BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016906
(380 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3M65|A Chain A, Crystal Structure Of Bacillus Subtilis Lon N-Terminal
Domain
pdb|3M65|B Chain B, Crystal Structure Of Bacillus Subtilis Lon N-Terminal
Domain
Length = 209
Score = 33.1 bits (74), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 53/114 (46%), Gaps = 4/114 (3%)
Query: 86 TLPLFYLDGVVLFPEATLPLRVIKPNFIAAAERALSQVDVPYTIGVVRV-FREPDNGRIT 144
++PL L G++++P L L V + + A E+A+ + + + EP G
Sbjct: 8 SIPLLPLRGLLVYPTMVLHLDVGRDKSVQALEQAMMHDHMIFLATQQDISIDEP--GEDE 65
Query: 145 FATIGTTAEIRQYRRLEDGSLNVVTXXXXXXXXXXXWIDVEGVPCGEIQIIQED 198
T+GT +I+Q +L +G++ V+ + + E +IQ+I ED
Sbjct: 66 IFTVGTYTKIKQMLKLPNGTIRVLV-EGLKRAHIVKYNEHEDYTSVDIQLIHED 118
>pdb|2ANE|A Chain A, Crystal Structure Of N-Terminal Domain Of E.Coli Lon
Protease
pdb|2ANE|B Chain B, Crystal Structure Of N-Terminal Domain Of E.Coli Lon
Protease
pdb|2ANE|C Chain C, Crystal Structure Of N-Terminal Domain Of E.Coli Lon
Protease
pdb|2ANE|D Chain D, Crystal Structure Of N-Terminal Domain Of E.Coli Lon
Protease
pdb|2ANE|E Chain E, Crystal Structure Of N-Terminal Domain Of E.Coli Lon
Protease
pdb|2ANE|F Chain F, Crystal Structure Of N-Terminal Domain Of E.Coli Lon
Protease
pdb|2ANE|G Chain G, Crystal Structure Of N-Terminal Domain Of E.Coli Lon
Protease
pdb|2ANE|H Chain H, Crystal Structure Of N-Terminal Domain Of E.Coli Lon
Protease
Length = 125
Score = 33.1 bits (74), Expect = 0.29, Method: Composition-based stats.
Identities = 23/84 (27%), Positives = 39/84 (46%), Gaps = 1/84 (1%)
Query: 85 LTLPLFYLDGVVLFPEATLPLRVIKPNFIAAAERALSQVDVPYTIGVVRVFREPDNGRIT 144
+ +P+ L VV++P +PL V + I E A+ D + + + G
Sbjct: 16 IEIPVLPLRDVVVYPHMVIPLFVGREKSIRCLEAAMDH-DKKIMLVAQKEASTDEPGVND 74
Query: 145 FATIGTTAEIRQYRRLEDGSLNVV 168
T+GT A I Q +L DG++ V+
Sbjct: 75 LFTVGTVASILQMLKLPDGTVKVL 98
>pdb|3CDX|A Chain A, Crystal Structure Of
SuccinylglutamatedesuccinylaseASPARTOACYLASE FROM
Rhodobacter Sphaeroides
pdb|3CDX|B Chain B, Crystal Structure Of
SuccinylglutamatedesuccinylaseASPARTOACYLASE FROM
Rhodobacter Sphaeroides
pdb|3CDX|C Chain C, Crystal Structure Of
SuccinylglutamatedesuccinylaseASPARTOACYLASE FROM
Rhodobacter Sphaeroides
pdb|3CDX|D Chain D, Crystal Structure Of
SuccinylglutamatedesuccinylaseASPARTOACYLASE FROM
Rhodobacter Sphaeroides
pdb|3CDX|E Chain E, Crystal Structure Of
SuccinylglutamatedesuccinylaseASPARTOACYLASE FROM
Rhodobacter Sphaeroides
pdb|3CDX|F Chain F, Crystal Structure Of
SuccinylglutamatedesuccinylaseASPARTOACYLASE FROM
Rhodobacter Sphaeroides
Length = 354
Score = 33.1 bits (74), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 41/91 (45%), Gaps = 10/91 (10%)
Query: 282 DDKSAFQSDIQSRRPHLNDSDSIGNWKQSENVGLRIGKSSALGRQSHRG--EGSKMCWRN 339
D+ S F S ++ RR ++ +G W + G+RIGK L H G EG+
Sbjct: 194 DEGSTFTSCVE-RRGIVSLGTELGGWGRVNIEGVRIGKRGILNVLKHMGVIEGTP----- 247
Query: 340 ELSQFRRTSRAFLPHWVYRMYDSYCLAQRAA 370
E +Q R A H + R D+Y +A R
Sbjct: 248 ETAQ--RGGAAGTRHMMVREADAYVMAPRTG 276
>pdb|3LJC|A Chain A, Crystal Structure Of Lon N-Terminal Domain
Length = 252
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 38/85 (44%), Gaps = 1/85 (1%)
Query: 85 LTLPLFYLDGVVLFPEATLPLRVIKPNFIAAAERALSQVDVPYTIGVVRVFREPDNGRIT 144
+ +P+ L VV++P +PL V + I E A D + + + G
Sbjct: 16 IEIPVLPLRDVVVYPHXVIPLFVGREKSIRCLEAAXDH-DKKIXLVAQKEASTDEPGVND 74
Query: 145 FATIGTTAEIRQYRRLEDGSLNVVT 169
T+GT A I Q +L DG++ V+
Sbjct: 75 LFTVGTVASILQXLKLPDGTVKVLV 99
>pdb|1VK4|A Chain A, Crystal Structure Of Pfkb Carbohydrate Kinase (tm0415)
From Thermotoga Maritima At 1.91 A Resolution
Length = 298
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 4/52 (7%)
Query: 72 THNRMAFLEGGAILTLPLFYLDGVVLFPEATLPLRVIKPNFIAAAERALSQV 123
T + +AF+EG A+ PL+Y + FPE +P+ K F++A + +V
Sbjct: 111 TESDLAFIEGEAVHINPLWYGE----FPEDLIPVLRRKVXFLSADAQGFVRV 158
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,029,260
Number of Sequences: 62578
Number of extensions: 317079
Number of successful extensions: 462
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 459
Number of HSP's gapped (non-prelim): 5
length of query: 380
length of database: 14,973,337
effective HSP length: 101
effective length of query: 279
effective length of database: 8,652,959
effective search space: 2414175561
effective search space used: 2414175561
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)