Query 016909
Match_columns 380
No_of_seqs 269 out of 2399
Neff 7.2
Searched_HMMs 46136
Date Fri Mar 29 03:53:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016909.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016909hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1071 AcoA Pyruvate/2-oxoglu 100.0 3.3E-93 7.1E-98 691.1 36.1 351 13-364 2-357 (358)
2 KOG1182 Branched chain alpha-k 100.0 4.2E-84 9E-89 602.2 25.1 379 1-379 51-430 (432)
3 PLN02269 Pyruvate dehydrogenas 100.0 4E-81 8.6E-86 616.4 35.7 319 31-352 25-344 (362)
4 CHL00149 odpA pyruvate dehydro 100.0 8.7E-80 1.9E-84 604.7 37.1 320 30-351 14-341 (341)
5 TIGR03181 PDH_E1_alph_x pyruva 100.0 1.9E-79 4E-84 603.4 37.7 341 13-363 1-341 (341)
6 TIGR03182 PDH_E1_alph_y pyruva 100.0 5.5E-79 1.2E-83 594.3 33.8 314 35-350 1-315 (315)
7 PLN02374 pyruvate dehydrogenas 100.0 1.5E-77 3.3E-82 601.7 37.1 322 30-353 80-409 (433)
8 KOG0225 Pyruvate dehydrogenase 100.0 3E-78 6.6E-83 567.6 25.6 320 30-353 53-373 (394)
9 PF00676 E1_dh: Dehydrogenase 100.0 5.6E-74 1.2E-78 555.3 30.1 300 42-342 1-300 (300)
10 cd02000 TPP_E1_PDC_ADC_BCADC T 100.0 2.9E-72 6.2E-77 542.7 33.2 292 41-333 1-293 (293)
11 PRK09404 sucA 2-oxoglutarate d 100.0 1.6E-60 3.5E-65 511.7 36.8 340 32-378 185-565 (924)
12 TIGR00239 2oxo_dh_E1 2-oxoglut 100.0 6.2E-55 1.3E-59 466.7 35.5 344 31-378 184-566 (929)
13 cd02016 TPP_E1_OGDC_like Thiam 100.0 2.7E-49 5.9E-54 372.7 20.2 230 51-284 1-262 (265)
14 PRK12270 kgd alpha-ketoglutara 100.0 1.3E-35 2.7E-40 311.2 33.7 344 30-378 487-869 (1228)
15 PRK12315 1-deoxy-D-xylulose-5- 100.0 7.9E-34 1.7E-38 297.3 22.1 223 29-273 11-249 (581)
16 COG3959 Transketolase, N-termi 100.0 1E-31 2.2E-36 242.3 21.4 218 38-268 7-242 (243)
17 KOG0450 2-oxoglutarate dehydro 100.0 2.4E-29 5.3E-34 254.6 25.3 345 29-378 242-631 (1017)
18 KOG0451 Predicted 2-oxoglutara 100.0 9.1E-30 2E-34 252.6 20.1 341 31-378 152-544 (913)
19 COG0567 SucA 2-oxoglutarate de 100.0 1.5E-28 3.3E-33 258.4 26.5 342 30-379 169-548 (906)
20 PRK12754 transketolase; Review 100.0 5.1E-28 1.1E-32 255.4 29.4 175 88-274 58-253 (663)
21 TIGR00232 tktlase_bact transke 100.0 7.5E-28 1.6E-32 255.2 28.9 179 88-276 54-251 (653)
22 PF00456 Transketolase_N: Tran 100.0 2.2E-28 4.7E-33 239.2 20.6 179 87-276 54-252 (332)
23 PRK12753 transketolase; Review 100.0 1.2E-27 2.7E-32 253.6 24.8 180 87-276 57-255 (663)
24 cd02012 TPP_TK Thiamine pyroph 100.0 1.5E-27 3.2E-32 226.5 22.8 181 87-276 49-236 (255)
25 PTZ00089 transketolase; Provis 100.0 2E-27 4.4E-32 252.2 25.0 195 87-291 59-276 (661)
26 PRK05899 transketolase; Review 100.0 9.9E-27 2.2E-31 246.3 29.3 185 87-282 61-263 (624)
27 cd02007 TPP_DXS Thiamine pyrop 100.0 1.5E-27 3.2E-32 217.7 17.5 167 86-271 24-194 (195)
28 cd02017 TPP_E1_EcPDC_like Thia 100.0 1.9E-26 4.1E-31 226.7 25.4 183 82-273 49-323 (386)
29 PLN02790 transketolase 99.9 1.9E-26 4.2E-31 244.4 22.8 183 86-278 46-249 (654)
30 PRK05444 1-deoxy-D-xylulose-5- 99.9 5.6E-26 1.2E-30 238.6 21.5 240 13-275 2-250 (580)
31 COG0021 TktA Transketolase [Ca 99.9 1E-24 2.3E-29 222.3 23.7 176 87-274 59-255 (663)
32 TIGR00759 aceE pyruvate dehydr 99.9 5.4E-24 1.2E-28 225.6 25.7 228 35-273 71-394 (885)
33 cd02011 TPP_PK Thiamine pyroph 99.9 2.7E-25 5.9E-30 205.1 13.5 167 71-254 2-174 (227)
34 TIGR00204 dxs 1-deoxy-D-xylulo 99.9 1.5E-24 3.3E-29 228.7 21.0 226 29-274 9-281 (617)
35 TIGR03186 AKGDH_not_PDH alpha- 99.9 2.9E-23 6.3E-28 222.3 27.1 231 35-274 71-395 (889)
36 PRK12571 1-deoxy-D-xylulose-5- 99.9 2.3E-23 5.1E-28 220.4 21.9 231 27-276 15-292 (641)
37 PLN02234 1-deoxy-D-xylulose-5- 99.9 1.8E-22 4E-27 211.5 25.6 198 69-277 108-331 (641)
38 PRK13012 2-oxoacid dehydrogena 99.9 1.9E-22 4E-27 216.9 25.9 230 35-273 85-408 (896)
39 KOG0523 Transketolase [Carbohy 99.9 1.2E-22 2.7E-27 205.1 21.4 218 44-273 13-247 (632)
40 PRK09405 aceE pyruvate dehydro 99.9 7E-22 1.5E-26 211.8 26.0 228 34-272 76-399 (891)
41 PLN02582 1-deoxy-D-xylulose-5- 99.9 1.1E-21 2.4E-26 207.2 21.4 229 29-275 42-328 (677)
42 PRK05261 putative phosphoketol 99.8 1.4E-19 3.1E-24 192.0 17.3 201 64-271 49-287 (785)
43 PRK11864 2-ketoisovalerate fer 99.8 1.3E-18 2.9E-23 167.2 17.8 173 93-272 14-212 (300)
44 cd02004 TPP_BZL_OCoD_HPCL Thia 99.8 4E-18 8.7E-23 152.3 13.2 114 141-266 46-171 (172)
45 cd00568 TPP_enzymes Thiamine p 99.8 3.4E-18 7.4E-23 151.2 11.6 116 139-266 42-168 (168)
46 cd02013 TPP_Xsc_like Thiamine 99.8 4.4E-18 9.6E-23 155.4 11.7 120 141-269 51-181 (196)
47 PF13292 DXP_synthase_N: 1-deo 99.8 1.2E-17 2.6E-22 156.1 13.5 217 29-266 9-270 (270)
48 cd02006 TPP_Gcl Thiamine pyrop 99.7 9.9E-18 2.2E-22 153.8 11.0 121 141-269 55-196 (202)
49 cd02002 TPP_BFDC Thiamine pyro 99.7 1.3E-17 2.8E-22 149.6 10.8 112 143-266 49-178 (178)
50 COG1154 Dxs Deoxyxylulose-5-ph 99.7 1.2E-16 2.6E-21 162.8 16.9 226 27-273 11-285 (627)
51 cd02014 TPP_POX Thiamine pyrop 99.7 5.6E-17 1.2E-21 145.9 12.2 116 141-268 49-174 (178)
52 PRK06163 hypothetical protein; 99.7 1.4E-16 3E-21 146.1 14.9 130 142-288 56-189 (202)
53 cd02015 TPP_AHAS Thiamine pyro 99.7 1.7E-16 3.8E-21 143.6 13.4 116 141-268 48-175 (186)
54 cd03372 TPP_ComE Thiamine pyro 99.7 2.5E-16 5.5E-21 141.9 14.0 115 142-270 41-158 (179)
55 cd02003 TPP_IolD Thiamine pyro 99.7 1.7E-16 3.7E-21 146.0 12.3 117 141-269 46-186 (205)
56 cd02008 TPP_IOR_alpha Thiamine 99.7 2.9E-16 6.3E-21 141.3 13.5 117 141-266 49-176 (178)
57 TIGR03846 sulfopy_beta sulfopy 99.7 3.6E-16 7.8E-21 141.2 14.0 113 142-268 41-157 (181)
58 cd03371 TPP_PpyrDC Thiamine py 99.7 5.8E-16 1.2E-20 140.6 15.3 118 141-270 46-166 (188)
59 cd02001 TPP_ComE_PpyrDC Thiami 99.7 1.4E-16 3E-21 140.6 10.8 113 142-267 41-155 (157)
60 cd02010 TPP_ALS Thiamine pyrop 99.7 2.1E-16 4.6E-21 142.1 12.0 116 141-268 46-171 (177)
61 PLN02225 1-deoxy-D-xylulose-5- 99.7 1E-15 2.2E-20 161.3 16.1 223 29-270 87-367 (701)
62 cd02005 TPP_PDC_IPDC Thiamine 99.7 8.4E-16 1.8E-20 139.0 13.1 117 141-268 48-175 (183)
63 PRK07524 hypothetical protein; 99.6 1E-15 2.2E-20 159.8 12.7 118 142-271 406-533 (535)
64 PF02775 TPP_enzyme_C: Thiamin 99.6 7.5E-16 1.6E-20 135.0 9.8 114 141-264 26-153 (153)
65 PRK08327 acetolactate synthase 99.6 1.7E-15 3.6E-20 159.4 13.1 119 142-266 429-566 (569)
66 cd02009 TPP_SHCHC_synthase Thi 99.6 1.4E-15 3.1E-20 136.4 10.4 112 142-266 50-174 (175)
67 TIGR01504 glyox_carbo_lig glyo 99.6 2E-15 4.3E-20 159.4 10.7 119 142-268 417-556 (588)
68 PRK07092 benzoylformate decarb 99.6 6E-15 1.3E-19 153.9 13.4 113 142-266 406-529 (530)
69 PRK06154 hypothetical protein; 99.6 6.4E-15 1.4E-19 154.8 13.3 119 141-268 429-556 (565)
70 PRK08266 hypothetical protein; 99.6 9.4E-15 2E-19 152.8 13.9 118 142-271 401-529 (542)
71 PRK12474 hypothetical protein; 99.6 5.2E-15 1.1E-19 154.0 11.7 113 142-266 388-518 (518)
72 COG0028 IlvB Thiamine pyrophos 99.6 6.6E-15 1.4E-19 153.6 12.2 118 140-269 405-533 (550)
73 cd03375 TPP_OGFOR Thiamine pyr 99.6 1.1E-14 2.3E-19 132.8 11.8 116 142-267 50-184 (193)
74 PRK06725 acetolactate synthase 99.6 7.8E-15 1.7E-19 154.3 12.2 115 142-268 421-546 (570)
75 PRK06546 pyruvate dehydrogenas 99.6 1.5E-14 3.3E-19 152.4 13.7 116 141-268 406-531 (578)
76 PRK09107 acetolactate synthase 99.6 1E-14 2.3E-19 154.1 12.3 115 142-268 429-555 (595)
77 cd03376 TPP_PFOR_porB_like Thi 99.6 1.4E-14 3E-19 136.0 11.7 122 139-270 58-203 (235)
78 PRK11269 glyoxylate carboligas 99.6 7E-15 1.5E-19 155.3 10.9 120 141-268 417-557 (591)
79 PRK07586 hypothetical protein; 99.6 1.4E-14 2.9E-19 150.7 12.0 113 142-266 384-514 (514)
80 PRK05858 hypothetical protein; 99.6 1.4E-14 3.1E-19 151.6 11.8 115 142-268 406-531 (542)
81 PRK06882 acetolactate synthase 99.6 2.5E-14 5.4E-19 150.7 13.4 117 141-268 419-547 (574)
82 PRK07064 hypothetical protein; 99.6 1.9E-14 4.2E-19 150.5 12.2 114 142-267 404-528 (544)
83 PRK07979 acetolactate synthase 99.6 2.6E-14 5.6E-19 150.6 13.2 119 141-268 419-549 (574)
84 TIGR03297 Ppyr-DeCO2ase phosph 99.6 6.2E-14 1.3E-18 139.2 15.1 118 141-270 219-339 (361)
85 TIGR02418 acolac_catab acetola 99.6 2.1E-14 4.6E-19 150.1 12.1 117 141-269 406-532 (539)
86 PRK08199 thiamine pyrophosphat 99.6 3.1E-14 6.7E-19 149.5 13.2 116 141-268 413-539 (557)
87 PRK09124 pyruvate dehydrogenas 99.5 3.4E-14 7.4E-19 149.6 13.3 116 141-268 406-531 (574)
88 PRK06112 acetolactate synthase 99.5 3.3E-14 7.1E-19 149.9 13.1 115 142-268 436-561 (578)
89 PRK07418 acetolactate synthase 99.5 2.1E-14 4.6E-19 152.4 11.7 116 141-268 432-560 (616)
90 PLN02573 pyruvate decarboxylas 99.5 3.2E-14 6.9E-19 150.0 12.9 116 141-266 426-551 (578)
91 PRK07710 acetolactate synthase 99.5 5.4E-14 1.2E-18 148.0 14.2 115 142-268 423-549 (571)
92 PRK06965 acetolactate synthase 99.5 4.2E-14 9.1E-19 149.4 13.3 117 141-268 435-563 (587)
93 PRK08979 acetolactate synthase 99.5 4.7E-14 1E-18 148.5 13.2 116 142-268 420-547 (572)
94 TIGR02720 pyruv_oxi_spxB pyruv 99.5 5.9E-14 1.3E-18 147.9 13.0 117 142-268 407-533 (575)
95 PRK06457 pyruvate dehydrogenas 99.5 6.7E-14 1.4E-18 146.7 13.1 116 141-268 394-520 (549)
96 TIGR03393 indolpyr_decarb indo 99.5 4.2E-14 9.1E-19 147.9 11.6 114 141-266 402-526 (539)
97 PRK06466 acetolactate synthase 99.5 7.8E-14 1.7E-18 146.9 13.5 117 141-268 421-549 (574)
98 PRK08617 acetolactate synthase 99.5 4.3E-14 9.2E-19 148.2 11.4 116 141-268 412-537 (552)
99 TIGR03254 oxalate_oxc oxalyl-C 99.5 7.6E-14 1.7E-18 146.4 13.1 114 142-268 416-539 (554)
100 PRK07525 sulfoacetaldehyde ace 99.5 6.5E-14 1.4E-18 148.0 12.6 121 141-270 433-565 (588)
101 PRK08155 acetolactate synthase 99.5 8.6E-14 1.9E-18 146.3 13.3 115 142-268 418-544 (564)
102 TIGR03457 sulphoacet_xsc sulfo 99.5 8.3E-14 1.8E-18 146.9 13.2 118 142-268 429-558 (579)
103 cd02018 TPP_PFOR Thiamine pyro 99.5 4.6E-14 1E-18 132.7 10.0 119 141-266 62-202 (237)
104 PRK08527 acetolactate synthase 99.5 1E-13 2.2E-18 145.8 13.6 115 142-268 413-539 (563)
105 PRK08273 thiamine pyrophosphat 99.5 9.3E-14 2E-18 147.0 13.3 117 141-268 413-547 (597)
106 PRK08322 acetolactate synthase 99.5 7.9E-14 1.7E-18 146.0 12.6 116 141-268 404-529 (547)
107 CHL00099 ilvB acetohydroxyacid 99.5 1.1E-13 2.3E-18 146.2 13.6 116 141-268 428-556 (585)
108 PRK05778 2-oxoglutarate ferred 99.5 1.4E-13 3.1E-18 133.2 13.2 136 143-291 70-224 (301)
109 PRK09628 oorB 2-oxoglutarate-a 99.5 7.9E-14 1.7E-18 133.6 11.3 114 143-267 68-201 (277)
110 TIGR00118 acolac_lg acetolacta 99.5 7.8E-14 1.7E-18 146.4 11.9 115 142-268 411-537 (558)
111 PRK06048 acetolactate synthase 99.5 1.5E-13 3.3E-18 144.4 13.7 115 142-268 413-539 (561)
112 PRK08611 pyruvate oxidase; Pro 99.5 1.1E-13 2.5E-18 145.7 12.5 115 142-268 407-531 (576)
113 PLN02470 acetolactate synthase 99.5 1.7E-13 3.8E-18 144.6 13.7 115 142-268 425-558 (585)
114 TIGR03394 indol_phenyl_DC indo 99.5 1E-13 2.3E-18 144.8 11.6 114 141-266 401-520 (535)
115 PRK06456 acetolactate synthase 99.5 1.5E-13 3.3E-18 144.6 12.9 116 141-268 419-546 (572)
116 PRK09259 putative oxalyl-CoA d 99.5 1.5E-13 3.2E-18 144.7 12.7 115 141-268 422-547 (569)
117 PRK08978 acetolactate synthase 99.5 2E-13 4.4E-18 143.0 13.3 115 142-268 400-526 (548)
118 COG2609 AceE Pyruvate dehydrog 99.5 5.6E-12 1.2E-16 129.8 23.1 268 35-317 74-435 (887)
119 PRK11869 2-oxoacid ferredoxin 99.5 3.6E-13 7.8E-18 129.0 11.4 115 143-267 60-193 (280)
120 PRK06276 acetolactate synthase 99.5 4.1E-13 8.9E-18 141.8 12.8 115 142-268 418-544 (586)
121 PRK07282 acetolactate synthase 99.5 2.4E-13 5.3E-18 143.0 10.9 115 141-268 416-542 (566)
122 PRK07789 acetolactate synthase 99.5 2.3E-13 4.9E-18 144.5 10.4 116 142-268 446-577 (612)
123 TIGR02177 PorB_KorB 2-oxoacid: 99.4 2.1E-12 4.6E-17 124.1 15.4 113 143-266 53-185 (287)
124 PRK07449 2-succinyl-5-enolpyru 99.4 2.5E-13 5.5E-18 142.9 8.9 112 142-266 424-548 (568)
125 PRK11866 2-oxoacid ferredoxin 99.4 1.6E-12 3.5E-17 124.6 12.5 115 142-266 58-191 (279)
126 PRK11867 2-oxoglutarate ferred 99.4 1.6E-12 3.4E-17 125.3 12.3 115 142-266 68-201 (286)
127 TIGR03336 IOR_alpha indolepyru 99.3 1.2E-11 2.6E-16 130.9 13.5 119 139-266 399-529 (595)
128 COG3961 Pyruvate decarboxylase 99.3 1.6E-11 3.4E-16 123.6 13.0 165 71-268 363-536 (557)
129 PRK11865 pyruvate ferredoxin o 99.3 5.4E-11 1.2E-15 114.9 14.3 130 136-270 62-214 (299)
130 PF09364 XFP_N: XFP N-terminal 99.2 4.7E-11 1E-15 116.0 9.2 170 64-250 47-248 (379)
131 PLN02980 2-oxoglutarate decarb 99.2 4E-11 8.7E-16 139.3 10.1 116 140-268 756-890 (1655)
132 KOG1185 Thiamine pyrophosphate 99.2 2.2E-10 4.7E-15 114.4 12.4 119 139-268 426-561 (571)
133 KOG4166 Thiamine pyrophosphate 98.9 1.8E-09 4E-14 106.2 8.2 116 141-268 522-648 (675)
134 COG3960 Glyoxylate carboligase 98.9 2.4E-09 5.1E-14 102.8 8.1 159 109-275 377-564 (592)
135 KOG1184 Thiamine pyrophosphate 98.9 9.9E-09 2.1E-13 103.4 12.6 120 139-266 411-538 (561)
136 COG3962 Acetolactate synthase 98.7 1.3E-07 2.8E-12 94.4 11.6 115 142-268 443-576 (617)
137 COG3957 Phosphoketolase [Carbo 98.5 5.2E-07 1.1E-11 94.0 10.0 168 64-246 60-257 (793)
138 COG1013 PorB Pyruvate:ferredox 98.5 7E-06 1.5E-10 79.5 16.3 149 141-303 68-237 (294)
139 COG4231 Indolepyruvate ferredo 98.0 2.3E-05 4.9E-10 81.6 8.8 118 137-265 422-552 (640)
140 COG1165 MenD 2-succinyl-6-hydr 97.7 0.00014 3E-09 74.9 8.9 108 148-268 427-547 (566)
141 cd03377 TPP_PFOR_PNO Thiamine 97.3 0.0017 3.8E-08 64.4 10.8 98 166-269 152-269 (365)
142 cd06586 TPP_enzyme_PYR Pyrimid 96.9 0.016 3.4E-07 50.0 11.9 104 149-264 48-152 (154)
143 cd07039 TPP_PYR_POX Pyrimidine 96.9 0.015 3.3E-07 51.5 11.9 106 150-265 52-157 (164)
144 cd07035 TPP_PYR_POX_like Pyrim 96.9 0.016 3.5E-07 50.4 11.3 106 149-264 47-153 (155)
145 PRK13030 2-oxoacid ferredoxin 96.8 0.0076 1.6E-07 68.2 10.7 114 141-264 466-600 (1159)
146 TIGR03845 sulfopyru_alph sulfo 96.7 0.029 6.2E-07 49.5 11.7 108 146-265 44-153 (157)
147 TIGR02176 pyruv_ox_red pyruvat 96.7 0.016 3.5E-07 66.1 12.4 98 166-269 952-1069(1165)
148 cd07034 TPP_PYR_PFOR_IOR-alpha 96.5 0.021 4.5E-07 50.0 9.8 105 149-264 54-158 (160)
149 PF02776 TPP_enzyme_N: Thiamin 96.5 0.021 4.5E-07 50.8 9.8 108 149-265 52-160 (172)
150 PRK09193 indolepyruvate ferred 96.5 0.014 3E-07 66.0 10.3 119 140-264 478-614 (1165)
151 cd07038 TPP_PYR_PDC_IPDC_like 96.5 0.042 9.1E-07 48.6 11.3 107 149-264 48-160 (162)
152 PRK13029 2-oxoacid ferredoxin 95.8 0.047 1E-06 61.8 10.2 118 141-264 493-628 (1186)
153 cd07037 TPP_PYR_MenD Pyrimidin 95.6 0.084 1.8E-06 46.8 9.1 107 149-265 48-161 (162)
154 PRK08611 pyruvate oxidase; Pro 94.8 0.26 5.6E-06 52.4 11.5 108 149-266 56-163 (576)
155 TIGR03254 oxalate_oxc oxalyl-C 94.8 0.25 5.5E-06 52.1 11.3 109 150-266 54-163 (554)
156 cd07033 TPP_PYR_DXS_TK_like Py 94.7 0.27 5.8E-06 43.1 9.6 100 148-264 51-154 (156)
157 PRK08659 2-oxoglutarate ferred 94.7 0.22 4.7E-06 50.2 9.9 117 148-275 60-178 (376)
158 COG0028 IlvB Thiamine pyrophos 94.7 0.26 5.7E-06 52.1 11.0 108 149-266 52-160 (550)
159 PRK07119 2-ketoisovalerate fer 94.6 0.38 8.3E-06 48.0 11.4 111 148-275 60-178 (352)
160 TIGR03297 Ppyr-DeCO2ase phosph 94.6 0.15 3.3E-06 51.0 8.5 113 144-265 34-151 (361)
161 PRK07525 sulfoacetaldehyde ace 94.6 0.33 7.1E-06 51.7 11.6 107 150-266 57-163 (588)
162 PRK07524 hypothetical protein; 94.2 0.42 9.2E-06 50.2 11.5 110 149-266 52-163 (535)
163 PRK09259 putative oxalyl-CoA d 94.1 0.47 1E-05 50.3 11.6 109 150-266 61-170 (569)
164 PRK06457 pyruvate dehydrogenas 94.1 0.46 1E-05 50.1 11.4 107 150-266 53-159 (549)
165 PRK07064 hypothetical protein; 94.0 0.53 1.1E-05 49.5 11.6 109 150-266 55-165 (544)
166 TIGR03457 sulphoacet_xsc sulfo 94.0 0.42 9.2E-06 50.7 11.0 107 150-266 53-159 (579)
167 PRK06112 acetolactate synthase 93.9 0.5 1.1E-05 50.2 11.3 107 150-266 63-170 (578)
168 PRK07979 acetolactate synthase 93.9 0.46 9.9E-06 50.4 10.9 108 150-267 56-164 (574)
169 PRK06456 acetolactate synthase 93.8 0.5 1.1E-05 50.1 11.0 108 149-266 56-164 (572)
170 PRK08266 hypothetical protein; 93.8 0.56 1.2E-05 49.3 11.3 110 150-267 57-168 (542)
171 PRK08366 vorA 2-ketoisovalerat 93.8 0.55 1.2E-05 47.6 10.7 113 148-274 61-173 (390)
172 PRK06276 acetolactate synthase 93.7 0.59 1.3E-05 49.7 11.4 108 149-266 51-159 (586)
173 PRK07418 acetolactate synthase 93.7 0.63 1.4E-05 49.8 11.6 108 149-266 73-181 (616)
174 PRK08322 acetolactate synthase 93.6 0.61 1.3E-05 49.1 11.3 108 149-266 51-159 (547)
175 PRK11269 glyoxylate carboligas 93.6 0.63 1.4E-05 49.6 11.5 108 150-266 56-164 (591)
176 PRK08273 thiamine pyrophosphat 93.6 0.49 1.1E-05 50.5 10.6 108 150-267 56-164 (597)
177 PF01855 POR_N: Pyruvate flavo 93.6 0.16 3.5E-06 47.7 6.1 112 149-274 49-161 (230)
178 PRK06725 acetolactate synthase 93.5 0.54 1.2E-05 49.9 10.7 108 149-266 65-173 (570)
179 PRK06466 acetolactate synthase 93.5 0.57 1.2E-05 49.7 10.8 108 150-267 56-164 (574)
180 PRK07586 hypothetical protein; 93.5 0.56 1.2E-05 49.0 10.6 109 149-267 52-161 (514)
181 PRK07789 acetolactate synthase 93.5 0.64 1.4E-05 49.8 11.2 108 149-266 82-190 (612)
182 PLN02470 acetolactate synthase 93.4 0.62 1.3E-05 49.6 11.0 108 149-266 64-172 (585)
183 TIGR01504 glyox_carbo_lig glyo 93.4 0.62 1.3E-05 49.7 10.9 109 150-267 55-164 (588)
184 PRK07710 acetolactate synthase 93.3 0.62 1.3E-05 49.4 10.7 108 149-266 66-174 (571)
185 PRK08978 acetolactate synthase 93.2 0.56 1.2E-05 49.4 10.2 108 149-266 51-159 (548)
186 TIGR00118 acolac_lg acetolacta 93.2 0.68 1.5E-05 48.9 10.8 107 150-266 53-160 (558)
187 PRK12474 hypothetical protein; 93.0 0.83 1.8E-05 47.8 11.0 108 150-267 57-165 (518)
188 PRK09107 acetolactate synthase 92.9 0.74 1.6E-05 49.1 10.7 108 149-266 62-170 (595)
189 cd07036 TPP_PYR_E1-PDHc-beta_l 92.9 0.72 1.6E-05 41.1 8.9 99 148-263 56-164 (167)
190 TIGR03394 indol_phenyl_DC indo 92.8 0.76 1.6E-05 48.4 10.5 109 151-267 53-165 (535)
191 PRK08155 acetolactate synthase 92.8 0.86 1.9E-05 48.2 10.9 108 149-266 64-172 (564)
192 PRK06965 acetolactate synthase 92.8 0.99 2.2E-05 48.1 11.4 108 150-267 73-181 (587)
193 PRK08979 acetolactate synthase 92.7 0.87 1.9E-05 48.3 10.8 108 149-266 55-163 (572)
194 PF02779 Transket_pyr: Transke 92.7 1.4 3E-05 39.3 10.6 108 148-264 60-170 (178)
195 TIGR02720 pyruv_oxi_spxB pyruv 92.7 1.1 2.4E-05 47.6 11.5 107 151-267 53-159 (575)
196 PRK08199 thiamine pyrophosphat 92.6 1 2.2E-05 47.7 11.1 108 149-266 59-167 (557)
197 PRK06882 acetolactate synthase 92.6 0.94 2E-05 48.0 10.9 108 150-267 56-164 (574)
198 TIGR00204 dxs 1-deoxy-D-xylulo 92.4 0.79 1.7E-05 49.2 10.1 103 148-264 364-467 (617)
199 PRK06048 acetolactate synthase 92.4 1 2.2E-05 47.6 10.8 108 149-266 58-166 (561)
200 PRK09627 oorA 2-oxoglutarate-a 92.4 0.71 1.5E-05 46.5 9.0 115 149-275 60-177 (375)
201 PRK07282 acetolactate synthase 92.1 1 2.3E-05 47.7 10.5 108 149-266 61-169 (566)
202 PRK08367 porA pyruvate ferredo 92.1 1.1 2.3E-05 45.6 10.0 113 148-274 62-176 (394)
203 PRK05858 hypothetical protein; 92.0 1.3 2.8E-05 46.7 11.0 108 149-266 55-163 (542)
204 PRK08327 acetolactate synthase 91.9 0.86 1.9E-05 48.3 9.6 109 150-266 64-180 (569)
205 TIGR02418 acolac_catab acetola 91.9 1.4 3E-05 46.3 11.1 107 151-267 51-158 (539)
206 PRK08527 acetolactate synthase 91.8 1.4 3.1E-05 46.6 11.0 108 149-266 54-162 (563)
207 TIGR03710 OAFO_sf 2-oxoacid:ac 91.8 0.74 1.6E-05 48.9 8.8 109 149-268 250-362 (562)
208 PRK08617 acetolactate synthase 91.6 1.5 3.3E-05 46.2 10.9 107 150-266 56-163 (552)
209 PRK09622 porA pyruvate flavodo 91.5 1.3 2.9E-05 45.1 10.0 111 149-273 69-181 (407)
210 CHL00099 ilvB acetohydroxyacid 91.2 1.6 3.5E-05 46.4 10.8 107 150-266 65-172 (585)
211 KOG4166 Thiamine pyrophosphate 91.2 1.2 2.5E-05 45.3 8.8 149 104-264 90-248 (675)
212 PLN02683 pyruvate dehydrogenas 90.7 2.2 4.7E-05 42.7 10.5 101 147-264 85-195 (356)
213 PRK09124 pyruvate dehydrogenas 90.6 2.1 4.5E-05 45.5 10.9 106 150-265 55-160 (574)
214 PLN02573 pyruvate decarboxylas 90.4 2.1 4.5E-05 45.6 10.6 109 150-267 68-182 (578)
215 PRK12571 1-deoxy-D-xylulose-5- 90.4 1.6 3.4E-05 47.2 9.7 102 149-265 374-477 (641)
216 TIGR00232 tktlase_bact transke 90.3 1.7 3.7E-05 47.1 9.9 101 149-264 409-512 (653)
217 PRK06154 hypothetical protein; 90.2 2.5 5.4E-05 44.9 11.0 93 166-267 83-176 (565)
218 PRK06546 pyruvate dehydrogenas 90.1 2.2 4.8E-05 45.3 10.6 107 150-266 55-161 (578)
219 PRK05444 1-deoxy-D-xylulose-5- 90.1 1.7 3.8E-05 46.2 9.8 101 149-264 334-436 (580)
220 PRK11892 pyruvate dehydrogenas 90.0 2.2 4.7E-05 44.2 10.1 99 148-263 201-309 (464)
221 PRK07092 benzoylformate decarb 89.9 2.4 5.1E-05 44.6 10.5 108 150-266 62-170 (530)
222 PLN02234 1-deoxy-D-xylulose-5- 89.8 1.8 3.9E-05 46.6 9.6 100 149-262 412-512 (641)
223 PRK05899 transketolase; Review 89.8 1.7 3.8E-05 46.7 9.6 103 148-264 379-483 (624)
224 PTZ00089 transketolase; Provis 89.3 2.5 5.3E-05 45.9 10.3 101 149-264 416-519 (661)
225 PLN02582 1-deoxy-D-xylulose-5- 89.2 2.4 5.2E-05 46.0 10.0 103 148-264 410-513 (677)
226 TIGR00173 menD 2-succinyl-5-en 89.2 1.4 3E-05 45.1 7.9 107 150-266 52-165 (432)
227 PRK12315 1-deoxy-D-xylulose-5- 88.6 2.2 4.7E-05 45.6 9.1 103 148-264 332-434 (581)
228 PLN02225 1-deoxy-D-xylulose-5- 88.4 2.9 6.4E-05 45.4 9.9 103 148-264 435-538 (701)
229 cd01460 vWA_midasin VWA_Midasi 88.2 7 0.00015 37.5 11.4 84 167-251 166-257 (266)
230 TIGR03336 IOR_alpha indolepyru 87.6 3.4 7.4E-05 44.2 9.9 109 149-274 59-169 (595)
231 COG4032 Predicted thiamine-pyr 87.6 2.6 5.7E-05 36.5 7.1 107 147-264 53-161 (172)
232 PTZ00182 3-methyl-2-oxobutanat 87.0 4.8 0.0001 40.3 10.0 99 148-263 94-202 (355)
233 PRK12754 transketolase; Review 86.7 3.3 7.2E-05 44.9 9.2 104 149-264 415-518 (663)
234 COG0021 TktA Transketolase [Ca 86.4 2.4 5.1E-05 45.2 7.6 78 182-264 441-518 (663)
235 PRK09212 pyruvate dehydrogenas 86.2 6.1 0.00013 39.0 10.2 105 148-268 63-176 (327)
236 PLN02790 transketolase 85.7 5.1 0.00011 43.4 10.1 99 149-264 405-509 (654)
237 PRK12753 transketolase; Review 85.5 5.1 0.00011 43.5 9.9 104 148-264 414-518 (663)
238 COG0674 PorA Pyruvate:ferredox 85.2 6.3 0.00014 39.6 9.8 111 147-270 58-169 (365)
239 PLN02980 2-oxoglutarate decarb 84.1 3.8 8.1E-05 49.1 8.8 106 150-265 353-465 (1655)
240 CHL00144 odpB pyruvate dehydro 81.5 12 0.00026 37.0 10.0 99 148-263 63-171 (327)
241 TIGR03393 indolpyr_decarb indo 77.8 15 0.00033 38.6 10.0 108 149-267 52-166 (539)
242 COG3958 Transketolase, C-termi 77.1 12 0.00027 36.2 8.1 102 148-263 61-164 (312)
243 smart00861 Transket_pyr Transk 74.6 26 0.00056 30.6 9.2 100 149-264 62-164 (168)
244 COG1154 Dxs Deoxyxylulose-5-ph 70.5 21 0.00046 38.0 8.6 103 148-263 368-472 (627)
245 COG1240 ChlD Mg-chelatase subu 69.2 34 0.00073 32.7 8.9 98 144-248 155-258 (261)
246 COG1107 Archaea-specific RecJ- 68.0 8 0.00017 40.8 4.8 54 181-243 403-458 (715)
247 PF09851 SHOCT: Short C-termin 66.1 9.4 0.0002 24.0 3.2 27 296-323 4-30 (31)
248 PF04273 DUF442: Putative phos 64.3 16 0.00036 30.1 5.2 47 217-266 46-95 (110)
249 PF13519 VWA_2: von Willebrand 61.5 37 0.00081 28.6 7.3 73 165-248 99-171 (172)
250 cd01453 vWA_transcription_fact 59.0 78 0.0017 28.2 9.1 71 165-249 107-178 (183)
251 PRK07449 2-succinyl-5-enolpyru 58.6 37 0.0008 35.9 8.0 48 149-202 60-107 (568)
252 COG0191 Fba Fructose/tagatose 58.4 90 0.0019 30.3 9.7 113 164-290 41-164 (286)
253 COG1303 Uncharacterized protei 56.6 29 0.00062 30.7 5.5 46 218-266 21-66 (179)
254 PRK11032 hypothetical protein; 56.1 39 0.00086 29.9 6.4 49 297-345 30-78 (160)
255 TIGR02176 pyruv_ox_red pyruvat 56.0 81 0.0018 36.7 10.6 112 149-273 64-175 (1165)
256 cd01451 vWA_Magnesium_chelatas 54.5 1.3E+02 0.0027 26.4 9.6 72 166-246 99-176 (178)
257 TIGR00239 2oxo_dh_E1 2-oxoglut 52.3 96 0.0021 35.2 10.1 109 146-264 657-772 (929)
258 PF01380 SIS: SIS domain SIS d 51.1 49 0.0011 26.9 6.1 57 144-202 10-89 (131)
259 PRK13685 hypothetical protein; 45.9 2.2E+02 0.0047 27.8 10.7 82 166-249 194-286 (326)
260 cd00640 Trp-synth-beta_II Tryp 43.7 2E+02 0.0043 26.5 9.6 38 188-237 68-105 (244)
261 PRK09404 sucA 2-oxoglutarate d 41.9 1.8E+02 0.0038 33.1 10.1 107 146-264 655-770 (924)
262 PRK00945 acetyl-CoA decarbonyl 41.8 1.7E+02 0.0036 26.2 8.2 37 165-201 34-71 (171)
263 TIGR03186 AKGDH_not_PDH alpha- 41.2 1.9E+02 0.0041 32.7 10.1 123 136-264 559-688 (889)
264 PRK10490 sensor protein KdpD; 39.1 1.1E+02 0.0024 34.5 8.2 74 166-241 252-326 (895)
265 cd05014 SIS_Kpsf KpsF-like pro 39.0 1.3E+02 0.0028 24.4 6.8 19 219-237 65-83 (128)
266 PRK00278 trpC indole-3-glycero 38.8 2.2E+02 0.0048 27.0 9.2 96 156-267 74-170 (260)
267 COG0075 Serine-pyruvate aminot 38.8 3.6E+02 0.0079 27.3 11.0 64 165-247 55-127 (383)
268 PF07295 DUF1451: Protein of u 38.0 67 0.0015 28.0 5.0 41 295-335 18-58 (146)
269 PRK13406 bchD magnesium chelat 37.6 2.8E+02 0.006 29.8 10.5 95 144-249 471-582 (584)
270 PRK05772 translation initiatio 37.5 1.8E+02 0.0039 29.3 8.5 117 141-271 175-294 (363)
271 cd08325 CARD_CASP1-like Caspas 37.0 61 0.0013 25.2 4.2 39 294-332 15-53 (83)
272 PRK13683 hypothetical protein; 36.6 63 0.0014 25.5 4.0 38 229-270 15-52 (87)
273 COG0108 RibB 3,4-dihydroxy-2-b 36.5 1.2E+02 0.0026 27.9 6.5 70 161-235 120-192 (203)
274 cd08323 CARD_APAF1 Caspase act 36.3 40 0.00086 26.6 3.0 27 297-323 16-42 (86)
275 KOG1184 Thiamine pyrophosphate 35.2 1.2E+02 0.0026 32.0 6.9 97 166-267 68-170 (561)
276 PF14399 Transpep_BrtH: NlpC/p 35.0 2.2E+02 0.0048 27.2 8.7 44 220-267 55-98 (317)
277 COG2205 KdpD Osmosensitive K+ 34.6 1.2E+02 0.0026 33.8 7.2 76 165-241 249-324 (890)
278 PRK09195 gatY tagatose-bisphos 33.6 4.5E+02 0.0098 25.4 11.7 113 165-291 42-164 (284)
279 smart00115 CASc Caspase, inter 32.9 1.4E+02 0.0031 27.8 6.8 69 195-264 9-79 (241)
280 cd08326 CARD_CASP9 Caspase act 32.5 49 0.0011 25.9 2.9 25 298-322 19-43 (84)
281 cd05008 SIS_GlmS_GlmD_1 SIS (S 32.2 1.8E+02 0.0039 23.5 6.6 18 220-237 65-82 (126)
282 PRK06381 threonine synthase; V 31.4 3.7E+02 0.0079 26.0 9.6 57 188-261 81-137 (319)
283 cd08327 CARD_RAIDD Caspase act 31.2 51 0.0011 26.5 2.9 24 299-322 25-48 (94)
284 cd01987 USP_OKCHK USP domain i 30.7 2.4E+02 0.0052 22.4 7.1 63 177-239 11-73 (124)
285 PRK07998 gatY putative fructos 30.5 5.1E+02 0.011 25.1 10.7 113 165-291 42-162 (283)
286 cd08330 CARD_ASC_NALP1 Caspase 29.9 60 0.0013 25.2 3.1 27 296-322 16-42 (82)
287 COG2515 Acd 1-aminocyclopropan 29.9 3.3E+02 0.0072 26.8 8.6 108 166-291 64-175 (323)
288 cd05009 SIS_GlmS_GlmD_2 SIS (S 29.4 1.4E+02 0.0031 24.9 5.7 38 165-203 62-99 (153)
289 PF06945 DUF1289: Protein of u 29.1 87 0.0019 22.0 3.5 12 281-292 21-32 (51)
290 PF06833 MdcE: Malonate decarb 29.1 4E+02 0.0086 25.2 8.8 76 165-263 28-111 (234)
291 PRK13010 purU formyltetrahydro 29.1 2.7E+02 0.0059 27.0 8.1 54 164-236 93-149 (289)
292 PF10925 DUF2680: Protein of u 28.9 1.9E+02 0.0041 21.1 5.3 30 300-329 23-52 (59)
293 PRK05647 purN phosphoribosylgl 28.8 3.1E+02 0.0066 25.0 8.0 54 166-236 3-59 (200)
294 cd02991 UAS_ETEA UAS family, E 28.6 3.3E+02 0.0072 22.4 8.3 82 178-265 2-84 (116)
295 COG1424 BioW Pimeloyl-CoA synt 28.2 2.7E+02 0.0058 25.6 7.2 76 182-266 154-238 (239)
296 PF10415 FumaraseC_C: Fumarase 28.2 66 0.0014 23.1 2.8 19 300-318 28-46 (55)
297 PLN02331 phosphoribosylglycina 28.1 4.7E+02 0.01 24.0 9.7 53 167-236 2-57 (207)
298 cd08329 CARD_BIRC2_BIRC3 Caspa 28.0 75 0.0016 25.4 3.4 36 295-331 23-58 (94)
299 PRK06731 flhF flagellar biosyn 27.9 5.4E+02 0.012 24.6 10.5 74 166-249 75-149 (270)
300 PF08312 cwf21: cwf21 domain; 27.9 1.5E+02 0.0032 20.5 4.4 30 298-328 14-43 (46)
301 cd08332 CARD_CASP2 Caspase act 27.4 79 0.0017 25.0 3.4 25 297-321 22-46 (90)
302 PF01738 DLH: Dienelactone hyd 27.0 3.3E+02 0.0072 24.3 8.0 54 142-201 100-153 (218)
303 COG1334 FlaG Uncharacterized f 26.9 73 0.0016 26.8 3.2 37 7-47 74-110 (120)
304 PLN02618 tryptophan synthase, 26.7 5E+02 0.011 26.6 9.8 70 152-235 107-176 (410)
305 COG0044 PyrC Dihydroorotase an 26.6 2.4E+02 0.0051 29.1 7.5 94 168-266 144-256 (430)
306 cd08785 CARD_CARD9-like Caspas 26.3 68 0.0015 25.3 2.8 27 297-323 18-44 (86)
307 KOG1201 Hydroxysteroid 17-beta 26.3 6.3E+02 0.014 24.8 10.7 116 151-289 23-140 (300)
308 PRK12738 kbaY tagatose-bisphos 26.3 6.1E+02 0.013 24.6 11.7 113 165-291 42-164 (286)
309 PF06570 DUF1129: Protein of u 25.3 1.1E+02 0.0024 27.8 4.5 38 293-331 6-43 (206)
310 cd00032 CASc Caspase, interleu 25.3 1.8E+02 0.004 27.0 6.1 69 195-264 10-80 (243)
311 PRK08452 flagellar protein Fla 25.0 80 0.0017 26.7 3.2 41 2-48 74-115 (124)
312 PF02520 DUF148: Domain of unk 25.0 1.2E+02 0.0026 24.8 4.2 36 340-375 65-100 (113)
313 TIGR00512 salvage_mtnA S-methy 24.6 5E+02 0.011 25.7 9.2 116 142-271 156-273 (331)
314 KOG0369 Pyruvate carboxylase [ 24.6 1.9E+02 0.0042 31.6 6.4 32 167-200 160-191 (1176)
315 PF00926 DHBP_synthase: 3,4-di 24.5 1.2E+02 0.0025 27.8 4.3 68 163-235 118-188 (194)
316 PRK08558 adenine phosphoribosy 24.4 5.9E+02 0.013 23.8 9.5 101 149-256 95-202 (238)
317 PLN02522 ATP citrate (pro-S)-l 24.4 3.3E+02 0.0072 29.4 8.3 86 164-255 221-319 (608)
318 TIGR02442 Cob-chelat-sub cobal 24.3 2.8E+02 0.006 30.0 7.9 80 146-234 538-632 (633)
319 cd01561 CBS_like CBS_like: Thi 24.3 6.2E+02 0.013 24.0 10.0 39 188-238 71-109 (291)
320 PF06506 PrpR_N: Propionate ca 24.2 1.5E+02 0.0033 26.1 5.1 84 166-254 77-168 (176)
321 TIGR00506 ribB 3,4-dihydroxy-2 24.2 2.1E+02 0.0046 26.2 6.0 69 162-235 122-193 (199)
322 TIGR00515 accD acetyl-CoA carb 24.1 1.4E+02 0.0031 28.9 5.2 24 184-207 146-169 (285)
323 PF00140 Sigma70_r1_2: Sigma-7 24.1 1.4E+02 0.003 19.4 3.5 35 295-329 2-36 (37)
324 PRK06027 purU formyltetrahydro 24.0 4.8E+02 0.01 25.1 8.8 54 164-236 89-145 (286)
325 PRK08610 fructose-bisphosphate 23.9 6.7E+02 0.015 24.3 12.3 113 165-291 42-165 (286)
326 TIGR03590 PseG pseudaminic aci 23.9 4.4E+02 0.0095 25.0 8.5 20 220-239 72-91 (279)
327 smart00114 CARD Caspase recrui 23.8 67 0.0015 24.9 2.4 26 299-324 24-49 (88)
328 cd05710 SIS_1 A subgroup of th 23.3 1.8E+02 0.004 23.7 5.1 40 163-204 46-85 (120)
329 PRK07668 hypothetical protein; 23.2 1.3E+02 0.0028 28.8 4.5 39 293-332 6-44 (254)
330 cd01671 CARD Caspase activatio 23.1 1.1E+02 0.0023 22.9 3.4 29 295-323 13-41 (80)
331 PF09999 DUF2240: Uncharacteri 23.1 3.8E+02 0.0083 23.3 7.1 80 238-327 35-117 (144)
332 PLN03013 cysteine synthase 23.1 3.9E+02 0.0085 27.5 8.3 38 188-237 193-230 (429)
333 TIGR02482 PFKA_ATP 6-phosphofr 23.1 1.7E+02 0.0037 28.6 5.5 36 166-206 93-131 (301)
334 PF00205 TPP_enzyme_M: Thiamin 23.0 48 0.001 27.7 1.5 34 165-198 11-44 (137)
335 TIGR00315 cdhB CO dehydrogenas 22.9 1.3E+02 0.0029 26.6 4.3 38 165-202 27-64 (162)
336 TIGR01415 trpB_rel pyridoxal-p 22.7 7.5E+02 0.016 25.3 10.3 45 185-238 132-177 (419)
337 cd01467 vWA_BatA_type VWA BatA 22.7 4.9E+02 0.011 22.2 8.4 39 165-203 102-142 (180)
338 PRK10886 DnaA initiator-associ 22.6 2.9E+02 0.0062 25.1 6.6 18 220-237 128-145 (196)
339 PRK00910 ribB 3,4-dihydroxy-2- 22.5 2.6E+02 0.0057 26.0 6.3 66 163-235 134-204 (218)
340 TIGR01204 bioW 6-carboxyhexano 22.4 3E+02 0.0065 25.9 6.6 74 181-263 150-232 (232)
341 PF03646 FlaG: FlaG protein; 22.3 36 0.00077 27.6 0.5 35 10-49 65-100 (107)
342 PF03437 BtpA: BtpA family; I 22.1 3.1E+02 0.0067 26.2 6.9 84 152-237 95-181 (254)
343 TIGR01323 nitrile_alph nitrile 22.0 1.3E+02 0.0027 27.2 3.9 28 298-325 4-31 (185)
344 PRK13028 tryptophan synthase s 22.0 4.8E+02 0.01 26.6 8.7 71 151-235 97-167 (402)
345 TIGR03127 RuMP_HxlB 6-phospho 21.9 3.3E+02 0.0071 23.7 6.8 19 219-237 90-108 (179)
346 PRK01792 ribB 3,4-dihydroxy-2- 21.9 2.9E+02 0.0064 25.6 6.5 67 162-235 132-203 (214)
347 PRK06988 putative formyltransf 21.8 4E+02 0.0087 26.0 7.9 59 168-235 4-62 (312)
348 COG0498 ThrC Threonine synthas 21.8 4.4E+02 0.0096 27.0 8.3 69 165-251 127-195 (411)
349 cd01822 Lysophospholipase_L1_l 21.8 2.6E+02 0.0057 23.7 6.0 23 238-260 82-104 (177)
350 PF04748 Polysacc_deac_2: Dive 21.7 3.1E+02 0.0068 25.2 6.7 46 220-266 133-183 (213)
351 cd08810 CARD_BCL10 Caspase act 21.7 1.1E+02 0.0024 24.0 3.2 26 297-322 18-43 (84)
352 PF01116 F_bP_aldolase: Fructo 21.7 7.4E+02 0.016 23.9 10.7 124 151-290 29-163 (287)
353 PF02211 NHase_beta: Nitrile h 21.5 1.3E+02 0.0029 28.1 4.2 26 287-318 69-94 (222)
354 PF10566 Glyco_hydro_97: Glyco 21.3 2.4E+02 0.0053 27.2 6.0 55 179-235 72-126 (273)
355 PF13899 Thioredoxin_7: Thiore 21.2 85 0.0018 23.7 2.4 19 247-265 7-25 (82)
356 KOG0524 Pyruvate dehydrogenase 21.0 4.8E+02 0.01 25.4 7.8 23 72-94 37-59 (359)
357 PRK04346 tryptophan synthase s 20.7 5.4E+02 0.012 26.1 8.7 71 151-235 93-163 (397)
358 PF04695 Pex14_N: Peroxisomal 20.6 1.6E+02 0.0034 25.2 4.2 32 294-326 20-51 (136)
359 TIGR00655 PurU formyltetrahydr 20.5 7.7E+02 0.017 23.7 9.7 54 164-236 84-140 (280)
360 PF00619 CARD: Caspase recruit 20.5 1.4E+02 0.003 22.5 3.6 25 296-320 17-41 (85)
361 PRK08329 threonine synthase; V 20.4 3.9E+02 0.0085 26.4 7.6 38 188-237 122-159 (347)
362 cd01452 VWA_26S_proteasome_sub 20.4 2.1E+02 0.0045 25.9 5.1 35 166-200 108-143 (187)
363 PRK01322 6-carboxyhexanoate--C 20.3 3.8E+02 0.0082 25.4 6.9 76 181-265 157-241 (242)
364 PF05014 Nuc_deoxyrib_tr: Nucl 20.1 1.7E+02 0.0037 23.6 4.2 39 166-205 63-101 (113)
365 PRK00124 hypothetical protein; 20.0 1.8E+02 0.004 25.4 4.5 35 169-206 3-37 (151)
No 1
>COG1071 AcoA Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit [Energy production and conversion]
Probab=100.00 E-value=3.3e-93 Score=691.09 Aligned_cols=351 Identities=38% Similarity=0.656 Sum_probs=336.7
Q ss_pred CeeEeeCCCCCCCCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc-cccccchhHHHHHHHHhcCCCC-c
Q 016909 13 PCYRVLDDDGQPFPDSSFV--KVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRIS-FYLTTSGEEAINIASAAAIKND-D 88 (380)
Q Consensus 13 ~~~~~~~~~g~~~~~~~~~--~~~~~~l~~~y~~M~~~R~~e~~~~~~~~~g~i~-~~~~~~GqEa~~~~~~~~l~~~-D 88 (380)
+.+++++.+|..+.+.... .+++++++++|++|+++|.||+++..++++|+++ |+|+++||||+++|++.+|+++ |
T Consensus 2 ~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~y~~M~l~R~fd~k~~~l~r~G~i~gf~~~~~GqEA~~vg~~~aL~~~~D 81 (358)
T COG1071 2 SLIRVLDEDGRAVDELPGPNAALSKEELLELYRLMLLIRRFDEKMLQLQRQGKIGGFYHLYIGQEAVQVGAAAALRPGED 81 (358)
T ss_pred CceeccCcccccccccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCcCCcccHHHHHHHHHHhcCCCCC
Confidence 5689999999988886444 7999999999999999999999999999999996 9999999999999999999965 9
Q ss_pred EEEccccchHHHHHcCCCHHHHHHHhhcCCCCCCCCCCCccccCCCCCCcccccccccCccHHHHHHHHHhhhcCCCc-e
Q 016909 89 FVVPQYREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDA-C 167 (380)
Q Consensus 89 ~v~~~yR~~~~~l~~G~~~~~~l~e~~g~~~~~~~G~~~~~H~~~~~~~~~~~~g~lG~~~p~AvG~A~A~k~~~~~~-~ 167 (380)
|++++||+|+++|++|+++.++|++++|+.+|+|+|+++++|++++..++++.++++|+|+|+|+|+|+|.|+++.+. +
T Consensus 82 ~i~~~YR~h~~~l~~G~~~~~~~a~~~G~~~g~~kGr~~~~h~~~~~~~~~~~~~iVg~Q~~~AaG~A~a~k~~~~~~~V 161 (358)
T COG1071 82 WIFPTYRDHGHLLARGVPLKEIMAELLGKATGPCKGRGGSMHYSDKEKGFLGGSGIVGTQIPLAAGAALALKYRGTKDGV 161 (358)
T ss_pred EeecccCccccceecCCCHHHHHHHHhccccCCCCCCCCcccccccccccCCCCceecccccHHHHHHHHHHHhCCCCcE
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999555 9
Q ss_pred eEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcceeeecccccCCcCHHHHHhhcCeeEEEEeCCCHHHHHHHHH
Q 016909 168 AVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVH 247 (380)
Q Consensus 168 vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~ 247 (380)
++|++|||+++||.|||+||||+.|+|||||+|+||+|+||++...++..+.++.++.+||+|+++|||||+.+|+++++
T Consensus 162 a~~~~GDGat~qG~FhEalN~A~v~klPvvf~ieNN~yAiSvp~~~q~~~~~~~~ra~aygipgv~VDG~D~~avy~~~~ 241 (358)
T COG1071 162 AVAFFGDGATNQGDFHEALNFAAVWKLPVVFVIENNQYAISVPRSRQTAAEIIAARAAAYGIPGVRVDGNDVLAVYEAAK 241 (358)
T ss_pred EEEEecCCccccchHHHHHHHHHHhcCCEEEEEecCCceeecchhhcccchhHHhhhhccCCCeEEECCcCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999888877777777789999999999999999999999999
Q ss_pred HHHHHhhccCCcEEEEEEeecCCCCCCCCCCCCCCChhHHHHHHhCCChHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
Q 016909 248 AAREMAIGEGRPILIEALTYRVGHHTTSDDSTKYRPVDEIEWWRTTQDPVTRFRKWIESNGWWNGDIESELRSSVRKQIL 327 (380)
Q Consensus 248 ~A~~~ar~~~gP~lIe~~t~R~~gHs~~Dd~~~Yr~~~e~~~~~~~~DPi~~~~~~L~~~g~~t~~~~~~i~~~~~~~v~ 327 (380)
+|++++|+++||+|||+.|||++|||++|||..||+++|+++|+ ++|||.+++++|++.|+||++++++|+++++++|+
T Consensus 242 ~A~e~AR~g~GPtLIE~~tYR~~~HS~sDd~~~YRskeE~~~~~-~~DPi~r~~~~L~~~g~~see~~~~i~~e~~~~V~ 320 (358)
T COG1071 242 EAVERARAGEGPTLIEAVTYRYGGHSTSDDPSKYRSKEEVEEWK-KRDPIVRLRKYLIEAGILSEEELEAIEAEAKAEVD 320 (358)
T ss_pred HHHHHHHcCCCCEEEEEEEeecCCCCCCCCccccCCHHHHHHHh-ccChHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998 59999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCCCCccccccccCCCccHHHHHHHHH
Q 016909 328 HALQEAEKAEKPPISDLFTDVYDVSPSNLREQEHSLR 364 (380)
Q Consensus 328 ~a~~~a~~~~~p~~~~~~~~vy~~~~~~~~~~~~~l~ 364 (380)
+|+++|+++|.|+++++|++||++.++.+.+|++.+.
T Consensus 321 ea~e~a~~~p~P~~~~~~~~Vy~~~~~~l~~q~~~~~ 357 (358)
T COG1071 321 EAVEFAEASPYPDVSELFEDVYAEGPPHLEEQREELE 357 (358)
T ss_pred HHHHHHHhCCCCChhHhhhcccccCChhHHHHHHhhc
Confidence 9999999999999999999999999999999987664
No 2
>KOG1182 consensus Branched chain alpha-keto acid dehydrogenase complex, alpha subunit [Energy production and conversion]
Probab=100.00 E-value=4.2e-84 Score=602.19 Aligned_cols=379 Identities=64% Similarity=1.081 Sum_probs=370.2
Q ss_pred CccccCCCCCCCCeeEeeCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccchhHHHHHHH
Q 016909 1 MRFISESSEERIPCYRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRISFYLTTSGEEAINIAS 80 (380)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~y~~M~~~R~~e~~~~~~~~~g~i~~~~~~~GqEa~~~~~ 80 (380)
|+||.+++...+|.|||+|.||.+++++..+.++.+..++||+.|++...+|..+.+.+|||+|+||+++.|+||+-+|.
T Consensus 51 l~fI~~~d~~~iPiYRV~d~~G~ii~~sqdp~~~ee~~~kmy~~M~~Ln~MD~IlYesQRQGRiSFYmT~~GEEa~higS 130 (432)
T KOG1182|consen 51 LEFIQPSDTPRIPIYRVMDADGQIIDKSQDPQLSEEVVLKMYKDMTLLNIMDRILYESQRQGRISFYMTNFGEEAIHIGS 130 (432)
T ss_pred eeecCcccCCCCceEEEecCCCcccCcccCCCcCHHHHHHHHHHHHHHHHHHHHHHHHhhcceEEEEEeccchhhhhhhh
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCCcEEEccccchHHHHHcCCCHHHHHHHhhcCCCCCCCCCCCccccCCCCCCcccccccccCccHHHHHHHHHhh
Q 016909 81 AAAIKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALK 160 (380)
Q Consensus 81 ~~~l~~~D~v~~~yR~~~~~l~~G~~~~~~l~e~~g~~~~~~~G~~~~~H~~~~~~~~~~~~g~lG~~~p~AvG~A~A~k 160 (380)
++||.+.|+|++.||..|+++.||+++++++.+++|+..+..+|++||+|+++++.+++..++++..++|.|+|+|+|.|
T Consensus 131 AAAL~p~Dli~gQYREaGVLlwRgftle~f~~qCyGn~~d~gkGrQMPvHyGs~elnf~tissplatqlpqAvGaaYa~k 210 (432)
T KOG1182|consen 131 AAALEPQDLIYGQYREAGVLLWRGFTLEEFMNQCYGNKSDLGKGRQMPVHYGSKELNFVTISSPLATQLPQAVGAAYALK 210 (432)
T ss_pred hhhCCcccccccccccCceEEEcCccHHHHHHHhcCCccccccccccccccCccccceEEecchhhhccchhhhhhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCC-ceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcceeeecccccCCcCHHHHHhhcCeeEEEEeCCCH
Q 016909 161 MDRKD-ACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDA 239 (380)
Q Consensus 161 ~~~~~-~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~G~~~~~VdG~D~ 239 (380)
++.++ ..+||++|||+.+||.+|.++|+|+..+.|+||+|-||+|+||||++++...+.++-+..+||+..++|||||+
T Consensus 211 ~~~~nnac~V~yfGdG~aSEGD~HA~~NfAAtle~Pvif~CRNNG~AISTptseQyr~DGIa~kG~aYGi~sIRVDGnD~ 290 (432)
T KOG1182|consen 211 MRKKNNACAVTYFGDGAASEGDAHAAFNFAATLECPVIFFCRNNGWAISTPTSEQYRGDGIAVKGPAYGIRSIRVDGNDA 290 (432)
T ss_pred hcccCCeEEEEEecCCcccccchhhhhhHHHHhCCCEEEEEcCCCeeeccccHHHhcCCceEEeccccceEEEEecCcch
Confidence 77655 89999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhccCCcEEEEEEeecCCCCCCCCCCCCCCChhHHHHHHhCCChHHHHHHHHHHCCCCCHHHHHHHH
Q 016909 240 LAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDDSTKYRPVDEIEWWRTTQDPVTRFRKWIESNGWWNGDIESELR 319 (380)
Q Consensus 240 ~av~~a~~~A~~~ar~~~gP~lIe~~t~R~~gHs~~Dd~~~Yr~~~e~~~~~~~~DPi~~~~~~L~~~g~~t~~~~~~i~ 319 (380)
.+||.|+++|.+.+-...+|+|||+.|||.++||+|||.+.||+.+|++.|.+.++||.+||+|+.++|+|+|+...+++
T Consensus 291 lAvYnA~k~ARe~av~e~rPvliEamtYRvGHHSTSDDSt~YRsadEiq~W~~~~~pisrfr~~i~~~GWw~ee~E~~~r 370 (432)
T KOG1182|consen 291 LAVYNAVKEAREMAVTEQRPVLIEAMTYRVGHHSTSDDSTAYRSADEIQYWNKSRHPISRFRKYIESNGWWSEEDESELR 370 (432)
T ss_pred HHHHHHHHHHHHHHHhccCchhhhhhhhhhccccCCCccccccchhhhhhhhcccCcHHHHHHHHHhcCCcChhhHHHHH
Confidence 99999999999999999999999999999999999999999999999999987899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCCCCCccccccccCCCccHHHHHHHHHHHHHhCCCCCCCCCC
Q 016909 320 SSVRKQILHALQEAEKAEKPPISDLFTDVYDVSPSNLREQEHSLRETIKKHPQDYPSNVP 379 (380)
Q Consensus 320 ~~~~~~v~~a~~~a~~~~~p~~~~~~~~vy~~~~~~~~~~~~~l~~~~~~~p~~~~~~~~ 379 (380)
++++++|.++++.|++-++|++.+||+|||.++|.++++|...|++.++++|++||+..|
T Consensus 371 k~~rk~vl~a~~~aEk~~K~~~~~lF~dVYd~~P~~L~eq~~~l~~~i~~~~e~Yp~~~~ 430 (432)
T KOG1182|consen 371 KNIRKKVLEAIAAAEKKEKPNLTELFEDVYDEMPKNLREQELELKEHIEKHPEHYPLKDF 430 (432)
T ss_pred HHHHHHHHHHHHHHhcccCCCHHHHHHHHhhhhhHhHHHHHHHHHHHHHhCcccCchhhc
Confidence 999999999999999999999999999999999999999999999999999999997644
No 3
>PLN02269 Pyruvate dehydrogenase E1 component subunit alpha
Probab=100.00 E-value=4e-81 Score=616.45 Aligned_cols=319 Identities=29% Similarity=0.477 Sum_probs=308.0
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-ccccccchhHHHHHHHHhcCCCCcEEEccccchHHHHHcCCCHHH
Q 016909 31 VKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRI-SFYLTTSGEEAINIASAAAIKNDDFVVPQYREPGVLLWRGFSMQE 109 (380)
Q Consensus 31 ~~~~~~~l~~~y~~M~~~R~~e~~~~~~~~~g~i-~~~~~~~GqEa~~~~~~~~l~~~D~v~~~yR~~~~~l~~G~~~~~ 109 (380)
..+++++++++|+.|+++|.||+++.+++++|++ +|+|+++||||+++|++.+|+++||++++||+|+++|++|+++.+
T Consensus 25 ~~~~~~~ll~~yr~M~~~R~~e~~~~~l~~~g~i~g~~~~~~GqEA~~vg~~~aL~~~D~~~~~yR~hg~~la~G~~~~~ 104 (362)
T PLN02269 25 VETSKQELVDFFRDMYLMRRMEIAADSLYKAKLIRGFCHLYDGQEAVAVGMEAAITKEDAIITAYRDHCTHLGRGGTVLE 104 (362)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccCCCCChHHHHHHHHHhcCCCCEEEechhhHHHHHHcCCCHHH
Confidence 4789999999999999999999999999999999 699999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCCCCCCCCCCccccCCCCCCcccccccccCccHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHH
Q 016909 110 FANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFS 189 (380)
Q Consensus 110 ~l~e~~g~~~~~~~G~~~~~H~~~~~~~~~~~~g~lG~~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A 189 (380)
+|++++|+.+|+|+|+++++|+.+++.|+++.++++|+++|+|+|+|+|.|+++.+.+++|++|||+++||.|||+||+|
T Consensus 105 ~~ae~~g~~~g~~~GrggsmH~~~~~~~~~~~~~~vG~~~p~A~G~A~A~k~~~~~~v~v~~~GDGa~~eG~~~Ealn~A 184 (362)
T PLN02269 105 VFAELMGRKDGCSRGKGGSMHFYKKDANFYGGHGIVGAQVPLGAGLAFAQKYNKEENVAFALYGDGAANQGQLFEALNIA 184 (362)
T ss_pred HHHHHcCCCCCCCCCCCCcccccchhcCccccCchhhccccHHHHHHHHHHHhCCCCeEEEEECCCCcccCHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCCEEEEEEcCCcceeeecccccCCcCHHHHHhhcCeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecC
Q 016909 190 AVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRV 269 (380)
Q Consensus 190 ~~~~Lpvi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R~ 269 (380)
+.|+||+||||+||+|+++++...+....++++++ +++|+++|||||+.+|+++++.|++++|+ +||+|||++|||+
T Consensus 185 ~~~~lPvvfvveNN~~aist~~~~~~~~~~~~~~~--~~~p~~~VDG~D~~av~~a~~~A~~~aR~-~gP~lIe~~tyR~ 261 (362)
T PLN02269 185 ALWDLPVIFVCENNHYGMGTAEWRAAKSPAYYKRG--DYVPGLKVDGMDVLAVKQACKFAKEHALS-NGPIVLEMDTYRY 261 (362)
T ss_pred hccCcCEEEEEeCCCEeccCchhhhccchHHHHhh--cCCCeEEECCCCHHHHHHHHHHHHHHHHh-CCCEEEEEecCcC
Confidence 99999999999999999999988887777777655 68999999999999999999999999999 9999999999999
Q ss_pred CCCCCCCCCCCCCChhHHHHHHhCCChHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCccccccc
Q 016909 270 GHHTTSDDSTKYRPVDEIEWWRTTQDPVTRFRKWIESNGWWNGDIESELRSSVRKQILHALQEAEKAEKPPISDLFTDVY 349 (380)
Q Consensus 270 ~gHs~~Dd~~~Yr~~~e~~~~~~~~DPi~~~~~~L~~~g~~t~~~~~~i~~~~~~~v~~a~~~a~~~~~p~~~~~~~~vy 349 (380)
+|||++|++..||+++|++.|++++|||.+|+++|+++|+||++++++|+++++++|++++++|+++|.|+++++|+|||
T Consensus 262 ~gHs~~D~~~~YR~~~E~~~~~~~~DPi~~~~~~L~~~g~~te~e~~~i~~e~~~~v~~a~~~A~~~p~P~~~~~~~~vy 341 (362)
T PLN02269 262 HGHSMSDPGSTYRTRDEISGVRQERDPIERVRKLLLAHELATEAELKDIEKEIRKEVDDAVAKAKESPMPDPSELFTNVY 341 (362)
T ss_pred CCcCCCCCCcccCCHHHHHHHHhCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHhhcc
Confidence 99999998789999999999974699999999999999999999999999999999999999999999999999999999
Q ss_pred cCC
Q 016909 350 DVS 352 (380)
Q Consensus 350 ~~~ 352 (380)
+++
T Consensus 342 ~~~ 344 (362)
T PLN02269 342 VKG 344 (362)
T ss_pred cCC
Confidence 965
No 4
>CHL00149 odpA pyruvate dehydrogenase E1 component alpha subunit; Reviewed
Probab=100.00 E-value=8.7e-80 Score=604.69 Aligned_cols=320 Identities=27% Similarity=0.436 Sum_probs=309.3
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-ccccccchhHHHHHHHHhcCCCCcEEEccccchHHHHHcCCCHH
Q 016909 30 FVKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRI-SFYLTTSGEEAINIASAAAIKNDDFVVPQYREPGVLLWRGFSMQ 108 (380)
Q Consensus 30 ~~~~~~~~l~~~y~~M~~~R~~e~~~~~~~~~g~i-~~~~~~~GqEa~~~~~~~~l~~~D~v~~~yR~~~~~l~~G~~~~ 108 (380)
.+.+|+++++++|+.|+++|.||+++.+++++|++ +|+|+++||||+++|++.+|+++|+++++||+|++++++|+++.
T Consensus 14 ~~~~~~~~ll~~y~~M~~~R~~e~~~~~~~~~g~i~g~~~~~~GqEa~~vg~~~al~~~D~~~~~yR~~~~~la~G~~~~ 93 (341)
T CHL00149 14 ENNINSMWLLVLYEDMLLGRNFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGVIKLLAETDYVCSTYRDHVHALSKGVPPK 93 (341)
T ss_pred ccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccCCCCChHHHHHHHHHhCCCCCEEEcccccHHHHHHcCCCHH
Confidence 45799999999999999999999999999999999 69999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCCCCCCCCCCCccccCCCCCCcccccccccCccHHHHHHHHHhhhcC-------CCceeEEEeCccccCcch
Q 016909 109 EFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDR-------KDACAVTYFGDGGTSEGD 181 (380)
Q Consensus 109 ~~l~e~~g~~~~~~~G~~~~~H~~~~~~~~~~~~g~lG~~~p~AvG~A~A~k~~~-------~~~~vv~~~GDG~~~eG~ 181 (380)
++|++++|+.+|+|+|+++++|+.+++.++++.+|+||.++|+|+|+|+|.|+++ ++++|+|++|||++++|.
T Consensus 94 ~~~ae~~g~~~g~~~Gr~gs~H~~~~~~~~~~~~g~lG~~lp~AvGaa~A~k~~~~~~~~~~~~~vvv~~~GDGa~~~G~ 173 (341)
T CHL00149 94 NVMAELFGKETGCSRGRGGSMHIFSAPHNFLGGFAFIGEGIPIALGAAFQSIYRQQVLKEVQPLRVTACFFGDGTTNNGQ 173 (341)
T ss_pred HHHHHHcCCCCCCCCCCCCCccccchhcCccCCChhhhccHHHHHHHHHHHHHhccccccCCCCCEEEEEeCCchhhhcH
Confidence 9999999999999999999999998888999999999999999999999999887 589999999999999999
Q ss_pred HHHHHHHHHHcCCCEEEEEEcCCcceeeecccccCCcCHHHHHhhcCeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEE
Q 016909 182 FHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPIL 261 (380)
Q Consensus 182 ~~Eal~~A~~~~Lpvi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~l 261 (380)
+||+||+|++|+||+||||+||+|+++++...++...++++++++||+++++|||+|+.+|++++++|++++|++++|+|
T Consensus 174 ~~Ealn~A~~~~LPvifvv~NN~~~i~~~~~~~~~~~d~a~~a~a~G~~~~~Vdg~d~~av~~a~~~A~~~ar~~~gP~l 253 (341)
T CHL00149 174 FFECLNMAVLWKLPIIFVVENNQWAIGMAHHRSTSIPEIHKKAEAFGLPGIEVDGMDVLAVREVAKEAVERARQGDGPTL 253 (341)
T ss_pred HHHHHHHHhhcCCCEEEEEEeCCeeeecchhheeCCccHHHHHHhCCCCEEEEeCCCHHHHHHHHHHHHHHHHhCCCCEE
Confidence 99999999999999999999999999998877777789999999999999999999999999999999999999999999
Q ss_pred EEEEeecCCCCCCCCCCCCCCChhHHHHHHhCCChHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCC
Q 016909 262 IEALTYRVGHHTTSDDSTKYRPVDEIEWWRTTQDPVTRFRKWIESNGWWNGDIESELRSSVRKQILHALQEAEKAEKPPI 341 (380)
Q Consensus 262 Ie~~t~R~~gHs~~Dd~~~Yr~~~e~~~~~~~~DPi~~~~~~L~~~g~~t~~~~~~i~~~~~~~v~~a~~~a~~~~~p~~ 341 (380)
||+.|||++|||++|+ ..||+++|++.|+ ++|||.+|+++|+++|++|++++++|+++++++|++++++|+++|.|++
T Consensus 254 Iev~tyR~~gHs~~D~-~~YR~~~e~~~~~-~~DPi~~~~~~L~~~g~~~~~~~~~i~~e~~~~v~~a~~~a~~~p~p~~ 331 (341)
T CHL00149 254 IEALTYRFRGHSLADP-DELRSKQEKEAWV-ARDPIKKLKSYIIDNELASQKELNKIQREVKIEIEQAVQFAISSPEPNI 331 (341)
T ss_pred EEEEEecCCCcCCCCC-ccCCCHHHHHHHh-cCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCH
Confidence 9999999999999975 5799999999998 6999999999999999999999999999999999999999999999999
Q ss_pred CccccccccC
Q 016909 342 SDLFTDVYDV 351 (380)
Q Consensus 342 ~~~~~~vy~~ 351 (380)
+++|+|||++
T Consensus 332 ~~~~~~vy~~ 341 (341)
T CHL00149 332 SDLKKYLFAD 341 (341)
T ss_pred HHHHhhcccC
Confidence 9999999974
No 5
>TIGR03181 PDH_E1_alph_x pyruvate dehydrogenase E1 component, alpha subunit. Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc.
Probab=100.00 E-value=1.9e-79 Score=603.35 Aligned_cols=341 Identities=42% Similarity=0.679 Sum_probs=323.1
Q ss_pred CeeEeeCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccchhHHHHHHHHhcCCCCcEEEc
Q 016909 13 PCYRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRISFYLTTSGEEAINIASAAAIKNDDFVVP 92 (380)
Q Consensus 13 ~~~~~~~~~g~~~~~~~~~~~~~~~l~~~y~~M~~~R~~e~~~~~~~~~g~i~~~~~~~GqEa~~~~~~~~l~~~D~v~~ 92 (380)
|.|||++.+|.+.++...+.+++++++++|++|+++|.||+++..++++|+++|+|+++||||+++|++.+|+++|++++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~y~~m~~~R~~e~~~~~~~~~g~i~~~~~~~GqEa~~vg~~~al~~~D~~~~ 80 (341)
T TIGR03181 1 ELVQVLDEDGNVVDPEPAPDLSDEELVELYRDMVLTRRFDTKALALQRQGRLGTYAPNLGQEAAQVGSALALRKDDWVFP 80 (341)
T ss_pred CceEEECCCCCcCCccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCceecccCCCChHHHHHHHHHHcCCCCEEEc
Confidence 67999999998766543457999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccchHHHHHcCCCHHHHHHHhhcCCCCCCCCCCCccccCCCCCCcccccccccCccHHHHHHHHHhhhcCCCceeEEEe
Q 016909 93 QYREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYF 172 (380)
Q Consensus 93 ~yR~~~~~l~~G~~~~~~l~e~~g~~~~~~~G~~~~~H~~~~~~~~~~~~g~lG~~~p~AvG~A~A~k~~~~~~~vv~~~ 172 (380)
+||+|++++++|+++.++|++++|+.+|. + .++..++++.++++|.++|.|+|+|+|.|+.+++++|+|++
T Consensus 81 ~yR~h~~~l~~G~~~~~~~ae~~g~~~g~--------~-~~~~~~~~g~~~~vG~~lp~AiGaAla~k~~~~~~~vv~~~ 151 (341)
T TIGR03181 81 SYRDHAAMLARGVPLVEILLYWRGDERGS--------W-DPEGVNILPPNIPIGTQYLHAAGVAYALKLRGEDNVAVTYF 151 (341)
T ss_pred chhhHHHHHHcCCCHHHHHHHhcCcCcCC--------C-CchhcCccCCCchHhcchhHHHhHHHHHHhhCCCCEEEEEe
Confidence 99999999999999999999999986542 1 13568999999999999999999999999999999999999
Q ss_pred CccccCcchHHHHHHHHHHcCCCEEEEEEcCCcceeeecccccCCcCHHHHHhhcCeeEEEEeCCCHHHHHHHHHHHHHH
Q 016909 173 GDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREM 252 (380)
Q Consensus 173 GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~A~~~ 252 (380)
|||++++|.++|+||+|++|+||+||||+||+|+++++...+....++++++++||+++++|||+|+.+|+++++.|+++
T Consensus 152 GDGa~~~g~~~EaL~tA~~~~LPvi~Vv~NN~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~Vdg~d~~av~~a~~~A~~~ 231 (341)
T TIGR03181 152 GDGGTSEGDFYEALNFAGVFKAPVVFFVQNNQWAISVPRSKQTAAPTLAQKAIAYGIPGVQVDGNDVLAVYAVTKEAVER 231 (341)
T ss_pred cCCccccChHHHHHHHHhccCCCEEEEEECCCCccccchhhhhCCcCHHHHHhhCCCCEEEECCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999988777767789999999999999999999999999999999999
Q ss_pred hhccCCcEEEEEEeecCCCCCCCCCCCCCCChhHHHHHHhCCChHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 016909 253 AIGEGRPILIEALTYRVGHHTTSDDSTKYRPVDEIEWWRTTQDPVTRFRKWIESNGWWNGDIESELRSSVRKQILHALQE 332 (380)
Q Consensus 253 ar~~~gP~lIe~~t~R~~gHs~~Dd~~~Yr~~~e~~~~~~~~DPi~~~~~~L~~~g~~t~~~~~~i~~~~~~~v~~a~~~ 332 (380)
+|++++|+|||++|||++||+++|++..||+++|++.|+ ++|||.+|+++|+++|++|++++++|+++++++|++++++
T Consensus 232 a~~~~gP~lIev~t~R~~gH~~~D~~~~YR~~~e~~~~~-~~Dpi~~~~~~L~~~g~~~~~e~~~i~~~~~~~v~~a~~~ 310 (341)
T TIGR03181 232 ARSGGGPTLIEAVTYRLGPHTTADDPTRYRTKEEEEEWR-KKDPILRLRKYLERKGLWDEEQEEALEEEAEAEVAEAVAE 310 (341)
T ss_pred HHcCCCCEEEEEEeecCCCCCCCCCCccCCCHHHHHHHh-cCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999998999999999998 5999999999999999999999999999999999999999
Q ss_pred HHhCCCCCCCccccccccCCCccHHHHHHHH
Q 016909 333 AEKAEKPPISDLFTDVYDVSPSNLREQEHSL 363 (380)
Q Consensus 333 a~~~~~p~~~~~~~~vy~~~~~~~~~~~~~l 363 (380)
|+++|.|+++++|+|||++.||++++|++.|
T Consensus 311 a~~~p~P~~~~~~~~vy~~~~~~~~~~~~~~ 341 (341)
T TIGR03181 311 ALALPPPPVDDIFDHVYAELPPELEEQRAEL 341 (341)
T ss_pred HHhCCCCCHHHHHhhcccCCCHHHHHHHHhC
Confidence 9999999999999999999999999998754
No 6
>TIGR03182 PDH_E1_alph_y pyruvate dehydrogenase E1 component, alpha subunit. Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc.
Probab=100.00 E-value=5.5e-79 Score=594.29 Aligned_cols=314 Identities=31% Similarity=0.541 Sum_probs=305.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-ccccccchhHHHHHHHHhcCCCCcEEEccccchHHHHHcCCCHHHHHHH
Q 016909 35 EGVAIKMYNDMVTLQTMDTIFYEAQRQGRI-SFYLTTSGEEAINIASAAAIKNDDFVVPQYREPGVLLWRGFSMQEFANQ 113 (380)
Q Consensus 35 ~~~l~~~y~~M~~~R~~e~~~~~~~~~g~i-~~~~~~~GqEa~~~~~~~~l~~~D~v~~~yR~~~~~l~~G~~~~~~l~e 113 (380)
+++++++|++|+++|.||+++.+++++|++ +|+|+++||||+++|++.+|+++||++++||+|+++|++|++++++|++
T Consensus 1 ~~~l~~~y~~M~~~R~~d~~~~~l~~~g~~~~~~~~~~GqEa~~vg~~~al~~~D~~~~~yR~~~~~la~G~~~~~~~~~ 80 (315)
T TIGR03182 1 KEELLELYRDMLLIRRFEEKAGQLYGMGKIGGFCHLYIGQEAVAVGLIAALKPDDYVITSYRDHGHALARGVPPKEVMAE 80 (315)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHhCCccccccCCCCChHHHHHHHHHhCCCCCEEEechhhHHHHHHcCCCHHHHHHH
Confidence 478999999999999999999999999999 5899999999999999999999999999999999999999999999999
Q ss_pred hhcCCCCCCCCCCCccccCCCCCCcccccccccCccHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcC
Q 016909 114 CFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTE 193 (380)
Q Consensus 114 ~~g~~~~~~~G~~~~~H~~~~~~~~~~~~g~lG~~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~ 193 (380)
++|+++|+|+|+++++|+.++..++++.+|+||.++|+|+|+|+|.|+.+++++|+|++|||++++|.+||+||+|++++
T Consensus 81 ~~g~~~g~~~Gr~g~~h~~~~~~~~~~~~g~~G~~lp~AiGaa~A~~~~~~~~~vv~~~GDGa~~~g~~~ealn~A~~~~ 160 (315)
T TIGR03182 81 LTGRATGCSKGKGGSMHMFDREKNFYGGHGIVGAQVPLATGLAFANKYRGNDNVTACFFGDGAANQGQFYESFNMAALWK 160 (315)
T ss_pred HcCCCCCCCCCCCCCCCcCchhhCcccCcCcccccccHHHHHHHHHHHhCCCCEEEEEeCCCcccccHHHHHHHHhhccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEEEcCCcceeeecccccCCcCHHHHHhhcCeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCCCCC
Q 016909 194 APVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHT 273 (380)
Q Consensus 194 Lpvi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R~~gHs 273 (380)
||+||||.||+|+++++...+.+.+++++++++||+++++|||+|+.+|++++++|++++|++++|+|||+.|||++|||
T Consensus 161 lPvi~vv~NN~yg~s~~~~~~~~~~~~a~~A~a~G~~~~~Vdg~d~~av~~a~~~A~~~ar~~~gP~lIe~~t~R~~gHs 240 (315)
T TIGR03182 161 LPVIFVIENNLYAMGTSVERSSSVTDLYKRGESFGIPGERVDGMDVLAVREAAKEAVERARSGKGPILLEMKTYRFRGHS 240 (315)
T ss_pred cCEEEEEEcCCccccCCHHHHhCCcCHHHHHHhCCCCEEEECCCCHHHHHHHHHHHHHHHHccCCCEEEEEeCCcCCCCC
Confidence 99999999999999999887777889999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCChhHHHHHHhCCChHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcccccccc
Q 016909 274 TSDDSTKYRPVDEIEWWRTTQDPVTRFRKWIESNGWWNGDIESELRSSVRKQILHALQEAEKAEKPPISDLFTDVYD 350 (380)
Q Consensus 274 ~~Dd~~~Yr~~~e~~~~~~~~DPi~~~~~~L~~~g~~t~~~~~~i~~~~~~~v~~a~~~a~~~~~p~~~~~~~~vy~ 350 (380)
++|++ .||+++|++.|+ ++|||.+|+++|+++|+||++++++|+++++++|+++++.|++.|.|+++++|+|||+
T Consensus 241 ~~D~~-~Yr~~~e~~~~~-~~dPi~~~~~~L~~~g~~~~~~~~~~~~~~~~~v~~a~~~a~~~p~p~~~~~~~~vy~ 315 (315)
T TIGR03182 241 MSDPA-KYRSKEEVEEWR-KRDPIEKLKARLIEQGIASEEELKEIDKEVRAEVEEAVEFAENSPEPPVEELYTDVYA 315 (315)
T ss_pred CCCcc-ccCCHHHHHHHH-hcCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHhhccC
Confidence 99876 799999999998 6999999999999999999999999999999999999999999999999999999995
No 7
>PLN02374 pyruvate dehydrogenase (acetyl-transferring)
Probab=100.00 E-value=1.5e-77 Score=601.68 Aligned_cols=322 Identities=26% Similarity=0.439 Sum_probs=310.8
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-ccccccchhHHHHHHHHhcCCCCcEEEccccchHHHHHcCCCHH
Q 016909 30 FVKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRI-SFYLTTSGEEAINIASAAAIKNDDFVVPQYREPGVLLWRGFSMQ 108 (380)
Q Consensus 30 ~~~~~~~~l~~~y~~M~~~R~~e~~~~~~~~~g~i-~~~~~~~GqEa~~~~~~~~l~~~D~v~~~yR~~~~~l~~G~~~~ 108 (380)
.+.+++++++++|++|+++|.||+++.+++++|++ +|+|+++||||+++|++.+|+++||++++||+|+++|++|++++
T Consensus 80 ~~~ls~e~ll~lyr~M~~~R~fEe~~~~l~~~Gki~g~~h~~~GqEA~~vg~~~aL~~~D~v~~~yR~h~~~La~G~~~~ 159 (433)
T PLN02374 80 DLLVTREEGLELYEDMVLGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKDDSVVSTYRDHVHALSKGVPAR 159 (433)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCcceeccCCCCCcHHHHHHHHHHcCCCCEEEccCcChHHhhhcCCCHH
Confidence 45899999999999999999999999999999999 79999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCCCCCCCCCCCccccCCCCCCcccccccccCccHHHHHHHHHhhhcC-------CCceeEEEeCccccCcch
Q 016909 109 EFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDR-------KDACAVTYFGDGGTSEGD 181 (380)
Q Consensus 109 ~~l~e~~g~~~~~~~G~~~~~H~~~~~~~~~~~~g~lG~~~p~AvG~A~A~k~~~-------~~~~vv~~~GDG~~~eG~ 181 (380)
++|+|++|+.+|+|+|+++++|+.+++.++.+.+++||.++|+|+|+|+|.|+++ ++++|+|++|||++++|.
T Consensus 160 ~~mael~Gk~~g~~~GrggsmH~~~~~~~~~g~~g~lG~~lP~AvGaA~A~k~~~~~~~~~~~~~vvv~~~GDGa~~eG~ 239 (433)
T PLN02374 160 AVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPVATGAAFSSKYRREVLKEESCDDVTLAFFGDGTCNNGQ 239 (433)
T ss_pred HHHHHHcCCCCCCCCCCCCcCccCchhhCCCCCceeccCchhHHHHHHHHHHHhhccccccCCCCEEEEEECCCccccCh
Confidence 9999999999999999999999999899999999999999999999999999875 488999999999999999
Q ss_pred HHHHHHHHHHcCCCEEEEEEcCCcceeeecccccCCcCHHHHHhhcCeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEE
Q 016909 182 FHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPIL 261 (380)
Q Consensus 182 ~~Eal~~A~~~~Lpvi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~l 261 (380)
|||+||+|++|+|||||||+||+|+++++...++..+++++++++||+++++|||+|+.+|++++++|++++|++++|+|
T Consensus 240 f~EaLn~A~~~~LPvIfVV~NN~yaig~~~~~~t~~~dia~~A~a~G~~~~~VDG~D~~av~~a~~~A~~~Ar~g~gP~L 319 (433)
T PLN02374 240 FFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPEIWKKGPAFGMPGVHVDGMDVLKVREVAKEAIERARRGEGPTL 319 (433)
T ss_pred HHHHHHHHHHhCCCEEEEEeCCCEeecceeeeccCCCCHHHHHHhcCCcEEEECCCCHHHHHHHHHHHHHHHHHcCCCEE
Confidence 99999999999999999999999999998888777789999999999999999999999999999999999999999999
Q ss_pred EEEEeecCCCCCCCCCCCCCCChhHHHHHHhCCChHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCC
Q 016909 262 IEALTYRVGHHTTSDDSTKYRPVDEIEWWRTTQDPVTRFRKWIESNGWWNGDIESELRSSVRKQILHALQEAEKAEKPPI 341 (380)
Q Consensus 262 Ie~~t~R~~gHs~~Dd~~~Yr~~~e~~~~~~~~DPi~~~~~~L~~~g~~t~~~~~~i~~~~~~~v~~a~~~a~~~~~p~~ 341 (380)
||+.|||++|||++|++ .||+++|++.|+ ++|||.+++++|+++|++|++++++|+++++++|++++++|+++|.|++
T Consensus 320 Ie~~tyR~~GHs~~D~~-~YR~~~e~~~~~-~~DPi~~~~~~L~~~gi~te~e~~~i~~~~~~~v~~a~~~A~~~p~P~~ 397 (433)
T PLN02374 320 VECETYRFRGHSLADPD-ELRDPAEKAHYA-ARDPIAALKKYLIENGLATEAELKAIEKKIDEVVEDAVEFADASPLPPR 397 (433)
T ss_pred EEEEEEecCCcCCCCcc-ccCCHHHHHHHH-cCCcHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCCH
Confidence 99999999999999865 699999999998 6999999999999999999999999999999999999999999999999
Q ss_pred CccccccccCCC
Q 016909 342 SDLFTDVYDVSP 353 (380)
Q Consensus 342 ~~~~~~vy~~~~ 353 (380)
+++|++||+++.
T Consensus 398 ~~~~~~vy~~~~ 409 (433)
T PLN02374 398 SQLLENVFADPK 409 (433)
T ss_pred HHHHhccccCCc
Confidence 999999999763
No 8
>KOG0225 consensus Pyruvate dehydrogenase E1, alpha subunit [Energy production and conversion]
Probab=100.00 E-value=3e-78 Score=567.64 Aligned_cols=320 Identities=31% Similarity=0.505 Sum_probs=310.2
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-ccccccchhHHHHHHHHhcCCCCcEEEccccchHHHHHcCCCHH
Q 016909 30 FVKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRI-SFYLTTSGEEAINIASAAAIKNDDFVVPQYREPGVLLWRGFSMQ 108 (380)
Q Consensus 30 ~~~~~~~~l~~~y~~M~~~R~~e~~~~~~~~~g~i-~~~~~~~GqEa~~~~~~~~l~~~D~v~~~yR~~~~~l~~G~~~~ 108 (380)
...+++++++++|++|+++|.+|..+-.+|++++| +|+|++.||||+++|+-.+|.+.|.++++||+|++.+.+|.++.
T Consensus 53 s~~~t~ee~L~~Y~~M~~~RrmE~aad~lYK~k~IRGFCHLy~GQEAvavGme~ait~~D~iItsYR~Hg~~~~~G~S~~ 132 (394)
T KOG0225|consen 53 SVELTKEEALKYYRDMQTIRRMELAADQLYKAKKIRGFCHLYDGQEAVAVGMEAAITKSDSIITSYRCHGWTYLRGVSVR 132 (394)
T ss_pred eEEecHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhceeeeecccHHHHHHHHHHhccCCCceEEEeeeeeEEeecCccHH
Confidence 45689999999999999999999999999999999 79999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCCCCCCCCCCCccccCCCCCCcccccccccCccHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHH
Q 016909 109 EFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNF 188 (380)
Q Consensus 109 ~~l~e~~g~~~~~~~G~~~~~H~~~~~~~~~~~~g~lG~~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~ 188 (380)
++|+|++|+.+|+|+|.+++||+..+ +|++.+|++|.|+|.++|+|+|.|+++.+.+++++.|||+.+||.++|++|+
T Consensus 133 ~v~aEL~Gr~~Gc~kGKGGSMHmy~k--~FyGGnGIVGAQiPLGaGia~A~kY~~~~~v~~alYGDGAaNQGQ~fEa~NM 210 (394)
T KOG0225|consen 133 EVLAELMGRQAGCSKGKGGSMHMYAK--NFYGGNGIVGAQIPLGAGIAFAQKYNREDAVCFALYGDGAANQGQVFEAFNM 210 (394)
T ss_pred HHHHHHhccccccccCCCcceeeecc--cccCccceeccCCCccccHHHHHHhccCCceEEEEeccccccchhHHHHhhH
Confidence 99999999999999999999999864 5999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCEEEEEEcCCcceeeecccccCCcCHHHHHhhcCeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeec
Q 016909 189 SAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 268 (380)
Q Consensus 189 A~~~~Lpvi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R 268 (380)
|++|+||+||||+||.|++.|+..+....+++.+|. .| +|++.|||+|+.+|.+|.+.|++++++++||+++|+.|||
T Consensus 211 A~LW~LP~IFvCENN~yGMGTs~~Rasa~teyykRG-~y-iPGl~VdGmdvlaVr~a~KfA~~~~~~g~GPilmE~~TYR 288 (394)
T KOG0225|consen 211 AALWKLPVIFVCENNHYGMGTSAERASASTEYYKRG-DY-IPGLKVDGMDVLAVREATKFAKKYALEGKGPILMEMDTYR 288 (394)
T ss_pred HHHhCCCEEEEEccCCCccCcchhhhhcChHHHhcc-CC-CCceEECCcchhhHHHHHHHHHHHHhcCCCCEEEEEeeee
Confidence 999999999999999999999999999899999999 45 9999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCChhHHHHHHhCCChHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcccccc
Q 016909 269 VGHHTTSDDSTKYRPVDEIEWWRTTQDPVTRFRKWIESNGWWNGDIESELRSSVRKQILHALQEAEKAEKPPISDLFTDV 348 (380)
Q Consensus 269 ~~gHs~~Dd~~~Yr~~~e~~~~~~~~DPi~~~~~~L~~~g~~t~~~~~~i~~~~~~~v~~a~~~a~~~~~p~~~~~~~~v 348 (380)
++|||.+|+.+.||+.||++..+.++|||..++++|++.++.|++|+++|+++++++|++++++|+++|.|++++|+.||
T Consensus 289 y~GHSmSDPg~sYRtReEiq~vR~kRDPI~~lk~~li~~~late~ELKai~k~irkeVdeav~~A~~~p~p~~~eL~~dv 368 (394)
T KOG0225|consen 289 YHGHSMSDPGTSYRTREEIQEVRQKRDPIEGLKKRLIELGLATEEELKAIDKEIRKEVDEAVAFATASPEPEPSELFTDV 368 (394)
T ss_pred ecccccCCCCcccchHHHHHHHHhccChHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHh
Confidence 99999999879999999999998789999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCC
Q 016909 349 YDVSP 353 (380)
Q Consensus 349 y~~~~ 353 (380)
|...+
T Consensus 369 y~~~~ 373 (394)
T KOG0225|consen 369 YVKGT 373 (394)
T ss_pred hccCC
Confidence 99764
No 9
>PF00676 E1_dh: Dehydrogenase E1 component; InterPro: IPR001017 This entry includes a number of dehydrogenases all of which use thiamine pyrophosphate as a cofactor and are members of a multienzyme complex. Pyruvate dehydrogenase (1.2.4.1 from EC), a component of the multienzyme pyruvate dehydrogenase complex; 2-oxoglutarate dehydrogenase (1.2.4.2 from EC), a component of the multienzyme 2-oxoglutarate dehydrogenase which contains multiple copies of three enzymatic components: 2-oxoglutarate dehydrogenase (E1), dihydrolipoamide succinyltransferase (E2) and lipoamide dehydrogenase (E3); and 2-oxoisovalerate dehydrogenase (1.2.4.4 from EC), a component of the multienzyme branched-chain alpha-keto dehydrogenase complex all belong to this family.; GO: 0016624 oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor, 0008152 metabolic process; PDB: 1X7Y_A 1V1M_A 1X7W_A 1OLU_A 2J9F_A 2BEW_A 1V11_A 2BFE_A 1U5B_A 2BEU_A ....
Probab=100.00 E-value=5.6e-74 Score=555.32 Aligned_cols=300 Identities=39% Similarity=0.654 Sum_probs=274.5
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCcccccccchhHHHHHHHHhcCCCCcEEEccccchHHHHHcCCCHHHHHHHhhcCCCCC
Q 016909 42 YNDMVTLQTMDTIFYEAQRQGRISFYLTTSGEEAINIASAAAIKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKADY 121 (380)
Q Consensus 42 y~~M~~~R~~e~~~~~~~~~g~i~~~~~~~GqEa~~~~~~~~l~~~D~v~~~yR~~~~~l~~G~~~~~~l~e~~g~~~~~ 121 (380)
|+.|+..|..|.++..+.++|+.+|+|++.||||++++++.+|+++||++++||+|+++|++|+++.++|++++|+..+.
T Consensus 1 y~~m~~~r~~d~~~~~~~~~~~~g~~~~~~GqEa~~v~~~~~l~~~D~v~~~yR~~~~~la~g~~~~~~~~e~~g~~~g~ 80 (300)
T PF00676_consen 1 YRMMLIRRFEDERARKLQRQGRFGFYHLSAGQEAIQVAAAAALRPGDWVFPYYRDHGHALARGIDLEEIFAELLGKAKGH 80 (300)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSSSCTT-TTTCHHHHHHHHHHSCTTSEEEECSTTHHHHHHTTT-HHHHHHHHHTBTTST
T ss_pred CchHHHHHHHHHHHHHHhhCCCeEEecchHHHHHHHHHHHHhccCCCEEEecccchhhhhhccccccchhHHhcCcccCC
Confidence 67777777777777777788888999999999999999999999999999999999999999999999999999999776
Q ss_pred CCCCCCccccCCCCCCcccccccccCccHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEE
Q 016909 122 GKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICR 201 (380)
Q Consensus 122 ~~G~~~~~H~~~~~~~~~~~~g~lG~~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~ 201 (380)
+.|+. +.|+..+..++++.++++|.++|+|+|+|+|.|+++.+.+++|++|||+++||.|||+||+|++|+|||||||+
T Consensus 81 ~g~~~-~~~~~~~~~~~~~~~~~vg~~~p~a~G~A~a~k~~~~~~v~v~~~GDga~~qG~~~EalN~A~~~~lPvifvve 159 (300)
T PF00676_consen 81 GGGRH-PLHFSDKGLNILGASSPVGAQVPIAAGVALAIKYRGKDGVVVCFFGDGATSQGDFHEALNLAALWKLPVIFVVE 159 (300)
T ss_dssp TTTGC-TTEEEBTTTTBEEEESSTTTHHHHHHHHHHHHHHTTSSEEEEEEEETGGGGSHHHHHHHHHHHHTTTSEEEEEE
T ss_pred CCCcc-ccccccccceeeeccccccccCccccchhHhhhhcCCceeEEEEecCcccccCccHHHHHHHhhccCCeEEEEe
Confidence 66666 68887777889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcceeeecccccCCcCHHHHHhhcCeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCCCCCCCCCCCCC
Q 016909 202 NNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDDSTKY 281 (380)
Q Consensus 202 NN~~~i~~~~~~~~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R~~gHs~~Dd~~~Y 281 (380)
||+|+|+|+...+++..+++++|++||+|+++|||+|+.+|++++++|++++|+++||+|||++|||++|||++|||..|
T Consensus 160 NN~~aist~~~~~~~~~~~~~~a~~~gip~~~VDG~D~~av~~a~~~A~~~~R~g~gP~lie~~tyR~~gHs~~Dd~~~y 239 (300)
T PF00676_consen 160 NNQYAISTPTEEQTASPDIADRAKGYGIPGIRVDGNDVEAVYEAAKEAVEYARAGKGPVLIEAVTYRLRGHSESDDPTFY 239 (300)
T ss_dssp EESEETTEEHHHHCSSSTSGGGGGGTTSEEEEEETTSHHHHHHHHHHHHHHHHTTT--EEEEEEE--SS-SSTTSCGGGT
T ss_pred cCCcccccCccccccccchhhhhhccCCcEEEECCEeHHHHHHHHHHHHHHHhcCCCCEEEEEeeccCCCCCCCCCcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChhHHHHHHhCCChHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCC
Q 016909 282 RPVDEIEWWRTTQDPVTRFRKWIESNGWWNGDIESELRSSVRKQILHALQEAEKAEKPPIS 342 (380)
Q Consensus 282 r~~~e~~~~~~~~DPi~~~~~~L~~~g~~t~~~~~~i~~~~~~~v~~a~~~a~~~~~p~~~ 342 (380)
|+++|++.|++.+|||.+++++|+++|++|++++++|+++++++|++++++|+++|.|+||
T Consensus 240 r~~~e~~~~~~~~DPi~~~~~~L~~~g~~t~~~~~~i~~e~~~~v~~a~~~a~~~p~p~~e 300 (300)
T PF00676_consen 240 RSPEEYEEWWKKRDPIKRFRRYLIEEGVLTEEELDAIEAEIKAEVEEAVEFAEASPEPDPE 300 (300)
T ss_dssp SHHHHHHHHHHCT-HHHHHHHHHHHTTSS-HHHHHHHHHHHHHHHHHHHHHHHHSHBC-G-
T ss_pred CCHHHHHHHHhcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCC
Confidence 9999998887667999999999999999999999999999999999999999999999986
No 10
>cd02000 TPP_E1_PDC_ADC_BCADC Thiamine pyrophosphate (TPP) family, E1 of PDC_ADC_BCADC subfamily, TPP-binding module; composed of proteins similar to the E1 components of the human pyruvate dehydrogenase complex (PDC), the acetoin dehydrogenase complex (ADC) and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC). PDC catalyzes the irreversible oxidative decarboxylation of pyruvate to produce acetyl-CoA in the bridging step between glycolysis and the citric acid cycle. ADC participates in the breakdown of acetoin while BCADC participates in the breakdown of branched chain amino acids. BCADC catalyzes the oxidative decarboxylation of 4-methyl-2-oxopentanoate, 3-methyl-2-oxopentanoate and 3-methyl-2-oxobutanoate (branched chain 2-oxo acids derived from the transamination of leucine, valine and isoleucine).
Probab=100.00 E-value=2.9e-72 Score=542.69 Aligned_cols=292 Identities=42% Similarity=0.733 Sum_probs=284.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCcc-cccccchhHHHHHHHHhcCCCCcEEEccccchHHHHHcCCCHHHHHHHhhcCCC
Q 016909 41 MYNDMVTLQTMDTIFYEAQRQGRIS-FYLTTSGEEAINIASAAAIKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKA 119 (380)
Q Consensus 41 ~y~~M~~~R~~e~~~~~~~~~g~i~-~~~~~~GqEa~~~~~~~~l~~~D~v~~~yR~~~~~l~~G~~~~~~l~e~~g~~~ 119 (380)
+|++|+++|.||+++.++++||++. |+|++.||||+++|++.+|+++|+++++||+|++++++|+++.++|++++|+.+
T Consensus 1 ~y~~m~~~R~~e~~~~~~~~~g~~~~~~~~~~GqEa~~vg~~~~l~~~D~~~~~yR~~~~~la~G~~~~~~~~e~~g~~~ 80 (293)
T cd02000 1 LYRTMVLIRRFDERLLELYRQGKIGGFYHLSIGQEAVAVGVAAALRPGDWVFPTYRDHGHALARGVDLKEMLAELFGKET 80 (293)
T ss_pred CHHHHHHHHHHHHHHHHHHHCCccccccCCCCChHHHHHHHHHHCCCCCEEEecchhHHHHHHcCCCHHHHHHHHcCCCC
Confidence 5999999999999999999999997 599999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCccccCCCCCCcccccccccCccHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEE
Q 016909 120 DYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFI 199 (380)
Q Consensus 120 ~~~~G~~~~~H~~~~~~~~~~~~g~lG~~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~v 199 (380)
|+++|+++++|+.++..++++.+|+||+++|+|+|+|+|.|+.+++++|||++|||++++|.++|+||+|++++||+|||
T Consensus 81 g~~~G~~g~~h~~~~~~~~~~~~g~lG~~~p~a~G~a~a~k~~~~~~~vv~~~GDGa~~~g~~~E~l~~A~~~~lPvi~v 160 (293)
T cd02000 81 GPCKGRGGSMHIGDKEKNFFGGNGIVGGQVPLAAGAALALKYRGEDRVAVCFFGDGATNEGDFHEALNFAALWKLPVIFV 160 (293)
T ss_pred CCCCCCCCCCCCCchhcCccccccccccchhHHHHHHHHHHHhCCCCEEEEEeCCCccccchHHHHHHHHHhhCCCEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCcceeeecccccCCcCHHHHHhhcCeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCCCCCCCCCCC
Q 016909 200 CRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDDST 279 (380)
Q Consensus 200 v~NN~~~i~~~~~~~~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R~~gHs~~Dd~~ 279 (380)
|+||+|+++++...+.+.+++++++++||+++++|||+|++++++++++|++++|++++|+|||+.|||.+|||++|||.
T Consensus 161 v~NN~~~i~~~~~~~~~~~~~~~~a~a~G~~~~~Vdg~d~~~v~~a~~~A~~~ar~~~~P~lIev~~~r~~gHs~~dd~~ 240 (293)
T cd02000 161 CENNGYAISTPTSRQTAGTSIADRAAAYGIPGIRVDGNDVLAVYEAAKEAVERARAGGGPTLIEAVTYRLGGHSTSDDPS 240 (293)
T ss_pred EeeCCeeccCCHHHHhCCccHHHHHHhCCCCEEEECCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEeccCCCCCCCCcc
Confidence 99999999998877777789999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCChhHHHHHHhCCChHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 016909 280 KYRPVDEIEWWRTTQDPVTRFRKWIESNGWWNGDIESELRSSVRKQILHALQEA 333 (380)
Q Consensus 280 ~Yr~~~e~~~~~~~~DPi~~~~~~L~~~g~~t~~~~~~i~~~~~~~v~~a~~~a 333 (380)
.||+++|++.|+ ++|||.+|+++|+++|++|++++++|+++++++|++++++|
T Consensus 241 ~Yr~~~e~~~~~-~~dpi~~~~~~L~~~g~~~~~~~~~~~~~~~~~v~~a~~~a 293 (293)
T cd02000 241 RYRTKEEVEEWK-KRDPILRLRKYLIEAGILTEEELAAIEAEVKAEVEEAVEFA 293 (293)
T ss_pred cCCCHHHHHHHh-cCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHhC
Confidence 999999999998 69999999999999999999999999999999999998864
No 11
>PRK09404 sucA 2-oxoglutarate dehydrogenase E1 component; Reviewed
Probab=100.00 E-value=1.6e-60 Score=511.72 Aligned_cols=340 Identities=14% Similarity=0.151 Sum_probs=296.7
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccchhHHHHHHHHh------cCCCCcEEEc-cccchHHHHH--
Q 016909 32 KVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRISFYLTTSGEEAINIASAA------AIKNDDFVVP-QYREPGVLLW-- 102 (380)
Q Consensus 32 ~~~~~~l~~~y~~M~~~R~~e~~~~~~~~~g~i~~~~~~~GqEa~~~~~~~------~l~~~D~v~~-~yR~~~~~l~-- 102 (380)
.+++++++++|+.|+++|.||+++.++|..+|. | ++.|||++.+++.. +++++|++++ +||||+++|+
T Consensus 185 ~~s~e~~~~il~~m~~~r~fE~fl~~~f~~~Kr-f--~~eG~Ea~i~gl~~li~~a~~lg~~D~vigmaHRgrlnvLa~v 261 (924)
T PRK09404 185 SFSAEEKKAILERLTAAEGFERFLHTKFVGQKR-F--SLEGGESLIPMLDEIIRRAGKLGVKEIVIGMAHRGRLNVLVNV 261 (924)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHhccCCc-c--cccchhhHHHHHHHHHHHHHhCCCCCEEEecCcCchHHHHHHh
Confidence 789999999999999999999999999988874 3 68999999999988 6668999999 5999999999
Q ss_pred cCCCHHHHHHHhhcCC--CCCCCCCCCccccCCCC-----C-----CcccccccccCccHHHHHHHHHhhhcCCC-----
Q 016909 103 RGFSMQEFANQCFGNK--ADYGKGRQMPIHYGSNK-----H-----NYFTVSSTIATQLPHAVGAAYALKMDRKD----- 165 (380)
Q Consensus 103 ~G~~~~~~l~e~~g~~--~~~~~G~~~~~H~~~~~-----~-----~~~~~~g~lG~~~p~AvG~A~A~k~~~~~----- 165 (380)
+|++++++|+|++|+. ++.+.++...+|++... - ....+.+++|.+.|+|+|+|+|.|+++.+
T Consensus 262 ~G~~~~~ifaEf~Gk~~~~~~~~~GdvkyHlG~~~~~~g~gg~mhi~l~~npShleav~Pva~G~A~A~q~~~~~~~~~~ 341 (924)
T PRK09404 262 LGKPPRDLFAEFEGKHGPDEVLGSGDVKYHLGFSSDRETDGGEVHLSLAFNPSHLEIVNPVVEGSVRARQDRRGDGQDRK 341 (924)
T ss_pred cCCCHHHHHHHHcCCCCCCCCCCCCCcccccCccccccCCCCeeEeeccCCccccccccCeehhHHHHHHHhcCCccccc
Confidence 5999999999999987 33222333444444321 0 11224689999999999999999998877
Q ss_pred -ceeEEEeCcccc-CcchHHHHHHHHHHcCCC---EEEEEEcCCcceeeecccccCCcCHHHHHhhcCeeEEEEeCCCHH
Q 016909 166 -ACAVTYFGDGGT-SEGDFHAALNFSAVTEAP---VIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDAL 240 (380)
Q Consensus 166 -~~vv~~~GDG~~-~eG~~~Eal~~A~~~~Lp---vi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~G~~~~~VdG~D~~ 240 (380)
.++||++|||++ +||.|||+||+|++|++| +||||+||+|+++|+...+.+...++++|++||+|+++|||+|++
T Consensus 342 ~~v~v~~~GDgA~agqG~v~EalNlA~l~~lp~ggvIfvveNNq~g~tT~~~~~~s~~~~sd~Ak~~giP~~~VDG~D~~ 421 (924)
T PRK09404 342 KVLPILIHGDAAFAGQGVVAETLNLSQLRGYRTGGTIHIVINNQIGFTTSPPDDRSTPYCTDVAKMVQAPIFHVNGDDPE 421 (924)
T ss_pred ceEEEEEecCccccCCChHHHHHHHHHhcCCCCCCEEEEEEeCCEEEeeCHHHhccchhHHHHHeecCCcEEEEcCCCHH
Confidence 799999999998 799999999999999997 999999999999999988887888999999999999999999999
Q ss_pred HHHHHHHHHHHHhhccCCcEEEEEEeecCCCCCCCCCCCCCCChhHHHHHHhCCChHHHHHHHHHHCCCCCHHHHHHHHH
Q 016909 241 AIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDDSTKYRPVDEIEWWRTTQDPVTRFRKWIESNGWWNGDIESELRS 320 (380)
Q Consensus 241 av~~a~~~A~~~ar~~~gP~lIe~~t~R~~gHs~~Dd~~~Yr~~~e~~~~~~~~DPi~~~~~~L~~~g~~t~~~~~~i~~ 320 (380)
+|+.+++.|++++|+++||+|||++|||++|||++|+| .||+++|++.|++.+||+.+|+++|+++|++|++++++|++
T Consensus 422 AV~~a~~~A~e~~r~g~gPvlIE~~tYR~~GHne~D~p-~yr~p~ey~~~~~~~dpi~~~~~~Li~~G~lt~~e~~~i~~ 500 (924)
T PRK09404 422 AVVFATRLALEYRQKFKKDVVIDLVCYRRHGHNEGDEP-SFTQPLMYKKIKKHPTTRELYADKLVAEGVITEEEADEMVN 500 (924)
T ss_pred HHHHHHHHHHHHHHhcCcCEEEEEEEecCCCCCCCCCC-cCCCHHHHHHHHhcCCHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999987 49999999999766899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCccccccccCC----------CccHHHHHHHHHHHHHhCCCCCCCCC
Q 016909 321 SVRKQILHALQEAEKAEKPPISDLFTDVYDVS----------PSNLREQEHSLRETIKKHPQDYPSNV 378 (380)
Q Consensus 321 ~~~~~v~~a~~~a~~~~~p~~~~~~~~vy~~~----------~~~~~~~~~~l~~~~~~~p~~~~~~~ 378 (380)
+++++|++|+++|++. .+.+.+..+|... +....+.++.+.+.+..-|++|++|.
T Consensus 501 ~~~~~v~~a~~~A~~~---~~~~~~~~~~~~~~~~~~~~~~~t~v~~~~l~~~~~~~~~~P~~f~~h~ 565 (924)
T PRK09404 501 EYRDALDAGFEVVKEW---RPADWLAGDWSPYLGHEWDDPVDTGVPLERLKELAEKLTTVPEGFKVHP 565 (924)
T ss_pred HHHHHHHHHHHHHHhc---CcccccccccccccccccccccCCCCCHHHHHHHHHHhccCCCCCcccH
Confidence 9999999999999986 3556666666511 11233457778888899999999875
No 12
>TIGR00239 2oxo_dh_E1 2-oxoglutarate dehydrogenase, E1 component. The E1 ortholog from Corynebacterium glutamicum is unusual in having an N-terminal extension that resembles the dihydrolipoamide succinyltransferase (E2) component of 2-oxoglutarate dehydrogenase.
Probab=100.00 E-value=6.2e-55 Score=466.70 Aligned_cols=344 Identities=15% Similarity=0.134 Sum_probs=297.2
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccchhHHHHHHHHhc------CCCCcEEEcc-ccchHHHHH-
Q 016909 31 VKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRISFYLTTSGEEAINIASAAA------IKNDDFVVPQ-YREPGVLLW- 102 (380)
Q Consensus 31 ~~~~~~~l~~~y~~M~~~R~~e~~~~~~~~~g~i~~~~~~~GqEa~~~~~~~~------l~~~D~v~~~-yR~~~~~l~- 102 (380)
..+++++.+++++.|+++..||+++.++|..-| +| +..|-|++..++-.. .+.+|+++++ |||+.+.|+
T Consensus 184 ~~~~~~~k~~il~~L~~ae~fE~fl~~kf~g~K-RF--slEG~eslip~l~~~i~~~~~~gv~d~v~gmaHRGRlnvL~n 260 (929)
T TIGR00239 184 AQFNSEEKKRFLSRLTAAEGFERFLGAKFPGAK-RF--SLEGLDALVPMLKEIIRHSVNSGTRDVVLGMAHRGRLNVLVN 260 (929)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCc-ee--ecccHHHHHHHHHHHHHHHHHcCCCeEEeccccCCcHHHHHH
Confidence 478999999999999999999999999885322 33 557888887765543 4578999998 999999999
Q ss_pred -cCCCHHHHHHHhhcCCCC-CCCCCCCc-cccCC-----------CCCCcccccccccCccHHHHHHHHHhhhcCC----
Q 016909 103 -RGFSMQEFANQCFGNKAD-YGKGRQMP-IHYGS-----------NKHNYFTVSSTIATQLPHAVGAAYALKMDRK---- 164 (380)
Q Consensus 103 -~G~~~~~~l~e~~g~~~~-~~~G~~~~-~H~~~-----------~~~~~~~~~g~lG~~~p~AvG~A~A~k~~~~---- 164 (380)
+|.+++++|+++.|+..+ .+.|++.. +|++. ....+.+++++|+.+.|+|+|.|+|.|+++.
T Consensus 261 v~gkp~~~if~ef~g~~~~~~~~g~gdvKyHlg~~~~~~~~~~~~~~~~l~~npSHLeav~Pva~G~ArA~q~~~~~~~~ 340 (929)
T TIGR00239 261 VLGKPPEDIFSEFAGKHKSHLPDGTGDVKYHMGRFSSDFTTDGKLVHLALAFNPSHLEIVSPVVIGSTRARLDRLNDSPE 340 (929)
T ss_pred HhCCCHHHHHHHHcCCCCCcccCCCCCcCccCCCcccccccCCCcceeeecCCCcccccccchhhhHHHHHHHhcCCccc
Confidence 999999999999998766 34467655 88884 2356788999999999999999999998765
Q ss_pred --CceeEEEeCcccc-CcchHHHHHHHHHHcCCCE---EEEEEcCCcceeeecccccCCcCHHHHHhhcCeeEEEEeCCC
Q 016909 165 --DACAVTYFGDGGT-SEGDFHAALNFSAVTEAPV---IFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGND 238 (380)
Q Consensus 165 --~~~vv~~~GDG~~-~eG~~~Eal~~A~~~~Lpv---i~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~G~~~~~VdG~D 238 (380)
+.++||++|||++ +||.|||+||+|+.|++|+ ||||+||+|+++|+...+.+...++++|++||+|+++|||+|
T Consensus 341 ~~~~v~v~~~GDgA~agQG~v~EaLNlA~l~~lPvGGtIfvveNNqyg~tT~~~~~~s~~~~sd~Ak~ygiP~~~VDG~D 420 (929)
T TIGR00239 341 STKVLAILIHGDAAFAGQGVVQETLNMSKLRGYSVGGTIHIIINNQIGFTTNPLDARSTPYCSDLAKMIQAPIFHVNADD 420 (929)
T ss_pred ccceEEEEEeccccccCCChHHHHHHHHHhcCCCCCCEEEEEEeCCEEEEEcHHHhcCccCHHHHheecCCCEEEECCCC
Confidence 5789999999997 8999999999999999996 999999999999988888777789999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhccCCcEEEEEEeecCCCCCCCCCCCCCCChhHHHHHHhCCChHHHHHHHHHHCCCCCHHHHHHH
Q 016909 239 ALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDDSTKYRPVDEIEWWRTTQDPVTRFRKWIESNGWWNGDIESEL 318 (380)
Q Consensus 239 ~~av~~a~~~A~~~ar~~~gP~lIe~~t~R~~gHs~~Dd~~~Yr~~~e~~~~~~~~DPi~~~~~~L~~~g~~t~~~~~~i 318 (380)
+++|+.+++.|++++|+++||+|||++|||++|||++|+|..||+ ++++.|++.+||+.+|+++|+++|++|++++++|
T Consensus 421 ~~AV~~a~~~Ave~~r~g~gPvlIE~~tYR~~GHne~D~p~~yrp-~~~~~i~~~~dPi~~~~~~Li~~Gv~te~e~~~i 499 (929)
T TIGR00239 421 PEAVAFATRLAVEYRNTFKRDVFIDLVGYRRHGHNEADEPSATQP-LMYQKIKKHPTPRKVYADKLVSEGVATEEDVTEM 499 (929)
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEEEeccCCCCCCCCCCccCCH-HHHHHHHhCCCHHHHHHHHHHHcCCCCHHHHHHH
Confidence 999999999999999999999999999999999999999988998 7788887568999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCCC--c---cccccccC--CCccHHHHHHHHHHHHHhCCCCCCCCC
Q 016909 319 RSSVRKQILHALQEAEKAEKPPIS--D---LFTDVYDV--SPSNLREQEHSLRETIKKHPQDYPSNV 378 (380)
Q Consensus 319 ~~~~~~~v~~a~~~a~~~~~p~~~--~---~~~~vy~~--~~~~~~~~~~~l~~~~~~~p~~~~~~~ 378 (380)
+++++++|++|++.++..+.|.+. . +..+.+.. .+....+.+..|.+.+...|+.|++|.
T Consensus 500 ~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~v~~~~l~~l~~~~~~~P~~f~~h~ 566 (929)
T TIGR00239 500 VNLYRDALEAADCVVPSWREMNTASFTWSPELNHEWDEEYPNKVEMKRLQELAKRISEVPEGVEMHS 566 (929)
T ss_pred HHHHHHHHHHHHHhhhccCCccccccccccccccccccCCCCCCCHHHHHHHHHHhccCCCCccccH
Confidence 999999999999999886655433 1 22221111 233445778899999999999998874
No 13
>cd02016 TPP_E1_OGDC_like Thiamine pyrophosphate (TPP) family, E1 of OGDC-like subfamily, TPP-binding module; composed of proteins similar to the E1 component of the 2-oxoglutarate dehydrogenase multienzyme complex (OGDC). OGDC catalyzes the oxidative decarboxylation of 2-oxoglutarate to succinyl-CoA and carbon dioxide, a key reaction of the tricarboxylic acid cycle.
Probab=100.00 E-value=2.7e-49 Score=372.72 Aligned_cols=230 Identities=19% Similarity=0.223 Sum_probs=208.9
Q ss_pred HHHHHHHHHhcCCcccccccchhHHHHHHHHhcCCC------CcEEEcc-ccchHHHHH--cCCCHHHHHHHhhcCCC--
Q 016909 51 MDTIFYEAQRQGRISFYLTTSGEEAINIASAAAIKN------DDFVVPQ-YREPGVLLW--RGFSMQEFANQCFGNKA-- 119 (380)
Q Consensus 51 ~e~~~~~~~~~g~i~~~~~~~GqEa~~~~~~~~l~~------~D~v~~~-yR~~~~~l~--~G~~~~~~l~e~~g~~~-- 119 (380)
||+++.++|..-+ +| +..|+|++++++...+++ +|+++++ |||+.++|+ +|++++++|+|+.|+.+
T Consensus 1 ~e~f~~~~f~~~k-rf--s~eG~Es~~~~l~~~~~~~~~~~~~d~v~gm~HRgrln~L~~~lg~~~~~if~ef~g~~~~~ 77 (265)
T cd02016 1 FEQFLATKFPGQK-RF--GLEGAESLIPALDELIDRAAELGVEEVVIGMAHRGRLNVLANVLGKPLEQIFSEFEGKSEFP 77 (265)
T ss_pred ChhhHHHhcCCCe-EE--EecCHHHHHHHHHHHHHHHHhcCCCeEEeccCcCCcHHHHHHHhCCCHHHHHHHhhCCCCCC
Confidence 5778887775322 23 589999999999999986 7999998 999999999 99999999999999887
Q ss_pred -CCCCCCCCccccCCCC-----------CCcccccccccCccHHHHHHHHHhhhcC-----CCceeEEEeCcccc-Ccch
Q 016909 120 -DYGKGRQMPIHYGSNK-----------HNYFTVSSTIATQLPHAVGAAYALKMDR-----KDACAVTYFGDGGT-SEGD 181 (380)
Q Consensus 120 -~~~~G~~~~~H~~~~~-----------~~~~~~~g~lG~~~p~AvG~A~A~k~~~-----~~~~vv~~~GDG~~-~eG~ 181 (380)
+.+.|+++++|++... ..+.+++++||.++|+|+|+|+|.|+++ .+.++||++|||++ +||.
T Consensus 78 ~~~~~~gdv~yHlg~~~~~~~~~~~~~~~~l~~npS~l~~~~pva~G~A~A~k~~~~~~~~~~~v~v~~~GDgA~~~qG~ 157 (265)
T cd02016 78 EDDEGSGDVKYHLGYSSDRKTPSGKKVHLSLAPNPSHLEAVNPVVMGKTRAKQDYRGDGERDKVLPILIHGDAAFAGQGV 157 (265)
T ss_pred CCCCCCCCcCcCCccCcccccCCCCeeEEEecCCCcccccccCeehhHHHHHHHhcCCccCCCeEEEEEecCccccCCCh
Confidence 5556888999998654 5678899999999999999999999987 47899999999996 7999
Q ss_pred HHHHHHHHHHcCCC---EEEEEEcCCcceeeecccccCCcCHHHHHhhcCeeEEEEeCCCHHHHHHHHHHHHHHhhccCC
Q 016909 182 FHAALNFSAVTEAP---VIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGR 258 (380)
Q Consensus 182 ~~Eal~~A~~~~Lp---vi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~g 258 (380)
|||+||+|++|++| +||||+||+|+++|+.+.+++..+++++|++||+|+++|||+|+++|+++++.|++++|+++|
T Consensus 158 ~~EalNlA~l~~lp~gg~ifvveNNq~g~sT~~~~~~~~~~~~~~a~~~gip~~~VdG~D~~aV~~a~~~A~~~~r~g~g 237 (265)
T cd02016 158 VYETLNLSNLPGYTTGGTIHIVVNNQIGFTTDPRDSRSSPYCTDVAKMIGAPIFHVNGDDPEAVVRATRLALEYRQKFKK 237 (265)
T ss_pred HHHHHHHHHhcCCCCCCEEEEEEeCCEEEEecHHHhcccccHHHHHeecCCCEEEEcCCCHHHHHHHHHHHHHHHHhcCC
Confidence 99999999999998 999999999999999998888889999999999999999999999999999999999999999
Q ss_pred cEEEEEEeecCCCCCCCCCCCCCCCh
Q 016909 259 PILIEALTYRVGHHTTSDDSTKYRPV 284 (380)
Q Consensus 259 P~lIe~~t~R~~gHs~~Dd~~~Yr~~ 284 (380)
|+|||++|||++|||++|+| .|+++
T Consensus 238 p~lIe~~tYR~~GHse~D~p-~~t~p 262 (265)
T cd02016 238 DVVIDLVCYRRHGHNELDEP-SFTQP 262 (265)
T ss_pred CEEEEEEEecCCCCCCcCCc-cccCC
Confidence 99999999999999999987 45554
No 14
>PRK12270 kgd alpha-ketoglutarate decarboxylase; Reviewed
Probab=100.00 E-value=1.3e-35 Score=311.20 Aligned_cols=344 Identities=17% Similarity=0.166 Sum_probs=279.9
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCcccccccchhHHHHHHHHhcCC------CCcEEEcc-ccchHHHH
Q 016909 30 FVKVSEGVAIKMYNDMVTLQTMDTIFYEAQR-QGRISFYLTTSGEEAINIASAAAIK------NDDFVVPQ-YREPGVLL 101 (380)
Q Consensus 30 ~~~~~~~~l~~~y~~M~~~R~~e~~~~~~~~-~g~i~~~~~~~GqEa~~~~~~~~l~------~~D~v~~~-yR~~~~~l 101 (380)
..+++.++.+.+++.+-.+..||.++..+|- |++ | +..|-|.+...+-..|. -+.+++++ |||+.+.|
T Consensus 487 ~~kp~~~eq~~iL~~LnaaEaFEtFLqtkyvGqkR--F--slEG~Es~iplld~~~~~aa~~~l~evvigm~HRGRLNVL 562 (1228)
T PRK12270 487 HEKPTREEQKRILSKLNAAEAFETFLQTKYVGQKR--F--SLEGGESLIPLLDAVLDQAAEHGLDEVVIGMAHRGRLNVL 562 (1228)
T ss_pred CCCCCHHHHHHHHHHhhhHHHHHHHHhhhccccee--e--eecchhhHHHHHHHHHHHHHhcCCceEEecccccchHHHH
Confidence 4678999999999999999999999988773 443 3 45777887766655553 36888886 99999998
Q ss_pred H--cCCCHHHHHHHhhcCCCCC-CCCCC-CccccCCC-----------CCCcccccccccCccHHHHHHHHHhhhcC---
Q 016909 102 W--RGFSMQEFANQCFGNKADY-GKGRQ-MPIHYGSN-----------KHNYFTVSSTIATQLPHAVGAAYALKMDR--- 163 (380)
Q Consensus 102 ~--~G~~~~~~l~e~~g~~~~~-~~G~~-~~~H~~~~-----------~~~~~~~~g~lG~~~p~AvG~A~A~k~~~--- 163 (380)
+ .|.+..++|.||-|+.+.. ..|+| ..+|++.. +..+..+.++|...-|+.-|++.|.+..-
T Consensus 563 ani~gK~y~qiF~EFegn~dp~~~~GsGDVKYHlG~eG~~~~~~g~~~~v~laaNPSHLEavdpVleGivRakQd~l~~g 642 (1228)
T PRK12270 563 ANIVGKPYSQIFREFEGNLDPRSAQGSGDVKYHLGAEGTFTQMFGDEIKVSLAANPSHLEAVDPVLEGIVRAKQDRLDKG 642 (1228)
T ss_pred HHHhcCCHHHHHHHhcCCCCccccCcCcceeeeccCceeeeccCCCeeEEEEecCchhhhhcchHhhhhhhhhhhhhccc
Confidence 7 7999999999999987643 35655 67777642 12345678999999999999999987532
Q ss_pred C---CceeEEEeCcccc-CcchHHHHHHHHHHcCCC---EEEEEEcCCcceeeecccccCCcCHHHHHhhcCeeEEEEeC
Q 016909 164 K---DACAVTYFGDGGT-SEGDFHAALNFSAVTEAP---VIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDG 236 (380)
Q Consensus 164 ~---~~~vv~~~GDG~~-~eG~~~Eal~~A~~~~Lp---vi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~G~~~~~VdG 236 (380)
. ....|+++||++| +||.++|+||+|..+++| +||||.||+++++|......+.....++++++++|+++|||
T Consensus 643 ~~~~~vlpi~~hGdaafagQGvV~Etlnla~l~~y~tGGtIhvivNNqiGftT~p~~~Rss~y~td~ak~~~~PifhVNG 722 (1228)
T PRK12270 643 EEGFTVLPILLHGDAAFAGQGVVAETLNLSQLRGYRTGGTIHIVVNNQVGFTTAPESSRSSEYATDVAKMIQAPIFHVNG 722 (1228)
T ss_pred ccCCceeEEEEeccccccCCchHHHHHHHHhccCCCCCCeEEEEEecCcccccCccccccchhhHHHHhhcCCCEEeECC
Confidence 1 3478999999997 899999999999999998 99999999999999988777777778999999999999999
Q ss_pred CCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCCCCCCCCCCCCCCChhHHHHHHhCCChHHHHHHHHHHCCCCCHHHHH
Q 016909 237 NDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDDSTKYRPVDEIEWWRTTQDPVTRFRKWIESNGWWNGDIES 316 (380)
Q Consensus 237 ~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R~~gHs~~Dd~~~Yr~~~e~~~~~~~~DPi~~~~~~L~~~g~~t~~~~~ 316 (380)
+|+++|..+.+.|+++++++++|++|++.|||.+||+++|||+ +.++..++...+++..-+.|.+.|+.+|.+|++|.+
T Consensus 723 dDpeAv~~va~lA~~yr~~f~~dVvIdlvcYRrrGHNEgDdPS-mtqP~mY~~i~~~~svrk~yte~Ligrgdit~ee~e 801 (1228)
T PRK12270 723 DDPEAVVRVARLAFEYRQRFHKDVVIDLVCYRRRGHNEGDDPS-MTQPLMYDLIDAKRSVRKLYTEALIGRGDITVEEAE 801 (1228)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCCeEEEEEEEeecCCCCCCCcc-cCCchhhhhhhhcchHHHHHHHHHhhcCCCCHHHHH
Confidence 9999999999999999999999999999999999999999986 455556665554445556899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCCCC---ccc-cccccC--CCccHHHHHHHHHHHHHhCCCCCCCCC
Q 016909 317 ELRSSVRKQILHALQEAEKAEKPPIS---DLF-TDVYDV--SPSNLREQEHSLRETIKKHPQDYPSNV 378 (380)
Q Consensus 317 ~i~~~~~~~v~~a~~~a~~~~~p~~~---~~~-~~vy~~--~~~~~~~~~~~l~~~~~~~p~~~~~~~ 378 (380)
++..+++++++.++...++....+++ ... +..... .+....+.++.+.+.....||.|.+|.
T Consensus 802 ~~l~dy~~~Le~~f~e~re~~~~~~~~~~~~~~~~~~~~~~~Tav~~~~l~~i~da~~~~PegFt~Hp 869 (1228)
T PRK12270 802 QALRDYQGQLERVFNEVREAEKKPPEPPESVESDQGPPAGVDTAVSAEVLERIGDAHVNLPEGFTVHP 869 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCCCCCCCccccccCCCCCCCCCCHHHHHHHHHHhccCCCCCccCh
Confidence 99999999999999988765433222 111 111110 123346788999999999999999884
No 15
>PRK12315 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=100.00 E-value=7.9e-34 Score=297.27 Aligned_cols=223 Identities=17% Similarity=0.166 Sum_probs=185.7
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-ccccccchhHHHHHHHHhcCC---CCcEEE--ccccchHHHHH
Q 016909 29 SFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRI-SFYLTTSGEEAINIASAAAIK---NDDFVV--PQYREPGVLLW 102 (380)
Q Consensus 29 ~~~~~~~~~l~~~y~~M~~~R~~e~~~~~~~~~g~i-~~~~~~~GqEa~~~~~~~~l~---~~D~v~--~~yR~~~~~l~ 102 (380)
+.+.|+.++|..+-..+ |.+ ..+..+++ +++++++|+ +.++++.++. +.|+++ +.||+|++.++
T Consensus 11 d~~~l~~~~l~~l~~~i---r~~-----~~~~~~~~~Gh~~~~lg~--vel~~al~~~f~~~~D~ii~d~ghr~~~~~l~ 80 (581)
T PRK12315 11 DLKKLSLDELEQLASEI---RTA-----LLEKDSAHGGHVGPNLGV--VELTIALHYVFNSPKDKIVWDVSHQSYPHKML 80 (581)
T ss_pred HHhhCCHHHHHHHHHHH---HHH-----HHHHHHhcCCCcCcchhH--HHHHHHHHhhcCCCCCcEEEecCCchHHHHHH
Confidence 45677777665554332 333 22334555 599999999 5566666776 899999 89999999999
Q ss_pred cCCCHHHHHHHhhcCCCCCCCCCCCccccCCCCCCcccccccccCccHHHHHHHHHhhhcCCCceeEEEeCccccCcchH
Q 016909 103 RGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDF 182 (380)
Q Consensus 103 ~G~~~~~~l~e~~g~~~~~~~G~~~~~H~~~~~~~~~~~~g~lG~~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~ 182 (380)
+|.++..++.+++|+.+|++++.+ +.|.. ..+|+.|+++|+|+|+|+|.|+++.+.+|||++|||++++|.+
T Consensus 81 ~G~~~~~~~~~~~g~~~G~~~~~~-s~~~~-------~~~g~~~~~ls~A~G~A~A~k~~~~~~~vv~~iGDG~~~eG~~ 152 (581)
T PRK12315 81 TGRKEAFLDPDHYDDVTGYTNPEE-SEHDF-------FTVGHTSTSIALATGLAKARDLKGEKGNIIAVIGDGSLSGGLA 152 (581)
T ss_pred cCCccchhhHHHcCCCCCCCCCCC-CCCCC-------cCCCcHHHHHHHHHHHHHHHHhcCCCCeEEEEECchhhhcchH
Confidence 999999999999999999888766 22321 3568899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCEEEEEEcCCcceeeeccc---------ccCCcCHHHHHhhcCeeEEEE-eCCCHHHHHHHHHHHHHH
Q 016909 183 HAALNFSAVTEAPVIFICRNNGWAISTPISD---------QFRSDGAVVKGRAYGVRSIRV-DGNDALAIYSAVHAAREM 252 (380)
Q Consensus 183 ~Eal~~A~~~~Lpvi~vv~NN~~~i~~~~~~---------~~~~~~~~~~a~a~G~~~~~V-dG~D~~av~~a~~~A~~~ 252 (380)
||+||+|+.|++|+||||+||+|++++++.. .....++.+++++|||+++.| ||||+.++++++++|.
T Consensus 153 ~EAln~A~~~k~~li~Ii~dN~~si~~~~~~~~~~l~~~~~~~~~~~~~~~~a~G~~~~~v~DG~D~~~l~~a~~~a~-- 230 (581)
T PRK12315 153 LEGLNNAAELKSNLIIIVNDNQMSIAENHGGLYKNLKELRDTNGQSENNLFKAMGLDYRYVEDGNDIESLIEAFKEVK-- 230 (581)
T ss_pred HHHHHHHHhhCCCEEEEEECCCCcCCCCCchhhhhhhhhhhcccccHHHHHHhcCCeEEEeeCCCCHHHHHHHHHHHH--
Confidence 9999999999999999999999999987742 223445678999999999998 9999999999999865
Q ss_pred hhccCCcEEEEEEeecCCCCC
Q 016909 253 AIGEGRPILIEALTYRVGHHT 273 (380)
Q Consensus 253 ar~~~gP~lIe~~t~R~~gHs 273 (380)
++++|++|+++|+|..|..
T Consensus 231 --~~~gP~~i~~~T~kG~G~~ 249 (581)
T PRK12315 231 --DIDHPIVLHIHTLKGKGYQ 249 (581)
T ss_pred --hCCCCEEEEEEeecCCCCC
Confidence 3689999999999999853
No 16
>COG3959 Transketolase, N-terminal subunit [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1e-31 Score=242.27 Aligned_cols=218 Identities=19% Similarity=0.213 Sum_probs=176.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCcccccccchh-HHHHHHHHhcCC---------CCcEEEccccch------HHHH
Q 016909 38 AIKMYNDMVTLQTMDTIFYEAQRQGRISFYLTTSGE-EAINIASAAAIK---------NDDFVVPQYREP------GVLL 101 (380)
Q Consensus 38 l~~~y~~M~~~R~~e~~~~~~~~~g~i~~~~~~~Gq-Ea~~~~~~~~l~---------~~D~v~~~yR~~------~~~l 101 (380)
..++-+....+|.---++.....+|.++ .+... |..++.....|+ ..|+++.+ .|| +.+.
T Consensus 7 ~~~L~~~A~~iRr~~v~m~~~~~~GH~G---~SLS~~eILa~LYf~~m~~~p~~p~~~~RDrfiLS-KGHaa~AlYa~La 82 (243)
T COG3959 7 VDELERIAREIRRNIVRMLANAGSGHVG---GSLSVVEILAVLYFKIMNIDPDDPKWPGRDRFILS-KGHAAPALYATLA 82 (243)
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCCCcC---ccchHHHHHHHHHHHHhccCCCCCCCCCCCeEEEe-cccchHHHHHHHH
Confidence 3444555566676655555444555432 23322 444444444443 34777776 455 2445
Q ss_pred HcCCCHHHHHHHhhcCCCCCCCCCCCccccCC-CCCCcccccccccCccHHHHHHHHHhhhcCCCceeEEEeCccccCcc
Q 016909 102 WRGFSMQEFANQCFGNKADYGKGRQMPIHYGS-NKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEG 180 (380)
Q Consensus 102 ~~G~~~~~~l~e~~g~~~~~~~G~~~~~H~~~-~~~~~~~~~g~lG~~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG 180 (380)
.+|+.+++-+..+.. .|+.+++|+.. ..+++..++|+||+|+++|+|+|++.|+++.+..|++++|||+++||
T Consensus 83 e~G~~p~eeL~~~~~------~~srL~~Hp~~~~~pgve~stGSLGqGLsvavGmAlg~kl~~~~~~VyvilGDGEl~EG 156 (243)
T COG3959 83 EKGYFPEEELETFRR------IGSRLPGHPERNKTPGVEVSTGSLGQGLSVAVGMALGAKLKGSPYRVYVILGDGELDEG 156 (243)
T ss_pred HcCCCCHHHHHHhcc------CCCcCCCCCccCCCCceeecCCcccccchHHHHHHHHHhhcCCCceEEEEecCcccccc
Confidence 689988888886653 48889999987 56789999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHcCC-CEEEEEEcCCcceeeecccccCCcCHHHHHhhcCeeEEEEeCCCHHHHHHHHHHHHHHhhccCCc
Q 016909 181 DFHAALNFSAVTEA-PVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRP 259 (380)
Q Consensus 181 ~~~Eal~~A~~~~L-pvi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP 259 (380)
.+|||+.+|++|+| ++|.||+-|..++++.+++..+..++.+++++|||++++|||||++++.+|+.++... .++|
T Consensus 157 ~~WEAam~Aah~~L~NLiaivD~N~~QldG~t~~i~~~~pL~~k~eAFGw~V~evdG~d~~~i~~a~~~~~~~---~~rP 233 (243)
T COG3959 157 QVWEAAMTAAHYKLDNLIAIVDRNKLQLDGETEEIMPKEPLADKWEAFGWEVIEVDGHDIEEIVEALEKAKGS---KGRP 233 (243)
T ss_pred cHHHHHHHHHHhccCcEEEEEecCCcccCCchhhccCcchhHHHHHhcCceEEEEcCcCHHHHHHHHHhhhcc---CCCC
Confidence 99999999999999 8999999999999999999999999999999999999999999999999999887642 4499
Q ss_pred EEEEEEeec
Q 016909 260 ILIEALTYR 268 (380)
Q Consensus 260 ~lIe~~t~R 268 (380)
.+|.++|.+
T Consensus 234 ~~IIa~Tvk 242 (243)
T COG3959 234 TVIIAKTVK 242 (243)
T ss_pred eEEEEeccc
Confidence 999999865
No 17
>KOG0450 consensus 2-oxoglutarate dehydrogenase, E1 subunit [Carbohydrate transport and metabolism]
Probab=99.97 E-value=2.4e-29 Score=254.59 Aligned_cols=345 Identities=13% Similarity=0.134 Sum_probs=282.7
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccchhHHHHHHHHhcC------CCCcEEEcc-ccchHHHH
Q 016909 29 SFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRISFYLTTSGEEAINIASAAAI------KNDDFVVPQ-YREPGVLL 101 (380)
Q Consensus 29 ~~~~~~~~~l~~~y~~M~~~R~~e~~~~~~~~~g~i~~~~~~~GqEa~~~~~~~~l------~~~D~v~~~-yR~~~~~l 101 (380)
....++.|+.+-+|..++++-.||+++...+..-| +| ...|.|++..|+-..+ +.+++|+++ |||+...|
T Consensus 242 ~~~q~s~e~k~~il~RL~~st~FE~FLa~Kw~seK-RF--GLEGcE~lIP~mK~iiDrS~elGVe~iviGMpHRGRLNvL 318 (1017)
T KOG0450|consen 242 GPMQYSHEQKRVILDRLTRSTRFEEFLATKWPSEK-RF--GLEGCEVLIPAMKTIIDRSSELGVESIVIGMPHRGRLNVL 318 (1017)
T ss_pred CccccCHHHHHHHHHHHHHhhHHHHHHhhhCCccc-cc--cccchhhhhhHHHHHhhhhhhcCchheEecCCccchhHHH
Confidence 35678999999999999999999999998886443 23 3478898888876544 568999996 99999888
Q ss_pred H--cCCCHHHHHHHhhcCCCCCCCCCC-CccccCCC----C--------CCcccccccccCccHHHHHHHHHhhhcC---
Q 016909 102 W--RGFSMQEFANQCFGNKADYGKGRQ-MPIHYGSN----K--------HNYFTVSSTIATQLPHAVGAAYALKMDR--- 163 (380)
Q Consensus 102 ~--~G~~~~~~l~e~~g~~~~~~~G~~-~~~H~~~~----~--------~~~~~~~g~lG~~~p~AvG~A~A~k~~~--- 163 (380)
+ .-.+++++|++|.|. .....|+| ..+|++.. . ..+..+.++|.+.-|+.+|...|.++..
T Consensus 319 ~NVvRKpl~qIfseF~g~-~~~DeGSGDVKYHLG~~~~R~~r~s~k~i~LslVANPSHLEA~DPVV~GKtrA~q~y~~D~ 397 (1017)
T KOG0450|consen 319 ANVVRKPLEQIFSEFSGL-EAADEGSGDVKYHLGMYYERPNRVSGKNITLSLVANPSHLEAVDPVVMGKTRAEQFYTGDE 397 (1017)
T ss_pred HHHHhhHHHHHHHhccCC-CCCcCCCCceeeeeccccccccccCCceeEEEEecCchhhcccCceeechHHHHHHhcccc
Confidence 7 347899999999984 33333554 66776641 1 2356788999999999999999988753
Q ss_pred --CCceeEEEeCcccc-CcchHHHHHHHHHHcCC---CEEEEEEcCCcceeeecccccCCcCHHHHHhhcCeeEEEEeCC
Q 016909 164 --KDACAVTYFGDGGT-SEGDFHAALNFSAVTEA---PVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGN 237 (380)
Q Consensus 164 --~~~~vv~~~GDG~~-~eG~~~Eal~~A~~~~L---pvi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~G~~~~~VdG~ 237 (380)
.+...|.++||++| .||.++|.+.+...-+. ..|+||.|||++++|...-..+.+...+.|++.+.|.++|+++
T Consensus 398 ~~~k~m~ILiHGDaaFAgQGVVyET~hls~LP~YtT~GTvHvVvNNQIgFTTDPR~aRSspYcTDvar~v~aPIFHVNaD 477 (1017)
T KOG0450|consen 398 EGKKVMGILIHGDAAFAGQGVVYETFHLSDLPSYTTGGTVHVVVNNQIGFTTDPRFARSSPYCTDVARVVNAPIFHVNAD 477 (1017)
T ss_pred ccceeEEEEEecchhhccCceEEEeeccccCCCcccCCeEEEEEccccccccCcccccCCCCchhHHHHhCCCeEeecCC
Confidence 34578999999999 79999999998776443 5999999999999988777777777789999999999999999
Q ss_pred CHHHHHHHHHHHHHHhhccCCcEEEEEEeecCCCCCCCCCCCCCCChhHHHHHHhCCChHHHHHHHHHHCCCCCHHHHHH
Q 016909 238 DALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDDSTKYRPVDEIEWWRTTQDPVTRFRKWIESNGWWNGDIESE 317 (380)
Q Consensus 238 D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R~~gHs~~Dd~~~Yr~~~e~~~~~~~~DPi~~~~~~L~~~g~~t~~~~~~ 317 (380)
|+++|.-+++-|.+.....++.++|+++|||.+||++.|.| .+..+-.++.+++.+..+..|.+.|+++|.+|++++++
T Consensus 478 D~EAV~~vc~vAAeWR~tFh~DvVVDlVcyRR~GHNE~DeP-~FTQPlMYk~I~k~~~~l~~Y~ekLl~egtvs~~evd~ 556 (1017)
T KOG0450|consen 478 DPEAVMHVCKVAAEWRKTFHKDVVVDLVCYRRHGHNEIDEP-MFTQPLMYKQIRKHKPVLQKYAEKLLSEGTVSQQEVDE 556 (1017)
T ss_pred ChHHHHHHHHHHHHHHHHhccCeEEEEEEEeecCCCcccCc-cccchHHHHHHHcCCcHHHHHHHHHHhcCcccHHHHHH
Confidence 99999999999999988999999999999999999999987 57888899999877788899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCCCcccccc----ccC----------CCccHHHHHHHHHHHHHhCCCCCCCCC
Q 016909 318 LRSSVRKQILHALQEAEKAEKPPISDLFTDV----YDV----------SPSNLREQEHSLRETIKKHPQDYPSNV 378 (380)
Q Consensus 318 i~~~~~~~v~~a~~~a~~~~~p~~~~~~~~v----y~~----------~~~~~~~~~~~l~~~~~~~p~~~~~~~ 378 (380)
+.+.+..-+++|++.++++..-...+-++.- +.+ .+....+.+..+...+-..|++|++|.
T Consensus 557 ~~~k~~~I~eeafe~sKd~~~~~~rdWL~spW~gF~spd~~~~i~~~~~Tgv~~e~L~~ig~~~ss~PE~F~~Hr 631 (1017)
T KOG0450|consen 557 EIKKYDNILEEAFERSKDYKPLHIRDWLDSPWPGFFSPDGQPKILPCPSTGVKEEILKHIGKVASSVPEGFKIHR 631 (1017)
T ss_pred HHHHHHHHHHHHHHhhccccchhhhhhhcCCCccccCccCCCccccCCCCCCCHHHHHHHHHhhccCCcccchhh
Confidence 9999999999999999876432212222222 221 122345678889999999999999875
No 18
>KOG0451 consensus Predicted 2-oxoglutarate dehydrogenase, E1 subunit [Carbohydrate transport and metabolism]
Probab=99.97 E-value=9.1e-30 Score=252.64 Aligned_cols=341 Identities=16% Similarity=0.157 Sum_probs=265.2
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccchhHHHHHHHHhcC------CCCcEEEcc-ccchHHHHH-
Q 016909 31 VKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRISFYLTTSGEEAINIASAAAI------KNDDFVVPQ-YREPGVLLW- 102 (380)
Q Consensus 31 ~~~~~~~l~~~y~~M~~~R~~e~~~~~~~~~g~i~~~~~~~GqEa~~~~~~~~l------~~~D~v~~~-yR~~~~~l~- 102 (380)
..+.++++.++-+.|+++..||.++...|.+-| .| .+.|-|.+.+=....| +.+|+|+++ |||+..++.
T Consensus 152 e~l~keEr~~i~~Lmlksq~fD~FlatKFpTvK--RY-GgEGAESM~aFF~eLl~~sa~~~ie~viigmpHRGRlnLlt~ 228 (913)
T KOG0451|consen 152 EQLGKEERCEIAELMLKSQAFDNFLATKFPTVK--RY-GGEGAESMLAFFWELLRDSAQANIEHVIIGMPHRGRLNLLTA 228 (913)
T ss_pred HHhhHHHHHHHHHHHHhhhhHHHHHHhccchhh--hh-ccccHHHHHHHHHHHHHHHHhcCcceEEEeccccCcchHHHH
Confidence 358899999999999999999999988876432 11 2445555433222222 367999995 999988875
Q ss_pred -cCCCHHHHHHHhhcCCCCCCC---CCCCccccCCC--------C--CCcccccccccCccHHHHHHHHHhhhcC-----
Q 016909 103 -RGFSMQEFANQCFGNKADYGK---GRQMPIHYGSN--------K--HNYFTVSSTIATQLPHAVGAAYALKMDR----- 163 (380)
Q Consensus 103 -~G~~~~~~l~e~~g~~~~~~~---G~~~~~H~~~~--------~--~~~~~~~g~lG~~~p~AvG~A~A~k~~~----- 163 (380)
..+++..||..+.|.+..+.. -+..-+|+.+. + .-+.++.+++.+..|+|+|.+.+.+...
T Consensus 229 Ll~fpP~~mFRK~~G~sEFpE~~~A~gDVlSHl~sS~dykg~~~~lhvtMlpNPSHLEAvNPVAmGKtR~rqqsr~~Gdy 308 (913)
T KOG0451|consen 229 LLNFPPAKMFRKLSGASEFPEDIEAMGDVLSHLHSSEDYKGLGKKLHVTMLPNPSHLEAVNPVAMGKTRSRQQSRGEGDY 308 (913)
T ss_pred HhcCCHHHHHHHhcCcccCchhhhHHHHHHHHhhhhhhhcccCCceEEEecCChhhhhccCchhhcchhHHHHhhcCCCC
Confidence 789999999999998775421 12222343321 1 2356788999999999999999876431
Q ss_pred -C--------CceeEEEeCcccc-CcchHHHHHHHHHH--cCC-CEEEEEEcCCcceeeecccccCCcCHHHHHhhcCee
Q 016909 164 -K--------DACAVTYFGDGGT-SEGDFHAALNFSAV--TEA-PVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVR 230 (380)
Q Consensus 164 -~--------~~~vv~~~GDG~~-~eG~~~Eal~~A~~--~~L-pvi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~G~~ 230 (380)
+ .-..+.++|||+| .||.++|+++++-. +++ ..|++|.||+.+.+++.+...+...-++++++++++
T Consensus 309 spd~sa~~Gd~Vlnv~vHGDaaF~GQGiv~E~~~ls~~PHFrvGGsvHLivNNQvgfTtp~~rGRSs~ycsDiaK~~~~p 388 (913)
T KOG0451|consen 309 SPDSSAPFGDHVLNVIVHGDAAFAGQGIVQECLNLSYVPHFRVGGSVHLIVNNQVGFTTPGDRGRSSAYCSDIAKSIQAP 388 (913)
T ss_pred CCCCcCCCCCceEEEEEecchhhccCcccHHHHhhccCCceeecceEEEEecccccccCcccccccchhhhHHHHHhCCC
Confidence 1 1256788999998 79999999999864 567 699999999999999999888777788999999999
Q ss_pred EEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCCCCCCCCCCCCCCChhHHHHHHhCCChHH-HHHHHHHHCCC
Q 016909 231 SIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDDSTKYRPVDEIEWWRTTQDPVT-RFRKWIESNGW 309 (380)
Q Consensus 231 ~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R~~gHs~~Dd~~~Yr~~~e~~~~~~~~DPi~-~~~~~L~~~g~ 309 (380)
+++|+|.|+++|.++.+-|+++.|+.++.++|++.|||.+||++.||| .|.++-.++..+ ++..++ .|.+.|+++|+
T Consensus 389 viHVNGD~PEevvraTrLAf~Yqr~FRKDvfIdL~CfRrwgHnelddp-~ftspvmyk~v~-aReSvPdlya~~L~~eg~ 466 (913)
T KOG0451|consen 389 VIHVNGDDPEEVVRATRLAFRYQREFRKDVFIDLNCFRRWGHNELDDP-TFTSPVMYKEVE-ARESVPDLYAQQLAKEGV 466 (913)
T ss_pred EEEeCCCCHHHHHHHHHHHHHHHHHhhhhheeehHHHHHhccccccCc-cccChhHHHHHH-hhhcccHHHHHHHHhccc
Confidence 999999999999999999999999999999999999999999999998 589999888886 466665 57999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCccccccccCC---C-----cc---HHHHHHHHHHHHHhCCCCCCCCC
Q 016909 310 WNGDIESELRSSVRKQILHALQEAEKAEKPPISDLFTDVYDVS---P-----SN---LREQEHSLRETIKKHPQDYPSNV 378 (380)
Q Consensus 310 ~t~~~~~~i~~~~~~~v~~a~~~a~~~~~p~~~~~~~~vy~~~---~-----~~---~~~~~~~l~~~~~~~p~~~~~~~ 378 (380)
+|++++++++++..+.+.+.++.+..+.+|+. -++.-|... | |. ...-+..+...-...|++|+.|+
T Consensus 467 ~tee~vkE~~~~y~~~Ln~eL~~~~~y~Pp~~--~~~~~W~gf~qapk~it~WdTGv~~dLLrfiG~~SV~vPedf~~H~ 544 (913)
T KOG0451|consen 467 LTEEKVKEMRDEYMKYLNEELALAPAYQPPPS--YFEKQWTGFQQAPKEITYWDTGVDYDLLRFIGQQSVTVPEDFNIHP 544 (913)
T ss_pred ccHHHHHHHHHHHHHHHHHHHhcCCccCCCch--hhHHhhhhhccChhhhcccccCcchHHHHHhccCceecchhccccH
Confidence 99999999999999999999988887654432 233333221 1 11 11234455555577888888764
No 19
>COG0567 SucA 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, and related enzymes [Energy production and conversion]
Probab=99.97 E-value=1.5e-28 Score=258.42 Aligned_cols=342 Identities=14% Similarity=0.138 Sum_probs=278.4
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCcccccccchhHHHHHHHHhcC------CCCcEEEcc-ccchHHHH
Q 016909 30 FVKVSEGVAIKMYNDMVTLQTMDTIFYEAQR-QGRISFYLTTSGEEAINIASAAAI------KNDDFVVPQ-YREPGVLL 101 (380)
Q Consensus 30 ~~~~~~~~l~~~y~~M~~~R~~e~~~~~~~~-~g~i~~~~~~~GqEa~~~~~~~~l------~~~D~v~~~-yR~~~~~l 101 (380)
.+.++.|+.+.+|+.+..+..||+++...|. ++| | +..|-|+...++-..+ +..++|+++ |||+.+.|
T Consensus 169 ~~~~~~e~k~~~l~~L~~ae~fE~fl~~kf~g~KR--F--slEG~eslip~l~~~i~~~~~~G~~~vviGMaHRGRLNvL 244 (906)
T COG0567 169 KPTFTAEEKKAILKRLTAAEGFERFLHTKFPGAKR--F--SLEGGESLIPMLDELIDRAGKQGVKEVVIGMAHRGRLNVL 244 (906)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHhhccCCCCcc--c--cccchhhHHHHHHHHHHHHHhcCcceEEecccccchHHHH
Confidence 4578999999999999999999999988875 443 3 4578888877765544 467999996 99999888
Q ss_pred H--cCCCHHHHHHHhhcCCCCCCCCCCCccccCCC----------CCCcccccccccCccHHHHHHHHHhhhcCCC----
Q 016909 102 W--RGFSMQEFANQCFGNKADYGKGRQMPIHYGSN----------KHNYFTVSSTIATQLPHAVGAAYALKMDRKD---- 165 (380)
Q Consensus 102 ~--~G~~~~~~l~e~~g~~~~~~~G~~~~~H~~~~----------~~~~~~~~g~lG~~~p~AvG~A~A~k~~~~~---- 165 (380)
. .|.+++.+|+||.|+......-+...+|++.. ...+..++++|....|+..|.+.|.+....+
T Consensus 245 ~nvlgKp~~~if~eF~g~~~~~~~sGDVKYH~G~~~~~~~~~~~v~l~La~NPSHLE~v~PVV~G~vRa~Qd~~~d~~~~ 324 (906)
T COG0567 245 VNVLGKPYRDIFDEFEGKSAEPDLSGDVKYHLGFSSDRQTDGGKVHLSLAFNPSHLEIVNPVVEGSVRAKQDRLGDTERD 324 (906)
T ss_pred HHHhCCCHHHHHHHhCCCCCCCCcccccccccccccccccCCCeeEEEecCCcchhhhhchhhhcchHhhhhhhccCccc
Confidence 6 89999999999999754332233456665531 1234667899999999999999998765322
Q ss_pred -ceeEEEeCcccc-CcchHHHHHHHHHHc--CC-CEEEEEEcCCcceeeecccccCCcCHHHHHhhcCeeEEEEeCCCHH
Q 016909 166 -ACAVTYFGDGGT-SEGDFHAALNFSAVT--EA-PVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDAL 240 (380)
Q Consensus 166 -~~vv~~~GDG~~-~eG~~~Eal~~A~~~--~L-pvi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~G~~~~~VdG~D~~ 240 (380)
...+.++||.++ +||.+.|.||+...- .. +.|+||.||+.+.+|......+.+...+.|+.++.|+++|+|.||+
T Consensus 325 k~lpiliHGDAAfaGQGVV~Etlnls~~~gysvgGtiHiviNNQiGFTTsp~~sRSt~Y~TDvAKm~~aPifHVN~DDPE 404 (906)
T COG0567 325 KVLPILIHGDAAFAGQGVVAETLNLSRLDGYSVGGTWHIVINNQIGFTTSPADARSTPYCTDVAKMIEAPIFHVNADDPE 404 (906)
T ss_pred eeEEEEEecChhcCCccHHHHHHHhhCCCCcccCCeEEEEEecCCCCCCCcccccCCCCCCChhhccCCceeecccCCch
Confidence 456799999999 799999999999874 45 8999999999999998666666676779999999999999999999
Q ss_pred HHHHHHHHHHHHhhccCCcEEEEEEeecCCCCCCCCCCCCCCChhHHHHHHhCCChHHHHHHHHHHCCCCCHHHHHHHHH
Q 016909 241 AIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDDSTKYRPVDEIEWWRTTQDPVTRFRKWIESNGWWNGDIESELRS 320 (380)
Q Consensus 241 av~~a~~~A~~~ar~~~gP~lIe~~t~R~~gHs~~Dd~~~Yr~~~e~~~~~~~~DPi~~~~~~L~~~g~~t~~~~~~i~~ 320 (380)
++..+.+.|++++..++++++|++.|||.+||+++|+|. +..+..++.+++...+...|.+.|+++|++|+++++.+.+
T Consensus 405 Av~~a~~~A~e~R~~F~kDvvIDlvcYRr~GHNE~DePs-~TqP~mY~~I~~h~t~r~~ya~~Lv~~gvis~~~~~~~~~ 483 (906)
T COG0567 405 AVLFAPALALEYRNGFKKDVVIDLVCYRRHGHNEGDEPS-VTQPLMYQKIKKHPTVRKLYADKLIAEGVISEEEADELVN 483 (906)
T ss_pred hhhhhHHHHHHHHhhcCCCeeeecccCCCCCCCcccccc-ccCHHHHHHHhcCCChhhhHHHHHHhhccccHHHHHHHHH
Confidence 999999999999999999999999999999999999985 5677888999877888999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCccccccccC---------CCccHHHHHHHHHHHHHhCCCCCCCCCC
Q 016909 321 SVRKQILHALQEAEKAEKPPISDLFTDVYDV---------SPSNLREQEHSLRETIKKHPQDYPSNVP 379 (380)
Q Consensus 321 ~~~~~v~~a~~~a~~~~~p~~~~~~~~vy~~---------~~~~~~~~~~~l~~~~~~~p~~~~~~~~ 379 (380)
+++..++..+...+... .-+-+...+.. .+....+.++.|...+...|+.|..|+.
T Consensus 484 ~~r~~L~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~t~v~~~~L~~L~~kl~~~Pe~f~~h~~ 548 (906)
T COG0567 484 DYRDALDQGFEVVKEYK---EMDWLEGDWSGYLNAGLRHVDTGVPKKTLKELGKKLCTIPEGFEVHPR 548 (906)
T ss_pred HHHHHhhhhhhHHhHHH---hhhccccccccccCCcccccccccCHHHHHHHHHHhhcCCcceehhHH
Confidence 99999999887766543 11111111111 1122346688899999999999998853
No 20
>PRK12754 transketolase; Reviewed
Probab=99.96 E-value=5.1e-28 Score=255.36 Aligned_cols=175 Identities=26% Similarity=0.310 Sum_probs=149.7
Q ss_pred cEEEccccchH------HHHHcCC--CHHHHHHHhhcCCCCCCCCCCCccccCC-CCCCcccccccccCccHHHHHHHHH
Q 016909 88 DFVVPQYREPG------VLLWRGF--SMQEFANQCFGNKADYGKGRQMPIHYGS-NKHNYFTVSSTIATQLPHAVGAAYA 158 (380)
Q Consensus 88 D~v~~~yR~~~------~~l~~G~--~~~~~l~e~~g~~~~~~~G~~~~~H~~~-~~~~~~~~~g~lG~~~p~AvG~A~A 158 (380)
|.++.+ .||+ .+...|+ +.+ -+.+|+. .|+.+++|+.. ..+++..++|++|+|+++|+|+|+|
T Consensus 58 DRfvlS-~GH~~~~lYa~l~~~G~~~~~e-~L~~fr~------~gs~~~gHpe~~~~pgve~stG~LGqGl~~AvG~AlA 129 (663)
T PRK12754 58 DRFVLS-NGHGSMLIYSLLHLTGYDLPME-ELKNFRQ------LHSKTPGHPEVGYTAGVETTTGPLGQGIANAVGMAIA 129 (663)
T ss_pred CeEEEe-CccHHHHHHHHHHHcCCCCCHH-HHHHhcc------CCCCCCCCCCCCCCCCccccCCcccchHHHHHHHHHH
Confidence 776654 4443 2345786 554 4555654 37778999876 3678999999999999999999999
Q ss_pred hhhcC----------CCceeEEEeCccccCcchHHHHHHHHHHcCCC-EEEEEEcCCcceeeecccccCCcCHHHHHhhc
Q 016909 159 LKMDR----------KDACAVTYFGDGGTSEGDFHAALNFSAVTEAP-VIFICRNNGWAISTPISDQFRSDGAVVKGRAY 227 (380)
Q Consensus 159 ~k~~~----------~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lp-vi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~ 227 (380)
.|+.+ .+.+|+|++|||+++||.+|||+++|+.++|| +|+||+||++++++++.... .+++.+++++|
T Consensus 130 ~k~~~~~~~~~~~~~~~~~v~~~~GDGel~EG~~~EA~~~A~~~kL~nLi~ivD~N~~~idg~~~~~~-~~~~~~r~~a~ 208 (663)
T PRK12754 130 EKTLAAQFNRPGHDIVDHYTYAFMGDGCMMEGISHEVCSLAGTLKLGKLIAFYDDNGISIDGHVEGWF-TDDTAMRFEAY 208 (663)
T ss_pred HHHhhhccCcccccccCCEEEEEECcchhhchHHHHHHHHHHHhCCCCEEEEEEcCCCccCcchhhcc-CccHHHHHHhc
Confidence 99875 37899999999999999999999999999996 89999999999999998876 58999999999
Q ss_pred CeeEEE-EeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCCCCCC
Q 016909 228 GVRSIR-VDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTT 274 (380)
Q Consensus 228 G~~~~~-VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R~~gHs~ 274 (380)
||++++ |||||+++|.+|+++|... .++|++|+++|++.+|.+.
T Consensus 209 Gw~vi~vvDG~D~~ai~~A~~~a~~~---~~~Pt~I~~~T~~g~G~~~ 253 (663)
T PRK12754 209 GWHVIRGIDGHDADSIKRAVEEARAV---TDKPSLLMCKTIIGFGSPN 253 (663)
T ss_pred CCeEEeeECCCCHHHHHHHHHHHHhc---CCCCEEEEEEeeeccCccc
Confidence 999999 8999999999999887653 5799999999999999874
No 21
>TIGR00232 tktlase_bact transketolase, bacterial and yeast. This model is designed to capture orthologs of bacterial transketolases. The group includes two from the yeast Saccharomyces cerevisiae but excludes dihydroxyactetone synthases (formaldehyde transketolases) from various yeasts and the even more distant mammalian transketolases. Among the family of thiamine diphosphate-dependent enzymes that includes transketolases, dihydroxyacetone synthases, pyruvate dehydrogenase E1-beta subunits, and deoxyxylulose-5-phosphate synthases, mammalian and bacterial transketolases seem not to be orthologous.
Probab=99.96 E-value=7.5e-28 Score=255.17 Aligned_cols=179 Identities=22% Similarity=0.237 Sum_probs=148.7
Q ss_pred cEEEcc--ccchH---HHHHcCCC-HHHHHHHhhcCCCCCCCCCCCccccCC-CCCCcccccccccCccHHHHHHHHHhh
Q 016909 88 DFVVPQ--YREPG---VLLWRGFS-MQEFANQCFGNKADYGKGRQMPIHYGS-NKHNYFTVSSTIATQLPHAVGAAYALK 160 (380)
Q Consensus 88 D~v~~~--yR~~~---~~l~~G~~-~~~~l~e~~g~~~~~~~G~~~~~H~~~-~~~~~~~~~g~lG~~~p~AvG~A~A~k 160 (380)
|.++.+ |...+ .+...|+. ..+-+..|+. .|+.+++|+.. ..+++..++|++|+|+++|+|+|+|.|
T Consensus 54 DrfvlS~GH~~~~lYa~l~~~G~~~~~e~L~~fr~------~~s~~~ghp~~~~~~gi~~~tG~lG~gl~~AvG~Ala~k 127 (653)
T TIGR00232 54 DRFVLSNGHGSMLLYSLLHLTGYDLSIEDLKQFRQ------LHSKTPGHPEFGHTAGVEATTGPLGQGIANAVGMAIAQK 127 (653)
T ss_pred CeEEEECccHHHHHHHHHHHcCCCCCHHHHHhccc------CCCCCCCCCCCCCCCCeeeCCcchhccHHHHHHHHHHHH
Confidence 775554 43322 34457864 4444556654 37778999976 467888899999999999999999999
Q ss_pred hcC----------CCceeEEEeCccccCcchHHHHHHHHHHcCCC-EEEEEEcCCcceeeecccccCCcCHHHHHhhcCe
Q 016909 161 MDR----------KDACAVTYFGDGGTSEGDFHAALNFSAVTEAP-VIFICRNNGWAISTPISDQFRSDGAVVKGRAYGV 229 (380)
Q Consensus 161 ~~~----------~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lp-vi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~G~ 229 (380)
+.+ .+.+|+|++|||+++||.+|||+++|+.++|| +|+||+||+|++++++.... .+++.+++++|||
T Consensus 128 ~~~~~~~~~~~~~~~~~v~~~~GDG~l~EG~~~EA~~~A~~~~L~nLi~ivd~N~~~i~~~~~~~~-~~~~~~~~~a~Gw 206 (653)
T TIGR00232 128 TLAATFNKPGFEIVDHYTYVFVGDGCLQEGISYEVASLAGHLKLGKLIVLYDSNRISIDGAVDGSF-TEDVAKRFEAYGW 206 (653)
T ss_pred HHhhhccCCccCCcCCEEEEEEccccccccHHHHHHHHHHHhCCCcEEEEEeCCCeeecccccccc-CccHHHHHHhcCC
Confidence 863 37789999999999999999999999999996 99999999999999998876 5889999999999
Q ss_pred eEEEE-eCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCCCCCCCC
Q 016909 230 RSIRV-DGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSD 276 (380)
Q Consensus 230 ~~~~V-dG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R~~gHs~~D 276 (380)
++++| ||||+.++.+|+++|.+ ..++|++|+++|+|.+|.+...
T Consensus 207 ~~~~v~DG~D~~ai~~A~~~a~~---~~~~P~~I~~~T~~g~G~~~~e 251 (653)
T TIGR00232 207 EVLEVEDGHDLAAIDAAIEEAKA---SKDKPTLIEVTTTIGFGSPNKA 251 (653)
T ss_pred cEEEeCCCCCHHHHHHHHHHHHh---CCCCCEEEEEEeeecccCcccC
Confidence 99999 99999999988887653 1248999999999999986443
No 22
>PF00456 Transketolase_N: Transketolase, thiamine diphosphate binding domain; InterPro: IPR005474 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; PDB: 3M49_B 1NGS_B 1TKA_A 1TRK_B 1TKB_A 1GPU_B 1AY0_B 1TKC_B 3HYL_A 3RIM_A ....
Probab=99.96 E-value=2.2e-28 Score=239.17 Aligned_cols=179 Identities=28% Similarity=0.345 Sum_probs=141.1
Q ss_pred CcEEEccccchH------HHHHcCC-CHHHHHHHhhcCCCCCCCCCCCccccC-CCCCCcccccccccCccHHHHHHHHH
Q 016909 87 DDFVVPQYREPG------VLLWRGF-SMQEFANQCFGNKADYGKGRQMPIHYG-SNKHNYFTVSSTIATQLPHAVGAAYA 158 (380)
Q Consensus 87 ~D~v~~~yR~~~------~~l~~G~-~~~~~l~e~~g~~~~~~~G~~~~~H~~-~~~~~~~~~~g~lG~~~p~AvG~A~A 158 (380)
.|.++.+ .||+ .+...|+ ...+-+..++. .|+.+++|+. ...+++..++|+||+|+++|+|+|+|
T Consensus 54 rDrfvlS-kGH~~~~lYa~l~~~G~~~~~~~L~~fr~------~~s~~~gHP~~~~~~gie~stGsLGqGl~~avG~Ala 126 (332)
T PF00456_consen 54 RDRFVLS-KGHASPALYAILALRGYDLSEEDLKTFRQ------LGSRLPGHPEYGKTPGIEASTGSLGQGLSIAVGMALA 126 (332)
T ss_dssp S-EEEES-SGGGHHHHHHHHHHTTSSS-HHHHTTTTS------TTSSSSSSTTTTTSTT-SS--SSTTHHHHHHHHHHHH
T ss_pred CCcEEEe-ccchhHHHHHHHHHhcCCCCHHHHHHhcc------CCCCCCCCCcccCCceeEeeccchhcchhhHHHHHHH
Confidence 4776665 5553 3334787 55555666654 4788999998 45788999999999999999999999
Q ss_pred hhhcC----------CCceeEEEeCccccCcchHHHHHHHHHHcCC-CEEEEEEcCCcceeeecccccCCcCHHHHHhhc
Q 016909 159 LKMDR----------KDACAVTYFGDGGTSEGDFHAALNFSAVTEA-PVIFICRNNGWAISTPISDQFRSDGAVVKGRAY 227 (380)
Q Consensus 159 ~k~~~----------~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~L-pvi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~ 227 (380)
.|+.+ -+.+|+|++|||+++||.+|||+.+|+.++| ++|+|+++|+.++++++.... ..++.+++++|
T Consensus 127 ~k~~~~~~n~~~~~~~~~~vy~l~GDGel~EG~~~EA~~~A~~~~L~nLi~i~D~N~~q~dg~~~~~~-~~~~~~k~~a~ 205 (332)
T PF00456_consen 127 EKMLGARFNKPGFDIIDHRVYVLMGDGELQEGSVWEAASLAGHYKLDNLIVIYDSNGIQIDGPTDIVF-SEDIAKKFEAF 205 (332)
T ss_dssp HHHHHHHHHBTTBSTTT--EEEEEEHHHHHSHHHHHHHHHHHHTT-TTEEEEEEEESEETTEEGGGTH-HSHHHHHHHHT
T ss_pred HHHHHhhhcccccccccceEEEEecCccccchhhHHHHHHHHHhCCCCEEEEEecCCcccCCCccccc-chHHHHHHHHh
Confidence 98742 2578999999999999999999999999999 799999999999999987654 46899999999
Q ss_pred CeeEEEE-eCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCCCCCCCC
Q 016909 228 GVRSIRV-DGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSD 276 (380)
Q Consensus 228 G~~~~~V-dG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R~~gHs~~D 276 (380)
||.+++| ||||+++|.+|+.+|... .++|++|.++|...+|.+...
T Consensus 206 Gw~v~~v~dGhd~~~i~~A~~~a~~~---~~kP~~Ii~~TvkG~G~~~~e 252 (332)
T PF00456_consen 206 GWNVIEVCDGHDVEAIYAAIEEAKAS---KGKPTVIIARTVKGKGVPFME 252 (332)
T ss_dssp T-EEEEEEETTBHHHHHHHHHHHHHS---TSS-EEEEEEE-TTTTSTTTT
T ss_pred hhhhcccccCcHHHHHHHHHHHHHhc---CCCCceeecceEEecCchhhc
Confidence 9999998 999999999999998652 479999999999999986543
No 23
>PRK12753 transketolase; Reviewed
Probab=99.96 E-value=1.2e-27 Score=253.56 Aligned_cols=180 Identities=22% Similarity=0.214 Sum_probs=151.4
Q ss_pred CcEEEcc--ccc---hHHHHHcCC-CHHHHHHHhhcCCCCCCCCCCCccccCC-CCCCcccccccccCccHHHHHHHHHh
Q 016909 87 DDFVVPQ--YRE---PGVLLWRGF-SMQEFANQCFGNKADYGKGRQMPIHYGS-NKHNYFTVSSTIATQLPHAVGAAYAL 159 (380)
Q Consensus 87 ~D~v~~~--yR~---~~~~l~~G~-~~~~~l~e~~g~~~~~~~G~~~~~H~~~-~~~~~~~~~g~lG~~~p~AvG~A~A~ 159 (380)
.|.++.+ |.. .+++...|+ ...+-|..|+. .|+.+++|+.. ..+++..++|++|+|+++|+|+|+|.
T Consensus 57 rDrfvls~GH~~~~lYa~l~~~G~~~~~e~L~~fr~------~~s~~~ghp~~~~~pgve~~tG~lG~gl~~AvG~A~A~ 130 (663)
T PRK12753 57 RDRFILSNGHASMLLYSLLHLTGYDLPIEELKNFRQ------LHSKTPGHPEIGYTPGVETTTGPLGQGLANAVGLAIAE 130 (663)
T ss_pred CCcEEEecccHHHHHHHHHHHhCCCCCHHHHHHhcc------CCCCCCCCCCCCCCCCcccCCCcccccHHHHHHHHHHH
Confidence 3665543 554 234556785 44455666664 36778899876 46788999999999999999999999
Q ss_pred hhcCC----------CceeEEEeCccccCcchHHHHHHHHHHcCCC-EEEEEEcCCcceeeecccccCCcCHHHHHhhcC
Q 016909 160 KMDRK----------DACAVTYFGDGGTSEGDFHAALNFSAVTEAP-VIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 228 (380)
Q Consensus 160 k~~~~----------~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lp-vi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~G 228 (380)
|+.+. +.+|+|++|||+++||.+|||+++|+.++|| +|+||+||++++++++.... .+++.+++++||
T Consensus 131 k~~~~~~~~~~~~~~~~~v~~~~GDGel~EG~~~EA~~~A~~~kL~nLi~ivd~N~~~i~~~~~~~~-~~~~~~~f~a~G 209 (663)
T PRK12753 131 RTLAAQFNRPGHEIVDHYTYVFMGDGCLMEGISHEVCSLAGTLGLGKLIGFYDHNGISIDGETEGWF-TDDTAKRFEAYH 209 (663)
T ss_pred HHhhhhcCCccccccCCEEEEEECcCccccHHHHHHHHHHHHHCCCCEEEEEECCCCcCCCChhhhc-ChhHHHHHHHcC
Confidence 98752 6899999999999999999999999999995 99999999999999998765 578999999999
Q ss_pred eeEEE-EeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCCCCCCCC
Q 016909 229 VRSIR-VDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSD 276 (380)
Q Consensus 229 ~~~~~-VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R~~gHs~~D 276 (380)
|+++. |||||+.++++|+++|.+. .++|++|+++|++.+|++...
T Consensus 210 w~~~~~vDGhD~~~i~~a~~~a~~~---~~~P~~I~~~T~kG~G~~~~e 255 (663)
T PRK12753 210 WHVIHEIDGHDPQAIKEAILEAQSV---KDKPSLIICRTIIGFGSPNKA 255 (663)
T ss_pred CeEEceeCCCCHHHHHHHHHHHHHC---CCCeEEEEEEEeecCCCCccc
Confidence 99995 9999999999999998753 579999999999999998543
No 24
>cd02012 TPP_TK Thiamine pyrophosphate (TPP) family, Transketolase (TK) subfamily, TPP-binding module; TK catalyzes the transfer of a two-carbon unit from ketose phosphates to aldose phosphates. In heterotrophic organisms, TK provides a link between glycolysis and the pentose phosphate pathway and provides precursors for nucleotide, aromatic amino acid and vitamin biosynthesis. In addition, the enzyme plays a central role in the Calvin cycle in plants. Typically, TKs are homodimers. They require TPP and divalent cations, such as magnesium ions, for activity.
Probab=99.96 E-value=1.5e-27 Score=226.51 Aligned_cols=181 Identities=27% Similarity=0.301 Sum_probs=152.9
Q ss_pred CcEEE-c-cccchH---HHHHcCCCHHHHHHHhhcCCCCCCCCCCCccccCCCC-CCcccccccccCccHHHHHHHHHhh
Q 016909 87 DDFVV-P-QYREPG---VLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNK-HNYFTVSSTIATQLPHAVGAAYALK 160 (380)
Q Consensus 87 ~D~v~-~-~yR~~~---~~l~~G~~~~~~l~e~~g~~~~~~~G~~~~~H~~~~~-~~~~~~~g~lG~~~p~AvG~A~A~k 160 (380)
.|.++ + .|...+ .+...|+..++-+..+.. .|+.+++|+.... +++...+|++|+++|+|+|+|+|.|
T Consensus 49 rd~~v~s~gH~~~~~ya~l~~~g~~~~~~l~~~~~------~gs~l~gh~~~~~~~g~~~~~GslG~gl~~avG~Ala~~ 122 (255)
T cd02012 49 RDRFVLSKGHASPALYAVLALAGYLPEEDLKTFRQ------LGSRLPGHPEYGLTPGVEVTTGSLGQGLSVAVGMALAEK 122 (255)
T ss_pred CCeEEEcCCcHHHHHHHHHHHcCCCCHHHHHHhcc------cCCCCCCCCCCCCCCCeeeCCcchhhHHHHHHHHHHHHH
Confidence 36543 3 255444 455688766666666654 3667888987644 4778889999999999999999999
Q ss_pred hcCCCceeEEEeCccccCcchHHHHHHHHHHcCCC-EEEEEEcCCcceeeecccccCCcCHHHHHhhcCeeEEEEeCCCH
Q 016909 161 MDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAP-VIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDA 239 (380)
Q Consensus 161 ~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lp-vi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~G~~~~~VdG~D~ 239 (380)
+.+++++|+|++|||++++|.+||++++|+.++|| +++|++||+|++++++.......++++++++|||+++.|||||+
T Consensus 123 ~~~~~~~v~~i~GDG~~~~G~~~eal~~a~~~~l~~li~vvdnN~~~~~~~~~~~~~~~~~~~~~~a~G~~~~~v~G~d~ 202 (255)
T cd02012 123 LLGFDYRVYVLLGDGELQEGSVWEAASFAGHYKLDNLIAIVDSNRIQIDGPTDDILFTEDLAKKFEAFGWNVIEVDGHDV 202 (255)
T ss_pred HhCCCCEEEEEECcccccccHHHHHHHHHHHcCCCcEEEEEECCCccccCcHhhccCchhHHHHHHHcCCeEEEECCCCH
Confidence 99999999999999999999999999999999995 99999999999998876666778999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhccCCcEEEEEEeecCCCCCCCC
Q 016909 240 LAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSD 276 (380)
Q Consensus 240 ~av~~a~~~A~~~ar~~~gP~lIe~~t~R~~gHs~~D 276 (380)
+++.+++++|.+. .++|++|+++|.+..||+..+
T Consensus 203 ~~l~~al~~a~~~---~~~P~~I~~~t~kg~g~~~~e 236 (255)
T cd02012 203 EEILAALEEAKKS---KGKPTLIIAKTIKGKGVPFME 236 (255)
T ss_pred HHHHHHHHHHHHc---CCCCEEEEEEeecccccCccC
Confidence 9999999988753 278999999999999998554
No 25
>PTZ00089 transketolase; Provisional
Probab=99.96 E-value=2e-27 Score=252.21 Aligned_cols=195 Identities=22% Similarity=0.206 Sum_probs=160.8
Q ss_pred CcEEEcc--ccc---hHHHHHcCC-CHHHHHHHhhcCCCCCCCCCCCccccCC-CCCCcccccccccCccHHHHHHHHHh
Q 016909 87 DDFVVPQ--YRE---PGVLLWRGF-SMQEFANQCFGNKADYGKGRQMPIHYGS-NKHNYFTVSSTIATQLPHAVGAAYAL 159 (380)
Q Consensus 87 ~D~v~~~--yR~---~~~~l~~G~-~~~~~l~e~~g~~~~~~~G~~~~~H~~~-~~~~~~~~~g~lG~~~p~AvG~A~A~ 159 (380)
.|.++.+ |.. .+++...|+ ...+-+..+++ .|+..++|+.. ..+++..++|++|+++++|+|+|+|.
T Consensus 59 rDr~vls~GH~~~~lYa~l~l~G~~~~~~~l~~fr~------~~s~~~ghp~~~~~~gv~~~tG~lG~gls~AvG~A~a~ 132 (661)
T PTZ00089 59 RDRFVLSNGHASALLYSMLHLTGYDLSMEDLKNFRQ------LGSRTPGHPERHITPGVEVTTGPLGQGIANAVGLAIAE 132 (661)
T ss_pred CCEEEEeCcchHHHHHHHHHHcCCCCCHHHHHhcCC------CCCCCCCCCCCCCCCCcccCCcchhhhHHHHHHHHHHH
Confidence 4775543 666 455667886 44455666665 35667888875 35788889999999999999999999
Q ss_pred hhcCC----------CceeEEEeCccccCcchHHHHHHHHHHcCCC-EEEEEEcCCcceeeecccccCCcCHHHHHhhcC
Q 016909 160 KMDRK----------DACAVTYFGDGGTSEGDFHAALNFSAVTEAP-VIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 228 (380)
Q Consensus 160 k~~~~----------~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lp-vi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~G 228 (380)
|+.+. +.+|+|++|||+++||.+|||+|+|+.++|| +|+||+||++++++++.... .+++.+++++||
T Consensus 133 k~~~~~~~~~~~~~~~~~v~~v~GDG~l~eG~~~EAl~~A~~~~L~nLi~i~d~N~~~i~~~~~~~~-~~~~~~~f~a~G 211 (661)
T PTZ00089 133 KHLAAKFNRPGHPIFDNYVYVICGDGCLQEGVSQEALSLAGHLGLEKLIVLYDDNKITIDGNTDLSF-TEDVEKKYEAYG 211 (661)
T ss_pred HHHhhhccCccccCcCCEEEEEECccchhhHHHHHHHHHHHHhCCCCEEEEEECCCcccccCccccc-CccHHHHHHhcC
Confidence 98653 7899999999999999999999999999995 99999999999999987654 578999999999
Q ss_pred eeEEEE-eCC-CHHHHHHHHHHHHHHhhccCCcEEEEEEeecCCCCCCCCCCC---CCCChhHHHHHH
Q 016909 229 VRSIRV-DGN-DALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDDST---KYRPVDEIEWWR 291 (380)
Q Consensus 229 ~~~~~V-dG~-D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R~~gHs~~Dd~~---~Yr~~~e~~~~~ 291 (380)
|+++.| ||| |+.++++++++|.+. .++|++|+++|+|..||...+... .+.+++|++.++
T Consensus 212 ~~~i~v~dG~~D~~~l~~a~~~a~~~---~~~P~~I~~~T~kG~G~~~e~~~~~H~~~~~~~~~~~~~ 276 (661)
T PTZ00089 212 WHVIEVDNGNTDFDGLRKAIEEAKKS---KGKPKLIIVKTTIGYGSSKAGTEKVHGAPLGDEDIAQVK 276 (661)
T ss_pred CcEEEeCCCCCCHHHHHHHHHHHHhc---CCCcEEEEEEeeecCCCCcCCCCCccCCCCCHHHHHHHH
Confidence 999999 999 999999999988753 368999999999999986655322 356777877775
No 26
>PRK05899 transketolase; Reviewed
Probab=99.96 E-value=9.9e-27 Score=246.33 Aligned_cols=185 Identities=25% Similarity=0.248 Sum_probs=153.6
Q ss_pred CcEEEcc--ccc---hHHHHHcCC-CHHHHHHHhhcCCCCCCCCCCCccccCCC-CCCcccccccccCccHHHHHHHHHh
Q 016909 87 DDFVVPQ--YRE---PGVLLWRGF-SMQEFANQCFGNKADYGKGRQMPIHYGSN-KHNYFTVSSTIATQLPHAVGAAYAL 159 (380)
Q Consensus 87 ~D~v~~~--yR~---~~~~l~~G~-~~~~~l~e~~g~~~~~~~G~~~~~H~~~~-~~~~~~~~g~lG~~~p~AvG~A~A~ 159 (380)
.|.++.+ |-. .+++...|+ ..++-+..+... |+.++.|+... .+++...+|++|+++|+|+|+|+|.
T Consensus 61 ~Dr~i~s~GH~~~~~Ya~l~~~G~~~~~~~l~~~~~~------~~~~~~~p~~~~~~~~~~~~G~lG~gl~~AiG~Ala~ 134 (624)
T PRK05899 61 RDRFVLSAGHGSMLLYSLLHLAGYDLSIDDLKNFRQL------GSKTPGHPEYGHTPGVETTTGPLGQGLANAVGMALAE 134 (624)
T ss_pred CCEEEEEChhHHHHHHHHHHHcCCCCCHHHHHHhcCC------CCCCCCCCCCCCCCCeeeCCcchhhhHHHHHHHHHHH
Confidence 4777654 444 245667897 555556666432 45567887753 4677778999999999999999999
Q ss_pred hhcCC----------CceeEEEeCccccCcchHHHHHHHHHHcCCC-EEEEEEcCCcceeeecccccCCcCHHHHHhhcC
Q 016909 160 KMDRK----------DACAVTYFGDGGTSEGDFHAALNFSAVTEAP-VIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 228 (380)
Q Consensus 160 k~~~~----------~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lp-vi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~G 228 (380)
++.+. +++|+|++|||++++|.+||+|++|+.++|| +|+|++||+|+++++.... ...++.+++++||
T Consensus 135 ~~~~~~~~~~~~~~~~~~v~~v~GDG~~~~g~~~Eal~~A~~~~L~~li~v~dnN~~~~~~~~~~~-~~~~~~~~~~a~G 213 (624)
T PRK05899 135 KYLAALFNRPGLDIVDHYTYVLCGDGDLMEGISHEACSLAGHLKLGNLIVIYDDNRISIDGPTEGW-FTEDVKKRFEAYG 213 (624)
T ss_pred HHhhhhcCCccccCcCCeEEEEECcchhhchHHHHHHHHHHHhCCCCEEEEEECCCCccccccccc-ccccHHHHhccCC
Confidence 98776 7899999999999999999999999999996 9999999999999877643 3578999999999
Q ss_pred eeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCCCCCCCCCCCCCC
Q 016909 229 VRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDDSTKYR 282 (380)
Q Consensus 229 ~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R~~gHs~~Dd~~~Yr 282 (380)
|++++|||||+.++.+++++|.+ .++|++|+++|.|..||+..+++..|+
T Consensus 214 ~~~~~VdG~d~~~l~~al~~a~~----~~~P~vI~v~t~kg~g~~~~e~~~~~H 263 (624)
T PRK05899 214 WHVIEVDGHDVEAIDAAIEEAKA----STKPTLIIAKTIIGKGAPNKEGTHKVH 263 (624)
T ss_pred CeEEEECCCCHHHHHHHHHHHHh----cCCCEEEEEEeEeccCCccccCCCccc
Confidence 99999999999999999998875 368999999999999998776654555
No 27
>cd02007 TPP_DXS Thiamine pyrophosphate (TPP) family, DXS subfamily, TPP-binding module; 1-Deoxy-D-xylulose-5-phosphate synthase (DXS) is a regulatory enzyme of the mevalonate-independent pathway involved in terpenoid biosynthesis. Terpeniods are plant natural products with important pharmaceutical activity. DXS catalyzes a transketolase-type condensation of pyruvate with D-glyceraldehyde-3-phosphate to form 1-deoxy-D-xylulose-5-phosphate (DXP) and carbon dioxide. The formation of DXP leads to the formation of the terpene precursor IPP (isopentyl diphosphate) and to the formation of thiamine (vitamin B1) and pyridoxal (vitamin B6).
Probab=99.95 E-value=1.5e-27 Score=217.74 Aligned_cols=167 Identities=19% Similarity=0.193 Sum_probs=137.4
Q ss_pred CCcEEEcc--ccchHHHHHcCCCHHHHHHHhhcCCCCCCCCCCCccccCCCC-CCcccccccccCccHHHHHHHHHhhhc
Q 016909 86 NDDFVVPQ--YREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNK-HNYFTVSSTIATQLPHAVGAAYALKMD 162 (380)
Q Consensus 86 ~~D~v~~~--yR~~~~~l~~G~~~~~~l~e~~g~~~~~~~G~~~~~H~~~~~-~~~~~~~g~lG~~~p~AvG~A~A~k~~ 162 (380)
+.|.++.+ |...+++...|. ++-|.++.. .|+ +++|+.... +++..++|++|+++|+|+|+|+|.|++
T Consensus 24 ~rDr~ils~gH~~~~~~~~~g~--~~~l~~~~~------~~~-~~g~p~~~~~~~~~~~~G~lG~gl~~A~G~Ala~k~~ 94 (195)
T cd02007 24 PKDKIIWDVGHQAYPHKILTGR--RDQFHTLRQ------YGG-LSGFTKRSESEYDAFGTGHSSTSISAALGMAVARDLK 94 (195)
T ss_pred CCCeEEEecccHHHHHHHHHCC--HHHHhhhhc------CCC-CCCCCcCCCCCCceECCCchhhhHHHHHHHHHHHHHh
Confidence 35665554 444444555665 334555654 244 888876543 566778999999999999999999999
Q ss_pred CCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcceeeecccccCCcCHHHHHhhcCeeEEE-EeCCCHHH
Q 016909 163 RKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIR-VDGNDALA 241 (380)
Q Consensus 163 ~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~G~~~~~-VdG~D~~a 241 (380)
+.+++|+|++|||+++||++||++++|+.+++|+|+||+||+|++++++. +..++++++||.... |||+|+++
T Consensus 95 ~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~~~li~vvdnN~~~~~~~~~------~~~~~~~a~G~~~~~~vdG~d~~~ 168 (195)
T cd02007 95 GKKRKVIAVIGDGALTGGMAFEALNNAGYLKSNMIVILNDNEMSISPNVG------TPGNLFEELGFRYIGPVDGHNIEA 168 (195)
T ss_pred CCCCeEEEEEcccccccChHHHHHHHHHHhCCCEEEEEECCCcccCCCCC------CHHHHHHhcCCCccceECCCCHHH
Confidence 99999999999999999999999999999988999999999999987765 477889999999996 99999999
Q ss_pred HHHHHHHHHHHhhccCCcEEEEEEeecCCC
Q 016909 242 IYSAVHAAREMAIGEGRPILIEALTYRVGH 271 (380)
Q Consensus 242 v~~a~~~A~~~ar~~~gP~lIe~~t~R~~g 271 (380)
+.+++++|.+ .++|++|+++|.+..|
T Consensus 169 l~~a~~~a~~----~~~P~~I~~~T~kg~g 194 (195)
T cd02007 169 LIKVLKEVKD----LKGPVLLHVVTKKGKG 194 (195)
T ss_pred HHHHHHHHHh----CCCCEEEEEEEecccC
Confidence 9999988754 5799999999988765
No 28
>cd02017 TPP_E1_EcPDC_like Thiamine pyrophosphate (TPP) family, E1 of E. coli PDC-like subfamily, TPP-binding module; composed of proteins similar to the E1 component of the Escherichia coli pyruvate dehydrogenase multienzyme complex (PDC). PDC catalyzes the oxidative decarboxylation of pyruvate and the subsequent acetylation of coenzyme A to acetyl-CoA. The E1 component of PDC catalyzes the first step of the multistep process, using TPP and a divalent cation as cofactors. E. coli PDC is a homodimeric enzyme.
Probab=99.95 E-value=1.9e-26 Score=226.70 Aligned_cols=183 Identities=18% Similarity=0.123 Sum_probs=152.1
Q ss_pred hcCCC------CcEEEc-cccc---hHHHHHcCCCHHHHHHHhhcCCCCCCCCC--CCccccCCC-CC-CcccccccccC
Q 016909 82 AAIKN------DDFVVP-QYRE---PGVLLWRGFSMQEFANQCFGNKADYGKGR--QMPIHYGSN-KH-NYFTVSSTIAT 147 (380)
Q Consensus 82 ~~l~~------~D~v~~-~yR~---~~~~l~~G~~~~~~l~e~~g~~~~~~~G~--~~~~H~~~~-~~-~~~~~~g~lG~ 147 (380)
..|+. .|.|++ .|-. .+++...|+...+-|..|+.. |+ +++.|+... .+ ++..++|++|+
T Consensus 49 ~~l~~~p~~~~RDRvlSkGHas~~lYA~L~l~G~~~~edL~~fr~~------gs~p~l~g~p~~~~~~~gve~sTGSLGq 122 (386)
T cd02017 49 HFFRARGEGGGGDLVYFQGHASPGIYARAFLEGRLTEEQLDNFRQE------VGGGGLSSYPHPWLMPDFWEFPTVSMGL 122 (386)
T ss_pred HhcCCCCCCCCCCEEEeCCcccHHHHHHHHHcCCCCHHHHHhhccC------CCCCCCCCCCCCCCCCCCeeeCCchHHH
Confidence 45664 688665 2444 234556896555667777653 44 577777542 23 48889999999
Q ss_pred ccHHHHHHHHHhhh-------cCCCceeEEEeCccccCcchHHHHHHHHHHcCC-CEEEEEEcCCcceeeecccc-cCCc
Q 016909 148 QLPHAVGAAYALKM-------DRKDACAVTYFGDGGTSEGDFHAALNFSAVTEA-PVIFICRNNGWAISTPISDQ-FRSD 218 (380)
Q Consensus 148 ~~p~AvG~A~A~k~-------~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~L-pvi~vv~NN~~~i~~~~~~~-~~~~ 218 (380)
|+++|+|+|+|.|+ .+.+.+|+|++|||+++||.+||++++|+.++| ++|+|+++|++++++++... ...+
T Consensus 123 GLs~AvGmAla~r~l~a~~~~~~~~~rvyvllGDGEl~EG~vwEA~~~Ag~~kL~NLivIvD~N~~qidG~t~~v~~~~e 202 (386)
T cd02017 123 GPIQAIYQARFNRYLEDRGLKDTSDQKVWAFLGDGEMDEPESLGAIGLAAREKLDNLIFVVNCNLQRLDGPVRGNGKIIQ 202 (386)
T ss_pred HHHHHHHHHHHHHHHHhhhccCCCCCeEEEEEcccccccHHHHHHHHHHHHhCCCCEEEEEECCCCccCCcccccccCch
Confidence 99999999999998 556789999999999999999999999999999 89999999999999998875 3668
Q ss_pred CHHHHHhhcCeeEEEEe---------------------------------------------------------------
Q 016909 219 GAVVKGRAYGVRSIRVD--------------------------------------------------------------- 235 (380)
Q Consensus 219 ~~~~~a~a~G~~~~~Vd--------------------------------------------------------------- 235 (380)
++.+++++|||.+++||
T Consensus 203 ~l~~kf~AfGW~vi~V~~g~~~~~~f~~~gg~~l~~~~~~~~~~~~~~l~~~~~~~~r~~l~~~~~~~~~~~~~~~d~~~ 282 (386)
T cd02017 203 ELEGIFRGAGWNVIKVIWGSKWDELLAKDGGGALRQRMEETVDGDYQTLKAKDGAYVREHFFGKYPELKALVTDLSDEDL 282 (386)
T ss_pred hHHHHHHhcCCEEEEEecCCcchhhhccCcchHHHHHHHhcccHHHHHHhhcchHHHHHHhccccHHHHHHhhcccHHhh
Confidence 99999999999999998
Q ss_pred ------CCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCCCCC
Q 016909 236 ------GNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHT 273 (380)
Q Consensus 236 ------G~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R~~gHs 273 (380)
|||+.+|.+|+.++.+. .++|++|.++|...+|.+
T Consensus 283 ~~~~~gGhD~~~i~~A~~~a~~~---~~kPt~Iia~TikG~G~~ 323 (386)
T cd02017 283 WALNRGGHDPRKVYAAYKKAVEH---KGKPTVILAKTIKGYGLG 323 (386)
T ss_pred hhhccCCCCHHHHHHHHHHHHhC---CCCCeEEEEeCeecCCCC
Confidence 99999999999988753 468999999999999976
No 29
>PLN02790 transketolase
Probab=99.95 E-value=1.9e-26 Score=244.45 Aligned_cols=183 Identities=22% Similarity=0.214 Sum_probs=151.9
Q ss_pred CCcEEEcc--ccc---hHHHHHcCC--CHHHHHHHhhcCCCCCCCCCCCccccCC-CCCCcccccccccCccHHHHHHHH
Q 016909 86 NDDFVVPQ--YRE---PGVLLWRGF--SMQEFANQCFGNKADYGKGRQMPIHYGS-NKHNYFTVSSTIATQLPHAVGAAY 157 (380)
Q Consensus 86 ~~D~v~~~--yR~---~~~~l~~G~--~~~~~l~e~~g~~~~~~~G~~~~~H~~~-~~~~~~~~~g~lG~~~p~AvG~A~ 157 (380)
+.|.++.+ |-. .+++...|+ ...+-|..++. .|+..++|+.. ..+++..++|++|+++++|+|+|+
T Consensus 46 ~rDrfvls~GH~~~~lYa~l~~~G~~~~~~~~l~~~r~------~~s~~~ghp~~~~~pgi~~~tG~lG~gl~~A~G~A~ 119 (654)
T PLN02790 46 NRDRFVLSAGHGCMLQYALLHLAGYDSVQMEDLKQFRQ------WGSRTPGHPENFETPGIEVTTGPLGQGIANAVGLAL 119 (654)
T ss_pred CCCEEEEeCcchHHHHHHHHHHcCCCCCCHHHHHHhcc------CCCCCCCCCCCCCCCCccccCCchhchHHHHHHHHH
Confidence 45877764 555 345667887 23444666664 36677889875 467899999999999999999999
Q ss_pred Hhhh-----cCC-----CceeEEEeCccccCcchHHHHHHHHHHcCCC-EEEEEEcCCcceeeecccccCCcCHHHHHhh
Q 016909 158 ALKM-----DRK-----DACAVTYFGDGGTSEGDFHAALNFSAVTEAP-VIFICRNNGWAISTPISDQFRSDGAVVKGRA 226 (380)
Q Consensus 158 A~k~-----~~~-----~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lp-vi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a 226 (380)
|.|+ +++ +.+|+|++|||++++|.+|||+|+|+.++|| +|+||+||+|+|++++.... ..++.+++++
T Consensus 120 A~k~~~~~~~~~~~~~~~~~v~~~~GDG~l~eG~~~EAl~~A~~~~L~nli~i~d~N~~~i~~~~~~~~-~~~~~~~f~a 198 (654)
T PLN02790 120 AEKHLAARFNKPDHKIVDHYTYCILGDGCQMEGISNEAASLAGHWGLGKLIVLYDDNHISIDGDTEIAF-TEDVDKRYEA 198 (654)
T ss_pred HHHHHHHHhCCCcccccCCEEEEEECcCcccchHHHHHHHHHHHhCCCCEEEEEecCCccccCCccccc-chhHHHHHHH
Confidence 9995 342 6899999999999999999999999999995 99999999999999988654 5788999999
Q ss_pred cCeeEEEEeC--CCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCCCCCCCCCC
Q 016909 227 YGVRSIRVDG--NDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDDS 278 (380)
Q Consensus 227 ~G~~~~~VdG--~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R~~gHs~~Dd~ 278 (380)
|||+++.||| ||++++++|+++|.+. .++|++|+++|++.+|.+...++
T Consensus 199 ~G~~~~~vdgg~hd~~~l~~a~~~a~~~---~~~P~lI~~~T~kG~G~~~~e~~ 249 (654)
T PLN02790 199 LGWHTIWVKNGNTDYDEIRAAIKEAKAV---TDKPTLIKVTTTIGYGSPNKANS 249 (654)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHHHhc---CCCeEEEEEEEeecCCCccccCC
Confidence 9999999988 8999999999888653 57999999999999998754433
No 30
>PRK05444 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=99.94 E-value=5.6e-26 Score=238.64 Aligned_cols=240 Identities=19% Similarity=0.195 Sum_probs=174.6
Q ss_pred CeeEeeCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccchhHHHHHHHHhcCC-CCcEEE
Q 016909 13 PCYRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRISFYLTTSGEEAINIASAAAIK-NDDFVV 91 (380)
Q Consensus 13 ~~~~~~~~~g~~~~~~~~~~~~~~~l~~~y~~M~~~R~~e~~~~~~~~~g~i~~~~~~~GqEa~~~~~~~~l~-~~D~v~ 91 (380)
+++.+|+.=. .+.+.++++.++|.++- .-+|.+.++.. .. ..|.++--.++. |... .+-..++ +.|.++
T Consensus 2 ~~~~~~~~~~---~~~~~~~~~~~~l~~~a-~~iR~~~~~~~--~~-~~gH~g~~ls~~--~i~~-~L~~~~~~~rDr~i 71 (580)
T PRK05444 2 PKYPLLDTIN---SPADLKKLSEEELPQLA-DEIREFLIDVV--SK-TGGHLGSNLGVV--ELTV-ALHYVFDTPKDRII 71 (580)
T ss_pred CCCchhhccC---CHHHHhcCCHHHHHHHH-HHHHHHHHHHH--Hh-cCCCcCCCccHH--HHHH-HHHHhcCCCCccEE
Confidence 4556665332 23456778877766552 23344444333 32 356554322221 3332 3333443 457766
Q ss_pred cc--ccchHHHHHcCCCHHHHHHHhhcCCCCCCCCCCCccccCCC-CCCcccccccccCccHHHHHHHHHhhhc-CCCce
Q 016909 92 PQ--YREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSN-KHNYFTVSSTIATQLPHAVGAAYALKMD-RKDAC 167 (380)
Q Consensus 92 ~~--yR~~~~~l~~G~~~~~~l~e~~g~~~~~~~G~~~~~H~~~~-~~~~~~~~g~lG~~~p~AvG~A~A~k~~-~~~~~ 167 (380)
.+ |...+++...|. .+-|..++. .|+ +++|+... .+++..++|++|+++|+|+|+|+|.|++ +++++
T Consensus 72 ls~GH~~y~~~~~~g~--~~~l~~~~~------~~s-~~g~p~~~~~~~~~~~~G~lG~gl~~AvG~A~a~~~~~~~~~~ 142 (580)
T PRK05444 72 WDVGHQAYPHKILTGR--RDRFDTLRQ------KGG-LSGFPKRSESEYDTFGAGHSSTSISAALGMAKARDLKGGEDRK 142 (580)
T ss_pred EeccHHHHHHHHHhCc--HHHhcCccc------CCC-CCCCCCCCCCCCeeECCChHHHHHHHHHHHHHHHHhhCCCCCe
Confidence 54 555556667786 233444543 244 67888764 4788889999999999999999999998 58899
Q ss_pred eEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcceeeecccc---cCCcCHHHHHhhcCeeEE-EEeCCCHHHHH
Q 016909 168 AVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQ---FRSDGAVVKGRAYGVRSI-RVDGNDALAIY 243 (380)
Q Consensus 168 vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~i~~~~~~~---~~~~~~~~~a~a~G~~~~-~VdG~D~~av~ 243 (380)
|+|++|||+++||++||++++|+.+++|+|+|++||+|++++++... ....++.+++++|||+++ .|||||+++++
T Consensus 143 v~~i~GDG~l~eG~~~Eal~~A~~~~~nli~IvdnN~~~i~~~~~~~~~~~~~~~~~~~~~a~G~~~~~~vdG~d~~~l~ 222 (580)
T PRK05444 143 VVAVIGDGALTGGMAFEALNNAGDLKSDLIVILNDNEMSISPNVGALSNYLARLRSSTLFEELGFNYIGPIDGHDLDALI 222 (580)
T ss_pred EEEEEcccccccCHHHHHHHHHHhhCCCEEEEEECCCCcCCCcchhhhhhhccccHHHHHHHcCCCeeeeeCCCCHHHHH
Confidence 99999999999999999999999999999999999999998877543 233567789999999999 59999999999
Q ss_pred HHHHHHHHHhhccCCcEEEEEEeecCCCCCCC
Q 016909 244 SAVHAAREMAIGEGRPILIEALTYRVGHHTTS 275 (380)
Q Consensus 244 ~a~~~A~~~ar~~~gP~lIe~~t~R~~gHs~~ 275 (380)
++++++.+ .++|++|+++|.|..|.+..
T Consensus 223 ~al~~a~~----~~~P~lI~~~T~kg~G~~~~ 250 (580)
T PRK05444 223 ETLKNAKD----LKGPVLLHVVTKKGKGYAPA 250 (580)
T ss_pred HHHHHHHh----CCCCEEEEEEecCCcCCChh
Confidence 99987664 47999999999999997644
No 31
>COG0021 TktA Transketolase [Carbohydrate transport and metabolism]
Probab=99.93 E-value=1e-24 Score=222.33 Aligned_cols=176 Identities=25% Similarity=0.299 Sum_probs=148.0
Q ss_pred CcEEEccccchHHHH------HcCC--CHHHHHHHhhcCCCCCCCCCCCccccCC-CCCCcccccccccCccHHHHHHHH
Q 016909 87 DDFVVPQYREPGVLL------WRGF--SMQEFANQCFGNKADYGKGRQMPIHYGS-NKHNYFTVSSTIATQLPHAVGAAY 157 (380)
Q Consensus 87 ~D~v~~~yR~~~~~l------~~G~--~~~~~l~e~~g~~~~~~~G~~~~~H~~~-~~~~~~~~~g~lG~~~p~AvG~A~ 157 (380)
.|-++.+ -||+.++ ..|+ +++++ .+|+. .|+..|+||.- ..+++..++|+||+|++.|||+|+
T Consensus 59 RDRFVLS-aGHgSmllYsllhl~Gy~ls~edL-k~FRQ------~~SkTpGHPE~~~t~GVe~TTGPLGQGianAVGmAl 130 (663)
T COG0021 59 RDRFVLS-AGHGSMLLYSLLHLTGYDLSLEDL-KNFRQ------LGSKTPGHPEYGHTPGVEATTGPLGQGLANAVGMAL 130 (663)
T ss_pred CccEEec-CCchhHHHHHHHHHccCCCCHHHH-Hhhcc------CCCCCCCCCCcCCCCCeEeccCccchhHHHHHHHHH
Confidence 4666555 4565333 2454 55554 44655 37888999984 478899999999999999999999
Q ss_pred HhhhcC-----C-----CceeEEEeCccccCcchHHHHHHHHHHcCC-CEEEEEEcCCcceeeecccccCCcCHHHHHhh
Q 016909 158 ALKMDR-----K-----DACAVTYFGDGGTSEGDFHAALNFSAVTEA-PVIFICRNNGWAISTPISDQFRSDGAVVKGRA 226 (380)
Q Consensus 158 A~k~~~-----~-----~~~vv~~~GDG~~~eG~~~Eal~~A~~~~L-pvi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a 226 (380)
|.|+.. + |..++|++|||+++||..+|+..+|+.++| ++|++.++|+++|++.+...+ .+|+.+|+++
T Consensus 131 Ae~~La~~fn~~g~~ivdh~tYvl~GDGclmEGvs~EA~slAG~l~L~kLIvlyD~N~IsiDG~~~~~f-~ed~~~RfeA 209 (663)
T COG0021 131 AEKHLAALFNRPGFDIVDHYTYVLVGDGCLMEGVSHEAASLAGHLKLGKLIVLYDSNDISIDGDTSLSF-TEDVAKRFEA 209 (663)
T ss_pred HHHHHHhhhCCCCCccccceEEEEecCchHhcccHHHHHHHHhhcCCCcEEEEEeCCCceeccCccccc-chhHHHHHHh
Confidence 988642 2 458999999999999999999999999999 799999999999999988876 6899999999
Q ss_pred cCeeEE-EEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCCCCCC
Q 016909 227 YGVRSI-RVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTT 274 (380)
Q Consensus 227 ~G~~~~-~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R~~gHs~ 274 (380)
|||+++ .+||||+++|.+|+++|... .++|++|+|+|.-.+|-..
T Consensus 210 yGW~vi~~~DG~D~e~I~~Ai~~Ak~~---~dkPtlI~~kTiIG~Gsp~ 255 (663)
T COG0021 210 YGWNVIRVIDGHDLEAIDKAIEEAKAS---TDKPTLIIVKTIIGKGSPN 255 (663)
T ss_pred cCCeEEEecCCCCHHHHHHHHHHHHhc---CCCCeEEEEEeeeecCCCC
Confidence 999999 68999999999999999863 6899999999999888665
No 32
>TIGR00759 aceE pyruvate dehydrogenase E1 component, homodimeric type. WARNING: This family is classified as subfamily rather than equivalog because it includes a counterexample from Pseudomonas putida, MdeB, that is active as an E1 component of an alpha-ketoglutarate dehydrogenase complex rather than a pyruvate dehydrogase complex. The second pyruvate dehydrogenase complex E1 protein from Alcaligenes eutrophus, PdhE, complements an aceE mutant of E. coli but is not part of a pyruvate dehydrogenase complex operon, is more similar to the Pseudomonas putida MdeB than to E. coli AceE, and may have also have a different primary specificity.
Probab=99.93 E-value=5.4e-24 Score=225.58 Aligned_cols=228 Identities=18% Similarity=0.206 Sum_probs=170.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh----cCCcccccccchhHHHHHHHHhcCCC------CcEEEccccchH------
Q 016909 35 EGVAIKMYNDMVTLQTMDTIFYEAQR----QGRISFYLTTSGEEAINIASAAAIKN------DDFVVPQYREPG------ 98 (380)
Q Consensus 35 ~~~l~~~y~~M~~~R~~e~~~~~~~~----~g~i~~~~~~~GqEa~~~~~~~~l~~------~D~v~~~yR~~~------ 98 (380)
+.++.+..+..+|-..++........ .|.++...++. +...+.....|+. .|.|++ .||+
T Consensus 71 d~~~e~~i~~~iR~~ai~MV~~A~~~~~~vgGHigsslS~a--dIl~vLy~~~lr~~~~~~~rD~VlS--KGHasp~lYA 146 (885)
T TIGR00759 71 DLELERRIRSIIRWNAIAMVLRANKKDLGLGGHISTYASAA--TLYEVGFNHFFRGHSEGGGGDLVFF--QGHAAPGIYA 146 (885)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCcCCcHHHH--HHHHHHHHHhcCCCCCCCCCCEEEE--CCcHHHHHHH
Confidence 44455555555554444433221101 23333222221 3344444456663 687665 4553
Q ss_pred HHHHcCCCHHHHHHHhhcCCCCCCCCCCCccccCCCC-CC-cccccccccCccHHHHHHHHHhhh-------cCCCceeE
Q 016909 99 VLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNK-HN-YFTVSSTIATQLPHAVGAAYALKM-------DRKDACAV 169 (380)
Q Consensus 99 ~~l~~G~~~~~~l~e~~g~~~~~~~G~~~~~H~~~~~-~~-~~~~~g~lG~~~p~AvG~A~A~k~-------~~~~~~vv 169 (380)
.+...|+..++-|..|+... .|+++++|+.... ++ +..++|+||+|+++|+|+|++.|+ +..+.+|+
T Consensus 147 ~L~l~G~ls~e~L~~FRq~~----~g~gL~shPhp~~~p~~ve~sTGSLG~Gls~AvG~Ala~Kyl~~rg~~~~~~~rVy 222 (885)
T TIGR00759 147 RAFLEGRLTEEQLDNFRQEV----QGDGLSSYPHPWLMPDFWQFPTVSMGLGPINAIYQARFMKYLENRGLKDTGDQKVW 222 (885)
T ss_pred HHHHcCCCCHHHHHHhcCCC----CCCCCCCCCCcCcCCCCEEeCCCCccHHHHHHHHHHHHHHHHHhhccCCCCCceEE
Confidence 34458977777777776421 1567778776432 43 777899999999999999999996 56788999
Q ss_pred EEeCccccCcchHHHHHHHHHHcCC-CEEEEEEcCCcceeeecccccC-CcCHHHHHhhcCeeEEEE-------------
Q 016909 170 TYFGDGGTSEGDFHAALNFSAVTEA-PVIFICRNNGWAISTPISDQFR-SDGAVVKGRAYGVRSIRV------------- 234 (380)
Q Consensus 170 ~~~GDG~~~eG~~~Eal~~A~~~~L-pvi~vv~NN~~~i~~~~~~~~~-~~~~~~~a~a~G~~~~~V------------- 234 (380)
|++|||+++||.+|||+.+|++++| ++|+||++|..++++++..... ..++.++++++||++++|
T Consensus 223 vllGDGEldEG~swEA~~~Aa~~kLdNLi~IVD~N~~qlDG~v~~~~~i~e~le~~F~a~GW~Vi~V~wg~~wd~lf~~d 302 (885)
T TIGR00759 223 AFLGDGEMDEPESKGAITFAAREKLDNLTFVINCNLQRLDGPVRGNGKIIQELESLFRGAGWNVIKVLWGSEWDALLARD 302 (885)
T ss_pred EEEcchhhccHHHHHHHHHHHHhCCCCEEEEEeCCCCccCCccccccccchhHHHHHHhcCCEEEEEecCccchHhhcCC
Confidence 9999999999999999999999999 8999999999999999887544 568999999999999999
Q ss_pred --------------------------------------------------------eCCCHHHHHHHHHHHHHHhhccCC
Q 016909 235 --------------------------------------------------------DGNDALAIYSAVHAAREMAIGEGR 258 (380)
Q Consensus 235 --------------------------------------------------------dG~D~~av~~a~~~A~~~ar~~~g 258 (380)
+|||+.+|++|++.|.+. .++
T Consensus 303 ~~g~L~~~m~~~~dg~yq~~~~~~Ga~~R~~ffg~~~~l~~lv~~~sD~~i~~l~rgGHD~~~I~~A~~~A~~~---~gr 379 (885)
T TIGR00759 303 TSGVLVKLMNETVDGDYQTYKAKDGAYVREHFFNRTPELKALVADMSDADIWALNRGGHDPRKVYAAYAAAQEH---KGQ 379 (885)
T ss_pred CccHHHHHHHhcccHHHHHHhhcchHHHHHHhccccHHHHHHhhccchhhhhhccCCCCCHHHHHHHHHHHHhC---CCC
Confidence 599999999999988764 468
Q ss_pred cEEEEEEeecCCCCC
Q 016909 259 PILIEALTYRVGHHT 273 (380)
Q Consensus 259 P~lIe~~t~R~~gHs 273 (380)
|++|.++|...+|.+
T Consensus 380 PTvIlA~TvKG~G~~ 394 (885)
T TIGR00759 380 PTVILAKTIKGYGMG 394 (885)
T ss_pred CEEEEEeeeecCCCC
Confidence 999999999999976
No 33
>cd02011 TPP_PK Thiamine pyrophosphate (TPP) family, Phosphoketolase (PK) subfamily, TPP-binding module; PK catalyzes the conversion of D-xylulose 5-phosphate and phosphate to acetyl phosphate, D-glyceraldehyde-3-phosphate and H2O. This enzyme requires divalent magnesium ions and TPP for activity.
Probab=99.93 E-value=2.7e-25 Score=205.06 Aligned_cols=167 Identities=22% Similarity=0.311 Sum_probs=144.6
Q ss_pred chhHHHHHHHHhcCCC-CcEEEccccchHHHHHcCCCHHHHHHHhhcCCCCCCCCCCCccccCCCCCCcccccccccCcc
Q 016909 71 SGEEAINIASAAAIKN-DDFVVPQYREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQL 149 (380)
Q Consensus 71 ~GqEa~~~~~~~~l~~-~D~v~~~yR~~~~~l~~G~~~~~~l~e~~g~~~~~~~G~~~~~H~~~~~~~~~~~~g~lG~~~ 149 (380)
.||++.++.++..|.. .|.+++.||.+.. | ++++|.+|. . .|+ +++|+....+++...+|+||+++
T Consensus 2 ~GHg~~~l~a~l~l~G~~~~~~p~~~~~~~----g--l~~lf~qfs-~-----~gg-~psH~~~~tpGi~~~~G~LG~gL 68 (227)
T cd02011 2 PGHGGPAVLANLYLEGSYSEFYPEISQDEE----G--MRKLFKQFS-F-----PGG-IPSHAAPETPGSIHEGGELGYSL 68 (227)
T ss_pred CChHHHHHHHHHHhcCCCccccccccccHH----H--HHHHHHhcC-C-----CCC-CCCCCcccCCCeeecccchhhHH
Confidence 5899999988888886 5999999997751 2 256777763 1 233 89999888899999999999999
Q ss_pred HHHHHHHHHhhhcCCCceeEEEeCccccCcchH---HHHHHHHHHcCC-CEEEEEEcCCcceeeecccc-cCCcCHHHHH
Q 016909 150 PHAVGAAYALKMDRKDACAVTYFGDGGTSEGDF---HAALNFSAVTEA-PVIFICRNNGWAISTPISDQ-FRSDGAVVKG 224 (380)
Q Consensus 150 p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~---~Eal~~A~~~~L-pvi~vv~NN~~~i~~~~~~~-~~~~~~~~~a 224 (380)
++|+|+|+ ++++.+|+|++|||++++|.+ |++.+++..+++ +|+.|++||+|+|++++... .+.+++.+++
T Consensus 69 s~A~G~a~----d~~d~iv~~vvGDGE~eeG~lA~~W~a~~~~~~~~~~~vLpIld~Ng~~i~~pt~~~~~~~e~l~~~~ 144 (227)
T cd02011 69 SHAYGAVF----DNPDLIVACVVGDGEAETGPLATSWHSNKFLNPATDGAVLPILHLNGYKISNPTILARISHEELEALF 144 (227)
T ss_pred HHHHHhhh----cCCCcEEEEEECcCHHHHHhHHHHHHhhhhhcccccCCeEEEEEcCCCcccCCccccccCchhHHHHH
Confidence 99999974 578899999999999999996 999999999999 79999999999999999865 5578899999
Q ss_pred hhcCeeEEEEeCCCHHHHHHHHHHHHHHhh
Q 016909 225 RAYGVRSIRVDGNDALAIYSAVHAAREMAI 254 (380)
Q Consensus 225 ~a~G~~~~~VdG~D~~av~~a~~~A~~~ar 254 (380)
++|||+++.|||||++++++++++|++++|
T Consensus 145 ~~yG~~~~~VDG~D~~av~~~~a~a~~~~~ 174 (227)
T cd02011 145 RGYGYEPYFVEGDDPETMHQAMAATLDWAI 174 (227)
T ss_pred HhCCCceEEECCCCHHHHHHHHHHHHHHHH
Confidence 999999999999999999999998886543
No 34
>TIGR00204 dxs 1-deoxy-D-xylulose-5-phosphate synthase. DXP synthase is a thiamine diphosphate-dependent enzyme related to transketolase and the pyruvate dehydrogenase E1-beta subunit. By an acyloin condensation of pyruvate with glyceraldehyde 3-phosphate, it produces 1-deoxy-D-xylulose 5-phosphate, a precursor of thiamine diphosphate (TPP), pyridoxal phosphate, and the isoprenoid building block isopentenyl diphosphate (IPP).
Probab=99.93 E-value=1.5e-24 Score=228.68 Aligned_cols=226 Identities=17% Similarity=0.182 Sum_probs=167.2
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccchhHHHHHHHHhcCC-CCcEEEcc--ccchHHHHHcCC
Q 016909 29 SFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRISFYLTTSGEEAINIASAAAIK-NDDFVVPQ--YREPGVLLWRGF 105 (380)
Q Consensus 29 ~~~~~~~~~l~~~y~~M~~~R~~e~~~~~~~~~g~i~~~~~~~GqEa~~~~~~~~l~-~~D~v~~~--yR~~~~~l~~G~ 105 (380)
+.++++.++|.++-.. +|.+.++.. . ...|.++ +++|-=-+.+++-..++ +.|.++.+ |...++++..|+
T Consensus 9 dl~~l~~~~l~~la~~-iR~~~i~~~--~-~~~GH~g---~~ls~vel~~aL~~~~~~~rDr~i~s~GH~~Y~~~~~~G~ 81 (617)
T TIGR00204 9 ELRLLSIDELEKLCDE-LRRYLLESV--S-ASGGHLA---SGLGTVELTVALHYVFNTPKDQFIWDVGHQAYPHKLLTGR 81 (617)
T ss_pred HHhhCCHHHHHHHHHH-HHHHHHHHH--h-ccCCCcC---cchhHHHHHHHHHhhCCCCCCcEEEecchHHHHHHHHhCc
Confidence 4567787776655433 344444432 2 2344443 33333223344444566 56877653 777778888997
Q ss_pred CHHHHHHHhhcCCCCCCCCCCCccccCCCCCCcc-cccccccCccHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHH
Q 016909 106 SMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYF-TVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHA 184 (380)
Q Consensus 106 ~~~~~l~e~~g~~~~~~~G~~~~~H~~~~~~~~~-~~~g~lG~~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~E 184 (380)
.+-|..++.. |+ +++|+....+++. ..+|++|+++++|+|+|+|.|+++.+.+|+|++|||++++|.+||
T Consensus 82 --~~~l~~~r~~------g~-l~g~p~~~e~~~d~~~~G~~g~~ls~a~G~A~a~~~~~~~~~v~~~~GDG~~~eG~~~E 152 (617)
T TIGR00204 82 --REKFSTLRQK------KG-LHGFPKRSESEYDVFSAGHSSTSISAGLGIAVAAEKKGADRKTVCVIGDGAITAGMAFE 152 (617)
T ss_pred --HHHhcchhhc------CC-cCCCCcCCCCCCCccCCCchHhHHHHHHHHHHHHHhhCCCCEEEEEECCcccccccHHH
Confidence 3445666542 44 8888876555555 479999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCEEEEEEcCCcceeeecccccC------------------------Cc---C-HHHH-------------
Q 016909 185 ALNFSAVTEAPVIFICRNNGWAISTPISDQFR------------------------SD---G-AVVK------------- 223 (380)
Q Consensus 185 al~~A~~~~Lpvi~vv~NN~~~i~~~~~~~~~------------------------~~---~-~~~~------------- 223 (380)
|+|+|+.++||+|+||+||++++++++..... .+ + +.++
T Consensus 153 a~~~a~~~~l~~i~ii~~N~~~i~~~~~~~~~~l~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~ 232 (617)
T TIGR00204 153 ALNHAGDLKTDMIVILNDNEMSISENVGALSNHLAQLRSGSLYQSLRDGLKKIFSKLPPIKNYLAKRTEESMKGLVVPGT 232 (617)
T ss_pred HHHHHHhcCCCEEEEEECCCcccCCCchHHHHHHHHhhccchHHHHHHHHHHHHhcCcchhHHHHHHHHHhhhhccCccc
Confidence 99999999999999999999999988752210 01 1 3344
Q ss_pred -HhhcCeeEE-EEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCCCCCC
Q 016909 224 -GRAYGVRSI-RVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTT 274 (380)
Q Consensus 224 -a~a~G~~~~-~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R~~gHs~ 274 (380)
+++|||.++ .|||||+.++.++++.+.. .++|++|.++|.+..|-+.
T Consensus 233 ~f~~~G~~~~~~vDGhd~~~l~~al~~ak~----~~~P~~i~~~T~KGkG~~~ 281 (617)
T TIGR00204 233 FFEELGFNYIGPVDGHDLLELIETLKNAKK----LKGPVFLHIQTKKGKGYKP 281 (617)
T ss_pred hHHHcCCcEEcccCCCCHHHHHHHHHHHhc----CCCCEEEEEEecCCCCCch
Confidence 899999999 7999999999999986653 5789999999999988543
No 35
>TIGR03186 AKGDH_not_PDH alpha-ketoglutarate dehydrogenase. Several bacterial species have a paralog to homodimeric form of the pyruvate dehydrogenase E1 component (see model TIGR00759), often encoded next to L-methionine gamma-lyase gene (mdeA). The member from a strain of Pseudomonas putida was shown to act on alpha-ketobutyrate, which is produced by MdeA.This model serves as an exception model to TIGR00759, as other proteins hitting TIGR00759 should be identified as the pyruvate dehydrogenase E1 component.
Probab=99.92 E-value=2.9e-23 Score=222.30 Aligned_cols=231 Identities=18% Similarity=0.191 Sum_probs=168.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh----cCCcccccccchhHHHHHHHHhcCCC------CcEEEcc-ccchH---HH
Q 016909 35 EGVAIKMYNDMVTLQTMDTIFYEAQR----QGRISFYLTTSGEEAINIASAAAIKN------DDFVVPQ-YREPG---VL 100 (380)
Q Consensus 35 ~~~l~~~y~~M~~~R~~e~~~~~~~~----~g~i~~~~~~~GqEa~~~~~~~~l~~------~D~v~~~-yR~~~---~~ 100 (380)
+.++.+-....+|...++........ .|.++...++ -+...+.....|+. .|+|++. |-..+ .+
T Consensus 71 d~~~~~~~a~~iR~~a~~mv~~A~~~~~~~gGH~gs~lS~--a~i~~vLy~~~lr~~~~~~~rD~VlskGHasp~lYA~l 148 (889)
T TIGR03186 71 DLQLEERLAAILRWNALAMVVRANRAYGELGGHIASYASA--ADLFEVGFNHFFRAAGDASGGDLVYFQPHSAPGVYARA 148 (889)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCcCcHHH--HHHHHHHHHHhCCCCCCCCCCCEEEECCchHHHHHHHH
Confidence 44555555556655555444322211 2343332222 24444445556663 6876663 44443 33
Q ss_pred HHcCCCHHHHHHHhhcCCCCCCCCCCCccccCCC-CC-CcccccccccCccHHHHHHHHHhhhc-------CCCceeEEE
Q 016909 101 LWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSN-KH-NYFTVSSTIATQLPHAVGAAYALKMD-------RKDACAVTY 171 (380)
Q Consensus 101 l~~G~~~~~~l~e~~g~~~~~~~G~~~~~H~~~~-~~-~~~~~~g~lG~~~p~AvG~A~A~k~~-------~~~~~vv~~ 171 (380)
...|+..++-|.+|+... .|+++++|+... .+ ++..++|+||+|+++|+|+|++.|+. ..+.+|+|+
T Consensus 149 ~l~G~l~~e~L~~fRq~~----~~~gl~~~phP~~~p~~ve~sTGSLGqGl~~AvG~Ala~kyl~~r~~~~~~~~rVy~l 224 (889)
T TIGR03186 149 FLEGFLSDAQLAHYRQEI----AGPGLCSYPHPWLMPDFWQFPTGSMGIGPINAIYQARFMRYLQNRGLARTEGRKVWGF 224 (889)
T ss_pred HHcCCCCHHHHHHhcCCC----CCCCCCCCCCcccCCCCeEcCCCCchHHHHHHHHHHHHHHHHhhccccCCCCceEEEE
Confidence 457976666677776531 144555544322 24 47778999999999999999998843 236899999
Q ss_pred eCccccCcchHHHHHHHHHHcCC-CEEEEEEcCCcceeeecccccC-CcCHHHHHhhcCeeEEEE---------------
Q 016909 172 FGDGGTSEGDFHAALNFSAVTEA-PVIFICRNNGWAISTPISDQFR-SDGAVVKGRAYGVRSIRV--------------- 234 (380)
Q Consensus 172 ~GDG~~~eG~~~Eal~~A~~~~L-pvi~vv~NN~~~i~~~~~~~~~-~~~~~~~a~a~G~~~~~V--------------- 234 (380)
+|||+++||.+|||+.+|++++| ++|+||++|..++++++..... ..++.+++++|||++++|
T Consensus 225 lGDGEl~EG~~wEA~~~Aa~~kLdNLi~IvD~N~~qlDG~t~~~~~~~e~l~~kf~a~GW~vi~v~wG~~wd~l~~~d~~ 304 (889)
T TIGR03186 225 FGDGEMDEPESIGALSLAARERLDNLVFVINCNLQRLDGPVRGNGRIIDELESQFAGAGWNVIKVLWGSDWDALFARDAT 304 (889)
T ss_pred EcchhhccHHHHHHHHHHHHhCCCCEEEEEeCCCCccCCccccccccchHHHHHHHhCCCEEEEEeecCchHHhhccccc
Confidence 99999999999999999999999 8999999999999999887433 578999999999999999
Q ss_pred ------------------------------------------------------eCCCHHHHHHHHHHHHHHhhccCCcE
Q 016909 235 ------------------------------------------------------DGNDALAIYSAVHAAREMAIGEGRPI 260 (380)
Q Consensus 235 ------------------------------------------------------dG~D~~av~~a~~~A~~~ar~~~gP~ 260 (380)
+|||+.+|++|+++|.+. .++|+
T Consensus 305 ~~L~~~~~~~~dg~yq~~~~~~ga~~R~~ff~~~~~~~~lv~~~sD~~i~~l~rgGHD~~~i~~A~~~A~~~---~~~PT 381 (889)
T TIGR03186 305 GALARAFAHTVDGQFQTFSANDGAYNRARFFGQDPALAALVAHLSDEDIDRLRRGGHDARKLYAAYDRAVRH---EGRPT 381 (889)
T ss_pred hHHHHHHHhcccHHHHHHhhcchHHHHHHhcCccHHHHHHhhcccHHhhhhhcCCCCCHHHHHHHHHHHHhC---CCCCE
Confidence 599999999999999864 46999
Q ss_pred EEEEEeecCCCCCC
Q 016909 261 LIEALTYRVGHHTT 274 (380)
Q Consensus 261 lIe~~t~R~~gHs~ 274 (380)
+|.++|...+|-+.
T Consensus 382 vIla~TvkG~G~~~ 395 (889)
T TIGR03186 382 VILAKTMKGFGMGA 395 (889)
T ss_pred EEEEEeeecCCCCc
Confidence 99999999988644
No 36
>PRK12571 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=99.91 E-value=2.3e-23 Score=220.41 Aligned_cols=231 Identities=18% Similarity=0.210 Sum_probs=164.7
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccchhHHHHHHHHhcCC-CCcEEEc--cccchHHHHHc
Q 016909 27 DSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRISFYLTTSGEEAINIASAAAIK-NDDFVVP--QYREPGVLLWR 103 (380)
Q Consensus 27 ~~~~~~~~~~~l~~~y~~M~~~R~~e~~~~~~~~~g~i~~~~~~~GqEa~~~~~~~~l~-~~D~v~~--~yR~~~~~l~~ 103 (380)
+.+.++|+.++|.++-.. +|.+.++.. ... .|.++. ++|-=-+.+++-..++ +.|.++. .|-..++++..
T Consensus 15 p~dl~~l~~~~l~~~a~~-iR~~ii~~~--~~~-~GH~g~---~ls~vel~~aL~~~~~~prDr~i~s~GH~~Y~~~~l~ 87 (641)
T PRK12571 15 PADLRALSDAELEQLADE-LRAEVISAV--SET-GGHLGS---SLGVVELTVALHAVFNTPKDKLVWDVGHQCYPHKILT 87 (641)
T ss_pred HHHHHhCCHHHHHHHHHH-HHHHHHHHH--HHh-CCCcCC---CchHHHHHHHHHHhcCCCCCcEEEECchHHHHHHHHh
Confidence 345677887777655333 344444433 222 355432 3332223334444444 5687765 36666777778
Q ss_pred CCCHHHHHHHhhcCCCCCCCCCCCccccCCCC-CCcccccccccCccHHHHHHHHHhhhcCCCceeEEEeCccccCcchH
Q 016909 104 GFSMQEFANQCFGNKADYGKGRQMPIHYGSNK-HNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDF 182 (380)
Q Consensus 104 G~~~~~~l~e~~g~~~~~~~G~~~~~H~~~~~-~~~~~~~g~lG~~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~ 182 (380)
|. .+-|..++.. |+ +++|+...+ ++.....|+-++++++|+|+|+|.|+.+++++|+|++|||++++|.+
T Consensus 88 g~--~~~l~~~r~~------~~-l~g~p~~~e~~~~~~~~g~~~gslg~a~G~A~a~~~~~~~~~v~~v~GDG~~~eG~~ 158 (641)
T PRK12571 88 GR--RDRFRTLRQK------GG-LSGFTKRSESEYDPFGAAHSSTSISAALGFAKARALGQPDGDVVAVIGDGSLTAGMA 158 (641)
T ss_pred CC--HHHHhhhhhC------CC-cCCCCCCCcCCCCCcccCCCcChHHHHHHHHHHHHHhCCCCeEEEEEeCchhhcchH
Confidence 86 4556666642 43 667776533 22223344446678999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCEEEEEEcCCcceeeecc-------cccCCcCH-----------------------------------
Q 016909 183 HAALNFSAVTEAPVIFICRNNGWAISTPIS-------DQFRSDGA----------------------------------- 220 (380)
Q Consensus 183 ~Eal~~A~~~~Lpvi~vv~NN~~~i~~~~~-------~~~~~~~~----------------------------------- 220 (380)
||++++|+.+++|+++|++||++++++++. +......+
T Consensus 159 ~Eal~~a~~~~~~li~I~dnN~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (641)
T PRK12571 159 YEALNNAGAADRRLIVILNDNEMSIAPPVGALAAYLSTLRSSDPFARLRAIAKGVEERLPGPLRDGARRARELVTGMIGG 238 (641)
T ss_pred HHHHHHHHHhCCCEEEEEECCCeeecCCccHHHHHHHHHhcCcchHHHHHHHHHHHhhcchhHHHHHHHHHHhhhhccch
Confidence 999999999999999999999999998874 21112111
Q ss_pred HHHHhhcCeeEE-EEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCCCCCCCC
Q 016909 221 VVKGRAYGVRSI-RVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSD 276 (380)
Q Consensus 221 ~~~a~a~G~~~~-~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R~~gHs~~D 276 (380)
.+++++|||.++ .|||||+.++.++++++.+. .++|++|.++|.+..|.+...
T Consensus 239 ~~~f~a~G~~~~~~vdGhd~~~l~~al~~ak~~---~~~P~~I~~~T~kGkG~~~~e 292 (641)
T PRK12571 239 GTLFEELGFTYVGPIDGHDMEALLSVLRAARAR---ADGPVLVHVVTEKGRGYAPAE 292 (641)
T ss_pred hhHHHHcCCEEECccCCCCHHHHHHHHHHHHhC---CCCCEEEEEEecCccCcchhh
Confidence 479999999999 79999999999999887642 378999999999999976443
No 37
>PLN02234 1-deoxy-D-xylulose-5-phosphate synthase
Probab=99.91 E-value=1.8e-22 Score=211.49 Aligned_cols=198 Identities=14% Similarity=0.127 Sum_probs=152.0
Q ss_pred ccchhHHHHHHHHhcCC-CCcEEEcc--ccchHHHHHcCCCHHHHHHHhhcCCCCCCCCCCCccccCCC-CCCccccccc
Q 016909 69 TTSGEEAINIASAAAIK-NDDFVVPQ--YREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSN-KHNYFTVSST 144 (380)
Q Consensus 69 ~~~GqEa~~~~~~~~l~-~~D~v~~~--yR~~~~~l~~G~~~~~~l~e~~g~~~~~~~G~~~~~H~~~~-~~~~~~~~g~ 144 (380)
++.|-=-+.+++-..|+ |.|.++.. |-..++.+..|.. +-|..++.. |+ +++|+... .++....+|+
T Consensus 108 ssLs~vEl~~aL~~vf~~p~DriI~s~GHqaya~~~ltgr~--~~l~t~r~~------gg-l~G~p~~~es~~d~~~tGs 178 (641)
T PLN02234 108 SNLGVVELTVALHYIFNTPHDKILWDVGHQSYPHKILTGRR--GKMKTIRQT------NG-LSGYTKRRESEHDSFGTGH 178 (641)
T ss_pred ccchHHHHHHHHHHhcCCCCCeEEEecchhHHHHHHHHhhh--hhhcccccC------CC-cCCCCCCCCCCCcEECCCc
Confidence 34443333344444554 67887764 6666777777752 234455432 33 77887654 4678888999
Q ss_pred ccCccHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcc------eeeecccccCC-
Q 016909 145 IATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWA------ISTPISDQFRS- 217 (380)
Q Consensus 145 lG~~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~------i~~~~~~~~~~- 217 (380)
+|+++++|+|+|+|.++++.+..|||++|||++++|++|||+|.|+..+-|+|+|+++|+.+ .++++......
T Consensus 179 lg~glS~a~GmA~a~~l~g~~~~v~~viGDGel~eG~~wEAl~~a~~~~~nlivIlddN~~~~~~~~q~~g~~~~v~~l~ 258 (641)
T PLN02234 179 SSTTLSAGLGMAVGRDLKGMNNSVVSVIGDGAMTAGQAYEAMNNAGYLHSNMIVILNDNKQVSLPTANLDGPTQPVGALS 258 (641)
T ss_pred hHHHHHHHHHHHHHHHhCCCCCeEEEEEccchhhhHHHHHHHHHHhhhCCCEEEEEECCCCCcccccccCCCCCCcccHH
Confidence 99999999999999999999999999999999999999999999996666999999999983 44444322111
Q ss_pred --------------cCHHHHHhhcCeeEE-EEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCCCCCCCCC
Q 016909 218 --------------DGAVVKGRAYGVRSI-RVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDD 277 (380)
Q Consensus 218 --------------~~~~~~a~a~G~~~~-~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R~~gHs~~Dd 277 (380)
++..+++++|||.++ .|||||++++.++++++... ..++|++|.++|.+..|.+....
T Consensus 259 ~~l~~l~~~~~~~~~~~~~~fe~fG~~~~g~vDGHd~~~l~~al~~~k~~--~~~~P~vI~~~T~KGkGv~~~E~ 331 (641)
T PLN02234 259 CALSRLQSNCGMIRETSSTLFEELGFHYVGPVDGHNIDDLVSILETLKST--KTIGPVLIHVVTEKGRGYPYAER 331 (641)
T ss_pred HHHHHhhcccccccCCHHHHHHHcCCEEEeeECCCCHHHHHHHHHHHHhc--CCCCCEEEEEEEecCCCcchhhc
Confidence 356789999999999 99999999999999887542 23589999999999999887654
No 38
>PRK13012 2-oxoacid dehydrogenase subunit E1; Provisional
Probab=99.91 E-value=1.9e-22 Score=216.90 Aligned_cols=230 Identities=19% Similarity=0.203 Sum_probs=170.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc----CCcccccccchhHHHHHHHHhcCC------CCcEEEcc-ccchH---HH
Q 016909 35 EGVAIKMYNDMVTLQTMDTIFYEAQRQ----GRISFYLTTSGEEAINIASAAAIK------NDDFVVPQ-YREPG---VL 100 (380)
Q Consensus 35 ~~~l~~~y~~M~~~R~~e~~~~~~~~~----g~i~~~~~~~GqEa~~~~~~~~l~------~~D~v~~~-yR~~~---~~ 100 (380)
+.++.+-.+..+|-..++......... |.++.+.++. +...++....|+ ..|.|++. |-..+ .+
T Consensus 85 d~~~e~~i~~~iR~~a~~mv~~A~~~~~~~GGH~~s~~S~a--~i~~vl~~~~~r~~~~~~~~D~V~skGHasp~lYA~~ 162 (896)
T PRK13012 85 DLALEERLAAIIRWNALAMVVRANRAYGELGGHIASYASAA--DLFEVGFNHFFRGRDDAGGGDLVYFQPHSAPGIYARA 162 (896)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCcccHHHH--HHHHHHHHhhcCCCCCCCCCCEEEECcchHHHHHHHH
Confidence 444555455555555554433222112 3333322221 444445555666 56876652 33332 34
Q ss_pred HHcCCCHHHHHHHhhcCCCCCCCCCCCccccCCCC-C-CcccccccccCccHHHHHHHHHhhh-------cCCCceeEEE
Q 016909 101 LWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNK-H-NYFTVSSTIATQLPHAVGAAYALKM-------DRKDACAVTY 171 (380)
Q Consensus 101 l~~G~~~~~~l~e~~g~~~~~~~G~~~~~H~~~~~-~-~~~~~~g~lG~~~p~AvG~A~A~k~-------~~~~~~vv~~ 171 (380)
...|...++-|..|+... .|.++++|+.... + ++..++|+||.|+++|+|.|++.|+ +..+++|+|+
T Consensus 163 ~l~G~l~~e~L~~fR~~~----~~~gl~~~P~p~~~p~~~e~~TGSlG~G~~~ai~~A~~~ryl~~~g~~~~~~~~v~~~ 238 (896)
T PRK13012 163 FLEGRLSEEQLDHFRQEI----GGPGLSSYPHPWLMPDFWQFPTGSMGIGPINAIYQARFMRYLQHRGLKDTSGRKVWGF 238 (896)
T ss_pred HHcCCCCHHHHHHhcCCC----CCCCCCCCCCcCCCCCCEecCCCCchHHHHHHHHHHHhcccccccccccCCCCeEEEE
Confidence 457876666777776431 1566788876543 3 3677899999999999999999993 4567899999
Q ss_pred eCccccCcchHHHHHHHHHHcCC-CEEEEEEcCCcceeeecccccC-CcCHHHHHhhcCeeEEEE---------------
Q 016909 172 FGDGGTSEGDFHAALNFSAVTEA-PVIFICRNNGWAISTPISDQFR-SDGAVVKGRAYGVRSIRV--------------- 234 (380)
Q Consensus 172 ~GDG~~~eG~~~Eal~~A~~~~L-pvi~vv~NN~~~i~~~~~~~~~-~~~~~~~a~a~G~~~~~V--------------- 234 (380)
+|||+++||.+|||+.+|++++| ++||||++|..++++++..... ..++.++++++||.+++|
T Consensus 239 lGDGEl~Eg~~~eA~~~A~~~~LdNLi~ivD~N~~~lDG~v~~~~~~~~~l~~~f~a~GW~Vi~v~wg~~wd~l~~~d~~ 318 (896)
T PRK13012 239 FGDGEMDEPESIAALSLAAREGLDNLVFVINCNLQRLDGPVRGNGRIIQELEALFRGAGWNVIKVLWGSDWDALFARDTT 318 (896)
T ss_pred EchhhhccHHHHHHHHHHHHhCCCcEEEEEECCCccccCccccccccchHHHHHHHhCCCEEEEEecccchHHHhcCCCc
Confidence 99999999999999999999999 8999999999999999887544 468999999999999999
Q ss_pred -----------e-------------------------------------------CCCHHHHHHHHHHHHHHhhccCCcE
Q 016909 235 -----------D-------------------------------------------GNDALAIYSAVHAAREMAIGEGRPI 260 (380)
Q Consensus 235 -----------d-------------------------------------------G~D~~av~~a~~~A~~~ar~~~gP~ 260 (380)
| |||+.+|++|++.|.+. .++|+
T Consensus 319 ~~l~~~~~~~~Dg~yq~~~~~~g~~~r~~ff~~~~~~~~lv~~~~d~~i~~l~rgGHD~~~i~~A~~~a~~~---~~~Pt 395 (896)
T PRK13012 319 GALVRRFAETVDGQFQTFKANDGAYNREHFFGQDPELAALVAHLSDEDIDRLKRGGHDPRKVYAAYAAAVRH---KGQPT 395 (896)
T ss_pred cHHHHHHHhCCcHHHHHHhhcchHHHHHHhccccHHHHHHhhcccHHhhhhhcCCCCCHHHHHHHHHHHHhC---CCCCE
Confidence 8 99999999999988764 46899
Q ss_pred EEEEEeecCCCCC
Q 016909 261 LIEALTYRVGHHT 273 (380)
Q Consensus 261 lIe~~t~R~~gHs 273 (380)
+|.++|...+|-+
T Consensus 396 vIla~TvkG~G~~ 408 (896)
T PRK13012 396 VILAKTKKGYGMG 408 (896)
T ss_pred EEEEEeeecCCCC
Confidence 9999999999865
No 39
>KOG0523 consensus Transketolase [Carbohydrate transport and metabolism]
Probab=99.90 E-value=1.2e-22 Score=205.08 Aligned_cols=218 Identities=22% Similarity=0.227 Sum_probs=172.7
Q ss_pred HHHHHHHHHHHHHHHHhcCCcccccccchhHHHHHHHHhcCC---------CCcEEEcc--ccc---hHHHHHcCCCHHH
Q 016909 44 DMVTLQTMDTIFYEAQRQGRISFYLTTSGEEAINIASAAAIK---------NDDFVVPQ--YRE---PGVLLWRGFSMQE 109 (380)
Q Consensus 44 ~M~~~R~~e~~~~~~~~~g~i~~~~~~~GqEa~~~~~~~~l~---------~~D~v~~~--yR~---~~~~l~~G~~~~~ 109 (380)
.|-.+|..+-.+...-..|..++..+.. +...+-.-..|+ ..|.++.+ |-+ .++....|....+
T Consensus 13 ~~n~lri~si~~~~~a~sghp~s~~s~A--~~~~vlf~~~mr~~~~~p~~~n~Drfvls~GHa~~llYa~~~l~G~~~~e 90 (632)
T KOG0523|consen 13 AVNNLRILSIDATSAAKSGHPGSPLSLA--PIMHVLFFEVMRYNPADPYWFNRDRFVLSNGHACPLLYAHWHLAGYDREE 90 (632)
T ss_pred HhhhhhhhhHHHHHhhhcCCCCCccccc--hhhhhhhhhheecccCCcCCCCCceEEEeccccchHHHHHHHHhccCcHH
Confidence 4566677777776666677654432211 222222222232 24766665 333 2445567877777
Q ss_pred HHHHhhcCCCCCCCCCCCccccCCCCCCcccccccccCccHHHHHHHHHhhhcCC-CceeEEEeCccccCcchHHHHHHH
Q 016909 110 FANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRK-DACAVTYFGDGGTSEGDFHAALNF 188 (380)
Q Consensus 110 ~l~e~~g~~~~~~~G~~~~~H~~~~~~~~~~~~g~lG~~~p~AvG~A~A~k~~~~-~~~vv~~~GDG~~~eG~~~Eal~~ 188 (380)
-|.+|+.. |+..++|+..+.+++...+|++|+|++.|+|+|++.|+.+. +..|+|++|||+++||..|||+++
T Consensus 91 dl~~~Rq~------~s~t~ghp~~~~~~v~v~TG~lgQgis~a~GmA~~~k~~~k~~~rv~~vlGDG~~~eG~~~EA~s~ 164 (632)
T KOG0523|consen 91 DLKNFRQI------GSDTPGHPEPELPGVEVATGPLGQGISNAVGMAYAGKHLGKASNRVYCVLGDGCLTEGSVWEAMSL 164 (632)
T ss_pred HHHHHHhh------CCCCCCCCcccCCCceeccCCccchHHHHHHHHHHHHhhccccceEEEEEcCchhccchHHHHHhh
Confidence 77778764 77788999877778888899999999999999999999887 899999999999999999999999
Q ss_pred HHHcCC-CEEEEEEcCCcceeeecccccCCcCHHH-HHhhcCeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEe
Q 016909 189 SAVTEA-PVIFICRNNGWAISTPISDQFRSDGAVV-KGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALT 266 (380)
Q Consensus 189 A~~~~L-pvi~vv~NN~~~i~~~~~~~~~~~~~~~-~a~a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t 266 (380)
|+.|+| ++|+|.+||+.+++++++..+. .++.+ ++++|||++..|||+|++++.+++.+|.. ..++|++|-++|
T Consensus 165 Ag~l~ldnLVai~D~n~is~~g~t~~~~~-~dV~~~r~ea~g~~~~~V~~~d~d~i~ka~~~a~~---~k~kpt~i~~~t 240 (632)
T KOG0523|consen 165 AGHLKLDNLVAIYDNNKISIDGATSLGFD-EDVYQLRFEAFGWNVIIVDGGDVDEIRKAIGKAKS---VKGKPTAIKATT 240 (632)
T ss_pred hhhcccCCEEEEEccccccCCCCCccccc-ccHHHHHHHHhCceEEEEcCcCHHHHHHHHhhhhh---ccCCceeeeeee
Confidence 999999 8999999999999999887764 56776 99999999999999999999999999874 368999999999
Q ss_pred ecCCCCC
Q 016909 267 YRVGHHT 273 (380)
Q Consensus 267 ~R~~gHs 273 (380)
+..+|-.
T Consensus 241 ~~g~G~~ 247 (632)
T KOG0523|consen 241 FIGRGSP 247 (632)
T ss_pred eeecCcc
Confidence 9988743
No 40
>PRK09405 aceE pyruvate dehydrogenase subunit E1; Reviewed
Probab=99.90 E-value=7e-22 Score=211.78 Aligned_cols=228 Identities=18% Similarity=0.193 Sum_probs=172.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhc----CCcccccccchhHHHHHHHHhcCCC------CcEEEccccchH-----
Q 016909 34 SEGVAIKMYNDMVTLQTMDTIFYEAQRQ----GRISFYLTTSGEEAINIASAAAIKN------DDFVVPQYREPG----- 98 (380)
Q Consensus 34 ~~~~l~~~y~~M~~~R~~e~~~~~~~~~----g~i~~~~~~~GqEa~~~~~~~~l~~------~D~v~~~yR~~~----- 98 (380)
.+.++.+.....+|...++......... |.++.+.++ -+...++....|+. +|+|++ .+|+
T Consensus 76 g~~~~e~~i~~~iR~~a~~mv~~An~~~~~~GGH~~s~~S~--a~i~~vl~~~~~r~~~~~~~~D~V~s--kGHasp~lY 151 (891)
T PRK09405 76 GDLELERRIRSYIRWNAAAMVLRANKKDLGLGGHISSFASS--ATLYEVGFNHFFRAPNEPHGGDLVFF--QGHASPGIY 151 (891)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCcccChHHH--HHHHHHHHHhhCCCCCCCCCCCEEEE--CchHHHHHH
Confidence 4556666667777766665554332211 333222221 23344455556764 687774 4553
Q ss_pred -HHHHcCCCHHHHHHHhhcCCCCCCCCCCCccccCCCC-CC-cccccccccCccHHHHHHHHHhhh-------cCCCcee
Q 016909 99 -VLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNK-HN-YFTVSSTIATQLPHAVGAAYALKM-------DRKDACA 168 (380)
Q Consensus 99 -~~l~~G~~~~~~l~e~~g~~~~~~~G~~~~~H~~~~~-~~-~~~~~g~lG~~~p~AvG~A~A~k~-------~~~~~~v 168 (380)
.+...|...++-|..|+.. +.|+++++|+.... ++ ....++++|.|+++|+|.|++.|+ ++.+++|
T Consensus 152 A~~~l~G~l~~e~L~~fR~~----~~g~gl~syPhp~~~p~~~~~~tgS~G~G~~~a~~~A~~~kyl~~~~~~~~~~~rv 227 (891)
T PRK09405 152 ARAFLEGRLTEEQLDNFRQE----VDGKGLSSYPHPWLMPDFWQFPTVSMGLGPIMAIYQARFLKYLENRGLKDTSDQKV 227 (891)
T ss_pred HHHHHcCCCCHHHHHHhcCC----CCCCCCCCCCCcCCCCCCeecCccccchhHHHHHHHHHhCccccccccccCCCceE
Confidence 3445787667777777653 24677888876533 33 566789999999999999999993 5567899
Q ss_pred EEEeCccccCcchHHHHHHHHHHcCC-CEEEEEEcCCcceeeecccccC-CcCHHHHHhhcCeeEEEE------------
Q 016909 169 VTYFGDGGTSEGDFHAALNFSAVTEA-PVIFICRNNGWAISTPISDQFR-SDGAVVKGRAYGVRSIRV------------ 234 (380)
Q Consensus 169 v~~~GDG~~~eG~~~Eal~~A~~~~L-pvi~vv~NN~~~i~~~~~~~~~-~~~~~~~a~a~G~~~~~V------------ 234 (380)
+|++|||+++||.+|||+.+|++++| ++||||++|..++++++..... ..++.++++++||.++.|
T Consensus 228 ~~~~GDGEldEg~~~EA~~~A~~~~LdNLi~ivD~N~q~lDG~v~~~~~~~~~l~~~f~a~GW~Vi~v~wG~~wd~l~~~ 307 (891)
T PRK09405 228 WAFLGDGEMDEPESLGAISLAAREKLDNLIFVINCNLQRLDGPVRGNGKIIQELEGIFRGAGWNVIKVIWGSRWDPLLAK 307 (891)
T ss_pred EEEEcchhhccHHHHHHHHHHHHhCCCCEEEEEECCCcccCCccccccccchhHHHHHhhCCCEEEEEeccccchhhhcc
Confidence 99999999999999999999999999 8999999999999999886433 578999999999999999
Q ss_pred --------------e-------------------------------------------CCCHHHHHHHHHHHHHHhhccC
Q 016909 235 --------------D-------------------------------------------GNDALAIYSAVHAAREMAIGEG 257 (380)
Q Consensus 235 --------------d-------------------------------------------G~D~~av~~a~~~A~~~ar~~~ 257 (380)
| |||+.+|++|++.|.+. .+
T Consensus 308 d~~g~L~~~~~~~~Dg~yq~~~~~~ga~~R~~ffg~~~~~~~lv~~~sD~~i~~l~~gGHD~~~i~~A~~~A~~~---~~ 384 (891)
T PRK09405 308 DTSGKLVQLMNETVDGDYQTYKAKDGAYVREHFFGKYPETKALVADMSDDDIWALNRGGHDPRKVYAAYKAAVEH---KG 384 (891)
T ss_pred CCccHHHHHHHhCCcHHHHHHHhcccHHHHHHhcCCCHHHHHHHhhCCHHHHHHhccCCCCHHHHHHHHHHHHhC---CC
Confidence 4 99999999999988864 47
Q ss_pred CcEEEEEEeecCCCC
Q 016909 258 RPILIEALTYRVGHH 272 (380)
Q Consensus 258 gP~lIe~~t~R~~gH 272 (380)
+|++|.++|...+|.
T Consensus 385 ~PtvIia~TvkG~G~ 399 (891)
T PRK09405 385 QPTVILAKTIKGYGM 399 (891)
T ss_pred CCEEEEEeceecCCC
Confidence 899999999999997
No 41
>PLN02582 1-deoxy-D-xylulose-5-phosphate synthase
Probab=99.88 E-value=1.1e-21 Score=207.17 Aligned_cols=229 Identities=14% Similarity=0.157 Sum_probs=161.7
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccchhHHHHHHHHhcCC-CCcEEEcc--ccchHHHHHcCC
Q 016909 29 SFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRISFYLTTSGEEAINIASAAAIK-NDDFVVPQ--YREPGVLLWRGF 105 (380)
Q Consensus 29 ~~~~~~~~~l~~~y~~M~~~R~~e~~~~~~~~~g~i~~~~~~~GqEa~~~~~~~~l~-~~D~v~~~--yR~~~~~l~~G~ 105 (380)
+...++.++|.++-.. +|-+.++. ... ..|.++ +++|-=-+.+++-..|+ +.|.++.. |-..++.+..|.
T Consensus 42 dlk~l~~~~l~~la~~-iR~~ii~~--~~~-~~GH~g---~~Ls~vel~~aL~~~~~~p~Dr~i~s~GH~ay~~~~l~gr 114 (677)
T PLN02582 42 HMKNLSVKELKQLADE-LRSDVIFN--VSK-TGGHLG---SSLGVVELTVALHYVFNAPQDKILWDVGHQSYPHKILTGR 114 (677)
T ss_pred HHhhCCHHHHHHHHHH-HHHHHHHH--HHh-cCCCcC---ccccHHHHHHHHHHhhCCCCCeEEEECcchHHHHHHHHcc
Confidence 4566777877655433 23333333 221 134443 33443323334444454 67988864 666778888886
Q ss_pred CHHHHHHHhhcCCCCCCCCCCCccccCCC-CCCcccccccccCccHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHH
Q 016909 106 SMQEFANQCFGNKADYGKGRQMPIHYGSN-KHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHA 184 (380)
Q Consensus 106 ~~~~~l~e~~g~~~~~~~G~~~~~H~~~~-~~~~~~~~g~lG~~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~E 184 (380)
.+-|..++. .|+ +++|+... .++....+|++|+++++|+|+|+|.|+++.+..|+|++|||++++|.+||
T Consensus 115 --~~~l~~~r~------~g~-l~g~p~~~e~~~~~~~~G~~g~~ls~a~G~A~a~~~~~~~~~v~~viGDG~~~~G~~~E 185 (677)
T PLN02582 115 --RDKMHTMRQ------TNG-LSGFTKRAESEYDCFGTGHSSTTISAGLGMAVGRDLKGKKNNVVAVIGDGAMTAGQAYE 185 (677)
T ss_pred --HHHhccccc------CCC-cCCCCCCCCCCCceeccchhhhhHHHHHHHHHHHHhcCCCCEEEEEecccccchhhHHH
Confidence 233555543 244 88888654 36777889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCEEEEEEcCCc-ce--------eeecccc-------cCC---------------------cCHH------
Q 016909 185 ALNFSAVTEAPVIFICRNNGW-AI--------STPISDQ-------FRS---------------------DGAV------ 221 (380)
Q Consensus 185 al~~A~~~~Lpvi~vv~NN~~-~i--------~~~~~~~-------~~~---------------------~~~~------ 221 (380)
|+|.|+.+++|+|+||+||+. ++ +...... ... ..+.
T Consensus 186 aln~a~~~~~~li~iv~~N~~~s~~~~~~~s~~~~vg~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (677)
T PLN02582 186 AMNNAGYLDSDMIVILNDNKQVSLPTATLDGPAPPVGALSSALSRLQSSRPLRELREVAKGVTKQIGGPMHELAAKVDEY 265 (677)
T ss_pred HHHHHHhhCcCEEEEEECCCCccccccccCCCCCCccHHHHHHHHHhcchhHHHHHHHHHHHHHhCcHhHHHHHHHHHHH
Confidence 999999999999999999996 33 1111000 000 0111
Q ss_pred ----------HHHhhcCeeEE-EEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCCCCCCC
Q 016909 222 ----------VKGRAYGVRSI-RVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTS 275 (380)
Q Consensus 222 ----------~~a~a~G~~~~-~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R~~gHs~~ 275 (380)
.++++|||..+ .|||||++++.++++.+.+. ..++|++|.++|-+..|...+
T Consensus 266 ~k~~~~~~~~~~fe~~G~~y~g~iDGHd~~~L~~al~~~k~~--~~~~P~vihv~T~KGkG~~~a 328 (677)
T PLN02582 266 ARGMISGSGSTLFEELGLYYIGPVDGHNIDDLVTILREVKST--KTTGPVLIHVVTEKGRGYPYA 328 (677)
T ss_pred hhhccCccccchHHHcCCeEEeeeCCCCHHHHHHHHHHHHhc--CCCCCEEEEEEecCCCCCChh
Confidence 24899999966 79999999999999988753 116999999999999887655
No 42
>PRK05261 putative phosphoketolase; Provisional
Probab=99.82 E-value=1.4e-19 Score=191.95 Aligned_cols=201 Identities=21% Similarity=0.234 Sum_probs=158.0
Q ss_pred cccccccchhHHHHHHHHhcCCCC--cEEEccccchHH------HHHcC--------CCHHHH-HHHhhcCCCCCCCCCC
Q 016909 64 ISFYLTTSGEEAINIASAAAIKND--DFVVPQYREPGV------LLWRG--------FSMQEF-ANQCFGNKADYGKGRQ 126 (380)
Q Consensus 64 i~~~~~~~GqEa~~~~~~~~l~~~--D~v~~~yR~~~~------~l~~G--------~~~~~~-l~e~~g~~~~~~~G~~ 126 (380)
+|.|-++.|+..+.+++...++.. |.++..--||+. +...| ++.++. |..++-+- +.-.+
T Consensus 49 ~GHwGt~pgln~vyahln~li~~~~~~~~~V~g~GHg~p~~~a~~~L~Gs~~~~yp~is~d~~gl~~lfrqf---s~pgg 125 (785)
T PRK05261 49 LGHWGTTPGLNFIYAHLNRLIRKYDLNMIYITGPGHGGPAMVANAYLEGTYSEIYPEITQDEEGMARLFKQF---SFPGG 125 (785)
T ss_pred CCCCCCcHHHHHHHHHHHHHHhhcCCceEEEeCCCccHHHHHHHHHHcCCCcccCCCCCccHHHHHHHHHhc---cCCCC
Confidence 467888999999999999988864 755555556642 22356 333331 33222221 11236
Q ss_pred CccccCCCCCCcccccccccCccHHHHHHHHHhhhcCCCceeEEEeCccccCcchH---HHHHHHHHHcCC-CEEEEEEc
Q 016909 127 MPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDF---HAALNFSAVTEA-PVIFICRN 202 (380)
Q Consensus 127 ~~~H~~~~~~~~~~~~g~lG~~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~---~Eal~~A~~~~L-pvi~vv~N 202 (380)
+++|+....+|+...+|+||+++++|+|+|+. +++.+|+|++|||++++|.+ |++.+++..+++ +|+.|+++
T Consensus 126 ~~sH~~~~tPGi~~~~G~LG~gls~A~G~Al~----~~d~iv~~~vGDGE~EeG~lAa~W~~~~~~~~~~~g~vLPIld~ 201 (785)
T PRK05261 126 IPSHAAPETPGSIHEGGELGYSLSHAYGAAFD----NPDLIVACVVGDGEAETGPLATSWHSNKFLNPATDGAVLPILHL 201 (785)
T ss_pred cCCCCCCCCCCeeeCCCchhhHHHHHHHHHHc----CCCCEEEEEECcCchhhhhhHHHhhhhhhcccccCCCEEEEEEe
Confidence 88999877899999999999999999999975 56889999999999999984 888888888888 79999999
Q ss_pred CCcceeeecccc-cCCcCHHHHHhhcCeeEEEEeCCCHHHHHHHHHHHHH-----------Hhhcc---CCcE--EEEEE
Q 016909 203 NGWAISTPISDQ-FRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAARE-----------MAIGE---GRPI--LIEAL 265 (380)
Q Consensus 203 N~~~i~~~~~~~-~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~A~~-----------~ar~~---~gP~--lIe~~ 265 (380)
|+|+|++++... .+.+++.+++++|||+++.|||+|+.+++.++++|++ .||.+ .+|+ +|.++
T Consensus 202 Ng~~Is~pt~~~~~~~e~l~~rf~g~Gw~~i~VDG~D~~av~~a~a~al~~~i~~i~~iq~~Ar~~~~~~~P~wp~Ii~r 281 (785)
T PRK05261 202 NGYKIANPTILARISDEELEALFRGYGYEPYFVEGDDPADMHQEMAAALDTAIEEIRAIQKEAREGGDTTRPRWPMIVLR 281 (785)
T ss_pred cCCcCCCCccccccCcHhHHHHHHHCCCeeEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCceEEEEE
Confidence 999999999865 3457899999999999999999999999988776654 44445 5899 99999
Q ss_pred eecCCC
Q 016909 266 TYRVGH 271 (380)
Q Consensus 266 t~R~~g 271 (380)
|...+|
T Consensus 282 T~kG~g 287 (785)
T PRK05261 282 TPKGWT 287 (785)
T ss_pred CCccCC
Confidence 988666
No 43
>PRK11864 2-ketoisovalerate ferredoxin oxidoreductase subunit beta; Provisional
Probab=99.80 E-value=1.3e-18 Score=167.24 Aligned_cols=173 Identities=18% Similarity=0.108 Sum_probs=139.6
Q ss_pred cccchHHHHHcCCCHH-HHHHHhhcCCC------CCCCCCCCccccCCCCCCcccccccccCccHHHHHHHHHhhhcCCC
Q 016909 93 QYREPGVLLWRGFSMQ-EFANQCFGNKA------DYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKD 165 (380)
Q Consensus 93 ~yR~~~~~l~~G~~~~-~~l~e~~g~~~------~~~~G~~~~~H~~~~~~~~~~~~g~lG~~~p~AvG~A~A~k~~~~~ 165 (380)
.||||+.+..+|.++. .++.+.+|+.+ ||+.+.++.+|+.. .++...++++|.++++|.|+++|.+..+.+
T Consensus 14 ~~~gh~~C~GCG~~~~~~~l~~~lg~~~v~~~~iGC~~~~~g~~p~~~--~~~~~i~~~~G~~~~~A~G~a~A~~~~~~~ 91 (300)
T PRK11864 14 FYPGNAACPGCGAPLGLRYLLKALGEKTVLVIPASCSTVIQGDTPKSP--LTVPVLHTAFAATAAVASGIEEALKARGEK 91 (300)
T ss_pred ecCCCccCCCCCCHHHHHHHHHHhCCCeEEEeCCCccceecCCCCccc--ccccceeehhhChHHHHHHHHHHHHhhCCC
Confidence 5799999999998887 88888888776 77777666666554 366667899999999999999999887665
Q ss_pred c-eeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcceeeecccc-----------------cCCcCHHHHHhhc
Q 016909 166 A-CAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQ-----------------FRSDGAVVKGRAY 227 (380)
Q Consensus 166 ~-~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~i~~~~~~~-----------------~~~~~~~~~a~a~ 227 (380)
. .|++++|||++.++.+ |+|+.|+.+++|++|||.||++.+.|-.+.. ....|+.+++.++
T Consensus 92 ~~~Vva~~GDG~~~~~g~-~~l~~A~~~~~~v~~vv~dN~~~~~TGgQ~S~~Tp~ga~t~tsp~G~~~~kkdi~~i~~a~ 170 (300)
T PRK11864 92 GVIVVGWAGDGGTADIGF-QALSGAAERNHDILYIMYDNEAYMNTGIQRSSSTPYGAWTTTTPGGKREHKKPVPDIMAAH 170 (300)
T ss_pred CcEEEEEEccCccccccH-HHHHHHHHhCcCEEEEEECCeeeecCCCCCCCCCcCCCccccCCCCCcCCCCCHHHHHHHc
Confidence 4 4555999999988886 9999999999999999999998665432211 1234788999999
Q ss_pred CeeEE-EEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCCCC
Q 016909 228 GVRSI-RVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHH 272 (380)
Q Consensus 228 G~~~~-~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R~~gH 272 (380)
|.+.+ +++-.|+.++.+++++|++ .+||.+|++.+--..++
T Consensus 171 g~~yVA~~~~~~~~~~~~~i~~A~~----~~Gps~I~~~spC~~~~ 212 (300)
T PRK11864 171 KVPYVATASIAYPEDFIRKLKKAKE----IRGFKFIHLLAPCPPGW 212 (300)
T ss_pred CCCEEEEEeCCCHHHHHHHHHHHHh----CCCCEEEEEeCCCCCCC
Confidence 99655 6888899999999999987 48999999987544443
No 44
>cd02004 TPP_BZL_OCoD_HPCL Thiamine pyrophosphate (TPP) family, BZL_OCoD_HPCL subfamily, TPP-binding module; composed of proteins similar to benzaldehyde lyase (BZL), oxalyl-CoA decarboxylase (OCoD) and 2-hydroxyphytanoyl-CoA lyase (2-HPCL). Pseudomonas fluorescens biovar I BZL cleaves the acyloin linkage of benzoin producing 2 molecules of benzaldehyde and enabling the Pseudomonas to grow on benzoin as the sole carbon and energy source. OCoD has a role in the detoxification of oxalate, catalyzing the decarboxylation of oxalyl-CoA to formate. 2-HPCL is a peroxisomal enzyme which plays a role in the alpha-oxidation of 3-methyl-branched fatty acids, catalyzing the cleavage of 2-hydroxy-3-methylacyl-CoA into formyl-CoA and a 2-methyl-branched fatty aldehyde. All these enzymes depend on Mg2+ and TPP for activity.
Probab=99.77 E-value=4e-18 Score=152.32 Aligned_cols=114 Identities=22% Similarity=0.273 Sum_probs=93.3
Q ss_pred ccccccCccHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEc-CCcceeeeccc------
Q 016909 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRN-NGWAISTPISD------ 213 (380)
Q Consensus 141 ~~g~lG~~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~N-N~~~i~~~~~~------ 213 (380)
..|+||.++|.|+|+++|. ++++|+|++|||++++. .++|++|++++||+++||.| |+|++......
T Consensus 46 ~~g~mG~~lp~AiGa~la~----~~~~vv~i~GDG~f~~~--~~el~ta~~~~lpv~ivv~NN~~~~~~~~~~~~~~~~~ 119 (172)
T cd02004 46 TFGTLGVGLGYAIAAALAR----PDKRVVLVEGDGAFGFS--GMELETAVRYNLPIVVVVGNNGGWYQGLDGQQLSYGLG 119 (172)
T ss_pred CCCcccchHHHHHHHHHhC----CCCeEEEEEcchhhcCC--HHHHHHHHHcCCCEEEEEEECcccccchhhhhhhccCC
Confidence 4588999999999998884 57899999999999864 47799999999997776655 56877653322
Q ss_pred -----ccCCcCHHHHHhhcCeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEe
Q 016909 214 -----QFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALT 266 (380)
Q Consensus 214 -----~~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t 266 (380)
.....++.+++++||+++.+|+ +++++.++++++.+ .++|+|||+++
T Consensus 120 ~~~~~~~~~~d~~~la~a~G~~~~~v~--~~~el~~al~~a~~----~~~p~liev~i 171 (172)
T cd02004 120 LPVTTLLPDTRYDLVAEAFGGKGELVT--TPEELKPALKRALA----SGKPALINVII 171 (172)
T ss_pred CceeccCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHH----cCCCEEEEEEc
Confidence 1245689999999999999999 78998888888765 47999999976
No 45
>cd00568 TPP_enzymes Thiamine pyrophosphate (TPP) enzyme family, TPP-binding module; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. These enzymes include, among others, the E1 components of the pyruvate, the acetoin and the branched chain alpha-keto acid dehydrogenase complexes.
Probab=99.76 E-value=3.4e-18 Score=151.20 Aligned_cols=116 Identities=30% Similarity=0.350 Sum_probs=95.4
Q ss_pred ccccccccCccHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcceeeecc------
Q 016909 139 FTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPIS------ 212 (380)
Q Consensus 139 ~~~~g~lG~~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~i~~~~~------ 212 (380)
....|+||+++|.|+|++++. ++++|+|++|||++++ .+++|++|..+++|+++||.||++...+...
T Consensus 42 ~~~~g~~G~~~~~a~Gaa~a~----~~~~vv~~~GDG~~~~--~~~~l~ta~~~~~~~~~iv~nN~~~~~~~~~~~~~~~ 115 (168)
T cd00568 42 STGFGAMGYGLPAAIGAALAA----PDRPVVCIAGDGGFMM--TGQELATAVRYGLPVIVVVFNNGGYGTIRMHQEAFYG 115 (168)
T ss_pred CCCchhhhhhHHHHHHHHHhC----CCCcEEEEEcCcHHhc--cHHHHHHHHHcCCCcEEEEEECCccHHHHHHHHHHcC
Confidence 445799999999999999986 4789999999999987 5699999999999999988888754443321
Q ss_pred -----cccCCcCHHHHHhhcCeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEe
Q 016909 213 -----DQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALT 266 (380)
Q Consensus 213 -----~~~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t 266 (380)
......++.+++++||+++++|+ +++++.++++++.+ .++|++||++|
T Consensus 116 ~~~~~~~~~~~d~~~~a~~~G~~~~~v~--~~~~l~~a~~~a~~----~~~p~~i~v~~ 168 (168)
T cd00568 116 GRVSGTDLSNPDFAALAEAYGAKGVRVE--DPEDLEAALAEALA----AGGPALIEVKT 168 (168)
T ss_pred CCcccccCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHh----CCCCEEEEEEC
Confidence 22345689999999999999998 68888888877763 68999999975
No 46
>cd02013 TPP_Xsc_like Thiamine pyrophosphate (TPP) family, Xsc-like subfamily, TPP-binding module; composed of proteins similar to Alcaligenes defragrans sulfoacetaldehyde acetyltransferase (Xsc). Xsc plays a key role in the degradation of taurine, catalyzing the desulfonation of 2-sulfoacetaldehyde into sulfite and acetyl phosphate. This enzyme requires TPP and divalent metal ions for activity.
Probab=99.76 E-value=4.4e-18 Score=155.43 Aligned_cols=120 Identities=23% Similarity=0.280 Sum_probs=96.9
Q ss_pred ccccccCccHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEE-EcCCcceeeeccc------
Q 016909 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFIC-RNNGWAISTPISD------ 213 (380)
Q Consensus 141 ~~g~lG~~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv-~NN~~~i~~~~~~------ 213 (380)
..|+||+++|.|+|+++|. ++++|||++|||+|++. ..+|.+|+++++|+++|| +|++|++......
T Consensus 51 ~~g~mG~~lpaaiGa~la~----p~r~vv~i~GDG~f~m~--~~eL~Ta~~~~lpvi~vV~NN~~yg~~~~~q~~~~~~~ 124 (196)
T cd02013 51 SFGNCGYALPAIIGAKAAA----PDRPVVAIAGDGAWGMS--MMEIMTAVRHKLPVTAVVFRNRQWGAEKKNQVDFYNNR 124 (196)
T ss_pred CCcccccHHHHHHHHHHhC----CCCcEEEEEcchHHhcc--HHHHHHHHHhCCCeEEEEEECchhHHHHHHHHHHcCCC
Confidence 3588999999999998884 68899999999999874 456899999999987777 5566776432110
Q ss_pred ----ccCCcCHHHHHhhcCeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecC
Q 016909 214 ----QFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRV 269 (380)
Q Consensus 214 ----~~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R~ 269 (380)
.....|+++.|++||+++++|+ ++.++.+++++|++.+|. ++|+|||+.+.+.
T Consensus 125 ~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~el~~al~~a~~~~~~-~~p~liev~v~~~ 181 (196)
T cd02013 125 FVGTELESESFAKIAEACGAKGITVD--KPEDVGPALQKAIAMMAE-GKTTVIEIVCDQE 181 (196)
T ss_pred cccccCCCCCHHHHHHHCCCEEEEEC--CHHHHHHHHHHHHhcCCC-CCeEEEEEEeCcc
Confidence 1234789999999999999999 899999999999875443 7899999998653
No 47
>PF13292 DXP_synthase_N: 1-deoxy-D-xylulose-5-phosphate synthase; PDB: 2O1X_C 2O1S_B.
Probab=99.75 E-value=1.2e-17 Score=156.07 Aligned_cols=217 Identities=18% Similarity=0.175 Sum_probs=144.8
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCcccccccchhHHHHHHHHhcCC-CCcEEEc--cccchHHHHHcC
Q 016909 29 SFVKVSEGVAIKMYNDMVTLQTMDTIFYEA-QRQGRISFYLTTSGEEAINIASAAAIK-NDDFVVP--QYREPGVLLWRG 104 (380)
Q Consensus 29 ~~~~~~~~~l~~~y~~M~~~R~~e~~~~~~-~~~g~i~~~~~~~GqEa~~~~~~~~l~-~~D~v~~--~yR~~~~~l~~G 104 (380)
+...++.++|..+-..+ |.+ +... .+.| +.+.++.|---..+++-..++ |.|.++. .|....|-+..|
T Consensus 9 dlk~ls~~eL~~La~ei---R~~---ii~~vs~~G--GHl~snLGvVELTiALH~vFd~p~DkivwDvGHQ~Y~HKiLTG 80 (270)
T PF13292_consen 9 DLKKLSIEELEQLAQEI---REF---IIETVSKTG--GHLASNLGVVELTIALHYVFDSPKDKIVWDVGHQAYVHKILTG 80 (270)
T ss_dssp HHTTS-GGGHHHHHHHH---HHH---HHHHCTCCC--STHHHHHCCHHHHHHHHHHS-TTTSEEEESSSTT-HHHHHCTT
T ss_pred HHHcCCHHHHHHHHHHH---HHH---HHHHHhhcC--CCCCCCccHHHHHHHHHHHhCCCCCeEEEecccccchhhhccC
Confidence 45677888887765544 433 2222 1222 566778887777788888887 7898886 699999999888
Q ss_pred CCHHHHHHHhhcCCCCCCCCCCCccccCCCC-CCcccccccccCccHHHHHHHHHhhhcCCCceeEEEeCccccCcchHH
Q 016909 105 FSMQEFANQCFGNKADYGKGRQMPIHYGSNK-HNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFH 183 (380)
Q Consensus 105 ~~~~~~l~e~~g~~~~~~~G~~~~~H~~~~~-~~~~~~~g~lG~~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~ 183 (380)
.. +.|..++.. .|+++.+...+ +.-....|+-+.++++|+|+|.|.++.+.+..||+++|||++.-|+.+
T Consensus 81 R~--~~f~TlRq~-------gGlSGF~~r~ES~~D~f~~GHsstsiSaa~Gma~ar~l~~~~~~vVaVIGDGalt~Gma~ 151 (270)
T PF13292_consen 81 RR--DRFHTLRQY-------GGLSGFPKRSESEYDAFGAGHSSTSISAALGMAVARDLKGEDRKVVAVIGDGALTGGMAF 151 (270)
T ss_dssp TC--CCGGGTTST-------TS--SS--TTT-TT--S--SSSS-HHHHHHHHHHHHHHHTS---EEEEEETTGGGSHHHH
T ss_pred cH--HHhchhhhc-------CCcCCCCCcccCCCCcccCCccHhHHHHHHHHHHHHHhcCCCCcEEEEECCcchhHHHHH
Confidence 63 345555542 33444443322 333456899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCEEEEEEcCCcceeeecccc-------cC--------------------C-------cC-H----HHHH
Q 016909 184 AALNFSAVTEAPVIFICRNNGWAISTPISDQ-------FR--------------------S-------DG-A----VVKG 224 (380)
Q Consensus 184 Eal~~A~~~~Lpvi~vv~NN~~~i~~~~~~~-------~~--------------------~-------~~-~----~~~a 224 (380)
||||-|+..+-++|+|+++|+.+|+...... .. . .+ + ...+
T Consensus 152 EALN~~g~~~~~liVILNDN~mSIs~nvGals~~L~~l~~~~~y~~~k~~~~~~l~~~~~~~~~~~r~~~s~K~~~~~lF 231 (270)
T PF13292_consen 152 EALNNAGHLKSNLIVILNDNEMSISPNVGALSKYLSKLRSSPTYNKLKEDVKSLLKKIPPIEEFAKRIKESLKGFSPNLF 231 (270)
T ss_dssp HHHHHHHHHT-SEEEEEEE-SBSSSB--SSHCCC-------------------------------------------CCC
T ss_pred HHHHHHHhcCCCEEEEEeCCCcccCCCcchHHHHHHhccchhHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhhhhHHHH
Confidence 9999999999999999999999887543200 00 0 00 0 1236
Q ss_pred hhcCeeEEE-EeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEe
Q 016909 225 RAYGVRSIR-VDGNDALAIYSAVHAAREMAIGEGRPILIEALT 266 (380)
Q Consensus 225 ~a~G~~~~~-VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t 266 (380)
+.+|+..+- |||||..++.++++.+.+ -+||+||.++|
T Consensus 232 e~LG~~Y~GPiDGHdl~~Li~~l~~~K~----~~gPvllHV~T 270 (270)
T PF13292_consen 232 EELGFDYIGPIDGHDLEELIEVLENAKD----IDGPVLLHVIT 270 (270)
T ss_dssp HHCT-EEEEEEETT-HHHHHHHHHHHCC----SSSEEEEEEE-
T ss_pred HHcCCeEEeccCCCCHHHHHHHHHHHhc----CCCCEEEEEeC
Confidence 777998886 899999999999988765 58999999987
No 48
>cd02006 TPP_Gcl Thiamine pyrophosphate (TPP) family, Gcl subfamily, TPP-binding module; composed of proteins similar to Escherichia coli glyoxylate carboligase (Gcl). E. coli glyoxylate carboligase, plays a key role in glyoxylate metabolism where it catalyzes the condensation of two molecules of glyoxylate to give tartronic semialdehyde and carbon dioxide. This enzyme requires TPP, magnesium ion and FAD as cofactors.
Probab=99.74 E-value=9.9e-18 Score=153.77 Aligned_cols=121 Identities=22% Similarity=0.239 Sum_probs=96.9
Q ss_pred ccccccCccHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCC-cceeeeccc------
Q 016909 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPISD------ 213 (380)
Q Consensus 141 ~~g~lG~~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~-~~i~~~~~~------ 213 (380)
..|+||+++|.|+|+++|. +++.|||++|||+|+.. ..+|.+|++++||+++||.||+ |++......
T Consensus 55 ~~GsmG~~lpaaiGa~la~----p~~~vv~i~GDG~f~m~--~~eL~Ta~~~~lpviivV~NN~~yg~~~~~q~~~~~~~ 128 (202)
T cd02006 55 QAGPLGWTVPAALGVAAAD----PDRQVVALSGDYDFQFM--IEELAVGAQHRIPYIHVLVNNAYLGLIRQAQRAFDMDY 128 (202)
T ss_pred CccchhhhhHHHHhHHhhC----CCCeEEEEEeChHhhcc--HHHHHHHHHhCCCeEEEEEeCchHHHHHHHHHHhcCcc
Confidence 4589999999999999884 68899999999999865 3669999999999888777665 665321100
Q ss_pred --------------ccCCcCHHHHHhhcCeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecC
Q 016909 214 --------------QFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRV 269 (380)
Q Consensus 214 --------------~~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R~ 269 (380)
.....|+++.|++||+++.+|+ ++.++.+++++|++.+++.++|+|||+.+.+.
T Consensus 129 ~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~el~~al~~a~~~~~~~~~p~liev~i~~~ 196 (202)
T cd02006 129 QVNLAFENINSSELGGYGVDHVKVAEGLGCKAIRVT--KPEELAAAFEQAKKLMAEHRVPVVVEAILERV 196 (202)
T ss_pred ccccccccccccccCCCCCCHHHHHHHCCCEEEEEC--CHHHHHHHHHHHHHhcccCCCcEEEEEEeccc
Confidence 0013689999999999999998 89999999999987544457999999998543
No 49
>cd02002 TPP_BFDC Thiamine pyrophosphate (TPP) family, BFDC subfamily, TPP-binding module; composed of proteins similar to Pseudomonas putida benzoylformate decarboxylase (BFDC). P. putida BFDC plays a role in the mandelate pathway, catalyzing the conversion of benzoylformate to benzaldehyde and carbon dioxide. This enzyme is dependent on TPP and a divalent metal cation as cofactors.
Probab=99.73 E-value=1.3e-17 Score=149.59 Aligned_cols=112 Identities=29% Similarity=0.305 Sum_probs=93.3
Q ss_pred ccccCccHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCC-cceeeeccc--------
Q 016909 143 STIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPISD-------- 213 (380)
Q Consensus 143 g~lG~~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~-~~i~~~~~~-------- 213 (380)
|+||.++|.|+|+++|. ++++|+|++|||+++++. ++|.+|.++++|+++||.||+ |++......
T Consensus 49 g~mG~~lp~aiGaala~----~~~~vv~i~GDG~f~~~~--~el~ta~~~~~p~~~iV~nN~~~~~~~~~~~~~~~~~~~ 122 (178)
T cd02002 49 GGLGWGLPAAVGAALAN----PDRKVVAIIGDGSFMYTI--QALWTAARYGLPVTVVILNNRGYGALRSFLKRVGPEGPG 122 (178)
T ss_pred ccccchHHHHHHHHhcC----CCCeEEEEEcCchhhccH--HHHHHHHHhCCCeEEEEEcCccHHHHHHHHHHHcCCCcc
Confidence 89999999999999985 578999999999998774 679999999999988888875 877542111
Q ss_pred ---------ccCCcCHHHHHhhcCeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEe
Q 016909 214 ---------QFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALT 266 (380)
Q Consensus 214 ---------~~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t 266 (380)
.....++.+++++||+++++|+ +++++.+++++|++ .++|++||+++
T Consensus 123 ~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~~----~~~p~vi~v~v 178 (178)
T cd02002 123 ENAPDGLDLLDPGIDFAAIAKAFGVEAERVE--TPEELDEALREALA----EGGPALIEVVV 178 (178)
T ss_pred cccccccccCCCCCCHHHHHHHcCCceEEeC--CHHHHHHHHHHHHh----CCCCEEEEEEC
Confidence 1134689999999999999999 58999888888875 57999999864
No 50
>COG1154 Dxs Deoxyxylulose-5-phosphate synthase [Coenzyme metabolism / Lipid metabolism]
Probab=99.72 E-value=1.2e-16 Score=162.84 Aligned_cols=226 Identities=16% Similarity=0.171 Sum_probs=166.7
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH-hcCCcccccccchhHHHHHHHHhcCC-CCcEEEc--cccchHHHHH
Q 016909 27 DSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQ-RQGRISFYLTTSGEEAINIASAAAIK-NDDFVVP--QYREPGVLLW 102 (380)
Q Consensus 27 ~~~~~~~~~~~l~~~y~~M~~~R~~e~~~~~~~-~~g~i~~~~~~~GqEa~~~~~~~~l~-~~D~v~~--~yR~~~~~l~ 102 (380)
+.+...+|.++|..+-+.+ |.+ +.... ..| |...++.|---..+++-..++ |.|.++. .|....|-+.
T Consensus 11 P~dLk~ls~~eL~~La~Ei---R~~---li~~vS~~G--GHlgsnLGvVELTiALH~VF~sP~D~~IwDVgHQaYpHKiL 82 (627)
T COG1154 11 PADLKKLSIEELPQLADEI---REF---LLEVVSATG--GHLGSNLGVVELTIALHYVFDSPKDKLIWDVGHQAYPHKIL 82 (627)
T ss_pred HHHHhhCCHHHHHHHHHHH---HHH---HHHHhccCC--CccCCCcChhhhhHHHHHHhCCCCCCeEEecCcccchhHHh
Confidence 3456678888887765543 322 22222 233 455677787667778877776 7888875 6999999999
Q ss_pred cCCCHHHHHHHhhcCCCCCCCCCCCccccCCCC-CCcccccccccCccHHHHHHHHHhhhcCCCceeEEEeCccccCcch
Q 016909 103 RGFSMQEFANQCFGNKADYGKGRQMPIHYGSNK-HNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGD 181 (380)
Q Consensus 103 ~G~~~~~~l~e~~g~~~~~~~G~~~~~H~~~~~-~~~~~~~g~lG~~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~ 181 (380)
.|.. +-|..++.+ .++++.+...+ ..-+..+|+-+++++.|+|+|.|..+++.++.||+++|||++.-|+
T Consensus 83 TGR~--e~f~tlRq~-------~GlsGf~~r~ESe~D~f~~GHsSTSiSaalG~A~A~~~~g~~~~vvaVIGDGAlt~Gm 153 (627)
T COG1154 83 TGRR--EQFDTLRQK-------DGLSGFPKREESEHDWFGVGHSSTSISAALGMAKARDLKGEDRNVVAVIGDGALTGGM 153 (627)
T ss_pred cCch--hhcchhhhc-------CCCCCCCCcccCCCcccccCchHHHHHHHhhHHHHHHhcCCCCcEEEEECCccccchH
Confidence 8864 566666643 23333333222 2345568999999999999999999999999999999999999999
Q ss_pred HHHHHHHHH-HcCCCEEEEEEcCCcceeeecccc-------cC----------C------------------cC------
Q 016909 182 FHAALNFSA-VTEAPVIFICRNNGWAISTPISDQ-------FR----------S------------------DG------ 219 (380)
Q Consensus 182 ~~Eal~~A~-~~~Lpvi~vv~NN~~~i~~~~~~~-------~~----------~------------------~~------ 219 (380)
.+||||-|+ ..+-|+|+|+++|+.+|+.+.... .. . .+
T Consensus 154 A~EALN~ag~~~~~~~iVILNDNeMSIs~nvGal~~~L~~l~~~~~y~~~~~~~kk~l~~~~~~~~~~~~r~e~~~K~l~ 233 (627)
T COG1154 154 AFEALNNAGADLKSNLIVILNDNEMSISPNVGALSKHLARLRSGPFYQSLREGGKKVLSKVGPPLKRFAKRAEESIKGLL 233 (627)
T ss_pred HHHHHhhhhhccCCCEEEEEeCCCcccCCCccHHHHHHHHHhccchHHHHHHHHHHHHHhhchHHHHHHHHHHHhhhccc
Confidence 999999998 445689999999999998654210 00 0 00
Q ss_pred -HHHHHhhcCeeEEE-EeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCCCCC
Q 016909 220 -AVVKGRAYGVRSIR-VDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHT 273 (380)
Q Consensus 220 -~~~~a~a~G~~~~~-VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R~~gHs 273 (380)
..-.++.+|+..+- +||||.+++..+++.+.+ .++|+||.+.|-...|=.
T Consensus 234 ~~~~lFeelGf~YiGPiDGHni~~Li~~Lk~~kd----~~gPvllHv~T~KGKGY~ 285 (627)
T COG1154 234 VPGTLFEELGFNYIGPIDGHNLEELIPTLKNAKD----LKGPVLLHVVTKKGKGYK 285 (627)
T ss_pred CchhhHHHhCCeeECCcCCCCHHHHHHHHHHHhc----CCCCEEEEEEecCCCCCC
Confidence 01267889999886 899999999999988776 589999999998776643
No 51
>cd02014 TPP_POX Thiamine pyrophosphate (TPP) family, Pyruvate oxidase (POX) subfamily, TPP-binding module; composed of proteins similar to Lactobacillus plantarum POX, which plays a key role in controlling acetate production under aerobic conditions. POX decarboxylates pyruvate, producing hydrogen peroxide and the energy-storage metabolite acetylphosphate. It requires FAD in addition to TPP and a divalent cation as cofactors.
Probab=99.72 E-value=5.6e-17 Score=145.85 Aligned_cols=116 Identities=24% Similarity=0.308 Sum_probs=93.2
Q ss_pred ccccccCccHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCC-cceeeec--------
Q 016909 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPI-------- 211 (380)
Q Consensus 141 ~~g~lG~~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~-~~i~~~~-------- 211 (380)
..|+||+++|.|+|+++|. ++++|+|++|||+++.+ +.| |.+|.++++|+++||.||+ |++....
T Consensus 49 ~~g~mG~~~~~aiGa~~a~----~~~~vv~i~GDG~f~~~-~~e-l~t~~~~~lp~~~iv~NN~~~~~~~~~~~~~~~~~ 122 (178)
T cd02014 49 LLATMGNGLPGAIAAKLAY----PDRQVIALSGDGGFAML-MGD-LITAVKYNLPVIVVVFNNSDLGFIKWEQEVMGQPE 122 (178)
T ss_pred CCchhhhHHHHHHHHHHhC----CCCcEEEEEcchHHHhh-HHH-HHHHHHhCCCcEEEEEECCchhHHHHHHHHhcCCc
Confidence 4589999999999998874 67899999999999877 455 8889999999888887775 7763211
Q ss_pred -ccccCCcCHHHHHhhcCeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeec
Q 016909 212 -SDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 268 (380)
Q Consensus 212 -~~~~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R 268 (380)
.......|+.+.+++||+++++|+ +++++.++++++++ .++|+|||+.+.+
T Consensus 123 ~~~~~~~~d~~~la~a~G~~~~~v~--~~~el~~~l~~a~~----~~~p~liev~~~~ 174 (178)
T cd02014 123 FGVDLPNPDFAKIAEAMGIKGIRVE--DPDELEAALDEALA----ADGPVVIDVVTDP 174 (178)
T ss_pred eeccCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHh----CCCCEEEEEEeCC
Confidence 111234689999999999999998 88888888887765 5799999999854
No 52
>PRK06163 hypothetical protein; Provisional
Probab=99.71 E-value=1.4e-16 Score=146.13 Aligned_cols=130 Identities=20% Similarity=0.166 Sum_probs=100.4
Q ss_pred cccccCccHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHc-CCCEEEEEEcC-Ccceeeeccc-ccCCc
Q 016909 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVT-EAPVIFICRNN-GWAISTPISD-QFRSD 218 (380)
Q Consensus 142 ~g~lG~~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~-~Lpvi~vv~NN-~~~i~~~~~~-~~~~~ 218 (380)
.|+||+++|.|+|+++|. +++.|||++|||+|++. ..+|.+|+++ ++|+++||.|| +|++...... .....
T Consensus 56 ~GsMG~glpaAiGaalA~----p~r~Vv~i~GDG~f~m~--~~eL~Ta~~~~~lpi~ivV~NN~~yg~~~~~~~~~~~~~ 129 (202)
T PRK06163 56 LGSMGLAFPIALGVALAQ----PKRRVIALEGDGSLLMQ--LGALGTIAALAPKNLTIIVMDNGVYQITGGQPTLTSQTV 129 (202)
T ss_pred ecccccHHHHHHHHHHhC----CCCeEEEEEcchHHHHH--HHHHHHHHHhcCCCeEEEEEcCCchhhcCCccCCCCCCC
Confidence 689999999999999984 67899999999999753 4679999877 68988777777 5776432211 12346
Q ss_pred CHHHHHhhcCee-EEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCCCCCCCCCCCCCCChhHHH
Q 016909 219 GAVVKGRAYGVR-SIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDDSTKYRPVDEIE 288 (380)
Q Consensus 219 ~~~~~a~a~G~~-~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R~~gHs~~Dd~~~Yr~~~e~~ 288 (380)
|+.+.|++||++ +++|+ +..++..+++++++ .++|+|||+++.+.. +-|..+|++.|.+
T Consensus 130 Df~~lA~a~G~~~~~~v~--~~~el~~al~~a~~----~~~p~lIeV~i~~~~-----~~~~~~~~~~~~~ 189 (202)
T PRK06163 130 DVVAIARGAGLENSHWAA--DEAHFEALVDQALS----GPGPSFIAVRIDDKP-----GVGTTERDPAQIR 189 (202)
T ss_pred CHHHHHHHCCCceEEEeC--CHHHHHHHHHHHHh----CCCCEEEEEEecCCC-----CCCCCCCCHHHHH
Confidence 899999999998 67888 99999999999875 489999999986432 2244557776654
No 53
>cd02015 TPP_AHAS Thiamine pyrophosphate (TPP) family, Acetohydroxyacid synthase (AHAS) subfamily, TPP-binding module; composed of proteins similar to the large catalytic subunit of AHAS. AHAS catalyzes the condensation of two molecules of pyruvate to give the acetohydroxyacid, 2-acetolactate. 2-Acetolactate is the precursor of the branched chain amino acids, valine and leucine. AHAS also catalyzes the condensation of pyruvate and 2-ketobutyrate to form 2-aceto-2-hydroxybutyrate in isoleucine biosynthesis. In addition to requiring TPP and a divalent metal ion as cofactors, AHAS requires FAD.
Probab=99.70 E-value=1.7e-16 Score=143.61 Aligned_cols=116 Identities=25% Similarity=0.326 Sum_probs=91.7
Q ss_pred ccccccCccHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCC-cceeeec--------
Q 016909 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPI-------- 211 (380)
Q Consensus 141 ~~g~lG~~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~-~~i~~~~-------- 211 (380)
..|+||+++|.|+|+++|. ++++|||++|||+|+.. ..+|.+|+++++|+++||.||+ |++....
T Consensus 48 ~~g~mG~~lp~aiGa~la~----~~~~vv~i~GDG~f~~~--~~eL~ta~~~~lpi~ivV~nN~~~~~~~~~~~~~~~~~ 121 (186)
T cd02015 48 GLGTMGFGLPAAIGAKVAR----PDKTVICIDGDGSFQMN--IQELATAAQYNLPVKIVILNNGSLGMVRQWQELFYEGR 121 (186)
T ss_pred CccchhchHHHHHHHHHhC----CCCeEEEEEcccHHhcc--HHHHHHHHHhCCCeEEEEEECCccHHHHHHHHHHcCCc
Confidence 3589999999999999884 57899999999999853 4669999999999888776666 4432210
Q ss_pred ---ccccCCcCHHHHHhhcCeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeec
Q 016909 212 ---SDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 268 (380)
Q Consensus 212 ---~~~~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R 268 (380)
.......|+++.|++||+++++|+ +.+++.+++++|++ .++|+|||+.+.+
T Consensus 122 ~~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~~----~~~p~liev~~~~ 175 (186)
T cd02015 122 YSHTTLDSNPDFVKLAEAYGIKGLRVE--KPEELEAALKEALA----SDGPVLLDVLVDP 175 (186)
T ss_pred eeeccCCCCCCHHHHHHHCCCceEEeC--CHHHHHHHHHHHHh----CCCCEEEEEEeCC
Confidence 011234689999999999999999 68888888877764 5899999999954
No 54
>cd03372 TPP_ComE Thiamine pyrophosphate (TPP) family, ComE subfamily, TPP-binding module; composed of proteins similar to Methanococcus jannaschii sulfopyruvate decarboxylase beta subunit (ComE). M. jannaschii sulfopyruvate decarboxylase (ComDE) is a dodecamer of six alpha (D) subunits and six (E) beta subunits, which catalyzes the decarboxylation of sulfopyruvic acid to sulfoacetaldehyde in the coenzyme M pathway. ComDE requires TPP and divalent metal cation cofactors.
Probab=99.70 E-value=2.5e-16 Score=141.88 Aligned_cols=115 Identities=17% Similarity=0.152 Sum_probs=92.2
Q ss_pred cccccCccHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCC-CEEE-EEEcCCcceeeeccccc-CCc
Q 016909 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEA-PVIF-ICRNNGWAISTPISDQF-RSD 218 (380)
Q Consensus 142 ~g~lG~~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~L-pvi~-vv~NN~~~i~~~~~~~~-~~~ 218 (380)
.|+||+++|.|+|+++|.+ ++|+|++|||+++++ ..++.+|.++++ |+++ |++||+|++........ ...
T Consensus 41 ~g~mG~~lp~AiGaala~~-----~~vv~i~GDG~f~m~--~~el~ta~~~~~~~l~vvV~NN~~~~~~~~~~~~~~~~~ 113 (179)
T cd03372 41 LGSMGLASSIGLGLALAQP-----RKVIVIDGDGSLLMN--LGALATIAAEKPKNLIIVVLDNGAYGSTGNQPTHAGKKT 113 (179)
T ss_pred ccchhhHHHHHHHHHhcCC-----CcEEEEECCcHHHhC--HHHHHHHHHcCCCCEEEEEEcCccccccCCCCCCCCCCC
Confidence 7999999999999999853 789999999999754 357888999996 6555 56777788764332222 256
Q ss_pred CHHHHHhhcCeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCC
Q 016909 219 GAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVG 270 (380)
Q Consensus 219 ~~~~~a~a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R~~ 270 (380)
++.++|++||+++.+|+| +++++.+++++++ ++|++||+.|.+..
T Consensus 114 d~~~lA~a~G~~~~~v~~-~~~el~~al~~a~------~gp~lIev~~~~~~ 158 (179)
T cd03372 114 DLEAVAKACGLDNVATVA-SEEAFEKAVEQAL------DGPSFIHVKIKPGN 158 (179)
T ss_pred CHHHHHHHcCCCeEEecC-CHHHHHHHHHHhc------CCCEEEEEEEcCCC
Confidence 899999999999999987 7888888887775 58999999996543
No 55
>cd02003 TPP_IolD Thiamine pyrophosphate (TPP) family, IolD subfamily, TPP-binding module; composed of proteins similar to Rhizobium leguminosarum bv. viciae IolD. IolD plays an important role in myo-inositol catabolism.
Probab=99.69 E-value=1.7e-16 Score=146.01 Aligned_cols=117 Identities=17% Similarity=0.202 Sum_probs=92.7
Q ss_pred ccccccCccHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEE-EcCCcceeeeccc------
Q 016909 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFIC-RNNGWAISTPISD------ 213 (380)
Q Consensus 141 ~~g~lG~~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv-~NN~~~i~~~~~~------ 213 (380)
..|+||+++|.|+|+++|. ++++|||++|||+|+++. .+|.+|++++||+++|| +||+|++......
T Consensus 46 ~~gsmG~~lpaAiGa~la~----p~~~vv~i~GDGsf~m~~--~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~~~~ 119 (205)
T cd02003 46 GYSCMGYEIAAGLGAKLAK----PDREVYVLVGDGSYLMLH--SEIVTAVQEGLKIIIVLFDNHGFGCINNLQESTGSGS 119 (205)
T ss_pred CcchhhhHHHHHHHHHHhC----CCCeEEEEEccchhhccH--HHHHHHHHcCCCCEEEEEECCccHHHHHHHHHhcCcc
Confidence 4588999999999999884 688999999999998753 56999999999965555 5555765321100
Q ss_pred -----------------ccCCcCHHHHHhhcCeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecC
Q 016909 214 -----------------QFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRV 269 (380)
Q Consensus 214 -----------------~~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R~ 269 (380)
.....|+.++|++||+++.+|+ +++++.+++++|++ .++|+|||+.+.+.
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~d~~~~A~a~G~~~~~v~--~~~el~~al~~a~~----~~gp~lIeV~v~~~ 186 (205)
T cd02003 120 FGTEFRDRDQESGQLDGALLPVDFAANARSLGARVEKVK--TIEELKAALAKAKA----SDRTTVIVIKTDPK 186 (205)
T ss_pred ccchhcccccccccccCCCCCCCHHHHHHhCCCEEEEEC--CHHHHHHHHHHHHh----CCCCEEEEEEeecc
Confidence 0124689999999999999997 99999999998875 48999999999653
No 56
>cd02008 TPP_IOR_alpha Thiamine pyrophosphate (TPP) family, IOR-alpha subfamily, TPP-binding module; composed of proteins similar to indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit. IOR catalyzes the oxidative decarboxylation of arylpyruvates, such as indolepyruvate or phenylpyruvate, which are generated by the transamination of aromatic amino acids, to the corresponding aryl acetyl-CoA.
Probab=99.69 E-value=2.9e-16 Score=141.28 Aligned_cols=117 Identities=21% Similarity=0.139 Sum_probs=92.0
Q ss_pred ccccccCccHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcC-Ccceeeeccc------
Q 016909 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN-GWAISTPISD------ 213 (380)
Q Consensus 141 ~~g~lG~~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN-~~~i~~~~~~------ 213 (380)
..|+||+++|.|+|+++|. +++.||+++|||++++.. +++|.+|+++++|+++||.|| .|++......
T Consensus 49 ~~g~mG~gl~~AiGa~la~----p~~~Vv~i~GDG~f~~~g-~~eL~ta~~~~l~i~vvV~nN~~~g~~~~~~~~~~~~~ 123 (178)
T cd02008 49 TCTCMGASIGVAIGMAKAS----EDKKVVAVIGDSTFFHSG-ILGLINAVYNKANITVVILDNRTTAMTGGQPHPGTGKT 123 (178)
T ss_pred ccccCccHHHHHhhHHhhC----CCCCEEEEecChHHhhcc-HHHHHHHHHcCCCEEEEEECCcceeccCCCCCCCCccc
Confidence 5789999999999999985 578999999999996432 578999999999977666555 4655432211
Q ss_pred ---ccCCcCHHHHHhhcCeeEEEE-eCCCHHHHHHHHHHHHHHhhccCCcEEEEEEe
Q 016909 214 ---QFRSDGAVVKGRAYGVRSIRV-DGNDALAIYSAVHAAREMAIGEGRPILIEALT 266 (380)
Q Consensus 214 ---~~~~~~~~~~a~a~G~~~~~V-dG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t 266 (380)
.....|+.+++++||+++++| ++++..++.+++++|++ .++|+||+++.
T Consensus 124 ~~~~~~~~d~~~~a~a~G~~~~~v~~~~~l~~~~~al~~a~~----~~gp~lI~v~~ 176 (178)
T cd02008 124 LTEPTTVIDIEALVRAIGVKRVVVVDPYDLKAIREELKEALA----VPGVSVIIAKR 176 (178)
T ss_pred ccCCCCccCHHHHHHHCCCCEEEecCccCHHHHHHHHHHHHh----CCCCEEEEEeC
Confidence 112468999999999999998 67888887788888875 47999999864
No 57
>TIGR03846 sulfopy_beta sulfopyruvate decarboxylase, beta subunit. Nearly every member of this protein family is the beta subunit, or else the C-terminal region, of sulfopyruvate decarboxylase, in an archaeal species capable of coenzyme M biosynthesis. However, the enzyme also occurs in Roseovarius nubinhibens ISM in a degradative pathway, where the resulting sulfoacetaldehyde is desulfonated to acetyl phosphate, then converted to acetyl-CoA (see PubMed:19581363).
Probab=99.69 E-value=3.6e-16 Score=141.15 Aligned_cols=113 Identities=19% Similarity=0.236 Sum_probs=90.8
Q ss_pred cccccCccHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCC-CEEEEEEcCC-cceeeeccccc-CCc
Q 016909 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEA-PVIFICRNNG-WAISTPISDQF-RSD 218 (380)
Q Consensus 142 ~g~lG~~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~L-pvi~vv~NN~-~~i~~~~~~~~-~~~ 218 (380)
.|++|.++|.|+|+++|. +++|||++|||+|+++. ++|.+|+++++ |+++||.||+ |++........ ...
T Consensus 41 ~gsmG~~lpaAiGa~la~-----~~~Vv~i~GDG~f~m~~--~el~ta~~~~~~pv~~vV~NN~~yg~~~~q~~~~~~~~ 113 (181)
T TIGR03846 41 LGSMGLASSIGLGLALAT-----DRTVIVIDGDGSLLMNL--GVLPTIAAESPKNLILVILDNGAYGSTGNQPTPASRRT 113 (181)
T ss_pred ccccccHHHHHHHHHHcC-----CCcEEEEEcchHHHhhh--hHHHHHHHhCCCCeEEEEEeCCccccccCcCCCCCCCC
Confidence 789999999999999984 67899999999998653 67999999995 9888876665 77654221111 256
Q ss_pred CHHHHHhhcCeeEEE-EeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeec
Q 016909 219 GAVVKGRAYGVRSIR-VDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 268 (380)
Q Consensus 219 ~~~~~a~a~G~~~~~-VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R 268 (380)
|+++.|++||+++.+ |+ ++.++.++++ +++ .++|+||++.+.+
T Consensus 114 d~~~lA~a~G~~~~~~v~--~~~~l~~al~-a~~----~~~p~li~v~~~~ 157 (181)
T TIGR03846 114 DLELVAKAAGIRNVEKVA--DEEELRDALK-ALA----MKGPTFIHVKVKP 157 (181)
T ss_pred CHHHHHHHCCCCeEEEeC--CHHHHHHHHH-HHc----CCCCEEEEEEeCC
Confidence 899999999999998 76 8999988885 553 5799999999854
No 58
>cd03371 TPP_PpyrDC Thiamine pyrophosphate (TPP) family, PpyrDC subfamily, TPP-binding module; composed of proteins similar to phosphonopyruvate decarboxylase (PpyrDC) proteins. PpyrDC is a homotrimeric enzyme which functions in the biosynthesis of C-P compounds such as bialaphos tripeptide in Streptomyces hygroscopicus. These proteins require TPP and divalent metal cation cofactors.
Probab=99.69 E-value=5.8e-16 Score=140.65 Aligned_cols=118 Identities=20% Similarity=0.137 Sum_probs=93.3
Q ss_pred ccccccCccHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCC-CEEEEEEcCC-cceeeecccccCCc
Q 016909 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEA-PVIFICRNNG-WAISTPISDQFRSD 218 (380)
Q Consensus 141 ~~g~lG~~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~L-pvi~vv~NN~-~~i~~~~~~~~~~~ 218 (380)
++|+||+++|.|+|+++|. +++.|||++|||+|+. ..++|.+++++++ |+++||.||+ |++...........
T Consensus 46 ~~g~mG~~lpaAiGaala~----p~~~Vv~i~GDG~f~m--~~~eL~ta~~~~l~~i~ivV~NN~~yg~~~~~~~~~~~~ 119 (188)
T cd03371 46 TVGSMGHASQIALGIALAR----PDRKVVCIDGDGAALM--HMGGLATIGGLAPANLIHIVLNNGAHDSVGGQPTVSFDV 119 (188)
T ss_pred ecCccccHHHHHHHHHHhC----CCCcEEEEeCCcHHHh--hccHHHHHHHcCCCCcEEEEEeCchhhccCCcCCCCCCC
Confidence 3499999999999999985 5789999999999974 3467999999997 6666665554 66543222222346
Q ss_pred CHHHHHhhcCeeE-EEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCC
Q 016909 219 GAVVKGRAYGVRS-IRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVG 270 (380)
Q Consensus 219 ~~~~~a~a~G~~~-~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R~~ 270 (380)
++++.|++||+++ .+|+ ++.++.++++++++ .++|+|||+.+-+..
T Consensus 120 d~~~~A~a~G~~~~~~v~--~~~el~~al~~a~~----~~~p~lIev~~~~~~ 166 (188)
T cd03371 120 SLPAIAKACGYRAVYEVP--SLEELVAALAKALA----ADGPAFIEVKVRPGS 166 (188)
T ss_pred CHHHHHHHcCCceEEecC--CHHHHHHHHHHHHh----CCCCEEEEEEecCCC
Confidence 8999999999997 5788 89999999998875 479999999996654
No 59
>cd02001 TPP_ComE_PpyrDC Thiamine pyrophosphate (TPP) family, ComE and PpyrDC subfamily, TPP-binding module; composed of proteins similar to sulfopyruvate decarboxylase beta subunit (ComE) and phosphonopyruvate decarboxylase (Ppyr decarboxylase). Methanococcus jannaschii sulfopyruvate decarboxylase (ComDE) is a dodecamer of six alpha (D) subunits and six (E) beta subunits which, catalyzes the decarboxylation of sulfopyruvic acid to sulfoacetaldehyde in the coenzyme M pathway. Ppyr decarboxylase is a homotrimeric enzyme which functions in the biosynthesis of C-P compounds such as bialaphos tripeptide in Streptomyces hygroscopicus. Ppyr decarboxylase and ComDE require TPP and divalent metal cation cofactors.
Probab=99.69 E-value=1.4e-16 Score=140.61 Aligned_cols=113 Identities=13% Similarity=0.057 Sum_probs=91.6
Q ss_pred cccccCccHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHc-CCCEEEEE-EcCCcceeeecccccCCcC
Q 016909 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVT-EAPVIFIC-RNNGWAISTPISDQFRSDG 219 (380)
Q Consensus 142 ~g~lG~~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~-~Lpvi~vv-~NN~~~i~~~~~~~~~~~~ 219 (380)
.|+||.++|.|+|+++|. +++|||++|||+|+.. ..+|.+++++ ++|+++|| +|+.|++...........|
T Consensus 41 ~gsmG~~lp~AiGa~~a~-----~~~Vv~i~GDG~f~m~--~~el~t~~~~~~~~i~~vV~nN~~~g~~~~~~~~~~~~d 113 (157)
T cd02001 41 LGSMGLAGSIGLGLALGL-----SRKVIVVDGDGSLLMN--PGVLLTAGEFTPLNLILVVLDNRAYGSTGGQPTPSSNVN 113 (157)
T ss_pred ecchhhHHHHHHHHHhcC-----CCcEEEEECchHHHhc--ccHHHHHHHhcCCCEEEEEEeCccccccCCcCCCCCCCC
Confidence 799999999999999985 2789999999999643 3558899998 59987777 5555776542222223579
Q ss_pred HHHHHhhcCeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEee
Q 016909 220 AVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTY 267 (380)
Q Consensus 220 ~~~~a~a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~ 267 (380)
+.+.|++||+++++|+ +++++.++++++++ .++|++|++.+.
T Consensus 114 ~~~lA~a~G~~~~~v~--~~~el~~al~~a~~----~~gp~vi~v~i~ 155 (157)
T cd02001 114 LEAWAAACGYLVLSAP--LLGGLGSEFAGLLA----TTGPTLLHAPIA 155 (157)
T ss_pred HHHHHHHCCCceEEcC--CHHHHHHHHHHHHh----CCCCEEEEEEec
Confidence 9999999999999997 89999999999886 479999999873
No 60
>cd02010 TPP_ALS Thiamine pyrophosphate (TPP) family, Acetolactate synthase (ALS) subfamily, TPP-binding module; composed of proteins similar to Klebsiella pneumoniae ALS, a catabolic enzyme required for butanediol fermentation. ALS catalyzes the conversion of 2 molecules of pyruvate to acetolactate and carbon dioxide. ALS does not contain FAD, and requires TPP and a divalent metal cation for activity.
Probab=99.69 E-value=2.1e-16 Score=142.14 Aligned_cols=116 Identities=20% Similarity=0.288 Sum_probs=93.6
Q ss_pred ccccccCccHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcC-Ccceeeec--------
Q 016909 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN-GWAISTPI-------- 211 (380)
Q Consensus 141 ~~g~lG~~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN-~~~i~~~~-------- 211 (380)
..|+||+++|.|+|+++|. +++.|||++|||+|+.. ..+|.+|+++++|+++||.|| +|++....
T Consensus 46 ~~g~mG~~lp~aiGa~la~----~~~~vv~i~GDG~f~m~--~~eL~ta~~~~l~vi~vV~NN~~~g~~~~~~~~~~~~~ 119 (177)
T cd02010 46 GLATMGVALPGAIGAKLVY----PDRKVVAVSGDGGFMMN--SQELETAVRLKIPLVVLIWNDNGYGLIKWKQEKEYGRD 119 (177)
T ss_pred CChhhhhHHHHHHHHHHhC----CCCcEEEEEcchHHHhH--HHHHHHHHHHCCCeEEEEEECCcchHHHHHHHHhcCCc
Confidence 4589999999999999984 67899999999999754 467999999999977766555 57654211
Q ss_pred -ccccCCcCHHHHHhhcCeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeec
Q 016909 212 -SDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 268 (380)
Q Consensus 212 -~~~~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R 268 (380)
.......|+++.+++||+++++|+ +++++.++++++++ .++|+|||+.+.+
T Consensus 120 ~~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~~----~~~p~liev~~~~ 171 (177)
T cd02010 120 SGVDFGNPDFVKYAESFGAKGYRIE--SADDLLPVLERALA----ADGVHVIDCPVDY 171 (177)
T ss_pred ccCcCCCCCHHHHHHHCCCEEEEEC--CHHHHHHHHHHHHh----CCCCEEEEEEecc
Confidence 111134689999999999999998 99999999999876 4899999999854
No 61
>PLN02225 1-deoxy-D-xylulose-5-phosphate synthase
Probab=99.67 E-value=1e-15 Score=161.32 Aligned_cols=223 Identities=10% Similarity=0.044 Sum_probs=162.7
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCcccccccchhHHHHHHHHhcCC-CCcEEEc--cccchHHHHHcC
Q 016909 29 SFVKVSEGVAIKMYNDMVTLQTMDTIFYEA-QRQGRISFYLTTSGEEAINIASAAAIK-NDDFVVP--QYREPGVLLWRG 104 (380)
Q Consensus 29 ~~~~~~~~~l~~~y~~M~~~R~~e~~~~~~-~~~g~i~~~~~~~GqEa~~~~~~~~l~-~~D~v~~--~yR~~~~~l~~G 104 (380)
+.++|+.++|..+-..+ |.+ .+... .+.| |...+++|---..+++-..++ |.|.++. .|....|-+..|
T Consensus 87 dlk~L~~~eL~~La~Ei---R~~--li~~v~s~~G--GHl~snLGvVELTvALH~VFd~p~DkiiwDvgHQ~Y~HKiLTG 159 (701)
T PLN02225 87 QLKNLSVKELKLLADEI---RTE--LHSVLWKKTQ--KSMNPSFAAIELTLALHYVFRAPVDNILWDAVEQTYAHKVLTR 159 (701)
T ss_pred HHhhCCHHHHHHHHHHH---HHH--HHHHhhcccC--CCcCCCccHHHHHHHHHHHhCCCCCceeeccccccchhhHhcC
Confidence 45667777776665543 433 22222 1333 456678887777788888887 7898886 699999999988
Q ss_pred CCHHHHHHHhhcCCCCCCCCCCCccccCCC-CCCcccccccccCccHHHHHHHHHhhhcCCCceeEEEeCccccCcchHH
Q 016909 105 FSMQEFANQCFGNKADYGKGRQMPIHYGSN-KHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFH 183 (380)
Q Consensus 105 ~~~~~~l~e~~g~~~~~~~G~~~~~H~~~~-~~~~~~~~g~lG~~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~ 183 (380)
.. +-|.. +. -.++++.+... +..-....|+-+.+++.|+|+|.|..+++.+..||+++|||++.-|+.+
T Consensus 160 R~--~~f~~-Rq-------~~GlsGf~~r~ES~~D~f~~GHssTSiSaalG~a~ardl~g~~~~vvaVIGDGaltgGma~ 229 (701)
T PLN02225 160 RW--SAIPS-RQ-------KNGISGVTSQLESEYDSFGTGHGCNSISAGLGLAVARDIKGKRDRVVAVIDNATITAGQAY 229 (701)
T ss_pred Ch--hhcCc-cc-------cCCcCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHhcCCCCcEEEEEcCcchhhhhHH
Confidence 63 22331 21 12333333322 2334556899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCEEEEEEcCCcceeee--------ccc--------------------------ccC--CcCH-------
Q 016909 184 AALNFSAVTEAPVIFICRNNGWAISTP--------ISD--------------------------QFR--SDGA------- 220 (380)
Q Consensus 184 Eal~~A~~~~Lpvi~vv~NN~~~i~~~--------~~~--------------------------~~~--~~~~------- 220 (380)
||||-|+..+-|+|+|+++|+.+|+.+ ... ..+ ...+
T Consensus 230 EaLN~~g~~~~~livILNDN~mSi~~n~~~~~~~~vG~ls~~l~~l~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (701)
T PLN02225 230 EAMSNAGYLDSNMIVILNDSRHSLHPNMEEGSKASISALSSIMSKIQSSKIFRKFRELAKAMTKRIGKGMYEWAAKVDEY 309 (701)
T ss_pred HHHhhhhccCCCEEEEEeCCCCCCCCCCCCccCCccchHHHHHHHHhccchHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 999999999999999999999999877 110 000 0000
Q ss_pred --------H-HHHhhcCeeEEE-EeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCC
Q 016909 221 --------V-VKGRAYGVRSIR-VDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVG 270 (380)
Q Consensus 221 --------~-~~a~a~G~~~~~-VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R~~ 270 (380)
. .+++.+|+..+- |||||++++..+++.+.+. ..++|+||.++|-...
T Consensus 310 ~k~~~~~~~~~lFe~lG~~Y~GpvDGHdi~~Li~~l~~~k~~--~~~~PvlvHv~T~KGk 367 (701)
T PLN02225 310 ARGMVGPTGSTLFEELGLYYIGPVDGHNIEDLVCVLREVSSL--DSMGPVLVHVITEENR 367 (701)
T ss_pred hhhccCCCccCcHHHcCCeEECccCCCCHHHHHHHHHHHHcC--CCCCCEEEEEEecCCC
Confidence 1 367889998886 8999999999999988764 1249999999997665
No 62
>cd02005 TPP_PDC_IPDC Thiamine pyrophosphate (TPP) family, PDC_IPDC subfamily, TPP-binding module; composed of proteins similar to pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC). PDC, a key enzyme in alcoholic fermentation, catalyzes the conversion of pyruvate to acetaldehyde and CO2. It is able to utilize other 2-oxo acids as substrates. In plants and various plant-associated bacteria, IPDC plays a role in the indole-3-pyruvic acid (IPA) pathway, a tryptophan-dependent biosynthetic route to indole-3-acetaldehyde (IAA). IPDC catalyzes the decarboxylation of IPA to IAA. Both PDC and IPDC depend on TPP and Mg2+ as cofactors.
Probab=99.66 E-value=8.4e-16 Score=138.96 Aligned_cols=117 Identities=23% Similarity=0.276 Sum_probs=92.9
Q ss_pred ccccccCccHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCC-EEEEEEcCCcceeeeccc------
Q 016909 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAP-VIFICRNNGWAISTPISD------ 213 (380)
Q Consensus 141 ~~g~lG~~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lp-vi~vv~NN~~~i~~~~~~------ 213 (380)
..|+||+++|.|+|+++|. +++.|+|++|||+|+.. ++| |.+|+++++| +++|++||+|++......
T Consensus 48 ~~g~mG~~l~~aiGaala~----~~~~vv~i~GDG~f~~~-~~e-l~ta~~~~~p~~ivV~nN~~~~~~~~~~~~~~~~~ 121 (183)
T cd02005 48 LWGSIGYSVPAALGAALAA----PDRRVILLVGDGSFQMT-VQE-LSTMIRYGLNPIIFLINNDGYTIERAIHGPEASYN 121 (183)
T ss_pred chhhHhhhHHHHHHHHHhC----CCCeEEEEECCchhhcc-HHH-HHHHHHhCCCCEEEEEECCCcEEEEEeccCCcCcc
Confidence 4589999999999999985 56899999999999763 556 8899999997 555666777886542211
Q ss_pred ccCCcCHHHHHhhcC----eeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeec
Q 016909 214 QFRSDGAVVKGRAYG----VRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 268 (380)
Q Consensus 214 ~~~~~~~~~~a~a~G----~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R 268 (380)
.....++.+.|++|| +++.+|+ ++.++.++++++++. .++|+|||+.+.|
T Consensus 122 ~~~~~d~~~ia~a~G~~~~~~~~~v~--~~~el~~al~~a~~~---~~~p~liev~~~~ 175 (183)
T cd02005 122 DIANWNYTKLPEVFGGGGGGLSFRVK--TEGELDEALKDALFN---RDKLSLIEVILPK 175 (183)
T ss_pred cCCCCCHHHHHHHhCCCccccEEEec--CHHHHHHHHHHHHhc---CCCcEEEEEEcCc
Confidence 122468999999999 6888887 899999999988861 4799999999855
No 63
>PRK07524 hypothetical protein; Provisional
Probab=99.64 E-value=1e-15 Score=159.82 Aligned_cols=118 Identities=27% Similarity=0.332 Sum_probs=97.7
Q ss_pred cccccCccHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcC-Ccceee---------ec
Q 016909 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN-GWAIST---------PI 211 (380)
Q Consensus 142 ~g~lG~~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN-~~~i~~---------~~ 211 (380)
.|+||+++|.|+|+++|. ++++|||++|||+|+++ . .+|.+|++++||+++||.|| +|++.. +.
T Consensus 406 ~g~mG~~lp~aiGa~lA~----p~~~vv~i~GDG~f~~~-~-~el~ta~~~~lpi~~vV~NN~~~g~i~~~~~~~~~~~~ 479 (535)
T PRK07524 406 YGTLGYGLPAAIGAALGA----PERPVVCLVGDGGLQFT-L-PELASAVEADLPLIVLLWNNDGYGEIRRYMVARDIEPV 479 (535)
T ss_pred cccccchHHHHHHHHHhC----CCCcEEEEEcchHHhhh-H-HHHHHHHHhCCCeEEEEEECCchHHHHHHHHHhcCCcc
Confidence 589999999999999984 78899999999999754 3 45999999999988877777 676432 11
Q ss_pred ccccCCcCHHHHHhhcCeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCCC
Q 016909 212 SDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGH 271 (380)
Q Consensus 212 ~~~~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R~~g 271 (380)
.......|+.+.|++||+++++|+ +++++.++++++++ .++|+|||++++|+.+
T Consensus 480 ~~~~~~~d~~~~A~a~G~~~~~v~--~~~el~~al~~a~~----~~~p~liev~~~~~~~ 533 (535)
T PRK07524 480 GVDPYTPDFIALARAFGCAAERVA--DLEQLQAALRAAFA----RPGPTLIEVDQACWFA 533 (535)
T ss_pred ccCCCCCCHHHHHHHCCCcEEEeC--CHHHHHHHHHHHHh----CCCCEEEEEECCcccc
Confidence 112235689999999999999998 99999999998875 5899999999999875
No 64
>PF02775 TPP_enzyme_C: Thiamine pyrophosphate enzyme, C-terminal TPP binding domain; InterPro: IPR011766 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the C-terminal TPP binding domain of TPP enzymes.; GO: 0003824 catalytic activity, 0030976 thiamine pyrophosphate binding; PDB: 2WVA_V 1ZPD_F 2WVG_B 2WVH_B 3OE1_D 2NXW_A 2Q5L_B 2Q5Q_B 2Q5J_A 2Q5O_A ....
Probab=99.64 E-value=7.5e-16 Score=134.98 Aligned_cols=114 Identities=28% Similarity=0.394 Sum_probs=92.1
Q ss_pred ccccccCccHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCC-cceeeecc-------
Q 016909 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPIS------- 212 (380)
Q Consensus 141 ~~g~lG~~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~-~~i~~~~~------- 212 (380)
..++||.++|.|+|+++| .++++||+++|||+|... ..+|.+|.++++|+++||.||+ |++.....
T Consensus 26 ~~g~mG~~~~~aiGa~~a----~p~~~vv~i~GDG~f~~~--~~el~ta~~~~~~v~~vv~nN~~~~~~~~~~~~~~~~~ 99 (153)
T PF02775_consen 26 GFGSMGYALPAAIGAALA----RPDRPVVAITGDGSFLMS--LQELATAVRYGLPVVIVVLNNGGYGMTGGQQTPFGGGR 99 (153)
T ss_dssp TTT-TTTHHHHHHHHHHH----STTSEEEEEEEHHHHHHH--GGGHHHHHHTTSSEEEEEEESSBSHHHHHHHHHTTSTC
T ss_pred CccccCCHHHhhhHHHhh----cCcceeEEecCCcceeec--cchhHHHhhccceEEEEEEeCCcceEeccccccCcCcc
Confidence 578999999999999997 478999999999999754 4669999999999777776665 55432211
Q ss_pred ---cc---cCCcCHHHHHhhcCeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEE
Q 016909 213 ---DQ---FRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEA 264 (380)
Q Consensus 213 ---~~---~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~ 264 (380)
.. ....++.+.+++||+++.+|+..|++++.+++++|++ .++|+|||+
T Consensus 100 ~~~~~~~~~~~~d~~~~a~a~G~~~~~v~~~~~~el~~al~~a~~----~~gp~vIeV 153 (153)
T PF02775_consen 100 FSGVDGKTFPNPDFAALAEAFGIKGARVTTPDPEELEEALREALE----SGGPAVIEV 153 (153)
T ss_dssp HHSTBTTTSTTCGHHHHHHHTTSEEEEESCHSHHHHHHHHHHHHH----SSSEEEEEE
T ss_pred cccccccccccCCHHHHHHHcCCcEEEEccCCHHHHHHHHHHHHh----CCCcEEEEc
Confidence 11 4456899999999999999996666999999999985 589999996
No 65
>PRK08327 acetolactate synthase catalytic subunit; Validated
Probab=99.63 E-value=1.7e-15 Score=159.40 Aligned_cols=119 Identities=23% Similarity=0.285 Sum_probs=99.7
Q ss_pred cccccCccHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcC-Ccceeee----------
Q 016909 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN-GWAISTP---------- 210 (380)
Q Consensus 142 ~g~lG~~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN-~~~i~~~---------- 210 (380)
.|+||+++|.|+|+++| .++++|||++|||+|+++...+++++|+++++|+++||.|| +|++...
T Consensus 429 ~gsmG~~lp~aiGa~la----~p~~~vv~i~GDG~f~~~~~e~~l~ta~~~~l~~~ivv~NN~~yg~~~~~~~~~~~~~~ 504 (569)
T PRK08327 429 AGGLGWALGAALGAKLA----TPDRLVIATVGDGSFIFGVPEAAHWVAERYGLPVLVVVFNNGGWLAVKEAVLEVYPEGY 504 (569)
T ss_pred CCCCCcchHHHHHHhhc----CCCCeEEEEecCcceeecCcHHHHHHHHHhCCCEEEEEEeCcccccchhHHhhhCcccc
Confidence 58999999999999887 47899999999999998765567999999999988888777 5765321
Q ss_pred ------c-cccc-CCcCHHHHHhhcCeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEe
Q 016909 211 ------I-SDQF-RSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALT 266 (380)
Q Consensus 211 ------~-~~~~-~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t 266 (380)
. .... +..|+++.+++||+++++|+ +++++..++++|++.+++++||+|||+.+
T Consensus 505 ~~~~~~~~~~~~~~~~d~~~la~a~G~~~~~v~--~~~el~~al~~a~~~~~~~~gp~liev~v 566 (569)
T PRK08327 505 AARKGTFPGTDFDPRPDFAKIAEAFGGYGERVE--DPEELKGALRRALAAVRKGRRSAVLDVIV 566 (569)
T ss_pred cccccccccccCCCCCCHHHHHHhCCCCceEeC--CHHHHHHHHHHHHHHHhcCCCcEEEEEEc
Confidence 0 1111 45689999999999999998 99999999999998777778999999986
No 66
>cd02009 TPP_SHCHC_synthase Thiamine pyrophosphate (TPP) family, SHCHC synthase subfamily, TPP-binding module; composed of proteins similar to Escherichia coli 2-succinyl-6-hydroxyl-2,4-cyclohexadiene-1-carboxylic acid (SHCHC) synthase (also called MenD). SHCHC synthase plays a key role in the menaquinone biosynthetic pathway, converting isochorismate and 2-oxoglutarate to SHCHC, pyruvate and carbon dioxide. The enzyme requires TPP and a divalent metal cation for activity.
Probab=99.63 E-value=1.4e-15 Score=136.41 Aligned_cols=112 Identities=24% Similarity=0.227 Sum_probs=89.7
Q ss_pred cccccCccHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCC-cceeeeccc-------
Q 016909 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPISD------- 213 (380)
Q Consensus 142 ~g~lG~~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~-~~i~~~~~~------- 213 (380)
.+.+|+++|.|+|+++|. +++|||++|||+|+.. ..+|.+|.++++|+++||.||+ |++......
T Consensus 50 ~g~mG~~l~~aiGa~la~-----~~~Vv~i~GDGsf~m~--~~eL~ta~~~~l~v~ivVlNN~~~g~~~~~~~~~~~~~~ 122 (175)
T cd02009 50 ASGIDGTLSTALGIALAT-----DKPTVLLTGDLSFLHD--LNGLLLGKQEPLNLTIVVINNNGGGIFSLLPQASFEDEF 122 (175)
T ss_pred ccchhhHHHHHHHHHhcC-----CCCEEEEEehHHHHHh--HHHHHhccccCCCeEEEEEECCCCchheeccCCcccchh
Confidence 378999999999999984 6789999999999754 4679999999999777666665 664321110
Q ss_pred --cc---CCcCHHHHHhhcCeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEe
Q 016909 214 --QF---RSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALT 266 (380)
Q Consensus 214 --~~---~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t 266 (380)
.. ...|+.+.|++||+++.+|+ +++++.++++++++ .++|+|||+.+
T Consensus 123 ~~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~el~~al~~a~~----~~~p~lIev~v 174 (175)
T cd02009 123 ERLFGTPQGLDFEHLAKAYGLEYRRVS--SLDELEQALESALA----QDGPHVIEVKT 174 (175)
T ss_pred hhhhcCCCCCCHHHHHHHcCCCeeeCC--CHHHHHHHHHHHHh----CCCCEEEEEeC
Confidence 11 24689999999999999998 89999999998875 47999999976
No 67
>TIGR01504 glyox_carbo_lig glyoxylate carboligase. Glyoxylate carboligase, also called tartronate-semialdehyde synthase, releases CO2 while synthesizing a single molecule of tartronate semialdehyde from two molecules of glyoxylate. It is a thiamine pyrophosphate-dependent enzyme, closely related in sequence to the large subunit of acetolactate synthase. In the D-glycerate pathway, part of allantoin degradation in the Enterobacteriaceae, tartronate semialdehyde is converted to D-glycerate and then 3-phosphoglycerate, a product of glycolysis and entry point in the general metabolism.
Probab=99.61 E-value=2e-15 Score=159.36 Aligned_cols=119 Identities=21% Similarity=0.242 Sum_probs=95.4
Q ss_pred cccccCccHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCC-cceeeeccc-------
Q 016909 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPISD------- 213 (380)
Q Consensus 142 ~g~lG~~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~-~~i~~~~~~------- 213 (380)
.|+||+++|.|+|+++|. ++++||+++|||+|++. ..+|.+|.+|+||+++||.||+ |++......
T Consensus 417 ~gsmG~glpaaiGa~lA~----pdr~Vv~i~GDG~f~m~--~~EL~Ta~r~~lpvv~iV~NN~~yg~i~~~q~~~~~~~~ 490 (588)
T TIGR01504 417 AGPLGWTIPAALGVCAAD----PKRNVVALSGDYDFQFM--IEELAVGAQHNIPYIHVLVNNAYLGLIRQAQRAFDMDYC 490 (588)
T ss_pred cccccchHhHHHhhhhhC----CCCcEEEEEcchHhhcc--HHHHHHHHHhCCCeEEEEEeCCchHHHHHHHHHhccccc
Confidence 588999999999999884 68899999999999865 4679999999999777666665 764321100
Q ss_pred ---cc----------CCcCHHHHHhhcCeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeec
Q 016909 214 ---QF----------RSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 268 (380)
Q Consensus 214 ---~~----------~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R 268 (380)
.. ...|+.+.|++||+++.+|+ +++++.+++++|++.+++.++|+|||+.+.+
T Consensus 491 ~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~V~--~~~eL~~al~~a~~~~~~~~~p~lIeV~i~~ 556 (588)
T TIGR01504 491 VQLAFENINSSEVNGYGVDHVKVAEGLGCKAIRVF--KPEEIAPAFEQAKALMAEHRVPVVVEVILER 556 (588)
T ss_pred ceeeccccccccccCCCCCHHHHHHHCCCEEEEEC--CHHHHHHHHHHHHhhcccCCCcEEEEEEecc
Confidence 00 13689999999999999998 9999999999998644345899999999844
No 68
>PRK07092 benzoylformate decarboxylase; Reviewed
Probab=99.60 E-value=6e-15 Score=153.92 Aligned_cols=113 Identities=29% Similarity=0.372 Sum_probs=93.6
Q ss_pred cccccCccHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCC-cceeeec---------
Q 016909 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPI--------- 211 (380)
Q Consensus 142 ~g~lG~~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~-~~i~~~~--------- 211 (380)
.|+||+++|.|+|+++|. ++++|+|++|||+|+++ .++|++|.+++||+++||.||+ |++....
T Consensus 406 ~g~mG~~lp~aiGa~la~----p~~~vv~i~GDG~f~~~--~~eL~ta~~~~lp~~~vv~NN~~~~~~~~~~~~~~~~~~ 479 (530)
T PRK07092 406 SGGLGYGLPAAVGVALAQ----PGRRVIGLIGDGSAMYS--IQALWSAAQLKLPVTFVILNNGRYGALRWFAPVFGVRDV 479 (530)
T ss_pred CCcccchHHHHHHHHHhC----CCCeEEEEEeCchHhhh--HHHHHHHHHhCCCcEEEEEeChHHHHHHHHHHhhCCCCC
Confidence 689999999999999984 57899999999999976 3789999999999888887777 8763211
Q ss_pred -ccccCCcCHHHHHhhcCeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEe
Q 016909 212 -SDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALT 266 (380)
Q Consensus 212 -~~~~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t 266 (380)
.......++.+++++||+++++|+ ++.++.++++++++ .++|+|||+.|
T Consensus 480 ~~~~~~~~d~~~~a~~~G~~~~~v~--~~~~l~~al~~a~~----~~~p~liev~~ 529 (530)
T PRK07092 480 PGLDLPGLDFVALARGYGCEAVRVS--DAAELADALARALA----ADGPVLVEVEV 529 (530)
T ss_pred CCCCCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHh----CCCCEEEEEEc
Confidence 111235689999999999999998 78888888877764 68999999986
No 69
>PRK06154 hypothetical protein; Provisional
Probab=99.60 E-value=6.4e-15 Score=154.83 Aligned_cols=119 Identities=24% Similarity=0.231 Sum_probs=95.4
Q ss_pred ccccccCccHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCC-cceeeeccc------
Q 016909 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPISD------ 213 (380)
Q Consensus 141 ~~g~lG~~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~-~~i~~~~~~------ 213 (380)
..|+||+++|.|+|+++|. +++.|||++|||+|++. ..+|.+|++++||+++||.||+ |++......
T Consensus 429 ~~gsmG~glpaaiGa~la~----p~r~Vv~i~GDG~f~m~--~~EL~Ta~r~~lpi~~vV~NN~~yg~~~~~~~~~~~~~ 502 (565)
T PRK06154 429 KTTQLGYGLGLAMGAKLAR----PDALVINLWGDAAFGMT--GMDFETAVRERIPILTILLNNFSMGGYDKVMPVSTTKY 502 (565)
T ss_pred CCcccccHHHHHHHHHHhC----CCCcEEEEEcchHHhcc--HHHHHHHHHhCCCeEEEEEECCccceeehhhhhhcCcc
Confidence 3589999999999999984 68899999999999864 4679999999999888776665 764322110
Q ss_pred --ccCCcCHHHHHhhcCeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeec
Q 016909 214 --QFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 268 (380)
Q Consensus 214 --~~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R 268 (380)
.....|++++|++||+++.+|+ +++++.+++++|+++.+ .++|+|||+.+.+
T Consensus 503 ~~~~~~~df~~lA~a~G~~g~~V~--~~~el~~al~~a~~~~~-~~~p~lIev~v~~ 556 (565)
T PRK06154 503 RATDISGDYAAIARALGGYGERVE--DPEMLVPALLRALRKVK-EGTPALLEVITSE 556 (565)
T ss_pred cccCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHhhcc-CCCeEEEEEEeCh
Confidence 1113589999999999999999 99999999999986432 3689999999844
No 70
>PRK08266 hypothetical protein; Provisional
Probab=99.59 E-value=9.4e-15 Score=152.81 Aligned_cols=118 Identities=27% Similarity=0.345 Sum_probs=96.1
Q ss_pred cccccCccHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcC-Ccceeeecc--------
Q 016909 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN-GWAISTPIS-------- 212 (380)
Q Consensus 142 ~g~lG~~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN-~~~i~~~~~-------- 212 (380)
.|+||+++|.|+|++++ .+++.|||++|||+|+++ .++|.+|.+++||+++||.|| +|++.....
T Consensus 401 ~GsmG~~lp~aiGa~la----~p~~~vv~v~GDG~f~~~--~~eL~ta~~~~lpv~ivv~NN~~y~~~~~~~~~~~~~~~ 474 (542)
T PRK08266 401 QGTLGYGFPTALGAKVA----NPDRPVVSITGDGGFMFG--VQELATAVQHNIGVVTVVFNNNAYGNVRRDQKRRFGGRV 474 (542)
T ss_pred CcccccHHHHHHHHHHh----CCCCcEEEEEcchhhhcc--HHHHHHHHHhCCCeEEEEEeCCcchHHHHHHHHhcCCCc
Confidence 58999999999999887 468899999999999976 477999999999988877766 587532111
Q ss_pred --cccCCcCHHHHHhhcCeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCCC
Q 016909 213 --DQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGH 271 (380)
Q Consensus 213 --~~~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R~~g 271 (380)
......|+.++|++||+++.+|+ +++++.++++++++ .++|+|||+.|+|...
T Consensus 475 ~~~~~~~~d~~~la~a~G~~~~~v~--~~~el~~al~~a~~----~~~p~liev~i~~~~~ 529 (542)
T PRK08266 475 VASDLVNPDFVKLAESFGVAAFRVD--SPEELRAALEAALA----HGGPVLIEVPVPRGSE 529 (542)
T ss_pred ccCCCCCCCHHHHHHHcCCeEEEeC--CHHHHHHHHHHHHh----CCCcEEEEEEecCCCC
Confidence 01124689999999999999998 78899888888875 5789999999987654
No 71
>PRK12474 hypothetical protein; Provisional
Probab=99.59 E-value=5.2e-15 Score=154.01 Aligned_cols=113 Identities=28% Similarity=0.232 Sum_probs=91.7
Q ss_pred cccccCccHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCC-cceeeec---------
Q 016909 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPI--------- 211 (380)
Q Consensus 142 ~g~lG~~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~-~~i~~~~--------- 211 (380)
.|+||+++|.|+|+++|. +++.|||++|||+|++. ..+|.+|.+++||+++||.||+ |++....
T Consensus 388 ~gsmG~glpaAiGa~lA~----p~r~vv~i~GDG~f~m~--~qEL~Ta~r~~lpv~iiV~NN~~y~~i~~~~~~~~~~~~ 461 (518)
T PRK12474 388 GGSIGQGLPLAAGAAVAA----PDRKVVCPQGDGGAAYT--MQALWTMARENLDVTVVIFANRSYAILNGELQRVGAQGA 461 (518)
T ss_pred CCccCccHHHHHHHHHHC----CCCcEEEEEcCchhcch--HHHHHHHHHHCCCcEEEEEcCCcchHHHHHHHhhcCCCC
Confidence 599999999999999984 68899999999999864 4679999999998777776665 7653210
Q ss_pred c------c--ccCCcCHHHHHhhcCeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEe
Q 016909 212 S------D--QFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALT 266 (380)
Q Consensus 212 ~------~--~~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t 266 (380)
. . ..+..|++++|++||+++.+|+ +++++.+++++|++ .++|+|||+.+
T Consensus 462 ~~~~~~~~~~~~~~~d~~~lA~a~G~~~~rv~--~~~eL~~al~~a~~----~~~p~liev~~ 518 (518)
T PRK12474 462 GRNALSMLDLHNPELNWMKIAEGLGVEASRAT--TAEEFSAQYAAAMA----QRGPRLIEAMI 518 (518)
T ss_pred CccccccccCCCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHc----CCCCEEEEEEC
Confidence 0 0 0112589999999999999999 89999999999875 47999999964
No 72
>COG0028 IlvB Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=99.59 E-value=6.6e-15 Score=153.64 Aligned_cols=118 Identities=27% Similarity=0.365 Sum_probs=96.8
Q ss_pred cccccccCccHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCC-cceeeecccccC--
Q 016909 140 TVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPISDQFR-- 216 (380)
Q Consensus 140 ~~~g~lG~~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~-~~i~~~~~~~~~-- 216 (380)
+..|+||.++|.|+|+++|. +++.|||++|||+|++. .++|.+|.+|++|+++||.||+ |++.........
T Consensus 405 ~~~GtMG~glPaAIGAkla~----P~r~Vv~i~GDG~F~m~--~qEL~Ta~r~~lpv~ivv~nN~~~g~v~~~q~~~~~~ 478 (550)
T COG0028 405 GGLGTMGFGLPAAIGAKLAA----PDRKVVAIAGDGGFMMN--GQELETAVRYGLPVKIVVLNNGGYGMVRQWQELFYGG 478 (550)
T ss_pred CCCccccchHHHHHHHHhhC----CCCcEEEEEcccHHhcc--HHHHHHHHHhCCCEEEEEEECCccccchHHHHHhcCC
Confidence 45689999999999998884 68999999999999854 5779999999999999888887 555432221111
Q ss_pred -------CcC-HHHHHhhcCeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecC
Q 016909 217 -------SDG-AVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRV 269 (380)
Q Consensus 217 -------~~~-~~~~a~a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R~ 269 (380)
... +.+.|++||+++++|+ +++++.+++++|++ .++|+||++.+.+-
T Consensus 479 ~~~~~~~~~~~f~klAea~G~~g~~v~--~~~el~~al~~al~----~~~p~lidv~id~~ 533 (550)
T COG0028 479 RYSGTDLGNPDFVKLAEAYGAKGIRVE--TPEELEEALEEALA----SDGPVLIDVVVDPE 533 (550)
T ss_pred CcceeecCCccHHHHHHHcCCeeEEeC--CHHHHHHHHHHHHh----CCCCEEEEEEecCc
Confidence 122 9999999999999999 99999999999987 58999999999765
No 73
>cd03375 TPP_OGFOR Thiamine pyrophosphate (TPP family), 2-oxoglutarate ferredoxin oxidoreductase (OGFOR) subfamily, TPP-binding module; OGFOR catalyzes the oxidative decarboxylation of 2-oxo-acids, with ferredoxin acting as an electron acceptor. In the TCA cycle, OGFOR catalyzes the oxidative decarboxylation of 2-oxoglutarate to succinyl-CoA. In the reductive tricarboxylic acid cycle found in the anaerobic autotroph Hydrogenobacter thermophilus, OGFOR catalyzes the reductive carboxylation of succinyl-CoA to produce 2-oxoglutarate. Thauera aromatica OGFOR has been shown to provide reduced ferredoxin to benzoyl-CoA reductase, a key enzyme in the anaerobic metabolism of aromatic compounds. OGFOR is dependent on TPP and a divalent metal cation for activity.
Probab=99.58 E-value=1.1e-14 Score=132.83 Aligned_cols=116 Identities=17% Similarity=0.164 Sum_probs=89.2
Q ss_pred cccccCccHHHHHHHHHhhhcCCCceeEEEeCcccc-CcchHHHHHHHHHHcCCCEEEEEEcCC-cceeeeccc-c----
Q 016909 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGT-SEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPISD-Q---- 214 (380)
Q Consensus 142 ~g~lG~~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~-~eG~~~Eal~~A~~~~Lpvi~vv~NN~-~~i~~~~~~-~---- 214 (380)
.++||.++|.|+|+++|. ++++||++.|||++ +.+ ..+|.+|.++++|+++||.||+ |++...... .
T Consensus 50 ~g~mG~glpaAiGa~la~----p~r~Vv~i~GDGs~f~m~--~~eL~ta~~~~lpv~iiVlnN~~yg~~~~~~~~~~~~~ 123 (193)
T cd03375 50 HTLHGRALAVATGVKLAN----PDLTVIVVSGDGDLAAIG--GNHFIHAARRNIDITVIVHNNQIYGLTKGQASPTTPEG 123 (193)
T ss_pred hhhhccHHHHHHHHHHhC----CCCeEEEEeccchHhhcc--HHHHHHHHHhCCCeEEEEEcCcccccCCCccCCCCCCC
Confidence 378999999999999884 78999999999994 543 4669999999999887776665 665432110 0
Q ss_pred -----------cCCcCHHHHHhhcCeeEE-EEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEee
Q 016909 215 -----------FRSDGAVVKGRAYGVRSI-RVDGNDALAIYSAVHAAREMAIGEGRPILIEALTY 267 (380)
Q Consensus 215 -----------~~~~~~~~~a~a~G~~~~-~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~ 267 (380)
....|+.+.+++||++++ ++.-.++.++.+++++|++ .++|++||+.+.
T Consensus 124 ~~~~~~~~~~~~~~~d~~~iA~a~G~~~~~~~~v~~~~el~~al~~al~----~~gp~vIev~~~ 184 (193)
T cd03375 124 FKTKTTPYGNIEEPFNPLALALAAGATFVARGFSGDIKQLKEIIKKAIQ----HKGFSFVEVLSP 184 (193)
T ss_pred CcccCCCCCCCCCCCCHHHHHHHCCCCEEEEEecCCHHHHHHHHHHHHh----cCCCEEEEEECC
Confidence 113589999999999985 2233489999999999986 489999999864
No 74
>PRK06725 acetolactate synthase 3 catalytic subunit; Validated
Probab=99.58 E-value=7.8e-15 Score=154.35 Aligned_cols=115 Identities=20% Similarity=0.258 Sum_probs=93.4
Q ss_pred cccccCccHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCC-cceeeecc--------
Q 016909 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPIS-------- 212 (380)
Q Consensus 142 ~g~lG~~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~-~~i~~~~~-------- 212 (380)
.|+||+++|.|+|+++|. ++++|||++|||+|+.. ..+|.+|.+++||+++||.||+ |++.....
T Consensus 421 ~gsmG~~lp~aiGa~lA~----p~~~vv~i~GDG~f~~~--~~el~Ta~~~~lpi~~vV~NN~~~~~~~~~q~~~~~~~~ 494 (570)
T PRK06725 421 LGTMGFGFPAAIGAQLAK----EEELVICIAGDASFQMN--IQELQTIAENNIPVKVFIINNKFLGMVRQWQEMFYENRL 494 (570)
T ss_pred cccccchhhHHHhhHhhc----CCCeEEEEEecchhhcc--HHHHHHHHHhCCCeEEEEEECCccHHHHHHHHHhcCCcc
Confidence 489999999999999884 67899999999999754 3559999999999888888776 55432110
Q ss_pred --cccCCcCHHHHHhhcCeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeec
Q 016909 213 --DQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 268 (380)
Q Consensus 213 --~~~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R 268 (380)
......|+++++++||+++.+|+ +++++.++++.+++ .++|+|||+.+.+
T Consensus 495 ~~~~~~~~d~~~~a~a~G~~~~~v~--~~~~l~~al~~a~~----~~~p~liev~id~ 546 (570)
T PRK06725 495 SESKIGSPDFVKVAEAYGVKGLRAT--NSTEAKQVMLEAFA----HEGPVVVDFCVEE 546 (570)
T ss_pred ccCcCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHh----CCCCEEEEEEeCC
Confidence 11234689999999999999997 99999888888875 5899999999854
No 75
>PRK06546 pyruvate dehydrogenase; Provisional
Probab=99.58 E-value=1.5e-14 Score=152.36 Aligned_cols=116 Identities=25% Similarity=0.328 Sum_probs=94.6
Q ss_pred ccccccCccHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCC-cceee--------ec
Q 016909 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAIST--------PI 211 (380)
Q Consensus 141 ~~g~lG~~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~-~~i~~--------~~ 211 (380)
..|+||+++|.|+|+++|. +++.|||++|||+|+.+ ..+|.+|++++||+++||.||+ |++.. +.
T Consensus 406 ~~gsmG~~~paAiGa~la~----p~~~vv~i~GDGsf~~~--~~el~Ta~~~~lpv~~vV~NN~~~g~i~~~q~~~~~~~ 479 (578)
T PRK06546 406 RHGSMANALPHAIGAQLAD----PGRQVISMSGDGGLSML--LGELLTVKLYDLPVKVVVFNNSTLGMVKLEMLVDGLPD 479 (578)
T ss_pred CcccccchhHHHHHHHHhC----CCCcEEEEEcCchHhhh--HHHHHHHHHhCCCeEEEEEECCccccHHHHHHhcCCCc
Confidence 3589999999999999984 67899999999999864 3569999999999888777776 55431 10
Q ss_pred c-cccCCcCHHHHHhhcCeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeec
Q 016909 212 S-DQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 268 (380)
Q Consensus 212 ~-~~~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R 268 (380)
. ......|++++|++||+++.+|+ +++++.++++++++ .++|+|||+.+-+
T Consensus 480 ~~~~~~~~df~~lA~a~G~~~~~v~--~~~el~~al~~a~~----~~gp~lIev~~~~ 531 (578)
T PRK06546 480 FGTDHPPVDYAAIAAALGIHAVRVE--DPKDVRGALREAFA----HPGPALVDVVTDP 531 (578)
T ss_pred ccccCCCCCHHHHHHHCCCeeEEeC--CHHHHHHHHHHHHh----CCCCEEEEEEeCC
Confidence 0 11235689999999999999998 99999999998876 5899999999854
No 76
>PRK09107 acetolactate synthase 3 catalytic subunit; Validated
Probab=99.57 E-value=1e-14 Score=154.12 Aligned_cols=115 Identities=20% Similarity=0.243 Sum_probs=93.9
Q ss_pred cccccCccHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCC-cceeeec---------
Q 016909 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPI--------- 211 (380)
Q Consensus 142 ~g~lG~~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~-~~i~~~~--------- 211 (380)
.|+||+++|.|+|+++|. +++.||+++|||+|+.. ..+|.+|++|+||+++||.||+ |++....
T Consensus 429 ~gsmG~glpaaiGa~lA~----p~r~Vv~i~GDG~f~m~--~~EL~Ta~r~~lpvi~vV~NN~~y~~i~~~q~~~~~~~~ 502 (595)
T PRK09107 429 LGTMGYGLPAALGVQIAH----PDALVIDIAGDASIQMC--IQEMSTAVQYNLPVKIFILNNQYMGMVRQWQQLLHGNRL 502 (595)
T ss_pred chhhhhhHHHHHHHHHhC----CCCeEEEEEcCchhhcc--HHHHHHHHHhCCCeEEEEEeCCccHHHHHHHHHHhCCcc
Confidence 489999999999999984 78899999999999864 3669999999999888777776 6543210
Q ss_pred ccc--cCCcCHHHHHhhcCeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeec
Q 016909 212 SDQ--FRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 268 (380)
Q Consensus 212 ~~~--~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R 268 (380)
... ....|+++.|++||+++.+|+ +++++.+++++|.+ .++|+|||+.+.+
T Consensus 503 ~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~el~~al~~a~~----~~~p~lIeV~i~~ 555 (595)
T PRK09107 503 SHSYTEAMPDFVKLAEAYGAVGIRCE--KPGDLDDAIQEMID----VDKPVIFDCRVAN 555 (595)
T ss_pred ccccCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHh----CCCCEEEEEEecC
Confidence 111 123689999999999999998 99999999999886 4799999999965
No 77
>cd03376 TPP_PFOR_porB_like Thiamine pyrophosphate (TPP family), PFOR porB-like subfamily, TPP-binding module; composed of proteins similar to the beta subunit (porB) of the Helicobacter pylori four-subunit pyruvate ferredoxin oxidoreductase (PFOR), which are also found in archaea and some hyperthermophilic bacteria. PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. The 36-kDa porB subunit contains the binding sites for the cofactors, TPP and a divalent metal cation, which are required for activity.
Probab=99.57 E-value=1.4e-14 Score=136.04 Aligned_cols=122 Identities=21% Similarity=0.247 Sum_probs=93.4
Q ss_pred ccccccccCccHHHHHHHHHhhhcCCCceeEEEeCcccc-CcchHHHHHHHHHHcCCCEEEEEEcCC-cceeeeccc---
Q 016909 139 FTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGT-SEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPISD--- 213 (380)
Q Consensus 139 ~~~~g~lG~~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~-~eG~~~Eal~~A~~~~Lpvi~vv~NN~-~~i~~~~~~--- 213 (380)
+...++||.++|.|+|++++ .++++|||+.|||++ +.| .++|.+|+++++|+++||.||+ |++......
T Consensus 58 ~~~~gsmG~GlpaAiGa~~a----~p~r~VV~i~GDG~~~~m~--~~eL~ta~~~~~pv~~vVlNN~~yg~tg~q~~~~~ 131 (235)
T cd03376 58 FENAAAVASGIEAALKALGR----GKDITVVAFAGDGGTADIG--FQALSGAAERGHDILYICYDNEAYMNTGIQRSGST 131 (235)
T ss_pred hcCHHHHHHHHHHHHHHhcc----CCCCeEEEEEcCchHHhhH--HHHHHHHHHcCCCeEEEEECCcccccCCCCCCCCC
Confidence 33457999999999998655 478899999999995 554 4669999999999998888886 553111000
Q ss_pred ------------------ccCCcCHHHHHhhcCeeEEE-EeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCC
Q 016909 214 ------------------QFRSDGAVVKGRAYGVRSIR-VDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVG 270 (380)
Q Consensus 214 ------------------~~~~~~~~~~a~a~G~~~~~-VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R~~ 270 (380)
.....|+.++|+++|++++. +...+++++.+++++|++ .++|+|||+.+--.-
T Consensus 132 ~~~~~~~~~~~g~~~~~~~~~~~d~~~iA~a~G~~~~~~~~v~~~~el~~al~~a~~----~~gP~lIev~~~C~~ 203 (235)
T cd03376 132 PYGAWTTTTPVGKVSFGKKQPKKDLPLIMAAHNIPYVATASVAYPEDLYKKVKKALS----IEGPAYIHILSPCPT 203 (235)
T ss_pred CCCCEeecCCCCccccccccccCCHHHHHHHcCCcEEEEEcCCCHHHHHHHHHHHHh----CCCCEEEEEECCCCC
Confidence 11336899999999999874 555699999999999886 479999999874433
No 78
>PRK11269 glyoxylate carboligase; Provisional
Probab=99.57 E-value=7e-15 Score=155.34 Aligned_cols=120 Identities=23% Similarity=0.215 Sum_probs=96.4
Q ss_pred ccccccCccHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCC-cceeeecc-----c-
Q 016909 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPIS-----D- 213 (380)
Q Consensus 141 ~~g~lG~~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~-~~i~~~~~-----~- 213 (380)
..|+||+++|.|+|+++|. +++.|||++|||+|+.. ..+|.+|.+++||+++||.||+ |++..... .
T Consensus 417 ~~G~mG~glpaAiGa~la~----p~r~Vv~i~GDG~f~m~--~~eL~Ta~~~~lpv~~vV~NN~~~g~i~~~~~~~~~~~ 490 (591)
T PRK11269 417 QAGPLGWTIPAALGVRAAD----PDRNVVALSGDYDFQFL--IEELAVGAQFNLPYIHVLVNNAYLGLIRQAQRAFDMDY 490 (591)
T ss_pred ccccccchhhhHHhhhhhC----CCCcEEEEEccchhhcC--HHHHHHHHHhCCCeEEEEEeCCchhHHHHHHHHhccCc
Confidence 3589999999999999884 67899999999999864 3569999999999888887776 65432110 0
Q ss_pred --c------------cCCcCHHHHHhhcCeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeec
Q 016909 214 --Q------------FRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 268 (380)
Q Consensus 214 --~------------~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R 268 (380)
. ....|+++.|++||+++.+|. +++++..++++|++.+.+.++|+|||+.+.+
T Consensus 491 ~~~~~~~~~~~~~~~~~~~df~~lA~a~G~~~~~v~--~~~eL~~al~~a~~~~~~~~gp~lieV~v~~ 557 (591)
T PRK11269 491 CVQLAFENINSPELNGYGVDHVKVAEGLGCKAIRVF--KPEDIAPALEQAKALMAEFRVPVVVEVILER 557 (591)
T ss_pred cceeeccccccccccCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHhhcccCCCcEEEEEEecc
Confidence 0 023689999999999999998 9999999999998644446899999999854
No 79
>PRK07586 hypothetical protein; Validated
Probab=99.57 E-value=1.4e-14 Score=150.69 Aligned_cols=113 Identities=31% Similarity=0.257 Sum_probs=90.5
Q ss_pred cccccCccHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcC-Ccceeeec---------
Q 016909 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN-GWAISTPI--------- 211 (380)
Q Consensus 142 ~g~lG~~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN-~~~i~~~~--------- 211 (380)
.|+||+++|.|+|+++|. +++.|||++|||+|++. ..+|.+|.+++||+++||.|| +|++....
T Consensus 384 ~g~mG~~lpaaiGa~lA~----p~r~Vv~i~GDGsf~m~--~~EL~Ta~~~~lpv~ivV~NN~~y~~~~~~~~~~~~~~~ 457 (514)
T PRK07586 384 GGAIGQGLPLATGAAVAC----PDRKVLALQGDGSAMYT--IQALWTQARENLDVTTVIFANRAYAILRGELARVGAGNP 457 (514)
T ss_pred CcccccHHHHHHHHHHhC----CCCeEEEEEechHHHhH--HHHHHHHHHcCCCCEEEEEeCchhHHHHHHHHHhcCCCC
Confidence 489999999999999984 68899999999999854 577999999999976666555 57753210
Q ss_pred -c------c-ccCCcCHHHHHhhcCeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEe
Q 016909 212 -S------D-QFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALT 266 (380)
Q Consensus 212 -~------~-~~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t 266 (380)
. . ..+..|+.+.|++||+++.+|+ ++.++.+++++|++ .++|+|||+.+
T Consensus 458 ~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~V~--~~~el~~al~~a~~----~~~p~liev~~ 514 (514)
T PRK07586 458 GPRALDMLDLDDPDLDWVALAEGMGVPARRVT--TAEEFADALAAALA----EPGPHLIEAVV 514 (514)
T ss_pred CccccccccCCCCCCCHHHHHHHCCCcEEEeC--CHHHHHHHHHHHHc----CCCCEEEEEEC
Confidence 0 0 1123689999999999999998 89999999988875 47999999964
No 80
>PRK05858 hypothetical protein; Provisional
Probab=99.56 E-value=1.4e-14 Score=151.55 Aligned_cols=115 Identities=22% Similarity=0.153 Sum_probs=93.7
Q ss_pred cccccCccHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcC-Ccceeeecc--------
Q 016909 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN-GWAISTPIS-------- 212 (380)
Q Consensus 142 ~g~lG~~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN-~~~i~~~~~-------- 212 (380)
.|+||+++|.|+|+++|. +++.|||++|||+|++. ..+|.+|.+++||+++||.|| .|++.....
T Consensus 406 ~gsmG~~lp~aiGa~la~----p~r~vv~i~GDG~f~~~--~~eL~Ta~~~~lpi~ivV~NN~~y~~~~~~~~~~~~~~~ 479 (542)
T PRK05858 406 FGCLGTGPGYALAARLAR----PSRQVVLLQGDGAFGFS--LMDVDTLVRHNLPVVSVIGNNGIWGLEKHPMEALYGYDV 479 (542)
T ss_pred ccccccchhHHHHHHHhC----CCCcEEEEEcCchhcCc--HHHHHHHHHcCCCEEEEEEeCCchhhHHHHHHHhcCCcc
Confidence 589999999999999884 68899999999999864 356999999999977777666 465432110
Q ss_pred --cccCCcCHHHHHhhcCeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeec
Q 016909 213 --DQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 268 (380)
Q Consensus 213 --~~~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R 268 (380)
......|+.+.|++||+++.+|+ +++++.+++++|++ .++|+|||+.|.+
T Consensus 480 ~~~~~~~~d~~~lA~a~G~~~~~v~--~~~eL~~al~~a~~----~~~p~lIev~~~~ 531 (542)
T PRK05858 480 AADLRPGTRYDEVVRALGGHGELVT--VPAELGPALERAFA----SGVPYLVNVLTDP 531 (542)
T ss_pred ccccCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHh----CCCcEEEEEEECC
Confidence 11135789999999999999999 99999999999886 5799999999944
No 81
>PRK06882 acetolactate synthase 3 catalytic subunit; Validated
Probab=99.56 E-value=2.5e-14 Score=150.69 Aligned_cols=117 Identities=20% Similarity=0.266 Sum_probs=94.5
Q ss_pred ccccccCccHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCC-cceee---------e
Q 016909 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAIST---------P 210 (380)
Q Consensus 141 ~~g~lG~~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~-~~i~~---------~ 210 (380)
..|++|+++|.|+|+++|. ++++|||++|||+|++. .++|.+|.+++||+++||.||+ |++.. .
T Consensus 419 ~~g~mG~~lp~aiGa~la~----p~~~vv~i~GDG~f~~~--~~eL~ta~~~~lpv~~vV~NN~~~~~i~~~q~~~~~~~ 492 (574)
T PRK06882 419 GAGTMGFGLPAAIGVKFAH----PEATVVCVTGDGSIQMN--IQELSTAKQYDIPVVIVSLNNRFLGMVKQWQDLIYSGR 492 (574)
T ss_pred CcccccchhHHHHHHHhhc----CCCcEEEEEcchhhhcc--HHHHHHHHHhCCCeEEEEEECchhHHHHHHHHHhcCCc
Confidence 3588999999999999984 57899999999999865 4779999999999888887776 44321 0
Q ss_pred cccc--cCCcCHHHHHhhcCeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeec
Q 016909 211 ISDQ--FRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 268 (380)
Q Consensus 211 ~~~~--~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R 268 (380)
.... ....++.++|++||+++++|+ +.+++..+++++++. .++|+|||+.+.+
T Consensus 493 ~~~~~~~~~~d~~~la~a~G~~~~~v~--~~~eL~~al~~a~~~---~~~p~liev~i~~ 547 (574)
T PRK06882 493 HSQVYMNSLPDFAKLAEAYGHVGIQID--TPDELEEKLTQAFSI---KDKLVFVDVNVDE 547 (574)
T ss_pred ccccCCCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHhc---CCCcEEEEEEecC
Confidence 0111 124689999999999999998 899999999988863 3789999999965
No 82
>PRK07064 hypothetical protein; Provisional
Probab=99.56 E-value=1.9e-14 Score=150.52 Aligned_cols=114 Identities=22% Similarity=0.289 Sum_probs=92.5
Q ss_pred cccccCccHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcC-Ccceeeec---------
Q 016909 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN-GWAISTPI--------- 211 (380)
Q Consensus 142 ~g~lG~~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN-~~~i~~~~--------- 211 (380)
.|+||+++|.|+|+++|. +++.||+++|||+|+.. ..+|.+|.+++||+++||.|| +|++....
T Consensus 404 ~g~mG~~lpaAiGa~lA~----p~~~vv~i~GDGsf~m~--~~eL~Ta~~~~lpv~ivV~NN~~yg~~~~~~~~~~~~~~ 477 (544)
T PRK07064 404 GGGIGQGLAMAIGAALAG----PGRKTVGLVGDGGLMLN--LGELATAVQENANMVIVLMNDGGYGVIRNIQDAQYGGRR 477 (544)
T ss_pred CCccccccchhhhhhhhC----cCCcEEEEEcchHhhhh--HHHHHHHHHhCCCeEEEEEeCChhHHHHHHHHHhcCCcc
Confidence 478999999999999984 67899999999999864 367999999999977766555 47653211
Q ss_pred -ccccCCcCHHHHHhhcCeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEee
Q 016909 212 -SDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTY 267 (380)
Q Consensus 212 -~~~~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~ 267 (380)
.......|+.+.|++||+++.+|+ +++++.+++++|++ .++|+|||+.+.
T Consensus 478 ~~~~~~~~d~~~lA~a~G~~~~~v~--~~~eL~~al~~a~~----~~~p~lIeV~~~ 528 (544)
T PRK07064 478 YYVELHTPDFALLAASLGLPHWRVT--SADDFEAVLREALA----KEGPVLVEVDML 528 (544)
T ss_pred ccccCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHc----CCCCEEEEEEcc
Confidence 111234689999999999999998 89999999998875 479999999985
No 83
>PRK07979 acetolactate synthase 3 catalytic subunit; Validated
Probab=99.56 E-value=2.6e-14 Score=150.55 Aligned_cols=119 Identities=23% Similarity=0.250 Sum_probs=95.4
Q ss_pred ccccccCccHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCC-cceeeec--------
Q 016909 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPI-------- 211 (380)
Q Consensus 141 ~~g~lG~~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~-~~i~~~~-------- 211 (380)
..|+||+++|.|+|+++|. +++.|||++|||+|++. ..+|.+|.+++||+++||.||+ |++....
T Consensus 419 ~~g~mG~glpaaiGa~la~----p~~~vv~i~GDG~f~m~--~~eL~Ta~r~~l~v~ivV~NN~~yg~i~~~q~~~~~~~ 492 (574)
T PRK07979 419 GLGTMGFGLPAALGVKMAL----PEETVVCVTGDGSIQMN--IQELSTALQYELPVLVLNLNNRYLGMVKQWQDMIYSGR 492 (574)
T ss_pred CccchhhHHHHHHHHHHhC----CCCeEEEEEcchhhhcc--HHHHHHHHHhCCCeEEEEEeCchhhHHHHHHHHhcCCc
Confidence 3489999999999999984 67899999999999854 4679999999999888777665 5542210
Q ss_pred -ccc--cCCcCHHHHHhhcCeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeec
Q 016909 212 -SDQ--FRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 268 (380)
Q Consensus 212 -~~~--~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R 268 (380)
... ....|+.+.|++||+++.+|+ +++++.+++++|++.++ .++|+|||+.+.+
T Consensus 493 ~~~~~~~~~~d~~~iA~a~G~~g~~v~--~~~eL~~al~~a~~~~~-~~~p~lIeV~i~~ 549 (574)
T PRK07979 493 HSQSYMQSLPDFVRLAEAYGHVGIQIS--HPDELESKLSEALEQVR-NNRLVFVDVTVDG 549 (574)
T ss_pred cccccCCCCCCHHHHHHHCCCEEEEEC--CHHHHHHHHHHHHhccC-CCCcEEEEEEECC
Confidence 111 124689999999999999998 99999999999987543 3789999999954
No 84
>TIGR03297 Ppyr-DeCO2ase phosphonopyruvate decarboxylase. This family consists of examples of phosphonopyruvate an decarboxylase enzyme that produces phosphonoacetaldehyde (Pald), the second step in the biosynthesis phosphonate-containing compounds. Since the preceding enzymate step, PEP phosphomutase (AepX, TIGR02320) favors the substrate PEP energetically, the decarboxylase is required to drive the reaction in the direction of phosphonate production. Pald is a precursor of natural products including antibiotics like bialaphos and phosphonothricin in Streptomyces species, phosphonate-modified molecules such as the polysaccharide B of Bacteroides fragilis, the phosphonolipids of Tetrahymena pyroformis, the glycosylinositolphospholipids of Trypanosoma cruzi. This gene generally occurs in prokaryotic organisms adjacent to the gene for AepX. Most often an aminotansferase (aepZ) is also present which leads to the production of the most common phosphonate compound, 2-aminoethylphosphonate (A
Probab=99.56 E-value=6.2e-14 Score=139.20 Aligned_cols=118 Identities=20% Similarity=0.148 Sum_probs=93.2
Q ss_pred ccccccCccHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCC-CEEEEEEcCC-cceeeecccccCCc
Q 016909 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEA-PVIFICRNNG-WAISTPISDQFRSD 218 (380)
Q Consensus 141 ~~g~lG~~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~L-pvi~vv~NN~-~~i~~~~~~~~~~~ 218 (380)
+.|+||+++|+|+|+|+|. +++.|||+.|||++.+. ..+|.+++++++ |+++||.||+ |+............
T Consensus 219 ~~GsMG~a~p~AlG~ala~----p~r~Vv~i~GDGsflm~--~~eL~t~~~~~~~nli~VVlNNg~~~~~g~q~~~~~~~ 292 (361)
T TIGR03297 219 TVGSMGHASQIALGLALAR----PDQRVVCLDGDGAALMH--MGGLATIGTQGPANLIHVLFNNGAHDSVGGQPTVSQHL 292 (361)
T ss_pred eechhhhHHHHHHHHHHHC----CCCCEEEEEChHHHHHH--HHHHHHHHHhCCCCeEEEEEcCccccccCCcCCCCCCC
Confidence 3599999999999999984 57899999999999643 457899999997 8888777776 55433222222357
Q ss_pred CHHHHHhhcCe-eEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCC
Q 016909 219 GAVVKGRAYGV-RSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVG 270 (380)
Q Consensus 219 ~~~~~a~a~G~-~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R~~ 270 (380)
|+.+.|++||+ .+++|+ +.+++.++++++.+ .++|+|||+++-...
T Consensus 293 d~~~iA~a~G~~~~~~v~--~~~eL~~al~~a~~----~~gp~lIeV~v~~g~ 339 (361)
T TIGR03297 293 DFAQIAKACGYAKVYEVS--TLEELETALTAASS----ANGPRLIEVKVRPGS 339 (361)
T ss_pred CHHHHHHHCCCceEEEeC--CHHHHHHHHHHHHh----CCCcEEEEEEecCCC
Confidence 89999999997 567775 99999999998864 479999999985543
No 85
>TIGR02418 acolac_catab acetolactate synthase, catabolic. Acetolactate synthase (EC 2.2.1.6) combines two molecules of pyruvate to yield 2-acetolactate with the release of CO2. This reaction may be involved in either valine biosynthesis (biosynthetic) or conversion of pyruvate to acetoin and possibly to 2,3-butanediol (catabolic). The biosynthetic type, described by TIGR00118, is also capable of forming acetohydroxybutyrate from pyruvate and 2-oxobutyrate for isoleucine biosynthesis. The family described here, part of the same larger family of thiamine pyrophosphate-dependent enzymes (pfam00205, pfam02776) is the catabolic form, generally found associated with in species with acetolactate decarboxylase and usually found in the same operon. The model may not encompass all catabolic acetolactate synthases, but rather one particular clade in the larger TPP-dependent enzyme family.
Probab=99.55 E-value=2.1e-14 Score=150.09 Aligned_cols=117 Identities=21% Similarity=0.289 Sum_probs=94.0
Q ss_pred ccccccCccHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcC-Ccceeeec-----c--
Q 016909 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN-GWAISTPI-----S-- 212 (380)
Q Consensus 141 ~~g~lG~~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN-~~~i~~~~-----~-- 212 (380)
..|+||+++|.|+|+++|. +++.||+++|||+|++. ..+|.+|.+++||+++||.|| +|++.... .
T Consensus 406 ~~g~mG~~lpaaiGa~la~----~~~~vv~i~GDGsf~m~--~~eL~Ta~~~~lpi~ivV~NN~~y~~~~~~~~~~~~~~ 479 (539)
T TIGR02418 406 GMQTLGVALPWAIGAALVR----PNTKVVSVSGDGGFLFS--SMELETAVRLKLNIVHIIWNDNGYNMVEFQEEMKYQRS 479 (539)
T ss_pred CccccccHHHHHHHHHHhC----CCCcEEEEEcchhhhch--HHHHHHHHHhCCCeEEEEEECCcchHHHHHHHHhcCCc
Confidence 3579999999999999984 67899999999999864 466999999999977766655 46653211 0
Q ss_pred --cccCCcCHHHHHhhcCeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecC
Q 016909 213 --DQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRV 269 (380)
Q Consensus 213 --~~~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R~ 269 (380)
......|+.+.|++||+++.+|+ +++++.+++++|++ .++|+|||+.+.+.
T Consensus 480 ~~~~~~~~d~~~lA~a~G~~~~~V~--~~~eL~~al~~a~~----~~~p~lIev~v~~~ 532 (539)
T TIGR02418 480 SGVDFGPIDFVKYAESFGAKGLRVE--SPDQLEPTLRQAME----VEGPVVVDIPVDYS 532 (539)
T ss_pred ccccCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHh----CCCCEEEEEEecCc
Confidence 01234689999999999999999 99999999999875 47999999999553
No 86
>PRK08199 thiamine pyrophosphate protein; Validated
Probab=99.55 E-value=3.1e-14 Score=149.47 Aligned_cols=116 Identities=24% Similarity=0.295 Sum_probs=93.8
Q ss_pred ccccccCccHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCC-cceeeec-c------
Q 016909 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPI-S------ 212 (380)
Q Consensus 141 ~~g~lG~~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~-~~i~~~~-~------ 212 (380)
..|+||+++|.|+|++++ .++++|||++|||+|+.. .++|.+|++++||+++||.||+ |++.... .
T Consensus 413 ~~g~mG~glpaaiGa~la----~p~~~vv~i~GDGsf~~~--~~el~ta~~~~l~i~~vv~nN~~~~~~~~~~~~~~~~~ 486 (557)
T PRK08199 413 TSGSMGYGLPAAIAAKLL----FPERTVVAFAGDGCFLMN--GQELATAVQYGLPIIVIVVNNGMYGTIRMHQEREYPGR 486 (557)
T ss_pred CCccccchHHHHHHHHHh----CCCCcEEEEEcchHhhcc--HHHHHHHHHhCCCeEEEEEeCCcchHHHHHHHHhcCCc
Confidence 358999999999998887 468899999999999853 4779999999999999888887 6643211 0
Q ss_pred ---cccCCcCHHHHHhhcCeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeec
Q 016909 213 ---DQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 268 (380)
Q Consensus 213 ---~~~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R 268 (380)
......|+++.+++||+++.+|+ +++++.++++++++ .++|+|||+.+.+
T Consensus 487 ~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~~----~~gp~li~v~~~~ 539 (557)
T PRK08199 487 VSGTDLTNPDFAALARAYGGHGETVE--RTEDFAPAFERALA----SGKPALIEIRIDP 539 (557)
T ss_pred cccccCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHh----CCCCEEEEEEeCH
Confidence 11123689999999999999999 88898888888765 5899999999854
No 87
>PRK09124 pyruvate dehydrogenase; Provisional
Probab=99.55 E-value=3.4e-14 Score=149.64 Aligned_cols=116 Identities=23% Similarity=0.287 Sum_probs=93.3
Q ss_pred ccccccCccHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCC-cceeee---------
Q 016909 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTP--------- 210 (380)
Q Consensus 141 ~~g~lG~~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~-~~i~~~--------- 210 (380)
..|+||+++|.|+|+++|. +++.|||++|||+|++. ..+|.+|.+++||+++||.||+ |++...
T Consensus 406 ~~G~mG~~lpaAiGa~la~----p~r~vv~i~GDGsf~m~--~~eL~Ta~~~~lpv~ivV~NN~~~g~i~~~~~~~~~~~ 479 (574)
T PRK09124 406 NHGSMANAMPQALGAQAAH----PGRQVVALSGDGGFSML--MGDFLSLVQLKLPVKIVVFNNSVLGFVAMEMKAGGYLT 479 (574)
T ss_pred CcccccchHHHHHHHHHhC----CCCeEEEEecCcHHhcc--HHHHHHHHHhCCCeEEEEEeCCccccHHHHHHhcCCcc
Confidence 4589999999999999884 67899999999999864 3569999999999777666554 765311
Q ss_pred cccccCCcCHHHHHhhcCeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeec
Q 016909 211 ISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 268 (380)
Q Consensus 211 ~~~~~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R 268 (380)
........|+++.|++||+++.+|+ +++++.+++++|++ .++|+|||+.+.+
T Consensus 480 ~~~~~~~~d~~~lA~a~G~~~~~v~--~~~eL~~al~~a~~----~~~p~lIev~i~~ 531 (574)
T PRK09124 480 DGTDLHNPDFAAIAEACGITGIRVE--KASELDGALQRAFA----HDGPALVDVVTAK 531 (574)
T ss_pred ccCcCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHh----CCCCEEEEEEecC
Confidence 0011234689999999999999998 99999999998875 4799999999854
No 88
>PRK06112 acetolactate synthase catalytic subunit; Validated
Probab=99.55 E-value=3.3e-14 Score=149.91 Aligned_cols=115 Identities=29% Similarity=0.400 Sum_probs=92.9
Q ss_pred cccccCccHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCC-cceeeeccc-------
Q 016909 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPISD------- 213 (380)
Q Consensus 142 ~g~lG~~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~-~~i~~~~~~------- 213 (380)
.|+||+++|.|+|+++| .++++|||++|||+|+ +..++|++|+++++|+++||.||+ |++......
T Consensus 436 ~gsmG~~l~~aiGa~la----~~~~~vv~i~GDGsf~--~~~~el~ta~~~~l~~~~vv~NN~~~g~~~~~~~~~~~~~~ 509 (578)
T PRK06112 436 LAGLGWGVPMAIGAKVA----RPGAPVICLVGDGGFA--HVWAELETARRMGVPVTIVVLNNGILGFQKHAETVKFGTHT 509 (578)
T ss_pred ccccccHHHHHHHHHhh----CCCCcEEEEEcchHHH--hHHHHHHHHHHhCCCeEEEEEeCCccCCEEeccccccCCcc
Confidence 47899999999999887 4678999999999997 456889999999999888888886 343221110
Q ss_pred ---ccCCcCHHHHHhhcCeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeec
Q 016909 214 ---QFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 268 (380)
Q Consensus 214 ---~~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R 268 (380)
.....++.++|++||+++++|+ +++++.++++++++ .++|+|||+++.+
T Consensus 510 ~~~~~~~~d~~~~A~a~G~~~~~v~--~~~el~~al~~a~~----~~gp~lIev~~~~ 561 (578)
T PRK06112 510 DACHFAAVDHAAIARACGCDGVRVE--DPAELAQALAAAMA----APGPTLIEVITDP 561 (578)
T ss_pred ccCcCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHh----CCCCEEEEEEcCc
Confidence 1124689999999999999998 89999888888875 5799999999854
No 89
>PRK07418 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=99.55 E-value=2.1e-14 Score=152.40 Aligned_cols=116 Identities=22% Similarity=0.239 Sum_probs=93.8
Q ss_pred ccccccCccHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCC-cceeeecc-------
Q 016909 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPIS------- 212 (380)
Q Consensus 141 ~~g~lG~~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~-~~i~~~~~------- 212 (380)
..|+||.++|.|+|+++|. +++.||+++|||+|++. ..+|.+|++|+||+++||.||+ |++.....
T Consensus 432 ~~g~mG~glpaAiGA~lA~----p~r~Vv~i~GDG~f~m~--~~eL~Ta~r~~lpvi~vV~NN~~~g~i~~~q~~~~~~~ 505 (616)
T PRK07418 432 GLGTMGFGMPAAMGVKVAL----PDEEVICIAGDASFLMN--IQELGTLAQYGINVKTVIINNGWQGMVRQWQESFYGER 505 (616)
T ss_pred CccccccHHHHHHHHHHhC----CCCcEEEEEcchHhhhh--HHHHHHHHHhCCCeEEEEEECCcchHHHHHHHHhcCCC
Confidence 3589999999999999884 68899999999999854 4569999999999888887776 55422100
Q ss_pred ---ccc--CCcCHHHHHhhcCeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeec
Q 016909 213 ---DQF--RSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 268 (380)
Q Consensus 213 ---~~~--~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R 268 (380)
... ...|+++.|++||+++++|+ +++++.+++++|++ .++|+|||+.+.+
T Consensus 506 ~~~~~~~~~~~d~~~~A~a~G~~g~~V~--~~~el~~al~~a~~----~~~p~lIeV~i~~ 560 (616)
T PRK07418 506 YSASNMEPGMPDFVKLAEAFGVKGMVIS--ERDQLKDAIAEALA----HDGPVLIDVHVRR 560 (616)
T ss_pred ceeecCCCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHh----CCCCEEEEEEecC
Confidence 001 24689999999999999998 99999999988875 4789999999854
No 90
>PLN02573 pyruvate decarboxylase
Probab=99.55 E-value=3.2e-14 Score=149.96 Aligned_cols=116 Identities=17% Similarity=0.152 Sum_probs=93.1
Q ss_pred ccccccCccHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcC-Ccceeeecc----ccc
Q 016909 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN-GWAISTPIS----DQF 215 (380)
Q Consensus 141 ~~g~lG~~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN-~~~i~~~~~----~~~ 215 (380)
..|+||+++|.|+|+++|. ++++|||++|||+|++ ...+|.+|++++||+++||.|| +|++..... ...
T Consensus 426 ~~gsmG~glpaaiGa~lA~----p~r~vv~i~GDG~f~m--~~~EL~Ta~r~~lpvv~vV~NN~~yg~~~~~~~~~~~~~ 499 (578)
T PLN02573 426 QYGSIGWSVGATLGYAQAA----PDKRVIACIGDGSFQV--TAQDVSTMIRCGQKSIIFLINNGGYTIEVEIHDGPYNVI 499 (578)
T ss_pred chhhhhhhhhHHHHHHHhC----CCCceEEEEeccHHHh--HHHHHHHHHHcCCCCEEEEEeCCceeEEEeecccCcccc
Confidence 3689999999999999985 6789999999999985 4467999999999977766555 577643221 112
Q ss_pred CCcCHHHHHhhcC-----eeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEe
Q 016909 216 RSDGAVVKGRAYG-----VRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALT 266 (380)
Q Consensus 216 ~~~~~~~~a~a~G-----~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t 266 (380)
...++.+.|++|| +++.+|+ +++++.+++++|++. +.++|+|||+.+
T Consensus 500 ~~~d~~~lA~a~G~~~g~~~~~~V~--~~~eL~~al~~a~~~--~~~~p~lieV~v 551 (578)
T PLN02573 500 KNWNYTGLVDAIHNGEGKCWTAKVR--TEEELIEAIATATGE--KKDCLCFIEVIV 551 (578)
T ss_pred CCCCHHHHHHHhcCcCCceeEEEec--CHHHHHHHHHHHHhh--CCCCcEEEEEEc
Confidence 3468999999995 8999999 899999999998742 247899999988
No 91
>PRK07710 acetolactate synthase catalytic subunit; Reviewed
Probab=99.54 E-value=5.4e-14 Score=148.03 Aligned_cols=115 Identities=27% Similarity=0.357 Sum_probs=92.1
Q ss_pred cccccCccHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCC-cceeeec---------
Q 016909 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPI--------- 211 (380)
Q Consensus 142 ~g~lG~~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~-~~i~~~~--------- 211 (380)
.|+||+++|.|+|+++|. +++.||+++|||+|+.. + .+|++|.++++|+++||.||+ |++....
T Consensus 423 ~g~mG~glpaAiGaala~----p~~~vv~i~GDGsf~m~-~-~eL~ta~r~~lpi~ivV~NN~~~~~i~~~~~~~~~~~~ 496 (571)
T PRK07710 423 LGTMGFGLPAAIGAQLAK----PDETVVAIVGDGGFQMT-L-QELSVIKELSLPVKVVILNNEALGMVRQWQEEFYNQRY 496 (571)
T ss_pred cccccchHHHHHHHHHhC----CCCcEEEEEcchHHhhh-H-HHHHHHHHhCCCeEEEEEECchHHHHHHHHHHHhCCcc
Confidence 489999999999999984 67899999999999864 3 459999999999777666665 6653210
Q ss_pred --ccccCCcCHHHHHhhcCeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeec
Q 016909 212 --SDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 268 (380)
Q Consensus 212 --~~~~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R 268 (380)
.......++++.|++||+++.+|+ +.+++..++++|++ .++|+|||+.+.+
T Consensus 497 ~~~~~~~~~d~~~~A~a~G~~~~~v~--~~~el~~al~~a~~----~~~p~lieV~vd~ 549 (571)
T PRK07710 497 SHSLLSCQPDFVKLAEAYGIKGVRID--DELEAKEQLQHAIE----LQEPVVIDCRVLQ 549 (571)
T ss_pred eeccCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHh----CCCCEEEEEEecC
Confidence 011134689999999999999998 88888888888775 5799999999965
No 92
>PRK06965 acetolactate synthase 3 catalytic subunit; Validated
Probab=99.54 E-value=4.2e-14 Score=149.35 Aligned_cols=117 Identities=22% Similarity=0.269 Sum_probs=94.1
Q ss_pred ccccccCccHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCC-cceeee---------
Q 016909 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTP--------- 210 (380)
Q Consensus 141 ~~g~lG~~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~-~~i~~~--------- 210 (380)
..|+||+++|.|+|+++|. +++.|||++|||+|++. ..+|.+|.+++||+++||.||+ |++...
T Consensus 435 ~~gsmG~glpaaiGa~lA~----p~r~Vv~i~GDGsf~m~--~~eL~Ta~r~~lpviivV~NN~~~~~i~~~q~~~~~~~ 508 (587)
T PRK06965 435 GLGTMGVGLPYAMGIKMAH----PDDDVVCITGEGSIQMC--IQELSTCLQYDTPVKIISLNNRYLGMVRQWQEIEYSKR 508 (587)
T ss_pred CcccccchHHHHHHHHHhC----CCCcEEEEEcchhhhcC--HHHHHHHHHcCCCeEEEEEECCcchHHHHHHHHhcCCC
Confidence 3589999999999999984 67899999999999864 4679999999999888777776 543211
Q ss_pred cccc-c-CCcCHHHHHhhcCeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeec
Q 016909 211 ISDQ-F-RSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 268 (380)
Q Consensus 211 ~~~~-~-~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R 268 (380)
.... . ...|+++.|++||+++.+|+ +..++.+++++|+++ .++|+|||+.+.+
T Consensus 509 ~~~~~~~~~~d~~~iA~a~G~~~~~v~--~~~eL~~al~~a~~~---~~~p~lieV~i~~ 563 (587)
T PRK06965 509 YSHSYMDALPDFVKLAEAYGHVGMRIE--KTSDVEPALREALRL---KDRTVFLDFQTDP 563 (587)
T ss_pred ccccCCCCCCCHHHHHHHCCCEEEEEC--CHHHHHHHHHHHHhc---CCCcEEEEEEecc
Confidence 1111 1 24689999999999999998 999999999998863 3689999999854
No 93
>PRK08979 acetolactate synthase 3 catalytic subunit; Validated
Probab=99.54 E-value=4.7e-14 Score=148.51 Aligned_cols=116 Identities=24% Similarity=0.311 Sum_probs=93.2
Q ss_pred cccccCccHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCC-cceeeec---------
Q 016909 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPI--------- 211 (380)
Q Consensus 142 ~g~lG~~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~-~~i~~~~--------- 211 (380)
.|+||+++|.|+|+++|. +++.|||++|||+|++. ..+|.+|.+++||+++||.||+ |++....
T Consensus 420 ~g~mG~glpaaiGa~la~----p~~~vv~i~GDG~f~m~--~~EL~Ta~r~~lpv~~vV~NN~~y~~i~~~q~~~~~~~~ 493 (572)
T PRK08979 420 LGTMGFGLPAAMGVKFAM----PDETVVCVTGDGSIQMN--IQELSTALQYDIPVKIINLNNRFLGMVKQWQDMIYQGRH 493 (572)
T ss_pred cccccchhhHHHhhhhhC----CCCeEEEEEcchHhhcc--HHHHHHHHHcCCCeEEEEEeCCccHHHHHHHHHHhCCcc
Confidence 579999999999999984 67899999999999864 4669999999999777776665 5543210
Q ss_pred ccc-c-CCcCHHHHHhhcCeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeec
Q 016909 212 SDQ-F-RSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 268 (380)
Q Consensus 212 ~~~-~-~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R 268 (380)
... . ...|+++.|++||+++.+|+ ++.++..++++|++. .++|+|||+.+.+
T Consensus 494 ~~~~~~~~~d~~~~A~a~G~~~~~v~--~~~eL~~al~~a~~~---~~~p~lIev~i~~ 547 (572)
T PRK08979 494 SHSYMDSVPDFAKIAEAYGHVGIRIS--DPDELESGLEKALAM---KDRLVFVDINVDE 547 (572)
T ss_pred cccCCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHhc---CCCcEEEEEEeCC
Confidence 011 1 24689999999999999999 999999999988752 3789999999854
No 94
>TIGR02720 pyruv_oxi_spxB pyruvate oxidase. Members of this family are examples of pyruvate oxidase (EC 1.2.3.3), an enzyme with FAD and TPP as cofactors that catalyzes the reaction pyruvate + phosphate + O2 + H2O = acetyl phosphate + CO2 + H2O2. It should not be confused with pyruvate dehydrogenase [cytochrome] (EC 1.2.2.2) as in E. coli PoxB, although the E. coli enzyme is closely homologous and has pyruvate oxidase as an alternate name.
Probab=99.53 E-value=5.9e-14 Score=147.88 Aligned_cols=117 Identities=21% Similarity=0.261 Sum_probs=93.3
Q ss_pred cccccCccHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEE-EcCCcceeeec----c----
Q 016909 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFIC-RNNGWAISTPI----S---- 212 (380)
Q Consensus 142 ~g~lG~~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv-~NN~~~i~~~~----~---- 212 (380)
.|+||+++|.|+|+++|. ++++||+++|||+|++. ..+|.+|++++||+++|| +||+|++.... .
T Consensus 407 ~gsmG~glpaAiGa~la~----p~r~Vv~i~GDGsf~m~--~~eL~Tavr~~lpi~~VV~NN~~yg~i~~~~~~~~~~~~ 480 (575)
T TIGR02720 407 FATMGVGVPGAIAAKLNY----PDRQVFNLAGDGAFSMT--MQDLLTQVQYHLPVINIVFSNCTYGFIKDEQEDTNQPLI 480 (575)
T ss_pred cchhhchHHHHHHHHHhC----CCCcEEEEEcccHHHhh--HHHHHHHHHhCCCeEEEEEeCCccHHHHHHHHHhCCCcc
Confidence 589999999999998874 68899999999999864 466999999999977765 55558753210 0
Q ss_pred -cccCCcCHHHHHhhcCeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeec
Q 016909 213 -DQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 268 (380)
Q Consensus 213 -~~~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R 268 (380)
......|++++|++||+++.+|+ +.+++.++++++++ + +.++|+|||+++..
T Consensus 481 ~~~~~~~df~~iA~a~G~~~~~v~--~~~el~~al~~a~~-~-~~~~p~liev~i~~ 533 (575)
T TIGR02720 481 GVDFNDADFAKIAEGVGAVGFRVN--KIEQLPAVFEQAKA-I-KQGKPVLIDAKITG 533 (575)
T ss_pred cccCCCCCHHHHHHHCCCEEEEeC--CHHHHHHHHHHHHh-h-CCCCcEEEEEEeCC
Confidence 11234689999999999999998 89999999999885 2 35799999999854
No 95
>PRK06457 pyruvate dehydrogenase; Provisional
Probab=99.53 E-value=6.7e-14 Score=146.71 Aligned_cols=116 Identities=16% Similarity=0.264 Sum_probs=93.1
Q ss_pred ccccccCccHHHHHHHHHhhhcCC-CceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcC-Ccceeeec-------
Q 016909 141 VSSTIATQLPHAVGAAYALKMDRK-DACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN-GWAISTPI------- 211 (380)
Q Consensus 141 ~~g~lG~~~p~AvG~A~A~k~~~~-~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN-~~~i~~~~------- 211 (380)
..|+||+++|.|+|+++|. + +++|||++|||+|+.. ..+|.+|.+++||+++||.|| +|++....
T Consensus 394 ~~g~mG~glpaaiGa~la~----p~~~~Vv~i~GDGsf~~~--~~eL~Ta~~~~lpi~ivV~NN~~~g~i~~~q~~~~~~ 467 (549)
T PRK06457 394 WLGSMGIGVPGSVGASFAV----ENKRQVISFVGDGGFTMT--MMELITAKKYDLPVKIIIYNNSKLGMIKFEQEVMGYP 467 (549)
T ss_pred CcchhhhhHHHHHHHHhcC----CCCCeEEEEEcccHHhhh--HHHHHHHHHHCCCeEEEEEECCccchHHHHHHHhcCC
Confidence 3699999999999999884 4 7899999999999854 467999999999977766555 56643210
Q ss_pred --ccccCCcCHHHHHhhcCeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeec
Q 016909 212 --SDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 268 (380)
Q Consensus 212 --~~~~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R 268 (380)
.......|+.+.|++||+++.+|+ +++++..+++++++ .++|+|||+++.+
T Consensus 468 ~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~el~~al~~a~~----~~~p~lIeV~i~~ 520 (549)
T PRK06457 468 EWGVDLYNPDFTKIAESIGFKGFRLE--EPKEAEEIIEEFLN----TKGPAVLDAIVDP 520 (549)
T ss_pred cccccCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHh----CCCCEEEEEEeCc
Confidence 011224689999999999999998 99999999999875 4799999999954
No 96
>TIGR03393 indolpyr_decarb indolepyruvate decarboxylase, Erwinia family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. Within the larger family, this model represents a clade of bacterial indolepyruvate decarboxylases, part of a pathway for biosynthesis of the plant hormone indole-3-acetic acid. Typically, these species interact with plants, as pathogens or as beneficial, root-associated bacteria.
Probab=99.53 E-value=4.2e-14 Score=147.90 Aligned_cols=114 Identities=20% Similarity=0.231 Sum_probs=91.6
Q ss_pred ccccccCccHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEc-CCcceeeecc------c
Q 016909 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRN-NGWAISTPIS------D 213 (380)
Q Consensus 141 ~~g~lG~~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~N-N~~~i~~~~~------~ 213 (380)
..|+||+++|.|+|+++|. ++++|||++|||+|++ ...+|.+|++++||+++||.| ++|++..... .
T Consensus 402 ~~g~mG~glpaaiGa~la~----p~~~vv~i~GDG~f~m--~~~EL~Ta~~~~lpi~~vV~NN~~y~~i~~~~~~~~~~~ 475 (539)
T TIGR03393 402 LWGSIGYTLPAAFGAQTAC----PNRRVILLIGDGSAQL--TIQELGSMLRDKQHPIILVLNNEGYTVERAIHGAEQRYN 475 (539)
T ss_pred hhhhhhhHHHHHHHHHhcC----CCCCeEEEEcCcHHHh--HHHHHHHHHHcCCCCEEEEEeCCceEEEEeecCCCCCcC
Confidence 3589999999999999884 7889999999999985 457799999999996665555 5577543211 1
Q ss_pred ccCCcCHHHHHhhcCee----EEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEe
Q 016909 214 QFRSDGAVVKGRAYGVR----SIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALT 266 (380)
Q Consensus 214 ~~~~~~~~~~a~a~G~~----~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t 266 (380)
.....++.+.+++||++ +.+|+ +..++.++++++++ .++|+|||+.+
T Consensus 476 ~~~~~df~~la~a~G~~~~~~~~~v~--~~~el~~al~~a~~----~~~p~liev~i 526 (539)
T TIGR03393 476 DIALWNWTHLPQALSLDPQSECWRVS--EAEQLADVLEKVAA----HERLSLIEVVL 526 (539)
T ss_pred cCCCCCHHHHHHHcCCCCccceEEec--cHHHHHHHHHHHhc----cCCeEEEEEEc
Confidence 22346899999999985 88998 89999999988875 48999999987
No 97
>PRK06466 acetolactate synthase 3 catalytic subunit; Validated
Probab=99.52 E-value=7.8e-14 Score=146.94 Aligned_cols=117 Identities=25% Similarity=0.271 Sum_probs=93.9
Q ss_pred ccccccCccHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCC-cceeeec--------
Q 016909 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPI-------- 211 (380)
Q Consensus 141 ~~g~lG~~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~-~~i~~~~-------- 211 (380)
..|+||+++|.|+|+++|. +++.|||++|||+|++. ..+|.+|.+++||+++||.||+ |++....
T Consensus 421 ~~gsmG~glpaAiGa~la~----p~r~Vv~i~GDG~f~m~--~~eL~Ta~r~~lpv~ivV~NN~~y~~i~~~q~~~~~~~ 494 (574)
T PRK06466 421 GLGTMGFGLPAAMGVKLAF----PDQDVACVTGEGSIQMN--IQELSTCLQYGLPVKIINLNNGALGMVRQWQDMQYEGR 494 (574)
T ss_pred CcchhhchHHHHHHHHHhC----CCCeEEEEEcchhhhcc--HHHHHHHHHhCCCeEEEEEeCCccHHHHHHHHHhcCCc
Confidence 3589999999999999984 67899999999999864 4679999999999777776664 6643210
Q ss_pred -ccc--cCCcCHHHHHhhcCeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeec
Q 016909 212 -SDQ--FRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 268 (380)
Q Consensus 212 -~~~--~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R 268 (380)
... ....|+.+.|++||+++.+|+ ++.++.+++++|++. .++|+|||+.+.+
T Consensus 495 ~~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~el~~al~~a~~~---~~~p~lIev~i~~ 549 (574)
T PRK06466 495 HSHSYMESLPDFVKLAEAYGHVGIRIT--DLKDLKPKLEEAFAM---KDRLVFIDIYVDR 549 (574)
T ss_pred eeecCCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHhc---CCCcEEEEEEeCC
Confidence 111 123689999999999999998 999999999988752 3799999999954
No 98
>PRK08617 acetolactate synthase; Reviewed
Probab=99.52 E-value=4.3e-14 Score=148.23 Aligned_cols=116 Identities=19% Similarity=0.253 Sum_probs=92.9
Q ss_pred ccccccCccHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcC-Ccceeeeccc------
Q 016909 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN-GWAISTPISD------ 213 (380)
Q Consensus 141 ~~g~lG~~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN-~~~i~~~~~~------ 213 (380)
..|+||+++|.|+|+++|. +++.|||++|||+|++. ..+|.+|.+++||+++||.|| .|++......
T Consensus 412 ~~g~mG~~lpaaiGa~la~----p~~~vv~i~GDGsf~m~--~~eL~Ta~~~~lpv~~vV~NN~~~~~~~~~~~~~~~~~ 485 (552)
T PRK08617 412 GMQTLGVALPWAIAAALVR----PGKKVVSVSGDGGFLFS--AMELETAVRLKLNIVHIIWNDGHYNMVEFQEEMKYGRS 485 (552)
T ss_pred ccccccccccHHHhhHhhc----CCCcEEEEEechHHhhh--HHHHHHHHHhCCCeEEEEEECCccchHHHHHHhhcCCc
Confidence 3579999999999999884 67899999999999854 466999999999987766555 4654321100
Q ss_pred ---ccCCcCHHHHHhhcCeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeec
Q 016909 214 ---QFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 268 (380)
Q Consensus 214 ---~~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R 268 (380)
.....|+.+.|++||+++.+|. +++++.+++++|++ .++|+|||+.+.+
T Consensus 486 ~~~~~~~~d~~~lA~a~G~~~~~v~--~~~eL~~al~~a~~----~~~p~liev~~~~ 537 (552)
T PRK08617 486 SGVDFGPVDFVKYAESFGAKGLRVT--SPDELEPVLREALA----TDGPVVIDIPVDY 537 (552)
T ss_pred ccCCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHh----CCCcEEEEEEecc
Confidence 1124689999999999999998 99999999998875 4789999999865
No 99
>TIGR03254 oxalate_oxc oxalyl-CoA decarboxylase. In a number of bacteria, including Oxalobacter formigenes from the human gut, a two-gene operon of oxc (oxalyl-CoA decarboxylase) and frc (formyl-CoA transferase) encodes a system for degrading and therefore detoxifying oxalate. Members of this family are the thiamine pyrophosphate (TPP)-containing enzyme oxalyl-CoA decarboxylase.
Probab=99.52 E-value=7.6e-14 Score=146.41 Aligned_cols=114 Identities=19% Similarity=0.170 Sum_probs=92.1
Q ss_pred cccccCccHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCC-ccee------e--ecc
Q 016909 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAIS------T--PIS 212 (380)
Q Consensus 142 ~g~lG~~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~-~~i~------~--~~~ 212 (380)
.|+||+++|.|+|+++| +++.||+++|||+|++. ..+|.+|++++||+++||.||+ |... . +..
T Consensus 416 ~gsmG~~lpaaiGaala-----~~~~vv~i~GDGsf~m~--~~EL~Ta~r~~l~v~~vV~NN~~~~~~~~~~~~~~~~~~ 488 (554)
T TIGR03254 416 WGVMGIGMGYAIAAAVE-----TGKPVVALEGDSAFGFS--GMEVETICRYNLPVCVVIFNNGGIYRGDDVNVVGADPAP 488 (554)
T ss_pred CCcCCchHHHHHHHHhc-----CCCcEEEEEcCchhccc--HHHHHHHHHcCCCEEEEEEeChhhhhhhhhhhcCCCCCc
Confidence 58999999999999997 26889999999999865 3569999999999888888886 4111 0 000
Q ss_pred cc-cCCcCHHHHHhhcCeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeec
Q 016909 213 DQ-FRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 268 (380)
Q Consensus 213 ~~-~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R 268 (380)
.. ....++++.+++||+++++|+ +++++.+++++|++ .++|+|||+.+.+
T Consensus 489 ~~~~~~~df~~la~a~G~~~~~v~--~~~el~~al~~a~~----~~~p~lIev~id~ 539 (554)
T TIGR03254 489 TVLVHGARYDKMMKAFGGVGYNVT--TPDELKAALNEALA----SGKPTLINAVIDP 539 (554)
T ss_pred cccCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHh----CCCCEEEEEEECC
Confidence 11 135689999999999999998 99999999998875 4799999999854
No 100
>PRK07525 sulfoacetaldehyde acetyltransferase; Validated
Probab=99.52 E-value=6.5e-14 Score=147.96 Aligned_cols=121 Identities=19% Similarity=0.226 Sum_probs=95.6
Q ss_pred ccccccCccHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcC-Ccceeeecc-------
Q 016909 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN-GWAISTPIS------- 212 (380)
Q Consensus 141 ~~g~lG~~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN-~~~i~~~~~------- 212 (380)
..|+||+++|.|+|+++|. ++++||+++|||+|+.+ ..+|.+|.+++||+++||.|| +|++.....
T Consensus 433 ~~g~mG~glp~aiGa~la~----p~r~vv~i~GDG~f~~~--~~el~Ta~~~~lpv~ivV~NN~~y~~~~~~~~~~~~~~ 506 (588)
T PRK07525 433 SFGNCGYAFPAIIGAKIAC----PDRPVVGFAGDGAWGIS--MNEVMTAVRHNWPVTAVVFRNYQWGAEKKNQVDFYNNR 506 (588)
T ss_pred cccccccHHHHHHHHHHhC----CCCcEEEEEcCchHhcc--HHHHHHHHHhCCCeEEEEEeCchhHHHHHHHHHHhCCC
Confidence 3589999999999999884 67899999999999876 355889999999977777555 676432100
Q ss_pred ---ccc-CCcCHHHHHhhcCeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCC
Q 016909 213 ---DQF-RSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVG 270 (380)
Q Consensus 213 ---~~~-~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R~~ 270 (380)
... ...|+.++|++||+++++|+ +++++.++++++++.. +.++|+|||+.+.+-.
T Consensus 507 ~~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~el~~al~~a~~~~-~~~~p~lIev~~~~~~ 565 (588)
T PRK07525 507 FVGTELDNNVSYAGIAEAMGAEGVVVD--TQEELGPALKRAIDAQ-NEGKTTVIEIMCNQEL 565 (588)
T ss_pred cccccCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHhcC-CCCCcEEEEEEecccc
Confidence 011 23689999999999999998 9999999999998753 2368999999996544
No 101
>PRK08155 acetolactate synthase catalytic subunit; Validated
Probab=99.52 E-value=8.6e-14 Score=146.32 Aligned_cols=115 Identities=19% Similarity=0.243 Sum_probs=94.1
Q ss_pred cccccCccHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCC-cceeeecc--------
Q 016909 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPIS-------- 212 (380)
Q Consensus 142 ~g~lG~~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~-~~i~~~~~-------- 212 (380)
.|+||+++|.|+|+++|. ++++|||++|||+|++. ..| |.+|.+++||+++||.||+ |++.....
T Consensus 418 ~g~mG~~lpaaiGa~la~----~~~~vv~i~GDGsf~~~-~~e-L~ta~~~~lpvi~vV~NN~~~g~~~~~q~~~~~~~~ 491 (564)
T PRK08155 418 LGTMGFGLPAAIGAALAN----PERKVLCFSGDGSLMMN-IQE-MATAAENQLDVKIILMNNEALGLVHQQQSLFYGQRV 491 (564)
T ss_pred cccccchhHHHHHHHHhC----CCCcEEEEEccchhhcc-HHH-HHHHHHhCCCeEEEEEeCCcccccHHHHHHhcCCCe
Confidence 489999999999999984 57899999999999875 444 9999999999888887776 77643211
Q ss_pred --ccc-CCcCHHHHHhhcCeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeec
Q 016909 213 --DQF-RSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 268 (380)
Q Consensus 213 --~~~-~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R 268 (380)
... ...|+++.|++||+++++|+ +++++.+++++|++ .++|+|||+.+.+
T Consensus 492 ~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~~----~~~p~lIeV~~~~ 544 (564)
T PRK08155 492 FAATYPGKINFMQIAAGFGLETCDLN--NEADPQAALQEAIN----RPGPALIHVRIDA 544 (564)
T ss_pred eeccCCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHh----CCCCEEEEEEeCC
Confidence 111 24689999999999999998 89999998888875 4799999999954
No 102
>TIGR03457 sulphoacet_xsc sulfoacetaldehyde acetyltransferase. Members of this protein family are sulfoacetaldehyde acetyltransferase, an enzyme of taurine utilization. Taurine, or 2-aminoethanesulfonate, can be used by bacteria as a source of carbon, nitrogen, and sulfur.
Probab=99.52 E-value=8.3e-14 Score=146.86 Aligned_cols=118 Identities=22% Similarity=0.291 Sum_probs=94.1
Q ss_pred cccccCccHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcC-Ccceeeecc--------
Q 016909 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN-GWAISTPIS-------- 212 (380)
Q Consensus 142 ~g~lG~~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN-~~~i~~~~~-------- 212 (380)
.|+||+++|.|+|+++|. +++.|||++|||+|++. ..+|.+|.+++||+++||.|| +|++.....
T Consensus 429 ~g~mG~~lpaaiGa~la~----p~~~Vv~i~GDG~f~m~--~~eL~Tavr~~lpvi~vV~NN~~yg~i~~~~~~~~~~~~ 502 (579)
T TIGR03457 429 FGNCGYAFPTIIGAKIAA----PDRPVVAYAGDGAWGMS--MNEIMTAVRHDIPVTAVVFRNRQWGAEKKNQVDFYNNRF 502 (579)
T ss_pred cccccchHHHHHhhhhhC----CCCcEEEEEcchHHhcc--HHHHHHHHHhCCCeEEEEEECcchHHHHHHHHHhhCCcc
Confidence 489999999999999984 67899999999999865 366999999999977766655 476532110
Q ss_pred --cccCC-cCHHHHHhhcCeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeec
Q 016909 213 --DQFRS-DGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 268 (380)
Q Consensus 213 --~~~~~-~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R 268 (380)
..... .|+.+.|++||+++.+|+ +++++.+++++|++.. +.++|+|||+.+.+
T Consensus 503 ~~~~~~~~~d~~~lA~a~G~~g~~v~--~~~el~~al~~a~~~~-~~~~p~lieV~v~~ 558 (579)
T TIGR03457 503 VGTELESELSFAGIADAMGAKGVVVD--KPEDVGPALKKAIAAQ-AEGKTTVIEIVCTR 558 (579)
T ss_pred eeccCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHhhC-CCCCcEEEEEEeCC
Confidence 01112 489999999999999998 9999999999998643 24689999999954
No 103
>cd02018 TPP_PFOR Thiamine pyrophosphate (TPP family), Pyruvate ferredoxin/flavodoxin oxidoreductase (PFOR) subfamily, TPP-binding module; PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. PFORs can be homodimeric, heterodimeric, or heterotetrameric, depending on the organism. These enzymes are dependent on TPP and a divalent metal cation as cofactors.
Probab=99.52 E-value=4.6e-14 Score=132.68 Aligned_cols=119 Identities=20% Similarity=0.198 Sum_probs=89.7
Q ss_pred ccccccCccHHHHHHHHHh-hhcCCCceeEEEeCccccC-cchHHHHHHHHHHcCCCEEEEEEcCC-cceeeeccc----
Q 016909 141 VSSTIATQLPHAVGAAYAL-KMDRKDACAVTYFGDGGTS-EGDFHAALNFSAVTEAPVIFICRNNG-WAISTPISD---- 213 (380)
Q Consensus 141 ~~g~lG~~~p~AvG~A~A~-k~~~~~~~vv~~~GDG~~~-eG~~~Eal~~A~~~~Lpvi~vv~NN~-~~i~~~~~~---- 213 (380)
..|+||.++|.|+|+++|. +...+++.|||+.|||++. .| +. .+.++.++++|+++||.||+ |++......
T Consensus 62 ~~g~mG~GlpaAiGA~~a~~~~~~p~~~Vv~i~GDG~~~~~g-~~-~l~ta~~~~l~i~ivVlNN~~yg~~~~q~~~~~~ 139 (237)
T cd02018 62 DANAVASGLKRGLKARFPKDRELDKKKDVVVIGGDGATYDIG-FG-ALSHSLFRGEDITVIVLDNEVYSNTGGQRSGATP 139 (237)
T ss_pred CHHHHHHHHHHHHHhhcccccccCCCCcEEEEeCchHHHhcc-HH-HHHHHHHcCCCeEEEEECCccccCCCCCCCCCCc
Confidence 3489999999999998871 1113678999999999984 44 33 46677889999888887776 554321110
Q ss_pred ------------ccCCcCHHHHHhhcCeeEEE---EeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEe
Q 016909 214 ------------QFRSDGAVVKGRAYGVRSIR---VDGNDALAIYSAVHAAREMAIGEGRPILIEALT 266 (380)
Q Consensus 214 ------------~~~~~~~~~~a~a~G~~~~~---VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t 266 (380)
.....|+++.|++||+++++ |+ ++.++.+++++|++ +.+||+||++.+
T Consensus 140 ~g~~~~~~~~~~~~~~~D~~~iA~a~G~~~~~~~~v~--~~~~l~~al~~al~---~~~GP~lI~v~i 202 (237)
T cd02018 140 LGADSKMAPAGKKEDKKDLVLIAATHGCVYVARLSPA--LKKHFLKVVKEAIS---RTDGPTFIHAYT 202 (237)
T ss_pred CCCcccccCCCCcCCCCCHHHHHHHCCCCEEEEEccC--CHHHHHHHHHHHHh---cCCCCEEEEEeC
Confidence 12346899999999999986 66 89999999998885 148999999986
No 104
>PRK08527 acetolactate synthase 3 catalytic subunit; Validated
Probab=99.52 E-value=1e-13 Score=145.78 Aligned_cols=115 Identities=25% Similarity=0.291 Sum_probs=92.6
Q ss_pred cccccCccHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCC-cceeeecc--------
Q 016909 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPIS-------- 212 (380)
Q Consensus 142 ~g~lG~~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~-~~i~~~~~-------- 212 (380)
.|+||+++|.|+|+++|. +++.|||++|||+|++. . .+|.+|.+++||+|+||.||+ |++.....
T Consensus 413 ~g~mG~~l~~aiGa~la~----p~~~vv~i~GDG~f~m~-~-~eL~Ta~~~~lpvi~vV~NN~~~~~i~~~~~~~~~~~~ 486 (563)
T PRK08527 413 LGTMGYGLPAALGAKLAV----PDKVVINFTGDGSILMN-I-QELMTAVEYKIPVINIILNNNFLGMVRQWQTFFYEERY 486 (563)
T ss_pred cccccchHHHHHHHHHhC----CCCcEEEEecCchhccc-H-HHHHHHHHhCCCeEEEEEECCcchhHHHHHHhhcCCce
Confidence 489999999999999984 57889999999999874 3 449999999999888776665 55422110
Q ss_pred ---cccCCcCHHHHHhhcCeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeec
Q 016909 213 ---DQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 268 (380)
Q Consensus 213 ---~~~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R 268 (380)
......++.+.+++||+++++|+ +++++.+++++|++ .++|+|||+.+.+
T Consensus 487 ~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~~----~~~p~lieV~v~~ 539 (563)
T PRK08527 487 SETDLSTQPDFVKLAESFGGIGFRVT--TKEEFDKALKEALE----SDKVALIDVKIDR 539 (563)
T ss_pred eeccCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHh----CCCCEEEEEEECC
Confidence 11123689999999999999998 89999999988875 4799999999976
No 105
>PRK08273 thiamine pyrophosphate protein; Provisional
Probab=99.52 E-value=9.3e-14 Score=146.99 Aligned_cols=117 Identities=25% Similarity=0.279 Sum_probs=93.5
Q ss_pred ccccccCccHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHc-----CCCEEEEEEcCC-cceeeec---
Q 016909 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVT-----EAPVIFICRNNG-WAISTPI--- 211 (380)
Q Consensus 141 ~~g~lG~~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~-----~Lpvi~vv~NN~-~~i~~~~--- 211 (380)
..|+||+++|.|+|+++|. +++.|||++|||+|++... .+|.+|.+| +||+++||.||+ |++....
T Consensus 413 ~~g~mG~glpaaiGa~la~----p~~~Vv~i~GDG~f~m~~~-~EL~Ta~r~~~~~~~lpviivV~NN~~~~~i~~~q~~ 487 (597)
T PRK08273 413 TLATMGPAVPYAIAAKFAH----PDRPVIALVGDGAMQMNGM-AELITVAKYWRQWSDPRLIVLVLNNRDLNQVTWEQRV 487 (597)
T ss_pred ccccccchHHHHHHHHHhC----CCCcEEEEEcchhHhccch-HHHHHHHHHhhcccCCCEEEEEEeCCcchHHHHHHHH
Confidence 3589999999999999984 6889999999999975422 569999999 899888877775 6542110
Q ss_pred ---------ccccCCcCHHHHHhhcCeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeec
Q 016909 212 ---------SDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 268 (380)
Q Consensus 212 ---------~~~~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R 268 (380)
....+..|+++.|++||+++.+|. +++++..++++|++ .++|+|||+.+.+
T Consensus 488 ~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~eL~~al~~a~~----~~~p~lIeV~~~~ 547 (597)
T PRK08273 488 MEGDPKFEASQDLPDVPYARFAELLGLKGIRVD--DPEQLGAAWDEALA----ADRPVVLEVKTDP 547 (597)
T ss_pred hcCCCcccccccCCCCCHHHHHHHCCCEEEEEC--CHHHHHHHHHHHHh----CCCCEEEEEEeCC
Confidence 011134679999999999999999 89999999999876 4899999999955
No 106
>PRK08322 acetolactate synthase; Reviewed
Probab=99.51 E-value=7.9e-14 Score=146.00 Aligned_cols=116 Identities=20% Similarity=0.264 Sum_probs=92.8
Q ss_pred ccccccCccHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEc-CCcceeeec--------
Q 016909 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRN-NGWAISTPI-------- 211 (380)
Q Consensus 141 ~~g~lG~~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~N-N~~~i~~~~-------- 211 (380)
..|+||+++|.|+|+++|. +++.||+++|||+|+.. ..+|.+|.++++|+++||.| ++|++....
T Consensus 404 ~~g~mG~~lpaaiGa~la~----p~~~vv~i~GDGsf~m~--~~eL~Ta~~~~lpv~iiV~NN~~~g~~~~~~~~~~~~~ 477 (547)
T PRK08322 404 ALATMGAGLPSAIAAKLVH----PDRKVLAVCGDGGFMMN--SQELETAVRLGLPLVVLILNDNAYGMIRWKQENMGFED 477 (547)
T ss_pred CcccccchhHHHHHHHHhC----CCCcEEEEEcchhHhcc--HHHHHHHHHhCCCeEEEEEeCCCcchHHHHHHhhcCCc
Confidence 3589999999999999884 68899999999999854 35699999999997766655 457653210
Q ss_pred -ccccCCcCHHHHHhhcCeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeec
Q 016909 212 -SDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 268 (380)
Q Consensus 212 -~~~~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R 268 (380)
.......|+++.|++||+++++|+ +++++.++++++++ .++|+|||+.+.+
T Consensus 478 ~~~~~~~~df~~lA~a~G~~~~~v~--~~~eL~~al~~a~~----~~~p~lIev~v~~ 529 (547)
T PRK08322 478 FGLDFGNPDFVKYAESYGAKGYRVE--SADDLLPTLEEALA----QPGVHVIDCPVDY 529 (547)
T ss_pred ccccCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHh----CCCCEEEEEEecC
Confidence 011124689999999999999998 89999999998875 4799999999854
No 107
>CHL00099 ilvB acetohydroxyacid synthase large subunit
Probab=99.51 E-value=1.1e-13 Score=146.18 Aligned_cols=116 Identities=22% Similarity=0.282 Sum_probs=93.3
Q ss_pred ccccccCccHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCC-cceeee---------
Q 016909 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTP--------- 210 (380)
Q Consensus 141 ~~g~lG~~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~-~~i~~~--------- 210 (380)
..|+||+++|.|+|+++|. ++++|||++|||+|+.. ..+|.+|.+|+||+++||.||+ |++...
T Consensus 428 ~~g~mG~glpaaiGaala~----p~~~vv~i~GDG~f~m~--~~eL~Ta~~~~l~~~~vV~NN~~y~~i~~~q~~~~~~~ 501 (585)
T CHL00099 428 GLGTMGYGLPAAIGAQIAH----PNELVICISGDASFQMN--LQELGTIAQYNLPIKIIIINNKWQGMVRQWQQAFYGER 501 (585)
T ss_pred cccchhhhHHHHHHHHHhC----CCCeEEEEEcchhhhhh--HHHHHHHHHhCCCeEEEEEECCcchHHHHHHHHhcCCC
Confidence 4589999999999999984 57899999999999854 4679999999999888888777 443210
Q ss_pred ccc---ccCCcCHHHHHhhcCeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeec
Q 016909 211 ISD---QFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 268 (380)
Q Consensus 211 ~~~---~~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R 268 (380)
... .....++.+++++||+++++|+ +++++.+++++|++ .++|+|||+.+.+
T Consensus 502 ~~~~~~~~~~~d~~~la~a~G~~~~~v~--~~~el~~al~~a~~----~~~p~liev~v~~ 556 (585)
T CHL00099 502 YSHSNMEEGAPDFVKLAEAYGIKGLRIK--SRKDLKSSLKEALD----YDGPVLIDCQVIE 556 (585)
T ss_pred cccccCCCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHh----CCCCEEEEEEECC
Confidence 000 1123689999999999999998 89999988888875 5799999999953
No 108
>PRK05778 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Validated
Probab=99.51 E-value=1.4e-13 Score=133.19 Aligned_cols=136 Identities=17% Similarity=0.168 Sum_probs=98.3
Q ss_pred ccccCccHHHHHHHHHhhhcCCCceeEEEeCcccc-CcchHHHHHHHHHHcCCCEEEEEEcCC-cceeeecc--------
Q 016909 143 STIATQLPHAVGAAYALKMDRKDACAVTYFGDGGT-SEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPIS-------- 212 (380)
Q Consensus 143 g~lG~~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~-~eG~~~Eal~~A~~~~Lpvi~vv~NN~-~~i~~~~~-------- 212 (380)
+++|.++|+|+|+++| .+++.||++.|||++ +.| ...|.+|+++++|+++||.||+ |++.....
T Consensus 70 g~mG~alpaAiGaklA----~pd~~VV~i~GDG~~~~mg--~~eL~tA~r~nl~i~vIV~NN~~YG~t~gQ~s~t~~~g~ 143 (301)
T PRK05778 70 TLHGRAIAFATGAKLA----NPDLEVIVVGGDGDLASIG--GGHFIHAGRRNIDITVIVENNGIYGLTKGQASPTTPEGS 143 (301)
T ss_pred hhhccHHHHHHHHHHH----CCCCcEEEEeCccHHHhcc--HHHHHHHHHHCCCcEEEEEeCchhhcccCcccCCcCCCc
Confidence 6789999999999988 478899999999997 455 3458899999999888777775 55543211
Q ss_pred --------cccCCcCHHHHHhhcCeeEE-EEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCCCCCCCCCCCCCCC
Q 016909 213 --------DQFRSDGAVVKGRAYGVRSI-RVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDDSTKYRP 283 (380)
Q Consensus 213 --------~~~~~~~~~~~a~a~G~~~~-~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R~~gHs~~Dd~~~Yr~ 283 (380)
......|+.+.|+++|+.++ ++.-.++.++.+++++|++ .+||+||++.+--...+ .-....++
T Consensus 144 ~~~~~~~g~~~~~~d~~~lA~a~G~~~va~~~v~~~~eL~~ai~~A~~----~~GpalIeV~~~C~~~~---~~~~~~~~ 216 (301)
T PRK05778 144 KTKTAPYGNIEPPIDPCALALAAGATFVARSFAGDVKQLVELIKKAIS----HKGFAFIDVLSPCVTFN---GRNTSTKS 216 (301)
T ss_pred ccccccCCCcCCCCCHHHHHHHCCCCEEEEeccCCHHHHHHHHHHHHh----CCCCEEEEEcCCCCCCC---CcCCcccC
Confidence 00123589999999999986 3344489999999999886 48999999876322211 11223456
Q ss_pred hhHHHHHH
Q 016909 284 VDEIEWWR 291 (380)
Q Consensus 284 ~~e~~~~~ 291 (380)
+.++.+|-
T Consensus 217 ~~~~~~~~ 224 (301)
T PRK05778 217 PAYMREYY 224 (301)
T ss_pred HHHHHHHH
Confidence 66666663
No 109
>PRK09628 oorB 2-oxoglutarate-acceptor oxidoreductase subunit OorB; Reviewed
Probab=99.51 E-value=7.9e-14 Score=133.57 Aligned_cols=114 Identities=15% Similarity=0.063 Sum_probs=86.9
Q ss_pred ccccCccHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCC-cceeeeccc--------
Q 016909 143 STIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPISD-------- 213 (380)
Q Consensus 143 g~lG~~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~-~~i~~~~~~-------- 213 (380)
+++|.++|.|+|+++|. +++.||++.|||+++. +.-..+.+|+++++|+++||.||+ |++......
T Consensus 68 ~~~G~alPaAiGaklA~----Pdr~VV~i~GDG~f~~-~g~~el~ta~r~nlpi~iIV~NN~~yGmt~~Q~~~~t~~g~~ 142 (277)
T PRK09628 68 TTHGRAVAYATGIKLAN----PDKHVIVVSGDGDGLA-IGGNHTIHGCRRNIDLNFILINNFIYGLTNSQTSPTTPKGMW 142 (277)
T ss_pred eccccHHHHHHHHHHHC----CCCeEEEEECchHHHH-hhHHHHHHHHHhCcCeEEEEEEChHHhcceecccCCCCCCce
Confidence 47899999999999884 7899999999999853 112346679999999888777775 665331110
Q ss_pred --------ccCCcCHHHHHhhcCeeEE---EEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEee
Q 016909 214 --------QFRSDGAVVKGRAYGVRSI---RVDGNDALAIYSAVHAAREMAIGEGRPILIEALTY 267 (380)
Q Consensus 214 --------~~~~~~~~~~a~a~G~~~~---~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~ 267 (380)
..+..|+++.|+++|++++ +|. ++.++.+++++|++ .+||+|||+.+.
T Consensus 143 ~~~~~~g~~~~~~D~~~lA~a~G~~~va~~~v~--~~~el~~al~~Al~----~~Gp~lIeV~~~ 201 (277)
T PRK09628 143 TVTAQYGNIDPTFDACKLATAAGASFVARESVI--DPQKLEKLLVKGFS----HKGFSFFDVFSN 201 (277)
T ss_pred eeeccCCCcCCCCCHHHHHHHCCCceEEEEccC--CHHHHHHHHHHHHh----CCCCEEEEEcCC
Confidence 0122377999999999975 565 99999999999986 489999999763
No 110
>TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type. Several isozymes of this enzyme are found in E. coli K12, one of which contains a frameshift in the large subunit gene and is not expressed.
Probab=99.51 E-value=7.8e-14 Score=146.45 Aligned_cols=115 Identities=21% Similarity=0.323 Sum_probs=93.0
Q ss_pred cccccCccHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCc-ceee---------e-
Q 016909 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGW-AIST---------P- 210 (380)
Q Consensus 142 ~g~lG~~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~-~i~~---------~- 210 (380)
.|++|+++|.|+|+++|. +++.|||++|||+|++.. .+|.+|.+++||+++||.||+. ++.. .
T Consensus 411 ~g~mG~~l~aaiGa~la~----~~~~vv~~~GDG~f~~~~--~eL~ta~~~~l~~~~vv~NN~~~~~~~~~q~~~~~~~~ 484 (558)
T TIGR00118 411 LGTMGFGLPAAIGAKVAK----PESTVICITGDGSFQMNL--QELSTAVQYDIPVKILILNNRYLGMVRQWQELFYEERY 484 (558)
T ss_pred cccccchhhHHHhhhhhC----CCCcEEEEEcchHHhccH--HHHHHHHHhCCCeEEEEEeCCchHHHHHHHHHhcCCce
Confidence 488999999999998884 678999999999998743 4699999999998888888873 4321 0
Q ss_pred -cccccCCcCHHHHHhhcCeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeec
Q 016909 211 -ISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 268 (380)
Q Consensus 211 -~~~~~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R 268 (380)
........|+.+++++||+++++|+ +++++.++++++++ .++|+|||+.+.+
T Consensus 485 ~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~~l~~al~~a~~----~~~p~liev~~~~ 537 (558)
T TIGR00118 485 SHTHMGSLPDFVKLAEAYGIKGIRIE--KPEELDEKLKEALS----SNEPVLLDVVVDK 537 (558)
T ss_pred eeccCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHh----CCCCEEEEEEeCC
Confidence 0011124689999999999999999 78999999998886 3799999999954
No 111
>PRK06048 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=99.50 E-value=1.5e-13 Score=144.40 Aligned_cols=115 Identities=25% Similarity=0.346 Sum_probs=93.1
Q ss_pred cccccCccHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCC-cceeee---------c
Q 016909 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTP---------I 211 (380)
Q Consensus 142 ~g~lG~~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~-~~i~~~---------~ 211 (380)
.|+||+++|.|+|+++|. +++.|||++|||+|+.. ..+|.+|.+++||+++||.||+ |++... .
T Consensus 413 ~g~mG~glpaaiGa~la~----p~~~Vv~i~GDG~f~m~--~~eL~Ta~~~~l~i~~vV~NN~~y~~i~~~~~~~~~~~~ 486 (561)
T PRK06048 413 LGTMGYGFPAAIGAKVGK----PDKTVIDIAGDGSFQMN--SQELATAVQNDIPVIVAILNNGYLGMVRQWQELFYDKRY 486 (561)
T ss_pred ccccccHHHHHHHHHHhC----CCCcEEEEEeCchhhcc--HHHHHHHHHcCCCeEEEEEECCccHHHHHHHHHHcCCcc
Confidence 489999999999999984 67899999999999865 3669999999999777766664 654321 0
Q ss_pred ccc--cCCcCHHHHHhhcCeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeec
Q 016909 212 SDQ--FRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 268 (380)
Q Consensus 212 ~~~--~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R 268 (380)
... ....|+.+.|++||+++++|+ ++.++.+++++|++ .++|+|||+.+.+
T Consensus 487 ~~~~~~~~~d~~~lA~a~G~~~~~v~--t~~el~~al~~a~~----~~~p~liev~~~~ 539 (561)
T PRK06048 487 SHTCIKGSVDFVKLAEAYGALGLRVE--KPSEVRPAIEEAVA----SDRPVVIDFIVEC 539 (561)
T ss_pred cccCCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHh----CCCCEEEEEEecC
Confidence 001 134689999999999999998 89999999999875 4799999999954
No 112
>PRK08611 pyruvate oxidase; Provisional
Probab=99.50 E-value=1.1e-13 Score=145.75 Aligned_cols=115 Identities=23% Similarity=0.273 Sum_probs=92.8
Q ss_pred cccccCccHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcC-Ccceeeec---------
Q 016909 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN-GWAISTPI--------- 211 (380)
Q Consensus 142 ~g~lG~~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN-~~~i~~~~--------- 211 (380)
.|+||+++|.|+|+++|. +++.||+++|||+|++. ..+|.+|++++||+++||.|| +|++....
T Consensus 407 ~g~mG~glpaaiGa~la~----p~~~Vv~i~GDGsf~m~--~~eL~Ta~r~~l~~iivV~NN~~~g~i~~~q~~~~~~~~ 480 (576)
T PRK08611 407 LGTMGCGLPGAIAAKIAF----PDRQAIAICGDGGFSMV--MQDFVTAVKYKLPIVVVVLNNQQLAFIKYEQQAAGELEY 480 (576)
T ss_pred chhhhhhHHHHHHHHHhC----CCCcEEEEEcccHHhhh--HHHHHHHHHhCCCeEEEEEeCCcchHHHHHHHHhcCCcc
Confidence 589999999999999874 67899999999999864 467999999999976666555 56643110
Q ss_pred ccccCCcCHHHHHhhcCeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeec
Q 016909 212 SDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 268 (380)
Q Consensus 212 ~~~~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R 268 (380)
.......|+++.|++||+++++|+ +++++..+++++++ .++|+|||+.+.+
T Consensus 481 ~~~~~~~d~~~lA~a~G~~~~~v~--~~~eL~~al~~a~~----~~~p~lIeV~vd~ 531 (576)
T PRK08611 481 AIDLSDMDYAKFAEACGGKGYRVE--KAEELDPAFEEALA----QDKPVIIDVYVDP 531 (576)
T ss_pred cccCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHh----CCCCEEEEEEeCC
Confidence 111234689999999999999998 99999999998875 4899999999965
No 113
>PLN02470 acetolactate synthase
Probab=99.50 E-value=1.7e-13 Score=144.60 Aligned_cols=115 Identities=21% Similarity=0.216 Sum_probs=92.5
Q ss_pred cccccCccHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCC-cceeee---------c
Q 016909 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTP---------I 211 (380)
Q Consensus 142 ~g~lG~~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~-~~i~~~---------~ 211 (380)
.|+||+++|.|+|+++|. +++.|||++|||+|++. ..+|.+|.+++||+++||.||+ |++... .
T Consensus 425 ~g~mG~glpaaiGa~la~----p~~~Vv~i~GDG~f~m~--~~eL~Ta~~~~l~v~ivV~NN~~yg~i~~~~~~~~~~~~ 498 (585)
T PLN02470 425 LGAMGFGLPAAIGAAAAN----PDAIVVDIDGDGSFIMN--IQELATIHVENLPVKIMVLNNQHLGMVVQWEDRFYKANR 498 (585)
T ss_pred cccccchHHHHHHHHHhC----CCCcEEEEEccchhhcc--HHHHHHHHHhCCCeEEEEEeCCcchHHHHHHHHHhCCce
Confidence 589999999999999984 67899999999999865 3679999999999777766664 553210 0
Q ss_pred c-ccc--------CCcCHHHHHhhcCeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeec
Q 016909 212 S-DQF--------RSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 268 (380)
Q Consensus 212 ~-~~~--------~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R 268 (380)
. ... ...|+.+.|++||+++.+|+ +++++.++++++++ .++|+|||+.+.+
T Consensus 499 ~~~~~~~~~~~~~~~~d~~~iA~a~G~~~~~v~--~~~el~~al~~a~~----~~~p~lieV~i~~ 558 (585)
T PLN02470 499 AHTYLGDPDAEAEIFPDFLKFAEGCKIPAARVT--RKSDLREAIQKMLD----TPGPYLLDVIVPH 558 (585)
T ss_pred eeeecCccccccCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHh----CCCCEEEEEEeCC
Confidence 0 000 02589999999999999998 99999999999876 4789999999954
No 114
>TIGR03394 indol_phenyl_DC indolepyruvate/phenylpyruvate decarboxylase, Azospirillum family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. This model represents a clade that includes a Azospirillum brasilense member active as both phenylpyruvate decarboxylase and indolepyruvate decarboxylase.
Probab=99.50 E-value=1e-13 Score=144.82 Aligned_cols=114 Identities=21% Similarity=0.218 Sum_probs=90.6
Q ss_pred ccccccCccHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcC-Ccceeeecc-----cc
Q 016909 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN-GWAISTPIS-----DQ 214 (380)
Q Consensus 141 ~~g~lG~~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN-~~~i~~~~~-----~~ 214 (380)
..|+||+++|.|+|+++|. ++++|+++|||+|++ ...+|.+|.+++||+++||.|| +|++..... ..
T Consensus 401 ~~g~mG~glpaaiGa~lA~-----~~r~v~i~GDG~f~m--~~~EL~Ta~r~~lpv~~vV~NN~~y~~~~~~~~~~~~~~ 473 (535)
T TIGR03394 401 YYAGMGFGVPAGIGAQCTS-----GKRILTLVGDGAFQM--TGWELGNCRRLGIDPIVILFNNASWEMLRVFQPESAFND 473 (535)
T ss_pred ccchhhhHHHHHHHHHhCC-----CCCeEEEEeChHHHh--HHHHHHHHHHcCCCcEEEEEECCccceeehhccCCCccc
Confidence 3589999999999999984 345688999999985 4567999999999977666555 577643221 11
Q ss_pred cCCcCHHHHHhhcCeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEe
Q 016909 215 FRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALT 266 (380)
Q Consensus 215 ~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t 266 (380)
+...|+++.|++||+++.+|+ +++++..++++|++. .++|+|||+.+
T Consensus 474 ~~~~d~~~lA~a~G~~~~~v~--~~~eL~~al~~a~~~---~~~p~lIev~i 520 (535)
T TIGR03394 474 LDDWRFADMAAGMGGDGVRVR--TRAELAAALDKAFAT---RGRFQLIEAML 520 (535)
T ss_pred CCCCCHHHHHHHcCCCceEeC--CHHHHHHHHHHHHhc---CCCeEEEEEEC
Confidence 235689999999999999999 999999999998863 35689999987
No 115
>PRK06456 acetolactate synthase catalytic subunit; Reviewed
Probab=99.49 E-value=1.5e-13 Score=144.63 Aligned_cols=116 Identities=23% Similarity=0.251 Sum_probs=94.1
Q ss_pred ccccccCccHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCC-cceeeecc-------
Q 016909 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPIS------- 212 (380)
Q Consensus 141 ~~g~lG~~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~-~~i~~~~~------- 212 (380)
..|+||+++|.|+|+++|. +++.||+++|||+|+.. ..+|.+|.+++||+++||.||+ |++.....
T Consensus 419 ~~g~mG~glpaAiGa~la~----p~~~vv~i~GDG~f~m~--~~eL~Ta~~~~l~i~ivV~NN~~yg~i~~~q~~~~~~~ 492 (572)
T PRK06456 419 GMGTMGFGLPAAMGAKLAR----PDKVVVDLDGDGSFLMT--GTNLATAVDEHIPVISVIFDNRTLGLVRQVQDLFFGKR 492 (572)
T ss_pred CcccccchhHHHHHHHHhC----CCCeEEEEEccchHhcc--hHHHHHHHHhCCCeEEEEEECCchHHHHHHHHHhhCCC
Confidence 3589999999999999984 67899999999999865 3669999999999777776665 66542110
Q ss_pred ---ccc-CCcCHHHHHhhcCeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeec
Q 016909 213 ---DQF-RSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 268 (380)
Q Consensus 213 ---~~~-~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R 268 (380)
... ...|+++.|++||+++++|+ +++++.+++++|.+ .++|+|||+.+.+
T Consensus 493 ~~~~~~~~~~d~~~~A~a~G~~~~~v~--~~~eL~~al~~a~~----~~~p~lIev~v~~ 546 (572)
T PRK06456 493 IVGVDYGPSPDFVKLAEAFGALGFNVT--TYEDIEKSLKSAIK----EDIPAVIRVPVDK 546 (572)
T ss_pred cccccCCCCCCHHHHHHHCCCeeEEeC--CHHHHHHHHHHHHh----CCCCEEEEEEeCc
Confidence 011 24689999999999999998 99999999988875 4799999999965
No 116
>PRK09259 putative oxalyl-CoA decarboxylase; Validated
Probab=99.49 E-value=1.5e-13 Score=144.68 Aligned_cols=115 Identities=18% Similarity=0.125 Sum_probs=92.8
Q ss_pred ccccccCccHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCC-c--cee----e--ec
Q 016909 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-W--AIS----T--PI 211 (380)
Q Consensus 141 ~~g~lG~~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~-~--~i~----~--~~ 211 (380)
..|+||+++|.|+|+++| +++.|||++|||+|++. ..+|.+|.+++||+++||.||+ | ... . ..
T Consensus 422 ~~gsmG~glpaaiGa~la-----~~~~vv~i~GDG~f~m~--~~EL~Ta~r~~lpi~~vV~NN~~~~~~~~~~~~~~~~~ 494 (569)
T PRK09259 422 TWGVMGIGMGYAIAAAVE-----TGKPVVAIEGDSAFGFS--GMEVETICRYNLPVTVVIFNNGGIYRGDDVNLSGAGDP 494 (569)
T ss_pred CCccccccHHHHHHHHhc-----CCCcEEEEecCcccccc--HHHHHHHHHcCCCEEEEEEeChhHHHHHHHHhhcCCCc
Confidence 358999999999999998 26789999999999864 3569999999999999888887 3 110 0 00
Q ss_pred c-cc-cCCcCHHHHHhhcCeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeec
Q 016909 212 S-DQ-FRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 268 (380)
Q Consensus 212 ~-~~-~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R 268 (380)
. .. .+..|+++.|++||+++++|+ +++++.+++++|++ .++|+|||+.+.+
T Consensus 495 ~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~el~~al~~a~~----~~~p~lIev~id~ 547 (569)
T PRK09259 495 SPTVLVHHARYDKMMEAFGGVGYNVT--TPDELRHALTEAIA----SGKPTLINVVIDP 547 (569)
T ss_pred cccccCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHh----CCCCEEEEEEECC
Confidence 0 11 135689999999999999998 99999999999875 4799999999853
No 117
>PRK08978 acetolactate synthase 2 catalytic subunit; Reviewed
Probab=99.49 E-value=2e-13 Score=143.04 Aligned_cols=115 Identities=19% Similarity=0.235 Sum_probs=92.8
Q ss_pred cccccCccHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcC-Ccceeeec---------
Q 016909 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN-GWAISTPI--------- 211 (380)
Q Consensus 142 ~g~lG~~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN-~~~i~~~~--------- 211 (380)
.|+||+++|.|+|+++|. +++.|||++|||+|++. ..+|.+|.++++|+++||.|| +|++....
T Consensus 400 ~g~mG~glpaAiGa~la~----p~~~vv~i~GDG~f~~~--~~eL~ta~~~~l~v~ivV~NN~~~~~~~~~~~~~~~~~~ 473 (548)
T PRK08978 400 LGTMGFGLPAAIGAQVAR----PDDTVICVSGDGSFMMN--VQELGTIKRKQLPVKIVLLDNQRLGMVRQWQQLFFDERY 473 (548)
T ss_pred hhhhhchHHHHHHHHHhC----CCCcEEEEEccchhhcc--HHHHHHHHHhCCCeEEEEEeCCccHHHHHHHHHHhCCcc
Confidence 489999999999999884 67899999999999864 366999999999977766655 46543210
Q ss_pred c-ccc-CCcCHHHHHhhcCeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeec
Q 016909 212 S-DQF-RSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 268 (380)
Q Consensus 212 ~-~~~-~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R 268 (380)
. ... ...|+++.|++||+++.+|+ +++++.++++++++ .++|+|||+.+.+
T Consensus 474 ~~~~~~~~~d~~~la~a~G~~~~~v~--~~~el~~al~~a~~----~~~p~lIeV~id~ 526 (548)
T PRK08978 474 SETDLSDNPDFVMLASAFGIPGQTIT--RKDQVEAALDTLLN----SEGPYLLHVSIDE 526 (548)
T ss_pred eecCCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHh----CCCCEEEEEEecC
Confidence 0 011 24689999999999999998 99999999998875 4799999999965
No 118
>COG2609 AceE Pyruvate dehydrogenase complex, dehydrogenase (E1) component [Energy production and conversion]
Probab=99.49 E-value=5.6e-12 Score=129.82 Aligned_cols=268 Identities=17% Similarity=0.177 Sum_probs=176.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc-CCcccccccchhHH--HHHHHHhcCCCC------cEEEc-cccchHH---HH
Q 016909 35 EGVAIKMYNDMVTLQTMDTIFYEAQRQ-GRISFYLTTSGEEA--INIASAAAIKND------DFVVP-QYREPGV---LL 101 (380)
Q Consensus 35 ~~~l~~~y~~M~~~R~~e~~~~~~~~~-g~i~~~~~~~GqEa--~~~~~~~~l~~~------D~v~~-~yR~~~~---~l 101 (380)
+.++.+-+|+.++=...-..+ ...+. .++|-++.+...-| --++....+++. |.|+- .|-..+. ..
T Consensus 74 d~~lErrir~~irWna~a~vl-Raskk~l~lGGH~aSfaSsatlyev~fnhffr~~~~~~ggDlV~~qgHaSPg~yAraf 152 (887)
T COG2609 74 DLELERRIRSLIRWNAHAMVL-RASKKGLELGGHIASFASSATLYEVGFNHFFRAKSEKDGGDLVFFQGHASPGIYARAF 152 (887)
T ss_pred cHHHHHHHHHHHHHHHHHHHH-HccCCCCCccchhhhhhhHHHHHHHHHHHHhcCcCCCCCCceEEEecCCCchHHHHHH
Confidence 345555566555555552222 22222 23433333222112 223445566654 98886 3554443 33
Q ss_pred HcCCCHHHHHHHhhcCCCCCCCCCCCccccCCCC-CC-cccccccccCccHHHHHHHHHhhhc-------CCCceeEEEe
Q 016909 102 WRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNK-HN-YFTVSSTIATQLPHAVGAAYALKMD-------RKDACAVTYF 172 (380)
Q Consensus 102 ~~G~~~~~~l~e~~g~~~~~~~G~~~~~H~~~~~-~~-~~~~~g~lG~~~p~AvG~A~A~k~~-------~~~~~vv~~~ 172 (380)
.-|...++-|..|++-. .|.++++.+.... +. ....+++||-|...|+=.|+-.|+- .++++|+||+
T Consensus 153 LeGRlseeqLdnFRqev----~g~gl~SYPhp~lmpdfwqFpTvSmGLGp~~aiyqArf~kYL~~RGl~~~~~~~v~afL 228 (887)
T COG2609 153 LEGRLTEEQLDNFRQEV----DGKGLSSYPHPKLMPDFWQFPTVSMGLGPIQAIYQARFLKYLEARGLKDTSDQKVWAFL 228 (887)
T ss_pred HhccccHHHHHHHHHhc----cCCCCCCCCCCcCCccccccCcccccccHHHHHHHHHHHHHHHhcCCcCCCCCeEEEEe
Confidence 46877777788777643 3667776665432 23 3446899999999999999888863 4678999999
Q ss_pred CccccCcchHHHHHHHHHHcCC-CEEEEEEcCCcceeeecccccC-CcCHHHHHhhcCeeEE------------------
Q 016909 173 GDGGTSEGDFHAALNFSAVTEA-PVIFICRNNGWAISTPISDQFR-SDGAVVKGRAYGVRSI------------------ 232 (380)
Q Consensus 173 GDG~~~eG~~~Eal~~A~~~~L-pvi~vv~NN~~~i~~~~~~~~~-~~~~~~~a~a~G~~~~------------------ 232 (380)
|||++.|+...+++.+|++++| |+||||+.|....++|+..... ...+...+++.||.++
T Consensus 229 GDgEmDEpes~gAi~~A~re~LdNlifVincNlQrLDgpVrgngkiiqelE~~FrgAGW~VikviWg~~wd~ll~kd~~g 308 (887)
T COG2609 229 GDGEMDEPESRGAITEAAREKLDNLIFVINCNLQRLDGPVRGNGKIIQELEGIFRGAGWNVIKVIWGRRWDELLAKDTGG 308 (887)
T ss_pred cCcccCCchhhHHHHHHHHhcCCceEEEEecchhhcCCcccCCchhHHHHHHHhccCCceEEEEEecccHHHHhcccCcc
Confidence 9999999999999999999999 9999999999988888754311 1245667788888887
Q ss_pred ---------------------------------------------------EEeCCCHHHHHHHHHHHHHHhhccCCcEE
Q 016909 233 ---------------------------------------------------RVDGNDALAIYSAVHAAREMAIGEGRPIL 261 (380)
Q Consensus 233 ---------------------------------------------------~VdG~D~~av~~a~~~A~~~ar~~~gP~l 261 (380)
.--|||+..|++|+++|.++ .++|++
T Consensus 309 kL~~~m~e~~dgdyqt~kakdGayvRehff~~~Pe~~aLVa~~tD~diw~L~rGGHD~~ki~aA~~~A~~~---kg~Ptv 385 (887)
T COG2609 309 KLRQLMNETVDGDYQTFKAKDGAYVREHFFGRYPETAALVADMTDDDIWALNRGGHDPEKVYAAFKKAQEH---KGRPTV 385 (887)
T ss_pred hHHHHHHhcccchhhhhcccccHHHHHHHhccChHHHHHHHhccHHHHHHHhcCCCCHHHHHHHHHHHhcC---CCCceE
Confidence 12389999999999999986 469999
Q ss_pred EEEEeecCCCCCCCCCCCCCCChhHHHHHHhCCChHHHHHHHHHHCC-CCCHHHHHH
Q 016909 262 IEALTYRVGHHTTSDDSTKYRPVDEIEWWRTTQDPVTRFRKWIESNG-WWNGDIESE 317 (380)
Q Consensus 262 Ie~~t~R~~gHs~~Dd~~~Yr~~~e~~~~~~~~DPi~~~~~~L~~~g-~~t~~~~~~ 317 (380)
|.++|.+.+|--.+-.. -...-..+.+ ..|-|..+|.++ | .++++|+++
T Consensus 386 ilA~TIKGyglg~~~eg--~n~aHq~kkm--~~~~l~~~Rdr~---~ipvsd~e~e~ 435 (887)
T COG2609 386 ILAKTIKGYGLGEAAEG--KNIAHQVKKM--TPDQLKEFRDRF---GIPVSDAELEE 435 (887)
T ss_pred EEEeeeccccCchhhcc--cchhhhhhcC--CHHHHHHHHhhc---CCCCchhhhhc
Confidence 99999888764321111 0111122222 245577788876 3 357777766
No 119
>PRK11869 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional
Probab=99.46 E-value=3.6e-13 Score=129.00 Aligned_cols=115 Identities=11% Similarity=0.100 Sum_probs=89.7
Q ss_pred ccccCccHHHHHHHHHhhhcCCCceeEEEeCccccC-cchHHHHHHHHHHcCCCEEEEEEcCC-cceeeecc--------
Q 016909 143 STIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTS-EGDFHAALNFSAVTEAPVIFICRNNG-WAISTPIS-------- 212 (380)
Q Consensus 143 g~lG~~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~-eG~~~Eal~~A~~~~Lpvi~vv~NN~-~~i~~~~~-------- 212 (380)
+.+|.++|.|+|+++| ++++.||++.|||++. .| ...|.+|+++++|+++||.||+ |++...+.
T Consensus 60 ~~mG~alp~AiGaklA----~pd~~VVai~GDG~~~~iG--~~eL~tA~r~nl~i~~IV~NN~~Yg~t~~Q~s~~t~~g~ 133 (280)
T PRK11869 60 TLHGRAIPAATAVKAT----NPELTVIAEGGDGDMYAEG--GNHLIHAIRRNPDITVLVHNNQVYGLTKGQASPTTLKGF 133 (280)
T ss_pred cccccHHHHHHHHHHH----CCCCcEEEEECchHHhhCc--HHHHHHHHHhCcCcEEEEEECHHHhhhcceecCCCCCCc
Confidence 5589999999999887 4788999999999986 33 3559999999999888887776 55432111
Q ss_pred --------cccCCcCHHHHHhhcCeeEEEE-eCCCHHHHHHHHHHHHHHhhccCCcEEEEEEee
Q 016909 213 --------DQFRSDGAVVKGRAYGVRSIRV-DGNDALAIYSAVHAAREMAIGEGRPILIEALTY 267 (380)
Q Consensus 213 --------~~~~~~~~~~~a~a~G~~~~~V-dG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~ 267 (380)
......|+.++|+++|++++.. +-.++.++.+++++|++ .+||+||++.+.
T Consensus 134 ~~~~~p~g~~~~~~D~~~lA~a~G~~~va~~~~~~~~~l~~~i~~Al~----~~Gp~lIeV~~p 193 (280)
T PRK11869 134 KTPTQPWGVFEEPFNPIALAIALDASFVARTFSGDIEETKEILKEAIK----HKGLAIVDIFQP 193 (280)
T ss_pred ccccCCCCccCCCCCHHHHHHHCCCCEEEEeCCCCHHHHHHHHHHHHh----CCCCEEEEEECC
Confidence 0112358999999999998873 24499999999999997 489999999873
No 120
>PRK06276 acetolactate synthase catalytic subunit; Reviewed
Probab=99.46 E-value=4.1e-13 Score=141.81 Aligned_cols=115 Identities=26% Similarity=0.348 Sum_probs=92.7
Q ss_pred cccccCccHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCC-cceeeec---------
Q 016909 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPI--------- 211 (380)
Q Consensus 142 ~g~lG~~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~-~~i~~~~--------- 211 (380)
.|+||+++|.|+|+++|. +++.|||++|||+|+.. ..+|.+|.+++||+++||.||+ |++....
T Consensus 418 ~gsmG~~lpaaiGa~la~----p~~~Vv~i~GDGsf~m~--~~eL~Ta~~~~lpv~~vV~NN~~~g~~~~~~~~~~~~~~ 491 (586)
T PRK06276 418 LGTMGFGFPAAIGAKVAK----PDANVIAITGDGGFLMN--SQELATIAEYDIPVVICIFDNRTLGMVYQWQNLYYGKRQ 491 (586)
T ss_pred ccccccchhHHHhhhhhc----CCCcEEEEEcchHhhcc--HHHHHHHHHhCCCeEEEEEeCCchHHHHHHHHHHhCCCc
Confidence 479999999999999984 67889999999999865 3569999999999877776665 6543211
Q ss_pred ccc-c-CCcCHHHHHhhcCeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeec
Q 016909 212 SDQ-F-RSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 268 (380)
Q Consensus 212 ~~~-~-~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R 268 (380)
... . ...|+.+.+++||+++++|+ +++++.++++++++ .++|+|||+.+.+
T Consensus 492 ~~~~~~~~~d~~~la~a~G~~~~~v~--~~~el~~al~~a~~----~~~p~lIeV~i~~ 544 (586)
T PRK06276 492 SEVHLGETPDFVKLAESYGVKADRVE--KPDEIKEALKEAIK----SGEPYLLDIIIDP 544 (586)
T ss_pred ccccCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHh----CCCCEEEEEEecc
Confidence 001 1 24689999999999999998 99999999998875 4799999999854
No 121
>PRK07282 acetolactate synthase catalytic subunit; Reviewed
Probab=99.46 E-value=2.4e-13 Score=142.96 Aligned_cols=115 Identities=23% Similarity=0.360 Sum_probs=90.5
Q ss_pred ccccccCccHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcC-Ccceeeec--------
Q 016909 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN-GWAISTPI-------- 211 (380)
Q Consensus 141 ~~g~lG~~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN-~~~i~~~~-------- 211 (380)
..|+||+++|.|+|+++|. +++.||+++|||+|++. ..+|.+|.+++||+++||.|| +|++....
T Consensus 416 ~~g~mG~glpaaiGa~lA~----p~~~Vv~i~GDG~f~m~--~~eL~Ta~~~~l~i~~vV~NN~~y~~i~~~q~~~~~~~ 489 (566)
T PRK07282 416 GLGTMGFGIPAAIGAKIAN----PDKEVILFVGDGGFQMT--NQELAILNIYKVPIKVVMLNNHSLGMVRQWQESFYEGR 489 (566)
T ss_pred ccccccchhhHhheeheec----CCCcEEEEEcchhhhcc--HHHHHHHHHhCCCeEEEEEeCCCchHHHHHHHHHhCCC
Confidence 3589999999999998884 68899999999999864 366999999999977766555 46653211
Q ss_pred -c-ccc-CCcCHHHHHhhcCeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeec
Q 016909 212 -S-DQF-RSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 268 (380)
Q Consensus 212 -~-~~~-~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R 268 (380)
. ..+ ...|+++.|++||+++.+|+ ++.++.++++ +.. .++|+|||+.+.+
T Consensus 490 ~~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~el~~al~-~~~----~~~p~lIeV~v~~ 542 (566)
T PRK07282 490 TSESVFDTLPDFQLMAQAYGIKHYKFD--NPETLAQDLE-VIT----EDVPMLIEVDISR 542 (566)
T ss_pred cccccCCCCCCHHHHHHHCCCEEEEEC--CHHHHHHHHH-Hhc----CCCCEEEEEEeCC
Confidence 1 111 34689999999999999998 8999988886 332 4799999999965
No 122
>PRK07789 acetolactate synthase 1 catalytic subunit; Validated
Probab=99.45 E-value=2.3e-13 Score=144.46 Aligned_cols=116 Identities=23% Similarity=0.326 Sum_probs=92.5
Q ss_pred cccccCccHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCC-cceeeec---------
Q 016909 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPI--------- 211 (380)
Q Consensus 142 ~g~lG~~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~-~~i~~~~--------- 211 (380)
.|+||+++|.|+|+++|. +++.|+|++|||+|+.. ..+|.+|++++||+++||.||+ |++....
T Consensus 446 ~G~mG~glpaaiGa~la~----p~~~Vv~i~GDG~f~m~--~~eL~Ta~~~~lpv~ivV~NN~~~g~i~~~q~~~~~~~~ 519 (612)
T PRK07789 446 LGTMGYAVPAAMGAKVGR----PDKEVWAIDGDGCFQMT--NQELATCAIEGIPIKVALINNGNLGMVRQWQTLFYEERY 519 (612)
T ss_pred cccccchhhhHHhhhccC----CCCcEEEEEcchhhhcc--HHHHHHHHHcCCCeEEEEEECCchHHHHHHHHHhhCCCc
Confidence 478999999999999884 67899999999999854 4679999999999777666554 7643210
Q ss_pred c-ccc-----CCcCHHHHHhhcCeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeec
Q 016909 212 S-DQF-----RSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 268 (380)
Q Consensus 212 ~-~~~-----~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R 268 (380)
. ... ...|+++.|++||+++.+|+ +++++..++++|++. .++|+|||+.+.+
T Consensus 520 ~~~~~~~~~~~~~d~~~lA~a~G~~~~~V~--~~~eL~~al~~a~~~---~~~p~lIev~i~~ 577 (612)
T PRK07789 520 SNTDLHTHSHRIPDFVKLAEAYGCVGLRCE--REEDVDAVIEKARAI---NDRPVVIDFVVGK 577 (612)
T ss_pred ceeecCcCCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHhc---CCCcEEEEEEECC
Confidence 0 000 12589999999999999998 999999999998863 3689999999954
No 123
>TIGR02177 PorB_KorB 2-oxoacid:acceptor oxidoreductase, beta subunit, pyruvate/2-ketoisovalerate family. Several related four-subunit enzymes may exist in the same species. This model describes a subfamily of beta subunits, representing mostly pyruvate and 2-ketoisovalerate specific enzymes.
Probab=99.44 E-value=2.1e-12 Score=124.13 Aligned_cols=113 Identities=14% Similarity=0.149 Sum_probs=84.9
Q ss_pred ccccCccHHHHHHHHHhhhcCCCceeEEEeCccccC-cchHHHHHHHHHHcCCCEEEEEEcCC-cceeeecccc------
Q 016909 143 STIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTS-EGDFHAALNFSAVTEAPVIFICRNNG-WAISTPISDQ------ 214 (380)
Q Consensus 143 g~lG~~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~-eG~~~Eal~~A~~~~Lpvi~vv~NN~-~~i~~~~~~~------ 214 (380)
+.+|.++|+|+|+++| .+++.|||+.|||++. .| ...|.+|+++++|+++||.||+ |++.......
T Consensus 53 t~mG~alPaAiGaklA----~Pd~~VVai~GDG~f~~mg--~~eL~tA~r~nl~I~vIVlNN~~yGmt~gQ~sp~t~~G~ 126 (287)
T TIGR02177 53 GLHGRALPVATGIKLA----NPHLKVIVVGGDGDLYGIG--GNHFVAAGRRNVDITVIVHDNQVYGLTKGQASPTLLKGV 126 (287)
T ss_pred cccccHHHHHHHHHHH----CCCCcEEEEeCchHHHhcc--HHHHHHHHHhCcCeEEEEEECHHHHhhhcccccCccCCc
Confidence 5579999999999887 4789999999999973 55 3559999999999888887775 5554311100
Q ss_pred -c-----------CCcCHHHHHhhcCeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEe
Q 016909 215 -F-----------RSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALT 266 (380)
Q Consensus 215 -~-----------~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t 266 (380)
. ...++..+|.++|+.+...- .++.++.+++++|++ .+||+||++.+
T Consensus 127 ~~~~~~~g~~~~~~np~~~a~A~g~g~va~~~~-~~~~eL~~ai~~Al~----~~GpslIeV~~ 185 (287)
T TIGR02177 127 KTKSLPYPNIQDPVNPLLLAIALGYTFVARGFS-GDVAHLKEIIKEAIN----HKGYALVDILQ 185 (287)
T ss_pred ceeecccCccCCCCCHHHHHHhCCCCeEEEEec-CCHHHHHHHHHHHHh----CCCCEEEEEeC
Confidence 0 02245677888887776632 489999999999986 48999999986
No 124
>PRK07449 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase; Validated
Probab=99.43 E-value=2.5e-13 Score=142.87 Aligned_cols=112 Identities=21% Similarity=0.153 Sum_probs=89.3
Q ss_pred cccccCccHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCC-cceeeec----c----
Q 016909 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPI----S---- 212 (380)
Q Consensus 142 ~g~lG~~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~-~~i~~~~----~---- 212 (380)
.+++|+++|.|+|+++| +++.|||++|||+|++.. .+|.+|+++++|+++||.||+ |++.... .
T Consensus 424 ~~~~G~~lpaaiGaala-----~~~~vv~i~GDGsf~~~~--~eL~Ta~r~~l~i~ivVlNN~g~~~~~~~~~~~~~~~~ 496 (568)
T PRK07449 424 ASGIDGLLSTAAGVARA-----SAKPTVALIGDLSFLHDL--NGLLLLKQVPAPLTIVVVNNNGGGIFSLLPQPEEEPVF 496 (568)
T ss_pred ccchhhHHHHHHHHHhc-----CCCCEEEEechHHhhcCc--HHHHhhcccCCCeEEEEEECCCCccccCCCCCCCcchh
Confidence 36799999999999987 377899999999998653 558999999999777666665 6642111 0
Q ss_pred ----cccCCcCHHHHHhhcCeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEe
Q 016909 213 ----DQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALT 266 (380)
Q Consensus 213 ----~~~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t 266 (380)
......|+++.|++||+++++|+ +++++.+++++|++ .++|+|||+.+
T Consensus 497 ~~~~~~~~~~df~~lA~a~G~~~~~V~--~~~eL~~al~~a~~----~~~p~lIev~i 548 (568)
T PRK07449 497 ERFFGTPHGVDFAHAAAMYGLEYHRPE--TWAELEEALADALP----TPGLTVIEVKT 548 (568)
T ss_pred hHhhcCCCCCCHHHHHHHcCCCccCCC--CHHHHHHHHHHHhc----CCCCEEEEEeC
Confidence 01124689999999999999998 99999999999874 47999999987
No 125
>PRK11866 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional
Probab=99.42 E-value=1.6e-12 Score=124.57 Aligned_cols=115 Identities=20% Similarity=0.251 Sum_probs=90.3
Q ss_pred cccccCccHHHHHHHHHhhhcCCCceeEEEeCcc-ccCcchHHHHHHHHHHcCCCEEEEEEcCC-cceeeecccc-----
Q 016909 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDG-GTSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPISDQ----- 214 (380)
Q Consensus 142 ~g~lG~~~p~AvG~A~A~k~~~~~~~vv~~~GDG-~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~-~~i~~~~~~~----- 214 (380)
.+.+|.++|+|+|+++| .++..||++.||| +++.|. ..|..|+++++|+++||.||+ |++...+...
T Consensus 58 ~~~~G~alp~A~GaklA----~Pd~~VV~i~GDG~~f~ig~--~eL~tA~rrn~~i~vIV~nN~~ygmtggQ~s~~t~~g 131 (279)
T PRK11866 58 HGIHGRVLPIATGVKWA----NPKLTVIGYGGDGDGYGIGL--GHLPHAARRNVDITYIVSNNQVYGLTTGQASPTTPRG 131 (279)
T ss_pred ccccccHHHHHHHHHHH----CCCCcEEEEECChHHHHccH--HHHHHHHHHCcCcEEEEEEChhhhhhcccccCCCCCC
Confidence 57789999999999998 4788999999999 688774 559999999999888887775 5554311110
Q ss_pred -----c------CCcCHHHHHhhcCeeEEE-EeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEe
Q 016909 215 -----F------RSDGAVVKGRAYGVRSIR-VDGNDALAIYSAVHAAREMAIGEGRPILIEALT 266 (380)
Q Consensus 215 -----~------~~~~~~~~a~a~G~~~~~-VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t 266 (380)
+ ...|+.+.|+++|++.+. ....++.++.+++++|++ .+||.||++..
T Consensus 132 ~~t~~t~~g~~~~~~d~~~iA~a~G~~~Va~~~~~~~~~l~~~l~~Al~----~~Gps~I~v~~ 191 (279)
T PRK11866 132 VKTKTTPDGNIEEPFNPIALALAAGATFVARGFSGDVKHLKEIIKEAIK----HKGFSFIDVLS 191 (279)
T ss_pred ceeeccCCCCCCCCCCHHHHHHHCCCCEEEEEcCCCHHHHHHHHHHHHh----CCCCEEEEEeC
Confidence 0 012899999999998664 455799999999999986 48999999976
No 126
>PRK11867 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Reviewed
Probab=99.41 E-value=1.6e-12 Score=125.29 Aligned_cols=115 Identities=17% Similarity=0.139 Sum_probs=88.3
Q ss_pred cccccCccHHHHHHHHHhhhcCCCceeEEEeCccc-cCcchHHHHHHHHHHcCCCEEEEEEcCC-cceeeeccc------
Q 016909 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGG-TSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPISD------ 213 (380)
Q Consensus 142 ~g~lG~~~p~AvG~A~A~k~~~~~~~vv~~~GDG~-~~eG~~~Eal~~A~~~~Lpvi~vv~NN~-~~i~~~~~~------ 213 (380)
.+++|.++|.|+|+++| .+++.||++.|||+ ++.|. ..|.+|+++++|+++||.||+ |++......
T Consensus 68 ~g~mG~alpaAiGaklA----~Pd~~VV~i~GDG~~f~mg~--~eL~tA~r~nl~i~vIV~NN~~yGmt~~q~s~tt~~g 141 (286)
T PRK11867 68 HTIHGRALAIATGLKLA----NPDLTVIVVTGDGDALAIGG--NHFIHALRRNIDITYILFNNQIYGLTKGQYSPTSPVG 141 (286)
T ss_pred hhhhhcHHHHHHHHHHh----CCCCcEEEEeCccHHHhCCH--HHHHHHHHhCCCcEEEEEeCHHHhhhcCccCCCCCCC
Confidence 37899999999999988 47899999999996 77664 458899999999887776665 665432110
Q ss_pred -c---------cCCcCHHHHHhhcCeeEEE-EeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEe
Q 016909 214 -Q---------FRSDGAVVKGRAYGVRSIR-VDGNDALAIYSAVHAAREMAIGEGRPILIEALT 266 (380)
Q Consensus 214 -~---------~~~~~~~~~a~a~G~~~~~-VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t 266 (380)
. ....++.++|.++|...+. +.-.++.++.+++++|++ .+||+|||+.+
T Consensus 142 ~~~~~~~~g~~~~~~d~~~lA~a~Ga~~va~~~~~~~~el~~al~~Al~----~~Gp~lIev~~ 201 (286)
T PRK11867 142 FVTKTTPYGSIEPPFNPVELALGAGATFVARGFDSDVKQLTELIKAAIN----HKGFSFVEILQ 201 (286)
T ss_pred cccccccCCCCCCCCCHHHHHHHCCCcEEEEecCCCHHHHHHHHHHHHh----CCCCEEEEEeC
Confidence 0 0124788999999998764 344589999999999986 47999999976
No 127
>TIGR03336 IOR_alpha indolepyruvate ferredoxin oxidoreductase, alpha subunit. Indolepyruvate ferredoxin oxidoreductase (IOR) is an alpha 2/beta 2 tetramer related to ketoacid oxidoreductases for pyruvate (1.2.7.1, POR), 2-ketoglutarate (1.2.7.3, KOR), and 2-oxoisovalerate (1.2.7.7, VOR). These multi-subunit enzymes typically are found in anaerobes and are inactiviated by oxygen. IOR in Pyrococcus acts in fermentation of all three aromatic amino acids, following removal of the amino group by transamination. In Methanococcus maripaludis, by contrast, IOR acts in the opposite direction, in pathways of amino acid biosynthesis from phenylacetate, indoleacetate, and p-hydroxyphenylacetate. In M. maripaludis and many other species, iorA and iorB are found next to an apparent phenylacetate-CoA ligase.
Probab=99.33 E-value=1.2e-11 Score=130.89 Aligned_cols=119 Identities=16% Similarity=0.093 Sum_probs=90.7
Q ss_pred ccccccccCccHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcC-Ccceeeeccc----
Q 016909 139 FTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN-GWAISTPISD---- 213 (380)
Q Consensus 139 ~~~~g~lG~~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN-~~~i~~~~~~---- 213 (380)
....++||.++|.|+|+++| .+++.||+++|||+|..... .+|.+|.++++|+++||.|| .|++......
T Consensus 399 ~~~~~~mG~~~~~AiGa~~a----~p~~~Vv~i~GDG~f~~~g~-~eL~tav~~~~~i~~vVlnN~~~g~~~~q~~~~~~ 473 (595)
T TIGR03336 399 VDTTLCMGASIGVASGLSKA----GEKQRIVAFIGDSTFFHTGI-PGLINAVYNKANITVVILDNRITAMTGHQPNPGTG 473 (595)
T ss_pred cceeeccCchHHHHhhhhhc----CCCCCEEEEeccchhhhcCH-HHHHHHHHcCCCeEEEEEcCcceeccCCCCCCCCC
Confidence 33468999999999999887 46789999999999974222 45888999999987777666 5766542211
Q ss_pred ------ccCCcCHHHHHhhcCeeEEEEe-CCCHHHHHHHHHHHHHHhhccCCcEEEEEEe
Q 016909 214 ------QFRSDGAVVKGRAYGVRSIRVD-GNDALAIYSAVHAAREMAIGEGRPILIEALT 266 (380)
Q Consensus 214 ------~~~~~~~~~~a~a~G~~~~~Vd-G~D~~av~~a~~~A~~~ar~~~gP~lIe~~t 266 (380)
.....|+.+.++++|+++++|. -.+..++.++++++++ .++|++|++..
T Consensus 474 ~~~~~~~~~~~d~~~ia~a~G~~~~~v~~~~~l~~l~~al~~a~~----~~gp~li~v~~ 529 (595)
T TIGR03336 474 VTGMGEATKEISIEELCRASGVEFVEVVDPLNVKETIEVFKAALA----AEGVSVIIAKQ 529 (595)
T ss_pred CCCCCCcCCCcCHHHHHHHcCCCEEEEeCcCCHHHHHHHHHHHHh----cCCCEEEEEcc
Confidence 0124689999999999999986 3455777888888875 47999999865
No 128
>COG3961 Pyruvate decarboxylase and related thiamine pyrophosphate-requiring enzymes [Carbohydrate transport and metabolism / Coenzyme metabolism / General function prediction only]
Probab=99.32 E-value=1.6e-11 Score=123.62 Aligned_cols=165 Identities=21% Similarity=0.244 Sum_probs=115.7
Q ss_pred chhHHHHHHHHhcCCCCcEEEccccchHHHHHcCCCHHHHHHHhhcCCCCCCCCCCCccccCCCCCCcccccccccCccH
Q 016909 71 SGEEAINIASAAAIKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLP 150 (380)
Q Consensus 71 ~GqEa~~~~~~~~l~~~D~v~~~yR~~~~~l~~G~~~~~~l~e~~g~~~~~~~G~~~~~H~~~~~~~~~~~~g~lG~~~p 150 (380)
+-|+-..-.++..|+++|+|+.- .| ..+||- ..+. .+.....-..+-+|++|+.+|
T Consensus 363 Ltq~~~w~~~~~fl~p~dviiae---tG-------------tS~FG~-------~~~~-lP~~~~~i~Q~lWGSIG~t~p 418 (557)
T COG3961 363 LTQEWLWNTVQNFLKPGDVIIAE---TG-------------TSFFGA-------LDIR-LPKGATFISQPLWGSIGYTLP 418 (557)
T ss_pred ccHHHHHHHHHhhCCCCCEEEEc---cc-------------cccccc-------eeee-cCCCCeEEcccchhhcccccH
Confidence 55777777888899999999863 11 113331 1110 001011112344799999999
Q ss_pred HHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCC-CEEEEEEcCCcceeeeccccc------CCcCHHHH
Q 016909 151 HAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEA-PVIFICRNNGWAISTPISDQF------RSDGAVVK 223 (380)
Q Consensus 151 ~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~L-pvi~vv~NN~~~i~~~~~~~~------~~~~~~~~ 223 (380)
.|+|+++|. +++++|+|+||||+|. .-+++.+-.+|+| |+|||++|++|.|....+... ..-++.++
T Consensus 419 AalGa~~A~----~drR~IL~iGDGs~Ql--TvQEiStmiR~gl~p~ifvlNN~GYTIEr~IHg~~~~YNdI~~Wd~~~l 492 (557)
T COG3961 419 AALGAALAA----PDRRVILFIGDGSLQL--TVQEISTMIRWGLKPIIFVLNNDGYTIERAIHGPTAPYNDIQSWDYTAL 492 (557)
T ss_pred hhhhhhhcC----CCccEEEEEcCchhhh--hHHHHHHHHHcCCCcEEEEEcCCCcEEEehhcCCCcCcccccccchhhh
Confidence 999999996 5789999999999984 5567999999999 899999999999987665522 12468889
Q ss_pred HhhcCeeEEEE--eCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeec
Q 016909 224 GRAYGVRSIRV--DGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 268 (380)
Q Consensus 224 a~a~G~~~~~V--dG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R 268 (380)
.++||..-... .-...+.+..++..+.+. .+++.||||++.+
T Consensus 493 ~~afg~~~~~~~~~~~~~~~l~~~~~~~~~~---~~~i~lIEv~lp~ 536 (557)
T COG3961 493 PEAFGAKNGEAKFRATTGEELALALDVAFAN---NDRIRLIEVMLPV 536 (557)
T ss_pred hhhcCCCCceEEEeecChHHHHHHHHHHhcC---CCceEEEEEecCc
Confidence 99998643322 223556666777766653 5789999999854
No 129
>PRK11865 pyruvate ferredoxin oxidoreductase subunit beta; Provisional
Probab=99.29 E-value=5.4e-11 Score=114.86 Aligned_cols=130 Identities=18% Similarity=0.143 Sum_probs=101.4
Q ss_pred CCcccccccccCccHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCC-cceeeeccc-
Q 016909 136 HNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPISD- 213 (380)
Q Consensus 136 ~~~~~~~g~lG~~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~-~~i~~~~~~- 213 (380)
.+.....+.+|.+.++|.|++.|.+..+++..||++.|||++..-.+ ++|.-|...+.|+++||.||. |+.++-+..
T Consensus 62 ~~~~~~~~~fg~~~a~a~Gi~~a~~~~~~~~~Vv~~~GDG~~~dIG~-~~L~~a~~r~~ni~~ivlDNe~Y~nTGgQ~S~ 140 (299)
T PRK11865 62 WNVPWIHVAFENAAAVASGIERAVKALGKKVNVVAIGGDGGTADIGF-QSLSGAMERGHNILYLMYDNEAYMNTGIQRSG 140 (299)
T ss_pred cccccchhhhcchHHHHHHHHHHHHHhcCCCeEEEEeCCchHhhccH-HHHHHHHHcCCCeEEEEECCccccCCCCCCCC
Confidence 34556678999999999999999887777789999999999843333 789999999999999998887 443321111
Q ss_pred --------------------ccCCcCHHHHHhhcCeeEE-EEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCC
Q 016909 214 --------------------QFRSDGAVVKGRAYGVRSI-RVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVG 270 (380)
Q Consensus 214 --------------------~~~~~~~~~~a~a~G~~~~-~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R~~ 270 (380)
.....|+..++.++|++.+ +++-.++.++.+++++|.+ .+||.||++.+--.-
T Consensus 141 ~Tp~Ga~t~tsp~Gk~~~G~~~~kkd~~~Ia~a~g~~YVA~~~~~~~~~l~~~i~~A~~----~~Gps~I~v~sPC~~ 214 (299)
T PRK11865 141 STPFGASTTTSPAGKYSRGEDRPKKNMPLIMAAHGIPYVATASIGYPEDFMEKVKKAKE----VEGPAYIQVLQPCPT 214 (299)
T ss_pred CCCCCcccccCCCCcccCCCCCCCCCHHHHHHHcCCCEEEEEeCCCHHHHHHHHHHHHh----CCCCEEEEEECCCCC
Confidence 1124578899999999866 5677799999999999986 489999999875443
No 130
>PF09364 XFP_N: XFP N-terminal domain; InterPro: IPR018970 Phosphoketolases (PK) are key enzymes of the pentose phosphate pathway of heterofermentative and facultative homofermentative lactic acid bacteria and of the D-fructose 6-phosphate shunt of bifidobacteria. PK activity has been sporadically reported in other microorganisms including eukaryotic yeasts. Xylulose-5-phosphate/fructose-6-phosphate phosphoketolase is a thiamine diphosphate (ThdP)-dependent enzyme found in bacteria such as Bifidobacterium sp [, ]. This enzyme has dual-specificity with the following catalytic activities: 4.1.2.9 from EC: xylose 5-P + Pi = acetyl-P + glyeraldehyde-3-P 4.1.2.22 from EC: fructose-6-P + Pi = acetyl-P + erythrose-4-P Phosphoketolases are distantly related to transketolases, e.g. IPR005475 from INTERPRO.; PDB: 3AI7_B 3AHC_A 3AHJ_A 3AHG_A 3AHE_A 3AHI_A 3AHD_A 3AHF_A 3AHH_A.
Probab=99.20 E-value=4.7e-11 Score=116.02 Aligned_cols=170 Identities=24% Similarity=0.296 Sum_probs=111.0
Q ss_pred cccccccchhHHHHHHHHhcCCC--CcEEEccccchHHHH--H----cC----------CC---HHHHHHHhhcCCCCCC
Q 016909 64 ISFYLTTSGEEAINIASAAAIKN--DDFVVPQYREPGVLL--W----RG----------FS---MQEFANQCFGNKADYG 122 (380)
Q Consensus 64 i~~~~~~~GqEa~~~~~~~~l~~--~D~v~~~yR~~~~~l--~----~G----------~~---~~~~l~e~~g~~~~~~ 122 (380)
+|.|-++.|+..+.+++...++. .|.++.+--||+... + -| .+ +..++.+| +
T Consensus 47 lGHWGt~PGlnfiyahlNrlI~~~~~~~~~v~GpGHg~pai~A~~~LeGs~se~yp~~~~d~~Gl~~L~~~F-------S 119 (379)
T PF09364_consen 47 LGHWGTSPGLNFIYAHLNRLIRKYDLDMIYVMGPGHGGPAILANLYLEGSYSEFYPDISQDEEGLRRLFRQF-------S 119 (379)
T ss_dssp -S-TTTHHHHHHHHHHHHHHHHHHTB-B--EESSGGGHHHHHHHHHHHSHHHHHSTTS-SSHHHHHHHHHHB-------T
T ss_pred ccccCCCccHHHHHHHHHHHHHhcCCceEEEecCCCCchhhhhhhhhcCccccccCCCCCCHHHHHHHHHhC-------C
Confidence 46788899999999999988874 577777777775221 1 12 11 22333333 2
Q ss_pred CCCCCccccCCCCCCcccccccccCccHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHc---C-C-C--
Q 016909 123 KGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVT---E-A-P-- 195 (380)
Q Consensus 123 ~G~~~~~H~~~~~~~~~~~~g~lG~~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~---~-L-p-- 195 (380)
--.++++|.+...+|.+.-.|-||..+++|.|+++ ++++.+|+|++|||++.+|. +|+.| + | |
T Consensus 120 ~PgGipSH~~p~tPGsIhEGGELGYaLshA~GA~~----DnPdliv~~vvGDGEaETGp------lA~sWh~~kflnP~~ 189 (379)
T PF09364_consen 120 FPGGIPSHVSPETPGSIHEGGELGYALSHAFGAVF----DNPDLIVACVVGDGEAETGP------LAASWHSNKFLNPAT 189 (379)
T ss_dssp STTSB-SSS-TTSTT-S---SSTS-HHHHHHHHHT----T-TT-EEEEEEETTGGGSHH------HHHHGGGGGSS-TTT
T ss_pred CCCCCccccCcCCCCccCcCcchhhHHHHHhhccc----CCCCeEEEEEecCCcccCCc------ccccccccceeCccc
Confidence 23468899998889999999999999999999986 46999999999999999885 23333 2 1 3
Q ss_pred ---EEEEEEcCCcceeeecccc-cCCcCHHHHHhhcCeeEEEEeCCCHHHHHHHHHHHH
Q 016909 196 ---VIFICRNNGWAISTPISDQ-FRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAR 250 (380)
Q Consensus 196 ---vi~vv~NN~~~i~~~~~~~-~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~A~ 250 (380)
|+-|+.=|+|.|+.++--. .+...+.+.+++||+..+.|+|.|+.++...+..++
T Consensus 190 dGaVLPILhLNG~KI~~pTil~r~~~~eL~~lf~G~Gy~p~~Veg~dp~~~h~~ma~al 248 (379)
T PF09364_consen 190 DGAVLPILHLNGYKISNPTILARMSDEELEALFRGYGYEPIFVEGDDPADMHQAMAAAL 248 (379)
T ss_dssp S-EEEEEEEE-SBSSSSB-HHHHS-HHHHHHHHHHTTEEEEEEE---HHHHHHHHHHHH
T ss_pred CceeeceEEecCccccCCeEeeecCHHHHHHHHHhCCCeEEEEecCCHHHHHHHHHHHH
Confidence 7778889999999887532 344568899999999999999999988877665543
No 131
>PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding
Probab=99.20 E-value=4e-11 Score=139.32 Aligned_cols=116 Identities=17% Similarity=0.130 Sum_probs=91.4
Q ss_pred cccccccC--ccHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHc--CCCEEEEEEcCC-cceeeec---
Q 016909 140 TVSSTIAT--QLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVT--EAPVIFICRNNG-WAISTPI--- 211 (380)
Q Consensus 140 ~~~g~lG~--~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~--~Lpvi~vv~NN~-~~i~~~~--- 211 (380)
.+.|.+|. ++|.|+|+++|. +++|+|++|||+|+.. ..+|.+|+++ ++|+++||.||+ |++....
T Consensus 756 ~~~G~mG~~G~lpaAIGaala~-----~r~Vv~i~GDGsF~m~--~~EL~Ta~r~~~~lpi~iVV~NN~gggi~~~l~~~ 828 (1655)
T PLN02980 756 GNRGASGIDGLLSTAIGFAVGC-----NKRVLCVVGDISFLHD--TNGLSILSQRIARKPMTILVINNHGGAIFSLLPIA 828 (1655)
T ss_pred ecCCccchhhhHHHHHHHhhcC-----CCCEEEEEehHHHHhh--hhHHHHhhcccCCCCEEEEEEeCCCcHhhhcCccC
Confidence 45688988 599999999884 6789999999999753 4669999884 999877777666 5543210
Q ss_pred ---c-----c---ccCCcCHHHHHhhcCeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeec
Q 016909 212 ---S-----D---QFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 268 (380)
Q Consensus 212 ---~-----~---~~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R 268 (380)
. . .....++.+.|++||+++.+|+ +++++.++++++.+ .++|+|||+.|.|
T Consensus 829 ~~~~~~~~~~~~~~~~~~df~~lA~a~G~~~~rV~--~~~eL~~aL~~a~~----~~~p~lIEV~t~~ 890 (1655)
T PLN02980 829 KRTEPRVLNQYFYTSHDISIENLCLAHGVRHLHVG--TKSELEDALFTSQV----EQMDCVVEVESSI 890 (1655)
T ss_pred CCCcchhHHHHhcCCCCCCHHHHHHHcCCceeecC--CHHHHHHHHHHhhc----cCCCEEEEEecCh
Confidence 0 0 0124689999999999999999 99999999988774 5899999999954
No 132
>KOG1185 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=99.17 E-value=2.2e-10 Score=114.38 Aligned_cols=119 Identities=20% Similarity=0.199 Sum_probs=91.4
Q ss_pred ccccccccCccHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcC-C-cceeeecc----
Q 016909 139 FTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN-G-WAISTPIS---- 212 (380)
Q Consensus 139 ~~~~g~lG~~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN-~-~~i~~~~~---- 212 (380)
.++.|.||-|++.|+++|++ .+++.|+|+.||++|.-. .-++.++.+||||||.||.|| + |+.+....
T Consensus 426 aGtfgTMGVG~Gfalaaa~~----~P~~~V~~veGDsaFGfS--aME~ET~vR~~Lpvv~vV~NN~Giyg~d~~~~~~I~ 499 (571)
T KOG1185|consen 426 AGTFGTMGVGLGFALAAALA----APDRKVVCVEGDSAFGFS--AMELETFVRYKLPVVIVVGNNNGIYGLDDDGWKQIS 499 (571)
T ss_pred CccccccccchhHHHHHHhh----CCCCeEEEEecCcccCcc--hhhHHHHHHhcCCeEEEEecCCcccccCcccHHHHh
Confidence 34568888887777777776 499999999999999532 234889999999988888766 3 33332211
Q ss_pred -----------cccCCcCHHHHHhhcCeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeec
Q 016909 213 -----------DQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 268 (380)
Q Consensus 213 -----------~~~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R 268 (380)
.-..+.++.+.+++||..++.|+ .++++..++++++.. +++|++|.+..-+
T Consensus 500 e~~~~~~~p~~~l~~~~rY~~v~ka~G~kG~~v~--t~~el~~~l~~a~q~---~~~psvINVlI~p 561 (571)
T KOG1185|consen 500 EQDPTLDLPPTALLANTRYDKVAKAFGGKGYFVS--TVEELLAALQQACQD---TDKPSVINVLIGP 561 (571)
T ss_pred hcCcccCCCcccccccccHHHHHHHcCCCceeeC--CHHHHHHHHHHHHhc---CCCCeEEEEEecc
Confidence 11234578899999999999999 999999999998864 7799999998744
No 133
>KOG4166 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=98.95 E-value=1.8e-09 Score=106.23 Aligned_cols=116 Identities=21% Similarity=0.233 Sum_probs=93.1
Q ss_pred ccccccCccHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcc-eeeec--------
Q 016909 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWA-ISTPI-------- 211 (380)
Q Consensus 141 ~~g~lG~~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~-i~~~~-------- 211 (380)
.-|.||.|+|.|+|+..| +++.+||-+-||++|.+. ...|.++.+.++||-+++-||.-+ +-+..
T Consensus 522 GLGtMGfGLPAAIGAsVA----~P~~iViDIDGDaSF~Mt--~~ELat~rq~~~PVKiLiLNNeeqGMVtQWq~lFYe~r 595 (675)
T KOG4166|consen 522 GLGTMGFGLPAAIGASVA----NPDAIVIDIDGDASFIMT--VQELATIRQENLPVKILILNNEEQGMVTQWQDLFYEAR 595 (675)
T ss_pred CccccccCcchhhccccc----CcccEEEeccCCceeeee--hHhhhhhhhcCCceEEEEecchhhhhHHHHHHHHHHhh
Confidence 357899999999999887 589999999999999743 355999999999999999898632 22211
Q ss_pred --ccccCCcCHHHHHhhcCeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeec
Q 016909 212 --SDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 268 (380)
Q Consensus 212 --~~~~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R 268 (380)
+...-++++.++|+++|+++.+|. .-+++.+.+++.+. .+||+|+|+.+-.
T Consensus 596 ysHThQ~nPnf~klA~AmGikalRV~--K~edL~~k~kefls----TkGPvLleV~v~~ 648 (675)
T KOG4166|consen 596 YSHTHQENPNFLKLAAAMGIKALRVT--KKEDLREKIKEFLS----TKGPVLLEVIVPH 648 (675)
T ss_pred hccccccCccHHHHHHhcCCchheee--hHHHHHHHHHHHhC----CCCCeEEEEEccC
Confidence 111235789999999999999998 77888888888775 6899999998844
No 134
>COG3960 Glyoxylate carboligase [General function prediction only]
Probab=98.93 E-value=2.4e-09 Score=102.80 Aligned_cols=159 Identities=21% Similarity=0.219 Sum_probs=115.9
Q ss_pred HHHHHhhcCCCCCCCCCCC-------ccccCCCCCC-cccccccccCccHHHHHHHHHhhhcCCCceeEEEeCccccCcc
Q 016909 109 EFANQCFGNKADYGKGRQM-------PIHYGSNKHN-YFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEG 180 (380)
Q Consensus 109 ~~l~e~~g~~~~~~~G~~~-------~~H~~~~~~~-~~~~~g~lG~~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG 180 (380)
+-|.+.||+...+..--++ ..|...+..- .-+..|++|+.+|.|+|...| .+++.++++.||-.|+
T Consensus 377 eemn~~fgrd~~yvstiglsqia~aqflhv~~pr~wincgqagplgwtipaalgv~~a----dp~r~vvalsgdydfq-- 450 (592)
T COG3960 377 EEMNKAFGRDVCYVTTIGLSQIAAAQFLHVFKPRHWINCGQAGPLGWTIPAALGVCAA----DPKRNVVAISGDYDFQ-- 450 (592)
T ss_pred HHHHhhcCCceeEEEeccHHHHhhhhhhhhcCCcceeecCccCCcccccchhhceeec----CCCCceEEeecCchHH--
Confidence 4567778876654221111 1233322111 123468999999999998655 6889999999999998
Q ss_pred hHHHHHHHHHHcCCCEEEEEEcCCcce---------eeeccccc------------CCcCHHHHHhhcCeeEEEEeCCCH
Q 016909 181 DFHAALNFSAVTEAPVIFICRNNGWAI---------STPISDQF------------RSDGAVVKGRAYGVRSIRVDGNDA 239 (380)
Q Consensus 181 ~~~Eal~~A~~~~Lpvi~vv~NN~~~i---------~~~~~~~~------------~~~~~~~~a~a~G~~~~~VdG~D~ 239 (380)
...|.|...+++|||-|+|+.||.|-- +.....+. ..-|..+.++++|++.++|- ++
T Consensus 451 fmieelavgaq~k~pyihv~vnnaylglirqaqr~f~mdy~v~laf~nin~~~~~gygvdhv~v~eglgckairv~--~p 528 (592)
T COG3960 451 FLIEELAVGAQFKIPYIHVLVNNAYLGLIRQAQRAFDMDYCVQLAFENINSSEVNGYGVDHVKVAEGLGCKAIRVF--KP 528 (592)
T ss_pred HHHHHHhhhhcccCceEEEEecchHHHHHHHHHhcCCccceeeehhhccCCccccccCccceeehhccCceeEEec--Ch
Confidence 467999999999999999999998721 11100010 12355678899999999998 99
Q ss_pred HHHHHHHHHHHHHhhccCCcEEEEEEeecCCCCCCC
Q 016909 240 LAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTS 275 (380)
Q Consensus 240 ~av~~a~~~A~~~ar~~~gP~lIe~~t~R~~gHs~~ 275 (380)
+++..++.+|.....+..-|++||+..-|...-+.+
T Consensus 529 ~e~a~af~~a~~lm~eh~vpvvve~ilervtnismg 564 (592)
T COG3960 529 EDIAPAFEQAKALMAQHRVPVVVEVILERVTNISMG 564 (592)
T ss_pred HHhhHHHHHHHHHHHhcCCCeeeehHHHHhhccccc
Confidence 999999999998888889999999999887765544
No 135
>KOG1184 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=98.93 E-value=9.9e-09 Score=103.40 Aligned_cols=120 Identities=18% Similarity=0.183 Sum_probs=91.4
Q ss_pred ccccccccCccHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCC-CEEEEEEcCCcceeeeccccc--
Q 016909 139 FTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEA-PVIFICRNNGWAISTPISDQF-- 215 (380)
Q Consensus 139 ~~~~g~lG~~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~L-pvi~vv~NN~~~i~~~~~~~~-- 215 (380)
....|++|+.+|.++|+++|. ++++||+|+|||++|+ ..+.+.+..+|+| |.||+++|++|.|....+...
T Consensus 411 q~~wgsIG~svga~lG~a~a~----~e~rvilfiGDGs~ql--TvQeiStmir~gl~~~if~~NN~GYTIE~~IH~~~Yn 484 (561)
T KOG1184|consen 411 QMQWGSIGWSVGATLGYAQAA----PEKRVILFIGDGSFQL--TVQEISTMIRWGLKPIIFLINNGGYTIEVEIHDGPYN 484 (561)
T ss_pred EEEEeeccccchhhhhhhhcc----CCceEEEEecCcccee--eHHHHHHHHhcCCCcEEEEEeCCceEEEEeecCCCcc
Confidence 344799999999999999986 5689999999999986 3455889999999 699999999999987665421
Q ss_pred --CCcCHHHHHhhcCeeE---EEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEe
Q 016909 216 --RSDGAVVKGRAYGVRS---IRVDGNDALAIYSAVHAAREMAIGEGRPILIEALT 266 (380)
Q Consensus 216 --~~~~~~~~a~a~G~~~---~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t 266 (380)
.+-++.++.++||..- ....-..-.+..++.+.+... +.++|.||||+.
T Consensus 485 ~I~~Wd~~~l~~afg~~~gk~~~~~v~~~~e~~~~~~~~~~~--~~~~i~liEv~l 538 (561)
T KOG1184|consen 485 DIQNWDYTALLEAFGAGEGKYETHKVRTEEELVEAIKDATFE--KNDKIRLIEVIL 538 (561)
T ss_pred ccccchHHHHHHhhcCccceeEEeeeccchHHHHHHhhhhhc--ccCceEEEEEec
Confidence 1247888999998533 222222455677777777632 467899999987
No 136
>COG3962 Acetolactate synthase [Amino acid transport and metabolism]
Probab=98.70 E-value=1.3e-07 Score=94.36 Aligned_cols=115 Identities=17% Similarity=0.258 Sum_probs=89.0
Q ss_pred cccccCccHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEE-EcCCcceeeec---------
Q 016909 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFIC-RNNGWAISTPI--------- 211 (380)
Q Consensus 142 ~g~lG~~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv-~NN~~~i~~~~--------- 211 (380)
.+.||.-+.-++|+. +..+++-|++++||||+. +.+..|.++..+++.+++++ +|-+|+.....
T Consensus 443 fSCMGYEiaG~lG~K----~a~pdreV~vmVGDGSym--MlnSEL~Tsv~~g~Ki~Vvl~DN~GyGCIn~LQm~~Gg~sf 516 (617)
T COG3962 443 FSCMGYEIAGGLGAK----AAEPDREVYVMVGDGSYM--MLNSELATSVMLGKKIIVVLLDNRGYGCINRLQMATGGASF 516 (617)
T ss_pred ccccccccccccccc----cCCCCCeEEEEEcccchh--hhhHHHHHHHHcCCeEEEEEECCCCcchhhhhhhhcCcchh
Confidence 467788777777764 557889999999999997 57888999999999866655 55566532111
Q ss_pred ---------ccccCCcCHHHHHhhcCeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeec
Q 016909 212 ---------SDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 268 (380)
Q Consensus 212 ---------~~~~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R 268 (380)
+......|+++.|++||+.+++|. +++++..+++.|.+ ..++++|+++|..
T Consensus 517 ~~~~r~~~~e~~~~~vDfA~~A~s~Ga~~~kv~--~i~eL~aAL~~Ak~----~~~ttvi~I~t~P 576 (617)
T COG3962 517 NNLLRDTDHEEEILQVDFAAHAESYGAKAYKVG--TIEELEAALADAKA----SDRTTVIVIDTDP 576 (617)
T ss_pred hhhhhhhcccCCCCcccHHHHHhhcCceeEecC--CHHHHHHHHHHHHh----CCCCEEEEEecCC
Confidence 022445689999999999999998 89888888777665 6899999999855
No 137
>COG3957 Phosphoketolase [Carbohydrate transport and metabolism]
Probab=98.50 E-value=5.2e-07 Score=94.05 Aligned_cols=168 Identities=20% Similarity=0.213 Sum_probs=119.6
Q ss_pred cccccccchhHHHHHHHHhcCCCC--cEEEccccchHHHH------HcCC--------C-----HHHHHHHhhcCCCCCC
Q 016909 64 ISFYLTTSGEEAINIASAAAIKND--DFVVPQYREPGVLL------WRGF--------S-----MQEFANQCFGNKADYG 122 (380)
Q Consensus 64 i~~~~~~~GqEa~~~~~~~~l~~~--D~v~~~yR~~~~~l------~~G~--------~-----~~~~l~e~~g~~~~~~ 122 (380)
++.|-++.|+--+.++....++.. +.++.+-.||+... .-|. + +.+++.+|.
T Consensus 60 lGHwGt~pg~s~~Y~H~nr~i~~~d~~~~yv~GpGHg~~~~~~~~yLeGtys~~yp~~s~d~~Gm~rL~~qFs------- 132 (793)
T COG3957 60 LGHWGTQPGLSFIYAHLNRLISKYDANMAYVMGPGHGGPAIVANTYLEGTYSEMYPDISQDEEGLNRLFKQFS------- 132 (793)
T ss_pred cccccCCCCchhhhhhhhHHHHhhCcceEEEecCCCCcceeeeccccCCccccccccccccHHHHHHHHHhcc-------
Confidence 467888899998888888877754 44444444553211 1221 1 223344443
Q ss_pred CCCCCccccCCCCCCcccccccccCccHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHc--CC------
Q 016909 123 KGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVT--EA------ 194 (380)
Q Consensus 123 ~G~~~~~H~~~~~~~~~~~~g~lG~~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~--~L------ 194 (380)
--.|+++|.....+|.+...|.||+++..|.|+|+ ..++.++.|++|||+..+|. +.++..- -+
T Consensus 133 ~PgGi~SH~~petPGsIhEGGeLGy~l~ha~gAa~----d~Pdli~~~vvGDGeaetgp----latsWhs~kf~np~~dG 204 (793)
T COG3957 133 FPGGIGSHVAPETPGSIHEGGELGYALSHAYGAAF----DNPDLIVACVVGDGEAETGP----LATSWHSNKFLNPARDG 204 (793)
T ss_pred CCCCcccccCCCCCCccCcCcchhHHHHHHHHhhc----CCCCcEEEEEecccccccCc----cccccccccccCccccC
Confidence 23458899998889999999999999999999886 46899999999999776664 3333221 12
Q ss_pred CEEEEEEcCCcceeeecccc-cCCcCHHHHHhhcCeeEEEEeCCCHHHHHHHH
Q 016909 195 PVIFICRNNGWAISTPISDQ-FRSDGAVVKGRAYGVRSIRVDGNDALAIYSAV 246 (380)
Q Consensus 195 pvi~vv~NN~~~i~~~~~~~-~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~ 246 (380)
.++-|..-|+|.|+.++... .+...+.+.+++||++-+.|+|+|+.++...+
T Consensus 205 avLPIL~lNGykI~npT~lar~s~~el~~~f~G~Gy~p~~veg~d~~d~hq~m 257 (793)
T COG3957 205 AVLPILHLNGYKIENPTVLARISDEELKALFEGYGYEPVFVEGADPADMHQLM 257 (793)
T ss_pred ceeeEEEecceeccCceeeeecChHHHHHHHhhCCCceeEecCCChHHhhhhH
Confidence 37888889999999887643 24456889999999999999999988854444
No 138
>COG1013 PorB Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, beta subunit [Energy production and conversion]
Probab=98.46 E-value=7e-06 Score=79.55 Aligned_cols=149 Identities=17% Similarity=0.169 Sum_probs=100.4
Q ss_pred ccccccCccHHHHHHHHHhhhcCCCceeEEEeCccc-cCcchHHHHHHHHHHcCCCEEEEEEcCC-cceeeecccc----
Q 016909 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGG-TSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPISDQ---- 214 (380)
Q Consensus 141 ~~g~lG~~~p~AvG~A~A~k~~~~~~~vv~~~GDG~-~~eG~~~Eal~~A~~~~Lpvi~vv~NN~-~~i~~~~~~~---- 214 (380)
..+.-|-..+.|.|+.+|. ++..||++.|||. +..|. ..+.-|...+.+|.+||.||. |+.++-+...
T Consensus 68 ~hs~~gra~a~atGik~A~----~~l~Viv~gGDG~~~dIG~--~~l~h~~~Rn~dit~iv~DNevYgnTggQ~S~tTp~ 141 (294)
T COG1013 68 VHSLHGRAAAVATGIKLAN----PALSVIVIGGDGDAYDIGG--NHLIHALRRNHDITYIVVDNEVYGNTGGQASPTTPK 141 (294)
T ss_pred eeeccCcchhhHHHHHHhc----cCCeEEEEecchhHhhhhh--HHHHHHHHcCCCeEEEEECCeecccCCCccCCCCCC
Confidence 3567788899999998886 4568999999995 56664 347778889999999888887 4433211111
Q ss_pred ------------c-CCcCHHHHHhhcCeeEE-EEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCCCCCCCCCCCC
Q 016909 215 ------------F-RSDGAVVKGRAYGVRSI-RVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDDSTK 280 (380)
Q Consensus 215 ------------~-~~~~~~~~a~a~G~~~~-~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R~~gHs~~Dd~~~ 280 (380)
. ..-|+..++.++|...+ ++.--++..+.+.+++|+++ +||.||++.+--..+ -+. ..
T Consensus 142 G~~t~t~p~Gk~~~~k~d~~~la~a~G~~yVAr~~~~~~~~l~~~i~kA~~~----~Gps~I~v~sPC~t~---~~~-~~ 213 (294)
T COG1013 142 GAKTKTTPYGKRSEKKKDPGLLAMAAGATYVARASVGDPKDLTEKIKKAAEH----KGPSFIDVLSPCPTG---NGR-NT 213 (294)
T ss_pred CceeeecCCCCCcCCCCCHHHHHHHCCCCeEEEecccCHHHHHHHHHHHHhc----cCCeEEEEecCCCCC---CCc-cc
Confidence 1 22378899999998755 45555799999999999985 699999998733221 111 12
Q ss_pred CCChhHHHHHH-hCCChHHHHHHH
Q 016909 281 YRPVDEIEWWR-TTQDPVTRFRKW 303 (380)
Q Consensus 281 Yr~~~e~~~~~-~~~DPi~~~~~~ 303 (380)
+..-++...|- ...+|+-++...
T Consensus 214 ~~~~~~~~~ave~g~~pl~~~~~~ 237 (294)
T COG1013 214 MKTIEEAKLAVETGYWPLYRYEPG 237 (294)
T ss_pred chHHHHHHHHHhcCCceeeeccCc
Confidence 33344444442 245666665543
No 139
>COG4231 Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits [Energy production and conversion]
Probab=97.99 E-value=2.3e-05 Score=81.55 Aligned_cols=118 Identities=22% Similarity=0.202 Sum_probs=86.7
Q ss_pred CcccccccccCccHHHHHHHHHhhhcCCCceeEEEeCccccC-cchHHHHHHHHHHcCCCEEEEEEcCCc-ceeeecccc
Q 016909 137 NYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTS-EGDFHAALNFSAVTEAPVIFICRNNGW-AISTPISDQ 214 (380)
Q Consensus 137 ~~~~~~g~lG~~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~-eG~~~Eal~~A~~~~Lpvi~vv~NN~~-~i~~~~~~~ 214 (380)
+...++-.+|.++++|-|++++. .+++|+++|||.|. .|. .+|.-|...+.|++++|-+|.+ ++++.+..-
T Consensus 422 ~~~d~t~~mGssig~a~g~~~~~-----~k~~va~iGDsTF~HsGi--~~l~nAV~n~~~~~~vvLdN~~tAMTGgQp~p 494 (640)
T COG4231 422 NTVDTTTMMGSSIGIAGGLSFAS-----TKKIVAVIGDSTFFHSGI--LALINAVYNKANILVVVLDNRTTAMTGGQPHP 494 (640)
T ss_pred chhhhhhhccchhhhcccccccc-----CCceEEEeccccccccCc--HHHHHHHhcCCCeEEEEEeccchhccCCCCCC
Confidence 33444567888888888888764 37899999999994 443 3477788889998887777776 444433211
Q ss_pred ----------cCCcCHHHHHhhcCeeEEE-EeCCCHHHHHHHHHHHHHHhhccCCcEEEEEE
Q 016909 215 ----------FRSDGAVVKGRAYGVRSIR-VDGNDALAIYSAVHAAREMAIGEGRPILIEAL 265 (380)
Q Consensus 215 ----------~~~~~~~~~a~a~G~~~~~-VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~ 265 (380)
.....+.+..++.|...+. ||-.|+.++.+++++|++. .+|.+|.++
T Consensus 495 g~~~~~~g~~~~~i~iee~~r~~Gv~~v~~vdp~~~~~~~~~~keale~----~gpsViiak 552 (640)
T COG4231 495 GTGVAAEGTKSTAIVIEEVVRAMGVEDVETVDPYDVKELSEAIKEALEV----PGPSVIIAK 552 (640)
T ss_pred CcccccCCCccceeEhhHhhhhcCceeeeccCCcchHHHHHHHHHHhcC----CCceEEEEc
Confidence 1234678899999998776 6678999999999998874 789988553
No 140
>COG1165 MenD 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase [Coenzyme metabolism]
Probab=97.70 E-value=0.00014 Score=74.89 Aligned_cols=108 Identities=22% Similarity=0.203 Sum_probs=75.9
Q ss_pred ccHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCC-EEEEEEcCCcceeeecc---------ccc--
Q 016909 148 QLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAP-VIFICRNNGWAISTPIS---------DQF-- 215 (380)
Q Consensus 148 ~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lp-vi~vv~NN~~~i~~~~~---------~~~-- 215 (380)
.++-|+|++.|. .+.+++++||=|+-.-. -+|-+......| +|+|++||+-+|..... +.+
T Consensus 427 ~vSTA~Gi~~a~-----~~ptv~liGDLS~lhD~--NgLl~~k~~~~~ltIvv~NNnGGgIF~~Lp~~~~~~~fe~~F~t 499 (566)
T COG1165 427 TVSTALGIARAT-----QKPTVALIGDLSFLHDL--NGLLLLKKVPQPLTIVVVNNNGGGIFSLLPQAQSEPVFERLFGT 499 (566)
T ss_pred hHHHHhhhhhhc-----CCceEEEEechhhhhcc--chHhhcCCCCCCeEEEEEeCCCceeeeeccCCCCcchHHHhcCC
Confidence 477799998874 45699999999983211 123334445557 66677777777653211 111
Q ss_pred -CCcCHHHHHhhcCeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeec
Q 016909 216 -RSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 268 (380)
Q Consensus 216 -~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R 268 (380)
-.-|++..|+.||+...+++ .+.++..++..+.. ..|-.+||++|.|
T Consensus 500 Ph~ldF~~la~~y~l~y~~~~--s~~~l~~~~~~~~~----~~g~~viEvkt~r 547 (566)
T COG1165 500 PHGLDFAHLAATYGLEYHRPQ--SWDELGEALDQAWR----RSGTTVIEVKTDR 547 (566)
T ss_pred CCCCCHHHHHHHhCccccccC--cHHHHHHHHhhhcc----CCCcEEEEEecCh
Confidence 13489999999999999988 78888888887764 3678999999966
No 141
>cd03377 TPP_PFOR_PNO Thiamine pyrophosphate (TPP family), PFOR_PNO subfamily, TPP-binding module; composed of proteins similar to the single subunit pyruvate ferredoxin oxidoreductase (PFOR) of Desulfovibrio Africanus, present in bacteria and amitochondriate eukaryotes. This subfamily also includes proteins characterized as pyruvate NADP+ oxidoreductase (PNO). These enzymes are dependent on TPP and a divalent metal cation as cofactors. PFOR and PNO catalyze the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. The PFOR from cyanobacterium Anabaena (NifJ) is required for the transfer of electrons from pyruvate to flavodoxin, which reduces nitrogenase. The facultative anaerobic mitochondrion of the photosynthetic protist Euglena gra
Probab=97.33 E-value=0.0017 Score=64.38 Aligned_cols=98 Identities=15% Similarity=0.164 Sum_probs=70.4
Q ss_pred ceeEEEeCcccc-CcchHHHHHHHHHHcCCCEEEEEEcCC-cceeeec-------c---------cccCCcCHHHHHhhc
Q 016909 166 ACAVTYFGDGGT-SEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPI-------S---------DQFRSDGAVVKGRAY 227 (380)
Q Consensus 166 ~~vv~~~GDG~~-~eG~~~Eal~~A~~~~Lpvi~vv~NN~-~~i~~~~-------~---------~~~~~~~~~~~a~a~ 227 (380)
..|+++.|||.. .-|. ..+.-|..-+.+|.+||-||. |+.++-+ . ......|+...+.++
T Consensus 152 ~~v~v~gGDG~~ydIG~--~~l~ha~~r~~ni~~iv~DNe~Y~nTGgQ~S~tTp~Ga~t~tsp~Gk~~~kkd~~~ia~a~ 229 (365)
T cd03377 152 KSVWIIGGDGWAYDIGY--GGLDHVLASGENVNILVLDTEVYSNTGGQASKATPLGAVAKFAAAGKRTGKKDLGMIAMSY 229 (365)
T ss_pred cceEEEecchhhhccch--hhHHHHHHcCCCeEEEEECCcccccCCCcCCCCCCCcCcCccCCCCCCCCCcCHHHHHHHc
Confidence 589999999965 6664 346667777888888887775 5543211 1 112234788999999
Q ss_pred CeeEE-EEe-CCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecC
Q 016909 228 GVRSI-RVD-GNDALAIYSAVHAAREMAIGEGRPILIEALTYRV 269 (380)
Q Consensus 228 G~~~~-~Vd-G~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R~ 269 (380)
|.+.+ ++. |.++.++.+++++|.++ +||.||++.+--.
T Consensus 230 g~~YVA~~s~~~~~~~~~~~i~eA~~~----~Gps~I~v~sPC~ 269 (365)
T cd03377 230 GNVYVAQIALGANDNQTLKAFREAEAY----DGPSLIIAYSPCI 269 (365)
T ss_pred CCCEEEEEecccCHHHHHHHHHHHhcC----CCCEEEEEEccCc
Confidence 98755 454 45999999999999874 8999999987433
No 142
>cd06586 TPP_enzyme_PYR Pyrimidine (PYR) binding domain of thiamine pyrophosphate (TPP)-dependent enzymes. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this group. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. In the case of 2-oxoisovalerate dehydrogenase (2OXO), sulfopyruvate deca
Probab=96.94 E-value=0.016 Score=50.00 Aligned_cols=104 Identities=19% Similarity=0.163 Sum_probs=67.8
Q ss_pred cHHHHHHHHHhhhcCCCceeEEEe-CccccCcchHHHHHHHHHHcCCCEEEEEEcCCcceeeecccccCCcCHHHHHhhc
Q 016909 149 LPHAVGAAYALKMDRKDACAVTYF-GDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAY 227 (380)
Q Consensus 149 ~p~AvG~A~A~k~~~~~~~vv~~~-GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~ 227 (380)
..+|.|.+++. . ..+++.. |.|..+ ..+.+..|...++|+|+++...+..... .......+....++.+
T Consensus 48 ~~~A~G~a~~~----~-~~v~~~~~gpg~~~---~~~~l~~a~~~~~Pvl~i~~~~~~~~~~--~~~~q~~~~~~~~~~~ 117 (154)
T cd06586 48 AGAAAGYARAG----G-PPVVIVTSGTGLLN---AINGLADAAAEHLPVVFLIGARGISAQA--KQTFQSMFDLGMYRSI 117 (154)
T ss_pred HHHHHHHHHhh----C-CEEEEEcCCCcHHH---HHHHHHHHHhcCCCEEEEeCCCChhhhc--cCcccccCHHHHHHHh
Confidence 55677777652 3 3333333 888764 4577778888899999999766643211 1111223445666766
Q ss_pred CeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEE
Q 016909 228 GVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEA 264 (380)
Q Consensus 228 G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~ 264 (380)
..-.+.+. ++.+..+.+.+|+..+....||++|++
T Consensus 118 ~~~~~~~~--~~~~~~~~~~~a~~~a~~~~gPv~l~i 152 (154)
T cd06586 118 PEANISSP--SPAELPAGIDHAIRTAYASQGPVVVRL 152 (154)
T ss_pred hheEEEeC--CHHHHHHHHHHHHHHHhcCCCCEEEEc
Confidence 65555554 777888888888877777789999975
No 143
>cd07039 TPP_PYR_POX Pyrimidine (PYR) binding domain of POX. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites. Lactobacillus plantarum POX is a homotetramer (dimer-of-homodimers), having two active sites per homodimer lying between PYR and PP domains of differ
Probab=96.92 E-value=0.015 Score=51.52 Aligned_cols=106 Identities=16% Similarity=0.043 Sum_probs=74.5
Q ss_pred HHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcceeeecccccCCcCHHHHHhhcCe
Q 016909 150 PHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGV 229 (380)
Q Consensus 150 p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~G~ 229 (380)
-+|-|.|.+. +.-.++++..|=|.++ ..-++..|...++|||+|.-+....... .......|..+.++.+--
T Consensus 52 ~mA~gyar~t---g~~~v~~~t~GpG~~n---~~~~l~~A~~~~~Pvl~I~g~~~~~~~~--~~~~q~~d~~~~~~~~tk 123 (164)
T cd07039 52 FAASAEAKLT---GKLGVCLGSSGPGAIH---LLNGLYDAKRDRAPVLAIAGQVPTDELG--TDYFQEVDLLALFKDVAV 123 (164)
T ss_pred HHHHHHHHHh---CCCEEEEECCCCcHHH---HHHHHHHHHhcCCCEEEEecCCcccccC--CCCCcccCHHHHHHHhhc
Confidence 3556666553 3445666667888776 3456777888899999998765543211 111222366778888877
Q ss_pred eEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEE
Q 016909 230 RSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEAL 265 (380)
Q Consensus 230 ~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~ 265 (380)
...+++ ++.++.+++++|+..++...||+.|++-
T Consensus 124 ~~~~v~--~~~~~~~~i~~A~~~a~~~~GPV~l~iP 157 (164)
T cd07039 124 YNETVT--SPEQLPELLDRAIRTAIAKRGVAVLILP 157 (164)
T ss_pred EEEEeC--CHHHHHHHHHHHHHHHhcCCCCEEEEeC
Confidence 778887 8899999999999888888899999873
No 144
>cd07035 TPP_PYR_POX_like Pyrimidine (PYR) binding domain of POX and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) and related protiens subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. For glyoxylate carboligase, which belongs to this subfamily, but lacks this conserved glutamate, the rate of the initial TPP activation step is reduced but the ensuing steps of the enzymic reaction proceed efficiently. The PYR and PP domains have a common fold, but do not share strong sequence conservatio
Probab=96.85 E-value=0.016 Score=50.35 Aligned_cols=106 Identities=21% Similarity=0.150 Sum_probs=69.5
Q ss_pred cHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcceeeecccccCCcCHHHHHhhcC
Q 016909 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 228 (380)
Q Consensus 149 ~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~G 228 (380)
..+|.|.+++. +.-.++++..|=|.++ ...++..|...++|+|+|.-+....-..... ....+..+.++.+-
T Consensus 47 ~~~A~g~~~~~---~~~~v~~~~~gpG~~n---~~~~l~~A~~~~~Pll~i~~~~~~~~~~~~~--~q~~d~~~~~~~~~ 118 (155)
T cd07035 47 VGMADGYARAT---GKPGVVLVTSGPGLTN---AVTGLANAYLDSIPLLVITGQRPTAGEGRGA--FQEIDQVALFRPIT 118 (155)
T ss_pred HHHHHHHHHHH---CCCEEEEEcCCCcHHH---HHHHHHHHHhhCCCEEEEeCCCccccccCCc--ccccCHHHHHHHHh
Confidence 45666666653 1222333333666554 5577888888999999998765533222111 11234556666665
Q ss_pred eeEEEEeCCCHHHHHHHHHHHHHHhhcc-CCcEEEEE
Q 016909 229 VRSIRVDGNDALAIYSAVHAAREMAIGE-GRPILIEA 264 (380)
Q Consensus 229 ~~~~~VdG~D~~av~~a~~~A~~~ar~~-~gP~lIe~ 264 (380)
-...+++ +++++...+.+|+..+... ++|+.|++
T Consensus 119 ~~~~~i~--~~~~~~~~i~~A~~~a~~~~~gPv~l~i 153 (155)
T cd07035 119 KWAYRVT--SPEEIPEALRRAFRIALSGRPGPVALDL 153 (155)
T ss_pred ceEEEcC--CHHHHHHHHHHHHHHhcCCCCCcEEEEe
Confidence 5567776 8999999999999988877 78999986
No 145
>PRK13030 2-oxoacid ferredoxin oxidoreductase; Provisional
Probab=96.78 E-value=0.0076 Score=68.17 Aligned_cols=114 Identities=16% Similarity=0.073 Sum_probs=75.3
Q ss_pred ccccccCccHHHHHHHHHhhhcCCCceeEEEeCccccC-cchHHHHHHHHHHcCCCEEEEEEcCCc-ceeeecccccCCc
Q 016909 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTS-EGDFHAALNFSAVTEAPVIFICRNNGW-AISTPISDQFRSD 218 (380)
Q Consensus 141 ~~g~lG~~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~-eG~~~Eal~~A~~~~Lpvi~vv~NN~~-~i~~~~~~~~~~~ 218 (380)
++..||+..+.++|.+.+. .++.+|+++|||.|. .|.. +|.-|...+.|++++|-+|.. ++++.+... ...
T Consensus 466 ~~~~MG~~g~~~~G~a~~~----~~~~v~a~iGDgTf~HSG~~--al~~AV~~~~nit~~IL~N~~tAMTGgQp~~-g~i 538 (1159)
T PRK13030 466 GLTQMGGEGVDWIGHAPFT----ETKHVFQNLGDGTYFHSGSL--AIRQAVAAGANITYKILYNDAVAMTGGQPVD-GSI 538 (1159)
T ss_pred eeeccCccchhhceecccc----CCCCEEEEeccchhhhcCHH--HHHHHHhcCCCeEEEEEeCCcccccCCCCCC-CCC
Confidence 4568888888899988763 345799999999984 4433 677778888998887766664 565543321 123
Q ss_pred CHHH---HHhhcCeeEEEEeCCCHHH----------------HHHHHHHHHHHhhccCCcEEEEE
Q 016909 219 GAVV---KGRAYGVRSIRVDGNDALA----------------IYSAVHAAREMAIGEGRPILIEA 264 (380)
Q Consensus 219 ~~~~---~a~a~G~~~~~VdG~D~~a----------------v~~a~~~A~~~ar~~~gP~lIe~ 264 (380)
++.+ ..++.|++-+.|--.|+.. ..+++++++ |+.+||++|..
T Consensus 539 ~v~~i~~~~~a~Gv~~v~vvsddp~~~~~~~~~~~~~v~~r~~l~~vq~~l---~~~~GvsViI~ 600 (1159)
T PRK13030 539 SVPQIARQVEAEGVSRIVVVSDEPEKYRGHHLPAGVTVHHRDELDAVQREL---RETPGVTVLIY 600 (1159)
T ss_pred CHHHHHHHHHhCCCcEEEEecCChhhccccccCCCcccccHHHHHHHHHHH---hcCCCcEEEEE
Confidence 4445 7789999877754334433 333444444 34678888854
No 146
>TIGR03845 sulfopyru_alph sulfopyruvate decarboxylase, alpha subunit. This model represents the alpha subunit, or the N-terminal region, of sulfopyruvate decarboxylase, an enzyme of coenzyme M biosynthesis. Coenzyme M is found almost exclusively in the methanogenic archaea. However, the enzyme also occurs in Roseovarius nubinhibens ISM in a degradative pathway, where the resulting sulfoacetaldehyde is desulfonated to acetyl phosphate, then converted to acetyl-CoA (see PubMed:19581363).
Probab=96.69 E-value=0.029 Score=49.53 Aligned_cols=108 Identities=17% Similarity=0.067 Sum_probs=70.2
Q ss_pred cCccHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHH-HcCCCEEEEEEcCCcceeeecccccCCcCH-HHH
Q 016909 146 ATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSA-VTEAPVIFICRNNGWAISTPISDQFRSDGA-VVK 223 (380)
Q Consensus 146 G~~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~-~~~Lpvi~vv~NN~~~i~~~~~~~~~~~~~-~~~ 223 (380)
+.+..+|.|..++ .++.++|+.+=|- |...-+|..|. .+++|||+|+-.-+.--.. .+.+.....+ ...
T Consensus 44 e~aa~~aAg~~~~-----~~~~~v~~~~sG~---gn~~~~l~~a~~~~~~Pvl~i~g~rg~~~~~-~~~q~~~g~~~~~~ 114 (157)
T TIGR03845 44 EEGVGICAGAYLA-----GKKPAILMQSSGL---GNSINALASLNKTYGIPLPILASWRGVYKEK-IPAQIPMGRATPKL 114 (157)
T ss_pred HHHHHHHHHHHHh-----cCCcEEEEeCCcH---HHHHHHHHHHHHcCCCCEEEEEeccCCCCCC-CccccchhhhhHHH
Confidence 4445666666643 3456677777773 34556677788 8899999999544431110 0011111111 223
Q ss_pred HhhcCeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEE
Q 016909 224 GRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEAL 265 (380)
Q Consensus 224 a~a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~ 265 (380)
....+++...++ +++++ .++.+|+..+.++++|+.|-+.
T Consensus 115 l~~~~i~~~~i~--~~e~~-~~i~~A~~~a~~~~gPv~il~~ 153 (157)
T TIGR03845 115 LDTLGIPYTIPR--EPEEA-KLIEKAISDAYENSRPVAALLD 153 (157)
T ss_pred HHHcCCCeEEeC--CHHHH-HHHHHHHHHHHhCCCCEEEEEe
Confidence 456777888887 79999 9999999999999999998764
No 147
>TIGR02176 pyruv_ox_red pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric. This model represents a single chain form of pyruvate:ferredoxin (or flavodoxin) oxidoreductase. This enzyme may transfer electrons to nitrogenase in nitrogen-fixing species. Portions of this protein are homologous to gamma subunit of the four subunit pyruvate:ferredoxin (flavodoxin) oxidoreductase.
Probab=96.66 E-value=0.016 Score=66.12 Aligned_cols=98 Identities=15% Similarity=0.205 Sum_probs=70.3
Q ss_pred ceeEEEeCcccc-CcchHHHHHHHHHHcCCCEEEEEEcCC-cceee-------ecc---------cccCCcCHHHHHhhc
Q 016909 166 ACAVTYFGDGGT-SEGDFHAALNFSAVTEAPVIFICRNNG-WAIST-------PIS---------DQFRSDGAVVKGRAY 227 (380)
Q Consensus 166 ~~vv~~~GDG~~-~eG~~~Eal~~A~~~~Lpvi~vv~NN~-~~i~~-------~~~---------~~~~~~~~~~~a~a~ 227 (380)
..|+++.|||.. ..|. ..+.-+..-+.+|.+||-||. |+.++ |.. ......|+...+.++
T Consensus 952 ~sv~~~~GDG~~~diG~--~~l~~~~~r~~~v~~i~~dne~Y~nTggQ~S~~tp~g~~t~~~~~g~~~~kkd~~~~a~~~ 1029 (1165)
T TIGR02176 952 KSVWIIGGDGWAYDIGY--GGLDHVLASGKDVNVLVMDTEVYSNTGGQSSKATPTGAIAKFAAAGKRTSKKDLGMMAMTY 1029 (1165)
T ss_pred ceeEEEecchhhhccCc--cchHHHHHcCCCeEEEEECCcccccCCCcCCCCCCCcCccccCCCCCCCCCcCHHHHHHHC
Confidence 469999999965 5553 346667778888888887775 54432 111 112345788899999
Q ss_pred CeeEE-EEe-CCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecC
Q 016909 228 GVRSI-RVD-GNDALAIYSAVHAAREMAIGEGRPILIEALTYRV 269 (380)
Q Consensus 228 G~~~~-~Vd-G~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R~ 269 (380)
|...+ ++. |.++.++.+++++|..+ +||.+|++.+--.
T Consensus 1030 g~~yvA~~~~~~~~~~~~~~~~~A~~~----~G~s~i~~~~pC~ 1069 (1165)
T TIGR02176 1030 GYVYVAQVSMGANMQQTLKAFREAEAY----DGPSIVIAYSPCI 1069 (1165)
T ss_pred CCCEEEEEecccCHHHHHHHHHHHHcC----CCCEEEEEECCCc
Confidence 98655 565 66899999999999874 8999999987543
No 148
>cd07034 TPP_PYR_PFOR_IOR-alpha_like Pyrimidine (PYR) binding domain of pyruvate ferredoxin oxidoreductase (PFOR), indolepyruvate ferredoxin oxidoreductase alpha subunit (IOR-alpha), and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain, of pyruvate ferredoxin oxidoreductase (PFOR), indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit (IOR-alpha), and related proteins, subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. Th
Probab=96.55 E-value=0.021 Score=49.98 Aligned_cols=105 Identities=16% Similarity=0.105 Sum_probs=66.6
Q ss_pred cHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcceeeecccccCCcCHHHHHhhcC
Q 016909 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 228 (380)
Q Consensus 149 ~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~G 228 (380)
..+|-|.+++ +. +.+++..|-|..+ ....|-.|...+.|+|+|+-+................+....++. .
T Consensus 54 ~~~A~g~~r~----~~-~v~~~~~gpG~~n---~~~~l~~a~~~~~P~v~i~g~~~~~~~~~~~~~~~~~~~~~~~~~-~ 124 (160)
T cd07034 54 AEAAIGASAA----GA-RAMTATSGPGLNL---MAEALYLAAGAELPLVIVVAQRPGPSTGLPKPDQSDLMAARYGGH-P 124 (160)
T ss_pred HHHHHHHHhh----CC-cEEEeeCcchHHH---HHHHHHHHHhCCCCEEEEEeeCCCCCCCCCCcCcHHHHHHHhCCC-C
Confidence 4455566554 22 2667777888775 456677787888999999876543221110000000112223333 3
Q ss_pred eeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEE
Q 016909 229 VRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEA 264 (380)
Q Consensus 229 ~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~ 264 (380)
+...++. +++++.+.+++|+..++.+++|++|..
T Consensus 125 ~~~~~~~--~~~~~~~~~~~A~~~a~~~~~Pv~l~~ 158 (160)
T cd07034 125 WPVLAPS--SVQEAFDLALEAFELAEKYRLPVIVLS 158 (160)
T ss_pred EEEEeCC--CHHHHHHHHHHHHHHHHHhCCCEEEEc
Confidence 6666666 899999999999999999889999864
No 149
>PF02776 TPP_enzyme_N: Thiamine pyrophosphate enzyme, N-terminal TPP binding domain; InterPro: IPR012001 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the N-terminal TPP binding domain of TPP enzymes.; GO: 0030976 thiamine pyrophosphate binding; PDB: 3HWX_1 3FLM_B 3HWW_A 2JLC_A 2JLA_A 2VBG_A 2VBF_B 2Q29_A 2Q27_B 2Q28_B ....
Probab=96.52 E-value=0.021 Score=50.79 Aligned_cols=108 Identities=21% Similarity=0.097 Sum_probs=73.1
Q ss_pred cHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcceeeecccccCCcCHHHHHhhcC
Q 016909 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 228 (380)
Q Consensus 149 ~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~G 228 (380)
..+|.|.+++. +.-.++++..|=|.++ ..-++..|...++|+|+|+-.-..........+ ...+....++.+.
T Consensus 52 ~~~A~g~ar~~---g~~~v~~~~~GpG~~n---~~~~l~~A~~~~~Pvl~i~g~~~~~~~~~~~~q-~~~d~~~~~~~~~ 124 (172)
T PF02776_consen 52 AFMADGYARAT---GRPGVVIVTSGPGATN---ALTGLANAYADRIPVLVITGQRPSAGEGRGAFQ-QEIDQQSLFRPVT 124 (172)
T ss_dssp HHHHHHHHHHH---SSEEEEEEETTHHHHT---THHHHHHHHHTT-EEEEEEEESSGGGTTTTSTT-SSTHHHHHHGGGS
T ss_pred HHHHHHHHHhh---ccceEEEeecccchHH---HHHHHhhcccceeeEEEEecccchhhhcccccc-cchhhcchhcccc
Confidence 45677777653 3334455555666665 234566678889999999987765443311111 1236677888888
Q ss_pred eeEEEEeCCCHHHHHHHHHHHHHHh-hccCCcEEEEEE
Q 016909 229 VRSIRVDGNDALAIYSAVHAAREMA-IGEGRPILIEAL 265 (380)
Q Consensus 229 ~~~~~VdG~D~~av~~a~~~A~~~a-r~~~gP~lIe~~ 265 (380)
-...+++ +++++..++++|+..+ ....+|+.|++-
T Consensus 125 k~~~~v~--~~~~~~~~~~~A~~~a~~~~~gPv~l~ip 160 (172)
T PF02776_consen 125 KWSYRVT--SPDDLPEALDRAFRAATSGRPGPVYLEIP 160 (172)
T ss_dssp SEEEEEC--SGGGHHHHHHHHHHHHHHCSTSEEEEEEE
T ss_pred chhcccC--CHHHHHHHHHHHHHHhccCCCccEEEEcC
Confidence 7888887 8888888888888887 677899999985
No 150
>PRK09193 indolepyruvate ferredoxin oxidoreductase; Validated
Probab=96.49 E-value=0.014 Score=65.99 Aligned_cols=119 Identities=13% Similarity=0.049 Sum_probs=79.4
Q ss_pred cccccccCccHHHHHHHHHhhhcCCCceeEEEeCccccC-cchHHHHHHHHHHcCCCEEEEEEcCC-cceeeeccc--cc
Q 016909 140 TVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTS-EGDFHAALNFSAVTEAPVIFICRNNG-WAISTPISD--QF 215 (380)
Q Consensus 140 ~~~g~lG~~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~-eG~~~Eal~~A~~~~Lpvi~vv~NN~-~~i~~~~~~--~~ 215 (380)
.++..||+..+.++|.+.+ ..++.+|+++|||.|. .|. -+|.-|...+.|++++|-+|. -++++.+.. ..
T Consensus 478 ~~~~~MG~eg~~~~G~a~f----~~~~hv~a~iGDgTffHSG~--~al~~AV~~~~nit~~IL~N~~vAMTGgQ~~~g~~ 551 (1165)
T PRK09193 478 STFTQMGGEGVPWIGQAPF----TDEKHVFQNLGDGTYFHSGL--LAIRAAVAAGVNITYKILYNDAVAMTGGQPVDGGL 551 (1165)
T ss_pred CeeeccCCcchhhceeccc----cCCCcEEEEeccccchhcCH--HHHHHHHhcCCCeEEEEEeCCcccccCCCCCCCCc
Confidence 3467889888899998775 2346799999999984 443 347677788889887665555 566654432 23
Q ss_pred CCcCHHHHHhhcCeeEEEEeCCCHHHHHHH--------------HHHHHHHhhccCCcEEEEE
Q 016909 216 RSDGAVVKGRAYGVRSIRVDGNDALAIYSA--------------VHAAREMAIGEGRPILIEA 264 (380)
Q Consensus 216 ~~~~~~~~a~a~G~~~~~VdG~D~~av~~a--------------~~~A~~~ar~~~gP~lIe~ 264 (380)
+..++.+..++.|++-+.|--.|+...... ++...+..|+.+|+++|..
T Consensus 552 ~~~~i~~~~~a~GV~~v~vv~ddp~~~~~~~~~~~~v~~~~R~~l~~vq~~lr~~~GvsViI~ 614 (1165)
T PRK09193 552 SVPQITRQLAAEGVKRIVVVTDEPEKYDGVARLAPGVTVHHRDELDAVQRELREIPGVTVLIY 614 (1165)
T ss_pred chhhHHHHHHhCCCCEEEEeCCChhhhhhccccCcCcccccHHHHHHHHHHHhcCCCcEEEEE
Confidence 556788999999998776544455544322 3333333335788888854
No 151
>cd07038 TPP_PYR_PDC_IPDC_like Pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC), indolepyruvate decarboxylase (IPDC) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites, for many
Probab=96.47 E-value=0.042 Score=48.56 Aligned_cols=107 Identities=19% Similarity=0.108 Sum_probs=71.1
Q ss_pred cHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcceeeecc---ccc---CCcCHHH
Q 016909 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPIS---DQF---RSDGAVV 222 (380)
Q Consensus 149 ~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~i~~~~~---~~~---~~~~~~~ 222 (380)
.-+|-|.+.+. .-.++++..|=|.++ ..-++..|...+.|||+|+-+.......... ... ..++..+
T Consensus 48 ~~mA~gyar~t----~~gv~~~t~GpG~~n---~~~gl~~A~~~~~Pvl~i~g~~~~~~~~~~~~~~~~~~~~~~~d~~~ 120 (162)
T cd07038 48 GYAADGYARVK----GLGALVTTYGVGELS---ALNGIAGAYAEHVPVVHIVGAPSTKAQASGLLLHHTLGDGDFDVFLK 120 (162)
T ss_pred HHHHHHHHHhh----CCEEEEEcCCccHHH---HHHHHHHHHHcCCCEEEEecCCCccccccccceeecccccchHHHHH
Confidence 44566666653 133444445777665 3456777888899999999765432111100 001 0124567
Q ss_pred HHhhcCeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEE
Q 016909 223 KGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEA 264 (380)
Q Consensus 223 ~a~a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~ 264 (380)
.++.+.-...+|. +++++.+++++|+..+..++||+.|++
T Consensus 121 ~~~~~tk~~~~v~--~~~~i~~~v~~A~~~a~s~~gPV~l~i 160 (162)
T cd07038 121 MFEEITCAAARLT--DPENAAEEIDRVLRTALRESRPVYIEI 160 (162)
T ss_pred HHHhheeEEEEeC--CHHHHHHHHHHHHHHHHHCCCCEEEEc
Confidence 7777777778887 888999999999999888889999986
No 152
>PRK13029 2-oxoacid ferredoxin oxidoreductase; Provisional
Probab=95.83 E-value=0.047 Score=61.82 Aligned_cols=118 Identities=14% Similarity=0.027 Sum_probs=74.3
Q ss_pred ccccccCccHHHHHHHHHhhhcCCCceeEEEeCccccC-cchHHHHHHHHHHcCCCEEEEEEcCC-cceeeeccc--ccC
Q 016909 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTS-EGDFHAALNFSAVTEAPVIFICRNNG-WAISTPISD--QFR 216 (380)
Q Consensus 141 ~~g~lG~~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~-eG~~~Eal~~A~~~~Lpvi~vv~NN~-~~i~~~~~~--~~~ 216 (380)
++..||+....++|.+.+. .++.+|+++|||.|. .|. -+|.-|...+.|++++|-+|. -++++.+.. ..+
T Consensus 493 ~~~~MGgeg~~~~G~a~f~----~~~hv~aniGDgTffHSG~--~alr~AV~~~~nit~kIL~N~avAMTGgQp~~G~~~ 566 (1186)
T PRK13029 493 GFSQMGGEGVAWIGQMPFS----RRRHVFQNLGDGTYFHSGL--LAIRQAIAAGVNITYKILYNDAVAMTGGQPVDGVLT 566 (1186)
T ss_pred eeeccCcchhhheeecccC----CCCCEEEEeccccchhcCH--HHHHHHHhcCCCEEEEEEeCcchhccCCCCCCCcCC
Confidence 4567888888888887662 346799999999984 443 347777788889888665555 566654332 223
Q ss_pred CcCHHHHHhhcCeeEEEEeCCCHHHHH--------------HHHHHHHHHhhccCCcEEEEE
Q 016909 217 SDGAVVKGRAYGVRSIRVDGNDALAIY--------------SAVHAAREMAIGEGRPILIEA 264 (380)
Q Consensus 217 ~~~~~~~a~a~G~~~~~VdG~D~~av~--------------~a~~~A~~~ar~~~gP~lIe~ 264 (380)
.+.++...++.|+.-+.|--.|+..+. +.+....+..|+.+|+++|..
T Consensus 567 v~~i~~~~~a~GV~~v~vv~d~p~~~~~~~~~~~gv~~~~R~~l~~vq~~lr~~~GvsViI~ 628 (1186)
T PRK13029 567 VPQIARQVHAEGVRRIVVVTDEPGKYRGVARLPAGVTVHHRDELDAVQRELREVPGVSVLIY 628 (1186)
T ss_pred HHHHHHHHHhCCccEEEEeCCCccccccccccCCccccccHHHHHHHHHHHhcCCCcEEEEE
Confidence 334445779999987765322343332 233333333335678888754
No 153
>cd07037 TPP_PYR_MenD Pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate synthase (MenD) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate (SEPHCHC) synthase (MenD) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dim
Probab=95.60 E-value=0.084 Score=46.81 Aligned_cols=107 Identities=13% Similarity=0.063 Sum_probs=64.7
Q ss_pred cHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcceeeecccccCCcCHHHHHhhcC
Q 016909 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 228 (380)
Q Consensus 149 ~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~G 228 (380)
.-+|-|.|.+. +.-.++++..|=|.++ ..-++..|...+.|||+|+-+-....... ..+...|....++.+-
T Consensus 48 ~~mAdgyar~s---g~~gv~~~t~GpG~~n---~~~gl~~A~~~~~Pvl~i~g~~~~~~~~~--~~~q~~d~~~l~~~vt 119 (162)
T cd07037 48 AFFALGLAKAS---GRPVAVVCTSGTAVAN---LLPAVVEAYYSGVPLLVLTADRPPELRGT--GANQTIDQVGLFGDYV 119 (162)
T ss_pred HHHHHHHHHhh---CCCEEEEECCchHHHH---HhHHHHHHHhcCCCEEEEECCCCHHhcCC--CCCcccchhhhcccee
Confidence 34566666553 3444556666777775 33456778888999999997544332111 1111224445566555
Q ss_pred eeEEEEeCCCHHH------HHHHHHHHHHHhhccC-CcEEEEEE
Q 016909 229 VRSIRVDGNDALA------IYSAVHAAREMAIGEG-RPILIEAL 265 (380)
Q Consensus 229 ~~~~~VdG~D~~a------v~~a~~~A~~~ar~~~-gP~lIe~~ 265 (380)
-...+|. ++++ +.+.+++|+..++.+. ||++|++-
T Consensus 120 k~~~~v~--~~~~~~~~~~~~~~i~~A~~~A~~~~~GPv~l~iP 161 (162)
T cd07037 120 RWSVDLP--PPEDDDDLWYLLRLANRAVLEALSAPPGPVHLNLP 161 (162)
T ss_pred eEEEecC--CcccchhHHHHHHHHHHHHHHHhCCCCCCEEEecc
Confidence 4555664 4444 6777777777776654 89999863
No 154
>PRK08611 pyruvate oxidase; Provisional
Probab=94.82 E-value=0.26 Score=52.39 Aligned_cols=108 Identities=14% Similarity=0.043 Sum_probs=74.0
Q ss_pred cHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcceeeecccccCCcCHHHHHhhcC
Q 016909 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 228 (380)
Q Consensus 149 ~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~G 228 (380)
.-+|.|.|.+ .+.-.++++..|=|.++ ..-++..|...++|||+|+-......... ..+...|..+.++.+-
T Consensus 56 ~~mAdgyar~---tg~~gv~~~t~GPG~~N---~l~gla~A~~~~~Pvl~ItG~~~~~~~~~--~~~q~~d~~~l~~~it 127 (576)
T PRK08611 56 ALAAAAYAKL---TGKIGVCLSIGGPGAIH---LLNGLYDAKMDHVPVLALAGQVTSDLLGT--DFFQEVNLEKMFEDVA 127 (576)
T ss_pred HHHHHHHHHH---hCCceEEEECCCCcHHH---HHHHHHHHhhcCCCEEEEecCCcccccCC--CCccccCHHHHhhccc
Confidence 3456666654 34445666667888886 33456778888999999987654432211 1111235667777776
Q ss_pred eeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEe
Q 016909 229 VRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALT 266 (380)
Q Consensus 229 ~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t 266 (380)
--..+|+ +++++..++.+|+..+..+.||+.|++-.
T Consensus 128 k~~~~v~--~~~~~~~~l~~A~~~A~~~~GPV~l~iP~ 163 (576)
T PRK08611 128 VYNHQIM--SAENLPEIVNQAIRTAYEKKGVAVLTIPD 163 (576)
T ss_pred ceeEEeC--CHHHHHHHHHHHHHHHhhCCCCEEEEeCh
Confidence 5666776 89999999999998888888999998754
No 155
>TIGR03254 oxalate_oxc oxalyl-CoA decarboxylase. In a number of bacteria, including Oxalobacter formigenes from the human gut, a two-gene operon of oxc (oxalyl-CoA decarboxylase) and frc (formyl-CoA transferase) encodes a system for degrading and therefore detoxifying oxalate. Members of this family are the thiamine pyrophosphate (TPP)-containing enzyme oxalyl-CoA decarboxylase.
Probab=94.79 E-value=0.25 Score=52.11 Aligned_cols=109 Identities=16% Similarity=0.130 Sum_probs=73.3
Q ss_pred HHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcceeeecccccCCcCHHHHHhhcCe
Q 016909 150 PHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGV 229 (380)
Q Consensus 150 p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~G~ 229 (380)
-+|-|.|.+. +.-.++++..|=|.++ ..-++-.|..-++|||+|+-.............+...|....++.+--
T Consensus 54 ~mAdgyar~t---g~~gv~~~t~GPG~~N---~~~gia~A~~~~~Pvl~I~G~~~~~~~~~~~~~~q~~d~~~~~~~vtk 127 (554)
T TIGR03254 54 YAAAAAGFLT---QKPGVCLTVSAPGFLN---GLTALANATTNCFPMIMISGSSERHIVDLQQGDYEEMDQLAAAKPFAK 127 (554)
T ss_pred HHHHHHHHHh---CCCEEEEEccCccHHh---HHHHHHHHHhcCCCEEEEEccCCccccccCCCCcchhhHHHHhhhhhe
Confidence 4566666553 3445677777998886 334577788889999999865543211001111222355677887777
Q ss_pred eEEEEeCCCHHHHHHHHHHHHHHhhcc-CCcEEEEEEe
Q 016909 230 RSIRVDGNDALAIYSAVHAAREMAIGE-GRPILIEALT 266 (380)
Q Consensus 230 ~~~~VdG~D~~av~~a~~~A~~~ar~~-~gP~lIe~~t 266 (380)
...+|+ +++++.+.+.+|+..+..+ .||+.|++-.
T Consensus 128 ~~~~v~--~~~~~~~~i~rA~~~A~~~~pGPV~l~iP~ 163 (554)
T TIGR03254 128 AAYRVL--RAEDIGIGIARAIRTAVSGRPGGVYLDLPA 163 (554)
T ss_pred eEEEcC--CHHHHHHHHHHHHHHHhcCCCCcEEEEcCH
Confidence 788887 8999999999998887775 4899998754
No 156
>cd07033 TPP_PYR_DXS_TK_like Pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and related proteins. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and the beta subunits of the E1 component of the human pyruvate dehydrogenase complex (E1- PDHc), subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included
Probab=94.74 E-value=0.27 Score=43.06 Aligned_cols=100 Identities=22% Similarity=0.201 Sum_probs=61.2
Q ss_pred ccHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHH-HHHHcCCCEEEEEEcCCcce--eeecccccCCcCHHHHH
Q 016909 148 QLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALN-FSAVTEAPVIFICRNNGWAI--STPISDQFRSDGAVVKG 224 (380)
Q Consensus 148 ~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~-~A~~~~Lpvi~vv~NN~~~i--~~~~~~~~~~~~~~~~a 224 (380)
.+++|.|+|+. | .++++++. ..+.. ..++.+. .++.+++|+++++...+++. .++++.. ..++ ...
T Consensus 51 ~vg~A~GlA~~----G-~~pi~~~~--~~f~~-ra~dqi~~~~a~~~~pv~~~~~~~g~~~~~~G~tH~~--~~~~-a~~ 119 (156)
T cd07033 51 MVGIAAGLALH----G-LKPFVSTF--SFFLQ-RAYDQIRHDVALQNLPVKFVGTHAGISVGEDGPTHQG--IEDI-ALL 119 (156)
T ss_pred HHHHHHHHHHC----C-CeEEEEEC--HHHHH-HHHHHHHHHHhccCCCeEEEEECCcEecCCCCcccch--HHHH-HHh
Confidence 35567777753 3 34444444 44432 3445555 88999999999998776654 3333322 1222 223
Q ss_pred hhc-CeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEE
Q 016909 225 RAY-GVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEA 264 (380)
Q Consensus 225 ~a~-G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~ 264 (380)
+.+ |+.++. -.|+.++...+++|++. ++|++|-.
T Consensus 120 ~~iPg~~v~~--Ps~~~~~~~ll~~a~~~----~~P~~irl 154 (156)
T cd07033 120 RAIPNMTVLR--PADANETAAALEAALEY----DGPVYIRL 154 (156)
T ss_pred cCCCCCEEEe--cCCHHHHHHHHHHHHhC----CCCEEEEe
Confidence 333 555554 44999999999999863 57988743
No 157
>PRK08659 2-oxoglutarate ferredoxin oxidoreductase subunit alpha; Validated
Probab=94.67 E-value=0.22 Score=50.22 Aligned_cols=117 Identities=19% Similarity=0.207 Sum_probs=76.4
Q ss_pred ccHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcceeeecccccCCcCH-HHHHhh
Q 016909 148 QLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGA-VVKGRA 226 (380)
Q Consensus 148 ~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~i~~~~~~~~~~~~~-~~~a~a 226 (380)
.+.+|+|+++| +.++++.+.=+++. ..+|.+.+|+-.++|+|+++-+.... ++.........|+ ..+..+
T Consensus 60 A~~~a~GAs~a------G~Ra~TaTSg~Gl~--lm~E~~~~a~~~e~P~Viv~~~R~gp-~tg~p~~~~q~D~~~~~~~~ 130 (376)
T PRK08659 60 SMAAVIGASWA------GAKAMTATSGPGFS--LMQENIGYAAMTETPCVIVNVQRGGP-STGQPTKPAQGDMMQARWGT 130 (376)
T ss_pred HHHHHHhHHhh------CCCeEeecCCCcHH--HHHHHHHHHHHcCCCEEEEEeecCCC-CCCCCCCcCcHHHHHHhccc
Confidence 37788898887 34566555444443 46899999999999988888775421 1111111111222 233333
Q ss_pred cC-eeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCCCCCCC
Q 016909 227 YG-VRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTS 275 (380)
Q Consensus 227 ~G-~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R~~gHs~~ 275 (380)
+| .+.+.+...|+.+.+.....|++.+.+.+-|++|-..++ -+|+..
T Consensus 131 hgd~~~ivl~p~~~QEa~d~~~~Af~lAE~~~~PViv~~D~~--lsh~~~ 178 (376)
T PRK08659 131 HGDHPIIALSPSSVQECFDLTIRAFNLAEKYRTPVIVLADEV--VGHMRE 178 (376)
T ss_pred CCCcCcEEEeCCCHHHHHHHHHHHHHHHHHHCCCEEEEechH--hhCCcc
Confidence 43 333445566999999999999998888889999988883 667653
No 158
>COG0028 IlvB Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=94.66 E-value=0.26 Score=52.10 Aligned_cols=108 Identities=20% Similarity=0.160 Sum_probs=76.7
Q ss_pred cHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcceeeecccccCCcCHHHHHhhcC
Q 016909 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 228 (380)
Q Consensus 149 ~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~G 228 (380)
.-+|-|.|.+ .|+-.++++..|=|+++ ..-.|-.|..-+.|+|.|.-.-. .+....+.+...|....++.+-
T Consensus 52 a~mAdgyar~---TGkpgV~~~tsGPGatN---~~tgla~A~~d~~Pll~itGqv~--~~~~g~~afQe~D~~~l~~p~t 123 (550)
T COG0028 52 AFAADGYARA---TGKPGVCLVTSGPGATN---LLTGLADAYMDSVPLLAITGQVP--TSLIGTDAFQEVDQVGLFRPIT 123 (550)
T ss_pred HHHHHHHHHH---cCCCEEEEECCCCcHHH---HHHHHHHHHhcCCCEEEEeCCcc--ccccCcchhhhcchhhHhhhhh
Confidence 3445565544 46778999999999997 34457778888899999875211 1111112222236777777777
Q ss_pred eeEEEEeCCCHHHHHHHHHHHHHHhhccC-CcEEEEEEe
Q 016909 229 VRSIRVDGNDALAIYSAVHAAREMAIGEG-RPILIEALT 266 (380)
Q Consensus 229 ~~~~~VdG~D~~av~~a~~~A~~~ar~~~-gP~lIe~~t 266 (380)
-..++|. +++++.+.+++|+..+..++ ||++|++-.
T Consensus 124 k~~~~v~--~~~~ip~~i~~Af~~A~sgrpGpv~i~iP~ 160 (550)
T COG0028 124 KYNFEVR--SPEDIPEVVARAFRIALSGRPGPVVVDLPK 160 (550)
T ss_pred eeEEEeC--CHHHHHHHHHHHHHHHhcCCCceEEEEcCh
Confidence 7778887 99999999999999998877 999998754
No 159
>PRK07119 2-ketoisovalerate ferredoxin reductase; Validated
Probab=94.59 E-value=0.38 Score=48.01 Aligned_cols=111 Identities=13% Similarity=0.072 Sum_probs=77.5
Q ss_pred ccHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcceeeecccccCCcCHHHHHh--
Q 016909 148 QLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGR-- 225 (380)
Q Consensus 148 ~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~i~~~~~~~~~~~~~~~~a~-- 225 (380)
.+.+|+|+++| +.++++.+-++.+. ..+|.+.+|+-..+|+++++-+-. +-+ ...+ ..+-.++.-
T Consensus 60 A~~~a~GAs~a------G~Ra~taTSg~Gl~--lm~E~l~~a~~~e~P~v~v~v~R~-~p~---~g~t-~~eq~D~~~~~ 126 (352)
T PRK07119 60 AINMVYGAAAT------GKRVMTSSSSPGIS--LKQEGISYLAGAELPCVIVNIMRG-GPG---LGNI-QPSQGDYFQAV 126 (352)
T ss_pred HHHHHHHHHhh------CCCEEeecCcchHH--HHHHHHHHHHHccCCEEEEEeccC-CCC---CCCC-cchhHHHHHHH
Confidence 37788899887 45688888777775 578999999999999888887754 111 1111 112222221
Q ss_pred ------hcCeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCCCCCCC
Q 016909 226 ------AYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTS 275 (380)
Q Consensus 226 ------a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R~~gHs~~ 275 (380)
-++|.++ +-.|+.+.++....|++.+.+..-|+++-..++ -+|+..
T Consensus 127 ~~~ghgd~~~~vl--~p~~~qEa~d~~~~Af~lAE~~~~PViv~~D~~--lsh~~~ 178 (352)
T PRK07119 127 KGGGHGDYRLIVL--APSSVQEMVDLTMLAFDLADKYRNPVMVLGDGV--LGQMME 178 (352)
T ss_pred hcCCCCCcceEEE--eCCCHHHHHHHHHHHHHHHHHhCCCEEEEcchh--hhCcee
Confidence 1235555 455999999999999988888889999988884 366643
No 160
>TIGR03297 Ppyr-DeCO2ase phosphonopyruvate decarboxylase. This family consists of examples of phosphonopyruvate an decarboxylase enzyme that produces phosphonoacetaldehyde (Pald), the second step in the biosynthesis phosphonate-containing compounds. Since the preceding enzymate step, PEP phosphomutase (AepX, TIGR02320) favors the substrate PEP energetically, the decarboxylase is required to drive the reaction in the direction of phosphonate production. Pald is a precursor of natural products including antibiotics like bialaphos and phosphonothricin in Streptomyces species, phosphonate-modified molecules such as the polysaccharide B of Bacteroides fragilis, the phosphonolipids of Tetrahymena pyroformis, the glycosylinositolphospholipids of Trypanosoma cruzi. This gene generally occurs in prokaryotic organisms adjacent to the gene for AepX. Most often an aminotansferase (aepZ) is also present which leads to the production of the most common phosphonate compound, 2-aminoethylphosphonate (A
Probab=94.59 E-value=0.15 Score=51.04 Aligned_cols=113 Identities=17% Similarity=0.159 Sum_probs=72.7
Q ss_pred cccCccHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHH-HH--HHHcCCCEEEEEEcCCccee--eecccccCCc
Q 016909 144 TIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAAL-NF--SAVTEAPVIFICRNNGWAIS--TPISDQFRSD 218 (380)
Q Consensus 144 ~lG~~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal-~~--A~~~~Lpvi~vv~NN~~~i~--~~~~~~~~~~ 218 (380)
.=|.++++|.|+.+| .+++.++++=-.++. ...-.| .+ ...|++|++++|-.-+.--. .|.+. .-+.
T Consensus 34 ~E~~av~iaaG~~la-----tG~~~~v~mQnSGlG--n~vN~l~SL~~~~~y~iP~l~~i~~RG~~g~~depqh~-~~G~ 105 (361)
T TIGR03297 34 NEGAAVGLAAGAYLA-----TGKRAAVYMQNSGLG--NAVNPLTSLADTEVYDIPLLLIVGWRGEPGVHDEPQHV-KQGR 105 (361)
T ss_pred CchHHHHHHHHHHHh-----cCCccEEEEecCchh--hhhhHHHhhccccccCcCeeEEEecCCCCCCCCCchhh-HHhH
Confidence 357778889998887 233445554322231 111222 23 45689999999987775321 12111 1123
Q ss_pred CHHHHHhhcCeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEE
Q 016909 219 GAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEAL 265 (380)
Q Consensus 219 ~~~~~a~a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~ 265 (380)
-..+..+++|++...++ .+.++...++..|++++.+.++|+.|-+.
T Consensus 106 ~t~~lL~~~~i~~~~~~-~~~~~~~~~~~~a~~~~~~~~~p~a~l~~ 151 (361)
T TIGR03297 106 ITLSLLDALEIPWEVLS-TDNDEALAQIERALAHALATSRPYALVVR 151 (361)
T ss_pred HHHHHHHHcCCCEEECC-CChHHHHHHHHHHHHHHHHHCCCEEEEEc
Confidence 34578899999999994 35667888888888888888999888664
No 161
>PRK07525 sulfoacetaldehyde acetyltransferase; Validated
Probab=94.57 E-value=0.33 Score=51.69 Aligned_cols=107 Identities=16% Similarity=0.108 Sum_probs=70.4
Q ss_pred HHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcceeeecccccCCcCHHHHHhhcCe
Q 016909 150 PHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGV 229 (380)
Q Consensus 150 p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~G~ 229 (380)
-+|.|.|.+. +.-.++++..|=|.++ ..-++-.|...++|||+|+-.-..... ....+...+....++.+--
T Consensus 57 ~~Adgyar~t---g~~gv~~~t~GPG~~n---~~~gi~~A~~~~~Pvl~I~g~~~~~~~--~~~~~q~~d~~~l~~~~tk 128 (588)
T PRK07525 57 HMADGYTRVT---GRMGMVIGQNGPGITN---FVTAVATAYWAHTPVVLVTPQAGTKTI--GQGGFQEAEQMPMFEDMTK 128 (588)
T ss_pred HHHHHHHHHh---CCCEEEEEcCCccHHH---HHHHHHHHhhcCCCEEEEeCCCCcccC--CCCCCcccchhhhhhhhee
Confidence 4566666553 3445667777888886 335566778889999999832211100 0011111245566776655
Q ss_pred eEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEe
Q 016909 230 RSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALT 266 (380)
Q Consensus 230 ~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t 266 (380)
...++. +++.+...+.+|+..++.+.||+.|++-.
T Consensus 129 ~~~~i~--~~~~~~~~i~rA~~~A~~~~GPV~i~iP~ 163 (588)
T PRK07525 129 YQEEVR--DPSRMAEVLNRVFDKAKRESGPAQINIPR 163 (588)
T ss_pred EEEECC--CHHHHHHHHHHHHHHHhcCCCCEEEEcCh
Confidence 566666 89999999999999888889999998864
No 162
>PRK07524 hypothetical protein; Provisional
Probab=94.25 E-value=0.42 Score=50.17 Aligned_cols=110 Identities=17% Similarity=0.037 Sum_probs=74.4
Q ss_pred cHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcceeeecc-cccCCcCHHHHHhhc
Q 016909 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPIS-DQFRSDGAVVKGRAY 227 (380)
Q Consensus 149 ~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~i~~~~~-~~~~~~~~~~~a~a~ 227 (380)
.-+|-|.|.. .+.-.++++..|=|.++ ..-++.-|...++|||+|+-........... ......|....++.+
T Consensus 52 ~~mAdgyar~---tg~~gv~~~t~GpG~~n---~~~gi~~A~~~~~Pvl~i~G~~~~~~~~~~~~~~~~~~d~~~l~~~~ 125 (535)
T PRK07524 52 GFMADGYARV---SGKPGVCFIITGPGMTN---IATAMGQAYADSIPMLVISSVNRRASLGKGRGKLHELPDQRAMVAGV 125 (535)
T ss_pred HHHHHHHHHH---hCCCeEEEECCCccHHH---HHHHHHHHHhcCCCEEEEeCCCChhhcCCCCccccccccHHHHhhhh
Confidence 4456666554 23445677777888886 3456777888899999998644322111100 001123567788888
Q ss_pred CeeEEEEeCCCHHHHHHHHHHHHHHhhcc-CCcEEEEEEe
Q 016909 228 GVRSIRVDGNDALAIYSAVHAAREMAIGE-GRPILIEALT 266 (380)
Q Consensus 228 G~~~~~VdG~D~~av~~a~~~A~~~ar~~-~gP~lIe~~t 266 (380)
--...+|. +++++.+.+.+|+..++.+ .||+.|++-.
T Consensus 126 tk~~~~v~--~~~~~~~~l~~A~~~A~~~~~GPV~l~iP~ 163 (535)
T PRK07524 126 AAFSHTLM--SAEDLPEVLARAFAVFDSARPRPVHIEIPL 163 (535)
T ss_pred ceeEEEeC--CHHHHHHHHHHHHHHHhcCCCCcEEEEeCH
Confidence 77777887 8999999999999888876 5999998764
No 163
>PRK09259 putative oxalyl-CoA decarboxylase; Validated
Probab=94.14 E-value=0.47 Score=50.31 Aligned_cols=109 Identities=17% Similarity=0.147 Sum_probs=71.4
Q ss_pred HHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcceeeecccccCCcCHHHHHhhcCe
Q 016909 150 PHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGV 229 (380)
Q Consensus 150 p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~G~ 229 (380)
-+|-|.+.+. +.-.++++..|=|.++ ..-++..|...++|||+|+-.-...........+...|....++.+--
T Consensus 61 ~mAdgyar~t---g~~gv~~~t~GPG~~N---~l~gl~~A~~~~~Pvl~I~G~~~~~~~~~~~~~~q~~d~~~~~~~~tk 134 (569)
T PRK09259 61 NAAAAAGFLT---QKPGVCLTVSAPGFLN---GLTALANATTNCFPMIMISGSSEREIVDLQQGDYEELDQLNAAKPFCK 134 (569)
T ss_pred HHHHHHHHHh---CCCEEEEEcCCccHHH---HHHHHHHHHhcCCCEEEEEccCCcccccccCCCccccchhhhhhhhee
Confidence 3455555542 3445666667888886 334577788889999999865432210000111122355567777766
Q ss_pred eEEEEeCCCHHHHHHHHHHHHHHhhcc-CCcEEEEEEe
Q 016909 230 RSIRVDGNDALAIYSAVHAAREMAIGE-GRPILIEALT 266 (380)
Q Consensus 230 ~~~~VdG~D~~av~~a~~~A~~~ar~~-~gP~lIe~~t 266 (380)
...+|+ +++++...+.+|+..+..+ .||+.|++-.
T Consensus 135 ~s~~v~--~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~ 170 (569)
T PRK09259 135 AAFRVN--RAEDIGIGVARAIRTAVSGRPGGVYLDLPA 170 (569)
T ss_pred eeEEcC--CHHHHHHHHHHHHHHhhhCCCCcEEEEeCH
Confidence 677777 8999999999999888775 5899998863
No 164
>PRK06457 pyruvate dehydrogenase; Provisional
Probab=94.12 E-value=0.46 Score=50.13 Aligned_cols=107 Identities=16% Similarity=0.025 Sum_probs=70.8
Q ss_pred HHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcceeeecccccCCcCHHHHHhhcCe
Q 016909 150 PHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGV 229 (380)
Q Consensus 150 p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~G~ 229 (380)
-+|.|.|.+ .+.-.++++..|=|.++ ..-++-.|..-+.|||+|+-.-...... ...+...|..+.++.+--
T Consensus 53 ~mAdgyar~---tgkpgv~~~t~GPG~~N---~l~~l~~A~~~~~Pvl~i~G~~~~~~~~--~~~~q~~d~~~l~~~vtk 124 (549)
T PRK06457 53 LAASVEAKI---TGKPSACMGTSGPGSIH---LLNGLYDAKMDHAPVIALTGQVESDMIG--HDYFQEVNLTKLFDDVAV 124 (549)
T ss_pred HHHHHHHHH---hCCCeEEEeCCCCchhh---hHHHHHHHHhcCCCEEEEecCCCccccC--CCcccccchhhhhcccee
Confidence 356666654 34455666777888886 3456777888899999998653322111 111112245566666555
Q ss_pred eEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEe
Q 016909 230 RSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALT 266 (380)
Q Consensus 230 ~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t 266 (380)
...+|. ++.++..++++|+..+....||+.|++-.
T Consensus 125 ~~~~v~--~~~~~~~~i~~A~~~a~~~~GPV~l~iP~ 159 (549)
T PRK06457 125 FNQILI--NPENAEYIIRRAIREAISKRGVAHINLPV 159 (549)
T ss_pred EEEEeC--CHHHHHHHHHHHHHHHhcCCCCEEEEeCH
Confidence 556666 88899999999998888888999998864
No 165
>PRK07064 hypothetical protein; Provisional
Probab=94.01 E-value=0.53 Score=49.49 Aligned_cols=109 Identities=17% Similarity=0.106 Sum_probs=71.4
Q ss_pred HHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcceeeecccc-cCCcCHHHHHhhcC
Q 016909 150 PHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQ-FRSDGAVVKGRAYG 228 (380)
Q Consensus 150 p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~i~~~~~~~-~~~~~~~~~a~a~G 228 (380)
-+|.|.|.+. +.-.++++..|=|.++ ..-++-.|..-+.|||+|+-+-.-......... ....|..+.++.+-
T Consensus 55 ~~A~gyar~t---g~~~v~~~t~GpG~~N---~~~~i~~A~~~~~Pvl~i~g~~~~~~~~~~~~~~~~~~d~~~~~~~~t 128 (544)
T PRK07064 55 NMADAHARVS---GGLGVALTSTGTGAGN---AAGALVEALTAGTPLLHITGQIETPYLDQDLGYIHEAPDQLTMLRAVS 128 (544)
T ss_pred HHHHHHHHhc---CCCeEEEeCCCCcHHH---HHHHHHHHHhcCCCEEEEeCCCCcccccCCCcccccccCHHHHhhhhc
Confidence 4566666553 3445667777888886 345677788889999999864221110000000 11235667777766
Q ss_pred eeEEEEeCCCHHHHHHHHHHHHHHhhcc-CCcEEEEEEe
Q 016909 229 VRSIRVDGNDALAIYSAVHAAREMAIGE-GRPILIEALT 266 (380)
Q Consensus 229 ~~~~~VdG~D~~av~~a~~~A~~~ar~~-~gP~lIe~~t 266 (380)
-...+|+ +++++..++.+|+..+..+ .||+.|++-.
T Consensus 129 k~~~~v~--~~~~~~~~i~~A~~~a~~~~~GPV~l~iP~ 165 (544)
T PRK07064 129 KAAFRVR--SAETALATIREAVRVALTAPTGPVSVEIPI 165 (544)
T ss_pred ceEEEeC--CHHHHHHHHHHHHHHhccCCCCcEEEEeCH
Confidence 5677776 8888999999998887776 7999998864
No 166
>TIGR03457 sulphoacet_xsc sulfoacetaldehyde acetyltransferase. Members of this protein family are sulfoacetaldehyde acetyltransferase, an enzyme of taurine utilization. Taurine, or 2-aminoethanesulfonate, can be used by bacteria as a source of carbon, nitrogen, and sulfur.
Probab=94.00 E-value=0.42 Score=50.74 Aligned_cols=107 Identities=15% Similarity=0.084 Sum_probs=70.4
Q ss_pred HHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcceeeecccccCCcCHHHHHhhcCe
Q 016909 150 PHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGV 229 (380)
Q Consensus 150 p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~G~ 229 (380)
-+|.|.|.+ .+.-.++++..|=|.++ ..-++..|...+.|||+|.-.-.... .....+...|....++.+--
T Consensus 53 ~~Adgyar~---tg~~gv~~~t~GPG~~N---~~~gla~A~~~~~Pvl~I~g~~~~~~--~~~~~~Q~~d~~~l~~~vtk 124 (579)
T TIGR03457 53 HMADGFARV---TGRMSMVIGQNGPGVTN---CVTAIAAAYWAHTPVVIVTPEAGTKT--IGLGGFQEADQLPMFQEFTK 124 (579)
T ss_pred HHHHHHHHH---hCCCEEEEECCCchHHH---HHHHHHHHhhcCCCEEEEeCCCcccc--CCCCCCcccchhhhhhccee
Confidence 355566554 34445666777888886 33457778888999999973221110 00111111255566776666
Q ss_pred eEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEe
Q 016909 230 RSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALT 266 (380)
Q Consensus 230 ~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t 266 (380)
...+|. +++++...+++|+..+..++||+.|++-.
T Consensus 125 ~~~~v~--~~~~~~~~i~~A~~~A~~~~GPV~l~iP~ 159 (579)
T TIGR03457 125 YQGHVR--HPSRMAEVLNRCFERAWREMGPAQLNIPR 159 (579)
T ss_pred EEEecC--CHHHHHHHHHHHHHHHhcCCCCEEEEeCc
Confidence 666676 89999999999998888888999998854
No 167
>PRK06112 acetolactate synthase catalytic subunit; Validated
Probab=93.92 E-value=0.5 Score=50.17 Aligned_cols=107 Identities=18% Similarity=0.102 Sum_probs=71.6
Q ss_pred HHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcceeeecccccCCcCHHHHHhhcCe
Q 016909 150 PHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGV 229 (380)
Q Consensus 150 p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~G~ 229 (380)
-+|.|.|.+. +.-.++++..|=|.++ ..-++.-|...++|||+|+-.-...... .......|....++.+--
T Consensus 63 ~~Adgyar~t---g~~gv~~~t~GpG~~N---~~~gl~~A~~~~~Pvl~I~G~~~~~~~~--~~~~Q~~d~~~l~~~vtk 134 (578)
T PRK06112 63 AMADGYARVS---GKVAVVTAQNGPAATL---LVAPLAEALKASVPIVALVQDVNRDQTD--RNAFQELDHIALFQSCTK 134 (578)
T ss_pred HHHHHHHHHh---CCCEEEEeCCCCcHHH---HHHHHHHHhhcCCCEEEEecCCccccCC--CCCccccChhhhhccccc
Confidence 3566666543 4455666677888875 3455667888899999998543221111 111112355667777776
Q ss_pred eEEEEeCCCHHHHHHHHHHHHHHhhcc-CCcEEEEEEe
Q 016909 230 RSIRVDGNDALAIYSAVHAAREMAIGE-GRPILIEALT 266 (380)
Q Consensus 230 ~~~~VdG~D~~av~~a~~~A~~~ar~~-~gP~lIe~~t 266 (380)
...+|+ +++++...+.+|+..++.+ .||+.|++-.
T Consensus 135 ~~~~v~--~~~~~~~~i~~A~~~A~~~~~GPv~l~iP~ 170 (578)
T PRK06112 135 WVRRVT--VAERIDDYVDQAFTAATSGRPGPVVLLLPA 170 (578)
T ss_pred eEEEeC--CHHHHHHHHHHHHHHHhhCCCCcEEEEcCH
Confidence 677777 8899999999999888876 4899998864
No 168
>PRK07979 acetolactate synthase 3 catalytic subunit; Validated
Probab=93.86 E-value=0.46 Score=50.42 Aligned_cols=108 Identities=17% Similarity=0.143 Sum_probs=73.8
Q ss_pred HHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcceeeecccccCCcCHHHHHhhcCe
Q 016909 150 PHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGV 229 (380)
Q Consensus 150 p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~G~ 229 (380)
-+|-|.|.+ .+.-.++++..|=|.++ ..-++..|...++|||+|+-.-...... ...+-..|....++.+--
T Consensus 56 ~mAdgYar~---tg~~gv~~~t~GPG~~n---~l~gi~~A~~~~~Pvl~i~G~~~~~~~~--~~~~q~~d~~~l~~~~tk 127 (574)
T PRK07979 56 HMADGLARA---TGEVGVVLVTSGPGATN---AITGIATAYMDSIPLVVLSGQVATSLIG--YDAFQECDMVGISRPVVK 127 (574)
T ss_pred HHHHHHHHH---hCCceEEEECCCccHhh---hHHHHHHHhhcCCCEEEEECCCChhccC--CCCCceecHHHHhhcccc
Confidence 356666654 34456777778988886 3345667788899999998654332211 111222356667777766
Q ss_pred eEEEEeCCCHHHHHHHHHHHHHHhhccC-CcEEEEEEee
Q 016909 230 RSIRVDGNDALAIYSAVHAAREMAIGEG-RPILIEALTY 267 (380)
Q Consensus 230 ~~~~VdG~D~~av~~a~~~A~~~ar~~~-gP~lIe~~t~ 267 (380)
...+|. +++++...+++|+..++.+. ||+.|++-..
T Consensus 128 ~~~~v~--~~~~~~~~l~~A~~~A~~~~~GPv~l~iP~D 164 (574)
T PRK07979 128 HSFLVK--QTEDIPQVLKKAFWLAASGRPGPVVVDLPKD 164 (574)
T ss_pred eEEEeC--CHHHHHHHHHHHHHHHccCCCCcEEEEcChh
Confidence 677776 89999999999998888875 9999988653
No 169
>PRK06456 acetolactate synthase catalytic subunit; Reviewed
Probab=93.79 E-value=0.5 Score=50.07 Aligned_cols=108 Identities=19% Similarity=0.086 Sum_probs=71.4
Q ss_pred cHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcceeeecccccCCcCHHHHHhhcC
Q 016909 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 228 (380)
Q Consensus 149 ~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~G 228 (380)
.-+|.|.|... +.-.++++..|=|.++ ..-++..|...++|||+|.-.-....... ..+...|....++.+-
T Consensus 56 ~~~Adgyar~t---g~~gv~~~t~GpG~~N---~l~gi~~A~~~~~Pvl~i~G~~~~~~~~~--~~~q~~d~~~i~~~~t 127 (572)
T PRK06456 56 AHAADGYARAS---GVPGVCTATSGPGTTN---LVTGLITAYWDSSPVIAITGQVPRSVMGK--MAFQEADAMGVFENVT 127 (572)
T ss_pred HHHHHHHHHhh---CCCEEEEeCCCCCHHH---HHHHHHHHHhhCCCEEEEecCCCccccCC--CCccccchhhhhhccc
Confidence 34566666542 3344555567888886 33556778888999999985443221111 1111124566777776
Q ss_pred eeEEEEeCCCHHHHHHHHHHHHHHhhccC-CcEEEEEEe
Q 016909 229 VRSIRVDGNDALAIYSAVHAAREMAIGEG-RPILIEALT 266 (380)
Q Consensus 229 ~~~~~VdG~D~~av~~a~~~A~~~ar~~~-gP~lIe~~t 266 (380)
-...+|+ +++++...+.+|+..++.+. ||+.|++-.
T Consensus 128 k~~~~v~--~~~~~~~~l~~A~~~A~~~~~GPV~l~iP~ 164 (572)
T PRK06456 128 KYVIGIK--RIDEIPQWIKNAFYIATTGRPGPVVIDIPR 164 (572)
T ss_pred eeEEEeC--CHHHHHHHHHHHHHHHhcCCCCcEEEecCh
Confidence 6677776 89999999999998888765 999998854
No 170
>PRK08266 hypothetical protein; Provisional
Probab=93.79 E-value=0.56 Score=49.31 Aligned_cols=110 Identities=16% Similarity=0.099 Sum_probs=71.9
Q ss_pred HHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcceeeeccccc-CCcCHHHHHhhcC
Q 016909 150 PHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQF-RSDGAVVKGRAYG 228 (380)
Q Consensus 150 p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~i~~~~~~~~-~~~~~~~~a~a~G 228 (380)
-+|.|.|.+. +.-.++++..|=|.++ ..-++--|..-++|||+|+-.-..........++ ...|....++.+-
T Consensus 57 ~~A~gyar~t---g~~~v~~~t~GpG~~N---~~~gi~~A~~~~~Pvl~i~g~~~~~~~~~~~~~~~~~~d~~~~~~~~t 130 (542)
T PRK08266 57 YMAFGYARST---GRPGVCSVVPGPGVLN---AGAALLTAYGCNSPVLCLTGQIPSALIGKGRGHLHEMPDQLATLRSFT 130 (542)
T ss_pred HHHHHHHHHh---CCCeEEEECCCCcHHH---HHHHHHHHHhhCCCEEEEecCCChhhccCCCCcceecccHhhHHhhhc
Confidence 3666766553 3334566667888886 3455777888899999998532211100000011 1135667777776
Q ss_pred eeEEEEeCCCHHHHHHHHHHHHHHhhcc-CCcEEEEEEee
Q 016909 229 VRSIRVDGNDALAIYSAVHAAREMAIGE-GRPILIEALTY 267 (380)
Q Consensus 229 ~~~~~VdG~D~~av~~a~~~A~~~ar~~-~gP~lIe~~t~ 267 (380)
-...+|+ +++++...+++|+..++.+ .||+.|++-..
T Consensus 131 k~~~~v~--~~~~~~~~l~~A~~~a~~~~~GPV~l~iP~d 168 (542)
T PRK08266 131 KWAERIE--HPSEAPALVAEAFQQMLSGRPRPVALEMPWD 168 (542)
T ss_pred ceEEEeC--CHHHHHHHHHHHHHHHhhCCCCcEEEEeCHh
Confidence 6677787 8889999999999887774 58999988753
No 171
>PRK08366 vorA 2-ketoisovalerate ferredoxin oxidoreductase subunit alpha; Reviewed
Probab=93.78 E-value=0.55 Score=47.57 Aligned_cols=113 Identities=21% Similarity=0.265 Sum_probs=75.9
Q ss_pred ccHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcceeeecccccCCcCHHHHHhhc
Q 016909 148 QLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAY 227 (380)
Q Consensus 148 ~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~ 227 (380)
.+.+|+|+++| +.++++.+-=++++ ..+|.|.+|+-.++|+|+++.|-.-. ++........|+. .++--
T Consensus 61 A~~~aiGAs~a------GaRa~TaTSg~Gl~--lm~E~l~~aa~~~lPiVi~~~~R~~p--~~~~~~~~q~D~~-~~~d~ 129 (390)
T PRK08366 61 AMAACIGASAA------GARAFTATSAQGLA--LMHEMLHWAAGARLPIVMVDVNRAMA--PPWSVWDDQTDSL-AQRDT 129 (390)
T ss_pred HHHHHHHHHhh------CCCeEeeeCcccHH--HHhhHHHHHHhcCCCEEEEEeccCCC--CCCCCcchhhHHH-HHhhc
Confidence 37788899887 34566665555554 47899999999999988887654432 2222111112222 12333
Q ss_pred CeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCCCCCC
Q 016909 228 GVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTT 274 (380)
Q Consensus 228 G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R~~gHs~ 274 (380)
||-++. ..|+.+.+.....|++.+.+..-|+++-..+|+.. |..
T Consensus 130 g~i~~~--~~~~QEa~d~t~~Af~lAE~~~~PViv~~Dg~~~s-h~~ 173 (390)
T PRK08366 130 GWMQFY--AENNQEVYDGVLMAFKVAETVNLPAMVVESAFILS-HTY 173 (390)
T ss_pred CEEEEe--CCCHHHHHHHHHHHHHHHHHHCCCEEEEecCcccc-ccc
Confidence 664443 46999999999999988888899999999888865 443
No 172
>PRK06276 acetolactate synthase catalytic subunit; Reviewed
Probab=93.68 E-value=0.59 Score=49.73 Aligned_cols=108 Identities=20% Similarity=0.139 Sum_probs=71.9
Q ss_pred cHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcceeeecccccCCcCHHHHHhhcC
Q 016909 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 228 (380)
Q Consensus 149 ~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~G 228 (380)
..+|.|.|.+. +.-.++++..|=|.++ ..-++--|...++|||+|+-.-..... .......-|....++.+-
T Consensus 51 ~~~Adgyar~t---g~~gv~~~t~GPG~~n---~l~~i~~A~~~~~Pvl~I~G~~~~~~~--~~~~~q~~d~~~l~~~~t 122 (586)
T PRK06276 51 AHAADGYARAS---GKVGVCVATSGPGATN---LVTGIATAYADSSPVIALTGQVPTKLI--GNDAFQEIDALGIFMPIT 122 (586)
T ss_pred HHHHHHHHHHh---CCCEEEEECCCccHHH---HHHHHHHHHhcCCCEEEEeCCCCcccc--CCCCCccccHhhHHhhhc
Confidence 44566666543 3445666677888886 345566788889999999843322111 111111225566777776
Q ss_pred eeEEEEeCCCHHHHHHHHHHHHHHhhcc-CCcEEEEEEe
Q 016909 229 VRSIRVDGNDALAIYSAVHAAREMAIGE-GRPILIEALT 266 (380)
Q Consensus 229 ~~~~~VdG~D~~av~~a~~~A~~~ar~~-~gP~lIe~~t 266 (380)
-...+|+ +++++...+.+|+..+..+ .||+.|++-.
T Consensus 123 k~s~~v~--~~~~i~~~i~~A~~~A~~~~~GPV~l~iP~ 159 (586)
T PRK06276 123 KHNFQIK--KPEEIPEIFRAAFEIAKTGRPGPVHIDLPK 159 (586)
T ss_pred ceEEecC--CHHHHHHHHHHHHHHhcCCCCCcEEEEcCh
Confidence 6677776 8899999999999888776 4899998864
No 173
>PRK07418 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=93.66 E-value=0.63 Score=49.85 Aligned_cols=108 Identities=19% Similarity=0.153 Sum_probs=71.6
Q ss_pred cHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcceeeecccccCCcCHHHHHhhcC
Q 016909 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 228 (380)
Q Consensus 149 ~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~G 228 (380)
.-+|.|.|.. .+.-.++++..|=|.++ ..-+|-.|..-+.|||+|.-.-..... ....+...|....++.+-
T Consensus 73 a~aA~gyar~---tgk~gv~~~t~GPG~~n---~l~gl~~A~~d~~Pvl~i~G~~~~~~~--~~~~~Qe~d~~~~~~~vt 144 (616)
T PRK07418 73 AHAADGYARA---TGKVGVCFGTSGPGATN---LVTGIATAQMDSVPMVVITGQVPRPAI--GTDAFQETDIFGITLPIV 144 (616)
T ss_pred HHHHHHHHHH---hCCCeEEEECCCccHHH---HHHHHHHHHhcCCCEEEEecCCCcccc--CCCCcccccHHHHhhhcc
Confidence 3455566544 34455666677888886 335577788889999999864322110 111111235566677665
Q ss_pred eeEEEEeCCCHHHHHHHHHHHHHHhhccC-CcEEEEEEe
Q 016909 229 VRSIRVDGNDALAIYSAVHAAREMAIGEG-RPILIEALT 266 (380)
Q Consensus 229 ~~~~~VdG~D~~av~~a~~~A~~~ar~~~-gP~lIe~~t 266 (380)
-...+|+ +++++..++.+|+..+..++ ||+.|++-.
T Consensus 145 k~~~~v~--~~~~i~~~l~~A~~~A~~~~~GPv~l~iP~ 181 (616)
T PRK07418 145 KHSYVVR--DPSDMARIVAEAFHIASSGRPGPVLIDIPK 181 (616)
T ss_pred eeEEEeC--CHHHHHHHHHHHHHHHhcCCCCcEEEecch
Confidence 5566777 89999999999998888776 999998754
No 174
>PRK08322 acetolactate synthase; Reviewed
Probab=93.64 E-value=0.61 Score=49.10 Aligned_cols=108 Identities=15% Similarity=0.117 Sum_probs=71.4
Q ss_pred cHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcceeeecccccCCcCHHHHHhhcC
Q 016909 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 228 (380)
Q Consensus 149 ~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~G 228 (380)
.-+|.|.|.+. +.-.++++..|=|.++ ..-++--|..-++|||+|+-.-...... ...+...|....++.+-
T Consensus 51 ~~~A~gyar~t---g~~gv~~~t~GpG~~N---~~~~i~~A~~~~~Pll~i~g~~~~~~~~--~~~~q~~d~~~~~~~~t 122 (547)
T PRK08322 51 AFMAATYGRLT---GKAGVCLSTLGPGATN---LVTGVAYAQLGGMPMVAITGQKPIKRSK--QGSFQIVDVVAMMAPLT 122 (547)
T ss_pred HHHHHHHHHhh---CCCEEEEECCCccHhH---HHHHHHHHhhcCCCEEEEeccccccccC--CCccccccHHHHhhhhe
Confidence 34566666542 3445666666888886 3355667778899999998543322111 11122235666777665
Q ss_pred eeEEEEeCCCHHHHHHHHHHHHHHhhcc-CCcEEEEEEe
Q 016909 229 VRSIRVDGNDALAIYSAVHAAREMAIGE-GRPILIEALT 266 (380)
Q Consensus 229 ~~~~~VdG~D~~av~~a~~~A~~~ar~~-~gP~lIe~~t 266 (380)
-...+|. +++++.+.+.+|+..+..+ .||+.|++-.
T Consensus 123 k~~~~v~--~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~ 159 (547)
T PRK08322 123 KWTRQIV--SPDNIPEVVREAFRLAEEERPGAVHLELPE 159 (547)
T ss_pred eEEEEeC--CHHHHHHHHHHHHHHHccCCCCcEEEEcCh
Confidence 5566776 8999999999999888876 4899998864
No 175
>PRK11269 glyoxylate carboligase; Provisional
Probab=93.64 E-value=0.63 Score=49.59 Aligned_cols=108 Identities=15% Similarity=0.149 Sum_probs=71.7
Q ss_pred HHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcceeeecccccCCcCHHHHHhhcCe
Q 016909 150 PHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGV 229 (380)
Q Consensus 150 p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~G~ 229 (380)
-+|.|.|.+.. ++-.++++..|=|.++ ..-++..|..-++|||+|.-.-....... ..+...|....++.+--
T Consensus 56 ~mAdGYar~t~--g~~gv~~~t~GPG~~N---~l~gl~~A~~~~~Pvl~I~G~~~~~~~~~--~~~q~~d~~~l~~~itk 128 (591)
T PRK11269 56 HMAEGYTRATA--GNIGVCIGTSGPAGTD---MITGLYSASADSIPILCITGQAPRARLHK--EDFQAVDIESIAKPVTK 128 (591)
T ss_pred HHHHHHHHHcC--CCcEEEEECCCCcHHH---HHHHHHHHhhcCCCEEEEecCCCccccCC--CcccccChhhHhhccee
Confidence 45666665421 3345566677888886 23456677788999999986544322111 11112355667776655
Q ss_pred eEEEEeCCCHHHHHHHHHHHHHHhhccC-CcEEEEEEe
Q 016909 230 RSIRVDGNDALAIYSAVHAAREMAIGEG-RPILIEALT 266 (380)
Q Consensus 230 ~~~~VdG~D~~av~~a~~~A~~~ar~~~-gP~lIe~~t 266 (380)
...+|. +++++..++++|+..++.+. ||+.|++-.
T Consensus 129 ~s~~v~--~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~ 164 (591)
T PRK11269 129 WAVTVR--EPALVPRVFQQAFHLMRSGRPGPVLIDLPF 164 (591)
T ss_pred EEEEcC--CHHHHHHHHHHHHHHHhhCCCCeEEEEeCh
Confidence 666675 89999999999998888764 899998864
No 176
>PRK08273 thiamine pyrophosphate protein; Provisional
Probab=93.63 E-value=0.49 Score=50.52 Aligned_cols=108 Identities=14% Similarity=-0.012 Sum_probs=70.1
Q ss_pred HHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcceeeecccccCCcCHHHHHhhcC-
Q 016909 150 PHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYG- 228 (380)
Q Consensus 150 p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~G- 228 (380)
-+|-|.|.+. +.-.++++..|=|+++ ..-++.-|..-++|||+|+-.=..... ....+...|..+.++.+-
T Consensus 56 ~~Adgyar~t---g~~gv~~~t~GPG~~n---~~~gi~~A~~d~vPvl~I~G~~~~~~~--~~~~~q~~d~~~l~~~vt~ 127 (597)
T PRK08273 56 FMAVAHAKFT---GEVGVCLATSGPGAIH---LLNGLYDAKLDHVPVVAIVGQQARAAL--GGHYQQEVDLQSLFKDVAG 127 (597)
T ss_pred HHHHHHHHHh---CCCEEEEECCCccHHH---HHHHHHHHHhcCCCEEEEecCCchhhc--CCCCCCccCHHHHHHHHHH
Confidence 3566666543 3345666667888886 334566777889999999853221111 111111234556666655
Q ss_pred eeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEee
Q 016909 229 VRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTY 267 (380)
Q Consensus 229 ~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~ 267 (380)
-...+|+ +++.+...+.+|+..+..+.||+.|++-..
T Consensus 128 k~~~~v~--~~~~~~~~l~~A~~~A~~~~gPV~i~iP~D 164 (597)
T PRK08273 128 AFVQMVT--VPEQLRHLVDRAVRTALAERTVTAVILPND 164 (597)
T ss_pred HHeeEeC--CHHHHHHHHHHHHHHHhhCCCCEEEEeCcc
Confidence 4566676 888999999999988888889999987644
No 177
>PF01855 POR_N: Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg; InterPro: IPR002880 This family includes the N-terminal region of the pyruvate ferredoxin oxidoreductase, corresponding to the first two structural domains. This region is involved in inter subunit contacts []. Pyruvate oxidoreductase (POR) catalyses the final step in the fermentation of carbohydrates in anaerobic microorganisms []. This involves the oxidative decarboxylation of pyruvate with the participation of thiamine followed by the transfer of an acetyl moiety to coenzyme A for the synthesis of acetyl-CoA []. The family also includes pyruvate flavodoxin oxidoreductase as encoded by the nifJ gene in cyanobacterium which is required for growth on molecular nitrogen when iron is limited [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2PDA_B 2C3Y_A 2C3P_B 2UZA_A 2C3U_B 2C42_A 1B0P_B 2C3M_A 2C3O_B 1KEK_B ....
Probab=93.60 E-value=0.16 Score=47.66 Aligned_cols=112 Identities=19% Similarity=0.212 Sum_probs=67.3
Q ss_pred cHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCccee-eecccccCCcCHHHHHhhc
Q 016909 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAIS-TPISDQFRSDGAVVKGRAY 227 (380)
Q Consensus 149 ~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~i~-~~~~~~~~~~~~~~~a~a~ 227 (380)
+.+++|++++ +.++++.+-=.+++ ...|.|.+++-.++|+|+++-|-.-.-. .++.. ...|+ -.++-+
T Consensus 49 ~~~~~GAs~a------G~ra~t~ts~~Gl~--lm~e~l~~a~~~~~P~V~~~~~R~g~~~g~~~~~--~q~D~-~~~~d~ 117 (230)
T PF01855_consen 49 MEAAIGASAA------GARAMTATSGPGLN--LMAEPLYWAAGTELPIVIVVVQRAGPSPGLSTQP--EQDDL-MAARDS 117 (230)
T ss_dssp HHHHHHHHHT------T--EEEEEECCHHH--HHCCCHHHHHHTT--EEEEEEEB---SSSB--SB---SHHH-HHTTTS
T ss_pred HHHHHHHHhc------CCceEEeecCCccc--ccHhHHHHHHHcCCCEEEEEEECCCCCCCCcCcC--ChhHH-HHHHhc
Confidence 6678888876 23444444333332 3567789999999998888877543222 11111 11111 223467
Q ss_pred CeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCCCCCC
Q 016909 228 GVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTT 274 (380)
Q Consensus 228 G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R~~gHs~ 274 (380)
||.++... |+.+.++....|.+.+.+..-|+++-..+++. .|+.
T Consensus 118 ~~~vl~p~--~~QEa~d~~~~A~~lAe~~~~PViv~~Dg~~~-sh~~ 161 (230)
T PF01855_consen 118 GWIVLAPS--SPQEAYDMTLIAFNLAEKYQTPVIVLFDGFLC-SHSR 161 (230)
T ss_dssp S-EEEE----SHHHHHHHHHHHHHHHHHHTSEEEEEEECCCC-TC-E
T ss_pred CeEEEeCC--CHHHHHHHHHHHHHHHHHHCCCEEEEechhhh-cCcc
Confidence 88877665 99999999999999888899999999888775 3554
No 178
>PRK06725 acetolactate synthase 3 catalytic subunit; Validated
Probab=93.52 E-value=0.54 Score=49.90 Aligned_cols=108 Identities=20% Similarity=0.195 Sum_probs=73.3
Q ss_pred cHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcceeeecccccCCcCHHHHHhhcC
Q 016909 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 228 (380)
Q Consensus 149 ~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~G 228 (380)
.-+|-|.|.. .+.-.++++..|=|.++ ..-++.-|...+.|||+|+-........ .......|....++.+-
T Consensus 65 ~~mAdgyar~---tg~~gv~~~t~GpG~~N---~~~gla~A~~~~~Pvl~I~G~~~~~~~~--~~~~q~~d~~~l~~~it 136 (570)
T PRK06725 65 IHAAEGYARA---SGKVGVVFATSGPGATN---LVTGLADAYMDSIPLVVITGQVATPLIG--KDGFQEADVVGITVPVT 136 (570)
T ss_pred HHHHHHHHHH---hCCCeEEEECCCccHHH---HHHHHHHHhhcCcCEEEEecCCCccccc--CCCCcccchhhhhhccc
Confidence 3456666654 24445667777888886 3345666777899999998543322111 11122235667788777
Q ss_pred eeEEEEeCCCHHHHHHHHHHHHHHhhccC-CcEEEEEEe
Q 016909 229 VRSIRVDGNDALAIYSAVHAAREMAIGEG-RPILIEALT 266 (380)
Q Consensus 229 ~~~~~VdG~D~~av~~a~~~A~~~ar~~~-gP~lIe~~t 266 (380)
-...+|. +++.+.+.+++|+..++.+. ||+.|++-.
T Consensus 137 k~~~~v~--~~~~i~~~l~~A~~~A~s~~~GPV~l~iP~ 173 (570)
T PRK06725 137 KHNYQVR--DVNQLSRIVQEAFYIAESGRPGPVLIDIPK 173 (570)
T ss_pred eeEEEcC--CHHHHHHHHHHHHHHHhcCCCCcEEEcccc
Confidence 6677786 89999999999998888875 999998754
No 179
>PRK06466 acetolactate synthase 3 catalytic subunit; Validated
Probab=93.49 E-value=0.57 Score=49.73 Aligned_cols=108 Identities=19% Similarity=0.172 Sum_probs=73.3
Q ss_pred HHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcceeeecccccCCcCHHHHHhhcCe
Q 016909 150 PHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGV 229 (380)
Q Consensus 150 p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~G~ 229 (380)
-+|-|.|.+ .+.-.++++..|=|.++ ..-++..|..-++|||+|.-......... ..+-..|....++.+--
T Consensus 56 ~mAdgyar~---tg~~gv~~vt~GPG~~N---~l~gl~~A~~~~~Pvl~i~G~~~~~~~~~--~~~q~~d~~~l~~~itk 127 (574)
T PRK06466 56 HMADGYARA---TGKTGVVLVTSGPGATN---AITGIATAYMDSIPMVVLSGQVPSTLIGE--DAFQETDMVGISRPIVK 127 (574)
T ss_pred HHHHHHHHH---hCCCEEEEECCCccHHH---HHHHHHHHHhcCCCEEEEecCCCccccCC--Ccccccchhhhhhccce
Confidence 356666654 24445677777888886 34557778888999999986544322111 11112355667777666
Q ss_pred eEEEEeCCCHHHHHHHHHHHHHHhhcc-CCcEEEEEEee
Q 016909 230 RSIRVDGNDALAIYSAVHAAREMAIGE-GRPILIEALTY 267 (380)
Q Consensus 230 ~~~~VdG~D~~av~~a~~~A~~~ar~~-~gP~lIe~~t~ 267 (380)
...+|+ ++.++...+++|+..++.+ .||+.|++-..
T Consensus 128 ~s~~v~--~~~~~~~~~~rA~~~A~~~~~GPV~l~iP~D 164 (574)
T PRK06466 128 HSFMVK--HASEIPEIIKKAFYIAQSGRPGPVVVDIPKD 164 (574)
T ss_pred eEEEcC--CHHHHHHHHHHHHHHHhcCCCCcEEEEcCHh
Confidence 677777 8999999999999888877 49999988654
No 180
>PRK07586 hypothetical protein; Validated
Probab=93.48 E-value=0.56 Score=48.99 Aligned_cols=109 Identities=18% Similarity=0.088 Sum_probs=71.4
Q ss_pred cHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcceeeecccccCCcCHHHHHhhcC
Q 016909 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 228 (380)
Q Consensus 149 ~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~G 228 (380)
.-+|-|.|.+ .+.-.++++..|=|.++ ..-++-.|..-+.|||+|+-.-...... ....-..|....++.+-
T Consensus 52 ~~mAdgyar~---tg~~gv~~~t~GPG~~N---~~~gl~~A~~~~~Pvl~i~G~~~~~~~~--~~~~q~~d~~~~~~~vt 123 (514)
T PRK07586 52 TGAADGYARM---AGKPAATLLHLGPGLAN---GLANLHNARRARTPIVNIVGDHATYHRK--YDAPLTSDIEALARPVS 123 (514)
T ss_pred HHHHHHHHHH---HCCCEEEEecccHHHHH---HHHHHHHHHhcCCCEEEEecCCchhccC--CCcccccchhhhhcccc
Confidence 3456666654 23445666777888775 2334556778899999998653322111 11111235666777766
Q ss_pred eeEEEEeCCCHHHHHHHHHHHHHHhhcc-CCcEEEEEEee
Q 016909 229 VRSIRVDGNDALAIYSAVHAAREMAIGE-GRPILIEALTY 267 (380)
Q Consensus 229 ~~~~~VdG~D~~av~~a~~~A~~~ar~~-~gP~lIe~~t~ 267 (380)
-...+|. +++++.+.+++|+..++.+ .||+.|++-..
T Consensus 124 k~~~~v~--~~~~~~~~i~~A~~~a~~~~~GPV~l~iP~D 161 (514)
T PRK07586 124 GWVRRSE--SAADVAADAAAAVAAARGAPGQVATLILPAD 161 (514)
T ss_pred ceeeecC--CHHHHHHHHHHHHHHHhcCCCCcEEEEeccc
Confidence 5666776 8999999999999888887 69999988653
No 181
>PRK07789 acetolactate synthase 1 catalytic subunit; Validated
Probab=93.45 E-value=0.64 Score=49.75 Aligned_cols=108 Identities=20% Similarity=0.206 Sum_probs=71.6
Q ss_pred cHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcceeeecccccCCcCHHHHHhhcC
Q 016909 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 228 (380)
Q Consensus 149 ~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~G 228 (380)
.-+|.|.|.+ .+.-.++++..|=|.++ ..-++.-|..-++|||+|+-.-...... ...+...|....++.+-
T Consensus 82 ~~~Adgyar~---tg~~gv~~~t~GPG~~N---~l~gl~~A~~~~~PllvI~G~~~~~~~~--~~~~q~~d~~~l~~~~t 153 (612)
T PRK07789 82 GHAAEGYAQA---TGRVGVCMATSGPGATN---LVTPIADANMDSVPVVAITGQVGRGLIG--TDAFQEADIVGITMPIT 153 (612)
T ss_pred HHHHHHHHHH---hCCCEEEEECCCccHHH---HHHHHHHHhhcCCCEEEEecCCCccccC--CCcCcccchhhhhhcce
Confidence 3455566554 24445666777888886 3345666778889999998543322111 11122235666777766
Q ss_pred eeEEEEeCCCHHHHHHHHHHHHHHhhcc-CCcEEEEEEe
Q 016909 229 VRSIRVDGNDALAIYSAVHAAREMAIGE-GRPILIEALT 266 (380)
Q Consensus 229 ~~~~~VdG~D~~av~~a~~~A~~~ar~~-~gP~lIe~~t 266 (380)
-...+|+ +++++...+.+|+..++.+ .||+.|++-.
T Consensus 154 k~s~~v~--~~~~i~~~l~~A~~~A~~~~~GPV~l~iP~ 190 (612)
T PRK07789 154 KHNFLVT--DADDIPRVIAEAFHIASTGRPGPVLVDIPK 190 (612)
T ss_pred eEEEEcC--CHHHHHHHHHHHHHHHhcCCCceEEEEEcc
Confidence 6666776 8999999999999888876 4999998864
No 182
>PLN02470 acetolactate synthase
Probab=93.43 E-value=0.62 Score=49.58 Aligned_cols=108 Identities=20% Similarity=0.177 Sum_probs=72.8
Q ss_pred cHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcceeeecccccCCcCHHHHHhhcC
Q 016909 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 228 (380)
Q Consensus 149 ~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~G 228 (380)
.-+|.|.|.+. +.-.++++..|=|.++ ..-++..|..-+.|||+|.-.-..... ....+...|....++.+-
T Consensus 64 ~~~Adgyar~t---g~~gv~~~t~GPG~~N---~l~gia~A~~~~~Pvl~I~G~~~~~~~--~~~~~q~~d~~~l~~~~t 135 (585)
T PLN02470 64 VFAAEGYAKAS---GKVGVCIATSGPGATN---LVTGLADALLDSVPLVAITGQVPRRMI--GTDAFQETPIVEVTRSIT 135 (585)
T ss_pred HHHHHHHHHHh---CCCEEEEECCCccHHH---HHHHHHHHHhcCCcEEEEecCCChhhc--CCCcCcccchhhhhhhhe
Confidence 34566766653 3445677777888886 334566677889999999754332111 111112234556777776
Q ss_pred eeEEEEeCCCHHHHHHHHHHHHHHhhccC-CcEEEEEEe
Q 016909 229 VRSIRVDGNDALAIYSAVHAAREMAIGEG-RPILIEALT 266 (380)
Q Consensus 229 ~~~~~VdG~D~~av~~a~~~A~~~ar~~~-gP~lIe~~t 266 (380)
-...+|+ +++++.+++.+|+..++.++ ||+.|++-.
T Consensus 136 k~~~~v~--~~~~i~~~l~~A~~~A~s~~~GPV~l~iP~ 172 (585)
T PLN02470 136 KHNYLVM--DVEDIPRVIREAFFLASSGRPGPVLVDIPK 172 (585)
T ss_pred EEEEEcC--CHHHHHHHHHHHHHHhcCCCCCeEEEEecC
Confidence 6677776 89999999999998888875 999999864
No 183
>TIGR01504 glyox_carbo_lig glyoxylate carboligase. Glyoxylate carboligase, also called tartronate-semialdehyde synthase, releases CO2 while synthesizing a single molecule of tartronate semialdehyde from two molecules of glyoxylate. It is a thiamine pyrophosphate-dependent enzyme, closely related in sequence to the large subunit of acetolactate synthase. In the D-glycerate pathway, part of allantoin degradation in the Enterobacteriaceae, tartronate semialdehyde is converted to D-glycerate and then 3-phosphoglycerate, a product of glycolysis and entry point in the general metabolism.
Probab=93.40 E-value=0.62 Score=49.67 Aligned_cols=109 Identities=16% Similarity=0.164 Sum_probs=71.6
Q ss_pred HHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcceeeecccccCCcCHHHHHhhcCe
Q 016909 150 PHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGV 229 (380)
Q Consensus 150 p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~G~ 229 (380)
-+|-|.|.+.. +.-.++++..|=|.++ ..-++.-|...++|||+|+-.-....... ..+...|....++.+--
T Consensus 55 ~mAdgyaR~t~--g~~gv~~~t~GpG~~N---~~~gla~A~~~~~Pvl~I~G~~~~~~~~~--~~~q~~D~~~~~~~vtk 127 (588)
T TIGR01504 55 HMAEGYTRATA--GNIGVCIGTSGPAGTD---MITGLYSASADSIPILCITGQAPRARLHK--EDFQAVDIAAIAKPVSK 127 (588)
T ss_pred HHHHHHHHhcC--CCeEEEEECCCccHHH---HHHHHHHHhhcCCCEEEEecCCCccccCC--CcccccCHHHHhhhhce
Confidence 34555555420 2334555556888775 33456677788999999985444322111 11222356677887776
Q ss_pred eEEEEeCCCHHHHHHHHHHHHHHhhccC-CcEEEEEEee
Q 016909 230 RSIRVDGNDALAIYSAVHAAREMAIGEG-RPILIEALTY 267 (380)
Q Consensus 230 ~~~~VdG~D~~av~~a~~~A~~~ar~~~-gP~lIe~~t~ 267 (380)
...+|. +++++.+.+++|+..++.++ ||+.|++-..
T Consensus 128 ~~~~v~--~~~~i~~~i~~A~~~A~~~~~GPV~l~iP~D 164 (588)
T TIGR01504 128 MAVTVR--EAALVPRVLQQAFHLMRSGRPGPVLIDLPFD 164 (588)
T ss_pred EEEEcC--CHHHHHHHHHHHHHHHccCCCCeEEEEeCcc
Confidence 777776 89999999999998887764 8999988653
No 184
>PRK07710 acetolactate synthase catalytic subunit; Reviewed
Probab=93.30 E-value=0.62 Score=49.43 Aligned_cols=108 Identities=17% Similarity=0.185 Sum_probs=70.6
Q ss_pred cHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcceeeecccccCCcCHHHHHhhcC
Q 016909 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 228 (380)
Q Consensus 149 ~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~G 228 (380)
.-+|.|.|.+. +.-.++++..|=|.++ ..-++--|..-++|||+|.-......... ......|....++.+-
T Consensus 66 ~~~A~gyar~t---g~~gv~~~t~GPG~~N---~~~gl~~A~~~~~Pvl~ItG~~~~~~~~~--~~~q~~d~~~l~~~~t 137 (571)
T PRK07710 66 IHAAEGYARIS---GKPGVVIATSGPGATN---VVTGLADAMIDSLPLVVFTGQVATSVIGS--DAFQEADIMGITMPVT 137 (571)
T ss_pred HHHHHHHHHHh---CCCeEEEECCCccHHH---HHHHHHHHhhcCCCEEEEeccCCccccCC--CCccccchhhhhhccc
Confidence 44566666553 3345666667888876 33456677788999999986544321111 1111224556666655
Q ss_pred eeEEEEeCCCHHHHHHHHHHHHHHhhcc-CCcEEEEEEe
Q 016909 229 VRSIRVDGNDALAIYSAVHAAREMAIGE-GRPILIEALT 266 (380)
Q Consensus 229 ~~~~~VdG~D~~av~~a~~~A~~~ar~~-~gP~lIe~~t 266 (380)
-...+|. +++++...+++|+..++.+ .||+.|++-.
T Consensus 138 k~~~~v~--~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~ 174 (571)
T PRK07710 138 KHNYQVR--KASDLPRIIKEAFHIATTGRPGPVLIDIPK 174 (571)
T ss_pred ceEEecC--CHHHHHHHHHHHHHHHhcCCCCcEEEEcCh
Confidence 5566665 8889999999999888877 4999998864
No 185
>PRK08978 acetolactate synthase 2 catalytic subunit; Reviewed
Probab=93.22 E-value=0.56 Score=49.44 Aligned_cols=108 Identities=20% Similarity=0.191 Sum_probs=70.7
Q ss_pred cHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcceeeecccccCCcCHHHHHhhcC
Q 016909 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 228 (380)
Q Consensus 149 ~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~G 228 (380)
.-+|.|.|.+. +.-.++++..|=|.++ ..-++--|..-++|||+|.-.-....... ......|....++.+-
T Consensus 51 ~~~Adgyar~s---g~~gv~~~t~GpG~~n---~~~~l~~A~~~~~Pvl~i~g~~~~~~~~~--~~~q~~d~~~~~~~~t 122 (548)
T PRK08978 51 AMAAIGYARAT---GKVGVCIATSGPGATN---LITGLADALLDSVPVVAITGQVSSPLIGT--DAFQEIDVLGLSLACT 122 (548)
T ss_pred HHHHHHHHHHh---CCCEEEEECCCCcHHH---HHHHHHHHhhcCCCEEEEecCCCccccCC--CCCcccchhccccCce
Confidence 34566666553 4455667777888886 34557778888999999985433211111 1111124445566665
Q ss_pred eeEEEEeCCCHHHHHHHHHHHHHHhhcc-CCcEEEEEEe
Q 016909 229 VRSIRVDGNDALAIYSAVHAAREMAIGE-GRPILIEALT 266 (380)
Q Consensus 229 ~~~~~VdG~D~~av~~a~~~A~~~ar~~-~gP~lIe~~t 266 (380)
-...+|+ +++++...+++|+..++.+ .||+.|++-.
T Consensus 123 k~~~~v~--~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~ 159 (548)
T PRK08978 123 KHSFLVQ--SLEELPEIMAEAFEIASSGRPGPVLVDIPK 159 (548)
T ss_pred eeEEEEC--CHHHHHHHHHHHHHHHhcCCCCcEEEecCh
Confidence 5566776 8999999999999888876 4999998764
No 186
>TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type. Several isozymes of this enzyme are found in E. coli K12, one of which contains a frameshift in the large subunit gene and is not expressed.
Probab=93.19 E-value=0.68 Score=48.90 Aligned_cols=107 Identities=19% Similarity=0.184 Sum_probs=71.8
Q ss_pred HHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcceeeecccccCCcCHHHHHhhcCe
Q 016909 150 PHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGV 229 (380)
Q Consensus 150 p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~G~ 229 (380)
-+|.|.|... +.-.++++..|=|.++ ..-++.-|..-++|||+|+-.-...... .......|....++.+--
T Consensus 53 ~~Adgyar~t---g~~gv~~~t~GpG~~n---~l~~i~~A~~~~~Pvl~i~g~~~~~~~~--~~~~q~~d~~~~~~~~tk 124 (558)
T TIGR00118 53 HAADGYARAS---GKVGVVLVTSGPGATN---LVTGIATAYMDSIPMVVFTGQVPTSLIG--SDAFQEADILGITMPITK 124 (558)
T ss_pred HHHHHHHHHh---CCCEEEEECCCCcHHH---HHHHHHHHHhcCCCEEEEecCCCccccC--CCCCcccChhhhhcCccc
Confidence 4466666543 4445677777888886 3456777888899999998643221111 111112245567777776
Q ss_pred eEEEEeCCCHHHHHHHHHHHHHHhhccC-CcEEEEEEe
Q 016909 230 RSIRVDGNDALAIYSAVHAAREMAIGEG-RPILIEALT 266 (380)
Q Consensus 230 ~~~~VdG~D~~av~~a~~~A~~~ar~~~-gP~lIe~~t 266 (380)
...+|+ +++++...+.+|+..+..++ ||+.|++-.
T Consensus 125 ~~~~v~--~~~~~~~~v~~A~~~A~~~~~GPV~i~iP~ 160 (558)
T TIGR00118 125 HSFQVK--SAEDIPRIIKEAFHIATTGRPGPVLVDLPK 160 (558)
T ss_pred eeEEeC--CHHHHHHHHHHHHHHHhcCCCCeEEEEcCh
Confidence 777786 88999999999998887774 899998864
No 187
>PRK12474 hypothetical protein; Provisional
Probab=92.97 E-value=0.83 Score=47.84 Aligned_cols=108 Identities=18% Similarity=0.022 Sum_probs=70.0
Q ss_pred HHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcceeeecccccCCcCHHHHHhhcCe
Q 016909 150 PHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGV 229 (380)
Q Consensus 150 p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~G~ 229 (380)
-+|-|.|.+ .+.-.++++..|=|.++ ..-++-.|..-+.|||+|+-........ ...+-..|....++.+--
T Consensus 57 ~mAdgYaR~---tg~~gv~~~t~GpG~~N---~~~gl~~A~~d~~Pvl~i~G~~~~~~~~--~~~~q~~d~~~~~~~vtk 128 (518)
T PRK12474 57 GAADGYGRI---AGKPAVTLLHLGPGLAN---GLANLHNARRAASPIVNIVGDHAVEHLQ--YDAPLTSDIDGFARPVSR 128 (518)
T ss_pred HHHHHHHHH---hCCCEEEEEccchhHhH---hHHHHHHHhhcCCCEEEEeccCchhhcC--CCCccccCHHHhhhcccc
Confidence 355566654 34455677777888775 2334556777889999998643321111 111111356667776655
Q ss_pred eEEEEeCCCHHHHHHHHHHHHHHhhccC-CcEEEEEEee
Q 016909 230 RSIRVDGNDALAIYSAVHAAREMAIGEG-RPILIEALTY 267 (380)
Q Consensus 230 ~~~~VdG~D~~av~~a~~~A~~~ar~~~-gP~lIe~~t~ 267 (380)
...+|+ +++++..++++|+..+..+. ||++|++-..
T Consensus 129 ~~~~v~--~~~~~~~~i~rA~~~A~~~~~GPV~l~iP~D 165 (518)
T PRK12474 129 WVHRSA--SAGAVDSDVARAVQAAQSAPGGIATLIMPAD 165 (518)
T ss_pred eeeecC--CHHHHHHHHHHHHHHHhcCCCCcEEEEechh
Confidence 555665 89999999999998777765 8999988643
No 188
>PRK09107 acetolactate synthase 3 catalytic subunit; Validated
Probab=92.92 E-value=0.74 Score=49.14 Aligned_cols=108 Identities=19% Similarity=0.182 Sum_probs=71.6
Q ss_pred cHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcceeeecccccCCcCHHHHHhhcC
Q 016909 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 228 (380)
Q Consensus 149 ~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~G 228 (380)
.-+|-|.|.. .+.-.++++..|=|.++ ..-++..|...+.|||+|.-.-....... ..+...|....++.+-
T Consensus 62 ~~mAdgyar~---tg~~gv~~~t~GPG~~N---~l~gia~A~~~~~Pvl~i~G~~~~~~~~~--~~~q~~d~~~l~~~vt 133 (595)
T PRK09107 62 GHAAEGYARS---TGKPGVVLVTSGPGATN---AVTPLQDALMDSIPLVCITGQVPTHLIGS--DAFQECDTVGITRPCT 133 (595)
T ss_pred HHHHHHHHHH---hCCCEEEEECCCccHhH---HHHHHHHHhhcCCCEEEEEcCCChhhcCC--CCCcccchhhhhhhhe
Confidence 3445666554 24445667777888886 33456677788999999986544322111 1111224556666665
Q ss_pred eeEEEEeCCCHHHHHHHHHHHHHHhhccC-CcEEEEEEe
Q 016909 229 VRSIRVDGNDALAIYSAVHAAREMAIGEG-RPILIEALT 266 (380)
Q Consensus 229 ~~~~~VdG~D~~av~~a~~~A~~~ar~~~-gP~lIe~~t 266 (380)
-...+|+ +++++...+.+|+..++.+. ||+.|++-.
T Consensus 134 k~~~~v~--~~~~i~~~l~~A~~~A~s~~~GPV~l~iP~ 170 (595)
T PRK09107 134 KHNWLVK--DVNDLARVIHEAFHVATSGRPGPVVVDIPK 170 (595)
T ss_pred EEEEEeC--CHHHHHHHHHHHHHHhcCCCCceEEEecCC
Confidence 5666776 89999999999999888874 899998754
No 189
>cd07036 TPP_PYR_E1-PDHc-beta_like Pyrimidine (PYR) binding domain of the beta subunits of the E1 components of human pyruvate dehydrogenase complex (E1- PDHc) and related proteins. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain of the beta subunits of the E1 components of: human pyruvate dehydrogenase complex (E1- PDHc), the acetoin dehydrogenase complex (ADC), and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC), subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domain
Probab=92.86 E-value=0.72 Score=41.06 Aligned_cols=99 Identities=14% Similarity=0.057 Sum_probs=59.2
Q ss_pred ccHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHH-HHHHHc--------CCCEEEEEEcCCcceeeecccccCCc
Q 016909 148 QLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAAL-NFSAVT--------EAPVIFICRNNGWAISTPISDQFRSD 218 (380)
Q Consensus 148 ~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal-~~A~~~--------~Lpvi~vv~NN~~~i~~~~~~~~~~~ 218 (380)
.++.|.|+|+. +.++|+.+.=+.|.. -.+|-+ +-++.+ ++||++++..-+++..++++ +..
T Consensus 56 ~vg~AaGlA~~------G~~pi~~~~~a~Fl~-ra~dQi~~~~a~~~~~~~~~~~~pv~i~~~~gg~~~~G~th---s~~ 125 (167)
T cd07036 56 IVGLAVGAAMN------GLRPIVEIMFADFAL-PAFDQIVNEAAKLRYMSGGQFKVPIVIRGPNGGGIGGGAQH---SQS 125 (167)
T ss_pred HHHHHHHHHHc------CCEEEEEeehHHHHH-HHHHHHHHHHHHHHHhcCCCccCCEEEEEeCCCCCCcChhh---hhh
Confidence 35666777664 235555433344433 233433 444443 58999999776665444432 223
Q ss_pred CHHHHHhhc-CeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEE
Q 016909 219 GAVVKGRAY-GVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIE 263 (380)
Q Consensus 219 ~~~~~a~a~-G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe 263 (380)
++ ...+++ |+.++.-. |+.+....++.+++. ++|+++-
T Consensus 126 ~~-a~lr~iPg~~V~~Ps--d~~e~~~~l~~~~~~----~~P~~~~ 164 (167)
T cd07036 126 LE-AWFAHIPGLKVVAPS--TPYDAKGLLKAAIRD----DDPVIFL 164 (167)
T ss_pred HH-HHHhcCCCCEEEeeC--CHHHHHHHHHHHHhC----CCcEEEE
Confidence 33 445555 67666654 999999999998864 6899873
No 190
>TIGR03394 indol_phenyl_DC indolepyruvate/phenylpyruvate decarboxylase, Azospirillum family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. This model represents a clade that includes a Azospirillum brasilense member active as both phenylpyruvate decarboxylase and indolepyruvate decarboxylase.
Probab=92.82 E-value=0.76 Score=48.41 Aligned_cols=109 Identities=18% Similarity=0.123 Sum_probs=68.1
Q ss_pred HHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcceeeec---ccccC-CcCHHHHHhh
Q 016909 151 HAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPI---SDQFR-SDGAVVKGRA 226 (380)
Q Consensus 151 ~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~i~~~~---~~~~~-~~~~~~~a~a 226 (380)
+|-|.|.+ .+.-.++++..|=|.++ ..-++..|...++|||+|.-.......... +.+.. .++..+.++.
T Consensus 53 ~Adgyar~---tg~~gv~~~t~GpG~~n---~~~gia~A~~~~~Pvl~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (535)
T TIGR03394 53 AADAAARY---RGTLGVAAVTYGAGAFN---MVNAIAGAYAEKSPVVVISGAPGTTEGNAGLLLHHQGRTLDSQFQVFKE 126 (535)
T ss_pred HHhHHHHh---hCCceEEEEecchHHHh---hhhHHHHHhhcCCCEEEEECCCCcccccCCceeEeeccchHHHHHhhhh
Confidence 45566654 34455677777999886 234577778889999999865432211100 01110 1123455666
Q ss_pred cCeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEee
Q 016909 227 YGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTY 267 (380)
Q Consensus 227 ~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~ 267 (380)
+--...+|. +++.+.+++++|+..+....||+.|++-..
T Consensus 127 vtk~~~~v~--~~~~~~~~~~~A~~~a~~~~gPv~i~iP~D 165 (535)
T TIGR03394 127 VTCDQAVLD--DPATAPAEIARVLGSARELSRPVYLEIPRD 165 (535)
T ss_pred heEEEEEeC--ChHHhHHHHHHHHHHHHHCCCCEEEEechh
Confidence 544455665 777777888888877777789999988654
No 191
>PRK08155 acetolactate synthase catalytic subunit; Validated
Probab=92.82 E-value=0.86 Score=48.23 Aligned_cols=108 Identities=18% Similarity=0.145 Sum_probs=69.5
Q ss_pred cHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcceeeecccccCCcCHHHHHhhcC
Q 016909 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 228 (380)
Q Consensus 149 ~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~G 228 (380)
.-+|.|.|.+. +.-.++++..|=|.++ ..-++.-|...++|||+|.-.-...... ......-|....++.+-
T Consensus 64 ~~~Adgyar~t---g~~gv~~~t~GpG~~N---~l~gl~~A~~~~~Pvl~i~G~~~~~~~~--~~~~q~~d~~~~~~~~t 135 (564)
T PRK08155 64 GFIAQGMARTT---GKPAVCMACSGPGATN---LVTAIADARLDSIPLVCITGQVPASMIG--TDAFQEVDTYGISIPIT 135 (564)
T ss_pred HHHHHHHHHHc---CCCeEEEECCCCcHHH---HHHHHHHHHhcCCCEEEEeccCCccccc--CCCccccchhhhhhccc
Confidence 34566776653 3334555566888876 2345667888899999998543322111 11111124445566655
Q ss_pred eeEEEEeCCCHHHHHHHHHHHHHHhhcc-CCcEEEEEEe
Q 016909 229 VRSIRVDGNDALAIYSAVHAAREMAIGE-GRPILIEALT 266 (380)
Q Consensus 229 ~~~~~VdG~D~~av~~a~~~A~~~ar~~-~gP~lIe~~t 266 (380)
-...+|+ +++++...+.+|+..++.+ .||+.|++-.
T Consensus 136 k~~~~v~--~~~~~~~~i~~A~~~a~~~~~GPV~i~iP~ 172 (564)
T PRK08155 136 KHNYLVR--DIEELPQVISDAFRIAQSGRPGPVWIDIPK 172 (564)
T ss_pred eEEEEcC--CHHHHHHHHHHHHHHHhcCCCCcEEEEcCH
Confidence 5566666 8999999999999888877 4999999854
No 192
>PRK06965 acetolactate synthase 3 catalytic subunit; Validated
Probab=92.78 E-value=0.99 Score=48.07 Aligned_cols=108 Identities=20% Similarity=0.133 Sum_probs=70.0
Q ss_pred HHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcceeeecccccCCcCHHHHHhhcCe
Q 016909 150 PHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGV 229 (380)
Q Consensus 150 p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~G~ 229 (380)
-+|-|.|.+. +.-.++++..|=|.++ ..-++..|...++|||+|.-.-..... ........|....++.+--
T Consensus 73 ~~AdgYar~t---g~~gv~~~t~GpG~~N---~l~gl~~A~~~~~Pvl~i~G~~~~~~~--~~~~~q~~d~~~l~~~itk 144 (587)
T PRK06965 73 HAADGYARAT---GKVGVALVTSGPGVTN---AVTGIATAYMDSIPMVVISGQVPTAAI--GQDAFQECDTVGITRPIVK 144 (587)
T ss_pred HHHHHHHHHh---CCCeEEEECCCccHHH---HHHHHHHHhhcCCCEEEEecCCCcccc--CCCCcccccHHHHhcCCcc
Confidence 3566666553 3445666666888776 234566677788999999743221110 0111112355566777666
Q ss_pred eEEEEeCCCHHHHHHHHHHHHHHhhcc-CCcEEEEEEee
Q 016909 230 RSIRVDGNDALAIYSAVHAAREMAIGE-GRPILIEALTY 267 (380)
Q Consensus 230 ~~~~VdG~D~~av~~a~~~A~~~ar~~-~gP~lIe~~t~ 267 (380)
...+|. +++++.+.+.+|+..++.+ .||+.|++-..
T Consensus 145 ~~~~v~--~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~D 181 (587)
T PRK06965 145 HNFLVK--DVRDLAETVKKAFYIARTGRPGPVVVDIPKD 181 (587)
T ss_pred eeEEeC--CHHHHHHHHHHHHHHHhcCCCCeEEEEeChh
Confidence 677777 8999999999999888887 49999987553
No 193
>PRK08979 acetolactate synthase 3 catalytic subunit; Validated
Probab=92.72 E-value=0.87 Score=48.31 Aligned_cols=108 Identities=19% Similarity=0.171 Sum_probs=71.3
Q ss_pred cHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcceeeecccccCCcCHHHHHhhcC
Q 016909 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 228 (380)
Q Consensus 149 ~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~G 228 (380)
.-+|-|.|.+. +.-.++++..|=|.++ ..-++--|...++|||+|.-.-...... ...+...|....++.+-
T Consensus 55 ~~mAdgyar~t---g~~gv~~~t~GpG~~n---~l~gia~A~~~~~Pvl~i~G~~~~~~~~--~~~~q~~d~~~~~~~it 126 (572)
T PRK08979 55 VHMADGYARAT---GKVGVVLVTSGPGATN---TITGIATAYMDSIPMVVLSGQVPSNLIG--NDAFQECDMIGISRPVV 126 (572)
T ss_pred HHHHHHHHHHh---CCCeEEEECCCchHhH---HHHHHHHHhhcCCCEEEEecCCCccccC--CCCCcccchhHHhhhce
Confidence 44566666553 4445666666888876 2345666778889999998543322111 11122235566777766
Q ss_pred eeEEEEeCCCHHHHHHHHHHHHHHhhccC-CcEEEEEEe
Q 016909 229 VRSIRVDGNDALAIYSAVHAAREMAIGEG-RPILIEALT 266 (380)
Q Consensus 229 ~~~~~VdG~D~~av~~a~~~A~~~ar~~~-gP~lIe~~t 266 (380)
-...+|+ +++++...+++|+..++.+. ||+.|++-.
T Consensus 127 k~~~~v~--~~~~~~~~l~~A~~~A~~~~~GPV~l~iP~ 163 (572)
T PRK08979 127 KHSFLVK--DAEDIPEIIKKAFYIASTGRPGPVVIDLPK 163 (572)
T ss_pred eEEEecC--CHHHHHHHHHHHHHHHhCCCCCcEEEecCH
Confidence 6677777 89999999999998888765 899998754
No 194
>PF02779 Transket_pyr: Transketolase, pyrimidine binding domain; InterPro: IPR005475 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; PDB: 2BFF_B 2BEV_B 1OLS_B 1V16_B 2BFD_B 1V1M_B 2BFC_B 1X80_B 1X7W_B 1OLX_B ....
Probab=92.69 E-value=1.4 Score=39.35 Aligned_cols=108 Identities=17% Similarity=0.095 Sum_probs=62.2
Q ss_pred ccHHHHHHHHHhhhcCCCceeEEEeCccccC-cchHHHHHH-HHHHcCCCEEEEEEcCCcceeeecccccCCcCHHHHHh
Q 016909 148 QLPHAVGAAYALKMDRKDACAVTYFGDGGTS-EGDFHAALN-FSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGR 225 (380)
Q Consensus 148 ~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~-eG~~~Eal~-~A~~~~Lpvi~vv~NN~~~i~~~~~~~~~~~~~~~~a~ 225 (380)
.+++|+|+|++-+ ...+++..+++=... +-..++.+. ..+..++|+. |+..-+++.........+..+ ....+
T Consensus 60 ~vg~a~GlA~~G~---~~~~~~~~f~~F~~~~q~r~~~~~~~~~~~~~~~v~-v~~~~g~~~~~~G~tH~s~~d-~~~~~ 134 (178)
T PF02779_consen 60 MVGMAAGLALAGG---LRPPVESTFADFLTPAQIRAFDQIRNDMAYGQLPVP-VGTRAGLGYGGDGGTHHSIED-EAILR 134 (178)
T ss_dssp HHHHHHHHHHHSS---SEEEEEEEEGGGGGGGHHHHHHHHHHHHHHHTS-EE-EEEEESGGGSTTGTTTSSSSH-HHHHH
T ss_pred ccceeeeeeeccc---ccceeEeeccccccccchhhhhhhhhhhhcccceec-ceeecCccccccccccccccc-ccccc
Confidence 4677888887621 123444445433220 123455555 6778899988 665555533322222233333 34444
Q ss_pred hc-CeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEE
Q 016909 226 AY-GVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEA 264 (380)
Q Consensus 226 a~-G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~ 264 (380)
++ |+.++.-. |+.++...++.++++ +.++|++|-.
T Consensus 135 ~iPg~~v~~Ps--d~~e~~~~l~~a~~~--~~~~P~~ir~ 170 (178)
T PF02779_consen 135 SIPGMKVVVPS--DPAEAKGLLRAAIRR--ESDGPVYIRE 170 (178)
T ss_dssp TSTTEEEEE-S--SHHHHHHHHHHHHHS--SSSSEEEEEE
T ss_pred cccccccccCC--CHHHHHHHHHHHHHh--CCCCeEEEEe
Confidence 44 88777655 999999999999873 2479998854
No 195
>TIGR02720 pyruv_oxi_spxB pyruvate oxidase. Members of this family are examples of pyruvate oxidase (EC 1.2.3.3), an enzyme with FAD and TPP as cofactors that catalyzes the reaction pyruvate + phosphate + O2 + H2O = acetyl phosphate + CO2 + H2O2. It should not be confused with pyruvate dehydrogenase [cytochrome] (EC 1.2.2.2) as in E. coli PoxB, although the E. coli enzyme is closely homologous and has pyruvate oxidase as an alternate name.
Probab=92.69 E-value=1.1 Score=47.61 Aligned_cols=107 Identities=14% Similarity=0.010 Sum_probs=68.8
Q ss_pred HHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcceeeecccccCCcCHHHHHhhcCee
Q 016909 151 HAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVR 230 (380)
Q Consensus 151 ~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~G~~ 230 (380)
+|-|.|.+ .++-.++++..|=|.++ ..-++..|...++|||+|+-.-..... ........+....++.+--.
T Consensus 53 ~Adgyar~---tgk~gv~~~t~GPG~~n---~~~~i~~A~~~~~Pvl~I~G~~~~~~~--~~~~~q~id~~~~~~~vtk~ 124 (575)
T TIGR02720 53 AAAADAKL---TGKIGVCFGSAGPGATH---LLNGLYDAKEDHVPVLALVGQVPTTGM--NMDTFQEMNENPIYADVAVY 124 (575)
T ss_pred HHHHHHHh---hCCceEEEeCCCCcHHH---HHHHHHHHhhcCCCEEEEecCCccccC--CCCCcceechhhhhhhcceE
Confidence 45555543 34456777777888886 335566778889999999865432211 11111112444556666555
Q ss_pred EEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEee
Q 016909 231 SIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTY 267 (380)
Q Consensus 231 ~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~ 267 (380)
..+|. +++.+...+.+|+..+....||+.|++-..
T Consensus 125 ~~~v~--~~~~~~~~i~~A~~~A~~~~GPV~l~iP~D 159 (575)
T TIGR02720 125 NRTAM--TAESLPHVIDEAIRRAYAHNGVAVVTIPVD 159 (575)
T ss_pred EEEeC--CHHHHHHHHHHHHHHHhhCCCCEEEEECcc
Confidence 55665 788888888888887778889999988644
No 196
>PRK08199 thiamine pyrophosphate protein; Validated
Probab=92.62 E-value=1 Score=47.67 Aligned_cols=108 Identities=14% Similarity=0.092 Sum_probs=69.3
Q ss_pred cHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcceeeecccccCCcCHHHHHhhcC
Q 016909 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 228 (380)
Q Consensus 149 ~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~G 228 (380)
.-+|.|.|.+ .+.-.++++..|=|.++ ..-++..|...++|||+|.-.-...... ......-|....++.+=
T Consensus 59 ~~~Adgyar~---tg~~gv~~~t~GpG~~N---~~~gi~~A~~~~~Pvl~i~g~~~~~~~~--~~~~q~~d~~~l~~~~t 130 (557)
T PRK08199 59 AMMAEAYGKL---TGRPGICFVTRGPGATN---ASIGVHTAFQDSTPMILFVGQVARDFRE--REAFQEIDYRRMFGPMA 130 (557)
T ss_pred HHHHHHHHHh---cCCCEEEEeCCCccHHH---HHHHHHHHhhcCCCEEEEecCCccccCC--CCcccccCHHHhhhhhh
Confidence 3456666654 33445666677888886 3455667778899999998543221111 11111124555666554
Q ss_pred eeEEEEeCCCHHHHHHHHHHHHHHhhcc-CCcEEEEEEe
Q 016909 229 VRSIRVDGNDALAIYSAVHAAREMAIGE-GRPILIEALT 266 (380)
Q Consensus 229 ~~~~~VdG~D~~av~~a~~~A~~~ar~~-~gP~lIe~~t 266 (380)
-...+|. +++++...+.+|+..+..+ .||+.|++-.
T Consensus 131 k~~~~v~--~~~~~~~~~~~A~~~A~~~~~GPV~l~iP~ 167 (557)
T PRK08199 131 KWVAEID--DAARIPELVSRAFHVATSGRPGPVVLALPE 167 (557)
T ss_pred ceeeecC--CHHHHHHHHHHHHHHHhcCCCCcEEEEcCH
Confidence 4455664 8999999999999888777 4899998763
No 197
>PRK06882 acetolactate synthase 3 catalytic subunit; Validated
Probab=92.60 E-value=0.94 Score=48.01 Aligned_cols=108 Identities=19% Similarity=0.188 Sum_probs=70.4
Q ss_pred HHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcceeeecccccCCcCHHHHHhhcCe
Q 016909 150 PHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGV 229 (380)
Q Consensus 150 p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~G~ 229 (380)
-+|-|.|.+. +.-.++++..|=|.++ ..-++-.|...++|||+|.-.-...... .......|....++.+--
T Consensus 56 ~mAdgyar~t---g~~gv~~~t~GpG~~N---~l~~i~~A~~~~~Pvlvi~G~~~~~~~~--~~~~q~~d~~~l~~~vtk 127 (574)
T PRK06882 56 HMADGYARST---GKVGCVLVTSGPGATN---AITGIATAYTDSVPLVILSGQVPSNLIG--TDAFQECDMLGISRPVVK 127 (574)
T ss_pred HHHHHHHHhh---CCCeEEEECCCccHHH---HHHHHHHHhhcCCCEEEEecCCCccccC--CCcccccchhhhhhcccc
Confidence 4556665542 3445666667888876 2345667788899999998544322111 111112355667776665
Q ss_pred eEEEEeCCCHHHHHHHHHHHHHHhhcc-CCcEEEEEEee
Q 016909 230 RSIRVDGNDALAIYSAVHAAREMAIGE-GRPILIEALTY 267 (380)
Q Consensus 230 ~~~~VdG~D~~av~~a~~~A~~~ar~~-~gP~lIe~~t~ 267 (380)
...+|. +++++...+.+|+..++.+ .||+.|++-..
T Consensus 128 ~s~~v~--~~~~~~~~l~~A~~~A~~~~~GPV~l~iP~D 164 (574)
T PRK06882 128 HSFIVK--NAEDIPSTIKKAFYIASTGRPGPVVIDIPKD 164 (574)
T ss_pred eEEEeC--CHHHHHHHHHHHHHHHhcCCCCCEEEecCHH
Confidence 667776 8899999999999877775 59999988653
No 198
>TIGR00204 dxs 1-deoxy-D-xylulose-5-phosphate synthase. DXP synthase is a thiamine diphosphate-dependent enzyme related to transketolase and the pyruvate dehydrogenase E1-beta subunit. By an acyloin condensation of pyruvate with glyceraldehyde 3-phosphate, it produces 1-deoxy-D-xylulose 5-phosphate, a precursor of thiamine diphosphate (TPP), pyridoxal phosphate, and the isoprenoid building block isopentenyl diphosphate (IPP).
Probab=92.44 E-value=0.79 Score=49.23 Aligned_cols=103 Identities=10% Similarity=0.068 Sum_probs=61.8
Q ss_pred ccHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcce-eeecccccCCcCHHHHHhh
Q 016909 148 QLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAI-STPISDQFRSDGAVVKGRA 226 (380)
Q Consensus 148 ~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~i-~~~~~~~~~~~~~~~~a~a 226 (380)
.++.|.|+|++ +.++|+.+ =+.|.+=.+-+-.+.++..++||++++...++.. +++++.+ ..+++-...-
T Consensus 364 ~vg~AaGlA~~------G~~Pvv~~-~a~Fl~ra~dQi~~~~a~~~lpV~i~~~~~G~~g~dG~tH~~--~~dia~lr~i 434 (617)
T TIGR00204 364 AVTFAAGMAIE------GYKPFVAI-YSTFLQRAYDQVVHDVCIQKLPVLFAIDRAGIVGADGETHQG--AFDISYLRCI 434 (617)
T ss_pred HHHHHHHHHHC------CCEEEEEe-cHHHHHHHHHHHHHHHHhcCCCEEEEEECCCcCCCCCccccc--chHHHHHhcC
Confidence 34567776653 23444444 4556543333344678889999999998777642 2333322 2344322222
Q ss_pred cCeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEE
Q 016909 227 YGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEA 264 (380)
Q Consensus 227 ~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~ 264 (380)
-|+.++.-- |+.++...++.|++. .++|++|-.
T Consensus 435 Pgl~V~~Ps--d~~e~~~~l~~a~~~---~~~Pv~ir~ 467 (617)
T TIGR00204 435 PNMVIMAPS--DENELRQMLYTGYHY---DDGPIAVRY 467 (617)
T ss_pred CCcEEEeeC--CHHHHHHHHHHHHhC---CCCCEEEEE
Confidence 366666544 899999999998863 358998843
No 199
>PRK06048 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=92.38 E-value=1 Score=47.61 Aligned_cols=108 Identities=19% Similarity=0.169 Sum_probs=69.6
Q ss_pred cHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcceeeecccccCCcCHHHHHhhcC
Q 016909 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 228 (380)
Q Consensus 149 ~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~G 228 (380)
.-+|.|.|.+. +.-.++++..|=|.++ ..-++--|..-+.|||+|.-.-..... ........|....++.+-
T Consensus 58 ~~~Adgyar~t---g~~~v~~~t~GpG~~n---~~~gl~~A~~~~~Pvl~i~G~~~~~~~--~~~~~q~~d~~~~~~~it 129 (561)
T PRK06048 58 AHAADGYARAT---GKVGVCVATSGPGATN---LVTGIATAYMDSVPIVALTGQVPRSMI--GNDAFQEADITGITMPIT 129 (561)
T ss_pred HHHHHHHHHHh---CCCeEEEECCCCcHHH---HHHHHHHHhhcCCCEEEEeccCCcccc--CCCCccccchhhhccCcc
Confidence 44566666553 4445667777888886 335566777889999999743222111 111111224555666665
Q ss_pred eeEEEEeCCCHHHHHHHHHHHHHHhhcc-CCcEEEEEEe
Q 016909 229 VRSIRVDGNDALAIYSAVHAAREMAIGE-GRPILIEALT 266 (380)
Q Consensus 229 ~~~~~VdG~D~~av~~a~~~A~~~ar~~-~gP~lIe~~t 266 (380)
-...+|. ++.++..++.+|+..++.+ .||+.|++-.
T Consensus 130 k~s~~v~--~~~~i~~~i~~A~~~A~~~~~GPV~l~iP~ 166 (561)
T PRK06048 130 KHNYLVQ--DAKDLPRIIKEAFHIASTGRPGPVLIDLPK 166 (561)
T ss_pred eEEEEeC--CHHHHHHHHHHHHHHHhcCCCCeEEEecCh
Confidence 5566676 8899999999999888776 4899998854
No 200
>PRK09627 oorA 2-oxoglutarate-acceptor oxidoreductase subunit OorA; Reviewed
Probab=92.36 E-value=0.71 Score=46.53 Aligned_cols=115 Identities=17% Similarity=0.186 Sum_probs=74.0
Q ss_pred cHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCC-cceeeecccccCCcCH-HHHHhh
Q 016909 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPISDQFRSDGA-VVKGRA 226 (380)
Q Consensus 149 ~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~-~~i~~~~~~~~~~~~~-~~~a~a 226 (380)
+.+|+|+++| +.++++.+.=+++. ..+|.+.+|+-..+|+|+++.+-. -+...++... ..|+ ..+..+
T Consensus 60 ~~~a~GAs~a------G~Ra~taTSg~G~~--lm~E~~~~a~~~e~P~V~~~~~R~GpstG~p~~~~--q~D~~~~~~~~ 129 (375)
T PRK09627 60 ISVALGASMS------GVKSMTASSGPGIS--LKAEQIGLGFIAEIPLVIVNVMRGGPSTGLPTRVA--QGDVNQAKNPT 129 (375)
T ss_pred HHHHHHHHhh------CCCEEeecCCchHH--HHhhHHHHHHhccCCEEEEEeccCCCcCCCCCccc--hHHHHHHhcCC
Confidence 6778888887 33455555444443 467999999999999988776643 1111121111 1122 223333
Q ss_pred cC-eeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCCCCCCC
Q 016909 227 YG-VRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTS 275 (380)
Q Consensus 227 ~G-~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R~~gHs~~ 275 (380)
+| .+.+.+.-.|+.+++....+|++.+.+..-|++|-..+ +. +|+..
T Consensus 130 hgd~~~ivl~p~~~qEa~d~t~~Af~lAE~~~~PViv~~D~-~l-sh~~~ 177 (375)
T PRK09627 130 HGDFKSIALAPGSLEEAYTETVRAFNLAERFMTPVFLLLDE-TV-GHMYG 177 (375)
T ss_pred CCCcCcEEEeCCCHHHHHHHHHHHHHHHHHHcCceEEecch-HH-hCCee
Confidence 32 22334566699999999999999888889999998887 44 67643
No 201
>PRK07282 acetolactate synthase catalytic subunit; Reviewed
Probab=92.11 E-value=1 Score=47.69 Aligned_cols=108 Identities=19% Similarity=0.161 Sum_probs=70.7
Q ss_pred cHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcceeeecccccCCcCHHHHHhhcC
Q 016909 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 228 (380)
Q Consensus 149 ~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~G 228 (380)
.-+|-|.|.+. +.-.++++..|=|.++ ..-++..|..-++|||+|.-.....-.. ...+-..+....++.+-
T Consensus 61 ~~~Adgyar~t---g~~gv~~~t~GPG~~n---~~~gla~A~~~~~Pvl~i~G~~~~~~~~--~~~~q~~d~~~~~~~it 132 (566)
T PRK07282 61 LHEAEGYAKST---GKLGVAVVTSGPGATN---AITGIADAMSDSVPLLVFTGQVARAGIG--KDAFQEADIVGITMPIT 132 (566)
T ss_pred HHHHHHHHHHh---CCCeEEEECCCccHHH---HHHHHHHHhhcCCCEEEEecccccccCC--CCCccccChhchhcCCC
Confidence 44566666542 4445677777888886 3345666777899999998653321111 11111124455666665
Q ss_pred eeEEEEeCCCHHHHHHHHHHHHHHhhccC-CcEEEEEEe
Q 016909 229 VRSIRVDGNDALAIYSAVHAAREMAIGEG-RPILIEALT 266 (380)
Q Consensus 229 ~~~~~VdG~D~~av~~a~~~A~~~ar~~~-gP~lIe~~t 266 (380)
-...+|+ +++++..++.+|+..++.++ ||+.|++-.
T Consensus 133 k~s~~v~--~~~~~~~~l~~A~~~A~~~~~GPV~l~iP~ 169 (566)
T PRK07282 133 KYNYQIR--ETADIPRIITEAVHIATTGRPGPVVIDLPK 169 (566)
T ss_pred ceeEEcC--CHHHHHHHHHHHHHHHhcCCCCeEEEeCCh
Confidence 5666776 88899999999998888774 999998755
No 202
>PRK08367 porA pyruvate ferredoxin oxidoreductase subunit alpha; Reviewed
Probab=92.07 E-value=1.1 Score=45.56 Aligned_cols=113 Identities=19% Similarity=0.204 Sum_probs=74.2
Q ss_pred ccHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcceeeecccccCCcCHHHHHhhc
Q 016909 148 QLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAY 227 (380)
Q Consensus 148 ~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~ 227 (380)
.+.+++|+++| +.++++.+-=.++. ..+|.|.+|+-.++|+|+++-|-..+. +..-.....|+ .-.+-.
T Consensus 62 A~~~~~GAs~a------GaRa~TaTS~~Gl~--lm~E~l~~aag~~lP~V~vv~~R~~~~--p~~i~~d~~D~-~~~rd~ 130 (394)
T PRK08367 62 AISACVGASAA------GVRTFTATASQGLA--LMHEVLFIAAGMRLPIVMAIGNRALSA--PINIWNDWQDT-ISQRDT 130 (394)
T ss_pred HHHHHHHHHhh------CCCeEeeeccchHH--HHhhHHHHHHHccCCEEEEECCCCCCC--CCCcCcchHHH-Hhcccc
Confidence 37778888887 33455554333333 468999999999999999886554432 22211111121 123446
Q ss_pred CeeEEEEeCCCHHHHHHHHHHHHHHhhccC--CcEEEEEEeecCCCCCC
Q 016909 228 GVRSIRVDGNDALAIYSAVHAAREMAIGEG--RPILIEALTYRVGHHTT 274 (380)
Q Consensus 228 G~~~~~VdG~D~~av~~a~~~A~~~ar~~~--gP~lIe~~t~R~~gHs~ 274 (380)
||-.+.. .|+.+.++-...|.+.+.+.+ -|+++-..+||.. |+.
T Consensus 131 g~~~~~a--~~~QEa~D~~~~Af~lAE~~~~~~Pviv~~Dgf~~s-H~~ 176 (394)
T PRK08367 131 GWMQFYA--ENNQEALDLILIAFKVAEDERVLLPAMVGFDAFILT-HTV 176 (394)
T ss_pred CeEEEeC--CCHHHHHHHHHHHHHHHHHhCcCCCEEEEechhhhc-Ccc
Confidence 7666554 699999999999998877433 6999999998864 543
No 203
>PRK05858 hypothetical protein; Provisional
Probab=92.01 E-value=1.3 Score=46.66 Aligned_cols=108 Identities=17% Similarity=-0.000 Sum_probs=69.7
Q ss_pred cHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcceeeecccccCCcCHHHHHhhcC
Q 016909 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 228 (380)
Q Consensus 149 ~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~G 228 (380)
.-+|-|.|.+ .+.-.++++..|=|.++ ..-++..|..-+.|||+|.-.-..........+ ..|....++.+-
T Consensus 55 ~~~AdGyar~---tg~~gv~~~t~GpG~~n---~~~~i~~A~~~~~Pvl~i~g~~~~~~~~~~~~q--~~d~~~l~~~~t 126 (542)
T PRK05858 55 AFAAEAWAKL---TRVPGVAVLTAGPGVTN---GMSAMAAAQFNQSPLVVLGGRAPALRWGMGSLQ--EIDHVPFVAPVT 126 (542)
T ss_pred HHHHHHHHHh---cCCCeEEEEcCCchHHH---HHHHHHHHHhcCCCEEEEeCCCCcccCCCCCCc--ccchhhhhhhhh
Confidence 3456666655 23344556666777775 335577788889999998854332211111111 124556677776
Q ss_pred eeEEEEeCCCHHHHHHHHHHHHHHhhcc-CCcEEEEEEe
Q 016909 229 VRSIRVDGNDALAIYSAVHAAREMAIGE-GRPILIEALT 266 (380)
Q Consensus 229 ~~~~~VdG~D~~av~~a~~~A~~~ar~~-~gP~lIe~~t 266 (380)
-...+|+ +++.+.+.+.+|+..+..+ .||+.|++-.
T Consensus 127 k~~~~v~--~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~ 163 (542)
T PRK05858 127 KFAATAQ--SAENAGRLVDQALQAAVTPHRGPVFVDFPM 163 (542)
T ss_pred ceEEEeC--CHHHHHHHHHHHHHHHcCCCCCeEEEEcCh
Confidence 6677776 7888999999998877665 5899998854
No 204
>PRK08327 acetolactate synthase catalytic subunit; Validated
Probab=91.92 E-value=0.86 Score=48.33 Aligned_cols=109 Identities=15% Similarity=0.133 Sum_probs=70.9
Q ss_pred HHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcceeeec----c--cccCC-cCHHH
Q 016909 150 PHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPI----S--DQFRS-DGAVV 222 (380)
Q Consensus 150 p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~i~~~~----~--~~~~~-~~~~~ 222 (380)
-+|-|.|.. .++-.++++..|=|.++ ..-++..|..-+.|||+|+-.-........ . ..+.. .|...
T Consensus 64 ~~Adgyar~---tgk~gv~~~t~GPG~~N---~~~gla~A~~d~~Pvl~I~G~~~~~~~~~~~~~~~~~~~~qe~~d~~~ 137 (569)
T PRK08327 64 SMAHGYALV---TGKPQAVMVHVDVGTAN---ALGGVHNAARSRIPVLVFAGRSPYTEEGELGSRNTRIHWTQEMRDQGG 137 (569)
T ss_pred HHHHHHHHh---hCCCeEEEEecCHHHHH---HHHHHHHHhhcCCCEEEEeccCCccccccccccccCcccchhhhhHHH
Confidence 345566554 23445666677888886 345677788889999999875432221100 0 00111 25556
Q ss_pred HHhhcCeeEEEEeCCCHHHHHHHHHHHHHHhhcc-CCcEEEEEEe
Q 016909 223 KGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGE-GRPILIEALT 266 (380)
Q Consensus 223 ~a~a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~-~gP~lIe~~t 266 (380)
.++.+--...+|+ +++++..++.+|+..++.+ .||+.|++-.
T Consensus 138 ~~~~vtk~~~~v~--~~~~~~~~l~~A~~~a~~~~~GPV~i~iP~ 180 (569)
T PRK08327 138 LVREYVKWDYEIR--RGDQIGEVVARAIQIAMSEPKGPVYLTLPR 180 (569)
T ss_pred HHhhhhhhhcccC--CHHHHHHHHHHHHHHHhcCCCCCEEEECcH
Confidence 6666655566676 8999999999999888875 6999998863
No 205
>TIGR02418 acolac_catab acetolactate synthase, catabolic. Acetolactate synthase (EC 2.2.1.6) combines two molecules of pyruvate to yield 2-acetolactate with the release of CO2. This reaction may be involved in either valine biosynthesis (biosynthetic) or conversion of pyruvate to acetoin and possibly to 2,3-butanediol (catabolic). The biosynthetic type, described by TIGR00118, is also capable of forming acetohydroxybutyrate from pyruvate and 2-oxobutyrate for isoleucine biosynthesis. The family described here, part of the same larger family of thiamine pyrophosphate-dependent enzymes (pfam00205, pfam02776) is the catabolic form, generally found associated with in species with acetolactate decarboxylase and usually found in the same operon. The model may not encompass all catabolic acetolactate synthases, but rather one particular clade in the larger TPP-dependent enzyme family.
Probab=91.89 E-value=1.4 Score=46.31 Aligned_cols=107 Identities=19% Similarity=0.055 Sum_probs=68.6
Q ss_pred HHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcceeeecccccCCcCHHHHHhhcCee
Q 016909 151 HAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVR 230 (380)
Q Consensus 151 ~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~G~~ 230 (380)
+|-|.|.. .+.-.++++..|=|.++ ..-++-.|...+.|||+|+-.-...... ...+...+....++.+--.
T Consensus 51 ~Adgyar~---tg~~gv~~~t~GpG~~n---~l~gl~~A~~~~~Pvl~I~G~~~~~~~~--~~~~q~~d~~~~~~~~tk~ 122 (539)
T TIGR02418 51 MAQAVGRI---TGKPGVALVTSGPGCSN---LVTGLATANSEGDPVVAIGGQVKRADLL--KLTHQSMDNVALFRPITKY 122 (539)
T ss_pred HHHHHHHH---hCCceEEEECCCCCHhH---HHHHHHHHhhcCCCEEEEeCCCcccccc--cCcccccchhhhhhcceee
Confidence 45555543 34445677777888886 3345666788899999998643322111 1111123445666665444
Q ss_pred EEEEeCCCHHHHHHHHHHHHHHhhcc-CCcEEEEEEee
Q 016909 231 SIRVDGNDALAIYSAVHAAREMAIGE-GRPILIEALTY 267 (380)
Q Consensus 231 ~~~VdG~D~~av~~a~~~A~~~ar~~-~gP~lIe~~t~ 267 (380)
..+++ +++++...+.+|+..++.+ .||+.|++-..
T Consensus 123 ~~~i~--~~~~~~~~~~~A~~~a~~~~~GPV~l~iP~d 158 (539)
T TIGR02418 123 SAEVQ--DPDALSEVVANAFRAAESGKPGAAFVSLPQD 158 (539)
T ss_pred eeecC--CHHHHHHHHHHHHHHHhcCCCCCEEEEcChh
Confidence 55665 8999999999998887776 48999987643
No 206
>PRK08527 acetolactate synthase 3 catalytic subunit; Validated
Probab=91.81 E-value=1.4 Score=46.62 Aligned_cols=108 Identities=20% Similarity=0.145 Sum_probs=68.9
Q ss_pred cHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcceeeecccccCCcCHHHHHhhcC
Q 016909 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 228 (380)
Q Consensus 149 ~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~G 228 (380)
.-+|-|.|.. .+.-.++++..|=|.++ ..-++.-|...+.|||+|.-.-..... ........|....++.+-
T Consensus 54 ~~~Adgyar~---tg~~gv~~~t~GpG~~n---~~~gla~A~~~~~Pvl~i~G~~~~~~~--~~~~~q~~d~~~~~~~~t 125 (563)
T PRK08527 54 VHAADGYARA---SGKVGVAIVTSGPGFTN---AVTGLATAYMDSIPLVLISGQVPNSLI--GTDAFQEIDAVGISRPCV 125 (563)
T ss_pred HHHHHHHHhh---hCCCEEEEECCCCcHHH---HHHHHHHHhhcCCCEEEEecCCCcccc--CCCCCcccchhhhhhccc
Confidence 3445555544 34455667777888886 234566677889999999743221110 011111124445666665
Q ss_pred eeEEEEeCCCHHHHHHHHHHHHHHhhccC-CcEEEEEEe
Q 016909 229 VRSIRVDGNDALAIYSAVHAAREMAIGEG-RPILIEALT 266 (380)
Q Consensus 229 ~~~~~VdG~D~~av~~a~~~A~~~ar~~~-gP~lIe~~t 266 (380)
-...+|+ +++++..++++|+..++.+. ||+.|++-.
T Consensus 126 k~s~~v~--~~~~i~~~l~~A~~~a~s~~~GPV~l~iP~ 162 (563)
T PRK08527 126 KHNYLVK--SIEELPRILKEAFYIARSGRPGPVHIDIPK 162 (563)
T ss_pred ceEEEcC--CHHHHHHHHHHHHHHHhcCCCCcEEEEcCH
Confidence 5556665 99999999999998888765 899998764
No 207
>TIGR03710 OAFO_sf 2-oxoacid:acceptor oxidoreductase, alpha subunit. The genes for this enzyme in Prevotella intermedia 17, Persephonella marina EX-H1 and Picrophilus torridus DSM 9790 are in close proximity to a variety of TCA cycle genes. Persephonella marina and P. torridus are believed to encode complete TCA cycles, and none of these contains the lipoate-based 2-oxoglutarate dehydrogenase (E1/E2/E3) system. That system is presumed to be replaced by this one. In fact, the lipoate system is absent in most organisms possessing a member of this family, providing additional circumstantial evidence that many of these enzymes are capable of acting as 2-oxoglutarate dehydrogenases and supporting flux through TCA cycles in either the forward or reverse directions.
Probab=91.78 E-value=0.74 Score=48.89 Aligned_cols=109 Identities=19% Similarity=0.219 Sum_probs=71.4
Q ss_pred cHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcceeeecccccCCcCH-HHHHhh-
Q 016909 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGA-VVKGRA- 226 (380)
Q Consensus 149 ~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~i~~~~~~~~~~~~~-~~~a~a- 226 (380)
+.+|+|+++| +.++++.+-=.+++ ...|.|.+|+-..+|+|+++-+..- .++....+....|+ ..+.-+
T Consensus 250 ~~~a~GAs~a------G~Ra~taTSg~Gl~--lm~E~l~~a~~~~~P~Vi~~~~R~g-pstg~~t~~eq~D~~~~~~~~h 320 (562)
T TIGR03710 250 INMAIGASYA------GARAMTATSGPGFA--LMTEALGLAGMTETPLVIVDVQRGG-PSTGLPTKTEQSDLLFALYGGH 320 (562)
T ss_pred HHHHHhHHhc------CCceeecCCCCChh--HhHHHHhHHHhccCCEEEEEcccCC-CCCCCCCCccHHHHHHHhcCCC
Confidence 6778888887 33455555444454 5789999999999998887766542 22211111111122 122222
Q ss_pred --cCeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeec
Q 016909 227 --YGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 268 (380)
Q Consensus 227 --~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R 268 (380)
++|.++ ...|+.+++....+|++.+.+..-|+++-...+.
T Consensus 321 gd~~~ivl--~p~~~qEa~d~~~~Af~lAe~~~~PViv~~D~~l 362 (562)
T TIGR03710 321 GEFPRIVL--APGSPEECFYLAIEAFNLAEKYQTPVIVLSDQYL 362 (562)
T ss_pred CCcCceEE--cCCCHHHHHHHHHHHHHHHHHhcCCEEEEechHH
Confidence 235444 4559999999999999988888999999988874
No 208
>PRK08617 acetolactate synthase; Reviewed
Probab=91.57 E-value=1.5 Score=46.20 Aligned_cols=107 Identities=16% Similarity=0.048 Sum_probs=69.1
Q ss_pred HHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcceeeecccccCCcCHHHHHhhcCe
Q 016909 150 PHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGV 229 (380)
Q Consensus 150 p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~G~ 229 (380)
-+|.|.|.+ .+.-.++++..|=|.++ ..-++..|..-+.|||+|.-......... ......|....++.+--
T Consensus 56 ~~A~gyar~---tg~~gv~~vt~GpG~~N---~l~gl~~A~~~~~PvlvisG~~~~~~~~~--~~~q~~d~~~l~~~~tk 127 (552)
T PRK08617 56 FMAAAIGRL---TGKPGVVLVTSGPGVSN---LATGLVTATAEGDPVVAIGGQVKRADRLK--RTHQSMDNVALFRPITK 127 (552)
T ss_pred HHHHhHhhh---cCCCEEEEECCCCcHhH---hHHHHHHHhhcCCCEEEEecCCcccccCC--CCccccchhhhhhhhcc
Confidence 345555543 33445666666888886 33456677888899999985332211111 11112245566777766
Q ss_pred eEEEEeCCCHHHHHHHHHHHHHHhhcc-CCcEEEEEEe
Q 016909 230 RSIRVDGNDALAIYSAVHAAREMAIGE-GRPILIEALT 266 (380)
Q Consensus 230 ~~~~VdG~D~~av~~a~~~A~~~ar~~-~gP~lIe~~t 266 (380)
...+|+ +++++..++.+|+..+..+ .||+.|++-.
T Consensus 128 ~~~~v~--~~~~~~~~i~~A~~~a~~~~~GPV~l~iP~ 163 (552)
T PRK08617 128 YSAEVQ--DPDNLSEVLANAFRAAESGRPGAAFVSLPQ 163 (552)
T ss_pred eEEEeC--CHHHHHHHHHHHHHHHccCCCCcEEEeChh
Confidence 677776 8999999999999888776 4899998764
No 209
>PRK09622 porA pyruvate flavodoxin oxidoreductase subunit alpha; Reviewed
Probab=91.51 E-value=1.3 Score=45.07 Aligned_cols=111 Identities=19% Similarity=0.196 Sum_probs=73.8
Q ss_pred cHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcceeeecccccCCcCHHHHHhhcC
Q 016909 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 228 (380)
Q Consensus 149 ~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~G 228 (380)
+.+++|++++ +.++++.+-=.+++ ..+|.|.+|+-.++|+|+++-+-+... +..-.....|+.. ++.-|
T Consensus 69 ~~~~~GAs~a------GaRa~TaTS~~Gl~--lm~E~l~~aa~~~~P~V~~~~~R~~~~--~~~i~~d~~D~~~-~r~~g 137 (407)
T PRK09622 69 MSACVGAAAA------GGRVATATSSQGLA--LMVEVLYQASGMRLPIVLNLVNRALAA--PLNVNGDHSDMYL-SRDSG 137 (407)
T ss_pred HHHHHHHHhh------CcCEEeecCcchHH--HHhhHHHHHHHhhCCEEEEEeccccCC--CcCCCchHHHHHH-HhcCC
Confidence 6778888887 33455554433343 478999999999999888888777532 1111111122222 23446
Q ss_pred eeEEEEeCCCHHHHHHHHHHHHHHhhcc--CCcEEEEEEeecCCCCC
Q 016909 229 VRSIRVDGNDALAIYSAVHAAREMAIGE--GRPILIEALTYRVGHHT 273 (380)
Q Consensus 229 ~~~~~VdG~D~~av~~a~~~A~~~ar~~--~gP~lIe~~t~R~~gHs 273 (380)
|.++ ...++.++++....|.+.+.+. .-|+++-..+++. +|.
T Consensus 138 ~ivl--~p~s~QEa~d~~~~Af~lAE~~~~~~Pviv~~Dg~~~-sh~ 181 (407)
T PRK09622 138 WISL--CTCNPQEAYDFTLMAFKIAEDQKVRLPVIVNQDGFLC-SHT 181 (407)
T ss_pred eEEE--eCCCHHHHHHHHHHHHHHHHHhccCCCEEEEechhhh-hCc
Confidence 6555 4559999999999999887766 7899998887653 453
No 210
>CHL00099 ilvB acetohydroxyacid synthase large subunit
Probab=91.24 E-value=1.6 Score=46.41 Aligned_cols=107 Identities=22% Similarity=0.192 Sum_probs=68.2
Q ss_pred HHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcceeeecccccCCcCHHHHHhhcCe
Q 016909 150 PHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGV 229 (380)
Q Consensus 150 p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~G~ 229 (380)
-+|.|.|.. .+.-.++++..|=|.++ ..-++.-|..-+.|||+|+-.-...... ...+..-|....++.+--
T Consensus 65 ~~Adgyar~---tg~~gv~~~t~GPG~~N---~l~gl~~A~~~~~Pvl~I~G~~~~~~~~--~~~~q~~d~~~~~~~~tk 136 (585)
T CHL00099 65 HAADGYARS---TGKVGVCFATSGPGATN---LVTGIATAQMDSVPLLVITGQVGRAFIG--TDAFQEVDIFGITLPIVK 136 (585)
T ss_pred HHHHHHHHh---cCCcEEEEECCCCcHHH---HHHHHHHHhhcCCCEEEEecCCCccccC--CCCccccchhhhhcCcee
Confidence 345555544 24445666777888886 2345666778889999998542211100 011111244556666655
Q ss_pred eEEEEeCCCHHHHHHHHHHHHHHhhcc-CCcEEEEEEe
Q 016909 230 RSIRVDGNDALAIYSAVHAAREMAIGE-GRPILIEALT 266 (380)
Q Consensus 230 ~~~~VdG~D~~av~~a~~~A~~~ar~~-~gP~lIe~~t 266 (380)
...+|. +++++.+.+++|+..++.+ .||+.|++-.
T Consensus 137 ~~~~v~--~~~~i~~~l~~A~~~A~~~~~GPV~l~iP~ 172 (585)
T CHL00099 137 HSYVVR--DARDISRIVAEAFYIAKHGRPGPVLIDIPK 172 (585)
T ss_pred EEEEeC--CHHHHHHHHHHHHHHHccCCCCeEEEecCh
Confidence 666776 8999999999999887765 4899998754
No 211
>KOG4166 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=91.16 E-value=1.2 Score=45.28 Aligned_cols=149 Identities=17% Similarity=0.210 Sum_probs=82.8
Q ss_pred CCCHHHHHHHhhcCCC-----CCCCCCCCccccCC---CCCCcccccccccCccHHHHHHHHHhhhcCCCceeEEEeCcc
Q 016909 104 GFSMQEFANQCFGNKA-----DYGKGRQMPIHYGS---NKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDG 175 (380)
Q Consensus 104 G~~~~~~l~e~~g~~~-----~~~~G~~~~~H~~~---~~~~~~~~~g~lG~~~p~AvG~A~A~k~~~~~~~vv~~~GDG 175 (380)
|..-.++|.+++.+.. |+-.|.-++.|-.. .+.++.-.----|+ .-+|-|.|.+. ++..+|++..|-|
T Consensus 90 g~tGg~If~emm~rqnV~tVFgYPGGAilpv~dAi~rS~~f~fvLPrHEQga-ghaAegYaR~s---gKPGvvlvTSGPG 165 (675)
T KOG4166|consen 90 GRTGGDIFVEMMERQNVETVFGYPGGAILPVHDAITRSSSFRFVLPRHEQGA-GHAAEGYARSS---GKPGVVLVTSGPG 165 (675)
T ss_pred CCchhHHHHHHHHhcCCceEeecCCcceeehHhhhhcCcccccccccccccc-chhhhhhhhhc---CCCcEEEEecCCC
Confidence 3334456666655433 34456667776332 22222211111122 23456776664 5678999999999
Q ss_pred ccCcchHHHHHHHHHHcCCCEEEEEEcCCcceeeecccccCCcCHHHHHhhc-CeeEEEEeCCCHHHHHHHHHHHHHHhh
Q 016909 176 GTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAY-GVRSIRVDGNDALAIYSAVHAAREMAI 254 (380)
Q Consensus 176 ~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~-G~~~~~VdG~D~~av~~a~~~A~~~ar 254 (380)
+++ +.--|.-|-.-+.|+|.+- .|..-+.-..+.+...++....+++ -|.+. | .|++++..-+.+|++.+-
T Consensus 166 ATN---vvtp~ADAlaDg~PlVvft--GQVptsaIGtDAFQEadiVgisRScTKwNvm-V--kdVedlPrrI~EAFeiAT 237 (675)
T KOG4166|consen 166 ATN---VVTPLADALADGVPLVVFT--GQVPTSAIGTDAFQEADIVGISRSCTKWNVM-V--KDVEDLPRRIEEAFEIAT 237 (675)
T ss_pred ccc---ccchhhHHhhcCCcEEEEe--cccchhhcccchhccCCeeeeeeccceehee-e--ecHHHhhHHHHHHhhhhc
Confidence 997 3334555666788977653 3322111112222223344444444 23333 3 389999999999998776
Q ss_pred cc-CCcEEEEE
Q 016909 255 GE-GRPILIEA 264 (380)
Q Consensus 255 ~~-~gP~lIe~ 264 (380)
.+ .||+|+++
T Consensus 238 SGRPGPVLVDl 248 (675)
T KOG4166|consen 238 SGRPGPVLVDL 248 (675)
T ss_pred cCCCCCeEeeC
Confidence 65 58999976
No 212
>PLN02683 pyruvate dehydrogenase E1 component subunit beta
Probab=90.75 E-value=2.2 Score=42.72 Aligned_cols=101 Identities=19% Similarity=0.121 Sum_probs=59.4
Q ss_pred CccHHHHHHHHHhhhcCCCceeEEEe-CccccCcchHHHHHHHHHHcC--------CCEEEEEEcCCcceeeecccccCC
Q 016909 147 TQLPHAVGAAYALKMDRKDACAVTYF-GDGGTSEGDFHAALNFSAVTE--------APVIFICRNNGWAISTPISDQFRS 217 (380)
Q Consensus 147 ~~~p~AvG~A~A~k~~~~~~~vv~~~-GDG~~~eG~~~Eal~~A~~~~--------Lpvi~vv~NN~~~i~~~~~~~~~~ 217 (380)
+.++.|+|+|++ | .++++++. .|=. +=.+-+-.+-++.++ +||+|+..+......++++.+.
T Consensus 85 ~~vg~AaGlA~~----G-~~P~v~~~~~~f~--~ra~dQi~~dva~~~~~~~g~~~~pV~i~~~~G~~~g~G~tH~~~-- 155 (356)
T PLN02683 85 GFTGIGVGAAYA----G-LKPVVEFMTFNFS--MQAIDHIINSAAKTNYMSAGQISVPIVFRGPNGAAAGVGAQHSQC-- 155 (356)
T ss_pred HHHHHHHHHHHC----C-CEEEEEEehhhHH--HHHHHHHHHHHHHhccccCCCccCCEEEEEeCCCCCCCCCccccC--
Confidence 346667777764 2 23444443 2222 112333456667665 9999998773322223333221
Q ss_pred cCHHHHHhhc-CeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEE
Q 016909 218 DGAVVKGRAY-GVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEA 264 (380)
Q Consensus 218 ~~~~~~a~a~-G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~ 264 (380)
. ....+++ |+.++.-- |..++..+++.|++ .++|+.|-.
T Consensus 156 -~-~a~lr~iPnl~V~~Pa--d~~e~~~~l~~a~~----~~gPv~ir~ 195 (356)
T PLN02683 156 -F-AAWYSSVPGLKVLAPY--SSEDARGLLKAAIR----DPDPVVFLE 195 (356)
T ss_pred -H-HHHHhcCCCCEEEEeC--CHHHHHHHHHHHHh----CCCcEEEEE
Confidence 2 3555554 77777655 89999999998885 368998853
No 213
>PRK09124 pyruvate dehydrogenase; Provisional
Probab=90.60 E-value=2.1 Score=45.45 Aligned_cols=106 Identities=14% Similarity=-0.024 Sum_probs=64.0
Q ss_pred HHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcceeeecccccCCcCHHHHHhhcCe
Q 016909 150 PHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGV 229 (380)
Q Consensus 150 p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~G~ 229 (380)
-+|.|.|.+. +.-.++++..|=|.++ ..-++--|..-++|||+|.-+-....... ..+...+..+.++.+-.
T Consensus 55 ~~Adgyar~t---g~~gv~~~t~GpG~~n---~~~gi~~A~~~~~Pvl~i~G~~~~~~~~~--~~~Q~~d~~~l~~~itk 126 (574)
T PRK09124 55 FAAGAEAQLT---GELAVCAGSCGPGNLH---LINGLFDCHRNHVPVLAIAAHIPSSEIGS--GYFQETHPQELFRECSH 126 (574)
T ss_pred HHHHHHHHhh---CCcEEEEECCCCCHHH---HHHHHHHHhhcCCCEEEEecCCccccCCC--CCccccChhhhccccee
Confidence 3566665542 3223334445777775 22346667788899999986533221111 11111244456665544
Q ss_pred eEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEE
Q 016909 230 RSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEAL 265 (380)
Q Consensus 230 ~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~ 265 (380)
...+|+ +++.+...+.+|+..+....||+.|++-
T Consensus 127 ~~~~v~--~~~~~~~~i~~A~~~A~~~~gPV~l~iP 160 (574)
T PRK09124 127 YCELVS--NPEQLPRVLAIAMRKAILNRGVAVVVLP 160 (574)
T ss_pred eeEEeC--CHHHHHHHHHHHHHHHhcCCCCEEEEeC
Confidence 555666 8888888888888887777899999874
No 214
>PLN02573 pyruvate decarboxylase
Probab=90.39 E-value=2.1 Score=45.64 Aligned_cols=109 Identities=17% Similarity=0.094 Sum_probs=68.8
Q ss_pred HHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcceeee---cccccCCc---CHHHH
Q 016909 150 PHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTP---ISDQFRSD---GAVVK 223 (380)
Q Consensus 150 p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~i~~~---~~~~~~~~---~~~~~ 223 (380)
-+|-|.|.+. + -.++++..|=|.++ ..-++..|...+.|||+|.-.-....... .+...... ...+.
T Consensus 68 ~mAdgyaR~t---g-~gv~~~t~GpG~~n---~~~gla~A~~d~~Pvl~I~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (578)
T PLN02573 68 YAADGYARAR---G-VGACVVTFTVGGLS---VLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFSQELRC 140 (578)
T ss_pred HHHHHHHHHh---C-CCeEEEecCccHHH---HHHHHHHHHHhCCCEEEEECCCChhhhhcCceeeeecCCCChHHHHHH
Confidence 3555666543 4 56777888888886 23456667788999999986543321110 00000001 11245
Q ss_pred HhhcCeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEee
Q 016909 224 GRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTY 267 (380)
Q Consensus 224 a~a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~ 267 (380)
++.+--...+|. +++.+.+.+.+|+..++.+.||+.|++-..
T Consensus 141 ~~~itk~s~~v~--~~~~~~~~l~~A~~~A~~~~gPV~l~iP~D 182 (578)
T PLN02573 141 FQTVTCYQAVIN--NLEDAHELIDTAISTALKESKPVYISVSCN 182 (578)
T ss_pred hhceEEEEEEeC--CHHHHHHHHHHHHHHHHhcCCCEEEEeehh
Confidence 555555566676 888888889999888888889999988543
No 215
>PRK12571 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=90.36 E-value=1.6 Score=47.23 Aligned_cols=102 Identities=14% Similarity=0.084 Sum_probs=62.2
Q ss_pred cHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHH-HHHHHcCCCEEEEEEcCCcc-eeeecccccCCcCHHHHHhh
Q 016909 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAAL-NFSAVTEAPVIFICRNNGWA-ISTPISDQFRSDGAVVKGRA 226 (380)
Q Consensus 149 ~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal-~~A~~~~Lpvi~vv~NN~~~-i~~~~~~~~~~~~~~~~a~a 226 (380)
+++|.|+|++ .-+++++++ ..|.+ ..++.+ +.++..++||+|+++..++. .+++++.. ..+++-...-
T Consensus 374 vg~AaGlA~~-----G~~P~v~~f--~~Fl~-ra~dQI~~~~a~~~lpv~~v~~~~G~~g~dG~THq~--~~dia~lr~i 443 (641)
T PRK12571 374 VTFAAGLAAA-----GLKPFCAVY--STFLQ-RGYDQLLHDVALQNLPVRFVLDRAGLVGADGATHAG--AFDLAFLTNL 443 (641)
T ss_pred HHHHHHHHHC-----CCEEEEEeh--HHHHH-HHHHHHHHHHhhcCCCeEEEEECCCcCCCCCccccc--cHHHHHHhcC
Confidence 4566677652 224444444 34544 344555 66889999999999777653 22333332 2333333322
Q ss_pred cCeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEE
Q 016909 227 YGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEAL 265 (380)
Q Consensus 227 ~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~ 265 (380)
-|+.++.-- |+.+++.+++.|++. .++|++|-..
T Consensus 444 Pnl~V~~Ps--d~~e~~~~l~~a~~~---~~~P~~ir~~ 477 (641)
T PRK12571 444 PNMTVMAPR--DEAELRHMLRTAAAH---DDGPIAVRFP 477 (641)
T ss_pred CCCEEEeeC--CHHHHHHHHHHHHhC---CCCcEEEEEe
Confidence 366666544 899999999998863 4799988543
No 216
>TIGR00232 tktlase_bact transketolase, bacterial and yeast. This model is designed to capture orthologs of bacterial transketolases. The group includes two from the yeast Saccharomyces cerevisiae but excludes dihydroxyactetone synthases (formaldehyde transketolases) from various yeasts and the even more distant mammalian transketolases. Among the family of thiamine diphosphate-dependent enzymes that includes transketolases, dihydroxyacetone synthases, pyruvate dehydrogenase E1-beta subunits, and deoxyxylulose-5-phosphate synthases, mammalian and bacterial transketolases seem not to be orthologous.
Probab=90.30 E-value=1.7 Score=47.06 Aligned_cols=101 Identities=17% Similarity=0.076 Sum_probs=63.2
Q ss_pred cHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcce--eeecccccCCcCHHHHHhh
Q 016909 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAI--STPISDQFRSDGAVVKGRA 226 (380)
Q Consensus 149 ~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~i--~~~~~~~~~~~~~~~~a~a 226 (380)
+++|.|+|+. +.-.++++.+ ..|.+ ..++++.+++..++||++|....+++. +++++ .+.++++- .++
T Consensus 409 v~~AaGlA~~----gG~~p~~~tf--~~F~~-r~~~~ir~~a~~~lpV~~v~th~g~~~G~dG~TH--q~iedia~-lr~ 478 (653)
T TIGR00232 409 GAIMNGIALH----GGFKPYGGTF--LMFVD-YARPAIRLAALMKLPVIYVYTHDSIGVGEDGPTH--QPIEQLAS-LRA 478 (653)
T ss_pred HHHHHHHHHc----CCCeEEEEEh--HHHHH-HHHHHHHHHHhcCCCEEEEEeCCccCCCCCCccc--CCHHHHHH-Hhc
Confidence 3555666652 2122333333 35544 567888999999999999997766653 34443 23334333 333
Q ss_pred c-CeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEE
Q 016909 227 Y-GVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEA 264 (380)
Q Consensus 227 ~-G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~ 264 (380)
. |+.++.-- |..++..+++.+++. .++|+.|-.
T Consensus 479 iPn~~v~~Pa--D~~E~~~~~~~a~~~---~~gP~~irl 512 (653)
T TIGR00232 479 IPNLSVWRPC--DGNETAAAWKYALES---QDGPTALIL 512 (653)
T ss_pred CCCCEEEeeC--CHHHHHHHHHHHHhc---CCCcEEEEE
Confidence 3 66666654 899999999988842 478988843
No 217
>PRK06154 hypothetical protein; Provisional
Probab=90.23 E-value=2.5 Score=44.89 Aligned_cols=93 Identities=11% Similarity=0.043 Sum_probs=61.8
Q ss_pred ceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcceeeecccccCCcCHHHHHhhcCeeEEEEeCCCHHHHHHH
Q 016909 166 ACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSA 245 (380)
Q Consensus 166 ~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a 245 (380)
.++++..|=|.++ ..-++..|..-+.|||+|+-........ ....-+....++.+--...+|+ +++++.+.
T Consensus 83 gv~~~t~GPG~~N---~~~gla~A~~~~~Pvl~i~G~~~~~~~~----~~~~~d~~~~~~~vtk~~~~v~--~~~~~~~~ 153 (565)
T PRK06154 83 GVFAVQYGPGAEN---AFGGVAQAYGDSVPVLFLPTGYPRGSTD----VAPNFESLRNYRHITKWCEQVT--LPDEVPEL 153 (565)
T ss_pred EEEEECCCccHHH---HHHHHHHHhhcCCCEEEEeCCCCccccc----CCCCcchhhhHhhcceeEEECC--CHHHHHHH
Confidence 3444556888886 3355777788899999998543322110 0011233455666655566676 89999999
Q ss_pred HHHHHHHhhcc-CCcEEEEEEee
Q 016909 246 VHAAREMAIGE-GRPILIEALTY 267 (380)
Q Consensus 246 ~~~A~~~ar~~-~gP~lIe~~t~ 267 (380)
+.+|+..++.+ .||+.|++-..
T Consensus 154 i~~A~~~A~s~~~GPV~l~iP~D 176 (565)
T PRK06154 154 MRRAFTRLRNGRPGPVVLELPVD 176 (565)
T ss_pred HHHHHHHHhcCCCceEEEecchH
Confidence 99999888875 59999988654
No 218
>PRK06546 pyruvate dehydrogenase; Provisional
Probab=90.09 E-value=2.2 Score=45.33 Aligned_cols=107 Identities=18% Similarity=0.034 Sum_probs=65.3
Q ss_pred HHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcceeeecccccCCcCHHHHHhhcCe
Q 016909 150 PHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGV 229 (380)
Q Consensus 150 p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~G~ 229 (380)
-+|-|.|.+. +.-.++++..|=|.++ ..-++-.|...+.|||+|.-.-....... ..+...+....++.+--
T Consensus 55 ~mAdgyar~t---gk~~v~~v~~GpG~~N---~~~gl~~A~~~~~Pvl~I~G~~~~~~~~~--~~~Qe~d~~~l~~~~tk 126 (578)
T PRK06546 55 FAAAAEAQLT---GKLAVCAGSCGPGNLH---LINGLYDAHRSGAPVLAIASHIPSAQIGS--GFFQETHPDRLFVECSG 126 (578)
T ss_pred HHHHhHHHhh---CCceEEEECCCCcHHH---HHHHHHHHHhcCCCEEEEeCCCCccccCC--CCccccChhhhccccee
Confidence 3455665542 3334455556777776 22346667788999999985332111100 11111233455555544
Q ss_pred eEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEe
Q 016909 230 RSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALT 266 (380)
Q Consensus 230 ~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t 266 (380)
...+|. +++++...+.+|+..+....||+.|++-.
T Consensus 127 ~~~~v~--~~~~~~~~i~~A~~~A~~~~GPV~l~lP~ 161 (578)
T PRK06546 127 YCEMVS--SAEQAPRVLHSAIQHAVAGGGVSVVTLPG 161 (578)
T ss_pred eEeEeC--CHHHHHHHHHHHHHHHhcCCCCEEEEcCh
Confidence 455666 88889999999998888888999998754
No 219
>PRK05444 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=90.07 E-value=1.7 Score=46.23 Aligned_cols=101 Identities=15% Similarity=0.074 Sum_probs=61.9
Q ss_pred cHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHH-HHHHHHHcCCCEEEEEEcCCcce-eeecccccCCcCHHHHHhh
Q 016909 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHA-ALNFSAVTEAPVIFICRNNGWAI-STPISDQFRSDGAVVKGRA 226 (380)
Q Consensus 149 ~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~E-al~~A~~~~Lpvi~vv~NN~~~i-~~~~~~~~~~~~~~~~a~a 226 (380)
+++|.|+|+. | .++|+.+ =..|.. ..++ -.+.++..++||++++...++.. +++++. ...+++-...-
T Consensus 334 vg~A~GlA~~----G--~~p~~~~-f~~F~~-ra~dQi~~~~a~~~~pv~~v~~~~G~~g~dG~tH~--~~edia~lr~i 403 (580)
T PRK05444 334 VTFAAGLATE----G--LKPVVAI-YSTFLQ-RAYDQVIHDVALQNLPVTFAIDRAGLVGADGPTHQ--GAFDLSYLRCI 403 (580)
T ss_pred HHHHHHHHHC----C--CeeEEEe-eHHHHH-HHHHHHHHHhhhcCCCEEEEEeCCCcCCCCCcccc--ccHHHHHHhcC
Confidence 4567777763 2 3344433 345544 3344 45668889999999998766532 123322 22334333333
Q ss_pred cCeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEE
Q 016909 227 YGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEA 264 (380)
Q Consensus 227 ~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~ 264 (380)
-|+.++.-- |+.+...+++.|++. .++|++|-.
T Consensus 404 P~l~V~~Ps--d~~e~~~~l~~a~~~---~~~P~~ir~ 436 (580)
T PRK05444 404 PNMVIMAPS--DENELRQMLYTALAY---DDGPIAIRY 436 (580)
T ss_pred CCCEEEeeC--CHHHHHHHHHHHHhC---CCCcEEEEe
Confidence 377766654 899999999999863 368998744
No 220
>PRK11892 pyruvate dehydrogenase subunit beta; Provisional
Probab=90.03 E-value=2.2 Score=44.25 Aligned_cols=99 Identities=19% Similarity=0.158 Sum_probs=61.3
Q ss_pred ccHHHHHHHHHhhhcCCCceeEEEe-CccccCcchHHHHHHHHH--------HcCCCEEEEEEcCCcceeeecccccCCc
Q 016909 148 QLPHAVGAAYALKMDRKDACAVTYF-GDGGTSEGDFHAALNFSA--------VTEAPVIFICRNNGWAISTPISDQFRSD 218 (380)
Q Consensus 148 ~~p~AvG~A~A~k~~~~~~~vv~~~-GDG~~~eG~~~Eal~~A~--------~~~Lpvi~vv~NN~~~i~~~~~~~~~~~ 218 (380)
.+++|+|+|++ .-++++.++ .+-.. =.+-+-.|.++ ++++||+|+..|.+++..+. +.+..
T Consensus 201 ~vg~AaGlA~~-----G~rPiv~~~~~~f~~--ra~dQI~n~~ak~~~~sgg~~~~pVv~~g~~G~~~~~G~---hhs~~ 270 (464)
T PRK11892 201 FAGIGVGAAFA-----GLKPIVEFMTFNFAM--QAIDQIINSAAKTLYMSGGQMGCPIVFRGPNGAAARVAA---QHSQD 270 (464)
T ss_pred HHHHHHHHHhC-----CCEEEEEEehHHHHH--HHHHHHHHHHhHHhhhcCCccCCCEEEEecCCCCCCCCC---ccccC
Confidence 35667777774 223444443 22222 12344456677 88999999998877654333 22333
Q ss_pred CHHHHHhhc-CeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEE
Q 016909 219 GAVVKGRAY-GVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIE 263 (380)
Q Consensus 219 ~~~~~a~a~-G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe 263 (380)
+ ....+.+ |+.++.-- |+.+....++.|++ .++|++|-
T Consensus 271 d-~a~~~~iPgl~V~~P~--d~~d~~~ll~~ai~----~~~Pv~il 309 (464)
T PRK11892 271 Y-AAWYSHIPGLKVVAPY--SAADAKGLLKAAIR----DPNPVIFL 309 (464)
T ss_pred H-HHHHhhCCCCEEEEeC--CHHHHHHHHHHHhh----CCCcEEEE
Confidence 3 3445544 77777644 88899999999885 36899873
No 221
>PRK07092 benzoylformate decarboxylase; Reviewed
Probab=89.85 E-value=2.4 Score=44.56 Aligned_cols=108 Identities=17% Similarity=0.062 Sum_probs=67.5
Q ss_pred HHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcceeeecccccCCcCHHHHHhhcCe
Q 016909 150 PHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGV 229 (380)
Q Consensus 150 p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~G~ 229 (380)
-+|.|.|.+ .+...++++..|=|.++ ..-++-.|..-+.|||+|+-.-.+........+ ...+....++.+--
T Consensus 62 ~~Adgyar~---tg~~~v~~vt~gpG~~N---~~~gia~A~~~~~Pvl~i~g~~~~~~~~~~~~~-~~~d~~~l~~~~tk 134 (530)
T PRK07092 62 GMADGYAQA---TGNAAFVNLHSAAGVGN---AMGNLFTAFKNHTPLVITAGQQARSILPFEPFL-AAVQAAELPKPYVK 134 (530)
T ss_pred HHHHHHHHH---hCCceEEEeccCchHHH---HHHHHHHHhhcCCCEEEEecCCcccccCccchh-cccCHHHhhccccc
Confidence 356676655 34445566666888774 345566778889999988864333211100000 11244455655543
Q ss_pred eEEEEeCCCHHHHHHHHHHHHHHhhccC-CcEEEEEEe
Q 016909 230 RSIRVDGNDALAIYSAVHAAREMAIGEG-RPILIEALT 266 (380)
Q Consensus 230 ~~~~VdG~D~~av~~a~~~A~~~ar~~~-gP~lIe~~t 266 (380)
...+|. +++.+.+.+.+|+..++.++ ||+.|++-.
T Consensus 135 ~~~~v~--~~~~~~~~i~~A~~~A~~~~~GPv~l~iP~ 170 (530)
T PRK07092 135 WSIEPA--RAEDVPAAIARAYHIAMQPPRGPVFVSIPY 170 (530)
T ss_pred ceeecC--CHHHHHHHHHHHHHHHhcCCCCcEEEEccH
Confidence 444554 89999999999998887774 799998864
No 222
>PLN02234 1-deoxy-D-xylulose-5-phosphate synthase
Probab=89.84 E-value=1.8 Score=46.60 Aligned_cols=100 Identities=14% Similarity=0.169 Sum_probs=59.2
Q ss_pred cHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcc-eeeecccccCCcCHHHHHhhc
Q 016909 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWA-ISTPISDQFRSDGAVVKGRAY 227 (380)
Q Consensus 149 ~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~-i~~~~~~~~~~~~~~~~a~a~ 227 (380)
+++|.|+|+. | -+++++++ +.|.+-.+-+-.+.++..++||+|+++..++. .+++++.+ ..+++-...--
T Consensus 412 Vg~AaGLA~~----G-~rPvv~~f--s~Fl~RA~DQI~~dva~~~lpV~~v~~~aG~~g~dG~TH~~--~~Dia~lr~iP 482 (641)
T PLN02234 412 VTFAAGLACE----G-LKPFCTIY--SSFMQRAYDQVVHDVDLQKLPVRFAIDRAGLMGADGPTHCG--AFDVTFMACLP 482 (641)
T ss_pred HHHHHHHHHC----C-CeEEEEeh--HHHHHHHHHHHHHHHhhcCCCEEEEEeCCccCCCCCccccc--cHHHHHHhcCC
Confidence 4556666653 2 34444443 44544334444567789999999999887753 23333322 22222211222
Q ss_pred CeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEE
Q 016909 228 GVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILI 262 (380)
Q Consensus 228 G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lI 262 (380)
|+.++.-- |+.++..+++.|... .++|++|
T Consensus 483 nl~V~~Ps--d~~E~~~~l~~a~~~---~~~Pv~i 512 (641)
T PLN02234 483 NMIVMAPS--DEAELFNMVATAAAI---DDRPSCF 512 (641)
T ss_pred CCEEEeeC--CHHHHHHHHHHHHhC---CCCCEEE
Confidence 66666544 899999999887753 4689987
No 223
>PRK05899 transketolase; Reviewed
Probab=89.82 E-value=1.7 Score=46.66 Aligned_cols=103 Identities=18% Similarity=0.090 Sum_probs=64.7
Q ss_pred ccHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcce--eeecccccCCcCHHHHHh
Q 016909 148 QLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAI--STPISDQFRSDGAVVKGR 225 (380)
Q Consensus 148 ~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~i--~~~~~~~~~~~~~~~~a~ 225 (380)
.+++|.|+|+. |.-+++++.+ ..|. .-.++.+.+++..++|++++....+++. .++++ .+.++++-...
T Consensus 379 ~vg~A~GlA~~----G~~~pv~~t~--~~F~-~r~~~qir~~~~~~~pv~~v~~~~G~~~g~~G~tH--q~~edia~~r~ 449 (624)
T PRK05899 379 MAAIANGLALH----GGFIPFGGTF--LVFS-DYARNAIRLAALMKLPVIYVFTHDSIGVGEDGPTH--QPVEQLASLRA 449 (624)
T ss_pred HHHHHHHHHHc----CCCeEEEEEc--HHHH-HHHHHHHHHHHhcCCCEEEEEECCCcCcCCCCCCc--ccHHHHHHHHh
Confidence 35566666653 3223333322 3454 4677888888889999999998888654 44444 22333333222
Q ss_pred hcCeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEE
Q 016909 226 AYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEA 264 (380)
Q Consensus 226 a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~ 264 (380)
--|+.++.- .|+.++..+++.+++. .++|++|-.
T Consensus 450 iP~~~V~~P--~d~~e~~~~l~~a~~~---~~~P~~ir~ 483 (624)
T PRK05899 450 IPNLTVIRP--ADANETAAAWKYALER---KDGPSALVL 483 (624)
T ss_pred CCCcEEEeC--CCHHHHHHHHHHHHHc---CCCCEEEEE
Confidence 236666553 4899999999998862 379998865
No 224
>PTZ00089 transketolase; Provisional
Probab=89.29 E-value=2.5 Score=45.87 Aligned_cols=101 Identities=17% Similarity=0.118 Sum_probs=64.4
Q ss_pred cHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcce--eeecccccCCcCHHHHHhh
Q 016909 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAI--STPISDQFRSDGAVVKGRA 226 (380)
Q Consensus 149 ~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~i--~~~~~~~~~~~~~~~~a~a 226 (380)
+++|.|+|+. +.-.++++.+ ..|.+ -.++.+..++..+|||+||+...+++. +++++. +..+++- .++
T Consensus 416 v~~AaGlA~~----~G~~P~~~tf--~~Fl~-Ra~dqir~~al~~lpV~~v~thdg~~~g~DG~THq--~iedia~-lR~ 485 (661)
T PTZ00089 416 CAIMNGIAAH----GGFIPFGATF--LNFYG-YALGAVRLAALSHHPVIYVATHDSIGLGEDGPTHQ--PVETLAL-LRA 485 (661)
T ss_pred HHHHHHHHHc----CCCeEEEEeh--HHHHH-HHHHHHHHHHhcCCCeEEEEeCCceecCCCCCCcc--cHHHHHH-Hhc
Confidence 4566666651 2224555555 36655 677889999999999999997777654 333332 2233332 222
Q ss_pred c-CeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEE
Q 016909 227 Y-GVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEA 264 (380)
Q Consensus 227 ~-G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~ 264 (380)
+ |+.+++ --|..++..+++.|+.. .++|+.|-.
T Consensus 486 iPn~~V~~--PaD~~E~~~~l~~al~~---~~gP~~irl 519 (661)
T PTZ00089 486 TPNLLVIR--PADGTETSGAYALALAN---AKTPTILCL 519 (661)
T ss_pred CCCcEEEe--cCCHHHHHHHHHHHHHc---CCCCEEEEe
Confidence 2 555555 34889999999888853 468998854
No 225
>PLN02582 1-deoxy-D-xylulose-5-phosphate synthase
Probab=89.22 E-value=2.4 Score=46.03 Aligned_cols=103 Identities=13% Similarity=0.136 Sum_probs=61.9
Q ss_pred ccHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcce-eeecccccCCcCHHHHHhh
Q 016909 148 QLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAI-STPISDQFRSDGAVVKGRA 226 (380)
Q Consensus 148 ~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~i-~~~~~~~~~~~~~~~~a~a 226 (380)
.++.|.|+|+. | -+++++++ ..|.+=.+-+-.+-++..++||+|++...++.. +++++.. ..|++-...-
T Consensus 410 ~vg~AaGLA~~----G-~kPvv~~f--s~Fl~RA~DQI~~dval~~lpVv~v~~~aG~vg~dG~TH~~--~~Dia~lr~i 480 (677)
T PLN02582 410 AVTFAAGLACE----G-LKPFCAIY--SSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCG--AFDVTYMACL 480 (677)
T ss_pred HHHHHHHHHHC----C-CeEEEEec--HHHHHHHHHHHHHHHHhcCCCEEEEEECCCcccCCCCcccc--cHHHHHHhcC
Confidence 34556666653 2 34555554 355442333455777899999999999776633 2333322 2233222222
Q ss_pred cCeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEE
Q 016909 227 YGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEA 264 (380)
Q Consensus 227 ~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~ 264 (380)
-|+.++.-. |..++..+++.|+.. .++|++|..
T Consensus 481 Pnl~V~~Ps--d~~E~~~~l~~al~~---~~gPv~IR~ 513 (677)
T PLN02582 481 PNMVVMAPS--DEAELFHMVATAAAI---DDRPSCFRY 513 (677)
T ss_pred CCCEEEeeC--CHHHHHHHHHHHHhC---CCCCEEEEE
Confidence 366666544 889999999988863 458998853
No 226
>TIGR00173 menD 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase. 2-oxoglutarate decarboxylase/SHCHC synthase (menD) is a thiamine pyrophosphate enzyme involved in menaquinone biosynthesis.
Probab=89.17 E-value=1.4 Score=45.05 Aligned_cols=107 Identities=18% Similarity=0.094 Sum_probs=63.1
Q ss_pred HHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcceeeecccccCCcCHHHHHhhcCe
Q 016909 150 PHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGV 229 (380)
Q Consensus 150 p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~G~ 229 (380)
-+|-|.|.+ .+.-.++++..|=|.++ ..-++..|..-+.|||+|+-.-....... ......+..+.++.+--
T Consensus 52 ~mAdgyar~---tg~~gv~~~t~GpG~~N---~l~gl~~A~~~~~Pvl~i~g~~~~~~~~~--~~~q~~d~~~~~~~~tk 123 (432)
T TIGR00173 52 FFALGLAKA---SGRPVAVVCTSGTAVAN---LLPAVIEASYSGVPLIVLTADRPPELRGC--GANQTIDQPGLFGSYVR 123 (432)
T ss_pred HHHHHHHhc---cCCCEEEEECCcchHhh---hhHHHHHhcccCCcEEEEeCCCCHHHhCC--CCCcccchhhHHhhccc
Confidence 356666654 34456677777888876 33456667778899999975433211111 11111245556666654
Q ss_pred eEEEEeCCCHHH------HHHHHHHHHHHhhcc-CCcEEEEEEe
Q 016909 230 RSIRVDGNDALA------IYSAVHAAREMAIGE-GRPILIEALT 266 (380)
Q Consensus 230 ~~~~VdG~D~~a------v~~a~~~A~~~ar~~-~gP~lIe~~t 266 (380)
...+|. ++.+ +...+++|+..+..+ .||+.|++-.
T Consensus 124 ~~~~v~--~~~~~~~~~~~~~~i~~A~~~a~~~~~GPV~l~iP~ 165 (432)
T TIGR00173 124 WSLDLP--LPEADEPLAYLRSTVDRAVAQAQGPPPGPVHINVPF 165 (432)
T ss_pred eeeeCC--CCCccccHHHHHHHHHHHHHHhhCCCCCCEEEeCCC
Confidence 455554 3333 666777777666664 4899998864
No 227
>PRK12315 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=88.56 E-value=2.2 Score=45.56 Aligned_cols=103 Identities=9% Similarity=0.007 Sum_probs=62.3
Q ss_pred ccHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcceeeecccccCCcCHHHHHhhc
Q 016909 148 QLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAY 227 (380)
Q Consensus 148 ~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~ 227 (380)
.+++|.|+|+. | -+++++.+.+ |.+-.+-+-.+-++..++||+|++..-++..+++++.. ..|++-...--
T Consensus 332 ~v~~AaGlA~~----G-~~Pvv~~fs~--Fl~ra~dQi~~d~a~~~lpv~~~~~~~g~~~dG~TH~~--~~Dia~lr~iP 402 (581)
T PRK12315 332 SVAFASGIAAN----G-ARPVIFVNST--FLQRAYDQLSHDLAINNNPAVMIVFGGSISGNDVTHLG--IFDIPMISNIP 402 (581)
T ss_pred HHHHHHHHHHC----c-CeEEEEeeHH--HHHHHHHHHHHHHHhcCCCEEEEEECCcccCCCccccc--cHHHHHHhcCC
Confidence 34556666653 3 3445555543 43323333455578899999999997776544554432 23333222222
Q ss_pred CeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEE
Q 016909 228 GVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEA 264 (380)
Q Consensus 228 G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~ 264 (380)
|+.++. --|..++..+++.|++. .++|+.|-.
T Consensus 403 nl~V~~--P~d~~e~~~~l~~a~~~---~~gP~~ir~ 434 (581)
T PRK12315 403 NLVYLA--PTTKEELIAMLEWALTQ---HEHPVAIRV 434 (581)
T ss_pred CCEEEe--cCCHHHHHHHHHHHHhC---CCCcEEEEE
Confidence 565555 34889999999988752 468998854
No 228
>PLN02225 1-deoxy-D-xylulose-5-phosphate synthase
Probab=88.35 E-value=2.9 Score=45.36 Aligned_cols=103 Identities=10% Similarity=0.062 Sum_probs=62.7
Q ss_pred ccHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcce-eeecccccCCcCHHHHHhh
Q 016909 148 QLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAI-STPISDQFRSDGAVVKGRA 226 (380)
Q Consensus 148 ~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~i-~~~~~~~~~~~~~~~~a~a 226 (380)
.++.|.|+|.. .-++++++. ..|.+=.+-+-.+-++..++||+|+++.-++.. +++++. ...|++-...-
T Consensus 435 aVt~AAGLA~~-----G~kPvv~iy--stFlqRAyDQI~~Dval~~lpV~~vid~aGlvg~DG~TH~--g~~Dia~lr~I 505 (701)
T PLN02225 435 AVTFSAGLSSG-----GLKPFCIIP--SAFLQRAYDQVVHDVDRQRKAVRFVITSAGLVGSDGPVQC--GAFDIAFMSSL 505 (701)
T ss_pred HHHHHHHHHHC-----CCEEEEEee--hhHHHHHHHHHHHHHHhhcCCceEEEECCccCCCCCcccc--ccHHHHHHhcC
Confidence 34556666653 335666766 466553344455567889999999998766432 233322 22344322222
Q ss_pred cCeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEE
Q 016909 227 YGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEA 264 (380)
Q Consensus 227 ~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~ 264 (380)
-|+.++.-. |..++...+++|... .++|++|-.
T Consensus 506 Pnm~V~aPs--D~~El~~mL~~A~~~---~~gPv~IR~ 538 (701)
T PLN02225 506 PNMIAMAPA--DEDELVNMVATAAYV---TDRPVCFRF 538 (701)
T ss_pred CCCEEEeeC--CHHHHHHHHHHHHhc---CCCCEEEEe
Confidence 266666544 899999999887742 468999854
No 229
>cd01460 vWA_midasin VWA_Midasin: Midasin is a member of the AAA ATPase family. The proteins of this family are unified by their common archetectural organization that is based upon a conserved ATPase domain. The AAA domain of midasin contains six tandem AAA protomers. The AAA domains in midasin is followed by a D/E rich domain that is following by a VWA domain. The members of this subgroup have a conserved MIDAS motif. The function of this domain is not exactly known although it has been speculated to play a crucial role in midasin function.
Probab=88.17 E-value=7 Score=37.53 Aligned_cols=84 Identities=17% Similarity=0.044 Sum_probs=57.8
Q ss_pred eeEEEeCccc--cCcchHHHHHHHHHHcCCCEEEEEEcCC---cceeeeccc--ccCCc-CHHHHHhhcCeeEEEEeCCC
Q 016909 167 CAVTYFGDGG--TSEGDFHAALNFSAVTEAPVIFICRNNG---WAISTPISD--QFRSD-GAVVKGRAYGVRSIRVDGND 238 (380)
Q Consensus 167 ~vv~~~GDG~--~~eG~~~Eal~~A~~~~Lpvi~vv~NN~---~~i~~~~~~--~~~~~-~~~~~a~a~G~~~~~VdG~D 238 (380)
.+++++.||. ..+|..-..+.-|...++-++||+.+|. -+|...... ..... .+....+.|++|.+.|- +|
T Consensus 166 qlilLISDG~~~~~e~~~~~~~r~a~e~~i~l~~I~ld~~~~~~SI~d~~~~~~~~~~~~~l~~Yl~~fpfpYy~~~-~~ 244 (266)
T cd01460 166 QLLLIISDGRGEFSEGAQKVRLREAREQNVFVVFIIIDNPDNKQSILDIKVVSFKNDKSGVITPYLDEFPFPYYVIV-RD 244 (266)
T ss_pred cEEEEEECCCcccCccHHHHHHHHHHHcCCeEEEEEEcCCCCCCCcccccccccCCCCccHHHHHHhcCCCCeEEEe-cC
Confidence 8999999999 8888887778888888996666555443 233211110 00111 46678899999988764 48
Q ss_pred HHHHHHHHHHHHH
Q 016909 239 ALAIYSAVHAARE 251 (380)
Q Consensus 239 ~~av~~a~~~A~~ 251 (380)
+.++..++..++.
T Consensus 245 ~~~lp~~l~~~lr 257 (266)
T cd01460 245 LNQLPSVLSDALR 257 (266)
T ss_pred hhHhHHHHHHHHH
Confidence 8888888877763
No 230
>TIGR03336 IOR_alpha indolepyruvate ferredoxin oxidoreductase, alpha subunit. Indolepyruvate ferredoxin oxidoreductase (IOR) is an alpha 2/beta 2 tetramer related to ketoacid oxidoreductases for pyruvate (1.2.7.1, POR), 2-ketoglutarate (1.2.7.3, KOR), and 2-oxoisovalerate (1.2.7.7, VOR). These multi-subunit enzymes typically are found in anaerobes and are inactiviated by oxygen. IOR in Pyrococcus acts in fermentation of all three aromatic amino acids, following removal of the amino group by transamination. In Methanococcus maripaludis, by contrast, IOR acts in the opposite direction, in pathways of amino acid biosynthesis from phenylacetate, indoleacetate, and p-hydroxyphenylacetate. In M. maripaludis and many other species, iorA and iorB are found next to an apparent phenylacetate-CoA ligase.
Probab=87.62 E-value=3.4 Score=44.18 Aligned_cols=109 Identities=18% Similarity=0.152 Sum_probs=67.6
Q ss_pred cHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHc--CCCEEEEEEcCCcceeeecccccCCcCHHHHHhh
Q 016909 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVT--EAPVIFICRNNGWAISTPISDQFRSDGAVVKGRA 226 (380)
Q Consensus 149 ~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~--~Lpvi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a 226 (380)
+.+|+|+++| +.++++.+-=.+++ ...|.|..++.. .+|+|+++-|.. + +...+....|.. .++.
T Consensus 59 ~~~~~GAs~a------G~ra~t~ts~~Gl~--~~~e~l~~~~~~g~~~~iV~~~~~~~-g---p~~~~~~q~d~~-~~~~ 125 (595)
T TIGR03336 59 VEVAAGAAWS------GLRAFCTMKHVGLN--VAADPLMTLAYTGVKGGLVVVVADDP-S---MHSSQNEQDTRH-YAKF 125 (595)
T ss_pred HHHHHHHHhc------CcceEEEccCCchh--hhHHHhhhhhhhcCcCceEEEEccCC-C---CccchhhHhHHH-HHHh
Confidence 5678888886 33444444333342 345667666644 457777776542 1 111111112221 3445
Q ss_pred cCeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCCCCCC
Q 016909 227 YGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTT 274 (380)
Q Consensus 227 ~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R~~gHs~ 274 (380)
.+|+++... |+.++++...+|++.+++.+-|++|-..+ + -+|+.
T Consensus 126 ~~~~vl~p~--~~qE~~d~~~~Af~lae~~~~PV~v~~d~-~-l~h~~ 169 (595)
T TIGR03336 126 AKIPCLEPS--TPQEAKDMVKYAFELSEKFGLPVILRPTT-R-ISHMR 169 (595)
T ss_pred cCCeEECCC--CHHHHHHHHHHHHHHHHHHCCCEEEEEee-e-eccce
Confidence 688866544 89999999999999999999999998875 3 34554
No 231
>COG4032 Predicted thiamine-pyrophosphate-binding protein [General function prediction only]
Probab=87.57 E-value=2.6 Score=36.47 Aligned_cols=107 Identities=15% Similarity=0.124 Sum_probs=68.0
Q ss_pred CccHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHH-HHHHHcCCCEEEEEEcCCcceeeecccccC-CcCHHHHH
Q 016909 147 TQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAAL-NFSAVTEAPVIFICRNNGWAISTPISDQFR-SDGAVVKG 224 (380)
Q Consensus 147 ~~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal-~~A~~~~Lpvi~vv~NN~~~i~~~~~~~~~-~~~~~~~a 224 (380)
-|++++.|+.+|-| ...+.+- ..++ |...-+| .+-..+++|++.++...++-...- ..|.+ +.-+.+..
T Consensus 53 eg~GIcAGa~lAGk-----k~ailmQ-nsGl--GNsiNal~SL~~ty~iPl~ml~ShRG~~~E~i-~AQVpmGr~~~kiL 123 (172)
T COG4032 53 EGVGICAGAYLAGK-----KPAILMQ-NSGL--GNSINALASLYVTYKIPLLMLASHRGVLKEGI-EAQVPMGRALPKIL 123 (172)
T ss_pred cceeeehhhhhcCC-----CcEEEEe-ccCc--chHHHHHHHHHHHhccchhhhhhccchhhcCC-ccccccchhhHHHH
Confidence 35677889988842 3333333 2222 2222222 223468899999988877643322 22222 33456888
Q ss_pred hhcCeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEE
Q 016909 225 RAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEA 264 (380)
Q Consensus 225 ~a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~ 264 (380)
+..++|.+++. .+++-+..+..+...+-+..+|+.+-+
T Consensus 124 e~~~lpt~t~~--~p~Ea~~li~~~~~~a~~~s~pv~vll 161 (172)
T COG4032 124 EGLELPTYTII--GPEEALPLIENAILDAFENSRPVAVLL 161 (172)
T ss_pred hhcCCcccccC--CHHHHHHHHHHHHHHHHHcCCceEEEe
Confidence 99999999988 677878888888877777889987654
No 232
>PTZ00182 3-methyl-2-oxobutanate dehydrogenase; Provisional
Probab=87.03 E-value=4.8 Score=40.28 Aligned_cols=99 Identities=17% Similarity=0.121 Sum_probs=58.4
Q ss_pred ccHHHHHHHHHhhhcCCCceeEEE-eCccccCcchHHHHHHHHHHc--------CCCEEEEEEcCCcceeeecccccCCc
Q 016909 148 QLPHAVGAAYALKMDRKDACAVTY-FGDGGTSEGDFHAALNFSAVT--------EAPVIFICRNNGWAISTPISDQFRSD 218 (380)
Q Consensus 148 ~~p~AvG~A~A~k~~~~~~~vv~~-~GDG~~~eG~~~Eal~~A~~~--------~Lpvi~vv~NN~~~i~~~~~~~~~~~ 218 (380)
.+++|.|+|++ | .++++++ +.| |.+-.+-+-.+-++.+ ++|+|++.....++..++++.+.
T Consensus 94 ~vg~AaGlA~~----G-~~Pvv~~~fa~--Fl~ra~dQi~~d~a~~~~~~~g~~~v~vv~~~~~g~~g~~G~tHs~~--- 163 (355)
T PTZ00182 94 FAGFAIGAAMN----G-LRPIAEFMFAD--FIFPAFDQIVNEAAKYRYMSGGQFDCPIVIRGPNGAVGHGGAYHSQS--- 163 (355)
T ss_pred HHHHHHHHHhC----C-CEEEEEechhh--HHHHHHHHHHHHHHHhhcccCCCccCCEEEEeCCCCCCCCCCcccch---
Confidence 35667777764 2 2334433 343 3222333334445543 56888876655666666655332
Q ss_pred CHHHHHhhc-CeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEE
Q 016909 219 GAVVKGRAY-GVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIE 263 (380)
Q Consensus 219 ~~~~~a~a~-G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe 263 (380)
+....+++ |+.++.-- |+.++..+++.+++. ++|++|-
T Consensus 164 -~ea~lr~iPn~~V~~Ps--d~~e~~~~l~~a~~~----~~P~~i~ 202 (355)
T PTZ00182 164 -FEAYFAHVPGLKVVAPS--DPEDAKGLLKAAIRD----PNPVVFF 202 (355)
T ss_pred -HHHHHhcCCCCEEEeeC--CHHHHHHHHHHHHhC----CCcEEEE
Confidence 22445554 67766654 889999999998863 7899773
No 233
>PRK12754 transketolase; Reviewed
Probab=86.74 E-value=3.3 Score=44.87 Aligned_cols=104 Identities=12% Similarity=0.005 Sum_probs=64.4
Q ss_pred cHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcceeeecccccCCcCHHHHHhhcC
Q 016909 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 228 (380)
Q Consensus 149 ~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~G 228 (380)
+++|.|+|+- +.-.+.++.+ ..|.+ ..++++.+++..+|||++|....+++.........+.++++-.-.--|
T Consensus 415 v~iaaGlA~~----~G~~Pf~~tf--~~F~~-r~~~qir~~a~~~l~V~~v~th~gi~~G~DG~THq~iEdla~lR~iPn 487 (663)
T PRK12754 415 TAIANGIALH----GGFLPYTSTF--LMFVE-YARNAVRMAALMKQRQVMVYTHDSIGLGEDGPTHQPVEQVASLRVTPN 487 (663)
T ss_pred HHHHhhHHhc----CCCeEEEEee--HHHHH-HHHHHHHHHHHcCCCeEEEEECCccccCCCCCCcccHHHHHHHhcCCC
Confidence 4566677652 1112333333 35554 678899999999999999998888766432222233334333222225
Q ss_pred eeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEE
Q 016909 229 VRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEA 264 (380)
Q Consensus 229 ~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~ 264 (380)
+.+++- -|..++..+++.++++ .++|+.|-+
T Consensus 488 ~~V~~P--aD~~E~~~~~~~a~~~---~~gP~yirl 518 (663)
T PRK12754 488 MSTWRP--CDQVESAVAWKYGVER---QDGPTALIL 518 (663)
T ss_pred cEEecC--CCHHHHHHHHHHHHhC---CCCCEEEEe
Confidence 555553 3888999998888863 468997643
No 234
>COG0021 TktA Transketolase [Carbohydrate transport and metabolism]
Probab=86.36 E-value=2.4 Score=45.17 Aligned_cols=78 Identities=17% Similarity=0.152 Sum_probs=56.1
Q ss_pred HHHHHHHHHHcCCCEEEEEEcCCcceeeecccccCCcCHHHHHhhcCeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEE
Q 016909 182 FHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPIL 261 (380)
Q Consensus 182 ~~Eal~~A~~~~Lpvi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~l 261 (380)
..-++.+|+..++|++||..-..++.........+.+.++.+=.-.++.+++-- |..+...|.+.|+++ .++|+.
T Consensus 441 ~r~AiRlaALm~l~~~~V~THDSIgvGEDGPTHqPiEqLa~LRaiPN~~V~RPa--D~~Et~~aw~~Al~~---~~gPt~ 515 (663)
T COG0021 441 ARPAVRLAALMGLPVIYVFTHDSIGVGEDGPTHQPVEQLASLRAIPNLSVIRPA--DANETAAAWKYALER---KDGPTA 515 (663)
T ss_pred hhHHHHHHHhcCCCeEEEEecCceecCCCCCCCCcHHHHHHhhccCCceeEecC--ChHHHHHHHHHHHhc---CCCCeE
Confidence 345799999999999999999988765433333344555544444588888843 566788888888875 689998
Q ss_pred EEE
Q 016909 262 IEA 264 (380)
Q Consensus 262 Ie~ 264 (380)
|..
T Consensus 516 Lil 518 (663)
T COG0021 516 LIL 518 (663)
T ss_pred EEE
Confidence 865
No 235
>PRK09212 pyruvate dehydrogenase subunit beta; Validated
Probab=86.21 E-value=6.1 Score=39.01 Aligned_cols=105 Identities=19% Similarity=0.116 Sum_probs=59.3
Q ss_pred ccHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHc--------CCCEEEEEEcCCcceeeecccccCCcC
Q 016909 148 QLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVT--------EAPVIFICRNNGWAISTPISDQFRSDG 219 (380)
Q Consensus 148 ~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~--------~Lpvi~vv~NN~~~i~~~~~~~~~~~~ 219 (380)
.++.|.|+|++ | .++++++.. ..|.+=.+-+-.+-++.+ ++|+++...+-.++..++++.+.
T Consensus 63 ~vg~AaGlA~~----G-~~Piv~~~~-~~f~~ra~dQi~~d~a~~~~~~~~~~~v~vv~~~~~g~~~~~G~tH~~~---- 132 (327)
T PRK09212 63 FAGLAVGAAFA----G-LRPIVEFMT-FNFSMQAIDQIVNSAAKTNYMSGGQLKCPIVFRGPNGAAARVAAQHSQC---- 132 (327)
T ss_pred HHHHHHHHHHc----C-CeeEEEeeh-hhHHHHHHHHHHHHHHHHhhccCCCcCccEEEEeCCCCCCCCCcccccC----
Confidence 45667777764 2 244445442 111111122223344444 57888887765565555554332
Q ss_pred HHHHHhhc-CeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeec
Q 016909 220 AVVKGRAY-GVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 268 (380)
Q Consensus 220 ~~~~a~a~-G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R 268 (380)
+....+++ |+.++.- .|+.++..+++.|++ .++|++|-..-.|
T Consensus 133 ~ea~~r~iP~l~V~~P--~d~~e~~~~l~~a~~----~~~Pv~i~~~~~~ 176 (327)
T PRK09212 133 YAAWYSHIPGLKVVAP--YFAADCKGLLKTAIR----DPNPVIFLENEIL 176 (327)
T ss_pred HHHHHhcCCCCEEEee--CCHHHHHHHHHHHHh----CCCcEEEEEchhh
Confidence 22445544 6666654 489999999998885 3789988444333
No 236
>PLN02790 transketolase
Probab=85.70 E-value=5.1 Score=43.41 Aligned_cols=99 Identities=18% Similarity=0.154 Sum_probs=60.6
Q ss_pred cHHHHHHHHHhhhcC-CCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcce--eeecccccCCcCHHHHHh
Q 016909 149 LPHAVGAAYALKMDR-KDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAI--STPISDQFRSDGAVVKGR 225 (380)
Q Consensus 149 ~p~AvG~A~A~k~~~-~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~i--~~~~~~~~~~~~~~~~a~ 225 (380)
+++|.|+|+. + .-.++++.+ ..|.. ...+++.+++..+|||+||+...+.+. +++++. + +.+.+-
T Consensus 405 v~~AaGlA~~----G~G~~P~~~tf--~~F~~-~~~~~ir~~al~~lpV~~v~thdg~~~G~DG~THq--~---iedla~ 472 (654)
T PLN02790 405 GAICNGIALH----SSGLIPYCATF--FVFTD-YMRAAMRLSALSEAGVIYVMTHDSIGLGEDGPTHQ--P---IEHLAS 472 (654)
T ss_pred HHHHHHHHhc----CCCcEEEEEec--HHHHH-HHHHHHHHHHhcCCCeEEEEECCceeecCCCCCcc--c---HHHHHH
Confidence 4566666652 2 123344433 12232 456788889999999999997777654 333332 2 334433
Q ss_pred hc---CeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEE
Q 016909 226 AY---GVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEA 264 (380)
Q Consensus 226 a~---G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~ 264 (380)
-- |+.+++ --|..++..+++.|++. .++|+.|-.
T Consensus 473 lR~iPnl~V~~--PaD~~E~~~~l~~al~~---~~gP~~irl 509 (654)
T PLN02790 473 LRAMPNILMLR--PADGNETAGAYKVAVTN---RKRPTVLAL 509 (654)
T ss_pred hcCCCCcEEEe--CCCHHHHHHHHHHHHHc---CCCCEEEEe
Confidence 33 455554 34888999999888763 468988854
No 237
>PRK12753 transketolase; Reviewed
Probab=85.52 E-value=5.1 Score=43.50 Aligned_cols=104 Identities=15% Similarity=0.008 Sum_probs=65.4
Q ss_pred ccHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcceeeecccccCCcCHHHHHhhc
Q 016909 148 QLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAY 227 (380)
Q Consensus 148 ~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~ 227 (380)
.+++|.|+|+- +.-.++++.+ +.|.+ -.++.+.+++..+|||++|....+++.........+.++++- .++.
T Consensus 414 mv~~aaGlA~~----~G~~P~~~tf--~~F~~-r~~~qir~~a~~~l~V~~v~thdg~~~G~DG~THq~iedla~-lR~i 485 (663)
T PRK12753 414 MTAIANGIAHH----GGFVPYTATF--LMFVE-YARNAARMAALMKARQIMVYTHDSIGLGEDGPTHQPVEQLAS-LRLT 485 (663)
T ss_pred HHHHHHHHHHh----CCCeEEEEeh--HHHHH-HHHHHHHHHHhcCCCeEEEEeCCCcccCCCCcccccHHHHHH-HhcC
Confidence 35566677651 1223444444 36655 678899999999999999988888765322222223333332 2332
Q ss_pred -CeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEE
Q 016909 228 -GVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEA 264 (380)
Q Consensus 228 -G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~ 264 (380)
|+.+++-- |..++..+++.|++. .++|+.|-+
T Consensus 486 Pn~~v~~Pa--D~~E~~~~~~~al~~---~~gP~~irl 518 (663)
T PRK12753 486 PNFSTWRPC--DQVEAAVAWKLAIER---HNGPTALIL 518 (663)
T ss_pred CCCEEEccC--CHHHHHHHHHHHHhc---CCCCEEEEe
Confidence 55565543 888999999888863 478987754
No 238
>COG0674 PorA Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit [Energy production and conversion]
Probab=85.18 E-value=6.3 Score=39.56 Aligned_cols=111 Identities=16% Similarity=0.187 Sum_probs=74.3
Q ss_pred CccHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcceeee-cccccCCcCHHHHHh
Q 016909 147 TQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTP-ISDQFRSDGAVVKGR 225 (380)
Q Consensus 147 ~~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~i~~~-~~~~~~~~~~~~~a~ 225 (380)
+.++.++|+++|- -+..-...|.|-. ..+|++-+|+-..+|+|+++.+........ +.. ...|+... +
T Consensus 58 ~a~s~v~GA~~aG-----ar~~TaTSg~Gl~---Lm~E~l~~a~~~~~P~Vi~~~~R~~ps~g~p~~~--dq~D~~~~-r 126 (365)
T COG0674 58 GAISAVIGASYAG-----ARAFTATSGQGLL---LMAEALGLAAGTETPLVIVVAQRPLPSTGLPIKG--DQSDLMAA-R 126 (365)
T ss_pred HHHHHHHHHHhhC-----cceEeecCCccHH---HHHHHHHHHHhccCCeEEEEeccCcCCCcccccc--cHHHHHHH-H
Confidence 3478889998873 2344455555554 368999999999999999988877543322 111 11122221 1
Q ss_pred hcCeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCC
Q 016909 226 AYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVG 270 (380)
Q Consensus 226 a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R~~ 270 (380)
.-||+.+... ++.+.+...-.|...+.+..-|+++-..-++..
T Consensus 127 ~~g~~~~~~~--s~qEa~d~t~~Af~iAe~~~~Pvi~~~D~~~~~ 169 (365)
T COG0674 127 DTGFPILVSA--SVQEAFDLTLLAFNIAEKVLTPVIVLLDGFLAS 169 (365)
T ss_pred ccCceEEeec--cHHHHHHHHHHHHHHHHHhcCCEEEeeccchhc
Confidence 1288888776 888887777778777777788999987776654
No 239
>PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding
Probab=84.10 E-value=3.8 Score=49.14 Aligned_cols=106 Identities=15% Similarity=0.127 Sum_probs=67.5
Q ss_pred HHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcceeeecccccCCcCHHHHHhhcCe
Q 016909 150 PHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGV 229 (380)
Q Consensus 150 p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~G~ 229 (380)
-+|.|.|.+. +...+++|..|=|.++ ..-++..|..-+.|||+|.-+-..........| ..|....++.+--
T Consensus 353 fmAdGyAR~T---gkpgV~i~TsGPG~tN---~l~av~eA~~d~vPlLvItgd~p~~~~~~ga~Q--~iDq~~lf~pvtK 424 (1655)
T PLN02980 353 FHALGYARGS---LKPAVVITSSGTAVSN---LLPAVVEASQDFVPLLLLTADRPPELQDAGANQ--AINQVNHFGSFVR 424 (1655)
T ss_pred HHHHHHHHHh---CCCEEEEEeCcHHHHH---HHHHHHHHhhcCCCEEEEeCCCCHHHhcCCCCc--ccchhhHHHhhhh
Confidence 4677777653 4556777777888876 456677788889999999876543221111111 1244556666654
Q ss_pred eEEEEeCCCHHH------HHHHHHHHHHHhhcc-CCcEEEEEE
Q 016909 230 RSIRVDGNDALA------IYSAVHAAREMAIGE-GRPILIEAL 265 (380)
Q Consensus 230 ~~~~VdG~D~~a------v~~a~~~A~~~ar~~-~gP~lIe~~ 265 (380)
...+|. ++.. +..++++|+..++.+ .||+.|++-
T Consensus 425 ~s~~v~--~p~~~~~~~~l~~~v~~A~~~A~s~rpGPVhL~iP 465 (1655)
T PLN02980 425 FFFNLP--PPTDLIPARMVLTTLDSAVHWATSSPCGPVHINCP 465 (1655)
T ss_pred eeecCC--CccchhhHHHHHHHHHHHHHHHhCCCCCCEEEECc
Confidence 555553 4433 346777777777676 499999996
No 240
>CHL00144 odpB pyruvate dehydrogenase E1 component beta subunit; Validated
Probab=81.54 E-value=12 Score=36.98 Aligned_cols=99 Identities=12% Similarity=0.002 Sum_probs=53.8
Q ss_pred ccHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHH-HHHHHHc--------CCCEEEEEEcCCcceeeecccccCCc
Q 016909 148 QLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAA-LNFSAVT--------EAPVIFICRNNGWAISTPISDQFRSD 218 (380)
Q Consensus 148 ~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Ea-l~~A~~~--------~Lpvi~vv~NN~~~i~~~~~~~~~~~ 218 (380)
.++.|+|+|++ | .+++++++.---++ -.+|- .|-++.+ ++|++++.-.-.+...++++.+
T Consensus 63 ~vg~AaGlA~~----G-~~pvv~~~~~~f~~--ra~dQi~~~~a~~~~~~gg~~~~~vv~~~~g~~~~~~G~tHs~---- 131 (327)
T CHL00144 63 FTGMAIGAAMT----G-LRPIVEGMNMGFLL--LAFNQISNNAGMLHYTSGGNFTIPIVIRGPGGVGRQLGAEHSQ---- 131 (327)
T ss_pred HHHHHHHHHHC----C-CEEEEEeehhhHHH--HHHHHHHHHHHHHhhccCCCccCCEEEEecCCCCCCCCccccc----
Confidence 45667777764 2 23444334311111 22333 3444444 6788887432223233443322
Q ss_pred CHHHHHhhc-CeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEE
Q 016909 219 GAVVKGRAY-GVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIE 263 (380)
Q Consensus 219 ~~~~~a~a~-G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe 263 (380)
.+....+.+ |+.++.-. |+.+.+..++.|++ .++|++|-
T Consensus 132 ~~ea~~~~iPgl~V~~Ps--d~~d~~~~l~~a~~----~~~Pv~ir 171 (327)
T CHL00144 132 RLESYFQSVPGLQIVACS--TPYNAKGLLKSAIR----SNNPVIFF 171 (327)
T ss_pred cHHHHHhcCCCCEEEEeC--CHHHHHHHHHHHHh----CCCcEEEE
Confidence 233455554 66666654 89999999988875 47899874
No 241
>TIGR03393 indolpyr_decarb indolepyruvate decarboxylase, Erwinia family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. Within the larger family, this model represents a clade of bacterial indolepyruvate decarboxylases, part of a pathway for biosynthesis of the plant hormone indole-3-acetic acid. Typically, these species interact with plants, as pathogens or as beneficial, root-associated bacteria.
Probab=77.77 E-value=15 Score=38.59 Aligned_cols=108 Identities=20% Similarity=0.107 Sum_probs=58.1
Q ss_pred cHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCccee---eeccccc---CCcCHHH
Q 016909 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAIS---TPISDQF---RSDGAVV 222 (380)
Q Consensus 149 ~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~i~---~~~~~~~---~~~~~~~ 222 (380)
.-+|-|.|.+. + ..++++..|=|.++ ..-++-.|..-+.|||+|+-.-...-. ...+... ...++.+
T Consensus 52 ~~mAdgyar~t---g-~gv~~~t~GPG~~n---~~~gla~A~~d~~Pvl~I~G~~~~~~~~~~~~~~~~~~~~~~q~~~~ 124 (539)
T TIGR03393 52 AYAADGYARCK---G-AAALLTTFGVGELS---AINGIAGSYAEHLPVIHIVGAPGTAAQQRGELLHHTLGDGDFRHFYR 124 (539)
T ss_pred HHHhhhhhhhc---C-ceEEEEecCccHHH---HhhHHHHHhhccCCEEEEECCCCcchhhcCceeeeecCCCchHHHHH
Confidence 44566766653 3 24666677988876 223466677888999999853332100 0000000 0112233
Q ss_pred HHhhcCeeEEEEeCCC-HHHHHHHHHHHHHHhhccCCcEEEEEEee
Q 016909 223 KGRAYGVRSIRVDGND-ALAIYSAVHAAREMAIGEGRPILIEALTY 267 (380)
Q Consensus 223 ~a~a~G~~~~~VdG~D-~~av~~a~~~A~~~ar~~~gP~lIe~~t~ 267 (380)
.++..--....++-.+ +..+.++++.|+. ..||+.|++-..
T Consensus 125 ~~~~itk~~~~~~~~~~~~~i~~a~~~A~~----~~gPv~l~iP~D 166 (539)
T TIGR03393 125 MAAEVTVAQAVLTEQNATAEIDRVITTALR----ERRPGYLMLPVD 166 (539)
T ss_pred HhhceEEEEEEeChhhhHHHHHHHHHHHHh----cCCCEEEEeccc
Confidence 4443322233333334 5666666666664 568999988654
No 242
>COG3958 Transketolase, C-terminal subunit [Carbohydrate transport and metabolism]
Probab=77.09 E-value=12 Score=36.25 Aligned_cols=102 Identities=15% Similarity=0.084 Sum_probs=61.9
Q ss_pred ccHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHH-HHcCCCEEEEEEcCCcceeeecccccCCcCHHHHHhh
Q 016909 148 QLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFS-AVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRA 226 (380)
Q Consensus 148 ~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A-~~~~Lpvi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a 226 (380)
.++.|.|.|++-| .+.++. =+.|..+-.||=+..+ +..+|||-+|+.+-+++.......... +.+.|--
T Consensus 61 mvg~AAGLA~~Gk-----~Pfv~t--fa~F~s~Ra~EQir~~iay~~lnVKiv~t~~G~t~g~dG~sHq~---~EDiaim 130 (312)
T COG3958 61 MVGTAAGLALAGK-----KPFVST--FAAFLSRRAWEQIRNSIAYNNLNVKIVATHAGVTYGEDGSSHQA---LEDIAIM 130 (312)
T ss_pred HHHHHHHHHhcCC-----Cceeec--hHHHHHHHHHHHHHHHhhhccCCeEEEEecCCcccCCCCccchh---HHHHHHH
Confidence 4677888887632 334443 3677777777766655 466889999999998754322222222 3444433
Q ss_pred cCeeEEE-EeCCCHHHHHHHHHHHHHHhhccCCcEEEE
Q 016909 227 YGVRSIR-VDGNDALAIYSAVHAAREMAIGEGRPILIE 263 (380)
Q Consensus 227 ~G~~~~~-VdG~D~~av~~a~~~A~~~ar~~~gP~lIe 263 (380)
-|+|-.. +.--|..+..+++..+.++ +||+-+-
T Consensus 131 R~lpn~~V~~P~D~v~~~~i~~~~~~~----~GP~Y~R 164 (312)
T COG3958 131 RGLPNMTVIAPADAVETRAILDQIADY----KGPVYMR 164 (312)
T ss_pred hcCCCceEEccCcHHHHHHHHHHHHhc----CCCEEEE
Confidence 3444333 2334666777777666654 8998773
No 243
>smart00861 Transket_pyr Transketolase, pyrimidine binding domain. Transketolase (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Hansenula polymorpha, there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates.
Probab=74.61 E-value=26 Score=30.58 Aligned_cols=100 Identities=18% Similarity=0.192 Sum_probs=57.2
Q ss_pred cHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcC-CCEEEEEEc-CCcceeeecccccCCcCHHHHHhh
Q 016909 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTE-APVIFICRN-NGWAISTPISDQFRSDGAVVKGRA 226 (380)
Q Consensus 149 ~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~-Lpvi~vv~N-N~~~i~~~~~~~~~~~~~~~~a~a 226 (380)
+++|.|+|+. +. .++++++.. +.. ...+.+.++..++ +|+|+.... ..++..++++.. ..+++ ....
T Consensus 62 vg~a~GlA~~----G~-~pi~~~~~~--f~~-~a~~~~~~~~~~~~~~~v~~~~~g~~~g~~G~tH~~--~~~~~-~~~~ 130 (168)
T smart00861 62 VGFAAGLALA----GL-RPVVAIFFT--FFD-RAKDQIRSDGAMGRVPVVVRHDSGGGVGEDGPTHHS--QEDEA-LLRA 130 (168)
T ss_pred HHHHHHHHHc----CC-CcEEEeeHH--HHH-HHHHHHHHhCcccCCCEEEEecCccccCCCCccccc--hhHHH-HHhc
Confidence 4556666665 33 455555533 322 3567777777776 677666654 444444443322 22222 2222
Q ss_pred c-CeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEE
Q 016909 227 Y-GVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEA 264 (380)
Q Consensus 227 ~-G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~ 264 (380)
+ |+.++. -.|+.++...++.++++ .++|+.|-+
T Consensus 131 iP~~~v~~--P~~~~e~~~~l~~a~~~---~~~p~~i~~ 164 (168)
T smart00861 131 IPGLKVVA--PSDPAEAKGLLRAAIRR---DDGPPVIRL 164 (168)
T ss_pred CCCcEEEe--cCCHHHHHHHHHHHHhC---CCCCEEEEe
Confidence 2 455444 45999999999999853 568977643
No 244
>COG1154 Dxs Deoxyxylulose-5-phosphate synthase [Coenzyme metabolism / Lipid metabolism]
Probab=70.54 E-value=21 Score=37.98 Aligned_cols=103 Identities=14% Similarity=0.161 Sum_probs=61.9
Q ss_pred ccHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCC-cceeeecccccCCcCHHHHHhh
Q 016909 148 QLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPISDQFRSDGAVVKGRA 226 (380)
Q Consensus 148 ~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~-~~i~~~~~~~~~~~~~~~~a~a 226 (380)
|..+..++++|.. .-++|+++. ..|-|=.+-+-+.=.+..+|||+|+++-.+ .+.+++++.... |++-..
T Consensus 368 QHAVT~AAGlA~~---G~kPvvaIY--STFLQRAYDQliHDvaiqnLPV~faIDRAGivG~DG~TH~G~f--Dls~l~-- 438 (627)
T COG1154 368 QHAVTFAAGLAAE---GMKPVVAIY--STFLQRAYDQLIHDVAIQNLPVTFAIDRAGIVGADGPTHQGLF--DLSFLR-- 438 (627)
T ss_pred HHHHHHHHHHHhC---CCCCEEEEe--cHHHHHHHHHHHHHHHhccCCeEEEEecCcccCCCCCccccHH--HHHHHh--
Confidence 3444444444432 334566665 233333344445556778999999999766 456666654321 232222
Q ss_pred cCeeEEEE-eCCCHHHHHHHHHHHHHHhhccCCcEEEE
Q 016909 227 YGVRSIRV-DGNDALAIYSAVHAAREMAIGEGRPILIE 263 (380)
Q Consensus 227 ~G~~~~~V-dG~D~~av~~a~~~A~~~ar~~~gP~lIe 263 (380)
-+|.+.+ --.|..++...+.+|..+ .++|+.|-
T Consensus 439 -~iPnmvi~aP~de~el~~ml~ta~~~---~~gP~AiR 472 (627)
T COG1154 439 -CIPNMVIMAPRDEEELRQMLYTALAQ---DDGPVAIR 472 (627)
T ss_pred -cCCCcEEecCCCHHHHHHHHHHHHhc---CCCCeEEE
Confidence 3444443 345999999999999986 56899884
No 245
>COG1240 ChlD Mg-chelatase subunit ChlD [Coenzyme metabolism]
Probab=69.16 E-value=34 Score=32.66 Aligned_cols=98 Identities=20% Similarity=0.123 Sum_probs=59.3
Q ss_pred cccCccHHHHHHHHHhhhcCCC-ceeEEEeCccccC----cchHHHHHHHHHHcCC-CEEEEEEcCCcceeeecccccCC
Q 016909 144 TIATQLPHAVGAAYALKMDRKD-ACAVTYFGDGGTS----EGDFHAALNFSAVTEA-PVIFICRNNGWAISTPISDQFRS 217 (380)
Q Consensus 144 ~lG~~~p~AvG~A~A~k~~~~~-~~vv~~~GDG~~~----eG~~~Eal~~A~~~~L-pvi~vv~NN~~~i~~~~~~~~~~ 217 (380)
+|+.++-.|..+..-.+.++++ ..+++++-||-.+ .|...|++..|....+ ++-++|.|-. ... ...
T Consensus 155 PL~~aL~~a~ev~~r~~r~~p~~~~~~vviTDGr~n~~~~~~~~~e~~~~a~~~~~~g~~~lvid~e------~~~-~~~ 227 (261)
T COG1240 155 PLADALRQAYEVLAREKRRGPDRRPVMVVITDGRANVPIPLGPKAETLEAASKLRLRGIQLLVIDTE------GSE-VRL 227 (261)
T ss_pred chHHHHHHHHHHHHHhhccCCCcceEEEEEeCCccCCCCCCchHHHHHHHHHHHhhcCCcEEEEecC------Ccc-ccc
Confidence 4445454454444334444544 5788889999764 4556888888887665 4433332211 111 112
Q ss_pred cCHHHHHhhcCeeEEEEeCCCHHHHHHHHHH
Q 016909 218 DGAVVKGRAYGVRSIRVDGNDALAIYSAVHA 248 (380)
Q Consensus 218 ~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~ 248 (380)
.-..++|..+|.+.++++...-..+..+.+.
T Consensus 228 g~~~~iA~~~Gg~~~~L~~l~~~~i~~~~r~ 258 (261)
T COG1240 228 GLAEEIARASGGEYYHLDDLSDDSIVSAVRQ 258 (261)
T ss_pred cHHHHHHHHhCCeEEecccccchHHHHHHHh
Confidence 2245789999999999997766666666554
No 246
>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]
Probab=67.99 E-value=8 Score=40.83 Aligned_cols=54 Identities=20% Similarity=0.248 Sum_probs=39.2
Q ss_pred hHHHHHHHHHHc--CCCEEEEEEcCCcceeeecccccCCcCHHHHHhhcCeeEEEEeCCCHHHHH
Q 016909 181 DFHAALNFSAVT--EAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIY 243 (380)
Q Consensus 181 ~~~Eal~~A~~~--~Lpvi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~G~~~~~VdG~D~~av~ 243 (380)
....+|.-+.++ |||++++++|..-.-++ +-.+.++.||++++.||+|.|.+..
T Consensus 403 Dl~~aLED~~RhGqKlPL~VlvDnGsTeEDi---------pA~~~~k~Ygi~ivVVDHH~Pde~v 458 (715)
T COG1107 403 DLNFALEDAHRHGQKLPLLVLVDNGSTEEDI---------PAIKQLKAYGIDIVVVDHHYPDEAV 458 (715)
T ss_pred hHHHHHHHHHhcCCccceEEEEcCCCccccc---------HHHHHHHhcCCCEEEEcCCCCcchh
Confidence 455567777776 57999999986422221 2347899999999999999876643
No 247
>PF09851 SHOCT: Short C-terminal domain; InterPro: IPR018649 This family of hypothetical prokaryotic proteins has no known function.
Probab=66.15 E-value=9.4 Score=24.05 Aligned_cols=27 Identities=4% Similarity=0.147 Sum_probs=20.0
Q ss_pred hHHHHHHHHHHCCCCCHHHHHHHHHHHH
Q 016909 296 PVTRFRKWIESNGWWNGDIESELRSSVR 323 (380)
Q Consensus 296 Pi~~~~~~L~~~g~~t~~~~~~i~~~~~ 323 (380)
++..++. |.++|++|++|..+.++++.
T Consensus 4 ~L~~L~~-l~~~G~IseeEy~~~k~~ll 30 (31)
T PF09851_consen 4 RLEKLKE-LYDKGEISEEEYEQKKARLL 30 (31)
T ss_pred HHHHHHH-HHHcCCCCHHHHHHHHHHHh
Confidence 4444544 56789999999999887763
No 248
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=64.33 E-value=16 Score=30.10 Aligned_cols=47 Identities=23% Similarity=0.285 Sum_probs=29.4
Q ss_pred CcCHHHHHhhcCeeEEE--EeCCC-HHHHHHHHHHHHHHhhccCCcEEEEEEe
Q 016909 217 SDGAVVKGRAYGVRSIR--VDGND-ALAIYSAVHAAREMAIGEGRPILIEALT 266 (380)
Q Consensus 217 ~~~~~~~a~a~G~~~~~--VdG~D-~~av~~a~~~A~~~ar~~~gP~lIe~~t 266 (380)
..+..+.+++.|+..+. |++.+ -.+-..++.++++. ..+|+|+-|++
T Consensus 46 ~~~~~~~a~~~Gl~y~~iPv~~~~~~~~~v~~f~~~l~~---~~~Pvl~hC~s 95 (110)
T PF04273_consen 46 SAEEAAAAEALGLQYVHIPVDGGAITEEDVEAFADALES---LPKPVLAHCRS 95 (110)
T ss_dssp HHCHHHHHHHCT-EEEE----TTT--HHHHHHHHHHHHT---TTTSEEEE-SC
T ss_pred HHHHHHHHHHcCCeEEEeecCCCCCCHHHHHHHHHHHHh---CCCCEEEECCC
Confidence 34577889999998887 45433 34455566666654 57899999865
No 249
>PF13519 VWA_2: von Willebrand factor type A domain; PDB: 3IBS_B 3RAG_B 2X5N_A.
Probab=61.45 E-value=37 Score=28.62 Aligned_cols=73 Identities=16% Similarity=0.078 Sum_probs=45.2
Q ss_pred CceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcceeeecccccCCcCHHHHHhhcCeeEEEEeCCCHHHHHH
Q 016909 165 DACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYS 244 (380)
Q Consensus 165 ~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~G~~~~~VdG~D~~av~~ 244 (380)
....++++.||.-+ +...+.+..+...++++.+|........ ...+...++.-|..++.++ .+..++.+
T Consensus 99 ~~~~iv~iTDG~~~-~~~~~~~~~~~~~~i~i~~v~~~~~~~~---------~~~l~~la~~tgG~~~~~~-~~~~~l~~ 167 (172)
T PF13519_consen 99 RRRAIVLITDGEDN-SSDIEAAKALKQQGITIYTVGIGSDSDA---------NEFLQRLAEATGGRYFHVD-NDPEDLDD 167 (172)
T ss_dssp EEEEEEEEES-TTH-CHHHHHHHHHHCTTEEEEEEEES-TT-E---------HHHHHHHHHHTEEEEEEE--SSSHHHHH
T ss_pred CceEEEEecCCCCC-cchhHHHHHHHHcCCeEEEEEECCCccH---------HHHHHHHHHhcCCEEEEec-CCHHHHHH
Confidence 56889999999876 4455667766666667555544332211 1245677788888888883 25567777
Q ss_pred HHHH
Q 016909 245 AVHA 248 (380)
Q Consensus 245 a~~~ 248 (380)
++++
T Consensus 168 ~~~~ 171 (172)
T PF13519_consen 168 AFQQ 171 (172)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 6653
No 250
>cd01453 vWA_transcription_factor_IIH_type Transcription factors IIH type: TFIIH is a multiprotein complex that is one of the five general transcription factors that binds RNA polymerase II holoenzyme. Orthologues of these genes are found in all completed eukaryotic genomes and all these proteins contain a VWA domain. The p44 subunit of TFIIH functions as a DNA helicase in RNA polymerase II transcription initiation and DNA repair, and its transcriptional activity is dependent on its C-terminal Zn-binding domains. The function of the vWA domain is unclear, but may be involved in complex assembly. The MIDAS motif is not conserved in this sub-group.
Probab=59.04 E-value=78 Score=28.20 Aligned_cols=71 Identities=10% Similarity=-0.037 Sum_probs=47.1
Q ss_pred CceeEEEeCccccC-cchHHHHHHHHHHcCCCEEEEEEcCCcceeeecccccCCcCHHHHHhhcCeeEEEEeCCCHHHHH
Q 016909 165 DACAVTYFGDGGTS-EGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIY 243 (380)
Q Consensus 165 ~~~vv~~~GDG~~~-eG~~~Eal~~A~~~~Lpvi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~G~~~~~VdG~D~~av~ 243 (380)
.+.++++++||+-. .+...+....+...+++|.+|-..+. ..-+.+.|++-|-..+.+. |..++.
T Consensus 107 ~~~iiil~sd~~~~~~~~~~~~~~~l~~~~I~v~~IgiG~~------------~~~L~~ia~~tgG~~~~~~--~~~~l~ 172 (183)
T cd01453 107 SREVLIIFSSLSTCDPGNIYETIDKLKKENIRVSVIGLSAE------------MHICKEICKATNGTYKVIL--DETHLK 172 (183)
T ss_pred ceEEEEEEcCCCcCChhhHHHHHHHHHHcCcEEEEEEechH------------HHHHHHHHHHhCCeeEeeC--CHHHHH
Confidence 34578888888754 33455666677777776555443221 1236688999999999886 778887
Q ss_pred HHHHHH
Q 016909 244 SAVHAA 249 (380)
Q Consensus 244 ~a~~~A 249 (380)
+.+.++
T Consensus 173 ~~~~~~ 178 (183)
T cd01453 173 ELLLEH 178 (183)
T ss_pred HHHHhc
Confidence 777654
No 251
>PRK07449 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase; Validated
Probab=58.58 E-value=37 Score=35.90 Aligned_cols=48 Identities=19% Similarity=0.206 Sum_probs=33.0
Q ss_pred cHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEc
Q 016909 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRN 202 (380)
Q Consensus 149 ~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~N 202 (380)
.-+|.|.|.+. +.-.++++..|=|.++ ..-++..|...++|||+|.-.
T Consensus 60 ~~aAdgyar~t---g~~~v~~vt~GpG~~N---~l~~i~~A~~~~~Pvl~IsG~ 107 (568)
T PRK07449 60 GFLALGLAKAS---KRPVAVIVTSGTAVAN---LYPAVIEAGLTGVPLIVLTAD 107 (568)
T ss_pred HHHHHHHHHhh---CCCEEEEECCccHHHh---hhHHHHHHhhcCCcEEEEECC
Confidence 34566666553 3445677777888886 335677788889999999754
No 252
>COG0191 Fba Fructose/tagatose bisphosphate aldolase [Carbohydrate transport and metabolism]
Probab=58.41 E-value=90 Score=30.30 Aligned_cols=113 Identities=17% Similarity=0.176 Sum_probs=71.6
Q ss_pred CCceeEEEeCccccC-cc----hHHHHHHHHHHcCCCEEEEEEcCCcceeeecccccCCcCHHHHHhhcCeeEEEEeCC-
Q 016909 164 KDACAVTYFGDGGTS-EG----DFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGN- 237 (380)
Q Consensus 164 ~~~~vv~~~GDG~~~-eG----~~~Eal~~A~~~~Lpvi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~G~~~~~VdG~- 237 (380)
.+.+||+=+..|+.. .| ..+=...+|..+++||++=.|--. .......+--.|+.++-+||.
T Consensus 41 ~~sPvIiq~S~g~~~y~gg~~~~~~~v~~~a~~~~vPV~lHlDHg~------------~~~~~~~ai~~GFsSvMiDgS~ 108 (286)
T COG0191 41 EKSPVIIQFSEGAAKYAGGADSLAHMVKALAEKYGVPVALHLDHGA------------SFEDCKQAIRAGFSSVMIDGSH 108 (286)
T ss_pred hCCCEEEEecccHHHHhchHHHHHHHHHHHHHHCCCCEEEECCCCC------------CHHHHHHHHhcCCceEEecCCc
Confidence 356788888888874 22 112223456678889887655322 233456677779999999994
Q ss_pred -CHHHHHHHHHHHHHHhhccCCcEEEEEEeecCCCCC----CCCCCCCCCChhHHHHH
Q 016909 238 -DALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHT----TSDDSTKYRPVDEIEWW 290 (380)
Q Consensus 238 -D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R~~gHs----~~Dd~~~Yr~~~e~~~~ 290 (380)
..++=.+..++.++++...+ +-||+..-+.+|-- ...+|..|.+++|...+
T Consensus 109 ~~~eENi~~tkevv~~ah~~g--vsVEaElG~~GG~Edg~~~~~~~~~~tdp~ea~~f 164 (286)
T COG0191 109 LPFEENIAITKEVVEFAHAYG--VSVEAELGTLGGEEDGVVLYTDPADLTDPEEALEF 164 (286)
T ss_pred CCHHHHHHHHHHHHHHHHHcC--CcEEEEeccccCccCCcccccchhhhCCHHHHHHH
Confidence 56666677778888776655 56677666776532 22234457777765554
No 253
>COG1303 Uncharacterized protein conserved in archaea [Function unknown]
Probab=56.64 E-value=29 Score=30.69 Aligned_cols=46 Identities=22% Similarity=0.375 Sum_probs=37.3
Q ss_pred cCHHHHHhhcCeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEe
Q 016909 218 DGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALT 266 (380)
Q Consensus 218 ~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t 266 (380)
...+--|+|||..++-++|.+-+.+.+.++..+++ -+||..|+..+
T Consensus 21 THV~LtARAfGA~gil~~~e~De~v~esv~dVv~r---wGG~F~v~~~~ 66 (179)
T COG1303 21 THVALTARAFGADGILLDGEEDEKVVESVEDVVER---WGGPFFVKFGV 66 (179)
T ss_pred hhhhhhhHhhCCceEEEcCcccHHHHHHHHHHHHh---cCCCEEEEEcc
Confidence 34666799999999999998777888888887775 78998887643
No 254
>PRK11032 hypothetical protein; Provisional
Probab=56.11 E-value=39 Score=29.89 Aligned_cols=49 Identities=18% Similarity=0.248 Sum_probs=40.5
Q ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCccc
Q 016909 297 VTRFRKWIESNGWWNGDIESELRSSVRKQILHALQEAEKAEKPPISDLF 345 (380)
Q Consensus 297 i~~~~~~L~~~g~~t~~~~~~i~~~~~~~v~~a~~~a~~~~~p~~~~~~ 345 (380)
|...++++.+.|-+|++|++.+.+-++..+++..+...++..+-.+.++
T Consensus 30 ve~a~~~~~~~~elT~dEl~lv~~ylkRDL~ef~~~~~~~~~~~~~s~~ 78 (160)
T PRK11032 30 VESARKRVDAAGELTRDEVDLITRAVRRDLEEFARSYEESKEEFSDSVF 78 (160)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhccccccccHH
Confidence 6778999999999999999999999999999988876665554444444
No 255
>TIGR02176 pyruv_ox_red pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric. This model represents a single chain form of pyruvate:ferredoxin (or flavodoxin) oxidoreductase. This enzyme may transfer electrons to nitrogenase in nitrogen-fixing species. Portions of this protein are homologous to gamma subunit of the four subunit pyruvate:ferredoxin (flavodoxin) oxidoreductase.
Probab=56.03 E-value=81 Score=36.74 Aligned_cols=112 Identities=15% Similarity=0.099 Sum_probs=68.6
Q ss_pred cHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcceeeecccccCCcCHHHHHhhcC
Q 016909 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 228 (380)
Q Consensus 149 ~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~G 228 (380)
+.+++|++.+ +.++.+++.-.++. .++|.|-.++-..+|+|+++.+-.+.... ..-.....|+ -.++.-|
T Consensus 64 ~~av~GA~~a------Gara~T~TSs~GL~--LM~e~l~~~ag~~~P~Vi~va~R~~~~~~-~~i~~dh~Dv-~~~R~~G 133 (1165)
T TIGR02176 64 AGAVHGALQT------GALTTTFTASQGLL--LMIPNMYKIAGELLPCVFHVSARAIAAHA-LSIFGDHQDV-MAARQTG 133 (1165)
T ss_pred HHHHHhHhhc------CCCEEEecChhHHH--HHHHHHHHHHhccCCEEEEEecCCCCCCC-CccCCCchHH-HHhhcCC
Confidence 5567776654 23454444323332 35788866665688999998876554321 0101011222 3456678
Q ss_pred eeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCCCCC
Q 016909 229 VRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHT 273 (380)
Q Consensus 229 ~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R~~gHs 273 (380)
|.++.. .++.+++...-.|...+.+...|+++-...+|. +|.
T Consensus 134 ~ivl~s--~svQEa~D~al~A~~lAe~~~~Pvi~~~Dgf~t-sh~ 175 (1165)
T TIGR02176 134 FAMLAS--SSVQEVMDLALVAHLATIEARVPFMHFFDGFRT-SHE 175 (1165)
T ss_pred eEEEeC--CCHHHHHHHHHHHHHHHHhcCCCEEEEecCcee-ccc
Confidence 855544 488888888888887777788999998887765 454
No 256
>cd01451 vWA_Magnesium_chelatase Magnesium chelatase: Mg-chelatase catalyses the insertion of Mg into protoporphyrin IX (Proto). In chlorophyll biosynthesis, insertion of Mg2+ into protoporphyrin IX is catalysed by magnesium chelatase in an ATP-dependent reaction. Magnesium chelatase is a three sub-unit (BchI, BchD and BchH) enzyme with a novel arrangement of domains: the C-terminal helical domain is located behind the nucleotide binding site. The BchD domain contains a AAA domain at its N-terminus and a VWA domain at its C-terminus. The VWA domain has been speculated to be involved in mediating protein-protein interactions.
Probab=54.49 E-value=1.3e+02 Score=26.41 Aligned_cols=72 Identities=26% Similarity=0.185 Sum_probs=43.0
Q ss_pred ceeEEEeCccccCcch--H----HHHHHHHHHcCCCEEEEEEcCCcceeeecccccCCcCHHHHHhhcCeeEEEEeCCCH
Q 016909 166 ACAVTYFGDGGTSEGD--F----HAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDA 239 (380)
Q Consensus 166 ~~vv~~~GDG~~~eG~--~----~Eal~~A~~~~Lpvi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~G~~~~~VdG~D~ 239 (380)
+.+++++.||.-+.|. . .+....+...+++++.|... . ......-+.++|+.-|...+.++--+-
T Consensus 99 ~~~ivliTDG~~~~g~~~~~~~~~~~~~~l~~~gi~v~~I~~~-~--------~~~~~~~l~~iA~~tgG~~~~~~d~~~ 169 (178)
T cd01451 99 RPLIVVITDGRANVGPDPTADRALAAARKLRARGISALVIDTE-G--------RPVRRGLAKDLARALGGQYVRLPDLSA 169 (178)
T ss_pred ceEEEEECCCCCCCCCCchhHHHHHHHHHHHhcCCcEEEEeCC-C--------CccCccHHHHHHHHcCCeEEEcCcCCH
Confidence 5789999999877553 1 33344445667777555211 1 001112356788888999999885555
Q ss_pred HHHHHHH
Q 016909 240 LAIYSAV 246 (380)
Q Consensus 240 ~av~~a~ 246 (380)
.++..++
T Consensus 170 ~~~~~~~ 176 (178)
T cd01451 170 DAIASAV 176 (178)
T ss_pred HHHHHHh
Confidence 5554443
No 257
>TIGR00239 2oxo_dh_E1 2-oxoglutarate dehydrogenase, E1 component. The E1 ortholog from Corynebacterium glutamicum is unusual in having an N-terminal extension that resembles the dihydrolipoamide succinyltransferase (E2) component of 2-oxoglutarate dehydrogenase.
Probab=52.32 E-value=96 Score=35.15 Aligned_cols=109 Identities=12% Similarity=0.155 Sum_probs=66.1
Q ss_pred cCccHHHHHHHHHhhhcCCCceeE--EEeCccccC-cchHHHHHHH-HHHcCC--CEEEEEEcCCcceeeecccccCCcC
Q 016909 146 ATQLPHAVGAAYALKMDRKDACAV--TYFGDGGTS-EGDFHAALNF-SAVTEA--PVIFICRNNGWAISTPISDQFRSDG 219 (380)
Q Consensus 146 G~~~p~AvG~A~A~k~~~~~~~vv--~~~GDG~~~-eG~~~Eal~~-A~~~~L--pvi~vv~NN~~~i~~~~~~~~~~~~ 219 (380)
.+.++.++|+|++ +++.++| +-+||=+.. |-.+-+-+|. ++.|+. ++|+.+-. +|...++.+.+.+.+.
T Consensus 657 ~a~~G~~~G~a~~----g~~~l~i~E~qfgDF~~~AQv~~Dq~i~~~~~K~~~~sglv~~~p~-G~~g~g~~hsS~~~E~ 731 (929)
T TIGR00239 657 ESVLGFEYGYATT----SPRTLVIWEAQFGDFANGAQVVIDQFISSGEQKWGQMSGLVMLLPH-GYEGQGPEHSSGRLER 731 (929)
T ss_pred HHHHHHHHhHHhc----CCCCceEEEEeccchhcchHHHHHHHHHHHHHHhcCccCeEEEecC-cCCCCCchhhccCHHH
Confidence 3446667777775 5556544 455554431 1225555666 567765 76665544 4665555444434444
Q ss_pred HHHHHhhcCeeEEEEeCCCHHHHHHHHH-HHHHHhhccCCcEEEEE
Q 016909 220 AVVKGRAYGVRSIRVDGNDALAIYSAVH-AAREMAIGEGRPILIEA 264 (380)
Q Consensus 220 ~~~~a~a~G~~~~~VdG~D~~av~~a~~-~A~~~ar~~~gP~lIe~ 264 (380)
+...+.--||.++... .+.+.+-.++ .|+. ..++|+++--
T Consensus 732 ~lql~~~~gl~Vv~ps--tpad~~~lLrrqa~r---~~~~Pvi~~~ 772 (929)
T TIGR00239 732 FLQLAAEQNMQVCVPT--TPAQVFHILRRQALR---GMRRPLVVMS 772 (929)
T ss_pred HHHHhCCCCCEEEecC--CHHHHHHHHHHHHHh---CCCCCEEEec
Confidence 4444555688888776 8999988888 4663 3478998754
No 258
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=51.07 E-value=49 Score=26.92 Aligned_cols=57 Identities=26% Similarity=0.303 Sum_probs=30.0
Q ss_pred cccCccHHHHHHHHHhhhc-----------------------CCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEE
Q 016909 144 TIATQLPHAVGAAYALKMD-----------------------RKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFIC 200 (380)
Q Consensus 144 ~lG~~~p~AvG~A~A~k~~-----------------------~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv 200 (380)
.+|.|.+..++..++.++. .++..+|++.-.|... ...+.+..|...+.|+|.|.
T Consensus 10 i~G~G~s~~~A~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~is~sg~~~--~~~~~~~~ak~~g~~vi~iT 87 (131)
T PF01380_consen 10 IYGSGSSYGVAQYAALKLQKLGRIVVISYEAGEFFHGPLENLDPDDLVIIISYSGETR--ELIELLRFAKERGAPVILIT 87 (131)
T ss_dssp EEESTHHHHHHHHHHHHHHHHHSSEEEEEEHHHHHTTGGGGCSTTEEEEEEESSSTTH--HHHHHHHHHHHTTSEEEEEE
T ss_pred EEEcchHHHHHHHHHHHHHHhcCcceeccchHHHhhhhcccccccceeEeeeccccch--hhhhhhHHHHhcCCeEEEEe
Confidence 4566666666666666553 2334455555445443 34455555555555555554
Q ss_pred Ec
Q 016909 201 RN 202 (380)
Q Consensus 201 ~N 202 (380)
.+
T Consensus 88 ~~ 89 (131)
T PF01380_consen 88 SN 89 (131)
T ss_dssp SS
T ss_pred CC
Confidence 43
No 259
>PRK13685 hypothetical protein; Provisional
Probab=45.91 E-value=2.2e+02 Score=27.85 Aligned_cols=82 Identities=7% Similarity=0.027 Sum_probs=49.8
Q ss_pred ceeEEEeCccccCcch-------HHHHHHHHHHcCCCEEEEEEcCCcc-eeeeccc---ccCCcCHHHHHhhcCeeEEEE
Q 016909 166 ACAVTYFGDGGTSEGD-------FHAALNFSAVTEAPVIFICRNNGWA-ISTPISD---QFRSDGAVVKGRAYGVRSIRV 234 (380)
Q Consensus 166 ~~vv~~~GDG~~~eG~-------~~Eal~~A~~~~Lpvi~vv~NN~~~-i~~~~~~---~~~~~~~~~~a~a~G~~~~~V 234 (380)
..+|+++.||.-+.|. ..++.+.+...+++|-.|-.-+..+ +...... ......+.+.|+.-|...+.+
T Consensus 194 ~~~IILlTDG~~~~~~~~~~~~~~~~aa~~a~~~gi~i~~Ig~G~~~g~~~~~g~~~~~~~d~~~L~~iA~~tgG~~~~~ 273 (326)
T PRK13685 194 PARIVLMSDGKETVPTNPDNPRGAYTAARTAKDQGVPISTISFGTPYGSVEINGQRQPVPVDDESLKKIAQLSGGEFYTA 273 (326)
T ss_pred CCEEEEEcCCCCCCCCCCCCcccHHHHHHHHHHcCCeEEEEEECCCCCCcCcCCceeeecCCHHHHHHHHHhcCCEEEEc
Confidence 4678899999876542 2456777778888865554433221 1100000 012234668888889888888
Q ss_pred eCCCHHHHHHHHHHH
Q 016909 235 DGNDALAIYSAVHAA 249 (380)
Q Consensus 235 dG~D~~av~~a~~~A 249 (380)
+ |..++.+++++.
T Consensus 274 ~--~~~~L~~if~~I 286 (326)
T PRK13685 274 A--SLEELRAVYATL 286 (326)
T ss_pred C--CHHHHHHHHHHH
Confidence 6 777776666554
No 260
>cd00640 Trp-synth-beta_II Tryptophan synthase beta superfamily (fold type II); this family of pyridoxal phosphate (PLP)-dependent enzymes catalyzes beta-replacement and beta-elimination reactions. This CD corresponds to aminocyclopropane-1-carboxylate deaminase (ACCD), tryptophan synthase beta chain (Trp-synth_B), cystathionine beta-synthase (CBS), O-acetylserine sulfhydrylase (CS), serine dehydratase (Ser-dehyd), threonine dehydratase (Thr-dehyd), diaminopropionate ammonia lyase (DAL), and threonine synthase (Thr-synth). ACCD catalyzes the conversion of 1-aminocyclopropane-1-carboxylate to alpha-ketobutyrate and ammonia. Tryptophan synthase folds into a tetramer, where the beta chain is the catalytic PLP-binding subunit and catalyzes the formation of L-tryptophan from indole and L-serine. CBS is a tetrameric hemeprotein that catalyzes condensation of serine and homocysteine to cystathionine. CS is a homodimer that catalyzes the formation of L-cysteine from O-acetyl-L-serine. Ser-dehy
Probab=43.67 E-value=2e+02 Score=26.50 Aligned_cols=38 Identities=21% Similarity=0.232 Sum_probs=27.7
Q ss_pred HHHHcCCCEEEEEEcCCcceeeecccccCCcCHHHHHhhcCeeEEEEeCC
Q 016909 188 FSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGN 237 (380)
Q Consensus 188 ~A~~~~Lpvi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~G~~~~~VdG~ 237 (380)
.|...++|+++++.++. ...-.+..+.+|..++.+++.
T Consensus 68 ~a~~~g~~~~v~~p~~~------------~~~~~~~~~~~Ga~v~~~~~~ 105 (244)
T cd00640 68 AAARLGLKCTIVMPEGA------------SPEKVAQMRALGAEVVLVPGD 105 (244)
T ss_pred HHHHcCCCEEEEECCCC------------CHHHHHHHHHCCCEEEEECCC
Confidence 45568899998887653 122346788899999999875
No 261
>PRK09404 sucA 2-oxoglutarate dehydrogenase E1 component; Reviewed
Probab=41.86 E-value=1.8e+02 Score=33.13 Aligned_cols=107 Identities=7% Similarity=0.026 Sum_probs=64.3
Q ss_pred cCccHHHHHHHHHhhhcCCCc--eeEEEeCcccc-CcchHHHHHHHH-HHcCC--CEEEEEEcCCcceeeecccccCCcC
Q 016909 146 ATQLPHAVGAAYALKMDRKDA--CAVTYFGDGGT-SEGDFHAALNFS-AVTEA--PVIFICRNNGWAISTPISDQFRSDG 219 (380)
Q Consensus 146 G~~~p~AvG~A~A~k~~~~~~--~vv~~~GDG~~-~eG~~~Eal~~A-~~~~L--pvi~vv~NN~~~i~~~~~~~~~~~~ 219 (380)
.+-++.++|+|++ ++.. ++=+-+||=+. .|-.+-+-++.+ +.|+. ++|+.+-.. |...++.+.+. .
T Consensus 655 ~~~~G~~~G~a~~----g~~~l~i~E~qfgDF~~~AQ~~~Dq~i~~~~~k~~~~sglv~~~p~G-~~g~g~~hsS~---~ 726 (924)
T PRK09404 655 EAVLGFEYGYSTA----EPNTLVIWEAQFGDFANGAQVVIDQFISSGEQKWGRLSGLVMLLPHG-YEGQGPEHSSA---R 726 (924)
T ss_pred HHHHHHHHHHHhc----CCCCceEEEEeccccccchHHHHHHHHHHHHHHhcCccCeEEEecCc-CCCCChhhhcc---C
Confidence 3345667777765 5554 44466666554 223355667775 67765 766665444 55444433332 3
Q ss_pred HHHHHhhc---CeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEE
Q 016909 220 AVVKGRAY---GVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEA 264 (380)
Q Consensus 220 ~~~~a~a~---G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~ 264 (380)
+......+ ||.++... ++.+.+..++.++- |..++|+++--
T Consensus 727 ~E~~l~~~~~~gl~Vv~ps--tpad~~~lLr~q~~--r~~r~Pvv~~~ 770 (924)
T PRK09404 727 LERFLQLCAEDNMQVCNPT--TPAQYFHLLRRQAL--RPFRKPLVVMT 770 (924)
T ss_pred HHHHHHhCCCCCCEEEecC--CHHHHHHHHHHHHh--hCCCCCEEEec
Confidence 44444333 88888776 89888888887643 24458998754
No 262
>PRK00945 acetyl-CoA decarbonylase/synthase complex subunit epsilon; Provisional
Probab=41.82 E-value=1.7e+02 Score=26.23 Aligned_cols=37 Identities=14% Similarity=0.047 Sum_probs=29.3
Q ss_pred CceeEEEeCccccC-cchHHHHHHHHHHcCCCEEEEEE
Q 016909 165 DACAVTYFGDGGTS-EGDFHAALNFSAVTEAPVIFICR 201 (380)
Q Consensus 165 ~~~vv~~~GDG~~~-eG~~~Eal~~A~~~~Lpvi~vv~ 201 (380)
-++.+.++|.|... ....-+...+|..+++|++.-..
T Consensus 34 AKrPlIivG~ga~~~~ea~e~l~elaEkl~iPVvtT~~ 71 (171)
T PRK00945 34 AKRPLLVVGSLLLDDEELLDRAVKIAKKANIPVAATGG 71 (171)
T ss_pred CCCcEEEECcCccccchHHHHHHHHHHHHCCCEEEccc
Confidence 35678889999987 66667788899999999887554
No 263
>TIGR03186 AKGDH_not_PDH alpha-ketoglutarate dehydrogenase. Several bacterial species have a paralog to homodimeric form of the pyruvate dehydrogenase E1 component (see model TIGR00759), often encoded next to L-methionine gamma-lyase gene (mdeA). The member from a strain of Pseudomonas putida was shown to act on alpha-ketobutyrate, which is produced by MdeA.This model serves as an exception model to TIGR00759, as other proteins hitting TIGR00759 should be identified as the pyruvate dehydrogenase E1 component.
Probab=41.19 E-value=1.9e+02 Score=32.74 Aligned_cols=123 Identities=10% Similarity=-0.041 Sum_probs=72.6
Q ss_pred CCcccccccccCccH---HHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCc-ceeeec
Q 016909 136 HNYFTVSSTIATQLP---HAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGW-AISTPI 211 (380)
Q Consensus 136 ~~~~~~~g~lG~~~p---~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~-~i~~~~ 211 (380)
++=+...|+-.+++- +|.|.|++.. +...++++ +.=+.|...-.+|-+..++..++++.+|.-.-+. ......
T Consensus 559 p~R~ie~GIAEqnmv~~~iAAGlA~a~~--G~g~iPf~-~tya~F~~~Ra~Dqir~a~~~~a~v~lvG~~aG~tTlg~eG 635 (889)
T TIGR03186 559 DGQILEEGISEAGAISSWIAAATSYSVH--DLPMLPFY-IYYSMFGFQRIGDLIWAAADQRARGFLIGATSGKTTLGGEG 635 (889)
T ss_pred CCcEEEechhhHHHHHHHHHHHHhhhhc--CCCceEEE-EehHHhHhhhHHHHHHHHhhcCCCcEEEEECCCccCCCCCc
Confidence 333445566666655 5788877742 22223332 2234454456678899998889999999887776 343322
Q ss_pred ccccCCcCHHHHHhhcCeeEEE-EeCCCHHHHHHHHHHHHHHhhcc--CCcEEEEE
Q 016909 212 SDQFRSDGAVVKGRAYGVRSIR-VDGNDALAIYSAVHAAREMAIGE--GRPILIEA 264 (380)
Q Consensus 212 ~~~~~~~~~~~~a~a~G~~~~~-VdG~D~~av~~a~~~A~~~ar~~--~gP~lIe~ 264 (380)
... .++.+.+-.-.+|..+ ++--|..++..+++.+++++-.. ++|+.|-+
T Consensus 636 ~tH---q~~eDial~r~iPn~tv~~PaDa~E~a~iv~~~~~rm~~~~~~gp~YlRl 688 (889)
T TIGR03186 636 LQH---QDGTSHLAASTVPNCRAWDPAFAYEVAVIVDEGMREMLERQRDEFYYLTV 688 (889)
T ss_pred ccc---cchHhHHHHhhCCCCEEEeCCCHHHHHHHHHHHHHHHHhcCCCceEEEEe
Confidence 222 2344444444444444 35558889999999888754443 36776643
No 264
>PRK10490 sensor protein KdpD; Provisional
Probab=39.15 E-value=1.1e+02 Score=34.50 Aligned_cols=74 Identities=9% Similarity=-0.070 Sum_probs=44.9
Q ss_pred ceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEE-EcCCcceeeecccccCCcCHHHHHhhcCeeEEEEeCCCHHH
Q 016909 166 ACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFIC-RNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDALA 241 (380)
Q Consensus 166 ~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv-~NN~~~i~~~~~~~~~~~~~~~~a~a~G~~~~~VdG~D~~a 241 (380)
++.||+-| +..++-.+.-+..+|...+.|+..+. +.............. .....+.|+.+|.++..+.|.|+.+
T Consensus 252 riLV~v~~-~~~~~~lIr~~~rlA~~~~a~~~~l~V~~~~~~~~~~~~~~~-l~~~~~lA~~lGa~~~~~~~~dva~ 326 (895)
T PRK10490 252 AILLCIGH-NTGSEKLVRTAARLAARLGSVWHAVYVETPRLHRLPEKKRRA-ILSALRLAQELGAETATLSDPAEEK 326 (895)
T ss_pred eEEEEECC-CcchHHHHHHHHHHHHhcCCCEEEEEEecCCcCcCCHHHHHH-HHHHHHHHHHcCCEEEEEeCCCHHH
Confidence 34555544 46667778888999999998844433 333221111111111 1123368999999999999998753
No 265
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=38.96 E-value=1.3e+02 Score=24.41 Aligned_cols=19 Identities=21% Similarity=0.293 Sum_probs=11.2
Q ss_pred CHHHHHhhcCeeEEEEeCC
Q 016909 219 GAVVKGRAYGVRSIRVDGN 237 (380)
Q Consensus 219 ~~~~~a~a~G~~~~~VdG~ 237 (380)
...+.++.-|++++.+.++
T Consensus 65 ~~~~~a~~~g~~vi~iT~~ 83 (128)
T cd05014 65 NLLPHLKRRGAPIIAITGN 83 (128)
T ss_pred HHHHHHHHCCCeEEEEeCC
Confidence 3455666666666666543
No 266
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=38.78 E-value=2.2e+02 Score=26.98 Aligned_cols=96 Identities=17% Similarity=0.167 Sum_probs=55.2
Q ss_pred HHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHH-cCCCEEEEEEcCCcceeeecccccCCcCHHHHHhhcCeeEEEE
Q 016909 156 AYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAV-TEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRV 234 (380)
Q Consensus 156 A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~-~~Lpvi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~G~~~~~V 234 (380)
.+|..+...+...+.+.-|-.+..|. .+-+..+.. -++||+. .| |-+. +.-...+..+|..++.+
T Consensus 74 ~~A~~~~~~GA~aisvlte~~~f~g~-~~~l~~v~~~v~iPvl~--kd--fi~~---------~~qi~~a~~~GAD~VlL 139 (260)
T PRK00278 74 EIAKAYEAGGAACLSVLTDERFFQGS-LEYLRAARAAVSLPVLR--KD--FIID---------PYQIYEARAAGADAILL 139 (260)
T ss_pred HHHHHHHhCCCeEEEEecccccCCCC-HHHHHHHHHhcCCCEEe--ee--ecCC---------HHHHHHHHHcCCCEEEE
Confidence 44445555566778888887776565 354555543 5789884 11 2111 11235677778888888
Q ss_pred eCCCHHHHHHHHHHHHHHhhccCCcEEEEEEee
Q 016909 235 DGNDALAIYSAVHAAREMAIGEGRPILIEALTY 267 (380)
Q Consensus 235 dG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~ 267 (380)
++.+... ..+++.+++++.-+.-+++|+.+.
T Consensus 140 i~~~l~~--~~l~~li~~a~~lGl~~lvevh~~ 170 (260)
T PRK00278 140 IVAALDD--EQLKELLDYAHSLGLDVLVEVHDE 170 (260)
T ss_pred EeccCCH--HHHHHHHHHHHHcCCeEEEEeCCH
Confidence 8765211 233444444444567778887654
No 267
>COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]
Probab=38.76 E-value=3.6e+02 Score=27.33 Aligned_cols=64 Identities=17% Similarity=0.278 Sum_probs=40.8
Q ss_pred CceeEEEeCccccCcchHHHHHHHHHHcCC--C--EEEEEEcCCcceeeecccccCCcCHHHHHhhcCeeEEEEeC----
Q 016909 165 DACAVTYFGDGGTSEGDFHAALNFSAVTEA--P--VIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDG---- 236 (380)
Q Consensus 165 ~~~vv~~~GDG~~~eG~~~Eal~~A~~~~L--p--vi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~G~~~~~VdG---- 236 (380)
+..++.+.|-|.+. +| |+..++ | -|.++.|..|+ ..+++.++.||.++..++-
T Consensus 55 ~~~~~ll~gsGt~a----mE----Aav~sl~~pgdkVLv~~nG~FG-----------~R~~~ia~~~g~~v~~~~~~wg~ 115 (383)
T COG0075 55 NGDVVLLSGSGTLA----ME----AAVASLVEPGDKVLVVVNGKFG-----------ERFAEIAERYGAEVVVLEVEWGE 115 (383)
T ss_pred CCcEEEEcCCcHHH----HH----HHHHhccCCCCeEEEEeCChHH-----------HHHHHHHHHhCCceEEEeCCCCC
Confidence 35778888877763 22 233333 3 66666666553 3578888888888887763
Q ss_pred -CCHHHHHHHHH
Q 016909 237 -NDALAIYSAVH 247 (380)
Q Consensus 237 -~D~~av~~a~~ 247 (380)
-|+++|.++++
T Consensus 116 ~v~p~~v~~~L~ 127 (383)
T COG0075 116 AVDPEEVEEALD 127 (383)
T ss_pred CCCHHHHHHHHh
Confidence 36777766665
No 268
>PF07295 DUF1451: Protein of unknown function (DUF1451); InterPro: IPR009912 This family consists of several hypothetical bacterial proteins of around 160 residues in length. Members of this family contain four highly conserved cysteine resides toward the C-terminal region of the protein. The function of this family is unknown.
Probab=37.98 E-value=67 Score=27.97 Aligned_cols=41 Identities=5% Similarity=0.153 Sum_probs=36.1
Q ss_pred ChHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 016909 295 DPVTRFRKWIESNGWWNGDIESELRSSVRKQILHALQEAEK 335 (380)
Q Consensus 295 DPi~~~~~~L~~~g~~t~~~~~~i~~~~~~~v~~a~~~a~~ 335 (380)
+-|...++++.+.|-+|++|++.+.+-++..+.+..+....
T Consensus 18 ~~le~a~e~~~~~~elT~eEl~lv~~ylkRDl~~~a~~~~~ 58 (146)
T PF07295_consen 18 EALEKAKEYLVAAGELTREELALVSAYLKRDLEEFARYYEE 58 (146)
T ss_pred HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44667899999999999999999999999999998887665
No 269
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=37.58 E-value=2.8e+02 Score=29.80 Aligned_cols=95 Identities=22% Similarity=0.183 Sum_probs=60.5
Q ss_pred cccCccHHHHHHHHHhhhc-----CCCceeEEEeCccccCcch---------HHHHHHHHHH---cCCCEEEEEEcCCcc
Q 016909 144 TIATQLPHAVGAAYALKMD-----RKDACAVTYFGDGGTSEGD---------FHAALNFSAV---TEAPVIFICRNNGWA 206 (380)
Q Consensus 144 ~lG~~~p~AvG~A~A~k~~-----~~~~~vv~~~GDG~~~eG~---------~~Eal~~A~~---~~Lpvi~vv~NN~~~ 206 (380)
.-|.+.|++-|+..|.+.. .....+++++-||..+.|. ..+++..|.. .++++++|-.-+.
T Consensus 471 ~~gGgTpL~~gL~~A~~~l~~~~~~~~~~~iVLlTDG~~n~~~~~~~~~~~~~~~~~~~a~~~~~~gi~~~vId~g~~-- 548 (584)
T PRK13406 471 PGGGGTPLAAGLDAAAALALQVRRKGMTPTVVLLTDGRANIARDGTAGRAQAEEDALAAARALRAAGLPALVIDTSPR-- 548 (584)
T ss_pred CCCCCChHHHHHHHHHHHHHHhccCCCceEEEEEeCCCCCCCccccccccchhhHHHHHHHHHHhcCCeEEEEecCCC--
Confidence 3567788888887776431 2235789999999987542 2455555444 4456554422111
Q ss_pred eeeecccccCCcCHHHHHhhcCeeEEEEeCCCHHHHHHHHHHH
Q 016909 207 ISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAA 249 (380)
Q Consensus 207 i~~~~~~~~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~A 249 (380)
......++|+..|...+.++--+...+..+++.+
T Consensus 549 ---------~~~~~~~LA~~~gg~y~~l~~~~a~~~~~~v~~~ 582 (584)
T PRK13406 549 ---------PQPQARALAEAMGARYLPLPRADAGRLSQAVRAA 582 (584)
T ss_pred ---------CcHHHHHHHHhcCCeEEECCCCCHHHHHHHHHhh
Confidence 1123567899999999999877777777766554
No 270
>PRK05772 translation initiation factor IF-2B subunit alpha; Provisional
Probab=37.49 E-value=1.8e+02 Score=29.30 Aligned_cols=117 Identities=16% Similarity=0.020 Sum_probs=59.0
Q ss_pred cccccc--CccHHHHHHHHHhhhcCCCceeEEEeCccc-cCcchHHHHHHHHHHcCCCEEEEEEcCCcceeeecccccCC
Q 016909 141 VSSTIA--TQLPHAVGAAYALKMDRKDACAVTYFGDGG-TSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRS 217 (380)
Q Consensus 141 ~~g~lG--~~~p~AvG~A~A~k~~~~~~~vv~~~GDG~-~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~i~~~~~~~~~~ 217 (380)
++|++. .+.+.|+|.-...+..+..-.|+|. +.. ..||.-. +..-....++|+.+|++|--..+- +....
T Consensus 175 nsg~Lat~~g~gtal~~i~~a~~~gk~f~V~v~--EsRP~~qG~rl-ta~eL~~~GIpvtlI~Dsa~~~~m-~~~~V--- 247 (363)
T PRK05772 175 NAGGLATGTGLGTALAPVKLAKALGMSVSVIAP--ETRPWLQGSRL-TVYELMEEGIKVTLITDTAVGLVM-YKDMV--- 247 (363)
T ss_pred CCcchhhccccccHHHHHHHHHHCCCeEEEEEC--CCCccchhHHH-HHHHHHHCCCCEEEEehhHHHHHH-hhcCC---
Confidence 345553 4556677765555544444444443 433 2456311 111234578999999877543221 00000
Q ss_pred cCHHHHHhhcCeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCCC
Q 016909 218 DGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGH 271 (380)
Q Consensus 218 ~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R~~g 271 (380)
| .--.|.+.+..||.-...+ -+..-|+ .|+..+.|+.+-+-++.+..
T Consensus 248 -d----~VivGAD~I~~NG~v~NKi-GTy~lA~-~Ak~~~vPfyV~ap~~k~d~ 294 (363)
T PRK05772 248 -N----NVMVGADRILRDGHVFNKI-GTFKEAV-IAHELGIPFYALAPTSTFDL 294 (363)
T ss_pred -C----EEEECccEEecCCCEeehh-hhHHHHH-HHHHhCCCEEEEccccccCc
Confidence 0 0114777777777322222 1122222 12346899999988877653
No 271
>cd08325 CARD_CASP1-like Caspase activation and recruitment domain found in Caspase-1 and related proteins. Caspase activation and recruitment domain (CARD) similar to those found in Caspase-1 (CASP1, ICE) and related proteins, including CARD-only proteins such as ICEBERG or CARD18, INCA (CARD17), CARD16 (COP1, PSEUDO-ICE), CARD8 (DACAR, NDPP1, TUCAN), and CARD12 (NLRC4), as well as ICE-like caspases such as CASP12, CASP5 (ICH-3) and CASP4 (TX, ICH-2). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. CASP1 plays a central role in the cellular response to a wide variety of microbial and non-microbial stimuli, being activated by the inflammasome or the pyroptosome. CARD8 binds itself and the initiator caspase-9, interfering with the binding of APAF-1 and suppressing caspase-9 activation. CARD12 is a Nod-like receptor (NLR) that plays an important role in the innate immune response to Gram-negative bacteria. Caspase-4 (CASP4), -5 (CASP5),
Probab=37.00 E-value=61 Score=25.21 Aligned_cols=39 Identities=5% Similarity=-0.038 Sum_probs=30.2
Q ss_pred CChHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 016909 294 QDPVTRFRKWIESNGWWNGDIESELRSSVRKQILHALQE 332 (380)
Q Consensus 294 ~DPi~~~~~~L~~~g~~t~~~~~~i~~~~~~~v~~a~~~ 332 (380)
++-|.-+-..|++.++++++|.+.|..+.....+.|...
T Consensus 15 ~~~i~~llD~Ll~~~Vl~~~E~e~i~~~~~t~~dkar~L 53 (83)
T cd08325 15 KGVINGLLDDLLEKNVLNEEEMEKIKEENNTIMDKARVL 53 (83)
T ss_pred HhhHHHHHHHHHHcCCCCHHHHHHHHhccCCHHHHHHHH
Confidence 566777889999999999999999988754455555443
No 272
>PRK13683 hypothetical protein; Provisional
Probab=36.64 E-value=63 Score=25.50 Aligned_cols=38 Identities=29% Similarity=0.451 Sum_probs=29.3
Q ss_pred eeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCC
Q 016909 229 VRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVG 270 (380)
Q Consensus 229 ~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R~~ 270 (380)
+-+-+-+-.|.+++|.-+..|++ .+.|.+||+.|-+..
T Consensus 15 ~SVQRKe~edA~alYq~I~~am~----sg~P~llELtCek~~ 52 (87)
T PRK13683 15 ISVQRKEAEDAEALYQQIRQAMR----SGNPRLLELTCEKVE 52 (87)
T ss_pred eEEEeccHHHHHHHHHHHHHHHh----cCCCcEEEEEecCcC
Confidence 34444455688999999999986 478999999997743
No 273
>COG0108 RibB 3,4-dihydroxy-2-butanone 4-phosphate synthase [Coenzyme metabolism]
Probab=36.54 E-value=1.2e+02 Score=27.87 Aligned_cols=70 Identities=20% Similarity=0.258 Sum_probs=50.2
Q ss_pred hcCCCceeEEEeCcccc--CcchHHHHHHHHHHcCC-CEEEEEEcCCcceeeecccccCCcCHHHHHhhcCeeEEEEe
Q 016909 161 MDRKDACAVTYFGDGGT--SEGDFHAALNFSAVTEA-PVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVD 235 (380)
Q Consensus 161 ~~~~~~~vv~~~GDG~~--~eG~~~Eal~~A~~~~L-pvi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~G~~~~~Vd 235 (380)
+..|+++.....=||.+ -.|..--++.+|..-+| |.-+||+ +........+.++..+.|+-+|++.+++.
T Consensus 120 f~~PGHVfpL~A~~ggVl~R~GHTEasVdLarlAGl~Pa~VicE-----i~~~dG~mar~~~~~~fa~~h~l~~iti~ 192 (203)
T COG0108 120 FRRPGHVFPLRAKDGGVLERRGHTEAAVDLARLAGLKPAGVICE-----IMNDDGTMARLPELEEFAKEHGLPVITIE 192 (203)
T ss_pred cCCCCCeeeeeeccCCeeccCChHHHHHHHHHHcCCCCcEEEEE-----EeCCCccccChHHHHHHHHHcCCcEEEHH
Confidence 34567777788888876 47888888999999999 7777765 11111122345678889999999999876
No 274
>cd08323 CARD_APAF1 Caspase activation and recruitment domain similar to that found in Apoptotic Protease-Activating Factor 1. Caspase activation and recruitment domain (CARD) similar to that found in apoptotic protease-activating factor 1 (APAF-1), which is an activator of caspase-9. APAF-1 contains WD-40 repeats, a CARD, and an ATPase domain. Upon stimulation, APAF-1, together with caspase-9, forms the heptameric 'apoptosome', which leads to the processing and activation of caspase-9, starting a caspase cascade which leads to apoptosis. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and DED (Death Effect
Probab=36.32 E-value=40 Score=26.60 Aligned_cols=27 Identities=19% Similarity=0.200 Sum_probs=22.6
Q ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHH
Q 016909 297 VTRFRKWIESNGWWNGDIESELRSSVR 323 (380)
Q Consensus 297 i~~~~~~L~~~g~~t~~~~~~i~~~~~ 323 (380)
+..+-.+|+++|++|+++.+.|+.+-.
T Consensus 16 v~~ild~L~~~gvlt~~~~e~I~~~~t 42 (86)
T cd08323 16 TSYIMDHMISDGVLTLDEEEKVKSKAT 42 (86)
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHcCCC
Confidence 445789999999999999999987543
No 275
>KOG1184 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=35.20 E-value=1.2e+02 Score=31.96 Aligned_cols=97 Identities=16% Similarity=0.162 Sum_probs=50.4
Q ss_pred ceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcC---CcceeeecccccCCcCHH---HHHhhcCeeEEEEeCCCH
Q 016909 166 ACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN---GWAISTPISDQFRSDGAV---VKGRAYGVRSIRVDGNDA 239 (380)
Q Consensus 166 ~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN---~~~i~~~~~~~~~~~~~~---~~a~a~G~~~~~VdG~D~ 239 (380)
...|+.+|=|+++- .-++.-|-..++|||+||--= .++-..-.+......|+. +.++..-+...-++ |.
T Consensus 68 ~a~VtTfgVGeLSA---lNGIAGsYAE~vpVihIVG~Pnt~~q~t~~LLHHTLG~gDF~vf~rm~k~vsc~~a~I~--~~ 142 (561)
T KOG1184|consen 68 GACVTTFGVGELSA---LNGIAGAYAENVPVIHIVGVPNTNDQGTQRLLHHTLGNGDFTVFHRMFKKVTCYTAMIN--DI 142 (561)
T ss_pred eEEEEEeccchhhh---hcccchhhhhcCCEEEEECCCCcccccccchheeecCCCchHHHHHHHHhhhhHHhhhc--CH
Confidence 45788889898851 111222334689999998421 111110111112334443 44554444455554 44
Q ss_pred HHHHHHHHHHHHHhhccCCcEEEEEEee
Q 016909 240 LAIYSAVHAAREMAIGEGRPILIEALTY 267 (380)
Q Consensus 240 ~av~~a~~~A~~~ar~~~gP~lIe~~t~ 267 (380)
+.-.+-+.+|++.+-...+|+-|.+-+.
T Consensus 143 e~A~~~ID~aI~~~~~~~rPVYi~iP~n 170 (561)
T KOG1184|consen 143 EDAPEQIDKAIRTALKESKPVYIGVPAN 170 (561)
T ss_pred hhhHHHHHHHHHHHHHhcCCeEEEeecc
Confidence 4444444444444444689999988773
No 276
>PF14399 Transpep_BrtH: NlpC/p60-like transpeptidase
Probab=35.02 E-value=2.2e+02 Score=27.20 Aligned_cols=44 Identities=14% Similarity=0.186 Sum_probs=36.9
Q ss_pred HHHHHhhcCeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEee
Q 016909 220 AVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTY 267 (380)
Q Consensus 220 ~~~~a~a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~ 267 (380)
+...++.+|+++......++++..+.++++++ .+.|++|-+.+|
T Consensus 55 ~~~~~~~lG~~~~~~~~~~~~~~~~~l~~~l~----~g~pv~~~~D~~ 98 (317)
T PF14399_consen 55 EENLLERLGIKYEWREFSSPDEAWEELKEALD----AGRPVIVWVDMY 98 (317)
T ss_pred HHHHHHHCCceEEEEecCCHHHHHHHHHHHHh----CCCceEEEeccc
Confidence 45677889999998778899999999999987 368999988875
No 277
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]
Probab=34.62 E-value=1.2e+02 Score=33.76 Aligned_cols=76 Identities=14% Similarity=0.083 Sum_probs=48.1
Q ss_pred CceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcceeeecccccCCcCHHHHHhhcCeeEEEEeCCCHHH
Q 016909 165 DACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDALA 241 (380)
Q Consensus 165 ~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~G~~~~~VdG~D~~a 241 (380)
+++.||+-|+.. ++..+-.+..+|..++.|...|...+.-....+...........++|+.+|...+++.|.|+..
T Consensus 249 e~ilvcI~~~~~-~e~liR~a~RlA~~~~a~~~av~v~~~~~~~~~~~~~~~l~~~~~Lae~lGae~~~l~~~dv~~ 324 (890)
T COG2205 249 ERILVCISGSPG-SEKLIRRAARLASRLHAKWTAVYVETPELHRLSEKEARRLHENLRLAEELGAEIVTLYGGDVAK 324 (890)
T ss_pred ceEEEEECCCCc-hHHHHHHHHHHHHHhCCCeEEEEEeccccccccHHHHHHHHHHHHHHHHhCCeEEEEeCCcHHH
Confidence 567777766654 4567889999999999985555333321111111111112234578999999999999988643
No 278
>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=33.60 E-value=4.5e+02 Score=25.44 Aligned_cols=113 Identities=15% Similarity=0.104 Sum_probs=73.1
Q ss_pred CceeEEEeCccccCcchH---HH-HHHHHHHcCCCEEEEEEcCCcceeeecccccCCcCHHHHHhhcCeeEEEEeCC--C
Q 016909 165 DACAVTYFGDGGTSEGDF---HA-ALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGN--D 238 (380)
Q Consensus 165 ~~~vv~~~GDG~~~eG~~---~E-al~~A~~~~Lpvi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~G~~~~~VdG~--D 238 (380)
+.++|.-+..+.+..... .. ...+|...+.||.+=.|--. ..+...+|-..|+.++-+||. +
T Consensus 42 ~sPvIiq~~~~~~~~~g~~~~~~~~~~~A~~~~VPV~lHLDHg~------------~~e~i~~Ai~~GftSVM~DgS~l~ 109 (284)
T PRK09195 42 HSPVIIAGTPGTFSYAGTEYLLAIVSAAAKQYHHPLALHLDHHE------------KFDDIAQKVRSGVRSVMIDGSHLP 109 (284)
T ss_pred CCCEEEEcChhHHhhCCHHHHHHHHHHHHHHCCCCEEEECCCCC------------CHHHHHHHHHcCCCEEEeCCCCCC
Confidence 467888888888742222 11 22345567789765544221 124566777779999999994 5
Q ss_pred HHHHHHHHHHHHHHhhccCCcEEEEEEeecCCCCCCC----CCCCCCCChhHHHHHH
Q 016909 239 ALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTS----DDSTKYRPVDEIEWWR 291 (380)
Q Consensus 239 ~~av~~a~~~A~~~ar~~~gP~lIe~~t~R~~gHs~~----Dd~~~Yr~~~e~~~~~ 291 (380)
.++=.+..++.+++|+.. =+-||+-.-+.+|-... ++...|.+++|.+++-
T Consensus 110 ~eeNi~~T~~vv~~Ah~~--gv~VEaElG~vgg~e~~~~~~~~~~~~T~peea~~Fv 164 (284)
T PRK09195 110 FAQNISLVKEVVDFCHRF--DVSVEAELGRLGGQEDDLQVDEADALYTDPAQAREFV 164 (284)
T ss_pred HHHHHHHHHHHHHHHHHc--CCEEEEEEecccCcccCcccccccccCCCHHHHHHHH
Confidence 666667777888887664 36778887777643221 1234599999988774
No 279
>smart00115 CASc Caspase, interleukin-1 beta converting enzyme (ICE) homologues. Cysteine aspartases that mediate programmed cell death (apoptosis). Caspases are synthesised as zymogens and activated by proteolysis of the peptide backbone adjacent to an aspartate. The resulting two subunits associate to form an (alpha)2(beta)2-tetramer which is the active enzyme. Activation of caspases can be mediated by other caspase homologues.
Probab=32.90 E-value=1.4e+02 Score=27.83 Aligned_cols=69 Identities=9% Similarity=0.036 Sum_probs=44.7
Q ss_pred CEEEEEEcCCcceeeeccccc--CCcCHHHHHhhcCeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEE
Q 016909 195 PVIFICRNNGWAISTPISDQF--RSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEA 264 (380)
Q Consensus 195 pvi~vv~NN~~~i~~~~~~~~--~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~ 264 (380)
.+.+||.|..|.-. +..... ....+.+.++.+|+.+....--+..++.+++++..+.....+..+++-+
T Consensus 9 g~alII~n~~f~~~-~~r~g~~~D~~~l~~~f~~lgF~V~~~~dlt~~em~~~l~~~~~~~~~~~~d~~v~~ 79 (241)
T smart00115 9 GLALIINNENFHSL-PRRNGTDVDAENLTELFQSLGYEVHVKNNLTAEEMLEELKEFAERPEHSDSDSFVCV 79 (241)
T ss_pred cEEEEEECccCCCC-cCCCCcHHHHHHHHHHHHHCCCEEEEecCCCHHHHHHHHHHHHhccccCCCCEEEEE
Confidence 47788888887521 111111 1235778889999999988777888999999887653222345566655
No 280
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=32.47 E-value=49 Score=25.91 Aligned_cols=25 Identities=16% Similarity=0.254 Sum_probs=21.2
Q ss_pred HHHHHHHHHCCCCCHHHHHHHHHHH
Q 016909 298 TRFRKWIESNGWWNGDIESELRSSV 322 (380)
Q Consensus 298 ~~~~~~L~~~g~~t~~~~~~i~~~~ 322 (380)
.....+|+++||+|.++.+.|++.-
T Consensus 19 ~~v~~~L~~~~Vlt~~~~e~I~~~~ 43 (84)
T cd08326 19 KYLWDHLLSRGVFTPDMIEEIQAAG 43 (84)
T ss_pred HHHHHHHHhcCCCCHHHHHHHHcCC
Confidence 4478999999999999999988643
No 281
>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=32.19 E-value=1.8e+02 Score=23.49 Aligned_cols=18 Identities=11% Similarity=0.296 Sum_probs=10.7
Q ss_pred HHHHHhhcCeeEEEEeCC
Q 016909 220 AVVKGRAYGVRSIRVDGN 237 (380)
Q Consensus 220 ~~~~a~a~G~~~~~VdG~ 237 (380)
..+.++..|.+++.+.++
T Consensus 65 ~~~~a~~~g~~vi~iT~~ 82 (126)
T cd05008 65 ALRLAKEKGAKTVAITNV 82 (126)
T ss_pred HHHHHHHcCCeEEEEECC
Confidence 455666666666665543
No 282
>PRK06381 threonine synthase; Validated
Probab=31.42 E-value=3.7e+02 Score=26.01 Aligned_cols=57 Identities=23% Similarity=0.239 Sum_probs=34.8
Q ss_pred HHHHcCCCEEEEEEcCCcceeeecccccCCcCHHHHHhhcCeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEE
Q 016909 188 FSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPIL 261 (380)
Q Consensus 188 ~A~~~~Lpvi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~l 261 (380)
.|+..++|+++++..+. ...-.+..++||.+++.+++. .. .+...+.+.++. ++..+
T Consensus 81 ~aa~~G~~~~ivvp~~~------------~~~~~~~l~~~GA~V~~~~~~-~~---~~~~~a~~~~~~-~~~~~ 137 (319)
T PRK06381 81 FARLYGLKAVIFIPRSY------------SNSRVKEMEKYGAEIIYVDGK-YE---EAVERSRKFAKE-NGIYD 137 (319)
T ss_pred HHHHcCCcEEEEECCCC------------CHHHHHHHHHcCCEEEEcCCC-HH---HHHHHHHHHHHH-cCcEe
Confidence 35678999888876431 122346789999999999874 32 333444444443 34433
No 283
>cd08327 CARD_RAIDD Caspase activation and recruitment domain of RIP-associated ICH-1 homologous protein with a death domain. Caspase activation and recruitment domain (CARD) of RAIDD (RIP-associated ICH-1 homologous protein with a death domain), also known as CRADD (Caspase and RIP adaptor). RAIDD is an adaptor protein that together with the p53-inducible protein PIDD and caspase-2, forms the PIDDosome complex, which is required for caspase-2 activation and plays a role in mediating stress-induced apoptosis. RAIDD contains an N-terminal CARD, which interacts with the caspase-2 CARD, and a C-terminal Death domain (DD), which interacts with the DD of PIDD. In general, CARDs are DDs associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodime
Probab=31.23 E-value=51 Score=26.46 Aligned_cols=24 Identities=13% Similarity=0.167 Sum_probs=20.5
Q ss_pred HHHHHHHHCCCCCHHHHHHHHHHH
Q 016909 299 RFRKWIESNGWWNGDIESELRSSV 322 (380)
Q Consensus 299 ~~~~~L~~~g~~t~~~~~~i~~~~ 322 (380)
.+..+|.++||+|+++.+.|+++-
T Consensus 25 ~v~~~L~~~gIlT~~~~e~I~a~~ 48 (94)
T cd08327 25 LVIQYLYQEGILTESHVEEIESQT 48 (94)
T ss_pred HHHHHHHhCCCCCHHHHHHHHccC
Confidence 467899999999999999998643
No 284
>cd01987 USP_OKCHK USP domain is located between the N-terminal sensor domain and C-terminal catalytic domain of this Osmosensitive K+ channel histidine kinase family. The family of KdpD sensor kinase proteins regulates the kdpFABC operon responsible for potassium transport. The USP domain is homologous to the universal stress protein Usp Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity.
Probab=30.70 E-value=2.4e+02 Score=22.43 Aligned_cols=63 Identities=14% Similarity=0.158 Sum_probs=31.6
Q ss_pred cCcchHHHHHHHHHHcCCCEEEEEEcCCcceeeecccccCCcCHHHHHhhcCeeEEEEeCCCH
Q 016909 177 TSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDA 239 (380)
Q Consensus 177 ~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~G~~~~~VdG~D~ 239 (380)
.++-.+..+.++|..++-++.++...+.-..............+.+.++..+.+...+.+.++
T Consensus 11 ~s~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 73 (124)
T cd01987 11 NAERLIRRAARLADRLKAPWYVVYVETPRLNRLSEAERRRLAEALRLAEELGAEVVTLPGDDV 73 (124)
T ss_pred chHHHHHHHHHHHHHhCCCEEEEEEecCccccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCcH
Confidence 334445566677777777644443333211000000011112345667778888877777665
No 285
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=30.49 E-value=5.1e+02 Score=25.09 Aligned_cols=113 Identities=12% Similarity=0.088 Sum_probs=68.0
Q ss_pred CceeEEEeCccccCc-c--hHHH-HHHHHHHcCCCEEEEEEcCCcceeeecccccCCcCHHHHHhhcCeeEEEEeCC--C
Q 016909 165 DACAVTYFGDGGTSE-G--DFHA-ALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGN--D 238 (380)
Q Consensus 165 ~~~vv~~~GDG~~~e-G--~~~E-al~~A~~~~Lpvi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~G~~~~~VdG~--D 238 (380)
+.++|.-+..+.+.. | .+.. ...+|...+.||.+-.+-- ...+...+|-..|+.++-+||. +
T Consensus 42 ~sPvIl~~~~~~~~~~g~~~~~~~~~~~A~~~~vPV~lHLDH~------------~~~e~i~~Ai~~GftSVM~DgS~l~ 109 (283)
T PRK07998 42 GLPNFIQIAPTNAQLSGYDYIYEIVKRHADKMDVPVSLHLDHG------------KTFEDVKQAVRAGFTSVMIDGAALP 109 (283)
T ss_pred CCCEEEECcHhHHhhCCHHHHHHHHHHHHHHCCCCEEEECcCC------------CCHHHHHHHHHcCCCEEEEeCCCCC
Confidence 456666666666532 2 1121 2234566788977665521 1123445666779999999994 4
Q ss_pred HHHHHHHHHHHHHHhhccCCcEEEEEEeecCCCCCCC--CCCCCCCChhHHHHHH
Q 016909 239 ALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTS--DDSTKYRPVDEIEWWR 291 (380)
Q Consensus 239 ~~av~~a~~~A~~~ar~~~gP~lIe~~t~R~~gHs~~--Dd~~~Yr~~~e~~~~~ 291 (380)
.++=.+..++.++.|+..+-| ||+..-+.+|-... ++...|.++++..++-
T Consensus 110 ~eeNi~~T~~vve~Ah~~gv~--VEaElG~vgg~ed~~~~~~~~~T~pe~a~~Fv 162 (283)
T PRK07998 110 FEENIAFTKEAVDFAKSYGVP--VEAELGAILGKEDDHVSEADCKTEPEKVKDFV 162 (283)
T ss_pred HHHHHHHHHHHHHHHHHcCCE--EEEEeccCCCccccccccccccCCHHHHHHHH
Confidence 555556677777877775544 67766666654321 1134588998887764
No 286
>cd08330 CARD_ASC_NALP1 Caspase activation and recruitment domain found in Human ASC, NALP1, and similar proteins. Caspase activation and recruitment domain (CARD) similar to those found in human ASC (Apoptosis-associated speck-like protein containing a CARD) and NALP1 (CARD7, NLRP1). ASC, an adaptor molecule, and NALP1, a member of the Nod-like receptor (NLR) family, are involved in the assembly of the 'inflammasome', a multiprotein platform, which is responsible for caspase-1 activation and regulation of IL-1beta maturation. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and DED (Death Effector Domain). They se
Probab=29.88 E-value=60 Score=25.19 Aligned_cols=27 Identities=15% Similarity=0.074 Sum_probs=22.7
Q ss_pred hHHHHHHHHHHCCCCCHHHHHHHHHHH
Q 016909 296 PVTRFRKWIESNGWWNGDIESELRSSV 322 (380)
Q Consensus 296 Pi~~~~~~L~~~g~~t~~~~~~i~~~~ 322 (380)
.+..+-..|.++|++|+++.+.|+++-
T Consensus 16 ~v~~ilD~L~~~~Vit~e~~~~I~a~~ 42 (82)
T cd08330 16 NVDPILDKLHGKKVITQEQYSEVRAEK 42 (82)
T ss_pred hHHHHHHHHHHCCCCCHHHHHHHHcCC
Confidence 456677899999999999999998754
No 287
>COG2515 Acd 1-aminocyclopropane-1-carboxylate deaminase [Amino acid transport and metabolism]
Probab=29.86 E-value=3.3e+02 Score=26.84 Aligned_cols=108 Identities=20% Similarity=0.238 Sum_probs=64.4
Q ss_pred ceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcceeeecccccCCcCHHHHHhhcCeeEEEEe-CCCHHHHHH
Q 016909 166 ACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVD-GNDALAIYS 244 (380)
Q Consensus 166 ~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~G~~~~~Vd-G~D~~av~~ 244 (380)
.-+++.+ |+.|...+......|++.+|..|++++|-- + .-..+.++ -+..-+|....-|| |.|+. +..
T Consensus 64 ~dTlvT~--GgiQSNh~r~tAavA~~lGl~~v~ile~~~-~------~y~~ngn~-Ll~~l~G~~~~~~~~~~d~~-~~~ 132 (323)
T COG2515 64 ADTLVTY--GGIQSNHVRQTAAVAAKLGLKCVLILENIE-A------NYLLNGNL-LLSKLMGAEVRAVDAGTDIG-INA 132 (323)
T ss_pred CcEEEEe--cccchhHHHHHHHHHHhcCCcEEEEEeccc-c------ccccccch-hhhhhcCceEEEecCCCChh-hch
Confidence 3355555 577767777878888899999999998754 1 00111222 34556899999987 56773 223
Q ss_pred HHHHHHHHh-hccCCcEEEEEEeecCCC-CCCCCCCCCC-CChhHHHHHH
Q 016909 245 AVHAAREMA-IGEGRPILIEALTYRVGH-HTTSDDSTKY-RPVDEIEWWR 291 (380)
Q Consensus 245 a~~~A~~~a-r~~~gP~lIe~~t~R~~g-Hs~~Dd~~~Y-r~~~e~~~~~ 291 (380)
-++...+.+ +++++|.+|- -+| |+.+ .-.| |-..|+..|.
T Consensus 133 ~~~~~~e~~~~~g~kpyvIp-----~GG~~~~g--~lGyv~~a~Ei~~Q~ 175 (323)
T COG2515 133 SAEELAEEVRKQGGKPYVIP-----EGGSSPLG--ALGYVRLALEIAEQA 175 (323)
T ss_pred hhHHHHHHHHhcCCCCcEec-----cCCcCccc--cccHHHHHHHHHHHH
Confidence 333333222 2478898884 455 3222 1345 5667777775
No 288
>cd05009 SIS_GlmS_GlmD_2 SIS (Sugar ISomerase) domain repeat 2 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=29.37 E-value=1.4e+02 Score=24.87 Aligned_cols=38 Identities=13% Similarity=0.128 Sum_probs=19.7
Q ss_pred CceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcC
Q 016909 165 DACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN 203 (380)
Q Consensus 165 ~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN 203 (380)
+..++.+.++|+..+ ...+.+..+...+.|+|.|..++
T Consensus 62 ~~~vi~is~~g~t~~-~~~~~~~~~~~~~~~vi~it~~~ 99 (153)
T cd05009 62 GTPVIFLAPEDRLEE-KLESLIKEVKARGAKVIVITDDG 99 (153)
T ss_pred CCcEEEEecCChhHH-HHHHHHHHHHHcCCEEEEEecCC
Confidence 445566665554321 13445555555566666665443
No 289
>PF06945 DUF1289: Protein of unknown function (DUF1289); InterPro: IPR010710 This family consists of a number of hypothetical bacterial proteins. The aligned region spans around 56 residues and contains 4 highly conserved cysteine residues towards the N terminus. The function of this family is unknown.
Probab=29.15 E-value=87 Score=22.02 Aligned_cols=12 Identities=42% Similarity=0.792 Sum_probs=10.7
Q ss_pred CCChhHHHHHHh
Q 016909 281 YRPVDEIEWWRT 292 (380)
Q Consensus 281 Yr~~~e~~~~~~ 292 (380)
||+.+|+..|..
T Consensus 21 ~RT~dEI~~W~~ 32 (51)
T PF06945_consen 21 GRTLDEIRDWKS 32 (51)
T ss_pred CCcHHHHHHHhh
Confidence 799999999973
No 290
>PF06833 MdcE: Malonate decarboxylase gamma subunit (MdcE); InterPro: IPR009648 This family consists of several bacterial malonate decarboxylase gamma subunit proteins. Malonate decarboxylase of Klebsiella pneumoniae consists of four different subunits and catalyses the conversion of malonate plus H+ to acetate and CO2. The catalysis proceeds via acetyl and malonyl thioester residues with the phosphribosyl-dephospho-CoA prosthetic group of the acyl carrier protein (ACP) subunit. MdcD and E together probably function as malonyl-S-ACP decarboxylase []. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase, while the gamma subunit appears either to mediate subunit interaction or to act as a co-decarboxylase with the beta subunit. The beta and gamma subunits exhibit some local sequence similarity.
Probab=29.12 E-value=4e+02 Score=25.16 Aligned_cols=76 Identities=16% Similarity=0.245 Sum_probs=44.6
Q ss_pred CceeEEEeCccccCcchHHHHHHHHHH--------cCCCEEEEEEcCCcceeeecccccCCcCHHHHHhhcCeeEEEEeC
Q 016909 165 DACAVTYFGDGGTSEGDFHAALNFSAV--------TEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDG 236 (380)
Q Consensus 165 ~~~vv~~~GDG~~~eG~~~Eal~~A~~--------~~Lpvi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~G~~~~~VdG 236 (380)
+...++++||-.-.+=.+-|++.+|.. .|-|+|+|||.-+.+.+ .+=+.+|++
T Consensus 28 ~~~~iaVvg~~~~~~vGl~ea~~lA~~V~~~i~~~~krpIv~lVD~~sQa~g-------------rreEllGi~------ 88 (234)
T PF06833_consen 28 DGRFIAVVGDANHGEVGLEEAWALAKAVLDTIRSGPKRPIVALVDVPSQAYG-------------RREELLGIN------ 88 (234)
T ss_pred CCcEEEEEecCCCCcccHHHHHHHHHHHHHHHhcCCCCCEEEEEeCCccccc-------------hHHHHhhHH------
Confidence 456777777766444346677777643 34599999986543332 334445542
Q ss_pred CCHHHHHHHHHHHHHHhhccCCcEEEE
Q 016909 237 NDALAIYSAVHAAREMAIGEGRPILIE 263 (380)
Q Consensus 237 ~D~~av~~a~~~A~~~ar~~~gP~lIe 263 (380)
.-...+..+...+|..+-|++=-
T Consensus 89 ----~alAhla~a~a~AR~~GHpvI~L 111 (234)
T PF06833_consen 89 ----QALAHLAKAYALARLAGHPVIGL 111 (234)
T ss_pred ----HHHHHHHHHHHHHHHcCCCeEEE
Confidence 22344555666666667777543
No 291
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=29.09 E-value=2.7e+02 Score=27.00 Aligned_cols=54 Identities=6% Similarity=-0.122 Sum_probs=37.5
Q ss_pred CCceeEEEeCccccCcchHHHHHHHHHHcC-CC--EEEEEEcCCcceeeecccccCCcCHHHHHhhcCeeEEEEeC
Q 016909 164 KDACAVTYFGDGGTSEGDFHAALNFSAVTE-AP--VIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDG 236 (380)
Q Consensus 164 ~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~-Lp--vi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~G~~~~~VdG 236 (380)
+.+++|...|.|+. .+++-.+...+ || ++.|+.||. +..++|+.+|+|++.++-
T Consensus 93 ~~kiavl~Sg~g~n-----l~al~~~~~~~~l~~~i~~visn~~--------------~~~~~A~~~gIp~~~~~~ 149 (289)
T PRK13010 93 RPKVVIMVSKFDHC-----LNDLLYRWRMGELDMDIVGIISNHP--------------DLQPLAVQHDIPFHHLPV 149 (289)
T ss_pred CeEEEEEEeCCCcc-----HHHHHHHHHCCCCCcEEEEEEECCh--------------hHHHHHHHcCCCEEEeCC
Confidence 34567777776655 45666666543 44 888888773 345889999999998763
No 292
>PF10925 DUF2680: Protein of unknown function (DUF2680); InterPro: IPR024485 Members in this family of proteins are annotated as YckD however currently no function is known.
Probab=28.93 E-value=1.9e+02 Score=21.12 Aligned_cols=30 Identities=3% Similarity=-0.003 Sum_probs=24.0
Q ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
Q 016909 300 FRKWIESNGWWNGDIESELRSSVRKQILHA 329 (380)
Q Consensus 300 ~~~~L~~~g~~t~~~~~~i~~~~~~~v~~a 329 (380)
+-...++.|.+|.++-+.|.+.+....+..
T Consensus 23 ~idk~Ve~G~iTqeqAd~ik~~id~~~~~~ 52 (59)
T PF10925_consen 23 IIDKYVEAGVITQEQADAIKKHIDQRQEYM 52 (59)
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence 344567889999999999999888876654
No 293
>PRK05647 purN phosphoribosylglycinamide formyltransferase; Reviewed
Probab=28.81 E-value=3.1e+02 Score=24.96 Aligned_cols=54 Identities=15% Similarity=0.210 Sum_probs=33.5
Q ss_pred ceeEEEeCccccCcchHHHHHHHHH-HcCCC--EEEEEEcCCcceeeecccccCCcCHHHHHhhcCeeEEEEeC
Q 016909 166 ACAVTYFGDGGTSEGDFHAALNFSA-VTEAP--VIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDG 236 (380)
Q Consensus 166 ~~vv~~~GDG~~~eG~~~Eal~~A~-~~~Lp--vi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~G~~~~~VdG 236 (380)
+++|.+.|+|+..+ ++--+. .-.++ +++|+.|+.- ....++|+..|+|++.++-
T Consensus 3 ki~vl~sg~gs~~~-----~ll~~~~~~~~~~~I~~vvs~~~~------------~~~~~~a~~~gIp~~~~~~ 59 (200)
T PRK05647 3 RIVVLASGNGSNLQ-----AIIDACAAGQLPAEIVAVISDRPD------------AYGLERAEAAGIPTFVLDH 59 (200)
T ss_pred eEEEEEcCCChhHH-----HHHHHHHcCCCCcEEEEEEecCcc------------chHHHHHHHcCCCEEEECc
Confidence 47888889988753 232222 22343 6666666531 1245788999999998763
No 294
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=28.56 E-value=3.3e+02 Score=22.35 Aligned_cols=82 Identities=11% Similarity=0.033 Sum_probs=45.2
Q ss_pred CcchHHHHHHHHHHcCCCEEEEEEcC-CcceeeecccccCCcCHHHHHhhcCeeEEEEeCCCHHHHHHHHHHHHHHhhcc
Q 016909 178 SEGDFHAALNFSAVTEAPVIFICRNN-GWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGE 256 (380)
Q Consensus 178 ~eG~~~Eal~~A~~~~Lpvi~vv~NN-~~~i~~~~~~~~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~ 256 (380)
-+|.+-||++.|....-++++.+-+. .-.-...-......+.+.+.... .+-.+.+|..+.+. ++ +...+ +..
T Consensus 2 f~gs~~eAl~~ak~e~K~llVylhs~~~~~~~~fc~~~l~~~~v~~~ln~-~fv~w~~dv~~~eg-~~-la~~l---~~~ 75 (116)
T cd02991 2 YQGTYSQALNDAKQELRFLLVYLHGDDHQDTDEFCRNTLCAPEVIEYINT-RMLFWACSVAKPEG-YR-VSQAL---RER 75 (116)
T ss_pred CcCcHHHHHHHHHhhCCEEEEEEeCCCCccHHHHHHHHcCCHHHHHHHHc-CEEEEEEecCChHH-HH-HHHHh---CCC
Confidence 36788899999976655544444333 21111122334455666666543 56677777766654 11 22222 234
Q ss_pred CCcEEEEEE
Q 016909 257 GRPILIEAL 265 (380)
Q Consensus 257 ~gP~lIe~~ 265 (380)
.=|+++-+.
T Consensus 76 ~~P~~~~l~ 84 (116)
T cd02991 76 TYPFLAMIM 84 (116)
T ss_pred CCCEEEEEE
Confidence 669887764
No 295
>COG1424 BioW Pimeloyl-CoA synthetase [Coenzyme metabolism]
Probab=28.19 E-value=2.7e+02 Score=25.63 Aligned_cols=76 Identities=29% Similarity=0.326 Sum_probs=46.4
Q ss_pred HHHHHHHHHHcCC-C-EEE-EEEcCCcceee-ecc----cccCCcCHHHHHhhcCeeEEEEeCC-CHHHHHHHHHHHHHH
Q 016909 182 FHAALNFSAVTEA-P-VIF-ICRNNGWAIST-PIS----DQFRSDGAVVKGRAYGVRSIRVDGN-DALAIYSAVHAAREM 252 (380)
Q Consensus 182 ~~Eal~~A~~~~L-p-vi~-vv~NN~~~i~~-~~~----~~~~~~~~~~~a~a~G~~~~~VdG~-D~~av~~a~~~A~~~ 252 (380)
+-+||.+|+.-++ | |+. +|..+.-...| ... .-....++.....-+|..++.||+. |+......+
T Consensus 154 ~~dAlAiaskv~~hp~VvaELC~SDd~dY~TGYvagkkiGY~Rit~lKe~gt~~GgRVfFVd~~~dln~yI~~L------ 227 (239)
T COG1424 154 TVDALAIASKVNAHPGVVAELCWSDDPDYTTGYVAGKKIGYHRITDLKEVGTRYGGRVFFVDDCIDLNHYISFL------ 227 (239)
T ss_pred HHHHHHHHHhhccCcceeEEEeecCCCcceeeeeecceeeeEEeecccccCCccCcEEEEEcCcccHHHHHHHH------
Confidence 5578888887766 6 443 56544322111 111 1112235666777899999999975 776665544
Q ss_pred hhccCCcEEEEEEe
Q 016909 253 AIGEGRPILIEALT 266 (380)
Q Consensus 253 ar~~~gP~lIe~~t 266 (380)
..+|.+|+..|
T Consensus 228 ---e~kp~lIe~e~ 238 (239)
T COG1424 228 ---ESKPKLIEYET 238 (239)
T ss_pred ---hcCCEEEEEec
Confidence 25899998765
No 296
>PF10415 FumaraseC_C: Fumarase C C-terminus; InterPro: IPR018951 Fumarase C catalyses the stereo-specific interconversion of fumarate to L-malate as part of the Krebs cycle. The full-length protein forms a tetramer with visible globular shape. FumaraseC_C is the C-terminal 65 residues referred to as domain 3. The core of the molecule consists of a bundle of 20 alpha-helices from the five-helix bundle of domain 2. The projections from the core of the tetramer are generated from domains 1 and 3 of each subunit []. This entry does not appear to be part of either the active site or the activation site but is helical in structure forming a little bundle. ; GO: 0016829 lyase activity, 0006099 tricarboxylic acid cycle; PDB: 3RRP_A 3OCE_D 3OCF_D 3E04_B 3GTD_A 3R6V_F 3R6Q_F 1J3U_B 1FUR_A 1YFE_A ....
Probab=28.16 E-value=66 Score=23.07 Aligned_cols=19 Identities=21% Similarity=0.265 Sum_probs=14.9
Q ss_pred HHHHHHHCCCCCHHHHHHH
Q 016909 300 FRKWIESNGWWNGDIESEL 318 (380)
Q Consensus 300 ~~~~L~~~g~~t~~~~~~i 318 (380)
.++-++++|++|+++++++
T Consensus 28 vre~v~~~g~lt~ee~d~l 46 (55)
T PF10415_consen 28 VREVVLEEGLLTEEELDEL 46 (55)
T ss_dssp HHHHHHHTTSS-HHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHH
Confidence 5667778999999999876
No 297
>PLN02331 phosphoribosylglycinamide formyltransferase
Probab=28.10 E-value=4.7e+02 Score=23.96 Aligned_cols=53 Identities=19% Similarity=0.235 Sum_probs=34.3
Q ss_pred eeEEEeCccccCcchHHHHHHHHHHcC-CC--EEEEEEcCCcceeeecccccCCcCHHHHHhhcCeeEEEEeC
Q 016909 167 CAVTYFGDGGTSEGDFHAALNFSAVTE-AP--VIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDG 236 (380)
Q Consensus 167 ~vv~~~GDG~~~eG~~~Eal~~A~~~~-Lp--vi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~G~~~~~VdG 236 (380)
++|.+.|-|+- .+++--+...+ +| +++|+.||..+ ...++|+.+|++++.++-
T Consensus 2 i~vl~Sg~Gsn-----~~al~~~~~~~~l~~~i~~visn~~~~------------~~~~~A~~~gIp~~~~~~ 57 (207)
T PLN02331 2 LAVFVSGGGSN-----FRAIHDACLDGRVNGDVVVVVTNKPGC------------GGAEYARENGIPVLVYPK 57 (207)
T ss_pred EEEEEeCCChh-----HHHHHHHHHcCCCCeEEEEEEEeCCCC------------hHHHHHHHhCCCEEEecc
Confidence 56677776654 45565555433 44 77788887521 235788899999987654
No 298
>cd08329 CARD_BIRC2_BIRC3 Caspase activation and recruitment domain found in Baculoviral IAP repeat-containing proteins, BIRC2 (c-IAP1) and BIRC3 (c-IAP2). Caspase activation and recruitment domain (CARD) similar to those found in Baculoviral IAP repeat (BIR)-containing protein 2 (BIRC2) or cellular Inhibitor of Apoptosis Protein 1 (c-IAP1), and BIRC3 (or c-IAP2). IAPs are anti-apoptotic proteins that contain at least one BIR domain. Most IAPs also contain a C-terminal RING domain. In addition, both BIRC2 and BIRC3 contain a CARD. BIRC2 and BIRC3, through their binding with TRAF (TNF receptor-associated factor) 2, are recruited to TNFR-1/2 signaling complexes, where they regulate caspase-8 activity. They also play important roles in pro-survival NF-kB signaling pathways. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation and host-defense mechanisms. DDs are protein-protein interac
Probab=28.04 E-value=75 Score=25.37 Aligned_cols=36 Identities=11% Similarity=0.014 Sum_probs=26.8
Q ss_pred ChHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
Q 016909 295 DPVTRFRKWIESNGWWNGDIESELRSSVRKQILHALQ 331 (380)
Q Consensus 295 DPi~~~~~~L~~~g~~t~~~~~~i~~~~~~~v~~a~~ 331 (380)
.++..+-..|.++|++|+++.+.|+.+... .++|.+
T Consensus 23 ~~v~~ilD~Ll~~~Vlt~ee~e~I~~~~t~-~~qAr~ 58 (94)
T cd08329 23 TSVLPILDSLLSANVITEQEYDVIKQKTQT-PLQARE 58 (94)
T ss_pred hhhHHHHHHHHHcCCCCHHHHHHHHcCCCh-HHHHHH
Confidence 345556789999999999999999876554 244444
No 299
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=27.88 E-value=5.4e+02 Score=24.60 Aligned_cols=74 Identities=19% Similarity=0.166 Sum_probs=39.0
Q ss_pred ceeEEEeCccccCcchHHHHHHHHHHc-CCCEEEEEEcCCcceeeecccccCCcCHHHHHhhcCeeEEEEeCCCHHHHHH
Q 016909 166 ACAVTYFGDGGTSEGDFHAALNFSAVT-EAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYS 244 (380)
Q Consensus 166 ~~vv~~~GDG~~~eG~~~Eal~~A~~~-~Lpvi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~G~~~~~VdG~D~~av~~ 244 (380)
..+++++|..+...-.+...+...... +..+.++..+ .+.+.. ...+...++..|+++..+. ++.++.+
T Consensus 75 ~~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D-~~ri~~-------~~ql~~~~~~~~~~~~~~~--~~~~l~~ 144 (270)
T PRK06731 75 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTD-HSRIGT-------VQQLQDYVKTIGFEVIAVR--DEAAMTR 144 (270)
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecC-CCCHHH-------HHHHHHHhhhcCceEEecC--CHHHHHH
Confidence 358888887776544444433322222 2344444433 332221 1224455666788877654 7777776
Q ss_pred HHHHH
Q 016909 245 AVHAA 249 (380)
Q Consensus 245 a~~~A 249 (380)
+++..
T Consensus 145 ~l~~l 149 (270)
T PRK06731 145 ALTYF 149 (270)
T ss_pred HHHHH
Confidence 66554
No 300
>PF08312 cwf21: cwf21 domain; InterPro: IPR013170 The cwf21 domain is found in proteins involved in mRNA splicing. Proteins containing this domain have been isolated as a subcomplex of the splicosome in Schizosaccharomyces pombe (Fission yeast) []. In yeast, this domain binds the protein Prp8p [], a large and highly conserved U5 snRNP protein which has been proposed as a protein cofactor at the spliceosomal catalytic centre []. The cwf21 domain is found in, amongst others, the small Cwc21p protein in yeast as well as in the much larger human ortholog SRm300 (serine/arginine repetitive matrix protein). ; PDB: 2E62_A.
Probab=27.87 E-value=1.5e+02 Score=20.54 Aligned_cols=30 Identities=23% Similarity=0.404 Sum_probs=22.3
Q ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Q 016909 298 TRFRKWIESNGWWNGDIESELRSSVRKQILH 328 (380)
Q Consensus 298 ~~~~~~L~~~g~~t~~~~~~i~~~~~~~v~~ 328 (380)
..|+..|.++|+ +++++++--+..++.+.+
T Consensus 14 ~elrd~LEe~g~-~~eeIe~kv~~~R~~L~~ 43 (46)
T PF08312_consen 14 LELRDELEEQGY-SEEEIEEKVDELRKKLLE 43 (46)
T ss_dssp HHHHHHHHHHT---HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCC-CHHHHHHHHHHHHHHHHh
Confidence 458999999997 999888777777776654
No 301
>cd08332 CARD_CASP2 Caspase activation and recruitment domain of Caspase-2. Caspase activation and recruitment domain (CARD) similar to that found in caspase-2. Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Caspase-2 (also known as ICH1, NEDD2, or CASP2) is one of the most evolutionarily conserved caspases, and plays a role in apoptosis, DNA damage response, cell cycle regulation, and tumor suppression. It is localized in the nucleus and exhibits properties of both an initiator and an effector caspase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and
Probab=27.39 E-value=79 Score=25.00 Aligned_cols=25 Identities=0% Similarity=0.056 Sum_probs=21.3
Q ss_pred HHHHHHHHHHCCCCCHHHHHHHHHH
Q 016909 297 VTRFRKWIESNGWWNGDIESELRSS 321 (380)
Q Consensus 297 i~~~~~~L~~~g~~t~~~~~~i~~~ 321 (380)
+..+..+|+++|++|+++.+.|++.
T Consensus 22 ~~~v~~~L~~~gvlt~~~~~~I~~~ 46 (90)
T cd08332 22 LDELLIHLLQKDILTDSMAESIMAK 46 (90)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHcC
Confidence 4447899999999999999999775
No 302
>PF01738 DLH: Dienelactone hydrolase family; InterPro: IPR002925 Dienelactone hydrolases play a crucial role in chlorocatechol degradation via the modified ortho cleavage pathway. Enzymes induced in 4-fluorobenzoate-utilizing bacteria have been classified into three groups on the basis of their specificity towards cis- and trans-dienelactone []. Some proteins contain repeated small fragments of this domain (for example rat kan-1 protein).; GO: 0016787 hydrolase activity; PDB: 1GGV_A 1ZIY_A 1ZI6_A 1ZIC_A 1ZJ5_A 1ZI8_A 1ZJ4_A 1ZI9_A 1ZIX_A 3F67_A.
Probab=27.04 E-value=3.3e+02 Score=24.26 Aligned_cols=54 Identities=17% Similarity=0.273 Sum_probs=25.0
Q ss_pred cccccCccHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEE
Q 016909 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICR 201 (380)
Q Consensus 142 ~g~lG~~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~ 201 (380)
.|.+|.+.+-.+.+-+|.+. ..=.-++++.| +.... ..+..+..-+.|++++.-
T Consensus 100 ig~vGfc~GG~~a~~~a~~~-~~~~a~v~~yg-~~~~~----~~~~~~~~~~~P~l~~~g 153 (218)
T PF01738_consen 100 IGVVGFCWGGKLALLLAARD-PRVDAAVSFYG-GSPPP----PPLEDAPKIKAPVLILFG 153 (218)
T ss_dssp EEEEEETHHHHHHHHHHCCT-TTSSEEEEES--SSSGG----GHHHHGGG--S-EEEEEE
T ss_pred EEEEEEecchHHhhhhhhhc-cccceEEEEcC-CCCCC----cchhhhcccCCCEeecCc
Confidence 46777766665555555432 12246777777 11111 112334445567777653
No 303
>COG1334 FlaG Uncharacterized flagellar protein FlaG [Cell motility and secretion]
Probab=26.90 E-value=73 Score=26.83 Aligned_cols=37 Identities=14% Similarity=0.184 Sum_probs=27.1
Q ss_pred CCCCCCCeeEeeCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q 016909 7 SSEERIPCYRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVT 47 (380)
Q Consensus 7 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~y~~M~~ 47 (380)
.+.-..+.++|.|.+..-+ ...+++++++++|+.|--
T Consensus 74 dd~lg~~vVkI~d~~TgeV----IRqIPpee~L~l~~r~~d 110 (120)
T COG1334 74 DDELGELVVKIIDKDTGEV----IRQIPPEEALELAARMRD 110 (120)
T ss_pred ecccCcEEEEEEECCCCcc----hhhCChHHHHHHHHHHHH
Confidence 3445567889998876532 236999999999999853
No 304
>PLN02618 tryptophan synthase, beta chain
Probab=26.70 E-value=5e+02 Score=26.56 Aligned_cols=70 Identities=23% Similarity=0.143 Sum_probs=39.3
Q ss_pred HHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcceeeecccccCCcCHHHHHhhcCeeE
Q 016909 152 AVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRS 231 (380)
Q Consensus 152 AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~G~~~ 231 (380)
+++.++..+..+. ..+|+-.|-|-. |. .....|+..++++++++-.+. + ..+ ..-..+.+.||.++
T Consensus 107 a~~~~l~A~~~g~-~~vIaesgaGNh--G~--AlA~aaa~~Gl~~~I~m~~~~--~----~~~---~~nv~~mr~lGA~V 172 (410)
T PLN02618 107 AVAQALLAKRLGK-KRIIAETGAGQH--GV--ATATVCARFGLECIVYMGAQD--M----ERQ---ALNVFRMRLLGAEV 172 (410)
T ss_pred HHHHHHHHHHcCC-CEEEEEcCcHHH--HH--HHHHHHHHcCCcEEEEEcCCc--h----hhh---hhhHHHHHHCCCEE
Confidence 4555555555554 445655554432 21 123345678999877775432 1 111 11234688999999
Q ss_pred EEEe
Q 016909 232 IRVD 235 (380)
Q Consensus 232 ~~Vd 235 (380)
+.|.
T Consensus 173 i~v~ 176 (410)
T PLN02618 173 RPVH 176 (410)
T ss_pred EEEe
Confidence 9994
No 305
>COG0044 PyrC Dihydroorotase and related cyclic amidohydrolases [Nucleotide transport and metabolism]
Probab=26.61 E-value=2.4e+02 Score=29.07 Aligned_cols=94 Identities=15% Similarity=0.145 Sum_probs=58.4
Q ss_pred eEEEeCccc--cCcchHHHHHHHHHHcCCCEEEEEEcCCc----ce-eeeccc---ccC---------CcCHHHHHhhcC
Q 016909 168 AVTYFGDGG--TSEGDFHAALNFSAVTEAPVIFICRNNGW----AI-STPISD---QFR---------SDGAVVKGRAYG 228 (380)
Q Consensus 168 vv~~~GDG~--~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~----~i-~~~~~~---~~~---------~~~~~~~a~a~G 228 (380)
+++|.+|+. .....+.+++..+...+.+++|-++|+.. .+ .+.... ... ......+++..|
T Consensus 144 ~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~Ed~~~~~~~~~~~g~~~~~~~~~~~p~~aE~~~iar~~~la~~~g 223 (430)
T COG0044 144 FKGFMDDSTGALDDDVLEEALEYAAELGALILVHAEDDDLIAEGVMNEGLRAPELGLAGRPPIAEASAIARDLELARATG 223 (430)
T ss_pred eEEEecCCcCcCCHHHHHHHHHHHHhcCCeEEEecCChhHhhhHHHhcCccchhhccCCCChHHHHHHHHHHHHHHHHhC
Confidence 477888885 57778899999999999999999999952 11 111111 001 112345678888
Q ss_pred eeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEe
Q 016909 229 VRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALT 266 (380)
Q Consensus 229 ~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t 266 (380)
.+++-+.=...+++ +.++.| +..+.++-.|+.-
T Consensus 224 ~~vhi~HiSt~~sv-~li~~a----k~~g~~vt~Evtp 256 (430)
T COG0044 224 ARVHICHISTKESV-ELIRAA----KAEGIRVTAEVTP 256 (430)
T ss_pred CcEEEEEcCCHHHH-HHHHHH----hhcCCceEEeecc
Confidence 66665544455544 233333 3456788887753
No 306
>cd08785 CARD_CARD9-like Caspase activation and recruitment domain of CARD9 and related proteins. Caspase activation and recruitment domain (CARD) found in CARD9, CARD14 (CARMA2), CARD10 (CARMA3), CARD11 (CARMA1) and BCL10. BCL10 (B-cell lymphoma 10), together with Malt1 (mucosa-associated lymphoid tissue-lymphoma-translocation gene 1), are integral components of the CBM signalosome. They associate with CARD9 to form M-CBM (CBM complex in myeloid immune cells), and with CARD11 to form L-CBM (CBM complex in lymphoid immune cells), which mediates activation of NF-kB and MAPK by ITAM-coupled receptors expressed on immune cells. BCL10/Malt1 also associates with CARD10, which is more widely expressed and is not restricted to hematopoietic cells, to play a role in GPCR-induced NF-kB activation. CARD14 has also been shown to associate with BCL10. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inf
Probab=26.35 E-value=68 Score=25.32 Aligned_cols=27 Identities=22% Similarity=0.245 Sum_probs=22.6
Q ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHH
Q 016909 297 VTRFRKWIESNGWWNGDIESELRSSVR 323 (380)
Q Consensus 297 i~~~~~~L~~~g~~t~~~~~~i~~~~~ 323 (380)
..++-.+|.++||+|+++.++|.+...
T Consensus 18 ~~~l~d~L~q~~VLt~~d~EeI~~~~t 44 (86)
T cd08785 18 PSRLTPYLRQCKVLDEQDEEEVLSSPR 44 (86)
T ss_pred HHHHHHHHHhcCCCCHHHHHHHhCCCc
Confidence 345889999999999999999988644
No 307
>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=26.31 E-value=6.3e+02 Score=24.77 Aligned_cols=116 Identities=17% Similarity=0.108 Sum_probs=63.9
Q ss_pred HHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcceeeecccccCCcCHHHHHhhcC-e
Q 016909 151 HAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYG-V 229 (380)
Q Consensus 151 ~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~G-~ 229 (380)
..++.-+..+.+.-.+.++.++|-|+=- | -.=|+++|.+.. .+.+++=|.-+. ....+..+..| +
T Consensus 23 s~~~~~l~~~~k~v~g~~vLITGgg~Gl-G-r~ialefa~rg~--~~vl~Din~~~~----------~etv~~~~~~g~~ 88 (300)
T KOG1201|consen 23 SLIKLLLPKPLKSVSGEIVLITGGGSGL-G-RLIALEFAKRGA--KLVLWDINKQGN----------EETVKEIRKIGEA 88 (300)
T ss_pred HHHHHhcccchhhccCCEEEEeCCCchH-H-HHHHHHHHHhCC--eEEEEeccccch----------HHHHHHHHhcCce
Confidence 3344444444445556788888866531 2 223566666655 455555444322 22333344335 7
Q ss_pred eEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEE-eecCCCCCCCCCCCCCCChhHHHH
Q 016909 230 RSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEAL-TYRVGHHTTSDDSTKYRPVDEIEW 289 (380)
Q Consensus 230 ~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~-t~R~~gHs~~Dd~~~Yr~~~e~~~ 289 (380)
..+.||=.|.+++++..++..+. -||+-|-+. ---..+|+..+ -+.+|++.
T Consensus 89 ~~y~cdis~~eei~~~a~~Vk~e----~G~V~ILVNNAGI~~~~~ll~-----~~d~ei~k 140 (300)
T KOG1201|consen 89 KAYTCDISDREEIYRLAKKVKKE----VGDVDILVNNAGIVTGKKLLD-----CSDEEIQK 140 (300)
T ss_pred eEEEecCCCHHHHHHHHHHHHHh----cCCceEEEeccccccCCCccC-----CCHHHHHH
Confidence 78899999999999988776653 455544332 22223444433 24566665
No 308
>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed
Probab=26.26 E-value=6.1e+02 Score=24.60 Aligned_cols=113 Identities=15% Similarity=0.122 Sum_probs=71.7
Q ss_pred CceeEEEeCccccCcchHHH----HHHHHHHcCCCEEEEEEcCCcceeeecccccCCcCHHHHHhhcCeeEEEEeCC--C
Q 016909 165 DACAVTYFGDGGTSEGDFHA----ALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGN--D 238 (380)
Q Consensus 165 ~~~vv~~~GDG~~~eG~~~E----al~~A~~~~Lpvi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~G~~~~~VdG~--D 238 (380)
+.++|.-++.|.+....... ...+|...+.||.+-.|--. ..+...+|-..|+.++-+||. +
T Consensus 42 ~sPvIlq~s~~~~~~~~~~~~~~~~~~~a~~~~VPValHLDHg~------------~~e~i~~ai~~GFtSVM~DgS~lp 109 (286)
T PRK12738 42 RSPVILAGTPGTFKHIALEEIYALCSAYSTTYNMPLALHLDHHE------------SLDDIRRKVHAGVRSAMIDGSHFP 109 (286)
T ss_pred CCCEEEEcCcchhhhCCHHHHHHHHHHHHHHCCCCEEEECCCCC------------CHHHHHHHHHcCCCeEeecCCCCC
Confidence 45788888888874322222 22335567789876654321 223556676779999999994 5
Q ss_pred HHHHHHHHHHHHHHhhccCCcEEEEEEeecCCCCCCC----CCCCCCCChhHHHHHH
Q 016909 239 ALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTS----DDSTKYRPVDEIEWWR 291 (380)
Q Consensus 239 ~~av~~a~~~A~~~ar~~~gP~lIe~~t~R~~gHs~~----Dd~~~Yr~~~e~~~~~ 291 (380)
.++=.+..++.+++|+..+ +-||+-.-+.+|-... ++...|.+++|..++-
T Consensus 110 ~eeNi~~T~evv~~Ah~~g--v~VEaElG~igg~ed~~~~~~~~~~~T~peea~~Fv 164 (286)
T PRK12738 110 FAENVKLVKSVVDFCHSQD--CSVEAELGRLGGVEDDMSVDAESAFLTDPQEAKRFV 164 (286)
T ss_pred HHHHHHHHHHHHHHHHHcC--CeEEEEEEeeCCccCCcccccchhcCCCHHHHHHHH
Confidence 6666677778888876643 6678877777653221 1123588999887763
No 309
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=25.32 E-value=1.1e+02 Score=27.82 Aligned_cols=38 Identities=24% Similarity=0.371 Sum_probs=32.0
Q ss_pred CCChHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
Q 016909 293 TQDPVTRFRKWIESNGWWNGDIESELRSSVRKQILHALQ 331 (380)
Q Consensus 293 ~~DPi~~~~~~L~~~g~~t~~~~~~i~~~~~~~v~~a~~ 331 (380)
.+|=+..++++|.+.|+ +|++.+++-.|+..++-+|-+
T Consensus 6 N~~y~~~l~~~L~~~~~-~e~~~e~~L~eil~~LleaQk 43 (206)
T PF06570_consen 6 NQEYIFDLRKYLRSSGV-SEEEIEELLEEILPHLLEAQK 43 (206)
T ss_pred HHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHHHh
Confidence 45677889999988884 999999999999999888754
No 310
>cd00032 CASc Caspase, interleukin-1 beta converting enzyme (ICE) homologues; Cysteine-dependent aspartate-directed proteases that mediate programmed cell death (apoptosis). Caspases are synthesized as inactive zymogens and activated by proteolysis of the peptide backbone adjacent to an aspartate. The resulting two subunits associate to form an (alpha)2(beta)2-tetramer which is the active enzyme. Activation of caspases can be mediated by other caspase homologs.
Probab=25.26 E-value=1.8e+02 Score=27.05 Aligned_cols=69 Identities=9% Similarity=0.007 Sum_probs=44.1
Q ss_pred CEEEEEEcCCcceeeecccc--cCCcCHHHHHhhcCeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEE
Q 016909 195 PVIFICRNNGWAISTPISDQ--FRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEA 264 (380)
Q Consensus 195 pvi~vv~NN~~~i~~~~~~~--~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~ 264 (380)
.+.+|+.|..|.-..+.... .....+.+.++.+|+.+....--+..++.+++++..+ .+..+.-+++-+
T Consensus 10 g~aLII~n~~f~~~~~~r~g~~~D~~~l~~~f~~lgF~V~~~~nlt~~~~~~~l~~f~~-~~~~~~d~~v~~ 80 (243)
T cd00032 10 GLALIINNENFDKGLKDRDGTDVDAENLTKLFESLGYEVEVKNNLTAEEILEELKEFAS-PDHSDSDSFVCV 80 (243)
T ss_pred CEEEEEechhcCCCCCCCCChHHHHHHHHHHHHHCCCEEEEeCCCCHHHHHHHHHHHHh-ccCCCCCeeEEE
Confidence 47778888777531111111 1123577889999999998877788899999988765 223344555444
No 311
>PRK08452 flagellar protein FlaG; Provisional
Probab=24.98 E-value=80 Score=26.73 Aligned_cols=41 Identities=17% Similarity=0.241 Sum_probs=28.7
Q ss_pred ccccCCCCCCCCeeEeeCCCC-CCCCCCCCCCCCHHHHHHHHHHHHHH
Q 016909 2 RFISESSEERIPCYRVLDDDG-QPFPDSSFVKVSEGVAIKMYNDMVTL 48 (380)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~l~~~y~~M~~~ 48 (380)
+| +..+......++|+|.+- .++ ..+++++++++++.|...
T Consensus 74 ~F-~~de~~~~~vVkVvD~~T~eVI-----RqIP~Ee~L~l~~~m~e~ 115 (124)
T PRK08452 74 RF-GYNDKIKGLVVSVKEANGGKVI-----REIPSKEAIELMEYMRDV 115 (124)
T ss_pred EE-EEcCCCCcEEEEEEECCCCcee-----eeCCCHHHHHHHHHHHHh
Confidence 45 334445567899999773 343 368999999999988553
No 312
>PF02520 DUF148: Domain of unknown function DUF148; InterPro: IPR003677 This entry represents the domain DUF148, which has no known function.
Probab=24.96 E-value=1.2e+02 Score=24.76 Aligned_cols=36 Identities=11% Similarity=0.192 Sum_probs=24.5
Q ss_pred CCCccccccccCCCccHHHHHHHHHHHHHhCCCCCC
Q 016909 340 PISDLFTDVYDVSPSNLREQEHSLRETIKKHPQDYP 375 (380)
Q Consensus 340 ~~~~~~~~vy~~~~~~~~~~~~~l~~~~~~~p~~~~ 375 (380)
....-+..+.....-...++.+.+.+....+|.+++
T Consensus 65 ~a~~~l~~I~~n~~lT~~q~~~~I~~l~~~~~~e~~ 100 (113)
T PF02520_consen 65 SAFAKLSAILDNKSLTRQQQQEAIDALRKQYPEEVD 100 (113)
T ss_pred HHHHHHHHHHcCcccCHHHHHHHHHHHHHHCCHHHH
Confidence 333445555555555566788899999999998854
No 313
>TIGR00512 salvage_mtnA S-methyl-5-thioribose-1-phosphate isomerase. The delineation of this family was based in part on a discussion and neighbor-joining phylogenetic study, by Kyrpides and Woese, of archaeal and other proteins homologous to the alpha, beta, and delta subunits of eukaryotic initiation factor 2B (eIF-2B), a five-subunit molecule that catalyzes GTP recycling for eIF-2. This clade is now recognized to include the methionine salvage pathway enzyme MtnA.
Probab=24.60 E-value=5e+02 Score=25.74 Aligned_cols=116 Identities=16% Similarity=0.133 Sum_probs=56.3
Q ss_pred cccccC-ccHHHHHHHHHhhhcCCCceeEEEeCccc-cCcchHHHHHHHHHHcCCCEEEEEEcCCcceeeecccccCCcC
Q 016909 142 SSTIAT-QLPHAVGAAYALKMDRKDACAVTYFGDGG-TSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDG 219 (380)
Q Consensus 142 ~g~lG~-~~p~AvG~A~A~k~~~~~~~vv~~~GDG~-~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~i~~~~~~~~~~~~ 219 (380)
+|++.. +.+.|+|.=......+..-.|++. ++. ..||.-. ...-....++|+.+|++|--..+.. .... |
T Consensus 156 sg~lat~~~gtal~~l~~A~~~g~~~~V~v~--EsrP~~qG~rl-ta~~L~~~GI~vtlI~Dsav~~~m~-~~~v----d 227 (331)
T TIGR00512 156 TGSLATAGYGTALGVIRSAHEKGRLEHVYAD--ETRPRLQGARL-TAWELVQEGIPATLITDSMAAHLMK-HGEV----D 227 (331)
T ss_pred CccccccccchHHHHHHHHHHcCCceEEEEC--CCCchhhHHHH-HHHHHHHCCCCEEEEcccHHHHHhc-ccCC----C
Confidence 444432 334566654444434444444444 333 2455311 1122346789999888874322211 0000 0
Q ss_pred HHHHHhhcCeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCCC
Q 016909 220 AVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGH 271 (380)
Q Consensus 220 ~~~~a~a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R~~g 271 (380)
.--.|.+.+.-||.=...+ -+..-|+ .|+..+.|+++-+-+|.+.-
T Consensus 228 ----~VivGAd~v~~nG~v~nki-GT~~lA~-~Ak~~~vPfyV~a~~~kfd~ 273 (331)
T TIGR00512 228 ----AVIVGADRIAANGDTANKI-GTYQLAV-LAKHHGVPFYVAAPTSTIDL 273 (331)
T ss_pred ----EEEEcccEEecCCCEeehh-hHHHHHH-HHHHhCCCEEEecccccccc
Confidence 0014777777777322221 1122222 12346899999999888753
No 314
>KOG0369 consensus Pyruvate carboxylase [Energy production and conversion]
Probab=24.58 E-value=1.9e+02 Score=31.60 Aligned_cols=32 Identities=25% Similarity=0.226 Sum_probs=23.4
Q ss_pred eeEEEeCccccCcchHHHHHHHHHHcCCCEEEEE
Q 016909 167 CAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFIC 200 (380)
Q Consensus 167 ~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv 200 (380)
+.++=--||-.. ...||+.|+..|++||||=-
T Consensus 160 VpvVPGTpgPit--t~~EA~eF~k~yG~PvI~KA 191 (1176)
T KOG0369|consen 160 VPVVPGTPGPIT--TVEEALEFVKEYGLPVIIKA 191 (1176)
T ss_pred CCccCCCCCCcc--cHHHHHHHHHhcCCcEEEee
Confidence 344444566664 47899999999999998753
No 315
>PF00926 DHBP_synthase: 3,4-dihydroxy-2-butanone 4-phosphate synthase; InterPro: IPR000422 3,4-dihydroxy-2-butanone 4-phosphate synthase (4.1.99.12 from EC) (DHBP synthase) (RibB) catalyses the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate, the latter serving as the biosynthetic precursor for the xylene ring of riboflavin []. In Photobacterium leiognathi, the riboflavin synthesis genes ribB (DHBP synthase), ribE (riboflavin synthase), ribH (lumazone synthase) and ribA (GTP cyclohydrolase II) all reside in the lux operon []. RibB is sometimes found as a bifunctional enzyme with GTP cyclohydrolase II that catalyses the first committed step in the biosynthesis of riboflavin (IPR000926 from INTERPRO). No sequences with significant homology to DHBP synthase are found in the metazoa.; GO: 0008686 3,4-dihydroxy-2-butanone-4-phosphate synthase activity, 0009231 riboflavin biosynthetic process; PDB: 1K4O_A 1K4L_A 1K4P_A 1K49_A 1K4I_A 1TKU_A 1TKS_B 2RIS_A 2RIU_A 3MIO_A ....
Probab=24.53 E-value=1.2e+02 Score=27.83 Aligned_cols=68 Identities=22% Similarity=0.310 Sum_probs=45.8
Q ss_pred CCCceeEEEeCcccc--CcchHHHHHHHHHHcCC-CEEEEEEcCCcceeeecccccCCcCHHHHHhhcCeeEEEEe
Q 016909 163 RKDACAVTYFGDGGT--SEGDFHAALNFSAVTEA-PVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVD 235 (380)
Q Consensus 163 ~~~~~vv~~~GDG~~--~eG~~~Eal~~A~~~~L-pvi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~G~~~~~Vd 235 (380)
.|+++..+...+|.+ ..|...-++.+|..-++ |+-.+|+ +-.......+.++..+.|+.+|++.+.++
T Consensus 118 ~PGHv~Pl~a~~gGvl~R~GhtEaavdLa~lAGl~p~avi~e-----il~~dG~~~~~~~~~~fA~~~~l~~vsi~ 188 (194)
T PF00926_consen 118 RPGHVFPLRARPGGVLERRGHTEAAVDLARLAGLSPVAVICE-----ILDDDGDMARRDELEEFAKKHGLPIVSIE 188 (194)
T ss_dssp EEEEEEEEEE-TTGGGTSSSHHHHHHHHHHHTTS-SBEEEEE-----BBETTSSBHCHHHHHHHHHHTT-EEEEHH
T ss_pred CCCCCccceecCCcccCCCChHHHHHHHHHHhCCCCcEEEEE-----EeCCCCCcCCHHHHHHHHHHcCCcEEEHH
Confidence 355666677777776 46888888999999999 8666664 11111122334567789999999999876
No 316
>PRK08558 adenine phosphoribosyltransferase; Provisional
Probab=24.43 E-value=5.9e+02 Score=23.82 Aligned_cols=101 Identities=12% Similarity=0.051 Sum_probs=56.6
Q ss_pred cHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcceeeeccc---ccCC----cCHH
Q 016909 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISD---QFRS----DGAV 221 (380)
Q Consensus 149 ~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~i~~~~~~---~~~~----~~~~ 221 (380)
+-..+|..++.++.+.+--+|+....|++- =|..+|...++|++++=..+..+.....+. ..+. -.+.
T Consensus 95 ~~~~v~~~la~~~~~~~~D~Vvtv~~~GI~-----lA~~lA~~L~~p~vi~Rk~~~~~~~~~v~~y~s~s~~~~~~~~l~ 169 (238)
T PRK08558 95 FLRLIAPVVAERFMGLRVDVVLTAATDGIP-----LAVAIASYFGADLVYAKKSKETGVEKFYEEYQRLASGIEVTLYLP 169 (238)
T ss_pred HHHHHHHHHHHHccCCCCCEEEEECcccHH-----HHHHHHHHHCcCEEEEEecCCCCCcceEEEeeccCCCceeEEEec
Confidence 556778899988876543445545444442 235578889999987655544332111110 0000 0111
Q ss_pred HHHhhcCeeEEEEeCCCHHHHHHHHHHHHHHhhcc
Q 016909 222 VKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGE 256 (380)
Q Consensus 222 ~~a~a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~ 256 (380)
+.+-.-|-.++-|| |+..-=.++..+++.+++.
T Consensus 170 ~~~l~~G~rVLIVD--Dvi~TG~Tl~~~~~ll~~~ 202 (238)
T PRK08558 170 ASALKKGDRVLIVD--DIIRSGETQRALLDLARQA 202 (238)
T ss_pred HHHcCCcCEEEEEe--cccccCHHHHHHHHHHHHc
Confidence 22333488999999 7766666666666655554
No 317
>PLN02522 ATP citrate (pro-S)-lyase
Probab=24.37 E-value=3.3e+02 Score=29.40 Aligned_cols=86 Identities=14% Similarity=0.094 Sum_probs=51.9
Q ss_pred CCceeEEEeCc-cccCcchHHHHHHHHHHcCCCEEEEEEcCCcce------eeecccccCCcC------HHHHHhhcCee
Q 016909 164 KDACAVTYFGD-GGTSEGDFHAALNFSAVTEAPVIFICRNNGWAI------STPISDQFRSDG------AVVKGRAYGVR 230 (380)
Q Consensus 164 ~~~~vv~~~GD-G~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~i------~~~~~~~~~~~~------~~~~a~a~G~~ 230 (380)
++-.+|+++|+ |.-.+-.|.|++.-+. .+-|||.++---.-.. .+++. .....+ +...++..|+.
T Consensus 221 p~Tk~IvlygEiGg~~e~~f~ea~~~a~-~~KPVVa~kaGrsa~~~~~~aa~gHtG-Aiag~~~~ta~~k~aAlr~aGv~ 298 (608)
T PLN02522 221 PQIKMIVVLGELGGRDEYSLVEALKQGK-VSKPVVAWVSGTCARLFKSEVQFGHAG-AKSGGDMESAQAKNKALKDAGAI 298 (608)
T ss_pred CCCCEEEEEEecCchhHHHHHHHHHHhc-CCCCEEEEeccCCCccCcccccccccc-ccccCCCccHHHHHHHHHHCCCe
Confidence 45679999999 8887766666655444 5679888874332100 00111 111112 44556777765
Q ss_pred EEEEeCCCHHHHHHHHHHHHHHhhc
Q 016909 231 SIRVDGNDALAIYSAVHAAREMAIG 255 (380)
Q Consensus 231 ~~~VdG~D~~av~~a~~~A~~~ar~ 255 (380)
.. + +++++.++++++++...+
T Consensus 299 vv--~--s~~El~~~~~~~~~~~~~ 319 (608)
T PLN02522 299 VP--T--SFEALEAAIKETFEKLVE 319 (608)
T ss_pred Ee--C--CHHHHHHHHHHHHHHHHh
Confidence 44 4 899999999888765443
No 318
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=24.33 E-value=2.8e+02 Score=30.03 Aligned_cols=80 Identities=20% Similarity=0.150 Sum_probs=42.2
Q ss_pred cCccHHHHHHHHHhhhcC-------CCceeEEEeCccccCcc-----hHHHHHHHHHH---cCCCEEEEEEcCCcceeee
Q 016909 146 ATQLPHAVGAAYALKMDR-------KDACAVTYFGDGGTSEG-----DFHAALNFSAV---TEAPVIFICRNNGWAISTP 210 (380)
Q Consensus 146 G~~~p~AvG~A~A~k~~~-------~~~~vv~~~GDG~~~eG-----~~~Eal~~A~~---~~Lpvi~vv~NN~~~i~~~ 210 (380)
|++.+++-|+..|.+... ..+.+++++.||..+.+ ...+++..|.. .++++++|-..+.
T Consensus 538 gG~Tpl~~aL~~A~~~l~~~~~~~~~~~~~vvliTDG~~n~~~~~~~~~~~~~~~a~~l~~~~i~~~vIdt~~~------ 611 (633)
T TIGR02442 538 GGRTPLAAGLLKAAEVLSNELLRDDDGRPLLVVITDGRANVADGGEPPTDDARTIAAKLAARGILFVVIDTESG------ 611 (633)
T ss_pred CCCCCHHHHHHHHHHHHHHhhccCCCCceEEEEECCCCCCCCCCCCChHHHHHHHHHHHHhcCCeEEEEeCCCC------
Confidence 455555666555554322 34578999999988653 23444444444 3445444421111
Q ss_pred cccccCCcCHHHHHhhcCeeEEEE
Q 016909 211 ISDQFRSDGAVVKGRAYGVRSIRV 234 (380)
Q Consensus 211 ~~~~~~~~~~~~~a~a~G~~~~~V 234 (380)
.....-..++|+..|...+.+
T Consensus 612 ---~~~~~~~~~lA~~~gg~y~~l 632 (633)
T TIGR02442 612 ---FVRLGLAEDLARALGGEYVRL 632 (633)
T ss_pred ---CcchhHHHHHHHhhCCeEEec
Confidence 011122456777777776654
No 319
>cd01561 CBS_like CBS_like: This subgroup includes Cystathionine beta-synthase (CBS) and Cysteine synthase. CBS is a unique heme-containing enzyme that catalyzes a pyridoxal 5'-phosphate (PLP)-dependent condensation of serine and homocysteine to give cystathionine. Deficiency of CBS leads to homocystinuria, an inherited disease of sulfur metabolism characterized by increased levels of the toxic metabolite homocysteine. Cysteine synthase on the other hand catalyzes the last step of cysteine biosynthesis. This subgroup also includes an O-Phosphoserine sulfhydrylase found in hyperthermophilic archaea which produces L-cysteine from sulfide and the more thermostable O-phospho-L-serine.
Probab=24.28 E-value=6.2e+02 Score=23.99 Aligned_cols=39 Identities=18% Similarity=0.118 Sum_probs=27.6
Q ss_pred HHHHcCCCEEEEEEcCCcceeeecccccCCcCHHHHHhhcCeeEEEEeCCC
Q 016909 188 FSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGND 238 (380)
Q Consensus 188 ~A~~~~Lpvi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~G~~~~~VdG~D 238 (380)
.|..+++|+++++..+- ...-.+..+.||.+++.+++..
T Consensus 71 ~a~~~G~~~~i~vp~~~------------~~~k~~~~~~~Ga~v~~~~~~~ 109 (291)
T cd01561 71 VAAAKGYRFIIVMPETM------------SEEKRKLLRALGAEVILTPEAE 109 (291)
T ss_pred HHHHcCCeEEEEECCCC------------CHHHHHHHHHcCCEEEEeCCCC
Confidence 45578999888875441 1223467888999999999764
No 320
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=24.22 E-value=1.5e+02 Score=26.08 Aligned_cols=84 Identities=12% Similarity=0.090 Sum_probs=51.6
Q ss_pred ceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcceeeecc--------cccCCcCHHHHHhhcCeeEEEEeCC
Q 016909 166 ACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPIS--------DQFRSDGAVVKGRAYGVRSIRVDGN 237 (380)
Q Consensus 166 ~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~i~~~~~--------~~~~~~~~~~~a~a~G~~~~~VdG~ 237 (380)
..-++++|-..+..+ .-.+....++++.+.+.+|...+..-.. -........+.|+.+|++++.+.-
T Consensus 77 ~~~Iavv~~~~~~~~----~~~~~~ll~~~i~~~~~~~~~e~~~~i~~~~~~G~~viVGg~~~~~~A~~~gl~~v~i~s- 151 (176)
T PF06506_consen 77 GPKIAVVGYPNIIPG----LESIEELLGVDIKIYPYDSEEEIEAAIKQAKAEGVDVIVGGGVVCRLARKLGLPGVLIES- 151 (176)
T ss_dssp TSEEEEEEESS-SCC----HHHHHHHHT-EEEEEEESSHHHHHHHHHHHHHTT--EEEESHHHHHHHHHTTSEEEESS--
T ss_pred CCcEEEEecccccHH----HHHHHHHhCCceEEEEECCHHHHHHHHHHHHHcCCcEEECCHHHHHHHHHcCCcEEEEEe-
Confidence 355666666666544 2345566788888888777532221111 011222456889999999999873
Q ss_pred CHHHHHHHHHHHHHHhh
Q 016909 238 DALAIYSAVHAAREMAI 254 (380)
Q Consensus 238 D~~av~~a~~~A~~~ar 254 (380)
..++++.|+.+|+.-++
T Consensus 152 g~esi~~Al~eA~~i~~ 168 (176)
T PF06506_consen 152 GEESIRRALEEALRIAR 168 (176)
T ss_dssp -HHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHH
Confidence 47899999999986544
No 321
>TIGR00506 ribB 3,4-dihydroxy-2-butanone 4-phosphate synthase. Several members of the family are bifunctional, involving both ribA and ribB function. In these cases, ribA tends to be on the C-terminal end of the protein and ribB tends to be on the N-terminal.
Probab=24.17 E-value=2.1e+02 Score=26.21 Aligned_cols=69 Identities=16% Similarity=0.237 Sum_probs=46.9
Q ss_pred cCCCceeEEEeCcccc--CcchHHHHHHHHHHcCC-CEEEEEEcCCcceeeecccccCCcCHHHHHhhcCeeEEEEe
Q 016909 162 DRKDACAVTYFGDGGT--SEGDFHAALNFSAVTEA-PVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVD 235 (380)
Q Consensus 162 ~~~~~~vv~~~GDG~~--~eG~~~Eal~~A~~~~L-pvi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~G~~~~~Vd 235 (380)
..|+++.....-+|.+ ..|..--++.++..-++ |+-++|+= -.......+.++..+.|+.+|++.+.++
T Consensus 122 ~~PGHvfPL~a~~gGvl~R~GhTEaavdL~~lAGl~p~~vicEi-----l~~dG~m~~~~~~~~fA~~~~l~~isi~ 193 (199)
T TIGR00506 122 RRPGHVFPLRAADGGVLTRGGHTEASVDLAELAGLKPAGVICEM-----MNDDGTMARKPELMEYAKKHNLKLISIE 193 (199)
T ss_pred CCCCccceEEeccCCCcCCCChHHHHHHHHHHcCCCceEEEEEE-----eCCCCCccCHHHHHHHHHHcCCcEEEHH
Confidence 3566666666667765 57887778889999998 87666651 0011122344567889999999998765
No 322
>TIGR00515 accD acetyl-CoA carboxylase, carboxyl transferase, beta subunit. The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the beta chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.
Probab=24.14 E-value=1.4e+02 Score=28.89 Aligned_cols=24 Identities=17% Similarity=0.317 Sum_probs=19.0
Q ss_pred HHHHHHHHcCCCEEEEEEcCCcce
Q 016909 184 AALNFSAVTEAPVIFICRNNGWAI 207 (380)
Q Consensus 184 Eal~~A~~~~Lpvi~vv~NN~~~i 207 (380)
.++.+|...++|+|++++..+..+
T Consensus 146 r~~e~A~~~~lPlV~l~dSgGaRm 169 (285)
T TIGR00515 146 RAIEKALEDNCPLIIFSASGGARM 169 (285)
T ss_pred HHHHHHHHcCCCEEEEEcCCCccc
Confidence 457778889999999998887643
No 323
>PF00140 Sigma70_r1_2: Sigma-70 factor, region 1.2; InterPro: IPR009042 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. ; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 1SMY_F 1IW7_P 1SIG_A 3IYD_F 2BE5_F 2A6E_F 2CW0_F 2A69_P 2A6H_P 3DXJ_P ....
Probab=24.14 E-value=1.4e+02 Score=19.43 Aligned_cols=35 Identities=26% Similarity=0.186 Sum_probs=26.8
Q ss_pred ChHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
Q 016909 295 DPVTRFRKWIESNGWWNGDIESELRSSVRKQILHA 329 (380)
Q Consensus 295 DPi~~~~~~L~~~g~~t~~~~~~i~~~~~~~v~~a 329 (380)
||+..|-+.+-..-++|.+|..++-.++++-.+.|
T Consensus 2 D~l~~Yl~ei~~~~LLt~eeE~~LA~~i~~g~~~a 36 (37)
T PF00140_consen 2 DSLRLYLKEIGRYPLLTAEEEIELARRIRKGDEAA 36 (37)
T ss_dssp HHHHHHHHHHHHS-EETTHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHcCCCCCCHHHHHHHHHHHHHhHHhc
Confidence 68888888888889999998888877777655443
No 324
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=24.05 E-value=4.8e+02 Score=25.14 Aligned_cols=54 Identities=9% Similarity=0.046 Sum_probs=35.4
Q ss_pred CCceeEEEeCccccCcchHHHHHHHHHHc-CC--CEEEEEEcCCcceeeecccccCCcCHHHHHhhcCeeEEEEeC
Q 016909 164 KDACAVTYFGDGGTSEGDFHAALNFSAVT-EA--PVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDG 236 (380)
Q Consensus 164 ~~~~vv~~~GDG~~~eG~~~Eal~~A~~~-~L--pvi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~G~~~~~VdG 236 (380)
+.+++|+..|.|+. .++|--+... ++ -++.|+.|+. +...+|+.+|+|++.++-
T Consensus 89 ~~ri~vl~Sg~gsn-----l~al~~~~~~~~~~~~i~~visn~~--------------~~~~lA~~~gIp~~~~~~ 145 (286)
T PRK06027 89 RKRVVILVSKEDHC-----LGDLLWRWRSGELPVEIAAVISNHD--------------DLRSLVERFGIPFHHVPV 145 (286)
T ss_pred CcEEEEEEcCCCCC-----HHHHHHHHHcCCCCcEEEEEEEcCh--------------hHHHHHHHhCCCEEEecc
Confidence 44567777777554 4566655443 34 4777777763 355679999999998753
No 325
>PRK08610 fructose-bisphosphate aldolase; Reviewed
Probab=23.92 E-value=6.7e+02 Score=24.30 Aligned_cols=113 Identities=16% Similarity=0.123 Sum_probs=71.4
Q ss_pred CceeEEEeCccccCc-ch---HHHHHH-HHHHcC--CCEEEEEEcCCcceeeecccccCCcCHHHHHhhcCeeEEEEeCC
Q 016909 165 DACAVTYFGDGGTSE-GD---FHAALN-FSAVTE--APVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGN 237 (380)
Q Consensus 165 ~~~vv~~~GDG~~~e-G~---~~Eal~-~A~~~~--Lpvi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~G~~~~~VdG~ 237 (380)
+.+++.-+..|.+.. |. +...+. +|...+ .||.+-.|--. ..+...+|-..|+.++-+||.
T Consensus 42 ~sPvIl~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~vPV~lHLDHg~------------~~e~i~~ai~~GftSVM~DgS 109 (286)
T PRK08610 42 NAPVILGVSEGAARYMSGFYTVVKMVEGLMHDLNITIPVAIHLDHGS------------SFEKCKEAIDAGFTSVMIDAS 109 (286)
T ss_pred CCCEEEEcCccHHhhcCcHHHHHHHHHHHHHHcCCCCCEEEECCCCC------------CHHHHHHHHHcCCCEEEEeCC
Confidence 467888888887643 31 222233 344555 58665544211 123446677779999999994
Q ss_pred --CHHHHHHHHHHHHHHhhccCCcEEEEEEeecCCCCCCC--CCCCCCCChhHHHHHH
Q 016909 238 --DALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTS--DDSTKYRPVDEIEWWR 291 (380)
Q Consensus 238 --D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R~~gHs~~--Dd~~~Yr~~~e~~~~~ 291 (380)
+.++=.+..++.+++|+..+ +-||+-.-+.+|-... ++...|.+++|.+++-
T Consensus 110 ~l~~eeNi~~T~~vve~Ah~~g--v~VEaElG~vgg~ed~~~~~~~~yT~peea~~Fv 165 (286)
T PRK08610 110 HSPFEENVATTKKVVEYAHEKG--VSVEAELGTVGGQEDDVVADGIIYADPKECQELV 165 (286)
T ss_pred CCCHHHHHHHHHHHHHHHHHcC--CEEEEEEeccCCccCCCCCcccccCCHHHHHHHH
Confidence 56666677778888877654 6788888777654321 1234599999988774
No 326
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=23.85 E-value=4.4e+02 Score=24.99 Aligned_cols=20 Identities=10% Similarity=-0.124 Sum_probs=13.2
Q ss_pred HHHHHhhcCeeEEEEeCCCH
Q 016909 220 AVVKGRAYGVRSIRVDGNDA 239 (380)
Q Consensus 220 ~~~~a~a~G~~~~~VdG~D~ 239 (380)
+.+..+.++...+-+|..+.
T Consensus 72 ~~~~l~~~~~d~vV~D~y~~ 91 (279)
T TIGR03590 72 LINLLEEEKFDILIVDHYGL 91 (279)
T ss_pred HHHHHHhcCCCEEEEcCCCC
Confidence 44566666777888886543
No 327
>smart00114 CARD Caspase recruitment domain. Motif contained in proteins involved in apoptotic signalling. Mediates homodimerisation. Structure consists of six antiparallel helices arranged in a topology homologue to the DEATH and the DED domain.
Probab=23.76 E-value=67 Score=24.91 Aligned_cols=26 Identities=4% Similarity=0.106 Sum_probs=21.5
Q ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHH
Q 016909 299 RFRKWIESNGWWNGDIESELRSSVRK 324 (380)
Q Consensus 299 ~~~~~L~~~g~~t~~~~~~i~~~~~~ 324 (380)
.+-.+|+++|++|+++.+.|++.-..
T Consensus 24 ~vld~L~~~~Vlt~~e~e~i~~~~t~ 49 (88)
T smart00114 24 GLLDYLVEKNVLTEKEIEAIKAATTK 49 (88)
T ss_pred HHHHHHHHcCCCCHHHHHHHHccCCh
Confidence 46789999999999999998775443
No 328
>cd05710 SIS_1 A subgroup of the SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=23.30 E-value=1.8e+02 Score=23.68 Aligned_cols=40 Identities=20% Similarity=0.219 Sum_probs=27.6
Q ss_pred CCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCC
Q 016909 163 RKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG 204 (380)
Q Consensus 163 ~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~ 204 (380)
+++..++++..-|... ...+++..|...+.|+|.|..+..
T Consensus 46 ~~~dl~I~iS~SG~t~--~~~~~~~~a~~~g~~vi~iT~~~~ 85 (120)
T cd05710 46 TEKSVVILASHSGNTK--ETVAAAKFAKEKGATVIGLTDDED 85 (120)
T ss_pred CCCcEEEEEeCCCCCh--HHHHHHHHHHHcCCeEEEEECCCC
Confidence 3456677777777665 466778888888888777776543
No 329
>PRK07668 hypothetical protein; Validated
Probab=23.17 E-value=1.3e+02 Score=28.78 Aligned_cols=39 Identities=5% Similarity=0.130 Sum_probs=32.6
Q ss_pred CCChHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 016909 293 TQDPVTRFRKWIESNGWWNGDIESELRSSVRKQILHALQE 332 (380)
Q Consensus 293 ~~DPi~~~~~~L~~~g~~t~~~~~~i~~~~~~~v~~a~~~ 332 (380)
.+|=+..++++|..+| .+++|.+++-.|+..++.++-+.
T Consensus 6 Neefl~~L~~yL~~~g-lseeeieeiL~Ei~~hLlEgQk~ 44 (254)
T PRK07668 6 GRKFLDDTRVYLIAKG-IKEEDIESFLEDAELHLIEGEKD 44 (254)
T ss_pred HHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHHHHHc
Confidence 3566778999999998 59999999999999988887653
No 330
>cd01671 CARD Caspase activation and recruitment domain: a protein-protein interaction domain. Caspase activation and recruitment domains (CARDs) are death domains (DDs) found associated with caspases. Caspases are aspartate-specific cysteine proteases with functions in apoptosis, immune signaling, inflammation, and host-defense mechanisms. In addition to caspases, proteins containing CARDs include adaptor proteins such as RAIDD, CARD9, and RIG-I-like helicases, which can form mutliprotein complexes and play important roles in mediating the signals to induce immune and inflammatory responses. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and DED (Death Effector Domain). They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=23.14 E-value=1.1e+02 Score=22.93 Aligned_cols=29 Identities=17% Similarity=0.125 Sum_probs=23.9
Q ss_pred ChHHHHHHHHHHCCCCCHHHHHHHHHHHH
Q 016909 295 DPVTRFRKWIESNGWWNGDIESELRSSVR 323 (380)
Q Consensus 295 DPi~~~~~~L~~~g~~t~~~~~~i~~~~~ 323 (380)
.++..+-.+|.++|++|.++.+.|.....
T Consensus 13 ~~~~~il~~L~~~~vlt~~e~~~i~~~~~ 41 (80)
T cd01671 13 LDVEDVLDHLLSDGVLTEEEYEKIRSEST 41 (80)
T ss_pred ccHHHHHHHHHHcCCCCHHHHHHHHcCCC
Confidence 36677788999999999999998877643
No 331
>PF09999 DUF2240: Uncharacterized protein conserved in archaea (DUF2240); InterPro: IPR018716 This family of various hypothetical archaeal proteins has no known function.
Probab=23.13 E-value=3.8e+02 Score=23.26 Aligned_cols=80 Identities=14% Similarity=0.119 Sum_probs=49.0
Q ss_pred CHHHHHHHHHHHHHHhhccCCcEEEEEEe---ecCCCCCCCCCCCCCCChhHHHHHHhCCChHHHHHHHHHHCCCCCHHH
Q 016909 238 DALAIYSAVHAAREMAIGEGRPILIEALT---YRVGHHTTSDDSTKYRPVDEIEWWRTTQDPVTRFRKWIESNGWWNGDI 314 (380)
Q Consensus 238 D~~av~~a~~~A~~~ar~~~gP~lIe~~t---~R~~gHs~~Dd~~~Yr~~~e~~~~~~~~DPi~~~~~~L~~~g~~t~~~ 314 (380)
++++..+.+..|.+. | ||+... ...+..++.+=|..|+|.+++- + ++||+.++-.++.++.-++..+
T Consensus 35 spdqAk~li~~A~~e-----G--Ll~~~~~~l~~~Fd~~~v~iP~~FkP~~~~l--~-e~~~fe~ild~ia~~~g~~~~e 104 (144)
T PF09999_consen 35 SPDQAKRLIDEAIEE-----G--LLEEEGGYLVPNFDPSEVEIPLGFKPDEEIL--Q-ERDPFERILDYIAAKTGIEKQE 104 (144)
T ss_pred CHHHHHHHHHHHHHC-----C--CeeecCCEEEEecCccccccCCCCCCcHHHH--h-cccHHHHHHHHHHHhcCCCHHH
Confidence 566777777777642 1 221111 1112233334467898876653 3 6999999999999944467776
Q ss_pred HHHHHHHHHHHHH
Q 016909 315 ESELRSSVRKQIL 327 (380)
Q Consensus 315 ~~~i~~~~~~~v~ 327 (380)
+-+...+.++++.
T Consensus 105 vv~~in~~q~~~~ 117 (144)
T PF09999_consen 105 VVAEINELQEELG 117 (144)
T ss_pred HHHHHHHHHHHHh
Confidence 6555555777666
No 332
>PLN03013 cysteine synthase
Probab=23.11 E-value=3.9e+02 Score=27.52 Aligned_cols=38 Identities=18% Similarity=0.121 Sum_probs=27.1
Q ss_pred HHHHcCCCEEEEEEcCCcceeeecccccCCcCHHHHHhhcCeeEEEEeCC
Q 016909 188 FSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGN 237 (380)
Q Consensus 188 ~A~~~~Lpvi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~G~~~~~VdG~ 237 (380)
.|...++|+++|+.++- ...-.+..++||.+++.++++
T Consensus 193 ~a~~~G~~~~VvvP~~~------------s~~K~~~ira~GAeVi~v~~~ 230 (429)
T PLN03013 193 IAASRGYRLILTMPASM------------SMERRVLLKAFGAELVLTDPA 230 (429)
T ss_pred HHHHcCCCEEEEECCCC------------cHHHHHHHHHcCCEEEEECCC
Confidence 45578999998886642 122446788899999998764
No 333
>TIGR02482 PFKA_ATP 6-phosphofructokinase. 6-phosphofructokinase (EC 2.7.1.11) catalyzes the addition of phosphate from ATP to fructose 6-phosphate to give fructose 1,6-bisphosphate. This represents a key control step in glycolysis. This model hits bacterial ATP-dependent 6-phosphofructokinases which lack a beta-hairpin loop present in TIGR02483 family members. TIGR02483 contains members that are ATP-dependent as well as members that are pyrophosphate-dependent. TIGR02477 represents the pyrophosphate-dependent phosphofructokinase, diphosphate--fructose-6-phosphate 1-phosphotransferase (EC 2.7.1.90).
Probab=23.09 E-value=1.7e+02 Score=28.60 Aligned_cols=36 Identities=25% Similarity=0.169 Sum_probs=24.1
Q ss_pred ceeEEEeCccccCcchHHHHHHHHHHcCCCEEEE---EEcCCcc
Q 016909 166 ACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFI---CRNNGWA 206 (380)
Q Consensus 166 ~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~v---v~NN~~~ 206 (380)
...+++-|||++. -+..++..+++|+|-| ++||-.+
T Consensus 93 d~Li~IGGdgs~~-----~a~~L~e~~~i~vigiPkTIDNDl~~ 131 (301)
T TIGR02482 93 EGLVVIGGDGSYT-----GAQKLYEEGGIPVIGLPGTIDNDIPG 131 (301)
T ss_pred CEEEEeCCchHHH-----HHHHHHHhhCCCEEeecccccCCCcC
Confidence 4678888999875 2234444478998875 5676554
No 334
>PF00205 TPP_enzyme_M: Thiamine pyrophosphate enzyme, central domain; InterPro: IPR012000 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This central domain of TPP enzymes contains a 2-fold Rossman fold. ; GO: 0000287 magnesium ion binding, 0030976 thiamine pyrophosphate binding; PDB: 1OZH_C 1OZF_B 1OZG_B 2Q29_B 2Q28_A 2Q27_B 1OVM_B 1PVD_A 1PYD_B 2VK1_C ....
Probab=22.97 E-value=48 Score=27.73 Aligned_cols=34 Identities=18% Similarity=0.193 Sum_probs=27.7
Q ss_pred CceeEEEeCccccCcchHHHHHHHHHHcCCCEEE
Q 016909 165 DACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIF 198 (380)
Q Consensus 165 ~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~ 198 (380)
.++.+.++|.|.-..|..-|...+|.++++|++-
T Consensus 11 A~rP~il~G~g~~~~~a~~~l~~lae~~~~Pv~~ 44 (137)
T PF00205_consen 11 AKRPVILAGRGARRSGAAEELRELAEKLGIPVAT 44 (137)
T ss_dssp -SSEEEEE-HHHHHTTCHHHHHHHHHHHTSEEEE
T ss_pred CCCEEEEEcCCcChhhHHHHHHHHHHHHCCCEEe
Confidence 3568899999999778888999999999999853
No 335
>TIGR00315 cdhB CO dehydrogenase/acetyl-CoA synthase complex, epsilon subunit. Nomenclature follows the description for Methanosarcina thermophila. The complex is also found in Archaeoglobus fulgidus, not considered a methanogen, but is otherwise generally associated with methanogenesis.
Probab=22.95 E-value=1.3e+02 Score=26.61 Aligned_cols=38 Identities=11% Similarity=0.166 Sum_probs=30.9
Q ss_pred CceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEc
Q 016909 165 DACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRN 202 (380)
Q Consensus 165 ~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~N 202 (380)
.++.+.++|-|+...+...+...+|...++||+.-...
T Consensus 27 AKRPvIivG~ga~~~~a~e~l~~laEklgiPVvtT~~~ 64 (162)
T TIGR00315 27 AKRPLLIVGPENLEDEEKELIVKFIEKFDLPVVATADT 64 (162)
T ss_pred CCCcEEEECCCcCcccHHHHHHHHHHHHCCCEEEcCcc
Confidence 45788889999987777888889999999998876543
No 336
>TIGR01415 trpB_rel pyridoxal-phosphate dependent TrpB-like enzyme. This model represents a family of pyridoxal-phosphate dependent enzyme (pfam00291) closely related to the beta subunit of tryptophan synthase (TIGR00263). However, the only case in which a member of this family replaces a member of TIGR00263 is in Sulfolobus species which contain two sequences which hit this model, one of which is proximal to the alpha subunit. In every other case so far, either the species appears not to make tryptophan (there is no trp synthase alpha subunit), or a trp synthase beta subunit matching TIGR00263 is also found.
Probab=22.70 E-value=7.5e+02 Score=25.26 Aligned_cols=45 Identities=13% Similarity=0.024 Sum_probs=27.8
Q ss_pred HHHH-HHHcCCCEEEEEEcCCcceeeecccccCCcCHHHHHhhcCeeEEEEeCCC
Q 016909 185 ALNF-SAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGND 238 (380)
Q Consensus 185 al~~-A~~~~Lpvi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~G~~~~~VdG~D 238 (380)
++.+ |+.+++++++++-...+..+ +.-....+.||..++.+++..
T Consensus 132 alA~aaa~~Gl~~~V~mp~~s~~~k---------~~k~~~m~~~GA~Vi~~~~~~ 177 (419)
T TIGR01415 132 ALSLAGALFGLECKVFMVRVSFNQK---------PYRKYLMELYGAEVIPSPSEF 177 (419)
T ss_pred HHHHHHHHcCCcEEEEEeCCCcccC---------HHHHHHHHHcCCEEEEECCch
Confidence 4444 45789987766654322111 112356889999999998753
No 337
>cd01467 vWA_BatA_type VWA BatA type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses. In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if
Probab=22.69 E-value=4.9e+02 Score=22.24 Aligned_cols=39 Identities=13% Similarity=0.191 Sum_probs=25.8
Q ss_pred CceeEEEeCccccCcch--HHHHHHHHHHcCCCEEEEEEcC
Q 016909 165 DACAVTYFGDGGTSEGD--FHAALNFSAVTEAPVIFICRNN 203 (380)
Q Consensus 165 ~~~vv~~~GDG~~~eG~--~~Eal~~A~~~~Lpvi~vv~NN 203 (380)
.+.+++++.||..+.|. ..++...+...+++|..|-.-+
T Consensus 102 ~~~~iiliTDG~~~~g~~~~~~~~~~~~~~gi~i~~i~ig~ 142 (180)
T cd01467 102 KERVIVLLTDGENNAGEIDPATAAELAKNKGVRIYTIGVGK 142 (180)
T ss_pred CCCEEEEEeCCCCCCCCCCHHHHHHHHHHCCCEEEEEEecC
Confidence 35789999999877663 3355566666777766555443
No 338
>PRK10886 DnaA initiator-associating protein DiaA; Provisional
Probab=22.61 E-value=2.9e+02 Score=25.12 Aligned_cols=18 Identities=17% Similarity=0.187 Sum_probs=9.3
Q ss_pred HHHHHhhcCeeEEEEeCC
Q 016909 220 AVVKGRAYGVRSIRVDGN 237 (380)
Q Consensus 220 ~~~~a~a~G~~~~~VdG~ 237 (380)
..+.|+..|++++.+.|+
T Consensus 128 a~~~Ak~~G~~vI~IT~~ 145 (196)
T PRK10886 128 AVEAAVTRDMTIVALTGY 145 (196)
T ss_pred HHHHHHHCCCEEEEEeCC
Confidence 344555555555555543
No 339
>PRK00910 ribB 3,4-dihydroxy-2-butanone 4-phosphate synthase; Provisional
Probab=22.46 E-value=2.6e+02 Score=26.05 Aligned_cols=66 Identities=12% Similarity=0.260 Sum_probs=45.6
Q ss_pred CCCceeEEEeCcccc--CcchHHHHHHHHHHcCC-CEEEEEE--cCCcceeeecccccCCcCHHHHHhhcCeeEEEEe
Q 016909 163 RKDACAVTYFGDGGT--SEGDFHAALNFSAVTEA-PVIFICR--NNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVD 235 (380)
Q Consensus 163 ~~~~~vv~~~GDG~~--~eG~~~Eal~~A~~~~L-pvi~vv~--NN~~~i~~~~~~~~~~~~~~~~a~a~G~~~~~Vd 235 (380)
.|+++.....=+|.+ -.|..--++.+|..-++ |+-++|+ |.. ......+++.+.|+.+|++.+.++
T Consensus 134 rPGHvfPL~a~~gGvl~R~GHTEaavdLa~lAGl~p~~vicEil~~d-------G~ma~~~~l~~fA~~h~l~~isi~ 204 (218)
T PRK00910 134 RPGHVFPLRARAGGVLARRGHTEGTVDLMQMAGLQPAGVLCELTNPD-------GTMAKTPEIIAFGKLHNMPVLTIE 204 (218)
T ss_pred CCCccceEEeCCCCEecCCCccHHHHHHHHHcCCCceEEEEEEecCC-------CCcCCHHHHHHHHHHcCCcEEEHH
Confidence 455655555556665 47877788899999999 8666665 221 122344667889999999998765
No 340
>TIGR01204 bioW 6-carboxyhexanoate--CoA ligase. Alternate name: pimeloyl-CoA synthase.
Probab=22.39 E-value=3e+02 Score=25.93 Aligned_cols=74 Identities=23% Similarity=0.276 Sum_probs=44.9
Q ss_pred hHHHHHHHHHH-cCCC-EEE-EEEcC--Ccceeee-cc--cccCCcCHHHHHhhcCeeEEEEeC-CCHHHHHHHHHHHHH
Q 016909 181 DFHAALNFSAV-TEAP-VIF-ICRNN--GWAISTP-IS--DQFRSDGAVVKGRAYGVRSIRVDG-NDALAIYSAVHAARE 251 (380)
Q Consensus 181 ~~~Eal~~A~~-~~Lp-vi~-vv~NN--~~~i~~~-~~--~~~~~~~~~~~a~a~G~~~~~VdG-~D~~av~~a~~~A~~ 251 (380)
.+.|||.+|+. ...| +|. +|... .|-..-- +. .-..-.++.....-.|..++-|++ .|+.++..-++
T Consensus 150 r~~eAlaLAsKV~~~pgvvAElC~SDDP~YtTGYVA~~~~gY~RI~~lK~~G~~~GGRvffv~~~~~l~~~i~yLE---- 225 (232)
T TIGR01204 150 RTVEALALAFKVLFCPAVVAELCWSDDPDYVTGYVSGKEIGYVRITPLKEKGDELGGRVFFVSRKNELSEYIHCLE---- 225 (232)
T ss_pred HHHHHHHHHHHHhcCCCeEEEEEecCCCCCeeEEEEeCCCCeEeCccccccCCCCCCEEEEEeCCCCHHHHHHHHh----
Confidence 68899999985 4567 554 66543 3422111 11 112234455666678999999998 46665544432
Q ss_pred HhhccCCcEEEE
Q 016909 252 MAIGEGRPILIE 263 (380)
Q Consensus 252 ~ar~~~gP~lIe 263 (380)
+.|+||+
T Consensus 226 -----~~pvLI~ 232 (232)
T TIGR01204 226 -----QKPILIE 232 (232)
T ss_pred -----cCcEEeC
Confidence 5899884
No 341
>PF03646 FlaG: FlaG protein; InterPro: IPR005186 Although these proteins are known to be important for flagellar their exact function is unknown.; PDB: 2HC5_A.
Probab=22.34 E-value=36 Score=27.60 Aligned_cols=35 Identities=11% Similarity=0.234 Sum_probs=23.8
Q ss_pred CCCCeeEeeCCC-CCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q 016909 10 ERIPCYRVLDDD-GQPFPDSSFVKVSEGVAIKMYNDMVTLQ 49 (380)
Q Consensus 10 ~~~~~~~~~~~~-g~~~~~~~~~~~~~~~l~~~y~~M~~~R 49 (380)
.....++|+|.+ |.++ ..++.+++++|.+.|....
T Consensus 65 ~~~~vVkViD~~T~eVI-----RqIP~Ee~l~l~~~l~e~~ 100 (107)
T PF03646_consen 65 SGRVVVKVIDKETGEVI-----RQIPPEELLDLAKRLRELV 100 (107)
T ss_dssp TTEEEEEEEETTT-SEE-----EEE-HHHHHHHHHHHHHHH
T ss_pred CCcEEEEEEECCCCcEE-----EeCCcHHHHHHHHHHHHHh
Confidence 344578889875 4443 3689999999998886543
No 342
>PF03437 BtpA: BtpA family; InterPro: IPR005137 Photosystem I (PSI) is a large protein complex embedded within the photosynthetic thylakoid membrane. It consists of 11 subunits, ~100 chlorophyll a molecules, 2 phylloquinones, and 3 Fe4S4-clusters. The three dimensional structure of the PSI complex has been resolved at 2.5 A [], which allows the precise localisation of each cofactor. PSI together with photosystem II (PSII) catalyses the light-induced steps in oxygenic photosynthesis - a process found in cyanobacteria, eukaryotic algae (e.g. red algae, green algae) and higher plants. To date, three thylakoid proteins involved in the stable accumulation of PSI have been identified: BtpA [], Ycf3 [, ], and Ycf4 (IPR003359 from INTERPRO) []. Because translation of the psaA and psaB mRNAs encoding the two reaction centre polypeptides, of PSI and PSII respectively, is not affected in mutant strains lacking functional ycf3 and ycf4, the products of these two genes appear to act at a post-translational step of PSI biosynthesis. These gene products are therefore involved either in the stabilisation or in the assembly of the PSI complex. However, their exact roles remain unknown. The BtpA protein appears to act at the level of PSI stabilisation []. It is an extrinsic membrane protein located on the cytoplasmic side of the thylakoid membrane [, ]. Homologs of BtpA are found in the crenarchaeota and euryarchaeota, where their function remains unknown. The Ycf4 protein is firmly associated with the thylakoid membrane, presumably through a transmembrane domain []. Ycf4 co-fractionates with a protein complex larger than PSI upon sucrose density gradient centrifugation of solubilised thylakoids []. The Ycf3 protein is loosely associated with the thylakoid membrane and can be released from the membrane with sodium carbonate. This suggests that Ycf3 is not part of a stable complex and that it probably interacts transiently with its partners []. Ycf3 contains a number of tetratrico peptide repeats (TPR, IPR001440 from INTERPRO); TPR is a structural motif present in a wide range of proteins, which mediates protein-protein interactions.
Probab=22.10 E-value=3.1e+02 Score=26.16 Aligned_cols=84 Identities=21% Similarity=0.217 Sum_probs=48.5
Q ss_pred HHHHHHH--hhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcceeeecccccCCcCHH-HHHhhcC
Q 016909 152 AVGAAYA--LKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAV-VKGRAYG 228 (380)
Q Consensus 152 AvG~A~A--~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~i~~~~~~~~~~~~~~-~~a~a~G 228 (380)
|+.+|.| .++-+-+..+-+.++|.++-++...|.+..=.+.+..+-++.+=+- --+.+.... +....+ +.++.++
T Consensus 95 alaiA~A~ga~FIRv~~~~g~~~~d~G~~~~~a~e~~r~R~~l~a~v~ilaDV~~-kh~~~l~~~-~~~~~~~~a~~~~~ 172 (254)
T PF03437_consen 95 ALAIAAATGADFIRVNVFVGAYVTDEGIIEGCAGELLRYRKRLGADVKILADVHV-KHSSPLATR-DLEEAAKDAVERGG 172 (254)
T ss_pred HHHHHHHhCCCEEEecCEEceecccCccccccHHHHHHHHHHcCCCeEEEeeech-hhcccCCCC-CHHHHHHHHHHhcC
Confidence 4444444 3333445678888899999889899988887777777444443222 111121111 111222 2335678
Q ss_pred eeEEEEeCC
Q 016909 229 VRSIRVDGN 237 (380)
Q Consensus 229 ~~~~~VdG~ 237 (380)
..++-|.|.
T Consensus 173 aDaviVtG~ 181 (254)
T PF03437_consen 173 ADAVIVTGK 181 (254)
T ss_pred CCEEEECCc
Confidence 899999885
No 343
>TIGR01323 nitrile_alph nitrile hydratase, alpha subunit. This model describes both iron- and cobalt-containing nitrile hydratase alpha chains. It excludes the thiocyanate hydrolase gamma subunit of Thiobacillus thioparus, a sequence that appears to have evolved from within the family of nitrile hydratase alpha subunits but which differs by several indels and a more rapid accumulation of point mutations.
Probab=22.04 E-value=1.3e+02 Score=27.19 Aligned_cols=28 Identities=14% Similarity=0.187 Sum_probs=23.5
Q ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHHH
Q 016909 298 TRFRKWIESNGWWNGDIESELRSSVRKQ 325 (380)
Q Consensus 298 ~~~~~~L~~~g~~t~~~~~~i~~~~~~~ 325 (380)
..++.-|+++|++|.++++.+.+....+
T Consensus 4 ~Ale~ll~eKGli~~~~id~~i~~~~~~ 31 (185)
T TIGR01323 4 KALEQVLKSKGLIPEGAVDQLTSLYENE 31 (185)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHhc
Confidence 4578899999999999999888777664
No 344
>PRK13028 tryptophan synthase subunit beta; Provisional
Probab=22.02 E-value=4.8e+02 Score=26.60 Aligned_cols=71 Identities=18% Similarity=0.153 Sum_probs=40.4
Q ss_pred HHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcceeeecccccCCcCHHHHHhhcCee
Q 016909 151 HAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVR 230 (380)
Q Consensus 151 ~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~G~~ 230 (380)
.++|.++..+..+.+ .+|+-.|.|-. |. .....|+..++++++++-.+.. ..+ ..-..+.+.+|.+
T Consensus 97 ~al~~~l~A~~~G~~-~vI~etgsGnh--G~--A~A~aaa~~Gl~~~I~m~~~d~------~~q---~~nv~~mr~~GAe 162 (402)
T PRK13028 97 NCLGQALLAKRMGKK-RLIAETGAGQH--GV--ATATAAALFGLECEIYMGEVDI------ERQ---HPNVFRMKLLGAE 162 (402)
T ss_pred HHHHHHHHHHHcCCC-eEEEecCcHHH--HH--HHHHHHHHcCCCEEEEECCCcc------hhh---HHHHHHHHHcCCE
Confidence 356666655555543 45555665543 22 1233456789997777643210 111 1123578889999
Q ss_pred EEEEe
Q 016909 231 SIRVD 235 (380)
Q Consensus 231 ~~~Vd 235 (380)
++.|+
T Consensus 163 Vi~v~ 167 (402)
T PRK13028 163 VVPVT 167 (402)
T ss_pred EEEEc
Confidence 99987
No 345
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=21.87 E-value=3.3e+02 Score=23.70 Aligned_cols=19 Identities=16% Similarity=0.230 Sum_probs=13.1
Q ss_pred CHHHHHhhcCeeEEEEeCC
Q 016909 219 GAVVKGRAYGVRSIRVDGN 237 (380)
Q Consensus 219 ~~~~~a~a~G~~~~~VdG~ 237 (380)
+..+.++..|++++.+.++
T Consensus 90 ~~~~~ak~~g~~ii~IT~~ 108 (179)
T TIGR03127 90 TVAKKAKEIGATVAAITTN 108 (179)
T ss_pred HHHHHHHHCCCeEEEEECC
Confidence 4566777777777777654
No 346
>PRK01792 ribB 3,4-dihydroxy-2-butanone 4-phosphate synthase; Provisional
Probab=21.86 E-value=2.9e+02 Score=25.64 Aligned_cols=67 Identities=18% Similarity=0.316 Sum_probs=47.5
Q ss_pred cCCCceeEEEeCcccc--CcchHHHHHHHHHHcCC-CEEEEEE--cCCcceeeecccccCCcCHHHHHhhcCeeEEEEe
Q 016909 162 DRKDACAVTYFGDGGT--SEGDFHAALNFSAVTEA-PVIFICR--NNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVD 235 (380)
Q Consensus 162 ~~~~~~vv~~~GDG~~--~eG~~~Eal~~A~~~~L-pvi~vv~--NN~~~i~~~~~~~~~~~~~~~~a~a~G~~~~~Vd 235 (380)
..|+++..+..-+|.+ -.|...-++.+|..-++ |+-++|+ |.. ......++..+.|+.+|++.+.++
T Consensus 132 ~~PGHvfPL~a~~gGvl~R~GHTEaavdLa~lAGl~p~~vicEil~~d-------G~ma~~~~~~~fA~~~~l~~isi~ 203 (214)
T PRK01792 132 HRPGHVFPLRAANGGVLTRRGHTEAAVDLARLAGYKEAGVICEITNDD-------GTMARTPEIVEFAKKFGYAVVTIE 203 (214)
T ss_pred CCCCccceEEeccCCCccCCChHHHHHHHHHHcCCCceEEEEEEecCC-------CCccCHHHHHHHHHHcCCcEEEHH
Confidence 3566777777777776 47888788889999999 8666665 221 112334567889999999998755
No 347
>PRK06988 putative formyltransferase; Provisional
Probab=21.85 E-value=4e+02 Score=25.96 Aligned_cols=59 Identities=8% Similarity=0.059 Sum_probs=35.7
Q ss_pred eEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcceeeecccccCCcCHHHHHhhcCeeEEEEe
Q 016909 168 AVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVD 235 (380)
Q Consensus 168 vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~G~~~~~Vd 235 (380)
-|+|+|.+.+. ..+|..-...+..++.|+-+..-. .. ......+.++|+..|++++..+
T Consensus 4 kIvf~Gs~~~a----~~~L~~L~~~~~~i~~Vvt~~d~~----~~-~~~~~~v~~~A~~~gip~~~~~ 62 (312)
T PRK06988 4 RAVVFAYHNVG----VRCLQVLLARGVDVALVVTHEDNP----TE-NIWFGSVAAVAAEHGIPVITPA 62 (312)
T ss_pred EEEEEeCcHHH----HHHHHHHHhCCCCEEEEEcCCCCC----cc-CcCCCHHHHHHHHcCCcEEccc
Confidence 47888988874 234444334456777776553211 01 1122357889999999998744
No 348
>COG0498 ThrC Threonine synthase [Amino acid transport and metabolism]
Probab=21.78 E-value=4.4e+02 Score=26.98 Aligned_cols=69 Identities=19% Similarity=0.223 Sum_probs=41.0
Q ss_pred CceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcceeeecccccCCcCHHHHHhhcCeeEEEEeCCCHHHHHH
Q 016909 165 DACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYS 244 (380)
Q Consensus 165 ~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~G~~~~~VdG~D~~av~~ 244 (380)
..++.+..||-+. -.-.+|++.++.+++++=+++.+. .-...+..+|.+++.|+| +.++..+
T Consensus 127 ~~I~~ASSGnTgA------s~aaya~rag~~v~Vl~P~g~vs~-----------~k~~q~~~~ga~~i~v~G-~fDda~~ 188 (411)
T COG0498 127 KTILCASSGNTGA------SAAAYAARAGLKVFVLYPKGKVSP-----------GKLAQMLTLGAHVIAVDG-NFDDAQE 188 (411)
T ss_pred CEEEEeCCchHHH------HHHHHhccCCCeEEEEecCCCCCH-----------HHHHHHHhcCCEEEEEcC-cHHHHHH
Confidence 4455566665542 224467778888877775554321 122345567888888888 3455556
Q ss_pred HHHHHHH
Q 016909 245 AVHAARE 251 (380)
Q Consensus 245 a~~~A~~ 251 (380)
.++++.+
T Consensus 189 ~vk~~~~ 195 (411)
T COG0498 189 LVKEAAN 195 (411)
T ss_pred HHHHHHh
Confidence 6666554
No 349
>cd01822 Lysophospholipase_L1_like Lysophospholipase L1-like subgroup of SGNH-hydrolases. The best characterized member in this family is TesA, an E. coli periplasmic protein with thioesterase, esterase, arylesterase, protease and lysophospholipase activity.
Probab=21.76 E-value=2.6e+02 Score=23.65 Aligned_cols=23 Identities=17% Similarity=0.205 Sum_probs=15.8
Q ss_pred CHHHHHHHHHHHHHHhhccCCcE
Q 016909 238 DALAIYSAVHAAREMAIGEGRPI 260 (380)
Q Consensus 238 D~~av~~a~~~A~~~ar~~~gP~ 260 (380)
++.++...+++.++.+|+.+.++
T Consensus 82 ~~~~~~~~l~~li~~~~~~~~~v 104 (177)
T cd01822 82 PPDQTRANLRQMIETAQARGAPV 104 (177)
T ss_pred CHHHHHHHHHHHHHHHHHCCCeE
Confidence 35677778888888887764333
No 350
>PF04748 Polysacc_deac_2: Divergent polysaccharide deacetylase; InterPro: IPR006837 This is a family of uncharacterised proteins that includes YibQ.; PDB: 2QV5_A 2NLY_A.
Probab=21.72 E-value=3.1e+02 Score=25.21 Aligned_cols=46 Identities=22% Similarity=0.198 Sum_probs=33.7
Q ss_pred HHHHHhhcCeeEEEEe-----CCCHHHHHHHHHHHHHHhhccCCcEEEEEEe
Q 016909 220 AVVKGRAYGVRSIRVD-----GNDALAIYSAVHAAREMAIGEGRPILIEALT 266 (380)
Q Consensus 220 ~~~~a~a~G~~~~~Vd-----G~D~~av~~a~~~A~~~ar~~~gP~lIe~~t 266 (380)
..+.|+.+|+++.+.| -.|..+|.+.++++...||+ +|.++.....
T Consensus 133 a~~~A~~~gvp~~~rdvfLD~~~~~~~I~~ql~~~~~~A~~-~G~aI~Igh~ 183 (213)
T PF04748_consen 133 APQVAKELGVPAARRDVFLDNDQDEAAIRRQLDQAARIARK-QGSAIAIGHP 183 (213)
T ss_dssp HHHHHHHCT--EEE-SEETTST-SHHHHHHHHHHHHHHHHC-CSEEEEEEE-
T ss_pred HHHHHHHcCCCEEeeceecCCCCCHHHHHHHHHHHHHhhhh-cCcEEEEEcC
Confidence 4578999999998865 36889999999999999987 6777776543
No 351
>cd08810 CARD_BCL10 Caspase activation and recruitment domain of B-cell lymphoma 10. Caspase activation and recruitment domain (CARD) similar to that found in BCL10 (B-cell lymphoma 10). BCL10 and Malt1 (mucosa-associated lymphoid tissue-lymphoma-translocation gene 1) are the integral components of CBM signalosomes. They associate with CARD9 to form M-CBM (CBM complex in myeloid immune cells) and with CARMA1 to form L-CBM (CBM complex in lymphoid immune cells), to mediate activation of NF-kB and MAPK by ITAM-coupled receptors expressed on immune cells. Both CARMA1 and CARD9 associate with BCL10 via a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by asso
Probab=21.72 E-value=1.1e+02 Score=24.02 Aligned_cols=26 Identities=15% Similarity=0.162 Sum_probs=21.4
Q ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHH
Q 016909 297 VTRFRKWIESNGWWNGDIESELRSSV 322 (380)
Q Consensus 297 i~~~~~~L~~~g~~t~~~~~~i~~~~ 322 (380)
..++-.+|.++|++|+++.++|...-
T Consensus 18 ~~~l~d~L~s~~ILt~~d~EeI~~~~ 43 (84)
T cd08810 18 ADRHFDYLRSKRILTRDDCEEISCRT 43 (84)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHhccC
Confidence 34588999999999999998887643
No 352
>PF01116 F_bP_aldolase: Fructose-bisphosphate aldolase class-II; InterPro: IPR000771 Fructose-bisphosphate aldolase [, ] is a glycolytic enzyme that catalyses the reversible aldol cleavage or condensation of fructose-1,6-bisphosphate into dihydroxyacetone-phosphate and glyceraldehyde 3-phosphate. There are two classes of fructose-bisphosphate aldolases with different catalytic mechanisms. Class-II aldolases [], mainly found in prokaryotes and fungi, are homodimeric enzymes, which require a divalent metal ion, generally zinc, for their activity. This family also includes the Escherichia coli galactitol operon protein, gatY, which catalyses the transformation of tagatose 1,6-bisphosphate into glycerone phosphate and D-glyceraldehyde 3-phosphate; and E. coli N-acetyl galactosamine operon protein, agaY, which catalyses the same reaction. There are two histidine residues in the first half of the sequence of these enzymes that have been shown to be involved in binding a zinc ion [].; GO: 0008270 zinc ion binding, 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3Q94_A 1RVG_B 1RV8_C 3C4U_A 3C56_B 3C52_A 2FJK_A 3N9R_P 3N9S_A 1GVF_B ....
Probab=21.68 E-value=7.4e+02 Score=23.95 Aligned_cols=124 Identities=13% Similarity=0.114 Sum_probs=74.3
Q ss_pred HHHHHHHHhhhcCCCceeEEEeCccccCcch---HH-HHHHHHHHcCCCEEEEEEcCCcceeeecccccCCcCHHHHHhh
Q 016909 151 HAVGAAYALKMDRKDACAVTYFGDGGTSEGD---FH-AALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRA 226 (380)
Q Consensus 151 ~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~---~~-Eal~~A~~~~Lpvi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a 226 (380)
.+.++-.|.+. .+.++|.-+.-+...... +. -...+|...+.||.+=.|-- ...+...+|-.
T Consensus 29 ~~~avi~AAe~--~~sPvIlq~~~~~~~~~~~~~~~~~~~~~a~~~~vPValHLDH~------------~~~e~i~~ai~ 94 (287)
T PF01116_consen 29 TARAVIEAAEE--LNSPVILQISPSEVKYMGLEYLAAMVKAAAEEASVPVALHLDHG------------KDFEDIKRAID 94 (287)
T ss_dssp HHHHHHHHHHH--TTS-EEEEEEHHHHHHHHHHHHHHHHHHHHHHSTSEEEEEEEEE-------------SHHHHHHHHH
T ss_pred HHHHHHHHHHH--hCCCEEEEcchhhhhhhhHHHHHHHHHHHHHHcCCCEEeecccC------------CCHHHHHHHHH
Confidence 34444444432 245677777666654221 11 12234556778887665421 11345677777
Q ss_pred cCeeEEEEeCC--CHHHHHHHHHHHHHHhhccCCcEEEEEEeecCCCCCCC-C----CCCCCCChhHHHHH
Q 016909 227 YGVRSIRVDGN--DALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTS-D----DSTKYRPVDEIEWW 290 (380)
Q Consensus 227 ~G~~~~~VdG~--D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R~~gHs~~-D----d~~~Yr~~~e~~~~ 290 (380)
.|+.++-+||. +.++=.+..++.+++|+..+ +-||+-.-+..|.... + ....|.++++..++
T Consensus 95 ~GftSVM~DgS~l~~eeNi~~T~~vv~~ah~~g--v~VEaElG~i~g~ed~~~~~~~~~~~~TdP~~a~~F 163 (287)
T PF01116_consen 95 AGFTSVMIDGSALPFEENIAITREVVEYAHAYG--VSVEAELGHIGGKEDGIESEEETESLYTDPEEAKEF 163 (287)
T ss_dssp HTSSEEEEE-TTS-HHHHHHHHHHHHHHHHHTT---EEEEEESBSSSSCTTCSSSTT-TTCSSSHHHHHHH
T ss_pred hCcccccccCCcCCHHHHHHHHHHHHHhhhhhC--CEEEEEeeeeeccCCCccccccccccccCHHHHHHH
Confidence 89999999994 56666777788888887754 8889998888876321 1 14578888887665
No 353
>PF02211 NHase_beta: Nitrile hydratase beta subunit; InterPro: IPR024690 Nitrile hydratases (EC:4.2.1.84) are unusual metalloenzymes that catalyse the hydration of nitriles to their corresponding amides. They are used as biocatalysts in acrylamide production, one of the few commercial scale bioprocesses, as well as in environmental remediation for the removal of nitriles from waste streams. Nitrile hydratases are composed of two subunits, alpha and beta, and they contain one iron atom per alpha beta unit []. This entry represents the structural domain of nitrile hydratase beta subunit which contains irregular array of helices in the N-terminal extension.; GO: 0018822 nitrile hydratase activity; PDB: 2DXB_H 2DD5_K 2DD4_H 2ZZD_B 2DXC_H 1AHJ_F 2ZPE_B 2ZCF_B 2D0Q_B 2CZ7_B ....
Probab=21.46 E-value=1.3e+02 Score=28.06 Aligned_cols=26 Identities=15% Similarity=0.243 Sum_probs=21.2
Q ss_pred HHHHHhCCChHHHHHHHHHHCCCCCHHHHHHH
Q 016909 287 IEWWRTTQDPVTRFRKWIESNGWWNGDIESEL 318 (380)
Q Consensus 287 ~~~~~~~~DPi~~~~~~L~~~g~~t~~~~~~i 318 (380)
+++|- ..+.+.|+++|++|.+|+++.
T Consensus 69 Ye~Wl------~ale~lLvekG~it~~EL~ar 94 (222)
T PF02211_consen 69 YERWL------AALEKLLVEKGVITAEELDAR 94 (222)
T ss_dssp HHHHH------HHHHHHHHHTTSS-HHHHHHH
T ss_pred HHHHH------HHHHHHHHHcCCCCHHHHHHH
Confidence 67783 469999999999999999876
No 354
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=21.28 E-value=2.4e+02 Score=27.17 Aligned_cols=55 Identities=13% Similarity=0.238 Sum_probs=40.0
Q ss_pred cchHHHHHHHHHHcCCCEEEEEEcCCcceeeecccccCCcCHHHHHhhcCeeEEEEe
Q 016909 179 EGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVD 235 (380)
Q Consensus 179 eG~~~Eal~~A~~~~Lpvi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~G~~~~~Vd 235 (380)
.-.+-|-+..|...+.+|++.+..+......+...+. +...++.+..|+.++.||
T Consensus 72 ~~dl~elv~Ya~~KgVgi~lw~~~~~~~~~~~~~~~~--~~~f~~~~~~Gv~GvKid 126 (273)
T PF10566_consen 72 DFDLPELVDYAKEKGVGIWLWYHSETGGNVANLEKQL--DEAFKLYAKWGVKGVKID 126 (273)
T ss_dssp T--HHHHHHHHHHTT-EEEEEEECCHTTBHHHHHCCH--HHHHHHHHHCTEEEEEEE
T ss_pred ccCHHHHHHHHHHcCCCEEEEEeCCcchhhHhHHHHH--HHHHHHHHHcCCCEEeeC
Confidence 3456788889999999999988887754444444442 567788999999999988
No 355
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=21.17 E-value=85 Score=23.69 Aligned_cols=19 Identities=32% Similarity=0.431 Sum_probs=13.0
Q ss_pred HHHHHHhhccCCcEEEEEE
Q 016909 247 HAAREMAIGEGRPILIEAL 265 (380)
Q Consensus 247 ~~A~~~ar~~~gP~lIe~~ 265 (380)
.+|++.|++.++|+||.+.
T Consensus 7 ~~al~~A~~~~kpvlv~f~ 25 (82)
T PF13899_consen 7 EEALAEAKKEGKPVLVDFG 25 (82)
T ss_dssp HHHHHHHHHHTSEEEEEEE
T ss_pred HHHHHHHHHcCCCEEEEEE
Confidence 3444445557999999983
No 356
>KOG0524 consensus Pyruvate dehydrogenase E1, beta subunit [Energy production and conversion]
Probab=20.98 E-value=4.8e+02 Score=25.40 Aligned_cols=23 Identities=26% Similarity=0.137 Sum_probs=18.4
Q ss_pred hhHHHHHHHHhcCCCCcEEEccc
Q 016909 72 GEEAINIASAAAIKNDDFVVPQY 94 (380)
Q Consensus 72 GqEa~~~~~~~~l~~~D~v~~~y 94 (380)
=.||..-++..-|+.+|.||.+-
T Consensus 37 vreALn~amdEEm~rD~~VfvmG 59 (359)
T KOG0524|consen 37 VREALNQAMDEEMDRDPRVFVMG 59 (359)
T ss_pred HHHHHHHHHHHHhccCCcEEEec
Confidence 35888888888898888888653
No 357
>PRK04346 tryptophan synthase subunit beta; Validated
Probab=20.72 E-value=5.4e+02 Score=26.15 Aligned_cols=71 Identities=18% Similarity=0.190 Sum_probs=41.0
Q ss_pred HHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcceeeecccccCCcCHHHHHhhcCee
Q 016909 151 HAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVR 230 (380)
Q Consensus 151 ~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~G~~ 230 (380)
.++|.++..+..+.+ .+|+-.|-|-. |. .....|+..++++++++-.+. ...+. .-..+.+.+|.+
T Consensus 93 ~al~~~l~A~~~Gk~-~vIaetgaGnh--G~--A~A~~aa~~Gl~c~I~mp~~d------~~rq~---~nv~~m~~lGA~ 158 (397)
T PRK04346 93 NVLGQALLAKRMGKK-RIIAETGAGQH--GV--ATATAAALLGLECVIYMGAED------VERQA---LNVFRMKLLGAE 158 (397)
T ss_pred HHHHHHHHHHHcCCC-eEEEecCcHHH--HH--HHHHHHHHcCCcEEEEecCCc------hhhhh---hHHHHHHHCCCE
Confidence 466777766655543 45555665543 32 123345678999777764331 01111 113567889999
Q ss_pred EEEEe
Q 016909 231 SIRVD 235 (380)
Q Consensus 231 ~~~Vd 235 (380)
++.|+
T Consensus 159 Vv~v~ 163 (397)
T PRK04346 159 VVPVT 163 (397)
T ss_pred EEEEC
Confidence 99987
No 358
>PF04695 Pex14_N: Peroxisomal membrane anchor protein (Pex14p) conserved region; InterPro: IPR006785 This conserved region defines a group of peroxisomal membrane anchor proteins which bind the PTS1 (peroxisomal targeting signal) receptor and are required for the import of PTS1-containing proteins into peroxisomes. Loss of functional Pex14p results in defects in both the PTS1 and PTS2-dependent import pathways. Deletion analysis of this conserved region implicates it in selective peroxisome degradation. In the majority of members this region is situated at the N terminus of the protein [, ].; GO: 0005777 peroxisome, 0016020 membrane; PDB: 2W85_A 2W84_A 3FF5_B.
Probab=20.61 E-value=1.6e+02 Score=25.17 Aligned_cols=32 Identities=16% Similarity=0.213 Sum_probs=21.6
Q ss_pred CChHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
Q 016909 294 QDPVTRFRKWIESNGWWNGDIESELRSSVRKQI 326 (380)
Q Consensus 294 ~DPi~~~~~~L~~~g~~t~~~~~~i~~~~~~~v 326 (380)
.-|+.+=.++|..+| +|++||++.-.++....
T Consensus 20 ~sp~~~k~~FL~sKG-Lt~~EI~~al~~a~~~~ 51 (136)
T PF04695_consen 20 NSPLEKKIAFLESKG-LTEEEIDEALGRAGSPP 51 (136)
T ss_dssp CS-HHHHHHHHHHCT---HHHHHHHHHHHT--S
T ss_pred cCCHHHHHHHHHcCC-CCHHHHHHHHHhcCCcc
Confidence 457777889999999 59998887777666554
No 359
>TIGR00655 PurU formyltetrahydrofolate deformylase. This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.
Probab=20.47 E-value=7.7e+02 Score=23.70 Aligned_cols=54 Identities=7% Similarity=0.035 Sum_probs=35.8
Q ss_pred CCceeEEEeCccccCcchHHHHHHHHHHcC-CC--EEEEEEcCCcceeeecccccCCcCHHHHHhhcCeeEEEEeC
Q 016909 164 KDACAVTYFGDGGTSEGDFHAALNFSAVTE-AP--VIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDG 236 (380)
Q Consensus 164 ~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~-Lp--vi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~G~~~~~VdG 236 (380)
+.+++|...|-|+. .+++--+...+ || ++.|+.||. +...+|+.+|+|++.++-
T Consensus 84 ~~ki~vl~Sg~g~n-----l~~l~~~~~~g~l~~~i~~visn~~--------------~~~~~A~~~gIp~~~~~~ 140 (280)
T TIGR00655 84 LKRVAILVSKEDHC-----LGDLLWRWYSGELDAEIALVISNHE--------------DLRSLVERFGIPFHYIPA 140 (280)
T ss_pred CcEEEEEEcCCChh-----HHHHHHHHHcCCCCcEEEEEEEcCh--------------hHHHHHHHhCCCEEEcCC
Confidence 34567777776554 45566665543 44 788887762 344578999999998874
No 360
>PF00619 CARD: Caspase recruitment domain; InterPro: IPR001315 The caspase recruitment domain domain (CARD) is a homotypic protein interaction module composed of a bundle of six alpha-helices. CARD is related in sequence and structure to the death domain (DD, see IPR000488 from INTERPRO) and the death effector domain (DED, see IPR001875 from INTERPRO), which work in similar pathways and show similar interaction properties []. The CARD domain typically associates with other CARD-containing proteins, forming either dimers or trimers. CARD domains can be found in isolation, or in combination with other domains. Domains associated with CARD include: NACHT (IPR007111 from INTERPRO) (in Nal1 and Bir1), NB-ARC (IPR002182 from INTERPRO) (in Apaf-1), pyrin/dapin domains (IPR004020 from INTERPRO) (in Nal1), leucine-rich repeats () (in Nal1), WD repeats (IPR001680 from INTERPRO) (in Apaf1), Src homology domains (IPR001452 from INTERPRO), PDZ (IPR001478 from INTERPRO), RING, kinase and DD domains []. CARD-containing proteins are involved in apoptosis through their regulation of caspases that contain CARDs in their N-terminal pro-domains, including human caspases 1, 2, 9, 11 and 12 []. CARD-containing proteins are also involved in inflammation through their regulation of NF-kappaB []. The mechanisms by which CARDs activate caspases and NF-kappaB involve the assembly of multi-protein complexes, which can facilitate dimerisation or serve as scaffolds on which proteases and kinases are assembled and activated.; GO: 0005515 protein binding, 0042981 regulation of apoptosis, 0005622 intracellular; PDB: 2NSN_A 2NZ7_B 2DBD_A 4E9M_C 2B1W_A 3YGS_P 2KN6_A 3CRD_A 1DGN_A 3KAT_A ....
Probab=20.47 E-value=1.4e+02 Score=22.53 Aligned_cols=25 Identities=20% Similarity=0.210 Sum_probs=21.8
Q ss_pred hHHHHHHHHHHCCCCCHHHHHHHHH
Q 016909 296 PVTRFRKWIESNGWWNGDIESELRS 320 (380)
Q Consensus 296 Pi~~~~~~L~~~g~~t~~~~~~i~~ 320 (380)
-+..+-.+|.++|++|+++.+.|..
T Consensus 17 ~~~~ild~L~~~~vlt~~e~e~I~~ 41 (85)
T PF00619_consen 17 DLDDILDHLLSRGVLTEEEYEEIRS 41 (85)
T ss_dssp HHHHHHHHHHHTTSSSHHHHHHHHT
T ss_pred cHHHHHHHHHHCCCCCHHHHHHHHc
Confidence 3566788999999999999999977
No 361
>PRK08329 threonine synthase; Validated
Probab=20.37 E-value=3.9e+02 Score=26.35 Aligned_cols=38 Identities=18% Similarity=0.165 Sum_probs=26.4
Q ss_pred HHHHcCCCEEEEEEcCCcceeeecccccCCcCHHHHHhhcCeeEEEEeCC
Q 016909 188 FSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGN 237 (380)
Q Consensus 188 ~A~~~~Lpvi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~G~~~~~VdG~ 237 (380)
.|+..++|+++++-.+- ...-....+.||.+++.|+|.
T Consensus 122 ~aa~~G~~~~v~vp~~~------------~~~k~~~~~~~GA~v~~v~~~ 159 (347)
T PRK08329 122 YSLSEGIKVHVFVSYNA------------SKEKISLLSRLGAELHFVEGD 159 (347)
T ss_pred HHHHcCCcEEEEECCCC------------hHHHHHHHHHcCCEEEEECCC
Confidence 45678999887765431 112335678899999999985
No 362
>cd01452 VWA_26S_proteasome_subunit 26S proteasome plays a major role in eukaryotic protein breakdown, especially for ubiquitin-tagged proteins. It is an ATP-dependent protease responsible for the bulk of non-lysosomal proteolysis in eukaryotes, often using covalent modification of proteins by ubiquitylation. It consists of a 20S proteolytic core particle (CP) and a 19S regulatory particle (RP). The CP is an ATP independent peptidase consisting of hydrolyzing activities. One or both ends of CP carry the RP that confers both ubiquitin and ATP dependence to the 26S proteosome. The RP's proposed functions include recognition of substrates and translocation of these to CP for proteolysis. The RP can dissociate into a stable lid and base subcomplexes. The base is composed of three non-ATPase subunits (Rpn 1, 2 and 10). A single residue in the vWA domain of Rpn10 has been implicated to be responsible for stabilizing the lid-base association.
Probab=20.36 E-value=2.1e+02 Score=25.91 Aligned_cols=35 Identities=17% Similarity=0.132 Sum_probs=24.3
Q ss_pred ceeEEEeCcc-ccCcchHHHHHHHHHHcCCCEEEEE
Q 016909 166 ACAVTYFGDG-GTSEGDFHAALNFSAVTEAPVIFIC 200 (380)
Q Consensus 166 ~~vv~~~GDG-~~~eG~~~Eal~~A~~~~Lpvi~vv 200 (380)
..+++|+|++ +..+|.++++...+...++.+-+|.
T Consensus 108 ~rivi~v~S~~~~d~~~i~~~~~~lkk~~I~v~vI~ 143 (187)
T cd01452 108 QRIVAFVGSPIEEDEKDLVKLAKRLKKNNVSVDIIN 143 (187)
T ss_pred ceEEEEEecCCcCCHHHHHHHHHHHHHcCCeEEEEE
Confidence 3667777776 6678888887777777777655553
No 363
>PRK01322 6-carboxyhexanoate--CoA ligase; Provisional
Probab=20.33 E-value=3.8e+02 Score=25.42 Aligned_cols=76 Identities=25% Similarity=0.343 Sum_probs=45.6
Q ss_pred hHHHHHHHHHHcC-CC-EEE-EEEcC--Ccceeee-cc--cccCCcCHHHHHhhcCeeEEEEeCC-CHHHHHHHHHHHHH
Q 016909 181 DFHAALNFSAVTE-AP-VIF-ICRNN--GWAISTP-IS--DQFRSDGAVVKGRAYGVRSIRVDGN-DALAIYSAVHAARE 251 (380)
Q Consensus 181 ~~~Eal~~A~~~~-Lp-vi~-vv~NN--~~~i~~~-~~--~~~~~~~~~~~a~a~G~~~~~VdG~-D~~av~~a~~~A~~ 251 (380)
.+.|||.+|+.-- -| +|. +|..+ .|-..-- +. .-..-.++.+...-.|..++-|++. |++++..-+
T Consensus 157 r~~eAlaLAsKV~~~pgivAElC~SDDP~YtTGYVA~~~~gY~RI~~mK~~G~~~GGRvffv~~~~~~~~~i~yL----- 231 (242)
T PRK01322 157 RTVDALALASKVIAHPGVIAELCWSDDPDYTTGYVATKKLGYHRITNLKEEGTPYGGRIFFVDDSIDLEELISYL----- 231 (242)
T ss_pred HHHHHHHHHHHHhcCCCeEEEEEecCCCCCeeEEEEeCCCCeEeCccccccCCCCCCEEEEEeCccCHHHHHHHH-----
Confidence 5889999998644 46 554 66433 3422111 11 1223345666677789999999985 544443322
Q ss_pred HhhccCCcEEEEEE
Q 016909 252 MAIGEGRPILIEAL 265 (380)
Q Consensus 252 ~ar~~~gP~lIe~~ 265 (380)
.+.|+||...
T Consensus 232 ----E~~pVLI~~~ 241 (242)
T PRK01322 232 ----ENKPVLIVYE 241 (242)
T ss_pred ----hcCcEEEEec
Confidence 2589999764
No 364
>PF05014 Nuc_deoxyrib_tr: Nucleoside 2-deoxyribosyltransferase; InterPro: IPR007710 Nucleoside 2-deoxyribosyltransferase (2.4.2.6 from EC) catalyses the cleavage of the glycosidic bonds of 2-deoxyribonucleosides. Nucleoside 2-deoxyribosyltransferases can be divided into two groups based on their substrate specificity: class I enzymes are specific for the transfer of deoxyribose between two purines, while class II enzymes will transfer the deoxyribose between either purines or pyrimidines. The structure of the class I [] and class II [] enzymes are very similar. In class I enzymes, the purine base shields the active site from solvent, which the smaller pyrimidine base cannot do, while in class II enzymes the active site is shielded by a loop (residues 48-62). Both classes of enzymes are found in various Lactobacillus species and participate in nucleoside recycling in these microorganisms. This entry represents both classes of enzymes.; GO: 0050144 nucleoside deoxyribosyltransferase activity, 0070694 deoxyribonucleoside 5'-monophosphate N-glycosidase activity, 0009159 deoxyribonucleoside monophosphate catabolic process; PDB: 1S2L_A 1S2D_C 1S2I_A 1S3F_B 1S2G_C 2A0K_A 2F67_A 2F64_B 2F62_A 2F2T_A ....
Probab=20.11 E-value=1.7e+02 Score=23.60 Aligned_cols=39 Identities=13% Similarity=0.225 Sum_probs=26.3
Q ss_pred ceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCc
Q 016909 166 ACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGW 205 (380)
Q Consensus 166 ~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~ 205 (380)
..+|+.+.+-....|..+| +-+|...+.||+.++.+...
T Consensus 63 D~via~l~~~~~d~Gt~~E-lG~A~algkpv~~~~~d~~~ 101 (113)
T PF05014_consen 63 DIVIANLDGFRPDSGTAFE-LGYAYALGKPVILLTEDDRP 101 (113)
T ss_dssp SEEEEEECSSS--HHHHHH-HHHHHHTTSEEEEEECCCCT
T ss_pred CEEEEECCCCCCCCcHHHH-HHHHHHCCCEEEEEEcCCcc
Confidence 3455555443456677777 77888888999999887665
No 365
>PRK00124 hypothetical protein; Validated
Probab=20.03 E-value=1.8e+02 Score=25.43 Aligned_cols=35 Identities=11% Similarity=0.096 Sum_probs=28.9
Q ss_pred EEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcc
Q 016909 169 VTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWA 206 (380)
Q Consensus 169 v~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~ 206 (380)
|.+=+|+|- .-.|....|..+++|+++|+.-|.+-
T Consensus 3 I~VDADACP---Vk~~i~r~a~r~~i~v~~Vas~n~~~ 37 (151)
T PRK00124 3 IYVDADACP---VKDIIIRVAERHGIPVTLVASFNHFL 37 (151)
T ss_pred EEEECCCCc---HHHHHHHHHHHHCCeEEEEEeCCccc
Confidence 567788886 56688889999999999999888763
Done!