|.+|.++++|+++||.||+ |++......
T Consensus 50 ~g~mG~~l~~aiGa~la~-----~~~Vv~i~GDGsf~m~--~~eL~ta~~~~l~v~ivVlNN~~~g~~~~~~~~~~~~~~ 122 (175)
T cd02009 50 ASGIDGTLSTALGIALAT-----DKPTVLLTGDLSFLHD--LNGLLLGKQEPLNLTIVVINNNGGGIFSLLPQASFEDEF 122 (175)
T ss_pred ccchhhHHHHHHHHHhcC-----CCCEEEEEehHHHHHh--HHHHHhccccCCCeEEEEEECCCCchheeccCCcccchh
Confidence 378999999999999884 6789999999999864 4669999999999777666665 664321110
Q ss_pred --cc---CCcCHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEe
Q 016903 214 --QF---RSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALT 266 (380)
Q Consensus 214 --~~---~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t 266 (380)
.. ...|+.+.|++||+++.+|+ +++++.++++++++ .++|+|||+.+
T Consensus 123 ~~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~el~~al~~a~~----~~~p~lIev~v 174 (175)
T cd02009 123 ERLFGTPQGLDFEHLAKAYGLEYRRVS--SLDELEQALESALA----QDGPHVIEVKT 174 (175)
T ss_pred hhhhcCCCCCCHHHHHHHcCCCeeeCC--CHHHHHHHHHHHHh----CCCCEEEEEeC
Confidence 11 24689999999999999998 89999999998875 48999999976
No 66
>PRK08327 acetolactate synthase catalytic subunit; Validated
Probab=99.64 E-value=1e-15 Score=161.02 Aligned_cols=119 Identities=23% Similarity=0.280 Sum_probs=99.8
Q ss_pred CcccccchHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcC-Cccccccc---------
Q 016903 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN-GWAISTPI--------- 211 (380)
Q Consensus 142 ~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN-~~~~~~~~--------- 211 (380)
.|+||+++|.|+|+++| .++++|||++|||+|+++...+++++|+++++|+++||.|| +|++....
T Consensus 429 ~gsmG~~lp~aiGa~la----~p~~~vv~i~GDG~f~~~~~e~~l~ta~~~~l~~~ivv~NN~~yg~~~~~~~~~~~~~~ 504 (569)
T PRK08327 429 AGGLGWALGAALGAKLA----TPDRLVIATVGDGSFIFGVPEAAHWVAERYGLPVLVVVFNNGGWLAVKEAVLEVYPEGY 504 (569)
T ss_pred CCCCCcchHHHHHHhhc----CCCCeEEEEecCcceeecCcHHHHHHHHHhCCCEEEEEEeCcccccchhHHhhhCcccc
Confidence 58999999999999887 47899999999999998765567999999999988888777 57653210
Q ss_pred --------cccc-CCcCHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEe
Q 016903 212 --------SDQF-RSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALT 266 (380)
Q Consensus 212 --------~~~~-~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t 266 (380)
.... +..|++++|++||+++.+|+ +++++.++++++++.+++++||+|||+.+
T Consensus 505 ~~~~~~~~~~~~~~~~d~~~la~a~G~~~~~v~--~~~el~~al~~a~~~~~~~~gp~liev~v 566 (569)
T PRK08327 505 AARKGTFPGTDFDPRPDFAKIAEAFGGYGERVE--DPEELKGALRRALAAVRKGRRSAVLDVIV 566 (569)
T ss_pred cccccccccccCCCCCCHHHHHHhCCCCceEeC--CHHHHHHHHHHHHHHHhcCCCcEEEEEEc
Confidence 0111 35689999999999999998 99999999999998777778999999987
No 67
>COG2609 AceE Pyruvate dehydrogenase complex, dehydrogenase (E1) component [Energy production and conversion]
Probab=99.62 E-value=1.2e-13 Score=141.87 Aligned_cols=269 Identities=17% Similarity=0.173 Sum_probs=179.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc-CCcccccccchhhH--HHHHHHhcCCCC------cEEEcc-cccHH---HHH
Q 016903 35 EGVAIKMYNDMVTLQTMDTIFYEAQRQ-GRISFYLTTSGEEA--INIASAAAIKND------DFVVPQ-YREPG---VLL 101 (380)
Q Consensus 35 ~e~l~~~y~~M~~~R~~e~~~~~~~~~-g~i~~~~~~~G~Ea--~~~~~~~~l~~~------D~v~~~-yR~~~---~~l 101 (380)
..+|.+-+|+.++=...-..+. ..+. -+++-++++.-.-| --|+....+++. |.|+-. |-..+ -.+
T Consensus 74 d~~lErrir~~irWna~a~vlR-askk~l~lGGH~aSfaSsatlyev~fnhffr~~~~~~ggDlV~~qgHaSPg~yAraf 152 (887)
T COG2609 74 DLELERRIRSLIRWNAHAMVLR-ASKKGLELGGHIASFASSATLYEVGFNHFFRAKSEKDGGDLVFFQGHASPGIYARAF 152 (887)
T ss_pred cHHHHHHHHHHHHHHHHHHHHH-ccCCCCCccchhhhhhhHHHHHHHHHHHHhcCcCCCCCCceEEEecCCCchHHHHHH
Confidence 3455555666555555522222 2222 23433333321111 123344456654 988863 54443 334
Q ss_pred HcCCCHHHHHHHhhcCCCCCCCCCCCccccCCCC-CCcc-ccCcccccchHHHHHHHHHhhhc-------CCCCeeEEEe
Q 016903 102 WRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNK-HNYF-TVSSTIATQLPHAVGAAYALKMD-------RKDACAVTYF 172 (380)
Q Consensus 102 ~~G~~~~~~~~e~~g~~~~~~~G~~~~~H~~~~~-~~~~-~~~g~lG~~lp~A~G~A~A~k~~-------~~~~~vv~~~ 172 (380)
..|...++-|..|+.-. .|.+++++|.... +.++ ..++|||-|...|+=.|+-.|+. .++++|+||+
T Consensus 153 LeGRlseeqLdnFRqev----~g~gl~SYPhp~lmpdfwqFpTvSmGLGp~~aiyqArf~kYL~~RGl~~~~~~~v~afL 228 (887)
T COG2609 153 LEGRLTEEQLDNFRQEV----DGKGLSSYPHPKLMPDFWQFPTVSMGLGPIQAIYQARFLKYLEARGLKDTSDQKVWAFL 228 (887)
T ss_pred HhccccHHHHHHHHHhc----cCCCCCCCCCCcCCccccccCcccccccHHHHHHHHHHHHHHHhcCCcCCCCCeEEEEe
Confidence 46877777777777643 3777887776543 3333 35799999999999999988863 4678999999
Q ss_pred CccccCcchHHHHHHHHHHcCC-CEEEEEEcCCcccccccccccC-CcCHHHHHhhcCceEEEE----------------
Q 016903 173 GDGGTSEGDFHAALNFSAVTEA-PVIFICRNNGWAISTPISDQFR-SDGAVVKGRAYGVRSIRV---------------- 234 (380)
Q Consensus 173 GDG~~~eG~~~Eal~~A~~~~L-pvi~vv~NN~~~~~~~~~~~~~-~~~~~~~a~a~G~~~~~V---------------- 234 (380)
|||++.|+...+++.+|++.+| |+||||+.|....++|+..... ...+...+++.||.+++|
T Consensus 229 GDgEmDEpes~gAi~~A~re~LdNlifVincNlQrLDgpVrgngkiiqelE~~FrgAGW~VikviWg~~wd~ll~kd~~g 308 (887)
T COG2609 229 GDGEMDEPESRGAITEAAREKLDNLIFVINCNLQRLDGPVRGNGKIIQELEGIFRGAGWNVIKVIWGRRWDELLAKDTGG 308 (887)
T ss_pred cCcccCCchhhHHHHHHHHhcCCceEEEEecchhhcCCcccCCchhHHHHHHHhccCCceEEEEEecccHHHHhcccCcc
Confidence 9999999999999999999999 9999999999999988765321 234667889999999965
Q ss_pred -----------------------------------------------------eCCCHHHHHHHHHHHHHHhhccCCcEE
Q 016903 235 -----------------------------------------------------DGNDALAIYSAVHAAREMAIGEGRPIL 261 (380)
Q Consensus 235 -----------------------------------------------------dG~D~~av~~a~~~a~~~ar~~~gP~l 261 (380)
-|||+..|++|+++|.+. .++|++
T Consensus 309 kL~~~m~e~~dgdyqt~kakdGayvRehff~~~Pe~~aLVa~~tD~diw~L~rGGHD~~ki~aA~~~A~~~---kg~Ptv 385 (887)
T COG2609 309 KLRQLMNETVDGDYQTFKAKDGAYVREHFFGRYPETAALVADMTDDDIWALNRGGHDPEKVYAAFKKAQEH---KGRPTV 385 (887)
T ss_pred hHHHHHHhcccchhhhhcccccHHHHHHHhccChHHHHHHHhccHHHHHHHhcCCCCHHHHHHHHHHHhcC---CCCceE
Confidence 489999999999999975 458999
Q ss_pred EEEEeecCCCCCCCCCCCCCCChhhHHHHHhcCChHHHHHHHHHHcCCCCHHHHHH
Q 016903 262 IEALTYRVGHHTTSDDSTKYRPVDEIEWWRTTQDPVTRFRKWIESNGWWNGDIESE 317 (380)
Q Consensus 262 Ie~~t~R~~gHs~~Dd~~~Yr~~~e~~~~~~~~DPi~~~~~~L~~~g~~t~~e~~~ 317 (380)
|.++|.+.+|--.+- +.-......+.+ ..|-|..||+++-= -++++|+++
T Consensus 386 ilA~TIKGyglg~~~--eg~n~aHq~kkm--~~~~l~~~Rdr~~i--pvsd~e~e~ 435 (887)
T COG2609 386 ILAKTIKGYGLGEAA--EGKNIAHQVKKM--TPDQLKEFRDRFGI--PVSDAELEE 435 (887)
T ss_pred EEEeeeccccCchhh--cccchhhhhhcC--CHHHHHHHHhhcCC--CCchhhhhc
Confidence 999999888643211 111122223222 24566677777621 256666665
No 68
>TIGR01504 glyox_carbo_lig glyoxylate carboligase. Glyoxylate carboligase, also called tartronate-semialdehyde synthase, releases CO2 while synthesizing a single molecule of tartronate semialdehyde from two molecules of glyoxylate. It is a thiamine pyrophosphate-dependent enzyme, closely related in sequence to the large subunit of acetolactate synthase. In the D-glycerate pathway, part of allantoin degradation in the Enterobacteriaceae, tartronate semialdehyde is converted to D-glycerate and then 3-phosphoglycerate, a product of glycolysis and entry point in the general metabolism.
Probab=99.61 E-value=1.7e-15 Score=159.87 Aligned_cols=119 Identities=21% Similarity=0.242 Sum_probs=95.4
Q ss_pred CcccccchHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCC-ccccccccc-------
Q 016903 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPISD------- 213 (380)
Q Consensus 142 ~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~-~~~~~~~~~------- 213 (380)
.|+||+++|.|+|+++|. ++++||+++|||+|++. ..+|.+|.+|+||+++||.||+ |++......
T Consensus 417 ~gsmG~glpaaiGa~lA~----pdr~Vv~i~GDG~f~m~--~~EL~Ta~r~~lpvv~iV~NN~~yg~i~~~q~~~~~~~~ 490 (588)
T TIGR01504 417 AGPLGWTIPAALGVCAAD----PKRNVVALSGDYDFQFM--IEELAVGAQHNIPYIHVLVNNAYLGLIRQAQRAFDMDYC 490 (588)
T ss_pred cccccchHhHHHhhhhhC----CCCcEEEEEcchHhhcc--HHHHHHHHHhCCCeEEEEEeCCchHHHHHHHHHhccccc
Confidence 588999999999999884 78899999999999875 3569999999999777666665 765321100
Q ss_pred ---cc----------CCcCHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeec
Q 016903 214 ---QF----------RSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 268 (380)
Q Consensus 214 ---~~----------~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t~R 268 (380)
.. ...||++.|++||+++.+|+ +++++.+++++|++.+++.++|+|||+.+.+
T Consensus 491 ~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~V~--~~~eL~~al~~a~~~~~~~~~p~lIeV~i~~ 556 (588)
T TIGR01504 491 VQLAFENINSSEVNGYGVDHVKVAEGLGCKAIRVF--KPEEIAPAFEQAKALMAEHRVPVVVEVILER 556 (588)
T ss_pred ceeeccccccccccCCCCCHHHHHHHCCCEEEEEC--CHHHHHHHHHHHHhhcccCCCcEEEEEEecc
Confidence 00 13689999999999999998 9999999999998644345899999999954
No 69
>cd03375 TPP_OGFOR Thiamine pyrophosphate (TPP family), 2-oxoglutarate ferredoxin oxidoreductase (OGFOR) subfamily, TPP-binding module; OGFOR catalyzes the oxidative decarboxylation of 2-oxo-acids, with ferredoxin acting as an electron acceptor. In the TCA cycle, OGFOR catalyzes the oxidative decarboxylation of 2-oxoglutarate to succinyl-CoA. In the reductive tricarboxylic acid cycle found in the anaerobic autotroph Hydrogenobacter thermophilus, OGFOR catalyzes the reductive carboxylation of succinyl-CoA to produce 2-oxoglutarate. Thauera aromatica OGFOR has been shown to provide reduced ferredoxin to benzoyl-CoA reductase, a key enzyme in the anaerobic metabolism of aromatic compounds. OGFOR is dependent on TPP and a divalent metal cation for activity.
Probab=99.61 E-value=5.2e-15 Score=134.90 Aligned_cols=115 Identities=17% Similarity=0.174 Sum_probs=88.8
Q ss_pred CcccccchHHHHHHHHHhhhcCCCCeeEEEeCcccc-CcchHHHHHHHHHHcCCCEEEEEEcCC-ccccccccc-c----
Q 016903 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGT-SEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPISD-Q---- 214 (380)
Q Consensus 142 ~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDG~~-~eG~~~Eal~~A~~~~Lpvi~vv~NN~-~~~~~~~~~-~---- 214 (380)
.++||.++|.|+|+++|. ++++||++.|||++ +.+ ..+|.+|.++++|+++||.||+ |++...... .
T Consensus 50 ~g~mG~glpaAiGa~la~----p~r~Vv~i~GDGs~f~m~--~~eL~ta~~~~lpv~iiVlnN~~yg~~~~~~~~~~~~~ 123 (193)
T cd03375 50 HTLHGRALAVATGVKLAN----PDLTVIVVSGDGDLAAIG--GNHFIHAARRNIDITVIVHNNQIYGLTKGQASPTTPEG 123 (193)
T ss_pred hhhhccHHHHHHHHHHhC----CCCeEEEEeccchHhhcc--HHHHHHHHHhCCCeEEEEEcCcccccCCCccCCCCCCC
Confidence 388999999999998874 78999999999994 544 3569999999999887776665 665432111 0
Q ss_pred -----------cCCcCHHHHHhhcCceEE-EEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEe
Q 016903 215 -----------FRSDGAVVKGRAYGVRSI-RVDGNDALAIYSAVHAAREMAIGEGRPILIEALT 266 (380)
Q Consensus 215 -----------~~~~~~~~~a~a~G~~~~-~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t 266 (380)
....|+.+.++++|++++ ++.-.++.++.+++++|++ .++|+|||+.+
T Consensus 124 ~~~~~~~~~~~~~~~d~~~iA~a~G~~~~~~~~v~~~~el~~al~~al~----~~gp~vIev~~ 183 (193)
T cd03375 124 FKTKTTPYGNIEEPFNPLALALAAGATFVARGFSGDIKQLKEIIKKAIQ----HKGFSFVEVLS 183 (193)
T ss_pred CcccCCCCCCCCCCCCHHHHHHHCCCCEEEEEecCCHHHHHHHHHHHHh----cCCCEEEEEEC
Confidence 113589999999999985 2233489999999999986 48999999975
No 70
>PRK08266 hypothetical protein; Provisional
Probab=99.61 E-value=3.9e-15 Score=155.69 Aligned_cols=118 Identities=27% Similarity=0.345 Sum_probs=96.2
Q ss_pred CcccccchHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcC-Ccccccccc--------
Q 016903 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN-GWAISTPIS-------- 212 (380)
Q Consensus 142 ~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN-~~~~~~~~~-------- 212 (380)
.|+||+++|.|+|++++ .++++|||++|||+|+++ .++|.+|.+++||+++||.|| +|++....+
T Consensus 401 ~GsmG~~lp~aiGa~la----~p~~~vv~v~GDG~f~~~--~~eL~ta~~~~lpv~ivv~NN~~y~~~~~~~~~~~~~~~ 474 (542)
T PRK08266 401 QGTLGYGFPTALGAKVA----NPDRPVVSITGDGGFMFG--VQELATAVQHNIGVVTVVFNNNAYGNVRRDQKRRFGGRV 474 (542)
T ss_pred CcccccHHHHHHHHHHh----CCCCcEEEEEcchhhhcc--HHHHHHHHHhCCCeEEEEEeCCcchHHHHHHHHhcCCCc
Confidence 58999999999999877 478899999999999986 477999999999988877766 587542111
Q ss_pred --cccCCcCHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCCC
Q 016903 213 --DQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGH 271 (380)
Q Consensus 213 --~~~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t~R~~g 271 (380)
......|+.++|++||+++.+|+ +++++.++++++++ .++|+|||+.|+|...
T Consensus 475 ~~~~~~~~d~~~la~a~G~~~~~v~--~~~el~~al~~a~~----~~~p~liev~i~~~~~ 529 (542)
T PRK08266 475 VASDLVNPDFVKLAESFGVAAFRVD--SPEELRAALEAALA----HGGPVLIEVPVPRGSE 529 (542)
T ss_pred ccCCCCCCCHHHHHHHcCCeEEEeC--CHHHHHHHHHHHHh----CCCcEEEEEEecCCCC
Confidence 01123689999999999999998 78899888888875 5789999999987654
No 71
>PRK07092 benzoylformate decarboxylase; Reviewed
Probab=99.61 E-value=5e-15 Score=154.48 Aligned_cols=113 Identities=29% Similarity=0.367 Sum_probs=93.4
Q ss_pred CcccccchHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCC-ccccccc---------
Q 016903 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPI--------- 211 (380)
Q Consensus 142 ~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~-~~~~~~~--------- 211 (380)
.|+||+++|.|+|+++|. ++++|+|++|||+|+++. ++|++|.+++||+++||.||+ |++....
T Consensus 406 ~g~mG~~lp~aiGa~la~----p~~~vv~i~GDG~f~~~~--~eL~ta~~~~lp~~~vv~NN~~~~~~~~~~~~~~~~~~ 479 (530)
T PRK07092 406 SGGLGYGLPAAVGVALAQ----PGRRVIGLIGDGSAMYSI--QALWSAAQLKLPVTFVILNNGRYGALRWFAPVFGVRDV 479 (530)
T ss_pred CCcccchHHHHHHHHHhC----CCCeEEEEEeCchHhhhH--HHHHHHHHhCCCcEEEEEeChHHHHHHHHHHhhCCCCC
Confidence 689999999999999884 678999999999999863 779999999999888887777 8764321
Q ss_pred -ccccCCcCHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEe
Q 016903 212 -SDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALT 266 (380)
Q Consensus 212 -~~~~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t 266 (380)
.......++.+++++||+++++|+ ++.++.++++++.+ .++|+|||+.|
T Consensus 480 ~~~~~~~~d~~~~a~~~G~~~~~v~--~~~~l~~al~~a~~----~~~p~liev~~ 529 (530)
T PRK07092 480 PGLDLPGLDFVALARGYGCEAVRVS--DAAELADALARALA----ADGPVLVEVEV 529 (530)
T ss_pred CCCCCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHh----CCCCEEEEEEc
Confidence 111235689999999999999998 78888887777764 68999999986
No 72
>PRK06154 hypothetical protein; Provisional
Probab=99.60 E-value=5.1e-15 Score=155.56 Aligned_cols=118 Identities=24% Similarity=0.238 Sum_probs=95.0
Q ss_pred CcccccchHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCC-ccccccccc-------
Q 016903 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPISD------- 213 (380)
Q Consensus 142 ~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~-~~~~~~~~~------- 213 (380)
.|+||+++|.|+|+++|. ++++|||++|||+|++. ..+|.+|++++||+++||.||+ |++......
T Consensus 430 ~gsmG~glpaaiGa~la~----p~r~Vv~i~GDG~f~m~--~~EL~Ta~r~~lpi~~vV~NN~~yg~~~~~~~~~~~~~~ 503 (565)
T PRK06154 430 TTQLGYGLGLAMGAKLAR----PDALVINLWGDAAFGMT--GMDFETAVRERIPILTILLNNFSMGGYDKVMPVSTTKYR 503 (565)
T ss_pred CcccccHHHHHHHHHHhC----CCCcEEEEEcchHHhcc--HHHHHHHHHhCCCeEEEEEECCccceeehhhhhhcCccc
Confidence 589999999999999884 68899999999999865 3669999999999888777665 664321110
Q ss_pred -ccCCcCHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeec
Q 016903 214 -QFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 268 (380)
Q Consensus 214 -~~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t~R 268 (380)
.....||+++|++||+++.+|+ +++++.+++++|++..+ .++|+|||+.+.+
T Consensus 504 ~~~~~~df~~lA~a~G~~g~~V~--~~~el~~al~~a~~~~~-~~~p~lIev~v~~ 556 (565)
T PRK06154 504 ATDISGDYAAIARALGGYGERVE--DPEMLVPALLRALRKVK-EGTPALLEVITSE 556 (565)
T ss_pred ccCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHhhcc-CCCeEEEEEEeCh
Confidence 1113589999999999999999 99999999999986432 3689999999844
No 73
>PRK12474 hypothetical protein; Provisional
Probab=99.60 E-value=3.8e-15 Score=154.98 Aligned_cols=113 Identities=28% Similarity=0.232 Sum_probs=91.7
Q ss_pred CcccccchHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCC-ccccccc---------
Q 016903 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPI--------- 211 (380)
Q Consensus 142 ~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~-~~~~~~~--------- 211 (380)
.|+||+++|.|+|+++|. ++++|||++|||+|++. ..+|.+|.+++||+++||.||+ |++....
T Consensus 388 ~gsmG~glpaAiGa~lA~----p~r~vv~i~GDG~f~m~--~qEL~Ta~r~~lpv~iiV~NN~~y~~i~~~~~~~~~~~~ 461 (518)
T PRK12474 388 GGSIGQGLPLAAGAAVAA----PDRKVVCPQGDGGAAYT--MQALWTMARENLDVTVVIFANRSYAILNGELQRVGAQGA 461 (518)
T ss_pred CCccCccHHHHHHHHHHC----CCCcEEEEEcCchhcch--HHHHHHHHHHCCCcEEEEEcCCcchHHHHHHHhhcCCCC
Confidence 599999999999999985 78899999999999864 3669999999999777776665 7653211
Q ss_pred c------c--ccCCcCHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEe
Q 016903 212 S------D--QFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALT 266 (380)
Q Consensus 212 ~------~--~~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t 266 (380)
. . ..+..||+++|++||+++.+|+ +++++.+++++|++ .++|+|||+.+
T Consensus 462 ~~~~~~~~~~~~~~~d~~~lA~a~G~~~~rv~--~~~eL~~al~~a~~----~~~p~liev~~ 518 (518)
T PRK12474 462 GRNALSMLDLHNPELNWMKIAEGLGVEASRAT--TAEEFSAQYAAAMA----QRGPRLIEAMI 518 (518)
T ss_pred CccccccccCCCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHc----CCCCEEEEEEC
Confidence 0 0 0112589999999999999999 89999999998875 48999999864
No 74
>COG0028 IlvB Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=99.60 E-value=4.6e-15 Score=154.77 Aligned_cols=118 Identities=27% Similarity=0.365 Sum_probs=97.2
Q ss_pred ccCcccccchHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCC-cccccccccccC--
Q 016903 140 TVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPISDQFR-- 216 (380)
Q Consensus 140 ~~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~-~~~~~~~~~~~~-- 216 (380)
+..|+||.++|.|+|++++. +++.|||++|||+|++. .++|.+|.++++|+++||.||+ |++....+....
T Consensus 405 ~~~GtMG~glPaAIGAkla~----P~r~Vv~i~GDG~F~m~--~qEL~Ta~r~~lpv~ivv~nN~~~g~v~~~q~~~~~~ 478 (550)
T COG0028 405 GGLGTMGFGLPAAIGAKLAA----PDRKVVAIAGDGGFMMN--GQELETAVRYGLPVKIVVLNNGGYGMVRQWQELFYGG 478 (550)
T ss_pred CCCccccchHHHHHHHHhhC----CCCcEEEEEcccHHhcc--HHHHHHHHHhCCCEEEEEEECCccccchHHHHHhcCC
Confidence 34689999999999998874 78999999999999864 5679999999999999888776 655433222111
Q ss_pred -------CcC-HHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecC
Q 016903 217 -------SDG-AVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRV 269 (380)
Q Consensus 217 -------~~~-~~~~a~a~G~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t~R~ 269 (380)
... |.+.|++||+++.+|+ +++++.+++++|++ .++|+||++.+.+-
T Consensus 479 ~~~~~~~~~~~f~klAea~G~~g~~v~--~~~el~~al~~al~----~~~p~lidv~id~~ 533 (550)
T COG0028 479 RYSGTDLGNPDFVKLAEAYGAKGIRVE--TPEELEEALEEALA----SDGPVLIDVVVDPE 533 (550)
T ss_pred CcceeecCCccHHHHHHHcCCeeEEeC--CHHHHHHHHHHHHh----CCCCEEEEEEecCc
Confidence 122 9999999999999999 99999999999987 58999999999765
No 75
>PRK06725 acetolactate synthase 3 catalytic subunit; Validated
Probab=99.60 E-value=5.5e-15 Score=155.46 Aligned_cols=115 Identities=20% Similarity=0.268 Sum_probs=93.5
Q ss_pred CcccccchHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCC-cccccccc--------
Q 016903 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPIS-------- 212 (380)
Q Consensus 142 ~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~-~~~~~~~~-------- 212 (380)
.|+||+++|.|+|+++|. ++++|||++|||+|++. . .+|.+|.+++||+++||.||+ |++.....
T Consensus 421 ~gsmG~~lp~aiGa~lA~----p~~~vv~i~GDG~f~~~-~-~el~Ta~~~~lpi~~vV~NN~~~~~~~~~q~~~~~~~~ 494 (570)
T PRK06725 421 LGTMGFGFPAAIGAQLAK----EEELVICIAGDASFQMN-I-QELQTIAENNIPVKVFIINNKFLGMVRQWQEMFYENRL 494 (570)
T ss_pred cccccchhhHHHhhHhhc----CCCeEEEEEecchhhcc-H-HHHHHHHHhCCCeEEEEEECCccHHHHHHHHHhcCCcc
Confidence 489999999999998884 68899999999999754 3 559999999999888888776 55432110
Q ss_pred --cccCCcCHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeec
Q 016903 213 --DQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 268 (380)
Q Consensus 213 --~~~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t~R 268 (380)
......|+++++++||+++.+|+ +++++.++++++++ .++|+|||+.+.+
T Consensus 495 ~~~~~~~~d~~~~a~a~G~~~~~v~--~~~~l~~al~~a~~----~~~p~liev~id~ 546 (570)
T PRK06725 495 SESKIGSPDFVKVAEAYGVKGLRAT--NSTEAKQVMLEAFA----HEGPVVVDFCVEE 546 (570)
T ss_pred ccCcCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHh----CCCCEEEEEEeCC
Confidence 11234689999999999999997 89999888888875 5899999999964
No 76
>cd03376 TPP_PFOR_porB_like Thiamine pyrophosphate (TPP family), PFOR porB-like subfamily, TPP-binding module; composed of proteins similar to the beta subunit (porB) of the Helicobacter pylori four-subunit pyruvate ferredoxin oxidoreductase (PFOR), which are also found in archaea and some hyperthermophilic bacteria. PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. The 36-kDa porB subunit contains the binding sites for the cofactors, TPP and a divalent metal cation, which are required for activity.
Probab=99.59 E-value=7.6e-15 Score=137.76 Aligned_cols=118 Identities=22% Similarity=0.278 Sum_probs=91.6
Q ss_pred cccCcccccchHHHHHHHHHhhhcCCCCeeEEEeCcccc-CcchHHHHHHHHHHcCCCEEEEEEcCC-ccccccccc---
Q 016903 139 FTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGT-SEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPISD--- 213 (380)
Q Consensus 139 ~~~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDG~~-~eG~~~Eal~~A~~~~Lpvi~vv~NN~-~~~~~~~~~--- 213 (380)
+...++||.++|.|+|++++ .++++|||++|||++ +.+ ..+|.+|+++++|+++||.||+ |++...+..
T Consensus 58 ~~~~gsmG~GlpaAiGa~~a----~p~r~VV~i~GDG~~~~m~--~~eL~ta~~~~~pv~~vVlNN~~yg~tg~q~~~~~ 131 (235)
T cd03376 58 FENAAAVASGIEAALKALGR----GKDITVVAFAGDGGTADIG--FQALSGAAERGHDILYICYDNEAYMNTGIQRSGST 131 (235)
T ss_pred hcCHHHHHHHHHHHHHHhcc----CCCCeEEEEEcCchHHhhH--HHHHHHHHHcCCCeEEEEECCcccccCCCCCCCCC
Confidence 33457999999999998655 478899999999995 554 4669999999999999888886 563211110
Q ss_pred ------------------ccCCcCHHHHHhhcCceEEE-EeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEe
Q 016903 214 ------------------QFRSDGAVVKGRAYGVRSIR-VDGNDALAIYSAVHAAREMAIGEGRPILIEALT 266 (380)
Q Consensus 214 ------------------~~~~~~~~~~a~a~G~~~~~-VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t 266 (380)
.....|+.++|+++|++++. +...++.++.+++++|++ .++|+|||+.+
T Consensus 132 ~~~~~~~~~~~g~~~~~~~~~~~d~~~iA~a~G~~~~~~~~v~~~~el~~al~~a~~----~~gP~lIev~~ 199 (235)
T cd03376 132 PYGAWTTTTPVGKVSFGKKQPKKDLPLIMAAHNIPYVATASVAYPEDLYKKVKKALS----IEGPAYIHILS 199 (235)
T ss_pred CCCCEeecCCCCccccccccccCCHHHHHHHcCCcEEEEEcCCCHHHHHHHHHHHHh----CCCCEEEEEEC
Confidence 11336899999999999874 555699999999999886 47999999987
No 77
>PRK06546 pyruvate dehydrogenase; Provisional
Probab=99.58 E-value=1e-14 Score=153.62 Aligned_cols=116 Identities=25% Similarity=0.328 Sum_probs=94.7
Q ss_pred cCcccccchHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCC-ccccc--------cc
Q 016903 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAIST--------PI 211 (380)
Q Consensus 141 ~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~-~~~~~--------~~ 211 (380)
..|+||+++|.|+|+++|. ++++|||++|||+|+++ ..+|.+|++++||+++||.||+ |++.. +.
T Consensus 406 ~~gsmG~~~paAiGa~la~----p~~~vv~i~GDGsf~~~--~~el~Ta~~~~lpv~~vV~NN~~~g~i~~~q~~~~~~~ 479 (578)
T PRK06546 406 RHGSMANALPHAIGAQLAD----PGRQVISMSGDGGLSML--LGELLTVKLYDLPVKVVVFNNSTLGMVKLEMLVDGLPD 479 (578)
T ss_pred CcccccchhHHHHHHHHhC----CCCcEEEEEcCchHhhh--HHHHHHHHHhCCCeEEEEEECCccccHHHHHHhcCCCc
Confidence 3589999999999999984 67899999999999864 3459999999999888877775 56531 10
Q ss_pred c-cccCCcCHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeec
Q 016903 212 S-DQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 268 (380)
Q Consensus 212 ~-~~~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t~R 268 (380)
. ......|++++|++||+++.+|+ +++++.++++++++ .++|+|||+.+.+
T Consensus 480 ~~~~~~~~df~~lA~a~G~~~~~v~--~~~el~~al~~a~~----~~gp~lIev~~~~ 531 (578)
T PRK06546 480 FGTDHPPVDYAAIAAALGIHAVRVE--DPKDVRGALREAFA----HPGPALVDVVTDP 531 (578)
T ss_pred ccccCCCCCHHHHHHHCCCeeEEeC--CHHHHHHHHHHHHh----CCCCEEEEEEeCC
Confidence 0 11235689999999999999998 99999999998876 5899999999854
No 78
>PRK09107 acetolactate synthase 3 catalytic subunit; Validated
Probab=99.58 E-value=8.4e-15 Score=154.80 Aligned_cols=115 Identities=20% Similarity=0.243 Sum_probs=94.0
Q ss_pred CcccccchHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCC-ccccccc---------
Q 016903 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPI--------- 211 (380)
Q Consensus 142 ~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~-~~~~~~~--------- 211 (380)
.|+||+++|.|+|+++|. +++.|||++|||+|++. ..+|.+|++++||+++||.||+ |++....
T Consensus 429 ~gsmG~glpaaiGa~lA~----p~r~Vv~i~GDG~f~m~--~~EL~Ta~r~~lpvi~vV~NN~~y~~i~~~q~~~~~~~~ 502 (595)
T PRK09107 429 LGTMGYGLPAALGVQIAH----PDALVIDIAGDASIQMC--IQEMSTAVQYNLPVKIFILNNQYMGMVRQWQQLLHGNRL 502 (595)
T ss_pred chhhhhhHHHHHHHHHhC----CCCeEEEEEcCchhhcc--HHHHHHHHHhCCCeEEEEEeCCccHHHHHHHHHHhCCcc
Confidence 489999999999999884 78899999999999865 3569999999999888777775 6653211
Q ss_pred ccc--cCCcCHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeec
Q 016903 212 SDQ--FRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 268 (380)
Q Consensus 212 ~~~--~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t~R 268 (380)
... ....||++.|++||+++.+|+ +++++.+++++|.+ .++|+|||+.+.+
T Consensus 503 ~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~el~~al~~a~~----~~~p~lIeV~i~~ 555 (595)
T PRK09107 503 SHSYTEAMPDFVKLAEAYGAVGIRCE--KPGDLDDAIQEMID----VDKPVIFDCRVAN 555 (595)
T ss_pred ccccCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHh----CCCCEEEEEEecC
Confidence 111 123689999999999999998 99999999999886 4799999999965
No 79
>PRK11269 glyoxylate carboligase; Provisional
Probab=99.58 E-value=5.7e-15 Score=155.99 Aligned_cols=120 Identities=22% Similarity=0.230 Sum_probs=96.4
Q ss_pred cCcccccchHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCC-ccccccccc----c-
Q 016903 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPISD----Q- 214 (380)
Q Consensus 141 ~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~-~~~~~~~~~----~- 214 (380)
..|+||+++|.|+|+++|. +++.|||++|||+|++. ..+|.+|.+++||+++||.||+ |++...... .
T Consensus 417 ~~G~mG~glpaAiGa~la~----p~r~Vv~i~GDG~f~m~--~~eL~Ta~~~~lpv~~vV~NN~~~g~i~~~~~~~~~~~ 490 (591)
T PRK11269 417 QAGPLGWTIPAALGVRAAD----PDRNVVALSGDYDFQFL--IEELAVGAQFNLPYIHVLVNNAYLGLIRQAQRAFDMDY 490 (591)
T ss_pred ccccccchhhhHHhhhhhC----CCCcEEEEEccchhhcC--HHHHHHHHHhCCCeEEEEEeCCchhHHHHHHHHhccCc
Confidence 3589999999999999884 67899999999999875 3559999999999888877776 664321100 0
Q ss_pred -----c----------CCcCHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeec
Q 016903 215 -----F----------RSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 268 (380)
Q Consensus 215 -----~----------~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t~R 268 (380)
. ...||++.|++||+++.+|. +++++..++++|++.+.+.++|+|||+.+.+
T Consensus 491 ~~~~~~~~~~~~~~~~~~~df~~lA~a~G~~~~~v~--~~~eL~~al~~a~~~~~~~~gp~lieV~v~~ 557 (591)
T PRK11269 491 CVQLAFENINSPELNGYGVDHVKVAEGLGCKAIRVF--KPEDIAPALEQAKALMAEFRVPVVVEVILER 557 (591)
T ss_pred cceeeccccccccccCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHhhcccCCCcEEEEEEecc
Confidence 0 13689999999999999998 9999999999998644446899999999954
No 80
>PRK05858 hypothetical protein; Provisional
Probab=99.58 E-value=1e-14 Score=152.66 Aligned_cols=115 Identities=22% Similarity=0.153 Sum_probs=93.9
Q ss_pred CcccccchHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcC-Ccccccccc--------
Q 016903 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN-GWAISTPIS-------- 212 (380)
Q Consensus 142 ~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN-~~~~~~~~~-------- 212 (380)
.|+||+++|.|+|+++|. ++++|||++|||+|++. ..+|.+|.+++||+++||.|| .|++.....
T Consensus 406 ~gsmG~~lp~aiGa~la~----p~r~vv~i~GDG~f~~~--~~eL~Ta~~~~lpi~ivV~NN~~y~~~~~~~~~~~~~~~ 479 (542)
T PRK05858 406 FGCLGTGPGYALAARLAR----PSRQVVLLQGDGAFGFS--LMDVDTLVRHNLPVVSVIGNNGIWGLEKHPMEALYGYDV 479 (542)
T ss_pred ccccccchhHHHHHHHhC----CCCcEEEEEcCchhcCc--HHHHHHHHHcCCCEEEEEEeCCchhhHHHHHHHhcCCcc
Confidence 589999999999998884 78899999999999865 356999999999977777666 466532111
Q ss_pred --cccCCcCHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeec
Q 016903 213 --DQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 268 (380)
Q Consensus 213 --~~~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t~R 268 (380)
...+..||.+.|++||+++.+|+ +++++.+++++|++ .++|+|||+.|.+
T Consensus 480 ~~~~~~~~d~~~lA~a~G~~~~~v~--~~~eL~~al~~a~~----~~~p~lIev~~~~ 531 (542)
T PRK05858 480 AADLRPGTRYDEVVRALGGHGELVT--VPAELGPALERAFA----SGVPYLVNVLTDP 531 (542)
T ss_pred ccccCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHh----CCCcEEEEEEECC
Confidence 11135799999999999999999 99999999999885 5799999999954
No 81
>PRK06882 acetolactate synthase 3 catalytic subunit; Validated
Probab=99.57 E-value=1.9e-14 Score=151.53 Aligned_cols=117 Identities=20% Similarity=0.268 Sum_probs=94.5
Q ss_pred cCcccccchHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCC-cccccc---------
Q 016903 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTP--------- 210 (380)
Q Consensus 141 ~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~-~~~~~~--------- 210 (380)
..|+||+++|.|+|+++|. ++++|||++|||+|++. .++|.+|.+++||+++||.||+ |++...
T Consensus 419 ~~g~mG~~lp~aiGa~la~----p~~~vv~i~GDG~f~~~--~~eL~ta~~~~lpv~~vV~NN~~~~~i~~~q~~~~~~~ 492 (574)
T PRK06882 419 GAGTMGFGLPAAIGVKFAH----PEATVVCVTGDGSIQMN--IQELSTAKQYDIPVVIVSLNNRFLGMVKQWQDLIYSGR 492 (574)
T ss_pred CcccccchhHHHHHHHhhc----CCCcEEEEEcchhhhcc--HHHHHHHHHhCCCeEEEEEECchhHHHHHHHHHhcCCc
Confidence 3588999999999999884 67899999999999875 3779999999999888887776 543211
Q ss_pred cccc--cCCcCHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeec
Q 016903 211 ISDQ--FRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 268 (380)
Q Consensus 211 ~~~~--~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t~R 268 (380)
.... ....++.++|++||+++++|+ +.+++..+++++++. .++|+|||+.+.+
T Consensus 493 ~~~~~~~~~~d~~~la~a~G~~~~~v~--~~~eL~~al~~a~~~---~~~p~liev~i~~ 547 (574)
T PRK06882 493 HSQVYMNSLPDFAKLAEAYGHVGIQID--TPDELEEKLTQAFSI---KDKLVFVDVNVDE 547 (574)
T ss_pred ccccCCCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHhc---CCCcEEEEEEecC
Confidence 0111 124689999999999999998 899999999988863 3689999999965
No 82
>TIGR02418 acolac_catab acetolactate synthase, catabolic. Acetolactate synthase (EC 2.2.1.6) combines two molecules of pyruvate to yield 2-acetolactate with the release of CO2. This reaction may be involved in either valine biosynthesis (biosynthetic) or conversion of pyruvate to acetoin and possibly to 2,3-butanediol (catabolic). The biosynthetic type, described by TIGR00118, is also capable of forming acetohydroxybutyrate from pyruvate and 2-oxobutyrate for isoleucine biosynthesis. The family described here, part of the same larger family of thiamine pyrophosphate-dependent enzymes (pfam00205, pfam02776) is the catabolic form, generally found associated with in species with acetolactate decarboxylase and usually found in the same operon. The model may not encompass all catabolic acetolactate synthases, but rather one particular clade in the larger TPP-dependent enzyme family.
Probab=99.57 E-value=1.8e-14 Score=150.58 Aligned_cols=117 Identities=21% Similarity=0.305 Sum_probs=94.2
Q ss_pred cCcccccchHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcC-Cccccccccc------
Q 016903 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN-GWAISTPISD------ 213 (380)
Q Consensus 141 ~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN-~~~~~~~~~~------ 213 (380)
..|+||+++|.|+|+++|. ++++|||++|||+|++. ..+|.+|.+++||+++||.|| +|++......
T Consensus 406 ~~g~mG~~lpaaiGa~la~----~~~~vv~i~GDGsf~m~--~~eL~Ta~~~~lpi~ivV~NN~~y~~~~~~~~~~~~~~ 479 (539)
T TIGR02418 406 GMQTLGVALPWAIGAALVR----PNTKVVSVSGDGGFLFS--SMELETAVRLKLNIVHIIWNDNGYNMVEFQEEMKYQRS 479 (539)
T ss_pred CccccccHHHHHHHHHHhC----CCCcEEEEEcchhhhch--HHHHHHHHHhCCCeEEEEEECCcchHHHHHHHHhcCCc
Confidence 3579999999999999884 67899999999999864 356999999999977766655 5765321110
Q ss_pred ---ccCCcCHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecC
Q 016903 214 ---QFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRV 269 (380)
Q Consensus 214 ---~~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t~R~ 269 (380)
.....|+.+.|++||+++.+|+ ++.++.+++++|++ .++|+|||+.+.+.
T Consensus 480 ~~~~~~~~d~~~lA~a~G~~~~~V~--~~~eL~~al~~a~~----~~~p~lIev~v~~~ 532 (539)
T TIGR02418 480 SGVDFGPIDFVKYAESFGAKGLRVE--SPDQLEPTLRQAME----VEGPVVVDIPVDYS 532 (539)
T ss_pred ccccCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHh----CCCCEEEEEEecCc
Confidence 1234689999999999999999 99999999998875 47999999999653
No 83
>PRK07064 hypothetical protein; Provisional
Probab=99.56 E-value=1.5e-14 Score=151.27 Aligned_cols=114 Identities=22% Similarity=0.295 Sum_probs=92.7
Q ss_pred CcccccchHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcC-Ccccccccc--------
Q 016903 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN-GWAISTPIS-------- 212 (380)
Q Consensus 142 ~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN-~~~~~~~~~-------- 212 (380)
.|+||+++|.|+|+++|. +++.|||++|||+|++. ..+|.+|.+++||+++||.|| +|++.....
T Consensus 404 ~g~mG~~lpaAiGa~lA~----p~~~vv~i~GDGsf~m~--~~eL~Ta~~~~lpv~ivV~NN~~yg~~~~~~~~~~~~~~ 477 (544)
T PRK07064 404 GGGIGQGLAMAIGAALAG----PGRKTVGLVGDGGLMLN--LGELATAVQENANMVIVLMNDGGYGVIRNIQDAQYGGRR 477 (544)
T ss_pred CCccccccchhhhhhhhC----cCCcEEEEEcchHhhhh--HHHHHHHHHhCCCeEEEEEeCChhHHHHHHHHHhcCCcc
Confidence 478999999999999884 68899999999999864 366999999999977766655 476542111
Q ss_pred --cccCCcCHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEee
Q 016903 213 --DQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTY 267 (380)
Q Consensus 213 --~~~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t~ 267 (380)
......|+.+.|++||+++.+|+ +++++.++++++++ .++|+|||+.++
T Consensus 478 ~~~~~~~~d~~~lA~a~G~~~~~v~--~~~eL~~al~~a~~----~~~p~lIeV~~~ 528 (544)
T PRK07064 478 YYVELHTPDFALLAASLGLPHWRVT--SADDFEAVLREALA----KEGPVLVEVDML 528 (544)
T ss_pred ccccCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHc----CCCCEEEEEEcc
Confidence 11234689999999999999998 89999999998875 479999999986
No 84
>PRK07979 acetolactate synthase 3 catalytic subunit; Validated
Probab=99.56 E-value=2e-14 Score=151.43 Aligned_cols=118 Identities=23% Similarity=0.261 Sum_probs=95.2
Q ss_pred CcccccchHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCC-ccccccc---------
Q 016903 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPI--------- 211 (380)
Q Consensus 142 ~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~-~~~~~~~--------- 211 (380)
.|+||+++|.|+|+++|. +++.|||++|||+|++. ..+|.+|.+++||+++||.||+ |++....
T Consensus 420 ~g~mG~glpaaiGa~la~----p~~~vv~i~GDG~f~m~--~~eL~Ta~r~~l~v~ivV~NN~~yg~i~~~q~~~~~~~~ 493 (574)
T PRK07979 420 LGTMGFGLPAALGVKMAL----PEETVVCVTGDGSIQMN--IQELSTALQYELPVLVLNLNNRYLGMVKQWQDMIYSGRH 493 (574)
T ss_pred ccchhhHHHHHHHHHHhC----CCCeEEEEEcchhhhcc--HHHHHHHHHhCCCeEEEEEeCchhhHHHHHHHHhcCCcc
Confidence 489999999999999884 67899999999999864 4679999999999888777665 6543211
Q ss_pred ccc--cCCcCHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeec
Q 016903 212 SDQ--FRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 268 (380)
Q Consensus 212 ~~~--~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t~R 268 (380)
... ....||++.|++||+++.+|+ +++++..++++|++.++ .++|+|||+.+.+
T Consensus 494 ~~~~~~~~~d~~~iA~a~G~~g~~v~--~~~eL~~al~~a~~~~~-~~~p~lIeV~i~~ 549 (574)
T PRK07979 494 SQSYMQSLPDFVRLAEAYGHVGIQIS--HPDELESKLSEALEQVR-NNRLVFVDVTVDG 549 (574)
T ss_pred ccccCCCCCCHHHHHHHCCCEEEEEC--CHHHHHHHHHHHHhccC-CCCcEEEEEEECC
Confidence 111 124689999999999999998 99999999999987443 3689999999964
No 85
>TIGR03297 Ppyr-DeCO2ase phosphonopyruvate decarboxylase. This family consists of examples of phosphonopyruvate an decarboxylase enzyme that produces phosphonoacetaldehyde (Pald), the second step in the biosynthesis phosphonate-containing compounds. Since the preceding enzymate step, PEP phosphomutase (AepX, TIGR02320) favors the substrate PEP energetically, the decarboxylase is required to drive the reaction in the direction of phosphonate production. Pald is a precursor of natural products including antibiotics like bialaphos and phosphonothricin in Streptomyces species, phosphonate-modified molecules such as the polysaccharide B of Bacteroides fragilis, the phosphonolipids of Tetrahymena pyroformis, the glycosylinositolphospholipids of Trypanosoma cruzi. This gene generally occurs in prokaryotic organisms adjacent to the gene for AepX. Most often an aminotansferase (aepZ) is also present which leads to the production of the most common phosphonate compound, 2-aminoethylphosphonate (A
Probab=99.56 E-value=4.7e-14 Score=140.01 Aligned_cols=118 Identities=20% Similarity=0.148 Sum_probs=93.7
Q ss_pred cCcccccchHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCC-CEEEEEEcCC-cccccccccccCCc
Q 016903 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEA-PVIFICRNNG-WAISTPISDQFRSD 218 (380)
Q Consensus 141 ~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~L-pvi~vv~NN~-~~~~~~~~~~~~~~ 218 (380)
..|+||+++|.|+|+|+|. ++++|||+.|||+|.+. ..+|.+++++++ |+++||.||+ |+............
T Consensus 219 ~~GsMG~a~p~AlG~ala~----p~r~Vv~i~GDGsflm~--~~eL~t~~~~~~~nli~VVlNNg~~~~~g~q~~~~~~~ 292 (361)
T TIGR03297 219 TVGSMGHASQIALGLALAR----PDQRVVCLDGDGAALMH--MGGLATIGTQGPANLIHVLFNNGAHDSVGGQPTVSQHL 292 (361)
T ss_pred eechhhhHHHHHHHHHHHC----CCCCEEEEEChHHHHHH--HHHHHHHHHhCCCCeEEEEEcCccccccCCcCCCCCCC
Confidence 3599999999999999884 67899999999999753 456999999997 8888777776 55433222222357
Q ss_pred CHHHHHhhcCc-eEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCC
Q 016903 219 GAVVKGRAYGV-RSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVG 270 (380)
Q Consensus 219 ~~~~~a~a~G~-~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t~R~~ 270 (380)
|+.+.|++||+ .+++|+ +.+++.++++++.+ .++|+|||+++.+..
T Consensus 293 d~~~iA~a~G~~~~~~v~--~~~eL~~al~~a~~----~~gp~lIeV~v~~g~ 339 (361)
T TIGR03297 293 DFAQIAKACGYAKVYEVS--TLEELETALTAASS----ANGPRLIEVKVRPGS 339 (361)
T ss_pred CHHHHHHHCCCceEEEeC--CHHHHHHHHHHHHh----CCCcEEEEEEecCCC
Confidence 89999999997 577776 99999999998864 479999999986544
No 86
>PRK07418 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=99.56 E-value=1.3e-14 Score=153.91 Aligned_cols=116 Identities=22% Similarity=0.246 Sum_probs=94.0
Q ss_pred cCcccccchHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCC-ccccccccc------
Q 016903 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPISD------ 213 (380)
Q Consensus 141 ~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~-~~~~~~~~~------ 213 (380)
..|+||.++|.|+|+++|. +++.|||++|||+|++. ..+|.+|++++||+++||.||+ |++......
T Consensus 432 ~~g~mG~glpaAiGA~lA~----p~r~Vv~i~GDG~f~m~--~~eL~Ta~r~~lpvi~vV~NN~~~g~i~~~q~~~~~~~ 505 (616)
T PRK07418 432 GLGTMGFGMPAAMGVKVAL----PDEEVICIAGDASFLMN--IQELGTLAQYGINVKTVIINNGWQGMVRQWQESFYGER 505 (616)
T ss_pred CccccccHHHHHHHHHHhC----CCCcEEEEEcchHhhhh--HHHHHHHHHhCCCeEEEEEECCcchHHHHHHHHhcCCC
Confidence 3589999999999998884 78899999999999864 4569999999999888777775 554321110
Q ss_pred ----cc--CCcCHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeec
Q 016903 214 ----QF--RSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 268 (380)
Q Consensus 214 ----~~--~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t~R 268 (380)
.. ...||++.|++||+++++|+ +++++.+++++|++ .++|+|||+.+.+
T Consensus 506 ~~~~~~~~~~~d~~~~A~a~G~~g~~V~--~~~el~~al~~a~~----~~~p~lIeV~i~~ 560 (616)
T PRK07418 506 YSASNMEPGMPDFVKLAEAFGVKGMVIS--ERDQLKDAIAEALA----HDGPVLIDVHVRR 560 (616)
T ss_pred ceeecCCCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHh----CCCCEEEEEEecC
Confidence 01 24689999999999999998 99999999988875 4789999999854
No 87
>PRK09124 pyruvate dehydrogenase; Provisional
Probab=99.56 E-value=2.3e-14 Score=150.87 Aligned_cols=116 Identities=23% Similarity=0.280 Sum_probs=93.4
Q ss_pred cCcccccchHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcC-Cccccccc--------
Q 016903 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN-GWAISTPI-------- 211 (380)
Q Consensus 141 ~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN-~~~~~~~~-------- 211 (380)
..|+||+++|.|+|+++|. ++++|||++|||+|++. ..+|.+|.+++||+++||.|| +|++....
T Consensus 406 ~~G~mG~~lpaAiGa~la~----p~r~vv~i~GDGsf~m~--~~eL~Ta~~~~lpv~ivV~NN~~~g~i~~~~~~~~~~~ 479 (574)
T PRK09124 406 NHGSMANAMPQALGAQAAH----PGRQVVALSGDGGFSML--MGDFLSLVQLKLPVKIVVFNNSVLGFVAMEMKAGGYLT 479 (574)
T ss_pred CcccccchHHHHHHHHHhC----CCCeEEEEecCcHHhcc--HHHHHHHHHhCCCeEEEEEeCCccccHHHHHHhcCCcc
Confidence 4589999999999999884 68899999999999864 355999999999977766655 47653110
Q ss_pred -ccccCCcCHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeec
Q 016903 212 -SDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 268 (380)
Q Consensus 212 -~~~~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t~R 268 (380)
.......|+++.|++||+++.+|+ +++++.+++++|++ .++|+|||+.+.+
T Consensus 480 ~~~~~~~~d~~~lA~a~G~~~~~v~--~~~eL~~al~~a~~----~~~p~lIev~i~~ 531 (574)
T PRK09124 480 DGTDLHNPDFAAIAEACGITGIRVE--KASELDGALQRAFA----HDGPALVDVVTAK 531 (574)
T ss_pred ccCcCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHh----CCCCEEEEEEecC
Confidence 011234689999999999999998 99999999998875 4799999999864
No 88
>PRK07525 sulfoacetaldehyde acetyltransferase; Validated
Probab=99.56 E-value=1.1e-14 Score=153.71 Aligned_cols=121 Identities=19% Similarity=0.226 Sum_probs=95.7
Q ss_pred cCcccccchHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcC-Cccccccccc------
Q 016903 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN-GWAISTPISD------ 213 (380)
Q Consensus 141 ~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN-~~~~~~~~~~------ 213 (380)
..|+||+++|.|+|+++|. ++++|||++|||+|+++ . .+|.+|.+++||+++||.|| +|++......
T Consensus 433 ~~g~mG~glp~aiGa~la~----p~r~vv~i~GDG~f~~~-~-~el~Ta~~~~lpv~ivV~NN~~y~~~~~~~~~~~~~~ 506 (588)
T PRK07525 433 SFGNCGYAFPAIIGAKIAC----PDRPVVGFAGDGAWGIS-M-NEVMTAVRHNWPVTAVVFRNYQWGAEKKNQVDFYNNR 506 (588)
T ss_pred cccccccHHHHHHHHHHhC----CCCcEEEEEcCchHhcc-H-HHHHHHHHhCCCeEEEEEeCchhHHHHHHHHHHhCCC
Confidence 3589999999999999884 67899999999999876 3 45899999999987777555 6765321100
Q ss_pred ----cc-CCcCHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCC
Q 016903 214 ----QF-RSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVG 270 (380)
Q Consensus 214 ----~~-~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t~R~~ 270 (380)
.. ...|+.++|++||+++++|+ +++++.++++++++.. +.++|+|||+.+.+-.
T Consensus 507 ~~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~el~~al~~a~~~~-~~~~p~lIev~~~~~~ 565 (588)
T PRK07525 507 FVGTELDNNVSYAGIAEAMGAEGVVVD--TQEELGPALKRAIDAQ-NEGKTTVIEIMCNQEL 565 (588)
T ss_pred cccccCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHhcC-CCCCcEEEEEEecccc
Confidence 11 23689999999999999998 9999999999998743 2358999999996544
No 89
>PRK08199 thiamine pyrophosphate protein; Validated
Probab=99.56 E-value=2.5e-14 Score=150.17 Aligned_cols=116 Identities=24% Similarity=0.295 Sum_probs=93.8
Q ss_pred cCcccccchHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCC-ccccccc-c------
Q 016903 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPI-S------ 212 (380)
Q Consensus 141 ~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~-~~~~~~~-~------ 212 (380)
..|+||+++|.|+|++++ .++++|||++|||+|++. .++|.+|++++||+++||.||+ |++.... .
T Consensus 413 ~~g~mG~glpaaiGa~la----~p~~~vv~i~GDGsf~~~--~~el~ta~~~~l~i~~vv~nN~~~~~~~~~~~~~~~~~ 486 (557)
T PRK08199 413 TSGSMGYGLPAAIAAKLL----FPERTVVAFAGDGCFLMN--GQELATAVQYGLPIIVIVVNNGMYGTIRMHQEREYPGR 486 (557)
T ss_pred CCccccchHHHHHHHHHh----CCCCcEEEEEcchHhhcc--HHHHHHHHHhCCCeEEEEEeCCcchHHHHHHHHhcCCc
Confidence 358999999999998887 468899999999999854 4779999999999999888777 6643211 0
Q ss_pred ---cccCCcCHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeec
Q 016903 213 ---DQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 268 (380)
Q Consensus 213 ---~~~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t~R 268 (380)
......|+++.+++||+++.+|+ +++++.++++++++ .++|+|||+.+.+
T Consensus 487 ~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~~----~~gp~li~v~~~~ 539 (557)
T PRK08199 487 VSGTDLTNPDFAALARAYGGHGETVE--RTEDFAPAFERALA----SGKPALIEIRIDP 539 (557)
T ss_pred cccccCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHh----CCCCEEEEEEeCH
Confidence 11123689999999999999999 88898888888764 5899999999954
No 90
>PRK06457 pyruvate dehydrogenase; Provisional
Probab=99.56 E-value=2.4e-14 Score=150.01 Aligned_cols=116 Identities=16% Similarity=0.264 Sum_probs=93.2
Q ss_pred cCcccccchHHHHHHHHHhhhcCC-CCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcC-Cccccccc-------
Q 016903 141 VSSTIATQLPHAVGAAYALKMDRK-DACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN-GWAISTPI------- 211 (380)
Q Consensus 141 ~~g~lG~~lp~A~G~A~A~k~~~~-~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN-~~~~~~~~------- 211 (380)
..|+||+++|.|+|+++|. + +++|||++|||+|++. ..+|.+|.+++||+++||.|| +|++....
T Consensus 394 ~~g~mG~glpaaiGa~la~----p~~~~Vv~i~GDGsf~~~--~~eL~Ta~~~~lpi~ivV~NN~~~g~i~~~q~~~~~~ 467 (549)
T PRK06457 394 WLGSMGIGVPGSVGASFAV----ENKRQVISFVGDGGFTMT--MMELITAKKYDLPVKIIIYNNSKLGMIKFEQEVMGYP 467 (549)
T ss_pred CcchhhhhHHHHHHHHhcC----CCCCeEEEEEcccHHhhh--HHHHHHHHHHCCCeEEEEEECCccchHHHHHHHhcCC
Confidence 3699999999999999874 4 7899999999999864 466999999999977766555 57653210
Q ss_pred --ccccCCcCHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeec
Q 016903 212 --SDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 268 (380)
Q Consensus 212 --~~~~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t~R 268 (380)
.......|+.+.|++||+++.+|+ ++.++..+++++++ .++|+|||+.+.+
T Consensus 468 ~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~el~~al~~a~~----~~~p~lIeV~i~~ 520 (549)
T PRK06457 468 EWGVDLYNPDFTKIAESIGFKGFRLE--EPKEAEEIIEEFLN----TKGPAVLDAIVDP 520 (549)
T ss_pred cccccCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHh----CCCCEEEEEEeCc
Confidence 011124689999999999999998 99999999998875 4799999999954
No 91
>PRK07586 hypothetical protein; Validated
Probab=99.56 E-value=1.5e-14 Score=150.25 Aligned_cols=113 Identities=31% Similarity=0.260 Sum_probs=90.5
Q ss_pred CcccccchHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcC-Cccccccc-----c---
Q 016903 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN-GWAISTPI-----S--- 212 (380)
Q Consensus 142 ~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN-~~~~~~~~-----~--- 212 (380)
.|+||+++|.|+|+++|. ++++|||++|||+|++. ..+|.+|.+++||+++||.|| +|++.... .
T Consensus 384 ~g~mG~~lpaaiGa~lA~----p~r~Vv~i~GDGsf~m~--~~EL~Ta~~~~lpv~ivV~NN~~y~~~~~~~~~~~~~~~ 457 (514)
T PRK07586 384 GGAIGQGLPLATGAAVAC----PDRKVLALQGDGSAMYT--IQALWTQARENLDVTTVIFANRAYAILRGELARVGAGNP 457 (514)
T ss_pred CcccccHHHHHHHHHHhC----CCCeEEEEEechHHHhH--HHHHHHHHHcCCCCEEEEEeCchhHHHHHHHHHhcCCCC
Confidence 489999999999999884 68899999999999864 467999999999976666555 57753210 0
Q ss_pred --------c-ccCCcCHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEe
Q 016903 213 --------D-QFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALT 266 (380)
Q Consensus 213 --------~-~~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t 266 (380)
. ..+..|+.+.|++||+++.+|+ ++.++.+++++|++ .++|+|||+.+
T Consensus 458 ~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~V~--~~~el~~al~~a~~----~~~p~liev~~ 514 (514)
T PRK07586 458 GPRALDMLDLDDPDLDWVALAEGMGVPARRVT--TAEEFADALAAALA----EPGPHLIEAVV 514 (514)
T ss_pred CccccccccCCCCCCCHHHHHHHCCCcEEEeC--CHHHHHHHHHHHHc----CCCCEEEEEEC
Confidence 0 0123689999999999999998 89999998888875 47999999864
No 92
>PLN02573 pyruvate decarboxylase
Probab=99.55 E-value=2.2e-14 Score=151.12 Aligned_cols=116 Identities=17% Similarity=0.153 Sum_probs=93.0
Q ss_pred CcccccchHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcC-Ccccccccc----cccC
Q 016903 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN-GWAISTPIS----DQFR 216 (380)
Q Consensus 142 ~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN-~~~~~~~~~----~~~~ 216 (380)
.|+||+++|.|+|+++|. ++++|||++|||+|++. ..+|.+|++++||+++||.|| +|++..... ....
T Consensus 427 ~gsmG~glpaaiGa~lA~----p~r~vv~i~GDG~f~m~--~~EL~Ta~r~~lpvv~vV~NN~~yg~~~~~~~~~~~~~~ 500 (578)
T PLN02573 427 YGSIGWSVGATLGYAQAA----PDKRVIACIGDGSFQVT--AQDVSTMIRCGQKSIIFLINNGGYTIEVEIHDGPYNVIK 500 (578)
T ss_pred hhhhhhhhhHHHHHHHhC----CCCceEEEEeccHHHhH--HHHHHHHHHcCCCCEEEEEeCCceeEEEeecccCccccC
Confidence 589999999999999885 67899999999999864 466999999999977766655 477543211 1123
Q ss_pred CcCHHHHHhhcC-----ceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEee
Q 016903 217 SDGAVVKGRAYG-----VRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTY 267 (380)
Q Consensus 217 ~~~~~~~a~a~G-----~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t~ 267 (380)
..|+.++|++|| +++.+|+ +++++.+++++|++. ..++|+|||+.+.
T Consensus 501 ~~d~~~lA~a~G~~~g~~~~~~V~--~~~eL~~al~~a~~~--~~~~p~lieV~v~ 552 (578)
T PLN02573 501 NWNYTGLVDAIHNGEGKCWTAKVR--TEEELIEAIATATGE--KKDCLCFIEVIVH 552 (578)
T ss_pred CCCHHHHHHHhcCcCCceeEEEec--CHHHHHHHHHHHHhh--CCCCcEEEEEEcC
Confidence 468999999995 8999999 899999999998742 2478999999883
No 93
>PRK06112 acetolactate synthase catalytic subunit; Validated
Probab=99.55 E-value=2.9e-14 Score=150.30 Aligned_cols=115 Identities=29% Similarity=0.391 Sum_probs=92.8
Q ss_pred CcccccchHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCC-cccccccc--------
Q 016903 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPIS-------- 212 (380)
Q Consensus 142 ~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~-~~~~~~~~-------- 212 (380)
.|+||+++|.|+|+++| .++++|||++|||+|++ ..++|++|+++++|+++||.||+ |++....+
T Consensus 436 ~gsmG~~l~~aiGa~la----~~~~~vv~i~GDGsf~~--~~~el~ta~~~~l~~~~vv~NN~~~g~~~~~~~~~~~~~~ 509 (578)
T PRK06112 436 LAGLGWGVPMAIGAKVA----RPGAPVICLVGDGGFAH--VWAELETARRMGVPVTIVVLNNGILGFQKHAETVKFGTHT 509 (578)
T ss_pred ccccccHHHHHHHHHhh----CCCCcEEEEEcchHHHh--HHHHHHHHHHhCCCeEEEEEeCCccCCEEeccccccCCcc
Confidence 47899999999999887 46789999999999974 56889999999999888888886 34322110
Q ss_pred --cccCCcCHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeec
Q 016903 213 --DQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 268 (380)
Q Consensus 213 --~~~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t~R 268 (380)
......++.++|++||+++++|+ +++++.++++++++ .+||+|||+++.+
T Consensus 510 ~~~~~~~~d~~~~A~a~G~~~~~v~--~~~el~~al~~a~~----~~gp~lIev~~~~ 561 (578)
T PRK06112 510 DACHFAAVDHAAIARACGCDGVRVE--DPAELAQALAAAMA----APGPTLIEVITDP 561 (578)
T ss_pred ccCcCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHh----CCCCEEEEEEcCc
Confidence 01124689999999999999998 88999888888875 5899999999854
No 94
>cd02018 TPP_PFOR Thiamine pyrophosphate (TPP family), Pyruvate ferredoxin/flavodoxin oxidoreductase (PFOR) subfamily, TPP-binding module; PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. PFORs can be homodimeric, heterodimeric, or heterotetrameric, depending on the organism. These enzymes are dependent on TPP and a divalent metal cation as cofactors.
Probab=99.55 E-value=1.8e-14 Score=135.45 Aligned_cols=119 Identities=20% Similarity=0.198 Sum_probs=90.0
Q ss_pred cCcccccchHHHHHHHHHh-hhcCCCCeeEEEeCccccC-cchHHHHHHHHHHcCCCEEEEEEcCC-ccccccccc----
Q 016903 141 VSSTIATQLPHAVGAAYAL-KMDRKDACAVTYFGDGGTS-EGDFHAALNFSAVTEAPVIFICRNNG-WAISTPISD---- 213 (380)
Q Consensus 141 ~~g~lG~~lp~A~G~A~A~-k~~~~~~~vv~~~GDG~~~-eG~~~Eal~~A~~~~Lpvi~vv~NN~-~~~~~~~~~---- 213 (380)
..|+||+++|.|+|+++|. +...++++|||+.|||++. .| +.+ +.++.++++|+++||.||+ |++...+..
T Consensus 62 ~~g~mG~GlpaAiGA~~a~~~~~~p~~~Vv~i~GDG~~~~~g-~~~-l~ta~~~~l~i~ivVlNN~~yg~~~~q~~~~~~ 139 (237)
T cd02018 62 DANAVASGLKRGLKARFPKDRELDKKKDVVVIGGDGATYDIG-FGA-LSHSLFRGEDITVIVLDNEVYSNTGGQRSGATP 139 (237)
T ss_pred CHHHHHHHHHHHHHhhcccccccCCCCcEEEEeCchHHHhcc-HHH-HHHHHHcCCCeEEEEECCccccCCCCCCCCCCc
Confidence 3489999999999998771 1113678999999999984 44 333 6778889999888887776 554321110
Q ss_pred ------------ccCCcCHHHHHhhcCceEEE---EeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEe
Q 016903 214 ------------QFRSDGAVVKGRAYGVRSIR---VDGNDALAIYSAVHAAREMAIGEGRPILIEALT 266 (380)
Q Consensus 214 ------------~~~~~~~~~~a~a~G~~~~~---VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t 266 (380)
.....|+++.|++||+++++ |+ ++.++.+++++|++ +.+||+||++.+
T Consensus 140 ~g~~~~~~~~~~~~~~~D~~~iA~a~G~~~~~~~~v~--~~~~l~~al~~al~---~~~GP~lI~v~i 202 (237)
T cd02018 140 LGADSKMAPAGKKEDKKDLVLIAATHGCVYVARLSPA--LKKHFLKVVKEAIS---RTDGPTFIHAYT 202 (237)
T ss_pred CCCcccccCCCCcCCCCCHHHHHHHCCCCEEEEEccC--CHHHHHHHHHHHHh---cCCCCEEEEEeC
Confidence 12346899999999999986 66 89999999998885 148999999986
No 95
>PRK06456 acetolactate synthase catalytic subunit; Reviewed
Probab=99.55 E-value=2.1e-14 Score=151.11 Aligned_cols=116 Identities=24% Similarity=0.277 Sum_probs=94.2
Q ss_pred cCcccccchHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCC-ccccccccc------
Q 016903 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPISD------ 213 (380)
Q Consensus 141 ~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~-~~~~~~~~~------ 213 (380)
..|+||+++|.|+|+++|. ++++|||++|||+|++.. .+|.+|.+++||+++||.||+ |++....+.
T Consensus 419 ~~g~mG~glpaAiGa~la~----p~~~vv~i~GDG~f~m~~--~eL~Ta~~~~l~i~ivV~NN~~yg~i~~~q~~~~~~~ 492 (572)
T PRK06456 419 GMGTMGFGLPAAMGAKLAR----PDKVVVDLDGDGSFLMTG--TNLATAVDEHIPVISVIFDNRTLGLVRQVQDLFFGKR 492 (572)
T ss_pred CcccccchhHHHHHHHHhC----CCCeEEEEEccchHhcch--HHHHHHHHhCCCeEEEEEECCchHHHHHHHHHhhCCC
Confidence 3589999999999999884 678999999999998653 569999999999777776665 765431110
Q ss_pred ----cc-CCcCHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeec
Q 016903 214 ----QF-RSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 268 (380)
Q Consensus 214 ----~~-~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t~R 268 (380)
.. ...|+++.|++||+++.+|. +++++.+++++|.+ .++|+|||+.+.+
T Consensus 493 ~~~~~~~~~~d~~~~A~a~G~~~~~v~--~~~eL~~al~~a~~----~~~p~lIev~v~~ 546 (572)
T PRK06456 493 IVGVDYGPSPDFVKLAEAFGALGFNVT--TYEDIEKSLKSAIK----EDIPAVIRVPVDK 546 (572)
T ss_pred cccccCCCCCCHHHHHHHCCCeeEEeC--CHHHHHHHHHHHHh----CCCCEEEEEEeCc
Confidence 11 24689999999999999998 99999999988875 4799999999965
No 96
>PRK06965 acetolactate synthase 3 catalytic subunit; Validated
Probab=99.55 E-value=3.5e-14 Score=149.94 Aligned_cols=116 Identities=22% Similarity=0.277 Sum_probs=93.8
Q ss_pred CcccccchHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCC-ccccccc---------
Q 016903 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPI--------- 211 (380)
Q Consensus 142 ~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~-~~~~~~~--------- 211 (380)
.|+||+++|.|+|+++|. +++.|||++|||+|++. ..+|.+|.+++||+++||.||+ |++....
T Consensus 436 ~gsmG~glpaaiGa~lA~----p~r~Vv~i~GDGsf~m~--~~eL~Ta~r~~lpviivV~NN~~~~~i~~~q~~~~~~~~ 509 (587)
T PRK06965 436 LGTMGVGLPYAMGIKMAH----PDDDVVCITGEGSIQMC--IQELSTCLQYDTPVKIISLNNRYLGMVRQWQEIEYSKRY 509 (587)
T ss_pred cccccchHHHHHHHHHhC----CCCcEEEEEcchhhhcC--HHHHHHHHHcCCCeEEEEEECCcchHHHHHHHHhcCCCc
Confidence 489999999999999884 68899999999999865 3669999999999888777665 5543211
Q ss_pred ccc-c-CCcCHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeec
Q 016903 212 SDQ-F-RSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 268 (380)
Q Consensus 212 ~~~-~-~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t~R 268 (380)
... . ..+|+++.|++||+++.+|+ +..++.+++++|+++ .++|+|||+.+.+
T Consensus 510 ~~~~~~~~~d~~~iA~a~G~~~~~v~--~~~eL~~al~~a~~~---~~~p~lieV~i~~ 563 (587)
T PRK06965 510 SHSYMDALPDFVKLAEAYGHVGMRIE--KTSDVEPALREALRL---KDRTVFLDFQTDP 563 (587)
T ss_pred cccCCCCCCCHHHHHHHCCCEEEEEC--CHHHHHHHHHHHHhc---CCCcEEEEEEecc
Confidence 011 1 24689999999999999998 999999999998863 3689999999954
No 97
>PRK07710 acetolactate synthase catalytic subunit; Reviewed
Probab=99.55 E-value=4.4e-14 Score=148.71 Aligned_cols=115 Identities=27% Similarity=0.361 Sum_probs=92.3
Q ss_pred CcccccchHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCC-ccccccc---------
Q 016903 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPI--------- 211 (380)
Q Consensus 142 ~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~-~~~~~~~--------- 211 (380)
.|+||+++|.|+|+++|. ++++||+++|||+|++. +. +|++|.++++|+++||.||+ |++....
T Consensus 423 ~g~mG~glpaAiGaala~----p~~~vv~i~GDGsf~m~-~~-eL~ta~r~~lpi~ivV~NN~~~~~i~~~~~~~~~~~~ 496 (571)
T PRK07710 423 LGTMGFGLPAAIGAQLAK----PDETVVAIVGDGGFQMT-LQ-ELSVIKELSLPVKVVILNNEALGMVRQWQEEFYNQRY 496 (571)
T ss_pred cccccchHHHHHHHHHhC----CCCcEEEEEcchHHhhh-HH-HHHHHHHhCCCeEEEEEECchHHHHHHHHHHHhCCcc
Confidence 489999999999999884 68899999999999864 34 49999999999777666554 6653211
Q ss_pred c--cccCCcCHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeec
Q 016903 212 S--DQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 268 (380)
Q Consensus 212 ~--~~~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t~R 268 (380)
. ......++++.|++||+++.+|+ +.+++..++++|++ .++|+|||+.+.+
T Consensus 497 ~~~~~~~~~d~~~~A~a~G~~~~~v~--~~~el~~al~~a~~----~~~p~lieV~vd~ 549 (571)
T PRK07710 497 SHSLLSCQPDFVKLAEAYGIKGVRID--DELEAKEQLQHAIE----LQEPVVIDCRVLQ 549 (571)
T ss_pred eeccCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHh----CCCCEEEEEEecC
Confidence 0 11134689999999999999998 78888888888775 5799999999965
No 98
>CHL00099 ilvB acetohydroxyacid synthase large subunit
Probab=99.54 E-value=2.9e-14 Score=150.53 Aligned_cols=116 Identities=22% Similarity=0.279 Sum_probs=93.4
Q ss_pred cCcccccchHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCC-ccccccc--------
Q 016903 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPI-------- 211 (380)
Q Consensus 141 ~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~-~~~~~~~-------- 211 (380)
..|+||+++|.|+|+++|. ++++|||++|||+|++. ..+|.+|++++||+++||.||+ |++....
T Consensus 428 ~~g~mG~glpaaiGaala~----p~~~vv~i~GDG~f~m~--~~eL~Ta~~~~l~~~~vV~NN~~y~~i~~~q~~~~~~~ 501 (585)
T CHL00099 428 GLGTMGYGLPAAIGAQIAH----PNELVICISGDASFQMN--LQELGTIAQYNLPIKIIIINNKWQGMVRQWQQAFYGER 501 (585)
T ss_pred cccchhhhHHHHHHHHHhC----CCCeEEEEEcchhhhhh--HHHHHHHHHhCCCeEEEEEECCcchHHHHHHHHhcCCC
Confidence 3589999999999999884 57899999999999864 4669999999999888887776 4432110
Q ss_pred -cc---ccCCcCHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeec
Q 016903 212 -SD---QFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 268 (380)
Q Consensus 212 -~~---~~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t~R 268 (380)
.. .....|+.+++++||+++.+|+ +++++.+++++|++ .++|+|||+.+.+
T Consensus 502 ~~~~~~~~~~~d~~~la~a~G~~~~~v~--~~~el~~al~~a~~----~~~p~liev~v~~ 556 (585)
T CHL00099 502 YSHSNMEEGAPDFVKLAEAYGIKGLRIK--SRKDLKSSLKEALD----YDGPVLIDCQVIE 556 (585)
T ss_pred cccccCCCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHh----CCCCEEEEEEECC
Confidence 00 1123689999999999999998 89999888888875 5799999999953
No 99
>PLN02470 acetolactate synthase
Probab=99.54 E-value=2.8e-14 Score=150.59 Aligned_cols=115 Identities=21% Similarity=0.228 Sum_probs=92.7
Q ss_pred CcccccchHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCC-ccccccc---------
Q 016903 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPI--------- 211 (380)
Q Consensus 142 ~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~-~~~~~~~--------- 211 (380)
.|+||+++|.|+|+++|. +++.|||++|||+|++. ..+|.+|.+++||+++||.||+ |++....
T Consensus 425 ~g~mG~glpaaiGa~la~----p~~~Vv~i~GDG~f~m~--~~eL~Ta~~~~l~v~ivV~NN~~yg~i~~~~~~~~~~~~ 498 (585)
T PLN02470 425 LGAMGFGLPAAIGAAAAN----PDAIVVDIDGDGSFIMN--IQELATIHVENLPVKIMVLNNQHLGMVVQWEDRFYKANR 498 (585)
T ss_pred cccccchHHHHHHHHHhC----CCCcEEEEEccchhhcc--HHHHHHHHHhCCCeEEEEEeCCcchHHHHHHHHHhCCce
Confidence 589999999999999884 68899999999999875 3669999999999777666664 6543210
Q ss_pred ccc-cC--------CcCHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeec
Q 016903 212 SDQ-FR--------SDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 268 (380)
Q Consensus 212 ~~~-~~--------~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t~R 268 (380)
... .. ..|+.+.|++||+++.+|+ ++.++.++++++++ .++|+|||+.+.+
T Consensus 499 ~~~~~~~~~~~~~~~~d~~~iA~a~G~~~~~v~--~~~el~~al~~a~~----~~~p~lieV~i~~ 558 (585)
T PLN02470 499 AHTYLGDPDAEAEIFPDFLKFAEGCKIPAARVT--RKSDLREAIQKMLD----TPGPYLLDVIVPH 558 (585)
T ss_pred eeeecCccccccCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHh----CCCCEEEEEEeCC
Confidence 000 00 2589999999999999998 89999999999876 4799999999964
No 100
>PRK08979 acetolactate synthase 3 catalytic subunit; Validated
Probab=99.54 E-value=4.2e-14 Score=148.87 Aligned_cols=116 Identities=24% Similarity=0.311 Sum_probs=93.3
Q ss_pred CcccccchHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCC-ccccccc---------
Q 016903 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPI--------- 211 (380)
Q Consensus 142 ~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~-~~~~~~~--------- 211 (380)
.|+||+++|.|+|+++|. +++.|||++|||+|++. ..+|.+|.+++||+++||.||+ |++....
T Consensus 420 ~g~mG~glpaaiGa~la~----p~~~vv~i~GDG~f~m~--~~EL~Ta~r~~lpv~~vV~NN~~y~~i~~~q~~~~~~~~ 493 (572)
T PRK08979 420 LGTMGFGLPAAMGVKFAM----PDETVVCVTGDGSIQMN--IQELSTALQYDIPVKIINLNNRFLGMVKQWQDMIYQGRH 493 (572)
T ss_pred cccccchhhHHHhhhhhC----CCCeEEEEEcchHhhcc--HHHHHHHHHcCCCeEEEEEeCCccHHHHHHHHHHhCCcc
Confidence 479999999999999884 68899999999999865 3669999999999777776665 6543211
Q ss_pred ccc-c-CCcCHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeec
Q 016903 212 SDQ-F-RSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 268 (380)
Q Consensus 212 ~~~-~-~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t~R 268 (380)
... . ...||++.|++||+++.+|+ ++.++..+++++++. .++|+|||+.+.+
T Consensus 494 ~~~~~~~~~d~~~~A~a~G~~~~~v~--~~~eL~~al~~a~~~---~~~p~lIev~i~~ 547 (572)
T PRK08979 494 SHSYMDSVPDFAKIAEAYGHVGIRIS--DPDELESGLEKALAM---KDRLVFVDINVDE 547 (572)
T ss_pred cccCCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHhc---CCCcEEEEEEeCC
Confidence 011 1 24689999999999999999 999999999988752 3789999999964
No 101
>TIGR02720 pyruv_oxi_spxB pyruvate oxidase. Members of this family are examples of pyruvate oxidase (EC 1.2.3.3), an enzyme with FAD and TPP as cofactors that catalyzes the reaction pyruvate + phosphate + O2 + H2O = acetyl phosphate + CO2 + H2O2. It should not be confused with pyruvate dehydrogenase [cytochrome] (EC 1.2.2.2) as in E. coli PoxB, although the E. coli enzyme is closely homologous and has pyruvate oxidase as an alternate name.
Probab=99.54 E-value=4.4e-14 Score=148.79 Aligned_cols=117 Identities=21% Similarity=0.252 Sum_probs=93.4
Q ss_pred CcccccchHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEE-cCCccccccc----c----
Q 016903 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICR-NNGWAISTPI----S---- 212 (380)
Q Consensus 142 ~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~-NN~~~~~~~~----~---- 212 (380)
.|+||+++|.|+|+++|. ++++||+++|||+|++. ..+|.+|++++||+++||. ||+|++.... .
T Consensus 407 ~gsmG~glpaAiGa~la~----p~r~Vv~i~GDGsf~m~--~~eL~Tavr~~lpi~~VV~NN~~yg~i~~~~~~~~~~~~ 480 (575)
T TIGR02720 407 FATMGVGVPGAIAAKLNY----PDRQVFNLAGDGAFSMT--MQDLLTQVQYHLPVINIVFSNCTYGFIKDEQEDTNQPLI 480 (575)
T ss_pred cchhhchHHHHHHHHHhC----CCCcEEEEEcccHHHhh--HHHHHHHHHhCCCeEEEEEeCCccHHHHHHHHHhCCCcc
Confidence 589999999999988874 68899999999999864 4669999999999777655 5558753211 0
Q ss_pred -cccCCcCHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeec
Q 016903 213 -DQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 268 (380)
Q Consensus 213 -~~~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t~R 268 (380)
......|++++|++||+++.+|+ +..++.++++++++ + +.++|+|||+.+..
T Consensus 481 ~~~~~~~df~~iA~a~G~~~~~v~--~~~el~~al~~a~~-~-~~~~p~liev~i~~ 533 (575)
T TIGR02720 481 GVDFNDADFAKIAEGVGAVGFRVN--KIEQLPAVFEQAKA-I-KQGKPVLIDAKITG 533 (575)
T ss_pred cccCCCCCHHHHHHHCCCEEEEeC--CHHHHHHHHHHHHh-h-CCCCcEEEEEEeCC
Confidence 11234689999999999999998 88999999999874 2 35799999999854
No 102
>TIGR03393 indolpyr_decarb indolepyruvate decarboxylase, Erwinia family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. Within the larger family, this model represents a clade of bacterial indolepyruvate decarboxylases, part of a pathway for biosynthesis of the plant hormone indole-3-acetic acid. Typically, these species interact with plants, as pathogens or as beneficial, root-associated bacteria.
Probab=99.54 E-value=2.7e-14 Score=149.36 Aligned_cols=114 Identities=20% Similarity=0.220 Sum_probs=91.5
Q ss_pred CcccccchHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEc-CCcccccccc------cc
Q 016903 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRN-NGWAISTPIS------DQ 214 (380)
Q Consensus 142 ~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~N-N~~~~~~~~~------~~ 214 (380)
.|+||+++|.|+|+++|. ++++|||++|||+|++. ..+|.+|++++||+++||.| ++|++..... ..
T Consensus 403 ~g~mG~glpaaiGa~la~----p~~~vv~i~GDG~f~m~--~~EL~Ta~~~~lpi~~vV~NN~~y~~i~~~~~~~~~~~~ 476 (539)
T TIGR03393 403 WGSIGYTLPAAFGAQTAC----PNRRVILLIGDGSAQLT--IQELGSMLRDKQHPIILVLNNEGYTVERAIHGAEQRYND 476 (539)
T ss_pred hhhhhhHHHHHHHHHhcC----CCCCeEEEEcCcHHHhH--HHHHHHHHHcCCCCEEEEEeCCceEEEEeecCCCCCcCc
Confidence 589999999999998874 78899999999999864 46799999999996666654 5576542111 12
Q ss_pred cCCcCHHHHHhhcCce----EEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEee
Q 016903 215 FRSDGAVVKGRAYGVR----SIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTY 267 (380)
Q Consensus 215 ~~~~~~~~~a~a~G~~----~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t~ 267 (380)
....|+++.+++||++ +.+|+ +..++.++++++++ .++|+|||+.+.
T Consensus 477 ~~~~df~~la~a~G~~~~~~~~~v~--~~~el~~al~~a~~----~~~p~liev~i~ 527 (539)
T TIGR03393 477 IALWNWTHLPQALSLDPQSECWRVS--EAEQLADVLEKVAA----HERLSLIEVVLP 527 (539)
T ss_pred CCCCCHHHHHHHcCCCCccceEEec--cHHHHHHHHHHHhc----cCCeEEEEEEcC
Confidence 2346899999999996 89998 89999999988875 489999999983
No 103
>PRK08273 thiamine pyrophosphate protein; Provisional
Probab=99.54 E-value=4.9e-14 Score=149.10 Aligned_cols=116 Identities=24% Similarity=0.267 Sum_probs=93.3
Q ss_pred CcccccchHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHc-----CCCEEEEEEcCC-ccccccc----
Q 016903 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVT-----EAPVIFICRNNG-WAISTPI---- 211 (380)
Q Consensus 142 ~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~-----~Lpvi~vv~NN~-~~~~~~~---- 211 (380)
.|+||+++|.|+|+++|. ++++|||++|||+|++... .+|.+|+++ +||+++||.||+ |++....
T Consensus 414 ~g~mG~glpaaiGa~la~----p~~~Vv~i~GDG~f~m~~~-~EL~Ta~r~~~~~~~lpviivV~NN~~~~~i~~~q~~~ 488 (597)
T PRK08273 414 LATMGPAVPYAIAAKFAH----PDRPVIALVGDGAMQMNGM-AELITVAKYWRQWSDPRLIVLVLNNRDLNQVTWEQRVM 488 (597)
T ss_pred cccccchHHHHHHHHHhC----CCCcEEEEEcchhHhccch-HHHHHHHHHhhcccCCCEEEEEEeCCcchHHHHHHHHh
Confidence 489999999999999884 6889999999999976422 559999999 899888777775 6543211
Q ss_pred -----c---cccCCcCHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeec
Q 016903 212 -----S---DQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 268 (380)
Q Consensus 212 -----~---~~~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t~R 268 (380)
. ...+..|+++.|++||+++.+|. +++++..++++|++ .++|+|||+.+.+
T Consensus 489 ~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~eL~~al~~a~~----~~~p~lIeV~~~~ 547 (597)
T PRK08273 489 EGDPKFEASQDLPDVPYARFAELLGLKGIRVD--DPEQLGAAWDEALA----ADRPVVLEVKTDP 547 (597)
T ss_pred cCCCcccccccCCCCCHHHHHHHCCCEEEEEC--CHHHHHHHHHHHHh----CCCCEEEEEEeCC
Confidence 0 01134679999999999999999 89999999999875 4899999999955
No 104
>PRK08617 acetolactate synthase; Reviewed
Probab=99.54 E-value=3.1e-14 Score=149.29 Aligned_cols=115 Identities=19% Similarity=0.265 Sum_probs=92.7
Q ss_pred CcccccchHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcC-Cccccccccc-------
Q 016903 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN-GWAISTPISD------- 213 (380)
Q Consensus 142 ~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN-~~~~~~~~~~------- 213 (380)
.|+||+++|.|+|+++|. +++.|||++|||+|++. ..+|.+|++++||+++||.|| .|++......
T Consensus 413 ~g~mG~~lpaaiGa~la~----p~~~vv~i~GDGsf~m~--~~eL~Ta~~~~lpv~~vV~NN~~~~~~~~~~~~~~~~~~ 486 (552)
T PRK08617 413 MQTLGVALPWAIAAALVR----PGKKVVSVSGDGGFLFS--AMELETAVRLKLNIVHIIWNDGHYNMVEFQEEMKYGRSS 486 (552)
T ss_pred cccccccccHHHhhHhhc----CCCcEEEEEechHHhhh--HHHHHHHHHhCCCeEEEEEECCccchHHHHHHhhcCCcc
Confidence 579999999999999874 78899999999999864 366999999999987766655 4665321110
Q ss_pred --ccCCcCHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeec
Q 016903 214 --QFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 268 (380)
Q Consensus 214 --~~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t~R 268 (380)
.....|+.+.|++||+++.+|. ++.++.+++++|++ .++|+|||+.+.+
T Consensus 487 ~~~~~~~d~~~lA~a~G~~~~~v~--~~~eL~~al~~a~~----~~~p~liev~~~~ 537 (552)
T PRK08617 487 GVDFGPVDFVKYAESFGAKGLRVT--SPDELEPVLREALA----TDGPVVIDIPVDY 537 (552)
T ss_pred cCCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHh----CCCcEEEEEEecc
Confidence 1124689999999999999998 89999999998875 4789999999865
No 105
>PRK09628 oorB 2-oxoglutarate-acceptor oxidoreductase subunit OorB; Reviewed
Probab=99.53 E-value=3.9e-14 Score=135.66 Aligned_cols=113 Identities=15% Similarity=0.068 Sum_probs=87.0
Q ss_pred cccccchHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCC-ccccccccc--------
Q 016903 143 STIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPISD-------- 213 (380)
Q Consensus 143 g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~-~~~~~~~~~-------- 213 (380)
+++|.++|.|+|+++|. +++.|||+.|||++.. .-...+.+|+++++||++||.||+ |++...+..
T Consensus 68 ~~~G~alPaAiGaklA~----Pdr~VV~i~GDG~f~~-~g~~el~ta~r~nlpi~iIV~NN~~yGmt~~Q~~~~t~~g~~ 142 (277)
T PRK09628 68 TTHGRAVAYATGIKLAN----PDKHVIVVSGDGDGLA-IGGNHTIHGCRRNIDLNFILINNFIYGLTNSQTSPTTPKGMW 142 (277)
T ss_pred eccccHHHHHHHHHHHC----CCCeEEEEECchHHHH-hhHHHHHHHHHhCcCeEEEEEEChHHhcceecccCCCCCCce
Confidence 47899999999998884 7899999999999853 112346679999999888877775 665431110
Q ss_pred --------ccCCcCHHHHHhhcCceEE---EEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEe
Q 016903 214 --------QFRSDGAVVKGRAYGVRSI---RVDGNDALAIYSAVHAAREMAIGEGRPILIEALT 266 (380)
Q Consensus 214 --------~~~~~~~~~~a~a~G~~~~---~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t 266 (380)
..+..|+++.|+++|++++ +|. ++.++.+++++|++ .+||+|||+.+
T Consensus 143 ~~~~~~g~~~~~~D~~~lA~a~G~~~va~~~v~--~~~el~~al~~Al~----~~Gp~lIeV~~ 200 (277)
T PRK09628 143 TVTAQYGNIDPTFDACKLATAAGASFVARESVI--DPQKLEKLLVKGFS----HKGFSFFDVFS 200 (277)
T ss_pred eeeccCCCcCCCCCHHHHHHHCCCceEEEEccC--CHHHHHHHHHHHHh----CCCCEEEEEcC
Confidence 0122477999999999985 566 99999999999986 48999999976
No 106
>PRK08527 acetolactate synthase 3 catalytic subunit; Validated
Probab=99.53 E-value=6.4e-14 Score=147.22 Aligned_cols=116 Identities=25% Similarity=0.292 Sum_probs=93.1
Q ss_pred CcccccchHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCC-cccccccc--------
Q 016903 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPIS-------- 212 (380)
Q Consensus 142 ~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~-~~~~~~~~-------- 212 (380)
.|+||+++|.|+|+++|. ++++|||++|||+|++. ..| |.+|.+++||+|+||.||+ |++.....
T Consensus 413 ~g~mG~~l~~aiGa~la~----p~~~vv~i~GDG~f~m~-~~e-L~Ta~~~~lpvi~vV~NN~~~~~i~~~~~~~~~~~~ 486 (563)
T PRK08527 413 LGTMGYGLPAALGAKLAV----PDKVVINFTGDGSILMN-IQE-LMTAVEYKIPVINIILNNNFLGMVRQWQTFFYEERY 486 (563)
T ss_pred cccccchHHHHHHHHHhC----CCCcEEEEecCchhccc-HHH-HHHHHHhCCCeEEEEEECCcchhHHHHHHhhcCCce
Confidence 489999999999999884 57889999999999874 344 9999999999887776665 55432110
Q ss_pred ---cccCCcCHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecC
Q 016903 213 ---DQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRV 269 (380)
Q Consensus 213 ---~~~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t~R~ 269 (380)
......|+.+.|++||+++.+|+ +++++.++++++++ .++|+|||+.+.+.
T Consensus 487 ~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~~----~~~p~lieV~v~~~ 540 (563)
T PRK08527 487 SETDLSTQPDFVKLAESFGGIGFRVT--TKEEFDKALKEALE----SDKVALIDVKIDRF 540 (563)
T ss_pred eeccCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHh----CCCCEEEEEEECCc
Confidence 11123689999999999999998 89999999988875 47999999999763
No 107
>PRK08322 acetolactate synthase; Reviewed
Probab=99.53 E-value=5.2e-14 Score=147.33 Aligned_cols=115 Identities=20% Similarity=0.266 Sum_probs=92.8
Q ss_pred CcccccchHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEc-CCcccccccc--------
Q 016903 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRN-NGWAISTPIS-------- 212 (380)
Q Consensus 142 ~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~N-N~~~~~~~~~-------- 212 (380)
.|+||+++|.|+|+++|. ++++|||++|||+|++. ..+|.+|.++++|+++||.| ++|++.....
T Consensus 405 ~g~mG~~lpaaiGa~la~----p~~~vv~i~GDGsf~m~--~~eL~Ta~~~~lpv~iiV~NN~~~g~~~~~~~~~~~~~~ 478 (547)
T PRK08322 405 LATMGAGLPSAIAAKLVH----PDRKVLAVCGDGGFMMN--SQELETAVRLGLPLVVLILNDNAYGMIRWKQENMGFEDF 478 (547)
T ss_pred cccccchhHHHHHHHHhC----CCCcEEEEEcchhHhcc--HHHHHHHHHhCCCeEEEEEeCCCcchHHHHHHhhcCCcc
Confidence 589999999999999884 78899999999999865 35699999999997776655 5576542110
Q ss_pred -cccCCcCHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeec
Q 016903 213 -DQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 268 (380)
Q Consensus 213 -~~~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t~R 268 (380)
.....+|+++.|++||+++.+|+ +++++.++++++++ .++|+|||+.+.+
T Consensus 479 ~~~~~~~df~~lA~a~G~~~~~v~--~~~eL~~al~~a~~----~~~p~lIev~v~~ 529 (547)
T PRK08322 479 GLDFGNPDFVKYAESYGAKGYRVE--SADDLLPTLEEALA----QPGVHVIDCPVDY 529 (547)
T ss_pred cccCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHh----CCCCEEEEEEecC
Confidence 11124689999999999999998 89999999998875 4799999999854
No 108
>TIGR03457 sulphoacet_xsc sulfoacetaldehyde acetyltransferase. Members of this protein family are sulfoacetaldehyde acetyltransferase, an enzyme of taurine utilization. Taurine, or 2-aminoethanesulfonate, can be used by bacteria as a source of carbon, nitrogen, and sulfur.
Probab=99.53 E-value=5.3e-14 Score=148.33 Aligned_cols=118 Identities=22% Similarity=0.291 Sum_probs=94.3
Q ss_pred CcccccchHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcC-Ccccccccc--------
Q 016903 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN-GWAISTPIS-------- 212 (380)
Q Consensus 142 ~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN-~~~~~~~~~-------- 212 (380)
.|+||+++|.|+|+++|. ++++|||++|||+|++. ..+|.+|.+++||+++||.|| +|++.....
T Consensus 429 ~g~mG~~lpaaiGa~la~----p~~~Vv~i~GDG~f~m~--~~eL~Tavr~~lpvi~vV~NN~~yg~i~~~~~~~~~~~~ 502 (579)
T TIGR03457 429 FGNCGYAFPTIIGAKIAA----PDRPVVAYAGDGAWGMS--MNEIMTAVRHDIPVTAVVFRNRQWGAEKKNQVDFYNNRF 502 (579)
T ss_pred cccccchHHHHHhhhhhC----CCCcEEEEEcchHHhcc--HHHHHHHHHhCCCeEEEEEECcchHHHHHHHHHhhCCcc
Confidence 489999999999999884 68899999999999875 366999999999977766655 476532111
Q ss_pred --cccCC-cCHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeec
Q 016903 213 --DQFRS-DGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 268 (380)
Q Consensus 213 --~~~~~-~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t~R 268 (380)
..... .|+.+.|++||+++.+|+ +++++.+++++|++.. +.++|+|||+.+.+
T Consensus 503 ~~~~~~~~~d~~~lA~a~G~~g~~v~--~~~el~~al~~a~~~~-~~~~p~lieV~v~~ 558 (579)
T TIGR03457 503 VGTELESELSFAGIADAMGAKGVVVD--KPEDVGPALKKAIAAQ-AEGKTTVIEIVCTR 558 (579)
T ss_pred eeccCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHhhC-CCCCcEEEEEEeCC
Confidence 01122 489999999999999998 9999999999998643 24689999999954
No 109
>PRK08155 acetolactate synthase catalytic subunit; Validated
Probab=99.53 E-value=6.1e-14 Score=147.41 Aligned_cols=115 Identities=19% Similarity=0.243 Sum_probs=94.3
Q ss_pred CcccccchHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCC-cccccccc--------
Q 016903 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPIS-------- 212 (380)
Q Consensus 142 ~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~-~~~~~~~~-------- 212 (380)
.|+||+++|.|+|+++|. ++++|||++|||+|++. ..| |.+|.+++||+++||.||+ |++....+
T Consensus 418 ~g~mG~~lpaaiGa~la~----~~~~vv~i~GDGsf~~~-~~e-L~ta~~~~lpvi~vV~NN~~~g~~~~~q~~~~~~~~ 491 (564)
T PRK08155 418 LGTMGFGLPAAIGAALAN----PERKVLCFSGDGSLMMN-IQE-MATAAENQLDVKIILMNNEALGLVHQQQSLFYGQRV 491 (564)
T ss_pred cccccchhHHHHHHHHhC----CCCcEEEEEccchhhcc-HHH-HHHHHHhCCCeEEEEEeCCcccccHHHHHHhcCCCe
Confidence 489999999999999985 67899999999999875 445 9999999999888877776 77643211
Q ss_pred --ccc-CCcCHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeec
Q 016903 213 --DQF-RSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 268 (380)
Q Consensus 213 --~~~-~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t~R 268 (380)
... ...|+++.|++||+++++|+ +++++.++++++++ .++|+|||+.+.+
T Consensus 492 ~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~~----~~~p~lIeV~~~~ 544 (564)
T PRK08155 492 FAATYPGKINFMQIAAGFGLETCDLN--NEADPQAALQEAIN----RPGPALIHVRIDA 544 (564)
T ss_pred eeccCCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHh----CCCCEEEEEEeCC
Confidence 111 24689999999999999999 88999888888875 4799999999954
No 110
>TIGR03254 oxalate_oxc oxalyl-CoA decarboxylase. In a number of bacteria, including Oxalobacter formigenes from the human gut, a two-gene operon of oxc (oxalyl-CoA decarboxylase) and frc (formyl-CoA transferase) encodes a system for degrading and therefore detoxifying oxalate. Members of this family are the thiamine pyrophosphate (TPP)-containing enzyme oxalyl-CoA decarboxylase.
Probab=99.53 E-value=6.1e-14 Score=147.12 Aligned_cols=114 Identities=19% Similarity=0.170 Sum_probs=92.1
Q ss_pred CcccccchHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCC-cccc------c--ccc
Q 016903 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAIS------T--PIS 212 (380)
Q Consensus 142 ~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~-~~~~------~--~~~ 212 (380)
.|+||+++|.|+|+++| ++++||+++|||+|++. ..+|.+|++++||+++||.||+ |... . +..
T Consensus 416 ~gsmG~~lpaaiGaala-----~~~~vv~i~GDGsf~m~--~~EL~Ta~r~~l~v~~vV~NN~~~~~~~~~~~~~~~~~~ 488 (554)
T TIGR03254 416 WGVMGIGMGYAIAAAVE-----TGKPVVALEGDSAFGFS--GMEVETICRYNLPVCVVIFNNGGIYRGDDVNVVGADPAP 488 (554)
T ss_pred CCcCCchHHHHHHHHhc-----CCCcEEEEEcCchhccc--HHHHHHHHHcCCCEEEEEEeChhhhhhhhhhhcCCCCCc
Confidence 48999999999999997 26889999999999875 3559999999999888888886 4111 0 000
Q ss_pred cc-cCCcCHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeec
Q 016903 213 DQ-FRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 268 (380)
Q Consensus 213 ~~-~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t~R 268 (380)
.. ....||+++|++||+++.+|+ +++++.+++++|++ .++|+|||+.+.+
T Consensus 489 ~~~~~~~df~~la~a~G~~~~~v~--~~~el~~al~~a~~----~~~p~lIev~id~ 539 (554)
T TIGR03254 489 TVLVHGARYDKMMKAFGGVGYNVT--TPDELKAALNEALA----SGKPTLINAVIDP 539 (554)
T ss_pred cccCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHh----CCCCEEEEEEECC
Confidence 11 135689999999999999998 99999999998875 4799999999854
No 111
>PRK06466 acetolactate synthase 3 catalytic subunit; Validated
Probab=99.53 E-value=6.2e-14 Score=147.66 Aligned_cols=117 Identities=25% Similarity=0.271 Sum_probs=94.0
Q ss_pred cCcccccchHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCC-ccccccc--------
Q 016903 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPI-------- 211 (380)
Q Consensus 141 ~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~-~~~~~~~-------- 211 (380)
..|+||+++|.|+|+++|. ++++|||++|||+|++. ..+|.+|.+++||+++||.||+ |++....
T Consensus 421 ~~gsmG~glpaAiGa~la~----p~r~Vv~i~GDG~f~m~--~~eL~Ta~r~~lpv~ivV~NN~~y~~i~~~q~~~~~~~ 494 (574)
T PRK06466 421 GLGTMGFGLPAAMGVKLAF----PDQDVACVTGEGSIQMN--IQELSTCLQYGLPVKIINLNNGALGMVRQWQDMQYEGR 494 (574)
T ss_pred CcchhhchHHHHHHHHHhC----CCCeEEEEEcchhhhcc--HHHHHHHHHhCCCeEEEEEeCCccHHHHHHHHHhcCCc
Confidence 3489999999999999884 68899999999999865 3669999999999777776664 6653211
Q ss_pred -ccc--cCCcCHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeec
Q 016903 212 -SDQ--FRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 268 (380)
Q Consensus 212 -~~~--~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t~R 268 (380)
... ....||.+.|++||+++.+|+ ++.++.+++++|++. .++|+|||+.+.+
T Consensus 495 ~~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~el~~al~~a~~~---~~~p~lIev~i~~ 549 (574)
T PRK06466 495 HSHSYMESLPDFVKLAEAYGHVGIRIT--DLKDLKPKLEEAFAM---KDRLVFIDIYVDR 549 (574)
T ss_pred eeecCCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHhc---CCCcEEEEEEeCC
Confidence 111 124689999999999999998 999999999988752 2799999999964
No 112
>PRK05778 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Validated
Probab=99.53 E-value=9.1e-14 Score=134.51 Aligned_cols=134 Identities=16% Similarity=0.154 Sum_probs=97.8
Q ss_pred cccccchHHHHHHHHHhhhcCCCCeeEEEeCcccc-CcchHHHHHHHHHHcCCCEEEEEEcCC-ccccccccc-------
Q 016903 143 STIATQLPHAVGAAYALKMDRKDACAVTYFGDGGT-SEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPISD------- 213 (380)
Q Consensus 143 g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDG~~-~eG~~~Eal~~A~~~~Lpvi~vv~NN~-~~~~~~~~~------- 213 (380)
+++|.++|.|+|+++|. +++.|||+.|||++ +.| ...|.+|+++++|+++||.||+ |++...+..
T Consensus 70 g~mG~alpaAiGaklA~----pd~~VV~i~GDG~~~~mg--~~eL~tA~r~nl~i~vIV~NN~~YG~t~gQ~s~t~~~g~ 143 (301)
T PRK05778 70 TLHGRAIAFATGAKLAN----PDLEVIVVGGDGDLASIG--GGHFIHAGRRNIDITVIVENNGIYGLTKGQASPTTPEGS 143 (301)
T ss_pred hhhccHHHHHHHHHHHC----CCCcEEEEeCccHHHhcc--HHHHHHHHHHCCCcEEEEEeCchhhcccCcccCCcCCCc
Confidence 78899999999998884 78899999999997 455 3459999999999888877775 665432110
Q ss_pred ---------ccCCcCHHHHHhhcCceEE-EEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEee--cCCCCCCCCCCCCC
Q 016903 214 ---------QFRSDGAVVKGRAYGVRSI-RVDGNDALAIYSAVHAAREMAIGEGRPILIEALTY--RVGHHTTSDDSTKY 281 (380)
Q Consensus 214 ---------~~~~~~~~~~a~a~G~~~~-~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t~--R~~gHs~~Dd~~~Y 281 (380)
.....|+..+|+++|+.++ ++.-.++.++.+++++|++ .+||+||++.+- -+++. ....
T Consensus 144 ~~~~~~~g~~~~~~d~~~lA~a~G~~~va~~~v~~~~eL~~ai~~A~~----~~GpalIeV~~~C~~~~~~-----~~~~ 214 (301)
T PRK05778 144 KTKTAPYGNIEPPIDPCALALAAGATFVARSFAGDVKQLVELIKKAIS----HKGFAFIDVLSPCVTFNGR-----NTST 214 (301)
T ss_pred ccccccCCCcCCCCCHHHHHHHCCCCEEEEeccCCHHHHHHHHHHHHh----CCCCEEEEEcCCCCCCCCc-----CCcc
Confidence 0123589999999999987 3344489999999999886 489999997652 12221 2234
Q ss_pred CChhhHHHHH
Q 016903 282 RPVDEIEWWR 291 (380)
Q Consensus 282 r~~~e~~~~~ 291 (380)
+++.++.+|-
T Consensus 215 ~~~~~~~~~~ 224 (301)
T PRK05778 215 KSPAYMREYY 224 (301)
T ss_pred cCHHHHHHHH
Confidence 5666666663
No 113
>TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type. Several isozymes of this enzyme are found in E. coli K12, one of which contains a frameshift in the large subunit gene and is not expressed.
Probab=99.52 E-value=5.2e-14 Score=147.73 Aligned_cols=115 Identities=21% Similarity=0.325 Sum_probs=93.1
Q ss_pred CcccccchHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCC-ccccccc---------
Q 016903 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPI--------- 211 (380)
Q Consensus 142 ~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~-~~~~~~~--------- 211 (380)
.|+||+++|.|+|+++|. ++++|||++|||+|++. . .+|.+|.+++||+++||.||+ |++....
T Consensus 411 ~g~mG~~l~aaiGa~la~----~~~~vv~~~GDG~f~~~-~-~eL~ta~~~~l~~~~vv~NN~~~~~~~~~q~~~~~~~~ 484 (558)
T TIGR00118 411 LGTMGFGLPAAIGAKVAK----PESTVICITGDGSFQMN-L-QELSTAVQYDIPVKILILNNRYLGMVRQWQELFYEERY 484 (558)
T ss_pred cccccchhhHHHhhhhhC----CCCcEEEEEcchHHhcc-H-HHHHHHHHhCCCeEEEEEeCCchHHHHHHHHHhcCCce
Confidence 489999999999998874 67899999999999874 3 469999999999888888776 4432200
Q ss_pred -c-cccCCcCHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeec
Q 016903 212 -S-DQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 268 (380)
Q Consensus 212 -~-~~~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t~R 268 (380)
. ......|+.+++++||+++++|+ +++++.++++++++ .++|+|||+.+.+
T Consensus 485 ~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~~l~~al~~a~~----~~~p~liev~~~~ 537 (558)
T TIGR00118 485 SHTHMGSLPDFVKLAEAYGIKGIRIE--KPEELDEKLKEALS----SNEPVLLDVVVDK 537 (558)
T ss_pred eeccCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHh----CCCCEEEEEEeCC
Confidence 0 11124689999999999999999 78999999998886 3799999999964
No 114
>PRK08611 pyruvate oxidase; Provisional
Probab=99.52 E-value=7e-14 Score=147.35 Aligned_cols=115 Identities=23% Similarity=0.273 Sum_probs=92.9
Q ss_pred CcccccchHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcC-Cccccccc---------
Q 016903 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN-GWAISTPI--------- 211 (380)
Q Consensus 142 ~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN-~~~~~~~~--------- 211 (380)
.|+||+++|.|+|+++|. +++.|||++|||+|++. ..+|.+|++++||+++||.|| +|++....
T Consensus 407 ~g~mG~glpaaiGa~la~----p~~~Vv~i~GDGsf~m~--~~eL~Ta~r~~l~~iivV~NN~~~g~i~~~q~~~~~~~~ 480 (576)
T PRK08611 407 LGTMGCGLPGAIAAKIAF----PDRQAIAICGDGGFSMV--MQDFVTAVKYKLPIVVVVLNNQQLAFIKYEQQAAGELEY 480 (576)
T ss_pred chhhhhhHHHHHHHHHhC----CCCcEEEEEcccHHhhh--HHHHHHHHHhCCCeEEEEEeCCcchHHHHHHHHhcCCcc
Confidence 589999999999999874 68899999999999865 466999999999976666555 57653211
Q ss_pred ccccCCcCHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeec
Q 016903 212 SDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 268 (380)
Q Consensus 212 ~~~~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t~R 268 (380)
.......|+++.|++||+++.+|+ +++++..+++++++ .++|+|||+.+.+
T Consensus 481 ~~~~~~~d~~~lA~a~G~~~~~v~--~~~eL~~al~~a~~----~~~p~lIeV~vd~ 531 (576)
T PRK08611 481 AIDLSDMDYAKFAEACGGKGYRVE--KAEELDPAFEEALA----QDKPVIIDVYVDP 531 (576)
T ss_pred cccCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHh----CCCCEEEEEEeCC
Confidence 011234689999999999999998 89999999988875 4899999999965
No 115
>PRK06048 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=99.52 E-value=1.2e-13 Score=145.13 Aligned_cols=115 Identities=25% Similarity=0.343 Sum_probs=93.1
Q ss_pred CcccccchHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCC-ccccccc---------
Q 016903 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPI--------- 211 (380)
Q Consensus 142 ~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~-~~~~~~~--------- 211 (380)
.|+||+++|.|+|+++|. ++++|||++|||+|++. ..+|.+|.+++||+++||.||+ |++....
T Consensus 413 ~g~mG~glpaaiGa~la~----p~~~Vv~i~GDG~f~m~--~~eL~Ta~~~~l~i~~vV~NN~~y~~i~~~~~~~~~~~~ 486 (561)
T PRK06048 413 LGTMGYGFPAAIGAKVGK----PDKTVIDIAGDGSFQMN--SQELATAVQNDIPVIVAILNNGYLGMVRQWQELFYDKRY 486 (561)
T ss_pred ccccccHHHHHHHHHHhC----CCCcEEEEEeCchhhcc--HHHHHHHHHcCCCeEEEEEECCccHHHHHHHHHHcCCcc
Confidence 489999999999999884 67899999999999875 3569999999999777666664 6543210
Q ss_pred ccc--cCCcCHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeec
Q 016903 212 SDQ--FRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 268 (380)
Q Consensus 212 ~~~--~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t~R 268 (380)
... ....|+.+.|++||+++.+|+ ++.++.+++++|++ .++|+|||+.+.+
T Consensus 487 ~~~~~~~~~d~~~lA~a~G~~~~~v~--t~~el~~al~~a~~----~~~p~liev~~~~ 539 (561)
T PRK06048 487 SHTCIKGSVDFVKLAEAYGALGLRVE--KPSEVRPAIEEAVA----SDRPVVIDFIVEC 539 (561)
T ss_pred cccCCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHh----CCCCEEEEEEecC
Confidence 011 134689999999999999998 89999999999875 4799999999965
No 116
>TIGR03394 indol_phenyl_DC indolepyruvate/phenylpyruvate decarboxylase, Azospirillum family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. This model represents a clade that includes a Azospirillum brasilense member active as both phenylpyruvate decarboxylase and indolepyruvate decarboxylase.
Probab=99.50 E-value=7.8e-14 Score=145.71 Aligned_cols=114 Identities=21% Similarity=0.216 Sum_probs=90.5
Q ss_pred CcccccchHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcC-Ccccccccc-----ccc
Q 016903 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN-GWAISTPIS-----DQF 215 (380)
Q Consensus 142 ~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN-~~~~~~~~~-----~~~ 215 (380)
.|+||+++|.|+|+++|. ++++|+++|||+|++. ..+|.+|.+++||+++||.|| +|++..... ...
T Consensus 402 ~g~mG~glpaaiGa~lA~-----~~r~v~i~GDG~f~m~--~~EL~Ta~r~~lpv~~vV~NN~~y~~~~~~~~~~~~~~~ 474 (535)
T TIGR03394 402 YAGMGFGVPAGIGAQCTS-----GKRILTLVGDGAFQMT--GWELGNCRRLGIDPIVILFNNASWEMLRVFQPESAFNDL 474 (535)
T ss_pred cchhhhHHHHHHHHHhCC-----CCCeEEEEeChHHHhH--HHHHHHHHHcCCCcEEEEEECCccceeehhccCCCcccC
Confidence 589999999999999884 3456889999999853 466999999999977766655 577543221 122
Q ss_pred CCcCHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEee
Q 016903 216 RSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTY 267 (380)
Q Consensus 216 ~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t~ 267 (380)
...|+++.|++||+++.+|+ ++.++..++++|++. .++|+|||+.+.
T Consensus 475 ~~~d~~~lA~a~G~~~~~v~--~~~eL~~al~~a~~~---~~~p~lIev~i~ 521 (535)
T TIGR03394 475 DDWRFADMAAGMGGDGVRVR--TRAELAAALDKAFAT---RGRFQLIEAMLP 521 (535)
T ss_pred CCCCHHHHHHHcCCCceEeC--CHHHHHHHHHHHHhc---CCCeEEEEEECC
Confidence 34689999999999999999 899999999998852 356899999873
No 117
>PRK09259 putative oxalyl-CoA decarboxylase; Validated
Probab=99.50 E-value=1.5e-13 Score=144.61 Aligned_cols=114 Identities=18% Similarity=0.123 Sum_probs=92.4
Q ss_pred CcccccchHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCC-ccccc--------c-c
Q 016903 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAIST--------P-I 211 (380)
Q Consensus 142 ~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~-~~~~~--------~-~ 211 (380)
.|+||+++|.|+|+++| ++++|||++|||+|++. ..+|.+|++++||+++||.||+ |-... . .
T Consensus 423 ~gsmG~glpaaiGa~la-----~~~~vv~i~GDG~f~m~--~~EL~Ta~r~~lpi~~vV~NN~~~~~~~~~~~~~~~~~~ 495 (569)
T PRK09259 423 WGVMGIGMGYAIAAAVE-----TGKPVVAIEGDSAFGFS--GMEVETICRYNLPVTVVIFNNGGIYRGDDVNLSGAGDPS 495 (569)
T ss_pred CccccccHHHHHHHHhc-----CCCcEEEEecCcccccc--HHHHHHHHHcCCCEEEEEEeChhHHHHHHHHhhcCCCcc
Confidence 58999999999999988 26789999999999865 3559999999999999888887 31110 0 0
Q ss_pred ccc-cCCcCHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeec
Q 016903 212 SDQ-FRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 268 (380)
Q Consensus 212 ~~~-~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t~R 268 (380)
... .+..|+++.|++||+++++|+ +++++.+++++|++ .++|+|||+.+.+
T Consensus 496 ~~~~~~~~d~~~lA~a~G~~~~~v~--~~~el~~al~~a~~----~~~p~lIev~id~ 547 (569)
T PRK09259 496 PTVLVHHARYDKMMEAFGGVGYNVT--TPDELRHALTEAIA----SGKPTLINVVIDP 547 (569)
T ss_pred ccccCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHh----CCCCEEEEEEECC
Confidence 011 135689999999999999998 89999999999875 4799999999854
No 118
>PRK08978 acetolactate synthase 2 catalytic subunit; Reviewed
Probab=99.50 E-value=1.6e-13 Score=143.87 Aligned_cols=115 Identities=19% Similarity=0.235 Sum_probs=93.0
Q ss_pred CcccccchHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcC-Cccccccc---------
Q 016903 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN-GWAISTPI--------- 211 (380)
Q Consensus 142 ~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN-~~~~~~~~--------- 211 (380)
.|+||+++|.|+|+++|. ++++|||++|||+|++. ..+|.+|.++++|+++||.|| +|++....
T Consensus 400 ~g~mG~glpaAiGa~la~----p~~~vv~i~GDG~f~~~--~~eL~ta~~~~l~v~ivV~NN~~~~~~~~~~~~~~~~~~ 473 (548)
T PRK08978 400 LGTMGFGLPAAIGAQVAR----PDDTVICVSGDGSFMMN--VQELGTIKRKQLPVKIVLLDNQRLGMVRQWQQLFFDERY 473 (548)
T ss_pred hhhhhchHHHHHHHHHhC----CCCcEEEEEccchhhcc--HHHHHHHHHhCCCeEEEEEeCCccHHHHHHHHHHhCCcc
Confidence 489999999999999884 68899999999999865 356999999999977766655 56643211
Q ss_pred c-ccc-CCcCHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeec
Q 016903 212 S-DQF-RSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 268 (380)
Q Consensus 212 ~-~~~-~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t~R 268 (380)
. ... ...|+++.|++||+++.+|+ +++++.++++++++ .++|+|||+.+.+
T Consensus 474 ~~~~~~~~~d~~~la~a~G~~~~~v~--~~~el~~al~~a~~----~~~p~lIeV~id~ 526 (548)
T PRK08978 474 SETDLSDNPDFVMLASAFGIPGQTIT--RKDQVEAALDTLLN----SEGPYLLHVSIDE 526 (548)
T ss_pred eecCCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHh----CCCCEEEEEEecC
Confidence 0 011 23689999999999999998 99999999998875 4799999999965
No 119
>PRK11869 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional
Probab=99.48 E-value=2.3e-13 Score=130.27 Aligned_cols=115 Identities=10% Similarity=0.078 Sum_probs=89.4
Q ss_pred cccccchHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCC-cccccccc---------
Q 016903 143 STIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPIS--------- 212 (380)
Q Consensus 143 g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~-~~~~~~~~--------- 212 (380)
+.+|.++|.|+|+++| .+++.|||+.|||++.... ...|.+|+++++|+++||.||+ |++...+.
T Consensus 60 ~~mG~alp~AiGaklA----~pd~~VVai~GDG~~~~iG-~~eL~tA~r~nl~i~~IV~NN~~Yg~t~~Q~s~~t~~g~~ 134 (280)
T PRK11869 60 TLHGRAIPAATAVKAT----NPELTVIAEGGDGDMYAEG-GNHLIHAIRRNPDITVLVHNNQVYGLTKGQASPTTLKGFK 134 (280)
T ss_pred cccccHHHHHHHHHHH----CCCCcEEEEECchHHhhCc-HHHHHHHHHhCcCcEEEEEECHHHhhhcceecCCCCCCcc
Confidence 5589999999999877 4789999999999986211 3559999999999988888776 55432111
Q ss_pred -------cccCCcCHHHHHhhcCceEEEE-eCCCHHHHHHHHHHHHHHhhccCCcEEEEEEe
Q 016903 213 -------DQFRSDGAVVKGRAYGVRSIRV-DGNDALAIYSAVHAAREMAIGEGRPILIEALT 266 (380)
Q Consensus 213 -------~~~~~~~~~~~a~a~G~~~~~V-dG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t 266 (380)
......|+.++|+++|++++.. +-.++.++.+++++|++ .+||+||++.+
T Consensus 135 ~~~~p~g~~~~~~D~~~lA~a~G~~~va~~~~~~~~~l~~~i~~Al~----~~Gp~lIeV~~ 192 (280)
T PRK11869 135 TPTQPWGVFEEPFNPIALAIALDASFVARTFSGDIEETKEILKEAIK----HKGLAIVDIFQ 192 (280)
T ss_pred cccCCCCccCCCCCHHHHHHHCCCCEEEEeCCCCHHHHHHHHHHHHh----CCCCEEEEEEC
Confidence 0112358999999999998872 24499999999999996 48999999976
No 120
>PRK07449 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase; Validated
Probab=99.47 E-value=9.1e-14 Score=146.17 Aligned_cols=112 Identities=21% Similarity=0.153 Sum_probs=89.3
Q ss_pred CcccccchHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCC-ccccccc----c----
Q 016903 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPI----S---- 212 (380)
Q Consensus 142 ~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~-~~~~~~~----~---- 212 (380)
.++||+++|.|+|+++| ++++|||++|||+|++.. .+|.+|+++++|+++||.||+ |++.... .
T Consensus 424 ~~~~G~~lpaaiGaala-----~~~~vv~i~GDGsf~~~~--~eL~Ta~r~~l~i~ivVlNN~g~~~~~~~~~~~~~~~~ 496 (568)
T PRK07449 424 ASGIDGLLSTAAGVARA-----SAKPTVALIGDLSFLHDL--NGLLLLKQVPAPLTIVVVNNNGGGIFSLLPQPEEEPVF 496 (568)
T ss_pred ccchhhHHHHHHHHHhc-----CCCCEEEEechHHhhcCc--HHHHhhcccCCCeEEEEEECCCCccccCCCCCCCcchh
Confidence 36799999999999887 377899999999998653 559999999999777776665 6632111 0
Q ss_pred ----cccCCcCHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEe
Q 016903 213 ----DQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALT 266 (380)
Q Consensus 213 ----~~~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t 266 (380)
......|+++.|++||+++.+|+ +++++.+++++|++ .++|+|||+.+
T Consensus 497 ~~~~~~~~~~df~~lA~a~G~~~~~V~--~~~eL~~al~~a~~----~~~p~lIev~i 548 (568)
T PRK07449 497 ERFFGTPHGVDFAHAAAMYGLEYHRPE--TWAELEEALADALP----TPGLTVIEVKT 548 (568)
T ss_pred hHhhcCCCCCCHHHHHHHcCCCccCCC--CHHHHHHHHHHHhc----CCCCEEEEEeC
Confidence 01124689999999999999998 89999999999874 47999999987
No 121
>PRK06276 acetolactate synthase catalytic subunit; Reviewed
Probab=99.47 E-value=3.2e-13 Score=142.60 Aligned_cols=115 Identities=26% Similarity=0.348 Sum_probs=92.8
Q ss_pred CcccccchHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCC-ccccccc---------
Q 016903 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPI--------- 211 (380)
Q Consensus 142 ~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~-~~~~~~~--------- 211 (380)
.|+||+++|.|+|+++|. +++.|||++|||+|++. ..+|.+|.+++||+++||.||+ |++....
T Consensus 418 ~gsmG~~lpaaiGa~la~----p~~~Vv~i~GDGsf~m~--~~eL~Ta~~~~lpv~~vV~NN~~~g~~~~~~~~~~~~~~ 491 (586)
T PRK06276 418 LGTMGFGFPAAIGAKVAK----PDANVIAITGDGGFLMN--SQELATIAEYDIPVVICIFDNRTLGMVYQWQNLYYGKRQ 491 (586)
T ss_pred ccccccchhHHHhhhhhc----CCCcEEEEEcchHhhcc--HHHHHHHHHhCCCeEEEEEeCCchHHHHHHHHHHhCCCc
Confidence 489999999999999884 67889999999999865 3569999999999877776665 6653211
Q ss_pred ccc-c-CCcCHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeec
Q 016903 212 SDQ-F-RSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 268 (380)
Q Consensus 212 ~~~-~-~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t~R 268 (380)
... . ...|+.+.+++||+++.+|+ +++++..+++++++ .++|+|||+.+.+
T Consensus 492 ~~~~~~~~~d~~~la~a~G~~~~~v~--~~~el~~al~~a~~----~~~p~lIeV~i~~ 544 (586)
T PRK06276 492 SEVHLGETPDFVKLAESYGVKADRVE--KPDEIKEALKEAIK----SGEPYLLDIIIDP 544 (586)
T ss_pred ccccCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHh----CCCCEEEEEEecc
Confidence 001 1 24689999999999999998 99999999998875 4799999999854
No 122
>PRK07789 acetolactate synthase 1 catalytic subunit; Validated
Probab=99.46 E-value=1.7e-13 Score=145.33 Aligned_cols=116 Identities=22% Similarity=0.303 Sum_probs=92.6
Q ss_pred CcccccchHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcC-Ccccccccc--------
Q 016903 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN-GWAISTPIS-------- 212 (380)
Q Consensus 142 ~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN-~~~~~~~~~-------- 212 (380)
.|+||+++|.|+|+++|. +++.|+|++|||+|++. ..+|.+|++++||+++||.|| +|++....+
T Consensus 446 ~G~mG~glpaaiGa~la~----p~~~Vv~i~GDG~f~m~--~~eL~Ta~~~~lpv~ivV~NN~~~g~i~~~q~~~~~~~~ 519 (612)
T PRK07789 446 LGTMGYAVPAAMGAKVGR----PDKEVWAIDGDGCFQMT--NQELATCAIEGIPIKVALINNGNLGMVRQWQTLFYEERY 519 (612)
T ss_pred cccccchhhhHHhhhccC----CCCcEEEEEcchhhhcc--HHHHHHHHHcCCCeEEEEEECCchHHHHHHHHHhhCCCc
Confidence 478999999999998884 68899999999999864 467999999999977766655 476532110
Q ss_pred --ccc-----CCcCHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeec
Q 016903 213 --DQF-----RSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 268 (380)
Q Consensus 213 --~~~-----~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t~R 268 (380)
... ...|+++.|++||+++.+|+ +++++..++++|++. .++|+|||+.+.+
T Consensus 520 ~~~~~~~~~~~~~d~~~lA~a~G~~~~~V~--~~~eL~~al~~a~~~---~~~p~lIev~i~~ 577 (612)
T PRK07789 520 SNTDLHTHSHRIPDFVKLAEAYGCVGLRCE--REEDVDAVIEKARAI---NDRPVVIDFVVGK 577 (612)
T ss_pred ceeecCcCCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHhc---CCCcEEEEEEECC
Confidence 000 12589999999999999998 999999999998863 3689999999964
No 123
>PRK07282 acetolactate synthase catalytic subunit; Reviewed
Probab=99.46 E-value=2e-13 Score=143.61 Aligned_cols=114 Identities=24% Similarity=0.373 Sum_probs=90.4
Q ss_pred CcccccchHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcC-Cccccccc---------
Q 016903 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN-GWAISTPI--------- 211 (380)
Q Consensus 142 ~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN-~~~~~~~~--------- 211 (380)
.|+||+++|.|+|+++|. +++.|||++|||+|++. ..+|.+|.+++||+++||.|| +|++....
T Consensus 417 ~g~mG~glpaaiGa~lA~----p~~~Vv~i~GDG~f~m~--~~eL~Ta~~~~l~i~~vV~NN~~y~~i~~~q~~~~~~~~ 490 (566)
T PRK07282 417 LGTMGFGIPAAIGAKIAN----PDKEVILFVGDGGFQMT--NQELAILNIYKVPIKVVMLNNHSLGMVRQWQESFYEGRT 490 (566)
T ss_pred cccccchhhHhheeheec----CCCcEEEEEcchhhhcc--HHHHHHHHHhCCCeEEEEEeCCCchHHHHHHHHHhCCCc
Confidence 589999999999998874 78899999999999865 356999999999977766655 47653211
Q ss_pred c-ccc-CCcCHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeec
Q 016903 212 S-DQF-RSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 268 (380)
Q Consensus 212 ~-~~~-~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t~R 268 (380)
. ... ...||++.|++||+++.+|+ ++.++.++++ +.. .++|+|||+.+.+
T Consensus 491 ~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~el~~al~-~~~----~~~p~lIeV~v~~ 542 (566)
T PRK07282 491 SESVFDTLPDFQLMAQAYGIKHYKFD--NPETLAQDLE-VIT----EDVPMLIEVDISR 542 (566)
T ss_pred ccccCCCCCCHHHHHHHCCCEEEEEC--CHHHHHHHHH-Hhc----CCCCEEEEEEeCC
Confidence 1 112 34689999999999999998 8999988886 332 4799999999965
No 124
>PRK11866 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional
Probab=99.44 E-value=8e-13 Score=126.62 Aligned_cols=115 Identities=20% Similarity=0.241 Sum_probs=90.6
Q ss_pred CcccccchHHHHHHHHHhhhcCCCCeeEEEeCcc-ccCcchHHHHHHHHHHcCCCEEEEEEcCC-ccccccccccc----
Q 016903 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDG-GTSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPISDQF---- 215 (380)
Q Consensus 142 ~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDG-~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~-~~~~~~~~~~~---- 215 (380)
.+++|.++|.|+|+++|. ++..||+++||| ++..|. ..|.+|+++++|+++||.||+ |++...+...+
T Consensus 58 ~~~~G~alp~A~GaklA~----Pd~~VV~i~GDG~~f~ig~--~eL~tA~rrn~~i~vIV~nN~~ygmtggQ~s~~t~~g 131 (279)
T PRK11866 58 HGIHGRVLPIATGVKWAN----PKLTVIGYGGDGDGYGIGL--GHLPHAARRNVDITYIVSNNQVYGLTTGQASPTTPRG 131 (279)
T ss_pred ccccccHHHHHHHHHHHC----CCCcEEEEECChHHHHccH--HHHHHHHHHCcCcEEEEEEChhhhhhcccccCCCCCC
Confidence 578899999999998884 788999999999 688773 559999999999888887775 55543211100
Q ss_pred ------------CCcCHHHHHhhcCceEEE-EeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEe
Q 016903 216 ------------RSDGAVVKGRAYGVRSIR-VDGNDALAIYSAVHAAREMAIGEGRPILIEALT 266 (380)
Q Consensus 216 ------------~~~~~~~~a~a~G~~~~~-VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t 266 (380)
...|+.+.|+++|++.+. ....++.++.+++++|++ .+||.||++..
T Consensus 132 ~~t~~t~~g~~~~~~d~~~iA~a~G~~~Va~~~~~~~~~l~~~l~~Al~----~~Gps~I~v~~ 191 (279)
T PRK11866 132 VKTKTTPDGNIEEPFNPIALALAAGATFVARGFSGDVKHLKEIIKEAIK----HKGFSFIDVLS 191 (279)
T ss_pred ceeeccCCCCCCCCCCHHHHHHHCCCCEEEEEcCCCHHHHHHHHHHHHh----CCCCEEEEEeC
Confidence 012899999999998665 455799999999999986 48999999875
No 125
>PRK11867 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Reviewed
Probab=99.43 E-value=9.6e-13 Score=126.77 Aligned_cols=115 Identities=17% Similarity=0.139 Sum_probs=88.5
Q ss_pred CcccccchHHHHHHHHHhhhcCCCCeeEEEeCccc-cCcchHHHHHHHHHHcCCCEEEEEEcCC-ccccccccc------
Q 016903 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGG-TSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPISD------ 213 (380)
Q Consensus 142 ~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDG~-~~eG~~~Eal~~A~~~~Lpvi~vv~NN~-~~~~~~~~~------ 213 (380)
.+++|.++|.|+|+++| .+++.|||+.|||+ ++.|. ..|.+|+++++|+++||.||+ |++...+..
T Consensus 68 ~g~mG~alpaAiGaklA----~Pd~~VV~i~GDG~~f~mg~--~eL~tA~r~nl~i~vIV~NN~~yGmt~~q~s~tt~~g 141 (286)
T PRK11867 68 HTIHGRALAIATGLKLA----NPDLTVIVVTGDGDALAIGG--NHFIHALRRNIDITYILFNNQIYGLTKGQYSPTSPVG 141 (286)
T ss_pred hhhhhcHHHHHHHHHHh----CCCCcEEEEeCccHHHhCCH--HHHHHHHHhCCCcEEEEEeCHHHhhhcCccCCCCCCC
Confidence 37899999999999888 47899999999996 77663 458999999999888777665 665432110
Q ss_pred -c---------cCCcCHHHHHhhcCceEEE-EeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEe
Q 016903 214 -Q---------FRSDGAVVKGRAYGVRSIR-VDGNDALAIYSAVHAAREMAIGEGRPILIEALT 266 (380)
Q Consensus 214 -~---------~~~~~~~~~a~a~G~~~~~-VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t 266 (380)
. ....++.++|.++|...+. +.-.++.++.+++++|++ .+||+|||+.+
T Consensus 142 ~~~~~~~~g~~~~~~d~~~lA~a~Ga~~va~~~~~~~~el~~al~~Al~----~~Gp~lIev~~ 201 (286)
T PRK11867 142 FVTKTTPYGSIEPPFNPVELALGAGATFVARGFDSDVKQLTELIKAAIN----HKGFSFVEILQ 201 (286)
T ss_pred cccccccCCCCCCCCCHHHHHHHCCCcEEEEecCCCHHHHHHHHHHHHh----CCCCEEEEEeC
Confidence 0 0124788999999998764 344589999999999886 48999999975
No 126
>TIGR02177 PorB_KorB 2-oxoacid:acceptor oxidoreductase, beta subunit, pyruvate/2-ketoisovalerate family. Several related four-subunit enzymes may exist in the same species. This model describes a subfamily of beta subunits, representing mostly pyruvate and 2-ketoisovalerate specific enzymes.
Probab=99.41 E-value=9.2e-13 Score=126.58 Aligned_cols=113 Identities=14% Similarity=0.155 Sum_probs=85.3
Q ss_pred cccccchHHHHHHHHHhhhcCCCCeeEEEeCcccc-CcchHHHHHHHHHHcCCCEEEEEEcCC-ccccccccccc-----
Q 016903 143 STIATQLPHAVGAAYALKMDRKDACAVTYFGDGGT-SEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPISDQF----- 215 (380)
Q Consensus 143 g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDG~~-~eG~~~Eal~~A~~~~Lpvi~vv~NN~-~~~~~~~~~~~----- 215 (380)
+.+|.++|.|+|+++| .+++.|||+.|||++ .+| ...|.+|+++++|+++||.||+ |++...+...+
T Consensus 53 t~mG~alPaAiGaklA----~Pd~~VVai~GDG~f~~mg--~~eL~tA~r~nl~I~vIVlNN~~yGmt~gQ~sp~t~~G~ 126 (287)
T TIGR02177 53 GLHGRALPVATGIKLA----NPHLKVIVVGGDGDLYGIG--GNHFVAAGRRNVDITVIVHDNQVYGLTKGQASPTLLKGV 126 (287)
T ss_pred cccccHHHHHHHHHHH----CCCCcEEEEeCchHHHhcc--HHHHHHHHHhCcCeEEEEEECHHHHhhhcccccCccCCc
Confidence 5579999999999887 478999999999997 355 3559999999999888887775 55543221100
Q ss_pred -------------CCcCHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEe
Q 016903 216 -------------RSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALT 266 (380)
Q Consensus 216 -------------~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t 266 (380)
..+++..+|.++|+.+...- .++.++.+++++|++ .+||+||++.+
T Consensus 127 ~~~~~~~g~~~~~~np~~~a~A~g~g~va~~~~-~~~~eL~~ai~~Al~----~~GpslIeV~~ 185 (287)
T TIGR02177 127 KTKSLPYPNIQDPVNPLLLAIALGYTFVARGFS-GDVAHLKEIIKEAIN----HKGYALVDILQ 185 (287)
T ss_pred ceeecccCccCCCCCHHHHHHhCCCCeEEEEec-CCHHHHHHHHHHHHh----CCCCEEEEEeC
Confidence 02246677888887777632 489999999999986 48999999975
No 127
>TIGR03336 IOR_alpha indolepyruvate ferredoxin oxidoreductase, alpha subunit. Indolepyruvate ferredoxin oxidoreductase (IOR) is an alpha 2/beta 2 tetramer related to ketoacid oxidoreductases for pyruvate (1.2.7.1, POR), 2-ketoglutarate (1.2.7.3, KOR), and 2-oxoisovalerate (1.2.7.7, VOR). These multi-subunit enzymes typically are found in anaerobes and are inactiviated by oxygen. IOR in Pyrococcus acts in fermentation of all three aromatic amino acids, following removal of the amino group by transamination. In Methanococcus maripaludis, by contrast, IOR acts in the opposite direction, in pathways of amino acid biosynthesis from phenylacetate, indoleacetate, and p-hydroxyphenylacetate. In M. maripaludis and many other species, iorA and iorB are found next to an apparent phenylacetate-CoA ligase.
Probab=99.37 E-value=4.2e-12 Score=134.25 Aligned_cols=120 Identities=16% Similarity=0.082 Sum_probs=91.0
Q ss_pred ccccCcccccchHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcC-Cccccccccc---
Q 016903 138 YFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN-GWAISTPISD--- 213 (380)
Q Consensus 138 ~~~~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN-~~~~~~~~~~--- 213 (380)
.....++||.++|.|+|+++|. ++++||+++|||+|..... .+|.+|.++++|+++||.|| .|++...+..
T Consensus 398 ~~~~~~~mG~~~~~AiGa~~a~----p~~~Vv~i~GDG~f~~~g~-~eL~tav~~~~~i~~vVlnN~~~g~~~~q~~~~~ 472 (595)
T TIGR03336 398 TVDTTLCMGASIGVASGLSKAG----EKQRIVAFIGDSTFFHTGI-PGLINAVYNKANITVVILDNRITAMTGHQPNPGT 472 (595)
T ss_pred ccceeeccCchHHHHhhhhhcC----CCCCEEEEeccchhhhcCH-HHHHHHHHcCCCeEEEEEcCcceeccCCCCCCCC
Confidence 3344689999999999998873 6789999999999975323 45889999999988877666 5776542211
Q ss_pred -------ccCCcCHHHHHhhcCceEEEEeC-CCHHHHHHHHHHHHHHhhccCCcEEEEEEe
Q 016903 214 -------QFRSDGAVVKGRAYGVRSIRVDG-NDALAIYSAVHAAREMAIGEGRPILIEALT 266 (380)
Q Consensus 214 -------~~~~~~~~~~a~a~G~~~~~VdG-~D~~av~~a~~~a~~~ar~~~gP~lIe~~t 266 (380)
.....|+.+.++++|+++++|.- .+..++.++++++++ .++|++|++..
T Consensus 473 ~~~~~~~~~~~~d~~~ia~a~G~~~~~v~~~~~l~~l~~al~~a~~----~~gp~li~v~~ 529 (595)
T TIGR03336 473 GVTGMGEATKEISIEELCRASGVEFVEVVDPLNVKETIEVFKAALA----AEGVSVIIAKQ 529 (595)
T ss_pred CCCCCCCcCCCcCHHHHHHHcCCCEEEEeCcCCHHHHHHHHHHHHh----cCCCEEEEEcc
Confidence 01246899999999999999863 455667888888875 47999999854
No 128
>PRK11865 pyruvate ferredoxin oxidoreductase subunit beta; Provisional
Probab=99.31 E-value=1.1e-10 Score=112.65 Aligned_cols=126 Identities=18% Similarity=0.169 Sum_probs=99.6
Q ss_pred CCccccCcccccchHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCC-ccccccccc-
Q 016903 136 HNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPISD- 213 (380)
Q Consensus 136 ~~~~~~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~-~~~~~~~~~- 213 (380)
.+.....+.+|.+.++|.|++.|.+..+++..||++.|||++..-.+ ++|.-|...+.|+++||.||. |+.++-+..
T Consensus 62 ~~~~~~~~~fg~~~a~a~Gi~~a~~~~~~~~~Vv~~~GDG~~~dIG~-~~L~~a~~r~~ni~~ivlDNe~Y~nTGgQ~S~ 140 (299)
T PRK11865 62 WNVPWIHVAFENAAAVASGIERAVKALGKKVNVVAIGGDGGTADIGF-QSLSGAMERGHNILYLMYDNEAYMNTGIQRSG 140 (299)
T ss_pred cccccchhhhcchHHHHHHHHHHHHHhcCCCeEEEEeCCchHhhccH-HHHHHHHHcCCCeEEEEECCccccCCCCCCCC
Confidence 34556678999999999999999887677789999999999843323 779999999999999999887 443322111
Q ss_pred --------------------ccCCcCHHHHHhhcCceEE-EEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEe
Q 016903 214 --------------------QFRSDGAVVKGRAYGVRSI-RVDGNDALAIYSAVHAAREMAIGEGRPILIEALT 266 (380)
Q Consensus 214 --------------------~~~~~~~~~~a~a~G~~~~-~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t 266 (380)
.....|+..++.++|++.+ +++-.++.++.+++++|.+ .+||.||++.+
T Consensus 141 ~Tp~Ga~t~tsp~Gk~~~G~~~~kkd~~~Ia~a~g~~YVA~~~~~~~~~l~~~i~~A~~----~~Gps~I~v~s 210 (299)
T PRK11865 141 STPFGASTTTSPAGKYSRGEDRPKKNMPLIMAAHGIPYVATASIGYPEDFMEKVKKAKE----VEGPAYIQVLQ 210 (299)
T ss_pred CCCCCcccccCCCCcccCCCCCCCCCHHHHHHHcCCCEEEEEeCCCHHHHHHHHHHHHh----CCCCEEEEEEC
Confidence 1224578899999999877 5777899999999999986 48999999875
No 129
>COG3961 Pyruvate decarboxylase and related thiamine pyrophosphate-requiring enzymes [Carbohydrate transport and metabolism / Coenzyme metabolism / General function prediction only]
Probab=99.31 E-value=1.9e-11 Score=122.99 Aligned_cols=163 Identities=20% Similarity=0.256 Sum_probs=114.5
Q ss_pred chhhHHHHHHHhcCCCCcEEEcccccHHHHHHcCCCHHHHHHHhhcCCCCCCCCCCCccccCCCCCCc--cccCcccccc
Q 016903 71 SGEEAINIASAAAIKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNY--FTVSSTIATQ 148 (380)
Q Consensus 71 ~G~Ea~~~~~~~~l~~~D~v~~~yR~~~~~l~~G~~~~~~~~e~~g~~~~~~~G~~~~~H~~~~~~~~--~~~~g~lG~~ 148 (380)
+-||-..-.++..|+++|+|+.- .|- .+||- ... .......+ .+-.|++|+.
T Consensus 363 Ltq~~~w~~~~~fl~p~dviiae-tGt---------------S~FG~-------~~~---~lP~~~~~i~Q~lWGSIG~t 416 (557)
T COG3961 363 LTQEWLWNTVQNFLKPGDVIIAE-TGT---------------SFFGA-------LDI---RLPKGATFISQPLWGSIGYT 416 (557)
T ss_pred ccHHHHHHHHHhhCCCCCEEEEc-ccc---------------ccccc-------eee---ecCCCCeEEcccchhhcccc
Confidence 55677777788899999999863 111 13331 111 11111222 3347999999
Q ss_pred hHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCC-CEEEEEEcCCccccccccccc------CCcCHH
Q 016903 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEA-PVIFICRNNGWAISTPISDQF------RSDGAV 221 (380)
Q Consensus 149 lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~L-pvi~vv~NN~~~~~~~~~~~~------~~~~~~ 221 (380)
+|.|+|+++|. +++++|.|+||||+|. .-+++.+-.+|+| |+|||++|++|.|........ ..-++.
T Consensus 417 ~pAalGa~~A~----~drR~IL~iGDGs~Ql--TvQEiStmiR~gl~p~ifvlNN~GYTIEr~IHg~~~~YNdI~~Wd~~ 490 (557)
T COG3961 417 LPAALGAALAA----PDRRVILFIGDGSLQL--TVQEISTMIRWGLKPIIFVLNNDGYTIERAIHGPTAPYNDIQSWDYT 490 (557)
T ss_pred cHhhhhhhhcC----CCccEEEEEcCchhhh--hHHHHHHHHHcCCCcEEEEEcCCCcEEEehhcCCCcCcccccccchh
Confidence 99999999996 6799999999999985 4566999999999 899999999998876655421 124788
Q ss_pred HHHhhcCceEEEE--eCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeec
Q 016903 222 VKGRAYGVRSIRV--DGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 268 (380)
Q Consensus 222 ~~a~a~G~~~~~V--dG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t~R 268 (380)
++.++||..-... .-...+.+..++..+.+ ..+++.+|||++.+
T Consensus 491 ~l~~afg~~~~~~~~~~~~~~~l~~~~~~~~~---~~~~i~lIEv~lp~ 536 (557)
T COG3961 491 ALPEAFGAKNGEAKFRATTGEELALALDVAFA---NNDRIRLIEVMLPV 536 (557)
T ss_pred hhhhhcCCCCceEEEeecChHHHHHHHHHHhc---CCCceEEEEEecCc
Confidence 8999998743322 22255666677766665 35689999999855
No 130
>PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding
Probab=99.23 E-value=2.5e-11 Score=141.00 Aligned_cols=116 Identities=18% Similarity=0.133 Sum_probs=91.7
Q ss_pred ccCccccc--chHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHc--CCCEEEEEEcCC-ccccccc---
Q 016903 140 TVSSTIAT--QLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVT--EAPVIFICRNNG-WAISTPI--- 211 (380)
Q Consensus 140 ~~~g~lG~--~lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~--~Lpvi~vv~NN~-~~~~~~~--- 211 (380)
.+.|++|. ++|.|+|+++|. +++|+|++|||+|++. ..+|.+|+++ ++|+++||.||+ |++....
T Consensus 756 ~~~G~mG~~G~lpaAIGaala~-----~r~Vv~i~GDGsF~m~--~~EL~Ta~r~~~~lpi~iVV~NN~gggi~~~l~~~ 828 (1655)
T PLN02980 756 GNRGASGIDGLLSTAIGFAVGC-----NKRVLCVVGDISFLHD--TNGLSILSQRIARKPMTILVINNHGGAIFSLLPIA 828 (1655)
T ss_pred ecCCccchhhhHHHHHHHhhcC-----CCCEEEEEehHHHHhh--hhHHHHhhcccCCCCEEEEEEeCCCcHhhhcCccC
Confidence 45688998 599999999874 6789999999999754 4669999884 999888777666 5543210
Q ss_pred ---cc----c----cCCcCHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeec
Q 016903 212 ---SD----Q----FRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 268 (380)
Q Consensus 212 ---~~----~----~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t~R 268 (380)
.. . ....|+.+.|++||+++.+|+ +++++.++++++.+ .++|+|||+.|.|
T Consensus 829 ~~~~~~~~~~~~~~~~~~df~~lA~a~G~~~~rV~--~~~eL~~aL~~a~~----~~~p~lIEV~t~~ 890 (1655)
T PLN02980 829 KRTEPRVLNQYFYTSHDISIENLCLAHGVRHLHVG--TKSELEDALFTSQV----EQMDCVVEVESSI 890 (1655)
T ss_pred CCCcchhHHHHhcCCCCCCHHHHHHHcCCceeecC--CHHHHHHHHHHhhc----cCCCEEEEEecCh
Confidence 00 0 124689999999999999999 89999999988774 5899999999954
No 131
>KOG1185 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=99.19 E-value=1.6e-10 Score=115.28 Aligned_cols=118 Identities=20% Similarity=0.214 Sum_probs=91.3
Q ss_pred ccCcccccchHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcC-C-cccccccc-----
Q 016903 140 TVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN-G-WAISTPIS----- 212 (380)
Q Consensus 140 ~~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN-~-~~~~~~~~----- 212 (380)
++.|+||-|++.|+++|++. +++.|+|+.||++|.-. .-++.++.+||||||.||.|| + |+.+....
T Consensus 427 GtfgTMGVG~Gfalaaa~~~----P~~~V~~veGDsaFGfS--aME~ET~vR~~Lpvv~vV~NN~Giyg~d~~~~~~I~e 500 (571)
T KOG1185|consen 427 GTFGTMGVGLGFALAAALAA----PDRKVVCVEGDSAFGFS--AMELETFVRYKLPVVIVVGNNNGIYGLDDDGWKQISE 500 (571)
T ss_pred ccccccccchhHHHHHHhhC----CCCeEEEEecCcccCcc--hhhHHHHHHhcCCeEEEEecCCcccccCcccHHHHhh
Confidence 45688888887777777764 99999999999999643 234899999999988888766 3 33332211
Q ss_pred ----------cccCCcCHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeec
Q 016903 213 ----------DQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 268 (380)
Q Consensus 213 ----------~~~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t~R 268 (380)
......++.+.+++||.++..|+ .++++..++++++. .+++|++|.+..-+
T Consensus 501 ~~~~~~~p~~~l~~~~rY~~v~ka~G~kG~~v~--t~~el~~~l~~a~q---~~~~psvINVlI~p 561 (571)
T KOG1185|consen 501 QDPTLDLPPTALLANTRYDKVAKAFGGKGYFVS--TVEELLAALQQACQ---DTDKPSVINVLIGP 561 (571)
T ss_pred cCcccCCCcccccccccHHHHHHHcCCCceeeC--CHHHHHHHHHHHHh---cCCCCeEEEEEecc
Confidence 11234578899999999999999 99999999999886 46799999998744
No 132
>COG3960 Glyoxylate carboligase [General function prediction only]
Probab=98.94 E-value=1.4e-09 Score=104.32 Aligned_cols=157 Identities=21% Similarity=0.225 Sum_probs=116.5
Q ss_pred HHHHHhhcCCCCCCCCCCCc-------cccCCCCCCc---cccCcccccchHHHHHHHHHhhhcCCCCeeEEEeCccccC
Q 016903 109 EFANQCFGNKADYGKGRQMP-------IHYGSNKHNY---FTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTS 178 (380)
Q Consensus 109 ~~~~e~~g~~~~~~~G~~~~-------~H~~~~~~~~---~~~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~ 178 (380)
+-|.++||+...+..--+++ .|.. .+.. .+..|++|+.+|.|+|...| .+++.+|++.||-.|+
T Consensus 377 eemn~~fgrd~~yvstiglsqia~aqflhv~--~pr~wincgqagplgwtipaalgv~~a----dp~r~vvalsgdydfq 450 (592)
T COG3960 377 EEMNKAFGRDVCYVTTIGLSQIAAAQFLHVF--KPRHWINCGQAGPLGWTIPAALGVCAA----DPKRNVVAISGDYDFQ 450 (592)
T ss_pred HHHHhhcCCceeEEEeccHHHHhhhhhhhhc--CCcceeecCccCCcccccchhhceeec----CCCCceEEeecCchHH
Confidence 45777888765432221221 2322 2332 33468999999999998554 5889999999999998
Q ss_pred cchHHHHHHHHHHcCCCEEEEEEcCCcccccc-ccc--------cc------------CCcCHHHHHhhcCceEEEEeCC
Q 016903 179 EGDFHAALNFSAVTEAPVIFICRNNGWAISTP-ISD--------QF------------RSDGAVVKGRAYGVRSIRVDGN 237 (380)
Q Consensus 179 eG~~~Eal~~A~~~~Lpvi~vv~NN~~~~~~~-~~~--------~~------------~~~~~~~~a~a~G~~~~~VdG~ 237 (380)
...|.|...+++|||.|+|+.||.|--... .++ +. ...|..+.++++|++.++|-
T Consensus 451 --fmieelavgaq~k~pyihv~vnnaylglirqaqr~f~mdy~v~laf~nin~~~~~gygvdhv~v~eglgckairv~-- 526 (592)
T COG3960 451 --FLIEELAVGAQFKIPYIHVLVNNAYLGLIRQAQRAFDMDYCVQLAFENINSSEVNGYGVDHVKVAEGLGCKAIRVF-- 526 (592)
T ss_pred --HHHHHHhhhhcccCceEEEEecchHHHHHHHHHhcCCccceeeehhhccCCccccccCccceeehhccCceeEEec--
Confidence 467999999999999999999998722111 111 10 12355678999999999998
Q ss_pred CHHHHHHHHHHHHHHhhccCCcEEEEEEeecCCCCCCC
Q 016903 238 DALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTS 275 (380)
Q Consensus 238 D~~av~~a~~~a~~~ar~~~gP~lIe~~t~R~~gHs~~ 275 (380)
++.++..++.+|...+.+..-|++||+..-|...-|++
T Consensus 527 ~p~e~a~af~~a~~lm~eh~vpvvve~ilervtnismg 564 (592)
T COG3960 527 KPEDIAPAFEQAKALMAQHRVPVVVEVILERVTNISMG 564 (592)
T ss_pred ChHHhhHHHHHHHHHHHhcCCCeeeehHHHHhhccccc
Confidence 99999999999998888889999999999998766654
No 133
>KOG4166 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=98.92 E-value=1.9e-09 Score=106.14 Aligned_cols=117 Identities=21% Similarity=0.230 Sum_probs=94.0
Q ss_pred cCcccccchHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCc-ccccccc-------
Q 016903 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGW-AISTPIS------- 212 (380)
Q Consensus 141 ~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~-~~~~~~~------- 212 (380)
..|.||.|+|.|+|+..| +++..||=+-||++|.+. ...|.++.+.++||-+++.||.- ++.+..+
T Consensus 522 GLGtMGfGLPAAIGAsVA----~P~~iViDIDGDaSF~Mt--~~ELat~rq~~~PVKiLiLNNeeqGMVtQWq~lFYe~r 595 (675)
T KOG4166|consen 522 GLGTMGFGLPAAIGASVA----NPDAIVIDIDGDASFIMT--VQELATIRQENLPVKILILNNEEQGMVTQWQDLFYEAR 595 (675)
T ss_pred CccccccCcchhhccccc----CcccEEEeccCCceeeee--hHhhhhhhhcCCceEEEEecchhhhhHHHHHHHHHHhh
Confidence 357999999999999877 589999999999999753 34599999999999999988863 3322211
Q ss_pred ---cccCCcCHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecC
Q 016903 213 ---DQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRV 269 (380)
Q Consensus 213 ---~~~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t~R~ 269 (380)
...-++++.++|.++|+++.+|. .-+++.+.+++.+. .+||+|+|+.+...
T Consensus 596 ysHThQ~nPnf~klA~AmGikalRV~--K~edL~~k~kefls----TkGPvLleV~v~~k 649 (675)
T KOG4166|consen 596 YSHTHQENPNFLKLAAAMGIKALRVT--KKEDLREKIKEFLS----TKGPVLLEVIVPHK 649 (675)
T ss_pred hccccccCccHHHHHHhcCCchheee--hHHHHHHHHHHHhC----CCCCeEEEEEccCc
Confidence 11235789999999999999998 77888888888875 68999999988543
No 134
>KOG1184 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=98.87 E-value=1.3e-08 Score=102.57 Aligned_cols=121 Identities=18% Similarity=0.190 Sum_probs=91.1
Q ss_pred cccCcccccchHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCC-CEEEEEEcCCcccccccccc---
Q 016903 139 FTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEA-PVIFICRNNGWAISTPISDQ--- 214 (380)
Q Consensus 139 ~~~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~L-pvi~vv~NN~~~~~~~~~~~--- 214 (380)
....|++|+.+|.++|+++|. ++++|+.|+|||++++- -+.+.++.+|+| |+||+++|++|.|.......
T Consensus 411 q~~wgsIG~svga~lG~a~a~----~e~rvilfiGDGs~qlT--vQeiStmir~gl~~~if~~NN~GYTIE~~IH~~~Yn 484 (561)
T KOG1184|consen 411 QMQWGSIGWSVGATLGYAQAA----PEKRVILFIGDGSFQLT--VQEISTMIRWGLKPIIFLINNGGYTIEVEIHDGPYN 484 (561)
T ss_pred EEEEeeccccchhhhhhhhcc----CCceEEEEecCccceee--HHHHHHHHhcCCCcEEEEEeCCceEEEEeecCCCcc
Confidence 334799999999999999986 56899999999999863 355899999999 69999999999887655441
Q ss_pred -cCCcCHHHHHhhcCceE---EEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEee
Q 016903 215 -FRSDGAVVKGRAYGVRS---IRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTY 267 (380)
Q Consensus 215 -~~~~~~~~~a~a~G~~~---~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t~ 267 (380)
..+-++.++.++||..- ....-..-.++.++.+.+... +.++|++|||...
T Consensus 485 ~I~~Wd~~~l~~afg~~~gk~~~~~v~~~~e~~~~~~~~~~~--~~~~i~liEv~l~ 539 (561)
T KOG1184|consen 485 DIQNWDYTALLEAFGAGEGKYETHKVRTEEELVEAIKDATFE--KNDKIRLIEVILP 539 (561)
T ss_pred ccccchHHHHHHhhcCccceeEEeeeccchHHHHHHhhhhhc--ccCceEEEEEecC
Confidence 12247889999998543 222222446677777777632 4678999999873
No 135
>PF09364 XFP_N: XFP N-terminal domain; InterPro: IPR018970 Phosphoketolases (PK) are key enzymes of the pentose phosphate pathway of heterofermentative and facultative homofermentative lactic acid bacteria and of the D-fructose 6-phosphate shunt of bifidobacteria. PK activity has been sporadically reported in other microorganisms including eukaryotic yeasts. Xylulose-5-phosphate/fructose-6-phosphate phosphoketolase is a thiamine diphosphate (ThdP)-dependent enzyme found in bacteria such as Bifidobacterium sp [, ]. This enzyme has dual-specificity with the following catalytic activities: 4.1.2.9 from EC: xylose 5-P + Pi = acetyl-P + glyeraldehyde-3-P 4.1.2.22 from EC: fructose-6-P + Pi = acetyl-P + erythrose-4-P Phosphoketolases are distantly related to transketolases, e.g. IPR005475 from INTERPRO.; PDB: 3AI7_B 3AHC_A 3AHJ_A 3AHG_A 3AHE_A 3AHI_A 3AHD_A 3AHF_A 3AHH_A.
Probab=98.87 E-value=7.9e-09 Score=100.60 Aligned_cols=192 Identities=24% Similarity=0.286 Sum_probs=114.2
Q ss_pred ccccccchhhHHHHHHHhcCCC--CcEEEcccccHHH--HHH----cC----------CC---HHHHHHHhhcCCCCCCC
Q 016903 65 SFYLTTSGEEAINIASAAAIKN--DDFVVPQYREPGV--LLW----RG----------FS---MQEFANQCFGNKADYGK 123 (380)
Q Consensus 65 ~~~~~~~G~Ea~~~~~~~~l~~--~D~v~~~yR~~~~--~l~----~G----------~~---~~~~~~e~~g~~~~~~~ 123 (380)
+.|-++-|+-.+.+++...++. .|+++.+--||+. +++ -| .+ +..++.+| . -
T Consensus 48 GHWGt~PGlnfiyahlNrlI~~~~~~~~~v~GpGHg~pai~A~~~LeGs~se~yp~~~~d~~Gl~~L~~~F-S------~ 120 (379)
T PF09364_consen 48 GHWGTSPGLNFIYAHLNRLIRKYDLDMIYVMGPGHGGPAILANLYLEGSYSEFYPDISQDEEGLRRLFRQF-S------F 120 (379)
T ss_dssp S-TTTHHHHHHHHHHHHHHHHHHTB-B--EESSGGGHHHHHHHHHHHSHHHHHSTTS-SSHHHHHHHHHHB-T------S
T ss_pred cccCCCccHHHHHHHHHHHHHhcCCceEEEecCCCCchhhhhhhhhcCccccccCCCCCCHHHHHHHHHhC-C------C
Confidence 5677788888888888777763 4666665566632 121 12 11 22334443 2 2
Q ss_pred CCCCccccCCCCCCccccCcccccchHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHH-cC-C-C-----
Q 016903 124 GRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAV-TE-A-P----- 195 (380)
Q Consensus 124 G~~~~~H~~~~~~~~~~~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~-~~-L-p----- 195 (380)
-.+.++|.+...+|.+.--|-||.+++.|.|+++ .+++.+|+|++|||++.+|.. ..+.+ .+ | |
T Consensus 121 PgGipSH~~p~tPGsIhEGGELGYaLshA~GA~~----DnPdliv~~vvGDGEaETGpl----A~sWh~~kflnP~~dGa 192 (379)
T PF09364_consen 121 PGGIPSHVSPETPGSIHEGGELGYALSHAFGAVF----DNPDLIVACVVGDGEAETGPL----AASWHSNKFLNPATDGA 192 (379)
T ss_dssp TTSB-SSS-TTSTT-S---SSTS-HHHHHHHHHT----T-TT-EEEEEEETTGGGSHHH----HHHGGGGGSS-TTTS-E
T ss_pred CCCCccccCcCCCCccCcCcchhhHHHHHhhccc----CCCCeEEEEEecCCcccCCcc----cccccccceeCcccCce
Confidence 3468899887788888888999999999999875 469999999999999988852 22221 11 2 3
Q ss_pred EEEEEEcCCccccccccc-ccCCcCHHHHHhhcCceEEEEeCCCHHHHHHHHHHHH----H-------HhhccC---Cc-
Q 016903 196 VIFICRNNGWAISTPISD-QFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAR----E-------MAIGEG---RP- 259 (380)
Q Consensus 196 vi~vv~NN~~~~~~~~~~-~~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~a~----~-------~ar~~~---gP- 259 (380)
|+=|+.=|+|.|+.++-- ..+...+.+.++++|+..+.|+|.|+.++...+..++ + .||+++ +|
T Consensus 193 VLPILhLNG~KI~~pTil~r~~~~eL~~lf~G~Gy~p~~Veg~dp~~~h~~ma~ald~a~~~I~~iq~~Ar~~~~~~~pr 272 (379)
T PF09364_consen 193 VLPILHLNGYKISNPTILARMSDEELEALFRGYGYEPIFVEGDDPADMHQAMAAALDWALEEIRAIQKAARSGNPAYRPR 272 (379)
T ss_dssp EEEEEEE-SBSSSSB-HHHHS-HHHHHHHHHHTTEEEEEEE---HHHHHHHHHHHHHHHHHHHHHHHHHHTT--SS----
T ss_pred eeceEEecCccccCCeEeeecCHHHHHHHHHhCCCeEEEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCC
Confidence 666888899999988742 2345568899999999999999999988877665443 2 233332 23
Q ss_pred -EEEEEEeecCCC
Q 016903 260 -ILIEALTYRVGH 271 (380)
Q Consensus 260 -~lIe~~t~R~~g 271 (380)
-+|.++|-+.++
T Consensus 273 wPmivlRtPKGWt 285 (379)
T PF09364_consen 273 WPMIVLRTPKGWT 285 (379)
T ss_dssp EEEEEEE--TTTT
T ss_pred CcEEEEECCcccC
Confidence 366777766653
No 136
>COG3962 Acetolactate synthase [Amino acid transport and metabolism]
Probab=98.71 E-value=7.3e-08 Score=96.06 Aligned_cols=116 Identities=18% Similarity=0.254 Sum_probs=90.3
Q ss_pred cCcccccchHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEE-cCCcccccccc-------
Q 016903 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICR-NNGWAISTPIS------- 212 (380)
Q Consensus 141 ~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~-NN~~~~~~~~~------- 212 (380)
..+.||+-+.-++|+ |+..+++-|++++||||+.+ .+.+|.++..+++.+++|+. |-+|+.....+
T Consensus 442 gfSCMGYEiaG~lG~----K~a~pdreV~vmVGDGSymM--lnSEL~Tsv~~g~Ki~Vvl~DN~GyGCIn~LQm~~Gg~s 515 (617)
T COG3962 442 GFSCMGYEIAGGLGA----KAAEPDREVYVMVGDGSYMM--LNSELATSVMLGKKIIVVLLDNRGYGCINRLQMATGGAS 515 (617)
T ss_pred ccccccccccccccc----ccCCCCCeEEEEEcccchhh--hhHHHHHHHHcCCeEEEEEECCCCcchhhhhhhhcCcch
Confidence 357888888777776 45678999999999999974 77889999999998666555 55675432111
Q ss_pred -----------cccCCcCHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeec
Q 016903 213 -----------DQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 268 (380)
Q Consensus 213 -----------~~~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t~R 268 (380)
......||+..|++||+++++|. ++.++..++++|.+ ..+++||+++|..
T Consensus 516 f~~~~r~~~~e~~~~~vDfA~~A~s~Ga~~~kv~--~i~eL~aAL~~Ak~----~~~ttvi~I~t~P 576 (617)
T COG3962 516 FNNLLRDTDHEEEILQVDFAAHAESYGAKAYKVG--TIEELEAALADAKA----SDRTTVIVIDTDP 576 (617)
T ss_pred hhhhhhhhcccCCCCcccHHHHHhhcCceeEecC--CHHHHHHHHHHHHh----CCCCEEEEEecCC
Confidence 22345689999999999999998 89888887777664 6899999999854
No 137
>COG1013 PorB Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, beta subunit [Energy production and conversion]
Probab=98.54 E-value=3.5e-06 Score=81.64 Aligned_cols=148 Identities=18% Similarity=0.192 Sum_probs=100.1
Q ss_pred cCcccccchHHHHHHHHHhhhcCCCCeeEEEeCccc-cCcchHHHHHHHHHHcCCCEEEEEEcCC-cccccccccc----
Q 016903 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGG-TSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPISDQ---- 214 (380)
Q Consensus 141 ~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDG~-~~eG~~~Eal~~A~~~~Lpvi~vv~NN~-~~~~~~~~~~---- 214 (380)
..+.-|-..+.|.|+.+|. ++..||++.|||. +..|. ..+--|.+.+.+|++||.||. |+.++-+...
T Consensus 68 ~hs~~gra~a~atGik~A~----~~l~Viv~gGDG~~~dIG~--~~l~h~~~Rn~dit~iv~DNevYgnTggQ~S~tTp~ 141 (294)
T COG1013 68 VHSLHGRAAAVATGIKLAN----PALSVIVIGGDGDAYDIGG--NHLIHALRRNHDITYIVVDNEVYGNTGGQASPTTPK 141 (294)
T ss_pred eeeccCcchhhHHHHHHhc----cCCeEEEEecchhHhhhhh--HHHHHHHHcCCCeEEEEECCeecccCCCccCCCCCC
Confidence 3567788899999998886 4568999999995 56664 347778889999999998886 4443221111
Q ss_pred ------------c-CCcCHHHHHhhcCceEE-EEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCCCCCCCCCCCC
Q 016903 215 ------------F-RSDGAVVKGRAYGVRSI-RVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDDSTK 280 (380)
Q Consensus 215 ------------~-~~~~~~~~a~a~G~~~~-~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t~R~~gHs~~Dd~~~ 280 (380)
. ...|+..++.++|...+ ++.--++..+...+++|+++ +||.||++.+- -++.-+. ..
T Consensus 142 G~~t~t~p~Gk~~~~k~d~~~la~a~G~~yVAr~~~~~~~~l~~~i~kA~~~----~Gps~I~v~sP---C~t~~~~-~~ 213 (294)
T COG1013 142 GAKTKTTPYGKRSEKKKDPGLLAMAAGATYVARASVGDPKDLTEKIKKAAEH----KGPSFIDVLSP---CPTGNGR-NT 213 (294)
T ss_pred CceeeecCCCCCcCCCCCHHHHHHHCCCCeEEEecccCHHHHHHHHHHHHhc----cCCeEEEEecC---CCCCCCc-cc
Confidence 1 22378899999998755 46656799999999999975 69999998752 1222222 22
Q ss_pred CCChhhHHHHH-hcCChHHHHHH
Q 016903 281 YRPVDEIEWWR-TTQDPVTRFRK 302 (380)
Q Consensus 281 Yr~~~e~~~~~-~~~DPi~~~~~ 302 (380)
+...++...|- ..-+|+-++..
T Consensus 214 ~~~~~~~~~ave~g~~pl~~~~~ 236 (294)
T COG1013 214 MKTIEEAKLAVETGYWPLYRYEP 236 (294)
T ss_pred chHHHHHHHHHhcCCceeeeccC
Confidence 34444444442 24566666554
No 138
>COG4231 Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits [Energy production and conversion]
Probab=98.14 E-value=6.5e-06 Score=85.43 Aligned_cols=119 Identities=21% Similarity=0.187 Sum_probs=88.0
Q ss_pred CccccCcccccchHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCc-ccccccccc-
Q 016903 137 NYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGW-AISTPISDQ- 214 (380)
Q Consensus 137 ~~~~~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~-~~~~~~~~~- 214 (380)
+....+-.+|.++++|-|++++. .+++|+++|||.|..... .+|..|...+.|++++|-+|.+ ++++.+...
T Consensus 422 ~~~d~t~~mGssig~a~g~~~~~-----~k~~va~iGDsTF~HsGi-~~l~nAV~n~~~~~~vvLdN~~tAMTGgQp~pg 495 (640)
T COG4231 422 NTVDTTTMMGSSIGIAGGLSFAS-----TKKIVAVIGDSTFFHSGI-LALINAVYNKANILVVVLDNRTTAMTGGQPHPG 495 (640)
T ss_pred chhhhhhhccchhhhcccccccc-----CCceEEEeccccccccCc-HHHHHHHhcCCCeEEEEEeccchhccCCCCCCC
Confidence 33444567888888888888764 378999999999954333 3477888889998888877776 455443322
Q ss_pred ---------cCCcCHHHHHhhcCceEEE-EeCCCHHHHHHHHHHHHHHhhccCCcEEEEEE
Q 016903 215 ---------FRSDGAVVKGRAYGVRSIR-VDGNDALAIYSAVHAAREMAIGEGRPILIEAL 265 (380)
Q Consensus 215 ---------~~~~~~~~~a~a~G~~~~~-VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~ 265 (380)
.....+.+..++.|+..+. ||-.|..++.+++++|++ ..+|.+|.++
T Consensus 496 ~~~~~~g~~~~~i~iee~~r~~Gv~~v~~vdp~~~~~~~~~~keale----~~gpsViiak 552 (640)
T COG4231 496 TGVAAEGTKSTAIVIEEVVRAMGVEDVETVDPYDVKELSEAIKEALE----VPGPSVIIAK 552 (640)
T ss_pred cccccCCCccceeEhhHhhhhcCceeeeccCCcchHHHHHHHHHHhc----CCCceEEEEc
Confidence 1234678899999998776 666899999999999887 4789988553
No 139
>COG3957 Phosphoketolase [Carbohydrate transport and metabolism]
Probab=98.10 E-value=1.1e-05 Score=84.37 Aligned_cols=168 Identities=20% Similarity=0.212 Sum_probs=114.8
Q ss_pred cccccccchhhHHHHHHHhcCCCC--cEEEcccccHHHH------HHcCC----------C---HHHHHHHhhcCCCCCC
Q 016903 64 ISFYLTTSGEEAINIASAAAIKND--DFVVPQYREPGVL------LWRGF----------S---MQEFANQCFGNKADYG 122 (380)
Q Consensus 64 i~~~~~~~G~Ea~~~~~~~~l~~~--D~v~~~yR~~~~~------l~~G~----------~---~~~~~~e~~g~~~~~~ 122 (380)
++.+-++.|+--+.++....++.. ++++..--||+.. +.-|. + +.+++.+|.
T Consensus 60 lGHwGt~pg~s~~Y~H~nr~i~~~d~~~~yv~GpGHg~~~~~~~~yLeGtys~~yp~~s~d~~Gm~rL~~qFs------- 132 (793)
T COG3957 60 LGHWGTQPGLSFIYAHLNRLISKYDANMAYVMGPGHGGPAIVANTYLEGTYSEMYPDISQDEEGLNRLFKQFS------- 132 (793)
T ss_pred cccccCCCCchhhhhhhhHHHHhhCcceEEEecCCCCcceeeeccccCCccccccccccccHHHHHHHHHhcc-------
Confidence 466777788888887777766654 3344333444211 11221 1 223344443
Q ss_pred CCCCCccccCCCCCCccccCcccccchHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHc--CC------
Q 016903 123 KGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVT--EA------ 194 (380)
Q Consensus 123 ~G~~~~~H~~~~~~~~~~~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~--~L------ 194 (380)
--.|.++|.....+|.+...|.||+++..|.|+|+ ..++.++.|++|||+..+|. +.++..- -+
T Consensus 133 ~PgGi~SH~~petPGsIhEGGeLGy~l~ha~gAa~----d~Pdli~~~vvGDGeaetgp----latsWhs~kf~np~~dG 204 (793)
T COG3957 133 FPGGIGSHVAPETPGSIHEGGELGYALSHAYGAAF----DNPDLIVACVVGDGEAETGP----LATSWHSNKFLNPARDG 204 (793)
T ss_pred CCCCcccccCCCCCCccCcCcchhHHHHHHHHhhc----CCCCcEEEEEecccccccCc----cccccccccccCccccC
Confidence 23458889887788999889999999999999875 46899999999999776664 3333321 11
Q ss_pred CEEEEEEcCCcccccccccc-cCCcCHHHHHhhcCceEEEEeCCCHHHHHHHH
Q 016903 195 PVIFICRNNGWAISTPISDQ-FRSDGAVVKGRAYGVRSIRVDGNDALAIYSAV 246 (380)
Q Consensus 195 pvi~vv~NN~~~~~~~~~~~-~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~ 246 (380)
.++=|..=|+|.|+-++.-. .+...+...+++||++-+.|+|+|+.++...+
T Consensus 205 avLPIL~lNGykI~npT~lar~s~~el~~~f~G~Gy~p~~veg~d~~d~hq~m 257 (793)
T COG3957 205 AVLPILHLNGYKIENPTVLARISDEELKALFEGYGYEPVFVEGADPADMHQLM 257 (793)
T ss_pred ceeeEEEecceeccCceeeeecChHHHHHHHhhCCCceeEecCCChHHhhhhH
Confidence 37778888999999877533 24456889999999999999999998844433
No 140
>COG1165 MenD 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase [Coenzyme metabolism]
Probab=97.78 E-value=8.1e-05 Score=76.51 Aligned_cols=108 Identities=22% Similarity=0.190 Sum_probs=75.8
Q ss_pred chHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCC-EEEEEEcCCcccccc--cc-------ccc--
Q 016903 148 QLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAP-VIFICRNNGWAISTP--IS-------DQF-- 215 (380)
Q Consensus 148 ~lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lp-vi~vv~NN~~~~~~~--~~-------~~~-- 215 (380)
.++-|+|++.|. .++++.++||=|+-.-. .+|-+......| +|+|++||+-+|... +. +.+
T Consensus 427 ~vSTA~Gi~~a~-----~~ptv~liGDLS~lhD~--NgLl~~k~~~~~ltIvv~NNnGGgIF~~Lp~~~~~~~fe~~F~t 499 (566)
T COG1165 427 TVSTALGIARAT-----QKPTVALIGDLSFLHDL--NGLLLLKKVPQPLTIVVVNNNGGGIFSLLPQAQSEPVFERLFGT 499 (566)
T ss_pred hHHHHhhhhhhc-----CCceEEEEechhhhhcc--chHhhcCCCCCCeEEEEEeCCCceeeeeccCCCCcchHHHhcCC
Confidence 377788988874 45699999999993211 124444555567 556667777666421 11 111
Q ss_pred -CCcCHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeec
Q 016903 216 -RSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 268 (380)
Q Consensus 216 -~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t~R 268 (380)
..-||+..|+.||+...+++ ...++..++..+.. ..|-.+||++|.|
T Consensus 500 Ph~ldF~~la~~y~l~y~~~~--s~~~l~~~~~~~~~----~~g~~viEvkt~r 547 (566)
T COG1165 500 PHGLDFAHLAATYGLEYHRPQ--SWDELGEALDQAWR----RSGTTVIEVKTDR 547 (566)
T ss_pred CCCCCHHHHHHHhCccccccC--cHHHHHHHHhhhcc----CCCcEEEEEecCh
Confidence 13489999999999999998 78888888887764 3678999999976
No 141
>cd03377 TPP_PFOR_PNO Thiamine pyrophosphate (TPP family), PFOR_PNO subfamily, TPP-binding module; composed of proteins similar to the single subunit pyruvate ferredoxin oxidoreductase (PFOR) of Desulfovibrio Africanus, present in bacteria and amitochondriate eukaryotes. This subfamily also includes proteins characterized as pyruvate NADP+ oxidoreductase (PNO). These enzymes are dependent on TPP and a divalent metal cation as cofactors. PFOR and PNO catalyze the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. The PFOR from cyanobacterium Anabaena (NifJ) is required for the transfer of electrons from pyruvate to flavodoxin, which reduces nitrogenase. The facultative anaerobic mitochondrion of the photosynthetic protist Euglena gra
Probab=97.42 E-value=0.0012 Score=65.45 Aligned_cols=95 Identities=16% Similarity=0.177 Sum_probs=69.3
Q ss_pred CeeEEEeCcccc-CcchHHHHHHHHHHcCCCEEEEEEcCC-ccccccc-------c---------cccCCcCHHHHHhhc
Q 016903 166 ACAVTYFGDGGT-SEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPI-------S---------DQFRSDGAVVKGRAY 227 (380)
Q Consensus 166 ~~vv~~~GDG~~-~eG~~~Eal~~A~~~~Lpvi~vv~NN~-~~~~~~~-------~---------~~~~~~~~~~~a~a~ 227 (380)
..||++.|||.. .-|. ..+.-|...+.+|++||-||. |+.++-+ . ......|+..++.++
T Consensus 152 ~~v~v~gGDG~~ydIG~--~~l~ha~~r~~ni~~iv~DNe~Y~nTGgQ~S~tTp~Ga~t~tsp~Gk~~~kkd~~~ia~a~ 229 (365)
T cd03377 152 KSVWIIGGDGWAYDIGY--GGLDHVLASGENVNILVLDTEVYSNTGGQASKATPLGAVAKFAAAGKRTGKKDLGMIAMSY 229 (365)
T ss_pred cceEEEecchhhhccch--hhHHHHHHcCCCeEEEEECCcccccCCCcCCCCCCCcCcCccCCCCCCCCCcCHHHHHHHc
Confidence 589999999965 6563 346667777889888888775 5543211 1 112235888999999
Q ss_pred CceEE-EEe-CCCHHHHHHHHHHHHHHhhccCCcEEEEEEe
Q 016903 228 GVRSI-RVD-GNDALAIYSAVHAAREMAIGEGRPILIEALT 266 (380)
Q Consensus 228 G~~~~-~Vd-G~D~~av~~a~~~a~~~ar~~~gP~lIe~~t 266 (380)
|.+.+ ++. |.++.++..++++|.++ +||.+|++.+
T Consensus 230 g~~YVA~~s~~~~~~~~~~~i~eA~~~----~Gps~I~v~s 266 (365)
T cd03377 230 GNVYVAQIALGANDNQTLKAFREAEAY----DGPSLIIAYS 266 (365)
T ss_pred CCCEEEEEecccCHHHHHHHHHHHhcC----CCCEEEEEEc
Confidence 98765 454 45899999999999874 8999999876
No 142
>cd06586 TPP_enzyme_PYR Pyrimidine (PYR) binding domain of thiamine pyrophosphate (TPP)-dependent enzymes. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this group. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. In the case of 2-oxoisovalerate dehydrogenase (2OXO), sulfopyruvate deca
Probab=97.06 E-value=0.011 Score=50.93 Aligned_cols=104 Identities=19% Similarity=0.163 Sum_probs=68.6
Q ss_pred hHHHHHHHHHhhhcCCCCeeEEEe-CccccCcchHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCcCHHHHHhhc
Q 016903 149 LPHAVGAAYALKMDRKDACAVTYF-GDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAY 227 (380)
Q Consensus 149 lp~A~G~A~A~k~~~~~~~vv~~~-GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~~~~~~~~~~~~~~~~~~a~a~ 227 (380)
..+|.|.+++. . ..++++. |.|..+ ..+++..|...++|+|+|+...+..... .......+....++.+
T Consensus 48 ~~~A~G~a~~~----~-~~v~~~~~gpg~~~---~~~~l~~a~~~~~Pvl~i~~~~~~~~~~--~~~~q~~~~~~~~~~~ 117 (154)
T cd06586 48 AGAAAGYARAG----G-PPVVIVTSGTGLLN---AINGLADAAAEHLPVVFLIGARGISAQA--KQTFQSMFDLGMYRSI 117 (154)
T ss_pred HHHHHHHHHhh----C-CEEEEEcCCCcHHH---HHHHHHHHHhcCCCEEEEeCCCChhhhc--cCcccccCHHHHHHHh
Confidence 55677776652 3 3333434 888764 5577888888899999999766543211 1111223445666766
Q ss_pred CceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEE
Q 016903 228 GVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEA 264 (380)
Q Consensus 228 G~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~ 264 (380)
..-.+.+. ++.+..+.+.+|+..+....||++|++
T Consensus 118 ~~~~~~~~--~~~~~~~~~~~a~~~a~~~~gPv~l~i 152 (154)
T cd06586 118 PEANISSP--SPAELPAGIDHAIRTAYASQGPVVVRL 152 (154)
T ss_pred hheEEEeC--CHHHHHHHHHHHHHHHhcCCCCEEEEc
Confidence 65555555 778888888888887777789999976
No 143
>PRK13030 2-oxoacid ferredoxin oxidoreductase; Provisional
Probab=97.04 E-value=0.003 Score=71.27 Aligned_cols=115 Identities=15% Similarity=0.023 Sum_probs=76.4
Q ss_pred cCcccccchHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCc-ccccccccccCCcC
Q 016903 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGW-AISTPISDQFRSDG 219 (380)
Q Consensus 141 ~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~-~~~~~~~~~~~~~~ 219 (380)
++..||+..+.++|.+.+. .++.+|+++|||.|...... +|.-|...+.|++++|-+|.. ++++.+...- ..+
T Consensus 466 ~~~~MG~~g~~~~G~a~~~----~~~~v~a~iGDgTf~HSG~~-al~~AV~~~~nit~~IL~N~~tAMTGgQp~~g-~i~ 539 (1159)
T PRK13030 466 GLTQMGGEGVDWIGHAPFT----ETKHVFQNLGDGTYFHSGSL-AIRQAVAAGANITYKILYNDAVAMTGGQPVDG-SIS 539 (1159)
T ss_pred eeeccCccchhhceecccc----CCCCEEEEeccchhhhcCHH-HHHHHHhcCCCeEEEEEeCCcccccCCCCCCC-CCC
Confidence 4568898899999988763 34679999999999533333 677788888999888877764 6665443321 234
Q ss_pred HHH---HHhhcCceEEEEeCCCHHH----------------HHHHHHHHHHHhhccCCcEEEEE
Q 016903 220 AVV---KGRAYGVRSIRVDGNDALA----------------IYSAVHAAREMAIGEGRPILIEA 264 (380)
Q Consensus 220 ~~~---~a~a~G~~~~~VdG~D~~a----------------v~~a~~~a~~~ar~~~gP~lIe~ 264 (380)
+.+ ..++.|++-+.|--.|+.. ..+++++++ |+.+||++|..
T Consensus 540 v~~i~~~~~a~Gv~~v~vvsddp~~~~~~~~~~~~~v~~r~~l~~vq~~l---~~~~GvsViI~ 600 (1159)
T PRK13030 540 VPQIARQVEAEGVSRIVVVSDEPEKYRGHHLPAGVTVHHRDELDAVQREL---RETPGVTVLIY 600 (1159)
T ss_pred HHHHHHHHHhCCCcEEEEecCChhhccccccCCCcccccHHHHHHHHHHH---hcCCCcEEEEE
Confidence 444 7789999877753334333 334444444 34678888853
No 144
>PRK09193 indolepyruvate ferredoxin oxidoreductase; Validated
Probab=97.02 E-value=0.0032 Score=70.93 Aligned_cols=120 Identities=12% Similarity=0.046 Sum_probs=80.3
Q ss_pred ccCcccccchHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCC-ccccccccc--ccC
Q 016903 140 TVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPISD--QFR 216 (380)
Q Consensus 140 ~~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~-~~~~~~~~~--~~~ 216 (380)
.++..||+..+.++|.+.+. .++.+|+++|||.|..... -+|.-|...+.|++++|-+|. -++++.+.. ..+
T Consensus 478 ~~~~~MG~eg~~~~G~a~f~----~~~hv~a~iGDgTffHSG~-~al~~AV~~~~nit~~IL~N~~vAMTGgQ~~~g~~~ 552 (1165)
T PRK09193 478 STFTQMGGEGVPWIGQAPFT----DEKHVFQNLGDGTYFHSGL-LAIRAAVAAGVNITYKILYNDAVAMTGGQPVDGGLS 552 (1165)
T ss_pred CeeeccCCcchhhceecccc----CCCcEEEEeccccchhcCH-HHHHHHHhcCCCeEEEEEeCCcccccCCCCCCCCcc
Confidence 34578899999999987652 3467999999999953322 347777888899888776665 567665432 234
Q ss_pred CcCHHHHHhhcCceEEEEeCCCHHHHHHH--------------HHHHHHHhhccCCcEEEEE
Q 016903 217 SDGAVVKGRAYGVRSIRVDGNDALAIYSA--------------VHAAREMAIGEGRPILIEA 264 (380)
Q Consensus 217 ~~~~~~~a~a~G~~~~~VdG~D~~av~~a--------------~~~a~~~ar~~~gP~lIe~ 264 (380)
..++....++.|++-+.|--.|+...... ++...+..|+.+|+++|..
T Consensus 553 ~~~i~~~~~a~GV~~v~vv~ddp~~~~~~~~~~~~v~~~~R~~l~~vq~~lr~~~GvsViI~ 614 (1165)
T PRK09193 553 VPQITRQLAAEGVKRIVVVTDEPEKYDGVARLAPGVTVHHRDELDAVQRELREIPGVTVLIY 614 (1165)
T ss_pred hhhHHHHHHhCCCCEEEEeCCChhhhhhccccCcCcccccHHHHHHHHHHHhcCCCcEEEEE
Confidence 56788999999998776543455444322 3333333345688888754
No 145
>cd07039 TPP_PYR_POX Pyrimidine (PYR) binding domain of POX. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites. Lactobacillus plantarum POX is a homotetramer (dimer-of-homodimers), having two active sites per homodimer lying between PYR and PP domains of differ
Probab=97.00 E-value=0.012 Score=52.09 Aligned_cols=106 Identities=16% Similarity=0.039 Sum_probs=75.8
Q ss_pred HHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCcCHHHHHhhcCc
Q 016903 150 PHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGV 229 (380)
Q Consensus 150 p~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~~~~~~~~~~~~~~~~~~a~a~G~ 229 (380)
-+|.|.|.+. +.-.++++..|=|.++ ..-++..|...++|||+|.-+........ ......|..+.++.+--
T Consensus 52 ~mA~gyar~t---g~~~v~~~t~GpG~~n---~~~~l~~A~~~~~Pvl~I~g~~~~~~~~~--~~~q~~d~~~~~~~~tk 123 (164)
T cd07039 52 FAASAEAKLT---GKLGVCLGSSGPGAIH---LLNGLYDAKRDRAPVLAIAGQVPTDELGT--DYFQEVDLLALFKDVAV 123 (164)
T ss_pred HHHHHHHHHh---CCCEEEEECCCCcHHH---HHHHHHHHHhcCCCEEEEecCCcccccCC--CCCcccCHHHHHHHhhc
Confidence 4566666553 3445666667888876 44567788889999999997655432111 11222366778888877
Q ss_pred eEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEE
Q 016903 230 RSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEAL 265 (380)
Q Consensus 230 ~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~ 265 (380)
...+++ ++.++.+++++|+..++...||+.|++-
T Consensus 124 ~~~~v~--~~~~~~~~i~~A~~~a~~~~GPV~l~iP 157 (164)
T cd07039 124 YNETVT--SPEQLPELLDRAIRTAIAKRGVAVLILP 157 (164)
T ss_pred EEEEeC--CHHHHHHHHHHHHHHHhcCCCCEEEEeC
Confidence 788888 8899999999999888888899999874
No 146
>cd07035 TPP_PYR_POX_like Pyrimidine (PYR) binding domain of POX and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) and related protiens subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. For glyoxylate carboligase, which belongs to this subfamily, but lacks this conserved glutamate, the rate of the initial TPP activation step is reduced but the ensuing steps of the enzymic reaction proceed efficiently. The PYR and PP domains have a common fold, but do not share strong sequence conservatio
Probab=96.93 E-value=0.013 Score=50.90 Aligned_cols=107 Identities=21% Similarity=0.148 Sum_probs=70.7
Q ss_pred chHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCcCHHHHHhhc
Q 016903 148 QLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAY 227 (380)
Q Consensus 148 ~lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~~~~~~~~~~~~~~~~~~a~a~ 227 (380)
...+|.|.+++. +.-.++++..|=|.++ ...++..|...++|+|+|.-+.......... ....+..+.++.+
T Consensus 46 A~~~A~g~~~~~---~~~~v~~~~~gpG~~n---~~~~l~~A~~~~~Pll~i~~~~~~~~~~~~~--~q~~d~~~~~~~~ 117 (155)
T cd07035 46 AVGMADGYARAT---GKPGVVLVTSGPGLTN---AVTGLANAYLDSIPLLVITGQRPTAGEGRGA--FQEIDQVALFRPI 117 (155)
T ss_pred HHHHHHHHHHHH---CCCEEEEEcCCCcHHH---HHHHHHHHHhhCCCEEEEeCCCccccccCCc--ccccCHHHHHHHH
Confidence 355666766653 1122333333666554 5678888999999999998765533221111 1123555666666
Q ss_pred CceEEEEeCCCHHHHHHHHHHHHHHhhcc-CCcEEEEE
Q 016903 228 GVRSIRVDGNDALAIYSAVHAAREMAIGE-GRPILIEA 264 (380)
Q Consensus 228 G~~~~~VdG~D~~av~~a~~~a~~~ar~~-~gP~lIe~ 264 (380)
--...+++ +++++...+.+|+..+... ++|+.|++
T Consensus 118 ~~~~~~i~--~~~~~~~~i~~A~~~a~~~~~gPv~l~i 153 (155)
T cd07035 118 TKWAYRVT--SPEEIPEALRRAFRIALSGRPGPVALDL 153 (155)
T ss_pred hceEEEcC--CHHHHHHHHHHHHHHhcCCCCCcEEEEe
Confidence 55577776 8899999999999988877 78999986
No 147
>cd07034 TPP_PYR_PFOR_IOR-alpha_like Pyrimidine (PYR) binding domain of pyruvate ferredoxin oxidoreductase (PFOR), indolepyruvate ferredoxin oxidoreductase alpha subunit (IOR-alpha), and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain, of pyruvate ferredoxin oxidoreductase (PFOR), indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit (IOR-alpha), and related proteins, subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. Th
Probab=96.70 E-value=0.015 Score=50.92 Aligned_cols=106 Identities=16% Similarity=0.103 Sum_probs=67.8
Q ss_pred chHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCcCHHHHHhhc
Q 016903 148 QLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAY 227 (380)
Q Consensus 148 ~lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~~~~~~~~~~~~~~~~~~a~a~ 227 (380)
...+|.|.+++ +. +.+++..|-|..+ ....|..|...+.|+|+|+-+................+....++.
T Consensus 53 A~~~A~g~~r~----~~-~v~~~~~gpG~~n---~~~~l~~a~~~~~P~v~i~g~~~~~~~~~~~~~~~~~~~~~~~~~- 123 (160)
T cd07034 53 AAEAAIGASAA----GA-RAMTATSGPGLNL---MAEALYLAAGAELPLVIVVAQRPGPSTGLPKPDQSDLMAARYGGH- 123 (160)
T ss_pred HHHHHHHHHhh----CC-cEEEeeCcchHHH---HHHHHHHHHhCCCCEEEEEeeCCCCCCCCCCcCcHHHHHHHhCCC-
Confidence 34555566553 22 2667777888876 456688888888999999976543221110000100112223333
Q ss_pred CceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEE
Q 016903 228 GVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEA 264 (380)
Q Consensus 228 G~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~ 264 (380)
.+...++. +++++.+.+++|+..++.+++|++|..
T Consensus 124 ~~~~~~~~--~~~~~~~~~~~A~~~a~~~~~Pv~l~~ 158 (160)
T cd07034 124 PWPVLAPS--SVQEAFDLALEAFELAEKYRLPVIVLS 158 (160)
T ss_pred CEEEEeCC--CHHHHHHHHHHHHHHHHHhCCCEEEEc
Confidence 36666666 899999999999999999889999864
No 148
>PF02776 TPP_enzyme_N: Thiamine pyrophosphate enzyme, N-terminal TPP binding domain; InterPro: IPR012001 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the N-terminal TPP binding domain of TPP enzymes.; GO: 0030976 thiamine pyrophosphate binding; PDB: 3HWX_1 3FLM_B 3HWW_A 2JLC_A 2JLA_A 2VBG_A 2VBF_B 2Q29_A 2Q27_B 2Q28_B ....
Probab=96.68 E-value=0.015 Score=51.69 Aligned_cols=110 Identities=21% Similarity=0.094 Sum_probs=75.1
Q ss_pred chHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCcCHHHHHhhc
Q 016903 148 QLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAY 227 (380)
Q Consensus 148 ~lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~~~~~~~~~~~~~~~~~~a~a~ 227 (380)
...+|.|.+++. +.-.++++..|=|.++ ..-+|..|...++|+|+|+-.-..........+ ...+....++.+
T Consensus 51 A~~~A~g~ar~~---g~~~v~~~~~GpG~~n---~~~~l~~A~~~~~Pvl~i~g~~~~~~~~~~~~q-~~~d~~~~~~~~ 123 (172)
T PF02776_consen 51 AAFMADGYARAT---GRPGVVIVTSGPGATN---ALTGLANAYADRIPVLVITGQRPSAGEGRGAFQ-QEIDQQSLFRPV 123 (172)
T ss_dssp HHHHHHHHHHHH---SSEEEEEEETTHHHHT---THHHHHHHHHTT-EEEEEEEESSGGGTTTTSTT-SSTHHHHHHGGG
T ss_pred hHHHHHHHHHhh---ccceEEEeecccchHH---HHHHHhhcccceeeEEEEecccchhhhcccccc-cchhhcchhccc
Confidence 355677777653 2333455555666665 345566788889999999987765443311111 123667788888
Q ss_pred CceEEEEeCCCHHHHHHHHHHHHHHh-hccCCcEEEEEEe
Q 016903 228 GVRSIRVDGNDALAIYSAVHAAREMA-IGEGRPILIEALT 266 (380)
Q Consensus 228 G~~~~~VdG~D~~av~~a~~~a~~~a-r~~~gP~lIe~~t 266 (380)
.-...++. +++++..++++|+..+ ....+|+.|++..
T Consensus 124 ~k~~~~v~--~~~~~~~~~~~A~~~a~~~~~gPv~l~ip~ 161 (172)
T PF02776_consen 124 TKWSYRVT--SPDDLPEALDRAFRAATSGRPGPVYLEIPQ 161 (172)
T ss_dssp SSEEEEEC--SGGGHHHHHHHHHHHHHHCSTSEEEEEEEH
T ss_pred cchhcccC--CHHHHHHHHHHHHHHhccCCCccEEEEcCh
Confidence 88888887 8888999999999888 6778999999853
No 149
>TIGR03845 sulfopyru_alph sulfopyruvate decarboxylase, alpha subunit. This model represents the alpha subunit, or the N-terminal region, of sulfopyruvate decarboxylase, an enzyme of coenzyme M biosynthesis. Coenzyme M is found almost exclusively in the methanogenic archaea. However, the enzyme also occurs in Roseovarius nubinhibens ISM in a degradative pathway, where the resulting sulfoacetaldehyde is desulfonated to acetyl phosphate, then converted to acetyl-CoA (see PubMed:19581363).
Probab=96.66 E-value=0.035 Score=48.98 Aligned_cols=107 Identities=16% Similarity=0.059 Sum_probs=70.5
Q ss_pred ccchHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHH-HcCCCEEEEEEcCCc-ccccccccccCCcCHH-H
Q 016903 146 ATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSA-VTEAPVIFICRNNGW-AISTPISDQFRSDGAV-V 222 (380)
Q Consensus 146 G~~lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~-~~~Lpvi~vv~NN~~-~~~~~~~~~~~~~~~~-~ 222 (380)
+.+..+|.|..++ .++.++|+.+=|-. ...-+|..|. ..++|+|+|+-.-+. +-..+. +.....+. .
T Consensus 44 e~aa~~aAg~~~~-----~~~~~v~~~~sG~g---n~~~~l~~a~~~~~~Pvl~i~g~rg~~~~~~~~--q~~~g~~~~~ 113 (157)
T TIGR03845 44 EEGVGICAGAYLA-----GKKPAILMQSSGLG---NSINALASLNKTYGIPLPILASWRGVYKEKIPA--QIPMGRATPK 113 (157)
T ss_pred HHHHHHHHHHHHh-----cCCcEEEEeCCcHH---HHHHHHHHHHHcCCCCEEEEEeccCCCCCCCcc--ccchhhhhHH
Confidence 4455666666643 45567888877733 4566777888 889999999954433 111111 11111111 2
Q ss_pred HHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEE
Q 016903 223 KGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEAL 265 (380)
Q Consensus 223 ~a~a~G~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~ 265 (380)
.....+++...++ +++++ .++.+|+..+.++++|+.|.+.
T Consensus 114 ~l~~~~i~~~~i~--~~e~~-~~i~~A~~~a~~~~gPv~il~~ 153 (157)
T TIGR03845 114 LLDTLGIPYTIPR--EPEEA-KLIEKAISDAYENSRPVAALLD 153 (157)
T ss_pred HHHHcCCCeEEeC--CHHHH-HHHHHHHHHHHhCCCCEEEEEe
Confidence 3355777888887 79999 9999999999999999998764
No 150
>cd07038 TPP_PYR_PDC_IPDC_like Pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC), indolepyruvate decarboxylase (IPDC) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites, for many
Probab=96.51 E-value=0.038 Score=48.84 Aligned_cols=109 Identities=18% Similarity=0.135 Sum_probs=72.8
Q ss_pred cchHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcccccc---ccccc---CCcCH
Q 016903 147 TQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTP---ISDQF---RSDGA 220 (380)
Q Consensus 147 ~~lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~~~~~---~~~~~---~~~~~ 220 (380)
...-+|-|.+.+. .-.++++..|=|.++ ..-++..|...+.|||+|+-+........ ..... ...+.
T Consensus 46 ~A~~mA~gyar~t----~~gv~~~t~GpG~~n---~~~gl~~A~~~~~Pvl~i~g~~~~~~~~~~~~~~~~~~~~~~~d~ 118 (162)
T cd07038 46 NAGYAADGYARVK----GLGALVTTYGVGELS---ALNGIAGAYAEHVPVVHIVGAPSTKAQASGLLLHHTLGDGDFDVF 118 (162)
T ss_pred HHHHHHHHHHHhh----CCEEEEEcCCccHHH---HHHHHHHHHHcCCCEEEEecCCCccccccccceeecccccchHHH
Confidence 3345566776653 133445555777776 44567788888999999997654321111 00001 01245
Q ss_pred HHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEE
Q 016903 221 VVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEA 264 (380)
Q Consensus 221 ~~~a~a~G~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~ 264 (380)
.+.++.+.-...+|. +++++...+++|+..+..++||+.|++
T Consensus 119 ~~~~~~~tk~~~~v~--~~~~i~~~v~~A~~~a~s~~gPV~l~i 160 (162)
T cd07038 119 LKMFEEITCAAARLT--DPENAAEEIDRVLRTALRESRPVYIEI 160 (162)
T ss_pred HHHHHhheeEEEEeC--CHHHHHHHHHHHHHHHHHCCCCEEEEc
Confidence 677777777777887 888999999999999988889999986
No 151
>TIGR02176 pyruv_ox_red pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric. This model represents a single chain form of pyruvate:ferredoxin (or flavodoxin) oxidoreductase. This enzyme may transfer electrons to nitrogenase in nitrogen-fixing species. Portions of this protein are homologous to gamma subunit of the four subunit pyruvate:ferredoxin (flavodoxin) oxidoreductase.
Probab=96.42 E-value=0.034 Score=63.60 Aligned_cols=96 Identities=16% Similarity=0.206 Sum_probs=69.7
Q ss_pred CeeEEEeCcccc-CcchHHHHHHHHHHcCCCEEEEEEcCC-ccccc-------ccc---------cccCCcCHHHHHhhc
Q 016903 166 ACAVTYFGDGGT-SEGDFHAALNFSAVTEAPVIFICRNNG-WAIST-------PIS---------DQFRSDGAVVKGRAY 227 (380)
Q Consensus 166 ~~vv~~~GDG~~-~eG~~~Eal~~A~~~~Lpvi~vv~NN~-~~~~~-------~~~---------~~~~~~~~~~~a~a~ 227 (380)
..|+++.|||.. .-|. ..+.-+...+.+|.+||-||. |+.++ |.. ......|+..++.++
T Consensus 952 ~sv~~~~GDG~~~diG~--~~l~~~~~r~~~v~~i~~dne~Y~nTggQ~S~~tp~g~~t~~~~~g~~~~kkd~~~~a~~~ 1029 (1165)
T TIGR02176 952 KSVWIIGGDGWAYDIGY--GGLDHVLASGKDVNVLVMDTEVYSNTGGQSSKATPTGAIAKFAAAGKRTSKKDLGMMAMTY 1029 (1165)
T ss_pred ceeEEEecchhhhccCc--cchHHHHHcCCCeEEEEECCcccccCCCcCCCCCCCcCccccCCCCCCCCCcCHHHHHHHC
Confidence 479999999965 5553 346667778899888887775 54432 211 112345788999999
Q ss_pred CceEE-EEe-CCCHHHHHHHHHHHHHHhhccCCcEEEEEEee
Q 016903 228 GVRSI-RVD-GNDALAIYSAVHAAREMAIGEGRPILIEALTY 267 (380)
Q Consensus 228 G~~~~-~Vd-G~D~~av~~a~~~a~~~ar~~~gP~lIe~~t~ 267 (380)
|...+ ++. |.++.++..++++|..+ +||.+|++.+.
T Consensus 1030 g~~yvA~~~~~~~~~~~~~~~~~A~~~----~G~s~i~~~~p 1067 (1165)
T TIGR02176 1030 GYVYVAQVSMGANMQQTLKAFREAEAY----DGPSIVIAYSP 1067 (1165)
T ss_pred CCCEEEEEecccCHHHHHHHHHHHHcC----CCCEEEEEECC
Confidence 98755 465 66899999999999864 89999998773
No 152
>PRK13029 2-oxoacid ferredoxin oxidoreductase; Provisional
Probab=96.37 E-value=0.018 Score=65.14 Aligned_cols=119 Identities=13% Similarity=0.027 Sum_probs=75.7
Q ss_pred cCcccccchHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCC-ccccccccc--ccCC
Q 016903 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPISD--QFRS 217 (380)
Q Consensus 141 ~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~-~~~~~~~~~--~~~~ 217 (380)
++..||+.....+|.+.+. .++.+|+++|||.|..... -+|.-|...+.|++++|-+|. -++++.+.. ..+.
T Consensus 493 ~~~~MGgeg~~~~G~a~f~----~~~hv~aniGDgTffHSG~-~alr~AV~~~~nit~kIL~N~avAMTGgQp~~G~~~v 567 (1186)
T PRK13029 493 GFSQMGGEGVAWIGQMPFS----RRRHVFQNLGDGTYFHSGL-LAIRQAIAAGVNITYKILYNDAVAMTGGQPVDGVLTV 567 (1186)
T ss_pred eeeccCcchhhheeecccC----CCCCEEEEeccccchhcCH-HHHHHHHhcCCCEEEEEEeCcchhccCCCCCCCcCCH
Confidence 4568888888888887652 3467999999999953322 347778888899888776665 466654432 2223
Q ss_pred cCHHHHHhhcCceEEEEeCCCHHHHH--------------HHHHHHHHHhhccCCcEEEEE
Q 016903 218 DGAVVKGRAYGVRSIRVDGNDALAIY--------------SAVHAAREMAIGEGRPILIEA 264 (380)
Q Consensus 218 ~~~~~~a~a~G~~~~~VdG~D~~av~--------------~a~~~a~~~ar~~~gP~lIe~ 264 (380)
+.++...++.|++-+.|--.|+.... +.+....+..|+.+|+++|..
T Consensus 568 ~~i~~~~~a~GV~~v~vv~d~p~~~~~~~~~~~gv~~~~R~~l~~vq~~lr~~~GvsViI~ 628 (1186)
T PRK13029 568 PQIARQVHAEGVRRIVVVTDEPGKYRGVARLPAGVTVHHRDELDAVQRELREVPGVSVLIY 628 (1186)
T ss_pred HHHHHHHHhCCccEEEEeCCCccccccccccCCccccccHHHHHHHHHHHhcCCCcEEEEE
Confidence 34445779999987765322343332 233333333345678887743
No 153
>cd07037 TPP_PYR_MenD Pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate synthase (MenD) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate (SEPHCHC) synthase (MenD) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dim
Probab=95.82 E-value=0.057 Score=47.87 Aligned_cols=107 Identities=13% Similarity=0.063 Sum_probs=66.2
Q ss_pred hHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCcCHHHHHhhcC
Q 016903 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 228 (380)
Q Consensus 149 lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~~~~~~~~~~~~~~~~~~a~a~G 228 (380)
.-+|-|.|.+. +.-.++++..|=|.++ ..-++..|...+.|+|+|+-+-....... ......|....++.+-
T Consensus 48 ~~mAdgyar~s---g~~gv~~~t~GpG~~n---~~~gl~~A~~~~~Pvl~i~g~~~~~~~~~--~~~q~~d~~~l~~~vt 119 (162)
T cd07037 48 AFFALGLAKAS---GRPVAVVCTSGTAVAN---LLPAVVEAYYSGVPLLVLTADRPPELRGT--GANQTIDQVGLFGDYV 119 (162)
T ss_pred HHHHHHHHHhh---CCCEEEEECCchHHHH---HhHHHHHHHhcCCCEEEEECCCCHHhcCC--CCCcccchhhhcccee
Confidence 44566766543 3444556666777776 34567778888999999997544322111 1111234445566555
Q ss_pred ceEEEEeCCCHHH------HHHHHHHHHHHhhccC-CcEEEEEE
Q 016903 229 VRSIRVDGNDALA------IYSAVHAAREMAIGEG-RPILIEAL 265 (380)
Q Consensus 229 ~~~~~VdG~D~~a------v~~a~~~a~~~ar~~~-gP~lIe~~ 265 (380)
-...+|. ++++ +...+++|+..++.+. ||++|++-
T Consensus 120 k~~~~v~--~~~~~~~~~~~~~~i~~A~~~A~~~~~GPv~l~iP 161 (162)
T cd07037 120 RWSVDLP--PPEDDDDLWYLLRLANRAVLEALSAPPGPVHLNLP 161 (162)
T ss_pred eEEEecC--CcccchhHHHHHHHHHHHHHHHhCCCCCCEEEecc
Confidence 4555664 4444 6777788887777764 89999873
No 154
>COG0028 IlvB Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=95.01 E-value=0.19 Score=53.23 Aligned_cols=108 Identities=19% Similarity=0.160 Sum_probs=78.2
Q ss_pred hHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCcCHHHHHhhcC
Q 016903 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 228 (380)
Q Consensus 149 lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~~~~~~~~~~~~~~~~~~a~a~G 228 (380)
.-+|-|.|.+ .++-.+|++..|=|+++ ..-.|..|..-..|+|.|.-.-.... ...+.+...|...+++.+-
T Consensus 52 a~mAdgyar~---TGkpgV~~~tsGPGatN---~~tgla~A~~d~~Pll~itGqv~~~~--~g~~afQe~D~~~l~~p~t 123 (550)
T COG0028 52 AFAADGYARA---TGKPGVCLVTSGPGATN---LLTGLADAYMDSVPLLAITGQVPTSL--IGTDAFQEVDQVGLFRPIT 123 (550)
T ss_pred HHHHHHHHHH---cCCCEEEEECCCCcHHH---HHHHHHHHHhcCCCEEEEeCCccccc--cCcchhhhcchhhHhhhhh
Confidence 4456666544 46678899999999997 45668888888999999886221111 1111222236777777777
Q ss_pred ceEEEEeCCCHHHHHHHHHHHHHHhhccC-CcEEEEEEe
Q 016903 229 VRSIRVDGNDALAIYSAVHAAREMAIGEG-RPILIEALT 266 (380)
Q Consensus 229 ~~~~~VdG~D~~av~~a~~~a~~~ar~~~-gP~lIe~~t 266 (380)
-...+|. +++++...+++|+..|.+++ ||++|++-.
T Consensus 124 k~~~~v~--~~~~ip~~i~~Af~~A~sgrpGpv~i~iP~ 160 (550)
T COG0028 124 KYNFEVR--SPEDIPEVVARAFRIALSGRPGPVVVDLPK 160 (550)
T ss_pred eeEEEeC--CHHHHHHHHHHHHHHHhcCCCceEEEEcCh
Confidence 7777887 99999999999999999887 999998754
No 155
>TIGR03254 oxalate_oxc oxalyl-CoA decarboxylase. In a number of bacteria, including Oxalobacter formigenes from the human gut, a two-gene operon of oxc (oxalyl-CoA decarboxylase) and frc (formyl-CoA transferase) encodes a system for degrading and therefore detoxifying oxalate. Members of this family are the thiamine pyrophosphate (TPP)-containing enzyme oxalyl-CoA decarboxylase.
Probab=94.99 E-value=0.2 Score=52.81 Aligned_cols=110 Identities=15% Similarity=0.116 Sum_probs=75.0
Q ss_pred hHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCcCHHHHHhhcC
Q 016903 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 228 (380)
Q Consensus 149 lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~~~~~~~~~~~~~~~~~~a~a~G 228 (380)
.-+|-|.|.+. +.-.++++..|=|.++ ..-++..|..-++|||+|+-.............+...|....++.+-
T Consensus 53 ~~mAdgyar~t---g~~gv~~~t~GPG~~N---~~~gia~A~~~~~Pvl~I~G~~~~~~~~~~~~~~q~~d~~~~~~~vt 126 (554)
T TIGR03254 53 GYAAAAAGFLT---QKPGVCLTVSAPGFLN---GLTALANATTNCFPMIMISGSSERHIVDLQQGDYEEMDQLAAAKPFA 126 (554)
T ss_pred HHHHHHHHHHh---CCCEEEEEccCccHHh---HHHHHHHHHhcCCCEEEEEccCCccccccCCCCcchhhHHHHhhhhh
Confidence 34566666553 3445667777999887 34567788888999999997554331110111122235667788777
Q ss_pred ceEEEEeCCCHHHHHHHHHHHHHHhhcc-CCcEEEEEEe
Q 016903 229 VRSIRVDGNDALAIYSAVHAAREMAIGE-GRPILIEALT 266 (380)
Q Consensus 229 ~~~~~VdG~D~~av~~a~~~a~~~ar~~-~gP~lIe~~t 266 (380)
-...+|+ ++.++.+.+.+|+..+..+ .||+.|++..
T Consensus 127 k~~~~v~--~~~~~~~~i~rA~~~A~~~~pGPV~l~iP~ 163 (554)
T TIGR03254 127 KAAYRVL--RAEDIGIGIARAIRTAVSGRPGGVYLDLPA 163 (554)
T ss_pred eeEEEcC--CHHHHHHHHHHHHHHHhcCCCCcEEEEcCH
Confidence 7788888 8999999999999888775 4899998764
No 156
>PRK08611 pyruvate oxidase; Provisional
Probab=94.97 E-value=0.23 Score=52.74 Aligned_cols=108 Identities=14% Similarity=0.043 Sum_probs=75.2
Q ss_pred hHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCcCHHHHHhhcC
Q 016903 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 228 (380)
Q Consensus 149 lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~~~~~~~~~~~~~~~~~~a~a~G 228 (380)
.-+|.|.|.+ .+.-.++++..|=|.++ ..-++..|...++|||+|+-......... ......|..+.++.+-
T Consensus 56 ~~mAdgyar~---tg~~gv~~~t~GPG~~N---~l~gla~A~~~~~Pvl~ItG~~~~~~~~~--~~~q~~d~~~l~~~it 127 (576)
T PRK08611 56 ALAAAAYAKL---TGKIGVCLSIGGPGAIH---LLNGLYDAKMDHVPVLALAGQVTSDLLGT--DFFQEVNLEKMFEDVA 127 (576)
T ss_pred HHHHHHHHHH---hCCceEEEECCCCcHHH---HHHHHHHHhhcCCCEEEEecCCcccccCC--CCccccCHHHHhhccc
Confidence 4456666654 34445666667998887 34567778889999999997654432211 1112235667777776
Q ss_pred ceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEe
Q 016903 229 VRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALT 266 (380)
Q Consensus 229 ~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t 266 (380)
--..+|+ +++.+..++.+|+..+..+.||+.|++-.
T Consensus 128 k~~~~v~--~~~~~~~~l~~A~~~A~~~~GPV~l~iP~ 163 (576)
T PRK08611 128 VYNHQIM--SAENLPEIVNQAIRTAYEKKGVAVLTIPD 163 (576)
T ss_pred ceeEEeC--CHHHHHHHHHHHHHHHhhCCCCEEEEeCh
Confidence 6666776 88899999999998888888999998754
No 157
>PRK07119 2-ketoisovalerate ferredoxin reductase; Validated
Probab=94.90 E-value=0.29 Score=48.85 Aligned_cols=111 Identities=14% Similarity=0.077 Sum_probs=77.4
Q ss_pred chHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCcCHHHHHh--
Q 016903 148 QLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGR-- 225 (380)
Q Consensus 148 ~lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~~~~~~~~~~~~~~~~~~a~-- 225 (380)
.+.+|+|+++| +.++++.+-++.+. ..+|.+.+|+-..+|+++++.+-. + |.... ...+-.++.-
T Consensus 60 A~~~a~GAs~a------G~Ra~taTSg~Gl~--lm~E~l~~a~~~e~P~v~v~v~R~-~---p~~g~-t~~eq~D~~~~~ 126 (352)
T PRK07119 60 AINMVYGAAAT------GKRVMTSSSSPGIS--LKQEGISYLAGAELPCVIVNIMRG-G---PGLGN-IQPSQGDYFQAV 126 (352)
T ss_pred HHHHHHHHHhh------CCCEEeecCcchHH--HHHHHHHHHHHccCCEEEEEeccC-C---CCCCC-CcchhHHHHHHH
Confidence 36778888887 45688888777775 478999999999999888887654 1 11111 1112222211
Q ss_pred ------hcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCCCCCCC
Q 016903 226 ------AYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTS 275 (380)
Q Consensus 226 ------a~G~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t~R~~gHs~~ 275 (380)
-++|.++ +-.|+.++++....|++.+.+..-|+++-..++ -+|+..
T Consensus 127 ~~~ghgd~~~~vl--~p~~~qEa~d~~~~Af~lAE~~~~PViv~~D~~--lsh~~~ 178 (352)
T PRK07119 127 KGGGHGDYRLIVL--APSSVQEMVDLTMLAFDLADKYRNPVMVLGDGV--LGQMME 178 (352)
T ss_pred hcCCCCCcceEEE--eCCCHHHHHHHHHHHHHHHHHhCCCEEEEcchh--hhCcee
Confidence 2235544 555999999999999998888889999988884 367643
No 158
>PRK08659 2-oxoglutarate ferredoxin oxidoreductase subunit alpha; Validated
Probab=94.86 E-value=0.21 Score=50.29 Aligned_cols=116 Identities=18% Similarity=0.228 Sum_probs=76.3
Q ss_pred chHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcccc-cccccccCCcCHH-HHHh
Q 016903 148 QLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAIS-TPISDQFRSDGAV-VKGR 225 (380)
Q Consensus 148 ~lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~~~-~~~~~~~~~~~~~-~~a~ 225 (380)
.+.+|+|+++| +.++++.+-=+++. ..+|.+.+|+-..+|+|+++.+.....+ -++. ....|+. .+..
T Consensus 60 A~~~a~GAs~a------G~Ra~TaTSg~Gl~--lm~E~~~~a~~~e~P~Viv~~~R~gp~tg~p~~--~~q~D~~~~~~~ 129 (376)
T PRK08659 60 SMAAVIGASWA------GAKAMTATSGPGFS--LMQENIGYAAMTETPCVIVNVQRGGPSTGQPTK--PAQGDMMQARWG 129 (376)
T ss_pred HHHHHHhHHhh------CCCeEeecCCCcHH--HHHHHHHHHHHcCCCEEEEEeecCCCCCCCCCC--cCcHHHHHHhcc
Confidence 47788888887 33455554444443 3679999999999998888877542111 1111 1112222 3333
Q ss_pred hcC-ceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCCCCCCC
Q 016903 226 AYG-VRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTS 275 (380)
Q Consensus 226 a~G-~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t~R~~gHs~~ 275 (380)
++| .+.+.+...|+.++++....|++.+.+.+-|++|-..++ -+|+..
T Consensus 130 ~hgd~~~ivl~p~~~QEa~d~~~~Af~lAE~~~~PViv~~D~~--lsh~~~ 178 (376)
T PRK08659 130 THGDHPIIALSPSSVQECFDLTIRAFNLAEKYRTPVIVLADEV--VGHMRE 178 (376)
T ss_pred cCCCcCcEEEeCCCHHHHHHHHHHHHHHHHHHCCCEEEEechH--hhCCcc
Confidence 333 333555666999999999999999888889999998883 667653
No 159
>PRK07525 sulfoacetaldehyde acetyltransferase; Validated
Probab=94.70 E-value=0.29 Score=52.11 Aligned_cols=107 Identities=16% Similarity=0.119 Sum_probs=71.5
Q ss_pred HHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCcCHHHHHhhcCc
Q 016903 150 PHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGV 229 (380)
Q Consensus 150 p~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~~~~~~~~~~~~~~~~~~a~a~G~ 229 (380)
-+|.|.|.+. +.-.++++..|=|.++ ..-++..|...++|||+|+-.-...... ...+...+....++.+--
T Consensus 57 ~~Adgyar~t---g~~gv~~~t~GPG~~n---~~~gi~~A~~~~~Pvl~I~g~~~~~~~~--~~~~q~~d~~~l~~~~tk 128 (588)
T PRK07525 57 HMADGYTRVT---GRMGMVIGQNGPGITN---FVTAVATAYWAHTPVVLVTPQAGTKTIG--QGGFQEAEQMPMFEDMTK 128 (588)
T ss_pred HHHHHHHHHh---CCCEEEEEcCCccHHH---HHHHHHHHhhcCCCEEEEeCCCCcccCC--CCCCcccchhhhhhhhee
Confidence 4566666543 3345666777999886 4456777888899999998322211000 011111245566776655
Q ss_pred eEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEe
Q 016903 230 RSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALT 266 (380)
Q Consensus 230 ~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t 266 (380)
...++. ++..+...+++|+..++.+.||+.|++..
T Consensus 129 ~~~~i~--~~~~~~~~i~rA~~~A~~~~GPV~i~iP~ 163 (588)
T PRK07525 129 YQEEVR--DPSRMAEVLNRVFDKAKRESGPAQINIPR 163 (588)
T ss_pred EEEECC--CHHHHHHHHHHHHHHHhcCCCCEEEEcCh
Confidence 666676 88999999999999888889999998864
No 160
>PRK07524 hypothetical protein; Provisional
Probab=94.61 E-value=0.33 Score=50.99 Aligned_cols=111 Identities=17% Similarity=0.030 Sum_probs=76.2
Q ss_pred chHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCccccccc-ccccCCcCHHHHHhh
Q 016903 148 QLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPI-SDQFRSDGAVVKGRA 226 (380)
Q Consensus 148 ~lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~~~~~~-~~~~~~~~~~~~a~a 226 (380)
..-+|.|.|... +.-.++++..|=|.++ ..-++..|..-++|||+|+-.......... .......|....++.
T Consensus 51 A~~mAdgyar~t---g~~gv~~~t~GpG~~n---~~~gi~~A~~~~~Pvl~i~G~~~~~~~~~~~~~~~~~~d~~~l~~~ 124 (535)
T PRK07524 51 AGFMADGYARVS---GKPGVCFIITGPGMTN---IATAMGQAYADSIPMLVISSVNRRASLGKGRGKLHELPDQRAMVAG 124 (535)
T ss_pred HHHHHHHHHHHh---CCCeEEEECCCccHHH---HHHHHHHHHhcCCCEEEEeCCCChhhcCCCCccccccccHHHHhhh
Confidence 345566666543 3445677777888886 446688888899999999864432211110 000112366778888
Q ss_pred cCceEEEEeCCCHHHHHHHHHHHHHHhhcc-CCcEEEEEEe
Q 016903 227 YGVRSIRVDGNDALAIYSAVHAAREMAIGE-GRPILIEALT 266 (380)
Q Consensus 227 ~G~~~~~VdG~D~~av~~a~~~a~~~ar~~-~gP~lIe~~t 266 (380)
+--...+|. +++.+...+.+|+..++.+ .||+.|++-.
T Consensus 125 ~tk~~~~v~--~~~~~~~~l~~A~~~A~~~~~GPV~l~iP~ 163 (535)
T PRK07524 125 VAAFSHTLM--SAEDLPEVLARAFAVFDSARPRPVHIEIPL 163 (535)
T ss_pred hceeEEEeC--CHHHHHHHHHHHHHHHhcCCCCcEEEEeCH
Confidence 877778887 8999999999999988876 5999998864
No 161
>PRK09259 putative oxalyl-CoA decarboxylase; Validated
Probab=94.50 E-value=0.34 Score=51.32 Aligned_cols=110 Identities=16% Similarity=0.132 Sum_probs=73.2
Q ss_pred hHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCcCHHHHHhhcC
Q 016903 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 228 (380)
Q Consensus 149 lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~~~~~~~~~~~~~~~~~~a~a~G 228 (380)
.-+|-|.+.+. +.-.++++..|=|.++ ..-++..|..-++|||+|+-.-...............|....++.+-
T Consensus 60 ~~mAdgyar~t---g~~gv~~~t~GPG~~N---~l~gl~~A~~~~~Pvl~I~G~~~~~~~~~~~~~~q~~d~~~~~~~~t 133 (569)
T PRK09259 60 GNAAAAAGFLT---QKPGVCLTVSAPGFLN---GLTALANATTNCFPMIMISGSSEREIVDLQQGDYEELDQLNAAKPFC 133 (569)
T ss_pred HHHHHHHHHHh---CCCEEEEEcCCccHHH---HHHHHHHHHhcCCCEEEEEccCCcccccccCCCccccchhhhhhhhe
Confidence 34455665543 3345666667888886 34567788889999999986543221000011112235566777776
Q ss_pred ceEEEEeCCCHHHHHHHHHHHHHHhhcc-CCcEEEEEEe
Q 016903 229 VRSIRVDGNDALAIYSAVHAAREMAIGE-GRPILIEALT 266 (380)
Q Consensus 229 ~~~~~VdG~D~~av~~a~~~a~~~ar~~-~gP~lIe~~t 266 (380)
-...+|+ ++.++...+.+|+..|..+ .||+.|++..
T Consensus 134 k~s~~v~--~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~ 170 (569)
T PRK09259 134 KAAFRVN--RAEDIGIGVARAIRTAVSGRPGGVYLDLPA 170 (569)
T ss_pred eeeEEcC--CHHHHHHHHHHHHHHhhhCCCCcEEEEeCH
Confidence 6777787 8999999999999888776 5899998863
No 162
>PRK06457 pyruvate dehydrogenase; Provisional
Probab=94.38 E-value=0.38 Score=50.74 Aligned_cols=107 Identities=16% Similarity=0.021 Sum_probs=71.8
Q ss_pred HHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCcCHHHHHhhcCc
Q 016903 150 PHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGV 229 (380)
Q Consensus 150 p~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~~~~~~~~~~~~~~~~~~a~a~G~ 229 (380)
-+|.|.|.+. +.-.++++..|=|.++ ..-++..|..-+.|||+|+-.-...... .......|....++.+--
T Consensus 53 ~mAdgyar~t---gkpgv~~~t~GPG~~N---~l~~l~~A~~~~~Pvl~i~G~~~~~~~~--~~~~q~~d~~~l~~~vtk 124 (549)
T PRK06457 53 LAASVEAKIT---GKPSACMGTSGPGSIH---LLNGLYDAKMDHAPVIALTGQVESDMIG--HDYFQEVNLTKLFDDVAV 124 (549)
T ss_pred HHHHHHHHHh---CCCeEEEeCCCCchhh---hHHHHHHHHhcCCCEEEEecCCCccccC--CCcccccchhhhhcccee
Confidence 4566666543 4445666677888886 4566778888899999999653322111 111112245556665555
Q ss_pred eEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEe
Q 016903 230 RSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALT 266 (380)
Q Consensus 230 ~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t 266 (380)
...+|. ++.++...+++|+..+....||+.|++-.
T Consensus 125 ~~~~v~--~~~~~~~~i~~A~~~a~~~~GPV~l~iP~ 159 (549)
T PRK06457 125 FNQILI--NPENAEYIIRRAIREAISKRGVAHINLPV 159 (549)
T ss_pred EEEEeC--CHHHHHHHHHHHHHHHhcCCCCEEEEeCH
Confidence 556666 88899999999998888888999999864
No 163
>PRK07064 hypothetical protein; Provisional
Probab=94.36 E-value=0.41 Score=50.32 Aligned_cols=110 Identities=17% Similarity=0.111 Sum_probs=73.3
Q ss_pred hHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcccccccccc-cCCcCHHHHHhhc
Q 016903 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQ-FRSDGAVVKGRAY 227 (380)
Q Consensus 149 lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~~~~~~~~~-~~~~~~~~~a~a~ 227 (380)
.-+|.|.|.+. +.-.++++..|=|.++ ..-++..|..-+.|||+|+-+-........... ....|..+.++.+
T Consensus 54 ~~~A~gyar~t---g~~~v~~~t~GpG~~N---~~~~i~~A~~~~~Pvl~i~g~~~~~~~~~~~~~~~~~~d~~~~~~~~ 127 (544)
T PRK07064 54 VNMADAHARVS---GGLGVALTSTGTGAGN---AAGALVEALTAGTPLLHITGQIETPYLDQDLGYIHEAPDQLTMLRAV 127 (544)
T ss_pred HHHHHHHHHhc---CCCeEEEeCCCCcHHH---HHHHHHHHHhcCCCEEEEeCCCCcccccCCCcccccccCHHHHhhhh
Confidence 34566766543 3445667777988887 446677788899999999964221111100000 1123566777777
Q ss_pred CceEEEEeCCCHHHHHHHHHHHHHHhhcc-CCcEEEEEEe
Q 016903 228 GVRSIRVDGNDALAIYSAVHAAREMAIGE-GRPILIEALT 266 (380)
Q Consensus 228 G~~~~~VdG~D~~av~~a~~~a~~~ar~~-~gP~lIe~~t 266 (380)
--...+|+ ++.++..++.+|+..+..+ .||+.|++-.
T Consensus 128 tk~~~~v~--~~~~~~~~i~~A~~~a~~~~~GPV~l~iP~ 165 (544)
T PRK07064 128 SKAAFRVR--SAETALATIREAVRVALTAPTGPVSVEIPI 165 (544)
T ss_pred cceEEEeC--CHHHHHHHHHHHHHHhccCCCCcEEEEeCH
Confidence 66677776 8889999999999887776 6999998864
No 164
>TIGR03457 sulphoacet_xsc sulfoacetaldehyde acetyltransferase. Members of this protein family are sulfoacetaldehyde acetyltransferase, an enzyme of taurine utilization. Taurine, or 2-aminoethanesulfonate, can be used by bacteria as a source of carbon, nitrogen, and sulfur.
Probab=94.26 E-value=0.35 Score=51.40 Aligned_cols=108 Identities=15% Similarity=0.072 Sum_probs=71.9
Q ss_pred hHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCcCHHHHHhhcC
Q 016903 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 228 (380)
Q Consensus 149 lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~~~~~~~~~~~~~~~~~~a~a~G 228 (380)
.-+|.|.|.+ .+.-.++++..|=|.++ ..-++..|..-+.|||+|.-.-..... ....+...|....++.+-
T Consensus 52 ~~~Adgyar~---tg~~gv~~~t~GPG~~N---~~~gla~A~~~~~Pvl~I~g~~~~~~~--~~~~~Q~~d~~~l~~~vt 123 (579)
T TIGR03457 52 GHMADGFARV---TGRMSMVIGQNGPGVTN---CVTAIAAAYWAHTPVVIVTPEAGTKTI--GLGGFQEADQLPMFQEFT 123 (579)
T ss_pred HHHHHHHHHH---hCCCEEEEECCCchHHH---HHHHHHHHhhcCCCEEEEeCCCccccC--CCCCCcccchhhhhhcce
Confidence 3456666654 24445666667999886 345677888889999999732211100 011111225556677666
Q ss_pred ceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEe
Q 016903 229 VRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALT 266 (380)
Q Consensus 229 ~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t 266 (380)
-...+|. ++.++...+++|+..+..+.||+.|++-.
T Consensus 124 k~~~~v~--~~~~~~~~i~~A~~~A~~~~GPV~l~iP~ 159 (579)
T TIGR03457 124 KYQGHVR--HPSRMAEVLNRCFERAWREMGPAQLNIPR 159 (579)
T ss_pred eEEEecC--CHHHHHHHHHHHHHHHhcCCCCEEEEeCc
Confidence 6666776 88999999999998888888999998864
No 165
>PRK07979 acetolactate synthase 3 catalytic subunit; Validated
Probab=94.24 E-value=0.36 Score=51.22 Aligned_cols=109 Identities=17% Similarity=0.143 Sum_probs=75.7
Q ss_pred hHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCcCHHHHHhhcC
Q 016903 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 228 (380)
Q Consensus 149 lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~~~~~~~~~~~~~~~~~~a~a~G 228 (380)
.-+|-|.|.+. +.-.++++..|=|.++ ..-++..|...++|||+|+-.-...... ...+...|....++.+-
T Consensus 55 ~~mAdgYar~t---g~~gv~~~t~GPG~~n---~l~gi~~A~~~~~Pvl~i~G~~~~~~~~--~~~~q~~d~~~l~~~~t 126 (574)
T PRK07979 55 VHMADGLARAT---GEVGVVLVTSGPGATN---AITGIATAYMDSIPLVVLSGQVATSLIG--YDAFQECDMVGISRPVV 126 (574)
T ss_pred HHHHHHHHHHh---CCceEEEECCCccHhh---hHHHHHHHhhcCCCEEEEECCCChhccC--CCCCceecHHHHhhccc
Confidence 34566666543 4456777778999886 3456777888899999998654322211 11122235667777776
Q ss_pred ceEEEEeCCCHHHHHHHHHHHHHHhhccC-CcEEEEEEee
Q 016903 229 VRSIRVDGNDALAIYSAVHAAREMAIGEG-RPILIEALTY 267 (380)
Q Consensus 229 ~~~~~VdG~D~~av~~a~~~a~~~ar~~~-gP~lIe~~t~ 267 (380)
-...+|. +++++...+++|+..++.+. ||+.|++-..
T Consensus 127 k~~~~v~--~~~~~~~~l~~A~~~A~~~~~GPv~l~iP~D 164 (574)
T PRK07979 127 KHSFLVK--QTEDIPQVLKKAFWLAASGRPGPVVVDLPKD 164 (574)
T ss_pred ceEEEeC--CHHHHHHHHHHHHHHHccCCCCcEEEEcChh
Confidence 6677776 89999999999998888875 9999988653
No 166
>TIGR03297 Ppyr-DeCO2ase phosphonopyruvate decarboxylase. This family consists of examples of phosphonopyruvate an decarboxylase enzyme that produces phosphonoacetaldehyde (Pald), the second step in the biosynthesis phosphonate-containing compounds. Since the preceding enzymate step, PEP phosphomutase (AepX, TIGR02320) favors the substrate PEP energetically, the decarboxylase is required to drive the reaction in the direction of phosphonate production. Pald is a precursor of natural products including antibiotics like bialaphos and phosphonothricin in Streptomyces species, phosphonate-modified molecules such as the polysaccharide B of Bacteroides fragilis, the phosphonolipids of Tetrahymena pyroformis, the glycosylinositolphospholipids of Trypanosoma cruzi. This gene generally occurs in prokaryotic organisms adjacent to the gene for AepX. Most often an aminotansferase (aepZ) is also present which leads to the production of the most common phosphonate compound, 2-aminoethylphosphonate (A
Probab=94.22 E-value=0.21 Score=49.97 Aligned_cols=114 Identities=17% Similarity=0.173 Sum_probs=72.2
Q ss_pred cccccchHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHH-HH--HHHcCCCEEEEEEcCCccc-c-cccccccCC
Q 016903 143 STIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAAL-NF--SAVTEAPVIFICRNNGWAI-S-TPISDQFRS 217 (380)
Q Consensus 143 g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal-~~--A~~~~Lpvi~vv~NN~~~~-~-~~~~~~~~~ 217 (380)
..=|.++++|.|+.+|. +++.++++=-.++. .....| .+ ...|++|++++|-.-+.-- . .|++.. -+
T Consensus 33 ~~E~~av~iaaG~~lat-----G~~~~v~mQnSGlG--n~vN~l~SL~~~~~y~iP~l~~i~~RG~~g~~depqh~~-~G 104 (361)
T TIGR03297 33 ANEGAAVGLAAGAYLAT-----GKRAAVYMQNSGLG--NAVNPLTSLADTEVYDIPLLLIVGWRGEPGVHDEPQHVK-QG 104 (361)
T ss_pred CCchHHHHHHHHHHHhc-----CCccEEEEecCchh--hhhhHHHhhccccccCcCeeEEEecCCCCCCCCCchhhH-Hh
Confidence 34577788888888872 34444443222221 111222 22 4568999999997665421 1 222211 12
Q ss_pred cCHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEE
Q 016903 218 DGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEAL 265 (380)
Q Consensus 218 ~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~ 265 (380)
.-.....+++|++...++ .+.++....+.+|++++.+.++|+.|.+.
T Consensus 105 ~~t~~lL~~~~i~~~~~~-~~~~~~~~~~~~a~~~~~~~~~p~a~l~~ 151 (361)
T TIGR03297 105 RITLSLLDALEIPWEVLS-TDNDEALAQIERALAHALATSRPYALVVR 151 (361)
T ss_pred HHHHHHHHHcCCCEEECC-CChHHHHHHHHHHHHHHHHHCCCEEEEEc
Confidence 334578899999999994 35667888888888888888999888664
No 167
>PRK08266 hypothetical protein; Provisional
Probab=94.19 E-value=0.43 Score=50.16 Aligned_cols=111 Identities=16% Similarity=0.079 Sum_probs=73.7
Q ss_pred hHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcccccccccc-cCCcCHHHHHhhc
Q 016903 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQ-FRSDGAVVKGRAY 227 (380)
Q Consensus 149 lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~~~~~~~~~-~~~~~~~~~a~a~ 227 (380)
.-+|.|.|.+. +.-.++++..|=|.++ ..-++..|..-++|||+|+-.-..........+ ....|....++.+
T Consensus 56 ~~~A~gyar~t---g~~~v~~~t~GpG~~N---~~~gi~~A~~~~~Pvl~i~g~~~~~~~~~~~~~~~~~~d~~~~~~~~ 129 (542)
T PRK08266 56 GYMAFGYARST---GRPGVCSVVPGPGVLN---AGAALLTAYGCNSPVLCLTGQIPSALIGKGRGHLHEMPDQLATLRSF 129 (542)
T ss_pred HHHHHHHHHHh---CCCeEEEECCCCcHHH---HHHHHHHHHhhCCCEEEEecCCChhhccCCCCcceecccHhhHHhhh
Confidence 33667776553 3334566667998886 446677888899999999853221111110001 1113566777877
Q ss_pred CceEEEEeCCCHHHHHHHHHHHHHHhhcc-CCcEEEEEEee
Q 016903 228 GVRSIRVDGNDALAIYSAVHAAREMAIGE-GRPILIEALTY 267 (380)
Q Consensus 228 G~~~~~VdG~D~~av~~a~~~a~~~ar~~-~gP~lIe~~t~ 267 (380)
--...+|+ +++++...+++|+..++.+ .||+.|++-..
T Consensus 130 tk~~~~v~--~~~~~~~~l~~A~~~a~~~~~GPV~l~iP~d 168 (542)
T PRK08266 130 TKWAERIE--HPSEAPALVAEAFQQMLSGRPRPVALEMPWD 168 (542)
T ss_pred cceEEEeC--CHHHHHHHHHHHHHHHhhCCCCcEEEEeCHh
Confidence 66777887 8899999999999888775 58999998753
No 168
>PRK11269 glyoxylate carboligase; Provisional
Probab=94.07 E-value=0.47 Score=50.51 Aligned_cols=109 Identities=15% Similarity=0.141 Sum_probs=73.3
Q ss_pred hHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCcCHHHHHhhcC
Q 016903 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 228 (380)
Q Consensus 149 lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~~~~~~~~~~~~~~~~~~a~a~G 228 (380)
.-+|.|.|.+.. ++-.++++..|=|.++ ..-++..|..-++|||+|.-......... ..+...|....++.+-
T Consensus 55 ~~mAdGYar~t~--g~~gv~~~t~GPG~~N---~l~gl~~A~~~~~Pvl~I~G~~~~~~~~~--~~~q~~d~~~l~~~it 127 (591)
T PRK11269 55 SHMAEGYTRATA--GNIGVCIGTSGPAGTD---MITGLYSASADSIPILCITGQAPRARLHK--EDFQAVDIESIAKPVT 127 (591)
T ss_pred HHHHHHHHHHcC--CCcEEEEECCCCcHHH---HHHHHHHHhhcCCCEEEEecCCCccccCC--CcccccChhhHhhcce
Confidence 345666665421 3344566667888886 34567778888999999986544322111 1112235566777666
Q ss_pred ceEEEEeCCCHHHHHHHHHHHHHHhhccC-CcEEEEEEe
Q 016903 229 VRSIRVDGNDALAIYSAVHAAREMAIGEG-RPILIEALT 266 (380)
Q Consensus 229 ~~~~~VdG~D~~av~~a~~~a~~~ar~~~-gP~lIe~~t 266 (380)
-...+|. +++++..++++|+..++.+. ||+.|++-.
T Consensus 128 k~s~~v~--~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~ 164 (591)
T PRK11269 128 KWAVTVR--EPALVPRVFQQAFHLMRSGRPGPVLIDLPF 164 (591)
T ss_pred eEEEEcC--CHHHHHHHHHHHHHHHhhCCCCeEEEEeCh
Confidence 6666776 89999999999999888774 899999874
No 169
>PRK06112 acetolactate synthase catalytic subunit; Validated
Probab=94.03 E-value=0.43 Score=50.63 Aligned_cols=108 Identities=18% Similarity=0.089 Sum_probs=73.3
Q ss_pred hHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCcCHHHHHhhcC
Q 016903 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 228 (380)
Q Consensus 149 lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~~~~~~~~~~~~~~~~~~a~a~G 228 (380)
.-+|.|.|.+. +.-.++++..|=|.++ ..-++..|..-++|||+|+-.-...... .......|....++.+-
T Consensus 62 ~~~Adgyar~t---g~~gv~~~t~GpG~~N---~~~gl~~A~~~~~Pvl~I~G~~~~~~~~--~~~~Q~~d~~~l~~~vt 133 (578)
T PRK06112 62 GAMADGYARVS---GKVAVVTAQNGPAATL---LVAPLAEALKASVPIVALVQDVNRDQTD--RNAFQELDHIALFQSCT 133 (578)
T ss_pred HHHHHHHHHHh---CCCEEEEeCCCCcHHH---HHHHHHHHhhcCCCEEEEecCCccccCC--CCCccccChhhhhcccc
Confidence 34566766543 4445666677888876 3466777888999999999543221111 11111235566777777
Q ss_pred ceEEEEeCCCHHHHHHHHHHHHHHhhccC-CcEEEEEEe
Q 016903 229 VRSIRVDGNDALAIYSAVHAAREMAIGEG-RPILIEALT 266 (380)
Q Consensus 229 ~~~~~VdG~D~~av~~a~~~a~~~ar~~~-gP~lIe~~t 266 (380)
-...+|+ +++++...+.+|+..++.+. ||+.|++-.
T Consensus 134 k~~~~v~--~~~~~~~~i~~A~~~A~~~~~GPv~l~iP~ 170 (578)
T PRK06112 134 KWVRRVT--VAERIDDYVDQAFTAATSGRPGPVVLLLPA 170 (578)
T ss_pred ceEEEeC--CHHHHHHHHHHHHHHHhhCCCCcEEEEcCH
Confidence 6777777 88999999999998888874 899998864
No 170
>PRK06456 acetolactate synthase catalytic subunit; Reviewed
Probab=94.02 E-value=0.43 Score=50.58 Aligned_cols=108 Identities=19% Similarity=0.086 Sum_probs=72.7
Q ss_pred hHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCcCHHHHHhhcC
Q 016903 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 228 (380)
Q Consensus 149 lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~~~~~~~~~~~~~~~~~~a~a~G 228 (380)
.-+|.|.|... +.-.++++..|=|.++ ..-++..|..-++|||+|.-.-....... ......|....++.+-
T Consensus 56 ~~~Adgyar~t---g~~gv~~~t~GpG~~N---~l~gi~~A~~~~~Pvl~i~G~~~~~~~~~--~~~q~~d~~~i~~~~t 127 (572)
T PRK06456 56 AHAADGYARAS---GVPGVCTATSGPGTTN---LVTGLITAYWDSSPVIAITGQVPRSVMGK--MAFQEADAMGVFENVT 127 (572)
T ss_pred HHHHHHHHHhh---CCCEEEEeCCCCCHHH---HHHHHHHHHhhCCCEEEEecCCCccccCC--CCccccchhhhhhccc
Confidence 44566666542 3334555567998887 44567778888999999986443222111 1111225566777776
Q ss_pred ceEEEEeCCCHHHHHHHHHHHHHHhhccC-CcEEEEEEe
Q 016903 229 VRSIRVDGNDALAIYSAVHAAREMAIGEG-RPILIEALT 266 (380)
Q Consensus 229 ~~~~~VdG~D~~av~~a~~~a~~~ar~~~-gP~lIe~~t 266 (380)
-...+|+ +++++...+.+|+..++.+. ||+.|++-.
T Consensus 128 k~~~~v~--~~~~~~~~l~~A~~~A~~~~~GPV~l~iP~ 164 (572)
T PRK06456 128 KYVIGIK--RIDEIPQWIKNAFYIATTGRPGPVVIDIPR 164 (572)
T ss_pred eeEEEeC--CHHHHHHHHHHHHHHHhcCCCCcEEEecCh
Confidence 6677776 88999999999998888765 999998864
No 171
>PRK08273 thiamine pyrophosphate protein; Provisional
Probab=93.97 E-value=0.43 Score=50.92 Aligned_cols=109 Identities=14% Similarity=-0.016 Sum_probs=72.2
Q ss_pred hHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCcCHHHHHhhcC
Q 016903 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 228 (380)
Q Consensus 149 lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~~~~~~~~~~~~~~~~~~a~a~G 228 (380)
.-+|-|.|.+. +.-.++++..|=|+++ ..-++..|..-++|||+|+-.-..... ........|..+.++.+-
T Consensus 55 ~~~Adgyar~t---g~~gv~~~t~GPG~~n---~~~gi~~A~~d~vPvl~I~G~~~~~~~--~~~~~q~~d~~~l~~~vt 126 (597)
T PRK08273 55 AFMAVAHAKFT---GEVGVCLATSGPGAIH---LLNGLYDAKLDHVPVVAIVGQQARAAL--GGHYQQEVDLQSLFKDVA 126 (597)
T ss_pred HHHHHHHHHHh---CCCEEEEECCCccHHH---HHHHHHHHHhcCCCEEEEecCCchhhc--CCCCCCccCHHHHHHHHH
Confidence 34566666543 3345666667888886 345677788889999999853221111 011111234556666665
Q ss_pred -ceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEee
Q 016903 229 -VRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTY 267 (380)
Q Consensus 229 -~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t~ 267 (380)
-...+|+ +++.+...+.+|+..|..+.||+.|++-..
T Consensus 127 ~k~~~~v~--~~~~~~~~l~~A~~~A~~~~gPV~i~iP~D 164 (597)
T PRK08273 127 GAFVQMVT--VPEQLRHLVDRAVRTALAERTVTAVILPND 164 (597)
T ss_pred HHHeeEeC--CHHHHHHHHHHHHHHHhhCCCCEEEEeCcc
Confidence 4566777 888999999999988888889999988654
No 172
>PRK07418 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=93.97 E-value=0.49 Score=50.68 Aligned_cols=108 Identities=19% Similarity=0.153 Sum_probs=72.8
Q ss_pred hHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCcCHHHHHhhcC
Q 016903 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 228 (380)
Q Consensus 149 lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~~~~~~~~~~~~~~~~~~a~a~G 228 (380)
.-+|.|.|.. .+.-.++++..|=|.++ ..-+|..|..-+.|||+|+-+-..... ....+...|....++.+-
T Consensus 73 a~aA~gyar~---tgk~gv~~~t~GPG~~n---~l~gl~~A~~d~~Pvl~i~G~~~~~~~--~~~~~Qe~d~~~~~~~vt 144 (616)
T PRK07418 73 AHAADGYARA---TGKVGVCFGTSGPGATN---LVTGIATAQMDSVPMVVITGQVPRPAI--GTDAFQETDIFGITLPIV 144 (616)
T ss_pred HHHHHHHHHH---hCCCeEEEECCCccHHH---HHHHHHHHHhcCCCEEEEecCCCcccc--CCCCcccccHHHHhhhcc
Confidence 4456666544 34445666667998886 445677888899999999864332110 011111235566677666
Q ss_pred ceEEEEeCCCHHHHHHHHHHHHHHhhccC-CcEEEEEEe
Q 016903 229 VRSIRVDGNDALAIYSAVHAAREMAIGEG-RPILIEALT 266 (380)
Q Consensus 229 ~~~~~VdG~D~~av~~a~~~a~~~ar~~~-gP~lIe~~t 266 (380)
-...+|+ +++++..++.+|+..|..++ ||+.|++-.
T Consensus 145 k~~~~v~--~~~~i~~~l~~A~~~A~~~~~GPv~l~iP~ 181 (616)
T PRK07418 145 KHSYVVR--DPSDMARIVAEAFHIASSGRPGPVLIDIPK 181 (616)
T ss_pred eeEEEeC--CHHHHHHHHHHHHHHHhcCCCCcEEEecch
Confidence 5566777 89999999999999888876 999998764
No 173
>PRK06276 acetolactate synthase catalytic subunit; Reviewed
Probab=93.92 E-value=0.51 Score=50.22 Aligned_cols=108 Identities=20% Similarity=0.151 Sum_probs=73.7
Q ss_pred hHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCcCHHHHHhhcC
Q 016903 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 228 (380)
Q Consensus 149 lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~~~~~~~~~~~~~~~~~~a~a~G 228 (380)
..+|.|.|++. +.-.++++..|=|.++ ..-++..|..-++|||+|+-.-...... .......|....++.+-
T Consensus 51 ~~~Adgyar~t---g~~gv~~~t~GPG~~n---~l~~i~~A~~~~~Pvl~I~G~~~~~~~~--~~~~q~~d~~~l~~~~t 122 (586)
T PRK06276 51 AHAADGYARAS---GKVGVCVATSGPGATN---LVTGIATAYADSSPVIALTGQVPTKLIG--NDAFQEIDALGIFMPIT 122 (586)
T ss_pred HHHHHHHHHHh---CCCEEEEECCCccHHH---HHHHHHHHHhcCCCEEEEeCCCCccccC--CCCCccccHhhHHhhhc
Confidence 45666766543 3445666677888886 3466777888899999998533221111 11111235666777777
Q ss_pred ceEEEEeCCCHHHHHHHHHHHHHHhhccC-CcEEEEEEe
Q 016903 229 VRSIRVDGNDALAIYSAVHAAREMAIGEG-RPILIEALT 266 (380)
Q Consensus 229 ~~~~~VdG~D~~av~~a~~~a~~~ar~~~-gP~lIe~~t 266 (380)
-...+|+ +++++...+.+|+..|..++ ||+.|++-.
T Consensus 123 k~s~~v~--~~~~i~~~i~~A~~~A~~~~~GPV~l~iP~ 159 (586)
T PRK06276 123 KHNFQIK--KPEEIPEIFRAAFEIAKTGRPGPVHIDLPK 159 (586)
T ss_pred ceEEecC--CHHHHHHHHHHHHHHhcCCCCCcEEEEcCh
Confidence 6777787 88999999999998888774 899998864
No 174
>PRK06466 acetolactate synthase 3 catalytic subunit; Validated
Probab=93.91 E-value=0.43 Score=50.59 Aligned_cols=108 Identities=19% Similarity=0.170 Sum_probs=74.8
Q ss_pred HHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCcCHHHHHhhcCc
Q 016903 150 PHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGV 229 (380)
Q Consensus 150 p~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~~~~~~~~~~~~~~~~~~a~a~G~ 229 (380)
-+|-|.|.+. +.-.++++..|=|.++ ..-++..|..-++|||+|.-......... ......|....++.+--
T Consensus 56 ~mAdgyar~t---g~~gv~~vt~GPG~~N---~l~gl~~A~~~~~Pvl~i~G~~~~~~~~~--~~~q~~d~~~l~~~itk 127 (574)
T PRK06466 56 HMADGYARAT---GKTGVVLVTSGPGATN---AITGIATAYMDSIPMVVLSGQVPSTLIGE--DAFQETDMVGISRPIVK 127 (574)
T ss_pred HHHHHHHHHh---CCCEEEEECCCccHHH---HHHHHHHHHhcCCCEEEEecCCCccccCC--Ccccccchhhhhhccce
Confidence 3566666543 4445677777898886 44667788888999999986544322111 11112355667777766
Q ss_pred eEEEEeCCCHHHHHHHHHHHHHHhhccC-CcEEEEEEee
Q 016903 230 RSIRVDGNDALAIYSAVHAAREMAIGEG-RPILIEALTY 267 (380)
Q Consensus 230 ~~~~VdG~D~~av~~a~~~a~~~ar~~~-gP~lIe~~t~ 267 (380)
...+|+ ++..+...+++|+..|+.+. ||+.|++-..
T Consensus 128 ~s~~v~--~~~~~~~~~~rA~~~A~~~~~GPV~l~iP~D 164 (574)
T PRK06466 128 HSFMVK--HASEIPEIIKKAFYIAQSGRPGPVVVDIPKD 164 (574)
T ss_pred eEEEcC--CHHHHHHHHHHHHHHHhcCCCCcEEEEcCHh
Confidence 677777 89999999999998888774 9999988654
No 175
>PRK06725 acetolactate synthase 3 catalytic subunit; Validated
Probab=93.90 E-value=0.43 Score=50.69 Aligned_cols=108 Identities=20% Similarity=0.187 Sum_probs=74.7
Q ss_pred hHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCcCHHHHHhhcC
Q 016903 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 228 (380)
Q Consensus 149 lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~~~~~~~~~~~~~~~~~~a~a~G 228 (380)
.-+|-|.|... +.-.++++..|=|.++ ..-++..|..-+.|||+|+-........ .......|....++.+-
T Consensus 65 ~~mAdgyar~t---g~~gv~~~t~GpG~~N---~~~gla~A~~~~~Pvl~I~G~~~~~~~~--~~~~q~~d~~~l~~~it 136 (570)
T PRK06725 65 IHAAEGYARAS---GKVGVVFATSGPGATN---LVTGLADAYMDSIPLVVITGQVATPLIG--KDGFQEADVVGITVPVT 136 (570)
T ss_pred HHHHHHHHHHh---CCCeEEEECCCccHHH---HHHHHHHHhhcCcCEEEEecCCCccccc--CCCCcccchhhhhhccc
Confidence 34566666543 4445667777888886 3456777888899999998643322111 11122236667788777
Q ss_pred ceEEEEeCCCHHHHHHHHHHHHHHhhccC-CcEEEEEEe
Q 016903 229 VRSIRVDGNDALAIYSAVHAAREMAIGEG-RPILIEALT 266 (380)
Q Consensus 229 ~~~~~VdG~D~~av~~a~~~a~~~ar~~~-gP~lIe~~t 266 (380)
-...+|. +++.+...+++|+..++.+. ||+.|++-.
T Consensus 137 k~~~~v~--~~~~i~~~l~~A~~~A~s~~~GPV~l~iP~ 173 (570)
T PRK06725 137 KHNYQVR--DVNQLSRIVQEAFYIAESGRPGPVLIDIPK 173 (570)
T ss_pred eeEEEcC--CHHHHHHHHHHHHHHHhcCCCCcEEEcccc
Confidence 6777787 89999999999999888875 899998864
No 176
>PRK07586 hypothetical protein; Validated
Probab=93.85 E-value=0.45 Score=49.70 Aligned_cols=109 Identities=18% Similarity=0.086 Sum_probs=73.0
Q ss_pred hHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCcCHHHHHhhcC
Q 016903 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 228 (380)
Q Consensus 149 lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~~~~~~~~~~~~~~~~~~a~a~G 228 (380)
.-+|-|.|... +.-.++++..|=|.++ ..-++..|..-+.|||+|+-.-...... .......|....++.+-
T Consensus 52 ~~mAdgyar~t---g~~gv~~~t~GPG~~N---~~~gl~~A~~~~~Pvl~i~G~~~~~~~~--~~~~q~~d~~~~~~~vt 123 (514)
T PRK07586 52 TGAADGYARMA---GKPAATLLHLGPGLAN---GLANLHNARRARTPIVNIVGDHATYHRK--YDAPLTSDIEALARPVS 123 (514)
T ss_pred HHHHHHHHHHH---CCCEEEEecccHHHHH---HHHHHHHHHhcCCCEEEEecCCchhccC--CCcccccchhhhhcccc
Confidence 44566666542 3445566677888775 3345666888899999998653322111 11111235666777776
Q ss_pred ceEEEEeCCCHHHHHHHHHHHHHHhhcc-CCcEEEEEEee
Q 016903 229 VRSIRVDGNDALAIYSAVHAAREMAIGE-GRPILIEALTY 267 (380)
Q Consensus 229 ~~~~~VdG~D~~av~~a~~~a~~~ar~~-~gP~lIe~~t~ 267 (380)
-...+|. +++++...+++|+..++.+ .||+.|++-..
T Consensus 124 k~~~~v~--~~~~~~~~i~~A~~~a~~~~~GPV~l~iP~D 161 (514)
T PRK07586 124 GWVRRSE--SAADVAADAAAAVAAARGAPGQVATLILPAD 161 (514)
T ss_pred ceeeecC--CHHHHHHHHHHHHHHHhcCCCCcEEEEeccc
Confidence 5666777 8899999999999888887 69999988653
No 177
>TIGR01504 glyox_carbo_lig glyoxylate carboligase. Glyoxylate carboligase, also called tartronate-semialdehyde synthase, releases CO2 while synthesizing a single molecule of tartronate semialdehyde from two molecules of glyoxylate. It is a thiamine pyrophosphate-dependent enzyme, closely related in sequence to the large subunit of acetolactate synthase. In the D-glycerate pathway, part of allantoin degradation in the Enterobacteriaceae, tartronate semialdehyde is converted to D-glycerate and then 3-phosphoglycerate, a product of glycolysis and entry point in the general metabolism.
Probab=93.82 E-value=0.47 Score=50.59 Aligned_cols=110 Identities=15% Similarity=0.157 Sum_probs=73.4
Q ss_pred hHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCcCHHHHHhhcC
Q 016903 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 228 (380)
Q Consensus 149 lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~~~~~~~~~~~~~~~~~~a~a~G 228 (380)
.-+|-|.|.+.. +.-.++++..|=|.++ ..-++..|...++|||+|+-.-....... ..+...|....++.+-
T Consensus 54 ~~mAdgyaR~t~--g~~gv~~~t~GpG~~N---~~~gla~A~~~~~Pvl~I~G~~~~~~~~~--~~~q~~D~~~~~~~vt 126 (588)
T TIGR01504 54 SHMAEGYTRATA--GNIGVCIGTSGPAGTD---MITGLYSASADSIPILCITGQAPRARLHK--EDFQAVDIAAIAKPVS 126 (588)
T ss_pred HHHHHHHHHhcC--CCeEEEEECCCccHHH---HHHHHHHHhhcCCCEEEEecCCCccccCC--CcccccCHHHHhhhhc
Confidence 345556654320 2333455556888886 34567778888999999996544332111 1122235667788777
Q ss_pred ceEEEEeCCCHHHHHHHHHHHHHHhhccC-CcEEEEEEee
Q 016903 229 VRSIRVDGNDALAIYSAVHAAREMAIGEG-RPILIEALTY 267 (380)
Q Consensus 229 ~~~~~VdG~D~~av~~a~~~a~~~ar~~~-gP~lIe~~t~ 267 (380)
-...+|. +++++...+++|+..++.+. ||+.|++-..
T Consensus 127 k~~~~v~--~~~~i~~~i~~A~~~A~~~~~GPV~l~iP~D 164 (588)
T TIGR01504 127 KMAVTVR--EAALVPRVLQQAFHLMRSGRPGPVLIDLPFD 164 (588)
T ss_pred eEEEEcC--CHHHHHHHHHHHHHHHccCCCCeEEEEeCcc
Confidence 7777777 89999999999998888765 8999988653
No 178
>PRK08366 vorA 2-ketoisovalerate ferredoxin oxidoreductase subunit alpha; Reviewed
Probab=93.81 E-value=0.56 Score=47.46 Aligned_cols=114 Identities=21% Similarity=0.261 Sum_probs=76.3
Q ss_pred chHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCcCHHHHHhhc
Q 016903 148 QLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAY 227 (380)
Q Consensus 148 ~lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~~~~~~~~~~~~~~~~~~a~a~ 227 (380)
.+.+|+|+++| +.++++.+-=++++ ..+|.|.+|+-..+|+|+++.|-... ++..-.....|+. .++--
T Consensus 61 A~~~aiGAs~a------GaRa~TaTSg~Gl~--lm~E~l~~aa~~~lPiVi~~~~R~~p--~~~~~~~~q~D~~-~~~d~ 129 (390)
T PRK08366 61 AMAACIGASAA------GARAFTATSAQGLA--LMHEMLHWAAGARLPIVMVDVNRAMA--PPWSVWDDQTDSL-AQRDT 129 (390)
T ss_pred HHHHHHHHHhh------CCCeEeeeCcccHH--HHhhHHHHHHhcCCCEEEEEeccCCC--CCCCCcchhhHHH-HHhhc
Confidence 37788888887 34566655545554 47899999999999988887755432 2221111112222 12333
Q ss_pred CceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCCCCCCC
Q 016903 228 GVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTS 275 (380)
Q Consensus 228 G~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t~R~~gHs~~ 275 (380)
||-++ -..|+.+.++....|++.+.+..-|+++-...|+.. |...
T Consensus 130 g~i~~--~~~~~QEa~d~t~~Af~lAE~~~~PViv~~Dg~~~s-h~~~ 174 (390)
T PRK08366 130 GWMQF--YAENNQEVYDGVLMAFKVAETVNLPAMVVESAFILS-HTYD 174 (390)
T ss_pred CEEEE--eCCCHHHHHHHHHHHHHHHHHHCCCEEEEecCcccc-cccc
Confidence 66443 346999999999999998888899999999888765 5443
No 179
>PLN02470 acetolactate synthase
Probab=93.81 E-value=0.47 Score=50.51 Aligned_cols=108 Identities=20% Similarity=0.187 Sum_probs=74.2
Q ss_pred hHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCcCHHHHHhhcC
Q 016903 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 228 (380)
Q Consensus 149 lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~~~~~~~~~~~~~~~~~~a~a~G 228 (380)
.-+|.|.|.+. +.-.++++..|=|.++ ..-++..|..-+.|||+|.-.-...... .......|....++.+-
T Consensus 64 ~~~Adgyar~t---g~~gv~~~t~GPG~~N---~l~gia~A~~~~~Pvl~I~G~~~~~~~~--~~~~q~~d~~~l~~~~t 135 (585)
T PLN02470 64 VFAAEGYAKAS---GKVGVCIATSGPGATN---LVTGLADALLDSVPLVAITGQVPRRMIG--TDAFQETPIVEVTRSIT 135 (585)
T ss_pred HHHHHHHHHHh---CCCEEEEECCCccHHH---HHHHHHHHHhcCCcEEEEecCCChhhcC--CCcCcccchhhhhhhhe
Confidence 44566776543 3445677777998886 4456777888899999998644322111 11112234556677776
Q ss_pred ceEEEEeCCCHHHHHHHHHHHHHHhhccC-CcEEEEEEe
Q 016903 229 VRSIRVDGNDALAIYSAVHAAREMAIGEG-RPILIEALT 266 (380)
Q Consensus 229 ~~~~~VdG~D~~av~~a~~~a~~~ar~~~-gP~lIe~~t 266 (380)
-...+|+ ++.++..++++|+..++.++ ||+.|++-.
T Consensus 136 k~~~~v~--~~~~i~~~l~~A~~~A~s~~~GPV~l~iP~ 172 (585)
T PLN02470 136 KHNYLVM--DVEDIPRVIREAFFLASSGRPGPVLVDIPK 172 (585)
T ss_pred EEEEEcC--CHHHHHHHHHHHHHHhcCCCCCeEEEEecC
Confidence 6677776 89999999999999888875 999999864
No 180
>PF01855 POR_N: Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg; InterPro: IPR002880 This family includes the N-terminal region of the pyruvate ferredoxin oxidoreductase, corresponding to the first two structural domains. This region is involved in inter subunit contacts []. Pyruvate oxidoreductase (POR) catalyses the final step in the fermentation of carbohydrates in anaerobic microorganisms []. This involves the oxidative decarboxylation of pyruvate with the participation of thiamine followed by the transfer of an acetyl moiety to coenzyme A for the synthesis of acetyl-CoA []. The family also includes pyruvate flavodoxin oxidoreductase as encoded by the nifJ gene in cyanobacterium which is required for growth on molecular nitrogen when iron is limited [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2PDA_B 2C3Y_A 2C3P_B 2UZA_A 2C3U_B 2C42_A 1B0P_B 2C3M_A 2C3O_B 1KEK_B ....
Probab=93.77 E-value=0.2 Score=46.96 Aligned_cols=112 Identities=19% Similarity=0.212 Sum_probs=67.1
Q ss_pred hHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcccc-cccccccCCcCHHHHHhhc
Q 016903 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAIS-TPISDQFRSDGAVVKGRAY 227 (380)
Q Consensus 149 lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~~~-~~~~~~~~~~~~~~~a~a~ 227 (380)
+.+++|++++ +.++++.+-=.+++ ...|.|.+++-.++|+|+++.|-.-... .++.. ...|+ -.++.+
T Consensus 49 ~~~~~GAs~a------G~ra~t~ts~~Gl~--lm~e~l~~a~~~~~P~V~~~~~R~g~~~g~~~~~--~q~D~-~~~~d~ 117 (230)
T PF01855_consen 49 MEAAIGASAA------GARAMTATSGPGLN--LMAEPLYWAAGTELPIVIVVVQRAGPSPGLSTQP--EQDDL-MAARDS 117 (230)
T ss_dssp HHHHHHHHHT------T--EEEEEECCHHH--HHCCCHHHHHHTT--EEEEEEEB---SSSB--SB---SHHH-HHTTTS
T ss_pred HHHHHHHHhc------CCceEEeecCCccc--ccHhHHHHHHHcCCCEEEEEEECCCCCCCCcCcC--ChhHH-HHHHhc
Confidence 6677787776 23444444333332 3567789999999998888877543222 11111 11122 123467
Q ss_pred CceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCCCCCC
Q 016903 228 GVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTT 274 (380)
Q Consensus 228 G~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t~R~~gHs~ 274 (380)
||.++... |+.+.++....|.+.+.+..-|+++-...++. .|+.
T Consensus 118 ~~~vl~p~--~~QEa~d~~~~A~~lAe~~~~PViv~~Dg~~~-sh~~ 161 (230)
T PF01855_consen 118 GWIVLAPS--SPQEAYDMTLIAFNLAEKYQTPVIVLFDGFLC-SHSR 161 (230)
T ss_dssp S-EEEE----SHHHHHHHHHHHHHHHHHHTSEEEEEEECCCC-TC-E
T ss_pred CeEEEeCC--CHHHHHHHHHHHHHHHHHHCCCEEEEechhhh-cCcc
Confidence 88877665 99999999999999999999999999888765 3554
No 181
>cd07033 TPP_PYR_DXS_TK_like Pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and related proteins. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and the beta subunits of the E1 component of the human pyruvate dehydrogenase complex (E1- PDHc), subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included
Probab=93.68 E-value=0.74 Score=40.26 Aligned_cols=99 Identities=22% Similarity=0.207 Sum_probs=60.4
Q ss_pred hHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHH-HHHHcCCCEEEEEEcCCccc--ccccccccCCcCHHHHHh
Q 016903 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALN-FSAVTEAPVIFICRNNGWAI--STPISDQFRSDGAVVKGR 225 (380)
Q Consensus 149 lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~-~A~~~~Lpvi~vv~NN~~~~--~~~~~~~~~~~~~~~~a~ 225 (380)
+++|.|+|+. + .++++++. ..|.. ..++.+. .++.+++|+++++...+++. .++++.. ..++ ...+
T Consensus 52 vg~A~GlA~~----G-~~pi~~~~--~~f~~-ra~dqi~~~~a~~~~pv~~~~~~~g~~~~~~G~tH~~--~~~~-a~~~ 120 (156)
T cd07033 52 VGIAAGLALH----G-LKPFVSTF--SFFLQ-RAYDQIRHDVALQNLPVKFVGTHAGISVGEDGPTHQG--IEDI-ALLR 120 (156)
T ss_pred HHHHHHHHHC----C-CeEEEEEC--HHHHH-HHHHHHHHHHhccCCCeEEEEECCcEecCCCCcccch--HHHH-HHhc
Confidence 5566666643 3 34455544 44432 3445555 88999999999998776654 3333322 1222 2233
Q ss_pred hc-CceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEE
Q 016903 226 AY-GVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEA 264 (380)
Q Consensus 226 a~-G~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~ 264 (380)
.+ |+.++. -.|+.++...++.|++. ++|++|-.
T Consensus 121 ~iPg~~v~~--Ps~~~~~~~ll~~a~~~----~~P~~irl 154 (156)
T cd07033 121 AIPNMTVLR--PADANETAAALEAALEY----DGPVYIRL 154 (156)
T ss_pred CCCCCEEEe--cCCHHHHHHHHHHHHhC----CCCEEEEe
Confidence 33 555554 44899999999999863 67988753
No 182
>PRK08322 acetolactate synthase; Reviewed
Probab=93.65 E-value=0.56 Score=49.34 Aligned_cols=108 Identities=15% Similarity=0.117 Sum_probs=72.7
Q ss_pred hHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCcCHHHHHhhcC
Q 016903 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 228 (380)
Q Consensus 149 lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~~~~~~~~~~~~~~~~~~a~a~G 228 (380)
.-+|.|.|.+. +.-.++++..|=|.++ ..-++..|..-++|||+|+-+-...... .......|....++.+-
T Consensus 51 ~~~A~gyar~t---g~~gv~~~t~GpG~~N---~~~~i~~A~~~~~Pll~i~g~~~~~~~~--~~~~q~~d~~~~~~~~t 122 (547)
T PRK08322 51 AFMAATYGRLT---GKAGVCLSTLGPGATN---LVTGVAYAQLGGMPMVAITGQKPIKRSK--QGSFQIVDVVAMMAPLT 122 (547)
T ss_pred HHHHHHHHHhh---CCCEEEEECCCccHhH---HHHHHHHHhhcCCCEEEEeccccccccC--CCccccccHHHHhhhhe
Confidence 44566666543 3445666666888886 4456777888899999999643322111 11122235666777665
Q ss_pred ceEEEEeCCCHHHHHHHHHHHHHHhhcc-CCcEEEEEEe
Q 016903 229 VRSIRVDGNDALAIYSAVHAAREMAIGE-GRPILIEALT 266 (380)
Q Consensus 229 ~~~~~VdG~D~~av~~a~~~a~~~ar~~-~gP~lIe~~t 266 (380)
-...+|. +++++...+.+|+..+..+ .||+.|++-.
T Consensus 123 k~~~~v~--~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~ 159 (547)
T PRK08322 123 KWTRQIV--SPDNIPEVVREAFRLAEEERPGAVHLELPE 159 (547)
T ss_pred eEEEEeC--CHHHHHHHHHHHHHHHccCCCCcEEEEcCh
Confidence 5666776 8999999999999888886 4899998864
No 183
>PRK07789 acetolactate synthase 1 catalytic subunit; Validated
Probab=93.63 E-value=0.56 Score=50.20 Aligned_cols=108 Identities=20% Similarity=0.202 Sum_probs=73.2
Q ss_pred hHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCcCHHHHHhhcC
Q 016903 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 228 (380)
Q Consensus 149 lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~~~~~~~~~~~~~~~~~~a~a~G 228 (380)
.-+|.|.|.+. +.-.++++..|=|.++ ..-++..|..-++|||+|+-.-...... .......|....++.+-
T Consensus 82 ~~~Adgyar~t---g~~gv~~~t~GPG~~N---~l~gl~~A~~~~~PllvI~G~~~~~~~~--~~~~q~~d~~~l~~~~t 153 (612)
T PRK07789 82 GHAAEGYAQAT---GRVGVCMATSGPGATN---LVTPIADANMDSVPVVAITGQVGRGLIG--TDAFQEADIVGITMPIT 153 (612)
T ss_pred HHHHHHHHHHh---CCCEEEEECCCccHHH---HHHHHHHHhhcCCCEEEEecCCCccccC--CCcCcccchhhhhhcce
Confidence 44566666543 3445667777888886 3456777888899999999643322111 11122235666777766
Q ss_pred ceEEEEeCCCHHHHHHHHHHHHHHhhcc-CCcEEEEEEe
Q 016903 229 VRSIRVDGNDALAIYSAVHAAREMAIGE-GRPILIEALT 266 (380)
Q Consensus 229 ~~~~~VdG~D~~av~~a~~~a~~~ar~~-~gP~lIe~~t 266 (380)
-...+|+ ++.++...+.+|+..++.+ .||+.|++-.
T Consensus 154 k~s~~v~--~~~~i~~~l~~A~~~A~~~~~GPV~l~iP~ 190 (612)
T PRK07789 154 KHNFLVT--DADDIPRVIAEAFHIASTGRPGPVLVDIPK 190 (612)
T ss_pred eEEEEcC--CHHHHHHHHHHHHHHHhcCCCceEEEEEcc
Confidence 6666776 8999999999999888876 4899998864
No 184
>PRK08978 acetolactate synthase 2 catalytic subunit; Reviewed
Probab=93.57 E-value=0.46 Score=50.04 Aligned_cols=108 Identities=20% Similarity=0.193 Sum_probs=72.3
Q ss_pred hHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCcCHHHHHhhcC
Q 016903 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 228 (380)
Q Consensus 149 lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~~~~~~~~~~~~~~~~~~a~a~G 228 (380)
.-+|.|.|.+. +.-.++++..|=|.++ ..-++..|..-++|||+|.-.-....... ......|....++.+-
T Consensus 51 ~~~Adgyar~s---g~~gv~~~t~GpG~~n---~~~~l~~A~~~~~Pvl~i~g~~~~~~~~~--~~~q~~d~~~~~~~~t 122 (548)
T PRK08978 51 AMAAIGYARAT---GKVGVCIATSGPGATN---LITGLADALLDSVPVVAITGQVSSPLIGT--DAFQEIDVLGLSLACT 122 (548)
T ss_pred HHHHHHHHHHh---CCCEEEEECCCCcHHH---HHHHHHHHhhcCCCEEEEecCCCccccCC--CCCcccchhccccCce
Confidence 44566666553 4455667777888886 44667778888999999986433221111 1111124445666665
Q ss_pred ceEEEEeCCCHHHHHHHHHHHHHHhhccC-CcEEEEEEe
Q 016903 229 VRSIRVDGNDALAIYSAVHAAREMAIGEG-RPILIEALT 266 (380)
Q Consensus 229 ~~~~~VdG~D~~av~~a~~~a~~~ar~~~-gP~lIe~~t 266 (380)
-...+|+ +++++...+++|+..++.+. ||+.|++-.
T Consensus 123 k~~~~v~--~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~ 159 (548)
T PRK08978 123 KHSFLVQ--SLEELPEIMAEAFEIASSGRPGPVLVDIPK 159 (548)
T ss_pred eeEEEEC--CHHHHHHHHHHHHHHHhcCCCCcEEEecCh
Confidence 5667776 89999999999998888864 999998864
No 185
>TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type. Several isozymes of this enzyme are found in E. coli K12, one of which contains a frameshift in the large subunit gene and is not expressed.
Probab=93.50 E-value=0.58 Score=49.39 Aligned_cols=108 Identities=19% Similarity=0.179 Sum_probs=73.8
Q ss_pred hHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCcCHHHHHhhcC
Q 016903 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 228 (380)
Q Consensus 149 lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~~~~~~~~~~~~~~~~~~a~a~G 228 (380)
.-+|.|.|... +.-.++++..|=|.++ ..-++..|..-++|||+|+-.-...... .......|....++.+-
T Consensus 52 ~~~Adgyar~t---g~~gv~~~t~GpG~~n---~l~~i~~A~~~~~Pvl~i~g~~~~~~~~--~~~~q~~d~~~~~~~~t 123 (558)
T TIGR00118 52 AHAADGYARAS---GKVGVVLVTSGPGATN---LVTGIATAYMDSIPMVVFTGQVPTSLIG--SDAFQEADILGITMPIT 123 (558)
T ss_pred HHHHHHHHHHh---CCCEEEEECCCCcHHH---HHHHHHHHHhcCCCEEEEecCCCccccC--CCCCcccChhhhhcCcc
Confidence 34566766543 3445677777888886 4566778888999999998643221111 11111235566777777
Q ss_pred ceEEEEeCCCHHHHHHHHHHHHHHhhccC-CcEEEEEEe
Q 016903 229 VRSIRVDGNDALAIYSAVHAAREMAIGEG-RPILIEALT 266 (380)
Q Consensus 229 ~~~~~VdG~D~~av~~a~~~a~~~ar~~~-gP~lIe~~t 266 (380)
-...+|+ ++.++...+.+|+..+..+. ||+.|++-.
T Consensus 124 k~~~~v~--~~~~~~~~v~~A~~~A~~~~~GPV~i~iP~ 160 (558)
T TIGR00118 124 KHSFQVK--SAEDIPRIIKEAFHIATTGRPGPVLVDLPK 160 (558)
T ss_pred ceeEEeC--CHHHHHHHHHHHHHHHhcCCCCeEEEEcCh
Confidence 7777887 88999999999998888774 899998864
No 186
>PRK07710 acetolactate synthase catalytic subunit; Reviewed
Probab=93.45 E-value=0.55 Score=49.80 Aligned_cols=108 Identities=17% Similarity=0.187 Sum_probs=72.1
Q ss_pred hHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCcCHHHHHhhcC
Q 016903 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 228 (380)
Q Consensus 149 lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~~~~~~~~~~~~~~~~~~a~a~G 228 (380)
.-+|.|.|.+. +.-.++++..|=|.++ ..-++..|..-++|||+|.-......... ......|....++.+-
T Consensus 66 ~~~A~gyar~t---g~~gv~~~t~GPG~~N---~~~gl~~A~~~~~Pvl~ItG~~~~~~~~~--~~~q~~d~~~l~~~~t 137 (571)
T PRK07710 66 IHAAEGYARIS---GKPGVVIATSGPGATN---VVTGLADAMIDSLPLVVFTGQVATSVIGS--DAFQEADIMGITMPVT 137 (571)
T ss_pred HHHHHHHHHHh---CCCeEEEECCCccHHH---HHHHHHHHhhcCCCEEEEeccCCccccCC--CCccccchhhhhhccc
Confidence 45666766553 3345666667888886 44567778888999999986544321111 1111224556666665
Q ss_pred ceEEEEeCCCHHHHHHHHHHHHHHhhccC-CcEEEEEEe
Q 016903 229 VRSIRVDGNDALAIYSAVHAAREMAIGEG-RPILIEALT 266 (380)
Q Consensus 229 ~~~~~VdG~D~~av~~a~~~a~~~ar~~~-gP~lIe~~t 266 (380)
-...+|. +++.+...+++|+..++.+. ||+.|++-.
T Consensus 138 k~~~~v~--~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~ 174 (571)
T PRK07710 138 KHNYQVR--KASDLPRIIKEAFHIATTGRPGPVLIDIPK 174 (571)
T ss_pred ceEEecC--CHHHHHHHHHHHHHHHhcCCCCcEEEEcCh
Confidence 5566666 88899999999998888774 999998875
No 187
>PRK12474 hypothetical protein; Provisional
Probab=93.43 E-value=0.66 Score=48.60 Aligned_cols=109 Identities=17% Similarity=0.014 Sum_probs=71.8
Q ss_pred hHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCcCHHHHHhhcC
Q 016903 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 228 (380)
Q Consensus 149 lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~~~~~~~~~~~~~~~~~~a~a~G 228 (380)
.-+|-|.|.+ .+.-.++++..|=|.++ ..-++..|..-+.|||+|+-......... ......|....++.+-
T Consensus 56 ~~mAdgYaR~---tg~~gv~~~t~GpG~~N---~~~gl~~A~~d~~Pvl~i~G~~~~~~~~~--~~~q~~d~~~~~~~vt 127 (518)
T PRK12474 56 TGAADGYGRI---AGKPAVTLLHLGPGLAN---GLANLHNARRAASPIVNIVGDHAVEHLQY--DAPLTSDIDGFARPVS 127 (518)
T ss_pred HHHHHHHHHH---hCCCEEEEEccchhHhH---hHHHHHHHhhcCCCEEEEeccCchhhcCC--CCccccCHHHhhhccc
Confidence 3456666654 34445667777999886 33456668888899999996433221111 1111135666777665
Q ss_pred ceEEEEeCCCHHHHHHHHHHHHHHhhccC-CcEEEEEEee
Q 016903 229 VRSIRVDGNDALAIYSAVHAAREMAIGEG-RPILIEALTY 267 (380)
Q Consensus 229 ~~~~~VdG~D~~av~~a~~~a~~~ar~~~-gP~lIe~~t~ 267 (380)
-...+|+ +++++..++++|+..+.++. ||++|++-..
T Consensus 128 k~~~~v~--~~~~~~~~i~rA~~~A~~~~~GPV~l~iP~D 165 (518)
T PRK12474 128 RWVHRSA--SAGAVDSDVARAVQAAQSAPGGIATLIMPAD 165 (518)
T ss_pred ceeeecC--CHHHHHHHHHHHHHHHhcCCCCcEEEEechh
Confidence 5556666 89999999999998877775 8999988643
No 188
>PRK09107 acetolactate synthase 3 catalytic subunit; Validated
Probab=93.27 E-value=0.61 Score=49.77 Aligned_cols=108 Identities=19% Similarity=0.178 Sum_probs=73.3
Q ss_pred hHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCcCHHHHHhhcC
Q 016903 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 228 (380)
Q Consensus 149 lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~~~~~~~~~~~~~~~~~~a~a~G 228 (380)
.-+|-|.|+.. +.-.++++..|=|.++ ..-++..|...+.|||+|.-......... ......|....++.+-
T Consensus 62 ~~mAdgyar~t---g~~gv~~~t~GPG~~N---~l~gia~A~~~~~Pvl~i~G~~~~~~~~~--~~~q~~d~~~l~~~vt 133 (595)
T PRK09107 62 GHAAEGYARST---GKPGVVLVTSGPGATN---AVTPLQDALMDSIPLVCITGQVPTHLIGS--DAFQECDTVGITRPCT 133 (595)
T ss_pred HHHHHHHHHHh---CCCEEEEECCCccHhH---HHHHHHHHhhcCCCEEEEEcCCChhhcCC--CCCcccchhhhhhhhe
Confidence 44566666542 3445667777888886 34567778888999999986544322111 1111234556666665
Q ss_pred ceEEEEeCCCHHHHHHHHHHHHHHhhccC-CcEEEEEEe
Q 016903 229 VRSIRVDGNDALAIYSAVHAAREMAIGEG-RPILIEALT 266 (380)
Q Consensus 229 ~~~~~VdG~D~~av~~a~~~a~~~ar~~~-gP~lIe~~t 266 (380)
--..+|+ +++++...+.+|+..++.+. ||+.|++-.
T Consensus 134 k~~~~v~--~~~~i~~~l~~A~~~A~s~~~GPV~l~iP~ 170 (595)
T PRK09107 134 KHNWLVK--DVNDLARVIHEAFHVATSGRPGPVVVDIPK 170 (595)
T ss_pred EEEEEeC--CHHHHHHHHHHHHHHhcCCCCceEEEecCC
Confidence 5666776 89999999999999988874 899998754
No 189
>PRK08979 acetolactate synthase 3 catalytic subunit; Validated
Probab=93.24 E-value=0.66 Score=49.21 Aligned_cols=108 Identities=19% Similarity=0.171 Sum_probs=73.1
Q ss_pred hHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCcCHHHHHhhcC
Q 016903 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 228 (380)
Q Consensus 149 lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~~~~~~~~~~~~~~~~~~a~a~G 228 (380)
.-+|-|.|.+. +.-.++++..|=|.++ ..-++..|..-++|||+|.-.-...... .......|....++.+-
T Consensus 55 ~~mAdgyar~t---g~~gv~~~t~GpG~~n---~l~gia~A~~~~~Pvl~i~G~~~~~~~~--~~~~q~~d~~~~~~~it 126 (572)
T PRK08979 55 VHMADGYARAT---GKVGVVLVTSGPGATN---TITGIATAYMDSIPMVVLSGQVPSNLIG--NDAFQECDMIGISRPVV 126 (572)
T ss_pred HHHHHHHHHHh---CCCeEEEECCCchHhH---HHHHHHHHhhcCCCEEEEecCCCccccC--CCCCcccchhHHhhhce
Confidence 44566766543 3445566666888886 3355777888899999998543322111 11122235666777776
Q ss_pred ceEEEEeCCCHHHHHHHHHHHHHHhhccC-CcEEEEEEe
Q 016903 229 VRSIRVDGNDALAIYSAVHAAREMAIGEG-RPILIEALT 266 (380)
Q Consensus 229 ~~~~~VdG~D~~av~~a~~~a~~~ar~~~-gP~lIe~~t 266 (380)
-...+|+ +++++...+++|+..|+.+. ||+.|++-.
T Consensus 127 k~~~~v~--~~~~~~~~l~~A~~~A~~~~~GPV~l~iP~ 163 (572)
T PRK08979 127 KHSFLVK--DAEDIPEIIKKAFYIASTGRPGPVVIDLPK 163 (572)
T ss_pred eEEEecC--CHHHHHHHHHHHHHHHhCCCCCcEEEecCH
Confidence 6677777 89999999999999888865 899998764
No 190
>PRK06882 acetolactate synthase 3 catalytic subunit; Validated
Probab=93.24 E-value=0.69 Score=49.03 Aligned_cols=108 Identities=19% Similarity=0.188 Sum_probs=72.3
Q ss_pred HHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCcCHHHHHhhcCc
Q 016903 150 PHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGV 229 (380)
Q Consensus 150 p~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~~~~~~~~~~~~~~~~~~a~a~G~ 229 (380)
-+|-|.|.+. +.-.++++..|=|.++ ..-++..|...++|||+|.-.-...... .......|....++.+--
T Consensus 56 ~mAdgyar~t---g~~gv~~~t~GpG~~N---~l~~i~~A~~~~~Pvlvi~G~~~~~~~~--~~~~q~~d~~~l~~~vtk 127 (574)
T PRK06882 56 HMADGYARST---GKVGCVLVTSGPGATN---AITGIATAYTDSVPLVILSGQVPSNLIG--TDAFQECDMLGISRPVVK 127 (574)
T ss_pred HHHHHHHHhh---CCCeEEEECCCccHHH---HHHHHHHHhhcCCCEEEEecCCCccccC--CCcccccchhhhhhcccc
Confidence 4566666543 3445666667888886 3456777888899999998644322111 111112355667777666
Q ss_pred eEEEEeCCCHHHHHHHHHHHHHHhhcc-CCcEEEEEEee
Q 016903 230 RSIRVDGNDALAIYSAVHAAREMAIGE-GRPILIEALTY 267 (380)
Q Consensus 230 ~~~~VdG~D~~av~~a~~~a~~~ar~~-~gP~lIe~~t~ 267 (380)
...+|. ++.++...+.+|+..++.+ .||+.|++-..
T Consensus 128 ~s~~v~--~~~~~~~~l~~A~~~A~~~~~GPV~l~iP~D 164 (574)
T PRK06882 128 HSFIVK--NAEDIPSTIKKAFYIASTGRPGPVVIDIPKD 164 (574)
T ss_pred eEEEeC--CHHHHHHHHHHHHHHHhcCCCCCEEEecCHH
Confidence 677776 8899999999999887775 49999988653
No 191
>PRK08199 thiamine pyrophosphate protein; Validated
Probab=93.24 E-value=0.65 Score=49.04 Aligned_cols=108 Identities=14% Similarity=0.092 Sum_probs=70.6
Q ss_pred hHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCcCHHHHHhhcC
Q 016903 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 228 (380)
Q Consensus 149 lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~~~~~~~~~~~~~~~~~~a~a~G 228 (380)
.-+|.|.|.+ .+.-.+++|..|=|.++ ..-++..|-.-++|||+|.-.-...... .......|....++.+=
T Consensus 59 ~~~Adgyar~---tg~~gv~~~t~GpG~~N---~~~gi~~A~~~~~Pvl~i~g~~~~~~~~--~~~~q~~d~~~l~~~~t 130 (557)
T PRK08199 59 AMMAEAYGKL---TGRPGICFVTRGPGATN---ASIGVHTAFQDSTPMILFVGQVARDFRE--REAFQEIDYRRMFGPMA 130 (557)
T ss_pred HHHHHHHHHh---cCCCEEEEeCCCccHHH---HHHHHHHHhhcCCCEEEEecCCccccCC--CCcccccCHHHhhhhhh
Confidence 3456666654 23445666667888886 4456777888899999998543321111 11111124555666554
Q ss_pred ceEEEEeCCCHHHHHHHHHHHHHHhhcc-CCcEEEEEEe
Q 016903 229 VRSIRVDGNDALAIYSAVHAAREMAIGE-GRPILIEALT 266 (380)
Q Consensus 229 ~~~~~VdG~D~~av~~a~~~a~~~ar~~-~gP~lIe~~t 266 (380)
-...+|. +++++...+.+|+..+..+ .||+.|++-.
T Consensus 131 k~~~~v~--~~~~~~~~~~~A~~~A~~~~~GPV~l~iP~ 167 (557)
T PRK08199 131 KWVAEID--DAARIPELVSRAFHVATSGRPGPVVLALPE 167 (557)
T ss_pred ceeeecC--CHHHHHHHHHHHHHHHhcCCCCcEEEEcCH
Confidence 4556665 8999999999999888887 4899998763
No 192
>TIGR03394 indol_phenyl_DC indolepyruvate/phenylpyruvate decarboxylase, Azospirillum family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. This model represents a clade that includes a Azospirillum brasilense member active as both phenylpyruvate decarboxylase and indolepyruvate decarboxylase.
Probab=93.16 E-value=0.61 Score=49.14 Aligned_cols=110 Identities=18% Similarity=0.105 Sum_probs=69.7
Q ss_pred HHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCccccccc---ccccC-CcCHHHHHh
Q 016903 150 PHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPI---SDQFR-SDGAVVKGR 225 (380)
Q Consensus 150 p~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~~~~~~---~~~~~-~~~~~~~a~ 225 (380)
-+|.|.|.+. +.-.++++..|=|.++ ..-++..|..-++|||+|.-+......... +.+.. .++....++
T Consensus 52 ~~Adgyar~t---g~~gv~~~t~GpG~~n---~~~gia~A~~~~~Pvl~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (535)
T TIGR03394 52 FAADAAARYR---GTLGVAAVTYGAGAFN---MVNAIAGAYAEKSPVVVISGAPGTTEGNAGLLLHHQGRTLDSQFQVFK 125 (535)
T ss_pred HHHhHHHHhh---CCceEEEEecchHHHh---hhhHHHHHhhcCCCEEEEECCCCcccccCCceeEeeccchHHHHHhhh
Confidence 3466666543 4455677777999887 345677788889999999865432211110 01111 112345566
Q ss_pred hcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEee
Q 016903 226 AYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTY 267 (380)
Q Consensus 226 a~G~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t~ 267 (380)
..--...+|. ++..+.+.+++|+..+....||+.|++-..
T Consensus 126 ~vtk~~~~v~--~~~~~~~~~~~A~~~a~~~~gPv~i~iP~D 165 (535)
T TIGR03394 126 EVTCDQAVLD--DPATAPAEIARVLGSARELSRPVYLEIPRD 165 (535)
T ss_pred hheEEEEEeC--ChHHhHHHHHHHHHHHHHCCCCEEEEechh
Confidence 5544455665 777888888888877777889999998653
No 193
>PRK06965 acetolactate synthase 3 catalytic subunit; Validated
Probab=93.14 E-value=0.85 Score=48.59 Aligned_cols=109 Identities=20% Similarity=0.148 Sum_probs=72.3
Q ss_pred hHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCcCHHHHHhhcC
Q 016903 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 228 (380)
Q Consensus 149 lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~~~~~~~~~~~~~~~~~~a~a~G 228 (380)
.-+|-|.|.+. +.-.++++..|=|.++ ..-++..|...++|||+|.-.-...... .......|....++.+-
T Consensus 72 ~~~AdgYar~t---g~~gv~~~t~GpG~~N---~l~gl~~A~~~~~Pvl~i~G~~~~~~~~--~~~~q~~d~~~l~~~it 143 (587)
T PRK06965 72 VHAADGYARAT---GKVGVALVTSGPGVTN---AVTGIATAYMDSIPMVVISGQVPTAAIG--QDAFQECDTVGITRPIV 143 (587)
T ss_pred HHHHHHHHHHh---CCCeEEEECCCccHHH---HHHHHHHHhhcCCCEEEEecCCCccccC--CCCcccccHHHHhcCCc
Confidence 34666776553 3445666667888886 3455777888899999998432211110 11111235556677776
Q ss_pred ceEEEEeCCCHHHHHHHHHHHHHHhhcc-CCcEEEEEEee
Q 016903 229 VRSIRVDGNDALAIYSAVHAAREMAIGE-GRPILIEALTY 267 (380)
Q Consensus 229 ~~~~~VdG~D~~av~~a~~~a~~~ar~~-~gP~lIe~~t~ 267 (380)
-...+|. +++++...+.+|+..++.+ .||+.|++-..
T Consensus 144 k~~~~v~--~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~D 181 (587)
T PRK06965 144 KHNFLVK--DVRDLAETVKKAFYIARTGRPGPVVVDIPKD 181 (587)
T ss_pred ceeEEeC--CHHHHHHHHHHHHHHHhcCCCCeEEEEeChh
Confidence 6677777 8899999999999888887 49999988653
No 194
>PRK08155 acetolactate synthase catalytic subunit; Validated
Probab=93.09 E-value=0.73 Score=48.75 Aligned_cols=108 Identities=18% Similarity=0.141 Sum_probs=70.6
Q ss_pred hHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCcCHHHHHhhcC
Q 016903 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 228 (380)
Q Consensus 149 lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~~~~~~~~~~~~~~~~~~a~a~G 228 (380)
.-+|.|.|++. +.-.++++..|=|.++ ..-++..|...+.|||+|.-.-....... .....-|....++.+-
T Consensus 64 ~~~Adgyar~t---g~~gv~~~t~GpG~~N---~l~gl~~A~~~~~Pvl~i~G~~~~~~~~~--~~~q~~d~~~~~~~~t 135 (564)
T PRK08155 64 GFIAQGMARTT---GKPAVCMACSGPGATN---LVTAIADARLDSIPLVCITGQVPASMIGT--DAFQEVDTYGISIPIT 135 (564)
T ss_pred HHHHHHHHHHc---CCCeEEEECCCCcHHH---HHHHHHHHHhcCCCEEEEeccCCcccccC--CCccccchhhhhhccc
Confidence 34566776653 3334555566888886 34567778889999999985433221111 1111124445566655
Q ss_pred ceEEEEeCCCHHHHHHHHHHHHHHhhcc-CCcEEEEEEe
Q 016903 229 VRSIRVDGNDALAIYSAVHAAREMAIGE-GRPILIEALT 266 (380)
Q Consensus 229 ~~~~~VdG~D~~av~~a~~~a~~~ar~~-~gP~lIe~~t 266 (380)
-...+|+ ++.++...+.+|+..++.+ .||+.|++-.
T Consensus 136 k~~~~v~--~~~~~~~~i~~A~~~a~~~~~GPV~i~iP~ 172 (564)
T PRK08155 136 KHNYLVR--DIEELPQVISDAFRIAQSGRPGPVWIDIPK 172 (564)
T ss_pred eEEEEcC--CHHHHHHHHHHHHHHHhcCCCCcEEEEcCH
Confidence 5566676 8999999999999888887 4999999854
No 195
>PRK05858 hypothetical protein; Provisional
Probab=92.63 E-value=1 Score=47.52 Aligned_cols=108 Identities=15% Similarity=0.019 Sum_probs=71.1
Q ss_pred hHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCcCHHHHHhhcC
Q 016903 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 228 (380)
Q Consensus 149 lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~~~~~~~~~~~~~~~~~~a~a~G 228 (380)
.-+|-|.|.+. +.-.++++..|=|.++ ..-++..|..-+.|||+|.-+-....... ......|....++.+-
T Consensus 55 ~~~AdGyar~t---g~~gv~~~t~GpG~~n---~~~~i~~A~~~~~Pvl~i~g~~~~~~~~~--~~~q~~d~~~l~~~~t 126 (542)
T PRK05858 55 AFAAEAWAKLT---RVPGVAVLTAGPGVTN---GMSAMAAAQFNQSPLVVLGGRAPALRWGM--GSLQEIDHVPFVAPVT 126 (542)
T ss_pred HHHHHHHHHhc---CCCeEEEEcCCchHHH---HHHHHHHHHhcCCCEEEEeCCCCcccCCC--CCCcccchhhhhhhhh
Confidence 44566666552 3344556666888776 34567788888999999885443221111 1111234556777776
Q ss_pred ceEEEEeCCCHHHHHHHHHHHHHHhhcc-CCcEEEEEEe
Q 016903 229 VRSIRVDGNDALAIYSAVHAAREMAIGE-GRPILIEALT 266 (380)
Q Consensus 229 ~~~~~VdG~D~~av~~a~~~a~~~ar~~-~gP~lIe~~t 266 (380)
-...+|+ +++.+.+.+.+|+..+..+ .||+.|++-.
T Consensus 127 k~~~~v~--~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~ 163 (542)
T PRK05858 127 KFAATAQ--SAENAGRLVDQALQAAVTPHRGPVFVDFPM 163 (542)
T ss_pred ceEEEeC--CHHHHHHHHHHHHHHHcCCCCCeEEEEcCh
Confidence 6777776 7888999999998877765 5899998864
No 196
>PRK07282 acetolactate synthase catalytic subunit; Reviewed
Probab=92.59 E-value=0.85 Score=48.34 Aligned_cols=108 Identities=19% Similarity=0.161 Sum_probs=72.3
Q ss_pred hHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCcCHHHHHhhcC
Q 016903 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 228 (380)
Q Consensus 149 lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~~~~~~~~~~~~~~~~~~a~a~G 228 (380)
.-+|-|.|... +.-.++++..|=|.++ ..-++..|..-++|||+|.-........ .......|....++.+-
T Consensus 61 ~~~Adgyar~t---g~~gv~~~t~GPG~~n---~~~gla~A~~~~~Pvl~i~G~~~~~~~~--~~~~q~~d~~~~~~~it 132 (566)
T PRK07282 61 LHEAEGYAKST---GKLGVAVVTSGPGATN---AITGIADAMSDSVPLLVFTGQVARAGIG--KDAFQEADIVGITMPIT 132 (566)
T ss_pred HHHHHHHHHHh---CCCeEEEECCCccHHH---HHHHHHHHhhcCCCEEEEecccccccCC--CCCccccChhchhcCCC
Confidence 44566666543 4445677777999886 3456777888899999998653321111 11111124455666666
Q ss_pred ceEEEEeCCCHHHHHHHHHHHHHHhhccC-CcEEEEEEe
Q 016903 229 VRSIRVDGNDALAIYSAVHAAREMAIGEG-RPILIEALT 266 (380)
Q Consensus 229 ~~~~~VdG~D~~av~~a~~~a~~~ar~~~-gP~lIe~~t 266 (380)
-...+|+ +++++...+.+|+..++.+. ||+.|++-.
T Consensus 133 k~s~~v~--~~~~~~~~l~~A~~~A~~~~~GPV~l~iP~ 169 (566)
T PRK07282 133 KYNYQIR--ETADIPRIITEAVHIATTGRPGPVVIDLPK 169 (566)
T ss_pred ceeEEcC--CHHHHHHHHHHHHHHHhcCCCCeEEEeCCh
Confidence 6666776 88899999999999888874 999998765
No 197
>PRK08327 acetolactate synthase catalytic subunit; Validated
Probab=92.49 E-value=0.69 Score=49.07 Aligned_cols=110 Identities=15% Similarity=0.141 Sum_probs=72.8
Q ss_pred hHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCccccccc----c--cccCC-cCHH
Q 016903 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPI----S--DQFRS-DGAV 221 (380)
Q Consensus 149 lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~~~~~~----~--~~~~~-~~~~ 221 (380)
.-+|-|.|.. .++-.++++..|=|.++ ..-++..|..-+.|||+|+-.-........ . ..+.. .|..
T Consensus 63 ~~~Adgyar~---tgk~gv~~~t~GPG~~N---~~~gla~A~~d~~Pvl~I~G~~~~~~~~~~~~~~~~~~~~qe~~d~~ 136 (569)
T PRK08327 63 ISMAHGYALV---TGKPQAVMVHVDVGTAN---ALGGVHNAARSRIPVLVFAGRSPYTEEGELGSRNTRIHWTQEMRDQG 136 (569)
T ss_pred HHHHHHHHHh---hCCCeEEEEecCHHHHH---HHHHHHHHhhcCCCEEEEeccCCccccccccccccCcccchhhhhHH
Confidence 3456666554 23445667777888886 446688888889999999975432221100 0 01111 2555
Q ss_pred HHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhcc-CCcEEEEEEe
Q 016903 222 VKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGE-GRPILIEALT 266 (380)
Q Consensus 222 ~~a~a~G~~~~~VdG~D~~av~~a~~~a~~~ar~~-~gP~lIe~~t 266 (380)
..++.+--...+|+ +++++..++.+|+..++.+ .||+.|++-.
T Consensus 137 ~~~~~vtk~~~~v~--~~~~~~~~l~~A~~~a~~~~~GPV~i~iP~ 180 (569)
T PRK08327 137 GLVREYVKWDYEIR--RGDQIGEVVARAIQIAMSEPKGPVYLTLPR 180 (569)
T ss_pred HHHhhhhhhhcccC--CHHHHHHHHHHHHHHHhcCCCCCEEEECcH
Confidence 66666655566777 8899999999999888876 6999998863
No 198
>TIGR02720 pyruv_oxi_spxB pyruvate oxidase. Members of this family are examples of pyruvate oxidase (EC 1.2.3.3), an enzyme with FAD and TPP as cofactors that catalyzes the reaction pyruvate + phosphate + O2 + H2O = acetyl phosphate + CO2 + H2O2. It should not be confused with pyruvate dehydrogenase [cytochrome] (EC 1.2.2.2) as in E. coli PoxB, although the E. coli enzyme is closely homologous and has pyruvate oxidase as an alternate name.
Probab=92.46 E-value=1.1 Score=47.59 Aligned_cols=108 Identities=14% Similarity=0.013 Sum_probs=70.1
Q ss_pred HHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCcCHHHHHhhcCc
Q 016903 150 PHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGV 229 (380)
Q Consensus 150 p~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~~~~~~~~~~~~~~~~~~a~a~G~ 229 (380)
-+|-|.|.+ .+.-.++++..|=|.++ ..-++..|...++|||+|+-.-...... .......+....++.+--
T Consensus 52 ~~Adgyar~---tgk~gv~~~t~GPG~~n---~~~~i~~A~~~~~Pvl~I~G~~~~~~~~--~~~~q~id~~~~~~~vtk 123 (575)
T TIGR02720 52 LAAAADAKL---TGKIGVCFGSAGPGATH---LLNGLYDAKEDHVPVLALVGQVPTTGMN--MDTFQEMNENPIYADVAV 123 (575)
T ss_pred HHHHHHHHh---hCCceEEEeCCCCcHHH---HHHHHHHHhhcCCCEEEEecCCccccCC--CCCcceechhhhhhhcce
Confidence 345565543 34456677777888886 4456777888899999998654322111 111111244455666554
Q ss_pred eEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEee
Q 016903 230 RSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTY 267 (380)
Q Consensus 230 ~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t~ 267 (380)
...+|. +++.+...+.+|+..|....||+.|++-..
T Consensus 124 ~~~~v~--~~~~~~~~i~~A~~~A~~~~GPV~l~iP~D 159 (575)
T TIGR02720 124 YNRTAM--TAESLPHVIDEAIRRAYAHNGVAVVTIPVD 159 (575)
T ss_pred EEEEeC--CHHHHHHHHHHHHHHHhhCCCCEEEEECcc
Confidence 555665 788888888888888778889999988643
No 199
>PRK09627 oorA 2-oxoglutarate-acceptor oxidoreductase subunit OorA; Reviewed
Probab=92.44 E-value=0.77 Score=46.26 Aligned_cols=115 Identities=17% Similarity=0.186 Sum_probs=73.7
Q ss_pred hHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCC-cccccccccccCCcCH-HHHHhh
Q 016903 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPISDQFRSDGA-VVKGRA 226 (380)
Q Consensus 149 lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~-~~~~~~~~~~~~~~~~-~~~a~a 226 (380)
+.+|+|+++| +.++++.+.=+++. ..+|.+.+|+-..+|+|+++.+-. -+...++... ..|+ ..+..+
T Consensus 60 ~~~a~GAs~a------G~Ra~taTSg~G~~--lm~E~~~~a~~~e~P~V~~~~~R~GpstG~p~~~~--q~D~~~~~~~~ 129 (375)
T PRK09627 60 ISVALGASMS------GVKSMTASSGPGIS--LKAEQIGLGFIAEIPLVIVNVMRGGPSTGLPTRVA--QGDVNQAKNPT 129 (375)
T ss_pred HHHHHHHHhh------CCCEEeecCCchHH--HHhhHHHHHHhccCCEEEEEeccCCCcCCCCCccc--hHHHHHHhcCC
Confidence 6778888877 23455555434443 367999999999999888776643 1111121111 1122 223332
Q ss_pred cC-ceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCCCCCCC
Q 016903 227 YG-VRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTS 275 (380)
Q Consensus 227 ~G-~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t~R~~gHs~~ 275 (380)
+| .+.+.+.-.|+.++++....|++.+.+..-|++|-..+ +. +|+..
T Consensus 130 hgd~~~ivl~p~~~qEa~d~t~~Af~lAE~~~~PViv~~D~-~l-sh~~~ 177 (375)
T PRK09627 130 HGDFKSIALAPGSLEEAYTETVRAFNLAERFMTPVFLLLDE-TV-GHMYG 177 (375)
T ss_pred CCCcCcEEEeCCCHHHHHHHHHHHHHHHHHHcCceEEecch-HH-hCCee
Confidence 32 23345666799999999999999988889999998888 44 67643
No 200
>KOG4166 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=92.39 E-value=0.77 Score=46.48 Aligned_cols=149 Identities=17% Similarity=0.196 Sum_probs=84.9
Q ss_pred CCCHHHHHHHhhcCCC-----CCCCCCCCccccCC---CCCCccccCcccccchHHHHHHHHHhhhcCCCCeeEEEeCcc
Q 016903 104 GFSMQEFANQCFGNKA-----DYGKGRQMPIHYGS---NKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDG 175 (380)
Q Consensus 104 G~~~~~~~~e~~g~~~-----~~~~G~~~~~H~~~---~~~~~~~~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDG 175 (380)
|.+-.++|.+++.+.. |+-.|.-++.|-.. ...++.- .-+=-.+.=+|-|.|.+. ++..+|++..|-|
T Consensus 90 g~tGg~If~emm~rqnV~tVFgYPGGAilpv~dAi~rS~~f~fvL-PrHEQgaghaAegYaR~s---gKPGvvlvTSGPG 165 (675)
T KOG4166|consen 90 GRTGGDIFVEMMERQNVETVFGYPGGAILPVHDAITRSSSFRFVL-PRHEQGAGHAAEGYARSS---GKPGVVLVTSGPG 165 (675)
T ss_pred CCchhHHHHHHHHhcCCceEeecCCcceeehHhhhhcCccccccc-cccccccchhhhhhhhhc---CCCcEEEEecCCC
Confidence 4444567777666543 34466667776332 1222211 111111223455666554 5678999999999
Q ss_pred ccCcchHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCcCHHHHHhhc-CceEEEEeCCCHHHHHHHHHHHHHHhh
Q 016903 176 GTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAY-GVRSIRVDGNDALAIYSAVHAAREMAI 254 (380)
Q Consensus 176 ~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~~~~~~~~~~~~~~~~~~a~a~-G~~~~~VdG~D~~av~~a~~~a~~~ar 254 (380)
+++ +.--|.-|-.-++|+|++- .+..-+.-..+.+...++...-+++ -|++.. .|++++...+.+|++.|-
T Consensus 166 ATN---vvtp~ADAlaDg~PlVvft--GQVptsaIGtDAFQEadiVgisRScTKwNvmV---kdVedlPrrI~EAFeiAT 237 (675)
T KOG4166|consen 166 ATN---VVTPLADALADGVPLVVFT--GQVPTSAIGTDAFQEADIVGISRSCTKWNVMV---KDVEDLPRRIEEAFEIAT 237 (675)
T ss_pred ccc---ccchhhHHhhcCCcEEEEe--cccchhhcccchhccCCeeeeeeccceeheee---ecHHHhhHHHHHHhhhhc
Confidence 997 3344666667788977654 2221111111222223444444444 344433 378899999999998877
Q ss_pred cc-CCcEEEEE
Q 016903 255 GE-GRPILIEA 264 (380)
Q Consensus 255 ~~-~gP~lIe~ 264 (380)
.+ .||+|+++
T Consensus 238 SGRPGPVLVDl 248 (675)
T KOG4166|consen 238 SGRPGPVLVDL 248 (675)
T ss_pred cCCCCCeEeeC
Confidence 66 48999976
No 201
>cd07036 TPP_PYR_E1-PDHc-beta_like Pyrimidine (PYR) binding domain of the beta subunits of the E1 components of human pyruvate dehydrogenase complex (E1- PDHc) and related proteins. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain of the beta subunits of the E1 components of: human pyruvate dehydrogenase complex (E1- PDHc), the acetoin dehydrogenase complex (ADC), and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC), subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domain
Probab=92.26 E-value=1 Score=40.03 Aligned_cols=99 Identities=14% Similarity=0.057 Sum_probs=58.3
Q ss_pred chHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHH-HHHHHc--------CCCEEEEEEcCCcccccccccccCCc
Q 016903 148 QLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAAL-NFSAVT--------EAPVIFICRNNGWAISTPISDQFRSD 218 (380)
Q Consensus 148 ~lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal-~~A~~~--------~Lpvi~vv~NN~~~~~~~~~~~~~~~ 218 (380)
.++.|.|+|+. +.++|+.+.=+.|.. -.+|-+ +-++.+ ++||++++..-+++..+++. +..
T Consensus 56 ~vg~AaGlA~~------G~~pi~~~~~a~Fl~-ra~dQi~~~~a~~~~~~~~~~~~pv~i~~~~gg~~~~G~th---s~~ 125 (167)
T cd07036 56 IVGLAVGAAMN------GLRPIVEIMFADFAL-PAFDQIVNEAAKLRYMSGGQFKVPIVIRGPNGGGIGGGAQH---SQS 125 (167)
T ss_pred HHHHHHHHHHc------CCEEEEEeehHHHHH-HHHHHHHHHHHHHHHhcCCCccCCEEEEEeCCCCCCcChhh---hhh
Confidence 35556666653 235555433344433 233433 334443 58999999766655444431 223
Q ss_pred CHHHHHhhc-CceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEE
Q 016903 219 GAVVKGRAY-GVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIE 263 (380)
Q Consensus 219 ~~~~~a~a~-G~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe 263 (380)
++ ...+++ |+.++.-. |+.+....++.++++ ++|+++-
T Consensus 126 ~~-a~lr~iPg~~V~~Ps--d~~e~~~~l~~~~~~----~~P~~~~ 164 (167)
T cd07036 126 LE-AWFAHIPGLKVVAPS--TPYDAKGLLKAAIRD----DDPVIFL 164 (167)
T ss_pred HH-HHHhcCCCCEEEeeC--CHHHHHHHHHHHHhC----CCcEEEE
Confidence 33 445555 66666655 899999999998863 6899874
No 202
>PRK06048 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=92.21 E-value=1.1 Score=47.53 Aligned_cols=108 Identities=19% Similarity=0.179 Sum_probs=71.0
Q ss_pred hHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCcCHHHHHhhcC
Q 016903 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 228 (380)
Q Consensus 149 lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~~~~~~~~~~~~~~~~~~a~a~G 228 (380)
.-+|.|.|.+. +.-.++++..|=|.++ ..-++..|..-+.|||+|.-.-...... .......|....++.+-
T Consensus 58 ~~~Adgyar~t---g~~~v~~~t~GpG~~n---~~~gl~~A~~~~~Pvl~i~G~~~~~~~~--~~~~q~~d~~~~~~~it 129 (561)
T PRK06048 58 AHAADGYARAT---GKVGVCVATSGPGATN---LVTGIATAYMDSVPIVALTGQVPRSMIG--NDAFQEADITGITMPIT 129 (561)
T ss_pred HHHHHHHHHHh---CCCeEEEECCCCcHHH---HHHHHHHHhhcCCCEEEEeccCCccccC--CCCccccchhhhccCcc
Confidence 45566666553 4445667777888886 3456777888899999998532221111 11111224555666665
Q ss_pred ceEEEEeCCCHHHHHHHHHHHHHHhhcc-CCcEEEEEEe
Q 016903 229 VRSIRVDGNDALAIYSAVHAAREMAIGE-GRPILIEALT 266 (380)
Q Consensus 229 ~~~~~VdG~D~~av~~a~~~a~~~ar~~-~gP~lIe~~t 266 (380)
-...+|. ++.++...+.+|+..++.+ .||+.|++-.
T Consensus 130 k~s~~v~--~~~~i~~~i~~A~~~A~~~~~GPV~l~iP~ 166 (561)
T PRK06048 130 KHNYLVQ--DAKDLPRIIKEAFHIASTGRPGPVLIDLPK 166 (561)
T ss_pred eEEEEeC--CHHHHHHHHHHHHHHHhcCCCCeEEEecCh
Confidence 5566676 8899999999999888876 4899998854
No 203
>PRK08617 acetolactate synthase; Reviewed
Probab=92.21 E-value=0.96 Score=47.68 Aligned_cols=107 Identities=16% Similarity=0.048 Sum_probs=70.3
Q ss_pred HHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCcCHHHHHhhcCc
Q 016903 150 PHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGV 229 (380)
Q Consensus 150 p~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~~~~~~~~~~~~~~~~~~a~a~G~ 229 (380)
-+|.|.|.+ .+.-.++++..|=|.++ ..-++..|..-+.|||+|.-......... ......|....++.+--
T Consensus 56 ~~A~gyar~---tg~~gv~~vt~GpG~~N---~l~gl~~A~~~~~PvlvisG~~~~~~~~~--~~~q~~d~~~l~~~~tk 127 (552)
T PRK08617 56 FMAAAIGRL---TGKPGVVLVTSGPGVSN---LATGLVTATAEGDPVVAIGGQVKRADRLK--RTHQSMDNVALFRPITK 127 (552)
T ss_pred HHHHhHhhh---cCCCEEEEECCCCcHhH---hHHHHHHHhhcCCCEEEEecCCcccccCC--CCccccchhhhhhhhcc
Confidence 345555543 23345566666888886 34567778888999999985333211111 11112345566777766
Q ss_pred eEEEEeCCCHHHHHHHHHHHHHHhhcc-CCcEEEEEEe
Q 016903 230 RSIRVDGNDALAIYSAVHAAREMAIGE-GRPILIEALT 266 (380)
Q Consensus 230 ~~~~VdG~D~~av~~a~~~a~~~ar~~-~gP~lIe~~t 266 (380)
...+|+ +++++...+.+|+..+..+ .||+.|++-.
T Consensus 128 ~~~~v~--~~~~~~~~i~~A~~~a~~~~~GPV~l~iP~ 163 (552)
T PRK08617 128 YSAEVQ--DPDNLSEVLANAFRAAESGRPGAAFVSLPQ 163 (552)
T ss_pred eEEEeC--CHHHHHHHHHHHHHHHccCCCCcEEEeChh
Confidence 677776 8999999999999888776 4899998864
No 204
>TIGR02418 acolac_catab acetolactate synthase, catabolic. Acetolactate synthase (EC 2.2.1.6) combines two molecules of pyruvate to yield 2-acetolactate with the release of CO2. This reaction may be involved in either valine biosynthesis (biosynthetic) or conversion of pyruvate to acetoin and possibly to 2,3-butanediol (catabolic). The biosynthetic type, described by TIGR00118, is also capable of forming acetohydroxybutyrate from pyruvate and 2-oxobutyrate for isoleucine biosynthesis. The family described here, part of the same larger family of thiamine pyrophosphate-dependent enzymes (pfam00205, pfam02776) is the catabolic form, generally found associated with in species with acetolactate decarboxylase and usually found in the same operon. The model may not encompass all catabolic acetolactate synthases, but rather one particular clade in the larger TPP-dependent enzyme family.
Probab=92.02 E-value=1.2 Score=46.75 Aligned_cols=108 Identities=19% Similarity=0.043 Sum_probs=70.0
Q ss_pred HHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCcCHHHHHhhcCc
Q 016903 150 PHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGV 229 (380)
Q Consensus 150 p~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~~~~~~~~~~~~~~~~~~a~a~G~ 229 (380)
-+|.|.|.. .+.-.++++..|=|.++ ..-++..|..-+.|||+|+-.-...... ...+...+....++.+--
T Consensus 50 ~~Adgyar~---tg~~gv~~~t~GpG~~n---~l~gl~~A~~~~~Pvl~I~G~~~~~~~~--~~~~q~~d~~~~~~~~tk 121 (539)
T TIGR02418 50 FMAQAVGRI---TGKPGVALVTSGPGCSN---LVTGLATANSEGDPVVAIGGQVKRADLL--KLTHQSMDNVALFRPITK 121 (539)
T ss_pred HHHHHHHHH---hCCceEEEECCCCCHhH---HHHHHHHHhhcCCCEEEEeCCCcccccc--cCcccccchhhhhhccee
Confidence 355565543 33445667777888886 3456777888899999998643322111 111112345566666544
Q ss_pred eEEEEeCCCHHHHHHHHHHHHHHhhcc-CCcEEEEEEee
Q 016903 230 RSIRVDGNDALAIYSAVHAAREMAIGE-GRPILIEALTY 267 (380)
Q Consensus 230 ~~~~VdG~D~~av~~a~~~a~~~ar~~-~gP~lIe~~t~ 267 (380)
...+++ +++++...+.+|+..+..+ .||+.|++-..
T Consensus 122 ~~~~i~--~~~~~~~~~~~A~~~a~~~~~GPV~l~iP~d 158 (539)
T TIGR02418 122 YSAEVQ--DPDALSEVVANAFRAAESGKPGAAFVSLPQD 158 (539)
T ss_pred eeeecC--CHHHHHHHHHHHHHHHhcCCCCCEEEEcChh
Confidence 555665 8899999999999887776 48999988653
No 205
>TIGR03710 OAFO_sf 2-oxoacid:acceptor oxidoreductase, alpha subunit. The genes for this enzyme in Prevotella intermedia 17, Persephonella marina EX-H1 and Picrophilus torridus DSM 9790 are in close proximity to a variety of TCA cycle genes. Persephonella marina and P. torridus are believed to encode complete TCA cycles, and none of these contains the lipoate-based 2-oxoglutarate dehydrogenase (E1/E2/E3) system. That system is presumed to be replaced by this one. In fact, the lipoate system is absent in most organisms possessing a member of this family, providing additional circumstantial evidence that many of these enzymes are capable of acting as 2-oxoglutarate dehydrogenases and supporting flux through TCA cycles in either the forward or reverse directions.
Probab=92.00 E-value=0.76 Score=48.77 Aligned_cols=109 Identities=18% Similarity=0.223 Sum_probs=71.2
Q ss_pred chHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcccc-cccccccCCcCHH-HHHh
Q 016903 148 QLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAIS-TPISDQFRSDGAV-VKGR 225 (380)
Q Consensus 148 ~lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~~~-~~~~~~~~~~~~~-~~a~ 225 (380)
.+.+|+|+++| +.++++.+-=.+++ ...|.|.+|+-..+|+|+++.+..--.+ .++. ....|+. .+..
T Consensus 249 A~~~a~GAs~a------G~Ra~taTSg~Gl~--lm~E~l~~a~~~~~P~Vi~~~~R~gpstg~~t~--~eq~D~~~~~~~ 318 (562)
T TIGR03710 249 AINMAIGASYA------GARAMTATSGPGFA--LMTEALGLAGMTETPLVIVDVQRGGPSTGLPTK--TEQSDLLFALYG 318 (562)
T ss_pred HHHHHHhHHhc------CCceeecCCCCChh--HhHHHHhHHHhccCCEEEEEcccCCCCCCCCCC--ccHHHHHHHhcC
Confidence 36778888876 23455555444443 5789999999999998887766542211 1111 1111221 2222
Q ss_pred h---cCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeec
Q 016903 226 A---YGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 268 (380)
Q Consensus 226 a---~G~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t~R 268 (380)
+ ++|.+ +...|+.++++....|++.+.+..-|+++-...+.
T Consensus 319 ~hgd~~~iv--l~p~~~qEa~d~~~~Af~lAe~~~~PViv~~D~~l 362 (562)
T TIGR03710 319 GHGEFPRIV--LAPGSPEECFYLAIEAFNLAEKYQTPVIVLSDQYL 362 (562)
T ss_pred CCCCcCceE--EcCCCHHHHHHHHHHHHHHHHHhcCCEEEEechHH
Confidence 2 23544 45559999999999999998889999999988874
No 206
>PF02779 Transket_pyr: Transketolase, pyrimidine binding domain; InterPro: IPR005475 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; PDB: 2BFF_B 2BEV_B 1OLS_B 1V16_B 2BFD_B 1V1M_B 2BFC_B 1X80_B 1X7W_B 1OLX_B ....
Probab=91.88 E-value=2.2 Score=38.00 Aligned_cols=106 Identities=17% Similarity=0.099 Sum_probs=60.8
Q ss_pred chHHHHHHHHHhhhcCC-CCeeEEEeCccccC-cchHHHHHH-HHHHcCCCEEEEEEcCCc--ccccccccccCCcCHHH
Q 016903 148 QLPHAVGAAYALKMDRK-DACAVTYFGDGGTS-EGDFHAALN-FSAVTEAPVIFICRNNGW--AISTPISDQFRSDGAVV 222 (380)
Q Consensus 148 ~lp~A~G~A~A~k~~~~-~~~vv~~~GDG~~~-eG~~~Eal~-~A~~~~Lpvi~vv~NN~~--~~~~~~~~~~~~~~~~~ 222 (380)
.+++|.|+|++ ++ ..+++..+++=... +-..++.+. ..+..++|+. |+..-++ +..+++. .+..+ ..
T Consensus 60 ~vg~a~GlA~~----G~~~~~~~~~f~~F~~~~q~r~~~~~~~~~~~~~~~v~-v~~~~g~~~~~~G~tH--~s~~d-~~ 131 (178)
T PF02779_consen 60 MVGMAAGLALA----GGLRPPVESTFADFLTPAQIRAFDQIRNDMAYGQLPVP-VGTRAGLGYGGDGGTH--HSIED-EA 131 (178)
T ss_dssp HHHHHHHHHHH----SSSEEEEEEEEGGGGGGGHHHHHHHHHHHHHHHTS-EE-EEEEESGGGSTTGTTT--SSSSH-HH
T ss_pred ccceeeeeeec----ccccceeEeeccccccccchhhhhhhhhhhhcccceec-ceeecCcccccccccc--ccccc-cc
Confidence 36677777765 32 23344444433220 123445555 6777899988 5555544 3333333 23333 34
Q ss_pred HHhhc-CceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEE
Q 016903 223 KGRAY-GVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEAL 265 (380)
Q Consensus 223 ~a~a~-G~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~ 265 (380)
..+++ |+.++.-. |+.++...++.+++. +.++|++|-..
T Consensus 132 ~~~~iPg~~v~~Ps--d~~e~~~~l~~a~~~--~~~~P~~ir~~ 171 (178)
T PF02779_consen 132 ILRSIPGMKVVVPS--DPAEAKGLLRAAIRR--ESDGPVYIREP 171 (178)
T ss_dssp HHHTSTTEEEEE-S--SHHHHHHHHHHHHHS--SSSSEEEEEEE
T ss_pred ccccccccccccCC--CHHHHHHHHHHHHHh--CCCCeEEEEee
Confidence 44444 77777655 999999999999862 24799988653
No 207
>PRK08367 porA pyruvate ferredoxin oxidoreductase subunit alpha; Reviewed
Probab=91.84 E-value=1.3 Score=44.84 Aligned_cols=113 Identities=19% Similarity=0.206 Sum_probs=74.5
Q ss_pred chHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCcCHHHHHhhc
Q 016903 148 QLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAY 227 (380)
Q Consensus 148 ~lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~~~~~~~~~~~~~~~~~~a~a~ 227 (380)
.+.+++|++++ +.++++.+-=.+++ ..+|.|..|+-.++|+|+++-|-..+. +..-.....|+ .-.+..
T Consensus 62 A~~~~~GAs~a------GaRa~TaTS~~Gl~--lm~E~l~~aag~~lP~V~vv~~R~~~~--p~~i~~d~~D~-~~~rd~ 130 (394)
T PRK08367 62 AISACVGASAA------GVRTFTATASQGLA--LMHEVLFIAAGMRLPIVMAIGNRALSA--PINIWNDWQDT-ISQRDT 130 (394)
T ss_pred HHHHHHHHHhh------CCCeEeeeccchHH--HHhhHHHHHHHccCCEEEEECCCCCCC--CCCcCcchHHH-Hhcccc
Confidence 36778888876 23455544333332 468999999999999999886654432 22211111122 123456
Q ss_pred CceEEEEeCCCHHHHHHHHHHHHHHhhccC--CcEEEEEEeecCCCCCC
Q 016903 228 GVRSIRVDGNDALAIYSAVHAAREMAIGEG--RPILIEALTYRVGHHTT 274 (380)
Q Consensus 228 G~~~~~VdG~D~~av~~a~~~a~~~ar~~~--gP~lIe~~t~R~~gHs~ 274 (380)
||-.+.. .|+.++++-...|.+.+.+.+ -|+++-...||. +|+.
T Consensus 131 g~~~~~a--~~~QEa~D~~~~Af~lAE~~~~~~Pviv~~Dgf~~-sH~~ 176 (394)
T PRK08367 131 GWMQFYA--ENNQEALDLILIAFKVAEDERVLLPAMVGFDAFIL-THTV 176 (394)
T ss_pred CeEEEeC--CCHHHHHHHHHHHHHHHHHhCcCCCEEEEechhhh-cCcc
Confidence 7666554 699999999999998877443 799999999886 4653
No 208
>PLN02573 pyruvate decarboxylase
Probab=91.77 E-value=1.1 Score=47.54 Aligned_cols=109 Identities=17% Similarity=0.098 Sum_probs=68.8
Q ss_pred HHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcccccc---cccccCCcC---HHHH
Q 016903 150 PHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTP---ISDQFRSDG---AVVK 223 (380)
Q Consensus 150 p~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~~~~~---~~~~~~~~~---~~~~ 223 (380)
-+|-|.|.+. + ..++++..|=|.++ ..-++..|..-+.|||+|.-.-....... .+......+ ..+.
T Consensus 68 ~mAdgyaR~t---g-~gv~~~t~GpG~~n---~~~gla~A~~d~~Pvl~I~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (578)
T PLN02573 68 YAADGYARAR---G-VGACVVTFTVGGLS---VLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFSQELRC 140 (578)
T ss_pred HHHHHHHHHh---C-CCeEEEecCccHHH---HHHHHHHHHHhCCCEEEEECCCChhhhhcCceeeeecCCCChHHHHHH
Confidence 3555666543 4 45677777888876 33457778888899999986443321110 000000011 1244
Q ss_pred HhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEee
Q 016903 224 GRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTY 267 (380)
Q Consensus 224 a~a~G~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t~ 267 (380)
++.+--...+|. ++..+...+++|+..|+.+.||+.|++-..
T Consensus 141 ~~~itk~s~~v~--~~~~~~~~l~~A~~~A~~~~gPV~l~iP~D 182 (578)
T PLN02573 141 FQTVTCYQAVIN--NLEDAHELIDTAISTALKESKPVYISVSCN 182 (578)
T ss_pred hhceEEEEEEeC--CHHHHHHHHHHHHHHHHhcCCCEEEEeehh
Confidence 555555566676 888888889999988888889999988543
No 209
>PRK08527 acetolactate synthase 3 catalytic subunit; Validated
Probab=91.74 E-value=1.2 Score=47.01 Aligned_cols=108 Identities=20% Similarity=0.155 Sum_probs=70.1
Q ss_pred hHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCcCHHHHHhhcC
Q 016903 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 228 (380)
Q Consensus 149 lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~~~~~~~~~~~~~~~~~~a~a~G 228 (380)
.-+|-|.|+. .+.-.++++..|=|.++ ..-++..|..-+.|||+|.-.-...... .......|....++.+-
T Consensus 54 ~~~Adgyar~---tg~~gv~~~t~GpG~~n---~~~gla~A~~~~~Pvl~i~G~~~~~~~~--~~~~q~~d~~~~~~~~t 125 (563)
T PRK08527 54 VHAADGYARA---SGKVGVAIVTSGPGFTN---AVTGLATAYMDSIPLVLISGQVPNSLIG--TDAFQEIDAVGISRPCV 125 (563)
T ss_pred HHHHHHHHhh---hCCCEEEEECCCCcHHH---HHHHHHHHhhcCCCEEEEecCCCccccC--CCCCcccchhhhhhccc
Confidence 4455666544 24445667777888886 3456777888899999998532211100 01111124445666665
Q ss_pred ceEEEEeCCCHHHHHHHHHHHHHHhhccC-CcEEEEEEe
Q 016903 229 VRSIRVDGNDALAIYSAVHAAREMAIGEG-RPILIEALT 266 (380)
Q Consensus 229 ~~~~~VdG~D~~av~~a~~~a~~~ar~~~-gP~lIe~~t 266 (380)
-...+|+ +++++..++++|+..++.+. ||+.|++-.
T Consensus 126 k~s~~v~--~~~~i~~~l~~A~~~a~s~~~GPV~l~iP~ 162 (563)
T PRK08527 126 KHNYLVK--SIEELPRILKEAFYIARSGRPGPVHIDIPK 162 (563)
T ss_pred ceEEEcC--CHHHHHHHHHHHHHHHhcCCCCcEEEEcCH
Confidence 5556665 99999999999998888765 899998864
No 210
>PRK09622 porA pyruvate flavodoxin oxidoreductase subunit alpha; Reviewed
Probab=91.57 E-value=1.4 Score=44.96 Aligned_cols=112 Identities=18% Similarity=0.173 Sum_probs=74.1
Q ss_pred chHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCcCHHHHHhhc
Q 016903 148 QLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAY 227 (380)
Q Consensus 148 ~lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~~~~~~~~~~~~~~~~~~a~a~ 227 (380)
.+.+++|++++ +.++++.+-=.+++ ..+|.|..|+-..+|+|+++.+-+.....++ .....|+.. ++.-
T Consensus 68 A~~~~~GAs~a------GaRa~TaTS~~Gl~--lm~E~l~~aa~~~~P~V~~~~~R~~~~~~~i--~~d~~D~~~-~r~~ 136 (407)
T PRK09622 68 AMSACVGAAAA------GGRVATATSSQGLA--LMVEVLYQASGMRLPIVLNLVNRALAAPLNV--NGDHSDMYL-SRDS 136 (407)
T ss_pred HHHHHHHHHhh------CcCEEeecCcchHH--HHhhHHHHHHHhhCCEEEEEeccccCCCcCC--CchHHHHHH-HhcC
Confidence 36778888876 23455554433343 4789999999999998888887775321111 111122322 2444
Q ss_pred CceEEEEeCCCHHHHHHHHHHHHHHhhcc--CCcEEEEEEeecCCCCC
Q 016903 228 GVRSIRVDGNDALAIYSAVHAAREMAIGE--GRPILIEALTYRVGHHT 273 (380)
Q Consensus 228 G~~~~~VdG~D~~av~~a~~~a~~~ar~~--~gP~lIe~~t~R~~gHs 273 (380)
||.++ ...++.++++....|.+.+.+. .-|+++-..+++. +|.
T Consensus 137 g~ivl--~p~s~QEa~d~~~~Af~lAE~~~~~~Pviv~~Dg~~~-sh~ 181 (407)
T PRK09622 137 GWISL--CTCNPQEAYDFTLMAFKIAEDQKVRLPVIVNQDGFLC-SHT 181 (407)
T ss_pred CeEEE--eCCCHHHHHHHHHHHHHHHHHhccCCCEEEEechhhh-hCc
Confidence 55554 5559999999999999888776 7899998887653 454
No 211
>CHL00099 ilvB acetohydroxyacid synthase large subunit
Probab=91.47 E-value=1.4 Score=46.92 Aligned_cols=108 Identities=22% Similarity=0.188 Sum_probs=69.8
Q ss_pred hHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCcCHHHHHhhcC
Q 016903 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 228 (380)
Q Consensus 149 lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~~~~~~~~~~~~~~~~~~a~a~G 228 (380)
.-+|.|.|.. .+.-.++++..|=|.++ ..-++..|..-+.|||+|+-.-...... .......|....++.+-
T Consensus 64 ~~~Adgyar~---tg~~gv~~~t~GPG~~N---~l~gl~~A~~~~~Pvl~I~G~~~~~~~~--~~~~q~~d~~~~~~~~t 135 (585)
T CHL00099 64 AHAADGYARS---TGKVGVCFATSGPGATN---LVTGIATAQMDSVPLLVITGQVGRAFIG--TDAFQEVDIFGITLPIV 135 (585)
T ss_pred HHHHHHHHHh---cCCcEEEEECCCCcHHH---HHHHHHHHhhcCCCEEEEecCCCccccC--CCCccccchhhhhcCce
Confidence 3455566544 24445666677888886 3456777888899999998543211100 01111124455666665
Q ss_pred ceEEEEeCCCHHHHHHHHHHHHHHhhccC-CcEEEEEEe
Q 016903 229 VRSIRVDGNDALAIYSAVHAAREMAIGEG-RPILIEALT 266 (380)
Q Consensus 229 ~~~~~VdG~D~~av~~a~~~a~~~ar~~~-gP~lIe~~t 266 (380)
-...+|. +++++...+++|+..++.+. ||+.|++-.
T Consensus 136 k~~~~v~--~~~~i~~~l~~A~~~A~~~~~GPV~l~iP~ 172 (585)
T CHL00099 136 KHSYVVR--DARDISRIVAEAFYIAKHGRPGPVLIDIPK 172 (585)
T ss_pred eEEEEeC--CHHHHHHHHHHHHHHHccCCCCeEEEecCh
Confidence 5666777 88999999999998887764 899998764
No 212
>PRK09124 pyruvate dehydrogenase; Provisional
Probab=91.37 E-value=1.6 Score=46.29 Aligned_cols=107 Identities=14% Similarity=-0.028 Sum_probs=65.6
Q ss_pred hHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCcCHHHHHhhcC
Q 016903 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 228 (380)
Q Consensus 149 lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~~~~~~~~~~~~~~~~~~a~a~G 228 (380)
.-+|.|.|.+. +.-.++++..|=|.++ ..-++..|..-++|||+|.-+-....... ......+..+.++.+-
T Consensus 54 ~~~Adgyar~t---g~~gv~~~t~GpG~~n---~~~gi~~A~~~~~Pvl~i~G~~~~~~~~~--~~~Q~~d~~~l~~~it 125 (574)
T PRK09124 54 AFAAGAEAQLT---GELAVCAGSCGPGNLH---LINGLFDCHRNHVPVLAIAAHIPSSEIGS--GYFQETHPQELFRECS 125 (574)
T ss_pred HHHHHHHHHhh---CCcEEEEECCCCCHHH---HHHHHHHHhhcCCCEEEEecCCccccCCC--CCccccChhhhcccce
Confidence 34566666542 2223333345777775 23457778888999999986543221111 1111124445566554
Q ss_pred ceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEE
Q 016903 229 VRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEAL 265 (380)
Q Consensus 229 ~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~ 265 (380)
....+|+ +++.+...+++|+..+....||+.|++-
T Consensus 126 k~~~~v~--~~~~~~~~i~~A~~~A~~~~gPV~l~iP 160 (574)
T PRK09124 126 HYCELVS--NPEQLPRVLAIAMRKAILNRGVAVVVLP 160 (574)
T ss_pred eeeEEeC--CHHHHHHHHHHHHHHHhcCCCCEEEEeC
Confidence 4555666 8888888888888888777899999874
No 213
>TIGR00204 dxs 1-deoxy-D-xylulose-5-phosphate synthase. DXP synthase is a thiamine diphosphate-dependent enzyme related to transketolase and the pyruvate dehydrogenase E1-beta subunit. By an acyloin condensation of pyruvate with glyceraldehyde 3-phosphate, it produces 1-deoxy-D-xylulose 5-phosphate, a precursor of thiamine diphosphate (TPP), pyridoxal phosphate, and the isoprenoid building block isopentenyl diphosphate (IPP).
Probab=91.30 E-value=1.3 Score=47.50 Aligned_cols=102 Identities=10% Similarity=0.069 Sum_probs=60.0
Q ss_pred hHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCccc-ccccccccCCcCHHHHHhhc
Q 016903 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAI-STPISDQFRSDGAVVKGRAY 227 (380)
Q Consensus 149 lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~~-~~~~~~~~~~~~~~~~a~a~ 227 (380)
+++|.|+|++ +.++|+.+ =+.|.+=.+-+-.+.++..++||++++...++.. .+++... ..+++-...--
T Consensus 365 vg~AaGlA~~------G~~Pvv~~-~a~Fl~ra~dQi~~~~a~~~lpV~i~~~~~G~~g~dG~tH~~--~~dia~lr~iP 435 (617)
T TIGR00204 365 VTFAAGMAIE------GYKPFVAI-YSTFLQRAYDQVVHDVCIQKLPVLFAIDRAGIVGADGETHQG--AFDISYLRCIP 435 (617)
T ss_pred HHHHHHHHHC------CCEEEEEe-cHHHHHHHHHHHHHHHHhcCCCEEEEEECCCcCCCCCccccc--chHHHHHhcCC
Confidence 4556666542 23444444 4566543333334667889999999998777641 2333222 23333222222
Q ss_pred CceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEE
Q 016903 228 GVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEA 264 (380)
Q Consensus 228 G~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~ 264 (380)
|+.++.-. |+.++...++.|++. .++|++|..
T Consensus 436 gl~V~~Ps--d~~e~~~~l~~a~~~---~~~Pv~ir~ 467 (617)
T TIGR00204 436 NMVIMAPS--DENELRQMLYTGYHY---DDGPIAVRY 467 (617)
T ss_pred CcEEEeeC--CHHHHHHHHHHHHhC---CCCCEEEEE
Confidence 66665544 889999999998853 348998844
No 214
>PRK07092 benzoylformate decarboxylase; Reviewed
Probab=90.94 E-value=1.7 Score=45.60 Aligned_cols=109 Identities=17% Similarity=0.063 Sum_probs=69.4
Q ss_pred hHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCcCHHHHHhhcC
Q 016903 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 228 (380)
Q Consensus 149 lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~~~~~~~~~~~~~~~~~~a~a~G 228 (380)
.-+|.|.|.+. +...++++..|=|.++ ..-++..|..-+.|||+|+-.-.+........+ ...+....++.+-
T Consensus 61 ~~~Adgyar~t---g~~~v~~vt~gpG~~N---~~~gia~A~~~~~Pvl~i~g~~~~~~~~~~~~~-~~~d~~~l~~~~t 133 (530)
T PRK07092 61 VGMADGYAQAT---GNAAFVNLHSAAGVGN---AMGNLFTAFKNHTPLVITAGQQARSILPFEPFL-AAVQAAELPKPYV 133 (530)
T ss_pred HHHHHHHHHHh---CCceEEEeccCchHHH---HHHHHHHHhhcCCCEEEEecCCcccccCccchh-cccCHHHhhcccc
Confidence 34667776543 4445566667888775 446677788889999988864333221110000 1124445565554
Q ss_pred ceEEEEeCCCHHHHHHHHHHHHHHhhccC-CcEEEEEEe
Q 016903 229 VRSIRVDGNDALAIYSAVHAAREMAIGEG-RPILIEALT 266 (380)
Q Consensus 229 ~~~~~VdG~D~~av~~a~~~a~~~ar~~~-gP~lIe~~t 266 (380)
-...+|. +++.+.+.+.+|+..++.+. ||+.|++-.
T Consensus 134 k~~~~v~--~~~~~~~~i~~A~~~A~~~~~GPv~l~iP~ 170 (530)
T PRK07092 134 KWSIEPA--RAEDVPAAIARAYHIAMQPPRGPVFVSIPY 170 (530)
T ss_pred cceeecC--CHHHHHHHHHHHHHHHhcCCCCcEEEEccH
Confidence 4455564 88999999999998887775 799998864
No 215
>PRK06154 hypothetical protein; Provisional
Probab=90.69 E-value=2.1 Score=45.34 Aligned_cols=93 Identities=11% Similarity=0.043 Sum_probs=62.8
Q ss_pred CeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCcCHHHHHhhcCceEEEEeCCCHHHHHHH
Q 016903 166 ACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSA 245 (380)
Q Consensus 166 ~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a 245 (380)
.++++..|=|.++ ..-++..|..-+.|||+|+-........ .....+....++.+--...+|+ +++++.+.
T Consensus 83 gv~~~t~GPG~~N---~~~gla~A~~~~~Pvl~i~G~~~~~~~~----~~~~~d~~~~~~~vtk~~~~v~--~~~~~~~~ 153 (565)
T PRK06154 83 GVFAVQYGPGAEN---AFGGVAQAYGDSVPVLFLPTGYPRGSTD----VAPNFESLRNYRHITKWCEQVT--LPDEVPEL 153 (565)
T ss_pred EEEEECCCccHHH---HHHHHHHHhhcCCCEEEEeCCCCccccc----CCCCcchhhhHhhcceeEEECC--CHHHHHHH
Confidence 3444556888886 4456777888899999998544322110 0011233455666655666677 89999999
Q ss_pred HHHHHHHhhcc-CCcEEEEEEee
Q 016903 246 VHAAREMAIGE-GRPILIEALTY 267 (380)
Q Consensus 246 ~~~a~~~ar~~-~gP~lIe~~t~ 267 (380)
+.+|+..++.+ .||+.|++-..
T Consensus 154 i~~A~~~A~s~~~GPV~l~iP~D 176 (565)
T PRK06154 154 MRRAFTRLRNGRPGPVVLELPVD 176 (565)
T ss_pred HHHHHHHHhcCCCceEEEecchH
Confidence 99999888875 58999988654
No 216
>TIGR00173 menD 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase. 2-oxoglutarate decarboxylase/SHCHC synthase (menD) is a thiamine pyrophosphate enzyme involved in menaquinone biosynthesis.
Probab=90.56 E-value=1 Score=46.02 Aligned_cols=107 Identities=18% Similarity=0.094 Sum_probs=65.1
Q ss_pred HHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCcCHHHHHhhcCc
Q 016903 150 PHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGV 229 (380)
Q Consensus 150 p~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~~~~~~~~~~~~~~~~~~a~a~G~ 229 (380)
-+|-|.|.+ .+.-.++++..|=|.++ ..-++..|-.-+.|||+|+-.-....... ......+..+.++.+--
T Consensus 52 ~mAdgyar~---tg~~gv~~~t~GpG~~N---~l~gl~~A~~~~~Pvl~i~g~~~~~~~~~--~~~q~~d~~~~~~~~tk 123 (432)
T TIGR00173 52 FFALGLAKA---SGRPVAVVCTSGTAVAN---LLPAVIEASYSGVPLIVLTADRPPELRGC--GANQTIDQPGLFGSYVR 123 (432)
T ss_pred HHHHHHHhc---cCCCEEEEECCcchHhh---hhHHHHHhcccCCcEEEEeCCCCHHHhCC--CCCcccchhhHHhhccc
Confidence 356666654 34455677777888886 34567777788899999986433211111 11112345556666654
Q ss_pred eEEEEeCCCHHH------HHHHHHHHHHHhhcc-CCcEEEEEEe
Q 016903 230 RSIRVDGNDALA------IYSAVHAAREMAIGE-GRPILIEALT 266 (380)
Q Consensus 230 ~~~~VdG~D~~a------v~~a~~~a~~~ar~~-~gP~lIe~~t 266 (380)
...+|. ++.. +...+++|+..+..+ .||+.|++-.
T Consensus 124 ~~~~v~--~~~~~~~~~~~~~~i~~A~~~a~~~~~GPV~l~iP~ 165 (432)
T TIGR00173 124 WSLDLP--LPEADEPLAYLRSTVDRAVAQAQGPPPGPVHINVPF 165 (432)
T ss_pred eeeeCC--CCCccccHHHHHHHHHHHHHHhhCCCCCCEEEeCCC
Confidence 555554 3333 667777777766664 4899999864
No 217
>PRK06546 pyruvate dehydrogenase; Provisional
Probab=90.33 E-value=2 Score=45.64 Aligned_cols=108 Identities=18% Similarity=0.030 Sum_probs=66.9
Q ss_pred hHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCcCHHHHHhhcC
Q 016903 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 228 (380)
Q Consensus 149 lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~~~~~~~~~~~~~~~~~~a~a~G 228 (380)
.-+|-|.|.+. +.-.++++..|=|.++ ..-++..|..-+.|||+|.-.-....... ..+...+....++.+-
T Consensus 54 ~~mAdgyar~t---gk~~v~~v~~GpG~~N---~~~gl~~A~~~~~Pvl~I~G~~~~~~~~~--~~~Qe~d~~~l~~~~t 125 (578)
T PRK06546 54 AFAAAAEAQLT---GKLAVCAGSCGPGNLH---LINGLYDAHRSGAPVLAIASHIPSAQIGS--GFFQETHPDRLFVECS 125 (578)
T ss_pred HHHHHhHHHhh---CCceEEEECCCCcHHH---HHHHHHHHHhcCCCEEEEeCCCCccccCC--CCccccChhhhcccce
Confidence 34566665542 2334445556788776 23457778888999999985332211110 0111123345555554
Q ss_pred ceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEe
Q 016903 229 VRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALT 266 (380)
Q Consensus 229 ~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t 266 (380)
-...+|. +++.+...+.+|+..+....||+.|++-.
T Consensus 126 k~~~~v~--~~~~~~~~i~~A~~~A~~~~GPV~l~lP~ 161 (578)
T PRK06546 126 GYCEMVS--SAEQAPRVLHSAIQHAVAGGGVSVVTLPG 161 (578)
T ss_pred eeEeEeC--CHHHHHHHHHHHHHHHhcCCCCEEEEcCh
Confidence 4455666 88889999999998888888999998764
No 218
>TIGR00232 tktlase_bact transketolase, bacterial and yeast. This model is designed to capture orthologs of bacterial transketolases. The group includes two from the yeast Saccharomyces cerevisiae but excludes dihydroxyactetone synthases (formaldehyde transketolases) from various yeasts and the even more distant mammalian transketolases. Among the family of thiamine diphosphate-dependent enzymes that includes transketolases, dihydroxyacetone synthases, pyruvate dehydrogenase E1-beta subunits, and deoxyxylulose-5-phosphate synthases, mammalian and bacterial transketolases seem not to be orthologous.
Probab=89.40 E-value=2.4 Score=45.93 Aligned_cols=80 Identities=18% Similarity=0.169 Sum_probs=54.0
Q ss_pred ccCcchHHHHHHHHHHcCCCEEEEEEcCCccc--ccccccccCCcCHHHHHhhc-CceEEEEeCCCHHHHHHHHHHHHHH
Q 016903 176 GTSEGDFHAALNFSAVTEAPVIFICRNNGWAI--STPISDQFRSDGAVVKGRAY-GVRSIRVDGNDALAIYSAVHAAREM 252 (380)
Q Consensus 176 ~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~~--~~~~~~~~~~~~~~~~a~a~-G~~~~~VdG~D~~av~~a~~~a~~~ 252 (380)
.|.+ -.++++.+++..++||++|....+++. .+++. .+..+++- .++. |+.++.-- |..++..+++.+++.
T Consensus 430 ~F~~-r~~~~ir~~a~~~lpV~~v~th~g~~~G~dG~TH--q~iedia~-lr~iPn~~v~~Pa--D~~E~~~~~~~a~~~ 503 (653)
T TIGR00232 430 MFVD-YARPAIRLAALMKLPVIYVYTHDSIGVGEDGPTH--QPIEQLAS-LRAIPNLSVWRPC--DGNETAAAWKYALES 503 (653)
T ss_pred HHHH-HHHHHHHHHHhcCCCEEEEEeCCccCCCCCCccc--CCHHHHHH-HhcCCCCEEEeeC--CHHHHHHHHHHHHhc
Confidence 5544 567888999999999999998766653 34443 22333332 3333 66666644 888999999988842
Q ss_pred hhccCCcEEEEE
Q 016903 253 AIGEGRPILIEA 264 (380)
Q Consensus 253 ar~~~gP~lIe~ 264 (380)
.++|++|-.
T Consensus 504 ---~~gP~~irl 512 (653)
T TIGR00232 504 ---QDGPTALIL 512 (653)
T ss_pred ---CCCcEEEEE
Confidence 478998854
No 219
>cd01460 vWA_midasin VWA_Midasin: Midasin is a member of the AAA ATPase family. The proteins of this family are unified by their common archetectural organization that is based upon a conserved ATPase domain. The AAA domain of midasin contains six tandem AAA protomers. The AAA domains in midasin is followed by a D/E rich domain that is following by a VWA domain. The members of this subgroup have a conserved MIDAS motif. The function of this domain is not exactly known although it has been speculated to play a crucial role in midasin function.
Probab=89.30 E-value=6 Score=37.97 Aligned_cols=84 Identities=17% Similarity=0.036 Sum_probs=58.2
Q ss_pred eeEEEeCccc--cCcchHHHHHHHHHHcCCCEEEEEEcCC---cccccccc--cccCC-cCHHHHHhhcCceEEEEeCCC
Q 016903 167 CAVTYFGDGG--TSEGDFHAALNFSAVTEAPVIFICRNNG---WAISTPIS--DQFRS-DGAVVKGRAYGVRSIRVDGND 238 (380)
Q Consensus 167 ~vv~~~GDG~--~~eG~~~Eal~~A~~~~Lpvi~vv~NN~---~~~~~~~~--~~~~~-~~~~~~a~a~G~~~~~VdG~D 238 (380)
.++.++.||. +.+|..-..+.-|...++-++||+.+|. -+|.-... ..... ..+......|++|+..|- +|
T Consensus 166 qlilLISDG~~~~~e~~~~~~~r~a~e~~i~l~~I~ld~~~~~~SI~d~~~~~~~~~~~~~l~~Yl~~fpfpYy~~~-~~ 244 (266)
T cd01460 166 QLLLIISDGRGEFSEGAQKVRLREAREQNVFVVFIIIDNPDNKQSILDIKVVSFKNDKSGVITPYLDEFPFPYYVIV-RD 244 (266)
T ss_pred cEEEEEECCCcccCccHHHHHHHHHHHcCCeEEEEEEcCCCCCCCcccccccccCCCCccHHHHHHhcCCCCeEEEe-cC
Confidence 7999999999 8888887778888888996666665543 23321111 00011 146678899999988754 48
Q ss_pred HHHHHHHHHHHHH
Q 016903 239 ALAIYSAVHAARE 251 (380)
Q Consensus 239 ~~av~~a~~~a~~ 251 (380)
+.++..++..++.
T Consensus 245 ~~~lp~~l~~~lr 257 (266)
T cd01460 245 LNQLPSVLSDALR 257 (266)
T ss_pred hhHhHHHHHHHHH
Confidence 8898888887763
No 220
>PLN02683 pyruvate dehydrogenase E1 component subunit beta
Probab=89.25 E-value=3.6 Score=41.12 Aligned_cols=101 Identities=19% Similarity=0.113 Sum_probs=58.3
Q ss_pred cchHHHHHHHHHhhhcCCCCeeEEEe-CccccCcchHHHHHHHHHHcC--------CCEEEEEEcCCcccccccccccCC
Q 016903 147 TQLPHAVGAAYALKMDRKDACAVTYF-GDGGTSEGDFHAALNFSAVTE--------APVIFICRNNGWAISTPISDQFRS 217 (380)
Q Consensus 147 ~~lp~A~G~A~A~k~~~~~~~vv~~~-GDG~~~eG~~~Eal~~A~~~~--------Lpvi~vv~NN~~~~~~~~~~~~~~ 217 (380)
+.++.|.|+|++ | .++++++. .|=. +=.+-+-.+-++.++ +||+|+..+......++++.+
T Consensus 85 ~~vg~AaGlA~~----G-~~P~v~~~~~~f~--~ra~dQi~~dva~~~~~~~g~~~~pV~i~~~~G~~~g~G~tH~~--- 154 (356)
T PLN02683 85 GFTGIGVGAAYA----G-LKPVVEFMTFNFS--MQAIDHIINSAAKTNYMSAGQISVPIVFRGPNGAAAGVGAQHSQ--- 154 (356)
T ss_pred HHHHHHHHHHHC----C-CEEEEEEehhhHH--HHHHHHHHHHHHHhccccCCCccCCEEEEEeCCCCCCCCCcccc---
Confidence 345667777654 2 24444443 3222 112333345666665 999999877332222333322
Q ss_pred cCHHHHHhhc-CceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEE
Q 016903 218 DGAVVKGRAY-GVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEA 264 (380)
Q Consensus 218 ~~~~~~a~a~-G~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~ 264 (380)
.+ ....+++ |+.++.-- |..++...++.+++ .++|++|-.
T Consensus 155 ~~-~a~lr~iPnl~V~~Pa--d~~e~~~~l~~a~~----~~gPv~ir~ 195 (356)
T PLN02683 155 CF-AAWYSSVPGLKVLAPY--SSEDARGLLKAAIR----DPDPVVFLE 195 (356)
T ss_pred CH-HHHHhcCCCCEEEEeC--CHHHHHHHHHHHHh----CCCcEEEEE
Confidence 22 3455554 77777655 88999999998885 368999853
No 221
>PRK11892 pyruvate dehydrogenase subunit beta; Provisional
Probab=88.76 E-value=3.3 Score=42.94 Aligned_cols=99 Identities=19% Similarity=0.158 Sum_probs=60.4
Q ss_pred chHHHHHHHHHhhhcCCCCeeEEEe-CccccCcchHHHHHHHHH--------HcCCCEEEEEEcCCcccccccccccCCc
Q 016903 148 QLPHAVGAAYALKMDRKDACAVTYF-GDGGTSEGDFHAALNFSA--------VTEAPVIFICRNNGWAISTPISDQFRSD 218 (380)
Q Consensus 148 ~lp~A~G~A~A~k~~~~~~~vv~~~-GDG~~~eG~~~Eal~~A~--------~~~Lpvi~vv~NN~~~~~~~~~~~~~~~ 218 (380)
.+++|+|+|++ .-++++.++ .+-.. =.+-+-.|.++ .+++||+|+..|.+.+..++ +.+..
T Consensus 201 ~vg~AaGlA~~-----G~rPiv~~~~~~f~~--ra~dQI~n~~ak~~~~sgg~~~~pVv~~g~~G~~~~~G~---hhs~~ 270 (464)
T PRK11892 201 FAGIGVGAAFA-----GLKPIVEFMTFNFAM--QAIDQIINSAAKTLYMSGGQMGCPIVFRGPNGAAARVAA---QHSQD 270 (464)
T ss_pred HHHHHHHHHhC-----CCEEEEEEehHHHHH--HHHHHHHHHHhHHhhhcCCccCCCEEEEecCCCCCCCCC---ccccC
Confidence 35666777664 234444443 22222 12334456667 88999999988877654333 22233
Q ss_pred CHHHHHhhc-CceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEE
Q 016903 219 GAVVKGRAY-GVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIE 263 (380)
Q Consensus 219 ~~~~~a~a~-G~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe 263 (380)
+ ....+.+ |+.++.-- |+.+.+..++.+++ .++|++|-
T Consensus 271 d-~a~~~~iPgl~V~~P~--d~~d~~~ll~~ai~----~~~Pv~il 309 (464)
T PRK11892 271 Y-AAWYSHIPGLKVVAPY--SAADAKGLLKAAIR----DPNPVIFL 309 (464)
T ss_pred H-HHHHhhCCCCEEEEeC--CHHHHHHHHHHHhh----CCCcEEEE
Confidence 3 3445544 77777644 88889999998885 37899874
No 222
>PRK05444 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=88.39 E-value=2.9 Score=44.54 Aligned_cols=101 Identities=15% Similarity=0.074 Sum_probs=60.7
Q ss_pred hHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHH-HHHHHHHcCCCEEEEEEcCCccc-ccccccccCCcCHHHHHhh
Q 016903 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHA-ALNFSAVTEAPVIFICRNNGWAI-STPISDQFRSDGAVVKGRA 226 (380)
Q Consensus 149 lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~E-al~~A~~~~Lpvi~vv~NN~~~~-~~~~~~~~~~~~~~~~a~a 226 (380)
+++|.|+|+. + .++|+.+ =..|.+ -.++ -.+.++..++||++++...++.. .+++.. ...+++-...-
T Consensus 334 vg~A~GlA~~----G--~~p~~~~-f~~F~~-ra~dQi~~~~a~~~~pv~~v~~~~G~~g~dG~tH~--~~edia~lr~i 403 (580)
T PRK05444 334 VTFAAGLATE----G--LKPVVAI-YSTFLQ-RAYDQVIHDVALQNLPVTFAIDRAGLVGADGPTHQ--GAFDLSYLRCI 403 (580)
T ss_pred HHHHHHHHHC----C--CeeEEEe-eHHHHH-HHHHHHHHHhhhcCCCEEEEEeCCCcCCCCCcccc--ccHHHHHHhcC
Confidence 4556666652 2 3444433 445644 3344 45557889999999998666532 122222 22333333333
Q ss_pred cCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEE
Q 016903 227 YGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEA 264 (380)
Q Consensus 227 ~G~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~ 264 (380)
-|+.++.-- |+.++..+++.|++. .++|++|..
T Consensus 404 P~l~V~~Ps--d~~e~~~~l~~a~~~---~~~P~~ir~ 436 (580)
T PRK05444 404 PNMVIMAPS--DENELRQMLYTALAY---DDGPIAIRY 436 (580)
T ss_pred CCCEEEeeC--CHHHHHHHHHHHHhC---CCCcEEEEe
Confidence 367666654 899999999999853 368998744
No 223
>PRK05899 transketolase; Reviewed
Probab=88.29 E-value=2.8 Score=45.12 Aligned_cols=102 Identities=19% Similarity=0.094 Sum_probs=63.1
Q ss_pred hHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCccc--ccccccccCCcCHHHHHhh
Q 016903 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAI--STPISDQFRSDGAVVKGRA 226 (380)
Q Consensus 149 lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~~--~~~~~~~~~~~~~~~~a~a 226 (380)
+++|.|+|+. +.-+++++.+ ..|. .-.++.+.+++..++|++++....+++. .++++ .+..+++-...-
T Consensus 380 vg~A~GlA~~----G~~~pv~~t~--~~F~-~r~~~qir~~~~~~~pv~~v~~~~G~~~g~~G~tH--q~~edia~~r~i 450 (624)
T PRK05899 380 AAIANGLALH----GGFIPFGGTF--LVFS-DYARNAIRLAALMKLPVIYVFTHDSIGVGEDGPTH--QPVEQLASLRAI 450 (624)
T ss_pred HHHHHHHHHc----CCCeEEEEEc--HHHH-HHHHHHHHHHHhcCCCEEEEEECCCcCcCCCCCCc--ccHHHHHHHHhC
Confidence 4556666543 3233344332 3454 4577888888889999999998877643 34444 222333322222
Q ss_pred cCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEE
Q 016903 227 YGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEA 264 (380)
Q Consensus 227 ~G~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~ 264 (380)
-|+.++.- .|+.++..+++.+++. .++|++|-.
T Consensus 451 P~~~V~~P--~d~~e~~~~l~~a~~~---~~~P~~ir~ 483 (624)
T PRK05899 451 PNLTVIRP--ADANETAAAWKYALER---KDGPSALVL 483 (624)
T ss_pred CCcEEEeC--CCHHHHHHHHHHHHHc---CCCCEEEEE
Confidence 25655553 4889999999998852 369998866
No 224
>PRK12571 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=88.26 E-value=2.9 Score=45.15 Aligned_cols=102 Identities=14% Similarity=0.084 Sum_probs=61.0
Q ss_pred hHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHH-HHHHHcCCCEEEEEEcCCcc-cccccccccCCcCHHHHHhh
Q 016903 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAAL-NFSAVTEAPVIFICRNNGWA-ISTPISDQFRSDGAVVKGRA 226 (380)
Q Consensus 149 lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal-~~A~~~~Lpvi~vv~NN~~~-~~~~~~~~~~~~~~~~~a~a 226 (380)
+++|.|+|++ .-+++++++. .|.+ -.++.+ +.++..++||+|++...++. ..+++... ..+++-...-
T Consensus 374 vg~AaGlA~~-----G~~P~v~~f~--~Fl~-ra~dQI~~~~a~~~lpv~~v~~~~G~~g~dG~THq~--~~dia~lr~i 443 (641)
T PRK12571 374 VTFAAGLAAA-----GLKPFCAVYS--TFLQ-RGYDQLLHDVALQNLPVRFVLDRAGLVGADGATHAG--AFDLAFLTNL 443 (641)
T ss_pred HHHHHHHHHC-----CCEEEEEehH--HHHH-HHHHHHHHHHhhcCCCeEEEEECCCcCCCCCccccc--cHHHHHHhcC
Confidence 4556666642 2344555543 4554 344555 66889999999999766653 22333322 2233322222
Q ss_pred cCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEE
Q 016903 227 YGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEAL 265 (380)
Q Consensus 227 ~G~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~ 265 (380)
-|+.++.-- |..+++.+++.|++. .++|++|-..
T Consensus 444 Pnl~V~~Ps--d~~e~~~~l~~a~~~---~~~P~~ir~~ 477 (641)
T PRK12571 444 PNMTVMAPR--DEAELRHMLRTAAAH---DDGPIAVRFP 477 (641)
T ss_pred CCCEEEeeC--CHHHHHHHHHHHHhC---CCCcEEEEEe
Confidence 266666544 889999999988852 4699998554
No 225
>PTZ00089 transketolase; Provisional
Probab=88.01 E-value=3.6 Score=44.63 Aligned_cols=101 Identities=17% Similarity=0.118 Sum_probs=63.5
Q ss_pred hHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCccc--ccccccccCCcCHHHHHhh
Q 016903 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAI--STPISDQFRSDGAVVKGRA 226 (380)
Q Consensus 149 lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~~--~~~~~~~~~~~~~~~~a~a 226 (380)
+++|.|+|+. +.-+++++.+. .|.+ -.++.+..++..+|||+||+...+++. ++++.. +..+++- .++
T Consensus 416 v~~AaGlA~~----~G~~P~~~tf~--~Fl~-Ra~dqir~~al~~lpV~~v~thdg~~~g~DG~THq--~iedia~-lR~ 485 (661)
T PTZ00089 416 CAIMNGIAAH----GGFIPFGATFL--NFYG-YALGAVRLAALSHHPVIYVATHDSIGLGEDGPTHQ--PVETLAL-LRA 485 (661)
T ss_pred HHHHHHHHHc----CCCeEEEEehH--HHHH-HHHHHHHHHHhcCCCeEEEEeCCceecCCCCCCcc--cHHHHHH-Hhc
Confidence 4456666551 22245555553 6755 677889999999999999997777654 333332 2223322 222
Q ss_pred c-CceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEE
Q 016903 227 Y-GVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEA 264 (380)
Q Consensus 227 ~-G~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~ 264 (380)
+ |+.+++ --|..++..+++.|++. .++|+.|-.
T Consensus 486 iPn~~V~~--PaD~~E~~~~l~~al~~---~~gP~~irl 519 (661)
T PTZ00089 486 TPNLLVIR--PADGTETSGAYALALAN---AKTPTILCL 519 (661)
T ss_pred CCCcEEEe--cCCHHHHHHHHHHHHHc---CCCCEEEEe
Confidence 2 555554 34888998888888742 468998865
No 226
>PLN02234 1-deoxy-D-xylulose-5-phosphate synthase
Probab=87.74 E-value=3.2 Score=44.69 Aligned_cols=99 Identities=14% Similarity=0.172 Sum_probs=57.5
Q ss_pred hHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcc-cccccccccCCcCHHHHHhhc
Q 016903 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWA-ISTPISDQFRSDGAVVKGRAY 227 (380)
Q Consensus 149 lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~-~~~~~~~~~~~~~~~~~a~a~ 227 (380)
+++|.|+|+. + -+++++++ +.|.+-.+-+-.+.++..++||+|++...++. ..++++.+ ..+++ ..+.+
T Consensus 412 Vg~AaGLA~~----G-~rPvv~~f--s~Fl~RA~DQI~~dva~~~lpV~~v~~~aG~~g~dG~TH~~--~~Dia-~lr~i 481 (641)
T PLN02234 412 VTFAAGLACE----G-LKPFCTIY--SSFMQRAYDQVVHDVDLQKLPVRFAIDRAGLMGADGPTHCG--AFDVT-FMACL 481 (641)
T ss_pred HHHHHHHHHC----C-CeEEEEeh--HHHHHHHHHHHHHHHhhcCCCEEEEEeCCccCCCCCccccc--cHHHH-HHhcC
Confidence 4455565542 2 34445543 45544333344467788999999999877653 22333322 12222 22222
Q ss_pred -CceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEE
Q 016903 228 -GVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILI 262 (380)
Q Consensus 228 -G~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lI 262 (380)
|+.++.-- |+.++..+++.|... .++|++|
T Consensus 482 Pnl~V~~Ps--d~~E~~~~l~~a~~~---~~~Pv~i 512 (641)
T PLN02234 482 PNMIVMAPS--DEAELFNMVATAAAI---DDRPSCF 512 (641)
T ss_pred CCCEEEeeC--CHHHHHHHHHHHHhC---CCCCEEE
Confidence 66666544 888999988887753 4589988
No 227
>TIGR03336 IOR_alpha indolepyruvate ferredoxin oxidoreductase, alpha subunit. Indolepyruvate ferredoxin oxidoreductase (IOR) is an alpha 2/beta 2 tetramer related to ketoacid oxidoreductases for pyruvate (1.2.7.1, POR), 2-ketoglutarate (1.2.7.3, KOR), and 2-oxoisovalerate (1.2.7.7, VOR). These multi-subunit enzymes typically are found in anaerobes and are inactiviated by oxygen. IOR in Pyrococcus acts in fermentation of all three aromatic amino acids, following removal of the amino group by transamination. In Methanococcus maripaludis, by contrast, IOR acts in the opposite direction, in pathways of amino acid biosynthesis from phenylacetate, indoleacetate, and p-hydroxyphenylacetate. In M. maripaludis and many other species, iorA and iorB are found next to an apparent phenylacetate-CoA ligase.
Probab=87.68 E-value=3.5 Score=44.06 Aligned_cols=109 Identities=18% Similarity=0.147 Sum_probs=67.8
Q ss_pred hHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHc--CCCEEEEEEcCCcccccccccccCCcCHHHHHhh
Q 016903 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVT--EAPVIFICRNNGWAISTPISDQFRSDGAVVKGRA 226 (380)
Q Consensus 149 lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~--~Lpvi~vv~NN~~~~~~~~~~~~~~~~~~~~a~a 226 (380)
+.+++|+++| +.++++.+-=.+++ ...|.|..++.. .+|+|+++-|..-..++ +....|.. .++.
T Consensus 59 ~~~~~GAs~a------G~ra~t~ts~~Gl~--~~~e~l~~~~~~g~~~~iV~~~~~~~gp~~~----~~~q~d~~-~~~~ 125 (595)
T TIGR03336 59 VEVAAGAAWS------GLRAFCTMKHVGLN--VAADPLMTLAYTGVKGGLVVVVADDPSMHSS----QNEQDTRH-YAKF 125 (595)
T ss_pred HHHHHHHHhc------CcceEEEccCCchh--hhHHHhhhhhhhcCcCceEEEEccCCCCccc----hhhHhHHH-HHHh
Confidence 5678888876 23444444333332 345667666644 45777777654211111 11112222 3445
Q ss_pred cCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCCCCCC
Q 016903 227 YGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTT 274 (380)
Q Consensus 227 ~G~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t~R~~gHs~ 274 (380)
.+|+++... |+.++++...+|++.+++.+-|++|-..+ + -+|+.
T Consensus 126 ~~~~vl~p~--~~qE~~d~~~~Af~lae~~~~PV~v~~d~-~-l~h~~ 169 (595)
T TIGR03336 126 AKIPCLEPS--TPQEAKDMVKYAFELSEKFGLPVILRPTT-R-ISHMR 169 (595)
T ss_pred cCCeEECCC--CHHHHHHHHHHHHHHHHHHCCCEEEEEee-e-eccce
Confidence 688866554 89999999999999999999999998875 3 45654
No 228
>PLN02582 1-deoxy-D-xylulose-5-phosphate synthase
Probab=86.52 E-value=4.7 Score=43.82 Aligned_cols=102 Identities=13% Similarity=0.138 Sum_probs=59.9
Q ss_pred hHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCccc-ccccccccCCcCHHHHHhhc
Q 016903 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAI-STPISDQFRSDGAVVKGRAY 227 (380)
Q Consensus 149 lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~~-~~~~~~~~~~~~~~~~a~a~ 227 (380)
+++|.|+|+. + -+++++++ ..|.+=.+-+-.+-++..++||+|++...++.. .+++... ..|++-...--
T Consensus 411 vg~AaGLA~~----G-~kPvv~~f--s~Fl~RA~DQI~~dval~~lpVv~v~~~aG~vg~dG~TH~~--~~Dia~lr~iP 481 (677)
T PLN02582 411 VTFAAGLACE----G-LKPFCAIY--SSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCG--AFDVTYMACLP 481 (677)
T ss_pred HHHHHHHHHC----C-CeEEEEec--HHHHHHHHHHHHHHHHhcCCCEEEEEECCCcccCCCCcccc--cHHHHHHhcCC
Confidence 4455555542 2 35555554 355442233455777889999999998776532 2333322 12222222222
Q ss_pred CceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEE
Q 016903 228 GVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEA 264 (380)
Q Consensus 228 G~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~ 264 (380)
|+.++.-- |..+++..++.|+.. .++|++|..
T Consensus 482 nl~V~~Ps--d~~E~~~~l~~al~~---~~gPv~IR~ 513 (677)
T PLN02582 482 NMVVMAPS--DEAELFHMVATAAAI---DDRPSCFRY 513 (677)
T ss_pred CCEEEeeC--CHHHHHHHHHHHHhC---CCCCEEEEE
Confidence 66666544 888999999988853 458998854
No 229
>PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding
Probab=86.37 E-value=2.7 Score=50.30 Aligned_cols=107 Identities=14% Similarity=0.102 Sum_probs=69.4
Q ss_pred hHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCcCHHHHHhhcC
Q 016903 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 228 (380)
Q Consensus 149 lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~~~~~~~~~~~~~~~~~~a~a~G 228 (380)
.-+|.|.|.+. +...+++|..|=|.++ ..-++..|..-+.|||+|.-+-......... ....|....++.+-
T Consensus 352 afmAdGyAR~T---gkpgV~i~TsGPG~tN---~l~av~eA~~d~vPlLvItgd~p~~~~~~ga--~Q~iDq~~lf~pvt 423 (1655)
T PLN02980 352 AFHALGYARGS---LKPAVVITSSGTAVSN---LLPAVVEASQDFVPLLLLTADRPPELQDAGA--NQAINQVNHFGSFV 423 (1655)
T ss_pred HHHHHHHHHHh---CCCEEEEEeCcHHHHH---HHHHHHHHhhcCCCEEEEeCCCCHHHhcCCC--CcccchhhHHHhhh
Confidence 34677777653 4556677777888886 5667888888999999999765432211111 11134455666665
Q ss_pred ceEEEEeCCCHHH------HHHHHHHHHHHhhcc-CCcEEEEEE
Q 016903 229 VRSIRVDGNDALA------IYSAVHAAREMAIGE-GRPILIEAL 265 (380)
Q Consensus 229 ~~~~~VdG~D~~a------v~~a~~~a~~~ar~~-~gP~lIe~~ 265 (380)
-...+|. ++.. +..++++|+..++.+ .||+.|++-
T Consensus 424 K~s~~v~--~p~~~~~~~~l~~~v~~A~~~A~s~rpGPVhL~iP 465 (1655)
T PLN02980 424 RFFFNLP--PPTDLIPARMVLTTLDSAVHWATSSPCGPVHINCP 465 (1655)
T ss_pred heeecCC--CccchhhHHHHHHHHHHHHHHHhCCCCCCEEEECc
Confidence 5555553 4433 356778888777776 499999997
No 230
>COG0674 PorA Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit [Energy production and conversion]
Probab=86.35 E-value=4.9 Score=40.32 Aligned_cols=111 Identities=16% Similarity=0.187 Sum_probs=75.8
Q ss_pred cchHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcccccc-cccccCCcCHHHHHh
Q 016903 147 TQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTP-ISDQFRSDGAVVKGR 225 (380)
Q Consensus 147 ~~lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~~~~~-~~~~~~~~~~~~~a~ 225 (380)
+.++.++|++++- .+..-...|.|-. ..+|.+-+|+-..+|+|+++.+........ +.. ...|+... +
T Consensus 58 ~a~s~v~GA~~aG-----ar~~TaTSg~Gl~---Lm~E~l~~a~~~~~P~Vi~~~~R~~ps~g~p~~~--dq~D~~~~-r 126 (365)
T COG0674 58 GAISAVIGASYAG-----ARAFTATSGQGLL---LMAEALGLAAGTETPLVIVVAQRPLPSTGLPIKG--DQSDLMAA-R 126 (365)
T ss_pred HHHHHHHHHHhhC-----cceEeecCCccHH---HHHHHHHHHHhccCCeEEEEeccCcCCCcccccc--cHHHHHHH-H
Confidence 3478888888873 3444555566655 368999999999999999998877544332 111 11233221 1
Q ss_pred hcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCC
Q 016903 226 AYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVG 270 (380)
Q Consensus 226 a~G~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t~R~~ 270 (380)
.-||+.+... |+.+.+...-.|...|.+..-|+++-..-++..
T Consensus 127 ~~g~~~~~~~--s~qEa~d~t~~Af~iAe~~~~Pvi~~~D~~~~~ 169 (365)
T COG0674 127 DTGFPILVSA--SVQEAFDLTLLAFNIAEKVLTPVIVLLDGFLAS 169 (365)
T ss_pred ccCceEEeec--cHHHHHHHHHHHHHHHHHhcCCEEEeeccchhc
Confidence 2288888777 888888888888888777788999987776643
No 231
>PLN02225 1-deoxy-D-xylulose-5-phosphate synthase
Probab=86.23 E-value=4.9 Score=43.71 Aligned_cols=102 Identities=10% Similarity=0.063 Sum_probs=60.6
Q ss_pred hHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCccc-ccccccccCCcCHHHHHhhc
Q 016903 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAI-STPISDQFRSDGAVVKGRAY 227 (380)
Q Consensus 149 lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~~-~~~~~~~~~~~~~~~~a~a~ 227 (380)
++.|.|+|.. .-++++++. ..|.+=.+-+-.+-++..++||+|++..-++.. .+++.. ...|++-...--
T Consensus 436 Vt~AAGLA~~-----G~kPvv~iy--stFlqRAyDQI~~Dval~~lpV~~vid~aGlvg~DG~TH~--g~~Dia~lr~IP 506 (701)
T PLN02225 436 VTFSAGLSSG-----GLKPFCIIP--SAFLQRAYDQVVHDVDRQRKAVRFVITSAGLVGSDGPVQC--GAFDIAFMSSLP 506 (701)
T ss_pred HHHHHHHHHC-----CCEEEEEee--hhHHHHHHHHHHHHHHhhcCCceEEEECCccCCCCCcccc--ccHHHHHHhcCC
Confidence 4455565542 346677777 467553344445557889999999998755432 222222 223333222222
Q ss_pred CceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEE
Q 016903 228 GVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEA 264 (380)
Q Consensus 228 G~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~ 264 (380)
|+.++.-. |..++...++.|... .++|++|-.
T Consensus 507 nm~V~aPs--D~~El~~mL~~A~~~---~~gPv~IR~ 538 (701)
T PLN02225 507 NMIAMAPA--DEDELVNMVATAAYV---TDRPVCFRF 538 (701)
T ss_pred CCEEEeeC--CHHHHHHHHHHHHhc---CCCCEEEEe
Confidence 66655544 889999999887742 468999854
No 232
>PRK12315 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=85.31 E-value=5.8 Score=42.37 Aligned_cols=101 Identities=9% Similarity=-0.005 Sum_probs=60.0
Q ss_pred hHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCcCHHHHHhhc-
Q 016903 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAY- 227 (380)
Q Consensus 149 lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~~~~~~~~~~~~~~~~~~a~a~- 227 (380)
+++|.|+|+. + -+++++.+.+ |.+-.+-+-.+-++..++||+|++..-++...+++... ..|++ ..+.+
T Consensus 333 v~~AaGlA~~----G-~~Pvv~~fs~--Fl~ra~dQi~~d~a~~~lpv~~~~~~~g~~~dG~TH~~--~~Dia-~lr~iP 402 (581)
T PRK12315 333 VAFASGIAAN----G-ARPVIFVNST--FLQRAYDQLSHDLAINNNPAVMIVFGGSISGNDVTHLG--IFDIP-MISNIP 402 (581)
T ss_pred HHHHHHHHHC----c-CeEEEEeeHH--HHHHHHHHHHHHHHhcCCCEEEEEECCcccCCCccccc--cHHHH-HHhcCC
Confidence 4556666542 3 3455555543 43322333445578889999999987666544444432 22332 22322
Q ss_pred CceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEE
Q 016903 228 GVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEA 264 (380)
Q Consensus 228 G~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~ 264 (380)
|+.++. -.|..++..+++.|++. .++|++|-.
T Consensus 403 nl~V~~--P~d~~e~~~~l~~a~~~---~~gP~~ir~ 434 (581)
T PRK12315 403 NLVYLA--PTTKEELIAMLEWALTQ---HEHPVAIRV 434 (581)
T ss_pred CCEEEe--cCCHHHHHHHHHHHHhC---CCCcEEEEE
Confidence 555554 34888999999888752 368998855
No 233
>COG0021 TktA Transketolase [Carbohydrate transport and metabolism]
Probab=84.52 E-value=3.4 Score=44.02 Aligned_cols=79 Identities=16% Similarity=0.145 Sum_probs=55.6
Q ss_pred HHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCcCHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEE
Q 016903 182 FHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPIL 261 (380)
Q Consensus 182 ~~Eal~~A~~~~Lpvi~vv~NN~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~l 261 (380)
..-++.+|+..++|++||..-..++.........+.+.++.+=.-.++.+++=- |..+...+.+.|+++ .++|++
T Consensus 441 ~r~AiRlaALm~l~~~~V~THDSIgvGEDGPTHqPiEqLa~LRaiPN~~V~RPa--D~~Et~~aw~~Al~~---~~gPt~ 515 (663)
T COG0021 441 ARPAVRLAALMGLPVIYVFTHDSIGVGEDGPTHQPVEQLASLRAIPNLSVIRPA--DANETAAAWKYALER---KDGPTA 515 (663)
T ss_pred hhHHHHHHHhcCCCeEEEEecCceecCCCCCCCCcHHHHHHhhccCCceeEecC--ChHHHHHHHHHHHhc---CCCCeE
Confidence 446799999999999999999988765333223334444444444588888833 555777888888874 689998
Q ss_pred EEEE
Q 016903 262 IEAL 265 (380)
Q Consensus 262 Ie~~ 265 (380)
|...
T Consensus 516 Lilt 519 (663)
T COG0021 516 LILT 519 (663)
T ss_pred EEEe
Confidence 8753
No 234
>COG4032 Predicted thiamine-pyrophosphate-binding protein [General function prediction only]
Probab=84.02 E-value=4.3 Score=35.18 Aligned_cols=107 Identities=13% Similarity=0.087 Sum_probs=67.2
Q ss_pred cchHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHH-HHHHcCCCEEEEEEcCCcccccccccccC-CcCHHHHH
Q 016903 147 TQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALN-FSAVTEAPVIFICRNNGWAISTPISDQFR-SDGAVVKG 224 (380)
Q Consensus 147 ~~lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~-~A~~~~Lpvi~vv~NN~~~~~~~~~~~~~-~~~~~~~a 224 (380)
-+++++.|+.+|- ++..+.+-- .++. -...+|. +-..+++|++.++.-.++-...- ..|.+ +.-+.++.
T Consensus 53 eg~GIcAGa~lAG-----kk~ailmQn-sGlG--NsiNal~SL~~ty~iPl~ml~ShRG~~~E~i-~AQVpmGr~~~kiL 123 (172)
T COG4032 53 EGVGICAGAYLAG-----KKPAILMQN-SGLG--NSINALASLYVTYKIPLLMLASHRGVLKEGI-EAQVPMGRALPKIL 123 (172)
T ss_pred cceeeehhhhhcC-----CCcEEEEec-cCcc--hHHHHHHHHHHHhccchhhhhhccchhhcCC-ccccccchhhHHHH
Confidence 3467788888873 233333332 2221 1222222 23458899999888776533221 12222 23456788
Q ss_pred hhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEE
Q 016903 225 RAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEA 264 (380)
Q Consensus 225 ~a~G~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~ 264 (380)
+..++|.+++- .+++-+..+..+...+-+..+|+.+-+
T Consensus 124 e~~~lpt~t~~--~p~Ea~~li~~~~~~a~~~s~pv~vll 161 (172)
T COG4032 124 EGLELPTYTII--GPEEALPLIENAILDAFENSRPVAVLL 161 (172)
T ss_pred hhcCCcccccC--CHHHHHHHHHHHHHHHHHcCCceEEEe
Confidence 99999999988 678888888888888888889987654
No 235
>PRK12753 transketolase; Reviewed
Probab=84.01 E-value=6.6 Score=42.60 Aligned_cols=103 Identities=16% Similarity=0.011 Sum_probs=63.7
Q ss_pred hHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCcCHHHHHhhc-
Q 016903 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAY- 227 (380)
Q Consensus 149 lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~~~~~~~~~~~~~~~~~~a~a~- 227 (380)
+++|.|+|+- +.-.++++.+ +.|.+ -.++.+.+++..++||+||....+++.........+..+++- .++.
T Consensus 415 v~~aaGlA~~----~G~~P~~~tf--~~F~~-r~~~qir~~a~~~l~V~~v~thdg~~~G~DG~THq~iedla~-lR~iP 486 (663)
T PRK12753 415 TAIANGIAHH----GGFVPYTATF--LMFVE-YARNAARMAALMKARQIMVYTHDSIGLGEDGPTHQPVEQLAS-LRLTP 486 (663)
T ss_pred HHHHHHHHHh----CCCeEEEEeh--HHHHH-HHHHHHHHHHhcCCCeEEEEeCCCcccCCCCcccccHHHHHH-HhcCC
Confidence 4566666651 1223444444 36655 678899999999999999998888765322222222233322 2322
Q ss_pred CceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEE
Q 016903 228 GVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEA 264 (380)
Q Consensus 228 G~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~ 264 (380)
|+.+++-- |..++..+++.|++. .++|+.|-.
T Consensus 487 n~~v~~Pa--D~~E~~~~~~~al~~---~~gP~~irl 518 (663)
T PRK12753 487 NFSTWRPC--DQVEAAVAWKLAIER---HNGPTALIL 518 (663)
T ss_pred CCEEEccC--CHHHHHHHHHHHHhc---CCCCEEEEe
Confidence 55555533 788888888888852 478988755
No 236
>PTZ00182 3-methyl-2-oxobutanate dehydrogenase; Provisional
Probab=83.71 E-value=9.2 Score=38.25 Aligned_cols=98 Identities=17% Similarity=0.160 Sum_probs=56.1
Q ss_pred hHHHHHHHHHhhhcCCCCeeEEE-eCccccCcchHHHHHHHHHH--------cCCCEEEEEEcCCcccccccccccCCcC
Q 016903 149 LPHAVGAAYALKMDRKDACAVTY-FGDGGTSEGDFHAALNFSAV--------TEAPVIFICRNNGWAISTPISDQFRSDG 219 (380)
Q Consensus 149 lp~A~G~A~A~k~~~~~~~vv~~-~GDG~~~eG~~~Eal~~A~~--------~~Lpvi~vv~NN~~~~~~~~~~~~~~~~ 219 (380)
+++|.|+|++ + .++++++ +.| |.+-.+-+-.+-++. +++|+|++.....++..++++.+ .
T Consensus 95 vg~AaGlA~~----G-~~Pvv~~~fa~--Fl~ra~dQi~~d~a~~~~~~~g~~~v~vv~~~~~g~~g~~G~tHs~----~ 163 (355)
T PTZ00182 95 AGFAIGAAMN----G-LRPIAEFMFAD--FIFPAFDQIVNEAAKYRYMSGGQFDCPIVIRGPNGAVGHGGAYHSQ----S 163 (355)
T ss_pred HHHHHHHHhC----C-CEEEEEechhh--HHHHHHHHHHHHHHHhhcccCCCccCCEEEEeCCCCCCCCCCcccc----h
Confidence 5566777653 2 2344443 343 322223333344554 35678777655555555555433 1
Q ss_pred HHHHHhhc-CceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEE
Q 016903 220 AVVKGRAY-GVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIE 263 (380)
Q Consensus 220 ~~~~a~a~-G~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe 263 (380)
+....+++ |+.++.-- |+.+++.+++.+++ .++|++|-
T Consensus 164 ~ea~lr~iPn~~V~~Ps--d~~e~~~~l~~a~~----~~~P~~i~ 202 (355)
T PTZ00182 164 FEAYFAHVPGLKVVAPS--DPEDAKGLLKAAIR----DPNPVVFF 202 (355)
T ss_pred HHHHHhcCCCCEEEeeC--CHHHHHHHHHHHHh----CCCcEEEE
Confidence 22445544 67666654 88899999999886 37899773
No 237
>PLN02790 transketolase
Probab=83.58 E-value=7.4 Score=42.17 Aligned_cols=74 Identities=20% Similarity=0.259 Sum_probs=49.9
Q ss_pred hHHHHHHHHHHcCCCEEEEEEcCCccc--ccccccccCCcCHHHHHhhc---CceEEEEeCCCHHHHHHHHHHHHHHhhc
Q 016903 181 DFHAALNFSAVTEAPVIFICRNNGWAI--STPISDQFRSDGAVVKGRAY---GVRSIRVDGNDALAIYSAVHAAREMAIG 255 (380)
Q Consensus 181 ~~~Eal~~A~~~~Lpvi~vv~NN~~~~--~~~~~~~~~~~~~~~~a~a~---G~~~~~VdG~D~~av~~a~~~a~~~ar~ 255 (380)
...+++.+++..+|||+||+...+.+. ++++.. .+.+++--- ++.+++ --|..++..+++.|++.
T Consensus 431 ~~~~~ir~~al~~lpV~~v~thdg~~~G~DG~THq-----~iedla~lR~iPnl~V~~--PaD~~E~~~~l~~al~~--- 500 (654)
T PLN02790 431 YMRAAMRLSALSEAGVIYVMTHDSIGLGEDGPTHQ-----PIEHLASLRAMPNILMLR--PADGNETAGAYKVAVTN--- 500 (654)
T ss_pred HHHHHHHHHHhcCCCeEEEEECCceeecCCCCCcc-----cHHHHHHhcCCCCcEEEe--CCCHHHHHHHHHHHHHc---
Confidence 456788889999999999998777653 333332 244444333 444444 34888888888888752
Q ss_pred cCCcEEEEE
Q 016903 256 EGRPILIEA 264 (380)
Q Consensus 256 ~~gP~lIe~ 264 (380)
.++|+.|-.
T Consensus 501 ~~gP~~irl 509 (654)
T PLN02790 501 RKRPTVLAL 509 (654)
T ss_pred CCCCEEEEe
Confidence 468988854
No 238
>PRK09212 pyruvate dehydrogenase subunit beta; Validated
Probab=83.34 E-value=10 Score=37.35 Aligned_cols=66 Identities=14% Similarity=0.101 Sum_probs=42.0
Q ss_pred CCCEEEEEEcCCcccccccccccCCcCHHHHHhhc-CceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeec
Q 016903 193 EAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAY-GVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 268 (380)
Q Consensus 193 ~Lpvi~vv~NN~~~~~~~~~~~~~~~~~~~~a~a~-G~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t~R 268 (380)
++|+++...+-.++..++++.+. +....++. |+.++.- .|+.++...++.|++ .++|++|-..-.|
T Consensus 110 ~v~vv~~~~~g~~~~~G~tH~~~----~ea~~r~iP~l~V~~P--~d~~e~~~~l~~a~~----~~~Pv~i~~~~~~ 176 (327)
T PRK09212 110 KCPIVFRGPNGAAARVAAQHSQC----YAAWYSHIPGLKVVAP--YFAADCKGLLKTAIR----DPNPVIFLENEIL 176 (327)
T ss_pred CccEEEEeCCCCCCCCCcccccC----HHHHHhcCCCCEEEee--CCHHHHHHHHHHHHh----CCCcEEEEEchhh
Confidence 57888887665555555544222 22444444 6666654 488999999998885 3789988444333
No 239
>PRK12754 transketolase; Reviewed
Probab=80.88 E-value=10 Score=41.20 Aligned_cols=104 Identities=12% Similarity=0.005 Sum_probs=62.9
Q ss_pred hHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCcCHHHHHhhcC
Q 016903 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 228 (380)
Q Consensus 149 lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~~~~~~~~~~~~~~~~~~a~a~G 228 (380)
+++|.|+|+- +.-.+.++.+ ..|.. -.++++.+++..+|||++|....+++.........+..+++-.-.--|
T Consensus 415 v~iaaGlA~~----~G~~Pf~~tf--~~F~~-r~~~qir~~a~~~l~V~~v~th~gi~~G~DG~THq~iEdla~lR~iPn 487 (663)
T PRK12754 415 TAIANGIALH----GGFLPYTSTF--LMFVE-YARNAVRMAALMKQRQVMVYTHDSIGLGEDGPTHQPVEQVASLRVTPN 487 (663)
T ss_pred HHHHhhHHhc----CCCeEEEEee--HHHHH-HHHHHHHHHHHcCCCeEEEEECCccccCCCCCCcccHHHHHHHhcCCC
Confidence 4556666652 1122333333 35554 678899999999999999998888765432222222333332222225
Q ss_pred ceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEE
Q 016903 229 VRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEA 264 (380)
Q Consensus 229 ~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~ 264 (380)
+.+++- -|..++..+++.++++ .++|+.|-.
T Consensus 488 ~~V~~P--aD~~E~~~~~~~a~~~---~~gP~yirl 518 (663)
T PRK12754 488 MSTWRP--CDQVESAVAWKYGVER---QDGPTALIL 518 (663)
T ss_pred cEEecC--CCHHHHHHHHHHHHhC---CCCCEEEEe
Confidence 555553 4888888888888863 468997654
No 240
>TIGR03393 indolpyr_decarb indolepyruvate decarboxylase, Erwinia family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. Within the larger family, this model represents a clade of bacterial indolepyruvate decarboxylases, part of a pathway for biosynthesis of the plant hormone indole-3-acetic acid. Typically, these species interact with plants, as pathogens or as beneficial, root-associated bacteria.
Probab=78.77 E-value=14 Score=38.86 Aligned_cols=109 Identities=20% Similarity=0.106 Sum_probs=59.0
Q ss_pred chHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcccc---ccccccc---CCcCHH
Q 016903 148 QLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAIS---TPISDQF---RSDGAV 221 (380)
Q Consensus 148 ~lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~~~---~~~~~~~---~~~~~~ 221 (380)
..-+|-|.|.+. + ..++++..|=|.++ ..-++..|..-+.|||+|+-.-..... ...+... ...++.
T Consensus 51 A~~mAdgyar~t---g-~gv~~~t~GPG~~n---~~~gla~A~~d~~Pvl~I~G~~~~~~~~~~~~~~~~~~~~~~q~~~ 123 (539)
T TIGR03393 51 AAYAADGYARCK---G-AAALLTTFGVGELS---AINGIAGSYAEHLPVIHIVGAPGTAAQQRGELLHHTLGDGDFRHFY 123 (539)
T ss_pred HHHHhhhhhhhc---C-ceEEEEecCccHHH---HhhHHHHHhhccCCEEEEECCCCcchhhcCceeeeecCCCchHHHH
Confidence 345666776654 3 24666677999886 334577788889999999964332100 0000000 111223
Q ss_pred HHHhhcCceEEEEeCCC-HHHHHHHHHHHHHHhhccCCcEEEEEEee
Q 016903 222 VKGRAYGVRSIRVDGND-ALAIYSAVHAAREMAIGEGRPILIEALTY 267 (380)
Q Consensus 222 ~~a~a~G~~~~~VdG~D-~~av~~a~~~a~~~ar~~~gP~lIe~~t~ 267 (380)
+.++..-.....++..+ +..+.++++.|+. ..||+.|++-..
T Consensus 124 ~~~~~itk~~~~~~~~~~~~~i~~a~~~A~~----~~gPv~l~iP~D 166 (539)
T TIGR03393 124 RMAAEVTVAQAVLTEQNATAEIDRVITTALR----ERRPGYLMLPVD 166 (539)
T ss_pred HHhhceEEEEEEeChhhhHHHHHHHHHHHHh----cCCCEEEEeccc
Confidence 33333322223333334 4556666666653 578999998654
No 241
>CHL00144 odpB pyruvate dehydrogenase E1 component beta subunit; Validated
Probab=77.85 E-value=20 Score=35.46 Aligned_cols=61 Identities=8% Similarity=0.051 Sum_probs=37.1
Q ss_pred CCCEEEEEEcCCcccccccccccCCcCHHHHHhhc-CceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEE
Q 016903 193 EAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAY-GVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIE 263 (380)
Q Consensus 193 ~Lpvi~vv~NN~~~~~~~~~~~~~~~~~~~~a~a~-G~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe 263 (380)
++|++++.-.-.+...++++.+ .+....+.+ |+.++.-. |+.+.+..++.|++ .++|++|-
T Consensus 110 ~~~vv~~~~g~~~~~~G~tHs~----~~ea~~~~iPgl~V~~Ps--d~~d~~~~l~~a~~----~~~Pv~ir 171 (327)
T CHL00144 110 TIPIVIRGPGGVGRQLGAEHSQ----RLESYFQSVPGLQIVACS--TPYNAKGLLKSAIR----SNNPVIFF 171 (327)
T ss_pred cCCEEEEecCCCCCCCCccccc----cHHHHHhcCCCCEEEEeC--CHHHHHHHHHHHHh----CCCcEEEE
Confidence 6788887432222223333222 233445544 66666654 88899999988875 47899884
No 242
>COG3958 Transketolase, C-terminal subunit [Carbohydrate transport and metabolism]
Probab=77.68 E-value=12 Score=36.24 Aligned_cols=103 Identities=14% Similarity=0.080 Sum_probs=61.6
Q ss_pred chHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHH-HHcCCCEEEEEEcCCcccccccccccCCcCHHHHHhh
Q 016903 148 QLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFS-AVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRA 226 (380)
Q Consensus 148 ~lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A-~~~~Lpvi~vv~NN~~~~~~~~~~~~~~~~~~~~a~a 226 (380)
.++.|.|.|++- ..+.++ +=+.|..+-.||=+..+ +..+|||-+|+.+-++......... ..+.+.|-.
T Consensus 61 mvg~AAGLA~~G-----k~Pfv~--tfa~F~s~Ra~EQir~~iay~~lnVKiv~t~~G~t~g~dG~sH---q~~EDiaim 130 (312)
T COG3958 61 MVGTAAGLALAG-----KKPFVS--TFAAFLSRRAWEQIRNSIAYNNLNVKIVATHAGVTYGEDGSSH---QALEDIAIM 130 (312)
T ss_pred HHHHHHHHHhcC-----CCceee--chHHHHHHHHHHHHHHHhhhccCCeEEEEecCCcccCCCCccc---hhHHHHHHH
Confidence 356777777653 233444 44677777778777665 4567899999999886543221111 224455544
Q ss_pred cCceEEE-EeCCCHHHHHHHHHHHHHHhhccCCcEEEEE
Q 016903 227 YGVRSIR-VDGNDALAIYSAVHAAREMAIGEGRPILIEA 264 (380)
Q Consensus 227 ~G~~~~~-VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~ 264 (380)
-|+|-.. +.-.|..+..+++..+.+ .+||+-+-.
T Consensus 131 R~lpn~~V~~P~D~v~~~~i~~~~~~----~~GP~Y~Rl 165 (312)
T COG3958 131 RGLPNMTVIAPADAVETRAILDQIAD----YKGPVYMRL 165 (312)
T ss_pred hcCCCceEEccCcHHHHHHHHHHHHh----cCCCEEEEe
Confidence 4554333 334466666666666665 489987743
No 243
>smart00861 Transket_pyr Transketolase, pyrimidine binding domain. Transketolase (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Hansenula polymorpha, there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates.
Probab=73.85 E-value=30 Score=30.17 Aligned_cols=100 Identities=18% Similarity=0.194 Sum_probs=56.2
Q ss_pred hHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcC-CCEEEEEEc-CCcccccccccccCCcCHHHHHhh
Q 016903 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTE-APVIFICRN-NGWAISTPISDQFRSDGAVVKGRA 226 (380)
Q Consensus 149 lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~-Lpvi~vv~N-N~~~~~~~~~~~~~~~~~~~~a~a 226 (380)
+++|.|+|+. +. ++++++... |.. ...+.+.+...++ +|+|+.... ..++..+++... ..+++ ..+.
T Consensus 62 vg~a~GlA~~----G~-~pi~~~~~~--f~~-~a~~~~~~~~~~~~~~~v~~~~~g~~~g~~G~tH~~--~~~~~-~~~~ 130 (168)
T smart00861 62 VGFAAGLALA----GL-RPVVAIFFT--FFD-RAKDQIRSDGAMGRVPVVVRHDSGGGVGEDGPTHHS--QEDEA-LLRA 130 (168)
T ss_pred HHHHHHHHHc----CC-CcEEEeeHH--HHH-HHHHHHHHhCcccCCCEEEEecCccccCCCCccccc--hhHHH-HHhc
Confidence 4456666554 33 555555533 222 3566777777776 666666643 444444443322 12222 2222
Q ss_pred c-CceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEE
Q 016903 227 Y-GVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEA 264 (380)
Q Consensus 227 ~-G~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~ 264 (380)
+ |+.++. -.|+.++...++.+++ ..++|++|-.
T Consensus 131 iP~~~v~~--P~~~~e~~~~l~~a~~---~~~~p~~i~~ 164 (168)
T smart00861 131 IPGLKVVA--PSDPAEAKGLLRAAIR---RDDGPPVIRL 164 (168)
T ss_pred CCCcEEEe--cCCHHHHHHHHHHHHh---CCCCCEEEEe
Confidence 2 444444 4589999999999984 2568977643
No 244
>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]
Probab=69.92 E-value=7.4 Score=41.06 Aligned_cols=54 Identities=20% Similarity=0.248 Sum_probs=39.5
Q ss_pred hHHHHHHHHHHc--CCCEEEEEEcCCcccccccccccCCcCHHHHHhhcCceEEEEeCCCHHHHH
Q 016903 181 DFHAALNFSAVT--EAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIY 243 (380)
Q Consensus 181 ~~~Eal~~A~~~--~Lpvi~vv~NN~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~VdG~D~~av~ 243 (380)
....+|.-+.++ |||++++++|.+-.-++ +-.+.++.||++++.||+|.+.+..
T Consensus 403 Dl~~aLED~~RhGqKlPL~VlvDnGsTeEDi---------pA~~~~k~Ygi~ivVVDHH~Pde~v 458 (715)
T COG1107 403 DLNFALEDAHRHGQKLPLLVLVDNGSTEEDI---------PAIKQLKAYGIDIVVVDHHYPDEAV 458 (715)
T ss_pred hHHHHHHHHHhcCCccceEEEEcCCCccccc---------HHHHHHHhcCCCEEEEcCCCCcchh
Confidence 345567777776 58999999886432222 2347899999999999999887654
No 245
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=68.16 E-value=14 Score=30.48 Aligned_cols=47 Identities=23% Similarity=0.275 Sum_probs=29.3
Q ss_pred CcCHHHHHhhcCceEEE--EeCCCH-HHHHHHHHHHHHHhhccCCcEEEEEEe
Q 016903 217 SDGAVVKGRAYGVRSIR--VDGNDA-LAIYSAVHAAREMAIGEGRPILIEALT 266 (380)
Q Consensus 217 ~~~~~~~a~a~G~~~~~--VdG~D~-~av~~a~~~a~~~ar~~~gP~lIe~~t 266 (380)
..++.+.+++.|+..+. |.+.++ .+-..++.++++. ..+|+|+.|++
T Consensus 46 ~~~~~~~a~~~Gl~y~~iPv~~~~~~~~~v~~f~~~l~~---~~~Pvl~hC~s 95 (110)
T PF04273_consen 46 SAEEAAAAEALGLQYVHIPVDGGAITEEDVEAFADALES---LPKPVLAHCRS 95 (110)
T ss_dssp HHCHHHHHHHCT-EEEE----TTT--HHHHHHHHHHHHT---TTTSEEEE-SC
T ss_pred HHHHHHHHHHcCCeEEEeecCCCCCCHHHHHHHHHHHHh---CCCCEEEECCC
Confidence 34577889999998887 444333 4455566666653 57899999965
No 246
>COG1240 ChlD Mg-chelatase subunit ChlD [Coenzyme metabolism]
Probab=64.85 E-value=49 Score=31.58 Aligned_cols=98 Identities=19% Similarity=0.106 Sum_probs=60.0
Q ss_pred ccccchHHHHHHHHHhhhcCC-CCeeEEEeCccccC----cchHHHHHHHHHHcCC-CEEEEEEcCCcccccccccccCC
Q 016903 144 TIATQLPHAVGAAYALKMDRK-DACAVTYFGDGGTS----EGDFHAALNFSAVTEA-PVIFICRNNGWAISTPISDQFRS 217 (380)
Q Consensus 144 ~lG~~lp~A~G~A~A~k~~~~-~~~vv~~~GDG~~~----eG~~~Eal~~A~~~~L-pvi~vv~NN~~~~~~~~~~~~~~ 217 (380)
+|+.++-.|..+..-.+.+++ ...+++++-||=.+ .|...|++..|....+ ++-++|.|-. ... ...
T Consensus 155 PL~~aL~~a~ev~~r~~r~~p~~~~~~vviTDGr~n~~~~~~~~~e~~~~a~~~~~~g~~~lvid~e------~~~-~~~ 227 (261)
T COG1240 155 PLADALRQAYEVLAREKRRGPDRRPVMVVITDGRANVPIPLGPKAETLEAASKLRLRGIQLLVIDTE------GSE-VRL 227 (261)
T ss_pred chHHHHHHHHHHHHHhhccCCCcceEEEEEeCCccCCCCCCchHHHHHHHHHHHhhcCCcEEEEecC------Ccc-ccc
Confidence 445545555444433344444 45788999999764 4556788888887765 5444333321 111 111
Q ss_pred cCHHHHHhhcCceEEEEeCCCHHHHHHHHHH
Q 016903 218 DGAVVKGRAYGVRSIRVDGNDALAIYSAVHA 248 (380)
Q Consensus 218 ~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~ 248 (380)
.-..++|..+|.++++++...-..+..+++.
T Consensus 228 g~~~~iA~~~Gg~~~~L~~l~~~~i~~~~r~ 258 (261)
T COG1240 228 GLAEEIARASGGEYYHLDDLSDDSIVSAVRQ 258 (261)
T ss_pred cHHHHHHHHhCCeEEecccccchHHHHHHHh
Confidence 2245789999999999997776777666554
No 247
>PRK07449 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase; Validated
Probab=63.25 E-value=29 Score=36.64 Aligned_cols=109 Identities=15% Similarity=0.107 Sum_probs=57.0
Q ss_pred hHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCcCHHHHHhhcC
Q 016903 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 228 (380)
Q Consensus 149 lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~~~~~~~~~~~~~~~~~~a~a~G 228 (380)
.-+|.|.|.+. +.-.++++..|=|.++ ..-++..|...++|||+|.-.-...... .......+....++.+-
T Consensus 60 ~~aAdgyar~t---g~~~v~~vt~GpG~~N---~l~~i~~A~~~~~Pvl~IsG~~~~~~~~--~~~~q~~d~~~~~~~~t 131 (568)
T PRK07449 60 GFLALGLAKAS---KRPVAVIVTSGTAVAN---LYPAVIEAGLTGVPLIVLTADRPPELRD--CGANQAIDQLGLFGSYP 131 (568)
T ss_pred HHHHHHHHHhh---CCCEEEEECCccHHHh---hhHHHHHHhhcCCcEEEEECCCCHHHhc--CCCCceecHhhHhhhhh
Confidence 34566666553 3345677777988887 4466788888999999997543322111 11111223444555444
Q ss_pred ceEEEEeCC---CHHH-HHHHHHHHHHHhhc-cCCcEEEEEEe
Q 016903 229 VRSIRVDGN---DALA-IYSAVHAAREMAIG-EGRPILIEALT 266 (380)
Q Consensus 229 ~~~~~VdG~---D~~a-v~~a~~~a~~~ar~-~~gP~lIe~~t 266 (380)
...+++.-. .... +..+++.+.. +.. ..||+.|++-.
T Consensus 132 ~~~v~~~~~~~~~~~~~~~~~~~a~~~-a~~~~~GPV~i~iP~ 173 (568)
T PRK07449 132 FTSLALPEPTQDILAYWLVTTIDAALA-AQTLQAGPVHINCPF 173 (568)
T ss_pred hhccCCCCCCchhHHHHHHHHHHHHHH-hcCCCCCCEEEeCCC
Confidence 222221111 1111 2334443332 323 46999999874
No 248
>PF13519 VWA_2: von Willebrand factor type A domain; PDB: 3IBS_B 3RAG_B 2X5N_A.
Probab=63.09 E-value=31 Score=29.12 Aligned_cols=73 Identities=16% Similarity=0.078 Sum_probs=45.3
Q ss_pred CCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCcCHHHHHhhcCceEEEEeCCCHHHHHH
Q 016903 165 DACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYS 244 (380)
Q Consensus 165 ~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~VdG~D~~av~~ 244 (380)
.++.++++.||.-+ +...+.+..+...++++.+|........ ...+...++.-|..++.++ .+..++.+
T Consensus 99 ~~~~iv~iTDG~~~-~~~~~~~~~~~~~~i~i~~v~~~~~~~~---------~~~l~~la~~tgG~~~~~~-~~~~~l~~ 167 (172)
T PF13519_consen 99 RRRAIVLITDGEDN-SSDIEAAKALKQQGITIYTVGIGSDSDA---------NEFLQRLAEATGGRYFHVD-NDPEDLDD 167 (172)
T ss_dssp EEEEEEEEES-TTH-CHHHHHHHHHHCTTEEEEEEEES-TT-E---------HHHHHHHHHHTEEEEEEE--SSSHHHHH
T ss_pred CceEEEEecCCCCC-cchhHHHHHHHHcCCeEEEEEECCCccH---------HHHHHHHHHhcCCEEEEec-CCHHHHHH
Confidence 56889999999876 4455667766666666555544332211 1235677888888888884 24577777
Q ss_pred HHHH
Q 016903 245 AVHA 248 (380)
Q Consensus 245 a~~~ 248 (380)
++++
T Consensus 168 ~~~~ 171 (172)
T PF13519_consen 168 AFQQ 171 (172)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 7654
No 249
>PF09851 SHOCT: Short C-terminal domain; InterPro: IPR018649 This family of hypothetical prokaryotic proteins has no known function.
Probab=62.46 E-value=12 Score=23.48 Aligned_cols=28 Identities=7% Similarity=0.197 Sum_probs=20.4
Q ss_pred ChHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 016903 295 DPVTRFRKWIESNGWWNGDIESELRSSVR 323 (380)
Q Consensus 295 DPi~~~~~~L~~~g~~t~~e~~~i~~~~~ 323 (380)
+++..++. |.+.|++|++|.++.++++.
T Consensus 3 ~~L~~L~~-l~~~G~IseeEy~~~k~~ll 30 (31)
T PF09851_consen 3 DRLEKLKE-LYDKGEISEEEYEQKKARLL 30 (31)
T ss_pred HHHHHHHH-HHHcCCCCHHHHHHHHHHHh
Confidence 34455544 56789999999998887753
No 250
>cd01453 vWA_transcription_factor_IIH_type Transcription factors IIH type: TFIIH is a multiprotein complex that is one of the five general transcription factors that binds RNA polymerase II holoenzyme. Orthologues of these genes are found in all completed eukaryotic genomes and all these proteins contain a VWA domain. The p44 subunit of TFIIH functions as a DNA helicase in RNA polymerase II transcription initiation and DNA repair, and its transcriptional activity is dependent on its C-terminal Zn-binding domains. The function of the vWA domain is unclear, but may be involved in complex assembly. The MIDAS motif is not conserved in this sub-group.
Probab=60.83 E-value=72 Score=28.42 Aligned_cols=71 Identities=10% Similarity=-0.037 Sum_probs=47.0
Q ss_pred CCeeEEEeCccccC-cchHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCcCHHHHHhhcCceEEEEeCCCHHHHH
Q 016903 165 DACAVTYFGDGGTS-EGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIY 243 (380)
Q Consensus 165 ~~~vv~~~GDG~~~-eG~~~Eal~~A~~~~Lpvi~vv~NN~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~VdG~D~~av~ 243 (380)
.+.++++++||+-. .+...+....++..++.|-+|-..+. ..-+.+.+++-|-..+.+. |..++.
T Consensus 107 ~~~iiil~sd~~~~~~~~~~~~~~~l~~~~I~v~~IgiG~~------------~~~L~~ia~~tgG~~~~~~--~~~~l~ 172 (183)
T cd01453 107 SREVLIIFSSLSTCDPGNIYETIDKLKKENIRVSVIGLSAE------------MHICKEICKATNGTYKVIL--DETHLK 172 (183)
T ss_pred ceEEEEEEcCCCcCChhhHHHHHHHHHHcCcEEEEEEechH------------HHHHHHHHHHhCCeeEeeC--CHHHHH
Confidence 35578888888754 33455666667777776544443221 1226678999999999886 778888
Q ss_pred HHHHHH
Q 016903 244 SAVHAA 249 (380)
Q Consensus 244 ~a~~~a 249 (380)
+++.++
T Consensus 173 ~~~~~~ 178 (183)
T cd01453 173 ELLLEH 178 (183)
T ss_pred HHHHhc
Confidence 777664
No 251
>PRK11032 hypothetical protein; Provisional
Probab=60.25 E-value=31 Score=30.52 Aligned_cols=49 Identities=18% Similarity=0.248 Sum_probs=41.0
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCccc
Q 016903 297 VTRFRKWIESNGWWNGDIESELRSSVRKQILHALQEAEKAEKPPISDLF 345 (380)
Q Consensus 297 i~~~~~~L~~~g~~t~~e~~~i~~~~~~~v~~a~~~a~~~p~p~~~~~~ 345 (380)
|...++++.+.|-+|++|++.+.+-++..+++..+..+++..+-.+++|
T Consensus 30 ve~a~~~~~~~~elT~dEl~lv~~ylkRDL~ef~~~~~~~~~~~~~s~~ 78 (160)
T PRK11032 30 VESARKRVDAAGELTRDEVDLITRAVRRDLEEFARSYEESKEEFSDSVF 78 (160)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhccccccccHH
Confidence 7789999999999999999999999999999988876666554444454
No 252
>COG0191 Fba Fructose/tagatose bisphosphate aldolase [Carbohydrate transport and metabolism]
Probab=59.97 E-value=72 Score=30.95 Aligned_cols=113 Identities=16% Similarity=0.150 Sum_probs=71.3
Q ss_pred CCCeeEEEeCccccCcch-----HHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCcCHHHHHhhcCceEEEEeC--
Q 016903 164 KDACAVTYFGDGGTSEGD-----FHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDG-- 236 (380)
Q Consensus 164 ~~~~vv~~~GDG~~~eG~-----~~Eal~~A~~~~Lpvi~vv~NN~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~VdG-- 236 (380)
.+.+||+=+..|+..... .+-...+|..+++||+.=.+--. ..+....+--.|+.++-+||
T Consensus 41 ~~sPvIiq~S~g~~~y~gg~~~~~~~v~~~a~~~~vPV~lHlDHg~------------~~~~~~~ai~~GFsSvMiDgS~ 108 (286)
T COG0191 41 EKSPVIIQFSEGAAKYAGGADSLAHMVKALAEKYGVPVALHLDHGA------------SFEDCKQAIRAGFSSVMIDGSH 108 (286)
T ss_pred hCCCEEEEecccHHHHhchHHHHHHHHHHHHHHCCCCEEEECCCCC------------CHHHHHHHHhcCCceEEecCCc
Confidence 456788888888873211 12233456778889877654221 22344566667999999998
Q ss_pred CCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCCCCC----CCCCCCCCCChhhHHHH
Q 016903 237 NDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHT----TSDDSTKYRPVDEIEWW 290 (380)
Q Consensus 237 ~D~~av~~a~~~a~~~ar~~~gP~lIe~~t~R~~gHs----~~Dd~~~Yr~~~e~~~~ 290 (380)
...++=.+..++.+++|.+.+ +-||+..-+.+|-- ...++..|.+++|...+
T Consensus 109 ~~~eENi~~tkevv~~ah~~g--vsVEaElG~~GG~Edg~~~~~~~~~~tdp~ea~~f 164 (286)
T COG0191 109 LPFEENIAITKEVVEFAHAYG--VSVEAELGTLGGEEDGVVLYTDPADLTDPEEALEF 164 (286)
T ss_pred CCHHHHHHHHHHHHHHHHHcC--CcEEEEeccccCccCCcccccchhhhCCHHHHHHH
Confidence 445666677788888777665 56677776776532 22234567777765555
No 253
>COG1303 Uncharacterized protein conserved in archaea [Function unknown]
Probab=58.94 E-value=25 Score=31.02 Aligned_cols=46 Identities=22% Similarity=0.375 Sum_probs=37.5
Q ss_pred cCHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEe
Q 016903 218 DGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALT 266 (380)
Q Consensus 218 ~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t 266 (380)
+..+--|+|||..++-++|.+-+.+.+.++..+++ -+||..|+..+
T Consensus 21 THV~LtARAfGA~gil~~~e~De~v~esv~dVv~r---wGG~F~v~~~~ 66 (179)
T COG1303 21 THVALTARAFGADGILLDGEEDEKVVESVEDVVER---WGGPFFVKFGV 66 (179)
T ss_pred hhhhhhhHhhCCceEEEcCcccHHHHHHHHHHHHh---cCCCEEEEEcc
Confidence 34666799999999999999777888888888775 78998887643
No 254
>COG1154 Dxs Deoxyxylulose-5-phosphate synthase [Coenzyme metabolism / Lipid metabolism]
Probab=58.24 E-value=70 Score=34.21 Aligned_cols=104 Identities=13% Similarity=0.144 Sum_probs=61.7
Q ss_pred chHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCC-cccccccccccCCcCHHHHHhh
Q 016903 148 QLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPISDQFRSDGAVVKGRA 226 (380)
Q Consensus 148 ~lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~-~~~~~~~~~~~~~~~~~~~a~a 226 (380)
|..+..++++|.. .-++|+++-. .|-|=.+-+-+.=.+..+|||+|+|+..+ .+.++++.... .+++--
T Consensus 368 QHAVT~AAGlA~~---G~kPvvaIYS--TFLQRAYDQliHDvaiqnLPV~faIDRAGivG~DG~TH~G~-----fDls~l 437 (627)
T COG1154 368 QHAVTFAAGLAAE---GMKPVVAIYS--TFLQRAYDQLIHDVAIQNLPVTFAIDRAGIVGADGPTHQGL-----FDLSFL 437 (627)
T ss_pred HHHHHHHHHHHhC---CCCCEEEEec--HHHHHHHHHHHHHHHhccCCeEEEEecCcccCCCCCccccH-----HHHHHH
Confidence 4445555555542 3456666652 33333333444446778999999999666 45666655432 222222
Q ss_pred cCceEEEE-eCCCHHHHHHHHHHHHHHhhccCCcEEEEE
Q 016903 227 YGVRSIRV-DGNDALAIYSAVHAAREMAIGEGRPILIEA 264 (380)
Q Consensus 227 ~G~~~~~V-dG~D~~av~~a~~~a~~~ar~~~gP~lIe~ 264 (380)
--+|.+.+ --.|..++...+..|..+ .++|+.|-.
T Consensus 438 ~~iPnmvi~aP~de~el~~ml~ta~~~---~~gP~AiRy 473 (627)
T COG1154 438 RCIPNMVIMAPRDEEELRQMLYTALAQ---DDGPVAIRY 473 (627)
T ss_pred hcCCCcEEecCCCHHHHHHHHHHHHhc---CCCCeEEEe
Confidence 23444442 345889999999999886 558998853
No 255
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=56.85 E-value=32 Score=28.02 Aligned_cols=57 Identities=26% Similarity=0.303 Sum_probs=30.5
Q ss_pred ccccchHHHHHHHHHhhhc-----------------------CCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEE
Q 016903 144 TIATQLPHAVGAAYALKMD-----------------------RKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFIC 200 (380)
Q Consensus 144 ~lG~~lp~A~G~A~A~k~~-----------------------~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv 200 (380)
.+|.|.+..++..++.++. .++..++++.-.|... ...+.+..|...+.|+|.|.
T Consensus 10 i~G~G~s~~~A~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~is~sg~~~--~~~~~~~~ak~~g~~vi~iT 87 (131)
T PF01380_consen 10 IYGSGSSYGVAQYAALKLQKLGRIVVISYEAGEFFHGPLENLDPDDLVIIISYSGETR--ELIELLRFAKERGAPVILIT 87 (131)
T ss_dssp EEESTHHHHHHHHHHHHHHHHHSSEEEEEEHHHHHTTGGGGCSTTEEEEEEESSSTTH--HHHHHHHHHHHTTSEEEEEE
T ss_pred EEEcchHHHHHHHHHHHHHHhcCcceeccchHHHhhhhcccccccceeEeeeccccch--hhhhhhHHHHhcCCeEEEEe
Confidence 4566666666666666653 2334455555455443 24455555555555555555
Q ss_pred Ec
Q 016903 201 RN 202 (380)
Q Consensus 201 ~N 202 (380)
.+
T Consensus 88 ~~ 89 (131)
T PF01380_consen 88 SN 89 (131)
T ss_dssp SS
T ss_pred CC
Confidence 43
No 256
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]
Probab=53.60 E-value=36 Score=37.70 Aligned_cols=76 Identities=13% Similarity=0.080 Sum_probs=48.0
Q ss_pred CCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCcCHHHHHhhcCceEEEEeCCCHHH
Q 016903 165 DACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDALA 241 (380)
Q Consensus 165 ~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~VdG~D~~a 241 (380)
+++.||+-|+... +..+-.+..+|..++.|...|...+.-....+............+|+.+|...+++.|.|+..
T Consensus 249 e~ilvcI~~~~~~-e~liR~a~RlA~~~~a~~~av~v~~~~~~~~~~~~~~~l~~~~~Lae~lGae~~~l~~~dv~~ 324 (890)
T COG2205 249 ERILVCISGSPGS-EKLIRRAARLASRLHAKWTAVYVETPELHRLSEKEARRLHENLRLAEELGAEIVTLYGGDVAK 324 (890)
T ss_pred ceEEEEECCCCch-HHHHHHHHHHHHHhCCCeEEEEEeccccccccHHHHHHHHHHHHHHHHhCCeEEEEeCCcHHH
Confidence 5677777776554 457889999999999985555332221111111111112234578999999999999988643
No 257
>PRK13685 hypothetical protein; Provisional
Probab=52.33 E-value=1.7e+02 Score=28.63 Aligned_cols=82 Identities=7% Similarity=0.027 Sum_probs=50.2
Q ss_pred CeeEEEeCccccCcch-------HHHHHHHHHHcCCCEEEEEEcCCcc-ccccccc---ccCCcCHHHHHhhcCceEEEE
Q 016903 166 ACAVTYFGDGGTSEGD-------FHAALNFSAVTEAPVIFICRNNGWA-ISTPISD---QFRSDGAVVKGRAYGVRSIRV 234 (380)
Q Consensus 166 ~~vv~~~GDG~~~eG~-------~~Eal~~A~~~~Lpvi~vv~NN~~~-~~~~~~~---~~~~~~~~~~a~a~G~~~~~V 234 (380)
..+|+++.||.-+.|. ..++.+.+...+++|-.|-.-+..+ +...... ......+.++|+.-|...+.+
T Consensus 194 ~~~IILlTDG~~~~~~~~~~~~~~~~aa~~a~~~gi~i~~Ig~G~~~g~~~~~g~~~~~~~d~~~L~~iA~~tgG~~~~~ 273 (326)
T PRK13685 194 PARIVLMSDGKETVPTNPDNPRGAYTAARTAKDQGVPISTISFGTPYGSVEINGQRQPVPVDDESLKKIAQLSGGEFYTA 273 (326)
T ss_pred CCEEEEEcCCCCCCCCCCCCcccHHHHHHHHHHcCCeEEEEEECCCCCCcCcCCceeeecCCHHHHHHHHHhcCCEEEEc
Confidence 4678899999876542 2466777888888865554433221 1100000 011234667888889888888
Q ss_pred eCCCHHHHHHHHHHH
Q 016903 235 DGNDALAIYSAVHAA 249 (380)
Q Consensus 235 dG~D~~av~~a~~~a 249 (380)
+ |..++.+++++.
T Consensus 274 ~--~~~~L~~if~~I 286 (326)
T PRK13685 274 A--SLEELRAVYATL 286 (326)
T ss_pred C--CHHHHHHHHHHH
Confidence 7 777777666654
No 258
>cd01451 vWA_Magnesium_chelatase Magnesium chelatase: Mg-chelatase catalyses the insertion of Mg into protoporphyrin IX (Proto). In chlorophyll biosynthesis, insertion of Mg2+ into protoporphyrin IX is catalysed by magnesium chelatase in an ATP-dependent reaction. Magnesium chelatase is a three sub-unit (BchI, BchD and BchH) enzyme with a novel arrangement of domains: the C-terminal helical domain is located behind the nucleotide binding site. The BchD domain contains a AAA domain at its N-terminus and a VWA domain at its C-terminus. The VWA domain has been speculated to be involved in mediating protein-protein interactions.
Probab=52.10 E-value=1.6e+02 Score=25.67 Aligned_cols=72 Identities=26% Similarity=0.185 Sum_probs=43.3
Q ss_pred CeeEEEeCccccCcch--H----HHHHHHHHHcCCCEEEEEEcCCcccccccccccCCcCHHHHHhhcCceEEEEeCCCH
Q 016903 166 ACAVTYFGDGGTSEGD--F----HAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDA 239 (380)
Q Consensus 166 ~~vv~~~GDG~~~eG~--~----~Eal~~A~~~~Lpvi~vv~NN~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~VdG~D~ 239 (380)
+.+++++.||.-+.|. . .+....+...+++++.|-.. . ......-+.++|+.-|...+.++.-+-
T Consensus 99 ~~~ivliTDG~~~~g~~~~~~~~~~~~~~l~~~gi~v~~I~~~-~--------~~~~~~~l~~iA~~tgG~~~~~~d~~~ 169 (178)
T cd01451 99 RPLIVVITDGRANVGPDPTADRALAAARKLRARGISALVIDTE-G--------RPVRRGLAKDLARALGGQYVRLPDLSA 169 (178)
T ss_pred ceEEEEECCCCCCCCCCchhHHHHHHHHHHHhcCCcEEEEeCC-C--------CccCccHHHHHHHHcCCeEEEcCcCCH
Confidence 5799999999877543 1 33344455667777554211 1 000112356788888999999886555
Q ss_pred HHHHHHH
Q 016903 240 LAIYSAV 246 (380)
Q Consensus 240 ~av~~a~ 246 (380)
.++..++
T Consensus 170 ~~~~~~~ 176 (178)
T cd01451 170 DAIASAV 176 (178)
T ss_pred HHHHHHh
Confidence 5554443
No 259
>TIGR02176 pyruv_ox_red pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric. This model represents a single chain form of pyruvate:ferredoxin (or flavodoxin) oxidoreductase. This enzyme may transfer electrons to nitrogenase in nitrogen-fixing species. Portions of this protein are homologous to gamma subunit of the four subunit pyruvate:ferredoxin (flavodoxin) oxidoreductase.
Probab=51.18 E-value=1.3e+02 Score=35.18 Aligned_cols=112 Identities=15% Similarity=0.088 Sum_probs=68.1
Q ss_pred hHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCcCHHHHHhhcC
Q 016903 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 228 (380)
Q Consensus 149 lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~~~~~~~~~~~~~~~~~~a~a~G 228 (380)
++.++|++.+ +.++.+++.=.++. .++|.|-.++-..+|+|+++.+-.+..... .-.....|+ -.++.-|
T Consensus 64 ~~av~GA~~a------Gara~T~TSs~GL~--LM~e~l~~~ag~~~P~Vi~va~R~~~~~~~-~i~~dh~Dv-~~~R~~G 133 (1165)
T TIGR02176 64 AGAVHGALQT------GALTTTFTASQGLL--LMIPNMYKIAGELLPCVFHVSARAIAAHAL-SIFGDHQDV-MAARQTG 133 (1165)
T ss_pred HHHHHhHhhc------CCCEEEecChhHHH--HHHHHHHHHHhccCCEEEEEecCCCCCCCC-ccCCCchHH-HHhhcCC
Confidence 5566776543 23454443322232 357878656656889999888765543210 001111233 3456678
Q ss_pred ceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCCCCC
Q 016903 229 VRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHT 273 (380)
Q Consensus 229 ~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t~R~~gHs 273 (380)
|..+. ..++.++++..-.|...|.+...|+++-..-+|. +|.
T Consensus 134 ~ivl~--s~svQEa~D~al~A~~lAe~~~~Pvi~~~Dgf~t-sh~ 175 (1165)
T TIGR02176 134 FAMLA--SSSVQEVMDLALVAHLATIEARVPFMHFFDGFRT-SHE 175 (1165)
T ss_pred eEEEe--CCCHHHHHHHHHHHHHHHHhcCCCEEEEecCcee-ccc
Confidence 85554 4589999888888888777788999998877765 454
No 260
>COG0079 HisC Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism]
Probab=46.25 E-value=2.3e+02 Score=28.21 Aligned_cols=138 Identities=15% Similarity=0.116 Sum_probs=76.7
Q ss_pred HHHHHHHHcCCCEEEEEE-cCCcccccccccccCCcCHHHHHhhcCceE-EEEeCCCHHHHHHHH-HHHHHHhhccCCcE
Q 016903 184 AALNFSAVTEAPVIFICR-NNGWAISTPISDQFRSDGAVVKGRAYGVRS-IRVDGNDALAIYSAV-HAAREMAIGEGRPI 260 (380)
Q Consensus 184 Eal~~A~~~~Lpvi~vv~-NN~~~~~~~~~~~~~~~~~~~~a~a~G~~~-~~VdG~D~~av~~a~-~~a~~~ar~~~gP~ 260 (380)
+++..+..-+..+||||+ || |+.......++...++.....+ +.||- +-.+-. ...+..+. ..+-
T Consensus 136 ~~~~~~~~~~~~lv~i~nPNN------PTG~~~~~~~l~~l~~~~~~~~~vVvDE----AY~eF~~~~~~~l~~--~~~n 203 (356)
T COG0079 136 DAILAAIRDKTKLVFLCNPNN------PTGTLLPREELRALLEALPEGGLVVIDE----AYIEFSPESSLELLK--YPPN 203 (356)
T ss_pred HHHHHhhhcCCCEEEEeCCCC------CCCCCCCHHHHHHHHHhCCCCcEEEEeC----chhhcCCchhhhhcc--CCCC
Confidence 445555555788999998 66 5555555566777776653333 33551 111111 12233222 3565
Q ss_pred EEEEEeecC-CCCCCCCCCCCC--CChhhHHHHHhcCCh--HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 016903 261 LIEALTYRV-GHHTTSDDSTKY--RPVDEIEWWRTTQDP--VTRFRKWIESNGWWNGDIESELRSSVRKQILHALQEAEK 335 (380)
Q Consensus 261 lIe~~t~R~-~gHs~~Dd~~~Y--r~~~e~~~~~~~~DP--i~~~~~~L~~~g~~t~~e~~~i~~~~~~~v~~a~~~a~~ 335 (380)
||.++|+-. +|=... --.| =+++-++.+.+.+.| +......+....+-.++.+++..+.+.++-+.-.+...+
T Consensus 204 livlRTfSKa~gLAGl--RlGy~ia~~~~i~~l~~vr~p~~v~~~a~~aa~aal~~~~~~~~~~~~~~~~r~rl~~~l~~ 281 (356)
T COG0079 204 LIVLRTFSKAFGLAGL--RVGYAIANPELIAALNKVRPPFNVSSPALAAAIAALRDADYLEESVERIREERERLYAALKA 281 (356)
T ss_pred EEEEEecHHhhhcchh--ceeeccCCHHHHHHHHHhcCCCCCCHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 888888643 332211 1123 456667777666777 566666666555555666666666666665555555554
No 261
>cd00640 Trp-synth-beta_II Tryptophan synthase beta superfamily (fold type II); this family of pyridoxal phosphate (PLP)-dependent enzymes catalyzes beta-replacement and beta-elimination reactions. This CD corresponds to aminocyclopropane-1-carboxylate deaminase (ACCD), tryptophan synthase beta chain (Trp-synth_B), cystathionine beta-synthase (CBS), O-acetylserine sulfhydrylase (CS), serine dehydratase (Ser-dehyd), threonine dehydratase (Thr-dehyd), diaminopropionate ammonia lyase (DAL), and threonine synthase (Thr-synth). ACCD catalyzes the conversion of 1-aminocyclopropane-1-carboxylate to alpha-ketobutyrate and ammonia. Tryptophan synthase folds into a tetramer, where the beta chain is the catalytic PLP-binding subunit and catalyzes the formation of L-tryptophan from indole and L-serine. CBS is a tetrameric hemeprotein that catalyzes condensation of serine and homocysteine to cystathionine. CS is a homodimer that catalyzes the formation of L-cysteine from O-acetyl-L-serine. Ser-dehy
Probab=46.15 E-value=1.8e+02 Score=26.83 Aligned_cols=38 Identities=21% Similarity=0.232 Sum_probs=27.4
Q ss_pred HHHHcCCCEEEEEEcCCcccccccccccCCcCHHHHHhhcCceEEEEeCC
Q 016903 188 FSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGN 237 (380)
Q Consensus 188 ~A~~~~Lpvi~vv~NN~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~VdG~ 237 (380)
.|...++|+++++.++. ...-....+.+|..++.+++.
T Consensus 68 ~a~~~g~~~~v~~p~~~------------~~~~~~~~~~~Ga~v~~~~~~ 105 (244)
T cd00640 68 AAARLGLKCTIVMPEGA------------SPEKVAQMRALGAEVVLVPGD 105 (244)
T ss_pred HHHHcCCCEEEEECCCC------------CHHHHHHHHHCCCEEEEECCC
Confidence 45568899998887653 112345678899999999875
No 262
>PRK00945 acetyl-CoA decarbonylase/synthase complex subunit epsilon; Provisional
Probab=45.92 E-value=1.4e+02 Score=26.71 Aligned_cols=37 Identities=14% Similarity=0.047 Sum_probs=29.3
Q ss_pred CCeeEEEeCccccC-cchHHHHHHHHHHcCCCEEEEEE
Q 016903 165 DACAVTYFGDGGTS-EGDFHAALNFSAVTEAPVIFICR 201 (380)
Q Consensus 165 ~~~vv~~~GDG~~~-eG~~~Eal~~A~~~~Lpvi~vv~ 201 (380)
-++.+.++|.|... ....-+...+|..+++|++.-..
T Consensus 34 AKrPlIivG~ga~~~~ea~e~l~elaEkl~iPVvtT~~ 71 (171)
T PRK00945 34 AKRPLLVVGSLLLDDEELLDRAVKIAKKANIPVAATGG 71 (171)
T ss_pred CCCcEEEECcCccccchHHHHHHHHHHHHCCCEEEccc
Confidence 35678889999987 66667788899999999886554
No 263
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=45.43 E-value=87 Score=25.50 Aligned_cols=19 Identities=21% Similarity=0.293 Sum_probs=11.6
Q ss_pred CHHHHHhhcCceEEEEeCC
Q 016903 219 GAVVKGRAYGVRSIRVDGN 237 (380)
Q Consensus 219 ~~~~~a~a~G~~~~~VdG~ 237 (380)
+..+.++..|++++.+.++
T Consensus 65 ~~~~~a~~~g~~vi~iT~~ 83 (128)
T cd05014 65 NLLPHLKRRGAPIIAITGN 83 (128)
T ss_pred HHHHHHHHCCCeEEEEeCC
Confidence 3456666667776666544
No 264
>PRK13683 hypothetical protein; Provisional
Probab=44.63 E-value=24 Score=27.78 Aligned_cols=39 Identities=28% Similarity=0.426 Sum_probs=30.1
Q ss_pred CceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCC
Q 016903 228 GVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVG 270 (380)
Q Consensus 228 G~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t~R~~ 270 (380)
-+.+-+-+-.|.+++|.-+.+|++ .+.|.+||..|.+..
T Consensus 14 P~SVQRKe~edA~alYq~I~~am~----sg~P~llELtCek~~ 52 (87)
T PRK13683 14 PISVQRKEAEDAEALYQQIRQAMR----SGNPRLLELTCEKVE 52 (87)
T ss_pred ceEEEeccHHHHHHHHHHHHHHHh----cCCCcEEEEEecCcC
Confidence 344445555688999999999986 478999999998754
No 265
>TIGR00239 2oxo_dh_E1 2-oxoglutarate dehydrogenase, E1 component. The E1 ortholog from Corynebacterium glutamicum is unusual in having an N-terminal extension that resembles the dihydrolipoamide succinyltransferase (E2) component of 2-oxoglutarate dehydrogenase.
Probab=43.95 E-value=1.7e+02 Score=33.30 Aligned_cols=109 Identities=12% Similarity=0.155 Sum_probs=64.3
Q ss_pred ccchHHHHHHHHHhhhcCCCCeeE--EEeCccccC-cchHHHHHHH-HHHcCC--CEEEEEEcCCcccccccccccCCcC
Q 016903 146 ATQLPHAVGAAYALKMDRKDACAV--TYFGDGGTS-EGDFHAALNF-SAVTEA--PVIFICRNNGWAISTPISDQFRSDG 219 (380)
Q Consensus 146 G~~lp~A~G~A~A~k~~~~~~~vv--~~~GDG~~~-eG~~~Eal~~-A~~~~L--pvi~vv~NN~~~~~~~~~~~~~~~~ 219 (380)
.+.++.++|+|+. +++.+|| +-+||=+.. |-.+-+-++. ++.|+- ++|+.+-. +|...++...+.+...
T Consensus 657 ~a~~G~~~G~a~~----g~~~l~i~E~qfgDF~~~AQv~~Dq~i~~~~~K~~~~sglv~~~p~-G~~g~g~~hsS~~~E~ 731 (929)
T TIGR00239 657 ESVLGFEYGYATT----SPRTLVIWEAQFGDFANGAQVVIDQFISSGEQKWGQMSGLVMLLPH-GYEGQGPEHSSGRLER 731 (929)
T ss_pred HHHHHHHHhHHhc----CCCCceEEEEeccchhcchHHHHHHHHHHHHHHhcCccCeEEEecC-cCCCCCchhhccCHHH
Confidence 3445667777664 5556544 455554431 1225555666 567764 76655543 4655555444333344
Q ss_pred HHHHHhhcCceEEEEeCCCHHHHHHHHH-HHHHHhhccCCcEEEEE
Q 016903 220 AVVKGRAYGVRSIRVDGNDALAIYSAVH-AAREMAIGEGRPILIEA 264 (380)
Q Consensus 220 ~~~~a~a~G~~~~~VdG~D~~av~~a~~-~a~~~ar~~~gP~lIe~ 264 (380)
+...+.--||.++... .+.+.+..++ +|+. ..+.|+++--
T Consensus 732 ~lql~~~~gl~Vv~ps--tpad~~~lLrrqa~r---~~~~Pvi~~~ 772 (929)
T TIGR00239 732 FLQLAAEQNMQVCVPT--TPAQVFHILRRQALR---GMRRPLVVMS 772 (929)
T ss_pred HHHHhCCCCCEEEecC--CHHHHHHHHHHHHHh---CCCCCEEEec
Confidence 4444555588888776 8999998888 4663 3478998744
No 266
>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=42.65 E-value=3.2e+02 Score=26.42 Aligned_cols=113 Identities=14% Similarity=0.090 Sum_probs=72.9
Q ss_pred CCeeEEEeCccccCcchHHH----HHHHHHHcCCCEEEEEEcCCcccccccccccCCcCHHHHHhhcCceEEEEeCC--C
Q 016903 165 DACAVTYFGDGGTSEGDFHA----ALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGN--D 238 (380)
Q Consensus 165 ~~~vv~~~GDG~~~eG~~~E----al~~A~~~~Lpvi~vv~NN~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~VdG~--D 238 (380)
+.+++.-+..+.+....... ...+|...+.||.+=.+-- . ..+...+|-..|+.++-+||. +
T Consensus 42 ~sPvIiq~~~~~~~~~g~~~~~~~~~~~A~~~~VPV~lHLDHg-----------~-~~e~i~~Ai~~GftSVM~DgS~l~ 109 (284)
T PRK09195 42 HSPVIIAGTPGTFSYAGTEYLLAIVSAAAKQYHHPLALHLDHH-----------E-KFDDIAQKVRSGVRSVMIDGSHLP 109 (284)
T ss_pred CCCEEEEcChhHHhhCCHHHHHHHHHHHHHHCCCCEEEECCCC-----------C-CHHHHHHHHHcCCCEEEeCCCCCC
Confidence 46788888888874322211 2234566778976554321 1 123456676779999999984 5
Q ss_pred HHHHHHHHHHHHHHhhccCCcEEEEEEeecCCCCCCC----CCCCCCCChhhHHHHH
Q 016903 239 ALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTS----DDSTKYRPVDEIEWWR 291 (380)
Q Consensus 239 ~~av~~a~~~a~~~ar~~~gP~lIe~~t~R~~gHs~~----Dd~~~Yr~~~e~~~~~ 291 (380)
.++=.+..++.+++|+..+ +-||+..-+.+|-... ++...|.+++|.+++-
T Consensus 110 ~eeNi~~T~~vv~~Ah~~g--v~VEaElG~vgg~e~~~~~~~~~~~~T~peea~~Fv 164 (284)
T PRK09195 110 FAQNISLVKEVVDFCHRFD--VSVEAELGRLGGQEDDLQVDEADALYTDPAQAREFV 164 (284)
T ss_pred HHHHHHHHHHHHHHHHHcC--CEEEEEEecccCcccCcccccccccCCCHHHHHHHH
Confidence 6666777788888877653 6788888777643221 1234599999988774
No 267
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=41.17 E-value=2.2e+02 Score=27.03 Aligned_cols=96 Identities=16% Similarity=0.143 Sum_probs=56.9
Q ss_pred HHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHH-cCCCEEEEEEcCCcccccccccccCCcCHHHHHhhcCceEEEE
Q 016903 156 AYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAV-TEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRV 234 (380)
Q Consensus 156 A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~-~~Lpvi~vv~NN~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~V 234 (380)
.+|..+...+...+.+..|-.+..|. .+-+..+.. -++||+. .| | .++ +.-...+..+|..++.+
T Consensus 74 ~~A~~~~~~GA~aisvlte~~~f~g~-~~~l~~v~~~v~iPvl~--kd--f--i~~-------~~qi~~a~~~GAD~VlL 139 (260)
T PRK00278 74 EIAKAYEAGGAACLSVLTDERFFQGS-LEYLRAARAAVSLPVLR--KD--F--IID-------PYQIYEARAAGADAILL 139 (260)
T ss_pred HHHHHHHhCCCeEEEEecccccCCCC-HHHHHHHHHhcCCCEEe--ee--e--cCC-------HHHHHHHHHcCCCEEEE
Confidence 44444555566778888888876665 354555544 4789884 11 2 111 11235677788888888
Q ss_pred eCCCHHHHHHHHHHHHHHhhccCCcEEEEEEee
Q 016903 235 DGNDALAIYSAVHAAREMAIGEGRPILIEALTY 267 (380)
Q Consensus 235 dG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t~ 267 (380)
++.+... ..+++.+++++.-+.-+++|+.+.
T Consensus 140 i~~~l~~--~~l~~li~~a~~lGl~~lvevh~~ 170 (260)
T PRK00278 140 IVAALDD--EQLKELLDYAHSLGLDVLVEVHDE 170 (260)
T ss_pred EeccCCH--HHHHHHHHHHHHcCCeEEEEeCCH
Confidence 8766221 344444444445567788887654
No 268
>PF07295 DUF1451: Protein of unknown function (DUF1451); InterPro: IPR009912 This family consists of several hypothetical bacterial proteins of around 160 residues in length. Members of this family contain four highly conserved cysteine resides toward the C-terminal region of the protein. The function of this family is unknown.
Probab=39.90 E-value=70 Score=27.86 Aligned_cols=42 Identities=7% Similarity=0.171 Sum_probs=37.0
Q ss_pred CChHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 016903 294 QDPVTRFRKWIESNGWWNGDIESELRSSVRKQILHALQEAEK 335 (380)
Q Consensus 294 ~DPi~~~~~~L~~~g~~t~~e~~~i~~~~~~~v~~a~~~a~~ 335 (380)
.+-|...++++.+.|-+|++|++.+.+-++..+++..+....
T Consensus 17 ~~~le~a~e~~~~~~elT~eEl~lv~~ylkRDl~~~a~~~~~ 58 (146)
T PF07295_consen 17 QEALEKAKEYLVAAGELTREELALVSAYLKRDLEEFARYYEE 58 (146)
T ss_pred HHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677899999999999999999999999999998887666
No 269
>PF06833 MdcE: Malonate decarboxylase gamma subunit (MdcE); InterPro: IPR009648 This family consists of several bacterial malonate decarboxylase gamma subunit proteins. Malonate decarboxylase of Klebsiella pneumoniae consists of four different subunits and catalyses the conversion of malonate plus H+ to acetate and CO2. The catalysis proceeds via acetyl and malonyl thioester residues with the phosphribosyl-dephospho-CoA prosthetic group of the acyl carrier protein (ACP) subunit. MdcD and E together probably function as malonyl-S-ACP decarboxylase []. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase, while the gamma subunit appears either to mediate subunit interaction or to act as a co-decarboxylase with the beta subunit. The beta and gamma subunits exhibit some local sequence similarity.
Probab=39.86 E-value=2.3e+02 Score=26.66 Aligned_cols=76 Identities=16% Similarity=0.245 Sum_probs=44.4
Q ss_pred CCeeEEEeCccccCcchHHHHHHHHHH--------cCCCEEEEEEcCCcccccccccccCCcCHHHHHhhcCceEEEEeC
Q 016903 165 DACAVTYFGDGGTSEGDFHAALNFSAV--------TEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDG 236 (380)
Q Consensus 165 ~~~vv~~~GDG~~~eG~~~Eal~~A~~--------~~Lpvi~vv~NN~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~VdG 236 (380)
+...++++||-.-.+=.+-|++.+|.. .|-|+|+||+.-+.+.+ .+=+.+|++
T Consensus 28 ~~~~iaVvg~~~~~~vGl~ea~~lA~~V~~~i~~~~krpIv~lVD~~sQa~g-------------rreEllGi~------ 88 (234)
T PF06833_consen 28 DGRFIAVVGDANHGEVGLEEAWALAKAVLDTIRSGPKRPIVALVDVPSQAYG-------------RREELLGIN------ 88 (234)
T ss_pred CCcEEEEEecCCCCcccHHHHHHHHHHHHHHHhcCCCCCEEEEEeCCccccc-------------hHHHHhhHH------
Confidence 456777777766544446777777743 35599999986544333 233344431
Q ss_pred CCHHHHHHHHHHHHHHhhccCCcEEEE
Q 016903 237 NDALAIYSAVHAAREMAIGEGRPILIE 263 (380)
Q Consensus 237 ~D~~av~~a~~~a~~~ar~~~gP~lIe 263 (380)
.-...+..+...+|..+.|++=-
T Consensus 89 ----~alAhla~a~a~AR~~GHpvI~L 111 (234)
T PF06833_consen 89 ----QALAHLAKAYALARLAGHPVIGL 111 (234)
T ss_pred ----HHHHHHHHHHHHHHHcCCCeEEE
Confidence 22344455566666666676543
No 270
>COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]
Probab=39.22 E-value=3.9e+02 Score=27.07 Aligned_cols=64 Identities=17% Similarity=0.278 Sum_probs=37.6
Q ss_pred CCeeEEEeCccccCcchHHHHHHHHHHcCC--C--EEEEEEcCCcccccccccccCCcCHHHHHhhcCceEEEEeC----
Q 016903 165 DACAVTYFGDGGTSEGDFHAALNFSAVTEA--P--VIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDG---- 236 (380)
Q Consensus 165 ~~~vv~~~GDG~~~eG~~~Eal~~A~~~~L--p--vi~vv~NN~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~VdG---- 236 (380)
+..++.+.|-|++. +| |+..++ | -|.|+.|..|+ ..+++.++.||.++..++-
T Consensus 55 ~~~~~ll~gsGt~a----mE----Aav~sl~~pgdkVLv~~nG~FG-----------~R~~~ia~~~g~~v~~~~~~wg~ 115 (383)
T COG0075 55 NGDVVLLSGSGTLA----ME----AAVASLVEPGDKVLVVVNGKFG-----------ERFAEIAERYGAEVVVLEVEWGE 115 (383)
T ss_pred CCcEEEEcCCcHHH----HH----HHHHhccCCCCeEEEEeCChHH-----------HHHHHHHHHhCCceEEEeCCCCC
Confidence 34677777777663 23 222222 3 66666665554 2477778888887777653
Q ss_pred -CCHHHHHHHHH
Q 016903 237 -NDALAIYSAVH 247 (380)
Q Consensus 237 -~D~~av~~a~~ 247 (380)
-|++++.++++
T Consensus 116 ~v~p~~v~~~L~ 127 (383)
T COG0075 116 AVDPEEVEEALD 127 (383)
T ss_pred CCCHHHHHHHHh
Confidence 45666655554
No 271
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=38.98 E-value=2.6e+02 Score=30.02 Aligned_cols=95 Identities=22% Similarity=0.183 Sum_probs=60.0
Q ss_pred ccccchHHHHHHHHHhhh----c-CCCCeeEEEeCccccCcch---------HHHHHHHHHH---cCCCEEEEEEcCCcc
Q 016903 144 TIATQLPHAVGAAYALKM----D-RKDACAVTYFGDGGTSEGD---------FHAALNFSAV---TEAPVIFICRNNGWA 206 (380)
Q Consensus 144 ~lG~~lp~A~G~A~A~k~----~-~~~~~vv~~~GDG~~~eG~---------~~Eal~~A~~---~~Lpvi~vv~NN~~~ 206 (380)
.-|.+-|++-|+..|.+. . +...++++++-||..+.|. ..+++..|.. .++++++|-.-+.
T Consensus 471 ~~gGgTpL~~gL~~A~~~l~~~~~~~~~~~iVLlTDG~~n~~~~~~~~~~~~~~~~~~~a~~~~~~gi~~~vId~g~~-- 548 (584)
T PRK13406 471 PGGGGTPLAAGLDAAAALALQVRRKGMTPTVVLLTDGRANIARDGTAGRAQAEEDALAAARALRAAGLPALVIDTSPR-- 548 (584)
T ss_pred CCCCCChHHHHHHHHHHHHHHhccCCCceEEEEEeCCCCCCCccccccccchhhHHHHHHHHHHhcCCeEEEEecCCC--
Confidence 355667777777666543 1 2236889999999987542 2445555444 3455444322111
Q ss_pred cccccccccCCcCHHHHHhhcCceEEEEeCCCHHHHHHHHHHH
Q 016903 207 ISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAA 249 (380)
Q Consensus 207 ~~~~~~~~~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~a 249 (380)
......++|+..|..++.++--+...+..+++.+
T Consensus 549 ---------~~~~~~~LA~~~gg~y~~l~~~~a~~~~~~v~~~ 582 (584)
T PRK13406 549 ---------PQPQARALAEAMGARYLPLPRADAGRLSQAVRAA 582 (584)
T ss_pred ---------CcHHHHHHHHhcCCeEEECCCCCHHHHHHHHHhh
Confidence 1123567899999999999877777777776654
No 272
>KOG1184 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=38.85 E-value=99 Score=32.51 Aligned_cols=97 Identities=18% Similarity=0.157 Sum_probs=53.9
Q ss_pred CeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEc-C-Ccccccc-cccccCCcCHH---HHHhhcCceEEEEeCCCH
Q 016903 166 ACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRN-N-GWAISTP-ISDQFRSDGAV---VKGRAYGVRSIRVDGNDA 239 (380)
Q Consensus 166 ~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~N-N-~~~~~~~-~~~~~~~~~~~---~~a~a~G~~~~~VdG~D~ 239 (380)
.-.|+.+|=|+++ ...++.-|=..++|||+||-- | .-+.+.. ........||. +.++..-+...-++ |.
T Consensus 68 ~a~VtTfgVGeLS---AlNGIAGsYAE~vpVihIVG~Pnt~~q~t~~LLHHTLG~gDF~vf~rm~k~vsc~~a~I~--~~ 142 (561)
T KOG1184|consen 68 GACVTTFGVGELS---ALNGIAGAYAENVPVIHIVGVPNTNDQGTQRLLHHTLGNGDFTVFHRMFKKVTCYTAMIN--DI 142 (561)
T ss_pred eEEEEEeccchhh---hhcccchhhhhcCCEEEEECCCCcccccccchheeecCCCchHHHHHHHHhhhhHHhhhc--CH
Confidence 4578888999885 222233344568999999941 1 1111111 01112233443 55555555555555 55
Q ss_pred HHHHHHHHHHHHHhhccCCcEEEEEEee
Q 016903 240 LAIYSAVHAAREMAIGEGRPILIEALTY 267 (380)
Q Consensus 240 ~av~~a~~~a~~~ar~~~gP~lIe~~t~ 267 (380)
+...+-+.+|+..+-...+|+-|.+.+-
T Consensus 143 e~A~~~ID~aI~~~~~~~rPVYi~iP~n 170 (561)
T KOG1184|consen 143 EDAPEQIDKAIRTALKESKPVYIGVPAN 170 (561)
T ss_pred hhhHHHHHHHHHHHHHhcCCeEEEeecc
Confidence 5555555555555555789999998763
No 273
>PRK10490 sensor protein KdpD; Provisional
Probab=37.42 E-value=1.3e+02 Score=33.88 Aligned_cols=93 Identities=11% Similarity=-0.052 Sum_probs=53.4
Q ss_pred CeeEEEeCccccCcchHHHHHHHHHHcCCCEEEE-EEcCCcccccccccccCCcCHHHHHhhcCceEEEEeCCCHHHHHH
Q 016903 166 ACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFI-CRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYS 244 (380)
Q Consensus 166 ~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~v-v~NN~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~VdG~D~~av~~ 244 (380)
++.||+.|. ..++-.+--+..+|...+.|+..| |+............. ...+..++|+.+|.++..+.|.|+.+
T Consensus 252 riLV~v~~~-~~~~~lIr~~~rlA~~~~a~~~~l~V~~~~~~~~~~~~~~-~l~~~~~lA~~lGa~~~~~~~~dva~--- 326 (895)
T PRK10490 252 AILLCIGHN-TGSEKLVRTAARLAARLGSVWHAVYVETPRLHRLPEKKRR-AILSALRLAQELGAETATLSDPAEEK--- 326 (895)
T ss_pred eEEEEECCC-cchHHHHHHHHHHHHhcCCCEEEEEEecCCcCcCCHHHHH-HHHHHHHHHHHcCCEEEEEeCCCHHH---
Confidence 345555554 666677888899999999884443 333322111111111 11123368999999999999998753
Q ss_pred HHHHHHHHhhccCCcEEEEEEe
Q 016903 245 AVHAAREMAIGEGRPILIEALT 266 (380)
Q Consensus 245 a~~~a~~~ar~~~gP~lIe~~t 266 (380)
..+++||..+-..+|--+.
T Consensus 327 ---~i~~~A~~~~vt~IViG~s 345 (895)
T PRK10490 327 ---AVLRYAREHNLGKIIIGRR 345 (895)
T ss_pred ---HHHHHHHHhCCCEEEECCC
Confidence 2234555555444444433
No 274
>PLN02331 phosphoribosylglycinamide formyltransferase
Probab=37.33 E-value=3.2e+02 Score=25.09 Aligned_cols=54 Identities=19% Similarity=0.241 Sum_probs=34.5
Q ss_pred eeEEEeCccccCcchHHHHHHHHHHc-CCC--EEEEEEcCCcccccccccccCCcCHHHHHhhcCceEEEEeCC
Q 016903 167 CAVTYFGDGGTSEGDFHAALNFSAVT-EAP--VIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGN 237 (380)
Q Consensus 167 ~vv~~~GDG~~~eG~~~Eal~~A~~~-~Lp--vi~vv~NN~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~VdG~ 237 (380)
++|.+.|-|+- .+++--+... ++| +++|+.||..+ ...++|+.+|++++.++-.
T Consensus 2 i~vl~Sg~Gsn-----~~al~~~~~~~~l~~~i~~visn~~~~------------~~~~~A~~~gIp~~~~~~~ 58 (207)
T PLN02331 2 LAVFVSGGGSN-----FRAIHDACLDGRVNGDVVVVVTNKPGC------------GGAEYARENGIPVLVYPKT 58 (207)
T ss_pred EEEEEeCCChh-----HHHHHHHHHcCCCCeEEEEEEEeCCCC------------hHHHHHHHhCCCEEEeccc
Confidence 56777777665 3555555443 354 77788887522 2346888899999876543
No 275
>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=37.22 E-value=1.3e+02 Score=24.40 Aligned_cols=18 Identities=11% Similarity=0.296 Sum_probs=11.0
Q ss_pred HHHHHhhcCceEEEEeCC
Q 016903 220 AVVKGRAYGVRSIRVDGN 237 (380)
Q Consensus 220 ~~~~a~a~G~~~~~VdG~ 237 (380)
..+.++..|++++.+.++
T Consensus 65 ~~~~a~~~g~~vi~iT~~ 82 (126)
T cd05008 65 ALRLAKEKGAKTVAITNV 82 (126)
T ss_pred HHHHHHHcCCeEEEEECC
Confidence 455666666666666544
No 276
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=37.20 E-value=1.8e+02 Score=28.24 Aligned_cols=54 Identities=6% Similarity=-0.122 Sum_probs=37.7
Q ss_pred CCCeeEEEeCccccCcchHHHHHHHHHHcC-CC--EEEEEEcCCcccccccccccCCcCHHHHHhhcCceEEEEeC
Q 016903 164 KDACAVTYFGDGGTSEGDFHAALNFSAVTE-AP--VIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDG 236 (380)
Q Consensus 164 ~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~-Lp--vi~vv~NN~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~VdG 236 (380)
+.+++|.+.|-|+. .+++-.+...+ || ++.|+.||. +..++|+.+|+|++.++-
T Consensus 93 ~~kiavl~Sg~g~n-----l~al~~~~~~~~l~~~i~~visn~~--------------~~~~~A~~~gIp~~~~~~ 149 (289)
T PRK13010 93 RPKVVIMVSKFDHC-----LNDLLYRWRMGELDMDIVGIISNHP--------------DLQPLAVQHDIPFHHLPV 149 (289)
T ss_pred CeEEEEEEeCCCcc-----HHHHHHHHHCCCCCcEEEEEEECCh--------------hHHHHHHHcCCCEEEeCC
Confidence 34677777887665 35566666543 44 888888873 345889999999998764
No 277
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=36.27 E-value=3e+02 Score=26.59 Aligned_cols=54 Identities=9% Similarity=0.046 Sum_probs=35.8
Q ss_pred CCCeeEEEeCccccCcchHHHHHHHHHHc-CC--CEEEEEEcCCcccccccccccCCcCHHHHHhhcCceEEEEeC
Q 016903 164 KDACAVTYFGDGGTSEGDFHAALNFSAVT-EA--PVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDG 236 (380)
Q Consensus 164 ~~~~vv~~~GDG~~~eG~~~Eal~~A~~~-~L--pvi~vv~NN~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~VdG 236 (380)
+.+++|+..|.|+. .++|--+... ++ -|+.|+.|+. +...+|+.+|+|++.++-
T Consensus 89 ~~ri~vl~Sg~gsn-----l~al~~~~~~~~~~~~i~~visn~~--------------~~~~lA~~~gIp~~~~~~ 145 (286)
T PRK06027 89 RKRVVILVSKEDHC-----LGDLLWRWRSGELPVEIAAVISNHD--------------DLRSLVERFGIPFHHVPV 145 (286)
T ss_pred CcEEEEEEcCCCCC-----HHHHHHHHHcCCCCcEEEEEEEcCh--------------hHHHHHHHhCCCEEEecc
Confidence 44677777777654 4555555443 34 4777777763 355679999999998763
No 278
>PRK05647 purN phosphoribosylglycinamide formyltransferase; Reviewed
Probab=36.04 E-value=2e+02 Score=26.21 Aligned_cols=57 Identities=18% Similarity=0.257 Sum_probs=34.8
Q ss_pred CeeEEEeCccccCcchHHHHHHHHHHcCCC--EEEEEEcCCcccccccccccCCcCHHHHHhhcCceEEEEeCCC
Q 016903 166 ACAVTYFGDGGTSEGDFHAALNFSAVTEAP--VIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGND 238 (380)
Q Consensus 166 ~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lp--vi~vv~NN~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~VdG~D 238 (380)
+++|.+.|+|+..+. +.++ ...-.++ |++||.|+.- ....++|+..|+|+..++-.+
T Consensus 3 ki~vl~sg~gs~~~~-ll~~---~~~~~~~~~I~~vvs~~~~------------~~~~~~a~~~gIp~~~~~~~~ 61 (200)
T PRK05647 3 RIVVLASGNGSNLQA-IIDA---CAAGQLPAEIVAVISDRPD------------AYGLERAEAAGIPTFVLDHKD 61 (200)
T ss_pred eEEEEEcCCChhHHH-HHHH---HHcCCCCcEEEEEEecCcc------------chHHHHHHHcCCCEEEECccc
Confidence 478889999887542 2222 2223344 6666666531 124578899999999876433
No 279
>PRK05772 translation initiation factor IF-2B subunit alpha; Provisional
Probab=35.96 E-value=2e+02 Score=28.90 Aligned_cols=118 Identities=16% Similarity=0.022 Sum_probs=58.9
Q ss_pred cCcccc--cchHHHHHHHHHhhhcCCCCeeEEEeCccc-cCcchHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCC
Q 016903 141 VSSTIA--TQLPHAVGAAYALKMDRKDACAVTYFGDGG-TSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRS 217 (380)
Q Consensus 141 ~~g~lG--~~lp~A~G~A~A~k~~~~~~~vv~~~GDG~-~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~~~~~~~~~~~~ 217 (380)
++|++. .+.+-|+|.-+..+.++..-.|+|. +.- ..||.-. ...-....++|+.+|++|--..+. +....
T Consensus 175 nsg~Lat~~g~gtal~~i~~a~~~gk~f~V~v~--EsRP~~qG~rl-ta~eL~~~GIpvtlI~Dsa~~~~m-~~~~V--- 247 (363)
T PRK05772 175 NAGGLATGTGLGTALAPVKLAKALGMSVSVIAP--ETRPWLQGSRL-TVYELMEEGIKVTLITDTAVGLVM-YKDMV--- 247 (363)
T ss_pred CCcchhhccccccHHHHHHHHHHCCCeEEEEEC--CCCccchhHHH-HHHHHHHCCCCEEEEehhHHHHHH-hhcCC---
Confidence 345553 4556677765555544444444443 433 2456311 112234578999988876532221 11000
Q ss_pred cCHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCCCC
Q 016903 218 DGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHH 272 (380)
Q Consensus 218 ~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t~R~~gH 272 (380)
| .--.|.+.+..||.-...+ .+..-|+ -|+..+.|+++-+.++.+...
T Consensus 248 -d----~VivGAD~I~~NG~v~NKi-GTy~lA~-~Ak~~~vPfyV~ap~~k~d~~ 295 (363)
T PRK05772 248 -N----NVMVGADRILRDGHVFNKI-GTFKEAV-IAHELGIPFYALAPTSTFDLK 295 (363)
T ss_pred -C----EEEECccEEecCCCEeehh-hhHHHHH-HHHHhCCCEEEEccccccCcc
Confidence 0 0114777777777322221 1122222 233468999999988776543
No 280
>PRK09404 sucA 2-oxoglutarate dehydrogenase E1 component; Reviewed
Probab=35.71 E-value=2.7e+02 Score=31.64 Aligned_cols=107 Identities=7% Similarity=0.019 Sum_probs=62.3
Q ss_pred cchHHHHHHHHHhhhcCCCC--eeEEEeCcccc-CcchHHHHHHHH-HHcCC--CEEEEEEcCCcccccccccccCCcCH
Q 016903 147 TQLPHAVGAAYALKMDRKDA--CAVTYFGDGGT-SEGDFHAALNFS-AVTEA--PVIFICRNNGWAISTPISDQFRSDGA 220 (380)
Q Consensus 147 ~~lp~A~G~A~A~k~~~~~~--~vv~~~GDG~~-~eG~~~Eal~~A-~~~~L--pvi~vv~NN~~~~~~~~~~~~~~~~~ 220 (380)
+-++.++|+|+. ++.. ++=.-+||=+. .|-.+-+-++.+ +.|+. ++|+.+-.. |...++...+. .+
T Consensus 656 ~~~G~~~G~a~~----g~~~l~i~E~qfgDF~~~AQ~~~Dq~i~~~~~k~~~~sglv~~~p~G-~~g~g~~hsS~---~~ 727 (924)
T PRK09404 656 AVLGFEYGYSTA----EPNTLVIWEAQFGDFANGAQVVIDQFISSGEQKWGRLSGLVMLLPHG-YEGQGPEHSSA---RL 727 (924)
T ss_pred HHHHHHHHHHhc----CCCCceEEEEeccccccchHHHHHHHHHHHHHHhcCccCeEEEecCc-CCCCChhhhcc---CH
Confidence 345567777664 5554 44456666544 122355666775 67764 766655444 55444433322 23
Q ss_pred HHHHhhc---CceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEE
Q 016903 221 VVKGRAY---GVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEAL 265 (380)
Q Consensus 221 ~~~a~a~---G~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~ 265 (380)
......+ ||.++... .+.+.+..++.++- |..++|+++--.
T Consensus 728 E~~l~~~~~~gl~Vv~ps--tpad~~~lLr~q~~--r~~r~Pvv~~~p 771 (924)
T PRK09404 728 ERFLQLCAEDNMQVCNPT--TPAQYFHLLRRQAL--RPFRKPLVVMTP 771 (924)
T ss_pred HHHHHhCCCCCCEEEecC--CHHHHHHHHHHHHh--hCCCCCEEEecc
Confidence 3333333 88888777 88888888887643 244589887543
No 281
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=35.68 E-value=2.1e+02 Score=27.24 Aligned_cols=71 Identities=17% Similarity=0.193 Sum_probs=36.9
Q ss_pred EEEeCcccc--CcchHHHHHHHHHHc---CCCEEEEEEcCCccc-c--------cc-ccccc-CCc---CHHHHHhhcCc
Q 016903 169 VTYFGDGGT--SEGDFHAALNFSAVT---EAPVIFICRNNGWAI-S--------TP-ISDQF-RSD---GAVVKGRAYGV 229 (380)
Q Consensus 169 v~~~GDG~~--~eG~~~Eal~~A~~~---~Lpvi~vv~NN~~~~-~--------~~-~~~~~-~~~---~~~~~a~a~G~ 229 (380)
|.|--||+. +.|.+.-++.+|..+ +-.++|+|.+..-.. . .. ..... ... .+.+..+.++.
T Consensus 2 i~ir~Da~~~iG~GHv~Rcl~LA~~l~~~g~~v~f~~~~~~~~~~~~i~~~g~~v~~~~~~~~~~~d~~~~~~~l~~~~~ 81 (279)
T TIGR03590 2 ILFRADASSEIGLGHVMRCLTLARALHAQGAEVAFACKPLPGDLIDLLLSAGFPVYELPDESSRYDDALELINLLEEEKF 81 (279)
T ss_pred EEEEecCCccccccHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHcCCeEEEecCCCchhhhHHHHHHHHHhcCC
Confidence 345556665 566677777777655 236777776542110 0 00 00000 001 24455666677
Q ss_pred eEEEEeCCCH
Q 016903 230 RSIRVDGNDA 239 (380)
Q Consensus 230 ~~~~VdG~D~ 239 (380)
..+.+|+-+.
T Consensus 82 d~vV~D~y~~ 91 (279)
T TIGR03590 82 DILIVDHYGL 91 (279)
T ss_pred CEEEEcCCCC
Confidence 7888886543
No 282
>PF06945 DUF1289: Protein of unknown function (DUF1289); InterPro: IPR010710 This family consists of a number of hypothetical bacterial proteins. The aligned region spans around 56 residues and contains 4 highly conserved cysteine residues towards the N terminus. The function of this family is unknown.
Probab=35.53 E-value=58 Score=22.94 Aligned_cols=30 Identities=20% Similarity=0.195 Sum_probs=17.9
Q ss_pred cEEEEEEeecCCCCCCCCCCCCCCChhhHHHHHh
Q 016903 259 PILIEALTYRVGHHTTSDDSTKYRPVDEIEWWRT 292 (380)
Q Consensus 259 P~lIe~~t~R~~gHs~~Dd~~~Yr~~~e~~~~~~ 292 (380)
|++=.+.+....|+-.+ =||+.+|+..|..
T Consensus 3 PCi~vC~~d~~~~~C~G----C~RT~dEI~~W~~ 32 (51)
T PF06945_consen 3 PCIGVCKLDPSDGVCRG----CGRTLDEIRDWKS 32 (51)
T ss_pred CCccccccCCCCCccCC----CCCcHHHHHHHhh
Confidence 44444544333333332 2799999999973
No 283
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=34.57 E-value=65 Score=29.39 Aligned_cols=38 Identities=24% Similarity=0.371 Sum_probs=32.8
Q ss_pred cCChHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH
Q 016903 293 TQDPVTRFRKWIESNGWWNGDIESELRSSVRKQILHALQ 331 (380)
Q Consensus 293 ~~DPi~~~~~~L~~~g~~t~~e~~~i~~~~~~~v~~a~~ 331 (380)
.+|=+.+++++|.+.| .++++.+++-.|+-.++.+|.+
T Consensus 6 N~~y~~~l~~~L~~~~-~~e~~~e~~L~eil~~LleaQk 43 (206)
T PF06570_consen 6 NQEYIFDLRKYLRSSG-VSEEEIEELLEEILPHLLEAQK 43 (206)
T ss_pred HHHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHHHHHh
Confidence 4677888999998877 5999999999999999998865
No 284
>cd08323 CARD_APAF1 Caspase activation and recruitment domain similar to that found in Apoptotic Protease-Activating Factor 1. Caspase activation and recruitment domain (CARD) similar to that found in apoptotic protease-activating factor 1 (APAF-1), which is an activator of caspase-9. APAF-1 contains WD-40 repeats, a CARD, and an ATPase domain. Upon stimulation, APAF-1, together with caspase-9, forms the heptameric 'apoptosome', which leads to the processing and activation of caspase-9, starting a caspase cascade which leads to apoptosis. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and DED (Death Effect
Probab=34.53 E-value=45 Score=26.29 Aligned_cols=28 Identities=18% Similarity=0.210 Sum_probs=23.3
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 016903 297 VTRFRKWIESNGWWNGDIESELRSSVRK 324 (380)
Q Consensus 297 i~~~~~~L~~~g~~t~~e~~~i~~~~~~ 324 (380)
+..+-.+|+++|++|+++.+.|+++-..
T Consensus 16 v~~ild~L~~~gvlt~~~~e~I~~~~t~ 43 (86)
T cd08323 16 TSYIMDHMISDGVLTLDEEEKVKSKATQ 43 (86)
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHcCCCh
Confidence 4558899999999999999999876543
No 285
>TIGR03186 AKGDH_not_PDH alpha-ketoglutarate dehydrogenase. Several bacterial species have a paralog to homodimeric form of the pyruvate dehydrogenase E1 component (see model TIGR00759), often encoded next to L-methionine gamma-lyase gene (mdeA). The member from a strain of Pseudomonas putida was shown to act on alpha-ketobutyrate, which is produced by MdeA.This model serves as an exception model to TIGR00759, as other proteins hitting TIGR00759 should be identified as the pyruvate dehydrogenase E1 component.
Probab=34.18 E-value=3.5e+02 Score=30.68 Aligned_cols=122 Identities=11% Similarity=-0.019 Sum_probs=72.2
Q ss_pred CccccCcccccchH---HHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCc-ccccccc
Q 016903 137 NYFTVSSTIATQLP---HAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGW-AISTPIS 212 (380)
Q Consensus 137 ~~~~~~g~lG~~lp---~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~-~~~~~~~ 212 (380)
+=+...|+-.+++- +|.|.|++.. +...+++ ++.=+.|...-.+|-+..++..++++++|...-+. .......
T Consensus 560 ~R~ie~GIAEqnmv~~~iAAGlA~a~~--G~g~iPf-~~tya~F~~~Ra~Dqir~a~~~~a~v~lvG~~aG~tTlg~eG~ 636 (889)
T TIGR03186 560 GQILEEGISEAGAISSWIAAATSYSVH--DLPMLPF-YIYYSMFGFQRIGDLIWAAADQRARGFLIGATSGKTTLGGEGL 636 (889)
T ss_pred CcEEEechhhHHHHHHHHHHHHhhhhc--CCCceEE-EEehHHhHhhhHHHHHHHHhhcCCCcEEEEECCCccCCCCCcc
Confidence 33445566666555 5778777642 2222232 23334554445678899998888999999987765 3332222
Q ss_pred cccCCcCHHHHHhhcCceEEE-EeCCCHHHHHHHHHHHHHHhhcc--CCcEEEEE
Q 016903 213 DQFRSDGAVVKGRAYGVRSIR-VDGNDALAIYSAVHAAREMAIGE--GRPILIEA 264 (380)
Q Consensus 213 ~~~~~~~~~~~a~a~G~~~~~-VdG~D~~av~~a~~~a~~~ar~~--~gP~lIe~ 264 (380)
. ..++.+.+-+-.+|... ++--|..++..+++.+++++-.. ++|+.|-+
T Consensus 637 t---Hq~~eDial~r~iPn~tv~~PaDa~E~a~iv~~~~~rm~~~~~~gp~YlRl 688 (889)
T TIGR03186 637 Q---HQDGTSHLAASTVPNCRAWDPAFAYEVAVIVDEGMREMLERQRDEFYYLTV 688 (889)
T ss_pred c---ccchHhHHHHhhCCCCEEEeCCCHHHHHHHHHHHHHHHHhcCCCceEEEEe
Confidence 2 22344444444555443 45558888888898888744443 47777644
No 286
>PF01738 DLH: Dienelactone hydrolase family; InterPro: IPR002925 Dienelactone hydrolases play a crucial role in chlorocatechol degradation via the modified ortho cleavage pathway. Enzymes induced in 4-fluorobenzoate-utilizing bacteria have been classified into three groups on the basis of their specificity towards cis- and trans-dienelactone []. Some proteins contain repeated small fragments of this domain (for example rat kan-1 protein).; GO: 0016787 hydrolase activity; PDB: 1GGV_A 1ZIY_A 1ZI6_A 1ZIC_A 1ZJ5_A 1ZI8_A 1ZJ4_A 1ZI9_A 1ZIX_A 3F67_A.
Probab=34.13 E-value=2.4e+02 Score=25.18 Aligned_cols=55 Identities=16% Similarity=0.274 Sum_probs=26.0
Q ss_pred CcccccchHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEc
Q 016903 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRN 202 (380)
Q Consensus 142 ~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~N 202 (380)
.+.+|.+.+-.+.+-+|.+. ..=.-++++.| +.... ..+..+...+.|++++.-.
T Consensus 100 ig~vGfc~GG~~a~~~a~~~-~~~~a~v~~yg-~~~~~----~~~~~~~~~~~P~l~~~g~ 154 (218)
T PF01738_consen 100 IGVVGFCWGGKLALLLAARD-PRVDAAVSFYG-GSPPP----PPLEDAPKIKAPVLILFGE 154 (218)
T ss_dssp EEEEEETHHHHHHHHHHCCT-TTSSEEEEES--SSSGG----GHHHHGGG--S-EEEEEET
T ss_pred EEEEEEecchHHhhhhhhhc-cccceEEEEcC-CCCCC----cchhhhcccCCCEeecCcc
Confidence 46777766666555554432 12246777787 21111 1133344455677776643
No 287
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=34.09 E-value=4.4e+02 Score=25.50 Aligned_cols=113 Identities=12% Similarity=0.068 Sum_probs=68.2
Q ss_pred CCeeEEEeCccccCc-c--hHH-HHHHHHHHcCCCEEEEEEcCCcccccccccccCCcCHHHHHhhcCceEEEEeCC--C
Q 016903 165 DACAVTYFGDGGTSE-G--DFH-AALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGN--D 238 (380)
Q Consensus 165 ~~~vv~~~GDG~~~e-G--~~~-Eal~~A~~~~Lpvi~vv~NN~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~VdG~--D 238 (380)
+.+++.-+..+.+.. | .++ -...+|...++||.+-.+-- . ..+...+|-..|+.++-+||. +
T Consensus 42 ~sPvIl~~~~~~~~~~g~~~~~~~~~~~A~~~~vPV~lHLDH~-----------~-~~e~i~~Ai~~GftSVM~DgS~l~ 109 (283)
T PRK07998 42 GLPNFIQIAPTNAQLSGYDYIYEIVKRHADKMDVPVSLHLDHG-----------K-TFEDVKQAVRAGFTSVMIDGAALP 109 (283)
T ss_pred CCCEEEECcHhHHhhCCHHHHHHHHHHHHHHCCCCEEEECcCC-----------C-CHHHHHHHHHcCCCEEEEeCCCCC
Confidence 456777666666522 2 112 12334566788977665411 0 122345566679999999984 4
Q ss_pred HHHHHHHHHHHHHHhhccCCcEEEEEEeecCCCCCCC--CCCCCCCChhhHHHHH
Q 016903 239 ALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTS--DDSTKYRPVDEIEWWR 291 (380)
Q Consensus 239 ~~av~~a~~~a~~~ar~~~gP~lIe~~t~R~~gHs~~--Dd~~~Yr~~~e~~~~~ 291 (380)
.++=.+..++.++.|+..+-| ||+..-+.+|-... ++...|.++++..++-
T Consensus 110 ~eeNi~~T~~vve~Ah~~gv~--VEaElG~vgg~ed~~~~~~~~~T~pe~a~~Fv 162 (283)
T PRK07998 110 FEENIAFTKEAVDFAKSYGVP--VEAELGAILGKEDDHVSEADCKTEPEKVKDFV 162 (283)
T ss_pred HHHHHHHHHHHHHHHHHcCCE--EEEEeccCCCccccccccccccCCHHHHHHHH
Confidence 455566677888887776544 77777666654321 1134588999887774
No 288
>COG0108 RibB 3,4-dihydroxy-2-butanone 4-phosphate synthase [Coenzyme metabolism]
Probab=34.01 E-value=1.4e+02 Score=27.51 Aligned_cols=68 Identities=21% Similarity=0.302 Sum_probs=51.2
Q ss_pred hcCCCCeeEEEeCcccc--CcchHHHHHHHHHHcCC-CEEEEEE--cCCcccccccccccCCcCHHHHHhhcCceEEEEe
Q 016903 161 MDRKDACAVTYFGDGGT--SEGDFHAALNFSAVTEA-PVIFICR--NNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVD 235 (380)
Q Consensus 161 ~~~~~~~vv~~~GDG~~--~eG~~~Eal~~A~~~~L-pvi~vv~--NN~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~Vd 235 (380)
+..|+++.....=||.+ ..|..--++.+|..-+| |.-+||+ |.. ....+.+++.+.|+-+|++.+++.
T Consensus 120 f~~PGHVfpL~A~~ggVl~R~GHTEasVdLarlAGl~Pa~VicEi~~~d-------G~mar~~~~~~fa~~h~l~~iti~ 192 (203)
T COG0108 120 FRRPGHVFPLRAKDGGVLERRGHTEAAVDLARLAGLKPAGVICEIMNDD-------GTMARLPELEEFAKEHGLPVITIE 192 (203)
T ss_pred cCCCCCeeeeeeccCCeeccCChHHHHHHHHHHcCCCCcEEEEEEeCCC-------ccccChHHHHHHHHHcCCcEEEHH
Confidence 34577788888888877 57888888999999999 8777776 321 122334667889999999999876
No 289
>PRK06381 threonine synthase; Validated
Probab=32.87 E-value=3.4e+02 Score=26.24 Aligned_cols=57 Identities=23% Similarity=0.239 Sum_probs=35.0
Q ss_pred HHHHcCCCEEEEEEcCCcccccccccccCCcCHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEE
Q 016903 188 FSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPIL 261 (380)
Q Consensus 188 ~A~~~~Lpvi~vv~NN~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~l 261 (380)
.|+..++|+++++..+. ...-.+..++||.+++.+++. .. ++...+.+.++. ++..+
T Consensus 81 ~aa~~G~~~~ivvp~~~------------~~~~~~~l~~~GA~V~~~~~~-~~---~~~~~a~~~~~~-~~~~~ 137 (319)
T PRK06381 81 FARLYGLKAVIFIPRSY------------SNSRVKEMEKYGAEIIYVDGK-YE---EAVERSRKFAKE-NGIYD 137 (319)
T ss_pred HHHHcCCcEEEEECCCC------------CHHHHHHHHHcCCEEEEcCCC-HH---HHHHHHHHHHHH-cCcEe
Confidence 45678999888886431 112346788999999999874 32 334444444443 34443
No 290
>PF14399 Transpep_BrtH: NlpC/p60-like transpeptidase
Probab=32.69 E-value=2.4e+02 Score=26.90 Aligned_cols=45 Identities=13% Similarity=0.169 Sum_probs=37.4
Q ss_pred HHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeec
Q 016903 220 AVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 268 (380)
Q Consensus 220 ~~~~a~a~G~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t~R 268 (380)
+...++.+|+++......++++..+.+++.++ .+.|++|-+.+|=
T Consensus 55 ~~~~~~~lG~~~~~~~~~~~~~~~~~l~~~l~----~g~pv~~~~D~~~ 99 (317)
T PF14399_consen 55 EENLLERLGIKYEWREFSSPDEAWEELKEALD----AGRPVIVWVDMYY 99 (317)
T ss_pred HHHHHHHCCceEEEEecCCHHHHHHHHHHHHh----CCCceEEEecccc
Confidence 44677889999998888899999999999987 3679999988753
No 291
>smart00115 CASc Caspase, interleukin-1 beta converting enzyme (ICE) homologues. Cysteine aspartases that mediate programmed cell death (apoptosis). Caspases are synthesised as zymogens and activated by proteolysis of the peptide backbone adjacent to an aspartate. The resulting two subunits associate to form an (alpha)2(beta)2-tetramer which is the active enzyme. Activation of caspases can be mediated by other caspase homologues.
Probab=32.58 E-value=1.5e+02 Score=27.69 Aligned_cols=69 Identities=9% Similarity=0.036 Sum_probs=45.1
Q ss_pred CEEEEEEcCCccccccccccc--CCcCHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEE
Q 016903 195 PVIFICRNNGWAISTPISDQF--RSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEA 264 (380)
Q Consensus 195 pvi~vv~NN~~~~~~~~~~~~--~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~ 264 (380)
.+.+||.|..|.-. +..... ....+.+.++.+|+.+....--+..++.+++++..+.....+..+++-+
T Consensus 9 g~alII~n~~f~~~-~~r~g~~~D~~~l~~~f~~lgF~V~~~~dlt~~em~~~l~~~~~~~~~~~~d~~v~~ 79 (241)
T smart00115 9 GLALIINNENFHSL-PRRNGTDVDAENLTELFQSLGYEVHVKNNLTAEEMLEELKEFAERPEHSDSDSFVCV 79 (241)
T ss_pred cEEEEEECccCCCC-cCCCCcHHHHHHHHHHHHHCCCEEEEecCCCHHHHHHHHHHHHhccccCCCCEEEEE
Confidence 47788888887521 111111 1235778889999999998877888999999887653222345566655
No 292
>cd08325 CARD_CASP1-like Caspase activation and recruitment domain found in Caspase-1 and related proteins. Caspase activation and recruitment domain (CARD) similar to those found in Caspase-1 (CASP1, ICE) and related proteins, including CARD-only proteins such as ICEBERG or CARD18, INCA (CARD17), CARD16 (COP1, PSEUDO-ICE), CARD8 (DACAR, NDPP1, TUCAN), and CARD12 (NLRC4), as well as ICE-like caspases such as CASP12, CASP5 (ICH-3) and CASP4 (TX, ICH-2). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. CASP1 plays a central role in the cellular response to a wide variety of microbial and non-microbial stimuli, being activated by the inflammasome or the pyroptosome. CARD8 binds itself and the initiator caspase-9, interfering with the binding of APAF-1 and suppressing caspase-9 activation. CARD12 is a Nod-like receptor (NLR) that plays an important role in the innate immune response to Gram-negative bacteria. Caspase-4 (CASP4), -5 (CASP5),
Probab=31.86 E-value=75 Score=24.71 Aligned_cols=40 Identities=5% Similarity=-0.036 Sum_probs=30.8
Q ss_pred CChHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 016903 294 QDPVTRFRKWIESNGWWNGDIESELRSSVRKQILHALQEA 333 (380)
Q Consensus 294 ~DPi~~~~~~L~~~g~~t~~e~~~i~~~~~~~v~~a~~~a 333 (380)
++-|.-+-..|.+.++++++|.+.|.++-....++|....
T Consensus 15 ~~~i~~llD~Ll~~~Vl~~~E~e~i~~~~~t~~dkar~Li 54 (83)
T cd08325 15 KGVINGLLDDLLEKNVLNEEEMEKIKEENNTIMDKARVLV 54 (83)
T ss_pred HhhHHHHHHHHHHcCCCCHHHHHHHHhccCCHHHHHHHHH
Confidence 5677778899999999999999999887544555554433
No 293
>PF08312 cwf21: cwf21 domain; InterPro: IPR013170 The cwf21 domain is found in proteins involved in mRNA splicing. Proteins containing this domain have been isolated as a subcomplex of the splicosome in Schizosaccharomyces pombe (Fission yeast) []. In yeast, this domain binds the protein Prp8p [], a large and highly conserved U5 snRNP protein which has been proposed as a protein cofactor at the spliceosomal catalytic centre []. The cwf21 domain is found in, amongst others, the small Cwc21p protein in yeast as well as in the much larger human ortholog SRm300 (serine/arginine repetitive matrix protein). ; PDB: 2E62_A.
Probab=31.38 E-value=1.3e+02 Score=20.89 Aligned_cols=30 Identities=23% Similarity=0.404 Sum_probs=22.9
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Q 016903 298 TRFRKWIESNGWWNGDIESELRSSVRKQILH 328 (380)
Q Consensus 298 ~~~~~~L~~~g~~t~~e~~~i~~~~~~~v~~ 328 (380)
..|+..|.+.|+ +++++++--++.++.+.+
T Consensus 14 ~elrd~LEe~g~-~~eeIe~kv~~~R~~L~~ 43 (46)
T PF08312_consen 14 LELRDELEEQGY-SEEEIEEKVDELRKKLLE 43 (46)
T ss_dssp HHHHHHHHHHT---HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCC-CHHHHHHHHHHHHHHHHh
Confidence 358999999997 999998888888877654
No 294
>cd05009 SIS_GlmS_GlmD_2 SIS (Sugar ISomerase) domain repeat 2 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=31.14 E-value=1.3e+02 Score=25.21 Aligned_cols=38 Identities=13% Similarity=0.128 Sum_probs=20.4
Q ss_pred CCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcC
Q 016903 165 DACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN 203 (380)
Q Consensus 165 ~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN 203 (380)
+..++.+.++|+..+ ...+.+..+...+.|+|.|..++
T Consensus 62 ~~~vi~is~~g~t~~-~~~~~~~~~~~~~~~vi~it~~~ 99 (153)
T cd05009 62 GTPVIFLAPEDRLEE-KLESLIKEVKARGAKVIVITDDG 99 (153)
T ss_pred CCcEEEEecCChhHH-HHHHHHHHHHHcCCEEEEEecCC
Confidence 445666666664421 13445555556666666665543
No 295
>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed
Probab=30.70 E-value=5.1e+02 Score=25.13 Aligned_cols=113 Identities=15% Similarity=0.122 Sum_probs=71.7
Q ss_pred CCeeEEEeCccccCcchHHH----HHHHHHHcCCCEEEEEEcCCcccccccccccCCcCHHHHHhhcCceEEEEeCC--C
Q 016903 165 DACAVTYFGDGGTSEGDFHA----ALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGN--D 238 (380)
Q Consensus 165 ~~~vv~~~GDG~~~eG~~~E----al~~A~~~~Lpvi~vv~NN~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~VdG~--D 238 (380)
+.++|.-+..|.+....... ...+|...+.||.+-++--. ..+...+|-..|+.++-+||. +
T Consensus 42 ~sPvIlq~s~~~~~~~~~~~~~~~~~~~a~~~~VPValHLDHg~------------~~e~i~~ai~~GFtSVM~DgS~lp 109 (286)
T PRK12738 42 RSPVILAGTPGTFKHIALEEIYALCSAYSTTYNMPLALHLDHHE------------SLDDIRRKVHAGVRSAMIDGSHFP 109 (286)
T ss_pred CCCEEEEcCcchhhhCCHHHHHHHHHHHHHHCCCCEEEECCCCC------------CHHHHHHHHHcCCCeEeecCCCCC
Confidence 45788888888874322222 22335567788876554211 123445666679999999984 5
Q ss_pred HHHHHHHHHHHHHHhhccCCcEEEEEEeecCCCCCCC----CCCCCCCChhhHHHHH
Q 016903 239 ALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTS----DDSTKYRPVDEIEWWR 291 (380)
Q Consensus 239 ~~av~~a~~~a~~~ar~~~gP~lIe~~t~R~~gHs~~----Dd~~~Yr~~~e~~~~~ 291 (380)
.++=.+..++.+++|+..+ +-||+..-+.+|-... ++...|.+++|..++-
T Consensus 110 ~eeNi~~T~evv~~Ah~~g--v~VEaElG~igg~ed~~~~~~~~~~~T~peea~~Fv 164 (286)
T PRK12738 110 FAENVKLVKSVVDFCHSQD--CSVEAELGRLGGVEDDMSVDAESAFLTDPQEAKRFV 164 (286)
T ss_pred HHHHHHHHHHHHHHHHHcC--CeEEEEEEeeCCccCCcccccchhcCCCHHHHHHHH
Confidence 5666677788888877654 6778887777653211 1123598999887774
No 296
>TIGR00515 accD acetyl-CoA carboxylase, carboxyl transferase, beta subunit. The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the beta chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.
Probab=30.60 E-value=95 Score=30.13 Aligned_cols=23 Identities=17% Similarity=0.294 Sum_probs=18.6
Q ss_pred HHHHHHHHcCCCEEEEEEcCCcc
Q 016903 184 AALNFSAVTEAPVIFICRNNGWA 206 (380)
Q Consensus 184 Eal~~A~~~~Lpvi~vv~NN~~~ 206 (380)
.++.+|...++|+|++++..+..
T Consensus 146 r~~e~A~~~~lPlV~l~dSgGaR 168 (285)
T TIGR00515 146 RAIEKALEDNCPLIIFSASGGAR 168 (285)
T ss_pred HHHHHHHHcCCCEEEEEcCCCcc
Confidence 45778888999999999887764
No 297
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=30.54 E-value=56 Score=25.57 Aligned_cols=35 Identities=17% Similarity=0.146 Sum_probs=25.3
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 016903 298 TRFRKWIESNGWWNGDIESELRSSVRKQILHALQEA 333 (380)
Q Consensus 298 ~~~~~~L~~~g~~t~~e~~~i~~~~~~~v~~a~~~a 333 (380)
..+..+|+++|++|.++.+.|++.-.. -+++.+.-
T Consensus 19 ~~v~~~L~~~~Vlt~~~~e~I~~~~tr-~~q~~~LL 53 (84)
T cd08326 19 KYLWDHLLSRGVFTPDMIEEIQAAGSR-RDQARQLL 53 (84)
T ss_pred HHHHHHHHhcCCCCHHHHHHHHcCCCH-HHHHHHHH
Confidence 457899999999999999999874433 34444333
No 298
>TIGR00655 PurU formyltetrahydrofolate deformylase. This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.
Probab=30.29 E-value=3e+02 Score=26.50 Aligned_cols=54 Identities=7% Similarity=0.035 Sum_probs=36.3
Q ss_pred CCCeeEEEeCccccCcchHHHHHHHHHHcC-CC--EEEEEEcCCcccccccccccCCcCHHHHHhhcCceEEEEeC
Q 016903 164 KDACAVTYFGDGGTSEGDFHAALNFSAVTE-AP--VIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDG 236 (380)
Q Consensus 164 ~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~-Lp--vi~vv~NN~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~VdG 236 (380)
+.+++|...|-|+. .+++--+...+ || ++.|+.||. +...+|+.+|+|++.++-
T Consensus 84 ~~ki~vl~Sg~g~n-----l~~l~~~~~~g~l~~~i~~visn~~--------------~~~~~A~~~gIp~~~~~~ 140 (280)
T TIGR00655 84 LKRVAILVSKEDHC-----LGDLLWRWYSGELDAEIALVISNHE--------------DLRSLVERFGIPFHYIPA 140 (280)
T ss_pred CcEEEEEEcCCChh-----HHHHHHHHHcCCCCcEEEEEEEcCh--------------hHHHHHHHhCCCEEEcCC
Confidence 34567777776655 35555555543 44 888887773 344578999999998874
No 299
>cd01987 USP_OKCHK USP domain is located between the N-terminal sensor domain and C-terminal catalytic domain of this Osmosensitive K+ channel histidine kinase family. The family of KdpD sensor kinase proteins regulates the kdpFABC operon responsible for potassium transport. The USP domain is homologous to the universal stress protein Usp Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity.
Probab=30.04 E-value=2.5e+02 Score=22.33 Aligned_cols=64 Identities=14% Similarity=0.147 Sum_probs=32.0
Q ss_pred ccCcchHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCcCHHHHHhhcCceEEEEeCCCH
Q 016903 176 GTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDA 239 (380)
Q Consensus 176 ~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~VdG~D~ 239 (380)
..++-.+..+.++|..++-++.++-..+.-..............+.+.++..+.+...+.+.++
T Consensus 10 ~~s~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 73 (124)
T cd01987 10 PNAERLIRRAARLADRLKAPWYVVYVETPRLNRLSEAERRRLAEALRLAEELGAEVVTLPGDDV 73 (124)
T ss_pred cchHHHHHHHHHHHHHhCCCEEEEEEecCccccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCcH
Confidence 3344455666777777777644433322211000000001112344667778888877777665
No 300
>PRK07668 hypothetical protein; Validated
Probab=29.89 E-value=87 Score=29.90 Aligned_cols=39 Identities=5% Similarity=0.130 Sum_probs=33.2
Q ss_pred cCChHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHH
Q 016903 293 TQDPVTRFRKWIESNGWWNGDIESELRSSVRKQILHALQE 332 (380)
Q Consensus 293 ~~DPi~~~~~~L~~~g~~t~~e~~~i~~~~~~~v~~a~~~ 332 (380)
.+|=+..++.+|...| .+++|.+++..|...++.++.+.
T Consensus 6 Neefl~~L~~yL~~~g-lseeeieeiL~Ei~~hLlEgQk~ 44 (254)
T PRK07668 6 GRKFLDDTRVYLIAKG-IKEEDIESFLEDAELHLIEGEKD 44 (254)
T ss_pred HHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHHHHHc
Confidence 3567788999999988 59999999999999998888663
No 301
>PLN02522 ATP citrate (pro-S)-lyase
Probab=29.66 E-value=2.5e+02 Score=30.30 Aligned_cols=86 Identities=14% Similarity=0.094 Sum_probs=52.9
Q ss_pred CCCeeEEEeCc-cccCcchHHHHHHHHHHcCCCEEEEEEcCCccc------ccccccccCCcC------HHHHHhhcCce
Q 016903 164 KDACAVTYFGD-GGTSEGDFHAALNFSAVTEAPVIFICRNNGWAI------STPISDQFRSDG------AVVKGRAYGVR 230 (380)
Q Consensus 164 ~~~~vv~~~GD-G~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~~------~~~~~~~~~~~~------~~~~a~a~G~~ 230 (380)
++-.+|++.|+ |.-.+-.|.|++.-+. .+-|||.++---.-.. .+++.. ....+ +.+.++..|+.
T Consensus 221 p~Tk~IvlygEiGg~~e~~f~ea~~~a~-~~KPVVa~kaGrsa~~~~~~aa~gHtGA-iag~~~~ta~~k~aAlr~aGv~ 298 (608)
T PLN02522 221 PQIKMIVVLGELGGRDEYSLVEALKQGK-VSKPVVAWVSGTCARLFKSEVQFGHAGA-KSGGDMESAQAKNKALKDAGAI 298 (608)
T ss_pred CCCCEEEEEEecCchhHHHHHHHHHHhc-CCCCEEEEeccCCCccCccccccccccc-cccCCCccHHHHHHHHHHCCCe
Confidence 45679999999 8887766766655444 5679888875332100 001110 11112 44566777875
Q ss_pred EEEEeCCCHHHHHHHHHHHHHHhhc
Q 016903 231 SIRVDGNDALAIYSAVHAAREMAIG 255 (380)
Q Consensus 231 ~~~VdG~D~~av~~a~~~a~~~ar~ 255 (380)
.. + ++.++.++++++++...+
T Consensus 299 vv--~--s~~El~~~~~~~~~~~~~ 319 (608)
T PLN02522 299 VP--T--SFEALEAAIKETFEKLVE 319 (608)
T ss_pred Ee--C--CHHHHHHHHHHHHHHHHh
Confidence 55 4 899999999888875543
No 302
>cd01561 CBS_like CBS_like: This subgroup includes Cystathionine beta-synthase (CBS) and Cysteine synthase. CBS is a unique heme-containing enzyme that catalyzes a pyridoxal 5'-phosphate (PLP)-dependent condensation of serine and homocysteine to give cystathionine. Deficiency of CBS leads to homocystinuria, an inherited disease of sulfur metabolism characterized by increased levels of the toxic metabolite homocysteine. Cysteine synthase on the other hand catalyzes the last step of cysteine biosynthesis. This subgroup also includes an O-Phosphoserine sulfhydrylase found in hyperthermophilic archaea which produces L-cysteine from sulfide and the more thermostable O-phospho-L-serine.
Probab=29.18 E-value=5e+02 Score=24.61 Aligned_cols=39 Identities=18% Similarity=0.118 Sum_probs=27.5
Q ss_pred HHHHcCCCEEEEEEcCCcccccccccccCCcCHHHHHhhcCceEEEEeCCC
Q 016903 188 FSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGND 238 (380)
Q Consensus 188 ~A~~~~Lpvi~vv~NN~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~VdG~D 238 (380)
.|..+++|+++++..+- ...-.+..+.||.+++.+++..
T Consensus 71 ~a~~~G~~~~i~vp~~~------------~~~k~~~~~~~Ga~v~~~~~~~ 109 (291)
T cd01561 71 VAAAKGYRFIIVMPETM------------SEEKRKLLRALGAEVILTPEAE 109 (291)
T ss_pred HHHHcCCeEEEEECCCC------------CHHHHHHHHHcCCEEEEeCCCC
Confidence 45678999888886441 1123467788999999999764
No 303
>PLN02880 tyrosine decarboxylase
Probab=29.01 E-value=4.5e+02 Score=27.41 Aligned_cols=69 Identities=20% Similarity=0.260 Sum_probs=44.4
Q ss_pred HHHHHhhcCce-----EEEEe--C---CCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCCCCCCCCCCCCCCChhhHHH
Q 016903 220 AVVKGRAYGVR-----SIRVD--G---NDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDDSTKYRPVDEIEW 289 (380)
Q Consensus 220 ~~~~a~a~G~~-----~~~Vd--G---~D~~av~~a~~~a~~~ar~~~gP~lIe~~t~R~~gHs~~Dd~~~Yr~~~e~~~ 289 (380)
+.+-+.-+|+. .+.+| + .|+.++.+++++..+ ++..|++|.+.. |-+. .
T Consensus 194 v~Kaa~~lGlg~~~v~~Vp~d~~~~~~md~~~L~~~i~~~~~---~g~~p~~vvata----GTT~-------~------- 252 (490)
T PLN02880 194 LQKACQIAGIHPENCRLLKTDSSTNYALAPELLSEAISTDLS---SGLIPFFLCATV----GTTS-------S------- 252 (490)
T ss_pred HHHHHHHcCCCHHHEEEeecCCCcCCcCCHHHHHHHHHHHHH---CCCccEEEEEec----CCCc-------C-------
Confidence 44555556763 45564 2 588888887776654 466788887754 1111 1
Q ss_pred HHhcCChHHHHHHHHHHcCCCC
Q 016903 290 WRTTQDPVTRFRKWIESNGWWN 311 (380)
Q Consensus 290 ~~~~~DPi~~~~~~L~~~g~~t 311 (380)
-..|||..+.+...+.|+|-
T Consensus 253 --GaiDpl~eI~~i~~~~~iwl 272 (490)
T PLN02880 253 --TAVDPLLELGKIAKSNGMWF 272 (490)
T ss_pred --cccCcHHHHHHHHHHcCCEE
Confidence 14789998888888888775
No 304
>KOG0369 consensus Pyruvate carboxylase [Energy production and conversion]
Probab=28.74 E-value=1.4e+02 Score=32.51 Aligned_cols=32 Identities=25% Similarity=0.226 Sum_probs=23.6
Q ss_pred eeEEEeCccccCcchHHHHHHHHHHcCCCEEEEE
Q 016903 167 CAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFIC 200 (380)
Q Consensus 167 ~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv 200 (380)
+.++=--||-.. ...||+.|+..|++||||=-
T Consensus 160 VpvVPGTpgPit--t~~EA~eF~k~yG~PvI~KA 191 (1176)
T KOG0369|consen 160 VPVVPGTPGPIT--TVEEALEFVKEYGLPVIIKA 191 (1176)
T ss_pred CCccCCCCCCcc--cHHHHHHHHHhcCCcEEEee
Confidence 344444566664 37899999999999999754
No 305
>cd08327 CARD_RAIDD Caspase activation and recruitment domain of RIP-associated ICH-1 homologous protein with a death domain. Caspase activation and recruitment domain (CARD) of RAIDD (RIP-associated ICH-1 homologous protein with a death domain), also known as CRADD (Caspase and RIP adaptor). RAIDD is an adaptor protein that together with the p53-inducible protein PIDD and caspase-2, forms the PIDDosome complex, which is required for caspase-2 activation and plays a role in mediating stress-induced apoptosis. RAIDD contains an N-terminal CARD, which interacts with the caspase-2 CARD, and a C-terminal Death domain (DD), which interacts with the DD of PIDD. In general, CARDs are DDs associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodime
Probab=28.71 E-value=61 Score=26.02 Aligned_cols=35 Identities=9% Similarity=0.075 Sum_probs=25.2
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 016903 298 TRFRKWIESNGWWNGDIESELRSSVRKQILHALQEA 333 (380)
Q Consensus 298 ~~~~~~L~~~g~~t~~e~~~i~~~~~~~v~~a~~~a 333 (380)
..+..+|.++|++|+++.+.|+++-.. -+++.+.-
T Consensus 24 ~~v~~~L~~~gIlT~~~~e~I~a~~T~-~~k~~~LL 58 (94)
T cd08327 24 GLVIQYLYQEGILTESHVEEIESQTTS-RRKTMKLL 58 (94)
T ss_pred HHHHHHHHhCCCCCHHHHHHHHccCCh-HHHHHHHH
Confidence 347789999999999999999875433 34444433
No 306
>PF10415 FumaraseC_C: Fumarase C C-terminus; InterPro: IPR018951 Fumarase C catalyses the stereo-specific interconversion of fumarate to L-malate as part of the Krebs cycle. The full-length protein forms a tetramer with visible globular shape. FumaraseC_C is the C-terminal 65 residues referred to as domain 3. The core of the molecule consists of a bundle of 20 alpha-helices from the five-helix bundle of domain 2. The projections from the core of the tetramer are generated from domains 1 and 3 of each subunit []. This entry does not appear to be part of either the active site or the activation site but is helical in structure forming a little bundle. ; GO: 0016829 lyase activity, 0006099 tricarboxylic acid cycle; PDB: 3RRP_A 3OCE_D 3OCF_D 3E04_B 3GTD_A 3R6V_F 3R6Q_F 1J3U_B 1FUR_A 1YFE_A ....
Probab=28.65 E-value=65 Score=23.09 Aligned_cols=19 Identities=21% Similarity=0.265 Sum_probs=15.0
Q ss_pred HHHHHHHcCCCCHHHHHHH
Q 016903 300 FRKWIESNGWWNGDIESEL 318 (380)
Q Consensus 300 ~~~~L~~~g~~t~~e~~~i 318 (380)
+++-+++.|++|+++++++
T Consensus 28 vre~v~~~g~lt~ee~d~l 46 (55)
T PF10415_consen 28 VREVVLEEGLLTEEELDEL 46 (55)
T ss_dssp HHHHHHHTTSS-HHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHH
Confidence 5667778999999999876
No 307
>cd01467 vWA_BatA_type VWA BatA type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses. In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if
Probab=27.94 E-value=3.9e+02 Score=22.89 Aligned_cols=71 Identities=15% Similarity=0.141 Sum_probs=37.5
Q ss_pred CCeeEEEeCccccCcch--HHHHHHHHHHcCCCEEEEEEcCCccccccccc-ccCCcCHHHHHhhcCceEEEEe
Q 016903 165 DACAVTYFGDGGTSEGD--FHAALNFSAVTEAPVIFICRNNGWAISTPISD-QFRSDGAVVKGRAYGVRSIRVD 235 (380)
Q Consensus 165 ~~~vv~~~GDG~~~eG~--~~Eal~~A~~~~Lpvi~vv~NN~~~~~~~~~~-~~~~~~~~~~a~a~G~~~~~Vd 235 (380)
.+.+|+++.||..+.|. ..++...+...+++|..|-.-+......+... .....-+..+|..-|.....+.
T Consensus 102 ~~~~iiliTDG~~~~g~~~~~~~~~~~~~~gi~i~~i~ig~~~~~~~~~~~~~~~~~~l~~la~~tgG~~~~~~ 175 (180)
T cd01467 102 KERVIVLLTDGENNAGEIDPATAAELAKNKGVRIYTIGVGKSGSGPKPDGSTILDEDSLVEIADKTGGRIFRAL 175 (180)
T ss_pred CCCEEEEEeCCCCCCCCCCHHHHHHHHHHCCCEEEEEEecCCCCCcCCCCcccCCHHHHHHHHHhcCCEEEEec
Confidence 35789999999877663 33555666667777665554432211111100 0111124455666666665554
No 308
>PF04695 Pex14_N: Peroxisomal membrane anchor protein (Pex14p) conserved region; InterPro: IPR006785 This conserved region defines a group of peroxisomal membrane anchor proteins which bind the PTS1 (peroxisomal targeting signal) receptor and are required for the import of PTS1-containing proteins into peroxisomes. Loss of functional Pex14p results in defects in both the PTS1 and PTS2-dependent import pathways. Deletion analysis of this conserved region implicates it in selective peroxisome degradation. In the majority of members this region is situated at the N terminus of the protein [, ].; GO: 0005777 peroxisome, 0016020 membrane; PDB: 2W85_A 2W84_A 3FF5_B.
Probab=27.49 E-value=96 Score=26.46 Aligned_cols=32 Identities=16% Similarity=0.213 Sum_probs=22.1
Q ss_pred CChHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Q 016903 294 QDPVTRFRKWIESNGWWNGDIESELRSSVRKQI 326 (380)
Q Consensus 294 ~DPi~~~~~~L~~~g~~t~~e~~~i~~~~~~~v 326 (380)
.-|+.+=.++|..+| +|++|+++.-.++....
T Consensus 20 ~sp~~~k~~FL~sKG-Lt~~EI~~al~~a~~~~ 51 (136)
T PF04695_consen 20 NSPLEKKIAFLESKG-LTEEEIDEALGRAGSPP 51 (136)
T ss_dssp CS-HHHHHHHHHHCT---HHHHHHHHHHHT--S
T ss_pred cCCHHHHHHHHHcCC-CCHHHHHHHHHhcCCcc
Confidence 567788889999999 69999988777766654
No 309
>PRK08610 fructose-bisphosphate aldolase; Reviewed
Probab=27.37 E-value=5.8e+02 Score=24.73 Aligned_cols=113 Identities=16% Similarity=0.113 Sum_probs=71.1
Q ss_pred CCeeEEEeCccccCc-ch---HHHHHH-HHHHcC--CCEEEEEEcCCcccccccccccCCcCHHHHHhhcCceEEEEeCC
Q 016903 165 DACAVTYFGDGGTSE-GD---FHAALN-FSAVTE--APVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGN 237 (380)
Q Consensus 165 ~~~vv~~~GDG~~~e-G~---~~Eal~-~A~~~~--Lpvi~vv~NN~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~VdG~ 237 (380)
+.+++.-+..|.+.. |. +...+. +|...+ .||.+-.+-- . ..+...+|-..|+.++-+||.
T Consensus 42 ~sPvIl~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~vPV~lHLDHg-----------~-~~e~i~~ai~~GftSVM~DgS 109 (286)
T PRK08610 42 NAPVILGVSEGAARYMSGFYTVVKMVEGLMHDLNITIPVAIHLDHG-----------S-SFEKCKEAIDAGFTSVMIDAS 109 (286)
T ss_pred CCCEEEEcCccHHhhcCcHHHHHHHHHHHHHHcCCCCCEEEECCCC-----------C-CHHHHHHHHHcCCCEEEEeCC
Confidence 567888888887643 31 222222 344555 5766544321 1 123345666679999999984
Q ss_pred --CHHHHHHHHHHHHHHhhccCCcEEEEEEeecCCCCCCC--CCCCCCCChhhHHHHH
Q 016903 238 --DALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTS--DDSTKYRPVDEIEWWR 291 (380)
Q Consensus 238 --D~~av~~a~~~a~~~ar~~~gP~lIe~~t~R~~gHs~~--Dd~~~Yr~~~e~~~~~ 291 (380)
+.++=.+..++.+++|+..+ +-||+..-+.+|-... ++...|.+++|.+.+-
T Consensus 110 ~l~~eeNi~~T~~vve~Ah~~g--v~VEaElG~vgg~ed~~~~~~~~yT~peea~~Fv 165 (286)
T PRK08610 110 HSPFEENVATTKKVVEYAHEKG--VSVEAELGTVGGQEDDVVADGIIYADPKECQELV 165 (286)
T ss_pred CCCHHHHHHHHHHHHHHHHHcC--CEEEEEEeccCCccCCCCCcccccCCHHHHHHHH
Confidence 55666677788888877654 6788888777664321 1234599999988774
No 310
>cd05710 SIS_1 A subgroup of the SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=27.32 E-value=1.3e+02 Score=24.70 Aligned_cols=40 Identities=20% Similarity=0.219 Sum_probs=28.1
Q ss_pred CCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCC
Q 016903 163 RKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG 204 (380)
Q Consensus 163 ~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~ 204 (380)
+++..++++..-|... ...+++..|...+.|+|.|..+..
T Consensus 46 ~~~dl~I~iS~SG~t~--~~~~~~~~a~~~g~~vi~iT~~~~ 85 (120)
T cd05710 46 TEKSVVILASHSGNTK--ETVAAAKFAKEKGATVIGLTDDED 85 (120)
T ss_pred CCCcEEEEEeCCCCCh--HHHHHHHHHHHcCCeEEEEECCCC
Confidence 3456777777777765 367778888888888777776543
No 311
>TIGR03142 cytochro_ccmI cytochrome c-type biogenesis protein CcmI. This TPR repeat-containing protein is the CcmI protein (also called CycH) of c-type cytochrome biogenesis. CcmI is thought to act as an apo-cytochrome c chaperone. This model describes the N-terminal region of the protein, Members of this protein family
Probab=27.23 E-value=1e+02 Score=25.42 Aligned_cols=38 Identities=13% Similarity=0.287 Sum_probs=28.2
Q ss_pred ChHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 016903 295 DPVTRFRKWIESNGWWNGDIESELRSSVRKQILHALQEA 333 (380)
Q Consensus 295 DPi~~~~~~L~~~g~~t~~e~~~i~~~~~~~v~~a~~~a 333 (380)
|=+.-+.+. .++|.++++|.++.+.|++..+-+..+..
T Consensus 43 ~qL~ELe~d-~~~G~l~~~e~~~~~~El~rrLL~d~~~~ 80 (117)
T TIGR03142 43 DRLAELERD-LAEGLLDEAEAEAARAELQRRLLADIPAA 80 (117)
T ss_pred HHHHHHHHH-HHcCCCCHHHHHHHHHHHHHHHHHCcccc
Confidence 334444444 35799999999999999999988775543
No 312
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=27.08 E-value=2.2e+02 Score=24.85 Aligned_cols=20 Identities=15% Similarity=0.207 Sum_probs=13.3
Q ss_pred CHHHHHhhcCceEEEEeCCC
Q 016903 219 GAVVKGRAYGVRSIRVDGND 238 (380)
Q Consensus 219 ~~~~~a~a~G~~~~~VdG~D 238 (380)
+..+.++..|++++-+.++.
T Consensus 90 ~~~~~ak~~g~~ii~IT~~~ 109 (179)
T TIGR03127 90 TVAKKAKEIGATVAAITTNP 109 (179)
T ss_pred HHHHHHHHCCCeEEEEECCC
Confidence 45667777777777776543
No 313
>cd08330 CARD_ASC_NALP1 Caspase activation and recruitment domain found in Human ASC, NALP1, and similar proteins. Caspase activation and recruitment domain (CARD) similar to those found in human ASC (Apoptosis-associated speck-like protein containing a CARD) and NALP1 (CARD7, NLRP1). ASC, an adaptor molecule, and NALP1, a member of the Nod-like receptor (NLR) family, are involved in the assembly of the 'inflammasome', a multiprotein platform, which is responsible for caspase-1 activation and regulation of IL-1beta maturation. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and DED (Death Effector Domain). They se
Probab=26.90 E-value=74 Score=24.66 Aligned_cols=27 Identities=15% Similarity=0.074 Sum_probs=22.9
Q ss_pred hHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 016903 296 PVTRFRKWIESNGWWNGDIESELRSSV 322 (380)
Q Consensus 296 Pi~~~~~~L~~~g~~t~~e~~~i~~~~ 322 (380)
.+..+-..|.+.|++|+++.+.|+++-
T Consensus 16 ~v~~ilD~L~~~~Vit~e~~~~I~a~~ 42 (82)
T cd08330 16 NVDPILDKLHGKKVITQEQYSEVRAEK 42 (82)
T ss_pred hHHHHHHHHHHCCCCCHHHHHHHHcCC
Confidence 456677899999999999999998765
No 314
>PLN03013 cysteine synthase
Probab=26.89 E-value=3.1e+02 Score=28.29 Aligned_cols=54 Identities=20% Similarity=0.175 Sum_probs=32.8
Q ss_pred HHHHcCCCEEEEEEcCCcccccccccccCCcCHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhc
Q 016903 188 FSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIG 255 (380)
Q Consensus 188 ~A~~~~Lpvi~vv~NN~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~a~~~ar~ 255 (380)
.|..+++|+++|+-++- ...-.+..++||.+++.+++++ ....+++.|.+.+++
T Consensus 193 ~a~~~G~~~~VvvP~~~------------s~~K~~~ira~GAeVi~v~~~~--~~~~a~~~A~ela~~ 246 (429)
T PLN03013 193 IAASRGYRLILTMPASM------------SMERRVLLKAFGAELVLTDPAK--GMTGAVQKAEEILKN 246 (429)
T ss_pred HHHHcCCCEEEEECCCC------------cHHHHHHHHHcCCEEEEECCCC--ChHHHHHHHHHHHhh
Confidence 45668999999886642 1223467788999998887642 122334444444333
No 315
>PLN02618 tryptophan synthase, beta chain
Probab=26.86 E-value=3.7e+02 Score=27.52 Aligned_cols=70 Identities=23% Similarity=0.126 Sum_probs=38.7
Q ss_pred HHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCcCHHHHHhhcCceE
Q 016903 152 AVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRS 231 (380)
Q Consensus 152 A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~~~~~~~~~~~~~~~~~~a~a~G~~~ 231 (380)
+++.++..+..+. ..+|+-+|=|-. |. -....|+..++++++++-.+.. ..+ ..-..+.+.||.++
T Consensus 107 a~~~~l~A~~~g~-~~vIaesgaGNh--G~--AlA~aaa~~Gl~~~I~m~~~~~------~~~---~~nv~~mr~lGA~V 172 (410)
T PLN02618 107 AVAQALLAKRLGK-KRIIAETGAGQH--GV--ATATVCARFGLECIVYMGAQDM------ERQ---ALNVFRMRLLGAEV 172 (410)
T ss_pred HHHHHHHHHHcCC-CEEEEEcCcHHH--HH--HHHHHHHHcCCcEEEEEcCCch------hhh---hhhHHHHHHCCCEE
Confidence 4555555554443 446666555543 21 1133466789998877754321 011 11224678899999
Q ss_pred EEEe
Q 016903 232 IRVD 235 (380)
Q Consensus 232 ~~Vd 235 (380)
+.|.
T Consensus 173 i~v~ 176 (410)
T PLN02618 173 RPVH 176 (410)
T ss_pred EEEe
Confidence 9884
No 316
>cd08329 CARD_BIRC2_BIRC3 Caspase activation and recruitment domain found in Baculoviral IAP repeat-containing proteins, BIRC2 (c-IAP1) and BIRC3 (c-IAP2). Caspase activation and recruitment domain (CARD) similar to those found in Baculoviral IAP repeat (BIR)-containing protein 2 (BIRC2) or cellular Inhibitor of Apoptosis Protein 1 (c-IAP1), and BIRC3 (or c-IAP2). IAPs are anti-apoptotic proteins that contain at least one BIR domain. Most IAPs also contain a C-terminal RING domain. In addition, both BIRC2 and BIRC3 contain a CARD. BIRC2 and BIRC3, through their binding with TRAF (TNF receptor-associated factor) 2, are recruited to TNFR-1/2 signaling complexes, where they regulate caspase-8 activity. They also play important roles in pro-survival NF-kB signaling pathways. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation and host-defense mechanisms. DDs are protein-protein interac
Probab=26.20 E-value=81 Score=25.18 Aligned_cols=36 Identities=11% Similarity=0.036 Sum_probs=27.1
Q ss_pred ChHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH
Q 016903 295 DPVTRFRKWIESNGWWNGDIESELRSSVRKQILHALQ 331 (380)
Q Consensus 295 DPi~~~~~~L~~~g~~t~~e~~~i~~~~~~~v~~a~~ 331 (380)
.++..+-..|.+.|++|+++.+.|+++.... ++|.+
T Consensus 23 ~~v~~ilD~Ll~~~Vlt~ee~e~I~~~~t~~-~qAr~ 58 (94)
T cd08329 23 TSVLPILDSLLSANVITEQEYDVIKQKTQTP-LQARE 58 (94)
T ss_pred hhhHHHHHHHHHcCCCCHHHHHHHHcCCChH-HHHHH
Confidence 4455567899999999999999998766552 55544
No 317
>COG0498 ThrC Threonine synthase [Amino acid transport and metabolism]
Probab=26.15 E-value=2.8e+02 Score=28.41 Aligned_cols=69 Identities=19% Similarity=0.201 Sum_probs=40.8
Q ss_pred CCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCcCHHHHHhhcCceEEEEeCCCHHHHHH
Q 016903 165 DACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYS 244 (380)
Q Consensus 165 ~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~VdG~D~~av~~ 244 (380)
+.++.+..||-+. -.-.+|++.++.+++++=+++.+.. -...+..+|.+++.|+|+ .+++.+
T Consensus 127 ~~I~~ASSGnTgA------s~aaya~rag~~v~Vl~P~g~vs~~-----------k~~q~~~~ga~~i~v~G~-fDda~~ 188 (411)
T COG0498 127 KTILCASSGNTGA------SAAAYAARAGLKVFVLYPKGKVSPG-----------KLAQMLTLGAHVIAVDGN-FDDAQE 188 (411)
T ss_pred CEEEEeCCchHHH------HHHHHhccCCCeEEEEecCCCCCHH-----------HHHHHHhcCCEEEEEcCc-HHHHHH
Confidence 4455555565442 2355677888888877765543321 123345567788888874 555666
Q ss_pred HHHHHHH
Q 016903 245 AVHAARE 251 (380)
Q Consensus 245 a~~~a~~ 251 (380)
.++++.+
T Consensus 189 ~vk~~~~ 195 (411)
T COG0498 189 LVKEAAN 195 (411)
T ss_pred HHHHHHh
Confidence 6666654
No 318
>PRK13936 phosphoheptose isomerase; Provisional
Probab=26.05 E-value=2.5e+02 Score=25.33 Aligned_cols=38 Identities=11% Similarity=0.149 Sum_probs=20.8
Q ss_pred CCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEc
Q 016903 163 RKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRN 202 (380)
Q Consensus 163 ~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~N 202 (380)
+++.+++++...|... .+.+++..|...+.|+|.|..+
T Consensus 110 ~~~Dv~i~iS~sG~t~--~~~~~~~~ak~~g~~iI~IT~~ 147 (197)
T PRK13936 110 QPGDVLLAISTSGNSA--NVIQAIQAAHEREMHVVALTGR 147 (197)
T ss_pred CCCCEEEEEeCCCCcH--HHHHHHHHHHHCCCeEEEEECC
Confidence 3455555555555543 2455555566666666655544
No 319
>cd00032 CASc Caspase, interleukin-1 beta converting enzyme (ICE) homologues; Cysteine-dependent aspartate-directed proteases that mediate programmed cell death (apoptosis). Caspases are synthesized as inactive zymogens and activated by proteolysis of the peptide backbone adjacent to an aspartate. The resulting two subunits associate to form an (alpha)2(beta)2-tetramer which is the active enzyme. Activation of caspases can be mediated by other caspase homologs.
Probab=25.89 E-value=1.8e+02 Score=27.09 Aligned_cols=69 Identities=9% Similarity=0.007 Sum_probs=44.7
Q ss_pred CEEEEEEcCCcccccccccc--cCCcCHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEE
Q 016903 195 PVIFICRNNGWAISTPISDQ--FRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEA 264 (380)
Q Consensus 195 pvi~vv~NN~~~~~~~~~~~--~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~ 264 (380)
.+.+||.|..|.-..+.... .....+.+.++.+|+.+....--+..++.+++++..+ ....+.-+++-+
T Consensus 10 g~aLII~n~~f~~~~~~r~g~~~D~~~l~~~f~~lgF~V~~~~nlt~~~~~~~l~~f~~-~~~~~~d~~v~~ 80 (243)
T cd00032 10 GLALIINNENFDKGLKDRDGTDVDAENLTKLFESLGYEVEVKNNLTAEEILEELKEFAS-PDHSDSDSFVCV 80 (243)
T ss_pred CEEEEEechhcCCCCCCCCChHHHHHHHHHHHHHCCCEEEEeCCCCHHHHHHHHHHHHh-ccCCCCCeeEEE
Confidence 47788888777541111111 1123577889999999999887788899999988764 223344555544
No 320
>PRK06988 putative formyltransferase; Provisional
Probab=25.83 E-value=3.6e+02 Score=26.32 Aligned_cols=59 Identities=8% Similarity=0.059 Sum_probs=36.1
Q ss_pred eEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCcCHHHHHhhcCceEEEEe
Q 016903 168 AVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVD 235 (380)
Q Consensus 168 vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~Vd 235 (380)
-|+|+|.+.+. ..+|..-...+..++.|+.+..-. .. ......+.++|+..|++++..+
T Consensus 4 kIvf~Gs~~~a----~~~L~~L~~~~~~i~~Vvt~~d~~----~~-~~~~~~v~~~A~~~gip~~~~~ 62 (312)
T PRK06988 4 RAVVFAYHNVG----VRCLQVLLARGVDVALVVTHEDNP----TE-NIWFGSVAAVAAEHGIPVITPA 62 (312)
T ss_pred EEEEEeCcHHH----HHHHHHHHhCCCCEEEEEcCCCCC----cc-CcCCCHHHHHHHHcCCcEEccc
Confidence 37888988874 234444444566777777653211 01 1122457789999999998744
No 321
>PF05014 Nuc_deoxyrib_tr: Nucleoside 2-deoxyribosyltransferase; InterPro: IPR007710 Nucleoside 2-deoxyribosyltransferase (2.4.2.6 from EC) catalyses the cleavage of the glycosidic bonds of 2-deoxyribonucleosides. Nucleoside 2-deoxyribosyltransferases can be divided into two groups based on their substrate specificity: class I enzymes are specific for the transfer of deoxyribose between two purines, while class II enzymes will transfer the deoxyribose between either purines or pyrimidines. The structure of the class I [] and class II [] enzymes are very similar. In class I enzymes, the purine base shields the active site from solvent, which the smaller pyrimidine base cannot do, while in class II enzymes the active site is shielded by a loop (residues 48-62). Both classes of enzymes are found in various Lactobacillus species and participate in nucleoside recycling in these microorganisms. This entry represents both classes of enzymes.; GO: 0050144 nucleoside deoxyribosyltransferase activity, 0070694 deoxyribonucleoside 5'-monophosphate N-glycosidase activity, 0009159 deoxyribonucleoside monophosphate catabolic process; PDB: 1S2L_A 1S2D_C 1S2I_A 1S3F_B 1S2G_C 2A0K_A 2F67_A 2F64_B 2F62_A 2F2T_A ....
Probab=25.82 E-value=1.2e+02 Score=24.57 Aligned_cols=39 Identities=13% Similarity=0.225 Sum_probs=27.1
Q ss_pred CeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCc
Q 016903 166 ACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGW 205 (380)
Q Consensus 166 ~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~ 205 (380)
..+|+.+.+-....|..+| +-.|...+.||+.+..+...
T Consensus 63 D~via~l~~~~~d~Gt~~E-lG~A~algkpv~~~~~d~~~ 101 (113)
T PF05014_consen 63 DIVIANLDGFRPDSGTAFE-LGYAYALGKPVILLTEDDRP 101 (113)
T ss_dssp SEEEEEECSSS--HHHHHH-HHHHHHTTSEEEEEECCCCT
T ss_pred CEEEEECCCCCCCCcHHHH-HHHHHHCCCEEEEEEcCCcc
Confidence 3455555543466677788 88888899999999987665
No 322
>COG2515 Acd 1-aminocyclopropane-1-carboxylate deaminase [Amino acid transport and metabolism]
Probab=25.72 E-value=4.3e+02 Score=26.05 Aligned_cols=106 Identities=20% Similarity=0.245 Sum_probs=62.7
Q ss_pred eEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCcCHHHHHhhcCceEEEEe-CCCHHHHHHHH
Q 016903 168 AVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVD-GNDALAIYSAV 246 (380)
Q Consensus 168 vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~Vd-G~D~~av~~a~ 246 (380)
+++.+ |+.+...+......|++.++-.|++++|-- . .-..+.++ -+.+-+|....-|| |.|+. +..-+
T Consensus 66 TlvT~--GgiQSNh~r~tAavA~~lGl~~v~ile~~~-~------~y~~ngn~-Ll~~l~G~~~~~~~~~~d~~-~~~~~ 134 (323)
T COG2515 66 TLVTY--GGIQSNHVRQTAAVAAKLGLKCVLILENIE-A------NYLLNGNL-LLSKLMGAEVRAVDAGTDIG-INASA 134 (323)
T ss_pred EEEEe--cccchhHHHHHHHHHHhcCCcEEEEEeccc-c------ccccccch-hhhhhcCceEEEecCCCChh-hchhh
Confidence 44444 567666788888888999999999998754 0 00111122 24556799988887 46662 23333
Q ss_pred HHHHHHh-hccCCcEEEEEEeecCCC-CCCCCCCCCC-CChhhHHHHH
Q 016903 247 HAAREMA-IGEGRPILIEALTYRVGH-HTTSDDSTKY-RPVDEIEWWR 291 (380)
Q Consensus 247 ~~a~~~a-r~~~gP~lIe~~t~R~~g-Hs~~Dd~~~Y-r~~~e~~~~~ 291 (380)
++..+.+ +++++|.+|- -+| |+.+ .-.| |-..|+..|.
T Consensus 135 ~~~~e~~~~~g~kpyvIp-----~GG~~~~g--~lGyv~~a~Ei~~Q~ 175 (323)
T COG2515 135 EELAEEVRKQGGKPYVIP-----EGGSSPLG--ALGYVRLALEIAEQA 175 (323)
T ss_pred HHHHHHHHhcCCCCcEec-----cCCcCccc--cccHHHHHHHHHHHH
Confidence 3333322 2477899884 344 3322 1345 4566777774
No 323
>PRK10886 DnaA initiator-associating protein DiaA; Provisional
Probab=25.70 E-value=2.5e+02 Score=25.48 Aligned_cols=18 Identities=17% Similarity=0.187 Sum_probs=8.7
Q ss_pred HHHHHhhcCceEEEEeCC
Q 016903 220 AVVKGRAYGVRSIRVDGN 237 (380)
Q Consensus 220 ~~~~a~a~G~~~~~VdG~ 237 (380)
..+.|+..|++++.+.|.
T Consensus 128 a~~~Ak~~G~~vI~IT~~ 145 (196)
T PRK10886 128 AVEAAVTRDMTIVALTGY 145 (196)
T ss_pred HHHHHHHCCCEEEEEeCC
Confidence 344455555555554443
No 324
>PF00205 TPP_enzyme_M: Thiamine pyrophosphate enzyme, central domain; InterPro: IPR012000 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This central domain of TPP enzymes contains a 2-fold Rossman fold. ; GO: 0000287 magnesium ion binding, 0030976 thiamine pyrophosphate binding; PDB: 1OZH_C 1OZF_B 1OZG_B 2Q29_B 2Q28_A 2Q27_B 1OVM_B 1PVD_A 1PYD_B 2VK1_C ....
Probab=25.54 E-value=40 Score=28.18 Aligned_cols=34 Identities=18% Similarity=0.193 Sum_probs=27.7
Q ss_pred CCeeEEEeCccccCcchHHHHHHHHHHcCCCEEE
Q 016903 165 DACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIF 198 (380)
Q Consensus 165 ~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~ 198 (380)
.++.+.++|.|.-..|..-|...+|.++++|++-
T Consensus 11 A~rP~il~G~g~~~~~a~~~l~~lae~~~~Pv~~ 44 (137)
T PF00205_consen 11 AKRPVILAGRGARRSGAAEELRELAEKLGIPVAT 44 (137)
T ss_dssp -SSEEEEE-HHHHHTTCHHHHHHHHHHHTSEEEE
T ss_pred CCCEEEEEcCCcChhhHHHHHHHHHHHHCCCEEe
Confidence 4568999999999778888999999999999853
No 325
>PRK08452 flagellar protein FlaG; Provisional
Probab=25.45 E-value=80 Score=26.74 Aligned_cols=41 Identities=17% Similarity=0.241 Sum_probs=28.8
Q ss_pred ccccCCCCCCCCeeEEeCCC-CCCCCCCCCCCCCHHHHHHHHHHHHHH
Q 016903 2 RFISESSEERIPCYRVLDDD-GQPFPDSSFVKVSEGVAIKMYNDMVTL 48 (380)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~e~l~~~y~~M~~~ 48 (380)
+| +..+.-....++|+|.+ |.++ ..+++++++++++.|...
T Consensus 74 ~F-~~de~~~~~vVkVvD~~T~eVI-----RqIP~Ee~L~l~~~m~e~ 115 (124)
T PRK08452 74 RF-GYNDKIKGLVVSVKEANGGKVI-----REIPSKEAIELMEYMRDV 115 (124)
T ss_pred EE-EEcCCCCcEEEEEEECCCCcee-----eeCCCHHHHHHHHHHHHh
Confidence 45 33444556789999987 3443 358999999999988543
No 326
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=25.41 E-value=2e+02 Score=27.75 Aligned_cols=55 Identities=13% Similarity=0.238 Sum_probs=39.7
Q ss_pred cchHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCcCHHHHHhhcCceEEEEe
Q 016903 179 EGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVD 235 (380)
Q Consensus 179 eG~~~Eal~~A~~~~Lpvi~vv~NN~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~Vd 235 (380)
.-.+-|-+..|...++.|++.+..+...-..+...+. ....++.+..|+++++||
T Consensus 72 ~~dl~elv~Ya~~KgVgi~lw~~~~~~~~~~~~~~~~--~~~f~~~~~~Gv~GvKid 126 (273)
T PF10566_consen 72 DFDLPELVDYAKEKGVGIWLWYHSETGGNVANLEKQL--DEAFKLYAKWGVKGVKID 126 (273)
T ss_dssp T--HHHHHHHHHHTT-EEEEEEECCHTTBHHHHHCCH--HHHHHHHHHCTEEEEEEE
T ss_pred ccCHHHHHHHHHHcCCCEEEEEeCCcchhhHhHHHHH--HHHHHHHHHcCCCEEeeC
Confidence 3457788889999999999888877644444444442 567788999999999987
No 327
>cd08332 CARD_CASP2 Caspase activation and recruitment domain of Caspase-2. Caspase activation and recruitment domain (CARD) similar to that found in caspase-2. Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Caspase-2 (also known as ICH1, NEDD2, or CASP2) is one of the most evolutionarily conserved caspases, and plays a role in apoptosis, DNA damage response, cell cycle regulation, and tumor suppression. It is localized in the nucleus and exhibits properties of both an initiator and an effector caspase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and
Probab=25.08 E-value=93 Score=24.56 Aligned_cols=26 Identities=0% Similarity=0.031 Sum_probs=21.9
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHH
Q 016903 297 VTRFRKWIESNGWWNGDIESELRSSV 322 (380)
Q Consensus 297 i~~~~~~L~~~g~~t~~e~~~i~~~~ 322 (380)
+..+..+|+.+|++|+++.+.|++.-
T Consensus 22 ~~~v~~~L~~~gvlt~~~~~~I~~~~ 47 (90)
T cd08332 22 LDELLIHLLQKDILTDSMAESIMAKP 47 (90)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHcCC
Confidence 44578999999999999999998753
No 328
>PF00926 DHBP_synthase: 3,4-dihydroxy-2-butanone 4-phosphate synthase; InterPro: IPR000422 3,4-dihydroxy-2-butanone 4-phosphate synthase (4.1.99.12 from EC) (DHBP synthase) (RibB) catalyses the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate, the latter serving as the biosynthetic precursor for the xylene ring of riboflavin []. In Photobacterium leiognathi, the riboflavin synthesis genes ribB (DHBP synthase), ribE (riboflavin synthase), ribH (lumazone synthase) and ribA (GTP cyclohydrolase II) all reside in the lux operon []. RibB is sometimes found as a bifunctional enzyme with GTP cyclohydrolase II that catalyses the first committed step in the biosynthesis of riboflavin (IPR000926 from INTERPRO). No sequences with significant homology to DHBP synthase are found in the metazoa.; GO: 0008686 3,4-dihydroxy-2-butanone-4-phosphate synthase activity, 0009231 riboflavin biosynthetic process; PDB: 1K4O_A 1K4L_A 1K4P_A 1K49_A 1K4I_A 1TKU_A 1TKS_B 2RIS_A 2RIU_A 3MIO_A ....
Probab=24.52 E-value=1.1e+02 Score=28.00 Aligned_cols=66 Identities=21% Similarity=0.355 Sum_probs=46.4
Q ss_pred CCCCeeEEEeCcccc--CcchHHHHHHHHHHcCC-CEEEEEE--cCCcccccccccccCCcCHHHHHhhcCceEEEEe
Q 016903 163 RKDACAVTYFGDGGT--SEGDFHAALNFSAVTEA-PVIFICR--NNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVD 235 (380)
Q Consensus 163 ~~~~~vv~~~GDG~~--~eG~~~Eal~~A~~~~L-pvi~vv~--NN~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~Vd 235 (380)
.|+++......+|.+ ..|..--++.+|..-++ |+-++|+ |.. ....+..++.+.|+.+|++.+.++
T Consensus 118 ~PGHv~Pl~a~~gGvl~R~GhtEaavdLa~lAGl~p~avi~eil~~d-------G~~~~~~~~~~fA~~~~l~~vsi~ 188 (194)
T PF00926_consen 118 RPGHVFPLRARPGGVLERRGHTEAAVDLARLAGLSPVAVICEILDDD-------GDMARRDELEEFAKKHGLPIVSIE 188 (194)
T ss_dssp EEEEEEEEEE-TTGGGTSSSHHHHHHHHHHHTTS-SBEEEEEBBETT-------SSBHCHHHHHHHHHHTT-EEEEHH
T ss_pred CCCCCccceecCCcccCCCChHHHHHHHHHHhCCCCcEEEEEEeCCC-------CCcCCHHHHHHHHHHcCCcEEEHH
Confidence 355667777778776 56888889999999999 8777775 221 122334567789999999999876
No 329
>TIGR03436 acidobact_VWFA VWFA-related Acidobacterial domain. Members of this family are bacterial domains that include a region related to the von Willebrand factor type A (VWFA) domain (pfam00092). These domains are restricted to, and have undergone a large paralogous family expansion in, the Acidobacteria, including Solibacter usitatus and Acidobacterium capsulatum ATCC 51196.
Probab=24.52 E-value=4.6e+02 Score=24.82 Aligned_cols=85 Identities=16% Similarity=0.147 Sum_probs=45.1
Q ss_pred CCeeEEEeCccccCcc--hHHHHHHHHHHcCCCEEEEEEcCCcc--cccccccc-cCCcCHHHHHhhcCceEEEEeCCCH
Q 016903 165 DACAVTYFGDGGTSEG--DFHAALNFSAVTEAPVIFICRNNGWA--ISTPISDQ-FRSDGAVVKGRAYGVRSIRVDGNDA 239 (380)
Q Consensus 165 ~~~vv~~~GDG~~~eG--~~~Eal~~A~~~~Lpvi~vv~NN~~~--~~~~~~~~-~~~~~~~~~a~a~G~~~~~VdG~D~ 239 (380)
.+++++++.||.-+.+ ...+.+..+...+++|-.|-.-.... ........ .....+.++|+.-|...+.++.+++
T Consensus 164 ~rk~iIllTDG~~~~~~~~~~~~~~~~~~~~v~vy~I~~~~~~~~~~~~~~~~~~~~~~~L~~iA~~TGG~~~~~~~~~l 243 (296)
T TIGR03436 164 GRKALIVISDGGDNRSRDTLERAIDAAQRADVAIYSIDARGLRAPDLGAGAKAGLGGPEALERLAEETGGRAFYVNSNDL 243 (296)
T ss_pred CCeEEEEEecCCCcchHHHHHHHHHHHHHcCCEEEEeccCccccCCcccccccCCCcHHHHHHHHHHhCCeEecccCccH
Confidence 5788999999976533 24555656666666544443211000 00000000 1123466788888888777655554
Q ss_pred HHHHHHHHHHHHH
Q 016903 240 LAIYSAVHAAREM 252 (380)
Q Consensus 240 ~av~~a~~~a~~~ 252 (380)
..+++++.+.
T Consensus 244 ---~~~f~~i~~~ 253 (296)
T TIGR03436 244 ---DGAFAQIAEE 253 (296)
T ss_pred ---HHHHHHHHHH
Confidence 4455555544
No 330
>cd05017 SIS_PGI_PMI_1 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions. These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the first SIS domain.
Probab=24.52 E-value=1.4e+02 Score=24.38 Aligned_cols=36 Identities=17% Similarity=0.171 Sum_probs=22.9
Q ss_pred CCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEE
Q 016903 164 KDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICR 201 (380)
Q Consensus 164 ~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~ 201 (380)
++..++++.-.|...+ ..+++..|...+.|+|.|..
T Consensus 43 ~~dl~I~iS~SG~t~e--~i~~~~~a~~~g~~iI~IT~ 78 (119)
T cd05017 43 RKTLVIAVSYSGNTEE--TLSAVEQAKERGAKIVAITS 78 (119)
T ss_pred CCCEEEEEECCCCCHH--HHHHHHHHHHCCCEEEEEeC
Confidence 4556666666666643 56667777777777666663
No 331
>cd08785 CARD_CARD9-like Caspase activation and recruitment domain of CARD9 and related proteins. Caspase activation and recruitment domain (CARD) found in CARD9, CARD14 (CARMA2), CARD10 (CARMA3), CARD11 (CARMA1) and BCL10. BCL10 (B-cell lymphoma 10), together with Malt1 (mucosa-associated lymphoid tissue-lymphoma-translocation gene 1), are integral components of the CBM signalosome. They associate with CARD9 to form M-CBM (CBM complex in myeloid immune cells), and with CARD11 to form L-CBM (CBM complex in lymphoid immune cells), which mediates activation of NF-kB and MAPK by ITAM-coupled receptors expressed on immune cells. BCL10/Malt1 also associates with CARD10, which is more widely expressed and is not restricted to hematopoietic cells, to play a role in GPCR-induced NF-kB activation. CARD14 has also been shown to associate with BCL10. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inf
Probab=24.38 E-value=78 Score=24.94 Aligned_cols=27 Identities=22% Similarity=0.245 Sum_probs=22.8
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 016903 297 VTRFRKWIESNGWWNGDIESELRSSVR 323 (380)
Q Consensus 297 i~~~~~~L~~~g~~t~~e~~~i~~~~~ 323 (380)
..++-.+|.+.|++|+++.++|.+...
T Consensus 18 ~~~l~d~L~q~~VLt~~d~EeI~~~~t 44 (86)
T cd08785 18 PSRLTPYLRQCKVLDEQDEEEVLSSPR 44 (86)
T ss_pred HHHHHHHHHhcCCCCHHHHHHHhCCCc
Confidence 345889999999999999999988654
No 332
>TIGR00315 cdhB CO dehydrogenase/acetyl-CoA synthase complex, epsilon subunit. Nomenclature follows the description for Methanosarcina thermophila. The complex is also found in Archaeoglobus fulgidus, not considered a methanogen, but is otherwise generally associated with methanogenesis.
Probab=24.33 E-value=1.2e+02 Score=26.78 Aligned_cols=39 Identities=10% Similarity=0.185 Sum_probs=31.1
Q ss_pred CCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEc
Q 016903 164 KDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRN 202 (380)
Q Consensus 164 ~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~N 202 (380)
..++.+.++|-|+...+..-+...+|...++||+.-...
T Consensus 26 ~AKRPvIivG~ga~~~~a~e~l~~laEklgiPVvtT~~~ 64 (162)
T TIGR00315 26 RAKRPLLIVGPENLEDEEKELIVKFIEKFDLPVVATADT 64 (162)
T ss_pred cCCCcEEEECCCcCcccHHHHHHHHHHHHCCCEEEcCcc
Confidence 345788889999987777888888999999998865543
No 333
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=24.02 E-value=2.8e+02 Score=30.01 Aligned_cols=80 Identities=20% Similarity=0.150 Sum_probs=40.7
Q ss_pred ccchHHHHHHHHHhhhc-------CCCCeeEEEeCccccCcc-----hHHHHHHHHHH---cCCCEEEEEEcCCcccccc
Q 016903 146 ATQLPHAVGAAYALKMD-------RKDACAVTYFGDGGTSEG-----DFHAALNFSAV---TEAPVIFICRNNGWAISTP 210 (380)
Q Consensus 146 G~~lp~A~G~A~A~k~~-------~~~~~vv~~~GDG~~~eG-----~~~Eal~~A~~---~~Lpvi~vv~NN~~~~~~~ 210 (380)
|.+-+++-|+..|.++. ...+.+|+++.||..+.+ ...+++..|.. .++++++|-..+.
T Consensus 538 gG~Tpl~~aL~~A~~~l~~~~~~~~~~~~~vvliTDG~~n~~~~~~~~~~~~~~~a~~l~~~~i~~~vIdt~~~------ 611 (633)
T TIGR02442 538 GGRTPLAAGLLKAAEVLSNELLRDDDGRPLLVVITDGRANVADGGEPPTDDARTIAAKLAARGILFVVIDTESG------ 611 (633)
T ss_pred CCCCCHHHHHHHHHHHHHHhhccCCCCceEEEEECCCCCCCCCCCCChHHHHHHHHHHHHhcCCeEEEEeCCCC------
Confidence 44444555554444322 134678999999988653 23344444444 3445444321111
Q ss_pred cccccCCcCHHHHHhhcCceEEEE
Q 016903 211 ISDQFRSDGAVVKGRAYGVRSIRV 234 (380)
Q Consensus 211 ~~~~~~~~~~~~~a~a~G~~~~~V 234 (380)
.....-..++|+..|..++.+
T Consensus 612 ---~~~~~~~~~lA~~~gg~y~~l 632 (633)
T TIGR02442 612 ---FVRLGLAEDLARALGGEYVRL 632 (633)
T ss_pred ---CcchhHHHHHHHhhCCeEEec
Confidence 011122446777777777654
No 334
>TIGR01415 trpB_rel pyridoxal-phosphate dependent TrpB-like enzyme. This model represents a family of pyridoxal-phosphate dependent enzyme (pfam00291) closely related to the beta subunit of tryptophan synthase (TIGR00263). However, the only case in which a member of this family replaces a member of TIGR00263 is in Sulfolobus species which contain two sequences which hit this model, one of which is proximal to the alpha subunit. In every other case so far, either the species appears not to make tryptophan (there is no trp synthase alpha subunit), or a trp synthase beta subunit matching TIGR00263 is also found.
Probab=24.01 E-value=7e+02 Score=25.47 Aligned_cols=45 Identities=13% Similarity=0.024 Sum_probs=27.9
Q ss_pred HHHH-HHHcCCCEEEEEEcCCcccccccccccCCcCHHHHHhhcCceEEEEeCCC
Q 016903 185 ALNF-SAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGND 238 (380)
Q Consensus 185 al~~-A~~~~Lpvi~vv~NN~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~VdG~D 238 (380)
++.+ |+.+++++++++-...+..+ +.-....+.||..++.+++..
T Consensus 132 alA~aaa~~Gl~~~V~mp~~s~~~k---------~~k~~~m~~~GA~Vi~~~~~~ 177 (419)
T TIGR01415 132 ALSLAGALFGLECKVFMVRVSFNQK---------PYRKYLMELYGAEVIPSPSEF 177 (419)
T ss_pred HHHHHHHHcCCcEEEEEeCCCcccC---------HHHHHHHHHcCCEEEEECCch
Confidence 4444 55689987776654322111 111256789999999998753
No 335
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=24.00 E-value=1.8e+02 Score=25.58 Aligned_cols=86 Identities=13% Similarity=0.105 Sum_probs=52.7
Q ss_pred CCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCccccccccc--------ccCCcCHHHHHhhcCceEEEEe
Q 016903 164 KDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISD--------QFRSDGAVVKGRAYGVRSIRVD 235 (380)
Q Consensus 164 ~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~~~~~~~~--------~~~~~~~~~~a~a~G~~~~~Vd 235 (380)
....-++++|-..+..+ .-.+....++++.+...+|...+..-... ........+.|+.+|++++.+.
T Consensus 75 ~~~~~Iavv~~~~~~~~----~~~~~~ll~~~i~~~~~~~~~e~~~~i~~~~~~G~~viVGg~~~~~~A~~~gl~~v~i~ 150 (176)
T PF06506_consen 75 KYGPKIAVVGYPNIIPG----LESIEELLGVDIKIYPYDSEEEIEAAIKQAKAEGVDVIVGGGVVCRLARKLGLPGVLIE 150 (176)
T ss_dssp CCTSEEEEEEESS-SCC----HHHHHHHHT-EEEEEEESSHHHHHHHHHHHHHTT--EEEESHHHHHHHHHTTSEEEESS
T ss_pred hcCCcEEEEecccccHH----HHHHHHHhCCceEEEEECCHHHHHHHHHHHHHcCCcEEECCHHHHHHHHHcCCcEEEEE
Confidence 33456677776666544 24455667888888887775332211110 1112235688999999999987
Q ss_pred CCCHHHHHHHHHHHHHHhh
Q 016903 236 GNDALAIYSAVHAAREMAI 254 (380)
Q Consensus 236 G~D~~av~~a~~~a~~~ar 254 (380)
. ..++++.|+.+|+.-++
T Consensus 151 s-g~esi~~Al~eA~~i~~ 168 (176)
T PF06506_consen 151 S-GEESIRRALEEALRIAR 168 (176)
T ss_dssp ---HHHHHHHHHHHHHHHH
T ss_pred e-cHHHHHHHHHHHHHHHH
Confidence 3 47889999999986544
No 336
>cd01822 Lysophospholipase_L1_like Lysophospholipase L1-like subgroup of SGNH-hydrolases. The best characterized member in this family is TesA, an E. coli periplasmic protein with thioesterase, esterase, arylesterase, protease and lysophospholipase activity.
Probab=23.90 E-value=2.1e+02 Score=24.30 Aligned_cols=26 Identities=12% Similarity=0.047 Sum_probs=17.1
Q ss_pred CHHHHHHHHHHHHHHhhccCCcEEEEE
Q 016903 238 DALAIYSAVHAAREMAIGEGRPILIEA 264 (380)
Q Consensus 238 D~~av~~a~~~a~~~ar~~~gP~lIe~ 264 (380)
++.++...+++.++.+|+.+ +.+|.+
T Consensus 82 ~~~~~~~~l~~li~~~~~~~-~~vil~ 107 (177)
T cd01822 82 PPDQTRANLRQMIETAQARG-APVLLV 107 (177)
T ss_pred CHHHHHHHHHHHHHHHHHCC-CeEEEE
Confidence 45677778888888887764 444433
No 337
>PF10925 DUF2680: Protein of unknown function (DUF2680); InterPro: IPR024485 Members in this family of proteins are annotated as YckD however currently no function is known.
Probab=23.61 E-value=2.7e+02 Score=20.24 Aligned_cols=30 Identities=3% Similarity=-0.003 Sum_probs=23.3
Q ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Q 016903 300 FRKWIESNGWWNGDIESELRSSVRKQILHA 329 (380)
Q Consensus 300 ~~~~L~~~g~~t~~e~~~i~~~~~~~v~~a 329 (380)
+-...++.|.+|.++-+.|.+.+....+..
T Consensus 23 ~idk~Ve~G~iTqeqAd~ik~~id~~~~~~ 52 (59)
T PF10925_consen 23 IIDKYVEAGVITQEQADAIKKHIDQRQEYM 52 (59)
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence 334456789999999999998888776654
No 338
>PRK13028 tryptophan synthase subunit beta; Provisional
Probab=23.60 E-value=4.3e+02 Score=26.89 Aligned_cols=71 Identities=18% Similarity=0.153 Sum_probs=40.0
Q ss_pred HHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCcCHHHHHhhcCce
Q 016903 151 HAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVR 230 (380)
Q Consensus 151 ~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~~~~~~~~~~~~~~~~~~a~a~G~~ 230 (380)
.++|.++..+..+.+ .+|+-.|.|-. |. .....|+..++++++++-.+.. ..+ ..-..+.+.+|.+
T Consensus 97 ~al~~~l~A~~~G~~-~vI~etgsGnh--G~--A~A~aaa~~Gl~~~I~m~~~d~------~~q---~~nv~~mr~~GAe 162 (402)
T PRK13028 97 NCLGQALLAKRMGKK-RLIAETGAGQH--GV--ATATAAALFGLECEIYMGEVDI------ERQ---HPNVFRMKLLGAE 162 (402)
T ss_pred HHHHHHHHHHHcCCC-eEEEecCcHHH--HH--HHHHHHHHcCCCEEEEECCCcc------hhh---HHHHHHHHHcCCE
Confidence 356666655555543 45655666653 21 1233456789998777643211 000 1123577888999
Q ss_pred EEEEe
Q 016903 231 SIRVD 235 (380)
Q Consensus 231 ~~~Vd 235 (380)
++.|+
T Consensus 163 Vi~v~ 167 (402)
T PRK13028 163 VVPVT 167 (402)
T ss_pred EEEEc
Confidence 98887
No 339
>PF01116 F_bP_aldolase: Fructose-bisphosphate aldolase class-II; InterPro: IPR000771 Fructose-bisphosphate aldolase [, ] is a glycolytic enzyme that catalyses the reversible aldol cleavage or condensation of fructose-1,6-bisphosphate into dihydroxyacetone-phosphate and glyceraldehyde 3-phosphate. There are two classes of fructose-bisphosphate aldolases with different catalytic mechanisms. Class-II aldolases [], mainly found in prokaryotes and fungi, are homodimeric enzymes, which require a divalent metal ion, generally zinc, for their activity. This family also includes the Escherichia coli galactitol operon protein, gatY, which catalyses the transformation of tagatose 1,6-bisphosphate into glycerone phosphate and D-glyceraldehyde 3-phosphate; and E. coli N-acetyl galactosamine operon protein, agaY, which catalyses the same reaction. There are two histidine residues in the first half of the sequence of these enzymes that have been shown to be involved in binding a zinc ion [].; GO: 0008270 zinc ion binding, 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3Q94_A 1RVG_B 1RV8_C 3C4U_A 3C56_B 3C52_A 2FJK_A 3N9R_P 3N9S_A 1GVF_B ....
Probab=23.47 E-value=6.8e+02 Score=24.19 Aligned_cols=112 Identities=13% Similarity=0.143 Sum_probs=69.6
Q ss_pred CCeeEEEeCccccCcchHH----HHHHHHHHcCCCEEEEEEcCCcccccccccccCCcCHHHHHhhcCceEEEEeCC--C
Q 016903 165 DACAVTYFGDGGTSEGDFH----AALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGN--D 238 (380)
Q Consensus 165 ~~~vv~~~GDG~~~eG~~~----Eal~~A~~~~Lpvi~vv~NN~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~VdG~--D 238 (380)
+.++|.-+.-+........ -...+|...+.||.+=.+-- ...+...+|-..|+.++-+||. +
T Consensus 41 ~sPvIlq~~~~~~~~~~~~~~~~~~~~~a~~~~vPValHLDH~------------~~~e~i~~ai~~GftSVM~DgS~l~ 108 (287)
T PF01116_consen 41 NSPVILQISPSEVKYMGLEYLAAMVKAAAEEASVPVALHLDHG------------KDFEDIKRAIDAGFTSVMIDGSALP 108 (287)
T ss_dssp TS-EEEEEEHHHHHHHHHHHHHHHHHHHHHHSTSEEEEEEEEE-------------SHHHHHHHHHHTSSEEEEE-TTS-
T ss_pred CCCEEEEcchhhhhhhhHHHHHHHHHHHHHHcCCCEEeecccC------------CCHHHHHHHHHhCcccccccCCcCC
Confidence 4567777776666422111 12234555677876655421 1134556777779999999984 4
Q ss_pred HHHHHHHHHHHHHHhhccCCcEEEEEEeecCCCCCCC-C----CCCCCCChhhHHHH
Q 016903 239 ALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTS-D----DSTKYRPVDEIEWW 290 (380)
Q Consensus 239 ~~av~~a~~~a~~~ar~~~gP~lIe~~t~R~~gHs~~-D----d~~~Yr~~~e~~~~ 290 (380)
.++=.+..++++++|+..+ +-||+..-+.+|.... + ....|.++++...+
T Consensus 109 ~eeNi~~T~~vv~~ah~~g--v~VEaElG~i~g~ed~~~~~~~~~~~~TdP~~a~~F 163 (287)
T PF01116_consen 109 FEENIAITREVVEYAHAYG--VSVEAELGHIGGKEDGIESEEETESLYTDPEEAKEF 163 (287)
T ss_dssp HHHHHHHHHHHHHHHHHTT---EEEEEESBSSSSCTTCSSSTT-TTCSSSHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhhC--CEEEEEeeeeeccCCCccccccccccccCHHHHHHH
Confidence 5666677788888888765 8889999888876321 1 14578888887666
No 340
>PLN02569 threonine synthase
Probab=23.43 E-value=5.2e+02 Score=27.03 Aligned_cols=50 Identities=18% Similarity=0.245 Sum_probs=29.1
Q ss_pred HHHHHcCCCEEEEEEcCCcccccccccccCCcCHHHHHhhcCceEEEEeCCCHHHHHHHHHH
Q 016903 187 NFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHA 248 (380)
Q Consensus 187 ~~A~~~~Lpvi~vv~NN~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~ 248 (380)
..|+..++++++++-.+.... .-....++||..++.|+| +.++..+.+++
T Consensus 204 ayaa~~Gl~~~I~vP~~~~~~-----------~k~~qi~a~GA~Vi~v~g-~~d~a~~~a~e 253 (484)
T PLN02569 204 AYCAAAGIPSIVFLPADKISI-----------AQLVQPIANGALVLSIDT-DFDGCMRLIRE 253 (484)
T ss_pred HHHHhcCCeEEEEEcCCCCCH-----------HHHHHHHhcCCEEEEECC-CHHHHHHHHHH
Confidence 346778999888885543211 123445677888777776 34444333333
No 341
>COG0044 PyrC Dihydroorotase and related cyclic amidohydrolases [Nucleotide transport and metabolism]
Probab=23.40 E-value=3e+02 Score=28.28 Aligned_cols=94 Identities=15% Similarity=0.141 Sum_probs=57.9
Q ss_pred eEEEeCccc--cCcchHHHHHHHHHHcCCCEEEEEEcCCcc----c-cccccc---ccC---------CcCHHHHHhhcC
Q 016903 168 AVTYFGDGG--TSEGDFHAALNFSAVTEAPVIFICRNNGWA----I-STPISD---QFR---------SDGAVVKGRAYG 228 (380)
Q Consensus 168 vv~~~GDG~--~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~----~-~~~~~~---~~~---------~~~~~~~a~a~G 228 (380)
+++|.+|+. .....+.+++..+...+.+++|-++|+... + .+.... ... ......+++..|
T Consensus 144 ~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~Ed~~~~~~~~~~~g~~~~~~~~~~~p~~aE~~~iar~~~la~~~g 223 (430)
T COG0044 144 FKGFMDDSTGALDDDVLEEALEYAAELGALILVHAEDDDLIAEGVMNEGLRAPELGLAGRPPIAEASAIARDLELARATG 223 (430)
T ss_pred eEEEecCCcCcCCHHHHHHHHHHHHhcCCeEEEecCChhHhhhHHHhcCccchhhccCCCChHHHHHHHHHHHHHHHHhC
Confidence 477888885 677788999999999999999999999521 1 111110 001 112345678888
Q ss_pred ceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEe
Q 016903 229 VRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALT 266 (380)
Q Consensus 229 ~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t 266 (380)
.++.-+.=...+++ +.++.| +..+.++-.|+.-
T Consensus 224 ~~vhi~HiSt~~sv-~li~~a----k~~g~~vt~Evtp 256 (430)
T COG0044 224 ARVHICHISTKESV-ELIRAA----KAEGIRVTAEVTP 256 (430)
T ss_pred CcEEEEEcCCHHHH-HHHHHH----hhcCCceEEeecc
Confidence 66665543344443 333333 3456788887753
No 342
>CHL00174 accD acetyl-CoA carboxylase beta subunit; Reviewed
Probab=23.16 E-value=2.2e+02 Score=27.85 Aligned_cols=43 Identities=14% Similarity=0.236 Sum_probs=29.2
Q ss_pred CCeeEEEeCccccCcchH--------HHHHHHHHHcCCCEEEEEEcCCccc
Q 016903 165 DACAVTYFGDGGTSEGDF--------HAALNFSAVTEAPVIFICRNNGWAI 207 (380)
Q Consensus 165 ~~~vv~~~GDG~~~eG~~--------~Eal~~A~~~~Lpvi~vv~NN~~~~ 207 (380)
++.|+++.-|-++..|.+ ..++.+|...++|+|++++-.+-.+
T Consensus 132 Gr~v~v~a~Dftf~gGSmG~v~geKi~ra~e~A~~~rlPlV~l~~SGGARm 182 (296)
T CHL00174 132 GIPVALGVMDFQFMGGSMGSVVGEKITRLIEYATNESLPLIIVCASGGARM 182 (296)
T ss_pred CEEEEEEEECCcccccCcCHHHHHHHHHHHHHHHHcCCCEEEEECCCCccc
Confidence 356777777766644433 3466778889999999888776433
No 343
>cd01450 vWFA_subfamily_ECM Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A
Probab=23.07 E-value=3.1e+02 Score=22.59 Aligned_cols=39 Identities=15% Similarity=0.129 Sum_probs=26.6
Q ss_pred CCCeeEEEeCccccCcc-hHHHHHHHHHHcCCCEEEEEEc
Q 016903 164 KDACAVTYFGDGGTSEG-DFHAALNFSAVTEAPVIFICRN 202 (380)
Q Consensus 164 ~~~~vv~~~GDG~~~eG-~~~Eal~~A~~~~Lpvi~vv~N 202 (380)
..+++++++.||.-..+ ...+.+......+++++.|...
T Consensus 102 ~~~~~iiliTDG~~~~~~~~~~~~~~~~~~~v~v~~i~~g 141 (161)
T cd01450 102 NVPKVIIVLTDGRSDDGGDPKEAAAKLKDEGIKVFVVGVG 141 (161)
T ss_pred CCCeEEEEECCCCCCCCcchHHHHHHHHHCCCEEEEEecc
Confidence 35678999999987654 2556666666667776666543
No 344
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=23.04 E-value=4.3e+02 Score=21.70 Aligned_cols=82 Identities=11% Similarity=0.044 Sum_probs=44.8
Q ss_pred CcchHHHHHHHHHHcCCCEEEEEE-cCCcccccccccccCCcCHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhcc
Q 016903 178 SEGDFHAALNFSAVTEAPVIFICR-NNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGE 256 (380)
Q Consensus 178 ~eG~~~Eal~~A~~~~Lpvi~vv~-NN~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~a~~~ar~~ 256 (380)
-+|.+.||++.|....-++++.+- ++.-.-...-......+.+.+.... .+-.+.+|..+.+. ++ +... .+..
T Consensus 2 f~gs~~eAl~~ak~e~K~llVylhs~~~~~~~~fc~~~l~~~~v~~~ln~-~fv~w~~dv~~~eg-~~-la~~---l~~~ 75 (116)
T cd02991 2 YQGTYSQALNDAKQELRFLLVYLHGDDHQDTDEFCRNTLCAPEVIEYINT-RMLFWACSVAKPEG-YR-VSQA---LRER 75 (116)
T ss_pred CcCcHHHHHHHHHhhCCEEEEEEeCCCCccHHHHHHHHcCCHHHHHHHHc-CEEEEEEecCChHH-HH-HHHH---hCCC
Confidence 467888999999876656544443 3321111122334455556665543 56666677766654 11 2222 2334
Q ss_pred CCcEEEEEE
Q 016903 257 GRPILIEAL 265 (380)
Q Consensus 257 ~gP~lIe~~ 265 (380)
.=|.++.+.
T Consensus 76 ~~P~~~~l~ 84 (116)
T cd02991 76 TYPFLAMIM 84 (116)
T ss_pred CCCEEEEEE
Confidence 569877764
No 345
>PRK13938 phosphoheptose isomerase; Provisional
Probab=23.00 E-value=2e+02 Score=26.15 Aligned_cols=42 Identities=12% Similarity=0.101 Sum_probs=34.6
Q ss_pred hcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCC
Q 016903 161 MDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG 204 (380)
Q Consensus 161 ~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~ 204 (380)
...++..++++..-|... .+.+++..|...+.|+|.+..|.+
T Consensus 110 ~~~~~DllI~iS~SG~t~--~vi~a~~~Ak~~G~~vI~iT~~~~ 151 (196)
T PRK13938 110 SARPGDTLFAISTSGNSM--SVLRAAKTARELGVTVVAMTGESG 151 (196)
T ss_pred cCCCCCEEEEEcCCCCCH--HHHHHHHHHHHCCCEEEEEeCCCC
Confidence 346778899999888876 378999999999999999997654
No 346
>PRK13803 bifunctional phosphoribosylanthranilate isomerase/tryptophan synthase subunit beta; Provisional
Probab=22.86 E-value=5e+02 Score=27.99 Aligned_cols=72 Identities=21% Similarity=0.147 Sum_probs=41.8
Q ss_pred HHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCcCHHHHHhhcCce
Q 016903 151 HAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVR 230 (380)
Q Consensus 151 ~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~~~~~~~~~~~~~~~~~~a~a~G~~ 230 (380)
.++|.++..+..+.+ .+++-.|-|-. |. .....|+..++++++++-.+.. ..+ ..-..+.+.+|.+
T Consensus 305 ~al~~~~~a~~~g~~-~vi~e~gsGnh--G~--A~A~~aa~~Gl~~~I~m~~~~~------~~~---~~nv~~m~~~GA~ 370 (610)
T PRK13803 305 NALGQALLAKRMGKT-RIIAETGAGQH--GV--ATATACALFGLKCTIFMGEEDI------KRQ---ALNVERMKLLGAN 370 (610)
T ss_pred HHHHHHHHHHHcCCC-EEEEecChHHH--HH--HHHHHHHHcCCcEEEEEeCCcc------cch---hhHHHHHHHCCCE
Confidence 466766655544433 45665666643 32 2234567789997777654311 111 1123578889999
Q ss_pred EEEEeC
Q 016903 231 SIRVDG 236 (380)
Q Consensus 231 ~~~VdG 236 (380)
++.|++
T Consensus 371 Vi~v~~ 376 (610)
T PRK13803 371 VIPVLS 376 (610)
T ss_pred EEEECC
Confidence 999874
No 347
>PRK12857 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=22.61 E-value=7.1e+02 Score=24.08 Aligned_cols=113 Identities=17% Similarity=0.189 Sum_probs=72.2
Q ss_pred CCeeEEEeCccccCc-c-h-HHH-HHHHHHHcCCCEEEEEEcCCcccccccccccCCcCHHHHHhhcCceEEEEeCC--C
Q 016903 165 DACAVTYFGDGGTSE-G-D-FHA-ALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGN--D 238 (380)
Q Consensus 165 ~~~vv~~~GDG~~~e-G-~-~~E-al~~A~~~~Lpvi~vv~NN~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~VdG~--D 238 (380)
+.++|.-+..+.+.. | . +.. ...+|...+.||.+=.+-- . ..+...+|-..|+.++-+||. +
T Consensus 42 ~sPvIlq~~~~~~~~~g~~~~~~~~~~~A~~~~VPValHLDH~-----------~-~~e~i~~ai~~GftSVM~DgS~lp 109 (284)
T PRK12857 42 KSPVIIQASQGAIKYAGIEYISAMVRTAAEKASVPVALHLDHG-----------T-DFEQVMKCIRNGFTSVMIDGSKLP 109 (284)
T ss_pred CCCEEEEechhHhhhCCHHHHHHHHHHHHHHCCCCEEEECCCC-----------C-CHHHHHHHHHcCCCeEEEeCCCCC
Confidence 467888888887632 2 1 112 2335566778877655321 1 112344565669999999994 5
Q ss_pred HHHHHHHHHHHHHHhhccCCcEEEEEEeecCCCCCCC---C-CCCCCCChhhHHHHH
Q 016903 239 ALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTS---D-DSTKYRPVDEIEWWR 291 (380)
Q Consensus 239 ~~av~~a~~~a~~~ar~~~gP~lIe~~t~R~~gHs~~---D-d~~~Yr~~~e~~~~~ 291 (380)
.++=.+..++.+++|+..+ +-||+..-+.+|.... + +...|.++++.+++-
T Consensus 110 ~eeNi~~T~~vv~~Ah~~g--vsVEaElG~vgg~e~~~~~~~~~~~~T~pe~a~~Fv 164 (284)
T PRK12857 110 LEENIALTKKVVEIAHAVG--VSVEAELGKIGGTEDDITVDEREAAMTDPEEARRFV 164 (284)
T ss_pred HHHHHHHHHHHHHHHHHcC--CEEEEEeeecCCccCCCCcccchhhcCCHHHHHHHH
Confidence 6777777888888887654 6788888777764322 1 123599999988874
No 348
>TIGR00512 salvage_mtnA S-methyl-5-thioribose-1-phosphate isomerase. The delineation of this family was based in part on a discussion and neighbor-joining phylogenetic study, by Kyrpides and Woese, of archaeal and other proteins homologous to the alpha, beta, and delta subunits of eukaryotic initiation factor 2B (eIF-2B), a five-subunit molecule that catalyzes GTP recycling for eIF-2. This clade is now recognized to include the methionine salvage pathway enzyme MtnA.
Probab=22.61 E-value=6e+02 Score=25.18 Aligned_cols=116 Identities=16% Similarity=0.131 Sum_probs=55.9
Q ss_pred Cccccc-chHHHHHHHHHhhhcCCCCeeEEEeCccc-cCcchHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCcC
Q 016903 142 SSTIAT-QLPHAVGAAYALKMDRKDACAVTYFGDGG-TSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDG 219 (380)
Q Consensus 142 ~g~lG~-~lp~A~G~A~A~k~~~~~~~vv~~~GDG~-~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~~~~~~~~~~~~~~ 219 (380)
+|++.. +.+-++|.=..++.++..-.|++. ++- ..||.-. ........++|+.+|++|--..+. +.... |
T Consensus 156 sg~lat~~~gtal~~l~~A~~~g~~~~V~v~--EsrP~~qG~rl-ta~~L~~~GI~vtlI~Dsav~~~m-~~~~v----d 227 (331)
T TIGR00512 156 TGSLATAGYGTALGVIRSAHEKGRLEHVYAD--ETRPRLQGARL-TAWELVQEGIPATLITDSMAAHLM-KHGEV----D 227 (331)
T ss_pred CccccccccchHHHHHHHHHHcCCceEEEEC--CCCchhhHHHH-HHHHHHHCCCCEEEEcccHHHHHh-cccCC----C
Confidence 444432 233455654444434433344444 333 2455311 112234678999988876432221 10000 1
Q ss_pred HHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCCC
Q 016903 220 AVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGH 271 (380)
Q Consensus 220 ~~~~a~a~G~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe~~t~R~~g 271 (380)
.--.|.+.+.-||.=+..+ .+..-|+ -|+..+.|+++-+.+|++.-
T Consensus 228 ----~VivGAd~v~~nG~v~nki-GT~~lA~-~Ak~~~vPfyV~a~~~kfd~ 273 (331)
T TIGR00512 228 ----AVIVGADRIAANGDTANKI-GTYQLAV-LAKHHGVPFYVAAPTSTIDL 273 (331)
T ss_pred ----EEEEcccEEecCCCEeehh-hHHHHHH-HHHHhCCCEEEecccccccc
Confidence 0114777777777322111 1122222 23346899999999988853
No 349
>COG1797 CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism]
Probab=22.43 E-value=2.9e+02 Score=28.61 Aligned_cols=57 Identities=14% Similarity=0.276 Sum_probs=35.7
Q ss_pred HHHHHHHcCCCEEEEEEcCCcccccccccccCCcCHHHHHhhc-------CceEEEEeCCCHHHHHHHHHHHHHH
Q 016903 185 ALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAY-------GVRSIRVDGNDALAIYSAVHAAREM 252 (380)
Q Consensus 185 al~~A~~~~Lpvi~vv~NN~~~~~~~~~~~~~~~~~~~~a~a~-------G~~~~~VdG~D~~av~~a~~~a~~~ 252 (380)
+..+|...++|||+||+--+.+-| .+..+++| .+.++.+|----+.=++-+++|++.
T Consensus 103 TA~lAk~l~~PVvLVid~~~~s~S-----------~AAiv~G~~~fdp~v~iaGVIlNrVgserH~~llr~Ale~ 166 (451)
T COG1797 103 TADLAKLLGAPVVLVVDASGLSRS-----------VAAIVKGFKHFDPDVNIAGVILNRVGSERHYELLRDALEE 166 (451)
T ss_pred HHHHHHHhCCCEEEEEeCcchhHH-----------HHHHHHHHHhcCCCCceEEEEEecCCCHHHHHHHHHHhhh
Confidence 467899999999999986654433 22333222 3566666532334556777888863
No 350
>TIGR00506 ribB 3,4-dihydroxy-2-butanone 4-phosphate synthase. Several members of the family are bifunctional, involving both ribA and ribB function. In these cases, ribA tends to be on the C-terminal end of the protein and ribB tends to be on the N-terminal.
Probab=22.42 E-value=2.4e+02 Score=25.88 Aligned_cols=67 Identities=18% Similarity=0.311 Sum_probs=47.5
Q ss_pred cCCCCeeEEEeCcccc--CcchHHHHHHHHHHcCC-CEEEEEE--cCCcccccccccccCCcCHHHHHhhcCceEEEEe
Q 016903 162 DRKDACAVTYFGDGGT--SEGDFHAALNFSAVTEA-PVIFICR--NNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVD 235 (380)
Q Consensus 162 ~~~~~~vv~~~GDG~~--~eG~~~Eal~~A~~~~L-pvi~vv~--NN~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~Vd 235 (380)
..|+++.....-+|.+ ..|..--++.++..-++ |+-++|+ |.. ....+.+++.+.|+.+|++.+.++
T Consensus 122 ~~PGHvfPL~a~~gGvl~R~GhTEaavdL~~lAGl~p~~vicEil~~d-------G~m~~~~~~~~fA~~~~l~~isi~ 193 (199)
T TIGR00506 122 RRPGHVFPLRAADGGVLTRGGHTEASVDLAELAGLKPAGVICEMMNDD-------GTMARKPELMEYAKKHNLKLISIE 193 (199)
T ss_pred CCCCccceEEeccCCCcCCCChHHHHHHHHHHcCCCceEEEEEEeCCC-------CCccCHHHHHHHHHHcCCcEEEHH
Confidence 3566766666767766 57888788889999998 8777775 221 122334567789999999998765
No 351
>TIGR00670 asp_carb_tr aspartate carbamoyltransferase. Ornithine carbamoyltransferases are in the same superfamily and form an outgroup.
Probab=22.40 E-value=4.5e+02 Score=25.59 Aligned_cols=192 Identities=10% Similarity=0.030 Sum_probs=91.2
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHH-HHHhcCCc-c--cccccchhhHHHHHHHhcCCCCcEEEcccccHHHHHHcCCC
Q 016903 31 VKVSEGVAIKMYNDMVTLQTMDTIFY-EAQRQGRI-S--FYLTTSGEEAINIASAAAIKNDDFVVPQYREPGVLLWRGFS 106 (380)
Q Consensus 31 ~~~~~e~l~~~y~~M~~~R~~e~~~~-~~~~~g~i-~--~~~~~~G~Ea~~~~~~~~l~~~D~v~~~yR~~~~~l~~G~~ 106 (380)
.+++++++..++......+..-..-. ...-+|+. . |+-+|.---..--..+..|+ ++.++-.-++ ...+.+|-+
T Consensus 7 ~dls~~ei~~ll~~A~~~k~~~~~~~~~~~L~gk~v~~lF~~pSTRTR~SFe~A~~~LG-g~~i~l~~~~-~s~~~kgEs 84 (301)
T TIGR00670 7 SDLSREEIELLLQTARELEQVLNGKEKLELLKGKILANLFFEPSTRTRLSFETAMKRLG-GDVVNFSDSE-TSSVAKGET 84 (301)
T ss_pred hhCCHHHHHHHHHHHHHHHhhhhcCCccccCCCCEEEEEeccCCchhHhHHHHHHHHcC-CcEEEcCCCC-cccCCCCcC
Confidence 46899999999887765554211100 00124553 2 55444433333223334455 3444443211 124556666
Q ss_pred HHHHHHHhhcCCCCC-CCCCC-Cccc-cCC-CCCCccccCcccccchHHHHHHHHHhhh-cC-CCCeeEEEeCccccCcc
Q 016903 107 MQEFANQCFGNKADY-GKGRQ-MPIH-YGS-NKHNYFTVSSTIATQLPHAVGAAYALKM-DR-KDACAVTYFGDGGTSEG 180 (380)
Q Consensus 107 ~~~~~~e~~g~~~~~-~~G~~-~~~H-~~~-~~~~~~~~~g~lG~~lp~A~G~A~A~k~-~~-~~~~vv~~~GDG~~~eG 180 (380)
+++...-+-.-.... .+... .... +.. ....+++.-...+....+++.=.+..+- .+ -+.+.|+++||+.-+ .
T Consensus 85 i~Dta~vls~y~D~iviR~~~~~~~~~~a~~s~vPVINa~~g~~~HPtQ~LaDl~Ti~e~~g~l~g~~va~vGD~~~~-~ 163 (301)
T TIGR00670 85 LADTIKTLSGYSDAIVIRHPLEGAARLAAEVSEVPVINAGDGSNQHPTQTLLDLYTIYEEFGRLDGLKIALVGDLKYG-R 163 (301)
T ss_pred HHHHHHHHHHhCCEEEEECCchhHHHHHHhhCCCCEEeCCCCCCCCcHHHHHHHHHHHHHhCCCCCCEEEEEccCCCC-c
Confidence 666544332211100 00000 0000 000 0122222211234456666665555532 22 356899999998643 2
Q ss_pred hHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCcCHHHHHhhcCceEEEEe
Q 016903 181 DFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVD 235 (380)
Q Consensus 181 ~~~Eal~~A~~~~Lpvi~vv~NN~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~Vd 235 (380)
..+.-+..++.++..|.+++- ..-.. ..++.+.++.+|..+...+
T Consensus 164 v~~Sl~~~~a~~g~~v~~~~P---------~~~~~-~~~~~~~~~~~G~~v~~~~ 208 (301)
T TIGR00670 164 TVHSLAEALTRFGVEVYLISP---------EELRM-PKEILEELKAKGIKVRETE 208 (301)
T ss_pred HHHHHHHHHHHcCCEEEEECC---------ccccC-CHHHHHHHHHcCCEEEEEC
Confidence 455557777888877776652 21111 2345566777787665555
No 352
>COG3960 Glyoxylate carboligase [General function prediction only]
Probab=22.40 E-value=2.7e+02 Score=27.88 Aligned_cols=47 Identities=11% Similarity=0.104 Sum_probs=31.7
Q ss_pred cCHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhcc-CCcEEEEEEe
Q 016903 218 DGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGE-GRPILIEALT 266 (380)
Q Consensus 218 ~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~a~~~ar~~-~gP~lIe~~t 266 (380)
.|++.+++-.---.++|- .+.-+..++++|+..+|++ .||+||+...
T Consensus 117 vdi~~ia~pv~kwavtv~--epalvp~v~qkafhlmrs~rpgpvlidlp~ 164 (592)
T COG3960 117 VDIEAIAKPVSKWAVTVR--EPALVPRVLQQAFHLMRSGRPGPVLIDLPF 164 (592)
T ss_pred hhHHHhhhhhhhhhhhhc--chhhhHHHHHHHHHHHhcCCCCCeEEeccc
Confidence 345555544322223333 7788899999999988886 4899997654
No 353
>TIGR00167 cbbA ketose-bisphosphate aldolases. fructose-bisphosphate and tagatose-bisphosphate aldolase.
Probab=22.34 E-value=7.2e+02 Score=24.06 Aligned_cols=113 Identities=19% Similarity=0.247 Sum_probs=71.7
Q ss_pred CCeeEEEeCccccCc--c--hHHHHH-HHHHHc--CCCEEEEEEcCCcccccccccccCCcCHHHHHhhcCceEEEEeCC
Q 016903 165 DACAVTYFGDGGTSE--G--DFHAAL-NFSAVT--EAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGN 237 (380)
Q Consensus 165 ~~~vv~~~GDG~~~e--G--~~~Eal-~~A~~~--~Lpvi~vv~NN~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~VdG~ 237 (380)
+.++|.-+..|.... | .+...+ ..|... +.||.+-.+--. ..+...+|-..|+.++-+||.
T Consensus 42 ~sPvIlq~~~~~~~~~~g~~~~~~~~~~~a~~~~~~VPV~lHLDHg~------------~~e~i~~ai~~GftSVMiDgS 109 (288)
T TIGR00167 42 KSPVIIQFSNGAAKYIAGLGAISAMVKAMSEAYPYGVPVALHLDHGA------------SEEDCAQAVKAGFSSVMIDGS 109 (288)
T ss_pred CCCEEEECCcchhhccCCHHHHHHHHHHHHHhccCCCcEEEECCCCC------------CHHHHHHHHHcCCCEEEecCC
Confidence 457888888887753 3 122222 234445 678776554211 123455666679999999984
Q ss_pred --CHHHHHHHHHHHHHHhhccCCcEEEEEEeecCCCCCCC----CCCCCCCChhhHHHHH
Q 016903 238 --DALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTS----DDSTKYRPVDEIEWWR 291 (380)
Q Consensus 238 --D~~av~~a~~~a~~~ar~~~gP~lIe~~t~R~~gHs~~----Dd~~~Yr~~~e~~~~~ 291 (380)
+.++=.+..++.+++|+..+ +-||+..-..+|-... ++...|.+++|.+++-
T Consensus 110 ~lp~eeNi~~T~~vv~~Ah~~g--v~VEaElG~vgg~e~~~~~~~~~~~~T~peea~~Fv 167 (288)
T TIGR00167 110 HEPFEENIELTKKVVERAHKMG--VSVEAELGTLGGEEDGVSVADESALYTDPEEAKEFV 167 (288)
T ss_pred CCCHHHHHHHHHHHHHHHHHcC--CEEEEEEeeccCccCCcccccccccCCCHHHHHHHH
Confidence 56666677788888877654 5678877777654322 1234599999988885
No 354
>TIGR01139 cysK cysteine synthase A. This model distinguishes cysteine synthase A (CysK) from cysteine synthase B (CysM). CysM differs in having a broader specificity that also allows the use of thiosulfate to produce cysteine thiosulfonate.
Probab=22.31 E-value=6.4e+02 Score=24.02 Aligned_cols=59 Identities=17% Similarity=0.172 Sum_probs=34.3
Q ss_pred HHHHcCCCEEEEEEcCCcccccccccccCCcCHHHHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcE
Q 016903 188 FSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPI 260 (380)
Q Consensus 188 ~A~~~~Lpvi~vv~NN~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~ 260 (380)
.|+.+++|+++++-.+- + +.-.+..+.||..++.+++.. .+..+++.+.+.+++.+++.
T Consensus 75 ~a~~~Gl~~~i~vp~~~-----~-------~~k~~~~~~~GA~v~~~~~~~--~~~~~~~~a~~~~~~~~~~~ 133 (298)
T TIGR01139 75 VAAARGYKLILTMPETM-----S-------IERRKLLKAYGAELVLTPGAE--GMKGAIAKAEEIAASTPNSY 133 (298)
T ss_pred HHHHcCCeEEEEeCCcc-----C-------HHHHHHHHHcCCEEEEECCCC--CHHHHHHHHHHHHHhCCCcE
Confidence 45678999888775441 1 112456788999999998752 12233444444444333334
No 355
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=22.13 E-value=6.6e+02 Score=27.08 Aligned_cols=101 Identities=15% Similarity=0.205 Sum_probs=59.2
Q ss_pred CCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcccccccc---c---ccCCcCHHHHHhhcCce--EEEE-
Q 016903 164 KDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPIS---D---QFRSDGAVVKGRAYGVR--SIRV- 234 (380)
Q Consensus 164 ~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~~~~~~~---~---~~~~~~~~~~a~a~G~~--~~~V- 234 (380)
.|-+|+++.+|-+... +..|++..|..-+.|+|+-++-- +.|.. . +....++ ..+.+|-. ++.+
T Consensus 225 tDIvVLVVAadDGVmp-QT~EaIkhAk~A~VpiVvAinKi----Dkp~a~pekv~~eL~~~gi--~~E~~GGdVQvipiS 297 (683)
T KOG1145|consen 225 TDIVVLVVAADDGVMP-QTLEAIKHAKSANVPIVVAINKI----DKPGANPEKVKRELLSQGI--VVEDLGGDVQVIPIS 297 (683)
T ss_pred ccEEEEEEEccCCccH-hHHHHHHHHHhcCCCEEEEEecc----CCCCCCHHHHHHHHHHcCc--cHHHcCCceeEEEee
Confidence 4668888888888753 57899999999999998877521 11110 0 0000011 13445543 3333
Q ss_pred --eCCCHHHHHHHHH---HHHHHhhccCCc---EEEEEEeecCCC
Q 016903 235 --DGNDALAIYSAVH---AAREMAIGEGRP---ILIEALTYRVGH 271 (380)
Q Consensus 235 --dG~D~~av~~a~~---~a~~~ar~~~gP---~lIe~~t~R~~g 271 (380)
.|.+...+.+++- +.++.-..-++| ++||..+....|
T Consensus 298 Al~g~nl~~L~eaill~Ae~mdLkA~p~g~~eg~VIES~vdkg~G 342 (683)
T KOG1145|consen 298 ALTGENLDLLEEAILLLAEVMDLKADPKGPAEGWVIESSVDKGRG 342 (683)
T ss_pred cccCCChHHHHHHHHHHHHHhhcccCCCCCceEEEEEeeecCCcc
Confidence 4788888877763 233321223455 578887776665
No 356
>PF02520 DUF148: Domain of unknown function DUF148; InterPro: IPR003677 This entry represents the domain DUF148, which has no known function.
Probab=22.12 E-value=1.4e+02 Score=24.26 Aligned_cols=35 Identities=11% Similarity=0.193 Sum_probs=23.5
Q ss_pred CCccccccccCCCccHHHHHHHHHHHHHhCCCCCC
Q 016903 341 ISDLFTDVYDVSPSNLREQEHSLRETIKKHPQDYP 375 (380)
Q Consensus 341 ~~~~~~~vy~~~~~~~~~~~~~l~~~~~~~p~~~~ 375 (380)
+..-+..+.....--..++.+.+.++...+|.+++
T Consensus 66 a~~~l~~I~~n~~lT~~q~~~~I~~l~~~~~~e~~ 100 (113)
T PF02520_consen 66 AFAKLSAILDNKSLTRQQQQEAIDALRKQYPEEVD 100 (113)
T ss_pred HHHHHHHHHcCcccCHHHHHHHHHHHHHHCCHHHH
Confidence 33444455555544566788889999999998754
No 357
>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family. This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.
Probab=22.03 E-value=7.2e+02 Score=23.99 Aligned_cols=113 Identities=15% Similarity=0.108 Sum_probs=71.6
Q ss_pred CCeeEEEeCccccCcchHHH----HHHHHHHcCCCEEEEEEcCCcccccccccccCCcCHHHHHhhcCceEEEEeCC--C
Q 016903 165 DACAVTYFGDGGTSEGDFHA----ALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGN--D 238 (380)
Q Consensus 165 ~~~vv~~~GDG~~~eG~~~E----al~~A~~~~Lpvi~vv~NN~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~VdG~--D 238 (380)
+.++|.-+..|.+....... ...+|...+.||.+=.+--. ..+...+|-..|+.++-+||. +
T Consensus 40 ~sPvIlq~s~~~~~~~~~~~~~~~~~~~a~~~~VPValHLDHg~------------~~e~i~~ai~~GFtSVM~DgS~lp 107 (282)
T TIGR01858 40 RSPVILAGTPGTFKHAGTEYIVALCSAASTTYNMPLALHLDHHE------------SLDDIRQKVHAGVRSAMIDGSHFP 107 (282)
T ss_pred CCCEEEEeCccHHhhCCHHHHHHHHHHHHHHCCCCEEEECCCCC------------CHHHHHHHHHcCCCEEeecCCCCC
Confidence 45788888888874322222 22245567788776554211 123456677779999999984 4
Q ss_pred HHHHHHHHHHHHHHhhccCCcEEEEEEeecCCCCCCC----CCCCCCCChhhHHHHH
Q 016903 239 ALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTS----DDSTKYRPVDEIEWWR 291 (380)
Q Consensus 239 ~~av~~a~~~a~~~ar~~~gP~lIe~~t~R~~gHs~~----Dd~~~Yr~~~e~~~~~ 291 (380)
.++=.+..++++++|+..+ +-||+..-+.+|-... +....|.+++|.+.+-
T Consensus 108 ~eeNi~~T~~vv~~Ah~~g--v~VEaElG~vgg~e~~~~~~~~~~~~T~peea~~Fv 162 (282)
T TIGR01858 108 FAQNVKLVKEVVDFCHRQD--CSVEAELGRLGGVEDDLSVDEEDALYTDPQEAKEFV 162 (282)
T ss_pred HHHHHHHHHHHHHHHHHcC--CeEEEEEEecCCccCCCccccchhccCCHHHHHHHH
Confidence 5666677788888877754 5677777777653321 1224588998877663
No 358
>PRK04346 tryptophan synthase subunit beta; Validated
Probab=21.88 E-value=4.8e+02 Score=26.53 Aligned_cols=72 Identities=18% Similarity=0.163 Sum_probs=40.8
Q ss_pred HHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcccccccccccCCcCHHHHHhhcCce
Q 016903 151 HAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVR 230 (380)
Q Consensus 151 ~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~~~~~~~~~~~~~~~~~~a~a~G~~ 230 (380)
.++|.++..+..+.+ .+|+-+|-|-. |. .....|+.+++++++++-.+.. ..+. .-..+.+.+|.+
T Consensus 93 ~al~~~l~A~~~Gk~-~vIaetgaGnh--G~--A~A~~aa~~Gl~c~I~mp~~d~------~rq~---~nv~~m~~lGA~ 158 (397)
T PRK04346 93 NVLGQALLAKRMGKK-RIIAETGAGQH--GV--ATATAAALLGLECVIYMGAEDV------ERQA---LNVFRMKLLGAE 158 (397)
T ss_pred HHHHHHHHHHHcCCC-eEEEecCcHHH--HH--HHHHHHHHcCCcEEEEecCCch------hhhh---hHHHHHHHCCCE
Confidence 366666665555543 45555666654 22 1233466789997777744310 1110 113567888999
Q ss_pred EEEEeC
Q 016903 231 SIRVDG 236 (380)
Q Consensus 231 ~~~VdG 236 (380)
++.|+.
T Consensus 159 Vv~v~~ 164 (397)
T PRK04346 159 VVPVTS 164 (397)
T ss_pred EEEECC
Confidence 988873
No 359
>COG0299 PurN Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]
Probab=21.79 E-value=5.7e+02 Score=23.51 Aligned_cols=80 Identities=18% Similarity=0.135 Sum_probs=48.4
Q ss_pred CeeEEEeCccccCcchHHHHHHHHHHcC-CC--EEEEEEcCCcccccccccccCCcCHHHHHhhcCceEEEEeCCCH---
Q 016903 166 ACAVTYFGDGGTSEGDFHAALNFSAVTE-AP--VIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDA--- 239 (380)
Q Consensus 166 ~~vv~~~GDG~~~eG~~~Eal~~A~~~~-Lp--vi~vv~NN~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~VdG~D~--- 239 (380)
+.+|.+.|-|+- .+++--|..-+ +| +..|+.||.= ..-.++|+.+|++...++-.+.
T Consensus 2 ki~VlaSG~GSN-----lqaiida~~~~~~~a~i~~Visd~~~------------A~~lerA~~~gIpt~~~~~k~~~~r 64 (200)
T COG0299 2 KIAVLASGNGSN-----LQAIIDAIKGGKLDAEIVAVISDKAD------------AYALERAAKAGIPTVVLDRKEFPSR 64 (200)
T ss_pred eEEEEEeCCccc-----HHHHHHHHhcCCCCcEEEEEEeCCCC------------CHHHHHHHHcCCCEEEeccccCCCH
Confidence 467777777765 35555555533 34 7777776631 1234789999999988774433
Q ss_pred HHHHHHHHHHHHHhhccCCcEEEEEEe
Q 016903 240 LAIYSAVHAAREMAIGEGRPILIEALT 266 (380)
Q Consensus 240 ~av~~a~~~a~~~ar~~~gP~lIe~~t 266 (380)
.+...++.++++ ..+|=+|.+--
T Consensus 65 ~~~d~~l~~~l~----~~~~dlvvLAG 87 (200)
T COG0299 65 EAFDRALVEALD----EYGPDLVVLAG 87 (200)
T ss_pred HHHHHHHHHHHH----hcCCCEEEEcc
Confidence 345555555554 45776666543
No 360
>TIGR00441 gmhA phosphoheptose isomerase. Involved in lipopolysaccharide biosynthesis it may have a role in virulence in Haemophilus ducreyi.
Probab=21.67 E-value=1.5e+02 Score=25.48 Aligned_cols=40 Identities=13% Similarity=0.184 Sum_probs=32.4
Q ss_pred CCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCC
Q 016903 163 RKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG 204 (380)
Q Consensus 163 ~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~ 204 (380)
+++..++++..-|... ...+++..|...+.|+|.|..|..
T Consensus 78 ~~~D~~i~iS~sG~t~--~~~~~~~~a~~~g~~ii~iT~~~~ 117 (154)
T TIGR00441 78 QKGDVLLGISTSGNSK--NVLKAIEAAKDKGMKTITLAGKDG 117 (154)
T ss_pred CCCCEEEEEcCCCCCH--HHHHHHHHHHHCCCEEEEEeCCCC
Confidence 5677888888888775 478889999999999999887543
No 361
>PF04748 Polysacc_deac_2: Divergent polysaccharide deacetylase; InterPro: IPR006837 This is a family of uncharacterised proteins that includes YibQ.; PDB: 2QV5_A 2NLY_A.
Probab=21.66 E-value=3.1e+02 Score=25.25 Aligned_cols=46 Identities=22% Similarity=0.198 Sum_probs=33.8
Q ss_pred HHHHHhhcCceEEEEe-----CCCHHHHHHHHHHHHHHhhccCCcEEEEEEe
Q 016903 220 AVVKGRAYGVRSIRVD-----GNDALAIYSAVHAAREMAIGEGRPILIEALT 266 (380)
Q Consensus 220 ~~~~a~a~G~~~~~Vd-----G~D~~av~~a~~~a~~~ar~~~gP~lIe~~t 266 (380)
....|+.+|+++.+.| -.|..++..-++++...||+ +|.++.....
T Consensus 133 a~~~A~~~gvp~~~rdvfLD~~~~~~~I~~ql~~~~~~A~~-~G~aI~Igh~ 183 (213)
T PF04748_consen 133 APQVAKELGVPAARRDVFLDNDQDEAAIRRQLDQAARIARK-QGSAIAIGHP 183 (213)
T ss_dssp HHHHHHHCT--EEE-SEETTST-SHHHHHHHHHHHHHHHHC-CSEEEEEEE-
T ss_pred HHHHHHHcCCCEEeeceecCCCCCHHHHHHHHHHHHHhhhh-cCcEEEEEcC
Confidence 4578999999998865 37889999999999999998 5778776654
No 362
>PRK08329 threonine synthase; Validated
Probab=21.47 E-value=3.7e+02 Score=26.54 Aligned_cols=39 Identities=18% Similarity=0.135 Sum_probs=26.9
Q ss_pred HHHHHcCCCEEEEEEcCCcccccccccccCCcCHHHHHhhcCceEEEEeCC
Q 016903 187 NFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGN 237 (380)
Q Consensus 187 ~~A~~~~Lpvi~vv~NN~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~VdG~ 237 (380)
..|+..++++++++-.+- ...-....+.||.+++.|+|.
T Consensus 121 ~~aa~~G~~~~v~vp~~~------------~~~k~~~~~~~GA~v~~v~~~ 159 (347)
T PRK08329 121 LYSLSEGIKVHVFVSYNA------------SKEKISLLSRLGAELHFVEGD 159 (347)
T ss_pred HHHHHcCCcEEEEECCCC------------hHHHHHHHHHcCCEEEEECCC
Confidence 345678999888875431 112235678899999999985
No 363
>cd01452 VWA_26S_proteasome_subunit 26S proteasome plays a major role in eukaryotic protein breakdown, especially for ubiquitin-tagged proteins. It is an ATP-dependent protease responsible for the bulk of non-lysosomal proteolysis in eukaryotes, often using covalent modification of proteins by ubiquitylation. It consists of a 20S proteolytic core particle (CP) and a 19S regulatory particle (RP). The CP is an ATP independent peptidase consisting of hydrolyzing activities. One or both ends of CP carry the RP that confers both ubiquitin and ATP dependence to the 26S proteosome. The RP's proposed functions include recognition of substrates and translocation of these to CP for proteolysis. The RP can dissociate into a stable lid and base subcomplexes. The base is composed of three non-ATPase subunits (Rpn 1, 2 and 10). A single residue in the vWA domain of Rpn10 has been implicated to be responsible for stabilizing the lid-base association.
Probab=21.46 E-value=2e+02 Score=26.03 Aligned_cols=35 Identities=17% Similarity=0.132 Sum_probs=24.1
Q ss_pred CeeEEEeCcc-ccCcchHHHHHHHHHHcCCCEEEEE
Q 016903 166 ACAVTYFGDG-GTSEGDFHAALNFSAVTEAPVIFIC 200 (380)
Q Consensus 166 ~~vv~~~GDG-~~~eG~~~Eal~~A~~~~Lpvi~vv 200 (380)
..+++|+|++ +..+|.+++....++..++.|-+|.
T Consensus 108 ~rivi~v~S~~~~d~~~i~~~~~~lkk~~I~v~vI~ 143 (187)
T cd01452 108 QRIVAFVGSPIEEDEKDLVKLAKRLKKNNVSVDIIN 143 (187)
T ss_pred ceEEEEEecCCcCCHHHHHHHHHHHHHcCCeEEEEE
Confidence 3667777777 6677888887777777777655444
No 364
>PF00140 Sigma70_r1_2: Sigma-70 factor, region 1.2; InterPro: IPR009042 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. ; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 1SMY_F 1IW7_P 1SIG_A 3IYD_F 2BE5_F 2A6E_F 2CW0_F 2A69_P 2A6H_P 3DXJ_P ....
Probab=21.31 E-value=1.6e+02 Score=19.15 Aligned_cols=35 Identities=26% Similarity=0.186 Sum_probs=26.1
Q ss_pred ChHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Q 016903 295 DPVTRFRKWIESNGWWNGDIESELRSSVRKQILHA 329 (380)
Q Consensus 295 DPi~~~~~~L~~~g~~t~~e~~~i~~~~~~~v~~a 329 (380)
||+..|-+.+-..-++|.+|.-++-.++++-.+.|
T Consensus 2 D~l~~Yl~ei~~~~LLt~eeE~~LA~~i~~g~~~a 36 (37)
T PF00140_consen 2 DSLRLYLKEIGRYPLLTAEEEIELARRIRKGDEAA 36 (37)
T ss_dssp HHHHHHHHHHHHS-EETTHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHcCCCCCCHHHHHHHHHHHHHhHHhc
Confidence 67888888888888999988877777777665443
No 365
>COG0777 AccD Acetyl-CoA carboxylase beta subunit [Lipid metabolism]
Probab=21.30 E-value=1.5e+02 Score=28.68 Aligned_cols=62 Identities=15% Similarity=0.247 Sum_probs=35.8
Q ss_pred CcccccchHHHHHHHHHhhhc---CCCCeeEEEeCccc--cCcchHHHHHHHHH---------HcCCCEEEEEEcCC
Q 016903 142 SSTIATQLPHAVGAAYALKMD---RKDACAVTYFGDGG--TSEGDFHAALNFSA---------VTEAPVIFICRNNG 204 (380)
Q Consensus 142 ~g~lG~~lp~A~G~A~A~k~~---~~~~~vv~~~GDG~--~~eG~~~Eal~~A~---------~~~Lpvi~vv~NN~ 204 (380)
..-+|++++.++|-.+...+. ..+-+.|||.--|+ +|||.+ .-|++|. .-+||.|.|+.|--
T Consensus 131 f~FmgGSmGsVvGeki~ra~E~A~e~k~P~v~f~aSGGARMQEg~l-SLMQMaktsaAl~~l~ea~lpyIsVLt~PT 206 (294)
T COG0777 131 FAFMGGSMGSVVGEKITRAIERAIEDKLPLVLFSASGGARMQEGIL-SLMQMAKTSAALKRLSEAGLPYISVLTDPT 206 (294)
T ss_pred ccccccchhHHHHHHHHHHHHHHHHhCCCEEEEecCcchhHhHHHH-HHHHHHHHHHHHHHHHhcCCceEEEecCCC
Confidence 345666666677766654332 23455666665555 466643 3344433 24789999987643
No 366
>PRK08558 adenine phosphoribosyltransferase; Provisional
Probab=21.23 E-value=6.8e+02 Score=23.38 Aligned_cols=107 Identities=11% Similarity=0.042 Sum_probs=58.3
Q ss_pred hHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCccccccccc---ccCC----cCHH
Q 016903 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISD---QFRS----DGAV 221 (380)
Q Consensus 149 lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~~~~~~~~---~~~~----~~~~ 221 (380)
+-..+|..++.++...+--+|+.+..|++ .=|..+|...++|++++=..+..+.....+. ..+. -.+.
T Consensus 95 ~~~~v~~~la~~~~~~~~D~Vvtv~~~GI-----~lA~~lA~~L~~p~vi~Rk~~~~~~~~~v~~y~s~s~~~~~~~~l~ 169 (238)
T PRK08558 95 FLRLIAPVVAERFMGLRVDVVLTAATDGI-----PLAVAIASYFGADLVYAKKSKETGVEKFYEEYQRLASGIEVTLYLP 169 (238)
T ss_pred HHHHHHHHHHHHccCCCCCEEEEECcccH-----HHHHHHHHHHCcCEEEEEecCCCCCcceEEEeeccCCCceeEEEec
Confidence 55677888998887544334444444444 2335578889999887655443322111110 0000 0111
Q ss_pred HHHhhcCceEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEE
Q 016903 222 VKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIE 263 (380)
Q Consensus 222 ~~a~a~G~~~~~VdG~D~~av~~a~~~a~~~ar~~~gP~lIe 263 (380)
+.+-.-|-+++-|| |+.+-=.++..+++.+++. |..++.
T Consensus 170 ~~~l~~G~rVLIVD--Dvi~TG~Tl~~~~~ll~~~-ga~vvg 208 (238)
T PRK08558 170 ASALKKGDRVLIVD--DIIRSGETQRALLDLARQA-GADVVG 208 (238)
T ss_pred HHHcCCcCEEEEEe--cccccCHHHHHHHHHHHHc-CCEEEE
Confidence 22223488999999 7766556666666655554 334443
No 367
>PF03646 FlaG: FlaG protein; InterPro: IPR005186 Although these proteins are known to be important for flagellar their exact function is unknown.; PDB: 2HC5_A.
Probab=21.07 E-value=43 Score=27.13 Aligned_cols=33 Identities=12% Similarity=0.261 Sum_probs=23.1
Q ss_pred CCCeeEEeCCC-CCCCCCCCCCCCCHHHHHHHHHHHHHH
Q 016903 11 RIPCYRVLDDD-GQPFPDSSFVKVSEGVAIKMYNDMVTL 48 (380)
Q Consensus 11 ~~~~~~~~~~~-g~~~~~~~~~~~~~e~l~~~y~~M~~~ 48 (380)
....+.|+|.+ |.++ ..+++|++++|.+.|...
T Consensus 66 ~~~vVkViD~~T~eVI-----RqIP~Ee~l~l~~~l~e~ 99 (107)
T PF03646_consen 66 GRVVVKVIDKETGEVI-----RQIPPEELLDLAKRLREL 99 (107)
T ss_dssp TEEEEEEEETTT-SEE-----EEE-HHHHHHHHHHHHHH
T ss_pred CcEEEEEEECCCCcEE-----EeCCcHHHHHHHHHHHHH
Confidence 44678889876 4443 358999999999888553
No 368
>TIGR01117 mmdA methylmalonyl-CoA decarboxylase alpha subunit. This model describes methymalonyl-CoA decarboxylase aplha subunit in archaea and bacteria. Metylmalonyl-CoA decarboxylase Na+ pump is a representative of a class of Na+ transport decarboxylases that couples the energy derived by decarboxylation of carboxylic acid substrates to drive the extrusion of Na+ ion across the membrane.
Probab=21.00 E-value=1.2e+02 Score=31.87 Aligned_cols=12 Identities=17% Similarity=-0.061 Sum_probs=6.3
Q ss_pred CCEEEEEEcCCc
Q 016903 194 APVIFICRNNGW 205 (380)
Q Consensus 194 Lpvi~vv~NN~~ 205 (380)
+|.|.+|.+..+
T Consensus 155 iP~Isvv~G~~~ 166 (512)
T TIGR01117 155 VPQISAIMGPCA 166 (512)
T ss_pred CcEEEEEecCCC
Confidence 455555555544
No 369
>cd00198 vWFA Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A domains.
Probab=20.92 E-value=3e+02 Score=22.11 Aligned_cols=38 Identities=16% Similarity=0.087 Sum_probs=26.5
Q ss_pred CCCeeEEEeCccccCcc--hHHHHHHHHHHcCCCEEEEEE
Q 016903 164 KDACAVTYFGDGGTSEG--DFHAALNFSAVTEAPVIFICR 201 (380)
Q Consensus 164 ~~~~vv~~~GDG~~~eG--~~~Eal~~A~~~~Lpvi~vv~ 201 (380)
.....+++++||....+ ...+.+..+...++.+.+|-.
T Consensus 100 ~~~~~lvvitDg~~~~~~~~~~~~~~~~~~~~v~v~~v~~ 139 (161)
T cd00198 100 NARRVIILLTDGEPNDGPELLAEAARELRKLGITVYTIGI 139 (161)
T ss_pred CCceEEEEEeCCCCCCCcchhHHHHHHHHHcCCEEEEEEc
Confidence 35678999999998655 366777777777666555443
No 370
>cd01671 CARD Caspase activation and recruitment domain: a protein-protein interaction domain. Caspase activation and recruitment domains (CARDs) are death domains (DDs) found associated with caspases. Caspases are aspartate-specific cysteine proteases with functions in apoptosis, immune signaling, inflammation, and host-defense mechanisms. In addition to caspases, proteins containing CARDs include adaptor proteins such as RAIDD, CARD9, and RIG-I-like helicases, which can form mutliprotein complexes and play important roles in mediating the signals to induce immune and inflammatory responses. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and DED (Death Effector Domain). They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=20.83 E-value=1.3e+02 Score=22.45 Aligned_cols=29 Identities=17% Similarity=0.125 Sum_probs=24.0
Q ss_pred ChHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 016903 295 DPVTRFRKWIESNGWWNGDIESELRSSVR 323 (380)
Q Consensus 295 DPi~~~~~~L~~~g~~t~~e~~~i~~~~~ 323 (380)
.++..+-.+|.++|++|.++.+.|.....
T Consensus 13 ~~~~~il~~L~~~~vlt~~e~~~i~~~~~ 41 (80)
T cd01671 13 LDVEDVLDHLLSDGVLTEEEYEKIRSEST 41 (80)
T ss_pred ccHHHHHHHHHHcCCCCHHHHHHHHcCCC
Confidence 36677788999999999999998877644
No 371
>PF06707 DUF1194: Protein of unknown function (DUF1194); InterPro: IPR010607 This family consists of several hypothetical Rhizobiales specific proteins of around 270 residues in length. The function of this family is unknown.
Probab=20.80 E-value=6.7e+02 Score=23.12 Aligned_cols=95 Identities=17% Similarity=0.050 Sum_probs=48.3
Q ss_pred chHHHHHHHHHhhhcC---CCCeeEEEeCccccCcc-hHH-HHHHHHHHcCCCEEEEEEcCCcccccccccccCCcCHHH
Q 016903 148 QLPHAVGAAYALKMDR---KDACAVTYFGDGGTSEG-DFH-AALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVV 222 (380)
Q Consensus 148 ~lp~A~G~A~A~k~~~---~~~~vv~~~GDG~~~eG-~~~-Eal~~A~~~~Lpvi~vv~NN~~~~~~~~~~~~~~~~~~~ 222 (380)
+++.|++.+..+--.. ..++||-+.|||--++| ... .+-..+...++ ++ |+..|....... ..++..
T Consensus 96 aig~Al~~a~~ll~~~~~~~~RrVIDvSGDG~~N~G~~p~~~ard~~~~~Gi--tI----NgL~I~~~~~~~--~~~L~~ 167 (205)
T PF06707_consen 96 AIGSALDFAAALLAQNPFECWRRVIDVSGDGPNNQGPRPVTSARDAAVAAGI--TI----NGLAILDDDPFG--GADLDA 167 (205)
T ss_pred hHHHHHHHHHHHHHhCCCCCceEEEEECCCCCCCCCCCccHHHHHHHHHCCe--EE----eeeEecCCCCCc--cccHHH
Confidence 3445555544432222 35799999999999999 333 22222333332 11 333333221111 113444
Q ss_pred HHhhc--CceE-EEEeCCCHHHHHHHHHHHH
Q 016903 223 KGRAY--GVRS-IRVDGNDALAIYSAVHAAR 250 (380)
Q Consensus 223 ~a~a~--G~~~-~~VdG~D~~av~~a~~~a~ 250 (380)
.++.. |-++ +.+...+..+..+++++-+
T Consensus 168 yy~~~VIgGpgAFV~~a~~~~df~~AirrKL 198 (205)
T PF06707_consen 168 YYRRCVIGGPGAFVETARGFEDFAEAIRRKL 198 (205)
T ss_pred HHhhhcccCCCceEEEcCCHHHHHHHHHHHH
Confidence 44333 3343 4555567788878777654
No 372
>PRK01792 ribB 3,4-dihydroxy-2-butanone 4-phosphate synthase; Provisional
Probab=20.79 E-value=3.1e+02 Score=25.46 Aligned_cols=67 Identities=18% Similarity=0.316 Sum_probs=48.3
Q ss_pred cCCCCeeEEEeCcccc--CcchHHHHHHHHHHcCC-CEEEEEE--cCCcccccccccccCCcCHHHHHhhcCceEEEEe
Q 016903 162 DRKDACAVTYFGDGGT--SEGDFHAALNFSAVTEA-PVIFICR--NNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVD 235 (380)
Q Consensus 162 ~~~~~~vv~~~GDG~~--~eG~~~Eal~~A~~~~L-pvi~vv~--NN~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~Vd 235 (380)
..|+++.....-+|.+ ..|..--++.+|..-++ |+-++|+ |.. ....+.+++.+.|+.+|++.+.++
T Consensus 132 ~~PGHvfPL~a~~gGvl~R~GHTEaavdLa~lAGl~p~~vicEil~~d-------G~ma~~~~~~~fA~~~~l~~isi~ 203 (214)
T PRK01792 132 HRPGHVFPLRAANGGVLTRRGHTEAAVDLARLAGYKEAGVICEITNDD-------GTMARTPEIVEFAKKFGYAVVTIE 203 (214)
T ss_pred CCCCccceEEeccCCCccCCChHHHHHHHHHHcCCCceEEEEEEecCC-------CCccCHHHHHHHHHHcCCcEEEHH
Confidence 3566777777778876 57888888899999999 8777665 321 112334567789999999998755
No 373
>PRK00910 ribB 3,4-dihydroxy-2-butanone 4-phosphate synthase; Provisional
Probab=20.77 E-value=2.9e+02 Score=25.71 Aligned_cols=66 Identities=12% Similarity=0.260 Sum_probs=46.4
Q ss_pred CCCCeeEEEeCcccc--CcchHHHHHHHHHHcCC-CEEEEEE--cCCcccccccccccCCcCHHHHHhhcCceEEEEe
Q 016903 163 RKDACAVTYFGDGGT--SEGDFHAALNFSAVTEA-PVIFICR--NNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVD 235 (380)
Q Consensus 163 ~~~~~vv~~~GDG~~--~eG~~~Eal~~A~~~~L-pvi~vv~--NN~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~Vd 235 (380)
.|+++.....=+|.+ ..|..--++.+|..-++ |+-++|+ |.. ....+.+++.+.|+.+|++.+.++
T Consensus 134 rPGHvfPL~a~~gGvl~R~GHTEaavdLa~lAGl~p~~vicEil~~d-------G~ma~~~~l~~fA~~h~l~~isi~ 204 (218)
T PRK00910 134 RPGHVFPLRARAGGVLARRGHTEGTVDLMQMAGLQPAGVLCELTNPD-------GTMAKTPEIIAFGKLHNMPVLTIE 204 (218)
T ss_pred CCCccceEEeCCCCEecCCCccHHHHHHHHHcCCCceEEEEEEecCC-------CCcCCHHHHHHHHHHcCCcEEEHH
Confidence 455655555556666 57878888999999999 8777775 321 122344667889999999998765
No 374
>cd08788 CARD_NOD2_2_CARD15 Caspase activation and recruitment domain of NOD2, repeat 2. Caspase activation and recruitment domain (CARD) similar to that found in human NOD2 (CARD15), repeat 2. NOD2 is a member of the Nod-like receptor (NLR) family, which plays a central role in the innate immune response. NLRs typically contain an N-terminal effector domain, a central nucleotide-binding domain and a C-terminal ligand-binding region of several leucine-rich repeats (LRRs). In NOD2, as well as NOD1, the N-terminal effector domain is a CARD. NOD2 contains two N-terminal CARD repeats. Mutations in NOD2 have been associated with Crohns disease and Blau syndrome. Nod2-CARDs have been shown to interact with the CARD domain of the downstream effector RICK (RIP2, CARDIAK), a serine/threonine kinase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are pr
Probab=20.73 E-value=1.9e+02 Score=22.64 Aligned_cols=26 Identities=15% Similarity=0.188 Sum_probs=23.0
Q ss_pred ChHHHHHHHHHHcCCCCHHHHHHHHH
Q 016903 295 DPVTRFRKWIESNGWWNGDIESELRS 320 (380)
Q Consensus 295 DPi~~~~~~L~~~g~~t~~e~~~i~~ 320 (380)
+-+..+=+.|.+.|.+|++|.+.|+.
T Consensus 14 ~~V~~~Ld~ll~~G~is~~Ecd~Ir~ 39 (81)
T cd08788 14 HHVDGALELLLTRGFFSSYDCDEIRL 39 (81)
T ss_pred HHHHHHHHHHHHcCCccHhhcchhhc
Confidence 55777888999999999999999987
No 375
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=20.72 E-value=3.2e+02 Score=21.93 Aligned_cols=80 Identities=16% Similarity=0.079 Sum_probs=41.9
Q ss_pred cccchHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCC-CEEEEEEcCCcccccccccccCCcCHHHH
Q 016903 145 IATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEA-PVIFICRNNGWAISTPISDQFRSDGAVVK 223 (380)
Q Consensus 145 lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~L-pvi~vv~NN~~~~~~~~~~~~~~~~~~~~ 223 (380)
.|.|.+..++..++.++...+..+.++ .|.... .......+- .+++++...++... ..+..+.
T Consensus 19 ~g~g~s~~~a~~~~~~l~~~~~~~~~~-~~~~~~-------~~~~~~~~~~~~~i~iS~~g~~~~--------~~~~~~~ 82 (139)
T cd05013 19 FGVGSSGLVAEYLAYKLLRLGKPVVLL-SDPHLQ-------LMSAANLTPGDVVIAISFSGETKE--------TVEAAEI 82 (139)
T ss_pred EEcCchHHHHHHHHHHHHHcCCceEEe-cCHHHH-------HHHHHcCCCCCEEEEEeCCCCCHH--------HHHHHHH
Confidence 455555666666666655544444443 333221 111111122 47777766554311 2345677
Q ss_pred HhhcCceEEEEeCCCHH
Q 016903 224 GRAYGVRSIRVDGNDAL 240 (380)
Q Consensus 224 a~a~G~~~~~VdG~D~~ 240 (380)
++..|++++.+.++.-.
T Consensus 83 a~~~g~~iv~iT~~~~~ 99 (139)
T cd05013 83 AKERGAKVIAITDSANS 99 (139)
T ss_pred HHHcCCeEEEEcCCCCC
Confidence 88888888888765443
No 376
>smart00114 CARD Caspase recruitment domain. Motif contained in proteins involved in apoptotic signalling. Mediates homodimerisation. Structure consists of six antiparallel helices arranged in a topology homologue to the DEATH and the DED domain.
Probab=20.67 E-value=86 Score=24.28 Aligned_cols=26 Identities=4% Similarity=0.106 Sum_probs=21.6
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHH
Q 016903 299 RFRKWIESNGWWNGDIESELRSSVRK 324 (380)
Q Consensus 299 ~~~~~L~~~g~~t~~e~~~i~~~~~~ 324 (380)
.+-.+|.++|++|+++.+.|++.-..
T Consensus 24 ~vld~L~~~~Vlt~~e~e~i~~~~t~ 49 (88)
T smart00114 24 GLLDYLVEKNVLTEKEIEAIKAATTK 49 (88)
T ss_pred HHHHHHHHcCCCCHHHHHHHHccCCh
Confidence 46789999999999999999875443
No 377
>COG1334 FlaG Uncharacterized flagellar protein FlaG [Cell motility and secretion]
Probab=20.60 E-value=1.2e+02 Score=25.61 Aligned_cols=36 Identities=14% Similarity=0.156 Sum_probs=26.4
Q ss_pred CCCCCCCeeEEeCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q 016903 7 SSEERIPCYRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMV 46 (380)
Q Consensus 7 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~e~l~~~y~~M~ 46 (380)
.+.-..+.+.|.|.+..=+- ..+++++++++|+.|.
T Consensus 74 dd~lg~~vVkI~d~~TgeVI----RqIPpee~L~l~~r~~ 109 (120)
T COG1334 74 DDELGELVVKIIDKDTGEVI----RQIPPEEALELAARMR 109 (120)
T ss_pred ecccCcEEEEEEECCCCcch----hhCChHHHHHHHHHHH
Confidence 34445678889998865222 3589999999999985
No 378
>cd08810 CARD_BCL10 Caspase activation and recruitment domain of B-cell lymphoma 10. Caspase activation and recruitment domain (CARD) similar to that found in BCL10 (B-cell lymphoma 10). BCL10 and Malt1 (mucosa-associated lymphoid tissue-lymphoma-translocation gene 1) are the integral components of CBM signalosomes. They associate with CARD9 to form M-CBM (CBM complex in myeloid immune cells) and with CARMA1 to form L-CBM (CBM complex in lymphoid immune cells), to mediate activation of NF-kB and MAPK by ITAM-coupled receptors expressed on immune cells. Both CARMA1 and CARD9 associate with BCL10 via a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by asso
Probab=20.51 E-value=1.1e+02 Score=23.99 Aligned_cols=26 Identities=15% Similarity=0.162 Sum_probs=21.7
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHH
Q 016903 297 VTRFRKWIESNGWWNGDIESELRSSV 322 (380)
Q Consensus 297 i~~~~~~L~~~g~~t~~e~~~i~~~~ 322 (380)
..++-.+|.+.|++|+++.++|.+..
T Consensus 18 ~~~l~d~L~s~~ILt~~d~EeI~~~~ 43 (84)
T cd08810 18 ADRHFDYLRSKRILTRDDCEEISCRT 43 (84)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHhccC
Confidence 34588999999999999999887744
No 379
>PRK00414 gmhA phosphoheptose isomerase; Reviewed
Probab=20.43 E-value=2.9e+02 Score=24.81 Aligned_cols=41 Identities=15% Similarity=0.239 Sum_probs=34.2
Q ss_pred cCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCC
Q 016903 162 DRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG 204 (380)
Q Consensus 162 ~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~ 204 (380)
..++.+++++..-|... .+.+++..|...+.|+|.|..|+.
T Consensus 109 ~~~~Dv~I~iS~SG~t~--~~i~~~~~ak~~g~~iI~iT~~~~ 149 (192)
T PRK00414 109 GREGDVLLGISTSGNSG--NIIKAIEAARAKGMKVITLTGKDG 149 (192)
T ss_pred CCCCCEEEEEeCCCCCH--HHHHHHHHHHHCCCeEEEEeCCCC
Confidence 35778899999999875 478999999999999999997653
No 380
>KOG4426 consensus Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=20.41 E-value=8e+02 Score=25.60 Aligned_cols=48 Identities=10% Similarity=0.190 Sum_probs=29.4
Q ss_pred CCCCCCCCCh--hhHHHHHhcCChHHHHHHHHHHcC---CCCHHHHHHHHHHH
Q 016903 275 SDDSTKYRPV--DEIEWWRTTQDPVTRFRKWIESNG---WWNGDIESELRSSV 322 (380)
Q Consensus 275 ~Dd~~~Yr~~--~e~~~~~~~~DPi~~~~~~L~~~g---~~t~~e~~~i~~~~ 322 (380)
+||..++|+. +-++-..--..-..|-...|+++| .||++|+++.++.+
T Consensus 442 GeD~KkFkTRsgetVrL~DLLdEg~kRs~~~Liergrdk~~tpeeL~~a~eav 494 (656)
T KOG4426|consen 442 GEDKKKFKTRSGETVRLLDLLDEGKKRSKEKLIERGRDKVLTPEELDAAQEAV 494 (656)
T ss_pred ccCcccccccccceeeHHHHHHHHHHHHHHHHHHhcccccCCHHHHHHHHHHH
Confidence 4666666543 323222112345667788888876 78999998776544
No 381
>PRK01322 6-carboxyhexanoate--CoA ligase; Provisional
Probab=20.34 E-value=4.1e+02 Score=25.18 Aligned_cols=76 Identities=26% Similarity=0.317 Sum_probs=45.5
Q ss_pred hHHHHHHHHHHcC-CC-EEE-EEEcCCccccc-c--cc--cccCCcCHHHHHhhcCceEEEEeCC-CHHHHHHHHHHHHH
Q 016903 181 DFHAALNFSAVTE-AP-VIF-ICRNNGWAIST-P--IS--DQFRSDGAVVKGRAYGVRSIRVDGN-DALAIYSAVHAARE 251 (380)
Q Consensus 181 ~~~Eal~~A~~~~-Lp-vi~-vv~NN~~~~~~-~--~~--~~~~~~~~~~~a~a~G~~~~~VdG~-D~~av~~a~~~a~~ 251 (380)
.+.|||.+|+.-- -| ||. +|+.+.-..+| . .. .-...+++-+...-.|..++-|++. |+.++.+-+
T Consensus 157 r~~eAlaLAsKV~~~pgivAElC~SDDP~YtTGYVA~~~~gY~RI~~mK~~G~~~GGRvffv~~~~~~~~~i~yL----- 231 (242)
T PRK01322 157 RTVDALALASKVIAHPGVIAELCWSDDPDYTTGYVATKKLGYHRITNLKEEGTPYGGRIFFVDDSIDLEELISYL----- 231 (242)
T ss_pred HHHHHHHHHHHHhcCCCeEEEEEecCCCCCeeEEEEeCCCCeEeCccccccCCCCCCEEEEEeCccCHHHHHHHH-----
Confidence 5889999998754 46 655 67644322111 1 11 1123345556667789999999985 544443322
Q ss_pred HhhccCCcEEEEEE
Q 016903 252 MAIGEGRPILIEAL 265 (380)
Q Consensus 252 ~ar~~~gP~lIe~~ 265 (380)
.+.|+||...
T Consensus 232 ----E~~pVLI~~~ 241 (242)
T PRK01322 232 ----ENKPVLIVYE 241 (242)
T ss_pred ----hcCcEEEEec
Confidence 2589999763
No 382
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=20.32 E-value=5.2e+02 Score=25.39 Aligned_cols=53 Identities=17% Similarity=0.203 Sum_probs=32.2
Q ss_pred chHHHHHHHH-HhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCC
Q 016903 148 QLPHAVGAAY-ALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG 204 (380)
Q Consensus 148 ~lp~A~G~A~-A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~ 204 (380)
.=|.++|... +.+......-+++++|.|.... . ++.+|...+.-.|++++-+.
T Consensus 150 ~epla~~~~~~a~~~~~~~~~~V~V~GaGpIGL--l--a~~~a~~~Ga~~Viv~d~~~ 203 (350)
T COG1063 150 TEPLATAYHGHAERAAVRPGGTVVVVGAGPIGL--L--AIALAKLLGASVVIVVDRSP 203 (350)
T ss_pred cChhhhhhhhhhhccCCCCCCEEEEECCCHHHH--H--HHHHHHHcCCceEEEeCCCH
Confidence 3456666333 3332222222999999999952 2 26677778877777776654
No 383
>COG0794 GutQ Predicted sugar phosphate isomerase involved in capsule formation [Cell envelope biogenesis, outer membrane]
Probab=20.25 E-value=3.1e+02 Score=25.20 Aligned_cols=20 Identities=20% Similarity=0.345 Sum_probs=13.3
Q ss_pred CHHHHHhhcCceEEEEeCCC
Q 016903 219 GAVVKGRAYGVRSIRVDGND 238 (380)
Q Consensus 219 ~~~~~a~a~G~~~~~VdG~D 238 (380)
++...++.+|.+.+-+.++-
T Consensus 104 ~~~~~aK~~g~~liaiT~~~ 123 (202)
T COG0794 104 NLAPKAKRLGAKLIAITSNP 123 (202)
T ss_pred HHHHHHHHcCCcEEEEeCCC
Confidence 45666777777777776654
No 384
>TIGR00147 lipid kinase, YegS/Rv2252/BmrU family. The E. coli member of this family, YegS has been purified and shown to have phosphatidylglycerol kinase activity. The member from M. tuberculosis, Rv2252, has diacylglycerol kinase activity. BmrU from B. subtilis is in an operon with multidrug efflux transporter Bmr, but is uncharacterized.
Probab=20.11 E-value=2.5e+02 Score=26.66 Aligned_cols=46 Identities=20% Similarity=0.160 Sum_probs=28.0
Q ss_pred CCeeEEEeCccccCcchHHHHHHHHHH-cCCCEEEEEEcCCcccccccccccCCcCHHHHHhhcCce
Q 016903 165 DACAVTYFGDGGTSEGDFHAALNFSAV-TEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVR 230 (380)
Q Consensus 165 ~~~vv~~~GDG~~~eG~~~Eal~~A~~-~~Lpvi~vv~NN~~~~~~~~~~~~~~~~~~~~a~a~G~~ 230 (380)
...+|++-|||++. |++|.... .+.|.+-++ +....-..++.+|++
T Consensus 58 ~d~ivv~GGDGTl~-----~v~~~l~~~~~~~~lgii---------------P~Gt~N~~a~~l~i~ 104 (293)
T TIGR00147 58 VDTVIAGGGDGTIN-----EVVNALIQLDDIPALGIL---------------PLGTANDFARSLGIP 104 (293)
T ss_pred CCEEEEECCCChHH-----HHHHHHhcCCCCCcEEEE---------------cCcCHHHHHHHcCCC
Confidence 35799999999875 55665443 334544444 122344667778775
No 385
>COG1424 BioW Pimeloyl-CoA synthetase [Coenzyme metabolism]
Probab=20.09 E-value=3.4e+02 Score=24.96 Aligned_cols=76 Identities=29% Similarity=0.326 Sum_probs=45.4
Q ss_pred HHHHHHHHHHcCC-C-EEE-EEEcCCccccc-ccc----cccCCcCHHHHHhhcCceEEEEeCC-CHHHHHHHHHHHHHH
Q 016903 182 FHAALNFSAVTEA-P-VIF-ICRNNGWAIST-PIS----DQFRSDGAVVKGRAYGVRSIRVDGN-DALAIYSAVHAAREM 252 (380)
Q Consensus 182 ~~Eal~~A~~~~L-p-vi~-vv~NN~~~~~~-~~~----~~~~~~~~~~~a~a~G~~~~~VdG~-D~~av~~a~~~a~~~ 252 (380)
+-+||.+|+.-++ | |+- +|+.+.-...| ... .-.+..++-....-+|..++-||+. |+......+
T Consensus 154 ~~dAlAiaskv~~hp~VvaELC~SDd~dY~TGYvagkkiGY~Rit~lKe~gt~~GgRVfFVd~~~dln~yI~~L------ 227 (239)
T COG1424 154 TVDALAIASKVNAHPGVVAELCWSDDPDYTTGYVAGKKIGYHRITDLKEVGTRYGGRVFFVDDCIDLNHYISFL------ 227 (239)
T ss_pred HHHHHHHHHhhccCcceeEEEeecCCCcceeeeeecceeeeEEeecccccCCccCcEEEEEcCcccHHHHHHHH------
Confidence 4577888887766 6 443 66644322111 111 1112345556677799999999975 665554333
Q ss_pred hhccCCcEEEEEEe
Q 016903 253 AIGEGRPILIEALT 266 (380)
Q Consensus 253 ar~~~gP~lIe~~t 266 (380)
..+|.+|+..|
T Consensus 228 ---e~kp~lIe~e~ 238 (239)
T COG1424 228 ---ESKPKLIEYET 238 (239)
T ss_pred ---hcCCEEEEEec
Confidence 25899998765
No 386
>PRK15482 transcriptional regulator MurR; Provisional
Probab=20.07 E-value=2.9e+02 Score=26.23 Aligned_cols=82 Identities=12% Similarity=0.014 Sum_probs=46.5
Q ss_pred ccccchHHHHHHHHHhhhcCCCCeeEEEeCccccCcchHHHHHHHHHHcCC-CEEEEEEcCCcccccccccccCCcCHHH
Q 016903 144 TIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEA-PVIFICRNNGWAISTPISDQFRSDGAVV 222 (380)
Q Consensus 144 ~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~L-pvi~vv~NN~~~~~~~~~~~~~~~~~~~ 222 (380)
.+|.|.+..++.-+..++..-+..+.+. .|+..+ ...+...+- .+++++...++.-. .....+
T Consensus 140 i~G~G~S~~~A~~l~~~l~~~g~~~~~~-~d~~~~-------~~~~~~~~~~Dv~i~iS~sg~t~~--------~~~~~~ 203 (285)
T PRK15482 140 ITGLGGSALVGRDLSFKLMKIGYRVACE-ADTHVQ-------ATVSQALKKGDVQIAISYSGSKKE--------IVLCAE 203 (285)
T ss_pred EEEeChhHHHHHHHHHHHHhCCCeeEEe-ccHhHH-------HHHHhcCCCCCEEEEEeCCCCCHH--------HHHHHH
Confidence 4555666667777777766555555553 344321 112222222 47777766554332 234667
Q ss_pred HHhhcCceEEEEeCCCHHH
Q 016903 223 KGRAYGVRSIRVDGNDALA 241 (380)
Q Consensus 223 ~a~a~G~~~~~VdG~D~~a 241 (380)
.|+..|++++.+.++....
T Consensus 204 ~a~~~g~~iI~IT~~~~s~ 222 (285)
T PRK15482 204 AARKQGATVIAITSLADSP 222 (285)
T ss_pred HHHHCCCEEEEEeCCCCCc
Confidence 8888899988887654333
No 387
>TIGR01275 ACC_deam_rel pyridoxal phosphate-dependent enzymes, D-cysteine desulfhydrase family. This model represents a family of pyridoxal phosphate-dependent enzymes closely related to (and often designated as putative examples of) 1-aminocyclopropane-1-carboxylate deaminase. It appears that members of this family include both D-cysteine desulfhydrase (EC 4.4.1.15) and 1-aminocyclopropane-1-carboxylate deaminase (EC 3.5.99.7).
Probab=20.04 E-value=6.8e+02 Score=23.93 Aligned_cols=55 Identities=9% Similarity=0.170 Sum_probs=30.8
Q ss_pred HHHHH-HHHcCCCEEEEEEcCCcccccccccccCCcCHHHHHhhcCceEEEEeCCCHHHHHHHHHHH
Q 016903 184 AALNF-SAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAA 249 (380)
Q Consensus 184 Eal~~-A~~~~Lpvi~vv~NN~~~~~~~~~~~~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~a 249 (380)
-++.+ |+.+++++++++..+. ....-....++||.+++.+++.+..+..+..++.
T Consensus 71 ~alA~~a~~~G~~~~ivvp~~~-----------~~~~~~~~~~~~Ga~v~~v~~~~~~~~~~~~~~~ 126 (311)
T TIGR01275 71 RATALAAKKLGLDAVLVLREKE-----------ELNGNLLLDKLMGAETRVYSAEEYFEIMKYAEEL 126 (311)
T ss_pred HHHHHHHHHhCCceEEEecCCc-----------cCCCCHHHHHHcCCEEEEECchhhhhhHHHHHHH
Confidence 34444 4568899888886531 0011123457899999988864443333333333
Done!