Query 016904
Match_columns 380
No_of_seqs 214 out of 1875
Neff 9.3
Searched_HMMs 13730
Date Mon Mar 25 05:43:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016904.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/016904hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2e74g1 f.23.26.1 (G:9-35) Pet 18.3 55 0.004 15.7 2.7 16 160-175 3-18 (27)
2 d1u7ga_ f.44.1.1 (A:) Ammonium 16.4 2.9E+02 0.021 23.1 20.8 85 119-210 241-327 (383)
3 d1pv7a_ f.38.1.2 (A:) Lactose 12.9 3E+02 0.022 21.5 14.0 21 129-149 283-303 (417)
4 d1pw4a_ f.38.1.1 (A:) Glycerol 9.1 4.3E+02 0.031 21.0 22.6 10 105-114 283-292 (447)
5 d1oedc_ f.36.1.1 (C:) Acetylch 8.4 2.3E+02 0.016 21.7 5.3 16 287-302 75-90 (260)
6 d1oeda_ f.36.1.1 (A:) Acetylch 5.3 5.5E+02 0.04 18.8 8.6 14 287-300 75-88 (227)
7 d1iwga7 f.35.1.1 (A:7-37,A:331 5.0 5.7E+02 0.041 18.5 5.8 42 257-299 68-109 (199)
8 d1fftb2 f.17.2.1 (B:27-117) Cy 4.9 1E+02 0.0073 20.0 0.8 18 290-307 29-46 (91)
9 d2r6gf1 e.70.1.1 (F:13-260) Ma 4.8 6.7E+02 0.049 19.2 7.1 29 116-144 34-62 (248)
10 d3dtua1 f.24.1.1 (A:14-551) Ba 3.4 8.7E+02 0.063 21.0 6.3 46 159-204 178-223 (538)
No 1
>d2e74g1 f.23.26.1 (G:9-35) PetG subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=18.34 E-value=55 Score=15.69 Aligned_cols=16 Identities=19% Similarity=0.227 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHH
Q 016904 160 VGTLYQVTGIVAEALR 175 (380)
Q Consensus 160 ~G~~l~l~s~~~~a~~ 175 (380)
+|.+..-++.++||.|
T Consensus 3 lgli~~tl~glf~aay 18 (27)
T d2e74g1 3 LGLVFATLGGLFYAAY 18 (27)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred eeehHHHHHHHHHHHH
Confidence 5777778888888875
No 2
>d1u7ga_ f.44.1.1 (A:) Ammonium transporter AmtB {Escherichia coli [TaxId: 562]}
Probab=16.36 E-value=2.9e+02 Score=23.09 Aligned_cols=85 Identities=11% Similarity=-0.079 Sum_probs=36.9
Q ss_pred HHHHHHHHhccccccHhHHHHHHHHHhhhheeeec-cceehHHHHHHHHHHH-HHHHHHHHHHHHHhhhCCCCCCHHHHH
Q 016904 119 ATFFMAVLCGTDKARLDVFLNMVLVSVGVVISSYG-EIHFNIVGTLYQVTGI-VAEALRLVLTQVLLQKKGLTLNPITSL 196 (380)
Q Consensus 119 ~v~ll~~~~l~ek~~~~~~~~v~l~~~Gv~l~~~~-~~~~~~~G~~l~l~s~-~~~a~~~v~~~~~~~~~~~~~~~~~~~ 196 (380)
++.++...+.++|.+......-. ++|++-+... +.-..+...+.+.++. +++-.+..+.+|+ |- .|+....
T Consensus 241 ~~~~~~~~~~~~k~~~~~~~nG~--LaGLVaita~~~~v~p~~A~~iG~i~g~i~~~~~~~l~~~~-~i----DD~~~~~ 313 (383)
T d1u7ga_ 241 LGWIFGEWALRGLPSLLGACSGA--IAGLVGVTPACGYIGVGGALIIGVVAGLAGLWGVTMLKRLL-RV----DDPCDVF 313 (383)
T ss_dssp HHHHHHHHHHHSSCCHHHHHHHH--HHHHHHHTTTTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHH-CS----CCGGGHH
T ss_pred HHHHHHHHHhcCCCCHHHHHHHh--hhhhhhcccCccccchhhHHHHHhhccHHHHHHHHHHHhhc-cc----ccccceE
Confidence 33333334556677776644322 3354444332 2222333455554443 3333333333333 32 2555555
Q ss_pred HHHHHHHHHHHHHH
Q 016904 197 YYIAPCSFVFLFVP 210 (380)
Q Consensus 197 ~~~~~~~~i~l~~~ 210 (380)
......+..-.+..
T Consensus 314 ~vHg~~Gi~G~l~~ 327 (383)
T d1u7ga_ 314 GVHGVCGIVGCIMT 327 (383)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred eehhhhHHHHHHHH
Confidence 54444444333333
No 3
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=12.91 E-value=3e+02 Score=21.52 Aligned_cols=21 Identities=14% Similarity=-0.010 Sum_probs=11.6
Q ss_pred cccccHhHHHHHHHHHhhhhe
Q 016904 129 TDKARLDVFLNMVLVSVGVVI 149 (380)
Q Consensus 129 ~ek~~~~~~~~v~l~~~Gv~l 149 (380)
.+|..+++.+.+...+.++.+
T Consensus 283 ~~r~~~~~~~~~~~~~~~~~~ 303 (417)
T d1pv7a_ 283 INRIGGKNALLLAGTIMSVRI 303 (417)
T ss_dssp HHHHCHHHHHHHHHHHHHHHH
T ss_pred hcccccccchhhhHHHHHHhh
Confidence 356666666655555555443
No 4
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=9.12 E-value=4.3e+02 Score=21.04 Aligned_cols=10 Identities=0% Similarity=-0.293 Sum_probs=3.9
Q ss_pred cHhHHHHHHH
Q 016904 105 SVAFIQMLKA 114 (380)
Q Consensus 105 ~~~~~~il~~ 114 (380)
+.........
T Consensus 283 ~~~~~~~~~~ 292 (447)
T d1pw4a_ 283 ALDKSSWAYF 292 (447)
T ss_dssp CHHHHHHHHH
T ss_pred ccchhhhhhh
Confidence 3333433333
No 5
>d1oedc_ f.36.1.1 (C:) Acetylcholine receptor protein, delta chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
Probab=8.37 E-value=2.3e+02 Score=21.68 Aligned_cols=16 Identities=25% Similarity=0.436 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHh
Q 016904 287 IGYAIALCGVVMYNYI 302 (380)
Q Consensus 287 ~G~~lii~g~~~~~~~ 302 (380)
+++.++...++++...
T Consensus 75 v~~s~~~t~~Vl~~~~ 90 (260)
T d1oedc_ 75 VTGVIVNCGIVLNFHF 90 (260)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhheeeee
Confidence 5555555555554443
No 6
>d1oeda_ f.36.1.1 (A:) Acetylcholine receptor protein, alpha chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
Probab=5.35 E-value=5.5e+02 Score=18.79 Aligned_cols=14 Identities=21% Similarity=0.202 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHHH
Q 016904 287 IGYAIALCGVVMYN 300 (380)
Q Consensus 287 ~G~~lii~g~~~~~ 300 (380)
+++.++...++.+.
T Consensus 75 v~~sli~tiiV~~l 88 (227)
T d1oeda_ 75 VISSIIITVVVINT 88 (227)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhe
Confidence 33444444444433
No 7
>d1iwga7 f.35.1.1 (A:7-37,A:331-498) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=4.99 E-value=5.7e+02 Score=18.50 Aligned_cols=42 Identities=19% Similarity=0.111 Sum_probs=25.6
Q ss_pred HHHhhhhhhHHHHHHHHHhcCCCCcchhhhHHHHHHHHHHHHH
Q 016904 257 IRVAGVLKDWILIALSTVIFPESTITGLNIIGYAIALCGVVMY 299 (380)
Q Consensus 257 ~s~~~~l~~v~~~~~~~l~~~~~~~~~~~~~G~~lii~g~~~~ 299 (380)
.......-.+...+....++ +.+++.....+..+++....-+
T Consensus 68 i~~~~i~~~i~~~~~~m~~~-g~~l~~~s~~~~~i~igi~vd~ 109 (199)
T d1iwga7 68 IPTIAVPVVLLGTFAVLAAF-GFSINTLTMFGMVLAIGLLVDD 109 (199)
T ss_dssp HHHHHHHHHHHHHHHHHHTT-TCCSCHHHHHHHHHHHHHHHHH
T ss_pred eeccccchhhHHHHHHhhcC-CCchHHHHHHHHHHHHHHhccc
Confidence 33334444444455556667 6668888888887776655544
No 8
>d1fftb2 f.17.2.1 (B:27-117) Cytochrome O ubiquinol oxidase, subunit II {Escherichia coli [TaxId: 562]}
Probab=4.88 E-value=1e+02 Score=20.04 Aligned_cols=18 Identities=11% Similarity=-0.119 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHhhhhhh
Q 016904 290 AIALCGVVMYNYIKVKDV 307 (380)
Q Consensus 290 ~lii~g~~~~~~~~~~~~ 307 (380)
.+++.|.++|...|+|++
T Consensus 29 ~v~V~~~~~~~~~ryR~~ 46 (91)
T d1fftb2 29 VIPAILMAVGFAWKYRAS 46 (91)
T ss_dssp TTHHHHHHHTTTTTTTTS
T ss_pred HHHHHHHHHhhheeeecc
Confidence 345566666766666543
No 9
>d2r6gf1 e.70.1.1 (F:13-260) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]}
Probab=4.82 E-value=6.7e+02 Score=19.15 Aligned_cols=29 Identities=7% Similarity=-0.103 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHhccccccHhHHHHHHHHH
Q 016904 116 MPVATFFMAVLCGTDKARLDVFLNMVLVS 144 (380)
Q Consensus 116 ~pi~v~ll~~~~l~ek~~~~~~~~v~l~~ 144 (380)
.-+.+.++.++++.+|.-+.|++-=++++
T Consensus 34 ~~~~~~~~~~vy~s~r~~p~kyi~PG~~~ 62 (248)
T d2r6gf1 34 TLILSSAGLYIFANRKAYAWRYVYPGMAG 62 (248)
T ss_dssp HHHHHHHHHHHHSSSCCTTHHHHHHHHHH
T ss_pred HHHHHHheEEEEEccCccceehhhhHHHH
Confidence 34455566677777777777776544333
No 10
>d3dtua1 f.24.1.1 (A:14-551) Bacterial aa3 type cytochrome c oxidase subunit I {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=3.43 E-value=8.7e+02 Score=20.96 Aligned_cols=46 Identities=11% Similarity=0.184 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHH
Q 016904 159 IVGTLYQVTGIVAEALRLVLTQVLLQKKGLTLNPITSLYYIAPCSF 204 (380)
Q Consensus 159 ~~G~~l~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (380)
..|..+..+|++..++..+.+-..+|+.+.+.....+..+..+++.
T Consensus 178 i~~l~l~gissi~~~iN~i~Ti~~~R~~gm~~~~~Plf~w~~l~t~ 223 (538)
T d3dtua1 178 IFAVHLSGASSILGAINMITTFLNMRAPGMTMHKVPLFAWSIFVTA 223 (538)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCCCTTCCGGGSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCChhhchHHHHHHHHHH
Confidence 3688888899999999888887766765554444444555444443
Done!