Query 016908
Match_columns 380
No_of_seqs 305 out of 2027
Neff 8.1
Searched_HMMs 46136
Date Fri Mar 29 03:53:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016908.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016908hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4441 Proteins containing BT 100.0 1.6E-49 3.5E-54 407.8 29.6 339 1-359 70-461 (571)
2 PHA02713 hypothetical protein; 100.0 5.9E-43 1.3E-47 360.1 23.9 272 1-293 60-376 (557)
3 PHA02790 Kelch-like protein; P 100.0 8.9E-41 1.9E-45 339.0 27.5 248 1-279 55-327 (480)
4 PHA03098 kelch-like protein; P 100.0 1.2E-38 2.6E-43 328.1 28.8 256 6-280 47-352 (534)
5 KOG4350 Uncharacterized conser 99.8 3.3E-20 7.2E-25 175.1 10.5 175 1-191 78-254 (620)
6 PF07707 BACK: BTB And C-termi 99.8 4.2E-20 9.2E-25 148.4 4.0 102 74-184 1-102 (103)
7 smart00875 BACK BTB And C-term 99.7 3E-17 6.6E-22 130.8 8.3 99 74-182 1-99 (101)
8 KOG2075 Topoisomerase TOP1-int 99.6 8.7E-16 1.9E-20 148.6 11.3 178 2-190 154-340 (521)
9 KOG4682 Uncharacterized conser 99.5 8.5E-14 1.8E-18 132.0 10.5 142 1-149 102-246 (488)
10 KOG4591 Uncharacterized conser 99.1 1.3E-10 2.8E-15 101.1 8.2 113 14-133 111-224 (280)
11 PHA02713 hypothetical protein; 98.8 5.3E-07 1.1E-11 93.6 21.0 98 238-356 272-381 (557)
12 PF00651 BTB: BTB/POZ domain; 98.6 8.7E-08 1.9E-12 77.4 6.8 58 6-66 51-109 (111)
13 KOG4441 Proteins containing BT 98.6 1.3E-07 2.9E-12 98.1 9.4 107 229-358 381-507 (571)
14 smart00225 BTB Broad-Complex, 98.4 3.9E-07 8.4E-12 69.7 5.4 54 5-61 37-90 (90)
15 PHA02790 Kelch-like protein; P 98.3 3.4E-06 7.3E-11 86.2 9.7 48 229-280 319-372 (480)
16 PHA03098 kelch-like protein; P 98.3 9.1E-06 2E-10 84.1 12.5 47 229-279 343-398 (534)
17 KOG0783 Uncharacterized conser 97.9 2.5E-05 5.4E-10 81.0 7.1 97 9-110 751-852 (1267)
18 TIGR03547 muta_rot_YjhT mutatr 97.5 0.00043 9.3E-09 67.5 9.0 38 238-279 168-209 (346)
19 PLN02153 epithiospecifier prot 97.4 0.00044 9.6E-09 67.4 7.9 48 229-280 86-147 (341)
20 smart00612 Kelch Kelch domain. 97.4 0.00024 5.3E-09 47.5 3.9 32 236-267 13-47 (47)
21 TIGR03548 mutarot_permut cycli 97.3 0.001 2.2E-08 64.3 8.3 48 229-280 124-181 (323)
22 PRK14131 N-acetylneuraminic ac 97.2 0.0013 2.7E-08 65.2 8.9 38 238-279 189-230 (376)
23 TIGR03548 mutarot_permut cycli 97.2 0.0011 2.4E-08 64.1 8.1 47 229-279 73-132 (323)
24 TIGR03547 muta_rot_YjhT mutatr 97.0 0.00089 1.9E-08 65.3 5.2 39 238-280 290-331 (346)
25 PRK14131 N-acetylneuraminic ac 96.7 0.0018 3.8E-08 64.1 4.6 38 239-280 313-353 (376)
26 PF11822 DUF3342: Domain of un 96.5 0.0021 4.6E-08 61.0 3.3 60 7-69 45-104 (317)
27 PLN02153 epithiospecifier prot 96.4 0.0057 1.2E-07 59.6 5.8 40 237-280 216-261 (341)
28 PLN02193 nitrile-specifier pro 96.3 0.0064 1.4E-07 62.1 6.1 47 229-279 229-287 (470)
29 KOG4693 Uncharacterized conser 96.2 0.0062 1.4E-07 56.2 4.5 47 229-279 89-148 (392)
30 PF13964 Kelch_6: Kelch motif 96.2 0.0081 1.8E-07 41.1 3.9 29 229-257 12-50 (50)
31 cd03772 MATH_HAUSP Herpesvirus 96.1 0.037 8E-07 46.5 8.6 111 266-379 16-133 (137)
32 cd03774 MATH_SPOP Speckle-type 96.0 0.027 5.8E-07 47.4 7.4 114 265-380 21-138 (139)
33 PLN02193 nitrile-specifier pro 95.7 0.016 3.5E-07 59.1 5.7 48 229-280 329-387 (470)
34 PF13854 Kelch_5: Kelch motif 95.5 0.014 2.9E-07 38.6 2.8 24 253-280 1-24 (42)
35 PF13964 Kelch_6: Kelch motif 95.3 0.022 4.7E-07 38.9 3.5 21 256-280 1-21 (50)
36 PF13415 Kelch_3: Galactose ox 95.3 0.031 6.6E-07 38.1 4.1 28 237-264 18-48 (49)
37 PF02214 BTB_2: BTB/POZ domain 95.2 0.035 7.7E-07 43.3 4.7 53 5-60 40-94 (94)
38 PF01344 Kelch_1: Kelch motif; 94.9 0.023 5E-07 38.0 2.5 21 256-280 1-21 (47)
39 cd00121 MATH MATH (meprin and 94.6 0.12 2.6E-06 41.5 6.6 108 265-377 14-126 (126)
40 KOG2716 Polymerase delta-inter 94.4 0.1 2.2E-06 47.7 6.2 56 8-66 47-103 (230)
41 cd03775 MATH_Ubp21p Ubiquitin- 94.1 0.29 6.3E-06 40.9 8.1 106 266-376 14-133 (134)
42 PF00917 MATH: MATH domain; I 93.9 0.075 1.6E-06 42.7 4.0 98 272-378 17-119 (119)
43 KOG4693 Uncharacterized conser 93.9 0.079 1.7E-06 49.1 4.4 47 229-279 251-311 (392)
44 PF01344 Kelch_1: Kelch motif; 93.7 0.076 1.7E-06 35.4 3.1 26 229-254 12-44 (47)
45 PF07646 Kelch_2: Kelch motif; 93.6 0.064 1.4E-06 36.5 2.6 20 256-279 1-20 (49)
46 KOG0379 Kelch repeat-containin 93.4 0.089 1.9E-06 53.9 4.4 40 237-280 138-183 (482)
47 cd03773 MATH_TRIM37 Tripartite 93.4 0.27 5.8E-06 40.8 6.6 105 266-376 21-129 (132)
48 KOG1724 SCF ubiquitin ligase, 92.9 0.18 3.9E-06 43.7 4.8 56 8-66 45-125 (162)
49 KOG1665 AFH1-interacting prote 92.6 0.28 6E-06 44.3 5.7 57 3-62 49-105 (302)
50 PF01466 Skp1: Skp1 family, di 92.2 0.12 2.7E-06 39.0 2.7 31 39-70 14-44 (78)
51 KOG0379 Kelch repeat-containin 91.9 0.24 5.2E-06 50.8 5.1 48 229-280 174-234 (482)
52 PLN02772 guanylate kinase 91.8 0.3 6.6E-06 48.3 5.5 46 229-278 35-94 (398)
53 KOG0511 Ankyrin repeat protein 91.7 0.29 6.2E-06 47.5 5.0 106 6-118 331-442 (516)
54 KOG3473 RNA polymerase II tran 90.5 0.43 9.2E-06 37.3 4.0 48 2-52 53-111 (112)
55 KOG4350 Uncharacterized conser 87.8 0.85 1.9E-05 44.7 4.9 113 39-183 148-261 (620)
56 smart00512 Skp1 Found in Skp1 87.8 0.55 1.2E-05 37.4 3.2 43 8-53 43-104 (104)
57 cd00270 MATH_TRAF_C Tumor Necr 82.9 13 0.00027 31.3 9.4 109 266-376 22-148 (149)
58 KOG1230 Protein containing rep 82.6 1.5 3.2E-05 43.3 3.9 40 237-280 206-252 (521)
59 PF13418 Kelch_4: Galactose ox 82.4 1.1 2.4E-05 30.0 2.2 21 256-280 1-22 (49)
60 KOG4152 Host cell transcriptio 80.5 2.9 6.4E-05 42.4 5.1 40 237-280 293-342 (830)
61 COG5201 SKP1 SCF ubiquitin lig 79.1 3 6.5E-05 34.4 4.0 58 9-66 39-120 (158)
62 KOG1230 Protein containing rep 78.7 2.4 5.3E-05 41.8 3.9 39 237-279 97-141 (521)
63 PF11822 DUF3342: Domain of un 78.3 0.82 1.8E-05 43.7 0.6 55 68-126 71-125 (317)
64 KOG4152 Host cell transcriptio 76.1 3 6.5E-05 42.3 3.8 38 238-279 230-273 (830)
65 KOG1987 Speckle-type POZ prote 75.6 2.4 5.3E-05 40.2 3.0 93 9-109 142-239 (297)
66 cd03776 MATH_TRAF6 Tumor Necro 73.2 22 0.00047 29.9 8.0 26 352-377 118-147 (147)
67 PF07713 DUF1604: Protein of u 73.2 1.3 2.8E-05 33.9 0.4 16 337-352 23-38 (87)
68 KOG2714 SETA binding protein S 72.3 3.7 8.1E-05 40.7 3.4 43 15-58 59-102 (465)
69 COG3055 Uncharacterized protei 70.3 4.6 9.9E-05 39.2 3.4 39 237-279 112-155 (381)
70 smart00061 MATH meprin and TRA 70.3 17 0.00036 27.3 6.2 74 265-346 14-91 (95)
71 KOG2715 Uncharacterized conser 69.2 3.7 7.9E-05 35.5 2.2 51 15-66 70-120 (210)
72 PF13418 Kelch_4: Galactose ox 67.7 5.9 0.00013 26.3 2.7 19 235-253 26-44 (49)
73 PF07707 BACK: BTB And C-termi 67.1 20 0.00044 27.6 6.1 25 42-66 2-26 (103)
74 cd03771 MATH_Meprin Meprin fam 56.0 79 0.0017 27.5 8.3 31 346-376 132-166 (167)
75 COG3002 Uncharacterized protei 54.9 5.3 0.00012 41.6 0.8 58 316-379 762-823 (880)
76 cd03777 MATH_TRAF3 Tumor Necro 54.5 1.4E+02 0.0031 26.3 9.8 18 268-285 62-81 (186)
77 PF07250 Glyoxal_oxid_N: Glyox 51.8 18 0.00038 33.6 3.7 41 236-280 89-138 (243)
78 cd03781 MATH_TRAF4 Tumor Necro 48.9 1.4E+02 0.0031 25.2 8.8 25 352-376 125-153 (154)
79 KOG3840 Uncharaterized conserv 46.8 16 0.00035 34.7 2.6 46 8-54 140-185 (438)
80 KOG0783 Uncharacterized conser 46.5 30 0.00066 37.5 4.7 52 8-60 609-681 (1267)
81 KOG2075 Topoisomerase TOP1-int 45.8 55 0.0012 33.3 6.2 45 68-120 184-228 (521)
82 smart00875 BACK BTB And C-term 39.8 1.4E+02 0.003 22.4 6.7 24 43-66 3-26 (101)
83 COG3055 Uncharacterized protei 37.6 45 0.00097 32.6 4.1 37 238-280 320-359 (381)
84 KOG2723 Uncharacterized conser 32.6 71 0.0015 29.2 4.4 46 15-60 56-102 (221)
85 KOG2437 Muskelin [Signal trans 26.8 77 0.0017 32.5 3.8 39 238-280 346-395 (723)
86 KOG2838 Uncharacterized conser 25.4 73 0.0016 30.0 3.2 70 7-78 300-397 (401)
87 KOG4427 E3 ubiquitin protein l 25.4 3.5E+02 0.0075 29.5 8.3 107 68-181 898-1019(1096)
88 PF00651 BTB: BTB/POZ domain; 24.5 62 0.0013 25.0 2.3 32 69-104 78-110 (111)
89 PF13570 PQQ_3: PQQ-like domai 22.6 96 0.0021 19.4 2.5 28 248-280 3-31 (40)
90 PF10070 DUF2309: Uncharacteri 21.3 48 0.001 36.2 1.4 51 312-364 698-752 (788)
91 PHA02152 hypothetical protein 21.3 11 0.00023 28.4 -2.5 38 329-366 32-69 (96)
92 COG4025 Predicted membrane pro 21.2 1E+02 0.0022 28.4 3.1 36 294-330 212-247 (284)
93 cd03780 MATH_TRAF5 Tumor Necro 20.9 5.1E+02 0.011 21.8 9.0 18 268-285 24-43 (148)
No 1
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=100.00 E-value=1.6e-49 Score=407.85 Aligned_cols=339 Identities=21% Similarity=0.339 Sum_probs=285.5
Q ss_pred CCCCCcceEEEecCCCCHHHHHHHhHhHhcCceecCCcchHHHHHHHHHHhchHhHHHHHHHHhhcCCCChHhHHHHHHh
Q 016908 1 MKESEQRHVALRINASEEAALMELLNFMYSNTLSTTAAPALLDVLMAADKFEVASCMRYCSRLLRNMPMTPESALLYLEL 80 (380)
Q Consensus 1 m~Es~~~~V~L~~~~v~~~~f~~lL~fiYtg~i~i~~~~~v~~ll~aA~~lqi~~l~~~C~~fL~~~~l~~~Ncl~i~~~ 80 (380)
|+|+.+++|+|+ ++++.+++.+++|+|||++.|+. +||++||.||++|||+.+++.|++||++ +|+++||++|..|
T Consensus 70 l~e~~~~~i~l~--~v~~~~l~~ll~y~Yt~~i~i~~-~nVq~ll~aA~~lQi~~v~~~C~~fL~~-~l~~~Nclgi~~~ 145 (571)
T KOG4441|consen 70 LKESKQKEINLE--GVDPETLELLLDYAYTGKLEISE-DNVQELLEAASLLQIPEVVDACCEFLES-QLDPSNCLGIRRF 145 (571)
T ss_pred cccccceEEEEe--cCCHHHHHHHHHHhhcceEEech-HhHHHHHHHHHHhhhHHHHHHHHHHHHh-cCCHHHHHHHHHH
Confidence 789999999999 99999999999999999999998 9999999999999999999999999999 9999999999999
Q ss_pred ccccccccchHHHHHHHHHHHhcccccccccchhhcccCHHHHHhhccCCCcCCCChHHHHHHHHHHHHhhCCChHHHHH
Q 016908 81 PSSVLMGEAVQPLTDAARQYLASRYKDMTKFQDEVMALPLAGVEAILSSDDLQIASEDAVYDFVLKWARAQYPRVEERRE 160 (380)
Q Consensus 81 a~~~~~~~~~~~L~~~a~~fi~~~f~~v~~~~~efl~L~~~~l~~lL~sd~L~v~~E~~v~~~v~~Wi~~d~~~~~~R~~ 160 (380)
|+ .++|.+|.+.|..||..||.++.+ ++||+.||.++|..+|++|+|+|.+|+.||+++++|++|| .+.|+.
T Consensus 146 a~----~~~~~~L~~~a~~~i~~~F~~v~~-~eefl~L~~~~l~~ll~~d~l~v~~E~~vf~a~~~Wv~~d---~~~R~~ 217 (571)
T KOG4441|consen 146 AE----LHSCTELLEVADEYILQHFAEVSK-TEEFLLLSLEELIGLLSSDDLNVDSEEEVFEAAMRWVKHD---FEEREE 217 (571)
T ss_pred HH----hcCcHHHHHHHHHHHHHHHHHHhc-cHHhhCCCHHHHHhhccccCCCcCCHHHHHHHHHHHHhcC---HhhHHH
Confidence 99 479999999999999999999999 9999999999999999999999999999999999999999 888999
Q ss_pred HHHHHhcccccCCCCCHHHHHhhhccCCCC--hhHHHHHHHHHHHhhhcCCcccccccccccccCCC-CccceEEE-e--
Q 016908 161 VLGSRLARFIRFPHMTCRKLKKVLTCNDFD--HDVASKLVLEALFFKAEAPHRQRTLAAEESVTLNR-RFVERAYK-Y-- 234 (380)
Q Consensus 161 ~l~~~Ll~~VRf~~l~~~~L~~~~~~~~l~--~~~c~~~i~ea~~~~~~~~~~~~~l~~~~~~p~~R-~~~~~ly~-~-- 234 (380)
++ +.|+++||||+|++.+|.+.+...+++ ++.|++++.++++||..| ..++.++.++++| | ...+.||+ +
T Consensus 218 ~~-~~ll~~vr~~ll~~~~l~~~v~~~~~~~~~~~c~~~l~ea~~~~~~~-~~~~~~~~~~t~~--r~~~~~~l~~vGG~ 293 (571)
T KOG4441|consen 218 HL-PALLEAVRLPLLPPQFLVEIVESEPLIKRDSACRDLLDEAKKYHLLP-QRRPVMQSPRTRP--RRSVSGKLVAVGGY 293 (571)
T ss_pred HH-HHHHHhcCccCCCHHHHHHHHhhhhhhccCHHHHHHHHHHHHHhhCc-ccCccccCCCccc--CcCCCCeEEEECCC
Confidence 99 999999999999999999999988876 478999999999999975 4566688999999 8 45588888 2
Q ss_pred ----cCCcEEEEecCCCCeeEE---cccCCcceeeEeeCCeEeeccceeecCC---ccccccc-------------ccCC
Q 016908 235 ----RPVKVVEFERPRQQCVVY---LDLKREECENLFPSGRVYSQAFHLGGQG---FFLSAHC-------------NMDQ 291 (380)
Q Consensus 235 ----~~~~~ve~ydp~~~~W~~---l~~~r~~~~~~~~~g~IY~~~~viGG~~---~~l~~~~-------------~~~~ 291 (380)
....+||+|||.++.|.. ||.+|.++++++++|+|| ++||++ ..+.... +|.+
T Consensus 294 ~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~~~~lY----v~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~ 369 (571)
T KOG4441|consen 294 NRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVLNGKLY----VVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNT 369 (571)
T ss_pred CCCCcccceeEEecCCcCcEeecCCCCcccccccEEEECCEEE----EEccccCCCcccceEEEecCCCCceeccCCccC
Confidence 235799999999999999 899999999999999999 999976 2333333 5555
Q ss_pred CCCceeeEEEEe-----eeccCcee-eEEe-eeeeecc----------ccccccccccceeEEeeCCc-------ccccc
Q 016908 292 QSSFHCFGLFLG-----MQEKGSVS-FAVD-YEFAARS----------KPTEEFVSKYKGNYTFTGGK-------AVGYR 347 (380)
Q Consensus 292 ~~~~~~~g~~~~-----~~~~~~~~-~~~~-~~~~~r~----------~~~~~~~~~~~~~~~~tg~~-------~~~~~ 347 (380)
.+..+.-+.+-| .+.+|... .+|| |++-... +..-.-+......|.++|.. +++++
T Consensus 370 ~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~Y 449 (571)
T KOG4441|consen 370 KRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECY 449 (571)
T ss_pred ccccceeEEECCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEEECCEEEEEcCcCCCccccceEEEE
Confidence 433333322222 23555555 5677 7764333 22222333445566666421 56999
Q ss_pred cCCCCCCceeee
Q 016908 348 NLFAIPWTSFMA 359 (380)
Q Consensus 348 ~~~~~~~~~~~~ 359 (380)
||.+-.|+..-.
T Consensus 450 DP~t~~W~~~~~ 461 (571)
T KOG4441|consen 450 DPETNTWTLIAP 461 (571)
T ss_pred cCCCCceeecCC
Confidence 999999987644
No 2
>PHA02713 hypothetical protein; Provisional
Probab=100.00 E-value=5.9e-43 Score=360.10 Aligned_cols=272 Identities=13% Similarity=0.137 Sum_probs=219.4
Q ss_pred CCCCC-cceEEEecCCCCHHHHHHHhHhHhcCceecCCcchHHHHHHHHHHhchHhHHHHHHHHhhcCCCChHhHHHHHH
Q 016908 1 MKESE-QRHVALRINASEEAALMELLNFMYSNTLSTTAAPALLDVLMAADKFEVASCMRYCSRLLRNMPMTPESALLYLE 79 (380)
Q Consensus 1 m~Es~-~~~V~L~~~~v~~~~f~~lL~fiYtg~i~i~~~~~v~~ll~aA~~lqi~~l~~~C~~fL~~~~l~~~Ncl~i~~ 79 (380)
|+|+. +++|+|+ ++++++|+.||+|+|||+ |+. +||++||.||++||++.|+++|++||.+ +|+++||++++.
T Consensus 60 ~~e~~~~~~v~l~--~v~~~~~~~ll~y~Yt~~--i~~-~nv~~ll~aA~~lqi~~l~~~C~~~l~~-~l~~~NCl~i~~ 133 (557)
T PHA02713 60 MIIRDLVTRVNLQ--MFDKDAVKNIVQYLYNRH--ISS-MNVIDVLKCADYLLIDDLVTDCESYIKD-YTNHDTCIYMYH 133 (557)
T ss_pred chhhccCceEEec--cCCHHHHHHHHHHhcCCC--CCH-HHHHHHHHHHHHHCHHHHHHHHHHHHHh-hCCccchHHHHH
Confidence 67764 8899999 999999999999999998 676 9999999999999999999999999999 999999999998
Q ss_pred hccccccccchHHHHHHHHHHHhcccccccccchhhcccCHHHHHhhccCCC-cCCCChHHHHHHHHHHHHhhCCChHHH
Q 016908 80 LPSSVLMGEAVQPLTDAARQYLASRYKDMTKFQDEVMALPLAGVEAILSSDD-LQIASEDAVYDFVLKWARAQYPRVEER 158 (380)
Q Consensus 80 ~a~~~~~~~~~~~L~~~a~~fi~~~f~~v~~~~~efl~L~~~~l~~lL~sd~-L~v~~E~~v~~~v~~Wi~~d~~~~~~R 158 (380)
++.. +.+.+|.++|.+||.+||.++.+ ++||++|+.++|.+||++|+ |+|.+|++||+++++|++|| ++.|
T Consensus 134 ~~~~----~~~~~L~~~a~~~i~~~f~~v~~-~~ef~~L~~~~l~~lL~~d~~l~v~~Ee~v~eav~~W~~~d---~~~r 205 (557)
T PHA02713 134 RLYE----MSHIPIVKYIKRMLMSNIPTLIT-TDAFKKTVFEILFDIISTNDNVYLYREGYKVTILLKWLEYN---YITE 205 (557)
T ss_pred HHHh----ccchHHHHHHHHHHHHHHHHHhC-ChhhhhCCHHHHHHHhccccccCCCcHHHHHHHHHHHHhcC---HHHH
Confidence 7763 46777999999999999999999 99999999999999999988 79999999999999999999 6666
Q ss_pred HHHHHHHhcccccCCCCCHHHHHhhhccCCCC--hhHHHHHHHHHHHhhhcCCcccccc---------------ccc---
Q 016908 159 REVLGSRLARFIRFPHMTCRKLKKVLTCNDFD--HDVASKLVLEALFFKAEAPHRQRTL---------------AAE--- 218 (380)
Q Consensus 159 ~~~l~~~Ll~~VRf~~l~~~~L~~~~~~~~l~--~~~c~~~i~ea~~~~~~~~~~~~~l---------------~~~--- 218 (380)
.+ + .+||++||||+|++.++. .+.+++++ .+.|++++.+++.++...+.....+ ..+
T Consensus 206 ~~-~-~~ll~~VR~~~l~~~~~~-~~~~~~~i~~~~~c~~~l~~a~~~~~~~~r~~~l~~~~g~~~~~~~~v~~yd~~~~ 282 (557)
T PHA02713 206 EQ-L-LCILSCIDIQNLDKKSRL-LLYSNKTINMYPSCIQFLLDNKQNRNIIPRQLCLVCHDTKYNVCNPCILVYNINTM 282 (557)
T ss_pred HH-H-hhhHhhhhHhhcchhhhh-hhcchHHHHhhHHHHHHHhhhhhhcccCCcceEEEEecCccccCCCCEEEEeCCCC
Confidence 54 6 799999999999999887 55556665 4689999999876543211100000 000
Q ss_pred -----ccccCCCCc------cceEEE-ec------CCcEEEEecCCCCeeEE---cccCCcceeeEeeCCeEeeccceee
Q 016908 219 -----ESVTLNRRF------VERAYK-YR------PVKVVEFERPRQQCVVY---LDLKREECENLFPSGRVYSQAFHLG 277 (380)
Q Consensus 219 -----~~~p~~R~~------~~~ly~-~~------~~~~ve~ydp~~~~W~~---l~~~r~~~~~~~~~g~IY~~~~viG 277 (380)
..-|.+|.. .+.||+ +| +.++|++|||.+++|.. ||.+|.++++++++|+|| ++|
T Consensus 283 ~W~~l~~mp~~r~~~~~a~l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~~g~IY----viG 358 (557)
T PHA02713 283 EYSVISTIPNHIINYASAIVDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVIDDTIY----AIG 358 (557)
T ss_pred eEEECCCCCccccceEEEEECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEECCEEE----EEC
Confidence 001111321 156787 22 24689999999999998 888999999999999999 999
Q ss_pred cCC--cccccccccCCCC
Q 016908 278 GQG--FFLSAHCNMDQQS 293 (380)
Q Consensus 278 G~~--~~l~~~~~~~~~~ 293 (380)
|.. ..+.....||+..
T Consensus 359 G~~~~~~~~sve~Ydp~~ 376 (557)
T PHA02713 359 GQNGTNVERTIECYTMGD 376 (557)
T ss_pred CcCCCCCCceEEEEECCC
Confidence 963 2233345566653
No 3
>PHA02790 Kelch-like protein; Provisional
Probab=100.00 E-value=8.9e-41 Score=338.95 Aligned_cols=248 Identities=16% Similarity=0.212 Sum_probs=197.8
Q ss_pred CCCCCcceEEEecCCCCHHHHHHHhHhHhcCceecCCcchHHHHHHHHHHhchHhHHHHHHHHhhcCCCChHhHHHHHHh
Q 016908 1 MKESEQRHVALRINASEEAALMELLNFMYSNTLSTTAAPALLDVLMAADKFEVASCMRYCSRLLRNMPMTPESALLYLEL 80 (380)
Q Consensus 1 m~Es~~~~V~L~~~~v~~~~f~~lL~fiYtg~i~i~~~~~v~~ll~aA~~lqi~~l~~~C~~fL~~~~l~~~Ncl~i~~~ 80 (380)
|+|+++ +|++...++++++|+.||+|+|||++.|+. +||+++|.||++||++.++++|++||.+ +|+++||++++.+
T Consensus 55 ~~Es~~-~v~~~~~~v~~~~l~~lldy~YTg~l~it~-~nV~~ll~aA~~Lqi~~v~~~C~~fL~~-~l~~~NCl~i~~~ 131 (480)
T PHA02790 55 YTKNKD-PVTRVCLDLDIHSLTSIVIYSYTGKVYIDS-HNVVNLLRASILTSVEFIIYTCINFILR-DFRKEYCVECYMM 131 (480)
T ss_pred cccccc-ceEEEecCcCHHHHHHHHHhheeeeEEEec-ccHHHHHHHHHHhChHHHHHHHHHHHHh-hCCcchHHHHHHH
Confidence 788854 677642389999999999999999999998 9999999999999999999999999999 9999999999999
Q ss_pred ccccccccchHHHHHHHHHHHhcccccccccc--hhhcccCHHHHHhhccCCCcCCCChHHHHHHHHHHHHhhCCChHHH
Q 016908 81 PSSVLMGEAVQPLTDAARQYLASRYKDMTKFQ--DEVMALPLAGVEAILSSDDLQIASEDAVYDFVLKWARAQYPRVEER 158 (380)
Q Consensus 81 a~~~~~~~~~~~L~~~a~~fi~~~f~~v~~~~--~efl~L~~~~l~~lL~sd~L~v~~E~~v~~~v~~Wi~~d~~~~~~R 158 (380)
|+ .|+|++|.++|.+||.+||.++.+ + ++|+.||. .+||++|+|+|.+|++||+++++|++|+ ..|
T Consensus 132 A~----~y~~~~L~~~a~~fi~~nF~~v~~-~~~~ef~~L~~---~~lLssd~L~v~~Ee~V~eav~~Wl~~~----~~~ 199 (480)
T PHA02790 132 GI----EYGLSNLLCHTKDFIAKHFLELED-DIIDNFDYLSM---KLILESDELNVPDEDYVVDFVIKWYMKR----RNR 199 (480)
T ss_pred HH----HhCHHHHHHHHHHHHHHhHHHHhc-ccchhhhhCCH---HHhcccccCCCccHHHHHHHHHHHHHhh----HHH
Confidence 99 479999999999999999999997 6 89999996 6899999999999999999999999996 456
Q ss_pred HHHHHHHhccc-ccCCCCCHHHHHhhhccCCCChhHHHHHHHHHHHhhhcCCccc----ccc-ccccc---ccC-----C
Q 016908 159 REVLGSRLARF-IRFPHMTCRKLKKVLTCNDFDHDVASKLVLEALFFKAEAPHRQ----RTL-AAEES---VTL-----N 224 (380)
Q Consensus 159 ~~~l~~~Ll~~-VRf~~l~~~~L~~~~~~~~l~~~~c~~~i~ea~~~~~~~~~~~----~~l-~~~~~---~p~-----~ 224 (380)
..++ .+++++ ||+++|++.++.+ +..++.++..++..+..+. +.. ..+.. .+. .
T Consensus 200 ~~~l-~~~vr~~ir~~~l~~~~l~~-----------~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (480)
T PHA02790 200 LGNL-LLLIKNVIRSNYLSPRGINN-----------VKWILDCTKIFHCDKQPRKSYKYPFIEYPMNMDQIIDIFHMCTS 267 (480)
T ss_pred HHHH-HHHHHhcCChhhCCHHHHHH-----------HHHHHHHHHHhhccccccccccccccccCCcccceeeccCCcce
Confidence 6666 666766 8999999888754 2233444443332110000 000 00000 000 0
Q ss_pred CCccceEEE-ec-----CCcEEEEecCCCCeeEE---cccCCcceeeEeeCCeEeeccceeecC
Q 016908 225 RRFVERAYK-YR-----PVKVVEFERPRQQCVVY---LDLKREECENLFPSGRVYSQAFHLGGQ 279 (380)
Q Consensus 225 R~~~~~ly~-~~-----~~~~ve~ydp~~~~W~~---l~~~r~~~~~~~~~g~IY~~~~viGG~ 279 (380)
....+.+|+ +| ..+++++|||.+++|.. |+.+|..+++++++|+|| ++||.
T Consensus 268 ~~~~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~~~~~iY----viGG~ 327 (480)
T PHA02790 268 THVGEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVPANNKLY----VVGGL 327 (480)
T ss_pred EEECCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEEECCEEE----EECCc
Confidence 112356777 32 35789999999999999 888999999999999999 99995
No 4
>PHA03098 kelch-like protein; Provisional
Probab=100.00 E-value=1.2e-38 Score=328.15 Aligned_cols=256 Identities=15% Similarity=0.233 Sum_probs=215.3
Q ss_pred cceEEEecCCCCHHHHHHHhHhHhcCceecCCcchHHHHHHHHHHhchHhHHHHHHHHhhcCCCChHhHHHHHHhccccc
Q 016908 6 QRHVALRINASEEAALMELLNFMYSNTLSTTAAPALLDVLMAADKFEVASCMRYCSRLLRNMPMTPESALLYLELPSSVL 85 (380)
Q Consensus 6 ~~~V~L~~~~v~~~~f~~lL~fiYtg~i~i~~~~~v~~ll~aA~~lqi~~l~~~C~~fL~~~~l~~~Ncl~i~~~a~~~~ 85 (380)
+++|+|+ + ++++|+.+|+|+|||++.++. +|+++||.+|++||++.|++.|++||.+ .|+++||+.++.+|+.
T Consensus 47 ~~~i~l~--~-~~~~~~~~l~y~Ytg~~~i~~-~~~~~ll~~A~~l~~~~l~~~C~~~l~~-~l~~~nc~~~~~~a~~-- 119 (534)
T PHA03098 47 ENEINLN--I-DYDSFNEVIKYIYTGKINITS-NNVKDILSIANYLIIDFLINLCINYIIK-IIDDNNCIDIYRFSFF-- 119 (534)
T ss_pred CceEEec--C-CHHHHHHHHHHhcCCceEEcH-HHHHHHHHHHHHhCcHHHHHHHHHHHHH-hCCHhHHHHHHHHHHH--
Confidence 5789998 8 999999999999999999997 9999999999999999999999999999 8999999999999984
Q ss_pred cccchHHHHHHHHHHHhcccccccccchhhcccCHHHHHhhccCCCcCCCChHHHHHHHHHHHHhhCCChHHHHHHHHHH
Q 016908 86 MGEAVQPLTDAARQYLASRYKDMTKFQDEVMALPLAGVEAILSSDDLQIASEDAVYDFVLKWARAQYPRVEERREVLGSR 165 (380)
Q Consensus 86 ~~~~~~~L~~~a~~fi~~~f~~v~~~~~efl~L~~~~l~~lL~sd~L~v~~E~~v~~~v~~Wi~~d~~~~~~R~~~l~~~ 165 (380)
+++.+|.+.|.+||.+||.++.+ +++|++||.+.|..||++|+|+|.+|++||+++++|++|| .++|.+++ ++
T Consensus 120 --~~~~~L~~~~~~~i~~nf~~v~~-~~~f~~l~~~~l~~ll~~~~L~v~~E~~v~~av~~W~~~~---~~~r~~~~-~~ 192 (534)
T PHA03098 120 --YGCKKLYSAAYNYIRNNIELIYN-DPDFIYLSKNELIKILSDDKLNVSSEDVVLEIIIKWLTSK---KNNKYKDI-CL 192 (534)
T ss_pred --cCcHHHHHHHHHHHHHHHHHHhc-CchhhcCCHHHHHHHhcCCCcCcCCHHHHHHHHHHHHhcC---hhhhHhHH-HH
Confidence 69999999999999999999999 9999999999999999999999999999999999999999 88999999 99
Q ss_pred hcccccCCCCCHHHHHhhhc------cCCCC-hhHHHHHHHHHHHhhhcCCcccc----cc----------------c--
Q 016908 166 LARFIRFPHMTCRKLKKVLT------CNDFD-HDVASKLVLEALFFKAEAPHRQR----TL----------------A-- 216 (380)
Q Consensus 166 Ll~~VRf~~l~~~~L~~~~~------~~~l~-~~~c~~~i~ea~~~~~~~~~~~~----~l----------------~-- 216 (380)
||++|||++|++++|.+++. +++++ ++.|...+.++..+......+.+ .+ .
T Consensus 193 ll~~vR~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 272 (534)
T PHA03098 193 ILKVLRITFLSEEGIKKLKRWKLRIKKKKIVFNKRCIKIIYSKKYNLNKILPRSSTFGSIIYIHITMSIFTYNYITNYSP 272 (534)
T ss_pred HHhhccccccCHHHHHHHHHHHhhcCCcceeccccchHHHHHHHhcccCCCcCccCCCcceEeecccchhhceeeecchh
Confidence 99999999999999998765 45554 45688888877665321100000 00 0
Q ss_pred -----ccccccCCCCc------cceEEE-ec------CCcEEEEecCCCCeeEE---cccCCcceeeEeeCCeEeeccce
Q 016908 217 -----AEESVTLNRRF------VERAYK-YR------PVKVVEFERPRQQCVVY---LDLKREECENLFPSGRVYSQAFH 275 (380)
Q Consensus 217 -----~~~~~p~~R~~------~~~ly~-~~------~~~~ve~ydp~~~~W~~---l~~~r~~~~~~~~~g~IY~~~~v 275 (380)
.....|. +.. .+.+|+ +| ..+.+.+|||.+++|.. ||.+|..+++++++|+|| +
T Consensus 273 ~~~~~~~~~~~~-~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~~~~ly----v 347 (534)
T PHA03098 273 LSEINTIIDIHY-VYCFGSVVLNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVFNNRIY----V 347 (534)
T ss_pred hhhcccccCccc-cccceEEEECCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEEECCEEE----E
Confidence 0000110 111 145677 22 24589999999999998 777999999999999999 9
Q ss_pred eecCC
Q 016908 276 LGGQG 280 (380)
Q Consensus 276 iGG~~ 280 (380)
+||.+
T Consensus 348 ~GG~~ 352 (534)
T PHA03098 348 IGGIY 352 (534)
T ss_pred EeCCC
Confidence 99964
No 5
>KOG4350 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=99.82 E-value=3.3e-20 Score=175.06 Aligned_cols=175 Identities=20% Similarity=0.319 Sum_probs=160.1
Q ss_pred CCCCCcceEEEecCCCCHHHHHHHhHhHhcCceecCCc--chHHHHHHHHHHhchHhHHHHHHHHhhcCCCChHhHHHHH
Q 016908 1 MKESEQRHVALRINASEEAALMELLNFMYSNTLSTTAA--PALLDVLMAADKFEVASCMRYCSRLLRNMPMTPESALLYL 78 (380)
Q Consensus 1 m~Es~~~~V~L~~~~v~~~~f~~lL~fiYtg~i~i~~~--~~v~~ll~aA~~lqi~~l~~~C~~fL~~~~l~~~Ncl~i~ 78 (380)
|+|+.|..|.|+ +-+.++|..+|+|||||++.++.. +.+.+.|..|+.|++..|..+.++||++ .|..+|.+.++
T Consensus 78 m~Es~q~~ipLq--~t~~eAF~~lLrYiYtg~~~l~~~~ed~lld~LslAh~Ygf~~Le~aiSeYl~~-iL~~~NvCmif 154 (620)
T KOG4350|consen 78 MQESHQQLIPLQ--ETNSEAFRALLRYIYTGKIDLAGVEEDILLDYLSLAHRYGFIQLETAISEYLKE-ILKNENVCMIF 154 (620)
T ss_pred hhhhhhcccccc--cccHHHHHHHHHHHhhcceecccchHHHHHHHHHHHHhcCcHHHHHHHHHHHHH-HHcccceeeee
Confidence 789999999999 888999999999999999998752 6788999999999999999999999999 89999999999
Q ss_pred HhccccccccchHHHHHHHHHHHhcccccccccchhhcccCHHHHHhhccCCCcCCCChHHHHHHHHHHHHhhCCChHHH
Q 016908 79 ELPSSVLMGEAVQPLTDAARQYLASRYKDMTKFQDEVMALPLAGVEAILSSDDLQIASEDAVYDFVLKWARAQYPRVEER 158 (380)
Q Consensus 79 ~~a~~~~~~~~~~~L~~~a~~fi~~~f~~v~~~~~efl~L~~~~l~~lL~sd~L~v~~E~~v~~~v~~Wi~~d~~~~~~R 158 (380)
..|.. |.+.+|...|..|+.+|..++.. .+.|..|+.+.|+++|..|..- ..|..+|.|+.+|-++| +.+
T Consensus 155 daA~l----y~l~~Lt~~C~mfmDrnA~~lL~-~~sFn~LSk~sL~e~l~RDsFf-ApE~~IFlAv~~W~~~N---ske- 224 (620)
T KOG4350|consen 155 DAAYL----YQLTDLTDYCMMFMDRNADQLLE-DPSFNRLSKDSLKELLARDSFF-APELKIFLAVRSWHQNN---SKE- 224 (620)
T ss_pred eHHHH----hcchHHHHHHHHHHhcCHHhhhc-CcchhhhhHHHHHHHHhhhccc-chHHHHHHHHHHHHhcC---chh-
Confidence 98874 69999999999999999999999 9999999999999999999886 46999999999999998 422
Q ss_pred HHHHHHHhcccccCCCCCHHHHHhhhccCCCCh
Q 016908 159 REVLGSRLARFIRFPHMTCRKLKKVLTCNDFDH 191 (380)
Q Consensus 159 ~~~l~~~Ll~~VRf~~l~~~~L~~~~~~~~l~~ 191 (380)
.. +.+++.||+|+|+.+.|.+++....+..
T Consensus 225 --~~-k~~~~~VRLPLm~lteLLnvVRPsGlls 254 (620)
T KOG4350|consen 225 --AS-KVLLELVRLPLMTLTELLNVVRPSGLLS 254 (620)
T ss_pred --hH-HHHHHHHhhhhccHHHHHhccCcccCcC
Confidence 23 6889999999999999999999877765
No 6
>PF07707 BACK: BTB And C-terminal Kelch; InterPro: IPR011705 This domain is found associated with (IPR000210 from INTERPRO) and (IPR006652 from INTERPRO). BTB (broad-complex, tramtrack and bric a brac) is a Kelch related domain, also known as the POZ domain []. BTB proteins are divided into subgroups depending on what domain lies at the C terminus. Despite the divergence in sequences, the BTB fold is highly conserved. BTB-Kelch proteins have Kelch repeats that form a beta-propeller that can interact with actin filaments []. BTB and C-terminal Kelch (BACK) together constitute a novel conserved domain, which is thought to have a possible role in substrate orientation in Cullin3-based E3 ligase complexes. Four domains, namely the BTB domain, a kelch domain, a BACK domain, and an intervening region (IVR) make up the aryl hydrocarbon receptor (AHR); a ligand-activated transcription factor []. This entry represents the domain associated with BTB and Kelch.; PDB: 3HVE_A 2EQX_A 3I3N_A 4AP2_A 4APF_A.
Probab=99.79 E-value=4.2e-20 Score=148.41 Aligned_cols=102 Identities=34% Similarity=0.629 Sum_probs=92.8
Q ss_pred HHHHHHhccccccccchHHHHHHHHHHHhcccccccccchhhcccCHHHHHhhccCCCcCCCChHHHHHHHHHHHHhhCC
Q 016908 74 ALLYLELPSSVLMGEAVQPLTDAARQYLASRYKDMTKFQDEVMALPLAGVEAILSSDDLQIASEDAVYDFVLKWARAQYP 153 (380)
Q Consensus 74 cl~i~~~a~~~~~~~~~~~L~~~a~~fi~~~f~~v~~~~~efl~L~~~~l~~lL~sd~L~v~~E~~v~~~v~~Wi~~d~~ 153 (380)
|++++.+|.. +++.+|.++|.+||..||.++.+ +++|++||.+.+..||+++++++.+|.+||+++++|++++
T Consensus 1 C~~i~~~A~~----~~~~~L~~~~~~~i~~nf~~v~~-~~~f~~L~~~~l~~iL~~~~l~v~~E~~v~~av~~W~~~~-- 73 (103)
T PF07707_consen 1 CLSIYRLAEK----YGLEELAEACLRFIAKNFNEVSK-SDEFLELPFDQLIEILSSDDLNVSSEDDVFEAVLRWLKHN-- 73 (103)
T ss_dssp HHHHHHHHHH----TT-HHHHHHHHHHHHHTHHHHTT-SHHHHCS-HHHHHHHHHTSS--ECTCCCHHHHHHHHHHCT--
T ss_pred ChhHHHHHHH----cChHHHHHHHHHHHHHHHHHHcc-chhhhcCCHHHHHHHHhccccccccHHHHHHHHHHHHHhC--
Confidence 8999999984 69999999999999999999999 9999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHhcccccCCCCCHHHHHhhh
Q 016908 154 RVEERREVLGSRLARFIRFPHMTCRKLKKVL 184 (380)
Q Consensus 154 ~~~~R~~~l~~~Ll~~VRf~~l~~~~L~~~~ 184 (380)
+++|.+++ ++|+++|||++|++++|.+.+
T Consensus 74 -~~~r~~~~-~~Ll~~iR~~~l~~~~L~~~v 102 (103)
T PF07707_consen 74 -PENREEHL-KELLSCIRFPLLSPEELQNVV 102 (103)
T ss_dssp -HHHHTTTH-HHHHCCCHHHCT-HHHHHHCC
T ss_pred -HHHHHHHH-HHHHHhCCcccCCHHHHHHHH
Confidence 88899999 999999999999999998865
No 7
>smart00875 BACK BTB And C-terminal Kelch. The BACK domain is found juxtaposed to the BTB domain; they are separated by as little as two residues.
Probab=99.71 E-value=3e-17 Score=130.81 Aligned_cols=99 Identities=27% Similarity=0.505 Sum_probs=91.4
Q ss_pred HHHHHHhccccccccchHHHHHHHHHHHhcccccccccchhhcccCHHHHHhhccCCCcCCCChHHHHHHHHHHHHhhCC
Q 016908 74 ALLYLELPSSVLMGEAVQPLTDAARQYLASRYKDMTKFQDEVMALPLAGVEAILSSDDLQIASEDAVYDFVLKWARAQYP 153 (380)
Q Consensus 74 cl~i~~~a~~~~~~~~~~~L~~~a~~fi~~~f~~v~~~~~efl~L~~~~l~~lL~sd~L~v~~E~~v~~~v~~Wi~~d~~ 153 (380)
|++++.+|+ .|++.+|.+.|.+||.+||.++.+ +++|++||.+.+..+|++|+++|.+|..+|+++++|++++
T Consensus 1 c~~i~~~a~----~~~~~~L~~~~~~~i~~nf~~~~~-~~~f~~L~~~~l~~iL~~d~l~v~~E~~v~~av~~W~~~~-- 73 (101)
T smart00875 1 CLGIRRFAE----LYGLEELLEKALRFILKNFLEVAQ-SEEFLELSLEQLLSLLSSDDLNVPSEEEVFEAVLRWVKHD-- 73 (101)
T ss_pred CHhHHHHHH----HhChHHHHHHHHHHHHHHHHHHhc-CcHHhcCCHHHHHHHhCcccCCCCCHHHHHHHHHHHHHCC--
Confidence 788899987 479999999999999999999998 8999999999999999999999988999999999999998
Q ss_pred ChHHHHHHHHHHhcccccCCCCCHHHHHh
Q 016908 154 RVEERREVLGSRLARFIRFPHMTCRKLKK 182 (380)
Q Consensus 154 ~~~~R~~~l~~~Ll~~VRf~~l~~~~L~~ 182 (380)
...|. ++ ..++++|||++|++++|.+
T Consensus 74 -~~~~~-~~-~~ll~~ir~~~~~~~~l~~ 99 (101)
T smart00875 74 -PERRR-HL-PELLSHVRFPLLSPEYLLE 99 (101)
T ss_pred -HHHHH-HH-HHHHHhCCCCCCCHHHHHh
Confidence 65555 77 8999999999999998865
No 8
>KOG2075 consensus Topoisomerase TOP1-interacting protein BTBD1 [Function unknown]
Probab=99.64 E-value=8.7e-16 Score=148.56 Aligned_cols=178 Identities=24% Similarity=0.398 Sum_probs=153.9
Q ss_pred CCCCcceEEEecCCCCHHHHHHHhHhHhcCceecCCcchHHHHHHHHHHhchHhHHHHHHHHhhcCCCChHhHHHHHHh-
Q 016908 2 KESEQRHVALRINASEEAALMELLNFMYSNTLSTTAAPALLDVLMAADKFEVASCMRYCSRLLRNMPMTPESALLYLEL- 80 (380)
Q Consensus 2 ~Es~~~~V~L~~~~v~~~~f~~lL~fiYtg~i~i~~~~~v~~ll~aA~~lqi~~l~~~C~~fL~~~~l~~~Ncl~i~~~- 80 (380)
.|+...+|.+. ++++.+|..+|+|||+..+.+.. +|+..+|.+|++|.++.+.+.|.+||+. ++-+.|.+..+.-
T Consensus 154 a~~~s~ei~lp--dvepaaFl~~L~flYsdev~~~~-dtvi~tl~~AkKY~VpaLer~CVkflr~-~l~~~naf~~L~q~ 229 (521)
T KOG2075|consen 154 AEDASLEIRLP--DVEPAAFLAFLRFLYSDEVKLAA-DTVITTLYAAKKYLVPALERQCVKFLRK-NLMADNAFLELFQR 229 (521)
T ss_pred ccccCceeecC--CcChhHhHHHHHHHhcchhhhhH-HHHHHHHHHHHHhhhHHHHHHHHHHHHH-hcCChHHHHHHHHH
Confidence 34445577776 99999999999999999999985 9999999999999999999999999999 8988888776654
Q ss_pred ccccccccchHHHHHHHHHHHhcccccccccchhhcccC--HHHHHhhccCCCcCCCChHHHHHHHHHHHHhhCC-----
Q 016908 81 PSSVLMGEAVQPLTDAARQYLASRYKDMTKFQDEVMALP--LAGVEAILSSDDLQIASEDAVYDFVLKWARAQYP----- 153 (380)
Q Consensus 81 a~~~~~~~~~~~L~~~a~~fi~~~f~~v~~~~~efl~L~--~~~l~~lL~sd~L~v~~E~~v~~~v~~Wi~~d~~----- 153 (380)
|.. ..-++|.+.|.+-|..+|.+... .|.|.+.. .+.++++|+++.+.+. |..+|+++++|++...+
T Consensus 230 A~l----f~ep~Li~~c~e~id~~~~~al~-~EGf~did~~~dt~~evl~r~~l~~~-e~~lfeA~lkw~~~e~~rs~~~ 303 (521)
T KOG2075|consen 230 AKL----FDEPSLISICLEVIDKSFEDALT-PEGFCDIDSTRDTYEEVLRRDTLEAR-EFRLFEAALKWAEAECQRSGGP 303 (521)
T ss_pred HHh----hcCHHHHHHHHHHhhhHHHhhhC-ccceeehhhHHHHHHHHHhhcccchh-HHHHHHHHHhhccCcchhhcCC
Confidence 552 57799999999999999999998 89999888 9999999999999985 99999999999987532
Q ss_pred -ChHHHHHHHHHHhcccccCCCCCHHHHHhhhccCCCC
Q 016908 154 -RVEERREVLGSRLARFIRFPHMTCRKLKKVLTCNDFD 190 (380)
Q Consensus 154 -~~~~R~~~l~~~Ll~~VRf~~l~~~~L~~~~~~~~l~ 190 (380)
+.+.+++.+ +..+..||||.|..+++..-++..++.
T Consensus 304 ~~~~~~~~vl-~~~l~lirfp~m~~Eefa~~~e~sgIl 340 (521)
T KOG2075|consen 304 VNGQNKRKVL-GRALSLIRFPFMNIEEFARGVEQSGIL 340 (521)
T ss_pred CCccchhhhh-hheeeeecccccchhhhccCccccCCc
Confidence 245677888 899999999999999887655555543
No 9
>KOG4682 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=99.50 E-value=8.5e-14 Score=132.03 Aligned_cols=142 Identities=18% Similarity=0.311 Sum_probs=132.2
Q ss_pred CCCCCcceEEEecCC--CCHHHHHHHhHhHhcCceecCCcchHHHHHHHHHHhchHhHHHHHHHHhhcCCCChHhHHHHH
Q 016908 1 MKESEQRHVALRINA--SEEAALMELLNFMYSNTLSTTAAPALLDVLMAADKFEVASCMRYCSRLLRNMPMTPESALLYL 78 (380)
Q Consensus 1 m~Es~~~~V~L~~~~--v~~~~f~~lL~fiYtg~i~i~~~~~v~~ll~aA~~lqi~~l~~~C~~fL~~~~l~~~Ncl~i~ 78 (380)
.+|+++..|+|.|++ |+..+|..++.-+|..++.|.. +.|..+|.||.+||++++.+.|.+-|.+ .|++.|.+++|
T Consensus 102 w~es~~~iIqleI~Dp~Id~~al~~a~gsLY~dEveI~l-~dv~gvlAaA~~lqldgl~qrC~evMie-~lspkta~~yY 179 (488)
T KOG4682|consen 102 WKESSMNIIQLEIPDPNIDVVALQVAFGSLYRDEVEIKL-SDVVGVLAAACLLQLDGLIQRCGEVMIE-TLSPKTACGYY 179 (488)
T ss_pred cChhhCceEEEEcCCCcccHHHHHHHHhhhhhhheeccH-HHHHHHHHHHHHHHHhhHHHHHHHHHHH-hcChhhhhHhh
Confidence 378899988888855 9999999999999999999986 9999999999999999999999999999 89999999999
Q ss_pred HhccccccccchHHHHHHHHHHHhcccccccccchhhcccCHHHHHhhccCCCcCCCC-hHHHHHHHHHHHH
Q 016908 79 ELPSSVLMGEAVQPLTDAARQYLASRYKDMTKFQDEVMALPLAGVEAILSSDDLQIAS-EDAVYDFVLKWAR 149 (380)
Q Consensus 79 ~~a~~~~~~~~~~~L~~~a~~fi~~~f~~v~~~~~efl~L~~~~l~~lL~sd~L~v~~-E~~v~~~v~~Wi~ 149 (380)
..+.. |++..+.+.|.+++..|+..+.. ..-+.+++.+.+..+|.|++|-|-+ |.++|..+..|+-
T Consensus 180 ea~ck----Ygle~vk~kc~ewl~~nl~~i~~-~q~l~ei~~~Lm~~ll~SpnLfvmq~EfdLyttlk~Wmf 246 (488)
T KOG4682|consen 180 EAACK----YGLESVKKKCLEWLLNNLMTIQN-VQLLKEISINLMKQLLGSPNLFVMQVEFDLYTTLKKWMF 246 (488)
T ss_pred hhhhh----hhhHHHHHHHHHHHHHhhHhhhh-HHHHHhcCHHHHHHHhCCCCeEEEEeeehHHHHHHHHHH
Confidence 99984 79999999999999999999987 6677799999999999999998766 9999999999973
No 10
>KOG4591 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=99.15 E-value=1.3e-10 Score=101.06 Aligned_cols=113 Identities=13% Similarity=0.296 Sum_probs=103.4
Q ss_pred CCCCHHHHHHHhHhHhcCceecCCc-chHHHHHHHHHHhchHhHHHHHHHHhhcCCCChHhHHHHHHhccccccccchHH
Q 016908 14 NASEEAALMELLNFMYSNTLSTTAA-PALLDVLMAADKFEVASCMRYCSRLLRNMPMTPESALLYLELPSSVLMGEAVQP 92 (380)
Q Consensus 14 ~~v~~~~f~~lL~fiYtg~i~i~~~-~~v~~ll~aA~~lqi~~l~~~C~~fL~~~~l~~~Ncl~i~~~a~~~~~~~~~~~ 92 (380)
.++++++|...++||||.++.+... +-+.++.+.|+.||+.-+++.|.+-+.. .++++||+.+|.+|+. .+...
T Consensus 111 dDad~Ea~~t~iRWIYTDEidfk~dD~~L~el~e~An~FqLe~Lke~C~k~l~a-~l~V~NCIk~Ye~AEe----~n~~q 185 (280)
T KOG4591|consen 111 DDADFEAFHTAIRWIYTDEIDFKEDDEFLLELCELANRFQLELLKERCEKGLGA-LLHVDNCIKFYEFAEE----LNARQ 185 (280)
T ss_pred cccCHHHHHHhheeeeccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhh-HhhHhhHHHHHHHHHH----hhHHH
Confidence 3899999999999999999998752 4568999999999999999999999999 7999999999999994 48899
Q ss_pred HHHHHHHHHhcccccccccchhhcccCHHHHHhhccCCCcC
Q 016908 93 LTDAARQYLASRYKDMTKFQDEVMALPLAGVEAILSSDDLQ 133 (380)
Q Consensus 93 L~~~a~~fi~~~f~~v~~~~~efl~L~~~~l~~lL~sd~L~ 133 (380)
|.+.|...|+.+..++-+ ++|-++++..|..++.+..-+
T Consensus 186 L~n~~~eiIA~~W~dL~~--a~FaqMs~aLLYklId~kTe~ 224 (280)
T KOG4591|consen 186 LMNVAAEIIAGAWDDLGK--ADFAQMSAALLYKLIDGKTEN 224 (280)
T ss_pred HHHHHHHHHHhhccccCh--HHHHhccHHHHHHHHcCCCcc
Confidence 999999999999999986 999999999999999987543
No 11
>PHA02713 hypothetical protein; Provisional
Probab=98.81 E-value=5.3e-07 Score=93.64 Aligned_cols=98 Identities=9% Similarity=0.082 Sum_probs=61.4
Q ss_pred cEEEEecCCCCeeEE---cccCCcceeeEeeCCeEeeccceeecCCc---ccccccccCCCCCceeeEEEEeeeccCcee
Q 016908 238 KVVEFERPRQQCVVY---LDLKREECENLFPSGRVYSQAFHLGGQGF---FLSAHCNMDQQSSFHCFGLFLGMQEKGSVS 311 (380)
Q Consensus 238 ~~ve~ydp~~~~W~~---l~~~r~~~~~~~~~g~IY~~~~viGG~~~---~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 311 (380)
..+++|||.+++|.. ||.+|.++++++++|+|| ++||... .+.....||+... .| .+-++++
T Consensus 272 ~~v~~yd~~~~~W~~l~~mp~~r~~~~~a~l~~~IY----viGG~~~~~~~~~~v~~Yd~~~n--~W------~~~~~m~ 339 (557)
T PHA02713 272 PCILVYNINTMEYSVISTIPNHIINYASAIVDNEII----IAGGYNFNNPSLNKVYKINIENK--IH------VELPPMI 339 (557)
T ss_pred CCEEEEeCCCCeEEECCCCCccccceEEEEECCEEE----EEcCCCCCCCccceEEEEECCCC--eE------eeCCCCc
Confidence 478999999999998 888999999999999999 9999631 1222333444321 12 1222111
Q ss_pred eEEeeeeeeccccccccccccceeEEeeCC------cccccccCCCCCCce
Q 016908 312 FAVDYEFAARSKPTEEFVSKYKGNYTFTGG------KAVGYRNLFAIPWTS 356 (380)
Q Consensus 312 ~~~~~~~~~r~~~~~~~~~~~~~~~~~tg~------~~~~~~~~~~~~~~~ 356 (380)
..|... .-+....+.|.++|. .+++++|+..-.|+.
T Consensus 340 -------~~R~~~--~~~~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~ 381 (557)
T PHA02713 340 -------KNRCRF--SLAVIDDTIYAIGGQNGTNVERTIECYTMGDDKWKM 381 (557)
T ss_pred -------chhhce--eEEEECCEEEEECCcCCCCCCceEEEEECCCCeEEE
Confidence 112211 112334567777753 246888998888875
No 12
>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation []. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule []. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [, , ]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.; GO: 0005515 protein binding; PDB: 3M5B_A 1R28_B 3LBZ_A 3E4U_F 3BIM_B 1R2B_A 1R29_A 2VPK_A 2YY9_B 3GA1_A ....
Probab=98.62 E-value=8.7e-08 Score=77.36 Aligned_cols=58 Identities=19% Similarity=0.438 Sum_probs=53.1
Q ss_pred cceEEEecCCCCHHHHHHHhHhHhcCceecC-CcchHHHHHHHHHHhchHhHHHHHHHHhhc
Q 016908 6 QRHVALRINASEEAALMELLNFMYSNTLSTT-AAPALLDVLMAADKFEVASCMRYCSRLLRN 66 (380)
Q Consensus 6 ~~~V~L~~~~v~~~~f~~lL~fiYtg~i~i~-~~~~v~~ll~aA~~lqi~~l~~~C~~fL~~ 66 (380)
..+|.+. ++++++|..+++|+|+|++.++ . +++.+++.+|++|+++.|++.|.++|.+
T Consensus 51 ~~~i~~~--~~~~~~~~~~l~~~Y~~~~~~~~~-~~~~~ll~lA~~~~~~~L~~~~~~~l~~ 109 (111)
T PF00651_consen 51 VPEISLP--DVSPEAFEAFLEYMYTGEIEINSD-ENVEELLELADKLQIPELKKACEKFLQE 109 (111)
T ss_dssp EEEEEET--TSCHHHHHHHHHHHHHSEEEEE-T-TTHHHHHHHHHHTTBHHHHHHHHHHHHH
T ss_pred ccccccc--cccccccccccccccCCcccCCHH-HHHHHHHHHHHHhCcHHHHHHHHHHHHh
Confidence 3456665 9999999999999999999997 7 9999999999999999999999999986
No 13
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=98.61 E-value=1.3e-07 Score=98.07 Aligned_cols=107 Identities=18% Similarity=0.190 Sum_probs=76.8
Q ss_pred ceEEEe------cCCcEEEEecCCCCeeEE---cccCCcceeeEeeCCeEeeccceeecCC--c-ccccccccCCCCCce
Q 016908 229 ERAYKY------RPVKVVEFERPRQQCVVY---LDLKREECENLFPSGRVYSQAFHLGGQG--F-FLSAHCNMDQQSSFH 296 (380)
Q Consensus 229 ~~ly~~------~~~~~ve~ydp~~~~W~~---l~~~r~~~~~~~~~g~IY~~~~viGG~~--~-~l~~~~~~~~~~~~~ 296 (380)
+.||+. ..+++||+|||.+++|.. |+.+|..||+++++|+|| ++||.. . ++.+...|||. ..
T Consensus 381 g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~~g~iY----i~GG~~~~~~~l~sve~YDP~--t~ 454 (571)
T KOG4441|consen 381 GKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVLGGKLY----IIGGGDGSSNCLNSVECYDPE--TN 454 (571)
T ss_pred CEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEEECCEEE----EEcCcCCCccccceEEEEcCC--CC
Confidence 678882 347899999999999999 778999999999999999 999952 2 56667778886 44
Q ss_pred eeEEEEeee--ccCceeeEEeeeeeeccccccccccccceeEEeeC------CcccccccCCCCCCceee
Q 016908 297 CFGLFLGMQ--EKGSVSFAVDYEFAARSKPTEEFVSKYKGNYTFTG------GKAVGYRNLFAIPWTSFM 358 (380)
Q Consensus 297 ~~g~~~~~~--~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~tg------~~~~~~~~~~~~~~~~~~ 358 (380)
.|...-.|. +.+-+ + +.-...+|.++| -.+++++|+.+-.|+.+-
T Consensus 455 ~W~~~~~M~~~R~~~g-~----------------a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~ 507 (571)
T KOG4441|consen 455 TWTLIAPMNTRRSGFG-V----------------AVLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVA 507 (571)
T ss_pred ceeecCCcccccccce-E----------------EEECCEEEEECCccCCCccceEEEEcCCCCceeEcc
Confidence 443344443 22211 1 112445677775 224799999999999873
No 14
>smart00225 BTB Broad-Complex, Tramtrack and Bric a brac. Domain in Broad-Complex, Tramtrack and Bric a brac. Also known as POZ (poxvirus and zinc finger) domain. Known to be a protein-protein interaction motif found at the N-termini of several C2H2-type transcription factors as well as Shaw-type potassium channels. Known structure reveals a tightly intertwined dimer formed via interactions between N-terminal strand and helix structures. However in a subset of BTB/POZ domains, these two secondary structures appear to be missing. Be aware SMART predicts BTB/POZ domains without the beta1- and alpha1-secondary structures.
Probab=98.42 E-value=3.9e-07 Score=69.71 Aligned_cols=54 Identities=19% Similarity=0.408 Sum_probs=49.5
Q ss_pred CcceEEEecCCCCHHHHHHHhHhHhcCceecCCcchHHHHHHHHHHhchHhHHHHHH
Q 016908 5 EQRHVALRINASEEAALMELLNFMYSNTLSTTAAPALLDVLMAADKFEVASCMRYCS 61 (380)
Q Consensus 5 ~~~~V~L~~~~v~~~~f~~lL~fiYtg~i~i~~~~~v~~ll~aA~~lqi~~l~~~C~ 61 (380)
.+..|.+. ++++.+|+.+++|+|+|++.++. +++..++.+|++|+++.+++.|+
T Consensus 37 ~~~~i~l~--~~~~~~f~~~l~~ly~~~~~~~~-~~~~~l~~~a~~~~~~~l~~~c~ 90 (90)
T smart00225 37 KKSEIYLD--DVSPEDFRALLEFLYTGKLDLPE-ENVEELLELADYLQIPGLVELCE 90 (90)
T ss_pred CCCEEEec--CCCHHHHHHHHHeecCceeecCH-HHHHHHHHHHHHHCcHHHHhhhC
Confidence 45677777 89999999999999999999987 89999999999999999999884
No 15
>PHA02790 Kelch-like protein; Provisional
Probab=98.27 E-value=3.4e-06 Score=86.18 Aligned_cols=48 Identities=19% Similarity=0.081 Sum_probs=41.8
Q ss_pred ceEEEec---CCcEEEEecCCCCeeEE---cccCCcceeeEeeCCeEeeccceeecCC
Q 016908 229 ERAYKYR---PVKVVEFERPRQQCVVY---LDLKREECENLFPSGRVYSQAFHLGGQG 280 (380)
Q Consensus 229 ~~ly~~~---~~~~ve~ydp~~~~W~~---l~~~r~~~~~~~~~g~IY~~~~viGG~~ 280 (380)
+.||+.| ..++||+|||.+++|.. ||.+|.++++++++|+|| ++||..
T Consensus 319 ~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~~~~~~~~g~IY----viGG~~ 372 (480)
T PHA02790 319 NKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCNPAVASINNVIY----VIGGHS 372 (480)
T ss_pred CEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCcccEEEEECCEEE----EecCcC
Confidence 6788832 24789999999999999 888999999999999999 999964
No 16
>PHA03098 kelch-like protein; Provisional
Probab=98.26 E-value=9.1e-06 Score=84.08 Aligned_cols=47 Identities=21% Similarity=0.180 Sum_probs=41.1
Q ss_pred ceEEE-ec-----CCcEEEEecCCCCeeEE---cccCCcceeeEeeCCeEeeccceeecC
Q 016908 229 ERAYK-YR-----PVKVVEFERPRQQCVVY---LDLKREECENLFPSGRVYSQAFHLGGQ 279 (380)
Q Consensus 229 ~~ly~-~~-----~~~~ve~ydp~~~~W~~---l~~~r~~~~~~~~~g~IY~~~~viGG~ 279 (380)
+.||+ +| ..+++++|||.+++|.. ||.+|.++++++++|+|| ++||.
T Consensus 343 ~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~~~~~~iY----v~GG~ 398 (534)
T PHA03098 343 NRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNPCVVNVNNLIY----VIGGI 398 (534)
T ss_pred CEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccceEEEECCEEE----EECCc
Confidence 66787 22 35789999999999999 888999999999999999 99994
No 17
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=97.89 E-value=2.5e-05 Score=81.04 Aligned_cols=97 Identities=11% Similarity=0.250 Sum_probs=81.9
Q ss_pred EEEecCCCCHHHHHHHhHhHhc-CceecCC----cchHHHHHHHHHHhchHhHHHHHHHHhhcCCCChHhHHHHHHhccc
Q 016908 9 VALRINASEEAALMELLNFMYS-NTLSTTA----APALLDVLMAADKFEVASCMRYCSRLLRNMPMTPESALLYLELPSS 83 (380)
Q Consensus 9 V~L~~~~v~~~~f~~lL~fiYt-g~i~i~~----~~~v~~ll~aA~~lqi~~l~~~C~~fL~~~~l~~~Ncl~i~~~a~~ 83 (380)
|++.+..+..+.|+.+|+|+|+ .+..+-. .+-+.++|..||.|.|.+|+..|+.-|.+ .|+..||-.+++||.+
T Consensus 751 ~t~~~~p~~~e~m~ivLdylYs~d~~~~~k~~~~~dF~~~il~iaDqlli~~Lk~Ice~~ll~-kl~lk~~~~llefaam 829 (1267)
T KOG0783|consen 751 ITVNLSPLTVEHMSIVLDYLYSDDKVELFKDLKESDFMFEILSIADQLLILELKSICEQSLLR-KLNLKTLPTLLEFAAM 829 (1267)
T ss_pred ceeecCcchHHHHHHHHHHHHccchHHHHhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHh-HhcccchHHHHHHHHH
Confidence 5655335679999999999994 4443311 25678999999999999999999999999 8999999999999985
Q ss_pred cccccchHHHHHHHHHHHhcccccccc
Q 016908 84 VLMGEAVQPLTDAARQYLASRYKDMTK 110 (380)
Q Consensus 84 ~~~~~~~~~L~~~a~~fi~~~f~~v~~ 110 (380)
|.+.+|...|.+||+.|...+..
T Consensus 830 ----Y~ak~L~~~C~dfic~N~~~~Le 852 (1267)
T KOG0783|consen 830 ----YHAKELYSRCIDFICHNIEFFLE 852 (1267)
T ss_pred ----hhHHHHHHHHHHHHHHhHHHHHH
Confidence 69999999999999999877653
No 18
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=97.50 E-value=0.00043 Score=67.53 Aligned_cols=38 Identities=11% Similarity=0.046 Sum_probs=34.8
Q ss_pred cEEEEecCCCCeeEE---ccc-CCcceeeEeeCCeEeeccceeecC
Q 016908 238 KVVEFERPRQQCVVY---LDL-KREECENLFPSGRVYSQAFHLGGQ 279 (380)
Q Consensus 238 ~~ve~ydp~~~~W~~---l~~-~r~~~~~~~~~g~IY~~~~viGG~ 279 (380)
+.||+|||.+++|+. ||. +|.++++++++|+|| ++||.
T Consensus 168 ~~v~~YDp~t~~W~~~~~~p~~~r~~~~~~~~~~~iy----v~GG~ 209 (346)
T TIGR03547 168 KNVLSYDPSTNQWRNLGENPFLGTAGSAIVHKGNKLL----LINGE 209 (346)
T ss_pred ceEEEEECCCCceeECccCCCCcCCCceEEEECCEEE----EEeee
Confidence 689999999999999 775 688999999999999 99996
No 19
>PLN02153 epithiospecifier protein
Probab=97.42 E-value=0.00044 Score=67.39 Aligned_cols=48 Identities=17% Similarity=0.158 Sum_probs=40.6
Q ss_pred ceEEEe------cCCcEEEEecCCCCeeEE---c-----ccCCcceeeEeeCCeEeeccceeecCC
Q 016908 229 ERAYKY------RPVKVVEFERPRQQCVVY---L-----DLKREECENLFPSGRVYSQAFHLGGQG 280 (380)
Q Consensus 229 ~~ly~~------~~~~~ve~ydp~~~~W~~---l-----~~~r~~~~~~~~~g~IY~~~~viGG~~ 280 (380)
+.||+. +..+.+++|||.+++|.. | |.+|..|++++.+++|| ++||..
T Consensus 86 ~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iy----v~GG~~ 147 (341)
T PLN02153 86 TKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASDENHVY----VFGGVS 147 (341)
T ss_pred CEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEECCEEE----EECCcc
Confidence 678872 235789999999999997 4 67899999999999999 999963
No 20
>smart00612 Kelch Kelch domain.
Probab=97.37 E-value=0.00024 Score=47.47 Aligned_cols=32 Identities=19% Similarity=0.119 Sum_probs=28.3
Q ss_pred CCcEEEEecCCCCeeEE---cccCCcceeeEeeCC
Q 016908 236 PVKVVEFERPRQQCVVY---LDLKREECENLFPSG 267 (380)
Q Consensus 236 ~~~~ve~ydp~~~~W~~---l~~~r~~~~~~~~~g 267 (380)
..+.+++|||.+++|.. |+.+|..+++++++|
T Consensus 13 ~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~g 47 (47)
T smart00612 13 RLKSVEVYDPETNKWTPLPSMPTPRSGHGVAVING 47 (47)
T ss_pred eeeeEEEECCCCCeEccCCCCCCccccceEEEeCC
Confidence 35789999999999998 889999999988775
No 21
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=97.26 E-value=0.001 Score=64.34 Aligned_cols=48 Identities=15% Similarity=0.050 Sum_probs=40.1
Q ss_pred ceEEEe-c-----CCcEEEEecCCCCeeEE---cc-cCCcceeeEeeCCeEeeccceeecCC
Q 016908 229 ERAYKY-R-----PVKVVEFERPRQQCVVY---LD-LKREECENLFPSGRVYSQAFHLGGQG 280 (380)
Q Consensus 229 ~~ly~~-~-----~~~~ve~ydp~~~~W~~---l~-~~r~~~~~~~~~g~IY~~~~viGG~~ 280 (380)
+.||+. + ..+.+++|||.+++|+. || .+|..+++++++++|| ++||..
T Consensus 124 ~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~r~~~~~~~~~~~iY----v~GG~~ 181 (323)
T TIGR03548 124 GTLYVGGGNRNGKPSNKSYLFNLETQEWFELPDFPGEPRVQPVCVKLQNELY----VFGGGS 181 (323)
T ss_pred CEEEEEeCcCCCccCceEEEEcCCCCCeeECCCCCCCCCCcceEEEECCEEE----EEcCCC
Confidence 678882 2 36799999999999998 55 3688888899999999 999963
No 22
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=97.24 E-value=0.0013 Score=65.20 Aligned_cols=38 Identities=11% Similarity=0.110 Sum_probs=34.4
Q ss_pred cEEEEecCCCCeeEE---ccc-CCcceeeEeeCCeEeeccceeecC
Q 016908 238 KVVEFERPRQQCVVY---LDL-KREECENLFPSGRVYSQAFHLGGQ 279 (380)
Q Consensus 238 ~~ve~ydp~~~~W~~---l~~-~r~~~~~~~~~g~IY~~~~viGG~ 279 (380)
+.|++|||.+++|+. ||. +|.++++++.+++|| ++||.
T Consensus 189 ~~v~~YD~~t~~W~~~~~~p~~~~~~~a~v~~~~~iY----v~GG~ 230 (376)
T PRK14131 189 KEVLSYDPSTNQWKNAGESPFLGTAGSAVVIKGNKLW----LINGE 230 (376)
T ss_pred ceEEEEECCCCeeeECCcCCCCCCCcceEEEECCEEE----EEeee
Confidence 679999999999998 675 688889999999999 99995
No 23
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=97.22 E-value=0.0011 Score=64.07 Aligned_cols=47 Identities=17% Similarity=0.109 Sum_probs=39.4
Q ss_pred ceEEE-ec-----CCcEEEEecCCCCee----EE---cccCCcceeeEeeCCeEeeccceeecC
Q 016908 229 ERAYK-YR-----PVKVVEFERPRQQCV----VY---LDLKREECENLFPSGRVYSQAFHLGGQ 279 (380)
Q Consensus 229 ~~ly~-~~-----~~~~ve~ydp~~~~W----~~---l~~~r~~~~~~~~~g~IY~~~~viGG~ 279 (380)
+.||+ ++ ..+.+++||+.+++| .. ||.+|..+++++++++|| ++||.
T Consensus 73 ~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~~~~iY----v~GG~ 132 (323)
T TIGR03548 73 NGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACYKDGTLY----VGGGN 132 (323)
T ss_pred CEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEECCEEE----EEeCc
Confidence 56777 22 357999999999998 44 788899999999999999 99995
No 24
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=97.01 E-value=0.00089 Score=65.31 Aligned_cols=39 Identities=13% Similarity=-0.082 Sum_probs=35.7
Q ss_pred cEEEEecCCCCeeEE---cccCCcceeeEeeCCeEeeccceeecCC
Q 016908 238 KVVEFERPRQQCVVY---LDLKREECENLFPSGRVYSQAFHLGGQG 280 (380)
Q Consensus 238 ~~ve~ydp~~~~W~~---l~~~r~~~~~~~~~g~IY~~~~viGG~~ 280 (380)
.++|+|||.+++|+. ||.+|..+++++++|+|| ++||+.
T Consensus 290 ~~~e~yd~~~~~W~~~~~lp~~~~~~~~~~~~~~iy----v~GG~~ 331 (346)
T TIGR03547 290 WSSEVYALDNGKWSKVGKLPQGLAYGVSVSWNNGVL----LIGGEN 331 (346)
T ss_pred eEeeEEEecCCcccccCCCCCCceeeEEEEcCCEEE----EEeccC
Confidence 378999999999998 888999999999999999 999974
No 25
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=96.71 E-value=0.0018 Score=64.12 Aligned_cols=38 Identities=13% Similarity=-0.094 Sum_probs=35.2
Q ss_pred EEEEecCCCCeeEE---cccCCcceeeEeeCCeEeeccceeecCC
Q 016908 239 VVEFERPRQQCVVY---LDLKREECENLFPSGRVYSQAFHLGGQG 280 (380)
Q Consensus 239 ~ve~ydp~~~~W~~---l~~~r~~~~~~~~~g~IY~~~~viGG~~ 280 (380)
++|.|||.+++|+. ||.+|.++++++++|.|| ++||..
T Consensus 313 ~~e~yd~~~~~W~~~~~lp~~r~~~~av~~~~~iy----v~GG~~ 353 (376)
T PRK14131 313 SDEIYALVNGKWQKVGELPQGLAYGVSVSWNNGVL----LIGGET 353 (376)
T ss_pred ehheEEecCCcccccCcCCCCccceEEEEeCCEEE----EEcCCC
Confidence 58999999999988 899999999999999999 999964
No 26
>PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised. This family is found in bacteria. This presumed domain is typically between 170 to 303 amino acids in length. The N-terminal half of this family is a BTB-like domain.
Probab=96.49 E-value=0.0021 Score=61.05 Aligned_cols=60 Identities=12% Similarity=0.302 Sum_probs=53.1
Q ss_pred ceEEEecCCCCHHHHHHHhHhHhcCceecCCcchHHHHHHHHHHhchHhHHHHHHHHhhcCCC
Q 016908 7 RHVALRINASEEAALMELLNFMYSNTLSTTAAPALLDVLMAADKFEVASCMRYCSRLLRNMPM 69 (380)
Q Consensus 7 ~~V~L~~~~v~~~~f~~lL~fiYtg~i~i~~~~~v~~ll~aA~~lqi~~l~~~C~~fL~~~~l 69 (380)
++|.|.+ .-|-.+|+-|++|+......++. +||..||..|+||||++|++.|..|+.+ ++
T Consensus 45 ~~idisV-hCDv~iF~WLm~yv~~~~p~l~~-~NvvsIliSS~FL~M~~Lve~cl~y~~~-~~ 104 (317)
T PF11822_consen 45 EEIDISV-HCDVHIFEWLMRYVKGEPPSLTP-SNVVSILISSEFLQMESLVEECLQYCHD-HM 104 (317)
T ss_pred CCcceEE-ecChhHHHHHHHHhhcCCCcCCc-CcEEEeEehhhhhccHHHHHHHHHHHHH-hH
Confidence 4566664 46899999999999999999986 9999999999999999999999999988 54
No 27
>PLN02153 epithiospecifier protein
Probab=96.39 E-value=0.0057 Score=59.58 Aligned_cols=40 Identities=15% Similarity=0.106 Sum_probs=35.8
Q ss_pred CcEEEEecCCCCeeEE------cccCCcceeeEeeCCeEeeccceeecCC
Q 016908 237 VKVVEFERPRQQCVVY------LDLKREECENLFPSGRVYSQAFHLGGQG 280 (380)
Q Consensus 237 ~~~ve~ydp~~~~W~~------l~~~r~~~~~~~~~g~IY~~~~viGG~~ 280 (380)
.+.+++|||.+++|+. +|.+|..+++++++++|| ++||..
T Consensus 216 ~~~v~~yd~~~~~W~~~~~~g~~P~~r~~~~~~~~~~~iy----v~GG~~ 261 (341)
T PLN02153 216 SNAVQFFDPASGKWTEVETTGAKPSARSVFAHAVVGKYII----IFGGEV 261 (341)
T ss_pred cCceEEEEcCCCcEEeccccCCCCCCcceeeeEEECCEEE----EECccc
Confidence 4689999999999998 467899999999999999 999964
No 28
>PLN02193 nitrile-specifier protein
Probab=96.35 E-value=0.0064 Score=62.06 Aligned_cols=47 Identities=15% Similarity=0.073 Sum_probs=40.5
Q ss_pred ceEEEe------cCCcEEEEecCCCCeeEE---c---ccCCcceeeEeeCCeEeeccceeecC
Q 016908 229 ERAYKY------RPVKVVEFERPRQQCVVY---L---DLKREECENLFPSGRVYSQAFHLGGQ 279 (380)
Q Consensus 229 ~~ly~~------~~~~~ve~ydp~~~~W~~---l---~~~r~~~~~~~~~g~IY~~~~viGG~ 279 (380)
+.||+. ...+.+++|||.+++|.. | |.+|..|++++.+++|| ++||.
T Consensus 229 ~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~~~~~iY----v~GG~ 287 (470)
T PLN02193 229 STLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAADEENVY----VFGGV 287 (470)
T ss_pred CEEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCCccceEEEEECCEEE----EECCC
Confidence 578882 236799999999999998 4 67899999999999999 99995
No 29
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=96.20 E-value=0.0062 Score=56.19 Aligned_cols=47 Identities=15% Similarity=0.224 Sum_probs=41.3
Q ss_pred ceEEEe-------cCCcEEEEecCCCCeeEE------cccCCcceeeEeeCCeEeeccceeecC
Q 016908 229 ERAYKY-------RPVKVVEFERPRQQCVVY------LDLKREECENLFPSGRVYSQAFHLGGQ 279 (380)
Q Consensus 229 ~~ly~~-------~~~~~ve~ydp~~~~W~~------l~~~r~~~~~~~~~g~IY~~~~viGG~ 279 (380)
+.+|+. +..+...+|||.++.|.. +|..|.+|++++.++.+| ++||+
T Consensus 89 d~~yvWGGRND~egaCN~Ly~fDp~t~~W~~p~v~G~vPgaRDGHsAcV~gn~My----iFGGy 148 (392)
T KOG4693|consen 89 DKAYVWGGRNDDEGACNLLYEFDPETNVWKKPEVEGFVPGARDGHSACVWGNQMY----IFGGY 148 (392)
T ss_pred ceEEEEcCccCcccccceeeeeccccccccccceeeecCCccCCceeeEECcEEE----EecCh
Confidence 667772 345788999999999987 899999999999999999 99995
No 30
>PF13964 Kelch_6: Kelch motif
Probab=96.15 E-value=0.0081 Score=41.09 Aligned_cols=29 Identities=17% Similarity=0.191 Sum_probs=23.3
Q ss_pred ceEEEe-------cCCcEEEEecCCCCeeEE---cccCC
Q 016908 229 ERAYKY-------RPVKVVEFERPRQQCVVY---LDLKR 257 (380)
Q Consensus 229 ~~ly~~-------~~~~~ve~ydp~~~~W~~---l~~~r 257 (380)
+.||+. ...+.+++|||.+++|.. ||.+|
T Consensus 12 ~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~mp~pR 50 (50)
T PF13964_consen 12 GKIYVFGGYDNSGKYSNDVERYDPETNTWEQLPPMPTPR 50 (50)
T ss_pred CEEEEECCCCCCCCccccEEEEcCCCCcEEECCCCCCCC
Confidence 678882 236799999999999999 66665
No 31
>cd03772 MATH_HAUSP Herpesvirus-associated ubiquitin-specific protease (HAUSP, also known as USP7) family, N-terminal MATH (TRAF-like) domain; composed of proteins similar to human HAUSP, an enzyme that specifically catalyzes the deubiquitylation of p53 and MDM2, hence playing an important role in the p53-MDM2 pathway. It contains an N-terminal TRAF-like domain and a C-terminal catalytic protease (C19 family) domain. The tumor suppressor p53 protein is a transcription factor that responds to many cellular stress signals and is regulated primarily through ubiquitylation and subsequent degradation. MDM2 is a RING-finger E3 ubiquitin ligase that promotes p53 ubiquitinylation. p53 and MDM2 bind to the same site in the N-terminal TRAF-like domain of HAUSP in a mutually exclusive manner. HAUSP also interacts with the Epstein-Barr nuclear antigen 1 (EBNA1) protein of the Epstein-Barr virus (EBV), which efficiently immortalizes infected cells predisposing the host to a variety of cancers. EBNA1
Probab=96.11 E-value=0.037 Score=46.50 Aligned_cols=111 Identities=14% Similarity=0.149 Sum_probs=65.8
Q ss_pred CCeEeeccceeecCCcccccccccCCC--CCceeeEEEEeeecc-C--ceeeEEeeeeeeccccc-cccccccceeEEee
Q 016908 266 SGRVYSQAFHLGGQGFFLSAHCNMDQQ--SSFHCFGLFLGMQEK-G--SVSFAVDYEFAARSKPT-EEFVSKYKGNYTFT 339 (380)
Q Consensus 266 ~g~IY~~~~viGG~~~~l~~~~~~~~~--~~~~~~g~~~~~~~~-~--~~~~~~~~~~~~r~~~~-~~~~~~~~~~~~~t 339 (380)
++.++|..|.+||..|.+.....-... ......++++..... . .-++.+.+.+-.-+... +....+. ..+.|.
T Consensus 16 ~e~~~S~~f~vgG~~W~i~~~P~g~~~~~~~~~~lsvyL~~~~~~~~~~w~i~a~~~~~l~~~~~~~~~~~~~-~~~~f~ 94 (137)
T cd03772 16 SESVLSPPCFVRNLPWKIMVMPRNYPDRNPHQKSVGFFLQCNAESDSTSWSCHAQAVLRIINYKDDEPSFSRR-ISHLFF 94 (137)
T ss_pred CCcEECCCEEECCcceEEEEEeCCCCCCCCCCCeEEEEEeeCCcCCCCCCeEEEEEEEEEEcCCCCcccEEEe-eeeEEc
Confidence 678999999999998876532111110 112345566654321 1 12355666555544321 2222222 224554
Q ss_pred -CCcccccccCCCCCCceeeeCCCceeecceeEEEeeeeec
Q 016908 340 -GGKAVGYRNLFAIPWTSFMADDSLYFINGILHLRAELTIR 379 (380)
Q Consensus 340 -g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 379 (380)
.+...|+.++ ++|..+.+.++.|-+||.+++++++||.
T Consensus 95 ~~~~~~G~~~f--i~~~~L~~~~sgyl~~D~l~Ie~~V~~~ 133 (137)
T cd03772 95 SKENDWGFSNF--MTWSEVTDPEKGFIEDDTITLEVYVQAD 133 (137)
T ss_pred CCCCCccchhe--eEHHHhcCCCCCcEECCEEEEEEEEEee
Confidence 2233455555 7788888778999999999999999984
No 32
>cd03774 MATH_SPOP Speckle-type POZ protein (SPOP) family, MATH domain; composed of proteins with similarity to human SPOP. SPOP was isolated as a novel antigen recognized by serum from a scleroderma patient, whose overexpression in COS cells results in a discrete speckled pattern in the nuclei. It contains an N-terminal MATH domain and a C-terminal BTB (also called POZ) domain. Together with Cul3, SPOP constitutes an ubiquitin E3 ligase which is able to ubiquitinate the PcG protein BMI1, the variant histone macroH2A1 and the death domain-associated protein Daxx. Therefore, SPOP may be involved in the regulation of these proteins and may play a role in transcriptional regulation, apoptosis and X-chromosome inactivation. Cul3 binds to the BTB domain of SPOP whereas Daxx and the macroH2A1 nonhistone region have been shown to bind to the MATH domain. Both MATH and BTB domains are necessary for the nuclear speckled accumulation of SPOP. There are many proteins, mostly uncharacterized, conta
Probab=96.02 E-value=0.027 Score=47.42 Aligned_cols=114 Identities=17% Similarity=0.252 Sum_probs=61.1
Q ss_pred eCCeEeeccceeecC---CcccccccccCCCCCceeeEEEEeeeccCceeeEEeeeeeecccccccccc-ccceeEEeeC
Q 016908 265 PSGRVYSQAFHLGGQ---GFFLSAHCNMDQQSSFHCFGLFLGMQEKGSVSFAVDYEFAARSKPTEEFVS-KYKGNYTFTG 340 (380)
Q Consensus 265 ~~g~IY~~~~viGG~---~~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~-~~~~~~~~tg 340 (380)
.+..++|..|.+||. .|.+.-.-+-........-.+++.+......++.+.+.+.+-+........ .....+.|.+
T Consensus 21 ~~~~i~S~~F~vgg~~~~~W~l~~yP~G~~~~~~~~iSlyL~l~~~~~~~v~a~f~~~l~n~~~~~~~~~~~~~~~~f~~ 100 (139)
T cd03774 21 MGEVIKSSTFSSGANDKLKWCLRVNPKGLDEESKDYLSLYLLLVSCPKSEVRAKFKFSILNAKGEETKAMESQRAYRFVQ 100 (139)
T ss_pred CCCEEECCCeecCCcCCceEEEEEeCCCCCCCCCCeEEEEEEEccCCCCcEEEEEEEEEEecCCCeeeeecccCcEeCCC
Confidence 356899999999995 676653211111111223445664432222356677777666653222111 1112344544
Q ss_pred CcccccccCCCCCCceeeeCCCceeecceeEEEeeeeecC
Q 016908 341 GKAVGYRNLFAIPWTSFMADDSLYFINGILHLRAELTIRH 380 (380)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 380 (380)
+..+||..+ ++.+.+....+.|.+||.|++++++||+.
T Consensus 101 ~~~wG~~~f--i~~~~L~~~~~g~l~dD~l~I~c~I~V~~ 138 (139)
T cd03774 101 GKDWGFKKF--IRRDFLLDEANGLLPDDKLTLFCEVSVVQ 138 (139)
T ss_pred CCccCHHHe--eeHHHhhhhhcccccCCEEEEEEEEEEEc
Confidence 333444332 33444443456688999999999999963
No 33
>PLN02193 nitrile-specifier protein
Probab=95.73 E-value=0.016 Score=59.11 Aligned_cols=48 Identities=17% Similarity=0.209 Sum_probs=40.0
Q ss_pred ceEEE-ec----CCcEEEEecCCCCeeEEc------ccCCcceeeEeeCCeEeeccceeecCC
Q 016908 229 ERAYK-YR----PVKVVEFERPRQQCVVYL------DLKREECENLFPSGRVYSQAFHLGGQG 280 (380)
Q Consensus 229 ~~ly~-~~----~~~~ve~ydp~~~~W~~l------~~~r~~~~~~~~~g~IY~~~~viGG~~ 280 (380)
+.+|+ ++ ..+.+++|||.+++|+.+ |.+|..|++++++++|| ++||..
T Consensus 329 gkiyviGG~~g~~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~~~~~~~iy----v~GG~~ 387 (470)
T PLN02193 329 GKVWVVYGFNGCEVDDVHYYDPVQDKWTQVETFGVRPSERSVFASAAVGKHIV----IFGGEI 387 (470)
T ss_pred CcEEEEECCCCCccCceEEEECCCCEEEEeccCCCCCCCcceeEEEEECCEEE----EECCcc
Confidence 45676 22 257899999999999983 67899999999999999 999964
No 34
>PF13854 Kelch_5: Kelch motif
Probab=95.53 E-value=0.014 Score=38.57 Aligned_cols=24 Identities=17% Similarity=0.321 Sum_probs=22.3
Q ss_pred cccCCcceeeEeeCCeEeeccceeecCC
Q 016908 253 LDLKREECENLFPSGRVYSQAFHLGGQG 280 (380)
Q Consensus 253 l~~~r~~~~~~~~~g~IY~~~~viGG~~ 280 (380)
+|.+|.+|++++.+++|| +.||..
T Consensus 1 ~P~~R~~hs~~~~~~~iy----i~GG~~ 24 (42)
T PF13854_consen 1 IPSPRYGHSAVVVGNNIY----IFGGYS 24 (42)
T ss_pred CCCCccceEEEEECCEEE----EEcCcc
Confidence 588999999999999999 999976
No 35
>PF13964 Kelch_6: Kelch motif
Probab=95.35 E-value=0.022 Score=38.92 Aligned_cols=21 Identities=24% Similarity=0.501 Sum_probs=19.4
Q ss_pred CCcceeeEeeCCeEeeccceeecCC
Q 016908 256 KREECENLFPSGRVYSQAFHLGGQG 280 (380)
Q Consensus 256 ~r~~~~~~~~~g~IY~~~~viGG~~ 280 (380)
||.+|++++++|+|| ++||..
T Consensus 1 pR~~~s~v~~~~~iy----v~GG~~ 21 (50)
T PF13964_consen 1 PRYGHSAVVVGGKIY----VFGGYD 21 (50)
T ss_pred CCccCEEEEECCEEE----EECCCC
Confidence 689999999999999 999974
No 36
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=95.28 E-value=0.031 Score=38.07 Aligned_cols=28 Identities=11% Similarity=-0.122 Sum_probs=25.4
Q ss_pred CcEEEEecCCCCeeEE---cccCCcceeeEe
Q 016908 237 VKVVEFERPRQQCVVY---LDLKREECENLF 264 (380)
Q Consensus 237 ~~~ve~ydp~~~~W~~---l~~~r~~~~~~~ 264 (380)
.+.+..||+.+++|+. +|.+|..|++++
T Consensus 18 ~nd~~~~~~~~~~W~~~~~~P~~R~~h~~~~ 48 (49)
T PF13415_consen 18 LNDVWVFDLDTNTWTRIGDLPPPRSGHTATV 48 (49)
T ss_pred ecCEEEEECCCCEEEECCCCCCCccceEEEE
Confidence 5689999999999999 889999999886
No 37
>PF02214 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. The Kv family can be divided into several subfamilies on the basis of sequence similarity and function. Four of these subfamilies, Kv1 (Shaker), Kv2 (Shab), Kv3 (Shaw) and Kv4 (Shal), consist of pore-forming alpha subunits that associate with different types of beta subunit. Each alpha subunit comprises six hydrophobic TM domains with a P-domain between the fifth and sixth, which partially resides in the membrane. The fourth TM domain has positively charged residues at every third residue and acts as a voltage sensor, which triggers the conformational change that opens the channel pore in response to a displacement in membrane potential []. More recently, 4 new electrically-silent alpha subunits have been cloned: Kv5 (KCNF), Kv6 (KCNG), Kv8 and Kv9 (KCNS). These subunits do not themselves possess any functional activity, but appear to form heteromeric channels with Kv2 subunits, and thus modulate Shab channel activity []. When highly expressed, they inhibit channel activity, but at lower levels show more specific modulatory actions. The N-terminal, cytoplasmic tetramerization domain (T1) of voltage-gated potassium channels encodes molecular determinants for subfamily-specific assembly of alpha-subunits into functional tetrameric channels []. This domain is found in a subset of a larger group of proteins that contain the BTB/POZ domain.; GO: 0005249 voltage-gated potassium channel activity, 0006813 potassium ion transport, 0008076 voltage-gated potassium channel complex, 0016020 membrane; PDB: 1NN7_A 3KVT_A 1EXB_E 1QDV_A 1DSX_E 1QDW_F 3LUT_B 3LNM_B 2A79_B 3DRY_C ....
Probab=95.19 E-value=0.035 Score=43.33 Aligned_cols=53 Identities=13% Similarity=0.291 Sum_probs=39.0
Q ss_pred CcceEEEecCCCCHHHHHHHhHhHhc-CceecCCcchHHHHHHHHHHhchHhH-HHHH
Q 016908 5 EQRHVALRINASEEAALMELLNFMYS-NTLSTTAAPALLDVLMAADKFEVASC-MRYC 60 (380)
Q Consensus 5 ~~~~V~L~~~~v~~~~f~~lL~fiYt-g~i~i~~~~~v~~ll~aA~~lqi~~l-~~~C 60 (380)
.+.++-| +-+|..|+.||+|+.+ |.+.......+..+++-|.+|+++.+ ++.|
T Consensus 40 ~~~~~fi---DRdp~~F~~IL~ylr~~~~l~~~~~~~~~~l~~Ea~fy~l~~l~i~~c 94 (94)
T PF02214_consen 40 DDGEYFI---DRDPELFEYILNYLRTGGKLPIPDEICLEELLEEAEFYGLDELFIEDC 94 (94)
T ss_dssp TTTEEEE---SS-HHHHHHHHHHHHHTSSB---TTS-HHHHHHHHHHHT-HHHHBHHC
T ss_pred ccceEEe---ccChhhhhHHHHHHhhcCccCCCCchhHHHHHHHHHHcCCCccccCCC
Confidence 3456666 6799999999999999 67776433678999999999999999 7776
No 38
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=94.87 E-value=0.023 Score=38.02 Aligned_cols=21 Identities=19% Similarity=0.458 Sum_probs=18.8
Q ss_pred CCcceeeEeeCCeEeeccceeecCC
Q 016908 256 KREECENLFPSGRVYSQAFHLGGQG 280 (380)
Q Consensus 256 ~r~~~~~~~~~g~IY~~~~viGG~~ 280 (380)
||.+|++++++++|| ++||..
T Consensus 1 pR~~~~~~~~~~~iy----v~GG~~ 21 (47)
T PF01344_consen 1 PRSGHAAVVVGNKIY----VIGGYD 21 (47)
T ss_dssp -BBSEEEEEETTEEE----EEEEBE
T ss_pred CCccCEEEEECCEEE----EEeeec
Confidence 689999999999999 999974
No 39
>cd00121 MATH MATH (meprin and TRAF-C homology) domain; an independent folding unit with an eight-stranded beta-sandwich structure found in meprins, TRAFs and other proteins. Meprins comprise a class of extracellular metalloproteases which are anchored to the membrane and are capable of cleaving growth factors, extracellular matrix proteins, and biologically active peptides. TRAF molecules serve as adapter proteins that link cell surface receptors of the Tumor Necrosis Factor and 1nterleukin-1/Toll-like families to downstream kinase cascades, which results in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses in the immune and inflammatory systems. Other members include the ubiquitin ligases, TRIM37 and SPOP, and the ubiquitin-specific proteases, HAUSP and Ubp21p. A large number of uncharacterized members mostly from lineage-specific expansions in C. elegans and rice contain MATH and BTB domains, similar to SPOP. The MATH doma
Probab=94.56 E-value=0.12 Score=41.50 Aligned_cols=108 Identities=19% Similarity=0.334 Sum_probs=64.8
Q ss_pred eCCeEeeccceeecCCcccccccccCCCCCceeeEEEEeeeccC----ceeeEEeeeeeeccccccccccccceeEEe-e
Q 016908 265 PSGRVYSQAFHLGGQGFFLSAHCNMDQQSSFHCFGLFLGMQEKG----SVSFAVDYEFAARSKPTEEFVSKYKGNYTF-T 339 (380)
Q Consensus 265 ~~g~IY~~~~viGG~~~~l~~~~~~~~~~~~~~~g~~~~~~~~~----~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~-t 339 (380)
.++.++|..|..||..|.+.....-... .....++++...... ..++.+++.+.+.+...+.-..+....... .
T Consensus 14 ~~~~~~S~~f~~~g~~W~l~~~p~~~~~-~~~~lsv~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 92 (126)
T cd00121 14 EGESIYSPPFEVGGYKWRIRIYPNGDGE-SGDYLSLYLELDKGESDLEKWSVRAEFTLKLVNQNGGKSLSKSFTHVFFSE 92 (126)
T ss_pred CCcEEECCCEEEcCEeEEEEEEcCCCCC-CCCEEEEEEEecCCCCCCCCCcEEEEEEEEEECCCCCccceEeccCCcCCC
Confidence 5678999999999998887654332222 244667777554322 235777777777665433333333333222 2
Q ss_pred CCcccccccCCCCCCceeeeCCCceeecceeEEEeeee
Q 016908 340 GGKAVGYRNLFAIPWTSFMADDSLYFINGILHLRAELT 377 (380)
Q Consensus 340 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 377 (380)
.+.+.|+.+. ++|..+..... .+||.|.++++++
T Consensus 93 ~~~~~G~~~f--i~~~~l~~~~~--~~~d~l~i~~~v~ 126 (126)
T cd00121 93 KGSGWGFPKF--ISWDDLEDSYY--LVDDSLTIEVEVK 126 (126)
T ss_pred CCCCCChHHe--eEHHHhccCCc--EECCEEEEEEEEC
Confidence 3334455433 66666665332 7999999999863
No 40
>KOG2716 consensus Polymerase delta-interacting protein PDIP1 and related proteins, contain BTB/POZ domain [Inorganic ion transport and metabolism]
Probab=94.40 E-value=0.1 Score=47.72 Aligned_cols=56 Identities=14% Similarity=0.298 Sum_probs=48.0
Q ss_pred eEEEecCCCCHHHHHHHhHhHhcCceecCCc-chHHHHHHHHHHhchHhHHHHHHHHhhc
Q 016908 8 HVALRINASEEAALMELLNFMYSNTLSTTAA-PALLDVLMAADKFEVASCMRYCSRLLRN 66 (380)
Q Consensus 8 ~V~L~~~~v~~~~f~~lL~fiYtg~i~i~~~-~~v~~ll~aA~~lqi~~l~~~C~~fL~~ 66 (380)
.|-| +=+|.-|..||+||..|.+.+.+. ..+.+|+.-|.+|++++|++.|..-+..
T Consensus 47 ~IFI---DRSpKHF~~ILNfmRdGdv~LPe~~kel~El~~EA~fYlL~~Lv~~C~~~i~~ 103 (230)
T KOG2716|consen 47 CIFI---DRSPKHFDTILNFMRDGDVDLPESEKELKELLREAEFYLLDGLVELCQSAIAR 103 (230)
T ss_pred cEEe---cCChhHHHHHHHhhhcccccCccchHHHHHHHHHHHHhhHHHHHHHHHHHhhh
Confidence 3555 579999999999999999987431 5678999999999999999999997776
No 41
>cd03775 MATH_Ubp21p Ubiquitin-specific protease 21 (Ubp21p) family, MATH domain; composed of fungal proteins with similarity to Ubp21p of fission yeast. Ubp21p is a deubiquitinating enzyme that may be involved in the regulation of the protein kinase Prp4p, which controls the formation of active spliceosomes. Members of this family are similar to human HAUSP (Herpesvirus-associated ubiquitin-specific protease) in that they contain an N-terminal MATH domain and a C-terminal catalytic protease (C19 family) domain. HAUSP is also an ubiquitin-specific protease that specifically catalyzes the deubiquitylation of p53 and MDM2. The MATH domain of HAUSP contains the binding site for p53 and MDM2. Similarly, the MATH domain of members in this family may be involved in substrate binding.
Probab=94.15 E-value=0.29 Score=40.88 Aligned_cols=106 Identities=16% Similarity=0.227 Sum_probs=58.2
Q ss_pred CCeEeeccceeecCCcccccccccCCCCCceeeEEEEeeeccC--------ceeeEEeeeeeeccccccc-cccccceeE
Q 016908 266 SGRVYSQAFHLGGQGFFLSAHCNMDQQSSFHCFGLFLGMQEKG--------SVSFAVDYEFAARSKPTEE-FVSKYKGNY 336 (380)
Q Consensus 266 ~g~IY~~~~viGG~~~~l~~~~~~~~~~~~~~~g~~~~~~~~~--------~~~~~~~~~~~~r~~~~~~-~~~~~~~~~ 336 (380)
++.++|..|.+||..|.+....+-+.. .-...+++.+.... .-++.+.+.+.+-+..... -.. ....+
T Consensus 14 ~~~~~S~~F~vGG~~W~l~~yP~G~~~--~~~iSlyL~l~~~~~~~~~~~~~~~v~a~f~~~l~n~~~~~~~~~-~~~~~ 90 (134)
T cd03775 14 EKKVHSPKFKCGGFEWRILLFPQGNSQ--TGGVSIYLEPHPEEEEKAPLDEDWSVCAQFALVISNPGDPSIQLS-NVAHH 90 (134)
T ss_pred CcceeCCCEEECCeeEEEEEeCCCCCC--CCeEEEEEEecCcccccccCCCCCeEEEEEEEEEEcCCCCccceE-cccee
Confidence 678999999999999987644322221 22355666443211 1125666666665532111 111 13356
Q ss_pred Eee-CCcccccccCCCCCCceee----eCCCceeecceeEEEeee
Q 016908 337 TFT-GGKAVGYRNLFAIPWTSFM----ADDSLYFINGILHLRAEL 376 (380)
Q Consensus 337 ~~t-g~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~l~~~~ 376 (380)
.|. .+.+.|+..+ ++.+.+- ..++.|-+||.|++.+++
T Consensus 91 ~F~~~~~~wG~~~f--i~~~~L~~~~~~~~~g~l~nD~l~I~~~~ 133 (134)
T cd03775 91 RFNAEDKDWGFTRF--IELRKLAHRTPDKPSPFLENGELNITVYV 133 (134)
T ss_pred EeCCCCCCCChhHc--ccHHHHcccccCCCCceeECCEEEEEEEE
Confidence 665 2334455443 3344333 235778899988888765
No 42
>PF00917 MATH: MATH domain; InterPro: IPR002083 Although apparently functionally unrelated, intracellular TRAFs and extracellular meprins share a conserved region of about 180 residues, the meprin and TRAF homology (MATH) domain []. Meprins are mammalian tissue-specific metalloendopeptidases of the astacin family implicated in developmental, normal and pathological processes by hydrolysing a variety of proteins. Various growth factors, cytokines, and extracellular matrix proteins are substrates for meprins. They are composed of five structural domains: an N-terminal endopeptidase domain, a MAM domain (see PDOC00604 from PROSITEDOC), a MATH domain, an EGF-like domain (see PDOC00021 from PROSITEDOC) and a C-terminal transmembrane region. Meprin A and B form membrane bound homotetramer whereas homooligomers of meprin A are secreted. A proteolitic site adjacent to the MATH domain, only present in meprin A, allows the release of the protein from the membrane []. TRAF proteins were first isolated by their ability to interact with TNF receptors []. They promote cell survival by the activation of downstream protein kinases and, finally, transcription factors of the NF-kB and AP-1 family. The TRAF proteins are composed of 3 structural domains: a RING finger (see PDOC00449 from PROSITEDOC) in the N-terminal part of the protein, one to seven TRAF zinc fingers (see PDOC50145 from PROSITEDOC) in the middle and the MATH domain in the C-terminal part []. The MATH domain is necessary and sufficient for self-association and receptor interaction. From the structural analysis two consensus sequence recognised by the TRAF domain have been defined: a major one, [PSAT]x[QE]E and a minor one, PxQxxD []. The structure of the TRAF2 protein reveals a trimeric self-association of the MATH domain []. The domain forms a new, light-stranded antiparallel beta sandwich structure. A coiled-coil region adjacent to the MATH domain is also important for the trimerisation. The oligomerisation is essential for establishing appropriate connections to form signalling complexes with TNF receptor-1. The ligand binding surface of TRAF proteins is located in beta-strands 6 and 7 [].; GO: 0005515 protein binding; PDB: 1D00_E 1CZY_A 1D01_F 1CA9_A 1D0J_D 1F3V_B 1CA4_C 1D0A_A 1QSC_C 1CZZ_C ....
Probab=93.89 E-value=0.075 Score=42.73 Aligned_cols=98 Identities=16% Similarity=0.314 Sum_probs=60.7
Q ss_pred ccceeecCCcccccccccCCCCCceeeEEEEeeecc-----CceeeEEeeeeeeccccccccccccceeEEeeCCccccc
Q 016908 272 QAFHLGGQGFFLSAHCNMDQQSSFHCFGLFLGMQEK-----GSVSFAVDYEFAARSKPTEEFVSKYKGNYTFTGGKAVGY 346 (380)
Q Consensus 272 ~~~viGG~~~~l~~~~~~~~~~~~~~~g~~~~~~~~-----~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~tg~~~~~~ 346 (380)
..+..||..|.+.....-+ ....++++.+... +.-++.+++.+-+-+..... .......+.|++..+.|+
T Consensus 17 ~~~~~~g~~W~l~~~~~~~----~~~l~~~L~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~-~~~~~~~~~F~~~~~~g~ 91 (119)
T PF00917_consen 17 FVFSHGGYPWRLKVYPKGN----GKYLSVYLHCDKGENDSDLEWSIEAEFRFRLLNQNGKS-ISKRIKSHSFNNPSSWGW 91 (119)
T ss_dssp EESSTTSEEEEEEEETTES----TTEEEEEEEEECSTTGGGSSSSEEEEEEEEEE-TTSCE-EEEEEECEEECTTSEEEE
T ss_pred CeEEECCEEEEEEEEeCCC----cCcEEEEEEEeecccccccceeeeEEEEEEEecCCCCc-ceeeeeeeEEeeecccch
Confidence 5668899988877441111 2245556544322 23446666666665433233 334444788887766666
Q ss_pred ccCCCCCCceeeeCCCceeecceeEEEeeeee
Q 016908 347 RNLFAIPWTSFMADDSLYFINGILHLRAELTI 378 (380)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 378 (380)
.++ +.|..+.... |.+||.+.+.++.+|
T Consensus 92 ~~f--i~~~~l~~~~--fl~dd~l~ie~~v~I 119 (119)
T PF00917_consen 92 SSF--ISWEDLEDPY--FLVDDSLTIEVEVKI 119 (119)
T ss_dssp EEE--EEHHHHTTCT--TSBTTEEEEEEEEEE
T ss_pred hhe--eEHHHhCccC--CeECCEEEEEEEEEC
Confidence 553 6676666655 899999999999986
No 43
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=93.88 E-value=0.079 Score=49.13 Aligned_cols=47 Identities=17% Similarity=0.246 Sum_probs=40.2
Q ss_pred ceEEE--------ecCCcEEEEecCCCCeeEE------cccCCcceeeEeeCCeEeeccceeecC
Q 016908 229 ERAYK--------YRPVKVVEFERPRQQCVVY------LDLKREECENLFPSGRVYSQAFHLGGQ 279 (380)
Q Consensus 229 ~~ly~--------~~~~~~ve~ydp~~~~W~~------l~~~r~~~~~~~~~g~IY~~~~viGG~ 279 (380)
+.+|+ ....+...+|||++..|.. -|.+|...++++.++++| .+||.
T Consensus 251 g~~Y~FGGYng~ln~HfndLy~FdP~t~~W~~I~~~Gk~P~aRRRqC~~v~g~kv~----LFGGT 311 (392)
T KOG4693|consen 251 GKMYMFGGYNGTLNVHFNDLYCFDPKTSMWSVISVRGKYPSARRRQCSVVSGGKVY----LFGGT 311 (392)
T ss_pred ceEEEecccchhhhhhhcceeecccccchheeeeccCCCCCcccceeEEEECCEEE----EecCC
Confidence 66777 2346789999999999998 577888889999999999 99995
No 44
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=93.73 E-value=0.076 Score=35.43 Aligned_cols=26 Identities=23% Similarity=0.319 Sum_probs=20.7
Q ss_pred ceEEE-------ecCCcEEEEecCCCCeeEEcc
Q 016908 229 ERAYK-------YRPVKVVEFERPRQQCVVYLD 254 (380)
Q Consensus 229 ~~ly~-------~~~~~~ve~ydp~~~~W~~l~ 254 (380)
+.||+ ...+++|++|||.+++|..++
T Consensus 12 ~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~ 44 (47)
T PF01344_consen 12 NKIYVIGGYDGNNQPTNSVEVYDPETNTWEELP 44 (47)
T ss_dssp TEEEEEEEBESTSSBEEEEEEEETTTTEEEEEE
T ss_pred CEEEEEeeecccCceeeeEEEEeCCCCEEEEcC
Confidence 67787 134679999999999999843
No 45
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=93.60 E-value=0.064 Score=36.45 Aligned_cols=20 Identities=25% Similarity=0.517 Sum_probs=19.0
Q ss_pred CCcceeeEeeCCeEeeccceeecC
Q 016908 256 KREECENLFPSGRVYSQAFHLGGQ 279 (380)
Q Consensus 256 ~r~~~~~~~~~g~IY~~~~viGG~ 279 (380)
||..|++++++++|| ++||.
T Consensus 1 ~r~~hs~~~~~~kiy----v~GG~ 20 (49)
T PF07646_consen 1 PRYGHSAVVLDGKIY----VFGGY 20 (49)
T ss_pred CccceEEEEECCEEE----EECCc
Confidence 688999999999999 99998
No 46
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=93.44 E-value=0.089 Score=53.91 Aligned_cols=40 Identities=10% Similarity=0.053 Sum_probs=36.8
Q ss_pred CcEEEEecCCCCeeEE------cccCCcceeeEeeCCeEeeccceeecCC
Q 016908 237 VKVVEFERPRQQCVVY------LDLKREECENLFPSGRVYSQAFHLGGQG 280 (380)
Q Consensus 237 ~~~ve~ydp~~~~W~~------l~~~r~~~~~~~~~g~IY~~~~viGG~~ 280 (380)
.+.+.+||+.+++|.. .|.+|.+|++++.+++|| +.||.+
T Consensus 138 ~~~l~~~d~~t~~W~~l~~~~~~P~~r~~Hs~~~~g~~l~----vfGG~~ 183 (482)
T KOG0379|consen 138 LNELHSLDLSTRTWSLLSPTGDPPPPRAGHSATVVGTKLV----VFGGIG 183 (482)
T ss_pred hhheEeccCCCCcEEEecCcCCCCCCcccceEEEECCEEE----EECCcc
Confidence 4589999999999999 588999999999999999 999964
No 47
>cd03773 MATH_TRIM37 Tripartite motif containing protein 37 (TRIM37) family, MATH domain; TRIM37 is a peroxisomal protein and is a member of the tripartite motif (TRIM) protein subfamily, also known as the RING-B-box-coiled-coil (RBCC) subfamily of zinc-finger proteins. Mutations in the human TRIM37 gene (also known as MUL) cause Mulibrey (muscle-liver-brain-eye) nanism, a rare growth disorder of prenatal onset characterized by dysmorphic features, pericardial constriction and hepatomegaly. TRIM37, similar to other TRIMs, contains a cysteine-rich, zinc-binding RING-finger domain followed by another cysteine-rich zinc-binding domain, the B-box, and a coiled-coil domain. TRIM37 is autoubiquitinated in a RING domain-dependent manner, indicating that it functions as an ubiquitin E3 ligase. In addition to the tripartite motif, TRIM37 also contains a MATH domain C-terminal to the coiled-coil domain. The MATH domain of TRIM37 has been shown to interact with the TRAF domain of six known TRAFs i
Probab=93.41 E-value=0.27 Score=40.76 Aligned_cols=105 Identities=17% Similarity=0.266 Sum_probs=55.0
Q ss_pred CCeEeeccceeecCCcccccccccCCCCCceeeEEEEeeeccCceeeEEeeeeeeccc--cccccccccceeEEeeCCcc
Q 016908 266 SGRVYSQAFHLGGQGFFLSAHCNMDQQSSFHCFGLFLGMQEKGSVSFAVDYEFAARSK--PTEEFVSKYKGNYTFTGGKA 343 (380)
Q Consensus 266 ~g~IY~~~~viGG~~~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~r~~--~~~~~~~~~~~~~~~tg~~~ 343 (380)
+..++|..|.+||+.|.+....+-+.......-++++.+......++..++.+-.-+. ++ .... ....+.|.++.+
T Consensus 21 ~~~~~S~~F~vgG~~W~i~~yP~G~~~~~~~~lSl~L~l~~~~~~~~~~~~~l~llnq~~~~-~~~~-~~~~~~f~~~~~ 98 (132)
T cd03773 21 ADPVYSDPLNVDGLCWRLKVYPDGNGEVRGNFLSVFLELCSGLGEASKYEYRVEMVHQANPT-KNIK-REFASDFEVGEC 98 (132)
T ss_pred CcceeCCCeEeCCccEEEEEECCCCCCCCCCEEEEEEEeecCCCCceeEEEEEEEEcCCCCc-cceE-EeccccccCCCC
Confidence 4689999999999999876543322221223455666543322234455544433332 22 2222 222344554444
Q ss_pred cccccCCCCCCceeeeCCCceeec--ceeEEEeee
Q 016908 344 VGYRNLFAIPWTSFMADDSLYFIN--GILHLRAEL 376 (380)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~ 376 (380)
.|+.++ ++.+.+. ++.|-.| +.|++|.++
T Consensus 99 wG~~~F--i~~~~L~--~~gfl~~~~D~l~i~~~v 129 (132)
T cd03773 99 WGYNRF--FRLDLLI--NEGYLLPENDTLILRFSV 129 (132)
T ss_pred cCHHHh--ccHHHHh--hCCCcCCCCCEEEEEEEE
Confidence 555443 3333332 3457777 888888765
No 48
>KOG1724 consensus SCF ubiquitin ligase, Skp1 component [Posttranslational modification, protein turnover, chaperones]
Probab=92.87 E-value=0.18 Score=43.70 Aligned_cols=56 Identities=13% Similarity=0.281 Sum_probs=45.7
Q ss_pred eEEEecCCCCHHHHHHHhHhHhcCce-------------------------ecCCcchHHHHHHHHHHhchHhHHHHHHH
Q 016908 8 HVALRINASEEAALMELLNFMYSNTL-------------------------STTAAPALLDVLMAADKFEVASCMRYCSR 62 (380)
Q Consensus 8 ~V~L~~~~v~~~~f~~lL~fiYtg~i-------------------------~i~~~~~v~~ll~aA~~lqi~~l~~~C~~ 62 (380)
.|-|+ .|++.+|..+|+|++.-+- .+.. +++.++..||++|.|+.|.+.||+
T Consensus 45 ~IPl~--nV~~~iL~kVIewC~~Hk~d~~~~~~~~~~~~~~~i~~WD~~Flk~d~-~tLfdli~AAnyLdi~gLl~~~ck 121 (162)
T KOG1724|consen 45 PIPLP--NVTSKILKKVIEWCKKHKDDDPANPEDKELPEETDIPEWDAEFLKVDQ-GTLFDLILAANYLDIKGLLDLTCK 121 (162)
T ss_pred ccccC--ccCHHHHHHHHHHHHHcccccccccccccccccCCccHHHHHHHhcCH-HHHHHHHHHhhhcccHHHHHHHHH
Confidence 35555 8999999999999987331 1222 478999999999999999999999
Q ss_pred Hhhc
Q 016908 63 LLRN 66 (380)
Q Consensus 63 fL~~ 66 (380)
.+.+
T Consensus 122 ~va~ 125 (162)
T KOG1724|consen 122 TVAN 125 (162)
T ss_pred HHHH
Confidence 8887
No 49
>KOG1665 consensus AFH1-interacting protein FIP2, contains BTB/POZ domain and pentapeptide repeats [General function prediction only]
Probab=92.64 E-value=0.28 Score=44.30 Aligned_cols=57 Identities=18% Similarity=0.222 Sum_probs=46.5
Q ss_pred CCCcceEEEecCCCCHHHHHHHhHhHhcCceecCCcchHHHHHHHHHHhchHhHHHHHHH
Q 016908 3 ESEQRHVALRINASEEAALMELLNFMYSNTLSTTAAPALLDVLMAADKFEVASCMRYCSR 62 (380)
Q Consensus 3 Es~~~~V~L~~~~v~~~~f~~lL~fiYtg~i~i~~~~~v~~ll~aA~~lqi~~l~~~C~~ 62 (380)
|+.+.-+-| +-+|.-|+-||+|+..|++.....-++..+|+.|+||||-+|++.-.+
T Consensus 49 ~d~kGa~lI---DRsp~yFepIlNyLr~Gq~~~~s~i~~lgvLeeArff~i~sL~~hle~ 105 (302)
T KOG1665|consen 49 EDKKGAVLI---DRSPKYFEPILNYLRDGQIPSLSDIDCLGVLEEARFFQILSLKDHLED 105 (302)
T ss_pred cccCceEEE---ccCchhhHHHHHHHhcCceeecCCccHHHHHHHhhHHhhHhHHhHHhh
Confidence 344445555 679999999999999999876543689999999999999999976655
No 50
>PF01466 Skp1: Skp1 family, dimerisation domain; InterPro: IPR016072 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a dimerisation domain found at the C-terminal of SKP1 proteins [], as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. This domain is multi-helical in structure, and consists of an interlocked herterodimer in F-box proteins.; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 2P1O_A 3OGL_G 3OGM_A 3C6O_A 2P1N_A 2P1Q_A 3OGK_I 3C6N_A 3C6P_A 2P1P_A ....
Probab=92.22 E-value=0.12 Score=38.98 Aligned_cols=31 Identities=23% Similarity=0.515 Sum_probs=27.1
Q ss_pred chHHHHHHHHHHhchHhHHHHHHHHhhcCCCC
Q 016908 39 PALLDVLMAADKFEVASCMRYCSRLLRNMPMT 70 (380)
Q Consensus 39 ~~v~~ll~aA~~lqi~~l~~~C~~fL~~~~l~ 70 (380)
+.+.+|+.||++|+|+.|.+.|++.+.. .+.
T Consensus 14 ~~L~~l~~AA~yL~I~~L~~~~~~~iA~-~i~ 44 (78)
T PF01466_consen 14 DELFDLLNAANYLDIKGLLDLCCKYIAN-MIK 44 (78)
T ss_dssp HHHHHHHHHHHHHT-HHHHHHHHHHHHH-HHT
T ss_pred HHHHHHHHHHHHHcchHHHHHHHHHHHH-Hhc
Confidence 7899999999999999999999999988 453
No 51
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=91.86 E-value=0.24 Score=50.78 Aligned_cols=48 Identities=6% Similarity=0.044 Sum_probs=41.1
Q ss_pred ceEEEe-------cCCcEEEEecCCCCeeEE------cccCCcceeeEeeCCeEeeccceeecCC
Q 016908 229 ERAYKY-------RPVKVVEFERPRQQCVVY------LDLKREECENLFPSGRVYSQAFHLGGQG 280 (380)
Q Consensus 229 ~~ly~~-------~~~~~ve~ydp~~~~W~~------l~~~r~~~~~~~~~g~IY~~~~viGG~~ 280 (380)
+.+|+. ...+.+..||+.+++|.. .|.||..|++++.++++| ++||..
T Consensus 174 ~~l~vfGG~~~~~~~~ndl~i~d~~~~~W~~~~~~g~~P~pR~gH~~~~~~~~~~----v~gG~~ 234 (482)
T KOG0379|consen 174 TKLVVFGGIGGTGDSLNDLHIYDLETSTWSELDTQGEAPSPRYGHAMVVVGNKLL----VFGGGD 234 (482)
T ss_pred CEEEEECCccCcccceeeeeeeccccccceecccCCCCCCCCCCceEEEECCeEE----EEeccc
Confidence 567772 136799999999999999 578999999999999999 999954
No 52
>PLN02772 guanylate kinase
Probab=91.81 E-value=0.3 Score=48.31 Aligned_cols=46 Identities=9% Similarity=-0.030 Sum_probs=38.9
Q ss_pred ceEEEec-------CCcEEEEecCCCCeeEE------cccCCcceeeEee-CCeEeeccceeec
Q 016908 229 ERAYKYR-------PVKVVEFERPRQQCVVY------LDLKREECENLFP-SGRVYSQAFHLGG 278 (380)
Q Consensus 229 ~~ly~~~-------~~~~ve~ydp~~~~W~~------l~~~r~~~~~~~~-~g~IY~~~~viGG 278 (380)
+.+|+.+ ..+.+.+||+.+++|.. -|.+|.+|+++++ +++|+ +++|
T Consensus 35 dk~yv~GG~~d~~~~~~~v~i~D~~t~~W~~P~V~G~~P~~r~GhSa~v~~~~ril----v~~~ 94 (398)
T PLN02772 35 DKTYVIGGNHEGNTLSIGVQILDKITNNWVSPIVLGTGPKPCKGYSAVVLNKDRIL----VIKK 94 (398)
T ss_pred CEEEEEcccCCCccccceEEEEECCCCcEecccccCCCCCCCCcceEEEECCceEE----EEeC
Confidence 6788821 35689999999999998 5889999999988 68999 9997
No 53
>KOG0511 consensus Ankyrin repeat protein [General function prediction only]
Probab=91.66 E-value=0.29 Score=47.49 Aligned_cols=106 Identities=17% Similarity=0.052 Sum_probs=77.7
Q ss_pred cceEEEecCCCCHHHHHHHhHhHhcCceecCCcchHHHHHHHHHHhchHh---HHHHHHHHhhcCC---CChHhHHHHHH
Q 016908 6 QRHVALRINASEEAALMELLNFMYSNTLSTTAAPALLDVLMAADKFEVAS---CMRYCSRLLRNMP---MTPESALLYLE 79 (380)
Q Consensus 6 ~~~V~L~~~~v~~~~f~~lL~fiYtg~i~i~~~~~v~~ll~aA~~lqi~~---l~~~C~~fL~~~~---l~~~Ncl~i~~ 79 (380)
+....+.++.....+.+.+++|+|+.+..+-. +-..+++-.|+++-+.. |+.+-.--+.+ . ++.=|.+.|+.
T Consensus 331 ~~~p~lslp~~~~~vveI~lr~lY~d~tdi~~-~~A~dvll~ad~lal~~dr~Lkt~as~~itq-~~e~id~y~V~dIl~ 408 (516)
T KOG0511|consen 331 DTRPGLSLPSLADVVVEIDLRNLYCDQTDIIF-DVASDVLLFADKLALADDRLLKTAASAEITQ-WLELIDMYGVLDILE 408 (516)
T ss_pred ccccccccchHHHHHHHHHHHHhhcccccchH-HHHhhHHHHhhHhhhhhhhhhhhhhhHHHHH-HHHHHHhhhHHHHHH
Confidence 34445555577888999999999999999975 88999999999997752 44443333333 2 34446677776
Q ss_pred hccccccccchHHHHHHHHHHHhcccccccccchhhccc
Q 016908 80 LPSSVLMGEAVQPLTDAARQYLASRYKDMTKFQDEVMAL 118 (380)
Q Consensus 80 ~a~~~~~~~~~~~L~~~a~~fi~~~f~~v~~~~~efl~L 118 (380)
.+.- -+...|...|..|++.|...+.. .+|+..+
T Consensus 409 ~~wd----~~~~rlEqfa~~~~a~hl~~l~~-dPe~~~~ 442 (516)
T KOG0511|consen 409 YCWD----LVACRLEQFAETHEARHLLLLLP-DPEGDSS 442 (516)
T ss_pred HHHH----hhhHHHHHHHHHHHHHHHHHhcC-CchhhHH
Confidence 6542 25788999999999999999988 7888654
No 54
>KOG3473 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin C [Transcription]
Probab=90.54 E-value=0.43 Score=37.28 Aligned_cols=48 Identities=27% Similarity=0.454 Sum_probs=39.4
Q ss_pred CCCCcceEEEecCCCCHHHHHHHhHhH-----hcCc-e-----ecCCcchHHHHHHHHHHhc
Q 016908 2 KESEQRHVALRINASEEAALMELLNFM-----YSNT-L-----STTAAPALLDVLMAADKFE 52 (380)
Q Consensus 2 ~Es~~~~V~L~~~~v~~~~f~~lL~fi-----Ytg~-i-----~i~~~~~v~~ll~aA~~lq 52 (380)
.|...++|+++ ++++..++.+.+|+ |++. . .|. |+.+++||.||++|.
T Consensus 53 se~~~n~v~f~--di~shiLeKvc~Yl~Yk~rY~~~s~eiPeF~Ip-pemaleLL~aAn~Le 111 (112)
T KOG3473|consen 53 SEAEKNEVYFR--DIPSHILEKVCEYLAYKVRYTNSSTEIPEFDIP-PEMALELLMAANYLE 111 (112)
T ss_pred cccccceEEec--cchHHHHHHHHHHhhheeeeccccccCCCCCCC-HHHHHHHHHHhhhhc
Confidence 35677899999 99999999999998 6665 2 343 488999999999985
No 55
>KOG4350 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=87.85 E-value=0.85 Score=44.73 Aligned_cols=113 Identities=16% Similarity=0.193 Sum_probs=71.5
Q ss_pred chHHHHHHHHHHhchHhHHHHHHHHhhcCCCChHhHHHHHHhccccccccchHHHHHHHHHHHhcccccccccchhhccc
Q 016908 39 PALLDVLMAADKFEVASCMRYCSRLLRNMPMTPESALLYLELPSSVLMGEAVQPLTDAARQYLASRYKDMTKFQDEVMAL 118 (380)
Q Consensus 39 ~~v~~ll~aA~~lqi~~l~~~C~~fL~~~~l~~~Ncl~i~~~a~~~~~~~~~~~L~~~a~~fi~~~f~~v~~~~~efl~L 118 (380)
+||..++.||.+||+++|.+.|+.|+.. |+=+++.- .+...|.+.+.+ ++.. .+.|...
T Consensus 148 ~NvCmifdaA~ly~l~~Lt~~C~mfmDr------nA~~lL~~-------~sFn~LSk~sL~-------e~l~-RDsFfAp 206 (620)
T KOG4350|consen 148 ENVCMIFDAAYLYQLTDLTDYCMMFMDR------NADQLLED-------PSFNRLSKDSLK-------ELLA-RDSFFAP 206 (620)
T ss_pred cceeeeeeHHHHhcchHHHHHHHHHHhc------CHHhhhcC-------cchhhhhHHHHH-------HHHh-hhcccch
Confidence 7999999999999999999999999988 33344432 234444444432 3333 4667666
Q ss_pred CHHHHHhhccCCCcCCCChHHHHHHHHHHHHhhCCChHHHHHHHHHHhcccccCC-CCCHHHHHhh
Q 016908 119 PLAGVEAILSSDDLQIASEDAVYDFVLKWARAQYPRVEERREVLGSRLARFIRFP-HMTCRKLKKV 183 (380)
Q Consensus 119 ~~~~l~~lL~sd~L~v~~E~~v~~~v~~Wi~~d~~~~~~R~~~l~~~Ll~~VRf~-~l~~~~L~~~ 183 (380)
..+.+.++.+=..-|. .+-+..++..++-. . -.+ .+||..||-. +++++.+.+.
T Consensus 207 E~~IFlAv~~W~~~Ns---ke~~k~~~~~VRLP---L----m~l-teLLnvVRPsGllspD~iLDA 261 (620)
T KOG4350|consen 207 ELKIFLAVRSWHQNNS---KEASKVLLELVRLP---L----MTL-TELLNVVRPSGLLSPDTILDA 261 (620)
T ss_pred HHHHHHHHHHHHhcCc---hhhHHHHHHHHhhh---h----ccH-HHHHhccCcccCcCHHHHHHH
Confidence 6666666665443332 22345555555543 1 124 6788999876 5677777663
No 56
>smart00512 Skp1 Found in Skp1 protein family. Family of Skp1 (kinetochore protein required for cell cycle progression) and elongin C (subunit of RNA polymerase II transcription factor SIII) homologues.
Probab=87.83 E-value=0.55 Score=37.39 Aligned_cols=43 Identities=12% Similarity=0.304 Sum_probs=32.1
Q ss_pred eEEEecCCCCHHHHHHHhHhHhcCce-------------------ecCCcchHHHHHHHHHHhch
Q 016908 8 HVALRINASEEAALMELLNFMYSNTL-------------------STTAAPALLDVLMAADKFEV 53 (380)
Q Consensus 8 ~V~L~~~~v~~~~f~~lL~fiYtg~i-------------------~i~~~~~v~~ll~aA~~lqi 53 (380)
.|.|. +|+..+|+.+++|++.-+- .++. +.+.+|+.||++|+|
T Consensus 43 ~Ipl~--~v~~~~L~~Vi~yc~~h~~~~~~~~~~~~~~~wD~~F~~~d~-~~l~dLl~AAnyL~I 104 (104)
T smart00512 43 PIPLP--NVTSKILSKVIEYCEHHVDDPPSVADKDDIPTWDAEFLKIDQ-ETLFELILAANYLDI 104 (104)
T ss_pred CccCC--CcCHHHHHHHHHHHHHcccCCCCccccccccHHHHHHHcCCH-HHHHHHHHHHHhhCC
Confidence 45555 9999999999999964321 1333 578899999999875
No 57
>cd00270 MATH_TRAF_C Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF domain, C-terminal MATH subdomain; TRAF molecules serve as adapter proteins that link cell surface TNFRs and receptors of the interleukin-1/Toll-like family to downstream kinase signaling cascades which results in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses in the immune and inflammatory systems. There are at least six mammalian and three Drosophila proteins containing TRAF domains. The mammalian TRAFs display varying expression profiles, indicating independent and cell type-specific regulation. They display distinct, as well as overlapping functions and interactions with receptors. Most TRAFs, except TRAF1, share N-terminal homology and contain a RING domain, multiple zinc finger domains, and a TRAF domain. TRAFs form homo- and heterotrimers through its TRAF domain. The TRAF domain can be divided into a more divergent N-ter
Probab=82.88 E-value=13 Score=31.31 Aligned_cols=109 Identities=17% Similarity=0.206 Sum_probs=52.2
Q ss_pred CCeEeeccceee--cCCcccccccccCCCCCceeeEEEEeee-c--cC--ceeeEEeeeeeeccccccccccccceeEEe
Q 016908 266 SGRVYSQAFHLG--GQGFFLSAHCNMDQQSSFHCFGLFLGMQ-E--KG--SVSFAVDYEFAARSKPTEEFVSKYKGNYTF 338 (380)
Q Consensus 266 ~g~IY~~~~viG--G~~~~l~~~~~~~~~~~~~~~g~~~~~~-~--~~--~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~ 338 (380)
+..++|..|.+| |+.|.+.-.-+-+........++++.+. . +. +-++.+.+.+...+.. +.-.++ ....++
T Consensus 22 ~~~~~S~~F~vg~~G~~w~i~~yP~G~~~~~~~~lsl~L~l~~~~~d~~~~w~~~~~~~~~l~d~~-~~~~~~-~~~~~~ 99 (149)
T cd00270 22 NTVLYSPPFYTSRYGYKLCLRLYLNGDGTGKGTHLSLFVHVMKGEYDALLEWPFRGKITLTLLDQS-DDSKRK-HITETF 99 (149)
T ss_pred CceEECCCcccCCCCceEEEEEEeCCCCCCCCCEEEEEEEEeccCCCccccCCccceEEEEEECCC-CccccC-ceEEEE
Confidence 468999999999 8887654332222111222344555432 2 11 1124444555555432 211111 111222
Q ss_pred eCCccc---c----cccCCCCCCceeee----CCCceeecceeEEEeee
Q 016908 339 TGGKAV---G----YRNLFAIPWTSFMA----DDSLYFINGILHLRAEL 376 (380)
Q Consensus 339 tg~~~~---~----~~~~~~~~~~~~~~----~~~~~~~~~~~~l~~~~ 376 (380)
+..... + .....+--|..||. .++.|-.|+.|++|+++
T Consensus 100 ~~~~~~~~f~~~~~~~~~~~~G~~~fi~~~~L~~~gfl~dD~l~I~~~v 148 (149)
T cd00270 100 MPDPNSSAFQRPPTGENNIGFGYPEFVPLEKLESRGYVKDDTLFIKVEV 148 (149)
T ss_pred EcCCchHhhcCCCcccCCCCcCcceEeEHHHhccCCCEeCCEEEEEEEE
Confidence 211000 0 00122334666766 35568899999999886
No 58
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=82.58 E-value=1.5 Score=43.31 Aligned_cols=40 Identities=15% Similarity=0.012 Sum_probs=35.3
Q ss_pred CcEEEEecCCCCeeEE------cccCCcceeeEee-CCeEeeccceeecCC
Q 016908 237 VKVVEFERPRQQCVVY------LDLKREECENLFP-SGRVYSQAFHLGGQG 280 (380)
Q Consensus 237 ~~~ve~ydp~~~~W~~------l~~~r~~~~~~~~-~g~IY~~~~viGG~~ 280 (380)
.+.|.+||..+-+|.. .|.||++|+..+- +|.|| +.||+.
T Consensus 206 yNDvy~FdLdtykW~Klepsga~PtpRSGcq~~vtpqg~i~----vyGGYs 252 (521)
T KOG1230|consen 206 YNDVYAFDLDTYKWSKLEPSGAGPTPRSGCQFSVTPQGGIV----VYGGYS 252 (521)
T ss_pred eeeeEEEeccceeeeeccCCCCCCCCCCcceEEecCCCcEE----EEcchh
Confidence 5799999999999998 4789999987765 99999 999974
No 59
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=82.43 E-value=1.1 Score=30.03 Aligned_cols=21 Identities=19% Similarity=0.351 Sum_probs=13.5
Q ss_pred CCcceeeEee-CCeEeeccceeecCC
Q 016908 256 KREECENLFP-SGRVYSQAFHLGGQG 280 (380)
Q Consensus 256 ~r~~~~~~~~-~g~IY~~~~viGG~~ 280 (380)
||.+|+++.+ ++.|| ++||..
T Consensus 1 pR~~h~~~~~~~~~i~----v~GG~~ 22 (49)
T PF13418_consen 1 PRYGHSAVSIGDNSIY----VFGGRD 22 (49)
T ss_dssp --BS-EEEEE-TTEEE----EE--EE
T ss_pred CcceEEEEEEeCCeEE----EECCCC
Confidence 6888988888 59999 999964
No 60
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=80.46 E-value=2.9 Score=42.37 Aligned_cols=40 Identities=10% Similarity=0.028 Sum_probs=34.2
Q ss_pred CcEEEEecCCCCeeEE----------cccCCcceeeEeeCCeEeeccceeecCC
Q 016908 237 VKVVEFERPRQQCVVY----------LDLKREECENLFPSGRVYSQAFHLGGQG 280 (380)
Q Consensus 237 ~~~ve~ydp~~~~W~~----------l~~~r~~~~~~~~~g~IY~~~~viGG~~ 280 (380)
.++.-|.|..+..|.. .|.+|.+|+++.++.++| +-.|++
T Consensus 293 Tssl~clNldt~~W~tl~~d~~ed~tiPR~RAGHCAvAigtRlY----iWSGRD 342 (830)
T KOG4152|consen 293 TSSLACLNLDTMAWETLLMDTLEDNTIPRARAGHCAVAIGTRLY----IWSGRD 342 (830)
T ss_pred ccceeeeeecchheeeeeeccccccccccccccceeEEeccEEE----EEeccc
Confidence 4677889999999998 467899999999999999 877753
No 61
>COG5201 SKP1 SCF ubiquitin ligase, SKP1 component [Posttranslational modification, protein turnover, chaperones]
Probab=79.15 E-value=3 Score=34.39 Aligned_cols=58 Identities=17% Similarity=0.309 Sum_probs=43.6
Q ss_pred EEEecCCCCHHHHHHHhHhHhcCceecCC------------------------cchHHHHHHHHHHhchHhHHHHHHHHh
Q 016908 9 VALRINASEEAALMELLNFMYSNTLSTTA------------------------APALLDVLMAADKFEVASCMRYCSRLL 64 (380)
Q Consensus 9 V~L~~~~v~~~~f~~lL~fiYtg~i~i~~------------------------~~~v~~ll~aA~~lqi~~l~~~C~~fL 64 (380)
+.|..+.|.+.+|+.++.|+-..+-..++ -+.+.++..||++|.++.|.+.||+-+
T Consensus 39 ~p~p~pnVrSsvl~kv~ew~ehh~~s~sede~d~~~rks~p~D~wdr~Fm~vDqemL~eI~laaNYL~ikpLLd~gCKiv 118 (158)
T COG5201 39 YPIPAPNVRSSVLMKVQEWMEHHTSSLSEDENDLEIRKSKPSDFWDRFFMEVDQEMLLEICLAANYLEIKPLLDLGCKIV 118 (158)
T ss_pred CCCcccchhHHHHHHHHHHHHhccccCCCccChHhhhccCCccHHHHHHHHhhHHHHHHHHHhhccccchHHHHHHHHHH
Confidence 34455689999999999999543222211 035678889999999999999999988
Q ss_pred hc
Q 016908 65 RN 66 (380)
Q Consensus 65 ~~ 66 (380)
.+
T Consensus 119 ae 120 (158)
T COG5201 119 AE 120 (158)
T ss_pred HH
Confidence 87
No 62
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=78.65 E-value=2.4 Score=41.85 Aligned_cols=39 Identities=13% Similarity=0.108 Sum_probs=31.8
Q ss_pred CcEEEEecCCCCeeEE-----cccCCccee-eEeeCCeEeeccceeecC
Q 016908 237 VKVVEFERPRQQCVVY-----LDLKREECE-NLFPSGRVYSQAFHLGGQ 279 (380)
Q Consensus 237 ~~~ve~ydp~~~~W~~-----l~~~r~~~~-~~~~~g~IY~~~~viGG~ 279 (380)
.+....||..+++|.. -|.||+.|. ||+..|.+| +.||.
T Consensus 97 YndLy~Yn~k~~eWkk~~spn~P~pRsshq~va~~s~~l~----~fGGE 141 (521)
T KOG1230|consen 97 YNDLYSYNTKKNEWKKVVSPNAPPPRSSHQAVAVPSNILW----LFGGE 141 (521)
T ss_pred eeeeeEEeccccceeEeccCCCcCCCccceeEEeccCeEE----Eeccc
Confidence 4677899999999998 567898875 555669888 99994
No 63
>PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised. This family is found in bacteria. This presumed domain is typically between 170 to 303 amino acids in length. The N-terminal half of this family is a BTB-like domain.
Probab=78.32 E-value=0.82 Score=43.74 Aligned_cols=55 Identities=13% Similarity=0.143 Sum_probs=46.8
Q ss_pred CCChHhHHHHHHhccccccccchHHHHHHHHHHHhcccccccccchhhcccCHHHHHhh
Q 016908 68 PMTPESALLYLELPSSVLMGEAVQPLTDAARQYLASRYKDMTKFQDEVMALPLAGVEAI 126 (380)
Q Consensus 68 ~l~~~Ncl~i~~~a~~~~~~~~~~~L~~~a~~fi~~~f~~v~~~~~efl~L~~~~l~~l 126 (380)
.++++|++.|+--++. -..+.|.+.|..|+..|+.+|+...-++--|+-+.|..|
T Consensus 71 ~l~~~NvvsIliSS~F----L~M~~Lve~cl~y~~~~~~~Iv~~~~nl~Cl~~~Ll~RL 125 (317)
T PF11822_consen 71 SLTPSNVVSILISSEF----LQMESLVEECLQYCHDHMSEIVASPCNLNCLNDNLLTRL 125 (317)
T ss_pred cCCcCcEEEeEehhhh----hccHHHHHHHHHHHHHhHHHHHcCCCCcccCCHHHHHHH
Confidence 6899999999977663 367899999999999999999985567778998887766
No 64
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=76.06 E-value=3 Score=42.30 Aligned_cols=38 Identities=13% Similarity=-0.031 Sum_probs=33.6
Q ss_pred cEEEEecCCCCeeEE------cccCCcceeeEeeCCeEeeccceeecC
Q 016908 238 KVVEFERPRQQCVVY------LDLKREECENLFPSGRVYSQAFHLGGQ 279 (380)
Q Consensus 238 ~~ve~ydp~~~~W~~------l~~~r~~~~~~~~~g~IY~~~~viGG~ 279 (380)
......|..+-.|.. .|.||+-|+++++++++| ++||.
T Consensus 230 gDLW~Ldl~Tl~W~kp~~~G~~PlPRSLHsa~~IGnKMy----vfGGW 273 (830)
T KOG4152|consen 230 GDLWTLDLDTLTWNKPSLSGVAPLPRSLHSATTIGNKMY----VFGGW 273 (830)
T ss_pred cceeEEecceeecccccccCCCCCCcccccceeecceeE----Eecce
Confidence 356677999999998 578999999999999999 99994
No 65
>KOG1987 consensus Speckle-type POZ protein SPOP and related proteins with TRAF, MATH and BTB/POZ domains [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=75.62 E-value=2.4 Score=40.17 Aligned_cols=93 Identities=15% Similarity=0.124 Sum_probs=70.9
Q ss_pred EEEecCCCCHHHHHHHhHhHhcCceecCCcchHH---HHHHHHHHhchHhHHHHHHHHhhcCCCChHhHHHHHHhccccc
Q 016908 9 VALRINASEEAALMELLNFMYSNTLSTTAAPALL---DVLMAADKFEVASCMRYCSRLLRNMPMTPESALLYLELPSSVL 85 (380)
Q Consensus 9 V~L~~~~v~~~~f~~lL~fiYtg~i~i~~~~~v~---~ll~aA~~lqi~~l~~~C~~fL~~~~l~~~Ncl~i~~~a~~~~ 85 (380)
+++. +.++..++.+..|.|+..-.-+. +.+. .++.+|..++...++..|...+.+ .++..|....+..+..
T Consensus 142 ~~~~--d~~~~~~~~~~~F~~~~s~~~~~-~~~~~~~~~~a~~f~~~~~~lk~~~~~~l~~-~~~~~~~~~~l~~~~~-- 215 (297)
T KOG1987|consen 142 ITLL--EEKPEVLEALNGFQVLPSQVSSV-ERIFEKHPDLAAAFKYKNRHLKLACMPVLLS-LIETLNVSQSLQEASN-- 215 (297)
T ss_pred cccc--ccchhhHhhhceEEEeccchHHH-HHhhcCChhhhhccccccHHHHHHHHHHHHH-HHHhhhhcccHHHhch--
Confidence 3444 77899999999999996544433 4443 788999999999999999999999 7888877777776663
Q ss_pred cccchHHHHHHHHHHHhc--cccccc
Q 016908 86 MGEAVQPLTDAARQYLAS--RYKDMT 109 (380)
Q Consensus 86 ~~~~~~~L~~~a~~fi~~--~f~~v~ 109 (380)
+....+..++..++.. +...+.
T Consensus 216 --~~~~~~~~~~~~~~~~~~~ld~l~ 239 (297)
T KOG1987|consen 216 --YDLKEAKSALTYVIAAGFKLDWLE 239 (297)
T ss_pred --hHHHHHHHHHHHHHhccchHhHHH
Confidence 4677778888888776 444444
No 66
>cd03776 MATH_TRAF6 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF6 subfamily, TRAF domain, C-terminal MATH subdomain; composed of proteins with similarity to human TRAF6, including the Drosophila protein DTRAF2. TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF6 is the most divergent in its TRAF domain among the mammalian TRAFs. In addition to mediating TNFR family signaling, it is also an essential signaling molecule of the interleukin-1/Toll-like receptor superfamily. Whereas other TRAF molecules display similar and overlapping TNFR-binding specificities, TRAF6 binds completely different sites on receptors such as CD40 and RANK. TRAF6 serves as a molecular bridge between innate and adaptive immunity and plays a central role in osteoimmunology. DTRAF2, as an activator of nuclear factor-kapp
Probab=73.17 E-value=22 Score=29.91 Aligned_cols=26 Identities=15% Similarity=0.266 Sum_probs=20.6
Q ss_pred CCCceeee----CCCceeecceeEEEeeee
Q 016908 352 IPWTSFMA----DDSLYFINGILHLRAELT 377 (380)
Q Consensus 352 ~~~~~~~~----~~~~~~~~~~~~l~~~~~ 377 (380)
--|..||. .++.|..|+-+++|.+++
T Consensus 118 ~G~~~fi~~~~Le~~~yl~dD~l~I~c~V~ 147 (147)
T cd03776 118 FGYVEFAHIEDLLQRGFVKNDTLLIKIEVN 147 (147)
T ss_pred eeEceeeEHHHhhhCCCccCCEEEEEEEEC
Confidence 34777886 457798999999999875
No 67
>PF07713 DUF1604: Protein of unknown function (DUF1604); InterPro: IPR011666 This domain is found at the N terminus of several eukaryotic RNA processing proteins (e.g Q8N3B7 from SWISSPROT).
Probab=73.15 E-value=1.3 Score=33.86 Aligned_cols=16 Identities=44% Similarity=0.702 Sum_probs=13.4
Q ss_pred EeeCCcccccccCCCC
Q 016908 337 TFTGGKAVGYRNLFAI 352 (380)
Q Consensus 337 ~~tg~~~~~~~~~~~~ 352 (380)
+||||+|+||.|-=|.
T Consensus 23 AFtGGfSAGyfNTVGS 38 (87)
T PF07713_consen 23 AFTGGFSAGYFNTVGS 38 (87)
T ss_pred cccCCcccceeeccCC
Confidence 6899999999997654
No 68
>KOG2714 consensus SETA binding protein SB1 and related proteins, contain BTB/POZ domain [General function prediction only]
Probab=72.32 E-value=3.7 Score=40.70 Aligned_cols=43 Identities=14% Similarity=0.206 Sum_probs=36.9
Q ss_pred CCCHHHHHHHhHhHhcCceecCCcchHHHHHH-HHHHhchHhHHH
Q 016908 15 ASEEAALMELLNFMYSNTLSTTAAPALLDVLM-AADKFEVASCMR 58 (380)
Q Consensus 15 ~v~~~~f~~lL~fiYtg~i~i~~~~~v~~ll~-aA~~lqi~~l~~ 58 (380)
+=+|+.|..||+|+.||++.++. .....+|. -|.||++.++++
T Consensus 59 DRDPdlFaviLn~LRTg~L~~~g-~~~~~llhdEA~fYGl~~llr 102 (465)
T KOG2714|consen 59 DRDPDLFAVILNLLRTGDLDASG-VFPERLLHDEAMFYGLTPLLR 102 (465)
T ss_pred cCCchHHHHHHHHHhcCCCCCcc-CchhhhhhhhhhhcCcHHHHH
Confidence 67999999999999999999975 55555555 999999999987
No 69
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=70.31 E-value=4.6 Score=39.22 Aligned_cols=39 Identities=18% Similarity=0.215 Sum_probs=31.5
Q ss_pred CcEEEEecCCCCeeEEcc----cCCcceeeEeeCC-eEeeccceeecC
Q 016908 237 VKVVEFERPRQQCVVYLD----LKREECENLFPSG-RVYSQAFHLGGQ 279 (380)
Q Consensus 237 ~~~ve~ydp~~~~W~~l~----~~r~~~~~~~~~g-~IY~~~~viGG~ 279 (380)
.+++..|||.+|+|..|+ ..-.+++++.+++ .|| ..||.
T Consensus 112 ~nd~Y~y~p~~nsW~kl~t~sP~gl~G~~~~~~~~~~i~----f~GGv 155 (381)
T COG3055 112 FNDAYRYDPSTNSWHKLDTRSPTGLVGASTFSLNGTKIY----FFGGV 155 (381)
T ss_pred eeeeEEecCCCChhheeccccccccccceeEecCCceEE----EEccc
Confidence 458889999999999943 3345677888888 999 99995
No 70
>smart00061 MATH meprin and TRAF homology.
Probab=70.30 E-value=17 Score=27.29 Aligned_cols=74 Identities=12% Similarity=0.134 Sum_probs=40.8
Q ss_pred eCCeEeeccceeecCCcccccccccCCCCCceeeEEEEeeeccCc----eeeEEeeeeeeccccccccccccceeEEeeC
Q 016908 265 PSGRVYSQAFHLGGQGFFLSAHCNMDQQSSFHCFGLFLGMQEKGS----VSFAVDYEFAARSKPTEEFVSKYKGNYTFTG 340 (380)
Q Consensus 265 ~~g~IY~~~~viGG~~~~l~~~~~~~~~~~~~~~g~~~~~~~~~~----~~~~~~~~~~~r~~~~~~~~~~~~~~~~~tg 340 (380)
.++.++|+.|.+||..|.+....+ ....++++.+.+... -++..++.+-.-+...... .....+.|..
T Consensus 14 ~~~~~~S~~f~~~g~~W~i~~~p~------~~~lsl~L~~~~~~~~~~~w~v~a~~~~~l~~~~~~~~--~~~~~~~F~~ 85 (95)
T smart00061 14 EGESYFSPSEEHFNIPWRLKIYRK------NGFLSLYLHCEKEECDSRKWSIEAEFTLKLVSQNGKSL--SKKDKHVFEK 85 (95)
T ss_pred cCceEeCChhEEcCceeEEEEEEc------CCEEEEEEEeCCCcCCCCCeEEEEEEEEEEEeCCCCEE--eeeeeEEEcC
Confidence 457899999999999998764422 223556665432211 2355666665544432222 2344566664
Q ss_pred Cccccc
Q 016908 341 GKAVGY 346 (380)
Q Consensus 341 ~~~~~~ 346 (380)
+.+.|+
T Consensus 86 ~~~~G~ 91 (95)
T smart00061 86 PSGWGF 91 (95)
T ss_pred CCccce
Confidence 333344
No 71
>KOG2715 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=69.16 E-value=3.7 Score=35.55 Aligned_cols=51 Identities=14% Similarity=0.163 Sum_probs=43.4
Q ss_pred CCCHHHHHHHhHhHhcCceecCCcchHHHHHHHHHHhchHhHHHHHHHHhhc
Q 016908 15 ASEEAALMELLNFMYSNTLSTTAAPALLDVLMAADKFEVASCMRYCSRLLRN 66 (380)
Q Consensus 15 ~v~~~~f~~lL~fiYtg~i~i~~~~~v~~ll~aA~~lqi~~l~~~C~~fL~~ 66 (380)
+-+|.-|.-+|+|+..|++.++. -.=+.+|+-|.++.+++|++...+-+.+
T Consensus 70 DRDP~~FgpvLNylRhgklvl~~-l~eeGvL~EAefyn~~~li~likd~i~d 120 (210)
T KOG2715|consen 70 DRDPFYFGPVLNYLRHGKLVLNK-LSEEGVLEEAEFYNDPSLIQLIKDRIQD 120 (210)
T ss_pred ccCcchHHHHHHHHhcchhhhhh-hhhhccchhhhccCChHHHHHHHHHHHH
Confidence 67899999999999999999985 4557799999999999999776665555
No 72
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=67.75 E-value=5.9 Score=26.34 Aligned_cols=19 Identities=11% Similarity=-0.015 Sum_probs=13.6
Q ss_pred cCCcEEEEecCCCCeeEEc
Q 016908 235 RPVKVVEFERPRQQCVVYL 253 (380)
Q Consensus 235 ~~~~~ve~ydp~~~~W~~l 253 (380)
..++.++.||+.+++|+.+
T Consensus 26 ~~~~d~~~~d~~~~~W~~~ 44 (49)
T PF13418_consen 26 SPLNDLWIFDIETNTWTRL 44 (49)
T ss_dssp EE---EEEEETTTTEEEE-
T ss_pred cccCCEEEEECCCCEEEEC
Confidence 3578999999999999985
No 73
>PF07707 BACK: BTB And C-terminal Kelch; InterPro: IPR011705 This domain is found associated with (IPR000210 from INTERPRO) and (IPR006652 from INTERPRO). BTB (broad-complex, tramtrack and bric a brac) is a Kelch related domain, also known as the POZ domain []. BTB proteins are divided into subgroups depending on what domain lies at the C terminus. Despite the divergence in sequences, the BTB fold is highly conserved. BTB-Kelch proteins have Kelch repeats that form a beta-propeller that can interact with actin filaments []. BTB and C-terminal Kelch (BACK) together constitute a novel conserved domain, which is thought to have a possible role in substrate orientation in Cullin3-based E3 ligase complexes. Four domains, namely the BTB domain, a kelch domain, a BACK domain, and an intervening region (IVR) make up the aryl hydrocarbon receptor (AHR); a ligand-activated transcription factor []. This entry represents the domain associated with BTB and Kelch.; PDB: 3HVE_A 2EQX_A 3I3N_A 4AP2_A 4APF_A.
Probab=67.05 E-value=20 Score=27.58 Aligned_cols=25 Identities=20% Similarity=0.460 Sum_probs=21.9
Q ss_pred HHHHHHHHHhchHhHHHHHHHHhhc
Q 016908 42 LDVLMAADKFEVASCMRYCSRLLRN 66 (380)
Q Consensus 42 ~~ll~aA~~lqi~~l~~~C~~fL~~ 66 (380)
.+++..|..++.+.+.+.|.+|+..
T Consensus 2 ~~i~~~A~~~~~~~L~~~~~~~i~~ 26 (103)
T PF07707_consen 2 LSIYRLAEKYGLEELAEACLRFIAK 26 (103)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred hhHHHHHHHcChHHHHHHHHHHHHH
Confidence 3678999999999999999999998
No 74
>cd03771 MATH_Meprin Meprin family, MATH domain; Meprins are multidomain, highly glycosylated extracellular metalloproteases, which are either anchored to the membrane or secreted into extracellular spaces. They are expressed in renal and intestinal brush border membranes, leukocytes, and cancer cells, and are capable of cleaving growth factors, cytokines, extracellular matrix proteins, and biologically active peptides. Meprin proteases are composed of two related subunits, alpha and beta, which form homo- or hetro-complexes where the basic unit is a disulfide-linked dimer. Despite their similarity, the two subunits differ in their ability to self-associate, in proteolytic processing during biosynthesis and in substrate specificity. Both subunits are synthesized as membrane spanning proteins, however, the alpha subunit is cleaved during biosynthesis and loses its transmembrane domain. Meprin beta forms homodimers or heterotetramers while meprin alpha oligomerizes into large complexes co
Probab=56.00 E-value=79 Score=27.51 Aligned_cols=31 Identities=10% Similarity=0.202 Sum_probs=23.2
Q ss_pred cccCCCCCCceeee----CCCceeecceeEEEeee
Q 016908 346 YRNLFAIPWTSFMA----DDSLYFINGILHLRAEL 376 (380)
Q Consensus 346 ~~~~~~~~~~~~~~----~~~~~~~~~~~~l~~~~ 376 (380)
|++..+-=|..||. .+..|--|+.|.+++++
T Consensus 132 ~~~~~g~G~~~Fis~~~L~~r~ylk~dtl~i~~~~ 166 (167)
T cd03771 132 CYRGPGYGWSTFISHSRLRRRDFLKGDDLIILLDF 166 (167)
T ss_pred ccccCccccccceeHHHhccCCCCcCCEEEEEEEe
Confidence 45666788888888 34448888888888875
No 75
>COG3002 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=54.88 E-value=5.3 Score=41.61 Aligned_cols=58 Identities=21% Similarity=0.229 Sum_probs=43.6
Q ss_pred eeeeeccccccccccccceeEEeeCCccc---ccccCC-CCCCceeeeCCCceeecceeEEEeeeeec
Q 016908 316 YEFAARSKPTEEFVSKYKGNYTFTGGKAV---GYRNLF-AIPWTSFMADDSLYFINGILHLRAELTIR 379 (380)
Q Consensus 316 ~~~~~r~~~~~~~~~~~~~~~~~tg~~~~---~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 379 (380)
-+|.+.|....-|-+++|-.||+|||-++ .+.|+. |.+|.++.+++.++ |--+-|||+
T Consensus 762 mqYyaSTvdn~~yGSGnKa~hnVvgg~GvmqGn~sdlr~GL~~qsv~a~~~~~------H~p~RL~vv 823 (880)
T COG3002 762 MQYYASTVDNHRYGSGNKATHNVVGGIGVMQGNGSDLRCGLALQSVHAGQGWR------HEPLRLTVV 823 (880)
T ss_pred hhhheeccccccccCCchhhheeecceeEEeccccchhccchHHHHHhccCcc------ccceeEEEE
Confidence 35566777778899999999999999877 666766 68999999987643 444445554
No 76
>cd03777 MATH_TRAF3 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF3 subfamily, TRAF domain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF3 was first described as a molecule that binds the cytoplasmic tail of CD40. However, it is not required for CD40 signaling. More recently, TRAF3 has been identified as a key regulator of type I interferon (IFN) production and the mammalian innate antiviral immunity. It mediates IFN responses in Toll-like receptor (TLR)-dependent as well as TLR-independent viral recognition pathways. It is also a key element in immunological homeostasis through its regulation of the anti-inflammatory cytokine interleukin-10. TRAF3 contains a RING finger domain, five zinc finger domains, and a TRAF domain. The TRAF domain can be divided into a more divergent N-terminal al
Probab=54.48 E-value=1.4e+02 Score=26.33 Aligned_cols=18 Identities=33% Similarity=0.519 Sum_probs=15.1
Q ss_pred eEeeccceee--cCCccccc
Q 016908 268 RVYSQAFHLG--GQGFFLSA 285 (380)
Q Consensus 268 ~IY~~~~viG--G~~~~l~~ 285 (380)
.|||++|.+| |+.|++..
T Consensus 62 ~i~S~~Fyvg~~GY~w~i~~ 81 (186)
T cd03777 62 SLYSQPFYTGYFGYKMCARV 81 (186)
T ss_pred EEECCCeEeCCCCeeEEEEE
Confidence 5999999999 99887653
No 77
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=51.77 E-value=18 Score=33.61 Aligned_cols=41 Identities=22% Similarity=0.179 Sum_probs=33.2
Q ss_pred CCcEEEEecCCC----CeeEE----cccCCcceeeEe-eCCeEeeccceeecCC
Q 016908 236 PVKVVEFERPRQ----QCVVY----LDLKREECENLF-PSGRVYSQAFHLGGQG 280 (380)
Q Consensus 236 ~~~~ve~ydp~~----~~W~~----l~~~r~~~~~~~-~~g~IY~~~~viGG~~ 280 (380)
..+.+..|+|.. ..|.+ |..+|.+.++.. .||++. |+||..
T Consensus 89 G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L~DG~vl----IvGG~~ 138 (243)
T PF07250_consen 89 GNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTLPDGRVL----IVGGSN 138 (243)
T ss_pred cccceEEEecCCCCCCCCceECcccccCCCccccceECCCCCEE----EEeCcC
Confidence 456788899886 67987 788999987665 589999 999964
No 78
>cd03781 MATH_TRAF4 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF4 subfamily, TRAF domain, C-terminal MATH subdomain; composed of proteins with similarity to human TRAF4, including the Drosophila protein DTRAF1. TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF4 is highly expressed during embryogenesis, especially in the central and peripheral nervous system. Studies using TRAF4-deficient mice show that TRAF4 is required for neurogenesis, as well as the development of the trachea and the axial skeleton. In addition, TRAF4 augments nuclear factor-kappaB activation triggered by GITR (glucocorticoid-induced TNFR), a receptor expressed in T-cells, B-cells and macrophages. It also participates in counteracting the signaling mediated by Toll-like receptors through its association with TRAF6 and TR
Probab=48.87 E-value=1.4e+02 Score=25.18 Aligned_cols=25 Identities=20% Similarity=0.482 Sum_probs=18.8
Q ss_pred CCCceeee----CCCceeecceeEEEeee
Q 016908 352 IPWTSFMA----DDSLYFINGILHLRAEL 376 (380)
Q Consensus 352 ~~~~~~~~----~~~~~~~~~~~~l~~~~ 376 (380)
--|+.||. ..+.|..|+-|++|.++
T Consensus 125 ~G~~~fi~~~~Le~~~yl~dD~l~Irc~v 153 (154)
T cd03781 125 FGYPKFISHEDLKKRNYIKDDAIFLRASV 153 (154)
T ss_pred cchhHeeEHHHHhhCCcccCCEEEEEEEe
Confidence 34567776 45778889999999875
No 79
>KOG3840 consensus Uncharaterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=46.79 E-value=16 Score=34.72 Aligned_cols=46 Identities=13% Similarity=0.251 Sum_probs=35.6
Q ss_pred eEEEecCCCCHHHHHHHhHhHhcCceecCCcchHHHHHHHHHHhchH
Q 016908 8 HVALRINASEEAALMELLNFMYSNTLSTTAAPALLDVLMAADKFEVA 54 (380)
Q Consensus 8 ~V~L~~~~v~~~~f~~lL~fiYtg~i~i~~~~~v~~ll~aA~~lqi~ 54 (380)
+.++- +|++...|+.||+|--||.+.-..--.|.+|-+|.|+|.|+
T Consensus 140 EyeVA-dGi~s~vFRAILdYYksG~iRCP~~vSvpELrEACDYLlip 185 (438)
T KOG3840|consen 140 EFEVA-DGMTSSCFRAILDYYQSGTMRCPSSVSVSELREACDYLLVP 185 (438)
T ss_pred ceehh-cchhHHHHHHHHHHHhcCceeCCCCCchHHHHhhcceEEee
Confidence 44443 48999999999999999998874325677888888887775
No 80
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=46.47 E-value=30 Score=37.50 Aligned_cols=52 Identities=21% Similarity=0.397 Sum_probs=36.5
Q ss_pred eEEEecCCCCHHHHHHHhHhHhcCcee--------------cCCcchHHH-------HHHHHHHhchHhHHHHH
Q 016908 8 HVALRINASEEAALMELLNFMYSNTLS--------------TTAAPALLD-------VLMAADKFEVASCMRYC 60 (380)
Q Consensus 8 ~V~L~~~~v~~~~f~~lL~fiYtg~i~--------------i~~~~~v~~-------ll~aA~~lqi~~l~~~C 60 (380)
.-+|..+++.+..|+.||+||||...- +- ++|... +...+.+|++.+|...-
T Consensus 609 ~~~~~ve~i~p~mfe~lL~~iYtdt~~~P~heDdidci~fs~~-k~N~~qrtrtCeMl~~~lekf~l~el~~~~ 681 (1267)
T KOG0783|consen 609 HSTIRVEDIPPLMFEILLHYIYTDTLLSPWHEDDIDCIRFSPL-KENLSQRTRTCEMLANLLEKFHLAELLPFS 681 (1267)
T ss_pred CceeeeccCCHHHHHHHHHHHhcccccCCccccchhhhhcccc-ccChhhcccHHHHHHHHHhhhhHHhhhhhh
Confidence 334446699999999999999998321 11 144444 77788888888887543
No 81
>KOG2075 consensus Topoisomerase TOP1-interacting protein BTBD1 [Function unknown]
Probab=45.80 E-value=55 Score=33.25 Aligned_cols=45 Identities=11% Similarity=0.139 Sum_probs=37.3
Q ss_pred CCChHhHHHHHHhccccccccchHHHHHHHHHHHhcccccccccchhhcccCH
Q 016908 68 PMTPESALLYLELPSSVLMGEAVQPLTDAARQYLASRYKDMTKFQDEVMALPL 120 (380)
Q Consensus 68 ~l~~~Ncl~i~~~a~~~~~~~~~~~L~~~a~~fi~~~f~~v~~~~~efl~L~~ 120 (380)
.+.++||+.++.+|.. |..+.|.+.|.+||..+.... .+|+.|+.
T Consensus 184 ~~~~dtvi~tl~~AkK----Y~VpaLer~CVkflr~~l~~~----naf~~L~q 228 (521)
T KOG2075|consen 184 KLAADTVITTLYAAKK----YLVPALERQCVKFLRKNLMAD----NAFLELFQ 228 (521)
T ss_pred hhhHHHHHHHHHHHHH----hhhHHHHHHHHHHHHHhcCCh----HHHHHHHH
Confidence 5899999999999994 689999999999999876543 56666664
No 82
>smart00875 BACK BTB And C-terminal Kelch. The BACK domain is found juxtaposed to the BTB domain; they are separated by as little as two residues.
Probab=39.84 E-value=1.4e+02 Score=22.36 Aligned_cols=24 Identities=8% Similarity=0.174 Sum_probs=20.9
Q ss_pred HHHHHHHHhchHhHHHHHHHHhhc
Q 016908 43 DVLMAADKFEVASCMRYCSRLLRN 66 (380)
Q Consensus 43 ~ll~aA~~lqi~~l~~~C~~fL~~ 66 (380)
+++..|+.++.+.+.+.|.+|+.+
T Consensus 3 ~i~~~a~~~~~~~L~~~~~~~i~~ 26 (101)
T smart00875 3 GIRRFAELYGLEELLEKALRFILK 26 (101)
T ss_pred hHHHHHHHhChHHHHHHHHHHHHH
Confidence 467788999999999999999877
No 83
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=37.57 E-value=45 Score=32.61 Aligned_cols=37 Identities=16% Similarity=0.033 Sum_probs=31.3
Q ss_pred cEEEEecCCCCeeEE---cccCCcceeeEeeCCeEeeccceeecCC
Q 016908 238 KVVEFERPRQQCVVY---LDLKREECENLFPSGRVYSQAFHLGGQG 280 (380)
Q Consensus 238 ~~ve~ydp~~~~W~~---l~~~r~~~~~~~~~g~IY~~~~viGG~~ 280 (380)
+.|..+| .+.|.. ||.++.+-..+..++.|| +|||..
T Consensus 320 ~~Vy~~d--~g~Wk~~GeLp~~l~YG~s~~~nn~vl----~IGGE~ 359 (381)
T COG3055 320 SEVYIFD--NGSWKIVGELPQGLAYGVSLSYNNKVL----LIGGET 359 (381)
T ss_pred ceEEEEc--CCceeeecccCCCccceEEEecCCcEE----EEcccc
Confidence 4666666 999999 999888888888999999 999974
No 84
>KOG2723 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=32.56 E-value=71 Score=29.17 Aligned_cols=46 Identities=11% Similarity=0.232 Sum_probs=37.0
Q ss_pred CCCHHHHHHHhHhHhcCceecCCc-chHHHHHHHHHHhchHhHHHHH
Q 016908 15 ASEEAALMELLNFMYSNTLSTTAA-PALLDVLMAADKFEVASCMRYC 60 (380)
Q Consensus 15 ~v~~~~f~~lL~fiYtg~i~i~~~-~~v~~ll~aA~~lqi~~l~~~C 60 (380)
+=+-..|+-||+|+.|..+.+.+- .++..|..-|+++|++.....+
T Consensus 56 DRDG~lFRyvL~~LRt~~l~lpe~f~e~~~L~rEA~f~~l~~~~~~l 102 (221)
T KOG2723|consen 56 DRDGFLFRYVLDYLRTKALLLPEDFAEVERLVREAEFFQLEAPVTYL 102 (221)
T ss_pred cCCcchHHHHHHHhcccccccchhhhhHHHHHHHHHHHccccHHHHH
Confidence 456789999999999977766431 4689999999999999888543
No 85
>KOG2437 consensus Muskelin [Signal transduction mechanisms]
Probab=26.80 E-value=77 Score=32.54 Aligned_cols=39 Identities=13% Similarity=-0.001 Sum_probs=30.1
Q ss_pred cEEEEecCCCCeeEEccc---------CCcceeeEeeCCe--EeeccceeecCC
Q 016908 238 KVVEFERPRQQCVVYLDL---------KREECENLFPSGR--VYSQAFHLGGQG 280 (380)
Q Consensus 238 ~~ve~ydp~~~~W~~l~~---------~r~~~~~~~~~g~--IY~~~~viGG~~ 280 (380)
+....||..++.|.-|.. ....|.+++.+.+ || |.||..
T Consensus 346 sDfW~FDi~~~~W~~ls~dt~~dGGP~~vfDHqM~Vd~~k~~iy----VfGGr~ 395 (723)
T KOG2437|consen 346 SDFWRFDIDTNTWMLLSEDTAADGGPKLVFDHQMCVDSEKHMIY----VFGGRI 395 (723)
T ss_pred cceEEEecCCceeEEecccccccCCcceeecceeeEecCcceEE----EecCee
Confidence 467789999999998432 2346788888877 99 999964
No 86
>KOG2838 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=25.44 E-value=73 Score=30.02 Aligned_cols=70 Identities=17% Similarity=0.271 Sum_probs=47.1
Q ss_pred ceEEEecCCCCHHHHH-HHhHhHhcCceecCC---------------------------cchHHHHHHHHHHhchHhHHH
Q 016908 7 RHVALRINASEEAALM-ELLNFMYSNTLSTTA---------------------------APALLDVLMAADKFEVASCMR 58 (380)
Q Consensus 7 ~~V~L~~~~v~~~~f~-~lL~fiYtg~i~i~~---------------------------~~~v~~ll~aA~~lqi~~l~~ 58 (380)
+.|.+. .-|=|.+|. .++.+|||..+.++- .+...++++.|-+|.+.-|.+
T Consensus 300 kRIifd-E~I~PkafA~i~lhclYTD~lDlSl~hkce~SigSLSeakAitnaGkpn~~qaaeAleL~~IAlFfEfemLaQ 378 (401)
T KOG2838|consen 300 KRIIFD-ELIFPKAFAPIFLHCLYTDRLDLSLAHKCEDSIGSLSEAKAITNAGKPNDLQAAEALELIEIALFFEFEMLAQ 378 (401)
T ss_pred ceeech-hhhcchhhhhhhhhhheecccchhhcccCCcccccHHHHHHHHcCCCCchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 345444 124455554 578999998775431 023457788888999999999
Q ss_pred HHHHHhhcCCCChHhHHHHH
Q 016908 59 YCSRLLRNMPMTPESALLYL 78 (380)
Q Consensus 59 ~C~~fL~~~~l~~~Ncl~i~ 78 (380)
+|.+-+.. ....+|..+++
T Consensus 379 a~e~Vir~-acaadlsn~cL 397 (401)
T KOG2838|consen 379 ACEDVIRK-ACAADLSNGCL 397 (401)
T ss_pred HHHHHHHh-hhhhhcccccc
Confidence 99998888 67766655544
No 87
>KOG4427 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=25.41 E-value=3.5e+02 Score=29.47 Aligned_cols=107 Identities=20% Similarity=0.329 Sum_probs=71.6
Q ss_pred CCChHhHHHHHHhccccccccchHHHHHHHHHHHhcccccccccchhhccc-CHHHHHhhccCCCcCCCChHHH----H-
Q 016908 68 PMTPESALLYLELPSSVLMGEAVQPLTDAARQYLASRYKDMTKFQDEVMAL-PLAGVEAILSSDDLQIASEDAV----Y- 141 (380)
Q Consensus 68 ~l~~~Ncl~i~~~a~~~~~~~~~~~L~~~a~~fi~~~f~~v~~~~~efl~L-~~~~l~~lL~sd~L~v~~E~~v----~- 141 (380)
.++-+|=+.+.+.-..+ .-..+..+.+..|+. .|..+.+ ++|+.| ++.++..+|+-|+-.+.=++-- |
T Consensus 898 sVtneNKi~YIH~MA~~---rmnrqi~eqt~Af~r-G~rsii~--P~WlslFs~~elq~LiSG~nsdiDl~DLkrnt~Y~ 971 (1096)
T KOG4427|consen 898 SVTNENKIQYIHAMAHF---RMNRQIVEQTNAFYR-GFRSIIS--PEWLSLFSPPELQRLISGDNSDIDLDDLKRNTKYY 971 (1096)
T ss_pred eccccchHHHHHHHHHH---HHHHHHHHHHHHHHH-HHHHhcC--HHHHHccCcHHHHHHhcCCCCCCCHHHHHhcCEee
Confidence 45666777666532211 124667777777765 4888885 999975 8899999999876544322211 1
Q ss_pred ------HHHHHHH---HhhCCChHHHHHHHHHHhcccccCCCCCHHHHH
Q 016908 142 ------DFVLKWA---RAQYPRVEERREVLGSRLARFIRFPHMTCRKLK 181 (380)
Q Consensus 142 ------~~v~~Wi---~~d~~~~~~R~~~l~~~Ll~~VRf~~l~~~~L~ 181 (380)
.-+++|+ -..+.++++|.-++ +-+-+|-|-|++.-.+|+
T Consensus 972 GGfh~shrvIkwlWdIl~~dFt~eERklfL-KFVTSCSrpPlLGFayLe 1019 (1096)
T KOG4427|consen 972 GGFHDSHRVIKWLWDILAGDFTPEERKLFL-KFVTSCSRPPLLGFAYLE 1019 (1096)
T ss_pred cccCCcchhHHHHHHHHhccCChHHHHHHH-HHHhhcCCCccccccccC
Confidence 3466663 23334488998888 888899999999887774
No 88
>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation []. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule []. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [, , ]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.; GO: 0005515 protein binding; PDB: 3M5B_A 1R28_B 3LBZ_A 3E4U_F 3BIM_B 1R2B_A 1R29_A 2VPK_A 2YY9_B 3GA1_A ....
Probab=24.46 E-value=62 Score=24.99 Aligned_cols=32 Identities=22% Similarity=0.330 Sum_probs=27.9
Q ss_pred CC-hHhHHHHHHhccccccccchHHHHHHHHHHHhcc
Q 016908 69 MT-PESALLYLELPSSVLMGEAVQPLTDAARQYLASR 104 (380)
Q Consensus 69 l~-~~Ncl~i~~~a~~~~~~~~~~~L~~~a~~fi~~~ 104 (380)
++ .+++..++.+|.. ++++.|.+.|.+++.++
T Consensus 78 ~~~~~~~~~ll~lA~~----~~~~~L~~~~~~~l~~~ 110 (111)
T PF00651_consen 78 INSDENVEELLELADK----LQIPELKKACEKFLQES 110 (111)
T ss_dssp EE-TTTHHHHHHHHHH----TTBHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHH----hCcHHHHHHHHHHHHhC
Confidence 45 8899999999984 69999999999999765
No 89
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=22.64 E-value=96 Score=19.43 Aligned_cols=28 Identities=25% Similarity=0.190 Sum_probs=15.2
Q ss_pred CeeEE-cccCCcceeeEeeCCeEeeccceeecCC
Q 016908 248 QCVVY-LDLKREECENLFPSGRVYSQAFHLGGQG 280 (380)
Q Consensus 248 ~~W~~-l~~~r~~~~~~~~~g~IY~~~~viGG~~ 280 (380)
..|+. ++. ....+.++.+|.|| +.++.+
T Consensus 3 ~~W~~~~~~-~~~~~~~v~~g~vy----v~~~dg 31 (40)
T PF13570_consen 3 VLWSYDTGG-PIWSSPAVAGGRVY----VGTGDG 31 (40)
T ss_dssp EEEEEE-SS----S--EECTSEEE----EE-TTS
T ss_pred eeEEEECCC-CcCcCCEEECCEEE----EEcCCC
Confidence 36777 554 44456788899999 766644
No 90
>PF10070 DUF2309: Uncharacterized protein conserved in bacteria (DUF2309); InterPro: IPR018752 Members of this family of hypothetical bacterial proteins have no known function.
Probab=21.35 E-value=48 Score=36.24 Aligned_cols=51 Identities=24% Similarity=0.343 Sum_probs=39.3
Q ss_pred eEEeeeeeeccccccccccccceeEEeeCCccc---ccccCC-CCCCceeeeCCCce
Q 016908 312 FAVDYEFAARSKPTEEFVSKYKGNYTFTGGKAV---GYRNLF-AIPWTSFMADDSLY 364 (380)
Q Consensus 312 ~~~~~~~~~r~~~~~~~~~~~~~~~~~tg~~~~---~~~~~~-~~~~~~~~~~~~~~ 364 (380)
+.++|. +.+....-|=+.+|=-||++|+-+| ...||. |.||.++.+|+.+|
T Consensus 698 INlqYY--fStVDn~~~GsGsKv~HNVvG~iGV~eGn~gDLR~GLP~QsV~~g~~~~ 752 (788)
T PF10070_consen 698 INLQYY--FSTVDNERYGSGSKVLHNVVGGIGVMEGNGGDLRTGLPWQSVHDGGRWY 752 (788)
T ss_pred ccceee--eeeccccccCCCCccchhcccceeEEecCCccccccCcHHHhccCCccc
Confidence 444444 4555668899999999999998877 555776 99999999977644
No 91
>PHA02152 hypothetical protein
Probab=21.30 E-value=11 Score=28.41 Aligned_cols=38 Identities=18% Similarity=0.352 Sum_probs=31.6
Q ss_pred ccccceeEEeeCCcccccccCCCCCCceeeeCCCceee
Q 016908 329 VSKYKGNYTFTGGKAVGYRNLFAIPWTSFMADDSLYFI 366 (380)
Q Consensus 329 ~~~~~~~~~~tg~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (380)
+++-+.+.++..|.+.|=.|++-..|+-||+-..+||-
T Consensus 32 i~~a~~ii~vv~g~~~g~~~~~~~ew~~fissgr~~~~ 69 (96)
T PHA02152 32 IRYAENIINVVNGARFGEENKPVAEWFYFISSGRVYFK 69 (96)
T ss_pred HHHHHHHHHhhcccchhhcCCchhhhhhhhhcchhhHH
Confidence 45577788888888999999999999999997666763
No 92
>COG4025 Predicted membrane protein [Function unknown]
Probab=21.17 E-value=1e+02 Score=28.43 Aligned_cols=36 Identities=28% Similarity=0.277 Sum_probs=28.2
Q ss_pred CceeeEEEEeeeccCceeeEEeeeeeecccccccccc
Q 016908 294 SFHCFGLFLGMQEKGSVSFAVDYEFAARSKPTEEFVS 330 (380)
Q Consensus 294 ~~~~~g~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 330 (380)
+...||...-++|| ++.+.|++|+||..+|.-..+.
T Consensus 212 RdyTfGiV~EV~E~-~v~V~V~~DIaaNvkPg~YiVe 247 (284)
T COG4025 212 RDYTFGIVEEVKED-LVEVFVHDDIAANVKPGYYIVE 247 (284)
T ss_pred ccceeEEEEEEcCC-eEEEEEccchhhcCCCCeEEec
Confidence 45678888878888 7789999999999998444433
No 93
>cd03780 MATH_TRAF5 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF5 subfamily, TRAF domain, C-terminal MATH subdomain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF5 was identified as an activator of nuclear factor-kappaB and a regulator of lymphotoxin-beta receptor and CD40 signaling. Its interaction with CD40 is indirect, involving hetero-oligomerization with TRAF3. In addition, TRAF5 has been shown to associate with other TNFRs including CD27, CD30, OX40 and GITR (glucocorticoid-induced TNFR). It plays a role in modulating Th2 immune responses (driven by OX40 costimulation) and T-cell activation (triggered by GITR). It is also involved in osteoclastogenesis. TRAF5 contains a RING finger domain, five zinc finger domains, and a TRAF domain. The TRAF domain can be divided into a more dive
Probab=20.91 E-value=5.1e+02 Score=21.82 Aligned_cols=18 Identities=28% Similarity=0.407 Sum_probs=15.3
Q ss_pred eEeeccc--eeecCCccccc
Q 016908 268 RVYSQAF--HLGGQGFFLSA 285 (380)
Q Consensus 268 ~IY~~~~--viGG~~~~l~~ 285 (380)
.|+|+.| .+||+.|++..
T Consensus 24 ~i~S~~Fyt~~~Gy~w~i~~ 43 (148)
T cd03780 24 SIFSQPFYTSRCGYRLCARA 43 (148)
T ss_pred EEECCCcccCCCCeeEEEEE
Confidence 5999999 99999887653
Done!