Query 016904
Match_columns 380
No_of_seqs 214 out of 1875
Neff 9.3
Searched_HMMs 46136
Date Fri Mar 29 03:51:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016904.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016904hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR00817 tpt Tpt phosphate/ph 100.0 1.8E-36 4E-41 282.4 29.8 285 11-304 2-296 (302)
2 PTZ00343 triose or hexose phos 100.0 1.7E-35 3.7E-40 280.0 34.5 288 9-302 47-349 (350)
3 KOG1441 Glucose-6-phosphate/ph 100.0 6E-35 1.3E-39 265.9 15.4 298 6-307 12-313 (316)
4 PLN00411 nodulin MtN21 family 100.0 9.7E-32 2.1E-36 253.4 34.2 292 6-306 8-333 (358)
5 KOG1443 Predicted integral mem 100.0 1.7E-30 3.7E-35 227.7 23.3 285 10-299 15-313 (349)
6 PRK11272 putative DMT superfam 100.0 6.5E-28 1.4E-32 223.6 33.5 281 7-303 4-287 (292)
7 PRK11689 aromatic amino acid e 100.0 1.1E-27 2.4E-32 222.3 31.7 271 7-303 4-289 (295)
8 PRK11453 O-acetylserine/cystei 100.0 1.2E-26 2.6E-31 215.8 33.6 277 7-304 4-290 (299)
9 PRK15430 putative chlorampheni 100.0 7.3E-27 1.6E-31 216.9 31.7 275 9-304 10-288 (296)
10 PRK10532 threonine and homoser 100.0 3.9E-26 8.4E-31 211.7 32.3 260 20-303 21-283 (293)
11 PF06027 DUF914: Eukaryotic pr 100.0 1.1E-26 2.4E-31 214.6 28.1 291 6-305 8-309 (334)
12 PF08449 UAA: UAA transporter 100.0 4.5E-26 9.7E-31 212.3 31.3 272 27-306 16-302 (303)
13 TIGR00950 2A78 Carboxylate/Ami 100.0 9.7E-26 2.1E-30 205.8 29.4 254 27-296 5-259 (260)
14 KOG1444 Nucleotide-sugar trans 100.0 7.3E-26 1.6E-30 201.7 25.7 296 7-309 8-308 (314)
15 TIGR03340 phn_DUF6 phosphonate 99.9 3.6E-23 7.8E-28 190.9 25.7 269 21-298 11-280 (281)
16 TIGR00688 rarD rarD protein. T 99.9 1.8E-22 4E-27 183.7 27.3 247 9-275 4-255 (256)
17 COG0697 RhaT Permeases of the 99.9 4.4E-20 9.6E-25 170.8 33.6 272 15-302 11-288 (292)
18 COG5070 VRG4 Nucleotide-sugar 99.9 2.6E-21 5.6E-26 162.6 19.0 284 14-307 9-302 (309)
19 KOG1442 GDP-fucose transporter 99.9 2E-23 4.3E-28 180.5 5.4 292 14-309 31-335 (347)
20 KOG1580 UDP-galactose transpor 99.8 2.3E-20 5.1E-25 158.1 14.6 255 39-301 48-313 (337)
21 KOG1581 UDP-galactose transpor 99.8 6.1E-18 1.3E-22 149.3 27.2 260 39-305 46-317 (327)
22 COG5006 rhtA Threonine/homoser 99.8 2.8E-18 6.1E-23 147.3 24.3 249 29-301 30-282 (292)
23 COG2962 RarD Predicted permeas 99.8 3E-17 6.5E-22 144.9 30.1 276 15-308 11-290 (293)
24 KOG4510 Permease of the drug/m 99.8 1.8E-21 4E-26 167.8 2.4 278 9-304 37-328 (346)
25 TIGR00776 RhaT RhaT L-rhamnose 99.8 2.4E-17 5.3E-22 152.3 27.9 264 10-301 4-288 (290)
26 KOG2765 Predicted membrane pro 99.8 2.3E-18 5.1E-23 155.7 17.8 226 78-304 157-393 (416)
27 KOG1582 UDP-galactose transpor 99.8 2.2E-18 4.7E-23 149.1 16.3 285 9-303 41-334 (367)
28 KOG2234 Predicted UDP-galactos 99.8 1.1E-15 2.3E-20 138.9 31.4 283 14-304 18-325 (345)
29 KOG3912 Predicted integral mem 99.8 6.4E-17 1.4E-21 140.8 22.1 280 17-301 9-334 (372)
30 PF04142 Nuc_sug_transp: Nucle 99.7 6.1E-16 1.3E-20 138.5 22.5 211 75-292 13-244 (244)
31 KOG2766 Predicted membrane pro 99.7 2.4E-18 5.1E-23 147.7 3.3 278 6-300 13-298 (336)
32 KOG1583 UDP-N-acetylglucosamin 99.6 1.3E-15 2.8E-20 132.5 11.8 251 45-303 34-316 (330)
33 PF03151 TPT: Triose-phosphate 99.6 7E-15 1.5E-19 123.0 15.2 140 161-301 1-153 (153)
34 KOG4314 Predicted carbohydrate 99.4 8.9E-13 1.9E-17 109.4 9.1 226 74-303 47-278 (290)
35 PF00892 EamA: EamA-like trans 99.4 2.1E-12 4.5E-17 103.8 9.9 120 25-151 5-125 (126)
36 COG2510 Predicted membrane pro 99.3 3.7E-11 8E-16 93.0 11.0 126 21-152 13-139 (140)
37 TIGR00803 nst UDP-galactose tr 99.2 2.5E-10 5.5E-15 101.5 12.0 190 104-299 2-222 (222)
38 PF00892 EamA: EamA-like trans 99.2 2.6E-10 5.7E-15 91.5 10.8 125 170-300 1-125 (126)
39 PF13536 EmrE: Multidrug resis 99.2 1.6E-10 3.5E-15 91.3 9.1 106 49-156 2-110 (113)
40 COG2510 Predicted membrane pro 99.1 4.1E-10 8.9E-15 87.2 9.4 135 161-300 4-138 (140)
41 PF06800 Sugar_transport: Suga 99.0 1.1E-07 2.5E-12 85.1 21.8 209 77-298 43-268 (269)
42 TIGR00950 2A78 Carboxylate/Ami 98.9 4.5E-08 9.8E-13 89.1 16.8 130 12-148 129-260 (260)
43 PRK15430 putative chlorampheni 98.8 1.5E-07 3.3E-12 87.5 16.4 138 156-300 4-144 (296)
44 TIGR03340 phn_DUF6 phosphonate 98.8 1.3E-07 2.9E-12 87.2 15.3 132 162-301 3-135 (281)
45 TIGR00688 rarD rarD protein. T 98.8 1.9E-07 4.2E-12 84.9 15.8 135 160-300 2-141 (256)
46 PLN00411 nodulin MtN21 family 98.7 1.2E-06 2.5E-11 83.3 16.5 136 161-301 14-156 (358)
47 PRK11272 putative DMT superfam 98.6 1.8E-06 3.9E-11 80.1 15.6 109 44-153 177-286 (292)
48 PRK10532 threonine and homoser 98.6 2.7E-06 5.8E-11 79.0 16.6 131 12-151 149-280 (293)
49 PRK15051 4-amino-4-deoxy-L-ara 98.6 2.1E-06 4.5E-11 67.3 12.5 64 88-151 45-108 (111)
50 PRK13499 rhamnose-proton sympo 98.5 0.00023 5E-09 66.6 25.9 222 75-302 69-342 (345)
51 PF03151 TPT: Triose-phosphate 98.4 1.7E-05 3.7E-10 65.9 16.3 136 15-151 4-152 (153)
52 PRK11689 aromatic amino acid e 98.4 9.6E-06 2.1E-10 75.4 15.9 129 14-152 159-287 (295)
53 PF05653 Mg_trans_NIPA: Magnes 98.4 5.3E-06 1.2E-10 76.8 12.9 66 87-152 57-122 (300)
54 TIGR00817 tpt Tpt phosphate/ph 98.4 4.4E-06 9.5E-11 77.9 12.0 138 12-152 146-293 (302)
55 PRK11453 O-acetylserine/cystei 98.3 2.9E-05 6.2E-10 72.3 16.7 139 12-152 144-287 (299)
56 PTZ00343 triose or hexose phos 98.2 6.7E-05 1.5E-09 71.4 17.3 138 158-300 47-185 (350)
57 PRK02971 4-amino-4-deoxy-L-ara 98.2 7.5E-05 1.6E-09 60.0 14.4 119 160-301 2-122 (129)
58 PRK02971 4-amino-4-deoxy-L-ara 98.0 3.8E-05 8.2E-10 61.7 8.6 72 83-154 51-124 (129)
59 PF13536 EmrE: Multidrug resis 98.0 0.00019 4.2E-09 56.4 11.7 67 235-303 41-108 (113)
60 COG2962 RarD Predicted permeas 97.9 0.00054 1.2E-08 61.5 14.2 139 158-302 5-145 (293)
61 PRK15051 4-amino-4-deoxy-L-ara 97.8 0.00092 2E-08 52.3 13.6 59 241-300 50-108 (111)
62 TIGR00776 RhaT RhaT L-rhamnose 97.8 0.00046 9.9E-09 63.9 13.1 126 12-151 153-287 (290)
63 PRK10452 multidrug efflux syst 97.8 0.00015 3.2E-09 57.2 8.1 70 84-153 34-104 (120)
64 COG4975 GlcU Putative glucose 97.7 9.8E-06 2.1E-10 70.4 1.2 218 71-301 51-285 (288)
65 PF08449 UAA: UAA transporter 97.7 0.0009 2E-08 62.4 14.2 128 173-305 13-140 (303)
66 COG0697 RhaT Permeases of the 97.7 0.0031 6.7E-08 57.9 17.0 138 159-302 6-144 (292)
67 COG5006 rhtA Threonine/homoser 97.6 0.0017 3.7E-08 57.0 13.1 131 11-149 148-279 (292)
68 PF04657 DUF606: Protein of un 97.6 0.0043 9.3E-08 50.5 14.5 132 162-298 3-138 (138)
69 KOG2922 Uncharacterized conser 97.6 0.0006 1.3E-08 62.0 10.2 69 85-153 69-137 (335)
70 PRK09541 emrE multidrug efflux 97.5 0.0012 2.6E-08 51.4 10.1 68 85-152 35-103 (110)
71 PF06027 DUF914: Eukaryotic pr 97.5 0.0027 5.9E-08 59.5 14.4 141 159-302 12-152 (334)
72 PRK10650 multidrug efflux syst 97.5 0.0016 3.5E-08 50.4 10.6 67 84-150 39-106 (109)
73 PRK11431 multidrug efflux syst 97.5 0.0017 3.7E-08 50.1 10.7 68 84-151 33-101 (105)
74 COG2076 EmrE Membrane transpor 97.5 0.0011 2.4E-08 50.6 9.3 69 84-152 34-103 (106)
75 PF06800 Sugar_transport: Suga 97.3 0.0065 1.4E-07 54.8 13.7 68 81-148 196-267 (269)
76 PF07857 DUF1632: CEO family ( 97.1 0.0014 2.9E-08 58.8 7.2 132 161-305 1-138 (254)
77 PF04657 DUF606: Protein of un 97.0 0.042 9.1E-07 44.8 14.5 120 24-149 14-138 (138)
78 PF00893 Multi_Drug_Res: Small 97.0 0.0041 8.9E-08 47.0 7.6 58 86-143 35-93 (93)
79 COG3238 Uncharacterized protei 96.9 0.062 1.3E-06 44.0 13.9 137 159-299 4-144 (150)
80 PF04142 Nuc_sug_transp: Nucle 96.9 0.0044 9.6E-08 55.7 8.1 75 228-303 17-91 (244)
81 PRK10452 multidrug efflux syst 96.8 0.0097 2.1E-07 47.0 8.7 56 245-301 47-103 (120)
82 PRK09541 emrE multidrug efflux 96.8 0.012 2.6E-07 45.8 8.7 55 246-301 48-103 (110)
83 KOG1441 Glucose-6-phosphate/ph 96.7 0.004 8.7E-08 57.7 6.8 142 10-152 162-307 (316)
84 PRK13499 rhamnose-proton sympo 96.6 0.047 1E-06 51.3 12.7 139 158-304 5-156 (345)
85 PRK10650 multidrug efflux syst 96.6 0.083 1.8E-06 41.0 12.0 55 245-300 52-107 (109)
86 TIGR00803 nst UDP-galactose tr 96.4 0.058 1.3E-06 47.8 12.1 66 84-149 156-221 (222)
87 PF10639 UPF0546: Uncharacteri 96.4 0.012 2.5E-07 45.8 6.2 69 81-150 43-112 (113)
88 KOG2234 Predicted UDP-galactos 96.3 0.2 4.4E-06 46.6 15.0 137 163-300 18-163 (345)
89 PRK11431 multidrug efflux syst 96.2 0.061 1.3E-06 41.5 9.1 55 246-301 47-102 (105)
90 COG2076 EmrE Membrane transpor 96.0 0.069 1.5E-06 40.9 8.7 55 247-302 49-104 (106)
91 PF05653 Mg_trans_NIPA: Magnes 95.9 0.068 1.5E-06 49.6 10.0 118 158-301 5-122 (300)
92 COG3238 Uncharacterized protei 95.9 0.38 8.3E-06 39.4 13.0 134 13-151 7-145 (150)
93 KOG2765 Predicted membrane pro 95.5 0.21 4.6E-06 46.7 11.2 144 11-155 247-393 (416)
94 KOG1580 UDP-galactose transpor 94.9 0.083 1.8E-06 46.1 6.5 131 168-304 21-160 (337)
95 PF00893 Multi_Drug_Res: Small 94.8 0.12 2.5E-06 39.0 6.4 48 244-292 45-93 (93)
96 KOG1581 UDP-galactose transpor 93.9 0.77 1.7E-05 41.9 10.5 136 10-149 171-310 (327)
97 KOG4510 Permease of the drug/m 93.8 0.065 1.4E-06 47.7 3.5 74 73-147 247-320 (346)
98 PF10639 UPF0546: Uncharacteri 92.4 0.33 7E-06 37.8 5.2 53 245-298 58-111 (113)
99 COG5070 VRG4 Nucleotide-sugar 92.3 1.6 3.6E-05 38.0 9.7 127 17-147 161-291 (309)
100 COG4975 GlcU Putative glucose 91.9 0.11 2.4E-06 45.7 2.3 96 51-150 184-283 (288)
101 PF06379 RhaT: L-rhamnose-prot 91.7 7.5 0.00016 36.4 13.9 141 159-305 6-157 (344)
102 KOG1444 Nucleotide-sugar trans 91.2 1.8 3.9E-05 39.8 9.4 138 12-152 158-300 (314)
103 PRK13108 prolipoprotein diacyl 89.6 22 0.00049 35.0 19.2 24 281-304 254-277 (460)
104 PF07168 Ureide_permease: Urei 87.9 0.71 1.5E-05 42.1 4.1 73 228-302 72-147 (336)
105 PF05297 Herpes_LMP1: Herpesvi 85.9 0.24 5.1E-06 44.4 0.0 83 104-187 47-133 (381)
106 KOG4314 Predicted carbohydrate 85.6 0.56 1.2E-05 40.0 2.1 62 240-302 65-126 (290)
107 PF10225 DUF2215: Uncharacteri 82.9 14 0.00031 33.2 10.1 47 248-297 115-161 (249)
108 KOG3912 Predicted integral mem 81.8 20 0.00044 32.6 10.3 67 234-301 92-158 (372)
109 PRK06638 NADH:ubiquinone oxido 81.7 24 0.00051 30.6 10.7 47 160-213 30-77 (198)
110 PF04342 DUF486: Protein of un 80.7 23 0.0005 27.1 9.9 52 99-150 54-106 (108)
111 PRK02237 hypothetical protein; 80.1 25 0.00054 27.0 11.3 40 114-153 67-106 (109)
112 PRK02237 hypothetical protein; 79.7 11 0.00025 28.8 6.9 47 256-303 61-107 (109)
113 PF07857 DUF1632: CEO family ( 79.6 47 0.001 30.0 14.2 102 43-152 26-134 (254)
114 PF02694 UPF0060: Uncharacteri 76.9 9.8 0.00021 29.1 5.8 47 256-303 59-105 (107)
115 KOG2922 Uncharacterized conser 75.9 0.65 1.4E-05 42.7 -0.8 119 158-302 19-137 (335)
116 KOG1443 Predicted integral mem 71.7 86 0.0019 29.1 11.9 54 97-150 260-313 (349)
117 PF02694 UPF0060: Uncharacteri 69.8 14 0.00029 28.4 5.1 40 114-153 65-104 (107)
118 TIGR02865 spore_II_E stage II 68.4 1.6E+02 0.0034 31.4 14.6 44 107-150 11-54 (764)
119 KOG1442 GDP-fucose transporter 67.4 10 0.00022 34.4 4.7 105 44-148 215-323 (347)
120 COG1742 Uncharacterized conser 63.7 47 0.001 25.3 6.9 40 114-153 66-105 (109)
121 KOG4831 Unnamed protein [Funct 61.4 10 0.00022 28.9 3.1 62 90-151 62-124 (125)
122 COG3086 RseC Positive regulato 61.0 26 0.00056 28.4 5.5 28 249-276 69-96 (150)
123 PF06379 RhaT: L-rhamnose-prot 60.6 1.5E+02 0.0033 27.9 26.8 221 80-301 73-340 (344)
124 TIGR00892 2A0113 monocarboxyla 59.7 1.8E+02 0.0039 28.5 13.2 14 284-297 402-415 (455)
125 PF09656 PGPGW: Putative trans 58.3 39 0.00084 22.4 5.0 46 135-185 4-49 (53)
126 PF03547 Mem_trans: Membrane t 58.0 1.7E+02 0.0038 27.8 13.2 10 264-273 111-120 (385)
127 PRK10263 DNA translocase FtsK; 56.7 3.4E+02 0.0074 30.8 14.9 21 233-253 142-162 (1355)
128 PF03348 Serinc: Serine incorp 56.6 2.1E+02 0.0045 28.2 21.6 25 278-302 280-304 (429)
129 PF08507 COPI_assoc: COPI asso 53.6 34 0.00074 27.5 5.3 30 269-300 75-104 (136)
130 KOG1582 UDP-galactose transpor 52.7 1.2E+02 0.0026 27.7 8.8 53 102-154 282-334 (367)
131 PRK10666 ammonium transporter; 51.7 2.5E+02 0.0053 27.6 17.0 46 127-174 273-319 (428)
132 KOG1583 UDP-N-acetylglucosamin 50.0 64 0.0014 29.5 6.6 138 7-150 160-312 (330)
133 TIGR00939 2a57 Equilibrative N 47.9 2.8E+02 0.0061 27.2 14.3 14 287-300 180-193 (437)
134 PF15471 TMEM171: Transmembran 46.7 35 0.00075 30.7 4.4 25 282-306 160-184 (319)
135 PF04342 DUF486: Protein of un 46.4 27 0.00059 26.7 3.3 29 269-298 77-105 (108)
136 PF06123 CreD: Inner membrane 43.8 3.3E+02 0.0071 26.8 14.0 122 160-299 300-421 (430)
137 PF12794 MscS_TM: Mechanosensi 42.7 3E+02 0.0065 26.0 11.2 13 116-128 60-72 (340)
138 COG2323 Predicted membrane pro 42.3 2.3E+02 0.0051 25.0 9.0 79 45-129 4-82 (224)
139 PF15050 SCIMP: SCIMP protein 40.8 1.4E+02 0.0031 23.4 6.4 20 284-303 9-32 (133)
140 KOG4583 Membrane-associated ER 39.9 1.2E+02 0.0026 28.4 6.9 7 270-276 275-281 (391)
141 KOG3762 Predicted transporter 39.0 2.3E+02 0.0049 28.9 9.1 18 284-301 529-548 (618)
142 COG1742 Uncharacterized conser 38.6 70 0.0015 24.4 4.4 45 257-302 61-105 (109)
143 PF06570 DUF1129: Protein of u 37.8 2.7E+02 0.0058 24.1 11.0 24 161-184 112-135 (206)
144 PF15345 TMEM51: Transmembrane 36.7 75 0.0016 28.1 4.9 22 287-308 67-88 (233)
145 COG3169 Uncharacterized protei 35.8 1.9E+02 0.0042 21.8 10.6 32 120-151 83-114 (116)
146 PF03729 DUF308: Short repeat 35.1 1.2E+02 0.0025 20.7 5.1 26 138-163 2-27 (72)
147 PRK11715 inner membrane protei 34.4 4.6E+02 0.01 25.8 13.2 122 160-299 306-427 (436)
148 PF11139 DUF2910: Protein of u 34.3 3.1E+02 0.0067 23.8 10.6 37 114-150 160-209 (214)
149 PF06123 CreD: Inner membrane 33.3 4.8E+02 0.01 25.7 13.8 59 126-186 317-377 (430)
150 TIGR01167 LPXTG_anchor LPXTG-m 32.8 41 0.00088 19.5 2.0 20 278-297 7-26 (34)
151 TIGR00905 2A0302 transporter, 32.7 4.9E+02 0.011 25.6 11.0 121 181-309 320-442 (473)
152 MTH00057 ND6 NADH dehydrogenas 32.5 3.2E+02 0.0069 23.3 8.6 25 269-294 132-156 (186)
153 PF11044 TMEMspv1-c74-12: Plec 32.3 65 0.0014 20.3 2.7 18 281-298 2-19 (49)
154 COG3169 Uncharacterized protei 32.0 1E+02 0.0022 23.3 4.2 29 270-299 85-113 (116)
155 PRK11715 inner membrane protei 31.8 5.1E+02 0.011 25.5 13.4 58 127-186 324-383 (436)
156 KOG4831 Unnamed protein [Funct 31.4 44 0.00095 25.6 2.3 52 247-299 71-123 (125)
157 COG4657 RnfA Predicted NADH:ub 30.3 3.3E+02 0.0071 22.8 10.5 64 119-182 84-154 (193)
158 PF04246 RseC_MucC: Positive r 30.0 1.2E+02 0.0026 24.2 5.0 24 253-276 66-89 (135)
159 PF06570 DUF1129: Protein of u 29.0 3.8E+02 0.0082 23.2 10.4 24 159-182 178-201 (206)
160 PF05961 Chordopox_A13L: Chord 27.7 67 0.0014 22.3 2.5 21 284-304 5-25 (68)
161 PF05038 Cytochrom_B558a: Cyto 27.1 7.4 0.00016 32.5 -2.6 50 247-302 74-123 (186)
162 PF04341 DUF485: Protein of un 26.9 2.6E+02 0.0057 20.6 6.9 57 11-67 20-78 (91)
163 KOG1935 Membrane protein Patch 25.7 8.7E+02 0.019 26.3 15.9 24 159-182 916-939 (1143)
164 PRK15432 autoinducer 2 ABC tra 25.6 2.8E+02 0.0061 26.3 7.3 22 282-303 287-308 (344)
165 KOG4812 Golgi-associated prote 24.1 3.4E+02 0.0073 24.3 6.7 20 281-300 219-238 (262)
166 PF15330 SIT: SHP2-interacting 22.4 3.7E+02 0.008 20.7 6.7 20 285-304 5-25 (107)
167 TIGR00806 rfc RFC reduced fola 22.3 8.2E+02 0.018 24.7 12.0 38 234-271 364-401 (511)
168 PF06365 CD34_antigen: CD34/Po 21.8 2.8E+02 0.0061 24.1 5.9 16 289-304 112-127 (202)
169 PF00909 Ammonium_transp: Ammo 21.5 7.4E+02 0.016 23.9 11.1 197 119-328 162-393 (399)
170 COG2814 AraJ Arabinose efflux 21.4 7.6E+02 0.016 24.0 14.9 132 103-239 44-181 (394)
171 PRK10862 SoxR reducing system 21.2 2.4E+02 0.0051 23.3 5.2 16 257-272 77-92 (154)
172 TIGR02611 conserved hypothetic 20.3 2.8E+02 0.0061 21.9 5.0 44 136-184 29-72 (121)
No 1
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=100.00 E-value=1.8e-36 Score=282.39 Aligned_cols=285 Identities=20% Similarity=0.329 Sum_probs=236.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCcHHHHHHHHHHHHHHHHHHHHHHhhccCCCcccHHhhhHHhhhHHHHH
Q 016904 11 LTYLYLLIYILLSSGVILYNKWVLSPKYFNFPFPITLTMIHMGFSGVVAFFLVRVFKVVSPVKMTFEIYATCVVPISAFF 90 (380)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~k~~l~~~~~~~~~p~~~~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (380)
.....+++|++.+++++++||++++ ++++|.++++.|++++.+++.+... .+.+++++.++++ ++..++.|+++
T Consensus 2 ~~~~~~~~w~~~~~~~~~~NK~~l~----~~~~P~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~g~~~ 75 (302)
T TIGR00817 2 QTGLLFGLWYFLNVYFNIYNKKLLN----VFPYPYFKTLISLAVGSLYCLLSWS-SGLPKRLKISSAL-LKLLLPVAIVH 75 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh----hCChhHHHHHHHHHHHHHHHHHHHH-hCCCCCCCCCHHH-HHHHHHHHHHH
Confidence 3566899999999999999999999 7889999999999998777655522 2233445566666 68888999999
Q ss_pred HHHHHHHhhhhhcccHhHHHHHHHHHHHHHHHHHHHhccccccHhHHHHHHHHHhhhheeeeccceehHHHHHHHHHHHH
Q 016904 91 ASSLWFGNTAYLHISVAFIQMLKALMPVATFFMAVLCGTDKARLDVFLNMVLVSVGVVISSYGEIHFNIVGTLYQVTGIV 170 (380)
Q Consensus 91 ~~~~~~~~~al~~~~~~~~~il~~~~pi~v~ll~~~~l~ek~~~~~~~~v~l~~~Gv~l~~~~~~~~~~~G~~l~l~s~~ 170 (380)
+....+.|+|++|++++.+++++++.|+++++++++++|||++++++.+++++++|+++....+.+.+..|+++++++++
T Consensus 76 ~~~~~~~~~~l~~~s~s~~~li~~~~Pv~~~ll~~~~~~e~~~~~~~~~l~l~~~Gv~l~~~~~~~~~~~G~~~~l~a~~ 155 (302)
T TIGR00817 76 TIGHVTSNVSLSKVAVSFTHTIKAMEPFFSVVLSAFFLGQEFPSTLWLSLLPIVGGVALASDTELSFNWAGFLSAMISNI 155 (302)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHhcchHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhhhcCCcccccHHHHHHHHHHHH
Confidence 88999999999999999999999999999999999999999999999999999999998776666677889999999999
Q ss_pred HHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHHHHHhhcCCccccc---c-----chhhHHH-HHHHHH-HHHH
Q 016904 171 AEALRLVLTQVLLQKKGLTLNPITSLYYIAPCSFVFLFVPWYLLEKPMMEVS---Q-----IQFNFWI-FFSNAL-CALA 240 (380)
Q Consensus 171 ~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~---~-----~~~~~~~-~~~~~~-~~~~ 240 (380)
+|++|.++.||..++ .++|+..++.|+...+++.++|.....|++..... . .....+. .+..+. +...
T Consensus 156 ~~a~~~v~~k~~~~~--~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (302)
T TIGR00817 156 TFVSRNIFSKKAMTI--KSLDKTNLYAYISIMSLFLLSPPAFITEGPPFLPHGFMQAISGVNVTKIYTVSLVAAMGFFHF 233 (302)
T ss_pred HHHHHHHHHHHhhcc--CCCCcccHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHH
Confidence 999999999998663 23688999999999999999998776664332111 0 1111222 223333 3444
Q ss_pred HHHHHHHHHhhcchhHHHHhhhhhhHHHHHHHHHhcCCCCcchhhhHHHHHHHHHHHHHHHhhh
Q 016904 241 LNFSIFLVIGRTGAVTIRVAGVLKDWILIALSTVIFPESTITGLNIIGYAIALCGVVMYNYIKV 304 (380)
Q Consensus 241 ~~~~~~~~i~~~~a~~~s~~~~l~~v~~~~~~~l~~~~~~~~~~~~~G~~lii~g~~~~~~~~~ 304 (380)
.+..++.++++++|+++++.++++|++++++|++++ ||++++.+++|+++++.|+++|++.|.
T Consensus 234 ~~~~~~~~l~~~sa~t~sv~~~l~pv~~~~~~~~~l-ge~lt~~~~~G~~lil~Gv~l~~~~k~ 296 (302)
T TIGR00817 234 YQQVAFMLLGRVSPLTHSVGNCMKRVVVIVVSILFF-GTKISPQQVFGTGIAIAGVFLYSRVKA 296 (302)
T ss_pred HHHHHHHHHccCCchHHHHHhhhhhhheeeeehhhc-CCCCchhHHHHHHHHHHHHHHHHHHhc
Confidence 556677899999999999999999999999999999 667999999999999999999986543
No 2
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=100.00 E-value=1.7e-35 Score=279.98 Aligned_cols=288 Identities=18% Similarity=0.260 Sum_probs=243.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCcHHHHHHHHHHHHHHHHHHHHHHhhccCCCccc-HHhhhHHhhhHH
Q 016904 9 LVLTYLYLLIYILLSSGVILYNKWVLSPKYFNFPFPITLTMIHMGFSGVVAFFLVRVFKVVSPVKMT-FEIYATCVVPIS 87 (380)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~k~~l~~~~~~~~~p~~~~~~r~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 87 (380)
.+...+++++|+.+++..++.||++++ .+|+|++++.+|++++++++.++.. .+.+++++.+ ++++++.+++.|
T Consensus 47 ~~~~~~~~~~wy~~s~~~~~~nK~vl~----~~~~P~~l~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~llp~g 121 (350)
T PTZ00343 47 KWKLALLFLTWYALNVLYVVDNKLALN----MLPLPWTISSLQLFVGWLFALLYWA-TGFRKIPRIKSLKLFLKNFLPQG 121 (350)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHH----hCChhHHHHHHHHHHHHHHHHHHHH-hCCCCCCCCCCHHHHHHHHHHHH
Confidence 567888999999999999999999999 7899999999999999887655532 3333334443 455578899999
Q ss_pred HHHHHHHHHHhhhhhcccHhHHHHHHHHHHHHHHHHHHHhccccccHhHHHHHHHHHhhhheeeeccceehHHHHHHHHH
Q 016904 88 AFFASSLWFGNTAYLHISVAFIQMLKALMPVATFFMAVLCGTDKARLDVFLNMVLVSVGVVISSYGEIHFNIVGTLYQVT 167 (380)
Q Consensus 88 ~~~~~~~~~~~~al~~~~~~~~~il~~~~pi~v~ll~~~~l~ek~~~~~~~~v~l~~~Gv~l~~~~~~~~~~~G~~l~l~ 167 (380)
+++...+...+.|+++++++.+++++++.|+++++++++++|||++++++++++++++|+++.+.++.++++.|++++++
T Consensus 122 l~~~~~~~~~~~sl~~~svs~~~iika~~Pvft~lls~~~l~ek~s~~~~l~l~l~v~Gv~l~~~~~~~~~~~G~~~~l~ 201 (350)
T PTZ00343 122 LCHLFVHFGAVISMGLGAVSFTHVVKAAEPVFTALLSILFLKQFLNLYAYLSLIPIVGGVALASVKELHFTWLAFWCAML 201 (350)
T ss_pred HHHHHHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHheecccchhHHHHHHHHHH
Confidence 99887777788999999999999999999999999999999999999999999999999999998888888999999999
Q ss_pred HHHHHHHHHHHHHHHhhhCC---CCCCHHHHHHHHHHHHHHHHHHHHHhhcCCcccc---------cc--chhhHHHHHH
Q 016904 168 GIVAEALRLVLTQVLLQKKG---LTLNPITSLYYIAPCSFVFLFVPWYLLEKPMMEV---------SQ--IQFNFWIFFS 233 (380)
Q Consensus 168 s~~~~a~~~v~~~~~~~~~~---~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~---------~~--~~~~~~~~~~ 233 (380)
|++++|++.++.|+.+++++ .++++..+..++.+.+.++++|.....|...... .. +...++.++.
T Consensus 202 s~~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lp~~~~~e~~~~~~~~~~~~~~~~~~~~~~~l~~i~~ 281 (350)
T PTZ00343 202 SNLGSSLRSIFAKKTMKNKSEIGENLTASNIYMLLTLIASLISLPLVLFFEGKKWVPVWTNYTANMTNYTKGIIIFKIFF 281 (350)
T ss_pred HHHHHHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhcccccchHHHHHHHHH
Confidence 99999999999999987643 1366777778888899999999877666432110 01 1122344566
Q ss_pred HHHHHHHHHHHHHHHHhhcchhHHHHhhhhhhHHHHHHHHHhcCCCCcchhhhHHHHHHHHHHHHHHHh
Q 016904 234 NALCALALNFSIFLVIGRTGAVTIRVAGVLKDWILIALSTVIFPESTITGLNIIGYAIALCGVVMYNYI 302 (380)
Q Consensus 234 ~~~~~~~~~~~~~~~i~~~~a~~~s~~~~l~~v~~~~~~~l~~~~~~~~~~~~~G~~lii~g~~~~~~~ 302 (380)
+++..+..+.+.+.++++++|.++++.++++|++++++|++++ +|++++.+++|.++++.|+++|++.
T Consensus 282 s~l~~~l~n~~~f~~l~~~s~~t~sv~~~lk~V~~iv~s~l~~-ge~lt~~~~iG~~lii~Gv~lYs~~ 349 (350)
T PTZ00343 282 SGVWYYLYNEVAFYCLGKVNQVTHAVANTLKRVVIIVSSIIIF-QTQVTLLGYLGMAVAILGALLYSLF 349 (350)
T ss_pred HHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhhhHHHh-CCCCchHhHHHHHHHHHHHHHHhhc
Confidence 7777788888888999999999999999999999999999999 6779999999999999999999864
No 3
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=100.00 E-value=6e-35 Score=265.89 Aligned_cols=298 Identities=36% Similarity=0.569 Sum_probs=264.9
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCcHHHHHHHHHHHHHHHHHHHHHHhhccCCCcccHHhhhHHhhh
Q 016904 6 NKPLVLTYLYLLIYILLSSGVILYNKWVLSPKYFNFPFPITLTMIHMGFSGVVAFFLVRVFKVVSPVKMTFEIYATCVVP 85 (380)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~k~~l~~~~~~~~~p~~~~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (380)
.++.+.....+..|++++++.++.||++++ .++|++|.+++..+++.+.+.+ .+.+..+..++.+.+.+.+++.+++
T Consensus 12 ~~~~~~~~~~~~~w~~~~v~~~~~nK~il~--~~~f~~p~~lt~~~~~~~~l~~-~v~~~l~~~~~~~~~~~~~~~~llp 88 (316)
T KOG1441|consen 12 LKKILRIGIAFAIWYVLSVGVIILNKYILS--KYGFPFPITLTMLHLFCGALAL-LVIKVLKLVPPSKISSKLPLRTLLP 88 (316)
T ss_pred cchhHHHHHHHHHHhhhheeeEEeeHhhhc--cCCCCCccHHHHHHHHHHHHHH-HHHHHhcCCCCCccccccchHHHHH
Confidence 445677888899999999999999999999 5899999999999887665544 4455566667777767777899999
Q ss_pred HHHHHHHHHHHHhhhhhcccHhHHHHHHHHHHHHHHHHHHHhccccccHhHHHHHHHHHhhhheeeeccceehHHHHHHH
Q 016904 86 ISAFFASSLWFGNTAYLHISVAFIQMLKALMPVATFFMAVLCGTDKARLDVFLNMVLVSVGVVISSYGEIHFNIVGTLYQ 165 (380)
Q Consensus 86 ~~~~~~~~~~~~~~al~~~~~~~~~il~~~~pi~v~ll~~~~l~ek~~~~~~~~v~l~~~Gv~l~~~~~~~~~~~G~~l~ 165 (380)
.+++++++.++.|.++.|+|++++++++++.|+++.++++++.+|+.++..+++++....|+++....|.++|+.|.+.+
T Consensus 89 l~~~~~~~~v~~n~Sl~~v~VsF~q~iKa~~P~~tvl~~~~~~~~~~s~~~~lsL~piv~GV~ias~~e~~fn~~G~i~a 168 (316)
T KOG1441|consen 89 LGLVFCISHVLGNVSLSYVPVSFYQTIKALMPPFTVLLSVLLLGKTYSSMTYLSLLPIVFGVAIASVTELSFNLFGFISA 168 (316)
T ss_pred HHHHHHHHHHhcchhhhccchhHHHHHHhhcchhHHHHHHHHhCCCCcceEEEEEEEeeeeEEEeeeccccccHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHHHHH-HHHHhhcCCcc---ccccchhhHHHHHHHHHHHHHH
Q 016904 166 VTGIVAEALRLVLTQVLLQKKGLTLNPITSLYYIAPCSFVFLF-VPWYLLEKPMM---EVSQIQFNFWIFFSNALCALAL 241 (380)
Q Consensus 166 l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~-~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 241 (380)
+++.+..++++++.++++++++.++|+.+++.|+...+.+.++ |.....|+... ....|....+..++..++++..
T Consensus 169 ~~s~~~~al~~I~~~~ll~~~~~~~~~~~ll~y~ap~s~~~Ll~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~sv~~f~~ 248 (316)
T KOG1441|consen 169 MISNLAFALRNILSKKLLTSKGESLNSMNLLYYTAPISLIFLLIPFLDYVEGNKFVGFLTAPWFVTFLILLLNSVLAFLL 248 (316)
T ss_pred HHHHHHHHHHHHHHHHhhhccccccCchHHHHHhhhHHHHHHhcchHhhhcccceeeeeccccchhhHHHHHHHHHHHHH
Confidence 9999999999999999998777889999999999999999999 76666666554 3334555555556666999999
Q ss_pred HHHHHHHHhhcchhHHHHhhhhhhHHHHHHHHHhcCCCCcchhhhHHHHHHHHHHHHHHHhhhhhh
Q 016904 242 NFSIFLVIGRTGAVTIRVAGVLKDWILIALSTVIFPESTITGLNIIGYAIALCGVVMYNYIKVKDV 307 (380)
Q Consensus 242 ~~~~~~~i~~~~a~~~s~~~~l~~v~~~~~~~l~~~~~~~~~~~~~G~~lii~g~~~~~~~~~~~~ 307 (380)
|...|+++.+++|++.++.+.++.+++++.|+++| +++.++.+..|+++.++|+.+|++.|.+++
T Consensus 249 Nls~f~~ig~tSalT~~V~g~~K~~~vi~~s~~iF-~~pvt~~n~~G~~iai~Gv~~Y~~~k~~~~ 313 (316)
T KOG1441|consen 249 NLSAFLVIGRTSALTYSVAGHMKRIVVIVVSWLIF-GNPVTFLNALGYAIAILGVFLYSRAKLKEK 313 (316)
T ss_pred HHHHHHHHcccCchhhhhhccceEEEEEEeEeeee-cCCCchhhHHHHHHHHHHHHHHHHHhhhhh
Confidence 99999999999999999999999999999999999 558999999999999999999998876543
No 4
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=100.00 E-value=9.7e-32 Score=253.40 Aligned_cols=292 Identities=9% Similarity=0.089 Sum_probs=224.2
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCcHHHHHHHHHHHHHHHHHHHHHHhhc-cCCCcccHHhhhHHhh
Q 016904 6 NKPLVLTYLYLLIYILLSSGVILYNKWVLSPKYFNFPFPITLTMIHMGFSGVVAFFLVRVFKV-VSPVKMTFEIYATCVV 84 (380)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~k~~l~~~~~~~~~p~~~~~~r~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~ 84 (380)
+|+..+..+.++.-.+...++..+.|..++ .+++ |+.+.++|++++++++.++.+..++ +++++.++++ +..+.
T Consensus 8 ~~~~~~~~~~~~~~q~~~~~~~~~~k~a~~---~G~~-~~~~~~~R~~iA~l~Ll~~~~~~~~~~~~~~~~~~~-~~~l~ 82 (358)
T PLN00411 8 WRREAVFLTAMLATETSVVGISTLFKVATS---KGLN-IYPFLGYSYLLASLLLLPSLFFTNRSRSLPPLSVSI-LSKIG 82 (358)
T ss_pred hhhccchHHHHHHHHHHHHHHHHHHHHHHH---CCCC-ccHHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHH-HHHHH
Confidence 444566677778888888888889999987 4676 9999999999999999888765443 2234445666 45555
Q ss_pred hHHHHHHHHHHHHhhhhhcccHhHHHHHHHHHHHHHHHHHHHh------ccccccHhHHHHHHHHHhhhheeeec-cc--
Q 016904 85 PISAFFASSLWFGNTAYLHISVAFIQMLKALMPVATFFMAVLC------GTDKARLDVFLNMVLVSVGVVISSYG-EI-- 155 (380)
Q Consensus 85 ~~~~~~~~~~~~~~~al~~~~~~~~~il~~~~pi~v~ll~~~~------l~ek~~~~~~~~v~l~~~Gv~l~~~~-~~-- 155 (380)
..+++....+.+.++|++|++++.++++.++.|++++++++++ +|||+++++++|++++++|+.++... +.
T Consensus 83 l~g~~g~~~~~~~~~gl~~tsa~~asll~~~~P~~~~lla~~~~~e~~~~~er~~~~~~~G~~l~~~Gv~ll~~~~g~~~ 162 (358)
T PLN00411 83 LLGFLGSMYVITGYIGIEYSNPTLASAISNITPALTFILAIIFRMEKVSFKERSSVAKVMGTILSLIGALVVIFYHGPRV 162 (358)
T ss_pred HHHHHHHHHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHHhchhhhcccccHHHHHHHHHHHHHHHHHHHccCccc
Confidence 5666555566789999999999999999999999999999999 69999999999999999999876532 10
Q ss_pred ---------------------eeh-HHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHHHHHh
Q 016904 156 ---------------------HFN-IVGTLYQVTGIVAEALRLVLTQVLLQKKGLTLNPITSLYYIAPCSFVFLFVPWYL 213 (380)
Q Consensus 156 ---------------------~~~-~~G~~l~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~ 213 (380)
..+ ..|++++++++++||+|++++|+..++.+ +.....+++..++.+.+.++...
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~l~l~aa~~wa~~~il~~~~~~~~~---~~~~~t~~~~~~~~~~~~~~~l~ 239 (358)
T PLN00411 163 FVASSPPYLNFRQLSPPLSSSNSDWLIGGALLTIQGIFVSVSFILQAHIMSEYP---AAFTVSFLYTVCVSIVTSMIGLV 239 (358)
T ss_pred ccccccccccccccccccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC---cHhHHHHHHHHHHHHHHHHHHHH
Confidence 112 45999999999999999999999877632 33455666666666666555555
Q ss_pred hcCCccc--cccchhhHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHhhhhhhHHHHHHHHHhcCCCCcchhhhHHHHH
Q 016904 214 LEKPMME--VSQIQFNFWIFFSNALCALALNFSIFLVIGRTGAVTIRVAGVLKDWILIALSTVIFPESTITGLNIIGYAI 291 (380)
Q Consensus 214 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~a~~~s~~~~l~~v~~~~~~~l~~~~~~~~~~~~~G~~l 291 (380)
.+..... ...+....+.+++.++.+.+.+.++++++++.+|.+++++.+++|++++++|++++ +|++++.+++|+++
T Consensus 240 ~~~~~~~~~~~~~~~~~~~i~y~~i~t~lay~lw~~~v~~~ga~~as~~~~L~PV~a~llg~l~L-gE~lt~~~~iG~~L 318 (358)
T PLN00411 240 VEKNNPSVWIIHFDITLITIVTMAIITSVYYVIHSWTVRHKGPLYLAIFKPLSILIAVVMGAIFL-NDSLYLGCLIGGIL 318 (358)
T ss_pred HccCCcccceeccchHHHHHHHHHHHHHHHHHHHHHHHhccCchHHHHHHhHHHHHHHHHHHHHh-CCCCcHHHHHHHHH
Confidence 5432211 11222223334444555556677789999999999999999999999999999999 77799999999999
Q ss_pred HHHHHHHHHHhhhhh
Q 016904 292 ALCGVVMYNYIKVKD 306 (380)
Q Consensus 292 ii~g~~~~~~~~~~~ 306 (380)
|+.|+++..+.+++|
T Consensus 319 Il~Gv~l~~~~~~~~ 333 (358)
T PLN00411 319 ITLGFYAVMWGKANE 333 (358)
T ss_pred HHHHHHHHHhhhhhh
Confidence 999999988755444
No 5
>KOG1443 consensus Predicted integral membrane protein [Function unknown]
Probab=99.98 E-value=1.7e-30 Score=227.70 Aligned_cols=285 Identities=26% Similarity=0.443 Sum_probs=253.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCcHHHHHHHHHHHHHHHHHHHHHHhhccCC---CcccHHhhhHHhhhH
Q 016904 10 VLTYLYLLIYILLSSGVILYNKWVLSPKYFNFPFPITLTMIHMGFSGVVAFFLVRVFKVVSP---VKMTFEIYATCVVPI 86 (380)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~k~~l~~~~~~~~~p~~~~~~r~~~~~~~l~~~~~~~~~~~~---~~~~~~~~~~~~~~~ 86 (380)
++.++++.+|++++++..+++|+.-. +|++|++++.+|+++-.++.....+..++..+ ...+|+++++++.|.
T Consensus 15 V~~L~lVl~yY~~Si~Ltf~~~~~~~----~f~fPLf~ts~h~~v~flfa~~~~~l~~~~~~r~r~~~sw~~~Lr~~aPt 90 (349)
T KOG1443|consen 15 VLTLALVLLYYFLSIGLTFYFKWLTK----NFHFPLFVTSLHLAVKFLFAALSRRLYQCSVPRARVVLSWRDYLRRLAPT 90 (349)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhc----CcCCchHHHHHHHHHHHHHHHHHHHHHhccCCccccCCcHHHHHHHhhhh
Confidence 45666779999999999888888877 89999999999999988887777766555443 368899999999999
Q ss_pred HHHHHHHHHHHhhhhhcccHhHHHHHHHHHHHHHHHHHHHhccccccHhHHHHHHHHHhhhheeeeccceehHHHHHHHH
Q 016904 87 SAFFASSLWFGNTAYLHISVAFIQMLKALMPVATFFMAVLCGTDKARLDVFLNMVLVSVGVVISSYGEIHFNIVGTLYQV 166 (380)
Q Consensus 87 ~~~~~~~~~~~~~al~~~~~~~~~il~~~~pi~v~ll~~~~l~ek~~~~~~~~v~l~~~Gv~l~~~~~~~~~~~G~~l~l 166 (380)
++..++..++.||+++|+|.+.+++.+++.++|+.+++.++.-||+++.-.+.++++.+|+++.++.+.+++..|..+++
T Consensus 91 alata~DIGLSN~sl~yVtlSlYTM~KSSsi~FIllFs~if~lEk~~w~L~l~v~lI~~Glflft~KsTqf~i~Gf~lv~ 170 (349)
T KOG1443|consen 91 ALATALDIGLSNWSLEYVTLSLYTMTKSSSILFILLFSLIFKLEKFRWALVLIVLLIAVGLFLFTYKSTQFNIEGFFLVL 170 (349)
T ss_pred hhhhhcccccccceeeeeeeeeeeeccccHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhheeEEEecccceeehhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhCC-CCCCHHHHHHHHHHHHHHHHHHHHHhhcCCccccc------cch----hhHHHHHHHH
Q 016904 167 TGIVAEALRLVLTQVLLQKKG-LTLNPITSLYYIAPCSFVFLFVPWYLLEKPMMEVS------QIQ----FNFWIFFSNA 235 (380)
Q Consensus 167 ~s~~~~a~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~------~~~----~~~~~~~~~~ 235 (380)
+++++.++++.+.+.++++.+ .+-+|...+++.++...+.++|..+..|++..... ... .....+..+|
T Consensus 171 ~aS~~sGlRW~~tQ~ll~~~~~~~~~P~~ti~~l~p~M~~~Ll~~~l~fEG~~~~~~s~~f~~~d~~~~~rv~g~i~l~g 250 (349)
T KOG1443|consen 171 AASLLSGLRWAFTQMLLRNQPSAKRNPIDTIFHLQPWMSIGLLPLSLLFEGLHLITSSSIFRFQDTGLILRVIGLISLGG 250 (349)
T ss_pred HHHHhhhhhHHHHHHHHhcCccccCCCeeeHHHhhhHHHHHHHHHHHHHcccccchhhhHHHhcCccHHHHHHHHHHHHH
Confidence 999999999999999999876 34589999999999999999999998998765411 111 1123456788
Q ss_pred HHHHHHHHHHHHHHhhcchhHHHHhhhhhhHHHHHHHHHhcCCCCcchhhhHHHHHHHHHHHHH
Q 016904 236 LCALALNFSIFLVIGRTGAVTIRVAGVLKDWILIALSTVIFPESTITGLNIIGYAIALCGVVMY 299 (380)
Q Consensus 236 ~~~~~~~~~~~~~i~~~~a~~~s~~~~l~~v~~~~~~~l~~~~~~~~~~~~~G~~lii~g~~~~ 299 (380)
..++..-.+.+..+.+++..+.++.+..+.+.+.+++..+. ++.++..+|.|..+++.|+..+
T Consensus 251 ~laF~l~~sEflLl~~Ts~ltlSIaGI~Kel~tl~la~ii~-~d~ls~lN~~Gl~i~~agi~~~ 313 (349)
T KOG1443|consen 251 LLAFLLEFSEFLLLSRTSSLTLSIAGIVKEVCTLLLAIIIL-KDQLSLLNWLGLAICLAGILLH 313 (349)
T ss_pred HHHHHHHHHHHheeeeccceeeeHHHHHHHHHHHHHHHHHh-hcchhhhHHHHHHHHHHHHHHh
Confidence 88998888899999999999999999999999999999999 5569999999999999999987
No 6
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=99.97 E-value=6.5e-28 Score=223.57 Aligned_cols=281 Identities=12% Similarity=0.107 Sum_probs=208.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCcHHHHHHHHHHHHHHHHHHHHHHhhccCCCcccHHhhhHHhhhH
Q 016904 7 KPLVLTYLYLLIYILLSSGVILYNKWVLSPKYFNFPFPITLTMIHMGFSGVVAFFLVRVFKVVSPVKMTFEIYATCVVPI 86 (380)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~k~~l~~~~~~~~~p~~~~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (380)
|+.+...+..++-.+.+.+.....|...+ +.+ |..++++|++++.+++.++....++ + +.++++ ++.....
T Consensus 4 ~~~~~~~~~~~~~~~iWg~~~~~~K~~~~----~~~-p~~~~~~R~~~a~l~ll~~~~~~~~-~--~~~~~~-~~~~~~~ 74 (292)
T PRK11272 4 RQLLPLFGALFALYIIWGSTYLVIRIGVE----SWP-PLMMAGVRFLIAGILLLAFLLLRGH-P--LPTLRQ-WLNAALI 74 (292)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHhc----cCC-HHHHHHHHHHHHHHHHHHHHHHhCC-C--CCcHHH-HHHHHHH
Confidence 44444444444444555556668899998 888 9999999999999888777653221 1 223444 3444445
Q ss_pred HHH-HHHHHHHHhhhh-hcccHhHHHHHHHHHHHHHHHHHHHhccccccHhHHHHHHHHHhhhheeeec-cceehHHHHH
Q 016904 87 SAF-FASSLWFGNTAY-LHISVAFIQMLKALMPVATFFMAVLCGTDKARLDVFLNMVLVSVGVVISSYG-EIHFNIVGTL 163 (380)
Q Consensus 87 ~~~-~~~~~~~~~~al-~~~~~~~~~il~~~~pi~v~ll~~~~l~ek~~~~~~~~v~l~~~Gv~l~~~~-~~~~~~~G~~ 163 (380)
|.+ ....+.+.+++. ++++++.++++.++.|+++++++.+ +|||++++++++++++++|+.++..+ +.+.+..|++
T Consensus 75 g~~~~~~~~~~~~~~~~~~~~a~~a~~l~~~~Pl~~~lla~~-~~e~~~~~~~~~~~la~~Gv~ll~~~~~~~~~~~G~l 153 (292)
T PRK11272 75 GLLLLAVGNGMVTVAEHQNVPSGIAAVVVATVPLFTLCFSRL-FGIRTRKLEWLGIAIGLAGIVLLNSGGNLSGNPWGAI 153 (292)
T ss_pred HHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHH-hcccCchhHHHHHHHHHHhHHHHhcCcccccchHHHH
Confidence 554 456677888898 9999999999999999999999986 69999999999999999999887654 2344567999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHHHHHhhcCCccccccchhhHHHHHHHHHHHHHHHH
Q 016904 164 YQVTGIVAEALRLVLTQVLLQKKGLTLNPITSLYYIAPCSFVFLFVPWYLLEKPMMEVSQIQFNFWIFFSNALCALALNF 243 (380)
Q Consensus 164 l~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (380)
++++++++||++.+..||..++ ++.....++..++.+.+.+.....+.+...........+++..+.+.+...+.
T Consensus 154 ~~l~a~~~~a~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~i~~s~~~~~ 228 (292)
T PRK11272 154 LILIASASWAFGSVWSSRLPLP-----VGMMAGAAEMLAAGVVLLIASLLSGERLTALPTLSGFLALGYLAVFGSIIAIS 228 (292)
T ss_pred HHHHHHHHHHHHHHHHHhcCCC-----cchHHHHHHHHHHHHHHHHHHHHcCCcccccCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999986332 33445667777777777666554333211111111222233333334445566
Q ss_pred HHHHHHhhcchhHHHHhhhhhhHHHHHHHHHhcCCCCcchhhhHHHHHHHHHHHHHHHhh
Q 016904 244 SIFLVIGRTGAVTIRVAGVLKDWILIALSTVIFPESTITGLNIIGYAIALCGVVMYNYIK 303 (380)
Q Consensus 244 ~~~~~i~~~~a~~~s~~~~l~~v~~~~~~~l~~~~~~~~~~~~~G~~lii~g~~~~~~~~ 303 (380)
++++++++.++.+++.+.+++|+++.+++++++ +|++++.+++|+++++.|+++.++.+
T Consensus 229 l~~~~~~~~~~~~~s~~~~l~Pi~a~i~~~~~l-~E~~t~~~iiG~~lIi~gv~~~~~~~ 287 (292)
T PRK11272 229 AYMYLLRNVRPALATSYAYVNPVVAVLLGTGLG-GETLSPIEWLALGVIVFAVVLVTLGK 287 (292)
T ss_pred HHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHc-CCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 788899999999999999999999999999999 77799999999999999999876643
No 7
>PRK11689 aromatic amino acid exporter; Provisional
Probab=99.97 E-value=1.1e-27 Score=222.26 Aligned_cols=271 Identities=15% Similarity=0.127 Sum_probs=197.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCcHHHHHHHHHHHHHHHHHHHHHHhhccCCCcccHHhhhHHhhhH
Q 016904 7 KPLVLTYLYLLIYILLSSGVILYNKWVLSPKYFNFPFPITLTMIHMGFSGVVAFFLVRVFKVVSPVKMTFEIYATCVVPI 86 (380)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~k~~l~~~~~~~~~p~~~~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (380)
|+.+.....+++|... ....|..++ ++| |+.+.++|+.++.+++.++.. +++.++.+ ++..+..
T Consensus 4 ~~~l~~l~a~~~Wg~~----~~~~k~~~~----~~~-P~~~~~~R~~~a~l~l~~~~~---~~~~~~~~----~~~~~~~ 67 (295)
T PRK11689 4 KATLIGLIAILLWSTM----VGLIRGVSE----SLG-PVGGAAMIYSVSGLLLLLTVG---FPRLRQFP----KRYLLAG 67 (295)
T ss_pred chhHHHHHHHHHHHHH----HHHHHHHHc----cCC-hHHHHHHHHHHHHHHHHHHcc---cccccccc----HHHHHHH
Confidence 4455555666777655 447799999 899 999999999999888776531 11111111 2334445
Q ss_pred HHHHHHHHHHHhhhhhc----ccHhHHHHHHHHHHHHHHHHHHHhccccccHhHHHHHHHHHhhhheeeeccce------
Q 016904 87 SAFFASSLWFGNTAYLH----ISVAFIQMLKALMPVATFFMAVLCGTDKARLDVFLNMVLVSVGVVISSYGEIH------ 156 (380)
Q Consensus 87 ~~~~~~~~~~~~~al~~----~~~~~~~il~~~~pi~v~ll~~~~l~ek~~~~~~~~v~l~~~Gv~l~~~~~~~------ 156 (380)
++.+.....+.+.+++| ++++.++++.++.|+++.+++++++|||++++++++++++++|++++..++..
T Consensus 68 ~l~~~~~~~~~~~a~~~~~~~~~a~~a~~l~~~~Pi~~~ll~~~~~~e~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~ 147 (295)
T PRK11689 68 GLLFVSYEICLALSLGYANTRRQAIEVGMVNYLWPSLTILFAVLFNGQKANWLLIPGLLLALAGVAWVLGGDNGLSLAEL 147 (295)
T ss_pred hHHHHHHHHHHHHHHHHhhccccchHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHHHHhHhheecCCccchhhhh
Confidence 55566677777777754 57788899999999999999999999999999999999999999988765421
Q ss_pred -----ehHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHHHHHhhcCCccccccchhhHHHH
Q 016904 157 -----FNIVGTLYQVTGIVAEALRLVLTQVLLQKKGLTLNPITSLYYIAPCSFVFLFVPWYLLEKPMMEVSQIQFNFWIF 231 (380)
Q Consensus 157 -----~~~~G~~l~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~ 231 (380)
.+..|++++++++++||.|.++.||..++ .++..... ..+.+.+.+.....+.+.. ...+.. +..+
T Consensus 148 ~~~~~~~~~G~~~~l~aa~~~A~~~v~~k~~~~~----~~~~~~~~---~~~~~~l~~~~~~~~~~~~-~~~~~~-~~~l 218 (295)
T PRK11689 148 INNIASNPLSYGLAFIGAFIWAAYCNVTRKYARG----KNGITLFF---ILTALALWIKYFLSPQPAM-VFSLPA-IIKL 218 (295)
T ss_pred hhccccChHHHHHHHHHHHHHHHHHHHHhhccCC----CCchhHHH---HHHHHHHHHHHHHhcCccc-cCCHHH-HHHH
Confidence 23569999999999999999999998543 35544322 2223333333333222211 112222 2223
Q ss_pred HHHHHHHHHHHHHHHHHHhhcchhHHHHhhhhhhHHHHHHHHHhcCCCCcchhhhHHHHHHHHHHHHHHHhh
Q 016904 232 FSNALCALALNFSIFLVIGRTGAVTIRVAGVLKDWILIALSTVIFPESTITGLNIIGYAIALCGVVMYNYIK 303 (380)
Q Consensus 232 ~~~~~~~~~~~~~~~~~i~~~~a~~~s~~~~l~~v~~~~~~~l~~~~~~~~~~~~~G~~lii~g~~~~~~~~ 303 (380)
++.++.+...+.++++++++.+|..++.+.+++|+++++++++++ ||++++.+++|+++|+.|+++..+.+
T Consensus 219 ~~~~~~t~~~~~l~~~al~~~~a~~~s~~~~l~Pv~a~i~~~~~l-gE~~~~~~~iG~~lI~~gv~~~~~~~ 289 (295)
T PRK11689 219 LLAAAAMGFGYAAWNVGILHGNMTLLATASYFTPVLSAALAALLL-STPLSFSFWQGVAMVTAGSLLCWLAT 289 (295)
T ss_pred HHHHHHHHHHHHHHHHHHHccCHHHHHHHHHhHHHHHHHHHHHHh-CCCCcHHHHHHHHHHHHhHHHHhhhH
Confidence 344556666778899999999999999999999999999999999 77799999999999999998876543
No 8
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=99.96 E-value=1.2e-26 Score=215.79 Aligned_cols=277 Identities=13% Similarity=0.183 Sum_probs=197.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCcHHHHHHHHHHHHHHHHHHHHHHhhccCCCcccHHhhhHHhhhH
Q 016904 7 KPLVLTYLYLLIYILLSSGVILYNKWVLSPKYFNFPFPITLTMIHMGFSGVVAFFLVRVFKVVSPVKMTFEIYATCVVPI 86 (380)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~k~~l~~~~~~~~~p~~~~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (380)
++.+..++..++|...+. ..|..++ +++ |..+.++|++++++++.++.+ + ++.+++ ..+..
T Consensus 4 ~~~l~~l~~~~~Wg~~~~----~~k~~~~----~~~-p~~~~~~R~~~a~~~l~~~~~--~----~~~~~~----~~~~~ 64 (299)
T PRK11453 4 KDGVLALLVVVVWGLNFV----VIKVGLH----NMP-PLMLAGLRFMLVAFPAIFFVA--R----PKVPLN----LLLGY 64 (299)
T ss_pred HHHHHHHHHHHHHhhhHH----HHHHHHh----cCC-HHHHHHHHHHHHHHHHHHHhc--C----CCCchH----HHHHH
Confidence 444555666677766544 6688888 888 999999999998766554432 1 122222 22333
Q ss_pred HHHH-HHHHHHHhhhhhc-ccHhHHHHHHHHHHHHHHHHHHHhccccccHhHHHHHHHHHhhhheeeecc---ceehHHH
Q 016904 87 SAFF-ASSLWFGNTAYLH-ISVAFIQMLKALMPVATFFMAVLCGTDKARLDVFLNMVLVSVGVVISSYGE---IHFNIVG 161 (380)
Q Consensus 87 ~~~~-~~~~~~~~~al~~-~~~~~~~il~~~~pi~v~ll~~~~l~ek~~~~~~~~v~l~~~Gv~l~~~~~---~~~~~~G 161 (380)
+++. .....+++.+++| +|++.++++.++.|+++.+++++++|||++++++++++++++|+.++..++ ...++.|
T Consensus 65 g~~~~~~~~~~~~~~~~~~~~a~~a~~l~~~~pi~~~ll~~~~l~e~~~~~~~~~~~l~~~Gv~ll~~~~~~~~~~~~~G 144 (299)
T PRK11453 65 GLTISFGQFAFLFCAINFGMPAGLASLVLQAQAFFTIVLGAFTFGERLQGKQLAGIALAIFGVLVLIEDSLNGQHVAMLG 144 (299)
T ss_pred HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhHHHhccccCCCcchhHHH
Confidence 4433 3444567788887 689999999999999999999999999999999999999999999887542 2234679
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHHHHHhhcCCcc-----ccccchhhHHHHHHHHH
Q 016904 162 TLYQVTGIVAEALRLVLTQVLLQKKGLTLNPITSLYYIAPCSFVFLFVPWYLLEKPMM-----EVSQIQFNFWIFFSNAL 236 (380)
Q Consensus 162 ~~l~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~ 236 (380)
++++++++++|+.+.++.|+..++. ...+......+....+.+.........+++.. ....+.....++..+.+
T Consensus 145 ~~l~l~aal~~a~~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~i~ 223 (299)
T PRK11453 145 FMLTLAAAFSWACGNIFNKKIMSHS-TRPAVMSLVVWSALIPIIPFFVASLILDGSATMIHSLVTIDMTTILSLMYLAFV 223 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccc-CccchhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhhccCCHHHHHHHHHHHHH
Confidence 9999999999999999999975542 12233344455555544433333333343221 01111122223333344
Q ss_pred HHHHHHHHHHHHHhhcchhHHHHhhhhhhHHHHHHHHHhcCCCCcchhhhHHHHHHHHHHHHHHHhhh
Q 016904 237 CALALNFSIFLVIGRTGAVTIRVAGVLKDWILIALSTVIFPESTITGLNIIGYAIALCGVVMYNYIKV 304 (380)
Q Consensus 237 ~~~~~~~~~~~~i~~~~a~~~s~~~~l~~v~~~~~~~l~~~~~~~~~~~~~G~~lii~g~~~~~~~~~ 304 (380)
.+.+.+.++++++++.++.+++.+.+++|+++.+++++++ ||++++.+++|++++++|+++..+.++
T Consensus 224 ~t~~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~~~~~l~l-gE~~~~~~~iG~~lI~~gv~l~~~~~~ 290 (299)
T PRK11453 224 ATIVGYGIWGTLLGRYETWRVAPLSLLVPVVGLASAALLL-DERLTGLQFLGAVLIMAGLYINVFGLR 290 (299)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHh-CCCccHHHHHHHHHHHHHHHHHhcchh
Confidence 4445566688899999999999999999999999999999 777999999999999999998766543
No 9
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=99.96 E-value=7.3e-27 Score=216.90 Aligned_cols=275 Identities=9% Similarity=0.103 Sum_probs=194.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCcHHHHHHHHHHHHHHHHHHHHHHhhccCCCc---ccHHhhhHHhhh
Q 016904 9 LVLTYLYLLIYILLSSGVILYNKWVLSPKYFNFPFPITLTMIHMGFSGVVAFFLVRVFKVVSPVK---MTFEIYATCVVP 85 (380)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~k~~l~~~~~~~~~p~~~~~~r~~~~~~~l~~~~~~~~~~~~~~---~~~~~~~~~~~~ 85 (380)
.+..++..++|... ....|.. . +++ |..+.++|++++.+++.++....++.+..+ .++++ +...+.
T Consensus 10 ~~~~l~a~~~wg~~----~~~~k~~-~----~~~-~~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 78 (296)
T PRK15430 10 VLLALAAYFIWGIA----PAYFKLI-Y----YVP-ADEILTHRVIWSFFFMVVLMSICRQWSYLKTLIQTPQK-IFMLAV 78 (296)
T ss_pred HHHHHHHHHHHHHH----HHHHHHh-c----CCC-HHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHcCHHH-HHHHHH
Confidence 34444445555444 3455874 5 588 999999999999887766554322211101 12333 233345
Q ss_pred HHHHHHHHHHHHhhhhhcccHhHHHHHHHHHHHHHHHHHHHhccccccHhHHHHHHHHHhhhheeeeccceehHHHHHHH
Q 016904 86 ISAFFASSLWFGNTAYLHISVAFIQMLKALMPVATFFMAVLCGTDKARLDVFLNMVLVSVGVVISSYGEIHFNIVGTLYQ 165 (380)
Q Consensus 86 ~~~~~~~~~~~~~~al~~~~~~~~~il~~~~pi~v~ll~~~~l~ek~~~~~~~~v~l~~~Gv~l~~~~~~~~~~~G~~l~ 165 (380)
.++..+....++++|++++|++.++++.++.|+++++++++++|||+++++|++++++++|++++..++.+. ..++
T Consensus 79 ~~~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~~~~g~~l~~~Gv~li~~~~~~~----~~~~ 154 (296)
T PRK15430 79 SAVLIGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRMQWLAVILAICGVLVQLWTFGSL----PIIA 154 (296)
T ss_pred HHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHcCCc----cHHH
Confidence 566777889999999999999999999999999999999999999999999999999999999876543222 2568
Q ss_pred HHHHHHHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHHHHHhhcCCccccccchh-hHHHHHHHHHHHHHHHHH
Q 016904 166 VTGIVAEALRLVLTQVLLQKKGLTLNPITSLYYIAPCSFVFLFVPWYLLEKPMMEVSQIQF-NFWIFFSNALCALALNFS 244 (380)
Q Consensus 166 l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 244 (380)
++++++||+|.++.|+..+++ ..+......+...++.+...+.. +.+.......+. .+..++..++.+...+.+
T Consensus 155 l~aa~~~a~~~i~~r~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~g~~t~i~~~~ 229 (296)
T PRK15430 155 LGLAFSFAFYGLVRKKIAVEA--QTGMLIETMWLLPVAAIYLFAIA---DSSTSHMGQNPMSLNLLLIAAGIVTTVPLLC 229 (296)
T ss_pred HHHHHHHHHHHHHHHhcCCCC--chhHHHHHHHHHHHHHHHHHHHc---cCCcccccCCcHHHHHHHHHHHHHHHHHHHH
Confidence 889999999999998863321 12333334444444443322221 111111111111 122334445566677788
Q ss_pred HHHHHhhcchhHHHHhhhhhhHHHHHHHHHhcCCCCcchhhhHHHHHHHHHHHHHHHhhh
Q 016904 245 IFLVIGRTGAVTIRVAGVLKDWILIALSTVIFPESTITGLNIIGYAIALCGVVMYNYIKV 304 (380)
Q Consensus 245 ~~~~i~~~~a~~~s~~~~l~~v~~~~~~~l~~~~~~~~~~~~~G~~lii~g~~~~~~~~~ 304 (380)
++.++++.+|..++.+.+++|++++++|++++ ||++++.+++|+++|++|+.+......
T Consensus 230 ~~~a~~~~~a~~~s~~~~l~Pv~a~~~g~l~l-~E~~~~~~~~G~~lI~~~~~v~~~~~~ 288 (296)
T PRK15430 230 FTAAATRLRLSTLGFFQYIGPTLMFLLAVTFY-GEKPGADKMVTFAFIWVALAIFVMDAI 288 (296)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHH-cCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999 778999999999999999888765443
No 10
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=99.96 E-value=3.9e-26 Score=211.75 Aligned_cols=260 Identities=8% Similarity=0.005 Sum_probs=192.6
Q ss_pred HHHHHHHHHHHHHHhcCCCcCCCcHHHHHHHHHHHHHHHHHHHHHHhhccCCCcccHHhhhHHhhhHHHHHHHHHHHHhh
Q 016904 20 ILLSSGVILYNKWVLSPKYFNFPFPITLTMIHMGFSGVVAFFLVRVFKVVSPVKMTFEIYATCVVPISAFFASSLWFGNT 99 (380)
Q Consensus 20 ~~~~~~~~~~~k~~l~~~~~~~~~p~~~~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (380)
.+++.......|+.++ +++ |..+.++|++++.+++.++.+. + +.+.++|+ ++..+..+++.+..+.+.++
T Consensus 21 ~~~~~~~~~~~K~~~~----~~~-~~~~~~~R~~~a~l~l~~~~~~-~---~~~~~~~~-~~~~~~~g~~~~~~~~~~~~ 90 (293)
T PRK10532 21 MASIQSGASLAKSLFP----LVG-APGVTALRLALGTLILIAIFKP-W---RLRFAKEQ-RLPLLFYGVSLGGMNYLFYL 90 (293)
T ss_pred HHHHHhhHHHHHHHHH----HcC-HHHHHHHHHHHHHHHHHHHHhH-H---hccCCHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 3333334447899999 888 9999999999999888766532 1 11234555 45556667777778888999
Q ss_pred hhhcccHhHHHHHHHHHHHHHHHHHHHhccccccHhHHHHHHHHHhhhheeeecc---ceehHHHHHHHHHHHHHHHHHH
Q 016904 100 AYLHISVAFIQMLKALMPVATFFMAVLCGTDKARLDVFLNMVLVSVGVVISSYGE---IHFNIVGTLYQVTGIVAEALRL 176 (380)
Q Consensus 100 al~~~~~~~~~il~~~~pi~v~ll~~~~l~ek~~~~~~~~v~l~~~Gv~l~~~~~---~~~~~~G~~l~l~s~~~~a~~~ 176 (380)
+++|+|++.++++.++.|+++++++ +|++++ +.++.++++|+.++...+ .+.+..|++++++++++||.|.
T Consensus 91 al~~~~~~~a~~l~~t~Pi~~~ll~----~~~~~~--~~~~~i~~~Gv~li~~~~~~~~~~~~~G~ll~l~aa~~~a~~~ 164 (293)
T PRK10532 91 SIQTVPLGIAVALEFTGPLAVALFS----SRRPVD--FVWVVLAVLGLWFLLPLGQDVSHVDLTGAALALGAGACWAIYI 164 (293)
T ss_pred HHhcccHHHHHHHHHHHHHHHHHHh----cCChHH--HHHHHHHHHHHheeeecCCCcccCChHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999887 355554 445677889998876432 2345679999999999999999
Q ss_pred HHHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHHHHHhhcCCccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhcchhH
Q 016904 177 VLTQVLLQKKGLTLNPITSLYYIAPCSFVFLFVPWYLLEKPMMEVSQIQFNFWIFFSNALCALALNFSIFLVIGRTGAVT 256 (380)
Q Consensus 177 v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~a~~ 256 (380)
++.|+..++ .++... .+...++++.+.|.....+. .. ...+....+.+..+.+.+.+.+.++++++++.+|.+
T Consensus 165 v~~r~~~~~----~~~~~~-~~~~~~~~~~l~~~~~~~~~-~~-~~~~~~~~~~l~lgv~~t~~~~~l~~~~~~~~~a~~ 237 (293)
T PRK10532 165 LSGQRAGAE----HGPATV-AIGSLIAALIFVPIGALQAG-EA-LWHWSILPLGLAVAILSTALPYSLEMIALTRLPTRT 237 (293)
T ss_pred HHHHHHhcc----CCchHH-HHHHHHHHHHHHHHHHHccC-cc-cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhH
Confidence 999998554 355554 45556666666666554332 11 111111112334444445556667889999999999
Q ss_pred HHHhhhhhhHHHHHHHHHhcCCCCcchhhhHHHHHHHHHHHHHHHhh
Q 016904 257 IRVAGVLKDWILIALSTVIFPESTITGLNIIGYAIALCGVVMYNYIK 303 (380)
Q Consensus 257 ~s~~~~l~~v~~~~~~~l~~~~~~~~~~~~~G~~lii~g~~~~~~~~ 303 (380)
++++.+++|+++.++|++++ ||++++.+++|+++|++|...+.+..
T Consensus 238 as~~~~l~Pv~a~l~~~l~l-gE~~~~~~~iG~~lIl~~~~~~~~~~ 283 (293)
T PRK10532 238 FGTLMSMEPALAAVSGMIFL-GETLTLIQWLALGAIIAASMGSTLTI 283 (293)
T ss_pred HHHHHHhHHHHHHHHHHHHh-CCCCcHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999 77799999999999999999987554
No 11
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=99.96 E-value=1.1e-26 Score=214.61 Aligned_cols=291 Identities=15% Similarity=0.179 Sum_probs=220.0
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCcHHHHHHHHHHHHHHHHHHHHHHhhccC-CCcccHHhhhHHhh
Q 016904 6 NKPLVLTYLYLLIYILLSSGVILYNKWVLSPKYFNFPFPITLTMIHMGFSGVVAFFLVRVFKVVS-PVKMTFEIYATCVV 84 (380)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~k~~l~~~~~~~~~p~~~~~~r~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~ 84 (380)
+|+.+...+..-+-.++..+....+..+-+ . +++.|.+.+++-++.-.++.......++..+ ..+..+++ +++.+
T Consensus 8 ~~~~~~~~~lgQ~lsl~~~~t~~~s~~l~~--~-~~~~P~~Qs~~~Y~~l~~vy~~~~~~r~~~~~~~~~~~~~-~w~y~ 83 (334)
T PF06027_consen 8 TRRFWIVLLLGQVLSLCITGTGTFSSLLAN--K-GVNIPTFQSFFNYVLLALVYTPILLYRRGFKKWLKVLKRP-WWKYF 83 (334)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHh--c-CccCcHHHHHHHHHHHHHHHhhhhhhccccccchhhcchh-HHHHH
Confidence 344444333333333333444445566655 2 6777899888888765554444333222211 12223344 34455
Q ss_pred hHHHHHHHHHHHHhhhhhcccHhHHHHHHHHHHHHHHHHHHHhccccccHhHHHHHHHHHhhhheeeeccc---------
Q 016904 85 PISAFFASSLWFGNTAYLHISVAFIQMLKALMPVATFFMAVLCGTDKARLDVFLNMVLVSVGVVISSYGEI--------- 155 (380)
Q Consensus 85 ~~~~~~~~~~~~~~~al~~~~~~~~~il~~~~pi~v~ll~~~~l~ek~~~~~~~~v~l~~~Gv~l~~~~~~--------- 155 (380)
..+++...++++.+.|++|++.+.++++.+++.+++++++++++|+|+++.+++|++++++|++++...|.
T Consensus 84 lla~~Dv~aN~~~v~a~~yTsvtS~~lL~~~~i~~~~~LS~~fL~~ry~~~~~~gv~i~i~Gv~lv~~sD~~~~~~~~~~ 163 (334)
T PF06027_consen 84 LLALLDVEANYLVVLAYQYTSVTSVQLLDCTSIPFVMILSFIFLKRRYSWFHILGVLICIAGVVLVVVSDVLSGSDSSSG 163 (334)
T ss_pred HHHHHHHHHHHHHHHHhhcccHhHHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhheeeecccccccCCCC
Confidence 66899999999999999999999999999999999999999999999999999999999999998887652
Q ss_pred eehHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHHHHHhhcCCccccccchhhHHHH-HHH
Q 016904 156 HFNIVGTLYQVTGIVAEALRLVLTQVLLQKKGLTLNPITSLYYIAPCSFVFLFVPWYLLEKPMMEVSQIQFNFWIF-FSN 234 (380)
Q Consensus 156 ~~~~~G~~l~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 234 (380)
+....|++++++|+++||+++|++|+..++ .+..+.+.+.++++.++..+.....|........|....+.. +..
T Consensus 164 ~~~i~GDll~l~~a~lya~~nV~~E~~v~~----~~~~~~lg~~Glfg~ii~~iq~~ile~~~i~~~~w~~~~~~~~v~~ 239 (334)
T PF06027_consen 164 SNPILGDLLALLGAILYAVSNVLEEKLVKK----APRVEFLGMLGLFGFIISGIQLAILERSGIESIHWTSQVIGLLVGY 239 (334)
T ss_pred CccchhHHHHHHHHHHHHHHHHHHHHhccc----CCHHHHHHHHHHHHHHHHHHHHHheehhhhhccCCChhhHHHHHHH
Confidence 234799999999999999999999999886 478899999999999998888777776665544444443333 333
Q ss_pred HHHHHHHHHHHHHHHhhcchhHHHHhhhhhhHHHHHHHHHhcCCCCcchhhhHHHHHHHHHHHHHHHhhhh
Q 016904 235 ALCALALNFSIFLVIGRTGAVTIRVAGVLKDWILIALSTVIFPESTITGLNIIGYAIALCGVVMYNYIKVK 305 (380)
Q Consensus 235 ~~~~~~~~~~~~~~i~~~~a~~~s~~~~l~~v~~~~~~~l~~~~~~~~~~~~~G~~lii~g~~~~~~~~~~ 305 (380)
+++-+..+...-..++..+|+...+-.....+.++++++++| ++++++..++|.++|++|.++|+..+.+
T Consensus 240 ~~~lf~~y~l~p~~l~~ssAt~~nLsLLTsd~~ali~~i~~f-~~~~~~ly~~af~lIiiG~vvy~~~~~~ 309 (334)
T PF06027_consen 240 ALCLFLFYSLVPIVLRMSSATFFNLSLLTSDFYALIIDIFFF-GYKFSWLYILAFALIIIGFVVYNLAESP 309 (334)
T ss_pred HHHHHHHHHHHHHHHHhCccceeehHHHHhhHHHHHHHHHhc-CccccHHHHHHHHHHHHHhheEEccCCc
Confidence 444455555566689999999999988889999999999999 6679999999999999999999876543
No 12
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=99.96 E-value=4.5e-26 Score=212.25 Aligned_cols=272 Identities=22% Similarity=0.400 Sum_probs=219.6
Q ss_pred HHHHHHHhcCCCcCCCcHHHHHHHHHHHHHHHHHHHHHHhhccCCCcccHHhhhHHhhhHHHHHHHHHHHHhhhhhcccH
Q 016904 27 ILYNKWVLSPKYFNFPFPITLTMIHMGFSGVVAFFLVRVFKVVSPVKMTFEIYATCVVPISAFFASSLWFGNTAYLHISV 106 (380)
Q Consensus 27 ~~~~k~~l~~~~~~~~~p~~~~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~ 106 (380)
.+..+.+..++ ++.++|.++++.|++...++..+.....+..++++.++ +..++.++++.++..+.|.|++|+|.
T Consensus 16 g~~qE~i~~~~-~~~~~~~~lt~~q~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~al~~i~~ 90 (303)
T PF08449_consen 16 GILQEKIMTTP-YGSPFPLFLTFVQFAFNALFSFILLSLFKFPKSRKIPL----KKYAILSFLFFLASVLSNAALKYISY 90 (303)
T ss_pred HHHHHHHHcCC-CCCcccHHHHHHHHHHHHHHHHHHHHhccccCCCcChH----HHHHHHHHHHHHHHHHHHHHHHhCCh
Confidence 34555555533 22257999999999998887777665444233444444 44577889999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHhccccccHhHHHHHHHHHhhhheeeeccce----e------hHHHHHHHHHHHHHHHHHH
Q 016904 107 AFIQMLKALMPVATFFMAVLCGTDKARLDVFLNMVLVSVGVVISSYGEIH----F------NIVGTLYQVTGIVAEALRL 176 (380)
Q Consensus 107 ~~~~il~~~~pi~v~ll~~~~l~ek~~~~~~~~v~l~~~Gv~l~~~~~~~----~------~~~G~~l~l~s~~~~a~~~ 176 (380)
++.++++++.|+++++++.+++|||+++++++++++..+|+++....+.. . ...|+++.+++.++.|+..
T Consensus 91 p~~~~~ks~~~i~vmi~~~l~~~k~y~~~~~~~v~li~~Gv~~~~~~~~~~~~~~~~~~~~~~~G~~ll~~sl~~~a~~~ 170 (303)
T PF08449_consen 91 PTQIVFKSSKPIPVMILGVLILGKRYSRRQYLSVLLITIGVAIFTLSDSSSSSSSNSSSFSSALGIILLLLSLLLDAFTG 170 (303)
T ss_pred HHHHHHhhhHHHHHHHHHHHhcCccccHHHHHHHHHHHhhHheeeecccccccccccccccchhHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998875421 1 1249999999999999999
Q ss_pred HHHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHHHHHhh--cCCccc---cccchhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 016904 177 VLTQVLLQKKGLTLNPITSLYYIAPCSFVFLFVPWYLL--EKPMME---VSQIQFNFWIFFSNALCALALNFSIFLVIGR 251 (380)
Q Consensus 177 v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~--~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 251 (380)
++++|..++++ .++.++++|.+.++.+..++..... +..... ....+..++.++..+++++..+...+..+++
T Consensus 171 ~~qe~~~~~~~--~~~~~~mfy~n~~~~~~~~~~~~~l~~~~~~~~~~f~~~~p~~~~~l~~~s~~~~~g~~~i~~~~~~ 248 (303)
T PF08449_consen 171 VYQEKLFKKYG--KSPWELMFYTNLFSLPFLLILLFLLPTGEFRSAIRFISAHPSVLLYLLLFSLTGALGQFFIFYLIKK 248 (303)
T ss_pred HHHHHHHHHhC--CcHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999988753 6789999999999998887776652 111111 1122233455666778888888888889999
Q ss_pred cchhHHHHhhhhhhHHHHHHHHHhcCCCCcchhhhHHHHHHHHHHHHHHHhhhhh
Q 016904 252 TGAVTIRVAGVLKDWILIALSTVIFPESTITGLNIIGYAIALCGVVMYNYIKVKD 306 (380)
Q Consensus 252 ~~a~~~s~~~~l~~v~~~~~~~l~~~~~~~~~~~~~G~~lii~g~~~~~~~~~~~ 306 (380)
.+|.+.++.+.+++++++++++++| ++++++.||+|.++++.|..++.+.++|+
T Consensus 249 ~~al~~t~v~t~Rk~~sillS~~~f-~~~~~~~~~~G~~lv~~g~~~~~~~~~k~ 302 (303)
T PF08449_consen 249 FSALTTTIVTTLRKFLSILLSVIIF-GHPLSPLQWIGIVLVFAGIFLYSYAKKKK 302 (303)
T ss_pred cCchhhhhHHHHHHHHHHHHHHHhc-CCcCChHHHHHHHHhHHHHHHHHHhhccC
Confidence 9999999999999999999999999 56799999999999999999999876543
No 13
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=99.95 E-value=9.7e-26 Score=205.78 Aligned_cols=254 Identities=15% Similarity=0.080 Sum_probs=197.6
Q ss_pred HHHHHHHhcCCCcCCCcHHHHHHHHHHHHHHHHHHHHHHhhccCCCcccHHhhhHHhhhHHHHHHHHHHHHhhhhhcccH
Q 016904 27 ILYNKWVLSPKYFNFPFPITLTMIHMGFSGVVAFFLVRVFKVVSPVKMTFEIYATCVVPISAFFASSLWFGNTAYLHISV 106 (380)
Q Consensus 27 ~~~~k~~l~~~~~~~~~p~~~~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~ 106 (380)
....|+.++ +...|..+.+.|++++.+++.++.+. + .+.+++.+.....+++..+...+++.|++|+|+
T Consensus 5 ~~~~k~~~~----~~~~~~~~~~~r~~~~~l~l~~~~~~-~------~~~~~~~~~~~~~~~~~~l~~~~~~~a~~~~~~ 73 (260)
T TIGR00950 5 GVVIGQYLE----GQVPLYFAVFRRLIFALLLLLPLLRR-R------PPLKRLLRLLLLGALQIGVFYVLYFVAVKRLPV 73 (260)
T ss_pred HHHHHHHHh----cCCCHHHHHHHHHHHHHHHHHHHHHh-c------cCHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCh
Confidence 346788887 43338999999999887777665442 1 233443455555556778888999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHhccccccHhHHHHHHHHHhhhheeeecc-ceehHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 016904 107 AFIQMLKALMPVATFFMAVLCGTDKARLDVFLNMVLVSVGVVISSYGE-IHFNIVGTLYQVTGIVAEALRLVLTQVLLQK 185 (380)
Q Consensus 107 ~~~~il~~~~pi~v~ll~~~~l~ek~~~~~~~~v~l~~~Gv~l~~~~~-~~~~~~G~~l~l~s~~~~a~~~v~~~~~~~~ 185 (380)
+.++++.++.|+++++++.+++|||++++++.++.++++|+.++..++ .+.+..|++++++++++|+.+.++.|+..++
T Consensus 74 ~~~~ii~~~~P~~~~~~~~l~~~e~~~~~~~~gi~i~~~Gv~li~~~~~~~~~~~G~~~~l~a~~~~a~~~~~~k~~~~~ 153 (260)
T TIGR00950 74 GEAALLLYLAPLYVTLLSDLMGKERPRKLVLLAAVLGLAGAVLLLSDGNLSINPAGLLLGLGSGISFALGTVLYKRLVKK 153 (260)
T ss_pred hhhHHHHhhhHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHhhccCCcccccHHHHHHHHHHHHHHHHHHHHHhHHhhc
Confidence 999999999999999999999999999999999999999998876543 3456789999999999999999999998654
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHhhcCCccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHhhhhhh
Q 016904 186 KGLTLNPITSLYYIAPCSFVFLFVPWYLLEKPMMEVSQIQFNFWIFFSNALCALALNFSIFLVIGRTGAVTIRVAGVLKD 265 (380)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~a~~~s~~~~l~~ 265 (380)
. +.++.....+...++.+++.+.....+.... . ......+++..+.+.....+.++++++++.++.+++.+.+++|
T Consensus 154 ~--~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~s~~~~~~p 229 (260)
T TIGR00950 154 E--GPELLQFTGWVLLLGALLLLPFAWFLGPNPQ-A-LSLQWGALLYLGLIGTALAYFLWNKGLTLVDPSAASILALAEP 229 (260)
T ss_pred C--CchHHHHHHHHHHHHHHHHHHHHHhcCCCCC-c-chHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHH
Confidence 2 1224445556677787777777665433221 1 1212223344444445566777889999999999999999999
Q ss_pred HHHHHHHHHhcCCCCcchhhhHHHHHHHHHH
Q 016904 266 WILIALSTVIFPESTITGLNIIGYAIALCGV 296 (380)
Q Consensus 266 v~~~~~~~l~~~~~~~~~~~~~G~~lii~g~ 296 (380)
+++++++++++ +|++++.+++|.++++.|+
T Consensus 230 v~~~ll~~~~~-~E~~~~~~~~G~~li~~g~ 259 (260)
T TIGR00950 230 LVALLLGLLIL-GETLSLPQLIGGALIIAAV 259 (260)
T ss_pred HHHHHHHHHHh-CCCCCHHHHHHHHHHHHhc
Confidence 99999999999 7789999999999999986
No 14
>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=7.3e-26 Score=201.74 Aligned_cols=296 Identities=21% Similarity=0.328 Sum_probs=249.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCcHHHHHHHHHHHHHHHHHHHHHHhhccCCCcccHHhhhHHhhhH
Q 016904 7 KPLVLTYLYLLIYILLSSGVILYNKWVLSPKYFNFPFPITLTMIHMGFSGVVAFFLVRVFKVVSPVKMTFEIYATCVVPI 86 (380)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~k~~l~~~~~~~~~p~~~~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (380)
++........+.|+++++.+++.||++++ .++||.-+++..+|.+...+.+...- ..|..+.++++++. .|+++|.
T Consensus 8 ~~~~~~l~sa~~Y~~sS~lm~vvNK~vls--~y~f~~~l~l~~~Q~l~s~~~v~~lk-~~~lv~~~~l~~~~-~kk~~P~ 83 (314)
T KOG1444|consen 8 KKQSSPLLSALFYCLSSILMTVVNKIVLS--SYNFPMGLLLMLLQSLASVLVVLVLK-RLGLVNFRPLDLRT-AKKWFPV 83 (314)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHh--cCCCcHHHHHHHHHHHHHHHHHHHHH-HhceeecCCcChHH-HHHHccH
Confidence 34455677899999999999999999999 44444344445599997766665543 35656677788888 7999999
Q ss_pred HHHHHHHHHHHhhhhhcccHhHHHHHHHHHHHHHHHHHHHhccccccHhHHHHHHHHHhhhheeeeccceehHHHHHHHH
Q 016904 87 SAFFASSLWFGNTAYLHISVAFIQMLKALMPVATFFMAVLCGTDKARLDVFLNMVLVSVGVVISSYGEIHFNIVGTLYQV 166 (380)
Q Consensus 87 ~~~~~~~~~~~~~al~~~~~~~~~il~~~~pi~v~ll~~~~l~ek~~~~~~~~v~l~~~Gv~l~~~~~~~~~~~G~~l~l 166 (380)
.+.+.++.+....+++|+++++.+++++.+|+++++.+..++|.+++...|.++....+|......+|..++..|..|++
T Consensus 84 ~~lf~~~i~t~~~slk~lnVpm~tv~kn~tii~~ai~E~lf~~~~~~~~v~~Sv~~m~~~s~~~~~~d~sf~~~gY~w~~ 163 (314)
T KOG1444|consen 84 SLLFVGMLFTGSKSLKYLNVPMFTVFKNLTIILTAIGEVLFFGKRPSNKVWASVFAMIIGSVAAAFTDLSFNLRGYSWAL 163 (314)
T ss_pred HHHHHHHHHHccccccccCchHHHHHhhchHHHHHHhHHhhcCcCchhhHHHHHHHHHHHHHhhccccceecchhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHHHHHhhcCCc-cc--cccch--hhHHHHHHHHHHHHHH
Q 016904 167 TGIVAEALRLVLTQVLLQKKGLTLNPITSLYYIAPCSFVFLFVPWYLLEKPM-ME--VSQIQ--FNFWIFFSNALCALAL 241 (380)
Q Consensus 167 ~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~-~~--~~~~~--~~~~~~~~~~~~~~~~ 241 (380)
..+++.+.+.++.|+-.+.. +.+.+.+++|.++...+.+.....+.++.. .. ...|. ..+..+.++++++++.
T Consensus 164 ~n~~~~a~~~v~~kk~vd~~--~l~~~~lv~yNnl~~L~~l~~~~~~~ge~~~l~~~~~~~~~~~~~~~~~lScv~gf~i 241 (314)
T KOG1444|consen 164 ANCLTTAAFVVYVKKSVDSA--NLNKFGLVFYNNLLSLPPLLILSFITGELDALSLNFDNWSDSSVLVVMLLSCVMGFGI 241 (314)
T ss_pred HHHHHHHHHHHHHHHhhccc--cccceeEEeehhHHHHHHHHHHHHHhcchHHHHhhcccccchhHHHHHHHHHHHHHHH
Confidence 99999999999999987754 367889999999999888877776665533 11 11121 2234567899999999
Q ss_pred HHHHHHHHhhcchhHHHHhhhhhhHHHHHHHHHhcCCCCcchhhhHHHHHHHHHHHHHHHhhhhhhhh
Q 016904 242 NFSIFLVIGRTGAVTIRVAGVLKDWILIALSTVIFPESTITGLNIIGYAIALCGVVMYNYIKVKDVRA 309 (380)
Q Consensus 242 ~~~~~~~i~~~~a~~~s~~~~l~~v~~~~~~~l~~~~~~~~~~~~~G~~lii~g~~~~~~~~~~~~~~ 309 (380)
+++.+++.+..++++.++++ .+-.+.+.++.+++||+++++..++|..+-+.|..+|++.+.++++.
T Consensus 242 sy~s~~ct~~~SAtT~tivG-~~n~l~t~l~~ll~~d~~~~~~n~~gll~~~~ggv~Y~~~~~~~k~~ 308 (314)
T KOG1444|consen 242 SYTSFLCTRVNSATTTTIVG-AKNKLLTYLGGLLFGDKPFTFLNVIGLLVGFFGGVLYSYATFRKKKQ 308 (314)
T ss_pred HHHHHHHHhhccccceeehh-hhhhHHHHHHHHhcCCceechhhhHHHHHHhhhhhHHhhhhhhhccC
Confidence 99999999999999999999 77777788888888899999999999999999999999987665443
No 15
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=99.92 E-value=3.6e-23 Score=190.86 Aligned_cols=269 Identities=10% Similarity=-0.001 Sum_probs=185.5
Q ss_pred HHHHHHHHHHHHHhcCCCcCCCcHHHHHHHHHHHHHHHHHHHHHHhhccCCCcccHHhhhHHhhhHHHHHHHHHHHHhhh
Q 016904 21 LLSSGVILYNKWVLSPKYFNFPFPITLTMIHMGFSGVVAFFLVRVFKVVSPVKMTFEIYATCVVPISAFFASSLWFGNTA 100 (380)
Q Consensus 21 ~~~~~~~~~~k~~l~~~~~~~~~p~~~~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 100 (380)
++........|...+ +-+ + ..++++..+.+++.++.......+..+...++++...+..++.......+.+.|
T Consensus 11 ~~~a~~~~~~k~~~~----~~~-~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 83 (281)
T TIGR03340 11 LMHAGWNLMAKSHAD----KEP-D--FLWWALLAHSVLLTPYGLWYLAQVGWSRLPATFWLLLAISAVANMVYFLGLAQA 83 (281)
T ss_pred HHHHHHHHHHhhcCC----chh-H--HHHHHHHHHHHHHHHHHHHhcccCCCCCcchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 333444556676666 322 4 346777766666666554321122222223343455566666777888999999
Q ss_pred hhcccHhHHHHHHHHHHHHHHHHHHHhccccccHhHHHHHHHHHhhhheeeeccc-eehHHHHHHHHHHHHHHHHHHHHH
Q 016904 101 YLHISVAFIQMLKALMPVATFFMAVLCGTDKARLDVFLNMVLVSVGVVISSYGEI-HFNIVGTLYQVTGIVAEALRLVLT 179 (380)
Q Consensus 101 l~~~~~~~~~il~~~~pi~v~ll~~~~l~ek~~~~~~~~v~l~~~Gv~l~~~~~~-~~~~~G~~l~l~s~~~~a~~~v~~ 179 (380)
+++.|++.++.+.++.|+++.+++++++|||+++++|+|+.++++|+.++..++. ..+..|+.++++++++|+.|.++.
T Consensus 84 ~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~~~~g~~~~~~Gv~ll~~~~~~~~~~~g~~~~l~aal~~a~~~i~~ 163 (281)
T TIGR03340 84 YHHADVGLVYPLARSSPLLVAIWATLTLGETLSPLAWLGILIITLGLLVLGLSRFAQHRRKAYAWALAAALGTAIYSLSD 163 (281)
T ss_pred HhcCChhhhhhHHhhhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhhhhc
Confidence 9999999999999999999999999999999999999999999999988765432 345678889999999999999988
Q ss_pred HHHhhhCCCCCCHHHHHHHHHHHHHHHHHHHHHhhcCCccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHH
Q 016904 180 QVLLQKKGLTLNPITSLYYIAPCSFVFLFVPWYLLEKPMMEVSQIQFNFWIFFSNALCALALNFSIFLVIGRTGAVTIRV 259 (380)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~a~~~s~ 259 (380)
|+..++.+...+......+......+.+.+.....+..... ......+..+..+++.+...+.++++++++.++..++.
T Consensus 164 k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~s~l~~~l~~~al~~~~a~~~~~ 242 (281)
T TIGR03340 164 KAAALGVPAFYSALGYLGIGFLAMGWPFLLLYLKRHGRSMF-PYARQILPSATLGGLMIGGAYALVLWAMTRLPVATVVA 242 (281)
T ss_pred cccccchhcccccHHHHHHHHHHHHHHHHHHHHHHhccchh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCceEEEe
Confidence 87633221111222222222222211122221111211111 11112233445566667777778999999999999999
Q ss_pred hhhhhhHHHHHHHHHhcCCCCcchhhhHHHHHHHHHHHH
Q 016904 260 AGVLKDWILIALSTVIFPESTITGLNIIGYAIALCGVVM 298 (380)
Q Consensus 260 ~~~l~~v~~~~~~~l~~~~~~~~~~~~~G~~lii~g~~~ 298 (380)
+.+++|++++++|++++ +|+++..+++|++++++|+.+
T Consensus 243 ~~~l~pv~a~l~g~~~l-gE~~~~~~~iG~~lil~Gv~l 280 (281)
T TIGR03340 243 LRNTSIVFAVVLGIWFL-NERWYLTRLMGVCIIVAGLVV 280 (281)
T ss_pred ecccHHHHHHHHHHHHh-CCCccHHHHHHHHHHHHhHHh
Confidence 99999999999999999 778999999999999999875
No 16
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=99.92 E-value=1.8e-22 Score=183.74 Aligned_cols=247 Identities=8% Similarity=0.053 Sum_probs=167.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCcHHHHHHHHHHHHHHHHHHHHHHhhccCC-----CcccHHhhhHHh
Q 016904 9 LVLTYLYLLIYILLSSGVILYNKWVLSPKYFNFPFPITLTMIHMGFSGVVAFFLVRVFKVVSP-----VKMTFEIYATCV 83 (380)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~k~~l~~~~~~~~~p~~~~~~r~~~~~~~l~~~~~~~~~~~~-----~~~~~~~~~~~~ 83 (380)
.+...+..++|... ....|. +. +++ |..+.++|++++.+++.++....++++. ++.++++++...
T Consensus 4 ~~~~i~a~~~wg~~----~~~~k~-~~----~~~-~~~i~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (256)
T TIGR00688 4 IIVSLLASFLFGYM----YYYSKL-LK----PLP-ATDILGHRMIWSFPFMLLSVTLFRQWAALIERLKRIQKRPLILSL 73 (256)
T ss_pred HHHHHHHHHHHHHH----HHHHHH-hc----cCC-HHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHhCcccchHHHHH
Confidence 34444455556554 446787 56 588 9999999999998887665543332111 111222223345
Q ss_pred hhHHHHHHHHHHHHhhhhhcccHhHHHHHHHHHHHHHHHHHHHhccccccHhHHHHHHHHHhhhheeeeccceehHHHHH
Q 016904 84 VPISAFFASSLWFGNTAYLHISVAFIQMLKALMPVATFFMAVLCGTDKARLDVFLNMVLVSVGVVISSYGEIHFNIVGTL 163 (380)
Q Consensus 84 ~~~~~~~~~~~~~~~~al~~~~~~~~~il~~~~pi~v~ll~~~~l~ek~~~~~~~~v~l~~~Gv~l~~~~~~~~~~~G~~ 163 (380)
...+++.+....++++|+++++++.++++.++.|+++++++++++|||+++++|++++++++|++++..++.+.+ .
T Consensus 74 ~~~g~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~~~l~~~~~~~Gv~li~~~~~~~~----~ 149 (256)
T TIGR00688 74 LLCGLLIGFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRFQFIAVIIATLGVISNIVLKGSLP----W 149 (256)
T ss_pred HHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHcCCch----H
Confidence 566777788899999999999999999999999999999999999999999999999999999998755432222 4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHHHHHhhcCCccccccchhhHHHHHHHHHHHHHHHH
Q 016904 164 YQVTGIVAEALRLVLTQVLLQKKGLTLNPITSLYYIAPCSFVFLFVPWYLLEKPMMEVSQIQFNFWIFFSNALCALALNF 243 (380)
Q Consensus 164 l~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (380)
++++++++||.|.+..|+..++ +....... .........+.....+.+..........+..++..++++...+.
T Consensus 150 ~~l~aa~~~a~~~i~~~~~~~~-----~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~t~i~~~ 223 (256)
T TIGR00688 150 EALVLAFSFTAYGLIRKALKNT-----DLAGFCLE-TLSLMPVAIYYLLQTDFATVQQTNPFPIWLLLVLAGLITGTPLL 223 (256)
T ss_pred HHHHHHHHHHHHHHHHhhcCCC-----CcchHHHH-HHHHHHHHHHHHHHhccCcccccCchhHHHHHHHHHHHHHHHHH
Confidence 5788999999999999986332 22222211 11111121111111121111111111122333344455777888
Q ss_pred HHHHHHhhcchhHHHHhhhhhhHHHHHHHHHh
Q 016904 244 SIFLVIGRTGAVTIRVAGVLKDWILIALSTVI 275 (380)
Q Consensus 244 ~~~~~i~~~~a~~~s~~~~l~~v~~~~~~~l~ 275 (380)
+++.++++.++.+++.+.+++|++++++++++
T Consensus 224 l~~~a~~~~~a~~~s~~~yl~Pv~~~~~~~~~ 255 (256)
T TIGR00688 224 AFVIAANRLPLNLLGLLQYIGPTIMMLCVSFL 255 (256)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHHHHHHHHHh
Confidence 89999999999999999999999999999764
No 17
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=99.89 E-value=4.4e-20 Score=170.76 Aligned_cols=272 Identities=15% Similarity=0.161 Sum_probs=191.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCcCCCcHHHHHHHHHHHHHHHHHHHHHHhhccCCCcccHHhhhHHhhhHHHHHHHHH
Q 016904 15 YLLIYILLSSGVILYNKWVLSPKYFNFPFPITLTMIHMGFSGVVAFFLVRVFKVVSPVKMTFEIYATCVVPISAFFASSL 94 (380)
Q Consensus 15 ~~~~~~~~~~~~~~~~k~~l~~~~~~~~~p~~~~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (380)
..+++...+.......|...+ +...+....+.|++++.++...... .++....+... ++++..+..++......
T Consensus 11 ~~l~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 84 (292)
T COG0697 11 ALLLWGLLWGLSFIALKLAVE----SLDPFLFAAALRFLIAALLLLPLLL-LEPRGLRPALR-PWLLLLLLALLGLALPF 84 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHhc----ccCChHHHHHHHHHHHHHHHHHHHH-hhccccccccc-chHHHHHHHHHHHHHHH
Confidence 344444444444445666666 3232666667799988777333332 11111111111 12355566666777888
Q ss_pred HHHhhhhhcccHhHHHHHHHHHHHHHHHHHH-HhccccccHhHHHHHHHHHhhhheeeeccceeh---HHHHHHHHHHHH
Q 016904 95 WFGNTAYLHISVAFIQMLKALMPVATFFMAV-LCGTDKARLDVFLNMVLVSVGVVISSYGEIHFN---IVGTLYQVTGIV 170 (380)
Q Consensus 95 ~~~~~al~~~~~~~~~il~~~~pi~v~ll~~-~~l~ek~~~~~~~~v~l~~~Gv~l~~~~~~~~~---~~G~~l~l~s~~ 170 (380)
.+++.++++++++.++++.++.|+++.+++. +++|||++++++.++++.++|+.++..++...+ ..|+.+++++++
T Consensus 85 ~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~lv~~~~~~~~~~~~~g~~~~l~a~~ 164 (292)
T COG0697 85 LLLFLALKYTSASVASLIIGLLPLFTALLAVLLLLGERLSLLQILGILLALAGVLLILLGGGGGGILSLLGLLLALAAAL 164 (292)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHheecCCCcchhHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999996 777999999999999999999999998765443 589999999999
Q ss_pred HHHHHHHHHHHHhhhCCCCCCHHHHHH-HHHHHHHHHHHHHHHhhcCCccccccchhhHHHHHHHHHHHH-HHHHHHHHH
Q 016904 171 AEALRLVLTQVLLQKKGLTLNPITSLY-YIAPCSFVFLFVPWYLLEKPMMEVSQIQFNFWIFFSNALCAL-ALNFSIFLV 248 (380)
Q Consensus 171 ~~a~~~v~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 248 (380)
++|++.++.|+.. + .++..... +..........+.. ..+.+ . ......+..+...+++.. ..+.+++.+
T Consensus 165 ~~a~~~~~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~-~~~~~~~~~~~~~g~~~~~i~~~~~~~~ 235 (292)
T COG0697 165 LWALYTALVKRLS-R----LGPVTLALLLQLLLALLLLLLFF-LSGFG--A-PILSRAWLLLLYLGVFSTGLAYLLWYYA 235 (292)
T ss_pred HHHHHHHHHHHhc-C----CChHHHHHHHHHHHHHHHHHHHH-hcccc--c-cCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999886 2 35555555 33331111111221 11211 1 111122333333344433 467778899
Q ss_pred HhhcchhHHHHhhhhhhHHHHHHHHHhcCCCCcchhhhHHHHHHHHHHHHHHHh
Q 016904 249 IGRTGAVTIRVAGVLKDWILIALSTVIFPESTITGLNIIGYAIALCGVVMYNYI 302 (380)
Q Consensus 249 i~~~~a~~~s~~~~l~~v~~~~~~~l~~~~~~~~~~~~~G~~lii~g~~~~~~~ 302 (380)
+++.++...+.+.+++|+.+++++++++ +|+++..+++|+++++.|+.+....
T Consensus 236 ~~~~~~~~~~~~~~~~~v~~~~~~~l~~-~e~~~~~~~~G~~li~~g~~l~~~~ 288 (292)
T COG0697 236 LRLLGASLVALLSLLEPVFAALLGVLLL-GEPLSPAQLLGAALVVLGVLLASLR 288 (292)
T ss_pred HHhcCchHHHHHHHHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999 7779999999999999999987654
No 18
>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=99.88 E-value=2.6e-21 Score=162.60 Aligned_cols=284 Identities=18% Similarity=0.262 Sum_probs=233.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCcCCCcHHHHHHHHHHHHHHHHHHHHHHhhccCCCcccHHhhhHHhhhHHHHHHHH
Q 016904 14 LYLLIYILLSSGVILYNKWVLSPKYFNFPFPITLTMIHMGFSGVVAFFLVRVFKVVSPVKMTFEIYATCVVPISAFFASS 93 (380)
Q Consensus 14 ~~~~~~~~~~~~~~~~~k~~l~~~~~~~~~p~~~~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (380)
...+.|.+.++.|++.||++++ ..+|+..+.+.+.|-+++.+.+..+-. .|..+. ..++ .+.+++.+++...+
T Consensus 9 ~~~lsYc~sSIlmTltNKyVls--~~gfnMnflll~vQSlvcvv~l~iLk~-l~~~~f---R~t~-aK~WfpiSfLLv~M 81 (309)
T COG5070 9 TASLSYCFSSILMTLTNKYVLS--NLGFNMNFLLLAVQSLVCVVGLLILKF-LRLVEF---RLTK-AKKWFPISFLLVVM 81 (309)
T ss_pred hHHHHHHHHHHHHHHhhHheec--CCCCchhhHHHHHHHHHHHHHHHHHHH-HhHhhe---ehhh-hhhhcCHHHHHHHH
Confidence 3577899999999999999999 555555688889999887766655432 332222 2333 46678999999999
Q ss_pred HHHHhhhhhcccHhHHHHHHHHHHHHHHHHHHHhccccccHhHHHHHHHHHhhhheeeeccceeh-------HHHHHHHH
Q 016904 94 LWFGNTAYLHISVAFIQMLKALMPVATFFMAVLCGTDKARLDVFLNMVLVSVGVVISSYGEIHFN-------IVGTLYQV 166 (380)
Q Consensus 94 ~~~~~~al~~~~~~~~~il~~~~pi~v~ll~~~~l~ek~~~~~~~~v~l~~~Gv~l~~~~~~~~~-------~~G~~l~l 166 (380)
.+....+++|++++.++++++++.+.++..+..|+|.|++..+..+.++.+..-+...++|.+.. -.|.+|+.
T Consensus 82 Iyt~SKsLqyL~vpiYTiFKNltII~iAygEvl~Fgg~vtsl~l~SFilMvlSS~va~w~D~q~~~~~~~~lN~GY~Wm~ 161 (309)
T COG5070 82 IYTSSKSLQYLAVPIYTIFKNLTIILIAYGEVLFFGGRVTSLELLSFILMVLSSVVATWGDQQASAFKAQILNPGYLWMF 161 (309)
T ss_pred HHhcccceeeeeeeHHHHhccceeehhHhhHHHHhcCccchhhHHHHHHHHHHHHHhccchhhHHHHHhcccCCceEEEe
Confidence 99999999999999999999999999999999999999999999999999999988888875321 25999999
Q ss_pred HHHHHHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHHHHHhhcCCccc--cccchh-hHHHHHHHHHHHHHHHH
Q 016904 167 TGIVAEALRLVLTQVLLQKKGLTLNPITSLYYIAPCSFVFLFVPWYLLEKPMME--VSQIQF-NFWIFFSNALCALALNF 243 (380)
Q Consensus 167 ~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~ 243 (380)
..++..+.+....|+-.+-. +....+.++|.++.+..+++...++.|++... ...... .+...+.+|+++++..+
T Consensus 162 ~NclssaafVL~mrkri~lt--Nf~d~dtmfYnNllslPiL~~~s~~~edws~~n~annl~~d~l~am~ISgl~svgiSy 239 (309)
T COG5070 162 TNCLSSAAFVLIMRKRIKLT--NFKDFDTMFYNNLLSLPILLSFSFLFEDWSPGNLANNLSVDSLMAMFISGLCSVGISY 239 (309)
T ss_pred hhhHhHHHHHHHHHHhhccc--ccchhhHHHHhhhHHHHHHHHHHHHhccCCcchhhcCCChHHHHHHHHHHHHHhhhhh
Confidence 99999999988888765532 24568899999999999998888888876554 222222 23345778999999999
Q ss_pred HHHHHHhhcchhHHHHhhhhhhHHHHHHHHHhcCCCCcchhhhHHHHHHHHHHHHHHHhhhhhh
Q 016904 244 SIFLVIGRTGAVTIRVAGVLKDWILIALSTVIFPESTITGLNIIGYAIALCGVVMYNYIKVKDV 307 (380)
Q Consensus 244 ~~~~~i~~~~a~~~s~~~~l~~v~~~~~~~l~~~~~~~~~~~~~G~~lii~g~~~~~~~~~~~~ 307 (380)
+.-|+++.++.++.++++.++.....+.|.++| |++.+...+..+.+-..+..+|.+.+.+++
T Consensus 240 ~saWcvrVtSSTtySMvGALNKlp~alaGlvff-dap~nf~si~sillGflsg~iYavaks~k~ 302 (309)
T COG5070 240 CSAWCVRVTSSTTYSMVGALNKLPIALAGLVFF-DAPVNFLSIFSILLGFLSGAIYAVAKSKKQ 302 (309)
T ss_pred ccceeEeehhhhHHHHHHHhhhChHHHhhhhhc-CCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999 888999999999998888888888766543
No 19
>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.88 E-value=2e-23 Score=180.45 Aligned_cols=292 Identities=19% Similarity=0.246 Sum_probs=242.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCcCCCcHHHHHHHHHHHHHHHHHHHHHHhhcc------CCCcccHHhhhHHhhhHH
Q 016904 14 LYLLIYILLSSGVILYNKWVLSPKYFNFPFPITLTMIHMGFSGVVAFFLVRVFKVV------SPVKMTFEIYATCVVPIS 87 (380)
Q Consensus 14 ~~~~~~~~~~~~~~~~~k~~l~~~~~~~~~p~~~~~~r~~~~~~~l~~~~~~~~~~------~~~~~~~~~~~~~~~~~~ 87 (380)
.....+..+++++.+.||.++.......+.|.+++++|.++...++..+.+..++. +..+++.+. .+.+++.+
T Consensus 31 ~~vs~ywv~SI~~vf~nk~llss~~~~Ld~plf~t~~qcLvt~~~c~~ls~ls~k~~~~ftfp~~~ldl~t-~r~vlpls 109 (347)
T KOG1442|consen 31 SAVSLYWVTSIGLVFLNKHLLSSLVVILDAPLFITWYQCLVTTSICLVLSSLSVKYPGLFTFPSLQLDLAT-ARQVLPLS 109 (347)
T ss_pred hhccceeeeeehhhhhHHHHhhchhhhcCcHHHHHHHHHHHHHHHHHHHHHHHhhccceeccCcccccHHH-HHhhcchh
Confidence 34556668899999999999996556778899999999999988877766543322 122345555 68889999
Q ss_pred HHHHHHHHHHhhhhhcccHhHHHHHHHHHHHHHHHHHHHhccccccHhHHHHHHHHHhhhheeeecc---ceehHHHHHH
Q 016904 88 AFFASSLWFGNTAYLHISVAFIQMLKALMPVATFFMAVLCGTDKARLDVFLNMVLVSVGVVISSYGE---IHFNIVGTLY 164 (380)
Q Consensus 88 ~~~~~~~~~~~~al~~~~~~~~~il~~~~pi~v~ll~~~~l~ek~~~~~~~~v~l~~~Gv~l~~~~~---~~~~~~G~~l 164 (380)
+.+.++..+.|++++|++++++.+-++++.+|+.+++++++|+|-+..-..+.++++.|..+-+..| ...++.|+++
T Consensus 110 vVfi~mI~fnnlcL~yVgVaFYyvgRsLttvFtVlLtyvllkqkTs~~~~~~C~lIi~GF~lGvdqE~~~~~ls~~Gvif 189 (347)
T KOG1442|consen 110 VVFILMISFNNLCLKYVGVAFYYVGRSLTTVFTVLLTYVLLKQKTSFFALGCCLLIILGFGLGVDQEGSTGTLSWIGVIF 189 (347)
T ss_pred heeeeehhccceehhhcceEEEEeccchhhhHHHHhHHhhcccccccccceeehhheehheeccccccccCccchhhhHH
Confidence 9999999999999999999999999999999999999999999999999999999999998887766 4567999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHHHHHhhcCCccc---cccchhhHH-HHHHHHHHHHH
Q 016904 165 QVTGIVAEALRLVLTQVLLQKKGLTLNPITSLYYIAPCSFVFLFVPWYLLEKPMME---VSQIQFNFW-IFFSNALCALA 240 (380)
Q Consensus 165 ~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~---~~~~~~~~~-~~~~~~~~~~~ 240 (380)
++.|+++-|+..++.||.+...+ ..-+.+.+|+++.++++.+|...+.+..... +..+...+| ++.++|++++.
T Consensus 190 GVlaSl~vAlnaiytkk~l~~v~--~~iw~lt~ynnv~a~lLflpll~lnge~~~v~~~~~l~a~~Fw~~mtLsglfgF~ 267 (347)
T KOG1442|consen 190 GVLASLAVALNAIYTKKVLPPVG--DCIWRLTAYNNVNALLLFLPLLILNGEFQAVVGFPHLPAIKFWILMTLSGLFGFA 267 (347)
T ss_pred HHHHHHHHHHHHHhhheeccccc--CeehhhHHHHHHHHHHHHHHHHHHcchHHHHcCcccchHHHHHHHHHHHHHHHHH
Confidence 99999999999999998654422 2457788899999988888876654322111 122333344 56789999999
Q ss_pred HHHHHHHHHhhcchhHHHHhhhhhhHHHHHHHHHhcCCCCcchhhhHHHHHHHHHHHHHHHhhhhhhhh
Q 016904 241 LNFSIFLVIGRTGAVTIRVAGVLKDWILIALSTVIFPESTITGLNIIGYAIALCGVVMYNYIKVKDVRA 309 (380)
Q Consensus 241 ~~~~~~~~i~~~~a~~~s~~~~l~~v~~~~~~~l~~~~~~~~~~~~~G~~lii~g~~~~~~~~~~~~~~ 309 (380)
+++...+-+|-++|.++.+.+..+....+++++.++ +|..+..-|-|-+++++|...|.+.|+.++++
T Consensus 268 mgyvTg~QIK~TSplThnISgTAka~aQTvlAv~~y-~E~ks~lwwtsn~~vLvgs~~YT~vk~~em~~ 335 (347)
T KOG1442|consen 268 MGYVTGWQIKVTSPLTHNISGTAKAAAQTVLAVAYY-SETKSGLWWTSNIVVLVGSLAYTLVKEHEMRK 335 (347)
T ss_pred hhheeeEEEEecccceeeecHhHHHHHHHHHHHHHH-HHHhhhheeeeeEEEEehhHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999 77799999999999999999999988877765
No 20
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=99.85 E-value=2.3e-20 Score=158.08 Aligned_cols=255 Identities=16% Similarity=0.233 Sum_probs=204.4
Q ss_pred cCCCcHHHHHHHHHHHHHHHHHHHHHHhhccCCCcccHHhhhHHhhhHHHHHHHHHHHHhhhhhcccHhHHHHHHHHHHH
Q 016904 39 FNFPFPITLTMIHMGFSGVVAFFLVRVFKVVSPVKMTFEIYATCVVPISAFFASSLWFGNTAYLHISVAFIQMLKALMPV 118 (380)
Q Consensus 39 ~~~~~p~~~~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~il~~~~pi 118 (380)
-.|.|.+.+.+.|.....++.-.+..+++ ..+.+... -+.....++.|.+.+...|.|++|+|.++..+-+++.||
T Consensus 48 E~FTfalaLVf~qC~~N~vfAkvl~~ir~---~~~~D~t~-~~~YaAcs~sYLlAMVssN~Alq~vpYPTqVlgKScKPI 123 (337)
T KOG1580|consen 48 EKFTFALALVFFQCTANTVFAKVLFLIRK---KTEIDNTP-TKMYAACSASYLLAMVSSNQALQYVPYPTQVLGKSCKPI 123 (337)
T ss_pred heehHHHHHHHHHHHHHHHHHHhheeecc---cccccCCc-chHHHHHHHHHHHHHHhccchhcccCCcHHHhcccCCCc
Confidence 35778899999999988877765554322 22333322 344566788889999999999999999999999999999
Q ss_pred HHHHHHHHhccccccHhHHHHHHHHHhhhheeeeccc-------eehHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCC
Q 016904 119 ATFFMAVLCGTDKARLDVFLNMVLVSVGVVISSYGEI-------HFNIVGTLYQVTGIVAEALRLVLTQVLLQKKGLTLN 191 (380)
Q Consensus 119 ~v~ll~~~~l~ek~~~~~~~~v~l~~~Gv~l~~~~~~-------~~~~~G~~l~l~s~~~~a~~~v~~~~~~~~~~~~~~ 191 (380)
-++++++++.|++++++++..++++++|+++..+.+. .....|-++.+.|.-..++....++|+-+.. .-+
T Consensus 124 PVMilGVl~~~KsY~w~kY~cVL~IV~GValFmYK~~Kv~g~e~~t~g~GElLL~lSL~mDGlTg~~Qdrira~y--q~~ 201 (337)
T KOG1580|consen 124 PVMILGVLFAHKSYHWRKYCCVLMIVVGVALFMYKENKVGGAEDKTFGFGELLLILSLAMDGLTGSIQDRIRASY--QRT 201 (337)
T ss_pred ceeeeehhhhcccccHHHHHHHHHHHHHHHHhhccccccCCCcccccchHHHHHHHHHHhcccchhHHHHHHHhh--ccC
Confidence 9999999999999999999999999999999988642 1224799999999999999999999984432 336
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCccc----cccchhhHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHhhhhhhHH
Q 016904 192 PITSLYYIAPCSFVFLFVPWYLLEKPMME----VSQIQFNFWIFFSNALCALALNFSIFLVIGRTGAVTIRVAGVLKDWI 267 (380)
Q Consensus 192 ~~~~~~~~~~~~~i~l~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~a~~~s~~~~l~~v~ 267 (380)
...++.++++.+.+.+....++. +..++ ....+..+|-+..-++++...+.+.|..+...+|.+.|+++..+..+
T Consensus 202 g~~MM~~~NlwStL~Lg~g~lfT-GElweF~yF~~RhP~~~~~l~l~ai~s~LGQ~fIF~tv~~FgPLtCSivTTTRKfF 280 (337)
T KOG1580|consen 202 GTSMMFYTNLWSTLYLGAGLLFT-GELWEFFYFVQRHPYVFWDLTLLAIASCLGQWFIFKTVEEFGPLTCSIVTTTRKFF 280 (337)
T ss_pred chhhHHHHHHHHHHHhhhhheeh-hhHHHHHHHHHhccHHHHHHHHHHHHHHhhhHHHHHHHHHhCCeeEEEEeehHHHH
Confidence 67899999999988776555432 22121 22344556666666777888888889999999999999999999999
Q ss_pred HHHHHHHhcCCCCcchhhhHHHHHHHHHHHHHHH
Q 016904 268 LIALSTVIFPESTITGLNIIGYAIALCGVVMYNY 301 (380)
Q Consensus 268 ~~~~~~l~~~~~~~~~~~~~G~~lii~g~~~~~~ 301 (380)
+++.++++| +.+++..||+|.++++.|...-..
T Consensus 281 Til~SVllf-~npls~rQwlgtvlVF~aL~~D~~ 313 (337)
T KOG1580|consen 281 TILISVLLF-NNPLSGRQWLGTVLVFSALTADVV 313 (337)
T ss_pred HHHHHHHHh-cCcCcHHHHHHHHHHHHHhhhHhh
Confidence 999999999 777999999999999999876544
No 21
>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=99.84 E-value=6.1e-18 Score=149.26 Aligned_cols=260 Identities=17% Similarity=0.167 Sum_probs=210.5
Q ss_pred cCCCcHHHHHHHHHHHHHHHHHHHHHHhhccCCCcccHHhhhHHhhhHHHHHHHHHHHHhhhhhcccHhHHHHHHHHHHH
Q 016904 39 FNFPFPITLTMIHMGFSGVVAFFLVRVFKVVSPVKMTFEIYATCVVPISAFFASSLWFGNTAYLHISVAFIQMLKALMPV 118 (380)
Q Consensus 39 ~~~~~p~~~~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~il~~~~pi 118 (380)
-+|.+|.++.+.|-+.+.++-.....+.+.....+.+ ++.....++....+.++.+.|++|++.++..+-+++--+
T Consensus 46 ~rF~~~~fL~~~q~l~~~~~s~~~l~~~k~~~~~~ap----l~~y~~is~tn~~s~~~~yeaLKyvSyPtq~LaKscKmI 121 (327)
T KOG1581|consen 46 ERFEHSLFLVFCQRLVALLVSYAMLKWWKKELSGVAP----LYKYSLISFTNTLSSWCGYEALKYVSYPTQTLAKSCKMI 121 (327)
T ss_pred ccccccHHHHHHHHHHHHHHHHHHHhcccccCCCCCc----hhHHhHHHHHhhcchHHHHHHHHhccchHHHHHHHhhhh
Confidence 4677799999999999888876665543333223333 455567788888999999999999999999999999999
Q ss_pred HHHHHHHHhccccccHhHHHHHHHHHhhhheeeecc---------ceehHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCC
Q 016904 119 ATFFMAVLCGTDKARLDVFLNMVLVSVGVVISSYGE---------IHFNIVGTLYQVTGIVAEALRLVLTQVLLQKKGLT 189 (380)
Q Consensus 119 ~v~ll~~~~l~ek~~~~~~~~v~l~~~Gv~l~~~~~---------~~~~~~G~~l~l~s~~~~a~~~v~~~~~~~~~~~~ 189 (380)
.++++..++.++|++..+++...++..|+.+....+ ....+.|+.+.....+..++-+..++++.++ .+
T Consensus 122 PVmlmg~Lvy~~ky~~~eYl~~~LIs~GvsiF~l~~~s~s~~~~g~~ns~~G~~Ll~~~L~fDgfTn~tQd~lf~~--~k 199 (327)
T KOG1581|consen 122 PVMLMGTLVYGRKYSSFEYLVAFLISLGVSIFSLFPNSDSSSKSGRENSPIGILLLFGYLLFDGFTNATQDSLFKK--YK 199 (327)
T ss_pred HHHHHHHHHhcCccCcHHHHHHHHHHhheeeEEEecCCCCccccCCCCchHhHHHHHHHHHHHhhHHhHHHHHhcc--CC
Confidence 999999999999999999999999999998876632 1245799999999999999999999999885 46
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHhhcCCccc---cccchhhHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHhhhhhhH
Q 016904 190 LNPITSLYYIAPCSFVFLFVPWYLLEKPMME---VSQIQFNFWIFFSNALCALALNFSIFLVIGRTGAVTIRVAGVLKDW 266 (380)
Q Consensus 190 ~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~a~~~s~~~~l~~v 266 (380)
+++..++++.+++.++.-..-....+..... ....+..++-++.-++++...+...+.-+++.|+.+.+.++..+.+
T Consensus 200 ~s~~~mM~~vNLf~~i~~~~~li~qg~~~~av~F~~~hp~~~~Di~l~s~~gavGQ~FI~~TI~~FGslt~t~I~ttRk~ 279 (327)
T KOG1581|consen 200 VSSLHMMFGVNLFSAILNGTYLILQGHLLPAVSFIKEHPDVAFDILLYSTCGAVGQLFIFYTIERFGSLTFTTIMTTRKM 279 (327)
T ss_pred ccHhHHHHHHHHHHHHHHHHhhhcCCCCchHHHHHHcChhHHHHHHHHHHhhhhhhheehhhHhhcccHHHHHHHHHHHH
Confidence 8999999999999987766553322211111 1223333444555577777788888889999999999999999999
Q ss_pred HHHHHHHHhcCCCCcchhhhHHHHHHHHHHHHHHHhhhh
Q 016904 267 ILIALSTVIFPESTITGLNIIGYAIALCGVVMYNYIKVK 305 (380)
Q Consensus 267 ~~~~~~~l~~~~~~~~~~~~~G~~lii~g~~~~~~~~~~ 305 (380)
++++++.+.| ++++++.||+|..+++.|+.+-.+.+.+
T Consensus 280 ~si~lS~i~f-~h~~s~~q~~g~~iVFg~i~l~~~~k~~ 317 (327)
T KOG1581|consen 280 VSIMLSCIVF-GHPLSSEQWLGVLIVFGGIFLEILLKKK 317 (327)
T ss_pred HHHHHHHHHh-CCccchhhccCeeeehHHHHHHHHHHHh
Confidence 9999999999 6679999999999999999987665554
No 22
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=99.83 E-value=2.8e-18 Score=147.34 Aligned_cols=249 Identities=11% Similarity=0.070 Sum_probs=192.6
Q ss_pred HHHHHhcCCCcCCCcHHHHHHHHHHHHHHHHHHHHHHhhccCCCcccHHhhhHHhhhHHHHHHHHHHHHhhhhhcccHhH
Q 016904 29 YNKWVLSPKYFNFPFPITLTMIHMGFSGVVAFFLVRVFKVVSPVKMTFEIYATCVVPISAFFASSLWFGNTAYLHISVAF 108 (380)
Q Consensus 29 ~~k~~l~~~~~~~~~p~~~~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~ 108 (380)
+.|.++. .+. |.-.+.+|..+++++++.+.+-++ .+.++++ +..++..|...+.++.++|.+++.+|.+.
T Consensus 30 ~Ak~LFP----~vG-~~g~t~lRl~~aaLIll~l~RPwr----~r~~~~~-~~~~~~yGvsLg~MNl~FY~si~riPlGi 99 (292)
T COG5006 30 FAKSLFP----LVG-AAGVTALRLAIAALILLALFRPWR----RRLSKPQ-RLALLAYGVSLGGMNLLFYLSIERIPLGI 99 (292)
T ss_pred HHHHHcc----ccC-hhhHHHHHHHHHHHHHHHHhhHHH----hccChhh-hHHHHHHHHHHHHHHHHHHHHHHhccchh
Confidence 5688888 777 999999999999999988876333 3455666 57778889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhccccccHhHHHHHHHHHhhhheeeecc---ceehHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 016904 109 IQMLKALMPVATFFMAVLCGTDKARLDVFLNMVLVSVGVVISSYGE---IHFNIVGTLYQVTGIVAEALRLVLTQVLLQK 185 (380)
Q Consensus 109 ~~il~~~~pi~v~ll~~~~l~ek~~~~~~~~v~l~~~Gv~l~~~~~---~~~~~~G~~l~l~s~~~~a~~~v~~~~~~~~ 185 (380)
+..+-++-|+.+++++- +| .+..+-+.+.+.|+.++.-.+ .+.|..|..+++++..||+.|.+..+|.-+.
T Consensus 100 AVAiEF~GPL~vA~~~s----Rr--~~d~vwvaLAvlGi~lL~p~~~~~~~lDp~Gv~~Al~AG~~Wa~YIv~G~r~g~~ 173 (292)
T COG5006 100 AVAIEFTGPLAVALLSS----RR--LRDFVWVALAVLGIWLLLPLGQSVWSLDPVGVALALGAGACWALYIVLGQRAGRA 173 (292)
T ss_pred hhhhhhccHHHHHHHhc----cc--hhhHHHHHHHHHHHHhheeccCCcCcCCHHHHHHHHHHhHHHHHHHHHcchhccc
Confidence 99999999999988753 33 445555666777776654432 5678999999999999999999999998543
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHhhcCCccccccchhhHHHHHHHHHHHHH-HHHHHHHHHhhcchhHHHHhhhhh
Q 016904 186 KGLTLNPITSLYYIAPCSFVFLFVPWYLLEKPMMEVSQIQFNFWIFFSNALCALA-LNFSIFLVIGRTGAVTIRVAGVLK 264 (380)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~a~~~s~~~~l~ 264 (380)
.+...-+.+.+.++.++.+|+.....++... .+.. ..+.+..++++.. -+.+-..++++.++.+.+++..+|
T Consensus 174 ----~~g~~g~a~gm~vAaviv~Pig~~~ag~~l~--~p~l-l~laLgvavlSSalPYsLEmiAL~rlp~~~F~~LlSLe 246 (292)
T COG5006 174 ----EHGTAGVAVGMLVAALIVLPIGAAQAGPALF--SPSL-LPLALGVAVLSSALPYSLEMIALRRLPARTFGTLLSLE 246 (292)
T ss_pred ----CCCchHHHHHHHHHHHHHhhhhhhhcchhhc--ChHH-HHHHHHHHHHhcccchHHHHHHHhhCChhHHHHHHHhh
Confidence 3566677778888898888988755444332 1111 1122222333332 334456689999999999999999
Q ss_pred hHHHHHHHHHhcCCCCcchhhhHHHHHHHHHHHHHHH
Q 016904 265 DWILIALSTVIFPESTITGLNIIGYAIALCGVVMYNY 301 (380)
Q Consensus 265 ~v~~~~~~~l~~~~~~~~~~~~~G~~lii~g~~~~~~ 301 (380)
|.++.+.|++++ ||.+|+.||+|+++|+.+..-..+
T Consensus 247 Pa~aAl~G~i~L-~e~ls~~qwlaI~~ViaAsaG~~l 282 (292)
T COG5006 247 PALAALSGLIFL-GETLTLIQWLAIAAVIAASAGSTL 282 (292)
T ss_pred HHHHHHHHHHHh-cCCCCHHHHHHHHHHHHHHhcccc
Confidence 999999999999 777999999999999998875444
No 23
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=99.83 E-value=3e-17 Score=144.91 Aligned_cols=276 Identities=12% Similarity=0.094 Sum_probs=204.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCcCCCcHHHHHHHHHHHHHHHHHHHHHHhhccCCC---cccHHhhhHHhhhHHHHHH
Q 016904 15 YLLIYILLSSGVILYNKWVLSPKYFNFPFPITLTMIHMGFSGVVAFFLVRVFKVVSPV---KMTFEIYATCVVPISAFFA 91 (380)
Q Consensus 15 ~~~~~~~~~~~~~~~~k~~l~~~~~~~~~p~~~~~~r~~~~~~~l~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ 91 (380)
..+..++.+..+.++.|.+-. .| +..+...|.+.+..++..+....|+.+.. ..++|. +......++..+
T Consensus 11 ~~l~Ay~lwG~lp~y~kll~~-----~~-~~eIlahRviwS~~~~l~ll~~~r~~~~~~~~~~~p~~-~~~~~l~a~li~ 83 (293)
T COG2962 11 LALLAYLLWGLLPLYFKLLEP-----LP-ATEILAHRVIWSFPFMLALLFLLRQWRELKQLLKQPKT-LLMLALTALLIG 83 (293)
T ss_pred HHHHHHHHHHHHHHHHHHHcc-----CC-HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhCcHH-HHHHHHHHHHHH
Confidence 344444444555778787655 77 89999999998888777766554443221 122233 344555666777
Q ss_pred HHHHHHhhhhhcccHhHHHHHHHHHHHHHHHHHHHhccccccHhHHHHHHHHHhhhheeeeccceehHHHHHHHHHHHHH
Q 016904 92 SSLWFGNTAYLHISVAFIQMLKALMPVATFFMAVLCGTDKARLDVFLNMVLVSVGVVISSYGEIHFNIVGTLYQVTGIVA 171 (380)
Q Consensus 92 ~~~~~~~~al~~~~~~~~~il~~~~pi~v~ll~~~~l~ek~~~~~~~~v~l~~~Gv~l~~~~~~~~~~~G~~l~l~s~~~ 171 (380)
.+.+.+.||...--+-.+++=.+..|++.++++.+++|||+++.||++++++.+||........+.+|..+. =+++
T Consensus 84 ~nW~lfiWAvn~g~~leaSLGY~InPL~~VllG~lflkErls~~Q~iAV~lA~~GV~~~~~~~g~lpwval~----la~s 159 (293)
T COG2962 84 LNWWLFIWAVNNGHVLEASLGYFINPLVNVLLGRLFLKERLSRLQWIAVGLAAAGVLIQTWLLGSLPWVALA----LALS 159 (293)
T ss_pred HHHHHhheecCCCchhHHHhHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHcCCCcHHHHH----HHHH
Confidence 788899999999999999999999999999999999999999999999999999999888776777775544 4568
Q ss_pred HHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHHHHHhhcCCcc-ccccchhhHHHHHHHHHHHHHHHHHHHHHHh
Q 016904 172 EALRLVLTQVLLQKKGLTLNPITSLYYIAPCSFVFLFVPWYLLEKPMM-EVSQIQFNFWIFFSNALCALALNFSIFLVIG 250 (380)
Q Consensus 172 ~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 250 (380)
|++|..+-|+. + +++.+-.+...+.-.+..+......+.... ........+++++..|..+...-.+...+-+
T Consensus 160 f~~Ygl~RK~~-~-----v~a~~g~~lE~l~l~p~al~yl~~l~~~~~~~~~~~~~~~~LLv~aG~vTavpL~lf~~aa~ 233 (293)
T COG2962 160 FGLYGLLRKKL-K-----VDALTGLTLETLLLLPVALIYLLFLADSGQFLQQNANSLWLLLVLAGLVTAVPLLLFAAAAK 233 (293)
T ss_pred HHHHHHHHHhc-C-----CchHHhHHHHHHHHhHHHHHHHHHHhcCchhhhcCCchHHHHHHHhhHHHHHHHHHHHHHHh
Confidence 88888866654 3 466666666555444444433333333221 1212334455666677777766666777899
Q ss_pred hcchhHHHHhhhhhhHHHHHHHHHhcCCCCcchhhhHHHHHHHHHHHHHHHhhhhhhh
Q 016904 251 RTGAVTIRVAGVLKDWILIALSTVIFPESTITGLNIIGYAIALCGVVMYNYIKVKDVR 308 (380)
Q Consensus 251 ~~~a~~~s~~~~l~~v~~~~~~~l~~~~~~~~~~~~~G~~lii~g~~~~~~~~~~~~~ 308 (380)
+.+=.+.+++.|.+|....+++++++ +|+++..+++..++|-+|+.++.+...++.+
T Consensus 234 ~lpls~~G~lqYi~Ptl~fllav~i~-~E~~~~~~~~~F~~IW~aL~l~~~d~l~~~r 290 (293)
T COG2962 234 RLPLSTLGFLQYIEPTLMFLLAVLIF-GEPFDSDQLVTFAFIWLALALFSIDGLYTAR 290 (293)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999 8889999999999999999999986655433
No 24
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=99.82 E-value=1.8e-21 Score=167.83 Aligned_cols=278 Identities=12% Similarity=0.097 Sum_probs=203.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCcHHHHHHHHHHHHHHHHHHHHHHhhccCCCcccHHhhhHHhhhHHH
Q 016904 9 LVLTYLYLLIYILLSSGVILYNKWVLSPKYFNFPFPITLTMIHMGFSGVVAFFLVRVFKVVSPVKMTFEIYATCVVPISA 88 (380)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~k~~l~~~~~~~~~p~~~~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (380)
+....+..+- ++.+..+.+..|... ++ |......|+++-.++.++....++..--.+...| +.+++-|+
T Consensus 37 ~~gl~l~~vs-~ff~~~~vv~t~~~e------~~-p~e~a~~r~l~~mlit~pcliy~~~~v~gp~g~R---~~LiLRg~ 105 (346)
T KOG4510|consen 37 NLGLLLLTVS-YFFNSCMVVSTKVLE------ND-PMELASFRLLVRMLITYPCLIYYMQPVIGPEGKR---KWLILRGF 105 (346)
T ss_pred ccCceehhhH-HHHhhHHHhhhhhhc------cC-hhHhhhhhhhhehhhhheEEEEEeeeeecCCCcE---EEEEeehh
Confidence 3333333444 455555655555433 44 8888888877665555544332222110111222 23455567
Q ss_pred HHHHHHHHHhhhhhcccHhHHHHHHHHHHHHHHHHHHHhccccccHhHHHHHHHHHhhhheeeeccc-------------
Q 016904 89 FFASSLWFGNTAYLHISVAFIQMLKALMPVATFFMAVLCGTDKARLDVFLNMVLVSVGVVISSYGEI------------- 155 (380)
Q Consensus 89 ~~~~~~~~~~~al~~~~~~~~~il~~~~pi~v~ll~~~~l~ek~~~~~~~~v~l~~~Gv~l~~~~~~------------- 155 (380)
....+..+.|+|++|.+.++|.++.+++|.++.++++.++||+.++.+.++..+.+.||++++.+..
T Consensus 106 mG~tgvmlmyya~~~mslaDA~vItFssPvft~ifaw~~LkE~~t~~eaL~s~itl~GVVLIvRPpFlFG~~t~g~~~s~ 185 (346)
T KOG4510|consen 106 MGFTGVMLMYYALMYMSLADAVVITFSSPVFTIIFAWAFLKEPFTKFEALGSLITLLGVVLIVRPPFLFGDTTEGEDSSQ 185 (346)
T ss_pred hhhhHHHHHHHHHhhcchhheEEEEecChHHHHHHHHHHHcCCCcHHHHHHHHHhhheEEEEecCCcccCCCcccccccc
Confidence 6667778899999999999999999999999999999999999999999999999999999987531
Q ss_pred -eehHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHHHHHhhcCCccccccchhhHHHHHHH
Q 016904 156 -HFNIVGTLYQVTGIVAEALRLVLTQVLLQKKGLTLNPITSLYYIAPCSFVFLFVPWYLLEKPMMEVSQIQFNFWIFFSN 234 (380)
Q Consensus 156 -~~~~~G~~l~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (380)
+.+..|.+.++.+++..|-..++.|++-|+ .|....+.|..+++++..++...... .+..+.-.-++|+++.-
T Consensus 186 ~~~~~~gt~aai~s~lf~asvyIilR~iGk~----~h~~msvsyf~~i~lV~s~I~~~~ig--~~~lP~cgkdr~l~~~l 259 (346)
T KOG4510|consen 186 VEYDIPGTVAAISSVLFGASVYIILRYIGKN----AHAIMSVSYFSLITLVVSLIGCASIG--AVQLPHCGKDRWLFVNL 259 (346)
T ss_pred ccccCCchHHHHHhHhhhhhHHHHHHHhhcc----ccEEEEehHHHHHHHHHHHHHHhhcc--ceecCccccceEEEEEe
Confidence 223568899999999999888888887555 46666677777777776665544433 22222223445666666
Q ss_pred HHHHHHHHHHHHHHHhhcchhHHHHhhhhhhHHHHHHHHHhcCCCCcchhhhHHHHHHHHHHHHHHHhhh
Q 016904 235 ALCALALNFSIFLVIGRTGAVTIRVAGVLKDWILIALSTVIFPESTITGLNIIGYAIALCGVVMYNYIKV 304 (380)
Q Consensus 235 ~~~~~~~~~~~~~~i~~~~a~~~s~~~~l~~v~~~~~~~l~~~~~~~~~~~~~G~~lii~g~~~~~~~~~ 304 (380)
|+.+++.+.....++++--|...++..+...+++.++.+++| ++.++++.|.|+++++.+.++....|.
T Consensus 260 GvfgfigQIllTm~lQiErAGpvaim~~~dvvfAf~wqv~ff-~~~Pt~ws~~Ga~~vvsS~v~~a~~kw 328 (346)
T KOG4510|consen 260 GVFGFIGQILLTMGLQIERAGPVAIMTYTDVVFAFFWQVLFF-GHWPTIWSWVGAVMVVSSTVWVALKKW 328 (346)
T ss_pred hhhhhHHHHHHHHHhhhhccCCeehhhHHHHHHHHHHHHHHh-cCCChHHHhhceeeeehhHHHHHHHHH
Confidence 888999999888888887777789999999999999999999 667999999999999998887665443
No 25
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=99.81 E-value=2.4e-17 Score=152.25 Aligned_cols=264 Identities=13% Similarity=0.113 Sum_probs=191.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCcHHHHHHHHHHHHHHHHHHHHHHhhccCCCcccHHhhhHHhhhHHHH
Q 016904 10 VLTYLYLLIYILLSSGVILYNKWVLSPKYFNFPFPITLTMIHMGFSGVVAFFLVRVFKVVSPVKMTFEIYATCVVPISAF 89 (380)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~k~~l~~~~~~~~~p~~~~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (380)
+..++.+++|+.... ..|... +++ +..+. |..++.+++..+....+. + +.+.++.+..-+..|+.
T Consensus 4 l~~lia~~~wGs~g~----~~k~~~-----g~~-~~~~~--~~~~g~l~~~~~~~~~~~-~--~~~~~~~~~~g~l~G~~ 68 (290)
T TIGR00776 4 LIALIPALFWGSFVL----INVKIG-----GGP-YSQTL--GTTFGALILSIAIAIFVL-P--EFWALSIFLVGLLSGAF 68 (290)
T ss_pred HHHHHHHHHHhhhHH----HHhccC-----CCH-HHHHH--HHHHHHHHHHHHHHHHhC-C--cccccHHHHHHHHHHHH
Confidence 344555666766554 345432 455 43333 777777776665544332 1 12223334556666777
Q ss_pred HHHHHHHHhhhhhcccHhHHHHHHH-HHHHHHHHHHHHhccccccHhH----HHHHHHHHhhhheeeeccce-------e
Q 016904 90 FASSLWFGNTAYLHISVAFIQMLKA-LMPVATFFMAVLCGTDKARLDV----FLNMVLVSVGVVISSYGEIH-------F 157 (380)
Q Consensus 90 ~~~~~~~~~~al~~~~~~~~~il~~-~~pi~v~ll~~~~l~ek~~~~~----~~~v~l~~~Gv~l~~~~~~~-------~ 157 (380)
++.++.+++.+.++++++.+..+.+ +.++++.+++.+++|||.++++ ++|+++.++|++++...+.+ .
T Consensus 69 w~ig~~~~~~ai~~~gva~a~~i~~~~~~v~~~l~~~~~f~e~~t~~~~~~~~~g~~l~l~G~~l~~~~~~~~~~~~~~~ 148 (290)
T TIGR00776 69 WALGQINQFKSMRYMGVSKTMPISTGFQLVGGTLFGVIVFGEWSTSIQTLLGLLALILIIIGVYLTSRSKDKSAGIKSEF 148 (290)
T ss_pred HHhhhhhHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhHheEEecccccccccccc
Confidence 8899999999999999999999998 8889999999999999999999 99999999999998764321 2
Q ss_pred h-HHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCHHHHH---HHHHHHHHHHHHHHHHhhcCCccccccchhhHHHHHH
Q 016904 158 N-IVGTLYQVTGIVAEALRLVLTQVLLQKKGLTLNPITSL---YYIAPCSFVFLFVPWYLLEKPMMEVSQIQFNFWIFFS 233 (380)
Q Consensus 158 ~-~~G~~l~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (380)
+ ..|+++++.++++|++|.+..|+. + ++|.... .+..+++.....++.. ...+ . .....+..+.
T Consensus 149 ~~~~Gi~~~l~sg~~y~~~~~~~~~~-~-----~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~-~----~~~~~~~~~~ 216 (290)
T TIGR00776 149 NFKKGILLLLMSTIGYLVYVVVAKAF-G-----VDGLSVLLPQAIGMVIGGIIFNLGHI-LAKP-L----KKYAILLNIL 216 (290)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHc-C-----CCcceehhHHHHHHHHHHHHHHHHHh-cccc-h----HHHHHHHHHH
Confidence 3 689999999999999999999975 2 4666663 3333344433333321 0111 1 1223344444
Q ss_pred HHHHHHHHHHHHHHHHh-hcchhHHHHhhhhhhHHHHHHHHHhcCCCCcchhhh----HHHHHHHHHHHHHHH
Q 016904 234 NALCALALNFSIFLVIG-RTGAVTIRVAGVLKDWILIALSTVIFPESTITGLNI----IGYAIALCGVVMYNY 301 (380)
Q Consensus 234 ~~~~~~~~~~~~~~~i~-~~~a~~~s~~~~l~~v~~~~~~~l~~~~~~~~~~~~----~G~~lii~g~~~~~~ 301 (380)
.|++....+.+++...+ +.++.+++++.+.+|+.+++++++++ +|+.++.|+ +|.++++.|+.+...
T Consensus 217 ~Gi~~~ia~~~y~~~~~~~~~~~~~~~ls~~~pvia~~~~v~~l-~E~~~~~~~~~~~iG~~lIi~~~~l~~~ 288 (290)
T TIGR00776 217 PGLMWGIGNFFYLFSAQPKVGVATSFSLSQLGVIISTLGGILIL-GEKKTKREMIAISVGIILIIIAANILGI 288 (290)
T ss_pred HHHHHHHHHHHHHHHcccccchhhHHHHHHHHHHHHHHHHHHHh-ccCCCcceeehhHHHHHHHHHHHHHHhc
Confidence 67777777777878888 99999999999999999999999999 777999999 999999999987543
No 26
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=99.80 E-value=2.3e-18 Score=155.74 Aligned_cols=226 Identities=17% Similarity=0.206 Sum_probs=186.3
Q ss_pred hhhHHhhhHHHHHHHHHHHHhhhhhcccHhHHHHHHHHHHHHHHHHHHHhccccccHhHHHHHHHHHhhhheeeeccc--
Q 016904 78 IYATCVVPISAFFASSLWFGNTAYLHISVAFIQMLKALMPVATFFMAVLCGTDKARLDVFLNMVLVSVGVVISSYGEI-- 155 (380)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~il~~~~pi~v~ll~~~~l~ek~~~~~~~~v~l~~~Gv~l~~~~~~-- 155 (380)
+-.+..+..+.++...++++|.|+.|++++..+++.++.-+|+..++.++..||+++.|.+++.+.++|++++..++.
T Consensus 157 ~~ak~sl~fc~lWF~anl~~naALa~TsVAS~TilSStSs~FtL~la~if~~e~ft~sKllav~~si~GViiVt~~~s~~ 236 (416)
T KOG2765|consen 157 QTAKLSLFFCPLWFLANLTSNAALAFTSVASTTILSSTSSFFTLFLAAIFPVERFTLSKLLAVFVSIAGVIIVTMGDSKQ 236 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHcCcchhhHHHHHHHHHhhccEEEEEeccccc
Confidence 334455556667788899999999999999999999999999999999999999999999999999999999987632
Q ss_pred ------eehHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHHHHHhhcCCccccccc--hhh
Q 016904 156 ------HFNIVGTLYQVTGIVAEALRLVLTQVLLQKKGLTLNPITSLYYIAPCSFVFLFVPWYLLEKPMMEVSQI--QFN 227 (380)
Q Consensus 156 ------~~~~~G~~l~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~--~~~ 227 (380)
.....|.++++.+++.||.|.++.||...+++.++|-..+.++.+++..+++.|+..+.+....+.... ...
T Consensus 237 ~~~~~a~~~llG~llaL~sA~~YavY~vllk~~~~~eg~rvdi~lffGfvGLfnllllwP~l~iL~~~~~e~F~lP~~~q 316 (416)
T KOG2765|consen 237 NSDLPASRPLLGNLLALLSALLYAVYTVLLKRKIGDEGERVDIQLFFGFVGLFNLLLLWPPLIILDFFGEERFELPSSTQ 316 (416)
T ss_pred cccCCccchhHHHHHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHhHHHHHHHHhccCcccCCCCce
Confidence 234789999999999999999999998888767788888999999999999998877654332221111 111
Q ss_pred HH-HHHHHHHHHHHHHHHHHHHHhhcchhHHHHhhhhhhHHHHHHHHHhcCCCCcchhhhHHHHHHHHHHHHHHHhhh
Q 016904 228 FW-IFFSNALCALALNFSIFLVIGRTGAVTIRVAGVLKDWILIALSTVIFPESTITGLNIIGYAIALCGVVMYNYIKV 304 (380)
Q Consensus 228 ~~-~~~~~~~~~~~~~~~~~~~i~~~~a~~~s~~~~l~~v~~~~~~~l~~~~~~~~~~~~~G~~lii~g~~~~~~~~~ 304 (380)
+. +++.+.+..+..-++|.++.-.++|.++.+-..+....+++...++- +.++++.+++|...|++|.+..++..+
T Consensus 317 ~~~vv~~~ligtvvSDylW~~a~~lTs~Lv~TlgmSltIPLA~~aD~l~k-~~~~S~~~iiGsi~Ifv~Fv~vn~~~~ 393 (416)
T KOG2765|consen 317 FSLVVFNNLIGTVVSDYLWAKAVLLTSPLVVTLGMSLTIPLAMFADVLIK-GKHPSALYIIGSIPIFVGFVIVNISSE 393 (416)
T ss_pred eEeeeHhhHHHHHHHHHHHHHHHHhccchhheeeeeEeeeHHHHHHHHHc-CCCCCHHHHHHHHHHHHHHhheecccc
Confidence 22 23334455666778899999999999999999999999999988887 777999999999999999999887543
No 27
>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=99.80 E-value=2.2e-18 Score=149.14 Aligned_cols=285 Identities=13% Similarity=0.190 Sum_probs=223.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCC-cHHHHHHHHHHHHHHHHHHHHHHhhccCCCcccHHhhhHHhhhHH
Q 016904 9 LVLTYLYLLIYILLSSGVILYNKWVLSPKYFNFP-FPITLTMIHMGFSGVVAFFLVRVFKVVSPVKMTFEIYATCVVPIS 87 (380)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~k~~l~~~~~~~~-~p~~~~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (380)
+...+++.....+.....-.+..++++ ..+|. +-+.+++.|+++-..+.+..+... +.+++..+||.| ..++
T Consensus 41 w~QFlic~~g~Ff~Yl~yGy~qElif~--~~gfkp~GWylTlvQf~~Ysg~glie~~~~-~~k~r~iP~rtY----~~la 113 (367)
T KOG1582|consen 41 WTQFLICSAGVFFLYLVYGYLQELIFN--VEGFKPFGWYLTLVQFLVYSGFGLIELQLI-QTKRRVIPWRTY----VILA 113 (367)
T ss_pred hhhHHHHHhHHHHHHHHHHHHHHHHhc--cccCcccchHHHHHHHHHHHhhhheEEEee-cccceecchhHh----hhhH
Confidence 334555555555666666667888888 55565 679999999987544443333222 234556677665 5556
Q ss_pred HHHHHHHHHHhhhhhcccHhHHHHHHHHHHHHHHHHHHHhccccccHhHHHHHHHHHhhhheeeecc----ceehHHHHH
Q 016904 88 AFFASSLWFGNTAYLHISVAFIQMLKALMPVATFFMAVLCGTDKARLDVFLNMVLVSVGVVISSYGE----IHFNIVGTL 163 (380)
Q Consensus 88 ~~~~~~~~~~~~al~~~~~~~~~il~~~~pi~v~ll~~~~l~ek~~~~~~~~v~l~~~Gv~l~~~~~----~~~~~~G~~ 163 (380)
++..+.+.+.+-++.|++.+...+++++..+-+++.+.++.++|+....+.+..+...|+++....| .+++..|+.
T Consensus 114 ~~t~gtmGLsn~SlgYLNYPtQviFKccKliPVmiggifIqGkRY~v~d~~aA~lm~lGli~FTLADs~~sPNF~~~Gv~ 193 (367)
T KOG1582|consen 114 FLTVGTMGLSNGSLGYLNYPTQVIFKCCKLIPVMIGGIFIQGKRYGVHDYIAAMLMSLGLIWFTLADSQTSPNFNLIGVM 193 (367)
T ss_pred hhhhhccccCcCccccccCcHHHHHHhhhhhhhhheeeeeccccccHHHHHHHHHHHHHHHhhhhcccccCCCcceeeHH
Confidence 7777888999999999999999999999999999999999999999999999999999999988866 457889999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHHHHHhhcCCcccc---ccchh-hHHHHHHHHHHHH
Q 016904 164 YQVTGIVAEALRLVLTQVLLQKKGLTLNPITSLYYIAPCSFVFLFVPWYLLEKPMMEV---SQIQF-NFWIFFSNALCAL 239 (380)
Q Consensus 164 l~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~ 239 (380)
++-++.++.|+-..++++.++.++ -+..++++|...++.+.++.+..........+ ...++ .....++-++.++
T Consensus 194 mIsgALl~DA~iGNvQEk~m~~~~--~ss~EmvfySy~iG~vflf~~mvlTge~f~a~~fcaehp~~tyGy~~~~s~~gy 271 (367)
T KOG1582|consen 194 MISGALLADAVIGNVQEKAMKMNP--ASSSEMVFYSYGIGFVFLFAPMVLTGELFSAWTFCAEHPVRTYGYAFLFSLAGY 271 (367)
T ss_pred HHHHHHHHHHHhhHHHHHHHhhCC--CCcceEEEeeecccHHHHHHHHHhcccchhhhHHHHhCcHhHHHHHHHHHHHhH
Confidence 999999999999999999998764 35688899999999888887766543321111 11112 2223344567777
Q ss_pred HHHHHHHHHHhhcchhHHHHhhhhhhHHHHHHHHHhcCCCCcchhhhHHHHHHHHHHHHHHHhh
Q 016904 240 ALNFSIFLVIGRTGAVTIRVAGVLKDWILIALSTVIFPESTITGLNIIGYAIALCGVVMYNYIK 303 (380)
Q Consensus 240 ~~~~~~~~~i~~~~a~~~s~~~~l~~v~~~~~~~l~~~~~~~~~~~~~G~~lii~g~~~~~~~~ 303 (380)
+........++..+|.+++.++..+..+++++++++| ..+++....-|..+++.|+++-.+.+
T Consensus 272 lG~~~VLalI~~fGA~~aatvTTaRKavTi~lSfllF-sKPfT~qy~~~gllv~lgI~Ln~ysk 334 (367)
T KOG1582|consen 272 LGIVFVLALIKLFGALIAATVTTARKAVTILLSFLLF-SKPFTEQYVWSGLLVVLGIYLNMYSK 334 (367)
T ss_pred hhHHHHHHHHHHhchhHHHHHHHhHhHHHHHHHHHHH-cCchHHHHhhhhHHHHHHHHhhcccC
Confidence 7777777789999999999999999999999999999 88899999999999999999877655
No 28
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]
Probab=99.78 E-value=1.1e-15 Score=138.91 Aligned_cols=283 Identities=13% Similarity=0.117 Sum_probs=205.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCcCCCcHHHHHHHHHHHHHHHHHHHHHHhh----ccCCCc------ccHHhhhHHh
Q 016904 14 LYLLIYILLSSGVILYNKWVLSPKYFNFPFPITLTMIHMGFSGVVAFFLVRVFK----VVSPVK------MTFEIYATCV 83 (380)
Q Consensus 14 ~~~~~~~~~~~~~~~~~k~~l~~~~~~~~~p~~~~~~r~~~~~~~l~~~~~~~~----~~~~~~------~~~~~~~~~~ 83 (380)
..+++-.+.+.++.+..|+.-..++..|- |.+..++-=++-.+++......-. ++..+. ..+++ ..++
T Consensus 18 ~~l~~~t~~~~~l~l~l~ys~~~~~~~f~-~tt~v~~~Ei~Kl~~c~~~~~~~~~~~~~~~~~~l~~~i~~~~~~-~lk~ 95 (345)
T KOG2234|consen 18 LSLIVLTAQNTALTLLLRYSRTREKPMFL-PTTAVFLTEVIKLVFCLFLLLFEERKYAKKSLKSLSKEILAAPRE-TLKV 95 (345)
T ss_pred HHHHHHHHHHhhHHHHHHHHhcCCCCCcc-hhHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhhcCHHHHhChHH-HHHH
Confidence 34444456667778888998886655666 777776665555555554443221 111111 12334 3455
Q ss_pred hhHHHHHHHHHHHHhhhhhcccHhHHHHHHHHHHHHHHHHHHHhccccccHhHHHHHHHHHhhhheeeecc---------
Q 016904 84 VPISAFFASSLWFGNTAYLHISVAFIQMLKALMPVATFFMAVLCGTDKARLDVFLNMVLVSVGVVISSYGE--------- 154 (380)
Q Consensus 84 ~~~~~~~~~~~~~~~~al~~~~~~~~~il~~~~pi~v~ll~~~~l~ek~~~~~~~~v~l~~~Gv~l~~~~~--------- 154 (380)
...++.|+..+.+.+.++.+.+++++++...+....++++.+++++||++++||.++++.++|++++..+.
T Consensus 96 ~vPa~iYalqNnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~Qw~Al~lL~~Gv~~vQ~~~~~~~~a~~~ 175 (345)
T KOG2234|consen 96 SVPALIYALQNNLQYVALSNLDAATYQVTYQLKILTTAIFSVLILRRKLSRLQWMALVLLFAGVALVQLPSLSPTGAKSE 175 (345)
T ss_pred HHHHHHHHHhhhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhccCCCCCCccCC
Confidence 55688999988899999999999999999999999999999999999999999999999999999887321
Q ss_pred --ceehHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHHHHHhhcCCccc----cccchhhH
Q 016904 155 --IHFNIVGTLYQVTGIVAEALRLVLTQVLLQKKGLTLNPITSLYYIAPCSFVFLFVPWYLLEKPMME----VSQIQFNF 228 (380)
Q Consensus 155 --~~~~~~G~~l~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~----~~~~~~~~ 228 (380)
.+..+.|....++++++.++..++.++++|+.. .+.+........++.++.+...+..|+.... ..+|....
T Consensus 176 ~~~~n~~~G~~avl~~c~~SgfAgvYfEkiLK~s~--~s~wi~NiqL~~~g~~f~~l~~~~~d~~~i~~~gff~G~s~~v 253 (345)
T KOG2234|consen 176 SSAQNPFLGLVAVLVACFLSGFAGVYFEKILKGSN--VSLWIRNIQLYFFGILFNLLTILLQDGEAINEYGFFYGYSSIV 253 (345)
T ss_pred CcccchhhhHHHHHHHHHHHHHHHHHHHHHHhcCC--chHHHHHHHHHHHHHHHHHHHHhhccccccccCCccccccHHH
Confidence 233579999999999999999999999998754 3444444444556665555555444443331 23455555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcchhHHHHhhhhhhHHHHHHHHHhcCCCCcchhhhHHHHHHHHHHHHHHHhhh
Q 016904 229 WIFFSNALCALALNFSIFLVIGRTGAVTIRVAGVLKDWILIALSTVIFPESTITGLNIIGYAIALCGVVMYNYIKV 304 (380)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~i~~~~a~~~s~~~~l~~v~~~~~~~l~~~~~~~~~~~~~G~~lii~g~~~~~~~~~ 304 (380)
|.+++.-..+. .+.-..+|+.+-..-+....+..+++.+.++.+| |.++|....+|..+++.++.+|...++
T Consensus 254 w~vVl~~a~gG---Llvs~v~KyADnIlK~f~~s~aiilt~v~S~~Lf-~~~~t~~F~lG~~lVi~Si~lY~~~P~ 325 (345)
T KOG2234|consen 254 WLVVLLNAVGG---LLVSLVMKYADNILKGFSTSVAIILTTVASIALF-DFQLTLYFLLGALLVILSIFLYSLYPA 325 (345)
T ss_pred HHHHHHHhccc---hhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHc-cCCchHHHHHHHHHHHHHHHHhhcCCc
Confidence 65544322222 1233468999999999999999999999999999 888999999999999999999985443
No 29
>KOG3912 consensus Predicted integral membrane protein [General function prediction only]
Probab=99.78 E-value=6.4e-17 Score=140.78 Aligned_cols=280 Identities=16% Similarity=0.170 Sum_probs=208.3
Q ss_pred HHHHHHHHHHHHHHHHHhcCC--C-cCCCcHHHHHHHHHHHHHHHHHHHHHHhhccCCC-------------cccHHhhh
Q 016904 17 LIYILLSSGVILYNKWVLSPK--Y-FNFPFPITLTMIHMGFSGVVAFFLVRVFKVVSPV-------------KMTFEIYA 80 (380)
Q Consensus 17 ~~~~~~~~~~~~~~k~~l~~~--~-~~~~~p~~~~~~r~~~~~~~l~~~~~~~~~~~~~-------------~~~~~~~~ 80 (380)
++....++..++..||.=+.+ + .+|..|+..+...|+=-+++++.+...+++.+.+ +.+.+.
T Consensus 9 ~imvvsGs~Ntl~aKwadsi~~eg~pgfqhpvlqal~mFlGEflCl~vf~lir~~sn~~g~~s~~~~ilsq~~~pf~p-- 86 (372)
T KOG3912|consen 9 LIMVVSGSFNTLVAKWADSIQAEGSPGFQHPVLQALLMFLGEFLCLAVFKLIRLRSNGQGVSSDLDSILSQDSSPFNP-- 86 (372)
T ss_pred hhhhhhccHHHHHHHHHHhhhhhCCCccccHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccccccccccCCCCc--
Confidence 344466777888889985433 2 3477798888877774445555544333222111 123332
Q ss_pred HHhhhHHHHHHHHHHHHhhhhhcccHhHHHHHHHHHHHHHHHHHHHhccccccHhHHHHHHHHHhhhheeeeccc-----
Q 016904 81 TCVVPISAFFASSLWFGNTAYLHISVAFIQMLKALMPVATFFMAVLCGTDKARLDVFLNMVLVSVGVVISSYGEI----- 155 (380)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~al~~~~~~~~~il~~~~pi~v~ll~~~~l~ek~~~~~~~~v~l~~~Gv~l~~~~~~----- 155 (380)
..+++.+++...+..+.|.|+.+++++..++++....+|+.+++.-+++++++.++|+++....+|++++...|.
T Consensus 87 ~lfl~Pal~Di~gsslm~vgL~lTsASsfQMlRGaviIFvglfst~~Ln~ti~~~qWl~i~fv~lGlviVg~~d~~~~~~ 166 (372)
T KOG3912|consen 87 VLFLPPALCDIAGSSLMYVGLNLTSASSFQMLRGAVIIFVGLFSTMFLNRTITGRQWLGILFVSLGLVIVGSLDVHLVTD 166 (372)
T ss_pred ceecChHHHHHhhhHHHHHHHHHhhHHHHHHhhcchhhhhHHHHHHHHhcccchhhHHHHHHHHhhhheeeeeecccccC
Confidence 456778999999999999999999999999999999999999999999999999999999999999998876531
Q ss_pred -----eehHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHHHHHhhc----CCccc------
Q 016904 156 -----HFNIVGTLYQVTGIVAEALRLVLTQVLLQKKGLTLNPITSLYYIAPCSFVFLFVPWYLLE----KPMME------ 220 (380)
Q Consensus 156 -----~~~~~G~~l~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~----~~~~~------ 220 (380)
+.-..|+++.+.+-+.-|.++++.+|.+++. +++|.....|..+++.+++...+..+. +....
T Consensus 167 p~~d~s~iitGdllIiiaqiivaiQ~v~Eek~l~~~--nV~pl~avg~eGlfG~v~~slL~i~m~yi~~~~sfS~~~~g~ 244 (372)
T KOG3912|consen 167 PYTDYSSIITGDLLIIIAQIIVAIQMVCEEKQLKKS--NVAPLQAVGWEGLFGLVILSLLAIPMYYIPSGDSFSCNPRGV 244 (372)
T ss_pred CccccccchhhhHHHHHHHHHHHHHHHHHHhhhhhc--cCCHHHHhhhhhhHHHHHHHHHHHHHhheecCCcCcCCCCcc
Confidence 2336899999999999999999999998874 589999999999999666544333221 11111
Q ss_pred cccchhhH--------HHHHHHHHHH--HHHHHHHHHHHhhcchhHHHHhhhhhhHHHHHHHHHhcCCCCcchhhhHHHH
Q 016904 221 VSQIQFNF--------WIFFSNALCA--LALNFSIFLVIGRTGAVTIRVAGVLKDWILIALSTVIFPESTITGLNIIGYA 290 (380)
Q Consensus 221 ~~~~~~~~--------~~~~~~~~~~--~~~~~~~~~~i~~~~a~~~s~~~~l~~v~~~~~~~l~~~~~~~~~~~~~G~~ 290 (380)
...|...+ ..+...+... ...|+......|..++++-.++..++..+.++++..+. .|.+...|+.|.+
T Consensus 245 ~eD~~~~~~~~~e~p~l~val~~~~vSiAffNfaGlsitk~~SattRmllD~lRt~~IWv~si~m~-~E~f~llqilGFl 323 (372)
T KOG3912|consen 245 LEDWGDAFAALQESPSLAVALIGFTVSIAFFNFAGLSITKELSATTRMLLDSLRTYVIWVFSIAMG-WEYFHLLQILGFL 323 (372)
T ss_pred hhhHHHHHHHhcCCchhHHHHhhhhhheeeeeehhhHHHHHhhHHHHHHHHhhhhhhhhHhHHHHH-HHHHHHHHHHHHH
Confidence 11111110 1112222221 22456666778999999999999999999999999999 6669999999999
Q ss_pred HHHHHHHHHHH
Q 016904 291 IALCGVVMYNY 301 (380)
Q Consensus 291 lii~g~~~~~~ 301 (380)
+.+.|+.+|+-
T Consensus 324 iLi~Gi~lY~~ 334 (372)
T KOG3912|consen 324 ILIMGIILYNQ 334 (372)
T ss_pred HHHHHHHHHHH
Confidence 99999999984
No 30
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=99.74 E-value=6.1e-16 Score=138.52 Aligned_cols=211 Identities=13% Similarity=0.122 Sum_probs=162.4
Q ss_pred cHHhhhHHhhhHHHHHHHHHHHHhhhhhcccHhHHHHHHHHHHHHHHHHHHHhccccccHhHHHHHHHHHhhhheeeecc
Q 016904 75 TFEIYATCVVPISAFFASSLWFGNTAYLHISVAFIQMLKALMPVATFFMAVLCGTDKARLDVFLNMVLVSVGVVISSYGE 154 (380)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~il~~~~pi~v~ll~~~~l~ek~~~~~~~~v~l~~~Gv~l~~~~~ 154 (380)
.+|+. .+....+++|...+.+.+.++++++++.++++.++..+++++++++++|+|++++||.++.+.++|++++..++
T Consensus 13 ~~~~~-~~~~vPA~lY~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~qW~aL~lL~~Gv~lv~~~~ 91 (244)
T PF04142_consen 13 SPKDT-LKLAVPALLYAIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRRQWLALFLLVAGVVLVQLSS 91 (244)
T ss_pred hHHHH-HHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHheeecCC
Confidence 35563 44555688999999999999999999999999999999999999999999999999999999999999976532
Q ss_pred c-----------------eehHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 016904 155 I-----------------HFNIVGTLYQVTGIVAEALRLVLTQVLLQKKGLTLNPITSLYYIAPCSFVFLFVPWYLLEKP 217 (380)
Q Consensus 155 ~-----------------~~~~~G~~l~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~ 217 (380)
. .....|+++.++++++.++..|+.+|++|+++ .+..........++.++.++.....+..
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~G~~~vl~~~~~S~~agVy~E~~lK~~~--~s~~~~N~qL~~~gi~~~~~~~~~~~~~ 169 (244)
T PF04142_consen 92 SQSSDNSSSSSVHHDASNQNPLLGLLAVLAAAFLSGFAGVYFEKLLKRSN--VSLWIQNMQLYLFGILFNLLALLLSDGS 169 (244)
T ss_pred ccccccccccccccccccchhHhHHHHHHHHHHHHHHHHHHHHHHhcccc--hhHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 1 11358999999999999999999999999864 3445555555666666666555444432
Q ss_pred ccc----cccchhhHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHhhhhhhHHHHHHHHHhcCCCCcchhhhHHHHHH
Q 016904 218 MME----VSQIQFNFWIFFSNALCALALNFSIFLVIGRTGAVTIRVAGVLKDWILIALSTVIFPESTITGLNIIGYAIA 292 (380)
Q Consensus 218 ~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~a~~~s~~~~l~~v~~~~~~~l~~~~~~~~~~~~~G~~li 292 (380)
... ..++....|.++.. ........-..+|+.+...-+....+..+++.+.++++| +.+++....+|..++
T Consensus 170 ~~~~~g~f~G~~~~~~~~i~~---~a~gGllva~v~KyadnI~K~fa~a~siv~t~~~s~~lf-~~~~s~~f~lg~~~V 244 (244)
T PF04142_consen 170 AISESGFFHGYSWWVWIVIFL---QAIGGLLVAFVLKYADNIVKGFATAVSIVLTAVLSVLLF-GFPPSLSFLLGAALV 244 (244)
T ss_pred ccccCCchhhcchHHHHHHHH---HHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHhhheecC
Confidence 222 12333334443321 111223344579999999999999999999999999999 778999999998753
No 31
>KOG2766 consensus Predicted membrane protein [Function unknown]
Probab=99.72 E-value=2.4e-18 Score=147.73 Aligned_cols=278 Identities=14% Similarity=0.189 Sum_probs=205.8
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCcHHHHHHHHHHHHHHHHHHHHHHhhccCCCcccHHhhhHHhhh
Q 016904 6 NKPLVLTYLYLLIYILLSSGVILYNKWVLSPKYFNFPFPITLTMIHMGFSGVVAFFLVRVFKVVSPVKMTFEIYATCVVP 85 (380)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~k~~l~~~~~~~~~p~~~~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (380)
.|+.+....+--+-..+..+..+.+.++..| +.+-|...+|+-+..-+++--++..+ |+ +-.+..| ++.++
T Consensus 13 tkk~li~~~LGQiLSL~~t~~a~tss~la~k---~iN~Pt~QtFl~Y~LLalVY~~~~~f-R~-~~~~~~~----~hYil 83 (336)
T KOG2766|consen 13 TKKTLIGLGLGQILSLLITSTAFTSSELARK---GINAPTSQTFLNYVLLALVYGPIMLF-RR-KYIKAKW----RHYIL 83 (336)
T ss_pred chhhhheeeHHHHHHHHHHcchhhhHHHHhc---cCCCccHHHHHHHHHHHHHHhhHHHh-hh-HHHHHHH----HHhhh
Confidence 3444443333333334444455566666662 36668888888887666665555543 22 2333334 33466
Q ss_pred HHHHHHHHHHHHhhhhhcccHhHHHHHHHHHHHHHHHHHHHhccccccHhHHHHHHHHHhhhheeeecc--------cee
Q 016904 86 ISAFFASSLWFGNTAYLHISVAFIQMLKALMPVATFFMAVLCGTDKARLDVFLNMVLVSVGVVISSYGE--------IHF 157 (380)
Q Consensus 86 ~~~~~~~~~~~~~~al~~~~~~~~~il~~~~pi~v~ll~~~~l~ek~~~~~~~~v~l~~~Gv~l~~~~~--------~~~ 157 (380)
.++...-++++-..|.||++....+.+.+-..+-+.+++|+++|.|.++.++.|+.++.+|+++++..| ...
T Consensus 84 la~~DVEaNy~vV~AyQyTsmtSi~lLDcwaip~v~~lsw~fLktrYrlmki~gV~iCi~GvvmvV~sDV~agd~aggsn 163 (336)
T KOG2766|consen 84 LAFVDVEANYFVVKAYQYTSMTSIMLLDCWAIPCVLVLSWFFLKTRYRLMKISGVVICIVGVVMVVFSDVHAGDRAGGSN 163 (336)
T ss_pred eeEEeecccEEEeeehhhcchHHHHHHHHhhhHHHHHHHHHHHHHHHhhheeeeEEeEecceEEEEEeeeccccccCCCC
Confidence 677777778888899999999999999999999999999999999999999999999999999988765 233
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHHHHHhhcCCccccccchhhHHHHHHHHHH
Q 016904 158 NIVGTLYQVTGIVAEALRLVLTQVLLQKKGLTLNPITSLYYIAPCSFVFLFVPWYLLEKPMMEVSQIQFNFWIFFSNALC 237 (380)
Q Consensus 158 ~~~G~~l~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (380)
...|++++++++-+||..++..+-+.|+ .+..+++...+++|+++..+- +..|........|.+.....+...++
T Consensus 164 p~~GD~lvi~GATlYaVSNv~EEflvkn----~d~~elm~~lgLfGaIIsaIQ-~i~~~~~~~tl~w~~~i~~yl~f~L~ 238 (336)
T KOG2766|consen 164 PVKGDFLVIAGATLYAVSNVSEEFLVKN----ADRVELMGFLGLFGAIISAIQ-FIFERHHVSTLHWDSAIFLYLRFALT 238 (336)
T ss_pred CccCcEEEEecceeeeeccccHHHHHhc----CcHHHHHHHHHHHHHHHHHHH-HhhhccceeeEeehHHHHHHHHHHHH
Confidence 4689999999999999999999998777 689999999999999998877 44565555444554433333333444
Q ss_pred HHHHHHHHHHHHhhcchhHHHHhhhhhhHHHHHHHHHhcCCCCcchhhhHHHHHHHHHHHHHH
Q 016904 238 ALALNFSIFLVIGRTGAVTIRVAGVLKDWILIALSTVIFPESTITGLNIIGYAIALCGVVMYN 300 (380)
Q Consensus 238 ~~~~~~~~~~~i~~~~a~~~s~~~~l~~v~~~~~~~l~~~~~~~~~~~~~G~~lii~g~~~~~ 300 (380)
-+..+-..-.++|..+++...+--.....+++++ -.| +.+++|...+..+.+..|..+|.
T Consensus 239 MFllYsl~pil~k~~~aT~~nlslLTsDmwsl~i--~~F-gYhv~wLY~laF~~i~~GliiYs 298 (336)
T KOG2766|consen 239 MFLLYSLAPILIKTNSATMFNLSLLTSDMWSLLI--RTF-GYHVDWLYFLAFATIATGLIIYS 298 (336)
T ss_pred HHHHHHhhHHheecCCceEEEhhHhHHHHHHHHH--HHH-hcchhhhhHHHHHHHHHhhEEee
Confidence 4444444445788889988888778888888888 566 55699999999999999999984
No 32
>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]
Probab=99.65 E-value=1.3e-15 Score=132.52 Aligned_cols=251 Identities=14% Similarity=0.213 Sum_probs=190.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCCCcccHHhhhHHhhhHHHHHHHHHHHHhhhhhc-ccHhHHHHHHHHHHHHHHHH
Q 016904 45 ITLTMIHMGFSGVVAFFLVRVFKVVSPVKMTFEIYATCVVPISAFFASSLWFGNTAYLH-ISVAFIQMLKALMPVATFFM 123 (380)
Q Consensus 45 ~~~~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~-~~~~~~~il~~~~pi~v~ll 123 (380)
..+++.||++-+.--+++..-... .+++.+.|+|.+ ....+...+.+.|+++++ +|.+.-.++++..++.++.+
T Consensus 34 NLITFaqFlFia~eGlif~skf~~-~k~kiplk~Y~i----~V~mFF~vnv~NN~al~f~I~~PlHiIfRsgsll~nM~~ 108 (330)
T KOG1583|consen 34 NLITFAQFLFIATEGLIFTSKFFT-VKPKIPLKDYAI----TVAMFFIVNVTNNYALKFNIPMPLHIIFRSGSLLANMIL 108 (330)
T ss_pred eehHHHHHHHHHHhceeeeccccc-cCCCCchhhhhe----ehheeeeeeeeccceeeecccceEEEEEecCcHHHHHHH
Confidence 578999998755544433321122 236778877643 334466677889999987 89999999999999999999
Q ss_pred HHHhccccccHhHHHHHHHHHhhhheeeec---cce------------eh----HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016904 124 AVLCGTDKARLDVFLNMVLVSVGVVISSYG---EIH------------FN----IVGTLYQVTGIVAEALRLVLTQVLLQ 184 (380)
Q Consensus 124 ~~~~l~ek~~~~~~~~v~l~~~Gv~l~~~~---~~~------------~~----~~G~~l~l~s~~~~a~~~v~~~~~~~ 184 (380)
+++++|+|++.+|+.++.+..+|+++.... |.. .+ ..|+.+...+.+..|.-.+++++..|
T Consensus 109 g~il~~k~Ys~~Qy~Sv~~iTiGiiIcTl~s~~d~~~~~~~l~~~~~~~~~~~w~iGi~lL~~al~~sa~mgiyqE~~Y~ 188 (330)
T KOG1583|consen 109 GWILLGKRYSLRQYSSVLMITIGIIICTLFSSKDGRSKLSGLDSGSAQSDFFWWLIGIALLVFALLLSAYMGIYQETTYQ 188 (330)
T ss_pred HHHhccceeehhhhhhHHhhhhhheeEEeecCcchhhhhcccccCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999986652 111 01 27999999999999999999999999
Q ss_pred hCCCCCCHHHHHHHHHHHHHHHHHHHHH--------hhcCCccc----cccchhhHHHHHHHHHHHHHHHHHHHHHHhhc
Q 016904 185 KKGLTLNPITSLYYIAPCSFVFLFVPWY--------LLEKPMME----VSQIQFNFWIFFSNALCALALNFSIFLVIGRT 252 (380)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~i~l~~~~~--------~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 252 (380)
+++ -++-+.++|.........+...- ....+... ....+..++.++.+.+..+.+.-..+.+..++
T Consensus 189 kyG--Kh~~EalFytH~LsLP~Flf~~~div~~~~~~~~se~~~~p~~g~~vP~~~~yLl~n~L~Qy~CikgVy~L~te~ 266 (330)
T KOG1583|consen 189 KYG--KHWKEALFYTHFLSLPLFLFMGDDIVSHWRLAFKSESYLIPLLGFKVPSMWVYLLFNVLTQYFCIKGVYILTTET 266 (330)
T ss_pred Hhc--CChHHHHHHHHHhccchHHHhcchHHHHHHHHhcCcceeccccCccccHHHHHHHHHHHHHHHHHHhhhhhhcee
Confidence 865 47899999998877544332210 00000000 01123445667777888887766677788899
Q ss_pred chhHHHHhhhhhhHHHHHHHHHhcCCCCcchhhhHHHHHHHHHHHHHHHhh
Q 016904 253 GAVTIRVAGVLKDWILIALSTVIFPESTITGLNIIGYAIALCGVVMYNYIK 303 (380)
Q Consensus 253 ~a~~~s~~~~l~~v~~~~~~~l~~~~~~~~~~~~~G~~lii~g~~~~~~~~ 303 (380)
++.+++++-.+++.+..+++.+.| |.++++..|+|..+++.|.++|.-..
T Consensus 267 ~sLTVTlvltlRKFvSLl~SiiyF-~Npft~~h~lGa~lVF~Gt~~fa~~~ 316 (330)
T KOG1583|consen 267 SSLTVTLVLTLRKFVSLLFSIIYF-ENPFTPWHWLGAALVFFGTLLFANVW 316 (330)
T ss_pred cceEEEEeeeHHHHHHHhheeeEe-cCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999 88899999999999999999987543
No 33
>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins. O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.
Probab=99.64 E-value=7e-15 Score=123.03 Aligned_cols=140 Identities=36% Similarity=0.557 Sum_probs=122.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhC---CCCCCHHHHHHHHHHHHHHHHHHHHHhhcCCccccc-----c-----chhh
Q 016904 161 GTLYQVTGIVAEALRLVLTQVLLQKK---GLTLNPITSLYYIAPCSFVFLFVPWYLLEKPMMEVS-----Q-----IQFN 227 (380)
Q Consensus 161 G~~l~l~s~~~~a~~~v~~~~~~~~~---~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~-----~-----~~~~ 227 (380)
|.+++++|.++.|+++++.|+.++++ +.+.++.+++.|.++.+.+.++|.....|++..... . ....
T Consensus 1 G~~~~l~s~~~~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~ 80 (153)
T PF03151_consen 1 GFILALASSLFSALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFIILLPLAFLLEGPQLSSFFSEIFGEELSSDPNF 80 (153)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhhhcchHHH
Confidence 78899999999999999999998873 356899999999999999999999988887653211 1 2234
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHhhhhhhHHHHHHHHHhcCCCCcchhhhHHHHHHHHHHHHHHH
Q 016904 228 FWIFFSNALCALALNFSIFLVIGRTGAVTIRVAGVLKDWILIALSTVIFPESTITGLNIIGYAIALCGVVMYNY 301 (380)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~i~~~~a~~~s~~~~l~~v~~~~~~~l~~~~~~~~~~~~~G~~lii~g~~~~~~ 301 (380)
+..++.++++++..++..++++++++|.+.++.+.++.+..++.|+++| +|++++.+++|.++.++|.++|+|
T Consensus 81 ~~~~~~~~~~~~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f-~~~~t~~~~~G~~l~~~G~~~Ysy 153 (153)
T PF03151_consen 81 IFLLILSGLLAFLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFF-GEPITPLQIIGIVLALVGVLLYSY 153 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhc-CCcCCHHHHHHHHHHHHHHheeeC
Confidence 5567788999999999999999999999999999999999999999999 566999999999999999999864
No 34
>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]
Probab=99.41 E-value=8.9e-13 Score=109.43 Aligned_cols=226 Identities=17% Similarity=0.188 Sum_probs=166.2
Q ss_pred ccHHhhhHHhhhHHHHHHHHHHHHhhhhhcccHhHHHHHHHHHHHHHHHHHHHhccccccHhHHHHHHHHHhhhheeeec
Q 016904 74 MTFEIYATCVVPISAFFASSLWFGNTAYLHISVAFIQMLKALMPVATFFMAVLCGTDKARLDVFLNMVLVSVGVVISSYG 153 (380)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~il~~~~pi~v~ll~~~~l~ek~~~~~~~~v~l~~~Gv~l~~~~ 153 (380)
...|.++++..|.++++.+.++.+..+++.++++.++.+.++.-.|+.+++++++|+|+...++++++++..|++++.+.
T Consensus 47 ~nik~~~~~taPF~i~Wt~aNY~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~D~~~~~kIlaailAI~GiVmiay~ 126 (290)
T KOG4314|consen 47 FNIKLFFIRTAPFSIFWTGANYLYLLALKKISASDASAIFACNAAFVFILAIIVLGDRFMGFKILAAILAIGGIVMIAYA 126 (290)
T ss_pred ceeeeeeeeecceEEEEecCCcHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHhccchhhhhHHHHHHHhCcEEEEEec
Confidence 34445567778888899999999999999999999999999999999999999999999999999999999999999986
Q ss_pred c--ceehHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHHHH-HHHHHh--hcCCccccccchhhH
Q 016904 154 E--IHFNIVGTLYQVTGIVAEALRLVLTQVLLQKKGLTLNPITSLYYIAPCSFVFL-FVPWYL--LEKPMMEVSQIQFNF 228 (380)
Q Consensus 154 ~--~~~~~~G~~l~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l-~~~~~~--~~~~~~~~~~~~~~~ 228 (380)
| +...+.|+..+++|+...|+|-|..|+...+.... +....+.....+..++. +|+... .....+ .......
T Consensus 127 DN~~a~e~iGi~~AV~SA~~aAlYKV~FK~~iGnAn~G-daa~FmS~LGF~NL~~~~~~~lIL~~T~VE~~--qsFA~~P 203 (290)
T KOG4314|consen 127 DNEHADEIIGIACAVGSAFMAALYKVLFKMFIGNANFG-DAAHFMSCLGFFNLCFISFPALILAFTGVEHL--QSFAAAP 203 (290)
T ss_pred cchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccCcch-hHHHHHHHHHHHHHHHHhhhHHHHHHhchHHH--HHHhhCC
Confidence 5 45679999999999999999999999987764322 22222222233332222 222211 111111 1111122
Q ss_pred HH-HHHHHHHHHHHHHHHHHHHhhcchhHHHHhhhhhhHHHHHHHHHhcCCCCcchhhhHHHHHHHHHHHHHHHhh
Q 016904 229 WI-FFSNALCALALNFSIFLVIGRTGAVTIRVAGVLKDWILIALSTVIFPESTITGLNIIGYAIALCGVVMYNYIK 303 (380)
Q Consensus 229 ~~-~~~~~~~~~~~~~~~~~~i~~~~a~~~s~~~~l~~v~~~~~~~l~~~~~~~~~~~~~G~~lii~g~~~~~~~~ 303 (380)
|. +...+.+....++.....+..+.|...|+-..+..........++- |-+++...++|..+|+.|..+.....
T Consensus 204 WG~l~G~A~L~lAFN~~iN~GiaL~~PilISiG~l~~iP~NaaiDiL~q-~l~~ntl~La~T~iI~i~FiLiiiP~ 278 (290)
T KOG4314|consen 204 WGCLCGAAGLSLAFNFLINFGIALLNPILISIGMLCGIPGNAAIDILFQ-ELEFNTLFLAATCIICIGFILIIIPE 278 (290)
T ss_pred chhhhhHHHHHHHHhhheeehhhhhchhhheehheecCcchhHHHHHHH-HHHHHHHHHHHHHHHHHhHHheeccc
Confidence 32 2223344445566666678889998888877777777777777776 76799999999999999998866544
No 35
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown. Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane
Probab=99.39 E-value=2.1e-12 Score=103.83 Aligned_cols=120 Identities=17% Similarity=0.265 Sum_probs=97.7
Q ss_pred HHHHHHHHHhcCCCcCCCcHHHHHHHHHHHHHHHHHHHHHHhhccCCCcccHHhhhHHhhhHHHH-HHHHHHHHhhhhhc
Q 016904 25 GVILYNKWVLSPKYFNFPFPITLTMIHMGFSGVVAFFLVRVFKVVSPVKMTFEIYATCVVPISAF-FASSLWFGNTAYLH 103 (380)
Q Consensus 25 ~~~~~~k~~l~~~~~~~~~p~~~~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~al~~ 103 (380)
.....+|...+ +++ |...+++|+.++.+ +..+....++.+..+.+++++ ...+..+.+ ....+.++++++++
T Consensus 5 ~~~~~~k~~~~----~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~ 77 (126)
T PF00892_consen 5 IYSVFSKKLLK----KIS-PLSITFWRFLIAGI-LLILLLILGRKPFKNLSPRQW-LWLLFLGLLGTALAYLLYFYALKY 77 (126)
T ss_pred eHHHHHHHHhc----cCC-HHHHHHHHHHHHHH-HHHHHHhhccccccCCChhhh-hhhhHhhccceehHHHHHHHHHHh
Confidence 34567899999 788 99999999999987 555554444433355566664 444444554 68899999999999
Q ss_pred ccHhHHHHHHHHHHHHHHHHHHHhccccccHhHHHHHHHHHhhhheee
Q 016904 104 ISVAFIQMLKALMPVATFFMAVLCGTDKARLDVFLNMVLVSVGVVISS 151 (380)
Q Consensus 104 ~~~~~~~il~~~~pi~v~ll~~~~l~ek~~~~~~~~v~l~~~Gv~l~~ 151 (380)
++++.++++.++.|+++.+++++++||++++++++|++++++|++++.
T Consensus 78 ~~~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~~~~g~~l~~~g~~l~~ 125 (126)
T PF00892_consen 78 ISASIVSILQYLSPVFAAILGWLFLGERPSWRQIIGIILIIIGVVLIS 125 (126)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999998753
No 36
>COG2510 Predicted membrane protein [Function unknown]
Probab=99.30 E-value=3.7e-11 Score=92.97 Aligned_cols=126 Identities=13% Similarity=0.081 Sum_probs=106.5
Q ss_pred HHHHHHHHHHHHHhcCCCcCCCcHHHHHHHHHHHHHHHHHHHHHHhhccCCC-cccHHhhhHHhhhHHHHHHHHHHHHhh
Q 016904 21 LLSSGVILYNKWVLSPKYFNFPFPITLTMIHMGFSGVVAFFLVRVFKVVSPV-KMTFEIYATCVVPISAFFASSLWFGNT 99 (380)
Q Consensus 21 ~~~~~~~~~~k~~l~~~~~~~~~p~~~~~~r~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (380)
+++..-.++.|..++ +.+ |.+-++.|..+..+++..+....++.+.. ..+.|. +..+...|+..+.+..+++.
T Consensus 13 ~fa~L~~iF~KIGl~----~vd-p~~At~IRtiVi~~~l~~v~~~~g~~~~~~~~~~k~-~lflilSGla~glswl~Yf~ 86 (140)
T COG2510 13 LFAGLTPIFAKIGLE----GVD-PDFATTIRTIVILIFLLIVLLVTGNWQAGGEIGPKS-WLFLILSGLAGGLSWLLYFR 86 (140)
T ss_pred HHHHHHHHHHHHhcc----ccC-ccHHHHHHHHHHHHHHHHHHHhcCceecccccCcce-ehhhhHHHHHHHHHHHHHHH
Confidence 334444668899999 888 99999999999988888877666654433 245555 56677778888889999999
Q ss_pred hhhcccHhHHHHHHHHHHHHHHHHHHHhccccccHhHHHHHHHHHhhhheeee
Q 016904 100 AYLHISVAFIQMLKALMPVATFFMAVLCGTDKARLDVFLNMVLVSVGVVISSY 152 (380)
Q Consensus 100 al~~~~~~~~~il~~~~pi~v~ll~~~~l~ek~~~~~~~~v~l~~~Gv~l~~~ 152 (380)
|++--.++...-+..+.|+++.+++++++|||++..+|+|++++.+|++++..
T Consensus 87 ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~~~iG~~LI~~Gailvs~ 139 (140)
T COG2510 87 ALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLPTWIGIVLIVIGAILVSL 139 (140)
T ss_pred HHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHHHHHHHHHHHhCeeeEec
Confidence 99999999999999999999999999999999999999999999999988763
No 37
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=99.18 E-value=2.5e-10 Score=101.53 Aligned_cols=190 Identities=14% Similarity=0.146 Sum_probs=127.3
Q ss_pred ccHhHHHHHHHHHHHHHHHHHHHhccccccHhHHHHHHHHHhhhheeeec--------------------cc-------e
Q 016904 104 ISVAFIQMLKALMPVATFFMAVLCGTDKARLDVFLNMVLVSVGVVISSYG--------------------EI-------H 156 (380)
Q Consensus 104 ~~~~~~~il~~~~pi~v~ll~~~~l~ek~~~~~~~~v~l~~~Gv~l~~~~--------------------~~-------~ 156 (380)
++++.....++..++++++..+.+.+||++..++++..+...|++..... +. .
T Consensus 2 isvPa~~~~~s~~l~~v~l~~~~~~~~~~~~~~i~~~~l~~~g~l~~~ls~~q~~al~~l~~~~~~~~~~~~~~~~~~~g 81 (222)
T TIGR00803 2 LSVPIHIIFKQNNLVLIALGNLLAAGKQVTQLKILSTALMTLGSLVASLGDDQWFSLKLLKLGVAIVQMVQSSAKTLMFG 81 (222)
T ss_pred ccccchHHHHhcchHHHHHhcccccceeeehHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHhHeeeecCCCCccccccc
Confidence 45667788888999999999999989998899999988888887742221 10 2
Q ss_pred ehHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHHHHHhhcCCccc----cccchhhHHHHH
Q 016904 157 FNIVGTLYQVTGIVAEALRLVLTQVLLQKKGLTLNPITSLYYIAPCSFVFLFVPWYLLEKPMME----VSQIQFNFWIFF 232 (380)
Q Consensus 157 ~~~~G~~l~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~----~~~~~~~~~~~~ 232 (380)
..+.|....+.++++.++..+++++..|+++ ...........+++.+.........+..... ...++...|.++
T Consensus 82 ~~~~g~~~~l~a~~~~~~~~~y~e~~~k~~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (222)
T TIGR00803 82 NPVVGLSAVLSALLSSGFAGVYFEKILKDGD--TMFWSRNLQLPLFGLFSTFSVLLWSDGTLISNFGFFIGYPTAVWIVG 159 (222)
T ss_pred cHHHHHHHHHHHHHHHhhhHHHHHHcccCCC--CchHHHHHHHHHHHHHHHHHHHhhcccchhhccCcccCCchHHHHHH
Confidence 3467888888888999999999999866532 1111111222222222111111111111110 112223334333
Q ss_pred HHHHHHHHHHHHHHHHHhhcchhHHHHhhhhhhHHHHHHHHHhcCCCCcchhhhHHHHHHHHHHHHH
Q 016904 233 SNALCALALNFSIFLVIGRTGAVTIRVAGVLKDWILIALSTVIFPESTITGLNIIGYAIALCGVVMY 299 (380)
Q Consensus 233 ~~~~~~~~~~~~~~~~i~~~~a~~~s~~~~l~~v~~~~~~~l~~~~~~~~~~~~~G~~lii~g~~~~ 299 (380)
+ .....+.+..+.+++.++.+.++...++++++.++++++| +++++..+++|..+++.|+.+|
T Consensus 160 ~---~~a~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f-~~~ls~~~~~g~~lV~~~~~lY 222 (222)
T TIGR00803 160 L---LNVGGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLF-DAKISSTFYLGAILVFLATFLY 222 (222)
T ss_pred H---HHHhcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHh-cCCccHHHHHHHHHHHeeeEeC
Confidence 2 2333344567789999999999999999999999999999 7789999999999999987764
No 38
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown. Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane
Probab=99.17 E-value=2.6e-10 Score=91.48 Aligned_cols=125 Identities=17% Similarity=0.258 Sum_probs=96.8
Q ss_pred HHHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHHHHHhhcCCccccccchhhHHHHHHHHHHHHHHHHHHHHHH
Q 016904 170 VAEALRLVLTQVLLQKKGLTLNPITSLYYIAPCSFVFLFVPWYLLEKPMMEVSQIQFNFWIFFSNALCALALNFSIFLVI 249 (380)
Q Consensus 170 ~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 249 (380)
++||.+.++.|+..++ .|+.....+....+.+ +++.....+.............+.+..+.+.....+.+++.++
T Consensus 1 ~~~a~~~~~~k~~~~~----~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 75 (126)
T PF00892_consen 1 FSWAIYSVFSKKLLKK----ISPLSITFWRFLIAGI-LLILLLILGRKPFKNLSPRQWLWLLFLGLLGTALAYLLYFYAL 75 (126)
T ss_pred ceeeeHHHHHHHHhcc----CCHHHHHHHHHHHHHH-HHHHHHhhccccccCCChhhhhhhhHhhccceehHHHHHHHHH
Confidence 4688899999998776 6999999999999887 5555554443322112222223344444444566777788999
Q ss_pred hhcchhHHHHhhhhhhHHHHHHHHHhcCCCCcchhhhHHHHHHHHHHHHHH
Q 016904 250 GRTGAVTIRVAGVLKDWILIALSTVIFPESTITGLNIIGYAIALCGVVMYN 300 (380)
Q Consensus 250 ~~~~a~~~s~~~~l~~v~~~~~~~l~~~~~~~~~~~~~G~~lii~g~~~~~ 300 (380)
++.++...+.+.+++|+++.+++++++ +|++++.+++|+++++.|+++..
T Consensus 76 ~~~~~~~~~~~~~~~pv~~~i~~~~~~-~e~~~~~~~~g~~l~~~g~~l~~ 125 (126)
T PF00892_consen 76 KYISASIVSILQYLSPVFAAILGWLFL-GERPSWRQIIGIILIIIGVVLIS 125 (126)
T ss_pred HhcchhHHHHHHHHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999 77799999999999999998754
No 39
>PF13536 EmrE: Multidrug resistance efflux transporter
Probab=99.17 E-value=1.6e-10 Score=91.30 Aligned_cols=106 Identities=11% Similarity=0.161 Sum_probs=81.6
Q ss_pred HHHHHHHHHHHHHHHHHhhccCCC--cccHHhhhHHhhhHHHHH-HHHHHHHhhhhhcccHhHHHHHHHHHHHHHHHHHH
Q 016904 49 MIHMGFSGVVAFFLVRVFKVVSPV--KMTFEIYATCVVPISAFF-ASSLWFGNTAYLHISVAFIQMLKALMPVATFFMAV 125 (380)
Q Consensus 49 ~~r~~~~~~~l~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~-~~~~~~~~~al~~~~~~~~~il~~~~pi~v~ll~~ 125 (380)
.+|+.++.+++..+....++.+.. ....++ +...+..++.. ...+.++++|+++.| +.+..+.++.|++++++++
T Consensus 2 a~r~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~a~~~~~-~~v~~i~~~~pi~~~ll~~ 79 (113)
T PF13536_consen 2 AFRYLFSVLFLLIILLIRGRLRDLFRALRRKP-WLWLILAGLLGFGVAYLLFFYALSYAP-ALVAAIFSLSPIFTALLSW 79 (113)
T ss_pred HHHHHHHHHHHHHHHHHHccHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHH
Confidence 478888888877776553332211 112233 23344445554 478899999999999 5888999999999999999
Q ss_pred HhccccccHhHHHHHHHHHhhhheeeeccce
Q 016904 126 LCGTDKARLDVFLNMVLVSVGVVISSYGEIH 156 (380)
Q Consensus 126 ~~l~ek~~~~~~~~v~l~~~Gv~l~~~~~~~ 156 (380)
+++|||++++++.+++++++|++++.+++.+
T Consensus 80 ~~~~er~~~~~~~a~~l~~~Gv~li~~~~~~ 110 (113)
T PF13536_consen 80 LFFKERLSPRRWLAILLILIGVILIAWSDLT 110 (113)
T ss_pred HHhcCCCCHHHHHHHHHHHHHHHHHhhhhcc
Confidence 9999999999999999999999999887643
No 40
>COG2510 Predicted membrane protein [Function unknown]
Probab=99.13 E-value=4.1e-10 Score=87.25 Aligned_cols=135 Identities=10% Similarity=0.126 Sum_probs=106.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHHHHHhhcCCccccccchhhHHHHHHHHHHHHH
Q 016904 161 GTLYQVTGIVAEALRLVLTQVLLQKKGLTLNPITSLYYIAPCSFVFLFVPWYLLEKPMMEVSQIQFNFWIFFSNALCALA 240 (380)
Q Consensus 161 G~~l~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (380)
-.++++.+++++++..++.|--+++ .||...+..-.....+++..........+....-.+..+..++++|+.+..
T Consensus 4 ~~~~ALLsA~fa~L~~iF~KIGl~~----vdp~~At~IRtiVi~~~l~~v~~~~g~~~~~~~~~~k~~lflilSGla~gl 79 (140)
T COG2510 4 AIIYALLSALFAGLTPIFAKIGLEG----VDPDFATTIRTIVILIFLLIVLLVTGNWQAGGEIGPKSWLFLILSGLAGGL 79 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccc----cCccHHHHHHHHHHHHHHHHHHHhcCceecccccCcceehhhhHHHHHHHH
Confidence 3688999999999999999887665 577777777777666666666554433222211122334446778888888
Q ss_pred HHHHHHHHHhhcchhHHHHhhhhhhHHHHHHHHHhcCCCCcchhhhHHHHHHHHHHHHHH
Q 016904 241 LNFSIFLVIGRTGAVTIRVAGVLKDWILIALSTVIFPESTITGLNIIGYAIALCGVVMYN 300 (380)
Q Consensus 241 ~~~~~~~~i~~~~a~~~s~~~~l~~v~~~~~~~l~~~~~~~~~~~~~G~~lii~g~~~~~ 300 (380)
...++|++++.-.+..+..+.-+.++++++++++++ +|+++..+++|+.+|.+|.++..
T Consensus 80 swl~Yf~ALk~G~as~VvPldk~svvl~~lls~lfL-~E~ls~~~~iG~~LI~~Gailvs 138 (140)
T COG2510 80 SWLLYFRALKKGKASRVVPLDKTSVVLAVLLSILFL-GERLSLPTWIGIVLIVIGAILVS 138 (140)
T ss_pred HHHHHHHHHhcCCcceEEEcccccHHHHHHHHHHHh-cCCCCHHHHHHHHHHHhCeeeEe
Confidence 888999999999999999999999999999999999 66799999999999999987643
No 41
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=99.02 E-value=1.1e-07 Score=85.12 Aligned_cols=209 Identities=18% Similarity=0.182 Sum_probs=153.0
Q ss_pred HhhhHHhhhHHHHHHHHHHHHhhhhhcccHhHHHHHH-HHHHHHHHHHHHHhccccccHhH----HHHHHHHHhhhheee
Q 016904 77 EIYATCVVPISAFFASSLWFGNTAYLHISVAFIQMLK-ALMPVATFFMAVLCGTDKARLDV----FLNMVLVSVGVVISS 151 (380)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~il~-~~~pi~v~ll~~~~l~ek~~~~~----~~~v~l~~~Gv~l~~ 151 (380)
+. +...+..|++++.++..++.+++++.++.+.=+. ....+.+.++++++++|--+..+ .+++++.++|+.+..
T Consensus 43 ~~-~~~~~lsG~~W~iGq~~qf~s~~~~GVS~tmPiStg~QLvg~sl~gv~~fgEW~~~~~~~~G~~Al~liiiGv~lts 121 (269)
T PF06800_consen 43 TS-FIVAFLSGAFWAIGQIGQFKSFKKIGVSKTMPISTGLQLVGTSLIGVLFFGEWTTTTQKIIGFLALVLIIIGVILTS 121 (269)
T ss_pred HH-HHHHHHHHHHHHHHHHHHHHHHHHhcceeeeccchhHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHHHhc
Confidence 44 5677788999999999999999999988766554 56778899999999999777665 447888999999888
Q ss_pred eccce--------ehHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHHHHHhhcCCcccccc
Q 016904 152 YGEIH--------FNIVGTLYQVTGIVAEALRLVLTQVLLQKKGLTLNPITSLYYIAPCSFVFLFVPWYLLEKPMMEVSQ 223 (380)
Q Consensus 152 ~~~~~--------~~~~G~~l~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~ 223 (380)
..|.+ ....|++..+++.+.|..|.+..|-. +.++.....=+.+--.+..+......+....
T Consensus 122 ~~~~~~~~~~~~~~~~kgi~~Ll~stigy~~Y~~~~~~~------~~~~~~~~lPqaiGm~i~a~i~~~~~~~~~~---- 191 (269)
T PF06800_consen 122 YQDKKSDKSSSKSNMKKGILALLISTIGYWIYSVIPKAF------HVSGWSAFLPQAIGMLIGAFIFNLFSKKPFF---- 191 (269)
T ss_pred cccccccccccccchhhHHHHHHHHHHHHHHHHHHHHhc------CCChhHhHHHHHHHHHHHHHHHhhccccccc----
Confidence 75432 12469999999999999999987653 2567766664433222222222222111111
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHhhhhhhHHHHHHHHHhcCCCCcch----hhhHHHHHHHHHHHH
Q 016904 224 IQFNFWIFFSNALCALALNFSIFLVIGRTGAVTIRVAGVLKDWILIALSTVIFPESTITG----LNIIGYAIALCGVVM 298 (380)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~a~~~s~~~~l~~v~~~~~~~l~~~~~~~~~----~~~~G~~lii~g~~~ 298 (380)
....|.-+.+|++-...+.+++...++.+..+.=.+..+..+++.+.|.+++||. =+. ..++|.+++++|..+
T Consensus 192 -~k~~~~nil~G~~w~ignl~~~is~~~~G~a~af~lSQ~~vvIStlgGI~il~E~-Kt~ke~~~~~~G~~Liv~G~il 268 (269)
T PF06800_consen 192 -EKKSWKNILTGLIWGIGNLFYLISAQKNGVATAFTLSQLGVVISTLGGIFILKEK-KTKKEMIYTLIGLILIVIGAIL 268 (269)
T ss_pred -ccchHHhhHHHHHHHHHHHHHHHhHHhccchhhhhHHhHHHHHHHhhhheEEEec-CchhhHHHHHHHHHHHHHhhhc
Confidence 1223444666777777888888899999999999999999999999999999554 454 466788888888654
No 42
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=98.95 E-value=4.5e-08 Score=89.12 Aligned_cols=130 Identities=9% Similarity=0.016 Sum_probs=94.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCc-HHHHHHHHHHHHHHHHHHHHHHhhccCCCcccHHhhhHHhhhHHH-H
Q 016904 12 TYLYLLIYILLSSGVILYNKWVLSPKYFNFPF-PITLTMIHMGFSGVVAFFLVRVFKVVSPVKMTFEIYATCVVPISA-F 89 (380)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~k~~l~~~~~~~~~-p~~~~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 89 (380)
...+.++..++........|...+ +.+. +..+..+|+.++.+++.++....++ ....+.+++ ...+..++ .
T Consensus 129 G~~~~l~a~~~~a~~~~~~k~~~~----~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~~~~-~~~~~~~~~~ 201 (260)
T TIGR00950 129 GLLLGLGSGISFALGTVLYKRLVK----KEGPELLQFTGWVLLLGALLLLPFAWFLGP--NPQALSLQW-GALLYLGLIG 201 (260)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHhh----cCCchHHHHHHHHHHHHHHHHHHHHHhcCC--CCCcchHHH-HHHHHHHHHH
Confidence 333444444445555667788776 3431 4456667899888888777654332 222344443 33343444 4
Q ss_pred HHHHHHHHhhhhhcccHhHHHHHHHHHHHHHHHHHHHhccccccHhHHHHHHHHHhhhh
Q 016904 90 FASSLWFGNTAYLHISVAFIQMLKALMPVATFFMAVLCGTDKARLDVFLNMVLVSVGVV 148 (380)
Q Consensus 90 ~~~~~~~~~~al~~~~~~~~~il~~~~pi~v~ll~~~~l~ek~~~~~~~~v~l~~~Gv~ 148 (380)
......++++++++++++.++++.++.|++++++++++++|+++..++.|..+.+.|+.
T Consensus 202 ~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~ll~~~~~~E~~~~~~~~G~~li~~g~~ 260 (260)
T TIGR00950 202 TALAYFLWNKGLTLVDPSAASILALAEPLVALLLGLLILGETLSLPQLIGGALIIAAVL 260 (260)
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcC
Confidence 56788999999999999999999999999999999999999999999999999999863
No 43
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=98.83 E-value=1.5e-07 Score=87.45 Aligned_cols=138 Identities=10% Similarity=0.120 Sum_probs=106.4
Q ss_pred eehHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHHHHHhhcCCccc---cccchhhHHHHH
Q 016904 156 HFNIVGTLYQVTGIVAEALRLVLTQVLLQKKGLTLNPITSLYYIAPCSFVFLFVPWYLLEKPMME---VSQIQFNFWIFF 232 (380)
Q Consensus 156 ~~~~~G~~l~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~---~~~~~~~~~~~~ 232 (380)
+....|.+++++++++|+...+..|.. .+ ++|.++.++...++.+++++........... ...+ ......+
T Consensus 4 ~~~~~g~~~~l~a~~~wg~~~~~~k~~-~~----~~~~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 77 (296)
T PRK15430 4 KQTRQGVLLALAAYFIWGIAPAYFKLI-YY----VPADEILTHRVIWSFFFMVVLMSICRQWSYLKTLIQTP-QKIFMLA 77 (296)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHh-cC----CCHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHcCH-HHHHHHH
Confidence 345689999999999999999999754 32 7899999999999988776665433211110 0011 1222233
Q ss_pred HHHHHHHHHHHHHHHHHhhcchhHHHHhhhhhhHHHHHHHHHhcCCCCcchhhhHHHHHHHHHHHHHH
Q 016904 233 SNALCALALNFSIFLVIGRTGAVTIRVAGVLKDWILIALSTVIFPESTITGLNIIGYAIALCGVVMYN 300 (380)
Q Consensus 233 ~~~~~~~~~~~~~~~~i~~~~a~~~s~~~~l~~v~~~~~~~l~~~~~~~~~~~~~G~~lii~g~~~~~ 300 (380)
.+++.....+.+++++++++++..+++..++.|+++.+++++++ +|+++..+++|.++.++|+.+..
T Consensus 78 ~~~~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l-~E~~~~~~~~g~~l~~~Gv~li~ 144 (296)
T PRK15430 78 VSAVLIGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFL-GERFRRMQWLAVILAICGVLVQL 144 (296)
T ss_pred HHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHh-cCCCcHHHHHHHHHHHHHHHHHH
Confidence 45555556677889999999999999999999999999999999 67799999999999999998764
No 44
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=98.82 E-value=1.3e-07 Score=87.19 Aligned_cols=132 Identities=10% Similarity=0.043 Sum_probs=97.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHHHHHhhc-CCccccccchhhHHHHHHHHHHHHH
Q 016904 162 TLYQVTGIVAEALRLVLTQVLLQKKGLTLNPITSLYYIAPCSFVFLFVPWYLLE-KPMMEVSQIQFNFWIFFSNALCALA 240 (380)
Q Consensus 162 ~~l~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (380)
+++.+.+++++|.+.++.|+..+++ ++. ..+....+++.+.|...... ...+... ....+..++.+++....
T Consensus 3 ~~~~~~aa~~~a~~~~~~k~~~~~~----~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 75 (281)
T TIGR03340 3 LTLVVFSALMHAGWNLMAKSHADKE----PDF--LWWALLAHSVLLTPYGLWYLAQVGWSRL-PATFWLLLAISAVANMV 75 (281)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCch----hHH--HHHHHHHHHHHHHHHHHHhcccCCCCCc-chhhHHHHHHHHHHHHH
Confidence 5788999999999999999876652 332 35555566666666654321 1111111 11223344556666667
Q ss_pred HHHHHHHHHhhcchhHHHHhhhhhhHHHHHHHHHhcCCCCcchhhhHHHHHHHHHHHHHHH
Q 016904 241 LNFSIFLVIGRTGAVTIRVAGVLKDWILIALSTVIFPESTITGLNIIGYAIALCGVVMYNY 301 (380)
Q Consensus 241 ~~~~~~~~i~~~~a~~~s~~~~l~~v~~~~~~~l~~~~~~~~~~~~~G~~lii~g~~~~~~ 301 (380)
.+.+.+.++++.++...+.+.+..|+++.+++++++ +|+++..+++|.++++.|+.+...
T Consensus 76 ~~~~~~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~-~e~~~~~~~~g~~~~~~Gv~ll~~ 135 (281)
T TIGR03340 76 YFLGLAQAYHHADVGLVYPLARSSPLLVAIWATLTL-GETLSPLAWLGILIITLGLLVLGL 135 (281)
T ss_pred HHHHHHHHHhcCChhhhhhHHhhhHHHHHHHHHHHH-cCCCCHHHHHHHHHHHHHHHHHhc
Confidence 777788899999999999999999999999999999 677999999999999999987653
No 45
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=98.81 E-value=1.9e-07 Score=84.87 Aligned_cols=135 Identities=14% Similarity=0.153 Sum_probs=105.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHHHHHhhcCCc-----cccccchhhHHHHHHH
Q 016904 160 VGTLYQVTGIVAEALRLVLTQVLLQKKGLTLNPITSLYYIAPCSFVFLFVPWYLLEKPM-----MEVSQIQFNFWIFFSN 234 (380)
Q Consensus 160 ~G~~l~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~-----~~~~~~~~~~~~~~~~ 234 (380)
.|.+++++++++|+...+..|.. .+ ++|.++.++-.+++.+++++......... ............+...
T Consensus 2 ~g~~~~i~a~~~wg~~~~~~k~~-~~----~~~~~i~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (256)
T TIGR00688 2 KGIIVSLLASFLFGYMYYYSKLL-KP----LPATDILGHRMIWSFPFMLLSVTLFRQWAALIERLKRIQKRPLILSLLLC 76 (256)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHh-cc----CCHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHhCcccchHHHHHHHH
Confidence 38899999999999999999873 32 79999999999999887766553322110 1001111223344556
Q ss_pred HHHHHHHHHHHHHHHhhcchhHHHHhhhhhhHHHHHHHHHhcCCCCcchhhhHHHHHHHHHHHHHH
Q 016904 235 ALCALALNFSIFLVIGRTGAVTIRVAGVLKDWILIALSTVIFPESTITGLNIIGYAIALCGVVMYN 300 (380)
Q Consensus 235 ~~~~~~~~~~~~~~i~~~~a~~~s~~~~l~~v~~~~~~~l~~~~~~~~~~~~~G~~lii~g~~~~~ 300 (380)
+++....+.+++++++++++..+++..++.|+++.+++++++ +|+++..+++|.++.++|+.+..
T Consensus 77 g~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l-~Ek~~~~~~l~~~~~~~Gv~li~ 141 (256)
T TIGR00688 77 GLLIGFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFL-KERISRFQFIAVIIATLGVISNI 141 (256)
T ss_pred HHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHH-hcCCCHHHHHHHHHHHHHHHHHH
Confidence 666666777888999999999999999999999999999999 67799999999999999998654
No 46
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=98.66 E-value=1.2e-06 Score=83.31 Aligned_cols=136 Identities=10% Similarity=0.074 Sum_probs=105.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHHHHHhhcCCc-cccccchhhHHHHHHHHHHHH
Q 016904 161 GTLYQVTGIVAEALRLVLTQVLLQKKGLTLNPITSLYYIAPCSFVFLFVPWYLLEKPM-MEVSQIQFNFWIFFSNALCAL 239 (380)
Q Consensus 161 G~~l~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 239 (380)
-.+.++..-++|+.+.++.|..++.. +++....++-..+++++++|.....+... .....+.. +..+.+.++++.
T Consensus 14 ~~~~~~~~q~~~~~~~~~~k~a~~~G---~~~~~~~~~R~~iA~l~Ll~~~~~~~~~~~~~~~~~~~-~~~l~l~g~~g~ 89 (358)
T PLN00411 14 FLTAMLATETSVVGISTLFKVATSKG---LNIYPFLGYSYLLASLLLLPSLFFTNRSRSLPPLSVSI-LSKIGLLGFLGS 89 (358)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHCC---CCccHHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHH-HHHHHHHHHHHH
Confidence 35677888899999999999998753 78899999999999988888876544321 11112222 222333455554
Q ss_pred HHHHHHHHHHhhcchhHHHHhhhhhhHHHHHHHHHh------cCCCCcchhhhHHHHHHHHHHHHHHH
Q 016904 240 ALNFSIFLVIGRTGAVTIRVAGVLKDWILIALSTVI------FPESTITGLNIIGYAIALCGVVMYNY 301 (380)
Q Consensus 240 ~~~~~~~~~i~~~~a~~~s~~~~l~~v~~~~~~~l~------~~~~~~~~~~~~G~~lii~g~~~~~~ 301 (380)
..+.+.+.++++++|..++++.++.|+++.++++++ + +|+++..+++|.++.++|+.+...
T Consensus 90 ~~~~~~~~gl~~tsa~~asll~~~~P~~~~lla~~~~~e~~~~-~er~~~~~~~G~~l~~~Gv~ll~~ 156 (358)
T PLN00411 90 MYVITGYIGIEYSNPTLASAISNITPALTFILAIIFRMEKVSF-KERSSVAKVMGTILSLIGALVVIF 156 (358)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHHhchhhh-cccccHHHHHHHHHHHHHHHHHHH
Confidence 555668889999999999999999999999999999 6 677999999999999999987654
No 47
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=98.59 E-value=1.8e-06 Score=80.11 Aligned_cols=109 Identities=12% Similarity=0.044 Sum_probs=82.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCCCcccHHhhhHHhhhHHH-HHHHHHHHHhhhhhcccHhHHHHHHHHHHHHHHH
Q 016904 44 PITLTMIHMGFSGVVAFFLVRVFKVVSPVKMTFEIYATCVVPISA-FFASSLWFGNTAYLHISVAFIQMLKALMPVATFF 122 (380)
Q Consensus 44 p~~~~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~al~~~~~~~~~il~~~~pi~v~l 122 (380)
+...+.+++.++.+++.++............+.+.+ ..++..++ .......++++++++.+++.++++.++.|++.++
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~l~i~~s~~~~~l~~~~~~~~~~~~~s~~~~l~Pi~a~i 255 (292)
T PRK11272 177 GMMAGAAEMLAAGVVLLIASLLSGERLTALPTLSGF-LALGYLAVFGSIIAISAYMYLLRNVRPALATSYAYVNPVVAVL 255 (292)
T ss_pred chHHHHHHHHHHHHHHHHHHHHcCCcccccCCHHHH-HHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHH
Confidence 556778898888887776654322111111234443 33333444 4556788999999999999999999999999999
Q ss_pred HHHHhccccccHhHHHHHHHHHhhhheeeec
Q 016904 123 MAVLCGTDKARLDVFLNMVLVSVGVVISSYG 153 (380)
Q Consensus 123 l~~~~l~ek~~~~~~~~v~l~~~Gv~l~~~~ 153 (380)
+++++++|+++..+++|..+.+.|+.+....
T Consensus 256 ~~~~~l~E~~t~~~iiG~~lIi~gv~~~~~~ 286 (292)
T PRK11272 256 LGTGLGGETLSPIEWLALGVIVFAVVLVTLG 286 (292)
T ss_pred HHHHHcCCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999876543
No 48
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=98.59 E-value=2.7e-06 Score=79.00 Aligned_cols=131 Identities=11% Similarity=-0.005 Sum_probs=90.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCcHHHHHHHHHHHHHHHHHHHHHHhhccCCCcccHHhhhHHhhhHHH-HH
Q 016904 12 TYLYLLIYILLSSGVILYNKWVLSPKYFNFPFPITLTMIHMGFSGVVAFFLVRVFKVVSPVKMTFEIYATCVVPISA-FF 90 (380)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~k~~l~~~~~~~~~p~~~~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 90 (380)
..++.++..++.....+..|...+ +.+ |.... +..+++.+++.++..... .....++.. +...+..++ ..
T Consensus 149 G~ll~l~aa~~~a~~~v~~r~~~~----~~~-~~~~~-~~~~~~~~~l~~~~~~~~--~~~~~~~~~-~~~~l~lgv~~t 219 (293)
T PRK10532 149 GAALALGAGACWAIYILSGQRAGA----EHG-PATVA-IGSLIAALIFVPIGALQA--GEALWHWSI-LPLGLAVAILST 219 (293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc----cCC-chHHH-HHHHHHHHHHHHHHHHcc--CcccCCHHH-HHHHHHHHHHHH
Confidence 334444445555556667777766 555 66664 445556666655544221 111223333 222233444 34
Q ss_pred HHHHHHHhhhhhcccHhHHHHHHHHHHHHHHHHHHHhccccccHhHHHHHHHHHhhhheee
Q 016904 91 ASSLWFGNTAYLHISVAFIQMLKALMPVATFFMAVLCGTDKARLDVFLNMVLVSVGVVISS 151 (380)
Q Consensus 91 ~~~~~~~~~al~~~~~~~~~il~~~~pi~v~ll~~~~l~ek~~~~~~~~v~l~~~Gv~l~~ 151 (380)
.+.+.++++++++++++.++++.++.|++..++++++++|+++..+++|..+.++|+....
T Consensus 220 ~~~~~l~~~~~~~~~a~~as~~~~l~Pv~a~l~~~l~lgE~~~~~~~iG~~lIl~~~~~~~ 280 (293)
T PRK10532 220 ALPYSLEMIALTRLPTRTFGTLMSMEPALAAVSGMIFLGETLTLIQWLALGAIIAASMGST 280 (293)
T ss_pred HHHHHHHHHHHHhcChhHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHH
Confidence 5677899999999999999999999999999999999999999999999999999987654
No 49
>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional
Probab=98.55 E-value=2.1e-06 Score=67.31 Aligned_cols=64 Identities=14% Similarity=0.074 Sum_probs=60.0
Q ss_pred HHHHHHHHHHhhhhhcccHhHHHHHHHHHHHHHHHHHHHhccccccHhHHHHHHHHHhhhheee
Q 016904 88 AFFASSLWFGNTAYLHISVAFIQMLKALMPVATFFMAVLCGTDKARLDVFLNMVLVSVGVVISS 151 (380)
Q Consensus 88 ~~~~~~~~~~~~al~~~~~~~~~il~~~~pi~v~ll~~~~l~ek~~~~~~~~v~l~~~Gv~l~~ 151 (380)
++++...++...+++.+|.+.+..+.++.++++.+++++++|||+++++++|+.++++|++++.
T Consensus 45 ~~~~l~~~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~ls~~~~~Gi~lii~Gv~~i~ 108 (111)
T PRK15051 45 ACLGLAMVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPRHWCGVAFIIGGIVILG 108 (111)
T ss_pred HHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHh
Confidence 5577788999999999999999999999999999999999999999999999999999998764
No 50
>PRK13499 rhamnose-proton symporter; Provisional
Probab=98.47 E-value=0.00023 Score=66.61 Aligned_cols=222 Identities=9% Similarity=-0.035 Sum_probs=141.4
Q ss_pred cHHhhhHHhhhHHHHHHHHHHHHhhhhhcccHhHHHHHH-HHHHHHHHHHHHHhccccc-------cHhHHHHHHHHHhh
Q 016904 75 TFEIYATCVVPISAFFASSLWFGNTAYLHISVAFIQMLK-ALMPVATFFMAVLCGTDKA-------RLDVFLNMVLVSVG 146 (380)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~il~-~~~pi~v~ll~~~~l~ek~-------~~~~~~~v~l~~~G 146 (380)
+.+. +...+..|++.+.++..+..+++|+.++.+.-+. .+.-+...++..++++|-. ...-.+++++.++|
T Consensus 69 ~~~~-~~~~~l~G~~W~iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~g~~~~~gv~liliG 147 (345)
T PRK13499 69 SGST-LLPVFLFGALWGIGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNGGRMTLLGVLVALIG 147 (345)
T ss_pred CHHH-HHHHHHHHHHHHhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHH
Confidence 3444 4666778899999999999999999999876554 5788889999999988643 23458889999999
Q ss_pred hheeee----ccc---------eehHHHHHHHHHHHHHHHHHH-------HHHHHHhhhCCCCCCHHHHHHHHHH---HH
Q 016904 147 VVISSY----GEI---------HFNIVGTLYQVTGIVAEALRL-------VLTQVLLQKKGLTLNPITSLYYIAP---CS 203 (380)
Q Consensus 147 v~l~~~----~~~---------~~~~~G~~l~l~s~~~~a~~~-------v~~~~~~~~~~~~~~~~~~~~~~~~---~~ 203 (380)
+++... .|. .....|+++++++.+.++.|. ...+.... ...++.....-+.. .+
T Consensus 148 i~l~s~Ag~~k~~~~~~~~~~~~~~~KGi~ialisgi~~~~f~~~~~~~~~~~~~a~~---~g~~~~~~~lp~~~~~~~G 224 (345)
T PRK13499 148 VAIVGRAGQLKERKMGIKKAEEFNLKKGLILAVMSGIFSACFSFAMDAGKPMHEAAAA---LGVDPLYAALPSYVVIMGG 224 (345)
T ss_pred HHHHHHhhhhcccccccccccccchHhHHHHHHHHHHHHHHHHHHHhhccchhhhhhh---cCCCchHHHHHHHHHHHHH
Confidence 998776 332 123589999999999999998 43333211 12343333222222 33
Q ss_pred HHHHHHHHHh---hcCCcc----ccccc----hhhHHHHHHHHHHHHHHHHHHHHHHhhcchhHHH----HhhhhhhHHH
Q 016904 204 FVFLFVPWYL---LEKPMM----EVSQI----QFNFWIFFSNALCALALNFSIFLVIGRTGAVTIR----VAGVLKDWIL 268 (380)
Q Consensus 204 ~i~l~~~~~~---~~~~~~----~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~i~~~~a~~~s----~~~~l~~v~~ 268 (380)
..+.-...-. ...... +.... .......+++|++-+..+..+...-++.+..... +...+.-+++
T Consensus 225 ~~~~n~~~~~~~~~k~~~~~~~~~~~~~~~~~~~n~l~~~l~G~~W~~~~~~y~~~~~~~g~~~~~~sw~l~m~~~Viis 304 (345)
T PRK13499 225 GAITNLGFCFIRLAKNKDLSLKADFSLAKPLLITNVLLSALAGVMWYLQFFFYAMGHSKLGAQYDFVSWMLHMSFYVLCG 304 (345)
T ss_pred HHHHHHHHHHHHHhhCCCcccchhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccchHHHHHhccHHHHHH
Confidence 3322211111 011111 11111 1223344667777777777777777776444332 3346777999
Q ss_pred HHHHHHhcCCCCcc------hhhhHHHHHHHHHHHHHHHh
Q 016904 269 IALSTVIFPESTIT------GLNIIGYAIALCGVVMYNYI 302 (380)
Q Consensus 269 ~~~~~l~~~~~~~~------~~~~~G~~lii~g~~~~~~~ 302 (380)
.++|.+ + +|.=+ ...++|.+++++|..+..+.
T Consensus 305 tlwGi~-l-kE~K~a~~k~~~~l~~G~vliI~g~~lig~~ 342 (345)
T PRK13499 305 NLWGLV-L-KEWKGASRRPVRVLSLGCVVIILAANIVGLG 342 (345)
T ss_pred HHhhhh-h-hhccCCCccchhHHHHHHHHHHHHHHHHhhc
Confidence 999995 7 44344 57799999999999886553
No 51
>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins. O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.
Probab=98.45 E-value=1.7e-05 Score=65.93 Aligned_cols=136 Identities=13% Similarity=0.033 Sum_probs=104.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCC---CcCCCcHHHHHHHHHHHHHHHHHHHHHHhhccCCCc---------cc-HHhhhH
Q 016904 15 YLLIYILLSSGVILYNKWVLSPK---YFNFPFPITLTMIHMGFSGVVAFFLVRVFKVVSPVK---------MT-FEIYAT 81 (380)
Q Consensus 15 ~~~~~~~~~~~~~~~~k~~l~~~---~~~~~~p~~~~~~r~~~~~~~l~~~~~~~~~~~~~~---------~~-~~~~~~ 81 (380)
+++...++........|..++++ ..+.+ |+.+..+....+.+++.+.....+..+..+ .. ..+.+.
T Consensus 4 ~~l~s~~~~al~~v~~~~~~~~~~~~~~~~~-~~~l~~~~~~~s~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 82 (153)
T PF03151_consen 4 LALASSLFSALRNVLIKKLLKKVSSNSKKLN-PLNLLYYNSPISFIILLPLAFLLEGPQLSSFFSEIFGEELSSDPNFIF 82 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccccccCCC-HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhhhcchHHHHH
Confidence 34444555555666778887742 35666 999999999989888888766544432111 00 223345
Q ss_pred HhhhHHHHHHHHHHHHhhhhhcccHhHHHHHHHHHHHHHHHHHHHhccccccHhHHHHHHHHHhhhheee
Q 016904 82 CVVPISAFFASSLWFGNTAYLHISVAFIQMLKALMPVATFFMAVLCGTDKARLDVFLNMVLVSVGVVISS 151 (380)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~al~~~~~~~~~il~~~~pi~v~ll~~~~l~ek~~~~~~~~v~l~~~Gv~l~~ 151 (380)
.++..+++....+...++.++++++-+.+++.....+.+.++++++++|+++..++.|+.++++|+.+-.
T Consensus 83 ~~~~~~~~~~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~~~~G~~l~~~G~~~Ys 152 (153)
T PF03151_consen 83 LLILSGLLAFLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPLQIIGIVLALVGVLLYS 152 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHHHHHHHHHHHHHHheee
Confidence 5666677777888999999999999999999999999999999999999999999999999999998754
No 52
>PRK11689 aromatic amino acid exporter; Provisional
Probab=98.43 E-value=9.6e-06 Score=75.37 Aligned_cols=129 Identities=11% Similarity=0.071 Sum_probs=87.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCcCCCcHHHHHHHHHHHHHHHHHHHHHHhhccCCCcccHHhhhHHhhhHHHHHHHH
Q 016904 14 LYLLIYILLSSGVILYNKWVLSPKYFNFPFPITLTMIHMGFSGVVAFFLVRVFKVVSPVKMTFEIYATCVVPISAFFASS 93 (380)
Q Consensus 14 ~~~~~~~~~~~~~~~~~k~~l~~~~~~~~~p~~~~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (380)
+++++..+++....+++|...+ +.+ |.... +..+.+.+.+...... ......++..+ ..++..++...+.
T Consensus 159 ~~~l~aa~~~A~~~v~~k~~~~----~~~-~~~~~---~~~~~~~l~~~~~~~~-~~~~~~~~~~~-~~l~~~~~~t~~~ 228 (295)
T PRK11689 159 GLAFIGAFIWAAYCNVTRKYAR----GKN-GITLF---FILTALALWIKYFLSP-QPAMVFSLPAI-IKLLLAAAAMGFG 228 (295)
T ss_pred HHHHHHHHHHHHHHHHHhhccC----CCC-chhHH---HHHHHHHHHHHHHHhc-CccccCCHHHH-HHHHHHHHHHHHH
Confidence 3444444555555566777655 444 55432 2223333333222211 11223444443 3344455556668
Q ss_pred HHHHhhhhhcccHhHHHHHHHHHHHHHHHHHHHhccccccHhHHHHHHHHHhhhheeee
Q 016904 94 LWFGNTAYLHISVAFIQMLKALMPVATFFMAVLCGTDKARLDVFLNMVLVSVGVVISSY 152 (380)
Q Consensus 94 ~~~~~~al~~~~~~~~~il~~~~pi~v~ll~~~~l~ek~~~~~~~~v~l~~~Gv~l~~~ 152 (380)
+.++++++++++++.++.+.+..|++..++++++++|+++..+++|.+++++|+.+...
T Consensus 229 ~~l~~~al~~~~a~~~s~~~~l~Pv~a~i~~~~~lgE~~~~~~~iG~~lI~~gv~~~~~ 287 (295)
T PRK11689 229 YAAWNVGILHGNMTLLATASYFTPVLSAALAALLLSTPLSFSFWQGVAMVTAGSLLCWL 287 (295)
T ss_pred HHHHHHHHHccCHHHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhHHHHhh
Confidence 89999999999999999999999999999999999999999999999999999877644
No 53
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=98.39 E-value=5.3e-06 Score=76.77 Aligned_cols=66 Identities=15% Similarity=0.080 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHhhhhhcccHhHHHHHHHHHHHHHHHHHHHhccccccHhHHHHHHHHHhhhheeee
Q 016904 87 SAFFASSLWFGNTAYLHISVAFIQMLKALMPVATFFMAVLCGTDKARLDVFLNMVLVSVGVVISSY 152 (380)
Q Consensus 87 ~~~~~~~~~~~~~al~~~~~~~~~il~~~~pi~v~ll~~~~l~ek~~~~~~~~v~l~~~Gv~l~~~ 152 (380)
-+.+..+..+...|+.+.|.+..+=+.+...++.++++.+++|||++++.+.|..++++|.+++..
T Consensus 57 ~~~~~~g~~~~~~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~~~~~~~G~~l~i~G~~liv~ 122 (300)
T PF05653_consen 57 LLLMVLGEILNFVALGFAPASLVAPLGALSLVFNAVLARFFLGEKLTRRDIVGCALIILGSVLIVI 122 (300)
T ss_pred HHHHhcchHHHHHHHHhhhHHHHHHHHhhhhhhHHHHhHHHhcccchHhHHhhHHHHHhhheeeEE
Confidence 345667778899999999999999999999999999999999999999999999999999987654
No 54
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=98.37 E-value=4.4e-06 Score=77.92 Aligned_cols=138 Identities=12% Similarity=-0.007 Sum_probs=93.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCcHHHHHHHHHHHHHHHHHHHHHHhhccCCCcccHH---------hhhHH
Q 016904 12 TYLYLLIYILLSSGVILYNKWVLSPKYFNFPFPITLTMIHMGFSGVVAFFLVRVFKVVSPVKMTFE---------IYATC 82 (380)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~k~~l~~~~~~~~~p~~~~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~---------~~~~~ 82 (380)
..+++++..+++.......|...+ ..+++ |..++.++..++.+++.++.............+. ..+..
T Consensus 146 G~~~~l~a~~~~a~~~v~~k~~~~--~~~~~-~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (302)
T TIGR00817 146 GFLSAMISNITFVSRNIFSKKAMT--IKSLD-KTNLYAYISIMSLFLLSPPAFITEGPPFLPHGFMQAISGVNVTKIYTV 222 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhc--cCCCC-cccHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHhhcccCchHHHHH
Confidence 334455555555555666676655 23466 8899999999998888877653321111010010 00111
Q ss_pred hhhHHH-HHHHHHHHHhhhhhcccHhHHHHHHHHHHHHHHHHHHHhccccccHhHHHHHHHHHhhhheeee
Q 016904 83 VVPISA-FFASSLWFGNTAYLHISVAFIQMLKALMPVATFFMAVLCGTDKARLDVFLNMVLVSVGVVISSY 152 (380)
Q Consensus 83 ~~~~~~-~~~~~~~~~~~al~~~~~~~~~il~~~~pi~v~ll~~~~l~ek~~~~~~~~v~l~~~Gv~l~~~ 152 (380)
.+..++ ++...+.+++.+++++++..+++.....|++++++++++++|+++..+++|..++++|+.+...
T Consensus 223 ~~~~~~~~~~~~~~~~~~~l~~~sa~t~sv~~~l~pv~~~~~~~~~lge~lt~~~~~G~~lil~Gv~l~~~ 293 (302)
T TIGR00817 223 SLVAAMGFFHFYQQVAFMLLGRVSPLTHSVGNCMKRVVVIVVSILFFGTKISPQQVFGTGIAIAGVFLYSR 293 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHccCCchHHHHHhhhhhhheeeeehhhcCCCCchhHHHHHHHHHHHHHHHHH
Confidence 112222 3333345667899999999999999999999999999999999999999999999999987643
No 55
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=98.34 E-value=2.9e-05 Score=72.33 Aligned_cols=139 Identities=15% Similarity=0.092 Sum_probs=89.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCcHHHHHHHHHHHHHHHHHHHHHHhhccC-----CCcccHHhhhHHhhhH
Q 016904 12 TYLYLLIYILLSSGVILYNKWVLSPKYFNFPFPITLTMIHMGFSGVVAFFLVRVFKVVS-----PVKMTFEIYATCVVPI 86 (380)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~k~~l~~~~~~~~~p~~~~~~r~~~~~~~l~~~~~~~~~~~-----~~~~~~~~~~~~~~~~ 86 (380)
...++++-.+++....+..|...+ ...-+....+..+..+++.+.+........... ....+...+.......
T Consensus 144 G~~l~l~aal~~a~~~v~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 221 (299)
T PRK11453 144 GFMLTLAAAFSWACGNIFNKKIMS--HSTRPAVMSLVVWSALIPIIPFFVASLILDGSATMIHSLVTIDMTTILSLMYLA 221 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc--ccCccchhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhhccCCHHHHHHHHHHH
Confidence 333444444455555556676554 111111344455556555444333322221111 0123444433333333
Q ss_pred HHHHHHHHHHHhhhhhcccHhHHHHHHHHHHHHHHHHHHHhccccccHhHHHHHHHHHhhhheeee
Q 016904 87 SAFFASSLWFGNTAYLHISVAFIQMLKALMPVATFFMAVLCGTDKARLDVFLNMVLVSVGVVISSY 152 (380)
Q Consensus 87 ~~~~~~~~~~~~~al~~~~~~~~~il~~~~pi~v~ll~~~~l~ek~~~~~~~~v~l~~~Gv~l~~~ 152 (380)
.+...+...++++++++.+++.++.+..+.|++..++++++++|+++..+++|..++++|+.+...
T Consensus 222 i~~t~~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~~~~~l~lgE~~~~~~~iG~~lI~~gv~l~~~ 287 (299)
T PRK11453 222 FVATIVGYGIWGTLLGRYETWRVAPLSLLVPVVGLASAALLLDERLTGLQFLGAVLIMAGLYINVF 287 (299)
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHhc
Confidence 334456788999999999999999999999999999999999999999999999999999987654
No 56
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=98.25 E-value=6.7e-05 Score=71.39 Aligned_cols=138 Identities=15% Similarity=0.191 Sum_probs=97.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCC-HHHHHHHHHHHHHHHHHHHHHhhcCCccccccchhhHHHHHHHHH
Q 016904 158 NIVGTLYQVTGIVAEALRLVLTQVLLQKKGLTLN-PITSLYYIAPCSFVFLFVPWYLLEKPMMEVSQIQFNFWIFFSNAL 236 (380)
Q Consensus 158 ~~~G~~l~l~s~~~~a~~~v~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (380)
++.-.++.++--.+...++++.|..++. .+ |..+..++.+++.++..+.....-........+...+..++..|+
T Consensus 47 ~~~~~~~~~~wy~~s~~~~~~nK~vl~~----~~~P~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~llp~gl 122 (350)
T PTZ00343 47 KWKLALLFLTWYALNVLYVVDNKLALNM----LPLPWTISSLQLFVGWLFALLYWATGFRKIPRIKSLKLFLKNFLPQGL 122 (350)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHh----CChhHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHH
Confidence 3334445555555556678888888876 46 999999999988766544432211110101112223334455566
Q ss_pred HHHHHHHHHHHHHhhcchhHHHHhhhhhhHHHHHHHHHhcCCCCcchhhhHHHHHHHHHHHHHH
Q 016904 237 CALALNFSIFLVIGRTGAVTIRVAGVLKDWILIALSTVIFPESTITGLNIIGYAIALCGVVMYN 300 (380)
Q Consensus 237 ~~~~~~~~~~~~i~~~~a~~~s~~~~l~~v~~~~~~~l~~~~~~~~~~~~~G~~lii~g~~~~~ 300 (380)
++...+...+.+++.+++..++++..+.|+++++++++++ +|+++..+++|.+++++|+.+..
T Consensus 123 ~~~~~~~~~~~sl~~~svs~~~iika~~Pvft~lls~~~l-~ek~s~~~~l~l~l~v~Gv~l~~ 185 (350)
T PTZ00343 123 CHLFVHFGAVISMGLGAVSFTHVVKAAEPVFTALLSILFL-KQFLNLYAYLSLIPIVGGVALAS 185 (350)
T ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHh-CCCccHHHHHHHHHHHHHHHhee
Confidence 6665566667889999999999999999999999999999 77799999999999999998754
No 57
>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional
Probab=98.22 E-value=7.5e-05 Score=60.02 Aligned_cols=119 Identities=10% Similarity=0.018 Sum_probs=79.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHHHHHhhcCCccccccchhhHHHHHHHHHHHH
Q 016904 160 VGTLYQVTGIVAEALRLVLTQVLLQKKGLTLNPITSLYYIAPCSFVFLFVPWYLLEKPMMEVSQIQFNFWIFFSNALCAL 239 (380)
Q Consensus 160 ~G~~l~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (380)
.|.++.+.+.++.+...++.|+-+++.+. .+.. .. .. .. ... ..+ +....++ +.++..
T Consensus 2 ~~~~~i~~sv~l~~~gQl~~K~g~~~~g~-~~~~---~~-~~-~~----~~~-~~~--------p~~~i~l---gl~~~~ 59 (129)
T PRK02971 2 MGYLWGLASVLLASVAQLSLKWGMSRLPL-LSHA---WD-FI-AA----LLA-FGL--------ALRAVLL---GLAGYA 59 (129)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHhhCCC-ccch---hH-HH-HH----HHH-Hhc--------cHHHHHH---HHHHHH
Confidence 47889999999999999999987766432 1111 00 00 00 000 000 0011222 223333
Q ss_pred HHHHHHHHHHhhcchhHHHHhhhhhhHHHHHHHHH--hcCCCCcchhhhHHHHHHHHHHHHHHH
Q 016904 240 ALNFSIFLVIGRTGAVTIRVAGVLKDWILIALSTV--IFPESTITGLNIIGYAIALCGVVMYNY 301 (380)
Q Consensus 240 ~~~~~~~~~i~~~~a~~~s~~~~l~~v~~~~~~~l--~~~~~~~~~~~~~G~~lii~g~~~~~~ 301 (380)
..++++..++++.+...+..+....++...+.++. +| +|++++.+++|.++|++|+++.+.
T Consensus 60 la~~~w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~-~E~ls~~~~iGi~lIi~GV~lv~~ 122 (129)
T PRK02971 60 LSMLCWLKALRYLPLSRAYPLLSLSYALVYLAAMLLPWF-NETFSLKKTLGVACIMLGVWLINL 122 (129)
T ss_pred HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHHHHhcc
Confidence 34456788999999999998888888778777775 78 777999999999999999999764
No 58
>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional
Probab=98.00 E-value=3.8e-05 Score=61.72 Aligned_cols=72 Identities=18% Similarity=0.086 Sum_probs=63.7
Q ss_pred hhhHHHHHHHHHHHHhhhhhcccHhHHHHHHHHHHHHHHHHHHH--hccccccHhHHHHHHHHHhhhheeeecc
Q 016904 83 VVPISAFFASSLWFGNTAYLHISVAFIQMLKALMPVATFFMAVL--CGTDKARLDVFLNMVLVSVGVVISSYGE 154 (380)
Q Consensus 83 ~~~~~~~~~~~~~~~~~al~~~~~~~~~il~~~~pi~v~ll~~~--~l~ek~~~~~~~~v~l~~~Gv~l~~~~~ 154 (380)
+....+++.+...+++.+++..|++.+.-+.+..++++.+.++. ++||++++.+++|+.++++|+.++..++
T Consensus 51 i~lgl~~~~la~~~w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~~~iGi~lIi~GV~lv~~~~ 124 (129)
T PRK02971 51 VLLGLAGYALSMLCWLKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFSLKKTLGVACIMLGVWLINLPT 124 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhccCC
Confidence 34555678889999999999999999999999999999888885 8999999999999999999999887543
No 59
>PF13536 EmrE: Multidrug resistance efflux transporter
Probab=97.95 E-value=0.00019 Score=56.44 Aligned_cols=67 Identities=15% Similarity=0.221 Sum_probs=56.3
Q ss_pred HHHHH-HHHHHHHHHHhhcchhHHHHhhhhhhHHHHHHHHHhcCCCCcchhhhHHHHHHHHHHHHHHHhh
Q 016904 235 ALCAL-ALNFSIFLVIGRTGAVTIRVAGVLKDWILIALSTVIFPESTITGLNIIGYAIALCGVVMYNYIK 303 (380)
Q Consensus 235 ~~~~~-~~~~~~~~~i~~~~a~~~s~~~~l~~v~~~~~~~l~~~~~~~~~~~~~G~~lii~g~~~~~~~~ 303 (380)
+.+.. ..+..+++++++.++ .++....+.|+++.+++++++ +|+++..+++|..++++|+.+..+..
T Consensus 41 g~~~~~~~~~~~~~a~~~~~~-~v~~i~~~~pi~~~ll~~~~~-~er~~~~~~~a~~l~~~Gv~li~~~~ 108 (113)
T PF13536_consen 41 GLLGFGVAYLLFFYALSYAPA-LVAAIFSLSPIFTALLSWLFF-KERLSPRRWLAILLILIGVILIAWSD 108 (113)
T ss_pred HHHHHHHHHHHHHHHHHhCcH-HHHHHHHHHHHHHHHHHHHHh-cCCCCHHHHHHHHHHHHHHHHHhhhh
Confidence 44433 556667788999995 777999999999999999999 66799999999999999999987643
No 60
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=97.87 E-value=0.00054 Score=61.51 Aligned_cols=139 Identities=14% Similarity=0.157 Sum_probs=102.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHHHHHhhcCCcccc--ccchhhHHHHHHHH
Q 016904 158 NIVGTLYQVTGIVAEALRLVLTQVLLQKKGLTLNPITSLYYIAPCSFVFLFVPWYLLEKPMMEV--SQIQFNFWIFFSNA 235 (380)
Q Consensus 158 ~~~G~~l~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 235 (380)
...|+++++.+.+.|++...+.|-+ +. .++.++..+-.+.+.++++...........-. ...+..+..+.+++
T Consensus 5 ~~~Gil~~l~Ay~lwG~lp~y~kll-~~----~~~~eIlahRviwS~~~~l~ll~~~r~~~~~~~~~~~p~~~~~~~l~a 79 (293)
T COG2962 5 SRKGILLALLAYLLWGLLPLYFKLL-EP----LPATEILAHRVIWSFPFMLALLFLLRQWRELKQLLKQPKTLLMLALTA 79 (293)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHH-cc----CCHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhCcHHHHHHHHHH
Confidence 3469999999999999988888766 33 68899999998888877766655432221111 11112233344444
Q ss_pred HHHHHHHHHHHHHHhhcchhHHHHhhhhhhHHHHHHHHHhcCCCCcchhhhHHHHHHHHHHHHHHHh
Q 016904 236 LCALALNFSIFLVIGRTGAVTIRVAGVLKDWILIALSTVIFPESTITGLNIIGYAIALCGVVMYNYI 302 (380)
Q Consensus 236 ~~~~~~~~~~~~~i~~~~a~~~s~~~~l~~v~~~~~~~l~~~~~~~~~~~~~G~~lii~g~~~~~~~ 302 (380)
..-..-...+.|++.+-....+|.=.+++|.+.+++|.+++ +|+++..|++..++..+|+..-.+.
T Consensus 80 ~li~~nW~lfiWAvn~g~~leaSLGY~InPL~~VllG~lfl-kErls~~Q~iAV~lA~~GV~~~~~~ 145 (293)
T COG2962 80 LLIGLNWWLFIWAVNNGHVLEASLGYFINPLVNVLLGRLFL-KERLSRLQWIAVGLAAAGVLIQTWL 145 (293)
T ss_pred HHHHHHHHHhheecCCCchhHHHhHHHHHHHHHHHHHHHHH-HhhccHHHHHHHHHHHHHHHHHHHH
Confidence 44444444567789998999999999999999999999999 6679999999999999999865543
No 61
>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional
Probab=97.84 E-value=0.00092 Score=52.32 Aligned_cols=59 Identities=12% Similarity=0.079 Sum_probs=51.8
Q ss_pred HHHHHHHHHhhcchhHHHHhhhhhhHHHHHHHHHhcCCCCcchhhhHHHHHHHHHHHHHH
Q 016904 241 LNFSIFLVIGRTGAVTIRVAGVLKDWILIALSTVIFPESTITGLNIIGYAIALCGVVMYN 300 (380)
Q Consensus 241 ~~~~~~~~i~~~~a~~~s~~~~l~~v~~~~~~~l~~~~~~~~~~~~~G~~lii~g~~~~~ 300 (380)
..+++..++++.+...+...-.+.++.+.++|+++| +|++++.+++|.+++++|+.+..
T Consensus 50 ~~~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f-~E~ls~~~~~Gi~lii~Gv~~i~ 108 (111)
T PRK15051 50 AMVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLW-HEPVSPRHWCGVAFIIGGIVILG 108 (111)
T ss_pred HHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHh-CCCCCHHHHHHHHHHHHHHHHHh
Confidence 344566789999999998888899999999999999 77799999999999999998753
No 62
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=97.79 E-value=0.00046 Score=63.93 Aligned_cols=126 Identities=10% Similarity=0.009 Sum_probs=86.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCcHHHHHHHHHH----HHHHHHHHHHHHhhccCCCcccHHhhhHHhhhHH
Q 016904 12 TYLYLLIYILLSSGVILYNKWVLSPKYFNFPFPITLTMIHMG----FSGVVAFFLVRVFKVVSPVKMTFEIYATCVVPIS 87 (380)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~k~~l~~~~~~~~~p~~~~~~r~~----~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (380)
..+..++..+.........|.. +++ |...++.++. .+.++..++ + +.++ ...+. .+..+..|
T Consensus 153 Gi~~~l~sg~~y~~~~~~~~~~------~~~-~~~~~~~~~~g~~~~~~~~~~~~----~-~~~~-~~~~~-~~~~~~~G 218 (290)
T TIGR00776 153 GILLLLMSTIGYLVYVVVAKAF------GVD-GLSVLLPQAIGMVIGGIIFNLGH----I-LAKP-LKKYA-ILLNILPG 218 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHc------CCC-cceehhHHHHHHHHHHHHHHHHH----h-cccc-hHHHH-HHHHHHHH
Confidence 3334444444444455566643 244 7767555554 333333222 1 1111 12333 23344477
Q ss_pred HHHHHHHHHHhhhhh-cccHhHHHHHHHHHHHHHHHHHHHhccccccHhHH----HHHHHHHhhhheee
Q 016904 88 AFFASSLWFGNTAYL-HISVAFIQMLKALMPVATFFMAVLCGTDKARLDVF----LNMVLVSVGVVISS 151 (380)
Q Consensus 88 ~~~~~~~~~~~~al~-~~~~~~~~il~~~~pi~v~ll~~~~l~ek~~~~~~----~~v~l~~~Gv~l~~ 151 (380)
++....+.++..+.+ +.+++.+.++.+..|+...+++++++||+.+++++ +|.++.+.|+.+..
T Consensus 219 i~~~ia~~~y~~~~~~~~~~~~~~~ls~~~pvia~~~~v~~l~E~~~~~~~~~~~iG~~lIi~~~~l~~ 287 (290)
T TIGR00776 219 LMWGIGNFFYLFSAQPKVGVATSFSLSQLGVIISTLGGILILGEKKTKREMIAISVGIILIIIAANILG 287 (290)
T ss_pred HHHHHHHHHHHHHcccccchhhHHHHHHHHHHHHHHHHHHHhccCCCcceeehhHHHHHHHHHHHHHHh
Confidence 778888899999999 99999999999999999999999999999999999 99999999988754
No 63
>PRK10452 multidrug efflux system protein MdtJ; Provisional
Probab=97.77 E-value=0.00015 Score=57.24 Aligned_cols=70 Identities=16% Similarity=0.148 Sum_probs=62.4
Q ss_pred hhHHHHHHHHHHHHhhhhhcccHhHHHHHH-HHHHHHHHHHHHHhccccccHhHHHHHHHHHhhhheeeec
Q 016904 84 VPISAFFASSLWFGNTAYLHISVAFIQMLK-ALMPVATFFMAVLCGTDKARLDVFLNMVLVSVGVVISSYG 153 (380)
Q Consensus 84 ~~~~~~~~~~~~~~~~al~~~~~~~~~il~-~~~pi~v~ll~~~~l~ek~~~~~~~~v~l~~~Gv~l~~~~ 153 (380)
+...++++.+.++...+++++|.+.+..+- ....+.+.++++++++|+++..+++++.+.++|++++...
T Consensus 34 ~~~i~~~~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~~~~gi~lIi~GVi~l~l~ 104 (120)
T PRK10452 34 ILMLVMISLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLMKIAGLTTLVAGIVLIKSG 104 (120)
T ss_pred HHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhcC
Confidence 455667888899999999999999988885 6899999999999999999999999999999999887543
No 64
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=97.74 E-value=9.8e-06 Score=70.42 Aligned_cols=218 Identities=15% Similarity=0.129 Sum_probs=152.3
Q ss_pred CCcccHHhhhHHhhhHHHHHHHHHHHHhhhhhcccHhHHHHHH-HHHHHHHHHHHHHhccccccHhH----HHHHHHHHh
Q 016904 71 PVKMTFEIYATCVVPISAFFASSLWFGNTAYLHISVAFIQMLK-ALMPVATFFMAVLCGTDKARLDV----FLNMVLVSV 145 (380)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~il~-~~~pi~v~ll~~~~l~ek~~~~~----~~~v~l~~~ 145 (380)
.+..+++. +..-+..|++...++..++.|++++.++.+.=+. .+.-+-+.+++++.++|-.+..+ .+++++.++
T Consensus 51 ~p~~T~~~-~iv~~isG~~Ws~GQ~~Qfka~~~iGVSkamPiStG~QLVg~sL~gV~~f~EW~t~~~~IlG~iAlilivi 129 (288)
T COG4975 51 SPELTLTI-FIVGFISGAFWSFGQANQFKAIQLIGVSKAMPISTGMQLVGTSLFGVFVFHEWTTPTQIILGFIALILIVI 129 (288)
T ss_pred cCccchhh-HHHHHHhhhHhhhhhhhhhhheeeeeeeccccccchhhHhhceeeeEEEEeccCcchhHHHHHHHHHHHHH
Confidence 34445555 5667788999999999999999999988876554 45677888999999999887766 467888899
Q ss_pred hhheeeeccce--------ehHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 016904 146 GVVISSYGEIH--------FNIVGTLYQVTGIVAEALRLVLTQVLLQKKGLTLNPITSLYYIAPCSFVFLFVPWYLLEKP 217 (380)
Q Consensus 146 Gv~l~~~~~~~--------~~~~G~~l~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~ 217 (380)
|+.+-++.|.+ .--.|+...+.|.+.|-.|.++.+... .+.+....-+..-..+.-+......+..
T Consensus 130 G~~lTs~~~~~nk~~~~~~n~kkgi~~L~iSt~GYv~yvvl~~~f~------v~g~saiLPqAiGMv~~ali~~~~~~~~ 203 (288)
T COG4975 130 GIYLTSKQDRNNKEEENPSNLKKGIVILLISTLGYVGYVVLFQLFD------VDGLSAILPQAIGMVIGALILGFFKMEK 203 (288)
T ss_pred hheEeeeeccccccccChHhhhhheeeeeeeccceeeeEeeecccc------ccchhhhhHHHHHHHHHHHHHhhccccc
Confidence 99998886531 123688999999999999998887651 3444444433322211112222211111
Q ss_pred ccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHhhhhhhHHHHHHHHHhcCCCCcchh----hhHHHHHHH
Q 016904 218 MMEVSQIQFNFWIFFSNALCALALNFSIFLVIGRTGAVTIRVAGVLKDWILIALSTVIFPESTITGL----NIIGYAIAL 293 (380)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~a~~~s~~~~l~~v~~~~~~~l~~~~~~~~~~----~~~G~~lii 293 (380)
...-..|.-+..|+.-...|...+.+-++.+-.+.=.+..+.-+++++-|.+++ +|+-|.. -++|.++++
T Consensus 204 -----~~~K~t~~nii~G~~Wa~GNl~ml~a~~~~GvAt~FSlSQlgViisTiGGIl~L-~ekKtkkEm~~v~iGiiliv 277 (288)
T COG4975 204 -----RFNKYTWLNIIPGLIWAIGNLFMLLAAQKVGVATSFSLSQLGVIISTIGGILFL-GEKKTKKEMVYVIIGIILIV 277 (288)
T ss_pred -----chHHHHHHHHhhHHHHHhhHHHHHHhhhhhceeeeeeHhhheeeeeecceEEEE-eccCchhhhhhhhhhHHHHH
Confidence 122334555666777777888887788888777766777788899999999999 5556654 467888888
Q ss_pred HHHHHHHH
Q 016904 294 CGVVMYNY 301 (380)
Q Consensus 294 ~g~~~~~~ 301 (380)
+|..+...
T Consensus 278 vgai~lg~ 285 (288)
T COG4975 278 VGAILLGI 285 (288)
T ss_pred HHhhhhhe
Confidence 88776543
No 65
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=97.73 E-value=0.0009 Score=62.41 Aligned_cols=128 Identities=10% Similarity=0.050 Sum_probs=91.2
Q ss_pred HHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHHHHHhhcCCccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhc
Q 016904 173 ALRLVLTQVLLQKKGLTLNPITSLYYIAPCSFVFLFVPWYLLEKPMMEVSQIQFNFWIFFSNALCALALNFSIFLVIGRT 252 (380)
Q Consensus 173 a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 252 (380)
..+.++++++.++....-.+..+++.+....++...+............ ..+.-....+++.+....+.+.+++++
T Consensus 13 ~~~g~~qE~i~~~~~~~~~~~~lt~~q~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~al~~i 88 (303)
T PF08449_consen 13 CSYGILQEKIMTTPYGSPFPLFLTFVQFAFNALFSFILLSLFKFPKSRK----IPLKKYAILSFLFFLASVLSNAALKYI 88 (303)
T ss_pred HHHHHHHHHHHcCCCCCcccHHHHHHHHHHHHHHHHHHHHhccccCCCc----ChHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3455788888776543324677777777777666555444332111111 112222333566666667788899999
Q ss_pred chhHHHHhhhhhhHHHHHHHHHhcCCCCcchhhhHHHHHHHHHHHHHHHhhhh
Q 016904 253 GAVTIRVAGVLKDWILIALSTVIFPESTITGLNIIGYAIALCGVVMYNYIKVK 305 (380)
Q Consensus 253 ~a~~~s~~~~l~~v~~~~~~~l~~~~~~~~~~~~~G~~lii~g~~~~~~~~~~ 305 (380)
+..+..+....+++++.+++.+++ +++.+..++++..++.+|+.+....+.+
T Consensus 89 ~~p~~~~~ks~~~i~vmi~~~l~~-~k~y~~~~~~~v~li~~Gv~~~~~~~~~ 140 (303)
T PF08449_consen 89 SYPTQIVFKSSKPIPVMILGVLIL-GKRYSRRQYLSVLLITIGVAIFTLSDSS 140 (303)
T ss_pred ChHHHHHHhhhHHHHHHHHHHHhc-CccccHHHHHHHHHHHhhHheeeecccc
Confidence 999999999999999999999999 7779999999999999999998776543
No 66
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=97.68 E-value=0.0031 Score=57.86 Aligned_cols=138 Identities=14% Similarity=0.094 Sum_probs=94.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHHHHHhhcCCccccccchhhHHHHHHHHHHH
Q 016904 159 IVGTLYQVTGIVAEALRLVLTQVLLQKKGLTLNPITSLYYIAPCSFVFLFVPWYLLEKPMMEVSQIQFNFWIFFSNALCA 238 (380)
Q Consensus 159 ~~G~~l~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (380)
..+....+..++.|+......+..... ..+...........+.+...+.... +. ...........+..+.+++..
T Consensus 6 ~~~~~~~l~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~ 80 (292)
T COG0697 6 LLGLLALLLWGLLWGLSFIALKLAVES---LDPFLFAAALRFLIAALLLLPLLLL-EP-RGLRPALRPWLLLLLLALLGL 80 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcc---cCChHHHHHHHHHHHHHHHHHHHHh-hc-ccccccccchHHHHHHHHHHH
Confidence 457777888888999888888876554 1344555554555555442222221 11 001111111234455555666
Q ss_pred HHHHHHHHHHHhhcchhHHHHhhhhhhHHHHHHHH-HhcCCCCcchhhhHHHHHHHHHHHHHHHh
Q 016904 239 LALNFSIFLVIGRTGAVTIRVAGVLKDWILIALST-VIFPESTITGLNIIGYAIALCGVVMYNYI 302 (380)
Q Consensus 239 ~~~~~~~~~~i~~~~a~~~s~~~~l~~v~~~~~~~-l~~~~~~~~~~~~~G~~lii~g~~~~~~~ 302 (380)
...+.+++.+++++++..+....+..|+++.++++ +++ +|+++..+++|..+.+.|+.+....
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~-~e~~~~~~~~~~~~~~~Gv~lv~~~ 144 (292)
T COG0697 81 ALPFLLLFLALKYTSASVASLIIGLLPLFTALLAVLLLL-GERLSLLQILGILLALAGVLLILLG 144 (292)
T ss_pred HHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHc-cCCCcHHHHHHHHHHHHhHHheecC
Confidence 66667788889999999999999999999999997 776 6679999999999999999987653
No 67
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=97.62 E-value=0.0017 Score=57.05 Aligned_cols=131 Identities=9% Similarity=-0.017 Sum_probs=89.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCcHHHHHHHHHHHHHHHHHHHHHHhhccCCCcccHHhhhHHhhhHHHHH
Q 016904 11 LTYLYLLIYILLSSGVILYNKWVLSPKYFNFPFPITLTMIHMGFSGVVAFFLVRVFKVVSPVKMTFEIYATCVVPISAFF 90 (380)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~k~~l~~~~~~~~~p~~~~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (380)
..+++.+..+.+|..+++..|.+-. .-+ --.=+..-++++.++.+++..... ...-.++.. ...-+..+++.
T Consensus 148 ~Gv~~Al~AG~~Wa~YIv~G~r~g~----~~~-g~~g~a~gm~vAaviv~Pig~~~a--g~~l~~p~l-l~laLgvavlS 219 (292)
T COG5006 148 VGVALALGAGACWALYIVLGQRAGR----AEH-GTAGVAVGMLVAALIVLPIGAAQA--GPALFSPSL-LPLALGVAVLS 219 (292)
T ss_pred HHHHHHHHHhHHHHHHHHHcchhcc----cCC-CchHHHHHHHHHHHHHhhhhhhhc--chhhcChHH-HHHHHHHHHHh
Confidence 4555666777777777777776664 222 222344556667777777654211 111222222 22222333332
Q ss_pred -HHHHHHHhhhhhcccHhHHHHHHHHHHHHHHHHHHHhccccccHhHHHHHHHHHhhhhe
Q 016904 91 -ASSLWFGNTAYLHISVAFIQMLKALMPVATFFMAVLCGTDKARLDVFLNMVLVSVGVVI 149 (380)
Q Consensus 91 -~~~~~~~~~al~~~~~~~~~il~~~~pi~v~ll~~~~l~ek~~~~~~~~v~l~~~Gv~l 149 (380)
.+.+.+.-.+++..|...+.++.++.|.+.++.++++++|.++..||+++...+++.+-
T Consensus 220 SalPYsLEmiAL~rlp~~~F~~LlSLePa~aAl~G~i~L~e~ls~~qwlaI~~ViaAsaG 279 (292)
T COG5006 220 SALPYSLEMIALRRLPARTFGTLLSLEPALAALSGLIFLGETLTLIQWLAIAAVIAASAG 279 (292)
T ss_pred cccchHHHHHHHhhCChhHHHHHHHhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhc
Confidence 34667888899999999999999999999999999999999999999999998887763
No 68
>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins.
Probab=97.59 E-value=0.0043 Score=50.55 Aligned_cols=132 Identities=18% Similarity=0.342 Sum_probs=91.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHHHHHhhcCCccccccchhhHHHHHHHHHHHHHH
Q 016904 162 TLYQVTGIVAEALRLVLTQVLLQKKGLTLNPITSLYYIAPCSFVFLFVPWYLLEKPMMEVSQIQFNFWIFFSNALCALAL 241 (380)
Q Consensus 162 ~~l~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (380)
.++++.+.++-+.+..+..++.++- -+|..........+.+.+.......+.+... ......+|. ..+|+++...
T Consensus 3 ~lla~~aG~~i~~q~~~N~~L~~~~---gs~~~as~i~~~~G~i~~~i~~~~~~~~~~~-~~~~~p~w~-~lGG~lG~~~ 77 (138)
T PF04657_consen 3 ILLALLAGALIALQAAFNGQLGKAL---GSPLVASFISFGVGFILLLIILLITGRPSLA-SLSSVPWWA-YLGGLLGVFF 77 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh---CccHHHHHHHHHHHHHHHHHHHHHhcccccc-hhccCChHH-hccHHHHHHH
Confidence 5677888888888888888886653 1588888888888888887777666554222 111222333 4478888877
Q ss_pred HHHHHHHHhhcchhHHHHhhhhhhHHH-HHHHHH-hc--CCCCcchhhhHHHHHHHHHHHH
Q 016904 242 NFSIFLVIGRTGAVTIRVAGVLKDWIL-IALSTV-IF--PESTITGLNIIGYAIALCGVVM 298 (380)
Q Consensus 242 ~~~~~~~i~~~~a~~~s~~~~l~~v~~-~~~~~l-~~--~~~~~~~~~~~G~~lii~g~~~ 298 (380)
-.+....+++.++.........-.+++ .+++.+ .| ..+++++.+++|.+++++|+.+
T Consensus 78 V~~~~~~vp~lG~~~~~~l~~~GQl~~sl~iD~fG~fg~~~~~~~~~r~lG~~l~i~Gv~L 138 (138)
T PF04657_consen 78 VLSNIILVPRLGAALTTILIVAGQLIASLLIDHFGLFGAPKRPFSLRRILGLALMIAGVIL 138 (138)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCHHHHHHHHHHHHHHhC
Confidence 777778899999988877766654444 444442 12 2346899999999999999863
No 69
>KOG2922 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.59 E-value=0.0006 Score=61.96 Aligned_cols=69 Identities=19% Similarity=0.101 Sum_probs=62.4
Q ss_pred hHHHHHHHHHHHHhhhhhcccHhHHHHHHHHHHHHHHHHHHHhccccccHhHHHHHHHHHhhhheeeec
Q 016904 85 PISAFFASSLWFGNTAYLHISVAFIQMLKALMPVATFFMAVLCGTDKARLDVFLNMVLVSVGVVISSYG 153 (380)
Q Consensus 85 ~~~~~~~~~~~~~~~al~~~~~~~~~il~~~~pi~v~ll~~~~l~ek~~~~~~~~v~l~~~Gv~l~~~~ 153 (380)
.+-+.+..+-...+.|+.+.|.+..+-+-++..+..++++..++|||++..-.+|..++++|-.+++..
T Consensus 69 ~G~ltm~vGei~NFaAYaFAPasLVtPLGAlsvi~saila~~~L~Ekl~~~g~lGc~l~v~Gst~iV~h 137 (335)
T KOG2922|consen 69 AGMLTMIVGEIANFAAYAFAPASLVTPLGALSVIISAILASFFLKEKLNLLGILGCVLCVVGSTTIVIH 137 (335)
T ss_pred HHHHHHHHHhHhhHHHHhhchHhhhccchhHHHHHHHHHHHHHHHHHHHHhhhhheeEEecccEEEEEe
Confidence 344567778888999999999999999999999999999999999999999999999999998877764
No 70
>PRK09541 emrE multidrug efflux protein; Reviewed
Probab=97.54 E-value=0.0012 Score=51.44 Aligned_cols=68 Identities=13% Similarity=0.196 Sum_probs=60.1
Q ss_pred hHHHHHHHHHHHHhhhhhcccHhHHHHHH-HHHHHHHHHHHHHhccccccHhHHHHHHHHHhhhheeee
Q 016904 85 PISAFFASSLWFGNTAYLHISVAFIQMLK-ALMPVATFFMAVLCGTDKARLDVFLNMVLVSVGVVISSY 152 (380)
Q Consensus 85 ~~~~~~~~~~~~~~~al~~~~~~~~~il~-~~~pi~v~ll~~~~l~ek~~~~~~~~v~l~~~Gv~l~~~ 152 (380)
...+++....++...+++.+|.+.+..+. ....+.+.+.++++++|++++.+++++.+.++|++++..
T Consensus 35 ~~~~~~~~sf~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~~~~~gi~lIi~GVi~l~l 103 (110)
T PRK09541 35 GTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLVINL 103 (110)
T ss_pred HHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 44567778888889999999999988885 478899999999999999999999999999999998754
No 71
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=97.54 E-value=0.0027 Score=59.49 Aligned_cols=141 Identities=13% Similarity=0.160 Sum_probs=90.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHHHHHhhcCCccccccchhhHHHHHHHHHHH
Q 016904 159 IVGTLYQVTGIVAEALRLVLTQVLLQKKGLTLNPITSLYYIAPCSFVFLFVPWYLLEKPMMEVSQIQFNFWIFFSNALCA 238 (380)
Q Consensus 159 ~~G~~l~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (380)
+.+++++-.-++|-+...+.+..+.++ +.+.+.. ..+.....-.+...+......+...........+|--++-+++=
T Consensus 12 ~~~~~lgQ~lsl~~~~t~~~s~~l~~~-~~~~P~~-Qs~~~Y~~l~~vy~~~~~~r~~~~~~~~~~~~~~w~y~lla~~D 89 (334)
T PF06027_consen 12 WIVLLLGQVLSLCITGTGTFSSLLANK-GVNIPTF-QSFFNYVLLALVYTPILLYRRGFKKWLKVLKRPWWKYFLLALLD 89 (334)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHhc-CccCcHH-HHHHHHHHHHHHHhhhhhhccccccchhhcchhHHHHHHHHHHH
Confidence 344555555555555555556665444 3443433 33333333333333333322221111111112234333346777
Q ss_pred HHHHHHHHHHHhhcchhHHHHhhhhhhHHHHHHHHHhcCCCCcchhhhHHHHHHHHHHHHHHHh
Q 016904 239 LALNFSIFLVIGRTGAVTIRVAGVLKDWILIALSTVIFPESTITGLNIIGYAIALCGVVMYNYI 302 (380)
Q Consensus 239 ~~~~~~~~~~i~~~~a~~~s~~~~l~~v~~~~~~~l~~~~~~~~~~~~~G~~lii~g~~~~~~~ 302 (380)
...|+....+.++++.+.+.++.....+++.+++++++ .+++++.|++|+.++++|+.+....
T Consensus 90 v~aN~~~v~a~~yTsvtS~~lL~~~~i~~~~~LS~~fL-~~ry~~~~~~gv~i~i~Gv~lv~~s 152 (334)
T PF06027_consen 90 VEANYLVVLAYQYTSVTSVQLLDCTSIPFVMILSFIFL-KRRYSWFHILGVLICIAGVVLVVVS 152 (334)
T ss_pred HHHHHHHHHHhhcccHhHHHhhhhhhhHHHHHHHHHHH-HhhhhHHHHHHHHHHHhhhhheeee
Confidence 88899999999999999999999999999999999999 6679999999999999999886654
No 72
>PRK10650 multidrug efflux system protein MdtI; Provisional
Probab=97.53 E-value=0.0016 Score=50.45 Aligned_cols=67 Identities=15% Similarity=0.070 Sum_probs=58.4
Q ss_pred hhHHHHHHHHHHHHhhhhhcccHhHHHHHHH-HHHHHHHHHHHHhccccccHhHHHHHHHHHhhhhee
Q 016904 84 VPISAFFASSLWFGNTAYLHISVAFIQMLKA-LMPVATFFMAVLCGTDKARLDVFLNMVLVSVGVVIS 150 (380)
Q Consensus 84 ~~~~~~~~~~~~~~~~al~~~~~~~~~il~~-~~pi~v~ll~~~~l~ek~~~~~~~~v~l~~~Gv~l~ 150 (380)
+....++....++...+++.+|.+.+-.+-. ...+.+.+.+++++||++++.+++++.+.++|++.+
T Consensus 39 ~~~~~~~~~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~~~~gi~lIi~GVi~l 106 (109)
T PRK10650 39 ILSLAAVLAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRKGWIGLVLLLAGMVMI 106 (109)
T ss_pred HHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHh
Confidence 3445667778888999999999999777765 778999999999999999999999999999999875
No 73
>PRK11431 multidrug efflux system protein; Provisional
Probab=97.53 E-value=0.0017 Score=50.06 Aligned_cols=68 Identities=12% Similarity=0.081 Sum_probs=59.6
Q ss_pred hhHHHHHHHHHHHHhhhhhcccHhHHHHHHH-HHHHHHHHHHHHhccccccHhHHHHHHHHHhhhheee
Q 016904 84 VPISAFFASSLWFGNTAYLHISVAFIQMLKA-LMPVATFFMAVLCGTDKARLDVFLNMVLVSVGVVISS 151 (380)
Q Consensus 84 ~~~~~~~~~~~~~~~~al~~~~~~~~~il~~-~~pi~v~ll~~~~l~ek~~~~~~~~v~l~~~Gv~l~~ 151 (380)
+....++..+.++...+++.+|.+.+-.+-. ...+.+.+.+++++||++++.+++++.+.++|++.+.
T Consensus 33 ~~~i~~~~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~~~~gi~lIi~GVv~l~ 101 (105)
T PRK11431 33 IITVTAMIVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPARLLSLALIVAGIIGLK 101 (105)
T ss_pred HHHHHHHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhh
Confidence 3445677888889999999999999877765 7889999999999999999999999999999998764
No 74
>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]
Probab=97.52 E-value=0.0011 Score=50.63 Aligned_cols=69 Identities=17% Similarity=0.152 Sum_probs=59.5
Q ss_pred hhHHHHHHHHHHHHhhhhhcccHhHHHHHH-HHHHHHHHHHHHHhccccccHhHHHHHHHHHhhhheeee
Q 016904 84 VPISAFFASSLWFGNTAYLHISVAFIQMLK-ALMPVATFFMAVLCGTDKARLDVFLNMVLVSVGVVISSY 152 (380)
Q Consensus 84 ~~~~~~~~~~~~~~~~al~~~~~~~~~il~-~~~pi~v~ll~~~~l~ek~~~~~~~~v~l~~~Gv~l~~~ 152 (380)
+...+++..+.++...+++++|.+.+-.+- ..-.+.+.+.++++++|+++..+++++.+.++|++.+-.
T Consensus 34 il~~v~~~~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~~~~gl~LiiaGvi~Lk~ 103 (106)
T COG2076 34 ILTIVGYGLSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLIKLLGLALILAGVIGLKL 103 (106)
T ss_pred HHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHHHHhhh
Confidence 445567778888999999999999876665 467889999999999999999999999999999987644
No 75
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=97.35 E-value=0.0065 Score=54.84 Aligned_cols=68 Identities=13% Similarity=0.101 Sum_probs=57.9
Q ss_pred HHhhhHHHHHHHHHHHHhhhhhcccHhHHHHHHHHHHHHHHHHHHHhccccccHhHHH----HHHHHHhhhh
Q 016904 81 TCVVPISAFFASSLWFGNTAYLHISVAFIQMLKALMPVATFFMAVLCGTDKARLDVFL----NMVLVSVGVV 148 (380)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~al~~~~~~~~~il~~~~pi~v~ll~~~~l~ek~~~~~~~----~v~l~~~Gv~ 148 (380)
++-+..|+.++.++.++..+.+....+.+-.+..+.++...+.+.+++||+-+++++. |+++.++|.+
T Consensus 196 ~~nil~G~~w~ignl~~~is~~~~G~a~af~lSQ~~vvIStlgGI~il~E~Kt~ke~~~~~~G~~Liv~G~i 267 (269)
T PF06800_consen 196 WKNILTGLIWGIGNLFYLISAQKNGVATAFTLSQLGVVISTLGGIFILKEKKTKKEMIYTLIGLILIVIGAI 267 (269)
T ss_pred HHhhHHHHHHHHHHHHHHHhHHhccchhhhhHHhHHHHHHHhhhheEEEecCchhhHHHHHHHHHHHHHhhh
Confidence 4446779999999999999999999999999999999999999999999998888754 4555555554
No 76
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=97.15 E-value=0.0014 Score=58.83 Aligned_cols=132 Identities=16% Similarity=0.153 Sum_probs=84.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHHHHHhhcCCccccccchhhHHHHHHHHHHHHH
Q 016904 161 GTLYQVTGIVAEALRLVLTQVLLQKKGLTLNPITSLYYIAPCSFVFLFVPWYLLEKPMMEVSQIQFNFWIFFSNALCALA 240 (380)
Q Consensus 161 G~~l~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (380)
|.+..++|+++++...|=.||.- +.|++-..++++....+..+......+.+.+ ..+.+++|.+-..
T Consensus 1 G~~a~~va~~~fGs~~vPvK~~~-----~gDg~~fQw~~~~~i~~~g~~v~~~~~~p~f--------~p~amlgG~lW~~ 67 (254)
T PF07857_consen 1 GYIACIVAVLFFGSNFVPVKKFD-----TGDGFFFQWVMCSGIFLVGLVVNLILGFPPF--------YPWAMLGGALWAT 67 (254)
T ss_pred CchhHHHHHHHhcccceeeEecc-----CCCcHHHHHHHHHHHHHHHHHHHHhcCCCcc--------eeHHHhhhhhhhc
Confidence 56778899999998888777652 2377777777766554444444444333322 1223445666666
Q ss_pred HHHHHHHHHhhcch-hHHHHhhhhhhHHHHHHHHH-hcCCCC----cchhhhHHHHHHHHHHHHHHHhhhh
Q 016904 241 LNFSIFLVIGRTGA-VTIRVAGVLKDWILIALSTV-IFPEST----ITGLNIIGYAIALCGVVMYNYIKVK 305 (380)
Q Consensus 241 ~~~~~~~~i~~~~a-~~~s~~~~l~~v~~~~~~~l-~~~~~~----~~~~~~~G~~lii~g~~~~~~~~~~ 305 (380)
.|.+..-.++.++- .-..+.+..+-+.+...|-+ +||.++ -.+++++|.+++++|..++...|..
T Consensus 68 gN~~~vpii~~iGLglg~liW~s~n~l~Gw~~grfGlFg~~~~~~~~~~Ln~~G~~l~~~~~~~f~fik~~ 138 (254)
T PF07857_consen 68 GNILVVPIIKTIGLGLGMLIWGSVNCLTGWASGRFGLFGLDPQVPSSPWLNYIGVALVLVSGIIFSFIKSE 138 (254)
T ss_pred CceeehhHhhhhhhHHHHHHHHHHHHHHHHHHhhceeccccccccchhHHHHHHHHHHHHHHHheeeecCC
Confidence 66666666777653 33445566666777777654 563321 3578999999999999998765543
No 77
>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins.
Probab=97.05 E-value=0.042 Score=44.75 Aligned_cols=120 Identities=11% Similarity=0.094 Sum_probs=83.3
Q ss_pred HHHHHHHHHHhcCCCcCCCcHHHHHHHHHHHHHHHHHHHHHHhhccCCCcccHHhhhHHhhhHHHHHHHHHHHHhhhhhc
Q 016904 24 SGVILYNKWVLSPKYFNFPFPITLTMIHMGFSGVVAFFLVRVFKVVSPVKMTFEIYATCVVPISAFFASSLWFGNTAYLH 103 (380)
Q Consensus 24 ~~~~~~~k~~l~~~~~~~~~p~~~~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~ 103 (380)
......|-.+-+ ....|+.-++.-+..+.+.+..+....++.+..+.+.- .+.....|++......+..+....
T Consensus 14 ~~q~~~N~~L~~----~~gs~~~as~i~~~~G~i~~~i~~~~~~~~~~~~~~~~--p~w~~lGG~lG~~~V~~~~~~vp~ 87 (138)
T PF04657_consen 14 ALQAAFNGQLGK----ALGSPLVASFISFGVGFILLLIILLITGRPSLASLSSV--PWWAYLGGLLGVFFVLSNIILVPR 87 (138)
T ss_pred HHHHHHHHHHHH----HhCccHHHHHHHHHHHHHHHHHHHHHhcccccchhccC--ChHHhccHHHHHHHHHHHHHHhhh
Confidence 333444444444 34349999999999999988877766554322222211 233344788888888888889999
Q ss_pred ccHhHHHHHHHH-HHHHHHHHHHH----hccccccHhHHHHHHHHHhhhhe
Q 016904 104 ISVAFIQMLKAL-MPVATFFMAVL----CGTDKARLDVFLNMVLVSVGVVI 149 (380)
Q Consensus 104 ~~~~~~~il~~~-~pi~v~ll~~~----~l~ek~~~~~~~~v~l~~~Gv~l 149 (380)
++++.+.++.-+ .-+..+++..+ .-|+++++.|++|+++.++|+.+
T Consensus 88 lG~~~~~~l~~~GQl~~sl~iD~fG~fg~~~~~~~~~r~lG~~l~i~Gv~L 138 (138)
T PF04657_consen 88 LGAALTTILIVAGQLIASLLIDHFGLFGAPKRPFSLRRILGLALMIAGVIL 138 (138)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCHHHHHHHHHHHHHHhC
Confidence 998887777655 55556666665 35689999999999999999864
No 78
>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins. They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.
Probab=97.00 E-value=0.0041 Score=46.97 Aligned_cols=58 Identities=16% Similarity=0.197 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHhhhhhcccHhHHHHH-HHHHHHHHHHHHHHhccccccHhHHHHHHHH
Q 016904 86 ISAFFASSLWFGNTAYLHISVAFIQML-KALMPVATFFMAVLCGTDKARLDVFLNMVLV 143 (380)
Q Consensus 86 ~~~~~~~~~~~~~~al~~~~~~~~~il-~~~~pi~v~ll~~~~l~ek~~~~~~~~v~l~ 143 (380)
...+++.+.++...+++++|.+.+-.+ .....+.+.+.+.+++||+++..+++++.+.
T Consensus 35 ~~~~~~~s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~~~~gi~lI 93 (93)
T PF00893_consen 35 AVVGYGLSFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLSKWLGIGLI 93 (93)
T ss_dssp HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--------HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHhheeeC
Confidence 344778888999999999999998665 4689999999999999999999999998864
No 79
>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.88 E-value=0.062 Score=43.95 Aligned_cols=137 Identities=13% Similarity=0.128 Sum_probs=88.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHHHHHhhcCCccccccchhhHHHHHHHHHHH
Q 016904 159 IVGTLYQVTGIVAEALRLVLTQVLLQKKGLTLNPITSLYYIAPCSFVFLFVPWYLLEKPMMEVSQIQFNFWIFFSNALCA 238 (380)
Q Consensus 159 ~~G~~l~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (380)
+...+..+.+.++-..+.-+..++.+.- -+|..........+.+.+.......+............+|. ..+|+++
T Consensus 4 ~l~ll~~i~aG~~l~~Q~~iN~qL~~~~---~spl~As~isf~vGt~~L~~l~l~~~~~~~~a~~~~~pwW~-~~GG~lG 79 (150)
T COG3238 4 YLYLLFAILAGALLPLQAAINGRLARYL---GSPLLASLISFLVGTVLLLILLLIKQGHPGLAAVASAPWWA-WIGGLLG 79 (150)
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHc---CChHHHHHHHHHHHHHHHHHHHHHhcCCCchhhccCCchHH-HHccchh
Confidence 4567888888888888888888886653 25777777777777777776666544332221112222343 4456776
Q ss_pred HHHHHHHHHHHhhcchhHHHHhhhh-hhHHHHHHHHHhcCC---CCcchhhhHHHHHHHHHHHHH
Q 016904 239 LALNFSIFLVIGRTGAVTIRVAGVL-KDWILIALSTVIFPE---STITGLNIIGYAIALCGVVMY 299 (380)
Q Consensus 239 ~~~~~~~~~~i~~~~a~~~s~~~~l-~~v~~~~~~~l~~~~---~~~~~~~~~G~~lii~g~~~~ 299 (380)
..+-........+.++++.-.+... +.+.+.+++.+=+.+ .+++...++|.+++++|+++.
T Consensus 80 a~~vt~s~~l~p~lGa~~t~~l~i~gQli~glliD~fG~~g~~~~~~~~~r~lgi~L~l~gil~~ 144 (150)
T COG3238 80 AIFVTSSILLAPRLGAATTIALVIAGQLIMGLLIDHFGWFGVPKRPLNLPRILGILLVLAGILLA 144 (150)
T ss_pred hhhhhhhHHhccchhHHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCHHHHHHHHHHHHHHHHh
Confidence 6655556667888887766555444 444444444433322 458999999999999996553
No 80
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=96.88 E-value=0.0044 Score=55.71 Aligned_cols=75 Identities=15% Similarity=0.127 Sum_probs=66.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHhhhhhhHHHHHHHHHhcCCCCcchhhhHHHHHHHHHHHHHHHhh
Q 016904 228 FWIFFSNALCALALNFSIFLVIGRTGAVTIRVAGVLKDWILIALSTVIFPESTITGLNIIGYAIALCGVVMYNYIK 303 (380)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~i~~~~a~~~s~~~~l~~v~~~~~~~l~~~~~~~~~~~~~G~~lii~g~~~~~~~~ 303 (380)
.+.....+++-...|.+.+.++++.+|.+..++..++.+++.+++++++ +++++..||++..+..+|+.+.....
T Consensus 17 ~~~~~vPA~lY~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L-~r~ls~~qW~aL~lL~~Gv~lv~~~~ 91 (244)
T PF04142_consen 17 TLKLAVPALLYAIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLL-KRRLSRRQWLALFLLVAGVVLVQLSS 91 (244)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHH-HcccchhhHHHHHHHHHHHheeecCC
Confidence 4555667777777888889999999999999999999999999999999 77799999999999999999866543
No 81
>PRK10452 multidrug efflux system protein MdtJ; Provisional
Probab=96.84 E-value=0.0097 Score=46.99 Aligned_cols=56 Identities=11% Similarity=0.261 Sum_probs=44.4
Q ss_pred HHHHHhhcchh-HHHHhhhhhhHHHHHHHHHhcCCCCcchhhhHHHHHHHHHHHHHHH
Q 016904 245 IFLVIGRTGAV-TIRVAGVLKDWILIALSTVIFPESTITGLNIIGYAIALCGVVMYNY 301 (380)
Q Consensus 245 ~~~~i~~~~a~-~~s~~~~l~~v~~~~~~~l~~~~~~~~~~~~~G~~lii~g~~~~~~ 301 (380)
...++++.+.. ..++..-+..+.++++|+++| +|++++.+++|+++|++|+...+.
T Consensus 47 ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f-~E~~s~~~~~gi~lIi~GVi~l~l 103 (120)
T PRK10452 47 LSFAVKKIALGVAYALWEGIGILFITLFSVLLF-DESLSLMKIAGLTTLVAGIVLIKS 103 (120)
T ss_pred HHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHh-CCCCCHHHHHHHHHHHHHHHHhhc
Confidence 44566776543 345556678888999999999 778999999999999999988654
No 82
>PRK09541 emrE multidrug efflux protein; Reviewed
Probab=96.78 E-value=0.012 Score=45.82 Aligned_cols=55 Identities=16% Similarity=0.118 Sum_probs=43.9
Q ss_pred HHHHhhcchh-HHHHhhhhhhHHHHHHHHHhcCCCCcchhhhHHHHHHHHHHHHHHH
Q 016904 246 FLVIGRTGAV-TIRVAGVLKDWILIALSTVIFPESTITGLNIIGYAIALCGVVMYNY 301 (380)
Q Consensus 246 ~~~i~~~~a~-~~s~~~~l~~v~~~~~~~l~~~~~~~~~~~~~G~~lii~g~~~~~~ 301 (380)
..++++.+.. ..++..-+..+.+++.|+++| +|++++.+++|+++|++|+...+.
T Consensus 48 ~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f-~e~~~~~~~~gi~lIi~GVi~l~l 103 (110)
T PRK09541 48 AQTLAYIPTGIAYAIWSGVGIVLISLLSWGFF-GQRLDLPAIIGMMLICAGVLVINL 103 (110)
T ss_pred HHHHhhCCchhHHHHHHHHHHHHHHHHHHHHh-CCCCCHHHHHHHHHHHHHHHHHhc
Confidence 3456666543 345556678888899999999 778999999999999999998754
No 83
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=96.73 E-value=0.004 Score=57.68 Aligned_cols=142 Identities=10% Similarity=-0.011 Sum_probs=105.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCcHHHHHHHHHHHHHHHHH-HHHHHhhccCC---CcccHHhhhHHhhh
Q 016904 10 VLTYLYLLIYILLSSGVILYNKWVLSPKYFNFPFPITLTMIHMGFSGVVAF-FLVRVFKVVSP---VKMTFEIYATCVVP 85 (380)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~k~~l~~~~~~~~~p~~~~~~r~~~~~~~l~-~~~~~~~~~~~---~~~~~~~~~~~~~~ 85 (380)
+.......++.+....-.++.|.++.+++.+++ ++.+..+.--++.+++. ++......... ...+|.--....+.
T Consensus 162 ~~G~i~a~~s~~~~al~~I~~~~ll~~~~~~~~-~~~ll~y~ap~s~~~Ll~P~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (316)
T KOG1441|consen 162 LFGFISAMISNLAFALRNILSKKLLTSKGESLN-SMNLLYYTAPISLIFLLIPFLDYVEGNKFVGFLTAPWFVTFLILLL 240 (316)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccccccC-chHHHHHhhhHHHHHHhcchHhhhcccceeeeeccccchhhHHHHH
Confidence 456667778888888888899999976678888 88888888888887777 65433222111 11122111223333
Q ss_pred HHHHHHHHHHHHhhhhhcccHhHHHHHHHHHHHHHHHHHHHhccccccHhHHHHHHHHHhhhheeee
Q 016904 86 ISAFFASSLWFGNTAYLHISVAFIQMLKALMPVATFFMAVLCGTDKARLDVFLNMVLVSVGVVISSY 152 (380)
Q Consensus 86 ~~~~~~~~~~~~~~al~~~~~~~~~il~~~~pi~v~ll~~~~l~ek~~~~~~~~v~l~~~Gv~l~~~ 152 (380)
.+++..+.+...++.+..+++-+.++....--+.+.+.+++++++++++.+.+|.++.++|+.+-..
T Consensus 241 ~sv~~f~~Nls~f~~ig~tSalT~~V~g~~K~~~vi~~s~~iF~~pvt~~n~~G~~iai~Gv~~Y~~ 307 (316)
T KOG1441|consen 241 NSVLAFLLNLSAFLVIGRTSALTYSVAGHMKRIVVIVVSWLIFGNPVTFLNALGYAIAILGVFLYSR 307 (316)
T ss_pred HHHHHHHHHHHHHHHHcccCchhhhhhccceEEEEEEeEeeeecCCCchhhHHHHHHHHHHHHHHHH
Confidence 3466666778888999999999999999999999999999999999999999999999999987543
No 84
>PRK13499 rhamnose-proton symporter; Provisional
Probab=96.56 E-value=0.047 Score=51.33 Aligned_cols=139 Identities=13% Similarity=0.059 Sum_probs=88.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHHH--HHhhcCCccc-cc-cchhhHHHHHH
Q 016904 158 NIVGTLYQVTGIVAEALRLVLTQVLLQKKGLTLNPITSLYYIAPCSFVFLFVP--WYLLEKPMME-VS-QIQFNFWIFFS 233 (380)
Q Consensus 158 ~~~G~~l~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~--~~~~~~~~~~-~~-~~~~~~~~~~~ 233 (380)
...|+++.+++++|++-+.+-+|+. |+ -+++...-...+-.-++.|. ..+..+.... .. .....+...++
T Consensus 5 ~~~G~~~~~i~~~~~GS~~~p~K~~-k~-----w~wE~~W~v~gi~~wl~~~~~~g~~~~~~f~~~~~~~~~~~~~~~~l 78 (345)
T PRK13499 5 IILGIIWHLIGGASSGSFYAPFKKV-KK-----WSWETMWSVGGIFSWLILPWLIAALLLPDFWAYYSSFSGSTLLPVFL 78 (345)
T ss_pred hHHHHHHHHHHHHHhhccccccccc-CC-----CchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhcCHHHHHHHHH
Confidence 3579999999999999999988873 43 33444422111111122221 1111111111 11 11223444566
Q ss_pred HHHHHHHHHHHHHHHHhhcchhH-HHHhhhhhhHHHHHHHHHhcCCCCcc--------hhhhHHHHHHHHHHHHHHHhhh
Q 016904 234 NALCALALNFSIFLVIGRTGAVT-IRVAGVLKDWILIALSTVIFPESTIT--------GLNIIGYAIALCGVVMYNYIKV 304 (380)
Q Consensus 234 ~~~~~~~~~~~~~~~i~~~~a~~-~s~~~~l~~v~~~~~~~l~~~~~~~~--------~~~~~G~~lii~g~~~~~~~~~ 304 (380)
+|++-...|..++..+++.+-.. ..+..-++.+.+++++.+++ || ++ ...++|.+++++|+.+..+.-.
T Consensus 79 ~G~~W~iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~-ge-w~~~~~t~~g~~~~~gv~liliGi~l~s~Ag~ 156 (345)
T PRK13499 79 FGALWGIGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIIN-GN-FDVLLATNGGRMTLLGVLVALIGVAIVGRAGQ 156 (345)
T ss_pred HHHHHHhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHc-cc-cccccccchHHHHHHHHHHHHHHHHHHHHhhh
Confidence 78887778888888888876543 45566678899999999999 65 44 4678999999999999887443
No 85
>PRK10650 multidrug efflux system protein MdtI; Provisional
Probab=96.56 E-value=0.083 Score=40.99 Aligned_cols=55 Identities=18% Similarity=0.232 Sum_probs=44.6
Q ss_pred HHHHHhhcch-hHHHHhhhhhhHHHHHHHHHhcCCCCcchhhhHHHHHHHHHHHHHH
Q 016904 245 IFLVIGRTGA-VTIRVAGVLKDWILIALSTVIFPESTITGLNIIGYAIALCGVVMYN 300 (380)
Q Consensus 245 ~~~~i~~~~a-~~~s~~~~l~~v~~~~~~~l~~~~~~~~~~~~~G~~lii~g~~~~~ 300 (380)
...++|+.+. +..++..-+-.+.+.+.|+++| +|++++.+++|+++++.|+...+
T Consensus 52 Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f-~e~~~~~~~~gi~lIi~GVi~lk 107 (109)
T PRK10650 52 LSQAVKGIDLSVAYALWGGFGIAATLAAGWILF-GQRLNRKGWIGLVLLLAGMVMIK 107 (109)
T ss_pred HHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHHHHhc
Confidence 3345666654 3467777888899999999999 77799999999999999998753
No 86
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=96.43 E-value=0.058 Score=47.75 Aligned_cols=66 Identities=11% Similarity=0.002 Sum_probs=58.1
Q ss_pred hhHHHHHHHHHHHHhhhhhcccHhHHHHHHHHHHHHHHHHHHHhccccccHhHHHHHHHHHhhhhe
Q 016904 84 VPISAFFASSLWFGNTAYLHISVAFIQMLKALMPVATFFMAVLCGTDKARLDVFLNMVLVSVGVVI 149 (380)
Q Consensus 84 ~~~~~~~~~~~~~~~~al~~~~~~~~~il~~~~pi~v~ll~~~~l~ek~~~~~~~~v~l~~~Gv~l 149 (380)
....+..+....+..+.++|.+....++...+.++++.++++++++|+++..+++|+.+.+.|+.+
T Consensus 156 ~~~~~~~a~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~~~~g~~lV~~~~~l 221 (222)
T TIGR00803 156 WIVGLLNVGGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISSTFYLGAILVFLATFL 221 (222)
T ss_pred HHHHHHHHhcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHeeeEe
Confidence 334455666677888999999999999999999999999999999999999999999999998754
No 87
>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function. Many members are annotated as potential transmembrane proteins.
Probab=96.37 E-value=0.012 Score=45.82 Aligned_cols=69 Identities=17% Similarity=0.162 Sum_probs=57.1
Q ss_pred HHhhhHHHHHHHHHHHHhhhhhcccHhHHHHHH-HHHHHHHHHHHHHhccccccHhHHHHHHHHHhhhhee
Q 016904 81 TCVVPISAFFASSLWFGNTAYLHISVAFIQMLK-ALMPVATFFMAVLCGTDKARLDVFLNMVLVSVGVVIS 150 (380)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~al~~~~~~~~~il~-~~~pi~v~ll~~~~l~ek~~~~~~~~v~l~~~Gv~l~ 150 (380)
+..++ -+.+-.+...+++.+...+.+.+.-+. +++=+++++.++++.+|..++++++|+++.++|+.+.
T Consensus 43 ~y~ip-f~lNq~GSv~f~~~L~~~dlSlavPi~Nsl~fvfT~l~g~~lge~~~~~~~~~G~~Li~~Gv~Lc 112 (113)
T PF10639_consen 43 KYIIP-FLLNQSGSVLFFLLLGSADLSLAVPIANSLAFVFTALTGWLLGEEVISRRTWLGMALILAGVALC 112 (113)
T ss_pred HHHHH-HHHHHHHHHHHHHHHhcCCceeeehHHhHHHHHHHHHHHHHhcCcccchhHHHHHHHHHcCeeee
Confidence 34444 344556677888899999999988885 8889999999999999999999999999999999864
No 88
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]
Probab=96.32 E-value=0.2 Score=46.59 Aligned_cols=137 Identities=15% Similarity=0.148 Sum_probs=92.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHHHHHhhcCC-----ccc----cccchhhHHHHHH
Q 016904 163 LYQVTGIVAEALRLVLTQVLLQKKGLTLNPITSLYYIAPCSFVFLFVPWYLLEKP-----MME----VSQIQFNFWIFFS 233 (380)
Q Consensus 163 ~l~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~-----~~~----~~~~~~~~~~~~~ 233 (380)
+..+...+-.+......|...++++..+.|.+..+..-++-.++.+...+..+.. ... ....+...+-+..
T Consensus 18 ~~l~~~t~~~~~l~l~l~ys~~~~~~~f~~tt~v~~~Ei~Kl~~c~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~lk~~v 97 (345)
T KOG2234|consen 18 LSLIVLTAQNTALTLLLRYSRTREKPMFLPTTAVFLTEVIKLVFCLFLLLFEERKYAKKSLKSLSKEILAAPRETLKVSV 97 (345)
T ss_pred HHHHHHHHHHhhHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhhcCHHHHhChHHHHHHHH
Confidence 3344444455555555554434444457788888877777766665555443311 000 0111112334444
Q ss_pred HHHHHHHHHHHHHHHHhhcchhHHHHhhhhhhHHHHHHHHHhcCCCCcchhhhHHHHHHHHHHHHHH
Q 016904 234 NALCALALNFSIFLVIGRTGAVTIRVAGVLKDWILIALSTVIFPESTITGLNIIGYAIALCGVVMYN 300 (380)
Q Consensus 234 ~~~~~~~~~~~~~~~i~~~~a~~~s~~~~l~~v~~~~~~~l~~~~~~~~~~~~~G~~lii~g~~~~~ 300 (380)
.+++-..-|-..+...++.+|.+..+...++...+.+++++++ +++++..||...++...|+.+..
T Consensus 98 Pa~iYalqNnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L-~rkLs~~Qw~Al~lL~~Gv~~vQ 163 (345)
T KOG2234|consen 98 PALIYALQNNLQYVALSNLDAATYQVTYQLKILTTAIFSVLIL-RRKLSRLQWMALVLLFAGVALVQ 163 (345)
T ss_pred HHHHHHHhhhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHH-hhhhhHHHHHHHHHHHHHHHHHh
Confidence 5555555666788899999999999999999999999999999 77799999999999999999876
No 89
>PRK11431 multidrug efflux system protein; Provisional
Probab=96.15 E-value=0.061 Score=41.46 Aligned_cols=55 Identities=7% Similarity=0.065 Sum_probs=44.9
Q ss_pred HHHHhhcch-hHHHHhhhhhhHHHHHHHHHhcCCCCcchhhhHHHHHHHHHHHHHHH
Q 016904 246 FLVIGRTGA-VTIRVAGVLKDWILIALSTVIFPESTITGLNIIGYAIALCGVVMYNY 301 (380)
Q Consensus 246 ~~~i~~~~a-~~~s~~~~l~~v~~~~~~~l~~~~~~~~~~~~~G~~lii~g~~~~~~ 301 (380)
..++|+.+. +..++..-+-.+.+.+.|+++| +|++++.+++|+.++++|+...+.
T Consensus 47 s~al~~ip~gvaYAvW~GiG~v~~~lig~~~f-~e~~~~~~~~gi~lIi~GVv~l~l 102 (105)
T PRK11431 47 AWAMKSLPVGTAYAVWTGIGAVGAAITGIVLL-GESASPARLLSLALIVAGIIGLKL 102 (105)
T ss_pred HHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHh-CCCCCHHHHHHHHHHHHHHHhhhc
Confidence 345666543 4567778888899999999999 777999999999999999998643
No 90
>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]
Probab=96.03 E-value=0.069 Score=40.91 Aligned_cols=55 Identities=15% Similarity=0.200 Sum_probs=45.5
Q ss_pred HHHhhcch-hHHHHhhhhhhHHHHHHHHHhcCCCCcchhhhHHHHHHHHHHHHHHHh
Q 016904 247 LVIGRTGA-VTIRVAGVLKDWILIALSTVIFPESTITGLNIIGYAIALCGVVMYNYI 302 (380)
Q Consensus 247 ~~i~~~~a-~~~s~~~~l~~v~~~~~~~l~~~~~~~~~~~~~G~~lii~g~~~~~~~ 302 (380)
.++|+.+- +.+++.+-.-.+.+.+.|+++| +|++++.+++|..++++|+...+..
T Consensus 49 ~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f-~E~l~~~~~~gl~LiiaGvi~Lk~~ 104 (106)
T COG2076 49 LALKTIPLGVAYAIWTGIGIVGTALVGVLLF-GESLSLIKLLGLALILAGVIGLKLG 104 (106)
T ss_pred HHHhhCchHHHHHHHHHHHHHHHHHHHHHhc-CCcCCHHHHHHHHHHHHHHHHhhhc
Confidence 45676653 3467788888889999999999 7789999999999999999987653
No 91
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=95.89 E-value=0.068 Score=49.61 Aligned_cols=118 Identities=19% Similarity=0.166 Sum_probs=80.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHHHHHhhcCCccccccchhhHHHHHHHHHH
Q 016904 158 NIVGTLYQVTGIVAEALRLVLTQVLLQKKGLTLNPITSLYYIAPCSFVFLFVPWYLLEKPMMEVSQIQFNFWIFFSNALC 237 (380)
Q Consensus 158 ~~~G~~l~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (380)
...|++++++++++.+....++|+-..+.+..-.+..-. +..... ...||..+..-..
T Consensus 5 ~~iGv~lav~ss~~~~~g~~lqk~~~~r~~~~~~~~~~~------------~~~~l~----------~~~W~~G~~~~~~ 62 (300)
T PF05653_consen 5 FYIGVLLAVVSSIFIAVGFNLQKKSHLRLPRGSLRAGSG------------GRSYLR----------RPLWWIGLLLMVL 62 (300)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccch------------hhHHHh----------hHHHHHHHHHHhc
Confidence 467999999999999999999999766543210000000 000000 1112222211122
Q ss_pred HHHHHHHHHHHHhhcchhHHHHhhhhhhHHHHHHHHHhcCCCCcchhhhHHHHHHHHHHHHHHH
Q 016904 238 ALALNFSIFLVIGRTGAVTIRVAGVLKDWILIALSTVIFPESTITGLNIIGYAIALCGVVMYNY 301 (380)
Q Consensus 238 ~~~~~~~~~~~i~~~~a~~~s~~~~l~~v~~~~~~~l~~~~~~~~~~~~~G~~lii~g~~~~~~ 301 (380)
+ +...+.++...++...+.++.+.-++..+++..++ +|+++...++|.++++.|..+...
T Consensus 63 g---~~~~~~Al~~ap~slv~Plg~~~lv~~~~~a~~~l-~e~~~~~~~~G~~l~i~G~~liv~ 122 (300)
T PF05653_consen 63 G---EILNFVALGFAPASLVAPLGALSLVFNAVLARFFL-GEKLTRRDIVGCALIILGSVLIVI 122 (300)
T ss_pred c---hHHHHHHHHhhhHHHHHHHHhhhhhhHHHHhHHHh-cccchHhHHhhHHHHHhhheeeEE
Confidence 2 23345567888999999999999999999999999 777999999999999999987543
No 92
>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.88 E-value=0.38 Score=39.39 Aligned_cols=134 Identities=11% Similarity=0.025 Sum_probs=80.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCcCCCcHHHHHHHHHHHHHHHHHHHHHHhhccCCCcccHHhhhHHhhhHHHHHHH
Q 016904 13 YLYLLIYILLSSGVILYNKWVLSPKYFNFPFPITLTMIHMGFSGVVAFFLVRVFKVVSPVKMTFEIYATCVVPISAFFAS 92 (380)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~k~~l~~~~~~~~~p~~~~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (380)
.+..+..+.+.....-.|-.+-. ....|+.-.+.-+.++..++..+.....+.+......+. .+.....|++...
T Consensus 7 ll~~i~aG~~l~~Q~~iN~qL~~----~~~spl~As~isf~vGt~~L~~l~l~~~~~~~~a~~~~~-pwW~~~GG~lGa~ 81 (150)
T COG3238 7 LLFAILAGALLPLQAAINGRLAR----YLGSPLLASLISFLVGTVLLLILLLIKQGHPGLAAVASA-PWWAWIGGLLGAI 81 (150)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHH----HcCChHHHHHHHHHHHHHHHHHHHHHhcCCCchhhccCC-chHHHHccchhhh
Confidence 33445555555555556666655 455599999999999999888887653322222211222 1222344555444
Q ss_pred HHHHHhhhhhcccHhHHH-HHHHHHHHHHHHHHHHhc----cccccHhHHHHHHHHHhhhheee
Q 016904 93 SLWFGNTAYLHISVAFIQ-MLKALMPVATFFMAVLCG----TDKARLDVFLNMVLVSVGVVISS 151 (380)
Q Consensus 93 ~~~~~~~al~~~~~~~~~-il~~~~pi~v~ll~~~~l----~ek~~~~~~~~v~l~~~Gv~l~~ 151 (380)
...........+.++..+ +..+..-+..+++..+=. +++++..+++++++.++|+.++.
T Consensus 82 ~vt~s~~l~p~lGa~~t~~l~i~gQli~glliD~fG~~g~~~~~~~~~r~lgi~L~l~gil~~~ 145 (150)
T COG3238 82 FVTSSILLAPRLGAATTIALVIAGQLIMGLLIDHFGWFGVPKRPLNLPRILGILLVLAGILLAR 145 (150)
T ss_pred hhhhhHHhccchhHHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCHHHHHHHHHHHHHHHHhc
Confidence 444444555555554444 444556666666665532 46889999999999999965543
No 93
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=95.46 E-value=0.21 Score=46.74 Aligned_cols=144 Identities=14% Similarity=0.059 Sum_probs=94.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCcHHHHHHHHHHHHHHHHHHHHHHhhcc--CCCcccHHhhhHHhhhHHH
Q 016904 11 LTYLYLLIYILLSSGVILYNKWVLSPKYFNFPFPITLTMIHMGFSGVVAFFLVRVFKVV--SPVKMTFEIYATCVVPISA 88 (380)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~k~~l~~~~~~~~~p~~~~~~r~~~~~~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 88 (380)
+..++.++-.+....+..+-|.-.++++.+.+-|.++.+.-.+ ..+++++........ ++...+....+..++..++
T Consensus 247 lG~llaL~sA~~YavY~vllk~~~~~eg~rvdi~lffGfvGLf-nllllwP~l~iL~~~~~e~F~lP~~~q~~~vv~~~l 325 (416)
T KOG2765|consen 247 LGNLLALLSALLYAVYTVLLKRKIGDEGERVDIQLFFGFVGLF-NLLLLWPPLIILDFFGEERFELPSSTQFSLVVFNNL 325 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHH-HHHHHhHHHHHHHHhccCcccCCCCceeEeeeHhhH
Confidence 3333333333333334555677666555567756666555443 445555433332222 2222222211333344444
Q ss_pred -HHHHHHHHHhhhhhcccHhHHHHHHHHHHHHHHHHHHHhccccccHhHHHHHHHHHhhhheeeeccc
Q 016904 89 -FFASSLWFGNTAYLHISVAFIQMLKALMPVATFFMAVLCGTDKARLDVFLNMVLVSVGVVISSYGEI 155 (380)
Q Consensus 89 -~~~~~~~~~~~al~~~~~~~~~il~~~~pi~v~ll~~~~l~ek~~~~~~~~v~l~~~Gv~l~~~~~~ 155 (380)
.....-+++.+|.-.+++-.+++-.+.+....++.-.++.++++++..++|.+.+++|.+++...+.
T Consensus 326 igtvvSDylW~~a~~lTs~Lv~TlgmSltIPLA~~aD~l~k~~~~S~~~iiGsi~Ifv~Fv~vn~~~~ 393 (416)
T KOG2765|consen 326 IGTVVSDYLWAKAVLLTSPLVVTLGMSLTIPLAMFADVLIKGKHPSALYIIGSIPIFVGFVIVNISSE 393 (416)
T ss_pred HHHHHHHHHHHHHHHhccchhheeeeeEeeeHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhheecccc
Confidence 3445778999999999999999999999999999999999999999999999999999999887654
No 94
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=94.92 E-value=0.083 Score=46.11 Aligned_cols=131 Identities=11% Similarity=0.108 Sum_probs=83.0
Q ss_pred HHHHHHHHHHHHHHHhhhC-CCC---CC----HHHHHHHHHHHHHHHHHHHHHhhcCCccccccchhhHHHHHHHHHHHH
Q 016904 168 GIVAEALRLVLTQVLLQKK-GLT---LN----PITSLYYIAPCSFVFLFVPWYLLEKPMMEVSQIQFNFWIFFSNALCAL 239 (380)
Q Consensus 168 s~~~~a~~~v~~~~~~~~~-~~~---~~----~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (380)
--+||-.|.+.++|+.+.+ +.. .. ...+.+.++....++.=....+.+.... .. ...+.-.. +-..+
T Consensus 21 ifvCYF~yGI~QEkitrGkYg~~g~~~E~FTfalaLVf~qC~~N~vfAkvl~~ir~~~~~--D~--t~~~~YaA-cs~sY 95 (337)
T KOG1580|consen 21 IFVCYFVYGIQQEKITRGKYGLPGESIEKFTFALALVFFQCTANTVFAKVLFLIRKKTEI--DN--TPTKMYAA-CSASY 95 (337)
T ss_pred hhheehhhhhHHHHhhccccCCCCcchheehHHHHHHHHHHHHHHHHHHhheeecccccc--cC--CcchHHHH-HHHHH
Confidence 3468889999999997753 111 11 2334455555444333222222221111 11 11122222 23333
Q ss_pred H-HHHHHHHHHhhcchhHHHHhhhhhhHHHHHHHHHhcCCCCcchhhhHHHHHHHHHHHHHHHhhh
Q 016904 240 A-LNFSIFLVIGRTGAVTIRVAGVLKDWILIALSTVIFPESTITGLNIIGYAIALCGVVMYNYIKV 304 (380)
Q Consensus 240 ~-~~~~~~~~i~~~~a~~~s~~~~l~~v~~~~~~~l~~~~~~~~~~~~~G~~lii~g~~~~~~~~~ 304 (380)
. ..+..+.+++..+=-+.-+-...+|+...++|+++. +..-+|....-..+|++|+.++.+.+.
T Consensus 96 LlAMVssN~Alq~vpYPTqVlgKScKPIPVMilGVl~~-~KsY~w~kY~cVL~IV~GValFmYK~~ 160 (337)
T KOG1580|consen 96 LLAMVSSNQALQYVPYPTQVLGKSCKPIPVMILGVLFA-HKSYHWRKYCCVLMIVVGVALFMYKEN 160 (337)
T ss_pred HHHHHhccchhcccCCcHHHhcccCCCcceeeeehhhh-cccccHHHHHHHHHHHHHHHHhhcccc
Confidence 3 344567788888877788888999999999999999 777999999999999999999887543
No 95
>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins. They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.
Probab=94.79 E-value=0.12 Score=39.02 Aligned_cols=48 Identities=10% Similarity=0.043 Sum_probs=26.9
Q ss_pred HHHHHHhhcchhHH-HHhhhhhhHHHHHHHHHhcCCCCcchhhhHHHHHH
Q 016904 244 SIFLVIGRTGAVTI-RVAGVLKDWILIALSTVIFPESTITGLNIIGYAIA 292 (380)
Q Consensus 244 ~~~~~i~~~~a~~~-s~~~~l~~v~~~~~~~l~~~~~~~~~~~~~G~~li 292 (380)
+...++++.+...+ ++..-+..+.+.+.|+++| +|++++.+++|+.+|
T Consensus 45 ~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f-~E~~s~~~~~gi~lI 93 (93)
T PF00893_consen 45 FLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFF-GESLSLSKWLGIGLI 93 (93)
T ss_dssp HHHHHH-------HHHHHHHHHHHHHHHHHHHHH---------HHHHHHH
T ss_pred HHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHh-CCCCCHHHHhheeeC
Confidence 35557888766554 6667788899999999999 777999999999885
No 96
>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=93.88 E-value=0.77 Score=41.89 Aligned_cols=136 Identities=10% Similarity=0.043 Sum_probs=95.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCcHHHHHHHHHHHHHHHHHHHHHHhhccCCCcc----cHHhhhHHhhh
Q 016904 10 VLTYLYLLIYILLSSGVILYNKWVLSPKYFNFPFPITLTMIHMGFSGVVAFFLVRVFKVVSPVKM----TFEIYATCVVP 85 (380)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~k~~l~~~~~~~~~p~~~~~~r~~~~~~~l~~~~~~~~~~~~~~~----~~~~~~~~~~~ 85 (380)
.....++..+...=...+-..+.++. +++.+ ++.+.+.--+...+.-.......+. -...+ ...+.++.+++
T Consensus 171 ~~G~~Ll~~~L~fDgfTn~tQd~lf~--~~k~s-~~~mM~~vNLf~~i~~~~~li~qg~-~~~av~F~~~hp~~~~Di~l 246 (327)
T KOG1581|consen 171 PIGILLLFGYLLFDGFTNATQDSLFK--KYKVS-SLHMMFGVNLFSAILNGTYLILQGH-LLPAVSFIKEHPDVAFDILL 246 (327)
T ss_pred hHhHHHHHHHHHHHhhHHhHHHHHhc--cCCcc-HhHHHHHHHHHHHHHHHHhhhcCCC-CchHHHHHHcChhHHHHHHH
Confidence 34555666666655555557777777 66777 7777666666655554444321111 01111 11334678888
Q ss_pred HHHHHHHHHHHHhhhhhcccHhHHHHHHHHHHHHHHHHHHHhccccccHhHHHHHHHHHhhhhe
Q 016904 86 ISAFFASSLWFGNTAYLHISVAFIQMLKALMPVATFFMAVLCGTDKARLDVFLNMVLVSVGVVI 149 (380)
Q Consensus 86 ~~~~~~~~~~~~~~al~~~~~~~~~il~~~~pi~v~ll~~~~l~ek~~~~~~~~v~l~~~Gv~l 149 (380)
.+++.+.++.+-+.-++--.+-+.+++..+-=++..+++.++++.+++..+|+++.+.+.|+.+
T Consensus 247 ~s~~gavGQ~FI~~TI~~FGslt~t~I~ttRk~~si~lS~i~f~h~~s~~q~~g~~iVFg~i~l 310 (327)
T KOG1581|consen 247 YSTCGAVGQLFIFYTIERFGSLTFTTIMTTRKMVSIMLSCIVFGHPLSSEQWLGVLIVFGGIFL 310 (327)
T ss_pred HHHhhhhhhheehhhHhhcccHHHHHHHHHHHHHHHHHHHHHhCCccchhhccCeeeehHHHHH
Confidence 9999999998888888777777777888888999999999999999999999999998888764
No 97
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=93.77 E-value=0.065 Score=47.75 Aligned_cols=74 Identities=12% Similarity=-0.023 Sum_probs=62.7
Q ss_pred cccHHhhhHHhhhHHHHHHHHHHHHhhhhhcccHhHHHHHHHHHHHHHHHHHHHhccccccHhHHHHHHHHHhhh
Q 016904 73 KMTFEIYATCVVPISAFFASSLWFGNTAYLHISVAFIQMLKALMPVATFFMAVLCGTDKARLDVFLNMVLVSVGV 147 (380)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~il~~~~pi~v~ll~~~~l~ek~~~~~~~~v~l~~~Gv 147 (380)
+-.+|+ ++.++.+|++..+++.+-..|+|-=-++-.++.+++-.++..+..++++++.++...|.|.++.+...
T Consensus 247 P~cgkd-r~l~~~lGvfgfigQIllTm~lQiErAGpvaim~~~dvvfAf~wqv~ff~~~Pt~ws~~Ga~~vvsS~ 320 (346)
T KOG4510|consen 247 PHCGKD-RWLFVNLGVFGFIGQILLTMGLQIERAGPVAIMTYTDVVFAFFWQVLFFGHWPTIWSWVGAVMVVSST 320 (346)
T ss_pred Cccccc-eEEEEEehhhhhHHHHHHHHHhhhhccCCeehhhHHHHHHHHHHHHHHhcCCChHHHhhceeeeehhH
Confidence 335566 46667778888899999999999999999999999999999999999999999999998876554433
No 98
>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function. Many members are annotated as potential transmembrane proteins.
Probab=92.40 E-value=0.33 Score=37.85 Aligned_cols=53 Identities=21% Similarity=0.248 Sum_probs=41.0
Q ss_pred HHHHHhhcchhHHHHh-hhhhhHHHHHHHHHhcCCCCcchhhhHHHHHHHHHHHH
Q 016904 245 IFLVIGRTGAVTIRVA-GVLKDWILIALSTVIFPESTITGLNIIGYAIALCGVVM 298 (380)
Q Consensus 245 ~~~~i~~~~a~~~s~~-~~l~~v~~~~~~~l~~~~~~~~~~~~~G~~lii~g~~~ 298 (380)
++..+++.+-+.+..+ +.+.-+++.+.++++. ||..+...++|+.+++.|+.+
T Consensus 58 f~~~L~~~dlSlavPi~Nsl~fvfT~l~g~~lg-e~~~~~~~~~G~~Li~~Gv~L 111 (113)
T PF10639_consen 58 FFLLLGSADLSLAVPIANSLAFVFTALTGWLLG-EEVISRRTWLGMALILAGVAL 111 (113)
T ss_pred HHHHHhcCCceeeehHHhHHHHHHHHHHHHHhc-CcccchhHHHHHHHHHcCeee
Confidence 3445666665544444 6788888999998888 887899999999999999864
No 99
>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=92.29 E-value=1.6 Score=37.99 Aligned_cols=127 Identities=11% Similarity=0.043 Sum_probs=87.1
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCcCCCcHHHHHHHHHHHHHHHHHHHHHHhhccCCC----cccHHhhhHHhhhHHHHHHH
Q 016904 17 LIYILLSSGVILYNKWVLSPKYFNFPFPITLTMIHMGFSGVVAFFLVRVFKVVSPV----KMTFEIYATCVVPISAFFAS 92 (380)
Q Consensus 17 ~~~~~~~~~~~~~~k~~l~~~~~~~~~p~~~~~~r~~~~~~~l~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~ 92 (380)
......+..+.+..|...+ --++. -+.-.++.-+++..++..+-.......+. ..+... ...+++.|++..+
T Consensus 161 ~~NclssaafVL~mrkri~--ltNf~-d~dtmfYnNllslPiL~~~s~~~edws~~n~annl~~d~-l~am~ISgl~svg 236 (309)
T COG5070 161 FTNCLSSAAFVLIMRKRIK--LTNFK-DFDTMFYNNLLSLPILLSFSFLFEDWSPGNLANNLSVDS-LMAMFISGLCSVG 236 (309)
T ss_pred ehhhHhHHHHHHHHHHhhc--ccccc-hhhHHHHhhhHHHHHHHHHHHHhccCCcchhhcCCChHH-HHHHHHHHHHHhh
Confidence 3344445555555555544 22444 44566777777777766655444433322 122222 3456777888888
Q ss_pred HHHHHhhhhhcccHhHHHHHHHHHHHHHHHHHHHhccccccHhHHHHHHHHHhhh
Q 016904 93 SLWFGNTAYLHISVAFIQMLKALMPVATFFMAVLCGTDKARLDVFLNMVLVSVGV 147 (380)
Q Consensus 93 ~~~~~~~al~~~~~~~~~il~~~~pi~v~ll~~~~l~ek~~~~~~~~v~l~~~Gv 147 (380)
..++.-|.++.++....++..++.-...++.+.+++.|..+...+.++++++...
T Consensus 237 iSy~saWcvrVtSSTtySMvGALNKlp~alaGlvffdap~nf~si~sillGflsg 291 (309)
T COG5070 237 ISYCSAWCVRVTSSTTYSMVGALNKLPIALAGLVFFDAPVNFLSIFSILLGFLSG 291 (309)
T ss_pred hhhccceeEeehhhhHHHHHHHhhhChHHHhhhhhcCCchhHHHHHHHHHHHHHH
Confidence 8899999999999999999999999999999999999998888888877765543
No 100
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=91.87 E-value=0.11 Score=45.72 Aligned_cols=96 Identities=17% Similarity=0.126 Sum_probs=67.9
Q ss_pred HHHHHHHHHHHHHHHhhccCCCcccHHhhhHHhhhHHHHHHHHHHHHhhhhhcccHhHHHHHHHHHHHHHHHHHHHhccc
Q 016904 51 HMGFSGVVAFFLVRVFKVVSPVKMTFEIYATCVVPISAFFASSLWFGNTAYLHISVAFIQMLKALMPVATFFMAVLCGTD 130 (380)
Q Consensus 51 r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~il~~~~pi~v~ll~~~~l~e 130 (380)
-.+++.++..+..-..+ ..+...|. .++-...|+.++.++.++..|-+....++.-.+..+..+...+-+.+++||
T Consensus 184 PqAiGMv~~ali~~~~~---~~~~~~K~-t~~nii~G~~Wa~GNl~ml~a~~~~GvAt~FSlSQlgViisTiGGIl~L~e 259 (288)
T COG4975 184 PQAIGMVIGALILGFFK---MEKRFNKY-TWLNIIPGLIWAIGNLFMLLAAQKVGVATSFSLSQLGVIISTIGGILFLGE 259 (288)
T ss_pred HHHHHHHHHHHHHhhcc---cccchHHH-HHHHHhhHHHHHhhHHHHHHhhhhhceeeeeeHhhheeeeeecceEEEEec
Confidence 34445555554443222 22223333 445566699999999999999999999998889999999999999999999
Q ss_pred cccHhHHH----HHHHHHhhhhee
Q 016904 131 KARLDVFL----NMVLVSVGVVIS 150 (380)
Q Consensus 131 k~~~~~~~----~v~l~~~Gv~l~ 150 (380)
|-+++++. |+++.++|..++
T Consensus 260 kKtkkEm~~v~iGiilivvgai~l 283 (288)
T COG4975 260 KKTKKEMVYVIIGIILIVVGAILL 283 (288)
T ss_pred cCchhhhhhhhhhHHHHHHHhhhh
Confidence 99999854 555555565543
No 101
>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family. This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane
Probab=91.66 E-value=7.5 Score=36.40 Aligned_cols=141 Identities=13% Similarity=0.087 Sum_probs=74.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHHHHH-hhcCCccc---cccchhhHHHHHHH
Q 016904 159 IVGTLYQVTGIVAEALRLVLTQVLLQKKGLTLNPITSLYYIAPCSFVFLFVPWY-LLEKPMME---VSQIQFNFWIFFSN 234 (380)
Q Consensus 159 ~~G~~l~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~-~~~~~~~~---~~~~~~~~~~~~~~ 234 (380)
..|+++..+++++.+.+.+-.||. |+ -..+.....+-+-..+.+|... ....|+.. .......++...+.
T Consensus 6 i~Gii~h~iGg~~~~sfy~P~kkv-k~-----WsWEs~Wlv~gi~swli~P~~~a~l~ip~~~~i~~~~~~~~l~~~~l~ 79 (344)
T PF06379_consen 6 ILGIIFHAIGGFASGSFYVPFKKV-KG-----WSWESYWLVQGIFSWLIVPWLWALLAIPDFFSIYSATPASTLFWTFLF 79 (344)
T ss_pred HHHHHHHHHHHHHhhhhccchhhc-CC-----ccHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHhCChhHHHHHHHH
Confidence 579999999999999999888876 32 4455555444434444455432 22223222 11122223333333
Q ss_pred HHHHHHHHHHHHHHHhhcch-hHHHHhhhhhhHHHHHHHHHhcC------CCCcchhhhHHHHHHHHHHHHHHHhhhh
Q 016904 235 ALCALALNFSIFLVIGRTGA-VTIRVAGVLKDWILIALSTVIFP------ESTITGLNIIGYAIALCGVVMYNYIKVK 305 (380)
Q Consensus 235 ~~~~~~~~~~~~~~i~~~~a-~~~s~~~~l~~v~~~~~~~l~~~------~~~~~~~~~~G~~lii~g~~~~~~~~~~ 305 (380)
|++--+....+=..+++.+- ...++.--+..++..++--++.| +.+-....++|.+++++|+.+..+....
T Consensus 80 G~lWGIGgltfGl~mryLGvSLG~sI~lGl~~~~GTlippi~~g~~~~l~~~~~g~~vL~Gv~v~LiGIai~g~AG~~ 157 (344)
T PF06379_consen 80 GVLWGIGGLTFGLAMRYLGVSLGQSIALGLCAVFGTLIPPIFQGTFDELLATPSGQIVLLGVAVCLIGIAICGKAGSM 157 (344)
T ss_pred HHHHhcchhhHhHHHHHHhHHHHHHHHHHHHHHHhhchHHHHcCcccccccCCCchhhhhHHHHHHHHHHHHhHHHHh
Confidence 44433333333334555442 22333333334444444333321 1223457889999999999998875443
No 102
>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=91.21 E-value=1.8 Score=39.85 Aligned_cols=138 Identities=13% Similarity=0.068 Sum_probs=87.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCcHHHHHHHHHHHHHHHHHHHHHHhhccC-----CCcccHHhhhHHhhhH
Q 016904 12 TYLYLLIYILLSSGVILYNKWVLSPKYFNFPFPITLTMIHMGFSGVVAFFLVRVFKVVS-----PVKMTFEIYATCVVPI 86 (380)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~k~~l~~~~~~~~~p~~~~~~r~~~~~~~l~~~~~~~~~~~-----~~~~~~~~~~~~~~~~ 86 (380)
...++....+.......+.|...+.. ++. -+-+.++.-++....+.......+..+ .........+..+...
T Consensus 158 gY~w~~~n~~~~a~~~v~~kk~vd~~--~l~-~~~lv~yNnl~~L~~l~~~~~~~ge~~~l~~~~~~~~~~~~~~~~~lS 234 (314)
T KOG1444|consen 158 GYSWALANCLTTAAFVVYVKKSVDSA--NLN-KFGLVFYNNLLSLPPLLILSFITGELDALSLNFDNWSDSSVLVVMLLS 234 (314)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhccc--ccc-ceeEEeehhHHHHHHHHHHHHHhcchHHHHhhcccccchhHHHHHHHH
Confidence 34555566666666677777777733 333 344666666666665555544444322 1011111113444444
Q ss_pred HHHHHHHHHHHhhhhhcccHhHHHHHHHHHHHHHHHHHHHhccccccHhHHHHHHHHHhhhheeee
Q 016904 87 SAFFASSLWFGNTAYLHISVAFIQMLKALMPVATFFMAVLCGTDKARLDVFLNMVLVSVGVVISSY 152 (380)
Q Consensus 87 ~~~~~~~~~~~~~al~~~~~~~~~il~~~~pi~v~ll~~~~l~ek~~~~~~~~v~l~~~Gv~l~~~ 152 (380)
+++..+-.++..+..+..++.+.++.-...-..+.+...++.+++.++...+|+.+++.|-++-.+
T Consensus 235 cv~gf~isy~s~~ct~~~SAtT~tivG~~n~l~t~l~~ll~~d~~~~~~n~~gll~~~~ggv~Y~~ 300 (314)
T KOG1444|consen 235 CVMGFGISYTSFLCTRVNSATTTTIVGAKNKLLTYLGGLLFGDKPFTFLNVIGLLVGFFGGVLYSY 300 (314)
T ss_pred HHHHHHHHHHHHHHHhhccccceeehhhhhhHHHHHHHHhcCCceechhhhHHHHHHhhhhhHHhh
Confidence 555556778899999999999888888666777777777778888899888888888888766543
No 103
>PRK13108 prolipoprotein diacylglyceryl transferase; Reviewed
Probab=89.65 E-value=22 Score=35.03 Aligned_cols=24 Identities=13% Similarity=-0.054 Sum_probs=20.0
Q ss_pred cchhhhHHHHHHHHHHHHHHHhhh
Q 016904 281 ITGLNIIGYAIALCGVVMYNYIKV 304 (380)
Q Consensus 281 ~~~~~~~G~~lii~g~~~~~~~~~ 304 (380)
++..|++.+.++++|++++.+.++
T Consensus 254 l~~~Q~lSl~~il~gl~~~~~~~~ 277 (460)
T PRK13108 254 IRINSFTSTFVFIGAVVYIILAPK 277 (460)
T ss_pred ccHHHHHHHHHHHHHHHHHHHhhc
Confidence 788999999999999887766443
No 104
>PF07168 Ureide_permease: Ureide permease; InterPro: IPR009834 This entry represents ureide permease, which transports a wide spectrum of oxo derivatives of heterocyclic nitrogen compounds, including allantoin, uric acid and xanthine, but not adenine. Transport is dependent on glucose and a proton gradient [].
Probab=87.87 E-value=0.71 Score=42.11 Aligned_cols=73 Identities=14% Similarity=0.087 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHhh-hhhhHHHHHHHHHhcCCCCcc--hhhhHHHHHHHHHHHHHHHh
Q 016904 228 FWIFFSNALCALALNFSIFLVIGRTGAVTIRVAG-VLKDWILIALSTVIFPESTIT--GLNIIGYAIALCGVVMYNYI 302 (380)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~i~~~~a~~~s~~~-~l~~v~~~~~~~l~~~~~~~~--~~~~~G~~lii~g~~~~~~~ 302 (380)
+...+.+|++--+.|++..+++...+-..+-.++ .+.-++.+++-+++ |.+.+ ..-+.|.+++++++++-...
T Consensus 72 v~~A~aGGvvfnlgNillq~aia~aGmSVafpvg~glalVlGv~~NYfl--d~~~n~a~iLF~GV~cf~iAI~lga~a 147 (336)
T PF07168_consen 72 VLFAMAGGVVFNLGNILLQAAIAFAGMSVAFPVGIGLALVLGVTLNYFL--DPKINRAEILFPGVACFLIAIILGAAA 147 (336)
T ss_pred HHHHHHhhHhhhhHHHHHHHHHHHhcceeeeeeecceEEEEeeeeeeec--cCCCCCceEEEccHHHHHHHHHHHHHH
Confidence 3344556776666777766666665543221111 11222333333333 44454 35567888888888775543
No 105
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=85.87 E-value=0.24 Score=44.42 Aligned_cols=83 Identities=12% Similarity=0.072 Sum_probs=0.0
Q ss_pred ccHhHHHHHHHHHHHHHHHHH-HHhccc-cccHhHHHHHHHHHhhhheeeecc--ceehHHHHHHHHHHHHHHHHHHHHH
Q 016904 104 ISVAFIQMLKALMPVATFFMA-VLCGTD-KARLDVFLNMVLVSVGVVISSYGE--IHFNIVGTLYQVTGIVAEALRLVLT 179 (380)
Q Consensus 104 ~~~~~~~il~~~~pi~v~ll~-~~~l~e-k~~~~~~~~v~l~~~Gv~l~~~~~--~~~~~~G~~l~l~s~~~~a~~~v~~ 179 (380)
.+-+..+++.+...+++.++- ++++|+ -+-+.-.++++++++-+.+...-. .+.-+.|+++.+..++..-..+.+.
T Consensus 47 ~t~~a~~vl~sfAvvliiIIiIImlF~RrLLCPLGlLCiilimi~lLv~~L~tLtGQ~LF~Gi~~l~l~~lLaL~vW~Ym 126 (381)
T PF05297_consen 47 LTQGALTVLYSFAVVLIIIIIIIMLFKRRLLCPLGLLCIILIMIVLLVSMLWTLTGQTLFVGIVILFLCCLLALGVWFYM 126 (381)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444555555444444333 233444 446666777777766655544322 2334567665555544433333332
Q ss_pred HHHhhhCC
Q 016904 180 QVLLQKKG 187 (380)
Q Consensus 180 ~~~~~~~~ 187 (380)
.++++.+
T Consensus 127 -~lLr~~G 133 (381)
T PF05297_consen 127 -WLLRELG 133 (381)
T ss_dssp --------
T ss_pred -HHHHHhh
Confidence 2445543
No 106
>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]
Probab=85.56 E-value=0.56 Score=39.96 Aligned_cols=62 Identities=18% Similarity=0.355 Sum_probs=52.8
Q ss_pred HHHHHHHHHHhhcchhHHHHhhhhhhHHHHHHHHHhcCCCCcchhhhHHHHHHHHHHHHHHHh
Q 016904 240 ALNFSIFLVIGRTGAVTIRVAGVLKDWILIALSTVIFPESTITGLNIIGYAIALCGVVMYNYI 302 (380)
Q Consensus 240 ~~~~~~~~~i~~~~a~~~s~~~~l~~v~~~~~~~l~~~~~~~~~~~~~G~~lii~g~~~~~~~ 302 (380)
+.++.+..++++.+|+.++.....+..+..+++++++|| ++....++..++.+.|+++..+.
T Consensus 65 ~aNY~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~D-~~~~~kIlaailAI~GiVmiay~ 126 (290)
T KOG4314|consen 65 GANYLYLLALKKISASDASAIFACNAAFVFILAIIVLGD-RFMGFKILAAILAIGGIVMIAYA 126 (290)
T ss_pred cCCcHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHhcc-chhhhhHHHHHHHhCcEEEEEec
Confidence 345667778999999999999999999999999999955 59999999999999888776543
No 107
>PF10225 DUF2215: Uncharacterized conserved protein (DUF2215); InterPro: IPR024233 This entry represents a domain that is found in a number of different proteins, including a family of transmembrane proteins.
Probab=82.88 E-value=14 Score=33.22 Aligned_cols=47 Identities=13% Similarity=0.012 Sum_probs=29.5
Q ss_pred HHhhcchhHHHHhhhhhhHHHHHHHHHhcCCCCcchhhhHHHHHHHHHHH
Q 016904 248 VIGRTGAVTIRVAGVLKDWILIALSTVIFPESTITGLNIIGYAIALCGVV 297 (380)
Q Consensus 248 ~i~~~~a~~~s~~~~l~~v~~~~~~~l~~~~~~~~~~~~~G~~lii~g~~ 297 (380)
+.++-+++.....+.++-.+-++-..+++ .. +...-+|.+++++.+.
T Consensus 115 cy~~gp~~~~rs~~~v~W~Lqligl~lI~-~s--s~~~~~a~~~i~~~l~ 161 (249)
T PF10225_consen 115 CYRYGPPVDPRSRNFVKWALQLIGLVLIY-FS--SQDPEFAFAAIILLLL 161 (249)
T ss_pred hcccCCCccHhHHHHHHHHHHHHHHHHHH-HH--cCcHHHHHHHHHHHHH
Confidence 44577777777777787777777777777 32 3334445555555444
No 108
>KOG3912 consensus Predicted integral membrane protein [General function prediction only]
Probab=81.78 E-value=20 Score=32.63 Aligned_cols=67 Identities=22% Similarity=0.273 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHHHHHHhhcchhHHHHhhhhhhHHHHHHHHHhcCCCCcchhhhHHHHHHHHHHHHHHH
Q 016904 234 NALCALALNFSIFLVIGRTGAVTIRVAGVLKDWILIALSTVIFPESTITGLNIIGYAIALCGVVMYNY 301 (380)
Q Consensus 234 ~~~~~~~~~~~~~~~i~~~~a~~~s~~~~l~~v~~~~~~~l~~~~~~~~~~~~~G~~lii~g~~~~~~ 301 (380)
.+++-.......+.++..++|+...+.--...+++-+++.-++ +..++..||+|+..+++|++....
T Consensus 92 Pal~Di~gsslm~vgL~lTsASsfQMlRGaviIFvglfst~~L-n~ti~~~qWl~i~fv~lGlviVg~ 158 (372)
T KOG3912|consen 92 PALCDIAGSSLMYVGLNLTSASSFQMLRGAVIIFVGLFSTMFL-NRTITGRQWLGILFVSLGLVIVGS 158 (372)
T ss_pred hHHHHHhhhHHHHHHHHHhhHHHHHHhhcchhhhhHHHHHHHH-hcccchhhHHHHHHHHhhhheeee
Confidence 3444444444456677888888888888888999999999999 667999999999999999987543
No 109
>PRK06638 NADH:ubiquinone oxidoreductase subunit J; Provisional
Probab=81.74 E-value=24 Score=30.61 Aligned_cols=47 Identities=21% Similarity=0.330 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHhhhCCCCCCHHHHHHHHHHHHHHHHHHHHHh
Q 016904 160 VGTLYQVTGIVAEALRLVLTQ-VLLQKKGLTLNPITSLYYIAPCSFVFLFVPWYL 213 (380)
Q Consensus 160 ~G~~l~l~s~~~~a~~~v~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~ 213 (380)
...++.+.+-++-|...++.. .. +.-.+++-|.+.+..++++..++.
T Consensus 30 ~s~l~Li~~f~~vA~l~~ll~a~F-------la~~qIiVYvGAI~VLflFvIMll 77 (198)
T PRK06638 30 HSALFLILTFLSIAGLYFLLGAEF-------LGVVQIIVYVGAVMVLFLFVVMML 77 (198)
T ss_pred HHHHHHHHHHHHHHHHHHHhchHH-------HHHHHHHHHHHHHHHHHHHHHHHc
Confidence 344555555555554333332 22 244666677777776666666654
No 110
>PF04342 DUF486: Protein of unknown function, DUF486; InterPro: IPR007437 This family contains several proteins of uncharacterised function.
Probab=80.69 E-value=23 Score=27.06 Aligned_cols=52 Identities=12% Similarity=0.165 Sum_probs=35.2
Q ss_pred hhhhcccHhHHHHHHH-HHHHHHHHHHHHhccccccHhHHHHHHHHHhhhhee
Q 016904 99 TAYLHISVAFIQMLKA-LMPVATFFMAVLCGTDKARLDVFLNMVLVSVGVVIS 150 (380)
Q Consensus 99 ~al~~~~~~~~~il~~-~~pi~v~ll~~~~l~ek~~~~~~~~v~l~~~Gv~l~ 150 (380)
+|.+.-+.+.--++.- .+...-+.++++++||++++....|.++.++++..+
T Consensus 54 iG~~~~s~~QLKi~QEvitL~vF~~Fsv~~l~E~l~~n~l~af~~i~~av~fi 106 (108)
T PF04342_consen 54 IGYQTFSLAQLKIIQEVITLVVFAPFSVFYLGEPLKWNYLWAFLCILGAVYFI 106 (108)
T ss_pred hhccccCHHHHHHHHHHHhhheeHHHHHHHhCCCccHHHHHHHHHHHHhhhee
Confidence 3444444444444433 334445667889999999999999999988887654
No 111
>PRK02237 hypothetical protein; Provisional
Probab=80.11 E-value=25 Score=27.04 Aligned_cols=40 Identities=8% Similarity=0.158 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHhccccccHhHHHHHHHHHhhhheeeec
Q 016904 114 ALMPVATFFMAVLCGTDKARLDVFLNMVLVSVGVVISSYG 153 (380)
Q Consensus 114 ~~~pi~v~ll~~~~l~ek~~~~~~~~v~l~~~Gv~l~~~~ 153 (380)
....+...+..+++-++|+++..++|..++++|+.++.+.
T Consensus 67 GvyI~~Sl~W~w~vdg~~Pd~~D~iGa~v~L~G~~iI~~~ 106 (109)
T PRK02237 67 GVYVAGSLLWLWVVDGVRPDRWDWIGAAICLVGMAVIMYA 106 (109)
T ss_pred hHHHHHHHHHHHHhcCcCCChhHHHhHHHHHHhHHHheec
Confidence 4556666788899999999999999999999999887653
No 112
>PRK02237 hypothetical protein; Provisional
Probab=79.70 E-value=11 Score=28.81 Aligned_cols=47 Identities=19% Similarity=0.078 Sum_probs=39.3
Q ss_pred HHHHhhhhhhHHHHHHHHHhcCCCCcchhhhHHHHHHHHHHHHHHHhh
Q 016904 256 TIRVAGVLKDWILIALSTVIFPESTITGLNIIGYAIALCGVVMYNYIK 303 (380)
Q Consensus 256 ~~s~~~~l~~v~~~~~~~l~~~~~~~~~~~~~G~~lii~g~~~~~~~~ 303 (380)
..+.++-.-.+.++++++.+- +.+++...++|.+++++|+.+..+.+
T Consensus 61 vYAAYGGvyI~~Sl~W~w~vd-g~~Pd~~D~iGa~v~L~G~~iI~~~p 107 (109)
T PRK02237 61 VYAAYGGVYVAGSLLWLWVVD-GVRPDRWDWIGAAICLVGMAVIMYAP 107 (109)
T ss_pred HHHHhhhHHHHHHHHHHHHhc-CcCCChhHHHhHHHHHHhHHHheecC
Confidence 456667777888999999999 77799999999999999998765543
No 113
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=79.63 E-value=47 Score=29.99 Aligned_cols=102 Identities=10% Similarity=-0.008 Sum_probs=68.0
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHhhccCCCcccHHhhhHHhhhHHHHHHHHHHHHhhhhhcccHhHHHHHHHHHHHHHHH
Q 016904 43 FPITLTMIHMGFSGVVAFFLVRVFKVVSPVKMTFEIYATCVVPISAFFASSLWFGNTAYLHISVAFIQMLKALMPVATFF 122 (380)
Q Consensus 43 ~p~~~~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~il~~~~pi~v~l 122 (380)
+++++.++...-..+.-+++....+ .++. .....+.|.+++.++.+..-..+.+..+....+-++.-+.+--
T Consensus 26 Dg~~fQw~~~~~i~~~g~~v~~~~~---~p~f-----~p~amlgG~lW~~gN~~~vpii~~iGLglg~liW~s~n~l~Gw 97 (254)
T PF07857_consen 26 DGFFFQWVMCSGIFLVGLVVNLILG---FPPF-----YPWAMLGGALWATGNILVVPIIKTIGLGLGMLIWGSVNCLTGW 97 (254)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHhcC---CCcc-----eeHHHhhhhhhhcCceeehhHhhhhhhHHHHHHHHHHHHHHHH
Confidence 4888877777655544444433221 2222 2344677889999999999999999999999999885554443
Q ss_pred -HHHH-hcc---c--cccHhHHHHHHHHHhhhheeee
Q 016904 123 -MAVL-CGT---D--KARLDVFLNMVLVSVGVVISSY 152 (380)
Q Consensus 123 -l~~~-~l~---e--k~~~~~~~~v~l~~~Gv~l~~~ 152 (380)
.+.+ +++ | +-....++|++++++|..+...
T Consensus 98 ~~grfGlFg~~~~~~~~~~Ln~~G~~l~~~~~~~f~f 134 (254)
T PF07857_consen 98 ASGRFGLFGLDPQVPSSPWLNYIGVALVLVSGIIFSF 134 (254)
T ss_pred HHhhceeccccccccchhHHHHHHHHHHHHHHHheee
Confidence 3333 332 2 2355678999999999887654
No 114
>PF02694 UPF0060: Uncharacterised BCR, YnfA/UPF0060 family; InterPro: IPR003844 This entry describes integral membrane proteins of unknown function.; GO: 0016020 membrane
Probab=76.94 E-value=9.8 Score=29.11 Aligned_cols=47 Identities=17% Similarity=0.097 Sum_probs=39.4
Q ss_pred HHHHhhhhhhHHHHHHHHHhcCCCCcchhhhHHHHHHHHHHHHHHHhh
Q 016904 256 TIRVAGVLKDWILIALSTVIFPESTITGLNIIGYAIALCGVVMYNYIK 303 (380)
Q Consensus 256 ~~s~~~~l~~v~~~~~~~l~~~~~~~~~~~~~G~~lii~g~~~~~~~~ 303 (380)
..+.++-.-.+.++++++.+- +++++...++|..++++|+.+..+.+
T Consensus 59 vYAAYGGvfI~~Sl~W~w~vd-g~~Pd~~D~iGa~i~L~G~~iI~~~P 105 (107)
T PF02694_consen 59 VYAAYGGVFIVASLLWGWLVD-GVRPDRWDWIGAAICLVGVAIILFAP 105 (107)
T ss_pred HHHHhhhhHHHHHHHHHhhhc-CcCCChHHHHhHHHHHHhHHheEecC
Confidence 355667777889999999999 77799999999999999998866543
No 115
>KOG2922 consensus Uncharacterized conserved protein [Function unknown]
Probab=75.89 E-value=0.65 Score=42.74 Aligned_cols=119 Identities=16% Similarity=0.181 Sum_probs=78.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHHHHHhhcCCccccccchhhHHHHHHHHHH
Q 016904 158 NIVGTLYQVTGIVAEALRLVLTQVLLQKKGLTLNPITSLYYIAPCSFVFLFVPWYLLEKPMMEVSQIQFNFWIFFSNALC 237 (380)
Q Consensus 158 ~~~G~~l~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (380)
+..|.++++.+++.-+...++.|+-.++.+. ... -..+++.... ....||..++.-.+
T Consensus 19 ~~~G~~LaissS~~Ig~sfilkKkgl~r~~~-------~~~-------------ra~~gg~~yl--~~~~Ww~G~ltm~v 76 (335)
T KOG2922|consen 19 NIIGLVLAISSSIFIGSSFILKKKGLKRAGA-------SGL-------------RAGEGGYGYL--KEPLWWAGMLTMIV 76 (335)
T ss_pred ceeeeeehhhccEEEeeehhhhHHHHHHHhh-------hcc-------------cccCCCcchh--hhHHHHHHHHHHHH
Confidence 4678999999999999888888887665211 000 0011111111 11223442222222
Q ss_pred HHHHHHHHHHHHhhcchhHHHHhhhhhhHHHHHHHHHhcCCCCcchhhhHHHHHHHHHHHHHHHh
Q 016904 238 ALALNFSIFLVIGRTGAVTIRVAGVLKDWILIALSTVIFPESTITGLNIIGYAIALCGVVMYNYI 302 (380)
Q Consensus 238 ~~~~~~~~~~~i~~~~a~~~s~~~~l~~v~~~~~~~l~~~~~~~~~~~~~G~~lii~g~~~~~~~ 302 (380)
+=..| |.+....+++-.+.++.+.-+...+++..++ +|++++...+|++++++|......+
T Consensus 77 Gei~N---FaAYaFAPasLVtPLGAlsvi~saila~~~L-~Ekl~~~g~lGc~l~v~Gst~iV~h 137 (335)
T KOG2922|consen 77 GEIAN---FAAYAFAPASLVTPLGALSVIISAILASFFL-KEKLNLLGILGCVLCVVGSTTIVIH 137 (335)
T ss_pred HhHhh---HHHHhhchHhhhccchhHHHHHHHHHHHHHH-HHHHHHhhhhheeEEecccEEEEEe
Confidence 33333 3344567888889999999999999999999 8889999999999999998876554
No 116
>KOG1443 consensus Predicted integral membrane protein [Function unknown]
Probab=71.75 E-value=86 Score=29.12 Aligned_cols=54 Identities=15% Similarity=0.225 Sum_probs=39.8
Q ss_pred HhhhhhcccHhHHHHHHHHHHHHHHHHHHHhccccccHhHHHHHHHHHhhhhee
Q 016904 97 GNTAYLHISVAFIQMLKALMPVATFFMAVLCGTDKARLDVFLNMVLVSVGVVIS 150 (380)
Q Consensus 97 ~~~al~~~~~~~~~il~~~~pi~v~ll~~~~l~ek~~~~~~~~v~l~~~Gv~l~ 150 (380)
.+.=+.-++.-+.++..-..-+.+.+++...++++++...|+|..++..|+.+-
T Consensus 260 EflLl~~Ts~ltlSIaGI~Kel~tl~la~ii~~d~ls~lN~~Gl~i~~agi~~~ 313 (349)
T KOG1443|consen 260 EFLLLSRTSSLTLSIAGIVKEVCTLLLAIIILKDQLSLLNWLGLAICLAGILLH 313 (349)
T ss_pred HHheeeeccceeeeHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHHHHh
Confidence 333344455544455555556677888889999999999999999999998775
No 117
>PF02694 UPF0060: Uncharacterised BCR, YnfA/UPF0060 family; InterPro: IPR003844 This entry describes integral membrane proteins of unknown function.; GO: 0016020 membrane
Probab=69.78 E-value=14 Score=28.35 Aligned_cols=40 Identities=18% Similarity=0.236 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHhccccccHhHHHHHHHHHhhhheeeec
Q 016904 114 ALMPVATFFMAVLCGTDKARLDVFLNMVLVSVGVVISSYG 153 (380)
Q Consensus 114 ~~~pi~v~ll~~~~l~ek~~~~~~~~v~l~~~Gv~l~~~~ 153 (380)
....+...+..+.+-|+++++..++|..++++|+.++.+.
T Consensus 65 GvfI~~Sl~W~w~vdg~~Pd~~D~iGa~i~L~G~~iI~~~ 104 (107)
T PF02694_consen 65 GVFIVASLLWGWLVDGVRPDRWDWIGAAICLVGVAIILFA 104 (107)
T ss_pred hhHHHHHHHHHhhhcCcCCChHHHHhHHHHHHhHHheEec
Confidence 4566777788889999999999999999999999987764
No 118
>TIGR02865 spore_II_E stage II sporulation protein E. Stage II sporulation protein E (SpoIIE) is a multiple membrane spanning protein with two separable functions. It plays a role in the switch to polar cell division during sporulation. By means of it protein phosphatase activity, located in the C-terminal region, it activates sigma-F. All proteins that score above the trusted cutoff to this model are found in endospore-forming Gram-positive bacteria. Surprisingly, a sequence from the Cyanobacterium-like (and presumably non-spore-forming) photosynthesizer Heliobacillus mobilis is homologous, and scores between the trusted and noise cutoffs.
Probab=68.41 E-value=1.6e+02 Score=31.43 Aligned_cols=44 Identities=16% Similarity=0.241 Sum_probs=31.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHhccccccHhHHHHHHHHHhhhhee
Q 016904 107 AFIQMLKALMPVATFFMAVLCGTDKARLDVFLNMVLVSVGVVIS 150 (380)
Q Consensus 107 ~~~~il~~~~pi~v~ll~~~~l~ek~~~~~~~~v~l~~~Gv~l~ 150 (380)
+-+.++..+.|+-.+.++.+...+|.+...+.+.+-.++|.+-+
T Consensus 11 gRa~il~~l~PFg~af~~a~~~~~~~~~~~~~~~~~~~~G~~t~ 54 (764)
T TIGR02865 11 GRAVIVSPMAPFGIAFLAAVLLAKKGGDKAFFSALGVLLGAISI 54 (764)
T ss_pred hHHHHhcCCCchHHHHHHHHHHhhcccchHHHHHHHHHHHHHHh
Confidence 45677788899999999888877775455566666666776544
No 119
>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=67.41 E-value=10 Score=34.37 Aligned_cols=105 Identities=10% Similarity=-0.073 Sum_probs=71.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCC----CcccHHhhhHHhhhHHHHHHHHHHHHhhhhhcccHhHHHHHHHHHHHH
Q 016904 44 PITLTMIHMGFSGVVAFFLVRVFKVVSP----VKMTFEIYATCVVPISAFFASSLWFGNTAYLHISVAFIQMLKALMPVA 119 (380)
Q Consensus 44 p~~~~~~r~~~~~~~l~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~il~~~~pi~ 119 (380)
-+.++++.-+.+.++..++....+..+. ++.+-..+|..+.+.|++.....+...+=++.+++-+..+-...--..
T Consensus 215 iw~lt~ynnv~a~lLflpll~lnge~~~v~~~~~l~a~~Fw~~mtLsglfgF~mgyvTg~QIK~TSplThnISgTAka~a 294 (347)
T KOG1442|consen 215 IWRLTAYNNVNALLLFLPLLILNGEFQAVVGFPHLPAIKFWILMTLSGLFGFAMGYVTGWQIKVTSPLTHNISGTAKAAA 294 (347)
T ss_pred ehhhHHHHHHHHHHHHHHHHHHcchHHHHcCcccchHHHHHHHHHHHHHHHHHhhheeeEEEEecccceeeecHhHHHHH
Confidence 4778899999888888887766554432 233222335556666666655666666777777776666666666677
Q ss_pred HHHHHHHhccccccHhHHHHHHHHHhhhh
Q 016904 120 TFFMAVLCGTDKARLDVFLNMVLVSVGVV 148 (380)
Q Consensus 120 v~ll~~~~l~ek~~~~~~~~v~l~~~Gv~ 148 (380)
=.++++.+++|..+...|-+.++.++|..
T Consensus 295 QTvlAv~~y~E~ks~lwwtsn~~vLvgs~ 323 (347)
T KOG1442|consen 295 QTVLAVAYYSETKSGLWWTSNIVVLVGSL 323 (347)
T ss_pred HHHHHHHHHHHHhhhheeeeeEEEEehhH
Confidence 77889999999888888877666555543
No 120
>COG1742 Uncharacterized conserved protein [Function unknown]
Probab=63.67 E-value=47 Score=25.33 Aligned_cols=40 Identities=10% Similarity=0.161 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHhccccccHhHHHHHHHHHhhhheeeec
Q 016904 114 ALMPVATFFMAVLCGTDKARLDVFLNMVLVSVGVVISSYG 153 (380)
Q Consensus 114 ~~~pi~v~ll~~~~l~ek~~~~~~~~v~l~~~Gv~l~~~~ 153 (380)
....+...+..+++-+.++++..|.|..++++|+.++.+.
T Consensus 66 GvyI~~sL~W~~~Vdg~~pdr~D~~Ga~icl~G~~vil~~ 105 (109)
T COG1742 66 GVYIAASLAWLWVVDGVRPDRYDWIGAAICLAGVAVILFG 105 (109)
T ss_pred chHHHHHHHHHHHHcCcCCcHHHhhhHHHHHhceeeeEeC
Confidence 3456666777888899999999999999999999887764
No 121
>KOG4831 consensus Unnamed protein [Function unknown]
Probab=61.41 E-value=10 Score=28.87 Aligned_cols=62 Identities=10% Similarity=0.031 Sum_probs=49.0
Q ss_pred HHHHHHHHhhhhhcccHhHHHHHH-HHHHHHHHHHHHHhccccccHhHHHHHHHHHhhhheee
Q 016904 90 FASSLWFGNTAYLHISVAFIQMLK-ALMPVATFFMAVLCGTDKARLDVFLNMVLVSVGVVISS 151 (380)
Q Consensus 90 ~~~~~~~~~~al~~~~~~~~~il~-~~~pi~v~ll~~~~l~ek~~~~~~~~v~l~~~Gv~l~~ 151 (380)
.-.+..++++-++..|.+.+.=+. +++-+|+++.+..+..|-..++.++|..+.+.|+.+..
T Consensus 62 NqcgSaly~~tLa~a~islavpv~nsltfafta~~G~~LGE~~~g~~a~lGt~liv~Gi~Lci 124 (125)
T KOG4831|consen 62 NQCGSALYYLTLASAPISLAVPVTNSLTFAFTAIFGKALGEETQGGLALLGTSLIVFGIWLCI 124 (125)
T ss_pred HHhhHHHHHHHHhcCCceeeeeecchhHHHHHHHHHHHhccccccceeehhhhHHhhhhhhee
Confidence 344556788888888888766554 56888899999998888888899999999999987643
No 122
>COG3086 RseC Positive regulator of sigma E activity [Signal transduction mechanisms]
Probab=60.96 E-value=26 Score=28.45 Aligned_cols=28 Identities=7% Similarity=0.056 Sum_probs=19.3
Q ss_pred HhhcchhHHHHhhhhhhHHHHHHHHHhc
Q 016904 249 IGRTGAVTIRVAGVLKDWILIALSTVIF 276 (380)
Q Consensus 249 i~~~~a~~~s~~~~l~~v~~~~~~~l~~ 276 (380)
+..-+....+.+.|+.|.+.++++.+++
T Consensus 69 i~EkslL~sA~LvYi~PL~~l~v~~~La 96 (150)
T COG3086 69 IEEKSLLKSALLVYIFPLVGLFLGAILA 96 (150)
T ss_pred cCcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666677777777777777777765
No 123
>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family. This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane
Probab=60.59 E-value=1.5e+02 Score=27.95 Aligned_cols=221 Identities=13% Similarity=0.088 Sum_probs=124.4
Q ss_pred hHHhhhHHHHHHHHHHHHhhhhhcccHhHHHHH-HHHHHHHHHHHHHHhcc-------ccccHhHHHHHHHHHhhhheee
Q 016904 80 ATCVVPISAFFASSLWFGNTAYLHISVAFIQML-KALMPVATFFMAVLCGT-------DKARLDVFLNMVLVSVGVVISS 151 (380)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~il-~~~~pi~v~ll~~~~l~-------ek~~~~~~~~v~l~~~Gv~l~~ 151 (380)
.......|++.+.+...+-.+.+|+..+..+-+ ..++-++-.++-.++.+ ++-....++|+++.++|+++..
T Consensus 73 l~~~~l~G~lWGIGgltfGl~mryLGvSLG~sI~lGl~~~~GTlippi~~g~~~~l~~~~~g~~vL~Gv~v~LiGIai~g 152 (344)
T PF06379_consen 73 LFWTFLFGVLWGIGGLTFGLAMRYLGVSLGQSIALGLCAVFGTLIPPIFQGTFDELLATPSGQIVLLGVAVCLIGIAICG 152 (344)
T ss_pred HHHHHHHHHHHhcchhhHhHHHHHHhHHHHHHHHHHHHHHHhhchHHHHcCcccccccCCCchhhhhHHHHHHHHHHHHh
Confidence 445566788888888888999999998875443 34555565666555543 2334567999999999999876
Q ss_pred ecc-----------ceeh-HHHHHHHHHHHHHHHHHHHHHHHH--hhhC--CCCCCHHHHH--HH--HHHHHHHHHHHHH
Q 016904 152 YGE-----------IHFN-IVGTLYQVTGIVAEALRLVLTQVL--LQKK--GLTLNPITSL--YY--IAPCSFVFLFVPW 211 (380)
Q Consensus 152 ~~~-----------~~~~-~~G~~l~l~s~~~~a~~~v~~~~~--~~~~--~~~~~~~~~~--~~--~~~~~~i~l~~~~ 211 (380)
..+ .+++ -.|++.++.+.+..|..+.=...- +++. ....+++... .| ...-+.+.-+...
T Consensus 153 ~AG~~Ke~~~~~~~~efn~~kGl~iAv~sGv~Sa~fn~g~~ag~pi~~~a~a~G~~~l~~~l~~~vvv~~GGf~tN~~yc 232 (344)
T PF06379_consen 153 KAGSMKEKELGEEAKEFNFKKGLIIAVLSGVMSACFNFGLDAGKPIHEAAVAAGVNPLYANLPVYVVVLWGGFITNLIYC 232 (344)
T ss_pred HHHHhhhhhhccchhhhhhhhhHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHcCCCcHHHhCchhhhhhhhHHHHHHHHH
Confidence 532 1122 379999999988888766544311 0000 0011221111 01 0111111111111
Q ss_pred Hh--hcCCccc--------cccchhhHHHHHHHHHHHHHHHHHHHHHHhhcc----hhHHHHhhhhhhHHHHHHHHHhcC
Q 016904 212 YL--LEKPMME--------VSQIQFNFWIFFSNALCALALNFSIFLVIGRTG----AVTIRVAGVLKDWILIALSTVIFP 277 (380)
Q Consensus 212 ~~--~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~----a~~~s~~~~l~~v~~~~~~~l~~~ 277 (380)
+. ....... .+.+.......++.|++-|...+.+-+.-.+.+ .....+.+.+..+++-++|.++=
T Consensus 233 ~~~l~~~k~~s~~~d~~~~~~~~~~N~~~~aLaG~lWy~qfffYg~G~s~lg~~~~~~sW~i~ma~~vl~snvwGl~lk- 311 (344)
T PF06379_consen 233 LILLAKNKNWSWKGDYSVAKPPLLKNYLFCALAGVLWYSQFFFYGMGESKLGASGPFSSWAIHMALIVLFSNVWGLILK- 311 (344)
T ss_pred HHHHhhcCCCccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccHHHHHHHHHHHHHHHHHHHHHH-
Confidence 11 1111110 111223344455667776665555555555544 55677788888888888888773
Q ss_pred CC-----CcchhhhHHHHHHHHHHHHHHH
Q 016904 278 ES-----TITGLNIIGYAIALCGVVMYNY 301 (380)
Q Consensus 278 ~~-----~~~~~~~~G~~lii~g~~~~~~ 301 (380)
|= +.-..-++|+++++.++.+.-+
T Consensus 312 EWKg~s~kt~~vl~~G~~vlI~s~~ivG~ 340 (344)
T PF06379_consen 312 EWKGASKKTIRVLVLGIAVLILSVVIVGY 340 (344)
T ss_pred HhccCCcccHHHHHHHHHHHHHHHHHHhc
Confidence 32 2334568899998888877544
No 124
>TIGR00892 2A0113 monocarboxylate transporter 1.
Probab=59.72 E-value=1.8e+02 Score=28.49 Aligned_cols=14 Identities=7% Similarity=0.019 Sum_probs=5.7
Q ss_pred hhhHHHHHHHHHHH
Q 016904 284 LNIIGYAIALCGVV 297 (380)
Q Consensus 284 ~~~~G~~lii~g~~ 297 (380)
..+++.++.+++.+
T Consensus 402 ~f~~~~~~~li~~~ 415 (455)
T TIGR00892 402 IFYASGSIVVSAGL 415 (455)
T ss_pred HHHHhhHHHHHHHH
Confidence 33444444444443
No 125
>PF09656 PGPGW: Putative transmembrane protein (PGPGW); InterPro: IPR019099 This entry represents proteins that contain three predicted transmembrane helices and an unusual motif with consensus sequence PGPGW.
Probab=58.27 E-value=39 Score=22.42 Aligned_cols=46 Identities=24% Similarity=0.292 Sum_probs=35.6
Q ss_pred hHHHHHHHHHhhhheeeeccceehHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 016904 135 DVFLNMVLVSVGVVISSYGEIHFNIVGTLYQVTGIVAEALRLVLTQVLLQK 185 (380)
Q Consensus 135 ~~~~~v~l~~~Gv~l~~~~~~~~~~~G~~l~l~s~~~~a~~~v~~~~~~~~ 185 (380)
...+|..+.++|++++..++. |.+..+++....|......++.++.
T Consensus 4 v~v~G~~lv~~Gii~~~lPGp-----G~l~i~~GL~iLa~ef~wArr~l~~ 49 (53)
T PF09656_consen 4 VGVLGWVLVVAGIIMLPLPGP-----GLLVIFLGLAILATEFPWARRLLRR 49 (53)
T ss_pred hhhHHHHHHHHHHHhhcCCCC-----cHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 356788899999999888763 6677777777888888888877654
No 126
>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea. Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane
Probab=58.04 E-value=1.7e+02 Score=27.80 Aligned_cols=10 Identities=0% Similarity=-0.100 Sum_probs=5.5
Q ss_pred hhHHHHHHHH
Q 016904 264 KDWILIALST 273 (380)
Q Consensus 264 ~~v~~~~~~~ 273 (380)
-|+...+.+-
T Consensus 111 lpi~~~l~g~ 120 (385)
T PF03547_consen 111 LPILQALFGE 120 (385)
T ss_pred HHHHHHHhcc
Confidence 4555555554
No 127
>PRK10263 DNA translocase FtsK; Provisional
Probab=56.74 E-value=3.4e+02 Score=30.76 Aligned_cols=21 Identities=14% Similarity=0.227 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHhhcc
Q 016904 233 SNALCALALNFSIFLVIGRTG 253 (380)
Q Consensus 233 ~~~~~~~~~~~~~~~~i~~~~ 253 (380)
.||+++..+.......+...|
T Consensus 142 gGGIIG~lLs~lL~~LfG~vG 162 (1355)
T PRK10263 142 SGGVIGSLLSTTLQPLLHSSG 162 (1355)
T ss_pred ccchHHHHHHHHHHHHHhHHH
Confidence 456666655443333344433
No 128
>PF03348 Serinc: Serine incorporator (Serinc); InterPro: IPR005016 This is a family of proteins which display differential expression in various tumour and cell lines. The function of these proteins is unknown. ; GO: 0016020 membrane
Probab=56.58 E-value=2.1e+02 Score=28.18 Aligned_cols=25 Identities=24% Similarity=0.234 Sum_probs=18.6
Q ss_pred CCCcchhhhHHHHHHHHHHHHHHHh
Q 016904 278 ESTITGLNIIGYAIALCGVVMYNYI 302 (380)
Q Consensus 278 ~~~~~~~~~~G~~lii~g~~~~~~~ 302 (380)
+..-++..++|.++.++.+.....+
T Consensus 280 ~~~~~~~~iig~i~~~~~v~yss~r 304 (429)
T PF03348_consen 280 GSWNTWQSIIGLIFTFVSVLYSSFR 304 (429)
T ss_pred CCcchHHHHHHHHHHHHHHHHhccc
Confidence 3346778899999999888765543
No 129
>PF08507 COPI_assoc: COPI associated protein; InterPro: IPR013714 Proteins in this family co-localise with COPI vesicle coat proteins []. In yeast it is a Golgi membrane protein involved in vesicular trafficking, interacting with TVP18 [].
Probab=53.62 E-value=34 Score=27.54 Aligned_cols=30 Identities=30% Similarity=0.294 Sum_probs=15.0
Q ss_pred HHHHHHhcCCCCcchhhhHHHHHHHHHHHHHH
Q 016904 269 IALSTVIFPESTITGLNIIGYAIALCGVVMYN 300 (380)
Q Consensus 269 ~~~~~l~~~~~~~~~~~~~G~~lii~g~~~~~ 300 (380)
+++|.+.+ ++ --...++|..++..|++...
T Consensus 75 if~G~l~~-~~-~~~~~i~g~~~~~~G~~~i~ 104 (136)
T PF08507_consen 75 IFLGTLCL-GQ-SILSIIIGLLLFLVGVIYII 104 (136)
T ss_pred HHHHHHHH-hh-HHHHHHHHHHHHHHHHHHHH
Confidence 33444444 22 23344556666666665444
No 130
>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=52.75 E-value=1.2e+02 Score=27.68 Aligned_cols=53 Identities=11% Similarity=0.157 Sum_probs=44.2
Q ss_pred hcccHhHHHHHHHHHHHHHHHHHHHhccccccHhHHHHHHHHHhhhheeeecc
Q 016904 102 LHISVAFIQMLKALMPVATFFMAVLCGTDKARLDVFLNMVLVSVGVVISSYGE 154 (380)
Q Consensus 102 ~~~~~~~~~il~~~~pi~v~ll~~~~l~ek~~~~~~~~v~l~~~Gv~l~~~~~ 154 (380)
+.-.+..+..+...--..+.+++++++-+.++....-+.++.+.|+.+=.++.
T Consensus 282 ~~fGA~~aatvTTaRKavTi~lSfllFsKPfT~qy~~~gllv~lgI~Ln~ysk 334 (367)
T KOG1582|consen 282 KLFGALIAATVTTARKAVTILLSFLLFSKPFTEQYVWSGLLVVLGIYLNMYSK 334 (367)
T ss_pred HHhchhHHHHHHHhHhHHHHHHHHHHHcCchHHHHhhhhHHHHHHHHhhcccC
Confidence 34456667777777778899999999999999999999999999999877765
No 131
>PRK10666 ammonium transporter; Provisional
Probab=51.66 E-value=2.5e+02 Score=27.63 Aligned_cols=46 Identities=13% Similarity=-0.173 Sum_probs=22.2
Q ss_pred hccccccHhHHHHHHHHHhhhheeeec-cceehHHHHHHHHHHHHHHHH
Q 016904 127 CGTDKARLDVFLNMVLVSVGVVISSYG-EIHFNIVGTLYQVTGIVAEAL 174 (380)
Q Consensus 127 ~l~ek~~~~~~~~v~l~~~Gv~l~~~~-~~~~~~~G~~l~l~s~~~~a~ 174 (380)
+.++|++......-. ++|.+-+.-. +.-..+..++.++++++..-+
T Consensus 273 ~~~gk~~~~~~~nG~--LaGLVaITa~a~~v~p~~A~iiG~vag~v~~~ 319 (428)
T PRK10666 273 ALRGKPSLLGACSGA--IAGLVGVTPACGYVGVGGALIIGVVAGLAGLW 319 (428)
T ss_pred HHhCCCCHHHHHHHH--hhhhhhcccccccCCHHHHHHHHHHHHHHHHH
Confidence 345567655544333 2455444332 223345556666666554433
No 132
>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]
Probab=49.97 E-value=64 Score=29.50 Aligned_cols=138 Identities=10% Similarity=-0.001 Sum_probs=71.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCcHHHHHHHHHHHHHHHHHHHHH-----H--hhccCCCcccHHhh
Q 016904 7 KPLVLTYLYLLIYILLSSGVILYNKWVLSPKYFNFPFPITLTMIHMGFSGVVAFFLVR-----V--FKVVSPVKMTFEIY 79 (380)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~k~~l~~~~~~~~~p~~~~~~r~~~~~~~l~~~~~-----~--~~~~~~~~~~~~~~ 79 (380)
.++......+.+..+.+.-|.+++....+|.+.+.. ...++-.++.....+.... + ....++-..+...
T Consensus 160 ~~w~iGi~lL~~al~~sa~mgiyqE~~Y~kyGKh~~---EalFytH~LsLP~Flf~~~div~~~~~~~~se~~~~p~~g- 235 (330)
T KOG1583|consen 160 FWWLIGIALLVFALLLSAYMGIYQETTYQKYGKHWK---EALFYTHFLSLPLFLFMGDDIVSHWRLAFKSESYLIPLLG- 235 (330)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChH---HHHHHHHHhccchHHHhcchHHHHHHHHhcCcceeccccC-
Confidence 345667777888888888899999988885544433 4444444433222221110 0 0000111111111
Q ss_pred hHHhhhHHHHHHHHH-HHHhhhhhccc-------HhHHHHHHHHHHHHHHHHHHHhccccccHhHHHHHHHHHhhhhee
Q 016904 80 ATCVVPISAFFASSL-WFGNTAYLHIS-------VAFIQMLKALMPVATFFMAVLCGTDKARLDVFLNMVLVSVGVVIS 150 (380)
Q Consensus 80 ~~~~~~~~~~~~~~~-~~~~~al~~~~-------~~~~~il~~~~pi~v~ll~~~~l~ek~~~~~~~~v~l~~~Gv~l~ 150 (380)
..+|....+.+.+ ..++...+++- +-+.++...+-=.+..+++.+.++..+++..|+|..+.+.|..+.
T Consensus 236 --~~vP~~~~yLl~n~L~Qy~CikgVy~L~te~~sLTVTlvltlRKFvSLl~SiiyF~Npft~~h~lGa~lVF~Gt~~f 312 (330)
T KOG1583|consen 236 --FKVPSMWVYLLFNVLTQYFCIKGVYILTTETSSLTVTLVLTLRKFVSLLFSIIYFENPFTPWHWLGAALVFFGTLLF 312 (330)
T ss_pred --ccccHHHHHHHHHHHHHHHHHHhhhhhhceecceEEEEeeeHHHHHHHhheeeEecCCCCHHHHHHHHHHHHHHHHH
Confidence 1144444443322 33343333321 112233334445666777777777777888888888777777654
No 133
>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT).
Probab=47.86 E-value=2.8e+02 Score=27.23 Aligned_cols=14 Identities=21% Similarity=0.278 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHH
Q 016904 287 IGYAIALCGVVMYN 300 (380)
Q Consensus 287 ~G~~lii~g~~~~~ 300 (380)
++.+++++.+..|.
T Consensus 180 ~a~~v~l~~i~~~~ 193 (437)
T TIGR00939 180 TPCVVQLICIVCYL 193 (437)
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444444444
No 134
>PF15471 TMEM171: Transmembrane protein family 171
Probab=46.67 E-value=35 Score=30.72 Aligned_cols=25 Identities=32% Similarity=0.526 Sum_probs=20.1
Q ss_pred chhhhHHHHHHHHHHHHHHHhhhhh
Q 016904 282 TGLNIIGYAIALCGVVMYNYIKVKD 306 (380)
Q Consensus 282 ~~~~~~G~~lii~g~~~~~~~~~~~ 306 (380)
-.+|+.|-.++++|+..+.....|+
T Consensus 160 LslQImGPlIVl~GLCFFVVAHvKK 184 (319)
T PF15471_consen 160 LSLQIMGPLIVLVGLCFFVVAHVKK 184 (319)
T ss_pred eehhhhhhHHHHHhhhhhheeeeee
Confidence 3579999999999999888765443
No 135
>PF04342 DUF486: Protein of unknown function, DUF486; InterPro: IPR007437 This family contains several proteins of uncharacterised function.
Probab=46.39 E-value=27 Score=26.67 Aligned_cols=29 Identities=10% Similarity=0.106 Sum_probs=23.7
Q ss_pred HHHHHHhcCCCCcchhhhHHHHHHHHHHHH
Q 016904 269 IALSTVIFPESTITGLNIIGYAIALCGVVM 298 (380)
Q Consensus 269 ~~~~~l~~~~~~~~~~~~~G~~lii~g~~~ 298 (380)
+..+++++ +|++++.++.|.++++.+++.
T Consensus 77 ~~Fsv~~l-~E~l~~n~l~af~~i~~av~f 105 (108)
T PF04342_consen 77 APFSVFYL-GEPLKWNYLWAFLCILGAVYF 105 (108)
T ss_pred HHHHHHHh-CCCccHHHHHHHHHHHHhhhe
Confidence 34577888 677999999999999888654
No 136
>PF06123 CreD: Inner membrane protein CreD; InterPro: IPR010364 This family consists of several bacterial CreD or Cet inner membrane proteins. Dominant mutations of the cet gene of Escherichia coli result in tolerance to colicin E2 and increased amounts of an inner membrane protein with a Mr of 42,000. The cet gene is shown to be in the same operon as the phoM gene, which is required in a phoR background for expression of the structural gene for alkaline phosphatase, phoA. Although the Cet protein is not required for phoA expression, it has been suggested that the Cet protein has an enhancing effect on the transcription of phoA [].
Probab=43.82 E-value=3.3e+02 Score=26.80 Aligned_cols=122 Identities=18% Similarity=0.098 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHHHHHhhcCCccccccchhhHHHHHHHHHHHH
Q 016904 160 VGTLYQVTGIVAEALRLVLTQVLLQKKGLTLNPITSLYYIAPCSFVFLFVPWYLLEKPMMEVSQIQFNFWIFFSNALCAL 239 (380)
Q Consensus 160 ~G~~l~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (380)
.|++++.+.-+++-+.-++.|+ .+||.+........+...++... +.|...+ ...+++...+++..
T Consensus 300 YgiLFI~LTF~~fflfE~~~~~-------~iHpiQY~LVGlAl~lFYlLLLS-lSEhi~F------~~AYliAa~a~i~L 365 (430)
T PF06123_consen 300 YGILFIGLTFLAFFLFELLSKL-------RIHPIQYLLVGLALVLFYLLLLS-LSEHIGF------NLAYLIAALACIGL 365 (430)
T ss_pred HHHHHHHHHHHHHHHHHHHhcC-------cccHHHHHHHHHHHHHHHHHHHH-HHhhhch------HHHHHHHHHHHHHH
Confidence 5766666655544443333322 27888777654433333333332 2333211 11233333333333
Q ss_pred HHHHHHHHHHhhcchhHHHHhhhhhhHHHHHHHHHhcCCCCcchhhhHHHHHHHHHHHHH
Q 016904 240 ALNFSIFLVIGRTGAVTIRVAGVLKDWILIALSTVIFPESTITGLNIIGYAIALCGVVMY 299 (380)
Q Consensus 240 ~~~~~~~~~i~~~~a~~~s~~~~l~~v~~~~~~~l~~~~~~~~~~~~~G~~lii~g~~~~ 299 (380)
...+... .++. .-....+...+.-+.+.+.+.+-. |+ -..+.--...+++.++++|
T Consensus 366 i~~Y~~~-vl~~-~k~~~~~~~~L~~LY~~Ly~lLq~-Ed-yALL~GSl~LF~iLa~vM~ 421 (430)
T PF06123_consen 366 ISLYLSS-VLKS-WKRGLIFAGLLAALYGFLYVLLQS-ED-YALLMGSLLLFIILALVMY 421 (430)
T ss_pred HHHHHHH-HHhc-chHHHHHHHHHHHHHHHHHHHHHh-hh-HHHHHHHHHHHHHHHHHHh
Confidence 3222221 2222 222334455556667777777666 55 4443333333334444444
No 137
>PF12794 MscS_TM: Mechanosensitive ion channel inner membrane domain 1
Probab=42.67 E-value=3e+02 Score=26.03 Aligned_cols=13 Identities=15% Similarity=0.329 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHhc
Q 016904 116 MPVATFFMAVLCG 128 (380)
Q Consensus 116 ~pi~v~ll~~~~l 128 (380)
.|++....++.+.
T Consensus 60 ~pl~~~~~g~~L~ 72 (340)
T PF12794_consen 60 LPLLLLAIGYLLQ 72 (340)
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444443
No 138
>COG2323 Predicted membrane protein [Function unknown]
Probab=42.31 E-value=2.3e+02 Score=25.03 Aligned_cols=79 Identities=14% Similarity=0.074 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCCCcccHHhhhHHhhhHHHHHHHHHHHHhhhhhcccHhHHHHHHHHHHHHHHHHH
Q 016904 45 ITLTMIHMGFSGVVAFFLVRVFKVVSPVKMTFEIYATCVVPISAFFASSLWFGNTAYLHISVAFIQMLKALMPVATFFMA 124 (380)
Q Consensus 45 ~~~~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~il~~~~pi~v~ll~ 124 (380)
+.-..+|.++..++++++.++.+++.....+.-++ ++...+.-......++-. ++.-...+...+--++..+++
T Consensus 4 ~~~~~ir~vi~~~~l~l~~ri~Gkr~isqmt~fd~---vv~i~iG~i~~~~i~~~~---i~~~~~~~~~~~~~~l~~~l~ 77 (224)
T COG2323 4 LLEVAIRSVIGYLILLLLLRIMGKRSISQMTIFDF---VVMITLGSIAGDAIFDDD---VSILPTIIAILTLALLQILLS 77 (224)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhCcCccccCCHHHH---HHHHHHHHHHHHHhhCCC---CchHHHHHHHHHHHHHHHHHH
Confidence 44577899999999999999988877777776553 222233333333333332 333333444444445555556
Q ss_pred HHhcc
Q 016904 125 VLCGT 129 (380)
Q Consensus 125 ~~~l~ 129 (380)
++-.|
T Consensus 78 ~l~~k 82 (224)
T COG2323 78 YLSLK 82 (224)
T ss_pred HHHhc
Confidence 55544
No 139
>PF15050 SCIMP: SCIMP protein
Probab=40.77 E-value=1.4e+02 Score=23.39 Aligned_cols=20 Identities=30% Similarity=0.552 Sum_probs=9.0
Q ss_pred hhhHHHHHHHH----HHHHHHHhh
Q 016904 284 LNIIGYAIALC----GVVMYNYIK 303 (380)
Q Consensus 284 ~~~~G~~lii~----g~~~~~~~~ 303 (380)
+-++..++|++ |+++|...+
T Consensus 9 WiiLAVaII~vS~~lglIlyCvcR 32 (133)
T PF15050_consen 9 WIILAVAIILVSVVLGLILYCVCR 32 (133)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455544 444454343
No 140
>KOG4583 consensus Membrane-associated ER protein involved in stress response (contains ubiquitin-like domain) [Posttranslational modification, protein turnover, chaperones]
Probab=39.89 E-value=1.2e+02 Score=28.36 Aligned_cols=7 Identities=43% Similarity=0.595 Sum_probs=2.8
Q ss_pred HHHHHhc
Q 016904 270 ALSTVIF 276 (380)
Q Consensus 270 ~~~~l~~ 276 (380)
+++++.|
T Consensus 275 llSilyf 281 (391)
T KOG4583|consen 275 LLSILYF 281 (391)
T ss_pred HHHHHHH
Confidence 3344444
No 141
>KOG3762 consensus Predicted transporter [General function prediction only]
Probab=38.97 E-value=2.3e+02 Score=28.93 Aligned_cols=18 Identities=17% Similarity=0.242 Sum_probs=8.2
Q ss_pred hhhHHHHHHH--HHHHHHHH
Q 016904 284 LNIIGYAIAL--CGVVMYNY 301 (380)
Q Consensus 284 ~~~~G~~lii--~g~~~~~~ 301 (380)
.++.|+++++ +....+++
T Consensus 529 f~~~giAcl~~l~~~~~iq~ 548 (618)
T KOG3762|consen 529 FRIFGIACLVTLALFISIQL 548 (618)
T ss_pred HHHHHHHHHHHHHHHHHhhh
Confidence 4455554444 44444443
No 142
>COG1742 Uncharacterized conserved protein [Function unknown]
Probab=38.59 E-value=70 Score=24.41 Aligned_cols=45 Identities=22% Similarity=0.101 Sum_probs=37.2
Q ss_pred HHHhhhhhhHHHHHHHHHhcCCCCcchhhhHHHHHHHHHHHHHHHh
Q 016904 257 IRVAGVLKDWILIALSTVIFPESTITGLNIIGYAIALCGVVMYNYI 302 (380)
Q Consensus 257 ~s~~~~l~~v~~~~~~~l~~~~~~~~~~~~~G~~lii~g~~~~~~~ 302 (380)
.+.++-.-.+.++++.+.+- +..++...++|.+++++|+.+..+.
T Consensus 61 YAAYGGvyI~~sL~W~~~Vd-g~~pdr~D~~Ga~icl~G~~vil~~ 105 (109)
T COG1742 61 YAAYGGVYIAASLAWLWVVD-GVRPDRYDWIGAAICLAGVAVILFG 105 (109)
T ss_pred HHHhcchHHHHHHHHHHHHc-CcCCcHHHhhhHHHHHhceeeeEeC
Confidence 45566677888899999998 6679999999999999998776554
No 143
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=37.79 E-value=2.7e+02 Score=24.09 Aligned_cols=24 Identities=8% Similarity=0.086 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q 016904 161 GTLYQVTGIVAEALRLVLTQVLLQ 184 (380)
Q Consensus 161 G~~l~l~s~~~~a~~~v~~~~~~~ 184 (380)
|++-.++.++..++...+..+.++
T Consensus 112 gi~tli~~~i~~G~~~~~~~~~i~ 135 (206)
T PF06570_consen 112 GIITLILVSIVGGLVFYFIFKYIY 135 (206)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHh
Confidence 655555555555444444444444
No 144
>PF15345 TMEM51: Transmembrane protein 51
Probab=36.70 E-value=75 Score=28.05 Aligned_cols=22 Identities=18% Similarity=0.143 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHhhhhhhh
Q 016904 287 IGYAIALCGVVMYNYIKVKDVR 308 (380)
Q Consensus 287 ~G~~lii~g~~~~~~~~~~~~~ 308 (380)
+|+++.++.+++..+.|+|+..
T Consensus 67 ~Gv~LLLLSICL~IR~KRr~rq 88 (233)
T PF15345_consen 67 SGVALLLLSICLSIRDKRRRRQ 88 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 5777777888776665555443
No 145
>COG3169 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=35.79 E-value=1.9e+02 Score=21.83 Aligned_cols=32 Identities=13% Similarity=0.093 Sum_probs=27.1
Q ss_pred HHHHHHHhccccccHhHHHHHHHHHhhhheee
Q 016904 120 TFFMAVLCGTDKARLDVFLNMVLVSVGVVISS 151 (380)
Q Consensus 120 v~ll~~~~l~ek~~~~~~~~v~l~~~Gv~l~~ 151 (380)
-..++++++||.+++..+.+..+...|+.++.
T Consensus 83 Fv~Fsvfyl~epl~~~~l~a~~~i~gav~fiF 114 (116)
T COG3169 83 FVPFSVFYLKEPLRWNYLWAFLLILGAVYFIF 114 (116)
T ss_pred HHHHHHHHHcCcchHHHHHHHHHHHHHHHHhc
Confidence 34578999999999999999999988887653
No 146
>PF03729 DUF308: Short repeat of unknown function (DUF308); InterPro: IPR005325 This represents a group of short repeats that occurs in a limited number of membrane proteins. It may divide further in short repeats of around 7-10 residues of the pattern G-#-X(2)-#(2)-X (#=hydrophobic).
Probab=35.06 E-value=1.2e+02 Score=20.69 Aligned_cols=26 Identities=4% Similarity=0.284 Sum_probs=17.9
Q ss_pred HHHHHHHhhhheeeeccceehHHHHH
Q 016904 138 LNMVLVSVGVVISSYGEIHFNIVGTL 163 (380)
Q Consensus 138 ~~v~l~~~Gv~l~~~~~~~~~~~G~~ 163 (380)
.|++..+.|+.++..++........+
T Consensus 2 ~Gil~iv~Gi~~l~~p~~~~~~~~~i 27 (72)
T PF03729_consen 2 SGILFIVLGILLLFNPDASLAALAII 27 (72)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 47788888888888877655544433
No 147
>PRK11715 inner membrane protein; Provisional
Probab=34.38 E-value=4.6e+02 Score=25.82 Aligned_cols=122 Identities=16% Similarity=0.069 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHHHHHhhcCCccccccchhhHHHHHHHHHHHH
Q 016904 160 VGTLYQVTGIVAEALRLVLTQVLLQKKGLTLNPITSLYYIAPCSFVFLFVPWYLLEKPMMEVSQIQFNFWIFFSNALCAL 239 (380)
Q Consensus 160 ~G~~l~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (380)
.|++++.+.-+++-+.-++.+ ..+||.+........+...++... +.|...+ ...|++...+++..
T Consensus 306 YgiLFI~LTF~~fFlfE~~~~-------~~iHpiQYlLVGlAl~lFYLLLLS-lSEHigF------~~AYliAa~a~v~l 371 (436)
T PRK11715 306 YAILFIALTFAAFFLFELLKK-------LRIHPVQYLLVGLALVLFYLLLLS-LSEHIGF------TLAYLIAALACVLL 371 (436)
T ss_pred HHHHHHHHHHHHHHHHHHhcC-------ceecHHHHHHHHHHHHHHHHHHHH-HHhhhch------HHHHHHHHHHHHHH
Confidence 576666655444444333222 237888877654444433333333 2333222 11233333333333
Q ss_pred HHHHHHHHHHhhcchhHHHHhhhhhhHHHHHHHHHhcCCCCcchhhhHHHHHHHHHHHHH
Q 016904 240 ALNFSIFLVIGRTGAVTIRVAGVLKDWILIALSTVIFPESTITGLNIIGYAIALCGVVMY 299 (380)
Q Consensus 240 ~~~~~~~~~i~~~~a~~~s~~~~l~~v~~~~~~~l~~~~~~~~~~~~~G~~lii~g~~~~ 299 (380)
...+... .++.. --...+...+.-+.+++.+.+-. |+ -..+.--...+++.++++|
T Consensus 372 i~~Y~~~-vl~~~-k~g~~~~~~L~~LYg~Ly~lLq~-ED-yALL~GSllLF~~La~vM~ 427 (436)
T PRK11715 372 IGFYLSA-VLRSW-KRGLLFAAALAALYGVLYGLLQS-ED-YALLLGSLLLFAVLALVMF 427 (436)
T ss_pred HHHHHHH-HHhcc-hHHHHHHHHHHHHHHHHHHHHHH-hH-HHHHHHHHHHHHHHHHHHh
Confidence 3323222 22221 11223444555566777777666 55 4443333333333444443
No 148
>PF11139 DUF2910: Protein of unknown function (DUF2910); InterPro: IPR021315 Some members in this bacterial family annotate the proteins as cytochrome C biogenesis proteins however this cannot be confirmed. Currently no function for this family is known.
Probab=34.30 E-value=3.1e+02 Score=23.77 Aligned_cols=37 Identities=24% Similarity=0.409 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHhccccccH-------------hHHHHHHHHHhhhhee
Q 016904 114 ALMPVATFFMAVLCGTDKARL-------------DVFLNMVLVSVGVVIS 150 (380)
Q Consensus 114 ~~~pi~v~ll~~~~l~ek~~~-------------~~~~~v~l~~~Gv~l~ 150 (380)
...|+.+.++.+.+.+||... +++.++++.++|+.++
T Consensus 160 ~~~~~~~pll~~~~~~~r~~~~l~r~~~wl~~~~~~i~~~i~~i~G~~l~ 209 (214)
T PF11139_consen 160 ASLPALLPLLAYLVAPERAEPWLERLRSWLRRHSRQILAVILLIVGALLL 209 (214)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHH
Confidence 467888888888887776532 2356666667776554
No 149
>PF06123 CreD: Inner membrane protein CreD; InterPro: IPR010364 This family consists of several bacterial CreD or Cet inner membrane proteins. Dominant mutations of the cet gene of Escherichia coli result in tolerance to colicin E2 and increased amounts of an inner membrane protein with a Mr of 42,000. The cet gene is shown to be in the same operon as the phoM gene, which is required in a phoR background for expression of the structural gene for alkaline phosphatase, phoA. Although the Cet protein is not required for phoA expression, it has been suggested that the Cet protein has an enhancing effect on the transcription of phoA [].
Probab=33.31 E-value=4.8e+02 Score=25.66 Aligned_cols=59 Identities=15% Similarity=0.079 Sum_probs=38.5
Q ss_pred HhccccccHhHHHHHHHHHhh--hheeeeccceehHHHHHHHHHHHHHHHHHHHHHHHHhhhC
Q 016904 126 LCGTDKARLDVFLNMVLVSVG--VVISSYGEIHFNIVGTLYQVTGIVAEALRLVLTQVLLQKK 186 (380)
Q Consensus 126 ~~l~ek~~~~~~~~v~l~~~G--v~l~~~~~~~~~~~G~~l~l~s~~~~a~~~v~~~~~~~~~ 186 (380)
++.|.++++.|++-++++++= +.+++..|+- ..+..+.+.|+.|-.+-..+....+++.
T Consensus 317 ~~~~~~iHpiQY~LVGlAl~lFYlLLLSlSEhi--~F~~AYliAa~a~i~Li~~Y~~~vl~~~ 377 (430)
T PF06123_consen 317 LLSKLRIHPIQYLLVGLALVLFYLLLLSLSEHI--GFNLAYLIAALACIGLISLYLSSVLKSW 377 (430)
T ss_pred HHhcCcccHHHHHHHHHHHHHHHHHHHHHHhhh--chHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 345778888887666555543 3344445531 2356777778888888888888887763
No 150
>TIGR01167 LPXTG_anchor LPXTG-motif cell wall anchor domain. A common feature of this proteins containing this domain appears to be a high proportion of charged and zwitterionic residues immediatedly upstream of the LPXTG motif. This model differs from other descriptions of the LPXTG region by including a portion of that upstream charged region.
Probab=32.82 E-value=41 Score=19.51 Aligned_cols=20 Identities=25% Similarity=0.198 Sum_probs=11.3
Q ss_pred CCCcchhhhHHHHHHHHHHH
Q 016904 278 ESTITGLNIIGYAIALCGVV 297 (380)
Q Consensus 278 ~~~~~~~~~~G~~lii~g~~ 297 (380)
|+.-.+..++|.+++..+.+
T Consensus 7 ~~~~~~~~~~G~~l~~~~~~ 26 (34)
T TIGR01167 7 ESGNSLLLLLGLLLLGLGGL 26 (34)
T ss_pred CcccHHHHHHHHHHHHHHHH
Confidence 44456677778744444333
No 151
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family. This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.
Probab=32.73 E-value=4.9e+02 Score=25.64 Aligned_cols=121 Identities=12% Similarity=0.141 Sum_probs=0.0
Q ss_pred HHhhhCCCCCCHHHHHHHHHHHHHHHHHHHHHhhcCCccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhcc--hhHHH
Q 016904 181 VLLQKKGLTLNPITSLYYIAPCSFVFLFVPWYLLEKPMMEVSQIQFNFWIFFSNALCALALNFSIFLVIGRTG--AVTIR 258 (380)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~--a~~~s 258 (380)
+.+.+...+-.|.........++.+..+..... ........-.......+.+.........+++.. +....
T Consensus 320 ~~~~~v~~~~tP~~Ai~~~~~i~~~~~~~~~~~-------~~~~~~l~~~~~~~~~i~y~~~~~a~~~lr~~~~~~~~~~ 392 (473)
T TIGR00905 320 KIFGRVNKNGAPSVALLLTNILIQLFLLLTLLT-------SSAYNVLVSLAVVMILVPYLLSAAYLLKLAKVGTYPKIKN 392 (473)
T ss_pred HHHHhhCccCCCHHHHHHHHHHHHHHHHHHHcc-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccc
Q ss_pred HhhhhhhHHHHHHHHHhcCCCCcchhhhHHHHHHHHHHHHHHHhhhhhhhh
Q 016904 259 VAGVLKDWILIALSTVIFPESTITGLNIIGYAIALCGVVMYNYIKVKDVRA 309 (380)
Q Consensus 259 ~~~~l~~v~~~~~~~l~~~~~~~~~~~~~G~~lii~g~~~~~~~~~~~~~~ 309 (380)
.....-++++.++..++. -..-....+.|.+++..|..+|.+.+++++++
T Consensus 393 ~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~y~~~~~~~~~~ 442 (473)
T TIGR00905 393 RKALIVGVIACVYSIWLL-YAAGLKYLLLGFILYAPGIIFYGRARKERGKH 442 (473)
T ss_pred chHHHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHHHHHHHHHHHhcCCC
No 152
>MTH00057 ND6 NADH dehydrogenase subunit 6; Provisional
Probab=32.48 E-value=3.2e+02 Score=23.34 Aligned_cols=25 Identities=8% Similarity=0.191 Sum_probs=15.4
Q ss_pred HHHHHHhcCCCCcchhhhHHHHHHHH
Q 016904 269 IALSTVIFPESTITGLNIIGYAIALC 294 (380)
Q Consensus 269 ~~~~~l~~~~~~~~~~~~~G~~lii~ 294 (380)
-.+|..++ .+-.-+..++|..+.++
T Consensus 132 ~~iG~~Ly-t~Y~l~fe~~s~lLLvA 156 (186)
T MTH00057 132 EVLGRVLY-TDYYYLFILASFILLVA 156 (186)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 34567777 44466677777766543
No 153
>PF11044 TMEMspv1-c74-12: Plectrovirus spv1-c74 ORF 12 transmembrane protein; InterPro: IPR022743 This is a group of proteins expressed by Plectroviruses. The Plectroviruses are single-stranded DNA viruses belonging to the Inoviridae. This entry represents putative transmembrane proteins of unknown function.
Probab=32.26 E-value=65 Score=20.29 Aligned_cols=18 Identities=22% Similarity=0.178 Sum_probs=10.0
Q ss_pred cchhhhHHHHHHHHHHHH
Q 016904 281 ITGLNIIGYAIALCGVVM 298 (380)
Q Consensus 281 ~~~~~~~G~~lii~g~~~ 298 (380)
++|+.++=.++|+.|++.
T Consensus 2 p~wlt~iFsvvIil~If~ 19 (49)
T PF11044_consen 2 PTWLTTIFSVVIILGIFA 19 (49)
T ss_pred chHHHHHHHHHHHHHHHH
Confidence 455555555566655543
No 154
>COG3169 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=32.05 E-value=1e+02 Score=23.28 Aligned_cols=29 Identities=10% Similarity=0.171 Sum_probs=24.5
Q ss_pred HHHHHhcCCCCcchhhhHHHHHHHHHHHHH
Q 016904 270 ALSTVIFPESTITGLNIIGYAIALCGVVMY 299 (380)
Q Consensus 270 ~~~~l~~~~~~~~~~~~~G~~lii~g~~~~ 299 (380)
.++++.+ .|++.+.++.|..++..|++..
T Consensus 85 ~Fsvfyl-~epl~~~~l~a~~~i~gav~fi 113 (116)
T COG3169 85 PFSVFYL-KEPLRWNYLWAFLLILGAVYFI 113 (116)
T ss_pred HHHHHHH-cCcchHHHHHHHHHHHHHHHHh
Confidence 4678888 7789999999999999888753
No 155
>PRK11715 inner membrane protein; Provisional
Probab=31.81 E-value=5.1e+02 Score=25.53 Aligned_cols=58 Identities=14% Similarity=0.024 Sum_probs=37.5
Q ss_pred hccccccHhHHHHHHHHHhh--hheeeeccceehHHHHHHHHHHHHHHHHHHHHHHHHhhhC
Q 016904 127 CGTDKARLDVFLNMVLVSVG--VVISSYGEIHFNIVGTLYQVTGIVAEALRLVLTQVLLQKK 186 (380)
Q Consensus 127 ~l~ek~~~~~~~~v~l~~~G--v~l~~~~~~~~~~~G~~l~l~s~~~~a~~~v~~~~~~~~~ 186 (380)
+-|.++++.|++-++++++= +.+++..|+- -.+..+.+.|+.|-.+-..+....+++.
T Consensus 324 ~~~~~iHpiQYlLVGlAl~lFYLLLLSlSEHi--gF~~AYliAa~a~v~li~~Y~~~vl~~~ 383 (436)
T PRK11715 324 LKKLRIHPVQYLLVGLALVLFYLLLLSLSEHI--GFTLAYLIAALACVLLIGFYLSAVLRSW 383 (436)
T ss_pred hcCceecHHHHHHHHHHHHHHHHHHHHHHhhh--chHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 44668888887666655543 3344445532 2356777777778888788888877763
No 156
>KOG4831 consensus Unnamed protein [Function unknown]
Probab=31.43 E-value=44 Score=25.58 Aligned_cols=52 Identities=17% Similarity=0.235 Sum_probs=36.2
Q ss_pred HHHhhcchhHH-HHhhhhhhHHHHHHHHHhcCCCCcchhhhHHHHHHHHHHHHH
Q 016904 247 LVIGRTGAVTI-RVAGVLKDWILIALSTVIFPESTITGLNIIGYAIALCGVVMY 299 (380)
Q Consensus 247 ~~i~~~~a~~~-s~~~~l~~v~~~~~~~l~~~~~~~~~~~~~G~~lii~g~~~~ 299 (380)
+.+++.+-+.+ -+.+.+.-+++...|..+- ||......++|..+++.|+.+.
T Consensus 71 ~tLa~a~islavpv~nsltfafta~~G~~LG-E~~~g~~a~lGt~liv~Gi~Lc 123 (125)
T KOG4831|consen 71 LTLASAPISLAVPVTNSLTFAFTAIFGKALG-EETQGGLALLGTSLIVFGIWLC 123 (125)
T ss_pred HHHhcCCceeeeeecchhHHHHHHHHHHHhc-cccccceeehhhhHHhhhhhhe
Confidence 34455443322 2344556667777888776 8888899999999999998763
No 157
>COG4657 RnfA Predicted NADH:ubiquinone oxidoreductase, subunit RnfA [Energy production and conversion]
Probab=30.29 E-value=3.3e+02 Score=22.78 Aligned_cols=64 Identities=19% Similarity=0.268 Sum_probs=45.3
Q ss_pred HHHHHHHHhccccccHhHHHHHHH-------HHhhhheeeeccceehHHHHHHHHHHHHHHHHHHHHHHHH
Q 016904 119 ATFFMAVLCGTDKARLDVFLNMVL-------VSVGVVISSYGEIHFNIVGTLYQVTGIVAEALRLVLTQVL 182 (380)
Q Consensus 119 ~v~ll~~~~l~ek~~~~~~~~v~l-------~~~Gv~l~~~~~~~~~~~G~~l~l~s~~~~a~~~v~~~~~ 182 (380)
.+=..+.++.|..|+..+.+|+.+ ++.|++++...+...-.-.++.++.+++.+++..++..-+
T Consensus 84 ~VQf~Em~v~KtsP~LYr~LGIfLPLITTNCaVLgvaLln~~~~~~f~qsv~~gf~a~lGfslvmvlfA~i 154 (193)
T COG4657 84 VVQFTEMVVRKTSPTLYRLLGIFLPLITTNCAVLGVALLNINEGHNFLQSVVYGFGAALGFSLVMVLFAAI 154 (193)
T ss_pred HHHHHHHHHHccCHHHHHHHHHhhhhHhhchHHHHHHHHHhhhhhhHHHHHHHHhhhHhhHHHHHHHHHHH
Confidence 334456677888899999999874 5668877766554333456778888888888877776554
No 158
>PF04246 RseC_MucC: Positive regulator of sigma(E), RseC/MucC; InterPro: IPR007359 This bacterial family of integral membrane proteins represents a positive regulator of the sigma(E) transcription factor, namely RseC/MucC. The sigma(E) transcription factor is up-regulated by cell envelope protein misfolding, and regulates the expression of genes that are collectively termed ECF (devoted to Extra-Cellular Functions) []. In Pseudomonas aeruginosa, derepression of sigma(E) is associated with the alginate-overproducing phenotype characteristic of chronic respiratory tract colonization in cystic fibrosis patients. The mechanism by which RseC/MucC positively regulates the sigma(E) transcription factor is unknown. RseC is also thought to have a role in thiamine biosynthesis in Salmonella typhimurium []. In addition, this family also includes an N-terminal part of RnfF, a Rhodobacter capsulatus protein, of unknown function, that is essential for nitrogen fixation. This protein also contains a domain found in ApbE protein IPR003374 from INTERPRO, which is itself involved in thiamine biosynthesis.
Probab=30.02 E-value=1.2e+02 Score=24.18 Aligned_cols=24 Identities=8% Similarity=-0.010 Sum_probs=14.5
Q ss_pred chhHHHHhhhhhhHHHHHHHHHhc
Q 016904 253 GAVTIRVAGVLKDWILIALSTVIF 276 (380)
Q Consensus 253 ~a~~~s~~~~l~~v~~~~~~~l~~ 276 (380)
.....+++.|+-|++.++.+.++.
T Consensus 66 ~~~~aa~l~Y~lPll~li~g~~l~ 89 (135)
T PF04246_consen 66 SLLKAAFLVYLLPLLALIAGAVLG 89 (135)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666666766666666554
No 159
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=29.03 E-value=3.8e+02 Score=23.15 Aligned_cols=24 Identities=29% Similarity=0.463 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 016904 159 IVGTLYQVTGIVAEALRLVLTQVL 182 (380)
Q Consensus 159 ~~G~~l~l~s~~~~a~~~v~~~~~ 182 (380)
+-+....++++++++++..+.||+
T Consensus 178 l~~~~~iiig~i~~~~~~~lkkk~ 201 (206)
T PF06570_consen 178 LPPWVYIIIGVIAFALRFYLKKKY 201 (206)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHh
Confidence 346677788888888887776664
No 160
>PF05961 Chordopox_A13L: Chordopoxvirus A13L protein; InterPro: IPR009236 This family consists of A13L proteins from the Chordopoxviruses. A13L or p8 is one of the three most abundant membrane proteins of the intracellular mature Vaccinia virus [].
Probab=27.66 E-value=67 Score=22.33 Aligned_cols=21 Identities=19% Similarity=0.452 Sum_probs=16.1
Q ss_pred hhhHHHHHHHHHHHHHHHhhh
Q 016904 284 LNIIGYAIALCGVVMYNYIKV 304 (380)
Q Consensus 284 ~~~~G~~lii~g~~~~~~~~~ 304 (380)
.-+++++++++|.++|..-.+
T Consensus 5 ~iLi~ICVaii~lIlY~iYnr 25 (68)
T PF05961_consen 5 FILIIICVAIIGLILYGIYNR 25 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 456888999999999876543
No 161
>PF05038 Cytochrom_B558a: Cytochrome Cytochrome b558 alpha-subunit; InterPro: IPR007732 Flavocytochrome b558 is the catalytic core of the respiratory-burst oxidase, an enzyme complex that catalyzes the NADPH-dependent reduction of O2 into the superoxide anion O2 in phagocytic cells. Flavocytochrome b558 is anchored in the plasma membrane. It is a heterodimer that consists of a large glycoprotein gp91phox (phox forphagocyte oxidase) (beta subunit) and a small protein p22phox (alpha subunit). The other components of the respiratory-burst oxidase are water-soluble proteins of cytosolic origin, namely p67phox, p47phox, p40phox and Rac. Upon cell stimulation, they assemble with the membrane-bound flavocytochrome b558 which becomes activated and generates O2- []. ; GO: 0020037 heme binding; PDB: 1WLP_A.
Probab=27.07 E-value=7.4 Score=32.46 Aligned_cols=50 Identities=18% Similarity=0.177 Sum_probs=0.0
Q ss_pred HHHhhcchhHHHHhhhhhhHHHHHHHHHhcCCCCcchhhhHHHHHHHHHHHHHHHh
Q 016904 247 LVIGRTGAVTIRVAGVLKDWILIALSTVIFPESTITGLNIIGYAIALCGVVMYNYI 302 (380)
Q Consensus 247 ~~i~~~~a~~~s~~~~l~~v~~~~~~~l~~~~~~~~~~~~~G~~lii~g~~~~~~~ 302 (380)
.+++..++++.+. +++-++-..+++.-+ +..-+++|.++..++..+|...
T Consensus 74 ~vv~~lgpv~~NY--YvRa~L~~~lsVP~~----F~lpTiLG~vcL~ias~iYl~A 123 (186)
T PF05038_consen 74 PVVKKLGPVTRNY--YVRAVLYLGLSVPCG----FLLPTILGGVCLAIASIIYLLA 123 (186)
T ss_dssp --------------------------------------------------------
T ss_pred HHHHHhCccchhH--HHHHHHHHHHHhhhH----hhHHHHHHHHHHHHHHHHHHHH
Confidence 3456666665443 555555556665544 6667788888888888888754
No 162
>PF04341 DUF485: Protein of unknown function, DUF485; InterPro: IPR007436 This family includes several putative integral membrane proteins.
Probab=26.95 E-value=2.6e+02 Score=20.63 Aligned_cols=57 Identities=14% Similarity=0.170 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCc-C-CCcHHHHHHHHHHHHHHHHHHHHHHhh
Q 016904 11 LTYLYLLIYILLSSGVILYNKWVLSPKYF-N-FPFPITLTMIHMGFSGVVAFFLVRVFK 67 (380)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~k~~l~~~~~-~-~~~p~~~~~~r~~~~~~~l~~~~~~~~ 67 (380)
...+..+.+++......-+.+..+..+.. + ++.-+.+...++.+++++...+.+..+
T Consensus 20 ~l~~i~l~~y~~~~ll~a~~p~~m~~~v~~G~~t~g~~~g~~~~~~~~~l~~~Yv~~An 78 (91)
T PF04341_consen 20 PLSAIFLVLYFGFVLLSAFAPELMATPVFPGSLTLGIVLGLGQIVFAWVLTWLYVRRAN 78 (91)
T ss_pred HHHHHHHHHHHHHHHHHHHCHHHHcCcccCCCcCHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34444555555556666677777776644 4 665677888899888888877766433
No 163
>KOG1935 consensus Membrane protein Patched/PTCH [Signal transduction mechanisms]
Probab=25.72 E-value=8.7e+02 Score=26.26 Aligned_cols=24 Identities=29% Similarity=0.313 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 016904 159 IVGTLYQVTGIVAEALRLVLTQVL 182 (380)
Q Consensus 159 ~~G~~l~l~s~~~~a~~~v~~~~~ 182 (380)
..|.++..++.+..+...++.--+
T Consensus 916 Lrg~l~~~IcIil~~vf~vcs~ll 939 (1143)
T KOG1935|consen 916 LRGNLLQAICIILLAVFCVCSVLL 939 (1143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 468888888888888877776655
No 164
>PRK15432 autoinducer 2 ABC transporter permease LsrC; Provisional
Probab=25.63 E-value=2.8e+02 Score=26.30 Aligned_cols=22 Identities=14% Similarity=0.013 Sum_probs=13.7
Q ss_pred chhhhHHHHHHHHHHHHHHHhh
Q 016904 282 TGLNIIGYAIALCGVVMYNYIK 303 (380)
Q Consensus 282 ~~~~~~G~~lii~g~~~~~~~~ 303 (380)
.+.++++.+++++.+......+
T Consensus 287 ~~~~ii~g~lll~vl~~~~~~~ 308 (344)
T PRK15432 287 WWNDFIAGLVLLGVLVFDGRLR 308 (344)
T ss_pred HHHHHHHHHHhhhhhhHHHHHH
Confidence 4566777777777666654433
No 165
>KOG4812 consensus Golgi-associated protein/Nedd4 WW domain-binding protein [General function prediction only]
Probab=24.06 E-value=3.4e+02 Score=24.27 Aligned_cols=20 Identities=10% Similarity=0.345 Sum_probs=15.1
Q ss_pred cchhhhHHHHHHHHHHHHHH
Q 016904 281 ITGLNIIGYAIALCGVVMYN 300 (380)
Q Consensus 281 ~~~~~~~G~~lii~g~~~~~ 300 (380)
++...|++-+++++|.++..
T Consensus 219 ~n~q~wLwwi~~vlG~ll~l 238 (262)
T KOG4812|consen 219 FNGQYWLWWIFLVLGLLLFL 238 (262)
T ss_pred cccchHHHHHHHHHHHHHHH
Confidence 45567888888888887755
No 166
>PF15330 SIT: SHP2-interacting transmembrane adaptor protein, SIT
Probab=22.37 E-value=3.7e+02 Score=20.71 Aligned_cols=20 Identities=5% Similarity=0.089 Sum_probs=9.1
Q ss_pred hhHHHHH-HHHHHHHHHHhhh
Q 016904 285 NIIGYAI-ALCGVVMYNYIKV 304 (380)
Q Consensus 285 ~~~G~~l-ii~g~~~~~~~~~ 304 (380)
.++|.+| +.++.-+..|...
T Consensus 5 ~il~llLll~l~asl~~wr~~ 25 (107)
T PF15330_consen 5 GILALLLLLSLAASLLAWRMK 25 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 3455553 3344445555443
No 167
>TIGR00806 rfc RFC reduced folate carrier. Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.
Probab=22.28 E-value=8.2e+02 Score=24.69 Aligned_cols=38 Identities=8% Similarity=0.143 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHhhcchhHHHHhhhhhhHHHHHH
Q 016904 234 NALCALALNFSIFLVIGRTGAVTIRVAGVLKDWILIAL 271 (380)
Q Consensus 234 ~~~~~~~~~~~~~~~i~~~~a~~~s~~~~l~~v~~~~~ 271 (380)
.+.-.+...+..+..-+..+--..+++--++..++.++
T Consensus 364 ~~~y~flitia~~~iA~~L~~~~~aLvFGiNtfvAl~L 401 (511)
T TIGR00806 364 RGIYQFLVPIATFQIASSLSKELCALVFGINTFVATAL 401 (511)
T ss_pred HHHHHHHHHHHHHHHHHHhcccceEEEEecHHHHHHHH
Confidence 33333333333333334444333344444444444443
No 168
>PF06365 CD34_antigen: CD34/Podocalyxin family; InterPro: IPR013836 This family consists of several mammalian CD34 antigen proteins. The CD34 antigen is a human leukocyte membrane protein expressed specifically by lymphohematopoietic progenitor cells. CD34 is a phosphoprotein. Activation of protein kinase C (PKC) has been found to enhance CD34 phosphorylation [, ]. This family contains several eukaryotic podocalyxin proteins. Podocalyxin is a major membrane protein of the glomerular epithelium and is thought to be involved in maintenance of the architecture of the foot processes and filtration slits characteristic of this unique epithelium by virtue of its high negative charge. Podocalyxin functions as an anti-adhesin that maintains an open filtration pathway between neighbouring foot processes in the glomerular epithelium by charge repulsion [].
Probab=21.78 E-value=2.8e+02 Score=24.09 Aligned_cols=16 Identities=13% Similarity=-0.060 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHhhh
Q 016904 289 YAIALCGVVMYNYIKV 304 (380)
Q Consensus 289 ~~lii~g~~~~~~~~~ 304 (380)
+.+++++...|...++
T Consensus 112 lLla~~~~~~Y~~~~R 127 (202)
T PF06365_consen 112 LLLAILLGAGYCCHQR 127 (202)
T ss_pred HHHHHHHHHHHHhhhh
Confidence 4555556555555443
No 169
>PF00909 Ammonium_transp: Ammonium Transporter Family; InterPro: IPR024041 This ammonium transporter domain consists of a duplication of 2 structural repeats of five helices each plus one extra C-terminal helix. It has been described as a channel that spans the membrane 11 times [].; PDB: 3B9Z_A 3B9Y_A 3B9W_A 3BHS_A 2B2H_A 2B2J_A 2B2F_A 2B2I_A 2NPG_A 2NUU_E ....
Probab=21.52 E-value=7.4e+02 Score=23.93 Aligned_cols=197 Identities=14% Similarity=0.063 Sum_probs=0.0
Q ss_pred HHHHHHHHhccccccHh-------HHHHHHHHHhhhheeeeccceehH-----------H-HHHHHHHHHHHHHHHHHHH
Q 016904 119 ATFFMAVLCGTDKARLD-------VFLNMVLVSVGVVISSYGEIHFNI-----------V-GTLYQVTGIVAEALRLVLT 179 (380)
Q Consensus 119 ~v~ll~~~~l~ek~~~~-------~~~~v~l~~~Gv~l~~~~~~~~~~-----------~-G~~l~l~s~~~~a~~~v~~ 179 (380)
+..+...+++++|..+. .--+..+..+|..++...=..+|. . ..+-..+++.+.++.....
T Consensus 162 ~~gL~~a~~lg~R~~~~~~~~~~~~~~s~~~~~lG~~lLw~gW~gFN~gs~~~~~~~~~~~~~~nT~la~a~g~l~~~~~ 241 (399)
T PF00909_consen 162 VFGLAAAIVLGPRRGRFDGKPNPIPPHSPPLAMLGTLLLWFGWFGFNAGSALAANGRAWLRAAVNTLLAAAAGGLTWLLI 241 (399)
T ss_dssp HHHHHHHHHH--CTTTTGTTTSS--HCHHHHHHHHHHHHHHHHHHHHHCCGSSSSHHHHH-HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhheeeCCCCCcccccccCCCCCcHHHhhhhHHHHHHHhcccccccccccCCccchhhhhhhhhhHHHHHHHHHHh
Q ss_pred HHHhhhCCCCCCHHHHHHHHHHHHHHHHHHHHHhhcCCccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHH
Q 016904 180 QVLLQKKGLTLNPITSLYYIAPCSFVFLFVPWYLLEKPMMEVSQIQFNFWIFFSNALCALALNFSIFLVIGRTGAVTIRV 259 (380)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~a~~~s~ 259 (380)
.++.+++ ..........+.+.+...+.....+.... ..+-+.++.+.+...-....-.+.-+|.-+-.
T Consensus 242 ~~~~~gk----~~~~~~~nG~laGlVaita~~~~v~p~~A--------~~iG~iag~i~~~~~~~l~~~~~iDD~~~~~~ 309 (399)
T PF00909_consen 242 SYLLSGK----WSMVGICNGALAGLVAITAGAGYVTPWGA--------LLIGAIAGLISYFGVSWLLKRLKIDDPVGAFA 309 (399)
T ss_dssp HHHHCSS------HHHHHHHHHHHHHHHTTTTTTS-HHHH--------HHHHHHHHHHHHHHHHHHHHHHTS-HTTGHHH
T ss_pred hhccccc----cchhhhhhhhhhhhhheecccCCCcHHHH--------HHhhhhHhhhhhhheecccceeEeccccceEe
Q ss_pred hhhhhhHHHHHHHHHhcCCCCcc----------------hhhhHHHHHHHHHHHHHHHhhhhhhhhccCCCCCCCCcccc
Q 016904 260 AGVLKDWILIALSTVIFPESTIT----------------GLNIIGYAIALCGVVMYNYIKVKDVRASSQLPAESIPDRIA 323 (380)
Q Consensus 260 ~~~l~~v~~~~~~~l~~~~~~~~----------------~~~~~G~~lii~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (380)
+...-=++..+..-++- .+... ..|++|.+.++.-.....+.-.+--+.-...+.++++|...
T Consensus 310 vHg~~Gi~G~i~~glfa-~~~~~~~~~~~~~~~~~~~~l~~Ql~g~~~~~~~~~~~s~i~~~~l~~~~~LRv~~~~E~~G 388 (399)
T PF00909_consen 310 VHGVGGIWGTILTGLFA-SPEVNYSDGYGGLFYGNGRQLGIQLLGIVVILAWSFVVSYIIFKILKKFGGLRVSEEDERVG 388 (399)
T ss_dssp HCHHHHHHHHHHHHHHC-CCHHCSS-SSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-SB--HHHHHH-
T ss_pred eeeccHHHHHHHHHHHh-ccccccccccccccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCHHHHhhC
Q ss_pred cchhh
Q 016904 324 KDWKL 328 (380)
Q Consensus 324 ~~~~~ 328 (380)
.+...
T Consensus 389 lD~~~ 393 (399)
T PF00909_consen 389 LDLSE 393 (399)
T ss_dssp HHHHH
T ss_pred CCHHH
No 170
>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]
Probab=21.45 E-value=7.6e+02 Score=23.99 Aligned_cols=132 Identities=15% Similarity=0.010 Sum_probs=62.8
Q ss_pred cccHhHHHHHHHHHHHHHHHHHHHh--ccccccHhHHHHHHHH--Hhhhhee-eeccceehH-HHHHHHHHHHHHHHHHH
Q 016904 103 HISVAFIQMLKALMPVATFFMAVLC--GTDKARLDVFLNMVLV--SVGVVIS-SYGEIHFNI-VGTLYQVTGIVAEALRL 176 (380)
Q Consensus 103 ~~~~~~~~il~~~~pi~v~ll~~~~--l~ek~~~~~~~~v~l~--~~Gv~l~-~~~~~~~~~-~G~~l~l~s~~~~a~~~ 176 (380)
.++.+.+..+.+.+-..+++.+.++ +-.|.++++.+-..+. .+|-++. ..++...-. .=++.++.....|+...
T Consensus 44 ~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l~lFi~~n~l~alAp~f~~Ll~aR~~~g~a~G~f~~i~~ 123 (394)
T COG2814 44 GVSEGAAGQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALFIVSNLLSALAPSFAVLLLARALAGLAHGVFWSIAA 123 (394)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555555555555555555544443 3356666664433222 2232222 222221111 22566777777777777
Q ss_pred HHHHHHhhhCCCCCCHHHHHHHHHHHHHHHHHHHHHhhcCCccccccchhhHHHHHHHHHHHH
Q 016904 177 VLTQVLLQKKGLTLNPITSLYYIAPCSFVFLFVPWYLLEKPMMEVSQIQFNFWIFFSNALCAL 239 (380)
Q Consensus 177 v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (380)
.+..++...+. .-....++......+.++-.|..-+..+ ..+|...++.+...++++.
T Consensus 124 ~~a~~lvpp~~-~~~Aiaiv~~G~tlA~v~GvPLGt~ig~----~~GWR~~F~~ia~l~ll~~ 181 (394)
T COG2814 124 ALAARLVPPGK-RGRALALVFTGLTLATVLGVPLGTFLGQ----LFGWRATFLAIAVLALLAL 181 (394)
T ss_pred HHHHHHcCccc-hhhHHHHHHHHHHHHHHHhccHHHHHHH----HhhHHHHHHHHHHHHHHHH
Confidence 77777755432 2244445554444555555555433321 1234444444444344443
No 171
>PRK10862 SoxR reducing system protein RseC; Provisional
Probab=21.20 E-value=2.4e+02 Score=23.31 Aligned_cols=16 Identities=6% Similarity=-0.020 Sum_probs=6.9
Q ss_pred HHHhhhhhhHHHHHHH
Q 016904 257 IRVAGVLKDWILIALS 272 (380)
Q Consensus 257 ~s~~~~l~~v~~~~~~ 272 (380)
.+.+.|+-|++.++.+
T Consensus 77 aa~lvYllPLl~li~g 92 (154)
T PRK10862 77 SALLVYMTPLVGLFLG 92 (154)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444443
No 172
>TIGR02611 conserved hypothetical protein TIGR02611. Members of this family are Actinobacterial putative proteins of about 150 amino acids in length with three apparent transmembrane helix and an unusual motif with consensus sequence PGPGW.
Probab=20.33 E-value=2.8e+02 Score=21.86 Aligned_cols=44 Identities=25% Similarity=0.359 Sum_probs=32.0
Q ss_pred HHHHHHHHHhhhheeeeccceehHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016904 136 VFLNMVLVSVGVVISSYGEIHFNIVGTLYQVTGIVAEALRLVLTQVLLQ 184 (380)
Q Consensus 136 ~~~~v~l~~~Gv~l~~~~~~~~~~~G~~l~l~s~~~~a~~~v~~~~~~~ 184 (380)
..+|.++..+|++++..++. |.+..+++....|......++.++
T Consensus 29 ~v~G~~~~~~Gi~ml~lPGp-----G~l~i~iGl~iLatEf~WA~r~L~ 72 (121)
T TIGR02611 29 LVVGWVVLIVGIITIPLPGP-----GWLTIFIGLAILSLEFVWAQRLLR 72 (121)
T ss_pred HHHHHHHHHHHHHHhccCCc-----hHHHHHHHHHHHHHhhHHHHHHHH
Confidence 36677788888888877764 566677777777777777777654
Done!