Query 016904
Match_columns 380
No_of_seqs 214 out of 1875
Neff 9.3
Searched_HMMs 29240
Date Mon Mar 25 05:43:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016904.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016904hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2i68_A Protein EMRE; transmemb 98.5 1.1E-07 3.8E-12 76.0 6.3 66 236-302 38-104 (137)
2 3b5d_A Multidrug transporter E 98.5 5.2E-07 1.8E-11 69.6 8.1 71 84-154 34-105 (110)
3 2i68_A Protein EMRE; transmemb 98.4 7.9E-07 2.7E-11 71.0 7.9 70 84-153 34-104 (137)
4 3b5d_A Multidrug transporter E 98.1 1.4E-05 4.6E-10 61.5 8.8 63 238-301 40-103 (110)
5 3l1l_A Arginine/agmatine antip 49.8 80 0.0028 29.2 9.7 22 284-305 409-430 (445)
6 3rko_J NADH-quinone oxidoreduc 20.1 3.5E+02 0.012 21.9 8.5 24 269-293 127-150 (184)
7 2jo1_A Phospholemman; FXYD1, N 19.0 1.9E+02 0.0064 19.4 4.3 18 286-303 22-39 (72)
8 4djk_A Probable glutamate/gamm 15.5 5.9E+02 0.02 23.6 9.1 15 287-301 450-464 (511)
9 3b9w_A Ammonium transporter fa 13.5 7.6E+02 0.026 22.8 18.4 192 53-251 151-346 (407)
10 2zxe_G FXYD10, phospholemman-l 13.4 96 0.0033 21.0 1.8 49 286-334 25-73 (74)
No 1
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=98.54 E-value=1.1e-07 Score=76.02 Aligned_cols=66 Identities=17% Similarity=0.165 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHHHhhcchhHHHHh-hhhhhHHHHHHHHHhcCCCCcchhhhHHHHHHHHHHHHHHHh
Q 016904 236 LCALALNFSIFLVIGRTGAVTIRVA-GVLKDWILIALSTVIFPESTITGLNIIGYAIALCGVVMYNYI 302 (380)
Q Consensus 236 ~~~~~~~~~~~~~i~~~~a~~~s~~-~~l~~v~~~~~~~l~~~~~~~~~~~~~G~~lii~g~~~~~~~ 302 (380)
++....++++..++++.++..+..+ ..+.|++++++|+++| +|++++.+++|+++|++|+++.+..
T Consensus 38 ~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~l-gE~ls~~~~~Gi~LIi~GV~ll~~~ 104 (137)
T 2i68_A 38 ICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFF-GQRLDLPAIIGMMLICAGVLIINLL 104 (137)
T ss_dssp HHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHH-C------CHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHh-CCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 3444455667889999999988777 8999999999999999 7779999999999999999987653
No 2
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=98.46 E-value=5.2e-07 Score=69.58 Aligned_cols=71 Identities=15% Similarity=0.206 Sum_probs=63.9
Q ss_pred hhHHHHHHHHHHHHhhhhhcccHhHHHHH-HHHHHHHHHHHHHHhccccccHhHHHHHHHHHhhhheeeecc
Q 016904 84 VPISAFFASSLWFGNTAYLHISVAFIQML-KALMPVATFFMAVLCGTDKARLDVFLNMVLVSVGVVISSYGE 154 (380)
Q Consensus 84 ~~~~~~~~~~~~~~~~al~~~~~~~~~il-~~~~pi~v~ll~~~~l~ek~~~~~~~~v~l~~~Gv~l~~~~~ 154 (380)
+...+++....++...++++.|.+.+..+ ..+.|+++++++++++||++++.+++|+.++++|++++...+
T Consensus 34 ~~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~~ 105 (110)
T 3b5d_A 34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 45556778888999999999999999888 799999999999999999999999999999999999876543
No 3
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=98.40 E-value=7.9e-07 Score=71.05 Aligned_cols=70 Identities=16% Similarity=0.207 Sum_probs=52.8
Q ss_pred hhHHHHHHHHHHHHhhhhhcccHhHHHHH-HHHHHHHHHHHHHHhccccccHhHHHHHHHHHhhhheeeec
Q 016904 84 VPISAFFASSLWFGNTAYLHISVAFIQML-KALMPVATFFMAVLCGTDKARLDVFLNMVLVSVGVVISSYG 153 (380)
Q Consensus 84 ~~~~~~~~~~~~~~~~al~~~~~~~~~il-~~~~pi~v~ll~~~~l~ek~~~~~~~~v~l~~~Gv~l~~~~ 153 (380)
+...+++++..++++.+++++|++.+..+ .++.|++++++++++++|++++.+++|++++++|++++...
T Consensus 34 ~l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~ 104 (137)
T 2i68_A 34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLL 104 (137)
T ss_dssp CHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 45566788899999999999999999888 89999999999999999999999999999999999987543
No 4
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=98.10 E-value=1.4e-05 Score=61.54 Aligned_cols=63 Identities=16% Similarity=0.082 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHhhcchhHHHHh-hhhhhHHHHHHHHHhcCCCCcchhhhHHHHHHHHHHHHHHH
Q 016904 238 ALALNFSIFLVIGRTGAVTIRVA-GVLKDWILIALSTVIFPESTITGLNIIGYAIALCGVVMYNY 301 (380)
Q Consensus 238 ~~~~~~~~~~~i~~~~a~~~s~~-~~l~~v~~~~~~~l~~~~~~~~~~~~~G~~lii~g~~~~~~ 301 (380)
....++++..++++.+...+..+ ..+.|+.+.++++++| +|++++.+++|.++|+.|++..+.
T Consensus 40 ~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~-~E~~s~~~~~Gi~lIi~Gv~~l~~ 103 (110)
T 3b5d_A 40 YCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFF-GQRLDLPAIIGMMLICAGVLIINL 103 (110)
T ss_pred HHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHh-CCCCCHHHHHHHHHHHHHHHHHhc
Confidence 33344556678999999988777 8999999999999999 777999999999999999998754
No 5
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=49.81 E-value=80 Score=29.16 Aligned_cols=22 Identities=9% Similarity=0.082 Sum_probs=16.4
Q ss_pred hhhHHHHHHHHHHHHHHHhhhh
Q 016904 284 LNIIGYAIALCGVVMYNYIKVK 305 (380)
Q Consensus 284 ~~~~G~~lii~g~~~~~~~~~~ 305 (380)
..+.|..+++.|+.+|.+.+++
T Consensus 409 ~~~~~~~~~~~g~~~y~~~~~~ 430 (445)
T 3l1l_A 409 EVMWSFVTLMVITAMYALNYNR 430 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHHHHHHhhh
Confidence 4556888889999888876544
No 6
>3rko_J NADH-quinone oxidoreductase subunit J; complex I, proton pump, membrane protein, Na ubiquinone, cytoplasmic membrane; HET: LFA CA7; 3.00A {Escherichia coli}
Probab=20.10 E-value=3.5e+02 Score=21.91 Aligned_cols=24 Identities=8% Similarity=0.221 Sum_probs=17.9
Q ss_pred HHHHHHhcCCCCcchhhhHHHHHHH
Q 016904 269 IALSTVIFPESTITGLNIIGYAIAL 293 (380)
Q Consensus 269 ~~~~~l~~~~~~~~~~~~~G~~lii 293 (380)
--+|..+| .+-+-+.+++|..+..
T Consensus 127 ~~iG~~Lf-t~Y~lpFElaSvlLLv 150 (184)
T 3rko_J 127 KAVGITLF-GPYVLAVELASMLLLA 150 (184)
T ss_dssp HHHHHHHT-TTSHHHHHHHHHHHHH
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 45788888 5558888888888754
No 7
>2jo1_A Phospholemman; FXYD1, Na,K-ATPase, micelle, hydrolase regulator; NMR {Homo sapiens}
Probab=19.04 E-value=1.9e+02 Score=19.40 Aligned_cols=18 Identities=11% Similarity=0.240 Sum_probs=10.4
Q ss_pred hHHHHHHHHHHHHHHHhh
Q 016904 286 IIGYAIALCGVVMYNYIK 303 (380)
Q Consensus 286 ~~G~~lii~g~~~~~~~~ 303 (380)
++++++.++|+++....+
T Consensus 22 ifA~vLfi~GI~iilS~K 39 (72)
T 2jo1_A 22 VIAGILFILGILIVLSRR 39 (72)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCc
Confidence 345556667776655444
No 8
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=15.54 E-value=5.9e+02 Score=23.59 Aligned_cols=15 Identities=7% Similarity=0.113 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHHH
Q 016904 287 IGYAIALCGVVMYNY 301 (380)
Q Consensus 287 ~G~~lii~g~~~~~~ 301 (380)
.+..+++.++.++.+
T Consensus 450 ~~~~~~~~~i~~~~~ 464 (511)
T 4djk_A 450 VVSFLVVLALPFILY 464 (511)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444444443
No 9
>3b9w_A Ammonium transporter family; membrane protein, ammonia transport, rhesus protein, transpo protein; HET: BOG; 1.30A {Nitrosomonas europaea} PDB: 3bhs_A 3b9y_A* 3b9z_A*
Probab=13.51 E-value=7.6e+02 Score=22.76 Aligned_cols=192 Identities=13% Similarity=-0.032 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhhccCCCcccHHhhhHHhhhHHHHHHHHHHHHhhhhhcccHhHHHHHHHHHHHHHHHHHHHhc----
Q 016904 53 GFSGVVAFFLVRVFKVVSPVKMTFEIYATCVVPISAFFASSLWFGNTAYLHISVAFIQMLKALMPVATFFMAVLCG---- 128 (380)
Q Consensus 53 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~il~~~~pi~v~ll~~~~l---- 128 (380)
..+....+.+-+..++...++.+... .....++.++.-.+-..+|-++..-......++....-.-...+.+++.
T Consensus 151 ~~aLa~a~~LG~R~~~~~~~~~~~hn-~~~~~lGt~lLW~GWfGFN~Gl~~~~~~~~a~~NT~lAaaag~l~~~~~~~~~ 229 (407)
T 3b9w_A 151 YFGLGVSIALTTAAQRAQPIESDATS-DRFSMLGSMVLWLFWPSFATAIVPFEQMPQTIVNTLLALCGATLATYFLSALF 229 (407)
T ss_dssp HHHHHHHHHHCCHHHHTSCCCCCHHH-HHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCccccCCCCcCCCCC-HHHHHHHHHHHHHHHHhhhhhhccchhhHHHHHHhHHHHHHHHHHHHHHHHHH
Q ss_pred cccccHhHHHHHHHHHhhhheeeeccceehHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHHHHH
Q 016904 129 TDKARLDVFLNMVLVSVGVVISSYGEIHFNIVGTLYQVTGIVAEALRLVLTQVLLQKKGLTLNPITSLYYIAPCSFVFLF 208 (380)
Q Consensus 129 ~ek~~~~~~~~v~l~~~Gv~l~~~~~~~~~~~G~~l~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~ 208 (380)
+++-.-.....-.....+|++-...+.-..+..++.++++.+..-+...+.++.++++-.-.|+..........+.+-.+
T Consensus 230 ~~gK~~~~~~~nG~LAGLVAITa~~~~v~p~~A~iIG~iaG~i~~~~~~~l~~~l~~~l~iDD~l~a~~vHgv~Gi~G~l 309 (407)
T 3b9w_A 230 HKGKASIVDMANAALAGGVAIGSVCNIVGPVGAFVIGLLGGAISVVGFVFIQPMLESKAKTIDTCGVHNLHGLPGLLGGF 309 (407)
T ss_dssp TTTCCCHHHHHHHTTHHHHHHTTTTTTSCHHHHHHHHHHHHHHHHHHHHTHHHHHHHHSCCCCTTCHHHHTTHHHHHHHH
T ss_pred hCCCCCHHHHHHhhhhhhheeccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCeecchHHHHHHHH
Q ss_pred HHHHhhcCCccccccchhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 016904 209 VPWYLLEKPMMEVSQIQFNFWIFFSNALCALALNFSIFLVIGR 251 (380)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 251 (380)
...++...... ..+..++.....++...+.....+++
T Consensus 310 ~~glfa~~~~~------~Ql~g~~~~~~~s~v~~~i~~~il~~ 346 (407)
T 3b9w_A 310 SAILIVPGIAV------AQLTGIGITLALALIGGVIAGALIKL 346 (407)
T ss_dssp HHHHHSTTCHH------HHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHccCCcH------HHHHHHHHHHHHHHHHHHHHHHHHhC
No 10
>2zxe_G FXYD10, phospholemman-like protein; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_G*
Probab=13.36 E-value=96 Score=21.02 Aligned_cols=49 Identities=8% Similarity=0.096 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHhhhhhhhhccCCCCCCCCcccccchhhhcccCC
Q 016904 286 IIGYAIALCGVVMYNYIKVKDVRASSQLPAESIPDRIAKDWKLEKKSSD 334 (380)
Q Consensus 286 ~~G~~lii~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (380)
+.+.++.++|+++....|-+-+.+++.+....+.+.+.++.-.+....+
T Consensus 25 ifA~vLfi~GI~iilS~kcrCk~~qk~~~~p~d~~a~~~~litpg~a~~ 73 (74)
T 2zxe_G 25 IVAAVLCVIGIIILLAGKCRCKFNQNKRTRSNSGTATAQHLLQPGEATE 73 (74)
T ss_dssp HHHHHHHHHHHHHHTTTC-------------------------------
T ss_pred hhHHHHHHHHHHHHHcCccccCCCCCCCCCCCccccccccccccCccCC
Done!