Query 016906
Match_columns 380
No_of_seqs 259 out of 1343
Neff 5.5
Searched_HMMs 29240
Date Mon Mar 25 05:45:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016906.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016906hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3m65_A ATP-dependent protease 100.0 1.3E-34 4.3E-39 266.8 15.3 174 83-261 5-193 (209)
2 3ljc_A ATP-dependent protease 100.0 1.8E-33 6.2E-38 266.6 12.3 173 84-261 15-202 (252)
3 1zbo_A Hypothetical protein BP 100.0 3.3E-32 1.1E-36 250.8 16.4 171 85-261 2-191 (210)
4 2ane_A ATP-dependent protease 99.9 2.9E-26 1E-30 196.8 16.9 112 80-196 11-125 (125)
5 4aqz_A PILQ, type IV pilus bio 19.8 1.9E+02 0.0067 24.5 5.9 53 142-196 85-137 (138)
6 1sn9_A BBAT, tetrameric beta-B 18.7 49 0.0017 20.1 1.3 17 361-377 5-21 (26)
7 3kmh_A D-lyxose isomerase; cup 13.6 1.1E+02 0.0036 28.8 2.9 16 95-110 111-126 (246)
8 2l05_A Serine/threonine-protei 12.5 93 0.0032 25.1 1.9 18 16-33 76-93 (95)
9 1wxm_A A-RAF proto-oncogene se 12.2 79 0.0027 25.0 1.4 19 16-34 66-84 (86)
10 1m4u_A Noggin; BMP antagonist, 11.3 39 0.0013 30.9 -0.8 9 348-356 139-147 (206)
No 1
>3m65_A ATP-dependent protease LA 1; coiled-coil, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; 2.60A {Bacillus subtilis}
Probab=100.00 E-value=1.3e-34 Score=266.78 Aligned_cols=174 Identities=20% Similarity=0.266 Sum_probs=156.4
Q ss_pred ceeeEEEEeeCCceecCCCceeeEecChhHHHHHHHHHhcCCCCcEEEEEeeecCCC---CCcCcccCeeEEEEEEEEEE
Q 016906 83 AILTLPLFYLDGVVLFPEATLPLRVIKPNFIAAAERALSQVDVPYTIGVVRVFREPD---NGRITFATIGTTAEIRQYRR 159 (380)
Q Consensus 83 ~~~~LPllpLrg~VLFPG~~lpL~V~rprsi~aVe~Am~~dd~~~~IgLv~q~kd~~---p~~~dly~IGTlAeI~qv~r 159 (380)
.+.+||+|||+|+|+|||+++||+|++++|++||++||+++ +.||+|+| ++++ |+.+++|.|||+|+|.++.+
T Consensus 5 ~~~~lPl~PLr~~vlfPg~~~pL~V~~~r~~~~v~~a~~~~---~~i~lv~q-~~~~~~~p~~~~l~~vGt~a~I~~~~~ 80 (209)
T 3m65_A 5 LKRSIPLLPLRGLLVYPTMVLHLDVGRDKSVQALEQAMMHD---HMIFLATQ-QDISIDEPGEDEIFTVGTYTKIKQMLK 80 (209)
T ss_dssp EEEEEEEEEESSCCCCTTCEEEEEECSHHHHHHHHHHTTTT---SEEEEEEB-SSTTCSSCCGGGBCSEEEEEEEEEEEE
T ss_pred CCCceEEEEeCCccccCCccEEEEECCHHHHHHHHHHHhcC---CEEEEEEe-cCCCcCCCCcchhhheeEEEEEEEEEE
Confidence 45689999999999999999999999999999999999986 78999998 7654 55689999999999999999
Q ss_pred CCCCcEEEEEEEeEEEEEeeeeeccCCcceEEEEEecCC--------cccccHHHHHHHHHhhcCCCcc--ccccccCC-
Q 016906 160 LEDGSLNVVTRGQQRFRLRRRWIDVEGVPCGEIQIIQED--------LPLRTPRDVFETLGCVSNLSQS--LSHTLPSN- 228 (380)
Q Consensus 160 lpdG~lrVlveG~qRfrI~~~~~~~dg~l~AeVeil~E~--------al~r~l~e~f~e~a~l~~~~~~--~~~~~~~~- 228 (380)
+|||+++|+++|.+||+|.+ +.+.+||+.|+|+.+++. ++.+.+++.|++|+++++..+. ...+...+
T Consensus 81 l~dG~~~v~v~G~~R~ri~~-~~~~~~~~~a~v~~~~~~~~~~~e~~al~~~l~~~~~~~~~~~~~~~~e~~~~~~~~~d 159 (209)
T 3m65_A 81 LPNGTIRVLVEGLKRAHIVK-YNEHEDYTSVDIQLIHEDDSKDTEDEALMRTLLDHFDQYIKISKKISAETYAAVTDIEE 159 (209)
T ss_dssp CTTSCEEEEEEEEEEEEEEE-EEECSSSEEEEEEECCCC--CCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCC
T ss_pred CCCCeEEEEEEEEEEEEEEE-EEcCCCcEEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHccCC
Confidence 99999999999999999998 888999999999999764 3678899999999999887776 33444444
Q ss_pred -ccchhhhccCCCCCCccchhhcccCCHHhhhhh
Q 016906 229 -SSSRGYGIRDNDSDATSEESFESELSPTERRIH 261 (380)
Q Consensus 229 -~~l~D~ia~~l~~~~~~kQ~iLe~~dv~eRl~~ 261 (380)
+.++|.+|++++++.++||++||+.|+.+|+..
T Consensus 160 p~~lad~ia~~l~l~~~ekQ~lLe~~d~~~Rl~~ 193 (209)
T 3m65_A 160 PGRMADIVASHLPLKLKDKQDILETADVKDRLNK 193 (209)
T ss_dssp HHHHHHHHHHHSCCCHHHHHHHHTCCSHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHcCCCHHHHHHH
Confidence 789999999999999999999999999999974
No 2
>3ljc_A ATP-dependent protease LA; LON N-domain, allosteric enzyme, ATP-binding, DNA-binding, H nucleotide-binding, serine protease, stress respo; 2.60A {Escherichia coli}
Probab=100.00 E-value=1.8e-33 Score=266.59 Aligned_cols=173 Identities=22% Similarity=0.237 Sum_probs=155.4
Q ss_pred eeeEEEEeeCCceecCCCceeeEecChhHHHHHHHHHhcCCCCcEEEEEeeecCCC---CCcCcccCeeEEEEEEEEEEC
Q 016906 84 ILTLPLFYLDGVVLFPEATLPLRVIKPNFIAAAERALSQVDVPYTIGVVRVFREPD---NGRITFATIGTTAEIRQYRRL 160 (380)
Q Consensus 84 ~~~LPllpLrg~VLFPG~~lpL~V~rprsi~aVe~Am~~dd~~~~IgLv~q~kd~~---p~~~dly~IGTlAeI~qv~rl 160 (380)
+.+||+|||+|+|||||+++||+|++++|++||++|++++ +.||+|+| ++++ |+.+++|.|||+|+|.++.++
T Consensus 15 ~~~lPl~PLr~~VlfPg~~~pL~I~~~r~~~~v~~a~~~~---~~~~lv~q-~~~~~~~p~~~~l~~vGt~a~I~~~~~l 90 (252)
T 3ljc_A 15 RIEIPVLPLRDVVVYPHMVIPLFVGREKSIRCLEAAMDHD---KKIMLVAQ-KEASTDEPGVNDLFTVGTVASILQMLKL 90 (252)
T ss_dssp CCCCEEEEESSCCCCBTCEEEEEECCTTTHHHHHHHHTTT---TEEEEEEB-CSSCCSSCCSSSBCSEEEEEEECCCBCC
T ss_pred CCceeEEEeCCccccCCcceEEEECCHHHHHHHHHHHhcC---CEEEEEEe-cCCCcCCCCccchhheeEEEEEEEEEEC
Confidence 4579999999999999999999999999999999999987 78999998 6654 567899999999999999999
Q ss_pred CCCcEEEEEEEeEEEEEeeeeeccCCcceEEEEEecCC--------cccccHHHHHHHHHhhcCCCcc--ccccccCC--
Q 016906 161 EDGSLNVVTRGQQRFRLRRRWIDVEGVPCGEIQIIQED--------LPLRTPRDVFETLGCVSNLSQS--LSHTLPSN-- 228 (380)
Q Consensus 161 pdG~lrVlveG~qRfrI~~~~~~~dg~l~AeVeil~E~--------al~r~l~e~f~e~a~l~~~~~~--~~~~~~~~-- 228 (380)
|||+++|+++|.+||+|.+ +.+.+||+.|+|+.+++. ++.+.+++.|.+|+.+++..+. ...+..++
T Consensus 91 pdG~~~v~v~G~~R~rI~~-~~~~~~~~~a~ve~l~d~~~~~~e~~al~~~l~~~~~~~~~l~~~~~~e~~~~~~~~~dp 169 (252)
T 3ljc_A 91 PDGTVKVLVEGLQRARISA-LSDNGEHFSAKAEYLESPTIDEREQEVLVRTAISQFEGYIKLNKKIPPEVLTSLNSIDDP 169 (252)
T ss_dssp TTSCEEEEEEEEEEEECSE-EEEETTEEEEECCCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHCSSCHHHHHHTTSCCCH
T ss_pred CCCeEEEEEEEEEEEEEEE-EEcCCCcEEEEEEeecCCCCCChHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHccCCH
Confidence 9999999999999999998 888999999999999764 3678899999999999998877 33444444
Q ss_pred ccchhhhccCCCCCCccchhhcccCCHHhhhhh
Q 016906 229 SSSRGYGIRDNDSDATSEESFESELSPTERRIH 261 (380)
Q Consensus 229 ~~l~D~ia~~l~~~~~~kQ~iLe~~dv~eRl~~ 261 (380)
+.|+|.+|++++++.++||++||+.|+.+|+..
T Consensus 170 ~~Lad~ia~~l~l~~~eKQ~LLe~~d~~~Rl~~ 202 (252)
T 3ljc_A 170 ARLADTIAAHMPLKLADKQSVLEMSDVNERLEY 202 (252)
T ss_dssp HHHHHHHHHTSCCCHHHHHHHHHCCCHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHhcCCHHHHHHH
Confidence 779999999999999999999999999999974
No 3
>1zbo_A Hypothetical protein BPP1347; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.60A {Bordetella parapertussis} SCOP: b.122.1.10
Probab=99.98 E-value=3.3e-32 Score=250.83 Aligned_cols=171 Identities=20% Similarity=0.251 Sum_probs=146.4
Q ss_pred eeEEEEeeCCceecCCCceeeEecChhHHHHHHHHHhcCCCCcEEEEEeeecCCC----C-CcCcccCeeEEEEEEEEEE
Q 016906 85 LTLPLFYLDGVVLFPEATLPLRVIKPNFIAAAERALSQVDVPYTIGVVRVFREPD----N-GRITFATIGTTAEIRQYRR 159 (380)
Q Consensus 85 ~~LPllpLrg~VLFPG~~lpL~V~rprsi~aVe~Am~~dd~~~~IgLv~q~kd~~----p-~~~dly~IGTlAeI~qv~r 159 (380)
.+||+||| |+|||||+++||+|++++|++||++||+++ +.||+|+| ++.. + ..+++|.|||+|+|.++.+
T Consensus 2 ~~lPl~PL-~~vlfPg~~~pL~V~~~r~~~~v~~a~~~~---~~~glv~~-~~~~~~~~~~~~~dl~~vGt~a~I~~~~~ 76 (210)
T 1zbo_A 2 AEIPLFPL-SNALFPAGVLRLRVFEIRYLDMVRRCIADG---SEFGVVVL-EQGTEVRRPDGREVLARAGTMARIDHWEA 76 (210)
T ss_dssp CEEEEEEE-SSCCCTTBEEEEEECSTTTHHHHHHHHHTT---CCEEEEEE-SSSCSSCCSSCCCCEEEEEEEEEEEEEEC
T ss_pred cEeeEEec-CeeecCCCceeeEECCHHHHHHHHHHHhcC---CcEEEEEe-CCCcccCcccccCchhceEEEEEEEEEEe
Confidence 46999999 999999999999999999999999999986 78999998 6433 2 2478999999999999999
Q ss_pred CCCCcEEEEEEEeEEEEEeeeeeccCCcceEEEEEecCC----------cccccHHHHHHHHHhhcCCC--ccccccccC
Q 016906 160 LEDGSLNVVTRGQQRFRLRRRWIDVEGVPCGEIQIIQED----------LPLRTPRDVFETLGCVSNLS--QSLSHTLPS 227 (380)
Q Consensus 160 lpdG~lrVlveG~qRfrI~~~~~~~dg~l~AeVeil~E~----------al~r~l~e~f~e~a~l~~~~--~~~~~~~~~ 227 (380)
+|||+++|+++|.+||+|.+.+.+.+||+.|+|+.+++. ++.+.+++.|.+|++++... ..+..+...
T Consensus 77 lpdG~~~v~v~G~~R~rI~~~~~~~~~y~~a~ve~l~~~~~~~~~~e~~al~~~l~~~~~~~~~~~~~~~~~~l~~~~~~ 156 (210)
T 1zbo_A 77 PMPALLELACTGTGRFRLHACTQGKYGLWTGQAEPVPDDAPLEVPPELARSASALGRLIARLQREGVPPHIMPMAAPFRL 156 (210)
T ss_dssp SSTTCEEEEEEEEEEEEEEEEEECGGGCEEEEEEEECCCCCCCCCGGGHHHHHHHHHHHHHHHHTTCCTTTCSBCSCCCT
T ss_pred CCCceEEEEEEEEEEEEEEEEeecCCCcEEEEEEEcCCCCCCCCcHHHHHHHHHHHHHHHHHHHhccccccccCCCcCCC
Confidence 999999999999999999654788999999999999763 25788999999999987110 112223333
Q ss_pred C--ccchhhhccCCCCCCccchhhcccCCHHhhhhh
Q 016906 228 N--SSSRGYGIRDNDSDATSEESFESELSPTERRIH 261 (380)
Q Consensus 228 ~--~~l~D~ia~~l~~~~~~kQ~iLe~~dv~eRl~~ 261 (380)
+ +.|+|.+|++++++.++||++||+ |+.+|+..
T Consensus 157 ~dp~~lad~ia~~l~l~~~ekQ~lLe~-d~~~Rl~~ 191 (210)
T 1zbo_A 157 DDCGWVADRWAEMLSLPPADKARLLLL-PPLDRLRE 191 (210)
T ss_dssp TCHHHHHHHHHHHSCCCHHHHHHHHHS-CHHHHHHH
T ss_pred CCHHHHHHHHHHhCCCCHHHHHHHHhC-CHHHHHHH
Confidence 3 789999999999999999999999 99999974
No 4
>2ane_A ATP-dependent protease LA; LONN119, LON protease, hydrolase; 2.03A {Escherichia coli} SCOP: b.122.1.10
Probab=99.94 E-value=2.9e-26 Score=196.82 Aligned_cols=112 Identities=28% Similarity=0.391 Sum_probs=99.8
Q ss_pred cCCceeeEEEEeeCCceecCCCceeeEecChhHHHHHHHHHhcCCCCcEEEEEeeecCCC---CCcCcccCeeEEEEEEE
Q 016906 80 EGGAILTLPLFYLDGVVLFPEATLPLRVIKPNFIAAAERALSQVDVPYTIGVVRVFREPD---NGRITFATIGTTAEIRQ 156 (380)
Q Consensus 80 e~g~~~~LPllpLrg~VLFPG~~lpL~V~rprsi~aVe~Am~~dd~~~~IgLv~q~kd~~---p~~~dly~IGTlAeI~q 156 (380)
+.+.+.+||+|||+|+|||||+++||+|++++|++||++|++++ +.||+++| ++++ ++.+++|.|||+|+|.+
T Consensus 11 ~~~~p~~lPl~PLr~~vlfPg~~~pL~V~~~r~i~~v~~a~~~~---~~i~lv~~-k~~~~~~p~~~dl~~vGt~a~I~~ 86 (125)
T 2ane_A 11 ERSERIEIPVLPLRDVVVYPHMVIPLFVGREKSIRCLEAAMDHD---KKIMLVAQ-KEASTDEPGVNDLFTVGTVASILQ 86 (125)
T ss_dssp ----CEEEEEEEESSCCCCTTCEEEEEECCHHHHHHHHHHHTTT---SEEEEEEB-CTTCCSSCCGGGBCSEEEEEEEEE
T ss_pred ccCCCCeEEEEEeCCeeeCCCccEEEEECCHHHHHHHHHHHhcC---CEEEEEEe-cCCCccCCCccchhccEEEEEEEE
Confidence 45667789999999999999999999999999999999999876 78999998 6543 46689999999999999
Q ss_pred EEECCCCcEEEEEEEeEEEEEeeeeeccCCcceEEEEEec
Q 016906 157 YRRLEDGSLNVVTRGQQRFRLRRRWIDVEGVPCGEIQIIQ 196 (380)
Q Consensus 157 v~rlpdG~lrVlveG~qRfrI~~~~~~~dg~l~AeVeil~ 196 (380)
+.+++||+++|+++|.+||+|.+ +.+.+||+.|+|+.++
T Consensus 87 ~~~lpdG~~~ilv~G~~R~rI~~-~~~~~~~~~a~V~~l~ 125 (125)
T 2ane_A 87 MLKLPDGTVKVLVEGLQRARISA-LSDNGEHFSAKAEYLE 125 (125)
T ss_dssp EEECTTSCEEEEEEEEEEEEEEE-EEECSSSEEEEEEEC-
T ss_pred EeeCCCCcEEEEEEEEEEEEEEE-EEcCCCcEEEEEEECC
Confidence 99999999999999999999998 8899999999999864
No 5
>4aqz_A PILQ, type IV pilus biogenesis and competence protein P; transport protein, secretin, type IV PILI, type II secretion; NMR {Neisseria meningitidis}
Probab=19.83 E-value=1.9e+02 Score=24.48 Aligned_cols=53 Identities=11% Similarity=0.114 Sum_probs=38.5
Q ss_pred cCcccCeeEEEEEEEEEECCCCcEEEEEEEeEEEEEeeeeeccCCcceEEEEEec
Q 016906 142 RITFATIGTTAEIRQYRRLEDGSLNVVTRGQQRFRLRRRWIDVEGVPCGEIQIIQ 196 (380)
Q Consensus 142 ~~dly~IGTlAeI~qv~rlpdG~lrVlveG~qRfrI~~~~~~~dg~l~AeVeil~ 196 (380)
.-|.-.+||.++-....+..++ .+++++-...+.-.. ..+.+..+..+|++..
T Consensus 85 rlDV~DFaTPV~~I~~~~~g~~-trl~I~~~G~~ey~~-~yQ~d~~~~veV~P~~ 137 (138)
T 4aqz_A 85 SLDVADFKTPVQKVTLKRLNND-TQLIITTAGNWELVN-KSAAPGYFTFQVLPKK 137 (138)
T ss_dssp EECCTTSSSSEEEEEEEECSSS-EEEEEEECSSEEEEE-EEEETTEEEEEEEECC
T ss_pred heeccccCCCceEEEEEEcCCC-EEEEEEeCCceeEEe-eEeeCCEEEEEEEeCC
Confidence 3566788998888777776554 666676666687665 5788888888888764
No 6
>1sn9_A BBAT, tetrameric beta-BETA-alpha mini-protein; protein design, domain swapping, oligomerization, de novo protein; HET: DBZ; 1.20A {Synthetic} SCOP: k.14.1.1 PDB: 1sna_A* 1sne_A* 1xof_B* 1xof_A*
Probab=18.75 E-value=49 Score=20.07 Aligned_cols=17 Identities=29% Similarity=0.219 Sum_probs=14.6
Q ss_pred chhHHHHHHHHHHHHhh
Q 016906 361 DSYCLAQRAAGSLTLLF 377 (380)
Q Consensus 361 d~y~la~raa~~~~~~~ 377 (380)
-||+.|..-|.|.||-.
T Consensus 5 psydfadelakllrqa~ 21 (26)
T 1sn9_A 5 PSYDFADELAKLLRQAX 21 (26)
T ss_dssp TTBCHHHHHHHHHHHHT
T ss_pred CccchHHHHHHHHHHhh
Confidence 48999999999999853
No 7
>3kmh_A D-lyxose isomerase; cupin beta-barrel, structural genomics, montreal-kingston BA structural genomics initiative, BSGI; 1.58A {Escherichia coli O157} PDB: 3mpb_A*
Probab=13.56 E-value=1.1e+02 Score=28.79 Aligned_cols=16 Identities=6% Similarity=0.013 Sum_probs=14.6
Q ss_pred ceecCCCceeeEecCh
Q 016906 95 VVLFPEATLPLRVIKP 110 (380)
Q Consensus 95 ~VLFPG~~lpL~V~rp 110 (380)
++++||++.|++....
T Consensus 111 Li~~~gQ~~P~H~H~~ 126 (246)
T 3kmh_A 111 MHVRDAQVTPMHFHWR 126 (246)
T ss_dssp EEECBTCEEEEEEESS
T ss_pred eeccCCCCCCcccCCC
Confidence 7899999999999885
No 8
>2l05_A Serine/threonine-protein kinase B-RAF; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens}
Probab=12.46 E-value=93 Score=25.08 Aligned_cols=18 Identities=39% Similarity=0.466 Sum_probs=14.7
Q ss_pred HHhhcccccceeEEecCC
Q 016906 16 QIRQLDFEELQVEEVDDF 33 (380)
Q Consensus 16 ~i~~l~~~~l~~~~~~~~ 33 (380)
.|..|.-|||+||..|+-
T Consensus 76 Di~~L~~eEL~Ve~ld~~ 93 (95)
T 2l05_A 76 DISWLTGEELHVEVLENV 93 (95)
T ss_dssp BGGGGTTCEEEEEESCCS
T ss_pred hhhhccCcEEEEEEecCC
Confidence 356789999999999853
No 9
>1wxm_A A-RAF proto-oncogene serine/threonine-protein kinase; RAS-binding domain (RBD), ubiquitin-like fold, A-RAF kinase, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=12.22 E-value=79 Score=25.03 Aligned_cols=19 Identities=42% Similarity=0.340 Sum_probs=15.0
Q ss_pred HHhhcccccceeEEecCCC
Q 016906 16 QIRQLDFEELQVEEVDDFH 34 (380)
Q Consensus 16 ~i~~l~~~~l~~~~~~~~~ 34 (380)
.|..|.-|||+||..|..+
T Consensus 66 Di~~L~~eEL~Ve~ld~~~ 84 (86)
T 1wxm_A 66 AIAPLDGEELIVEVLSGPS 84 (86)
T ss_dssp BSTTCSSCEEEEEECCSCS
T ss_pred hhhhccCcEEEEEEcccCC
Confidence 3557899999999999543
No 10
>1m4u_A Noggin; BMP antagonist, BMP-7, bone morphogenetic protein, C knot, hormone-growth factor complex; HET: NAG; 2.42A {Homo sapiens} SCOP: g.17.1.7
Probab=11.25 E-value=39 Score=30.89 Aligned_cols=9 Identities=33% Similarity=0.800 Sum_probs=7.0
Q ss_pred ccccchhhH
Q 016906 348 SRAFLPHWV 356 (380)
Q Consensus 348 ~~~~wp~w~ 356 (380)
--.|||+|+
T Consensus 139 G~~fwPR~i 147 (206)
T 1m4u_A 139 GSRFWPRYV 147 (206)
T ss_dssp CTTEESSEE
T ss_pred CcccCcccc
Confidence 345999997
Done!