Query 016909
Match_columns 380
No_of_seqs 269 out of 2399
Neff 7.2
Searched_HMMs 29240
Date Mon Mar 25 05:48:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016909.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016909hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2bfd_A 2-oxoisovalerate dehydr 100.0 6.7E-84 2.3E-88 646.2 38.9 379 1-379 20-398 (400)
2 1qs0_A 2-oxoisovalerate dehydr 100.0 8.8E-81 3E-85 623.9 38.0 349 12-362 51-406 (407)
3 1w85_A Pyruvate dehydrogenase 100.0 2.1E-79 7.2E-84 607.5 38.1 349 10-368 18-367 (368)
4 1umd_A E1-alpha, 2-OXO acid de 100.0 2.1E-76 7.2E-81 586.8 40.2 355 10-366 11-366 (367)
5 2ozl_A PDHE1-A type I, pyruvat 100.0 4.9E-76 1.7E-80 582.2 36.0 322 29-354 27-349 (365)
6 2yic_A 2-oxoglutarate decarbox 100.0 2.7E-60 9.4E-65 512.1 24.6 344 31-379 113-500 (868)
7 2xt6_A 2-oxoglutarate decarbox 100.0 2.6E-59 8.8E-64 515.5 26.0 344 31-379 358-745 (1113)
8 2jgd_A 2-oxoglutarate dehydrog 100.0 3.4E-58 1.2E-62 498.3 24.7 362 12-377 170-571 (933)
9 2o1s_A 1-deoxy-D-xylulose-5-ph 100.0 1.3E-32 4.3E-37 289.9 18.2 240 13-275 6-291 (621)
10 1gpu_A Transketolase; transfer 100.0 1.1E-30 3.8E-35 277.3 27.3 200 87-297 60-281 (680)
11 3rim_A Transketolase, TK; TPP, 100.0 1.6E-30 5.6E-35 275.2 27.8 181 87-277 76-278 (700)
12 1r9j_A Transketolase; domains, 100.0 2.7E-30 9.3E-35 273.8 28.5 195 88-292 60-277 (673)
13 2e6k_A Transketolase; structur 100.0 3.2E-31 1.1E-35 280.3 20.5 198 88-298 62-282 (651)
14 3mos_A Transketolase, TK; thia 100.0 8.3E-30 2.8E-34 267.7 25.9 233 32-279 4-253 (616)
15 1itz_A Transketolase; calvin c 100.0 6.9E-29 2.3E-33 263.3 27.2 245 31-291 9-288 (675)
16 2o1x_A 1-deoxy-D-xylulose-5-ph 100.0 1.1E-30 3.7E-35 275.5 11.9 224 28-273 20-294 (629)
17 2r8o_A Transketolase 1, TK 1; 100.0 1.1E-28 3.9E-33 261.5 23.9 196 87-292 57-275 (669)
18 3l84_A Transketolase; TKT, str 100.0 1.2E-27 4.2E-32 251.2 31.0 218 47-278 12-252 (632)
19 3uk1_A Transketolase; structur 100.0 2E-28 6.8E-33 259.9 24.9 193 87-290 98-313 (711)
20 3m49_A Transketolase; alpha-be 100.0 6.2E-28 2.1E-32 255.5 28.3 195 86-290 82-299 (690)
21 3kom_A Transketolase; rossmann 100.0 1.2E-27 4.1E-32 252.7 29.8 194 86-289 58-274 (663)
22 2qtc_A Pyruvate dehydrogenase 99.9 3.8E-26 1.3E-30 247.0 23.3 248 34-291 73-421 (886)
23 4feg_A Pyruvate oxidase; carba 99.9 4.8E-24 1.6E-28 223.8 11.7 164 141-315 418-597 (603)
24 3ahc_A Phosphoketolase, xylulo 99.8 7.1E-19 2.4E-23 187.7 16.9 140 127-270 159-322 (845)
25 1v5e_A Pyruvate oxidase; oxido 99.7 9.4E-17 3.2E-21 168.0 11.5 121 141-270 411-541 (590)
26 2pan_A Glyoxylate carboligase; 99.7 9.5E-17 3.2E-21 168.7 9.2 122 141-270 440-582 (616)
27 2uz1_A Benzaldehyde lyase; thi 99.6 2.2E-16 7.4E-21 164.2 9.8 117 142-268 418-546 (563)
28 2vk8_A Pyruvate decarboxylase 99.6 6.8E-17 2.3E-21 168.0 5.5 121 141-268 411-542 (563)
29 1q6z_A BFD, BFDC, benzoylforma 99.6 2.6E-16 8.8E-21 162.4 8.5 114 143-268 401-525 (528)
30 1ozh_A ALS, acetolactate synth 99.6 2.5E-16 8.5E-21 164.0 8.3 116 141-268 418-543 (566)
31 2iht_A Carboxyethylarginine sy 99.6 3.9E-16 1.3E-20 162.7 8.7 116 141-268 434-561 (573)
32 1t9b_A Acetolactate synthase, 99.6 6.4E-16 2.2E-20 164.1 9.4 118 141-270 511-639 (677)
33 2pgn_A Cyclohexane-1,2-dione h 99.6 3.5E-16 1.2E-20 163.6 7.1 118 142-271 423-550 (589)
34 3eya_A Pyruvate dehydrogenase 99.6 1.4E-15 4.6E-20 157.8 11.3 118 141-270 404-531 (549)
35 2vbf_A Branched-chain alpha-ke 99.6 1.2E-15 4E-20 158.9 9.5 117 141-268 423-551 (570)
36 1ybh_A Acetolactate synthase, 99.6 2.3E-15 7.9E-20 157.4 11.1 119 141-271 424-561 (590)
37 2vbi_A Pyruvate decarboxylase; 99.6 1.2E-15 3.9E-20 158.9 8.5 117 141-268 407-533 (566)
38 2nxw_A Phenyl-3-pyruvate decar 99.6 1.3E-15 4.4E-20 158.6 8.1 115 142-268 421-542 (565)
39 2wvg_A PDC, pyruvate decarboxy 99.6 2.3E-15 8E-20 156.6 9.9 117 141-268 411-541 (568)
40 2c31_A Oxalyl-COA decarboxylas 99.6 4E-15 1.4E-19 154.9 11.4 117 140-269 423-548 (568)
41 1ovm_A Indole-3-pyruvate decar 99.6 1E-15 3.5E-20 158.6 6.6 116 141-268 406-532 (552)
42 2q28_A Oxalyl-COA decarboxylas 99.6 8E-15 2.7E-19 152.4 11.8 118 140-270 418-546 (564)
43 2x7j_A 2-succinyl-5-enolpyruvy 99.5 4.1E-15 1.4E-19 156.0 4.7 114 142-268 454-580 (604)
44 3hww_A 2-succinyl-5-enolpyruvy 99.5 2.2E-14 7.6E-19 148.9 7.2 114 141-268 415-539 (556)
45 3lq1_A 2-succinyl-5-enolpyruvy 99.5 4.1E-14 1.4E-18 147.6 6.3 111 145-269 438-561 (578)
46 2c42_A Pyruvate-ferredoxin oxi 98.9 2.7E-09 9.3E-14 119.5 10.5 99 165-269 953-1071(1231)
47 2iht_A Carboxyethylarginine sy 94.7 0.12 4.2E-06 53.1 10.1 109 150-267 62-171 (573)
48 1ybh_A Acetolactate synthase, 94.6 0.12 4E-06 53.5 9.7 108 149-266 63-171 (590)
49 2uz1_A Benzaldehyde lyase; thi 94.5 0.15 5E-06 52.4 10.2 109 149-267 54-164 (563)
50 1ozh_A ALS, acetolactate synth 94.5 0.13 4.3E-06 53.0 9.7 108 150-267 62-170 (566)
51 2pgn_A Cyclohexane-1,2-dione h 94.3 0.2 6.9E-06 51.7 10.7 107 150-267 57-165 (589)
52 2vbi_A Pyruvate decarboxylase; 93.8 0.21 7E-06 51.3 9.6 109 149-266 54-168 (566)
53 2wvg_A PDC, pyruvate decarboxy 93.7 0.25 8.4E-06 50.7 10.1 110 149-267 54-169 (568)
54 3eya_A Pyruvate dehydrogenase 93.6 0.2 6.9E-06 51.2 9.1 107 150-266 55-161 (549)
55 1t9b_A Acetolactate synthase, 93.6 0.21 7.2E-06 52.6 9.4 107 149-265 133-240 (677)
56 2q28_A Oxalyl-COA decarboxylas 93.5 0.19 6.6E-06 51.4 8.8 109 150-266 59-168 (564)
57 2nxw_A Phenyl-3-pyruvate decar 93.5 0.2 7E-06 51.4 8.9 110 150-267 73-186 (565)
58 1yd7_A 2-keto acid:ferredoxin 93.2 0.09 3.1E-06 51.8 5.4 113 148-273 76-192 (395)
59 2c31_A Oxalyl-COA decarboxylas 93.1 0.21 7.2E-06 51.2 8.3 109 150-266 61-170 (568)
60 1v5e_A Pyruvate oxidase; oxido 93.0 0.19 6.6E-06 51.9 7.8 107 149-266 56-163 (590)
61 3kom_A Transketolase; rossmann 92.9 0.41 1.4E-05 50.3 10.2 102 148-263 415-518 (663)
62 4feg_A Pyruvate oxidase; carba 92.5 0.21 7.1E-06 51.8 7.3 107 150-266 64-170 (603)
63 2o1s_A 1-deoxy-D-xylulose-5-ph 92.5 0.24 8.3E-06 51.6 7.8 103 148-264 373-476 (621)
64 3mos_A Transketolase, TK; thia 92.3 0.54 1.9E-05 48.9 10.1 100 149-263 368-469 (616)
65 3l84_A Transketolase; TKT, str 92.2 0.5 1.7E-05 49.4 9.8 101 148-263 394-496 (632)
66 2pan_A Glyoxylate carboligase; 92.2 0.57 1.9E-05 48.5 10.2 108 150-266 79-187 (616)
67 3m49_A Transketolase; alpha-be 91.8 0.66 2.2E-05 49.0 10.2 102 148-263 439-542 (690)
68 2e6k_A Transketolase; structur 91.7 0.63 2.2E-05 48.7 9.9 102 149-264 410-513 (651)
69 1qs0_B 2-oxoisovalerate dehydr 91.7 0.35 1.2E-05 46.3 7.4 101 147-265 63-174 (338)
70 2r8o_A Transketolase 1, TK 1; 91.7 0.77 2.6E-05 48.2 10.5 101 149-263 415-517 (669)
71 2x7j_A 2-succinyl-5-enolpyruvy 91.3 0.3 1E-05 50.6 6.9 108 150-267 83-198 (604)
72 1itz_A Transketolase; calvin c 91.2 0.87 3E-05 47.9 10.4 102 149-264 427-531 (675)
73 2ozl_B PDHE1-B, pyruvate dehyd 91.0 0.49 1.7E-05 45.6 7.6 99 148-264 74-183 (341)
74 2vk8_A Pyruvate decarboxylase 90.9 0.59 2E-05 47.8 8.5 109 149-266 55-169 (563)
75 1gpu_A Transketolase; transfer 90.4 0.85 2.9E-05 48.0 9.4 101 149-263 422-525 (680)
76 2vbf_A Branched-chain alpha-ke 90.3 0.8 2.7E-05 46.9 8.9 109 149-267 76-190 (570)
77 1q6z_A BFD, BFDC, benzoylforma 90.2 0.38 1.3E-05 48.8 6.3 110 149-267 51-161 (528)
78 1ik6_A Pyruvate dehydrogenase; 89.9 1 3.4E-05 43.9 8.7 99 148-264 110-219 (369)
79 2o1x_A 1-deoxy-D-xylulose-5-ph 89.6 0.45 1.5E-05 49.6 6.4 102 148-264 376-478 (629)
80 3lq1_A 2-succinyl-5-enolpyruvy 89.5 0.54 1.9E-05 48.3 6.9 109 150-266 63-177 (578)
81 1r9j_A Transketolase; domains, 89.3 1.6 5.5E-05 45.9 10.4 101 149-263 415-517 (673)
82 3rim_A Transketolase, TK; TPP, 89.1 1.5 5.1E-05 46.3 10.0 101 149-263 445-549 (700)
83 3uk1_A Transketolase; structur 88.8 1.5 5.2E-05 46.4 9.8 100 149-263 461-562 (711)
84 1ovm_A Indole-3-pyruvate decar 88.5 1.1 3.8E-05 45.5 8.4 109 149-267 56-170 (552)
85 1umd_B E1-beta, 2-OXO acid deh 85.7 4.1 0.00014 38.5 10.1 98 148-263 63-171 (324)
86 1w85_B Pyruvate dehydrogenase 84.1 2.6 9E-05 39.9 7.9 98 147-263 61-170 (324)
87 2bfd_B 2-oxoisovalerate dehydr 82.2 3.5 0.00012 39.4 8.0 100 148-264 79-189 (342)
88 3hww_A 2-succinyl-5-enolpyruvy 81.0 2.3 8E-05 43.3 6.6 107 150-266 60-170 (556)
89 2c42_A Pyruvate-ferredoxin oxi 79.2 8.4 0.00029 43.3 10.7 110 149-273 67-178 (1231)
90 2yic_A 2-oxoglutarate decarbox 72.2 7.7 0.00026 41.9 7.8 107 148-263 596-708 (868)
91 3ibs_A Conserved hypothetical 71.6 17 0.0006 31.1 8.9 71 165-235 111-196 (218)
92 2jgd_A 2-oxoglutarate dehydrog 71.6 6.5 0.00022 42.8 7.1 102 148-263 664-776 (933)
93 2xt6_A 2-oxoglutarate decarbox 71.2 7.8 0.00027 43.0 7.7 107 148-263 841-953 (1113)
94 2zzd_B Thiocyanate hydrolase s 59.6 13 0.00044 31.6 5.2 37 287-329 109-145 (157)
95 4hhu_A OR280; engineered prote 50.1 86 0.0029 25.2 8.2 35 226-260 81-115 (170)
96 4hhu_A OR280; engineered prote 44.7 33 0.0011 27.6 5.0 33 228-260 2-34 (170)
97 2kl8_A OR15; structural genomi 40.8 36 0.0012 24.3 4.2 29 232-260 5-33 (85)
98 2w84_A Peroxisomal membrane pr 37.0 38 0.0013 24.7 3.9 23 294-317 32-54 (70)
99 1pyo_A Caspase-2; apoptosis, c 36.5 85 0.0029 26.5 6.8 71 196-266 35-109 (167)
100 3ff5_A PEX14P, peroxisomal bio 34.8 43 0.0015 23.1 3.7 25 294-319 27-51 (54)
101 1use_A VAsp, vasodilator-stimu 34.0 73 0.0025 21.1 4.5 18 285-304 7-24 (45)
102 3c5c_A RAS-like protein 12; GD 30.2 1.8E+02 0.0063 23.7 8.0 59 192-254 126-185 (187)
103 4ds3_A Phosphoribosylglycinami 29.1 1.7E+02 0.0058 25.6 7.7 82 165-267 8-95 (209)
104 3kcq_A Phosphoribosylglycinami 29.0 96 0.0033 27.4 6.1 56 164-236 8-66 (215)
105 3hht_B NitrIle hydratase beta 28.1 1.1E+02 0.0038 27.4 6.3 29 287-321 73-101 (229)
106 2h54_A Caspase-1; allosteric s 27.8 1E+02 0.0035 26.3 5.9 69 195-264 44-114 (178)
107 2p1h_A APAF-1, apoptotic prote 27.5 36 0.0012 25.6 2.6 34 297-331 24-57 (94)
108 3hbm_A UDP-sugar hydrolase; PS 25.6 1.8E+02 0.006 26.6 7.5 71 169-240 3-81 (282)
109 3av3_A Phosphoribosylglycinami 25.6 2.4E+02 0.0081 24.5 8.0 82 166-267 5-91 (212)
110 1abz_A Alpha-T-alpha, ATA; de 25.5 59 0.002 20.1 2.7 27 301-327 12-38 (40)
111 2pju_A Propionate catabolism o 25.2 1.3E+02 0.0043 26.7 6.2 83 168-256 108-198 (225)
112 3t5g_A GTP-binding protein RHE 25.1 1.9E+02 0.0066 23.0 7.1 61 192-256 110-170 (181)
113 3tqr_A Phosphoribosylglycinami 24.7 2.1E+02 0.0071 25.1 7.5 81 166-267 7-92 (215)
114 3cf4_G Acetyl-COA decarboxylas 22.7 65 0.0022 27.0 3.6 33 166-198 35-67 (170)
115 1m3s_A Hypothetical protein YC 22.7 1.5E+02 0.005 24.5 6.0 18 220-237 98-115 (186)
116 1x0u_A Hypothetical methylmalo 22.6 75 0.0026 32.1 4.6 40 166-205 91-138 (522)
117 1on3_A Methylmalonyl-COA carbo 22.6 85 0.0029 31.7 5.0 41 165-205 94-142 (523)
118 1jeo_A MJ1247, hypothetical pr 22.1 1.9E+02 0.0064 23.7 6.5 34 166-201 84-117 (180)
119 3tbh_A O-acetyl serine sulfhyd 21.8 3.1E+02 0.011 25.3 8.6 42 184-237 85-127 (334)
120 2x24_A Acetyl-COA carboxylase; 21.8 48 0.0017 35.3 3.0 44 164-207 119-170 (793)
121 2q5c_A NTRC family transcripti 21.7 1.6E+02 0.0054 25.3 6.0 84 168-256 96-187 (196)
122 3da8_A Probable 5'-phosphoribo 21.7 3.3E+02 0.011 23.8 8.2 80 166-267 14-98 (215)
123 3oes_A GTPase rhebl1; small GT 21.0 3.4E+02 0.012 22.1 8.2 58 193-254 129-186 (201)
124 3sho_A Transcriptional regulat 20.8 2E+02 0.007 23.6 6.5 80 144-238 44-124 (187)
125 1ugp_B NitrIle hydratase beta 20.8 1E+02 0.0034 27.6 4.5 31 287-323 69-99 (226)
126 3ahc_A Phosphoketolase, xylulo 20.7 4.9E+02 0.017 27.8 10.6 100 149-263 503-622 (845)
127 3o1l_A Formyltetrahydrofolate 20.6 3E+02 0.01 25.5 8.0 53 164-235 105-160 (302)
128 1qtn_A Caspase-8; apoptosis, d 20.4 2.1E+02 0.0072 23.9 6.3 48 218-266 58-105 (164)
129 2xhz_A KDSD, YRBH, arabinose 5 20.4 1.9E+02 0.0064 23.7 6.1 19 219-237 114-132 (183)
130 4aec_A Cysteine synthase, mito 20.4 3E+02 0.01 26.8 8.4 63 185-261 189-252 (430)
131 3etn_A Putative phosphosugar i 20.1 1.7E+02 0.0058 25.3 6.0 77 145-237 65-144 (220)
No 1
>2bfd_A 2-oxoisovalerate dehydrogenase alpha subunit; oxidoreductase, multi-enzyme complex, acylation, oxidative decarboxylation, maple syrup urine disease; HET: TDP; 1.39A {Homo sapiens} SCOP: c.36.1.11 PDB: 1v16_A* 2bfc_A* 1v1r_A* 1olu_A* 2bfb_A* 1v1m_A* 2bew_A* 1dtw_A* 1olx_A* 1ols_A* 1wci_A* 1x80_A* 2beu_A* 1u5b_A* 2bev_A* 1v11_A* 1x7x_A* 1x7y_A* 1x7w_A* 1x7z_A* ...
Probab=100.00 E-value=6.7e-84 Score=646.19 Aligned_cols=379 Identities=47% Similarity=0.861 Sum_probs=345.6
Q ss_pred CccccCCCCCCCCeeEeeCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccchhHHHHHHH
Q 016909 1 MRFISESSEERIPCYRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRISFYLTTSGEEAINIAS 80 (380)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~y~~M~~~R~~e~~~~~~~~~g~i~~~~~~~GqEa~~~~~ 80 (380)
|+|++++....+|++||||.||++++++..+.+++++++++|+.|+++|.||+++..++++|+++|++++.||||+++|+
T Consensus 20 ~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~e~~~~~y~~M~~~r~fe~~~~~~~~~gri~~~~~~~GqEa~~vg~ 99 (400)
T 2bfd_A 20 LEFIQPNVISGIPIYRVMDRQGQIINPSEDPHLPKEKVLKLYKSMTLLNTMDRILYESQRQGRISFYMTNYGEEGTHVGS 99 (400)
T ss_dssp CCCCCCCCSSCSCEECSBCTTSCBSCGGGCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSCCCCCTTCHHHHHHH
T ss_pred eeeccCcccCCCCeeEEECCCCCCCCccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcceeecCCChHHHHHHH
Confidence 68999988889999999999999988766678999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCCcEEEccccchHHHHHcCCCHHHHHHHhhcCCCCCCCCCCCccccCCCCCCcccccccccCccHHHHHHHHHhh
Q 016909 81 AAAIKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALK 160 (380)
Q Consensus 81 ~~~l~~~D~v~~~yR~~~~~l~~G~~~~~~l~e~~g~~~~~~~G~~~~~H~~~~~~~~~~~~g~lG~~~p~AvG~A~A~k 160 (380)
+.+|+++|+|+++||+|++++++|++++++|++++|+.+++++|+++++|+..+..++..++|+||+++|+|+|+|+|.|
T Consensus 100 ~~al~~~D~v~~~yR~~~~~~~~G~~~~~~l~e~~g~~~g~~~G~~~~~H~~~~~~~~~~~~g~lG~~lp~AvG~AlA~~ 179 (400)
T 2bfd_A 100 AAALDNTDLVFGQAREAGVLMYRDYPLELFMAQCYGNISDLGKGRQMPVHYGCKERHFVTISSPLATQIPQAVGAAYAAK 179 (400)
T ss_dssp HHTSCTTSEEECCSCCHHHHHHTTCCHHHHHHHHHTCTTCTTTTCSCSSCCCBTTTTBCCCCSSTTTHHHHHHHHHHHHH
T ss_pred HHhcCCCCEEEecCcCHHHHHHcCCCHHHHHHHhcCCCCCCCCCCCCCcCCcccccCccccCccccccccHHHHHHHhhh
Confidence 99999999999999999999999999999999999999999999999999998778888899999999999999999999
Q ss_pred hcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcceeeecccccCCcCHHHHHhhcCeeEEEEeCCCHH
Q 016909 161 MDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDAL 240 (380)
Q Consensus 161 ~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~G~~~~~VdG~D~~ 240 (380)
+++++++|||++|||++++|.+||+||+|++|+||+||||+||+|+++++...+.+..++++++++|||++++|||+|++
T Consensus 180 ~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vv~NN~~~i~~~~~~~~~~~d~~~~a~a~G~~~~~VdG~D~~ 259 (400)
T 2bfd_A 180 RANANRVVICYFGEGAASEGDAHAGFNFAATLECPIIFFCRNNGYAISTPTSEQYRGDGIAARGPGYGIMSIRVDGNDVF 259 (400)
T ss_dssp HHTCCCCEEEEEETTGGGSHHHHHHHHHHHHTTCCEEEEEEECSEETTEEGGGTCSSSTTGGGTGGGTCEEEEEETTCHH
T ss_pred hhCCCCeEEEEECchhhhcChHHHHHHHHHHHCcCEEEEEECCceeeeecccccCCCCCHHHHHHHcCCcEEEEeCCCHH
Confidence 99999999999999999999999999999999999999999999999999888888889999999999999999999999
Q ss_pred HHHHHHHHHHHHhhccCCcEEEEEEeecCCCCCCCCCCCCCCChhHHHHHHhCCChHHHHHHHHHHCCCCCHHHHHHHHH
Q 016909 241 AIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDDSTKYRPVDEIEWWRTTQDPVTRFRKWIESNGWWNGDIESELRS 320 (380)
Q Consensus 241 av~~a~~~A~~~ar~~~gP~lIe~~t~R~~gHs~~Dd~~~Yr~~~e~~~~~~~~DPi~~~~~~L~~~g~~t~~~~~~i~~ 320 (380)
+|++++++|++++|++++|+||+++|||++|||++|+|..||+++|++.|++..|||.+++++|++.|+||++++++|++
T Consensus 260 av~~a~~~A~~~ar~~~~P~lIe~~tyR~~gHs~~D~~~~Yr~~~e~~~~~~~~dPl~~~~~~L~~~g~~~~~~~~~i~~ 339 (400)
T 2bfd_A 260 AVYNATKEARRRAVAENQPFLIEAMTYRIGHASTSDDSSAFRSVDEVNYWDKQDHPISRLRHYLLSQGWWDEEQEKAWRK 339 (400)
T ss_dssp HHHHHHHHHHHHHHHHTCCEEEEEECCCCC--CC-------------------CCHHHHHHHHHTTTTCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEEEeeeeCCCCCCCCCccCCCHHHHHHHHhcCCHHHHHHHHHHHCCCCChHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999854589999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCccccccccCCCccHHHHHHHHHHHHHhCCCCCCCCCC
Q 016909 321 SVRKQILHALQEAEKAEKPPISDLFTDVYDVSPSNLREQEHSLRETIKKHPQDYPSNVP 379 (380)
Q Consensus 321 ~~~~~v~~a~~~a~~~~~p~~~~~~~~vy~~~~~~~~~~~~~l~~~~~~~p~~~~~~~~ 379 (380)
+++++|++++++|++.|.|+++++|++||++.++.+.+|++.|.+.+.++|++|++++|
T Consensus 340 ~~~~~v~~a~~~a~~~~~p~~~~~~~~vy~~~~~~l~~q~~~~~~~~~~~~~~~~~~~~ 398 (400)
T 2bfd_A 340 QSRRKVMEAFEQAERKPKPNPNLLFSDVYQEMPAQLRKQQESLARHLQTYGEHYPLDHF 398 (400)
T ss_dssp HHHHHHHHHHHHHHHSCBCCGGGGSTTSSSSCCHHHHHHHHHHHHHHHHHGGGSCGGGB
T ss_pred HHHHHHHHHHHHHHhCCCCCHHHHHHHhhccCCHHHHHHHHHHHHHHHhCCCcCCcccc
Confidence 99999999999999999999999999999999999999999999999999999998765
No 2
>1qs0_A 2-oxoisovalerate dehydrogenase alpha-subunit; heterotetramer, THDP cofactor, oxidoreductase; HET: TDP; 2.40A {Pseudomonas putida} SCOP: c.36.1.11 PDB: 2bp7_A
Probab=100.00 E-value=8.8e-81 Score=623.85 Aligned_cols=349 Identities=36% Similarity=0.553 Sum_probs=335.4
Q ss_pred CCeeEeeCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccchhHHHHHHHHhcCCCCcEEE
Q 016909 12 IPCYRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRISFYLTTSGEEAINIASAAAIKNDDFVV 91 (380)
Q Consensus 12 ~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~y~~M~~~R~~e~~~~~~~~~g~i~~~~~~~GqEa~~~~~~~~l~~~D~v~ 91 (380)
.|++||||.+|+++++. .+.+++++++++|+.|+++|.||+++..+++||+++|+|++.||||+++|++.+|+++|+++
T Consensus 51 ~~~~~~ld~~g~~~~~~-~~~~~~e~~~~~y~~M~~~R~fe~~~~~~~~qgr~~~~~~~~GqEA~~vg~~~al~~~D~v~ 129 (407)
T 1qs0_A 51 YSLVRVLDEQGDAQGPW-AEDIDPQILRQGMRAMLKTRIFDSRMVVAQRQKKMSFYMQSLGEEAIGSGQALALNRTDMCF 129 (407)
T ss_dssp TSCBCCBCTTSCBCSGG-GSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSCCCCCTTTHHHHHHHHHHSCTTSEEE
T ss_pred CCeEEEECCCCCCCCcC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccCcCCCChHHHHHHHHHhcCCCCEEE
Confidence 47899999999988764 57899999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccchHHHHHcCCCHHHHHHHhhcCCCCCCCCCCCccccCCCCCCcccccccccCccHHHHHHHHHhhhcCCCceeEEE
Q 016909 92 PQYREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTY 171 (380)
Q Consensus 92 ~~yR~~~~~l~~G~~~~~~l~e~~g~~~~~~~G~~~~~H~~~~~~~~~~~~g~lG~~~p~AvG~A~A~k~~~~~~~vv~~ 171 (380)
++||+|++++++|+++.++|++++|+.+++++|+++++|+.....++++++|+||+++|+|+|+|+|.|+++++++|||+
T Consensus 130 ~~yR~~~~~l~~g~~~~~i~~el~g~~~~~~~G~g~~~h~~~~~~~~~~~~g~lG~~lp~AvGaA~A~k~~~~~~~vv~i 209 (407)
T 1qs0_A 130 PTYRQQSILMARDVSLVEMICQLLSNERDPLKGRQLPIMYSVREAGFFTISGNLATQFVQAVGWAMASAIKGDTKIASAW 209 (407)
T ss_dssp CCSSCHHHHHHTTCCHHHHHHHHHTCTTCTTTTCSCTTCCCBGGGTBCCCCSSSSHHHHHHHHHHHHHHHTTCCCCEEEE
T ss_pred ecccchHHHHhcCCCHHHHHHHHhCCCCCCCCCCCceeecchhccCccccccccccchhHHHHHHHHHHHhCCCCEEEEE
Confidence 99999999999999999999999999999999999999998877899999999999999999999999999999999999
Q ss_pred eCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcceeeeccccc-CCcCHHHHHhhcCeeEEEEeCCCHHHHHHHHHHHH
Q 016909 172 FGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQF-RSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAR 250 (380)
Q Consensus 172 ~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~i~~~~~~~~-~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~A~ 250 (380)
+|||++++|.+||+||+|++|+||+||||+||+|+++++....+ ...+++++|++|||++++|||+|+++|++++++|+
T Consensus 210 ~GDGa~~~G~~~Eal~~A~~~~lpvi~Vv~NN~~gi~~~~~~~~~~~~d~a~~a~a~G~~~~~VdG~D~~av~~a~~~A~ 289 (407)
T 1qs0_A 210 IGDGATAESDFHTALTFAHVYRAPVILNVVNNQWAISTFQAIAGGESTTFAGRGVGCGIASLRVDGNDFVAVYAASRWAA 289 (407)
T ss_dssp EETGGGGSHHHHHHHHHHHHHTCCEEEEEEECSEETTEEGGGGTTTTCCSTHHHHHTTCEEEEEETTCHHHHHHHHHHHH
T ss_pred ECCchhhcChHHHHHHHHHHHCcCEEEEEECCCcceeeccccccCCCCCHHHHHHHcCCeEEEEcCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999887665 56789999999999999999999999999999999
Q ss_pred HHhhccCCcEEEEEEeecCCCCCCCCCCCCCCChhHHHHHHhCCChHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
Q 016909 251 EMAIGEGRPILIEALTYRVGHHTTSDDSTKYRPVDEIEWWRTTQDPVTRFRKWIESNGWWNGDIESELRSSVRKQILHAL 330 (380)
Q Consensus 251 ~~ar~~~gP~lIe~~t~R~~gHs~~Dd~~~Yr~~~e~~~~~~~~DPi~~~~~~L~~~g~~t~~~~~~i~~~~~~~v~~a~ 330 (380)
+++|++++|+|||++|||.+|||++|||..||+++|++.|+ ++|||.+|+++|+++|+||++++++|+++++++|++++
T Consensus 290 ~~ar~~~gP~lIe~~t~R~~Ghs~~Dd~~~Yr~~~e~~~~~-~~DPi~~~~~~L~~~g~~~~~~~~~i~~~~~~~v~~a~ 368 (407)
T 1qs0_A 290 ERARRGLGPSLIEWVTYRAGPHSTSDDPSKYRPADDWSHFP-LGDPIARLKQHLIKIGHWSEEEHQATTAEFEAAVIAAQ 368 (407)
T ss_dssp HHHHTTSCCEEEEEECCCCSCSSTTCCGGGTSCTTHHHHCT-TCCHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCCEEEEEEeeccCCcCCCCCccccCCHHHHHHHh-cCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999998 59999999999999999999999999999999999999
Q ss_pred HHHHh------CCCCCCCccccccccCCCccHHHHHHH
Q 016909 331 QEAEK------AEKPPISDLFTDVYDVSPSNLREQEHS 362 (380)
Q Consensus 331 ~~a~~------~~~p~~~~~~~~vy~~~~~~~~~~~~~ 362 (380)
++|++ +|.|+++++|+|||+++|+++++|++.
T Consensus 369 ~~a~~~~~~~~~p~p~~~~~~~~vy~~~~~~l~~q~~~ 406 (407)
T 1qs0_A 369 KEAEQYGTLANGHIPSAASMFEDVYKEMPDHLRRQRQE 406 (407)
T ss_dssp HHHHTTCCSSSCCCCCSSGGGSSSSSSCCHHHHHHHHT
T ss_pred HHHHhcccccCCCCCCHHHHHhhccCCCCHHHHHHHHh
Confidence 99998 589999999999999999999999875
No 3
>1w85_A Pyruvate dehydrogenase E1 component, alpha subunit; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: c.36.1.11 PDB: 3duf_A* 3dv0_A* 3dva_A* 1w88_A*
Probab=100.00 E-value=2.1e-79 Score=607.53 Aligned_cols=349 Identities=36% Similarity=0.617 Sum_probs=325.0
Q ss_pred CCCCeeEeeCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccchhHHHHHHHHhcCCCCcE
Q 016909 10 ERIPCYRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRISFYLTTSGEEAINIASAAAIKNDDF 89 (380)
Q Consensus 10 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~y~~M~~~R~~e~~~~~~~~~g~i~~~~~~~GqEa~~~~~~~~l~~~D~ 89 (380)
...|++||||.+|+++++...+.+++++++++|+.|+++|.||+++.+++++|+++|+|++.||||+++|++.+|+++|+
T Consensus 18 ~~~~~~~~l~~~g~~~~~~~~~~l~~e~l~~~y~~M~~~R~fe~~~~~~~~qgr~g~~~~~~G~Ea~~vg~~~~l~~~D~ 97 (368)
T 1w85_A 18 EQFPTFQILNEEGEVVNEEAMPELSDEQLKELMRRMVYTRILDQRSISLNRQGRLGFYAPTAGQEASQIASHFALEKEDF 97 (368)
T ss_dssp HTCCEECSBCTTSCBSCGGGCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCSCCCCTTCHHHHHHHHHTCCTTCE
T ss_pred CCCCeeEEECCCCCCCCccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccCCCCCCHHHHHHHHHHhcCCcCE
Confidence 35689999999999988755578999999999999999999999999999999999999999999999999999999999
Q ss_pred EEccccchHHHHHcCCCHHHHHHHhhcCCCCCCCCCCCccccCCCCCCcccccccccCccHHHHHHHHHhhhcCCCceeE
Q 016909 90 VVPQYREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAV 169 (380)
Q Consensus 90 v~~~yR~~~~~l~~G~~~~~~l~e~~g~~~~~~~G~~~~~H~~~~~~~~~~~~g~lG~~~p~AvG~A~A~k~~~~~~~vv 169 (380)
++++||+|++++++|.++..+|++++|+.+ |+ ++| ...++.+++|++|+++|+|+|+|+|.|+++++++||
T Consensus 98 v~~~~R~~~~~~~~G~~~~~~~~el~G~~~----G~--~~h---~~~~~~~~~g~lG~~lp~AvG~A~A~~~~~~~~~vv 168 (368)
T 1w85_A 98 ILPGYRDVPQIIWHGLPLYQAFLFSRGHFH----GN--QIP---EGVNVLPPQIIIGAQYIQAAGVALGLKMRGKKAVAI 168 (368)
T ss_dssp EECCSSCHHHHHHTTCCHHHHHHHHHTCGG----GG--CCC---TTCCBCCCCCSTTHHHHHHHHHHHHHHHTTCSCCEE
T ss_pred EEecchhHHHHHhcCCCHHHHHHHHCCCCC----CC--CCC---cccccCCCccccCccccHHHHHHHHhHhhCCCCeEE
Confidence 999999999999999999999999999864 33 345 346788899999999999999999999999999999
Q ss_pred EEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcceeeecccccCCcCHHHHHhhcCeeEEEEeCCCHHHHHHHHHHH
Q 016909 170 TYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAA 249 (380)
Q Consensus 170 ~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~A 249 (380)
|++|||++++|.++|+||+|++|+||+||||+||+|+++++.....+.++++++|++|||++++|||||+++|++++++|
T Consensus 169 ~i~GDGa~~~G~~~Eal~~A~~~~lpvi~vv~NN~~gi~~~~~~~~~~~d~~~~a~a~G~~~~~VdG~D~~av~~a~~~A 248 (368)
T 1w85_A 169 TYTGDGGTSQGDFYEGINFAGAFKAPAIFVVQNNRFAISTPVEKQTVAKTLAQKAVAAGIPGIQVDGMDPLAVYAAVKAA 248 (368)
T ss_dssp EEEETGGGGSHHHHHHHHHHHHTTCCEEEEEEECSEETTEEGGGTCSCSCSGGGGGGTTCCEEEEETTCHHHHHHHHHHH
T ss_pred EEEchhhhhhcHHHHHHHHHHHHCcCEEEEEEcCCccceeccccccCCCCHHHHHHHCCCCEEEEcCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999888777789999999999999999999999999999999
Q ss_pred HHHhhccCCcEEEEEEeecCCCCC-CCCCCCCCCChhHHHHHHhCCChHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Q 016909 250 REMAIGEGRPILIEALTYRVGHHT-TSDDSTKYRPVDEIEWWRTTQDPVTRFRKWIESNGWWNGDIESELRSSVRKQILH 328 (380)
Q Consensus 250 ~~~ar~~~gP~lIe~~t~R~~gHs-~~Dd~~~Yr~~~e~~~~~~~~DPi~~~~~~L~~~g~~t~~~~~~i~~~~~~~v~~ 328 (380)
++++|++++|+|||++|||.+||| ++|||..||+++|++.|+ ++|||.+|+++|+++|+||++++++|+++++++|++
T Consensus 249 ~~~~r~~~gP~lIe~~t~r~~gHs~~~Ddp~~yr~~~e~~~~~-~~dPi~~~~~~L~~~g~~~~~~~~~i~~~~~~~v~~ 327 (368)
T 1w85_A 249 RERAINGEGPTLIETLCFRYGPHTMSGDDPTRYRSKELENEWA-KKDPLVRFRKFLEAKGLWSEEEENNVIEQAKEEIKE 327 (368)
T ss_dssp HHHHHTTSCCEEEEEECCCSSCSCSSCC------CHHHHHHHH-TTCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCEEEEEEeeccCCCCCCCCCccccCCHHHHHHHh-cCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999 999999999999999998 599999999999999999999999999999999999
Q ss_pred HHHHHHhCCCCCCCccccccccCCCccHHHHHHHHHHHHH
Q 016909 329 ALQEAEKAEKPPISDLFTDVYDVSPSNLREQEHSLRETIK 368 (380)
Q Consensus 329 a~~~a~~~~~p~~~~~~~~vy~~~~~~~~~~~~~l~~~~~ 368 (380)
++++|+++|.|+++++|+|||+++++++++|++.+++.+.
T Consensus 328 a~~~a~~~p~p~~~~~~~~vy~~~~~~l~~q~~~~~~~~~ 367 (368)
T 1w85_A 328 AIKKADETPKQKVTDLISIMFEELPFNLKEQYEIYKEKES 367 (368)
T ss_dssp HHHHHHTSCCCCHHHHHHTSCSSCCHHHHHHHHHHHHHTC
T ss_pred HHHHHHhCCCCCHHHHHhhccCCCChHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999876543
No 4
>1umd_A E1-alpha, 2-OXO acid dehydrogenase alpha subunit; alpha(2)beta(2) tetramer, structural genomics; HET: TDP; 1.90A {Thermus thermophilus} SCOP: c.36.1.11 PDB: 1um9_A* 1umc_A* 1umb_A*
Probab=100.00 E-value=2.1e-76 Score=586.82 Aligned_cols=355 Identities=39% Similarity=0.624 Sum_probs=340.8
Q ss_pred CCCCeeEeeCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccchhHHHHHHHHhcCCCC-c
Q 016909 10 ERIPCYRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRISFYLTTSGEEAINIASAAAIKND-D 88 (380)
Q Consensus 10 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~y~~M~~~R~~e~~~~~~~~~g~i~~~~~~~GqEa~~~~~~~~l~~~-D 88 (380)
...|++||||.+|+++++ ..+.+++++++++|+.|+++|.||.++..++++|++++++++.|+|++++++..+++++ |
T Consensus 11 ~~~~~~~~l~~~g~~~~~-~~~~l~~~~l~~l~~~m~~~R~~~~~~~~~~~~G~~g~~~~~~G~ea~~~~~~~~l~~~rD 89 (367)
T 1umd_A 11 FTEEPIRLIGEEGEWLGD-FPLDLEGEKLRRLYRDMLAARMLDERYTILIRTGKTSFIAPAAGHEAAQVAIAHAIRPGFD 89 (367)
T ss_dssp SCSSCBCCBCTTSCBCCS-SCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCSCCCCCTTCHHHHHHHHHHSCTTTS
T ss_pred CCCCeEEEECCCCCCCCc-cCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhCCCccCCCCCcCHHHHHHHHHHHcCCCCc
Confidence 456899999999998887 46789999999999999999999999999999999999999999999999999999998 9
Q ss_pred EEEccccchHHHHHcCCCHHHHHHHhhcCCCCCCCCCCCccccCCCCCCcccccccccCccHHHHHHHHHhhhcCCCcee
Q 016909 89 FVVPQYREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACA 168 (380)
Q Consensus 89 ~v~~~yR~~~~~l~~G~~~~~~l~e~~g~~~~~~~G~~~~~H~~~~~~~~~~~~g~lG~~~p~AvG~A~A~k~~~~~~~v 168 (380)
+++++||+|++++.+|+++.++|++++|+.+|++.|+++++|+.++..++.+++|++|+++|+|+|+|+|.|+.+++++|
T Consensus 90 ~i~~s~r~~~~~~~~G~~~~~~l~~~~g~~~g~~~G~~~~~h~~~~~~~~~~~~g~lG~~l~~a~G~A~a~k~~~~~~~v 169 (367)
T 1umd_A 90 WVFPYYRDHGLALALGIPLKELLGQMLATKADPNKGRQMPEHPGSKALNFFTVASPIASHVPPAAGAAISMKLLRTGQVA 169 (367)
T ss_dssp EEECCTTTHHHHHHHTCCHHHHHHHHHTBTTCTTTTCSCSSCCCBTTTTBCCCCSSTTTTHHHHHHHHHHHHHTTCCCCE
T ss_pred EEEeCcHHHHHHHHcCCCHHHHHHHHhCCCCCCCCCCCCCCCCcccccCcCCCCchhhhhhhHHHHHHHHHHHhCCCCeE
Confidence 99999999999999999999999999999999999999999998777888889999999999999999999999999999
Q ss_pred EEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcceeeecccccCCcCHHHHHhhcCeeEEEEeCCCHHHHHHHHHH
Q 016909 169 VTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHA 248 (380)
Q Consensus 169 v~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~ 248 (380)
||++|||++++|.++|+||+|+.|+||+||||+||+|+++++.....+..++++++++|||++++|||+|+.+|++++++
T Consensus 170 v~i~GDGa~~~G~~~Eal~~A~~~~lpvi~vv~NN~~gi~~~~~~~~~~~d~~~~a~a~G~~~~~Vdg~d~~av~~a~~~ 249 (367)
T 1umd_A 170 VCTFGDGATSEGDWYAGINFAAVQGAPAVFIAENNFYAISVDYRHQTHSPTIADKAHAFGIPGYLVDGMDVLASYYVVKE 249 (367)
T ss_dssp EEEEETGGGGSHHHHHHHHHHHHTTCSEEEEEEECSEETTEEHHHHCSSSCSGGGGGGTTSCEEEEETTCHHHHHHHHHH
T ss_pred EEEEcccccccCcHHHHHHHHHHhCcCEEEEEecCCeeeccChhhccCCCCHHHHHHHcCCcEEEeCCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999887777778999999999999999999999999999999
Q ss_pred HHHHhhccCCcEEEEEEeecCCCCCCCCCCCCCCChhHHHHHHhCCChHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Q 016909 249 AREMAIGEGRPILIEALTYRVGHHTTSDDSTKYRPVDEIEWWRTTQDPVTRFRKWIESNGWWNGDIESELRSSVRKQILH 328 (380)
Q Consensus 249 A~~~ar~~~gP~lIe~~t~R~~gHs~~Dd~~~Yr~~~e~~~~~~~~DPi~~~~~~L~~~g~~t~~~~~~i~~~~~~~v~~ 328 (380)
|+++++++++|+||+++|||.+|||++|+|..||+++|++.|+ ++|||.+|+++|+++|+||++++++|+++++++|++
T Consensus 250 A~~~a~~~~gP~lIe~~t~r~~Ghs~~D~~~~Yr~~~e~~~~~-~~dPi~~~~~~L~~~g~~~~~~~~~i~~~~~~~v~~ 328 (367)
T 1umd_A 250 AVERARRGEGPSLVELRVYRYGPHSSADDDSRYRPKEEVAFWR-KKDPIPRFRRFLEARGLWNEEWEEDVREEIRAELER 328 (367)
T ss_dssp HHHHHHTTCCCEEEEEECCCCSCSSTTCCGGGTSCHHHHHHHH-TTCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCEEEEEEeecCCCCCCCCCccccCCHHHHHHHH-cCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999998 599999999999999999999999999999999999
Q ss_pred HHHHHHhCCCCCCCccccccccCCCccHHHHHHHHHHH
Q 016909 329 ALQEAEKAEKPPISDLFTDVYDVSPSNLREQEHSLRET 366 (380)
Q Consensus 329 a~~~a~~~~~p~~~~~~~~vy~~~~~~~~~~~~~l~~~ 366 (380)
++++|+++|.|+++++|+|||+++++++++|++.+++.
T Consensus 329 a~~~a~~~~~p~~~~~~~~vy~~~~~~l~~q~~~~~~~ 366 (367)
T 1umd_A 329 GLKEAEEAGPVPPEWMFEDVFAEKPWHLLRQEALLKEE 366 (367)
T ss_dssp HHHHHHHTCBCCGGGGGTTSSSSCCHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCCHHHHHhhhcCCCChhHHHHHHHHHhh
Confidence 99999999999999999999999999999999988654
No 5
>2ozl_A PDHE1-A type I, pyruvate dehydrogenase E1 component alpha subunit, somatic form; pyruvate_dehydrogenase_complex, human, multienzyme_complex_component; HET: TPP; 1.90A {Homo sapiens} SCOP: c.36.1.11 PDB: 1ni4_A* 3exe_A* 3exi_A 3exh_A* 3exg_A 3exf_A*
Probab=100.00 E-value=4.9e-76 Score=582.22 Aligned_cols=322 Identities=28% Similarity=0.432 Sum_probs=306.7
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-ccccccchhHHHHHHHHhcCCCCcEEEccccchHHHHHcCCCH
Q 016909 29 SFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRI-SFYLTTSGEEAINIASAAAIKNDDFVVPQYREPGVLLWRGFSM 107 (380)
Q Consensus 29 ~~~~~~~~~l~~~y~~M~~~R~~e~~~~~~~~~g~i-~~~~~~~GqEa~~~~~~~~l~~~D~v~~~yR~~~~~l~~G~~~ 107 (380)
+.+.+++++++++|+.|+++|.||+++..+++||++ +|+|++.||||+++|++.+|+++|+++++||+|++++++|+++
T Consensus 27 ~~~~l~~e~l~~~yr~M~~~R~~e~~~~~l~~~g~i~gf~~~~~GqEa~~vg~~~al~~~D~i~~~yR~~~~~~~~G~~~ 106 (365)
T 2ozl_A 27 VTTVLTREDGLKYYRMMQTVRRMELKADQLYKQKIIRGFCHLCDGQEACCVGLEAGINPTDHLITAYRAHGFTFTRGLSV 106 (365)
T ss_dssp SEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCSCCCCCTTCHHHHHHHHHTSCTTSEEECCSCCHHHHHHTTCCH
T ss_pred ccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccCCCChHHHHHHHHHhhCCCCEEehHHHHHHHHHhcCCCH
Confidence 356799999999999999999999999999999999 7999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCCCCCCCCCCCccccCCCCCCcccccccccCccHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHH
Q 016909 108 QEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALN 187 (380)
Q Consensus 108 ~~~l~e~~g~~~~~~~G~~~~~H~~~~~~~~~~~~g~lG~~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~ 187 (380)
.++|++++|+.+|+++|+++++|+.+ .++.+.+|+||+++|+|+|+|+|.|+++++++|||++|||++++|.+||+||
T Consensus 107 ~~i~~e~~g~~~g~~~g~gg~~H~~~--~~~~~~~g~~G~~lp~A~G~A~A~~~~~~~~~vv~~~GDGa~~~G~~~Ealn 184 (365)
T 2ozl_A 107 REILAELTGRKGGCAKGKGGSMHMYA--KNFYGGNGIVGAQVPLGAGIALACKYNGKDEVCLTLYGDGAANQGQIFEAYN 184 (365)
T ss_dssp HHHHHHHTTCTTSTTTTSSCTTCCCB--TTBCCCCCSTTTHHHHHHHHHHHHHHHTCCCCEEEEEETTGGGCHHHHHHHH
T ss_pred HHHHHHHcCCCCCCCCCCCCCCCcCc--cccCCCcchhhhhhHHHHHHHHHHHhcCCCceEEEEECchhhhccHHHHHHH
Confidence 99999999999999999888899854 4788888999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCEEEEEEcCCcceeeecccccCCcCHHHHHhhcCeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEee
Q 016909 188 FSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTY 267 (380)
Q Consensus 188 ~A~~~~Lpvi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~ 267 (380)
+|++|+||+||||+||+|+++++........++++ ++||+++++|||||+++|++++++|++++|+++||+|||++||
T Consensus 185 ~A~~~~lpvi~vv~NN~~g~~t~~~~~~~~~~~~~--ra~g~p~~~VdG~D~~av~~a~~~A~~~~r~~~gP~lIe~~t~ 262 (365)
T 2ozl_A 185 MAALWKLPCIFICENNRYGMGTSVERAAASTDYYK--RGDFIPGLRVDGMDILCVREATRFAAAYCRSGKGPILMELQTY 262 (365)
T ss_dssp HHHHTTCCEEEEEEECSEETTEEHHHHCSCCCGGG--TTTTSCEEEEETTCHHHHHHHHHHHHHHHHTTCCCEEEEEECC
T ss_pred HHHHHCcCEEEEEECCCcccCCCcccccCCCCHHH--HhCCCCEEEEeCCCHHHHHHHHHHHHHHHHhCCCCEEEEEEee
Confidence 99999999999999999999998777666677877 6899999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCCCCCChhHHHHHHhCCChHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCccccc
Q 016909 268 RVGHHTTSDDSTKYRPVDEIEWWRTTQDPVTRFRKWIESNGWWNGDIESELRSSVRKQILHALQEAEKAEKPPISDLFTD 347 (380)
Q Consensus 268 R~~gHs~~Dd~~~Yr~~~e~~~~~~~~DPi~~~~~~L~~~g~~t~~~~~~i~~~~~~~v~~a~~~a~~~~~p~~~~~~~~ 347 (380)
|.+|||++|++..||+++|++.|++.+|||.+|+++|+++|++|++++++|+++++++|++++++|+++|.|+++++|+|
T Consensus 263 R~~gHs~~D~~~~Yr~~~e~~~~~~~~dpi~~~~~~L~~~g~~~~~~~~~i~~~~~~~v~~a~~~a~~~p~p~~~~~~~~ 342 (365)
T 2ozl_A 263 RYHGHEMSDPGVSYRTREEIQEVRSKSDPIMLLKDRMVNSNLASVEELKEIDVEVRKEIEDAAQFATADPEPPLEELGYH 342 (365)
T ss_dssp CSSCSSTTCCSCSSSCHHHHHHHHHHHCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHSCCCCGGGTTCS
T ss_pred cCCCCCCCCCCcccCCHHHHHHHHhCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHhh
Confidence 99999999988889999999999745799999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCc
Q 016909 348 VYDVSPS 354 (380)
Q Consensus 348 vy~~~~~ 354 (380)
||+++++
T Consensus 343 vy~~~~~ 349 (365)
T 2ozl_A 343 IYSSDPP 349 (365)
T ss_dssp SSSSCCC
T ss_pred hcCCCCh
Confidence 9998765
No 6
>2yic_A 2-oxoglutarate decarboxylase; lyase; HET: TPP; 1.96A {Mycobacterium smegmatis} PDB: 2xta_A* 2y0p_A* 2xt9_A* 2yid_A*
Probab=100.00 E-value=2.7e-60 Score=512.06 Aligned_cols=344 Identities=15% Similarity=0.138 Sum_probs=285.0
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccchhHHHHHHHHhc------CCCCcEEEc-cccchHHHHH-
Q 016909 31 VKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRISFYLTTSGEEAINIASAAA------IKNDDFVVP-QYREPGVLLW- 102 (380)
Q Consensus 31 ~~~~~~~l~~~y~~M~~~R~~e~~~~~~~~~g~i~~~~~~~GqEa~~~~~~~~------l~~~D~v~~-~yR~~~~~l~- 102 (380)
+.+|+++++++|+.|+++|.||+++..++++|+. | +..||||++++++.+ ++++|++++ +||+|+++|+
T Consensus 113 ~~~s~e~~~~~y~~m~~~R~fE~~l~~~~~~~k~-~--g~~G~Ea~~~g~~~~l~~~~~l~~~D~v~gm~hRg~~~~Lan 189 (868)
T 2yic_A 113 DKPTVAEQKYILSKLNAAEAFETFLQTKYVGQKR-F--SLEGAETVIPMMDAVIDQCAEHGLDEVVIAMPHRGRLNVLAN 189 (868)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHHHHCSSCGG-G--CCTTCTTHHHHHHHHHHHHHHTTCSEEEEECCSTTHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-c--cCCChHHHHHHHHHHHHHhhhCCCCCEEEeccccchHHHHHH
Confidence 5799999999999999999999999999998874 2 348999999999876 458999998 7999999999
Q ss_pred -cCCCHHHHHHHhhcCCCCC-C-CCCCCccccCCCC------------CCcccccccccCccHHHHHHHHHhhhcC----
Q 016909 103 -RGFSMQEFANQCFGNKADY-G-KGRQMPIHYGSNK------------HNYFTVSSTIATQLPHAVGAAYALKMDR---- 163 (380)
Q Consensus 103 -~G~~~~~~l~e~~g~~~~~-~-~G~~~~~H~~~~~------------~~~~~~~g~lG~~~p~AvG~A~A~k~~~---- 163 (380)
+|++++++|+|++|+.+++ + .|+++++|++... .++.+++|+||+++|+|+|+|+|.|+++
T Consensus 190 ~~G~~~~~i~ae~~G~~~g~~~~g~gdv~~Hlg~~~~~~~~~g~~~v~l~l~~n~s~Lg~~~P~A~G~A~A~k~~~~~~~ 269 (868)
T 2yic_A 190 IVGKPYSQIFSEFEGNLNPSQAHGSGDVKYHLGATGTYIQMFGDNDIEVSLTANPSHLEAVDPVLEGLVRAKQDLLDTGE 269 (868)
T ss_dssp TTCCCHHHHTTTCC------------CGGGTCCEEEEEECSSSSCEEEEEECCCCSSTTTTHHHHHHHHHHHHHHHTCST
T ss_pred HhCCCHHHHHHHhcCCCCCCccCCCCCccccCCccccccccCCCcceeeeecCCCccccccccHHHHHHHHHHhhccCCc
Confidence 9999999999999999877 4 4566789987432 2456678999999999999999999864
Q ss_pred ------CCceeEEEeCcccc-CcchHHHHHHHHHHcCCC---EEEEEEcCCcceeeecccccCCcCHHHHHhhcCeeEEE
Q 016909 164 ------KDACAVTYFGDGGT-SEGDFHAALNFSAVTEAP---VIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIR 233 (380)
Q Consensus 164 ------~~~~vv~~~GDG~~-~eG~~~Eal~~A~~~~Lp---vi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~G~~~~~ 233 (380)
.+.++||++|||++ +||.+||+||+|+.|+|| +||||+||+|+++++...+.+..++.+++++|||++++
T Consensus 270 ~~~~~~~~~~vv~~~GDGa~~~eG~v~Ealn~A~~~~lp~g~vi~iv~NN~~g~st~~~~~~s~~~~~~~a~a~G~p~~~ 349 (868)
T 2yic_A 270 EGSDNRFSVVPLMLHGDAAFAGQGVVAETLNLALLRGYRTGGTIHIVVNNQIGFTTAPTDSRSSEYCTDVAKMIGAPIFH 349 (868)
T ss_dssp TSSSCSCCEEEEEEEEHHHHHHCHHHHHHHTTTTCTTTCCSCCEEEEEECSCBTTBCHHHHCSSSSTTGGGGGGTCCEEE
T ss_pred ccccccCCceEEEEECCcccccccHHHHHHHHHHhcCCCCCCeEEEEEcCCcccccCccccccccCHHHHHHhCCCcEEE
Confidence 56799999999996 899999999999999998 99999999999999876555666788999999999999
Q ss_pred EeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCCCCCCCCCCCCCCChhHHHHHHhCCChHHHHHHHHHHCCCCCHH
Q 016909 234 VDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDDSTKYRPVDEIEWWRTTQDPVTRFRKWIESNGWWNGD 313 (380)
Q Consensus 234 VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R~~gHs~~Dd~~~Yr~~~e~~~~~~~~DPi~~~~~~L~~~g~~t~~ 313 (380)
|||||+++|+.++++|++++|++++|+||+++|||++|||++|+|. ||.+++++.|++++||+.+|+++|+++|++|++
T Consensus 350 VdG~D~~av~~a~~~A~~~ar~~~~PvlIe~~tyR~~GHs~~D~p~-~~~p~~~~~~~~~~dPi~~~~~~L~~~G~~t~e 428 (868)
T 2yic_A 350 VNGDDPEACAWVARLAVDFRQAFKKDVVIDMLCYRRRGHNEGDDPS-MTQPYMYDVIDTKRGSRKAYTEALIGRGDISMK 428 (868)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCSCSSTTCCGG-GTCHHHHHHHTTCCCHHHHHHHHHHHTTSSCHH
T ss_pred EeCCCHHHHHHHHHHHHHHHHhCCCCEEEEEEeecCCCcCcccccc-cCChHHHHHHHhCCCHHHHHHHHHHHcCCCCHH
Confidence 9999999999999999999999999999999999999999999985 566677788876789999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhC-C-CC-CCCccccccccC----CCccHHHHHHHHHHHHHhCCCCCCCCCC
Q 016909 314 IESELRSSVRKQILHALQEAEKA-E-KP-PISDLFTDVYDV----SPSNLREQEHSLRETIKKHPQDYPSNVP 379 (380)
Q Consensus 314 ~~~~i~~~~~~~v~~a~~~a~~~-~-~p-~~~~~~~~vy~~----~~~~~~~~~~~l~~~~~~~p~~~~~~~~ 379 (380)
++++|+++++++|++++++|++. | .| +. .++.++|.+ .+....+.++.+.+.+...|+.|.++.-
T Consensus 429 e~~~i~~e~~~~v~~a~~~a~~~~p~~~~~~-~~~~~~~~~~~~~~t~~~~~~l~~~~~~~~~~p~~~~~~~~ 500 (868)
T 2yic_A 429 EAEDALRDYQGQLERVFNEVRELEKHEIEPS-ESVEADQQIPSKLATAVDKAMLQRIGDAHLALPEGFTVHPR 500 (868)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC------------------CCCCCCHHHHHHHHHHTTCCCTTCCCCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCcccc-cccccccccccCCCCccCHHHHHHHHHhhccCCcccccchh
Confidence 99999999999999999999873 2 21 22 334455642 1233456777777788889999987753
No 7
>2xt6_A 2-oxoglutarate decarboxylase; lyase, KDH, KGD; HET: TPP; 2.74A {Mycobacterium smegmatis}
Probab=100.00 E-value=2.6e-59 Score=515.50 Aligned_cols=344 Identities=15% Similarity=0.138 Sum_probs=284.5
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccchhHHHHHHHHhc------CCCCcEEEc-cccchHHHHH-
Q 016909 31 VKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRISFYLTTSGEEAINIASAAA------IKNDDFVVP-QYREPGVLLW- 102 (380)
Q Consensus 31 ~~~~~~~l~~~y~~M~~~R~~e~~~~~~~~~g~i~~~~~~~GqEa~~~~~~~~------l~~~D~v~~-~yR~~~~~l~- 102 (380)
+.+|+++++++|+.|+++|.||+++..+|++|+. | ...||||++++++.+ ++++|++++ +||+|+++|+
T Consensus 358 ~~~s~e~~~~~y~~m~~~r~fE~~l~~~~~~~k~-~--g~~GqEa~~~g~~~~l~~~~~l~~~D~v~gm~hRg~~~~La~ 434 (1113)
T 2xt6_A 358 DKPTVAEQKYILSKLNAAEAFETFLQTKYVGQKR-F--SLEGAETVIPMMDAVIDQCAEHGLDEVVIAMPHRGRLNVLAN 434 (1113)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHHHHCSSCGG-G--CCTTCTTHHHHHHHHHHHHHHTTCSEEEEECCSTTHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-c--cCCChHHHHHHHHHHHHHhhhCCCCCEEEeccccchHHHHHH
Confidence 5799999999999999999999999999998875 2 238999999999777 558999998 7999999999
Q ss_pred -cCCCHHHHHHHhhcCCCCC-C-CCCCCccccCCCC------------CCcccccccccCccHHHHHHHHHhhhcC----
Q 016909 103 -RGFSMQEFANQCFGNKADY-G-KGRQMPIHYGSNK------------HNYFTVSSTIATQLPHAVGAAYALKMDR---- 163 (380)
Q Consensus 103 -~G~~~~~~l~e~~g~~~~~-~-~G~~~~~H~~~~~------------~~~~~~~g~lG~~~p~AvG~A~A~k~~~---- 163 (380)
+|++++++|+|++|+.+++ + .|+++++|++... .++.+++|+||+++|+|+|+|+|.|+++
T Consensus 435 ~~G~~~~~i~ae~~G~~~g~~~~g~gdv~~Hlg~~~~~~~~~g~~~v~l~l~~n~s~Lg~~~p~A~G~A~A~k~~~~~~~ 514 (1113)
T 2xt6_A 435 IVGKPYSQIFSEFEGNLNPSQAHGSGDVKYHLGATGTYIQMFGDNDIEVSLTANPSHLEAVDPVLEGLVRAKQDLLDTGE 514 (1113)
T ss_dssp TTCCCHHHHSTTC-------------CGGGTCCEEEEEECSSSSCEEEEEECCCCSSTTTTHHHHHHHHHHHHHHTTBST
T ss_pred HhCCCHHHHHHHhcCCCCCCccCCCCCccccCCccccccccCCCcceeeeecCCCccccccccHHHHHHHHHHHhccccC
Confidence 9999999999999999887 4 4566789987432 2456678999999999999999999865
Q ss_pred ------CCceeEEEeCcccc-CcchHHHHHHHHHHcCCC---EEEEEEcCCcceeeecccccCCcCHHHHHhhcCeeEEE
Q 016909 164 ------KDACAVTYFGDGGT-SEGDFHAALNFSAVTEAP---VIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIR 233 (380)
Q Consensus 164 ------~~~~vv~~~GDG~~-~eG~~~Eal~~A~~~~Lp---vi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~G~~~~~ 233 (380)
.+.+++|++|||++ +||.+||+||+|++|+|| +||||+||+|+++++...+.+..++.+++++|||++++
T Consensus 515 ~~~~~~~~~~~v~~~GDGa~~~eG~~~Ealn~A~~~~lp~g~vi~iv~NN~~gist~~~~~~s~~~~~~~a~a~G~p~~~ 594 (1113)
T 2xt6_A 515 EGSDNRFSVVPLMLHGDAAFAGQGVVAETLNLALLRGYRTGGTIHIVVNNQIGFTTAPTDSRSSEYCTDVAKMIGAPIFH 594 (1113)
T ss_dssp TSSBSCCCEEEEEEEEHHHHHHCTHHHHHHTTTTCTTTCCSCCEEEEEECSCBTTBCHHHHCSSSSTTGGGGGGTCCEEE
T ss_pred ccccccCCcEEEEEECCcccccccHHHHHHHHHhhcCCCCCCeEEEEEeCCcccccCccccccccCHHHHHHhcCCcEEE
Confidence 56899999999995 899999999999999998 99999999999999876555556678899999999999
Q ss_pred EeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCCCCCCCCCCCCCCChhHHHHHHhCCChHHHHHHHHHHCCCCCHH
Q 016909 234 VDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDDSTKYRPVDEIEWWRTTQDPVTRFRKWIESNGWWNGD 313 (380)
Q Consensus 234 VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R~~gHs~~Dd~~~Yr~~~e~~~~~~~~DPi~~~~~~L~~~g~~t~~ 313 (380)
|||||+++|+.+++.|++++|++++|+|||++|||++|||++|+|. ||.+++++.|++.+||+.+|+++|+++|++|++
T Consensus 595 VdG~D~~av~~a~~~A~~~~r~~~~PvlIe~~tyR~~GHs~~D~p~-~~~~~~~~~~~~~~dpi~~~~~~L~~~G~~t~e 673 (1113)
T 2xt6_A 595 VNGDDPEACAWVARLAVDFRQAFKKDVVIDMLCYRRRGHNEGDDPS-MTQPYMYDVIDTKRGSRKAYTEALIGRGDISMK 673 (1113)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCSCSSTTCCGG-GTCHHHHHHHTTCCCHHHHHHHHHHHHTSSCHH
T ss_pred EcCCCHHHHHHHHHHHHHHHHhcCCCEEEEEEeEccCCcCCCCccc-cCChHHHHHHHhcCCHHHHHHHHHHHcCCCCHH
Confidence 9999999999999999999999999999999999999999999985 555677778876789999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhC-C-CC-CCCccccccccC----CCccHHHHHHHHHHHHHhCCCCCCCCCC
Q 016909 314 IESELRSSVRKQILHALQEAEKA-E-KP-PISDLFTDVYDV----SPSNLREQEHSLRETIKKHPQDYPSNVP 379 (380)
Q Consensus 314 ~~~~i~~~~~~~v~~a~~~a~~~-~-~p-~~~~~~~~vy~~----~~~~~~~~~~~l~~~~~~~p~~~~~~~~ 379 (380)
++++|+++++++|++++++|++. | .| +. ..+.++|.+ .+....+.++.+.+.+...|+.|.++.-
T Consensus 674 e~~~i~~e~~~~v~~a~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~t~~~~~~l~~~~~~~~~~p~~~~~~~~ 745 (1113)
T 2xt6_A 674 EAEDALRDYQGQLERVFNEVRELEKHEIEPS-ESVEADQQIPSKLATAVDKAMLQRIGDAHLALPEGFTVHPR 745 (1113)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC-----------------CCCCCCHHHHHHHHHHTTCCCTTCCCCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCcccc-cccccccccccCCCCccCHHHHHHHHHhhccCCcccccchh
Confidence 99999999999999999999883 2 22 11 334456642 1233456777888888899999988753
No 8
>2jgd_A 2-oxoglutarate dehydrogenase E1 component; flavoprotein, oxidoreductase, thiamine diphosphate, thiamine pyrophosphate, adenosine monophosphate; HET: AMP; 2.6A {Escherichia coli} PDB: 2jgd_B*
Probab=100.00 E-value=3.4e-58 Score=498.34 Aligned_cols=362 Identities=13% Similarity=0.100 Sum_probs=282.8
Q ss_pred CCeeEeeCCCCC-CCCCC---CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccchhHHHHHHHHhcCC--
Q 016909 12 IPCYRVLDDDGQ-PFPDS---SFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRISFYLTTSGEEAINIASAAAIK-- 85 (380)
Q Consensus 12 ~~~~~~~~~~g~-~~~~~---~~~~~~~~~l~~~y~~M~~~R~~e~~~~~~~~~g~i~~~~~~~GqEa~~~~~~~~l~-- 85 (380)
.|.++|+|.+|+ ++.+. ..+.+++++++++|+.|+++|.||+++..+|++||. ++..|||++++|++.+++
T Consensus 170 ~e~~~i~~~~~~~w~~~~~e~~~~~~s~e~~~~~y~~m~~~r~fE~~l~~~~~~gkr---f~~~G~Ea~i~g~~~~~~~a 246 (933)
T 2jgd_A 170 AEYMHITSTEEKRWIQQRIESGRATFNSEEKKRFLSELTAAEGLERYLGAKFPGAKR---FSLEGGDALIPMLKEMIRHA 246 (933)
T ss_dssp EECSSCCCHHHHHHHHHHHCC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC--C---CCCTTCTTHHHHHHHHHHHH
T ss_pred ceeeecCCHHHhHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc---ccCCCchHHHHHHHHHHHHH
Confidence 356778888887 44321 135799999999999999999999999999999872 246899999999666554
Q ss_pred ----CCcEEEc-cccchHHHHH--cCCCHHHHHHHhhcCCCCCCCCCCCccccCCCCC----------CcccccccccCc
Q 016909 86 ----NDDFVVP-QYREPGVLLW--RGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKH----------NYFTVSSTIATQ 148 (380)
Q Consensus 86 ----~~D~v~~-~yR~~~~~l~--~G~~~~~~l~e~~g~~~~~~~G~~~~~H~~~~~~----------~~~~~~g~lG~~ 148 (380)
++|++++ +||+|+++|+ +|+++.++|+|++|+.++.+.|+++++|++.... ++.+++|++|++
T Consensus 247 ~~~g~~D~v~g~~hRg~~~~Lan~~G~~~~~i~~e~~G~~~g~~g~gdv~~Hlg~~~~~~~~gg~~~l~l~~~~shlg~~ 326 (933)
T 2jgd_A 247 GNSGTREVVLGMAHRGRLNVLVNVLGKKPQDLFDEFAGKHKEHLGTGDVKYHMGFSSDFQTDGGLVHLALAFNPSHLEIV 326 (933)
T ss_dssp HTTTCCEEEEECCSTTHHHHHHHTTCCCHHHHHHHHHTCC--CCSCCCCGGGCCEEEEEEETTEEEEEEECCCCSSTTCH
T ss_pred hhCCCCCEEecCCCcCHHHHHHHHhCCCHHHHHHHhcCCCCCCCCCCCccccCCcccccccCCCceEEeecccCcccccc
Confidence 7999996 7999999999 9999999999999999888777888999875431 235778999999
Q ss_pred cHHHHHHHHHhhhcC-----CCceeEEEeCcccc-CcchHHHHHHHHHHcCCC---EEEEEEcCCcceee-ecccccCCc
Q 016909 149 LPHAVGAAYALKMDR-----KDACAVTYFGDGGT-SEGDFHAALNFSAVTEAP---VIFICRNNGWAIST-PISDQFRSD 218 (380)
Q Consensus 149 ~p~AvG~A~A~k~~~-----~~~~vv~~~GDG~~-~eG~~~Eal~~A~~~~Lp---vi~vv~NN~~~i~~-~~~~~~~~~ 218 (380)
+|+|+|+|+|.|+++ .+.++||++|||++ ++|.+||+||+|+.+++| +||||+||+|+|++ +...+.+..
T Consensus 327 ~p~A~G~A~A~~~~~~~~~~~~~~vv~v~GDGa~a~qG~~~Ealn~A~~~~lp~gg~I~vv~nN~~~ist~~~~~~~~~~ 406 (933)
T 2jgd_A 327 SPVVIGSVRARLDRLDEPSSNKVLPITIHGDAAVTGQGVVQETLNMSKARGYEVGGTVRIVINNQVGFTTSNPLDARSTP 406 (933)
T ss_dssp HHHHHHHHHHHHTTSSSCCGGGEEEEEEEEHHHHHHCTHHHHHHHHTTSTTTCCSCCEEEEEECC---------------
T ss_pred cCHHHHHHHHHHhhccccCCCCeEEEEEECCcccccCCHHHHHHHHhhccCCCCCceEEEEEeCCccccCCCHHhcccch
Confidence 999999999999874 67899999999998 899999999999999999 99999999999999 888777777
Q ss_pred CHHHHHhhcCeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCCCCCCCCCCCCCCChhHHHHHHhCCChHH
Q 016909 219 GAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDDSTKYRPVDEIEWWRTTQDPVT 298 (380)
Q Consensus 219 ~~~~~a~a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R~~gHs~~Dd~~~Yr~~~e~~~~~~~~DPi~ 298 (380)
++++++++|||++++|||+|+++|+++++.|++++|.+++|+|||++|||++||+++|+| .||+++|++.|++.+||+.
T Consensus 407 ~~~~~a~a~g~p~~~VdG~D~~av~~a~~~A~e~~r~~~~P~lIe~~tyR~~GH~~~D~~-~yr~~~e~~~~~~~~dPi~ 485 (933)
T 2jgd_A 407 YCTDIGKMVQAPIFHVNADDPEAVAFVTRLALDFRNTFKRDVFIDLVCYRRHGHNEADEP-SATQPLMYQKIKKHPTPRK 485 (933)
T ss_dssp CGGGGGGTTTCCEEEEETTCHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCC------------CCTTHHHHHTSCCHHH
T ss_pred hHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHHHHHhcCCCEEEEEeeeeecCcCcccch-hhCCHHHHHHHHccCCHHH
Confidence 899999999999999999999999999999999999999999999999999999999986 5999999999985579999
Q ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHhC-CCCCCCcccccccc------CCCccHHHHHHHHHHHHHhCC
Q 016909 299 RFRKWIESNGWWNGDIESELRSSVRKQILHALQEAEKA-EKPPISDLFTDVYD------VSPSNLREQEHSLRETIKKHP 371 (380)
Q Consensus 299 ~~~~~L~~~g~~t~~~~~~i~~~~~~~v~~a~~~a~~~-~~p~~~~~~~~vy~------~~~~~~~~~~~~l~~~~~~~p 371 (380)
+|+++|+++|++|++++++++++++++|+++++.|++. |.|.....+..+.. ..+....+.++.+.+.+...|
T Consensus 486 ~~~~~Li~~Gv~t~~~~~~i~~~~~~~v~~a~~~A~~~~p~~~~~~~~~~~~~~~~~~~~~tg~~~~~l~~i~~~~~~~p 565 (933)
T 2jgd_A 486 IYADKLEQEKVATLEDATEMVNLYRDALDAGDCVVAEWRPMNMHSFTWSPYLNHEWDEEYPNKVEMKRLQELAKRISTVP 565 (933)
T ss_dssp HHHHHHHTTTSSCHHHHHHHHHHHHHHHHHTSCCCTTEECCCGGGCTTGGGSSCCTTCCCCCCCCHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhhcccccccccccCCCCCCCHHHHHHHHhhhcCCC
Confidence 99999999999999999999999999999999988773 33211123333221 112333455666666667788
Q ss_pred CCCCCC
Q 016909 372 QDYPSN 377 (380)
Q Consensus 372 ~~~~~~ 377 (380)
+.|.++
T Consensus 566 ~~~~~~ 571 (933)
T 2jgd_A 566 EAVEMQ 571 (933)
T ss_dssp TTSCCC
T ss_pred CCCccc
Confidence 888765
No 9
>2o1s_A 1-deoxy-D-xylulose-5-phosphate synthase; DXS, thiamine, isoprenoid, transferase; HET: TDP; 2.40A {Escherichia coli}
Probab=100.00 E-value=1.3e-32 Score=289.86 Aligned_cols=240 Identities=15% Similarity=0.140 Sum_probs=182.0
Q ss_pred CeeEeeCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccchhHHHHHHHHhcCC-CCcEEE
Q 016909 13 PCYRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRISFYLTTSGEEAINIASAAAIK-NDDFVV 91 (380)
Q Consensus 13 ~~~~~~~~~g~~~~~~~~~~~~~~~l~~~y~~M~~~R~~e~~~~~~~~~g~i~~~~~~~GqEa~~~~~~~~l~-~~D~v~ 91 (380)
|.+.+|+ +.-.+.+.++++.++|.++++.| |.+...+.. + ..+++++++|++.+.+++..+++ +.|+++
T Consensus 6 ~~~~~l~---~i~~p~d~~~l~~~~l~~l~~~i---R~~~~~~~~--~--~~Gh~~~~lg~~~~~~~l~~~~~~~~D~~v 75 (621)
T 2o1s_A 6 AKYPTLA---LVDSTQELRLLPKESLPKLCDEL---RRYLLDSVS--R--SSGHFASGLGTVELTVALHYVYNTPFDQLI 75 (621)
T ss_dssp TTSTTGG---GCSSHHHHTTSCGGGHHHHHHHH---HHHHHHHSC--G--GGCTHHHHHTTHHHHHHHHHHSCTTTSEEE
T ss_pred CCCchhh---hcCChHHhhhCCHHHHHHHHHHH---HHHHHHHHh--h--cCCCcCCChhHHHHHHHHHhccCCCCCEEE
Confidence 4444565 22233456689999999999998 655443331 2 23688899999999999999999 899999
Q ss_pred --ccccchHHHHHcCCCHHHHHHHhhcCCCCCCCCCCCccccCCC-CCCcccccccccCccHHHHHHHHHhhhcCCCcee
Q 016909 92 --PQYREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSN-KHNYFTVSSTIATQLPHAVGAAYALKMDRKDACA 168 (380)
Q Consensus 92 --~~yR~~~~~l~~G~~~~~~l~e~~g~~~~~~~G~~~~~H~~~~-~~~~~~~~g~lG~~~p~AvG~A~A~k~~~~~~~v 168 (380)
..||++++.+.+|. . +-+..++.. | +.++|+... .++...++|++|+++|+|+|+|+|.|+++++++|
T Consensus 76 ~~~gH~~y~~~~l~G~-~-~~~~~~r~~------~-g~~g~~~~~~s~~~~~~~G~~G~gl~~A~G~AlA~~~~~~~~~V 146 (621)
T 2o1s_A 76 WDVGHQAYPHKILTGR-R-DKIGTIRQK------G-GLHPFPWRGESEYDVLSVGHSSTSISAGIGIAVAAEKEGKNRRT 146 (621)
T ss_dssp ESSSTTCHHHHHTTTT-G-GGGGGTTST------T-SCCSSCCTTTCTTCCSCCSSSSCHHHHHHHHHHHHHHHTSCCCE
T ss_pred EeCchHHHHHHHHhCC-H-hhhhccccc------C-CCCCCCCCCCCCCCccCCcccchHHHHHHHHHHHHHHhCCCCeE
Confidence 67999999999997 2 223333332 2 134555432 2455567999999999999999999999999999
Q ss_pred EEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcceeeecccccCC-------------------------------
Q 016909 169 VTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRS------------------------------- 217 (380)
Q Consensus 169 v~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~i~~~~~~~~~~------------------------------- 217 (380)
||++|||++++|++||+||+|+++++|+||||+||+|++++++..+...
T Consensus 147 v~v~GDG~~~~G~~~EaL~~A~~~~~pli~vvnnN~~~i~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~p~~~~~~ 226 (621)
T 2o1s_A 147 VCVIGDGAITAGMAFEAMNHAGDIRPDMLVILNDNEMSISENVGALNNHLAQLLSGKLYSSLREGGKKVFSGVPPIKELL 226 (621)
T ss_dssp EEEEETTGGGSHHHHHHHHHHHHHCCSEEEEEEECC--------------------------------------------
T ss_pred EEEEchhhhhccHHHHHHHHHHhhCCCEEEEEeCCCcccCCCcchHHHHHHhhhcchhHHHHHHHHHHHHhccchHHHHH
Confidence 9999999999999999999999999999999999999998876532110
Q ss_pred ---cCH-------HHHHhhcCeeEE-EEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCCCCCCC
Q 016909 218 ---DGA-------VVKGRAYGVRSI-RVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTS 275 (380)
Q Consensus 218 ---~~~-------~~~a~a~G~~~~-~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R~~gHs~~ 275 (380)
.++ ..++++|||+++ +|||||++++.+++++|++ .++|+||+++|+|.+||+..
T Consensus 227 ~r~~~~~~~~~~p~~~~ea~G~~~~g~vdG~d~~~l~~al~~A~~----~~gP~lI~v~t~kg~G~~~~ 291 (621)
T 2o1s_A 227 KRTEEHIKGMVVPGTLFEELGFNYIGPVDGHDVLGLITTLKNMRD----LKGPQFLHIMTKKGRGYEPA 291 (621)
T ss_dssp ------------CHHHHHHTTCEEEEEEETTCHHHHHHHHHHHHH----SCSEEEEEEECCCTTCCCCC
T ss_pred HHHHHHhhhccChhhHHHHCCCeEeeeeCCCCHHHHHHHHHHHHH----cCCCEEEEEEEecccCCChh
Confidence 011 478999999999 9999999999999998875 47999999999999999854
No 10
>1gpu_A Transketolase; transferase(ketone residues); HET: THD; 1.86A {Saccharomyces cerevisiae} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 1ngs_A* 1trk_A* 1ay0_A* 1tkb_A* 1tka_A* 1tkc_A*
Probab=99.97 E-value=1.1e-30 Score=277.26 Aligned_cols=200 Identities=21% Similarity=0.188 Sum_probs=167.6
Q ss_pred CcEEEcc--ccc---hHHHHHcCC-CHHHHHHHhhcCCCCCCCCCCCccccCCCCCCcccccccccCccHHHHHHHHHhh
Q 016909 87 DDFVVPQ--YRE---PGVLLWRGF-SMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALK 160 (380)
Q Consensus 87 ~D~v~~~--yR~---~~~~l~~G~-~~~~~l~e~~g~~~~~~~G~~~~~H~~~~~~~~~~~~g~lG~~~p~AvG~A~A~k 160 (380)
.|.++.+ |-+ .+++...|. ...+-|..++. .|+.+++|+....+++...+|++|+++|+|+|+|+|.+
T Consensus 60 rDr~v~s~GH~~~~lYa~~~l~G~~~~~~~l~~~r~------~g~~~~ghp~~~~~g~~~~~G~lG~gl~~AvG~AlA~~ 133 (680)
T 1gpu_A 60 RDRFVLSNGHAVALLYSMLHLTGYDLSIEDLKQFRQ------LGSRTPGHPEFELPGVEVTTGPLGQGISNAVGMAMAQA 133 (680)
T ss_dssp CCEEEESSGGGHHHHHHHHHHTTCSCCHHHHTTTTC------TTCSCCSSCCTTSTTCCSCCCSTTHHHHHHHHHHHHHH
T ss_pred CCEEEEecchHHHHHHHHHHHhCCCCCHHHHHhhcc------cCCCCCCCCCccCCCeeeccccccchHHHHHHHHHHHH
Confidence 4766543 555 455666786 33444555654 25566889887678899999999999999999999998
Q ss_pred hcC----------CCceeEEEeCccccCcchHHHHHHHHHHcCCC-EEEEEEcCCcceeeecccccCCcCHHHHHhhcCe
Q 016909 161 MDR----------KDACAVTYFGDGGTSEGDFHAALNFSAVTEAP-VIFICRNNGWAISTPISDQFRSDGAVVKGRAYGV 229 (380)
Q Consensus 161 ~~~----------~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lp-vi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~G~ 229 (380)
+.+ .+++|||++|||++++|++||+|++|+.++|| +|+||+||+|++++++.... ..++.+++++|||
T Consensus 134 ~~~~~~n~~~~~~~~~~vv~i~GDG~~~eG~~~Eal~~A~~~~L~~li~i~~nN~~~i~~~~~~~~-~~d~~~~~~a~G~ 212 (680)
T 1gpu_A 134 NLAATYNKPGFTLSDNYTYVFLGDGCLQEGISSEASSLAGHLKLGNLIAIYDDNKITIDGATSISF-DEDVAKRYEAYGW 212 (680)
T ss_dssp HHHHHHCBTTBCCCCCCEEEEECHHHHHSHHHHHHHHHHHHTTCTTEEEEEEECSEETTEEGGGTC-CCCHHHHHHHHTC
T ss_pred HhccccccCccCCCCCeEEEEECCCccchhhHHHHHHHHHHhCCCcEEEEEECCCceEeccccccc-CccHHHHHHhcCC
Confidence 764 37899999999999999999999999999996 99999999999999887664 5789999999999
Q ss_pred eEE-EEeCC-CHHHHHHHHHHHHHHhhccCCcEEEEEEeecCCCCCCCCCC---CCCCChhHHHHHHhCCChH
Q 016909 230 RSI-RVDGN-DALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDDS---TKYRPVDEIEWWRTTQDPV 297 (380)
Q Consensus 230 ~~~-~VdG~-D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R~~gHs~~Dd~---~~Yr~~~e~~~~~~~~DPi 297 (380)
+++ .|||| |+.++++++++|++ ..++|+||+++|+|.+||+..|++ ..||+++|++.|++ .+++
T Consensus 213 ~~~~~vdG~~d~~~l~~al~~A~~---~~~~P~lI~~~T~kg~G~~~~~~~~~H~~~~~~ee~~~~~~-~~~~ 281 (680)
T 1gpu_A 213 EVLYVENGNEDLAGIAKAIAQAKL---SKDKPTLIKMTTTIGYGSLHAGSHSVHGAPLKADDVKQLKS-KFGF 281 (680)
T ss_dssp EEEEESCTTTCHHHHHHHHHHHHH---CTTSCEEEEEECCTTTTSTTTTSGGGSSSCCCHHHHHHHHH-HTTC
T ss_pred eEEEEecCCCCHHHHHHHHHHHHH---CCCCCEEEEEEeecccccccCCCCccCCCCCCHHHHHHHHH-HcCC
Confidence 999 99999 99999999999876 257999999999999999977653 57999999999974 5554
No 11
>3rim_A Transketolase, TK; TPP, transferase; HET: TPP; 2.49A {Mycobacterium tuberculosis}
Probab=99.97 E-value=1.6e-30 Score=275.15 Aligned_cols=181 Identities=22% Similarity=0.175 Sum_probs=153.9
Q ss_pred CcEEEc--cccc---hHHHHHcCC-CHHHHHHHhhcCCCCCCCCCCCccccCC-CCCCcccccccccCccHHHHHHHHHh
Q 016909 87 DDFVVP--QYRE---PGVLLWRGF-SMQEFANQCFGNKADYGKGRQMPIHYGS-NKHNYFTVSSTIATQLPHAVGAAYAL 159 (380)
Q Consensus 87 ~D~v~~--~yR~---~~~~l~~G~-~~~~~l~e~~g~~~~~~~G~~~~~H~~~-~~~~~~~~~g~lG~~~p~AvG~A~A~ 159 (380)
.|.++. .|-+ .+++...|+ ...+-|..|+. .|+.+++|+.. ..+++..++|++|+++|+|+|+|+|.
T Consensus 76 rDrfvls~GH~s~~lYa~l~l~G~~~~~~~l~~fr~------~gs~~~ghp~~~~~pgv~~~tG~lG~gl~~AvG~AlA~ 149 (700)
T 3rim_A 76 RDRFVLSAGHSSLTLYIQLYLGGFGLELSDIESLRT------WGSKTPGHPEFRHTPGVEITTGPLGQGLASAVGMAMAS 149 (700)
T ss_dssp CCEEEESSTTCHHHHHHHHHHTTSSCCHHHHTTTTS------TTCSCCSSCCBTTBTTCCSCCCSTTHHHHHHHHHHHHH
T ss_pred CCeEEECCCchhHHHHHHHHHhCCCCCHHHHHHhhc------CCCCCCCCCCCCCCCCccccccccCCcchHHHHHHHHH
Confidence 577664 4666 345566786 44444666665 36778899875 46788899999999999999999999
Q ss_pred hhc-------------CCCceeEEEeCccccCcchHHHHHHHHHHcCCC-EEEEEEcCCcceeeecccccCCcCHHHHHh
Q 016909 160 KMD-------------RKDACAVTYFGDGGTSEGDFHAALNFSAVTEAP-VIFICRNNGWAISTPISDQFRSDGAVVKGR 225 (380)
Q Consensus 160 k~~-------------~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lp-vi~vv~NN~~~i~~~~~~~~~~~~~~~~a~ 225 (380)
|+. +.+++|+|++|||++++|++||++|+|+.|+|| +|+||+||+|+|++++.... ..++.++++
T Consensus 150 k~~~~~~~~~~~~~~~~~~~~v~~~~GDG~l~eG~~~EAl~~A~~~~L~nli~i~d~N~~si~~~~~~~~-~~~~~~~~~ 228 (700)
T 3rim_A 150 RYERGLFDPDAEPGASPFDHYIYVIASDGDIEEGVTSEASSLAAVQQLGNLIVFYDRNQISIEDDTNIAL-CEDTAARYR 228 (700)
T ss_dssp HHHHHHHCTTSCTTCSTTCCCEEEEEEHHHHHSHHHHHHHHHHHHTTCTTEEEEEEECSEETTEEGGGTC-CCCHHHHHH
T ss_pred HHHhhhccccccccccCCCCeEEEEECCcccccChHHHHHHHHHHcCCCcEEEEEECCCcccccchhhcc-chhHHHHHH
Confidence 974 467899999999999999999999999999995 99999999999999988654 688999999
Q ss_pred hcCeeEEEE-eCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCCCCCCCCC
Q 016909 226 AYGVRSIRV-DGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDD 277 (380)
Q Consensus 226 a~G~~~~~V-dG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R~~gHs~~Dd 277 (380)
+|||++++| ||||+++|++|+++|.+ .+++|+||+++|+|.+||+...+
T Consensus 229 a~G~~~~~V~DG~D~~al~~Al~~A~~---~~~~P~lI~~~T~kG~G~~~~e~ 278 (700)
T 3rim_A 229 AYGWHVQEVEGGENVVGIEEAIANAQA---VTDRPSFIALRTVIGYPAPNLMD 278 (700)
T ss_dssp HHTCEEEEEECTTCHHHHHHHHHHHHH---CCSSCEEEEEECCTTTTCTTTTT
T ss_pred HcCCeEEEECCCCCHHHHHHHHHHHHH---cCCCCEEEEEEEEeeecCCccCC
Confidence 999999999 99999999999998875 26899999999999999986543
No 12
>1r9j_A Transketolase; domains, EACH of the alpha/beta type, thiamine diphosphate binding domain, transferase; HET: TPP; 2.22A {Leishmania mexicana mexicana} SCOP: c.36.1.6 c.36.1.10 c.48.1.1
Probab=99.97 E-value=2.7e-30 Score=273.84 Aligned_cols=195 Identities=21% Similarity=0.172 Sum_probs=162.8
Q ss_pred cEEE-c-cccc---hHHHHHcCC-CHHHHHHHhhcCCCCCCCCCCCccccCCC-CCCcccccccccCccHHHHHHHHHhh
Q 016909 88 DFVV-P-QYRE---PGVLLWRGF-SMQEFANQCFGNKADYGKGRQMPIHYGSN-KHNYFTVSSTIATQLPHAVGAAYALK 160 (380)
Q Consensus 88 D~v~-~-~yR~---~~~~l~~G~-~~~~~l~e~~g~~~~~~~G~~~~~H~~~~-~~~~~~~~g~lG~~~p~AvG~A~A~k 160 (380)
|.++ + .|-. .+++...|+ ...+-|..++. .|+.+++|+... .+++..++|+||+++|+|+|+|+|.|
T Consensus 60 Drfvls~GH~~~~lYa~l~l~G~~~~~~~l~~~r~------~~s~~~ghp~~~~~pgv~~~tG~lG~gl~~AvG~AlA~~ 133 (673)
T 1r9j_A 60 DRFVMSNGHGCALQYALLHMAGYNLTMDDLKGFRQ------DGSRTPGHPERFVTPGVEVTTGPLGQGIANAVGLAIAEA 133 (673)
T ss_dssp CEEEESSGGGHHHHHHHHHHHTCSCCHHHHHTTTS------TTCSCCSSCCTTTSTTCCSCCCSTTHHHHHHHHHHHHHH
T ss_pred CeEEEccccHHHHHHHHHHHcCCCCCHHHHHhhcc------CCCCCCCCCCCCCCCCeeeccCCCCCcHHHHHHHHHHHH
Confidence 6655 3 3555 345556787 44555666665 367788898754 57888899999999999999999998
Q ss_pred hcC----------CCceeEEEeCccccCcchHHHHHHHHHHcCCC-EEEEEEcCCcceeeecccccCCcCHHHHHhhcCe
Q 016909 161 MDR----------KDACAVTYFGDGGTSEGDFHAALNFSAVTEAP-VIFICRNNGWAISTPISDQFRSDGAVVKGRAYGV 229 (380)
Q Consensus 161 ~~~----------~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lp-vi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~G~ 229 (380)
+.+ .+++|+|++|||++++|++||++++|++++|| +|+||+||+|++++++.... ..++.+++++|||
T Consensus 134 ~~~~~~n~~g~~~~d~~v~~~~GDG~~~eG~~~Eal~~A~~~~L~~li~i~d~N~~~i~~~~~~~~-~~d~~~~~~a~G~ 212 (673)
T 1r9j_A 134 HLAATFNRPGYNIVDHYTYVYCGDGCLMEGVCQEALSLAGHLALEKLIVIYDSNYISIDGSTSLSF-TEQCHQKYVAMGF 212 (673)
T ss_dssp HHHHHHCBTTBCCCCCCEEEEECHHHHHSHHHHHHHHHHHHHTCTTEEEEEEECSBCSSSBGGGTC-CCCHHHHHHHTTC
T ss_pred HhhhhccccccCCCCCEEEEEECcchhcccHHHHHHHHHHHhCCCcEEEEEECCCCccccchhhcc-CHhHHHHHHHCCC
Confidence 764 58899999999999999999999999999995 99999999999999988776 6899999999999
Q ss_pred eEE-EEeC-CCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCCCCCCCCC---CCCCCChhHHHHHHh
Q 016909 230 RSI-RVDG-NDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDD---STKYRPVDEIEWWRT 292 (380)
Q Consensus 230 ~~~-~VdG-~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R~~gHs~~Dd---~~~Yr~~~e~~~~~~ 292 (380)
+++ .||| ||++++++|+++|.+ ..++|+||+++|+|.+||+..|. +..+++++|++.|++
T Consensus 213 ~~~~~vdG~~d~~~l~~Al~~A~~---~~~~P~lI~~~T~kg~G~~~~~~~~~H~~~~~~ee~~~~~~ 277 (673)
T 1r9j_A 213 HVIEVKNGDTDYEGLRKALAEAKA---TKGKPKMIVQTTTIGFGSSKQGTEKVHGAPLGEEDIANIKA 277 (673)
T ss_dssp EEEEESCTTTCHHHHHHHHHHHHH---CCSSCEEEEEECCTTTTSTTTTSGGGTSSCCCHHHHHHHHH
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHH---cCCCCEEEEEecccccccccCCCcccccCCCCHHHHHHHHH
Confidence 999 8999 999999999998875 26899999999999999985443 234678889888863
No 13
>2e6k_A Transketolase; structural genomics, NPPSFA, national project protein structural and functional analyses; 2.09A {Thermus thermophilus}
Probab=99.97 E-value=3.2e-31 Score=280.28 Aligned_cols=198 Identities=22% Similarity=0.182 Sum_probs=164.6
Q ss_pred cEEEc--cccc---hHHHHHcCC-CHHHHHHHhhcCCCCCCCCCCCccccCCC-CCCcccccccccCccHHHHHHHHHhh
Q 016909 88 DFVVP--QYRE---PGVLLWRGF-SMQEFANQCFGNKADYGKGRQMPIHYGSN-KHNYFTVSSTIATQLPHAVGAAYALK 160 (380)
Q Consensus 88 D~v~~--~yR~---~~~~l~~G~-~~~~~l~e~~g~~~~~~~G~~~~~H~~~~-~~~~~~~~g~lG~~~p~AvG~A~A~k 160 (380)
|.++. .|-+ .+++...|. ...+-|..++.. |+..++|+... .+++...+|++|+++|.|+|+|+|.+
T Consensus 62 Dr~vls~GH~~~~lYa~l~l~G~~~~~~~l~~~r~~------~~~~~ghp~~~~~~g~~~~~G~lG~gl~~AvG~A~A~~ 135 (651)
T 2e6k_A 62 DRFVLSAGHGSMLLYAVLHLTGYDLPLEELKSFRQW------GSKTPGHPERGHTPGVEVTTGPLGQGISTAVGLALAER 135 (651)
T ss_dssp CEEEESSGGGHHHHHHHHHHTTCSCCHHHHTTTTST------TCSCCSSCCBTTBTTCCSCCCSTTHHHHHHHHHHHHHH
T ss_pred CeEEEeCcchhHHHHHHHHHhCCCCCHHHHHHhhcc------CCCCCCCCCCCCCCCeeeccccccchHHHHHHHHHHHH
Confidence 66553 3666 455666786 444445556542 55557787643 46888899999999999999999998
Q ss_pred hcC----------CCceeEEEeCccccCcchHHHHHHHHHHcCCC-EEEEEEcCCcceeeecccccCCcCHHHHHhhcCe
Q 016909 161 MDR----------KDACAVTYFGDGGTSEGDFHAALNFSAVTEAP-VIFICRNNGWAISTPISDQFRSDGAVVKGRAYGV 229 (380)
Q Consensus 161 ~~~----------~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lp-vi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~G~ 229 (380)
+.+ .+++|||++|||++++|++||+|++|++++|| +|+||+||+|++++++.... ..++.+++++|||
T Consensus 136 ~~~~~~~~~~~~~~~~~v~~~~GDG~~~eG~~~Eal~~A~~~~L~~li~i~~nN~~~i~~~~~~~~-~~d~~~~~~a~G~ 214 (651)
T 2e6k_A 136 KLAAEFNRPGHVVVDHYTYVLASDGDLMEGVSGEAASLAGHWGLSKLIVFWDDNRISIDGPTDLAF-TEDVLARYRAYGW 214 (651)
T ss_dssp HHHHHHCBTTBCCCCCCEEEEECHHHHHSHHHHHHHHHHHHTTCTTEEEEEEECCEETTEEGGGTC-CSCHHHHHHHTTC
T ss_pred hhcccccccccCCCCCEEEEEEChhhhchhHHHHHHHHHHHcCCCeEEEEEECCCccccccccccc-CccHHHHHHhCCC
Confidence 765 68899999999999999999999999999996 99999999999999888766 6789999999999
Q ss_pred eEE-EEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCCCCCCCCCCCCC----CChhHHHHHHhCCChHH
Q 016909 230 RSI-RVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDDSTKY----RPVDEIEWWRTTQDPVT 298 (380)
Q Consensus 230 ~~~-~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R~~gHs~~Dd~~~Y----r~~~e~~~~~~~~DPi~ 298 (380)
+++ +|||||+.++++++++|++ .++|+||+++|+|.+||+ .+++..| ++++|+++|+ +++|+.
T Consensus 215 ~~~~~vdG~d~~~l~~al~~a~~----~~~P~lI~~~t~kg~G~~-~~~~~~~H~~~~~~~e~~~~~-~~~~~~ 282 (651)
T 2e6k_A 215 QTLRVEDVNDLEALRKAIKLAKL----DERPTLIAVRSHIGFGSP-KQDSAKAHGEPLGPEAVEATR-RNLGWP 282 (651)
T ss_dssp EEEEESCTTCHHHHHHHHHHHHH----SSSCEEEEEECCTTTTST-TTTSGGGTSSCCHHHHHHHHH-HHHTCC
T ss_pred eEEEEeCCCCHHHHHHHHHHHHH----CCCCEEEEEEeEeccccc-ccccccccccCCCHHHHHHHH-HHcCCC
Confidence 999 9999999999999998875 579999999999999999 5555555 5788999997 477764
No 14
>3mos_A Transketolase, TK; thiamin diphosphate TPP THDP enzyme catalysis sugar metaboli transferase; HET: TPP; 1.75A {Homo sapiens} PDB: 3ooy_A*
Probab=99.97 E-value=8.3e-30 Score=267.69 Aligned_cols=233 Identities=20% Similarity=0.180 Sum_probs=174.5
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccchh-HHHHHHHHhcCC---------CCcEEEcc--ccch--
Q 016909 32 KVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRISFYLTTSGE-EAINIASAAAIK---------NDDFVVPQ--YREP-- 97 (380)
Q Consensus 32 ~~~~~~l~~~y~~M~~~R~~e~~~~~~~~~g~i~~~~~~~Gq-Ea~~~~~~~~l~---------~~D~v~~~--yR~~-- 97 (380)
.+++....++-+....+|.+=-.+......|.++. ++|- |...+-....|+ +.|.++.+ |-+.
T Consensus 4 ~~~~~~~~~l~~~a~~iR~~~i~~~~~~~~GH~g~---~l~~~e~~~~L~~~~~~~~~~~p~~~~rDr~v~s~GH~~~~l 80 (616)
T 3mos_A 4 KPDQQKLQALKDTANRLRISSIQATTAAGSGHPTS---CCSAAEIMAVLFFHTMRYKSQDPRNPHNDRFVLSKGHAAPIL 80 (616)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSCHHH---HHTTHHHHHHHHHTTCBCCTTCTTCTTSCEEEESSGGGHHHH
T ss_pred cccccCHHHHHHHHHHHHHHHHHHHHhcCCCcCCc---chhHHHHHHHHHHHhhccCCCCCCCCCCCeEEEcCccHHHHH
Confidence 45555555555555566665444433333455432 2332 333222223442 25776653 5552
Q ss_pred -HHHHHcCCCHHHHHHHhhcCCCCCCCCCCCccccCCCCCCcccccccccCccHHHHHHHHHhhhcCC-CceeEEEeCcc
Q 016909 98 -GVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRK-DACAVTYFGDG 175 (380)
Q Consensus 98 -~~~l~~G~~~~~~l~e~~g~~~~~~~G~~~~~H~~~~~~~~~~~~g~lG~~~p~AvG~A~A~k~~~~-~~~vv~~~GDG 175 (380)
+++...|+...+-|..++. .|+++++|+....+++..++|++|+++|+|+|+|+|.++.+. +++|||++|||
T Consensus 81 y~~~~l~G~~~~~~l~~~r~------~~s~l~ghp~~~~~~~d~~~G~lG~gl~~A~G~AlA~~~~~~~~~~vv~v~GDG 154 (616)
T 3mos_A 81 YAVWAEAGFLAEAELLNLRK------ISSDLDGHPVPKQAFTDVATGSLGQGLGAACGMAYTGKYFDKASYRVYCLLGDG 154 (616)
T ss_dssp HHHHHHTTSSCGGGGGGTTC------TTCSCCSSCCTTSTTCSSCCCSTTCHHHHHHHHHHHHHHTSCCSCCEEEEEETG
T ss_pred HHHHHHcCCCCHHHHHHhcc------CCCCCCCCCCCCCCcccccccccCCccHHHHHHHHHHHHhCCCCCEEEEEECcc
Confidence 3555678644444556654 377889998866677777899999999999999999986555 68999999999
Q ss_pred ccCcchHHHHHHHHHHcCCC-EEEEEEcCCcceeeecccccCCcCHHHHHhhcCeeEEEEeCCCHHHHHHHHHHHHHHhh
Q 016909 176 GTSEGDFHAALNFSAVTEAP-VIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAI 254 (380)
Q Consensus 176 ~~~eG~~~Eal~~A~~~~Lp-vi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~A~~~ar 254 (380)
++++|++||+|++|+.++|| +|+|++||+|++++++.......++.+++++|||++++|||||++++.++++++
T Consensus 155 ~~~eG~~~Eal~~A~~~~l~~livi~nnN~~~i~~~~~~~~~~~~~~~~~~a~G~~~~~VdG~d~~~l~~al~~~----- 229 (616)
T 3mos_A 155 ELSEGSVWEAMAFASIYKLDNLVAILDINRLGQSDPAPLQHQMDIYQKRCEAFGWHAIIVDGHSVEELCKAFGQA----- 229 (616)
T ss_dssp GGGSHHHHHHHHHHHHTTCTTEEEEEEECSBCSSSBCTTTTCHHHHHHHHHHTTCEEEEEETTCHHHHHHHHHSC-----
T ss_pred ccccCcHHHHHHHHHHcCCCcEEEEEECCCCCCcCCcccccChHHHHHHHHHcCCeEEEEcCCCHHHHHHHHHhc-----
Confidence 99999999999999999996 889999999999998877766678999999999999999999999999988543
Q ss_pred ccCCcEEEEEEeecCCCCCCCCCCC
Q 016909 255 GEGRPILIEALTYRVGHHTTSDDST 279 (380)
Q Consensus 255 ~~~gP~lIe~~t~R~~gHs~~Dd~~ 279 (380)
.++|+||+++|+|.+||+..+++.
T Consensus 230 -~~~P~lI~v~T~kg~G~~~~e~~~ 253 (616)
T 3mos_A 230 -KHQPTAIIAKTFKGRGITGVEDKE 253 (616)
T ss_dssp -CSSCEEEEEECCTTTTSTTTTTCS
T ss_pred -CCCCEEEEEEEecccccccccCch
Confidence 579999999999999998776654
No 15
>1itz_A Transketolase; calvin cycle, cofactor, thiamine pyrophosphate, plant, transferase; HET: TPP; 2.30A {Zea mays} SCOP: c.36.1.6 c.36.1.10 c.48.1.1
Probab=99.97 E-value=6.9e-29 Score=263.29 Aligned_cols=245 Identities=20% Similarity=0.144 Sum_probs=183.3
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccchhHHHHHHHH---hcCC-------CCcEEEc--cccc--
Q 016909 31 VKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRISFYLTTSGEEAINIASA---AAIK-------NDDFVVP--QYRE-- 96 (380)
Q Consensus 31 ~~~~~~~l~~~y~~M~~~R~~e~~~~~~~~~g~i~~~~~~~GqEa~~~~~~---~~l~-------~~D~v~~--~yR~-- 96 (380)
+.|+.++|.++ ...+|.+--.+......|.++ +++|.--+.+++- ..++ +.|.++. .|-+
T Consensus 9 ~~l~~~~l~~~---a~~iR~~~~~~v~~a~~GH~g---~~l~~~~i~~~L~~~~~~~~p~~p~~~~rDr~vls~GH~~~~ 82 (675)
T 1itz_A 9 KAATGELLEKS---VNTIRFLAIDAVEKANSGHPG---LPMGCAPMGHVLYDEVMRYNPKNPYWFNRDRFVLSAGHGCML 82 (675)
T ss_dssp -CCCHHHHHHH---HHHHHHHHHHHHHHHTCSCCH---HHHHHHHHHHHHHHHTCCCCTTCTTCTTCCEEEESSGGGHHH
T ss_pred CCCCHHHHHHH---HHHHHHHHHHHHHHcCCCccC---ccHhHHHHHHHHHHHHhcCCcCCCCCCCCCeEEEcCcchHHH
Confidence 47888888754 334455433344333455543 3344333333333 1232 2366553 3666
Q ss_pred -hHHHHHcCC--CHHHHHHHhhcCCCCCCCCCCCccccCCC-CCCcccccccccCccHHHHHHHHHhhhcC---------
Q 016909 97 -PGVLLWRGF--SMQEFANQCFGNKADYGKGRQMPIHYGSN-KHNYFTVSSTIATQLPHAVGAAYALKMDR--------- 163 (380)
Q Consensus 97 -~~~~l~~G~--~~~~~l~e~~g~~~~~~~G~~~~~H~~~~-~~~~~~~~g~lG~~~p~AvG~A~A~k~~~--------- 163 (380)
.+++...|. ...+-|..++.. |+..++|+... .+++..++|++|+++|+|+|+|+|.|+.+
T Consensus 83 lYa~l~l~G~~~~~~~~l~~~r~~------~~~~~ghp~~~~~~~~~~~~G~lG~gl~~AvG~AlA~~~~~~~~n~~~~~ 156 (675)
T 1itz_A 83 QYALLHLAGYDSVKEEDLKQFRQW------GSRTPGHPENFETPGVEVTTGPLGQGIANAVGLALAEKHLAARFNKPDSE 156 (675)
T ss_dssp HHHHHHHHTCTTCCHHHHTTTTST------TCSSCSSCCTTTCTTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBC
T ss_pred HHHHHHHcCCCCCCHHHHHhcccC------CCCCCCCCCCCCCCCeeECCccHHhHHHHHHHHHHHhhhhcccccccccC
Confidence 455566776 344445556542 55667888753 57888899999999999999999998765
Q ss_pred -CCceeEEEeCccccCcchHHHHHHHHHHcCC-CEEEEEEcCCcceeeecccccCCcCHHHHHhhcCeeEE-EEeCC-CH
Q 016909 164 -KDACAVTYFGDGGTSEGDFHAALNFSAVTEA-PVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSI-RVDGN-DA 239 (380)
Q Consensus 164 -~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~L-pvi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~G~~~~-~VdG~-D~ 239 (380)
++++|||++|||++++|++||+|++|+.++| |+|+||+||+|++++++.... ..++.+++++|||+++ .|||| |+
T Consensus 157 ~~~~~v~~i~GDG~~~eG~~~Eal~~A~~~~L~~li~i~~nN~~~i~~~~~~~~-~~d~~~~~~a~G~~~~~~vdG~~d~ 235 (675)
T 1itz_A 157 IVDHYTYVILGDGCQMEGIANEACSLAGHWGLGKLIAFYDDNHISIDGDTEIAF-TEDVSTRFEALGWHTIWVKNGNTGY 235 (675)
T ss_dssp CCCCCEEEEECHHHHHSHHHHHHHHHHHHTTCTTEEEEEEECSEETTEEGGGTC-CSCHHHHHHHTTCEEEEESCTTTCH
T ss_pred CCCCEEEEEECHhHhchhHHHHHHHHHHHhCCCcEEEEEECCCccCCCChhhhc-ChhHHHHHHhCCCEEEEEecCCCCH
Confidence 6889999999999999999999999999999 799999999999999887765 7889999999999999 89999 99
Q ss_pred HHHHHHHHHHHHHhhccCCcEEEEEEeecCCCCCCCCCCC----CCCChhHHHHHH
Q 016909 240 LAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDDST----KYRPVDEIEWWR 291 (380)
Q Consensus 240 ~av~~a~~~A~~~ar~~~gP~lIe~~t~R~~gHs~~Dd~~----~Yr~~~e~~~~~ 291 (380)
+++++++++|++. .++|+||+++|+|.+||+..+++. .+.+++|++.++
T Consensus 236 ~~l~~al~~a~~~---~~~P~lI~~~T~kg~G~~~~~~~~~~H~~~~~~e~~~~~~ 288 (675)
T 1itz_A 236 DDIRAAIKEAKAV---TDKPTLIKVTTTIGFGSPNKANSYSVHGSALGAKEVEATR 288 (675)
T ss_dssp HHHHHHHHHHHHC---CSSCEEEEEECCTTTTCTTTTTSGGGTSSCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHC---CCCeEEEEEeeecccCcccccCcccccCCCCCHHHHHHHH
Confidence 9999999988752 579999999999999998654433 245677777775
No 16
>2o1x_A 1-deoxy-D-xylulose-5-phosphate synthase; thiamin, isoprenoid, DXS, transferase; HET: TDP; 2.90A {Deinococcus radiodurans}
Probab=99.97 E-value=1.1e-30 Score=275.45 Aligned_cols=224 Identities=16% Similarity=0.123 Sum_probs=172.9
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccchhHHHHHHHHhcCC-CCcEEEccccchH---HHHHc
Q 016909 28 SSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRISFYLTTSGEEAINIASAAAIK-NDDFVVPQYREPG---VLLWR 103 (380)
Q Consensus 28 ~~~~~~~~~~l~~~y~~M~~~R~~e~~~~~~~~~g~i~~~~~~~GqEa~~~~~~~~l~-~~D~v~~~yR~~~---~~l~~ 103 (380)
.+.+.++.++|.++|+.| |.+...+. .+ ..|++++++|+-.+..++...++ +.|+++.. |||+ +.+..
T Consensus 20 ~d~~~l~~~~l~~l~~~i---R~~~~~~~---~~-~~Gh~~~~lg~v~l~~aL~~~~~~~~D~~v~~-~GH~~y~~~~l~ 91 (629)
T 2o1x_A 20 KDLKRLSREQLPALTEEL---RGEIVRVC---SR-GGLHLASSLGAVDIITALHYVLDSPRDRILFD-VGHQAYAHKILT 91 (629)
T ss_dssp HHHTTSCGGGHHHHHHHH---HHHHHHHH---TT-SSSCHHHHHHTHHHHHHHHHHSCTTTSEEEES-SSTTCHHHHHTT
T ss_pred hhhhhCCHHHHHHHHHHH---HHHHHHHH---Hh-cCCcCCCchhHHHHHHHHHhhcCCCCCeEEec-CchHHHHHHHHh
Confidence 345679999999999999 54433322 22 24688899999666555555568 89999998 9985 67777
Q ss_pred CC-CHHHHHHHhhcCCCCCCCCCCCccccCC-CCCCcccccccccCccHHHHHHHHHhhhcCCCceeEEEeCccccCcch
Q 016909 104 GF-SMQEFANQCFGNKADYGKGRQMPIHYGS-NKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGD 181 (380)
Q Consensus 104 G~-~~~~~l~e~~g~~~~~~~G~~~~~H~~~-~~~~~~~~~g~lG~~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~ 181 (380)
|. +.-..+.++.| .++|+.. ..++..+.+|++|+++|+|+|+|+|.|+++++++|||++|||++++|+
T Consensus 92 G~~~~~~~~r~~~g----------~~G~p~~~~s~~~~~~~G~~G~gl~~AvG~AlA~k~~~~~~~Vv~v~GDG~~~~G~ 161 (629)
T 2o1x_A 92 GRRDQMADIKKEGG----------ISGFTKVSESEHDAITVGHASTSLTNALGMALARDAQGKDFHVAAVIGDGSLTGGM 161 (629)
T ss_dssp TTGGGGGGTTSTTS----------CCSSCCGGGCTTCCSCCSSSSCHHHHHHHHHHHHHHHTCCCCEEEEEETTGGGSHH
T ss_pred CcHhHHhCcccCCC----------CCCCCCCCCCCCCCcCCCcccccHhHHHHHHHHHHHhCCCCeEEEEEchhhhhccH
Confidence 86 22222333333 1233321 123556779999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCCEEEEEEcCCcceeeecccccC--------------------------C---------cC-H-----
Q 016909 182 FHAALNFSAVTEAPVIFICRNNGWAISTPISDQFR--------------------------S---------DG-A----- 220 (380)
Q Consensus 182 ~~Eal~~A~~~~Lpvi~vv~NN~~~i~~~~~~~~~--------------------------~---------~~-~----- 220 (380)
+||+||+|+++++|+||||+||+|++++++..+.. . .+ +
T Consensus 162 ~~EaL~~A~~~~~pli~IvnnN~~~i~~~~~~~~~~~~~l~~~~~y~~~~~~~~~~~~~~g~~~~~~~~~~~d~~~~~~~ 241 (629)
T 2o1x_A 162 ALAALNTIGDMGRKMLIVLNDNEMSISENVGAMNKFMRGLQVQKWFQEGEGAGKKAVEAVSKPLADFMSRAKNSTRHFFD 241 (629)
T ss_dssp HHHHHHHHHHHCCSEEEEEEECSBSSSBCCSSHHHHC-------------------------------------------
T ss_pred HHHHHHHHHhhCCCEEEEEECCCCCCCCChhHHHHHHHHHhhchhHHHHHHHHHHHHhccchHHHHHHHHHHHHHHhhcC
Confidence 99999999999999999999999999876642100 0 03 2
Q ss_pred -H--HHHhhcCeeEE-EEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCCCCC
Q 016909 221 -V--VKGRAYGVRSI-RVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHT 273 (380)
Q Consensus 221 -~--~~a~a~G~~~~-~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R~~gHs 273 (380)
. +++++|||+++ +|||||++++.+++++|++ .++|+||+++|++..||+
T Consensus 242 p~~~~~~ea~G~~~~g~vdG~d~~~l~~al~~A~~----~~~P~lI~v~t~kg~G~~ 294 (629)
T 2o1x_A 242 PASVNPFAAMGVRYVGPVDGHNVQELVWLLERLVD----LDGPTILHIVTTKGKGLS 294 (629)
T ss_dssp --CCCTTGGGTCEEEEEEESSCHHHHHHHHHHHTT----SSSEEEEEEECCTTTTCH
T ss_pred cccchHHHhcCCeEEeeECCcCHHHHHHHHHHHHh----cCCCEEEEEEEecCCCCC
Confidence 3 78999999999 9999999999999988754 579999999999999987
No 17
>2r8o_A Transketolase 1, TK 1; reaction intermediate, calcium, metal-binding, thiamine pyrophosphate, transferase; HET: T5X; 1.47A {Escherichia coli K12} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 2r5n_A* 2r8p_A* 1qgd_A*
Probab=99.96 E-value=1.1e-28 Score=261.48 Aligned_cols=196 Identities=23% Similarity=0.227 Sum_probs=161.8
Q ss_pred CcEEEc--cccc---hHHHHHcCC-CHHHHHHHhhcCCCCCCCCCCCccccCCC-CCCcccccccccCccHHHHHHHHHh
Q 016909 87 DDFVVP--QYRE---PGVLLWRGF-SMQEFANQCFGNKADYGKGRQMPIHYGSN-KHNYFTVSSTIATQLPHAVGAAYAL 159 (380)
Q Consensus 87 ~D~v~~--~yR~---~~~~l~~G~-~~~~~l~e~~g~~~~~~~G~~~~~H~~~~-~~~~~~~~g~lG~~~p~AvG~A~A~ 159 (380)
.|.++. .|-+ .+++...|. ...+-|..++.. |+..++|+... .+++...+|++|+++|.|+|+|+|.
T Consensus 57 rDr~v~s~GH~~~~lYa~~~l~G~~~~~~~l~~~r~~------~~~~~ghp~~~~~~g~~~~~G~lG~gl~~AvG~AlA~ 130 (669)
T 2r8o_A 57 RDRFVLSNGHGSMLIYSLLHLTGYDLPMEELKNFRQL------HSKTPGHPEVGYTAGVETTTGPLGQGIANAVGMAIAE 130 (669)
T ss_dssp CCEEEESSGGGHHHHHHHHHHHTCSCCHHHHTTTTST------TCSCCSSCCTTTSTTCCSCCCSTTHHHHHHHHHHHHH
T ss_pred CCeEEEeCccHHHHHHHHHHHcCCCCCHHHHHHhhcC------CCCCCCCCCccCCCCcccccccccchHHHHHHHHHHH
Confidence 465544 3655 455566776 334445555542 55557888643 5788899999999999999999999
Q ss_pred hhcC----------CCceeEEEeCccccCcchHHHHHHHHHHcCCC-EEEEEEcCCcceeeecccccCCcCHHHHHhhcC
Q 016909 160 KMDR----------KDACAVTYFGDGGTSEGDFHAALNFSAVTEAP-VIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 228 (380)
Q Consensus 160 k~~~----------~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lp-vi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~G 228 (380)
++.+ .+++|||++|||++++|++||+|++|+.++|| +|+||+||+|++++++.... ..++.+++++||
T Consensus 131 ~~~~~~~n~~~~~~~~~~v~~~~GDG~~~eG~~~Eal~~A~~~~L~~li~i~~nN~~~i~~~~~~~~-~~d~~~~~~a~G 209 (669)
T 2r8o_A 131 KTLAAQFNRPGHDIVDHYTYAFMGDGCMMEGISHEVCSLAGTLKLGKLIAFYDDNGISIDGHVEGWF-TDDTAMRFEAYG 209 (669)
T ss_dssp HHHHHHHCBTTBCCCCCCEEEEECHHHHHSHHHHHHHHHHHHTTCTTEEEEEEECSEETTEEGGGTC-CCCHHHHHHHTT
T ss_pred HHhccccccCccCCcCCeEEEEECHhHhcchHHHHHHHHHHHcCCCcEEEEEECCCcEecccccccc-CccHHHHHHHCC
Confidence 8654 37899999999999999999999999999996 99999999999999887654 578999999999
Q ss_pred eeEE-EEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCCCCCC-CCCC---CCCCChhHHHHHHh
Q 016909 229 VRSI-RVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTT-SDDS---TKYRPVDEIEWWRT 292 (380)
Q Consensus 229 ~~~~-~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R~~gHs~-~Dd~---~~Yr~~~e~~~~~~ 292 (380)
|+++ +|||||+.++++++++|.+ ..++|+||+++|+|..||+. .+++ ..||+++|++.|++
T Consensus 210 ~~~~~~vdG~d~~~l~~al~~a~~---~~~~P~lI~~~T~kg~G~~~~~~~~~~H~~~~~~ee~~~~~~ 275 (669)
T 2r8o_A 210 WHVIRDIDGHDAASIKRAVEEARA---VTDKPSLLMCKTIIGFGSPNKAGTHDSHGAPLGDAEIALTRE 275 (669)
T ss_dssp CEEEEEEETTCHHHHHHHHHHHHH---CCSSCEEEEEECCTTTTCTTTTTSGGGTSSCCCHHHHHHHHH
T ss_pred CeEEeEECCCCHHHHHHHHHHHHh---cCCCCEEEEEEeEeccCcCCcCCCCcccCCCCCHHHHHHHHH
Confidence 9999 9999999999999999876 25799999999999999994 4443 57999999999863
No 18
>3l84_A Transketolase; TKT, structural genomics, center for structur genomics of infectious diseases, csgid, transferase; HET: MSE; 1.36A {Campylobacter jejuni} PDB: 3m6l_A* 3m34_A* 3m7i_A*
Probab=99.96 E-value=1.2e-27 Score=251.17 Aligned_cols=218 Identities=21% Similarity=0.204 Sum_probs=168.2
Q ss_pred HHHHHHHHHHHHHhcCCcccccccchhHHHHHHHHhcCC---------CCcEEEcc--ccc---hHHHHHcCC-CHHHHH
Q 016909 47 TLQTMDTIFYEAQRQGRISFYLTTSGEEAINIASAAAIK---------NDDFVVPQ--YRE---PGVLLWRGF-SMQEFA 111 (380)
Q Consensus 47 ~~R~~e~~~~~~~~~g~i~~~~~~~GqEa~~~~~~~~l~---------~~D~v~~~--yR~---~~~~l~~G~-~~~~~l 111 (380)
.+|.+=-.+......|.++ +++|---+.+++...|+ +.|.++.+ |-+ .++++..|+ ...+-|
T Consensus 12 ~iR~~~i~~v~~a~~GH~g---~~lg~~ei~~~L~~~~~~~p~~p~~~~rDrfvls~GH~~~~lYa~l~l~G~~~~~~~l 88 (632)
T 3l84_A 12 TLRFLSADMVQKANSGHPG---APLGLADILSVLSYHLKHNPKNPTWLNRDRLVFSGGHASALLYSFLHLSGYDLSLEDL 88 (632)
T ss_dssp HHHHHHHHHHHHHTCSCCH---HHHHHHHHHHHHTTTCCCCTTCTTCTTSCEEEESSGGGHHHHHHHHHHHTCSCCHHHH
T ss_pred HHHHHHHHHHHhcCCCCCC---cChhHHHHHHHHHHHhCcCCCCCCCCCCCEEEEcCCcccHHHHHHHHHhCCCCCHHHH
Confidence 3454433333322345433 34444444445555564 46777653 666 456666786 444446
Q ss_pred HHhhcCCCCCCCCCCCccccCCCCCCcccccccccCccHHHHHHHHHhhhcCC-------CceeEEEeCccccCcchHHH
Q 016909 112 NQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRK-------DACAVTYFGDGGTSEGDFHA 184 (380)
Q Consensus 112 ~e~~g~~~~~~~G~~~~~H~~~~~~~~~~~~g~lG~~~p~AvG~A~A~k~~~~-------~~~vv~~~GDG~~~eG~~~E 184 (380)
..++. .|+..++|+....+++..++|++|+++|+|+|+|+|.++.+. +++|||++|||++++|++||
T Consensus 89 ~~~r~------~~s~~~ghp~~~~~g~~~~tG~lG~gl~~AvG~AlA~~~~~~~~n~~~~d~~v~~v~GDG~~~eG~~~E 162 (632)
T 3l84_A 89 KNFRQ------LHSKTPGHPEISTLGVEIATGPLGQGVANAVGFAMAAKKAQNLLGSDLIDHKIYCLCGDGDLQEGISYE 162 (632)
T ss_dssp TTTTC------TTCSSCSSCCTTSTTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCTTTCCCCEEEEEEHHHHHSHHHHH
T ss_pred HHHhc------CCCCCCCCCCCCCCCcccCCcchhhHHHHHHHHHHHHHhhccccccCCCCCeEEEEECCcchhhccHHH
Confidence 66654 255567888766678888999999999999999999997653 88999999999999999999
Q ss_pred HHHHHHHcCCC-EEEEEEcCCcceeeecccccCCcCHHHHHhhcCeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEE
Q 016909 185 ALNFSAVTEAP-VIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIE 263 (380)
Q Consensus 185 al~~A~~~~Lp-vi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe 263 (380)
++++|++++|| +|+|++||+|++++++.... .+++.+++++|||++++|||||++++.+++++|.+ .++|+||+
T Consensus 163 al~~A~~~~L~~livi~nnN~~~i~~~~~~~~-~~d~~~~~~a~G~~~~~vdGhd~~~l~~al~~A~~----~~~P~lI~ 237 (632)
T 3l84_A 163 ACSLAGLHKLDNFILIYDSNNISIEGDVGLAF-NENVKMRFEAQGFEVLSINGHDYEEINKALEQAKK----STKPCLII 237 (632)
T ss_dssp HHHHHHHTTCTTEEEEEEECSEETTEEGGGTC-CCCHHHHHHHTTCEEEEEETTCHHHHHHHHHHHHT----CSSCEEEE
T ss_pred HHHHHHHcCCCcEEEEEECCCcccccchhhhc-ChhHHHHHHHcCCeEEEEeeCCHHHHHHHHHHHHh----CCCCEEEE
Confidence 99999999995 99999999999999887654 57899999999999999999999999999887754 68999999
Q ss_pred EEeecCCCCCCCCCC
Q 016909 264 ALTYRVGHHTTSDDS 278 (380)
Q Consensus 264 ~~t~R~~gHs~~Dd~ 278 (380)
++|++.+||+...++
T Consensus 238 v~T~kG~G~~~~e~~ 252 (632)
T 3l84_A 238 AKTTIAKGAGELEGS 252 (632)
T ss_dssp EECCTTTTCGGGTTC
T ss_pred EeeEeeecCCCCCCc
Confidence 999999999865443
No 19
>3uk1_A Transketolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, thiamine pyrophosphate; 2.15A {Burkholderia thailandensis} PDB: 3upt_A*
Probab=99.96 E-value=2e-28 Score=259.87 Aligned_cols=193 Identities=24% Similarity=0.233 Sum_probs=145.1
Q ss_pred CcEEEcc--ccc---hHHHHHcCC-CHHHHHHHhhcCCCCCCCCCCCccccCC-CCCCcccccccccCccHHHHHHHHHh
Q 016909 87 DDFVVPQ--YRE---PGVLLWRGF-SMQEFANQCFGNKADYGKGRQMPIHYGS-NKHNYFTVSSTIATQLPHAVGAAYAL 159 (380)
Q Consensus 87 ~D~v~~~--yR~---~~~~l~~G~-~~~~~l~e~~g~~~~~~~G~~~~~H~~~-~~~~~~~~~g~lG~~~p~AvG~A~A~ 159 (380)
.|.++.+ |-+ .+++...|+ ...+-|..|+.. |+..++|+.. ..+++..++|++|+++|+|+|+|+|.
T Consensus 98 rDrfvls~GH~s~~lYa~l~l~G~~~~~~~l~~~r~~------~s~~~ghp~~~~~~gve~~tG~lG~gl~~AvG~AlA~ 171 (711)
T 3uk1_A 98 RDRFVLSNGHGSMLLYSLLHLTGYDLPIEELKNFRQL------HSKTPGHPEYGITPGVETTTGPLGQGLANAVGMALGE 171 (711)
T ss_dssp CCEEEECSGGGHHHHHHHHHHHTCSCCHHHHHTTTST------TCSCCSSCCTTTSTTCCSCCCSTTHHHHHHHHHHHHH
T ss_pred CCeEEEeCCcccHHHHHHHHHhCCCCCHHHHHhhccc------cCCCCCCCCCCCCCCcccCccchhhHHHHHHHHHHHH
Confidence 5776643 555 334556786 444556666653 5566788864 35788889999999999999999999
Q ss_pred hhcCC----------CceeEEEeCccccCcchHHHHHHHHHHcCCC-EEEEEEcCCcceeeecccccCCcCHHHHHhhcC
Q 016909 160 KMDRK----------DACAVTYFGDGGTSEGDFHAALNFSAVTEAP-VIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 228 (380)
Q Consensus 160 k~~~~----------~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lp-vi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~G 228 (380)
|+.+. +++|||++|||++++|++||+|++|++++|| +|+||+||+|++++++.... .+++.+++++||
T Consensus 172 ~~~~~~~n~~~~~~~d~~vv~i~GDG~l~eG~~~Eal~~A~~~~L~~livI~dnN~~~i~~~~~~~~-~~d~~~~~~a~G 250 (711)
T 3uk1_A 172 ALLAAEFNRDDAKIVDHHTYVFLGDGCLMEGISHEACSLAGTLKLNKLIALYDDNGISIDGDVVNWF-HDDTPKRFEAYG 250 (711)
T ss_dssp HHHHHHHCBTTBCCCCCCEEEEECHHHHHSHHHHHHHHHHHHTTCTTEEEEEEECSEETTEEGGGTC-CCCHHHHHHHTT
T ss_pred HhhcccccccccccCCCeEEEEECCcchhhccHHHHHHHHHHhCCCcEEEEEECCCcccccchhhhc-CCCHHHHHHHcC
Confidence 87653 7899999999999999999999999999996 99999999999999887764 578999999999
Q ss_pred eeEEE-EeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCCCCCCCCCCCCCC----ChhHHHHH
Q 016909 229 VRSIR-VDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDDSTKYR----PVDEIEWW 290 (380)
Q Consensus 229 ~~~~~-VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R~~gHs~~Dd~~~Yr----~~~e~~~~ 290 (380)
|++++ |||||++++.+++++|.+ .++|+||+++|+|.+||+..+++..|. +++|++..
T Consensus 251 ~~~~~~vdG~d~~~l~~Al~~A~~----~~~P~lI~v~T~kG~G~~~~e~~~~~Hg~~l~~e~~~~~ 313 (711)
T 3uk1_A 251 WNVIPNVNGHDVDAIDAAIAKAKR----SDKPSLICCKTRIGNGAATKAGGHDVHGAPLGADEIAKT 313 (711)
T ss_dssp CEEEEEEETTCHHHHHHHHHHHTT----CSSCEEEEEEC--------------------CHHHHHHH
T ss_pred CcEEEEeCCCCHHHHHHHHHHHHh----CCCCEEEEEccccccCCCCCCCcccccCCCCCHHHHHHH
Confidence 99999 999999999999887753 689999999999999998655544443 34555443
No 20
>3m49_A Transketolase; alpha-beta-alpha sandwich, csgid, transferase, structural genomics, center for structural genomics of infectious diseases; HET: MSE TDP PG5 TRS BTB; 2.00A {Bacillus anthracis} PDB: 3hyl_A*
Probab=99.96 E-value=6.2e-28 Score=255.53 Aligned_cols=195 Identities=24% Similarity=0.260 Sum_probs=156.5
Q ss_pred CCcEEEcc--ccch---HHHHHcCC-CHHHHHHHhhcCCCCCCCCCCCccccCC-CCCCcccccccccCccHHHHHHHHH
Q 016909 86 NDDFVVPQ--YREP---GVLLWRGF-SMQEFANQCFGNKADYGKGRQMPIHYGS-NKHNYFTVSSTIATQLPHAVGAAYA 158 (380)
Q Consensus 86 ~~D~v~~~--yR~~---~~~l~~G~-~~~~~l~e~~g~~~~~~~G~~~~~H~~~-~~~~~~~~~g~lG~~~p~AvG~A~A 158 (380)
+.|.++.+ |-+. +++...|+ ...+-|..++. .|+..++|+.. ..+++..++|++|+++|+|+|+|+|
T Consensus 82 ~rDrfvls~GH~~~~lYa~l~l~G~~~~~~~l~~~rq------~gs~~~Ghp~~~~~pgv~~~tG~lG~gl~~AvG~AlA 155 (690)
T 3m49_A 82 NRDRFVLSAGHGSMLLYSLLHLSGYDVTMDDLKNFRQ------WGSKTPGHPEYGHTAGVDATTGPLGQGIATAVGMAMA 155 (690)
T ss_dssp TSCEEEESSGGGHHHHHHHHHHTTSSCCHHHHTTTTC------TTCSSCSSCCTTTSTTCCSCCCSTTHHHHHHHHHHHH
T ss_pred CCCeEEECCccHHHHHHHHHHHHCCCCCHHHHHhhcc------CCCCCCCCCCCCCCCccccCCccccccHHHHHHHHHH
Confidence 46876643 5552 45556786 34444666654 36667789875 4678888999999999999999999
Q ss_pred hhhcCC----------CceeEEEeCccccCcchHHHHHHHHHHcCCC-EEEEEEcCCcceeeecccccCCcCHHHHHhhc
Q 016909 159 LKMDRK----------DACAVTYFGDGGTSEGDFHAALNFSAVTEAP-VIFICRNNGWAISTPISDQFRSDGAVVKGRAY 227 (380)
Q Consensus 159 ~k~~~~----------~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lp-vi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~ 227 (380)
.|+.+. +++|||++|||++++|++||++++|++++|| +|+|++||+|+|++++.... ..++.+++++|
T Consensus 156 ~~~~~~~~n~~~~~~~d~~v~~i~GDG~l~eG~~~Eal~~A~~~~L~~livI~dnN~~~i~~~~~~~~-~~d~~~~~~a~ 234 (690)
T 3m49_A 156 ERHLAAKYNRDAYNIVDHYTYAICGDGDLMEGVSAEASSLAAHLQLGRLVVLYDSNDISLDGDLNRSF-SESVEDRYKAY 234 (690)
T ss_dssp HHHHHHHHCBTTBCCSCCCEEEEECHHHHHSHHHHHHHHHHHHTTCTTEEEEEEECSBCSSSBGGGTC-CCCHHHHHHHH
T ss_pred HHHhhccccccccccCCCeEEEEECchhhhhccHHHHHHHHHHhCCCeEEEEEECCCeecccchhhcc-chhHHHHHHHc
Confidence 987543 7899999999999999999999999999995 99999999999999887554 57899999999
Q ss_pred CeeEEEE-eCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCCCCCCCCCCCCCC----ChhHHHHH
Q 016909 228 GVRSIRV-DGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDDSTKYR----PVDEIEWW 290 (380)
Q Consensus 228 G~~~~~V-dG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R~~gHs~~Dd~~~Yr----~~~e~~~~ 290 (380)
||++++| ||||++++.+++++|.+ ..++|+||+++|+|..|++..+++..|. ++++++..
T Consensus 235 G~~~~~v~DG~d~~~l~~Al~~a~~---~~~~P~lI~v~T~kG~G~~~~~~~~~~Hg~~~~~e~~~~~ 299 (690)
T 3m49_A 235 GWQVIRVEDGNDIEAIAKAIEEAKA---DEKRPTLIEVRTTIGFGSPNKSGKSASHGSPLGVEETKLT 299 (690)
T ss_dssp TCEEEEESCTTCHHHHHHHHHHHHH---CCSSCEEEEEECCTTTTCTTTTTSGGGTSSCCCHHHHHHH
T ss_pred CCcEEEEecCCCHHHHHHHHHHHHh---cCCCCEEEEEEeecccccCcccCcccccCCCCCHHHHHHH
Confidence 9999999 99999999998887764 2589999999999999998665544332 34555544
No 21
>3kom_A Transketolase; rossmann fold, csgid, transferase, structural genomics, center for structural genomics of infectious DISE; HET: MSE; 1.60A {Francisella tularensis subsp}
Probab=99.96 E-value=1.2e-27 Score=252.65 Aligned_cols=194 Identities=23% Similarity=0.225 Sum_probs=152.2
Q ss_pred CCcEEEc--cccc---hHHHHHcCC-CHHHHHHHhhcCCCCCCCCCCCccccCCC-CCCcccccccccCccHHHHHHHHH
Q 016909 86 NDDFVVP--QYRE---PGVLLWRGF-SMQEFANQCFGNKADYGKGRQMPIHYGSN-KHNYFTVSSTIATQLPHAVGAAYA 158 (380)
Q Consensus 86 ~~D~v~~--~yR~---~~~~l~~G~-~~~~~l~e~~g~~~~~~~G~~~~~H~~~~-~~~~~~~~g~lG~~~p~AvG~A~A 158 (380)
+.|.++. .|-+ .+++...|+ ...+-|..|+. .|+..++|+... .+++..++|++|+++|+|+|+|+|
T Consensus 58 ~rDrfvls~GH~s~~lYa~l~l~G~~~~~~~l~~~r~------~~s~~~ghp~~~~~~gve~~tG~lG~gl~~AvG~AlA 131 (663)
T 3kom_A 58 NRDRFVLSNGHGSMLLYSLLHLTGYDLSIEDIKNFRQ------LHSKTPGHPEYGYTPGVETTTGPLGQGVANAVGMALG 131 (663)
T ss_dssp TSCEEEECSSSCHHHHHHHHHHHTCSCCHHHHTTTTS------TTCSCCSSCCTTTSTTCCSCCCSTTHHHHHHHHHHHH
T ss_pred CCCeEEEeCCcccHHHHHHHHHhCCCCCHHHHHhhcc------CCCCCCCCCCCCCCCCcccCCcchhhHHHHHHHHHHh
Confidence 3577664 3666 344556776 44455666664 356667887643 578888999999999999999999
Q ss_pred hhhcCC----------CceeEEEeCccccCcchHHHHHHHHHHcCCC-EEEEEEcCCcceeeecccccCCcCHHHHHhhc
Q 016909 159 LKMDRK----------DACAVTYFGDGGTSEGDFHAALNFSAVTEAP-VIFICRNNGWAISTPISDQFRSDGAVVKGRAY 227 (380)
Q Consensus 159 ~k~~~~----------~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lp-vi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~ 227 (380)
.|+.+. +++|||++|||++++|++||+|++|++++|| +|+|++||+|++++++.... .+++.+++++|
T Consensus 132 ~~~~~~~~~~~~~~~~d~~v~~i~GDG~l~eG~~~Eal~~A~~~~L~~livi~dnN~~~i~~~~~~~~-~~d~~~~~~a~ 210 (663)
T 3kom_A 132 EKLLSDRYNTPDLKVIDHHTYVFLGDGCLMEGVSHEACSLAGTLGLNKLVAFWDDNNISIDGDTKGWF-SDNTPERFRAY 210 (663)
T ss_dssp HHHHHHHHCBTTBCSCCCCEEEEECHHHHHSHHHHHHHHHHHHHTCTTEEEEEEECC-----CGGGTC-CCCHHHHHHHT
T ss_pred HHhhcccccccccccCCCeEEEEECchhhhhchHHHHHHHHHHhCCCeEEEEEECCCcccccchhhhc-chhHHHHHHHC
Confidence 987653 7899999999999999999999999999996 99999999999999887654 57899999999
Q ss_pred CeeEE-EEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCCCCCCCCCCCCCC----ChhHHHH
Q 016909 228 GVRSI-RVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHTTSDDSTKYR----PVDEIEW 289 (380)
Q Consensus 228 G~~~~-~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R~~gHs~~Dd~~~Yr----~~~e~~~ 289 (380)
||+++ .|||||++++.+++++|.+. .++|+||+++|+|.+||+...++..+. +++|++.
T Consensus 211 G~~~~~~vdG~d~~~l~~al~~A~~~---~~~P~lI~~~T~kg~G~~~~e~~~~~Hg~~l~~e~~~~ 274 (663)
T 3kom_A 211 GWHVIENVDGHDFVAIEKAINEAHSQ---QQKPTLICCKTVIGFGSPEKAGTASVHGSPLSDQERAS 274 (663)
T ss_dssp TCEEEEEEETTCHHHHHHHHHHHHHC---SSSCEEEEEECCTTTTCTTTTTCSSTTSSCCCHHHHHH
T ss_pred CCeEEEEEcCCCHHHHHHHHHHHHhc---CCCCEEEEEecccccccCCCCCCccccCCCCCHHHHHH
Confidence 99999 89999999999999887642 589999999999999998765443332 4556554
No 22
>2qtc_A Pyruvate dehydrogenase E1 component; thiamin diphosphate, glycolysis, MAG metal-binding, oxidoreductase, thiamine pyrophosphate; HET: TDK; 1.77A {Escherichia coli} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 2qta_A* 1l8a_A* 1rp7_A* 2g25_A* 2g28_A* 2g67_A 2iea_A* 3lpl_A* 3lq2_A* 3lq4_A*
Probab=99.94 E-value=3.8e-26 Score=246.95 Aligned_cols=248 Identities=16% Similarity=0.168 Sum_probs=180.1
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHh-----cCCcccccccchhHHHHHHHHhcCC------CCcEEEcc-ccc---hH
Q 016909 34 SEGVAIKMYNDMVTLQTMDTIFYEAQR-----QGRISFYLTTSGEEAINIASAAAIK------NDDFVVPQ-YRE---PG 98 (380)
Q Consensus 34 ~~~~l~~~y~~M~~~R~~e~~~~~~~~-----~g~i~~~~~~~GqEa~~~~~~~~l~------~~D~v~~~-yR~---~~ 98 (380)
.+.++.+-+..-+|...++..... .+ .|.++...+.. |...+.....|+ +.|+|+.. |-+ .+
T Consensus 73 ~d~~l~~~la~~iR~~~i~~v~~a-~~~~~~~gGH~gs~ls~a--el~~~l~~~~~~~~~~~~~~D~V~~~GH~sp~~Ya 149 (886)
T 2qtc_A 73 GNLELERRIRSAIRWNAIMTVLRA-SKKDLELGGHMASFQSSA--TIYDVCFNHFFRARNEQDGGDLVYFQGHISPGVYA 149 (886)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHH-HHTCSCCCCCSHHHHHHH--HHHHHHHHHTCCCCCSSSCCCEEECCGGGHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHh-cCCCCCCccCcCCcHHHH--HHHHHHHHHhcCCCCCCCCCCEEEEcchhHHHHHH
Confidence 344555344444444444433321 22 35444332222 444444445566 46877764 666 45
Q ss_pred HHHHcCCCHHHHHHHhhcCCCCCCCCCCCccccCCC-CCC-cccccccccCccHHHHHHHHHhhh-------cCCCceeE
Q 016909 99 VLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSN-KHN-YFTVSSTIATQLPHAVGAAYALKM-------DRKDACAV 169 (380)
Q Consensus 99 ~~l~~G~~~~~~l~e~~g~~~~~~~G~~~~~H~~~~-~~~-~~~~~g~lG~~~p~AvG~A~A~k~-------~~~~~~vv 169 (380)
+++..|...++-|..|+... .+.++++|+... .++ ....+|++|.+++.|+|+|+|.|+ ++.+++|+
T Consensus 150 ~~~l~Gr~~~e~l~~fRq~~----~~~gl~~~p~~~~~p~~~~~~tG~~G~g~s~AiG~A~a~~~l~~~~~~~~~~~~v~ 225 (886)
T 2qtc_A 150 RAFLEGRLTQEQLDNFRQEV----HGNGLSSYPHPKLMPEFWQFPTVSMGLGPIGAIYQAKFLKYLEHRGLKDTSKQTVY 225 (886)
T ss_dssp HHHHTTSSCHHHHTTBTCCT----TSSCBCSSCCTTTSTTTCCCCCCSTTHHHHHHHHHHHHHHHHHHTTSCCCTTCCEE
T ss_pred HHHHhCCCCHHHHHhccCCC----CCCCCCCCCCcccCCCcccccccccCccHHHHHHHHHHhhhhcccccccCCCCEEE
Confidence 67788976666677776531 145677777643 344 777899999999999999999998 77899999
Q ss_pred EEeCccccCcchHHHHHHHHHHcCC-CEEEEEEcCCcceeeecccc-cCCcCHHHHHhhcCeeEEEE-------------
Q 016909 170 TYFGDGGTSEGDFHAALNFSAVTEA-PVIFICRNNGWAISTPISDQ-FRSDGAVVKGRAYGVRSIRV------------- 234 (380)
Q Consensus 170 ~~~GDG~~~eG~~~Eal~~A~~~~L-pvi~vv~NN~~~i~~~~~~~-~~~~~~~~~a~a~G~~~~~V------------- 234 (380)
|++|||++++|++|||||+|+.++| |+||||+||++++++++... ....++.++++++||++++|
T Consensus 226 aviGDG~l~eG~~~EAl~~A~~~~L~nli~Vvn~N~~si~~~v~~~~~~~~~l~~~~~~~G~~~~~v~~g~~~~~ll~~~ 305 (886)
T 2qtc_A 226 AFLGDGEMDEPESKGAITIATREKLDNLVFVINCNLQRLDGPVTGNGKIINELEGIFEGAGWNVIKVMWGSRWDELLRKD 305 (886)
T ss_dssp EEEETGGGGSHHHHTTHHHHHHTTCTTEEEEEEECSBCSSSBSCTTSCHHHHHHHHHHHTTCEEEEECBCTTHHHHHHHC
T ss_pred EEECCccccccchHHHHHHHHHcCCCcEEEEEECCCcccCCCccccccccHHHHHHHHhCCCCEEEEecchhHHHHHccC
Confidence 9999999999999999999999999 69999999999999987753 23467899999999999998
Q ss_pred --------------------------------------------------------eCCCHHHHHHHHHHHHHHhhccCC
Q 016909 235 --------------------------------------------------------DGNDALAIYSAVHAAREMAIGEGR 258 (380)
Q Consensus 235 --------------------------------------------------------dG~D~~av~~a~~~A~~~ar~~~g 258 (380)
||||+.+|++|+++|.++ .++
T Consensus 306 ~~~~l~~~~~~~~d~~~q~~~~~~g~~~r~~~F~~~~~~~~l~~~~~d~~i~~l~~dGhD~~~l~~a~~~A~~~---~~~ 382 (886)
T 2qtc_A 306 TSGKLIQLMNETVDGDYQTFKSKDGAYVREHFFGKYPETAALVADWTDEQIWALNRGGHDPKKIYAAFKKAQET---KGK 382 (886)
T ss_dssp SSCHHHHHHHHCCHHHHHHHTTSCHHHHHHHTSTTSHHHHTTTTTCCHHHHHTCCBGGGCHHHHHHHHHHHHHC---CSS
T ss_pred CchHHHHHHHhccchhhhhhhhccchHHHHhhcccchHHHHHHhhcChhhHhhcccCCCCHHHHHHHHHHHHHc---CCC
Confidence 699999999999999874 469
Q ss_pred cEEEEEEeecCCCCCC--CCCCC----CCCChhHHHHHH
Q 016909 259 PILIEALTYRVGHHTT--SDDST----KYRPVDEIEWWR 291 (380)
Q Consensus 259 P~lIe~~t~R~~gHs~--~Dd~~----~Yr~~~e~~~~~ 291 (380)
|++|+++|++.+||+. .++.. .|++.++++.|+
T Consensus 383 PtlI~~~T~KG~G~~~~~e~~~~~H~~~~l~~~~~~~~r 421 (886)
T 2qtc_A 383 ATVILAHTIKGYGMGDAAKGKNIAHQVKKMNMDGVRHIR 421 (886)
T ss_dssp CEEEEEECCTTTTCTTCC-------------CHHHHHHH
T ss_pred CEEEEEeeeeccccchhhcCCccccCCCCCCHHHHHHHH
Confidence 9999999999999973 22222 278888888886
No 23
>4feg_A Pyruvate oxidase; carbanion, structure activity relationship, oxidation-reduct umpolung, thiamine diphosphate, reaction intermediate; HET: TDM FAD GOL; 1.09A {Lactobacillus plantarum} PDB: 4fee_A* 1y9d_A* 2ez9_A* 2ez4_A* 2ez8_A* 2ezt_A* 2ezu_A* 1pow_A* 1pox_A*
Probab=99.90 E-value=4.8e-24 Score=223.82 Aligned_cols=164 Identities=17% Similarity=0.212 Sum_probs=129.2
Q ss_pred ccccccCccHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCC-cceee----------
Q 016909 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAIST---------- 209 (380)
Q Consensus 141 ~~g~lG~~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~-~~i~~---------- 209 (380)
..|++|.++|.|+|+++|. ++++|||++|||+++++ +++|++|+++++|+++||.||+ |++..
T Consensus 418 ~~g~~G~~l~~A~Gaala~----~~~~vv~~~GDG~~~~~--~~~l~~a~~~~lp~~~vv~nN~~~~~~~~~~~~~~~~~ 491 (603)
T 4feg_A 418 LFATMGVGIPGAIAAKLNY----PERQVFNLAGDGGASMT--MQDLATQVQYHLPVINVVFTNCQYGFIKDEQEDTNQND 491 (603)
T ss_dssp SSCCTTCHHHHHHHHHHHC----TTSCEEEEEEHHHHHHH--GGGHHHHHHTTCCCEEEEEECSBCHHHHHHHHHHCSSC
T ss_pred ccccccchhHHHhhHHHhC----CCCcEEEEeccHHHhhh--HHHHHHHHHHCcCeEEEEEECCchHHHHHHHHHhcCCC
Confidence 3589999999999999985 47899999999999876 6779999999999887776664 88622
Q ss_pred ecccccCCcCHHHHHhhcCeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEe---ecCCCCCCCCCCCCCCChh-
Q 016909 210 PISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALT---YRVGHHTTSDDSTKYRPVD- 285 (380)
Q Consensus 210 ~~~~~~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t---~R~~gHs~~Dd~~~Yr~~~- 285 (380)
.........++.+++++||+++++|+ +++++.+++++|++ .+.+||+|||+.| +|+.+|.+.|++..||..+
T Consensus 492 ~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~~l~~al~~a~~--~~~~gP~lIev~~~~~~~~~~~~~~~~~~~~~~~~~ 567 (603)
T 4feg_A 492 FIGVEFNDIDFSKIADGVHMQAFRVN--KIEQLPDVFEQAKA--IAQHEPVLIDAVITGDRPLPAEKLRLDSAMSSAADI 567 (603)
T ss_dssp CCSSBCCCCCHHHHHHHTTCEEEEEC--BGGGHHHHHHHHHH--HTTTSCEEEEEECCCCCCCCTTSCCCCTTTSCHHHH
T ss_pred cccCcCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHH--hcCCCcEEEEEEeCCCCCCCcccchhhhhhhhHHHH
Confidence 11122345689999999999999998 67788888877762 1468999999999 6667899999999998665
Q ss_pred -HHHHHHhCCChHHHHHHHHHHCCCCCHHHH
Q 016909 286 -EIEWWRTTQDPVTRFRKWIESNGWWNGDIE 315 (380)
Q Consensus 286 -e~~~~~~~~DPi~~~~~~L~~~g~~t~~~~ 315 (380)
+..+|+ ++||+.+++++|.++|+|++++.
T Consensus 568 ~~~~~~~-~~d~~~~~~~~l~~~g~~~~~~~ 597 (603)
T 4feg_A 568 EAFKQRY-EAQDLQPLSTYLKQFGLDDLQHQ 597 (603)
T ss_dssp HHHHHHH-TCTTCCCHHHHHHHTTC------
T ss_pred HHHHhhC-CcccCCchHHHHHHcCCchhhhh
Confidence 566666 59999999999999999998754
No 24
>3ahc_A Phosphoketolase, xylulose 5-phosphate/fructose 6-phosphate phospho; thiamine diphosphate-dependent enzyme, alpha-beta fold; HET: TPP 2PE; 1.70A {Bifidobacterium breve} PDB: 3ahd_A* 3ahe_A* 3ahf_A* 3ahj_A* 3ahi_A* 3ahh_A* 3ahg_A* 3ai7_A*
Probab=99.79 E-value=7.1e-19 Score=187.73 Aligned_cols=140 Identities=20% Similarity=0.211 Sum_probs=124.7
Q ss_pred CccccCCCCCCcccccccccCccHHHHHHHHHhhhcCCCceeEEEeCccccCcch---HHHHHHHHHHcCC-CEEEEEEc
Q 016909 127 MPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGD---FHAALNFSAVTEA-PVIFICRN 202 (380)
Q Consensus 127 ~~~H~~~~~~~~~~~~g~lG~~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~---~~Eal~~A~~~~L-pvi~vv~N 202 (380)
+++|+....+|+...+|+||+|+++|+|+|+ .+++..|+|++|||+.++|. .||+.+++..++| +||.|+++
T Consensus 159 ~pgHp~~~tpGve~~tG~LGqGls~AvG~A~----~~~~~~v~~~~GDGe~e~GsLAg~wea~~~~~~~~l~nl~~i~D~ 234 (845)
T 3ahc_A 159 IPSHFAPETPGSIHEGGELGYALSHAYGAVM----NNPSLFVPCIIGDGEAETGPLATGWQSNKLVNPRTDGIVLPILHL 234 (845)
T ss_dssp BCSSCCTTSTTCSCCCSSTTCHHHHHHHHHT----TCTTCEEEEEEETTGGGSHHHHHHGGGGGSCCTTTSCEEEEEEEE
T ss_pred CCCCCCCCCCCeecCCCCccchHhHHhhhhh----cCCCCeEEEEECCCchhhhcchhhhHHhhhhhhhcCCCEEEEEEC
Confidence 8999976678999999999999999999995 46788999999999999999 9999999999999 89999999
Q ss_pred CCcceeeecccc-cCCcCHHHHHhhcCeeEE-EEeC-C--CHHHHHHHHHHHHH-----------Hhhc--cCCc--EEE
Q 016909 203 NGWAISTPISDQ-FRSDGAVVKGRAYGVRSI-RVDG-N--DALAIYSAVHAARE-----------MAIG--EGRP--ILI 262 (380)
Q Consensus 203 N~~~i~~~~~~~-~~~~~~~~~a~a~G~~~~-~VdG-~--D~~av~~a~~~A~~-----------~ar~--~~gP--~lI 262 (380)
|+++|+.++... .+.+++.+++++|||.++ .||| | |+.++..++.+|++ .+|+ .++| ++|
T Consensus 235 N~~~i~g~t~l~~~~~e~l~~rf~a~Gw~v~~~vdG~~~~D~~~i~~a~~~al~~~~~~i~~i~~~A~~~~~~kP~w~~I 314 (845)
T 3ahc_A 235 NGYKIANPTILARISDEELHDFFRGMGYHPYEFVAGFDNEDHMSIHRRFAELFETIFDEICDIKAAAQTDDMTRPFYPML 314 (845)
T ss_dssp CSBSSSSBCHHHHSCHHHHHHHHHHTTEEEEEEECSSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCCCEEEE
T ss_pred CCCcCCCCccccccCcHHHHHHHHHCCCEEeEEeCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCeEE
Confidence 999999998743 456789999999999999 9999 9 99999998876663 2444 3689 999
Q ss_pred EEEeecCC
Q 016909 263 EALTYRVG 270 (380)
Q Consensus 263 e~~t~R~~ 270 (380)
.++|...+
T Consensus 315 i~rT~kG~ 322 (845)
T 3ahc_A 315 IFRTPKGW 322 (845)
T ss_dssp EEECCTTT
T ss_pred EEECcccC
Confidence 99999998
No 25
>1v5e_A Pyruvate oxidase; oxidoreductase, flavoprotein; HET: FAD; 1.60A {Aerococcus viridans} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2dji_A* 1v5f_A* 1v5g_A*
Probab=99.68 E-value=9.4e-17 Score=167.97 Aligned_cols=121 Identities=17% Similarity=0.208 Sum_probs=101.0
Q ss_pred ccccccCccHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEE-EcCCcceeeecccc-----
Q 016909 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFIC-RNNGWAISTPISDQ----- 214 (380)
Q Consensus 141 ~~g~lG~~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv-~NN~~~i~~~~~~~----- 214 (380)
..|+||+++|.|+|+|+|. ++++|||++|||+++++ +++|++|+++++|+++|| +||+|++.......
T Consensus 411 ~~g~mG~~l~~AiGaala~----~~~~vv~i~GDG~~~~~--~~~L~ta~~~~l~~~ivv~NN~~~~~~~~~q~~~~~~~ 484 (590)
T 1v5e_A 411 LFATMGIAIPGGLGAKNTY----PDRQVWNIIGDGAFSMT--YPDVVTNVRYNMPVINVVFSNTEYAFIKNKYEDTNKNL 484 (590)
T ss_dssp SSCCTTCHHHHHHHHHHHC----TTSCEEEEEEHHHHHHH--GGGHHHHHHTTCCCEEEEEECSSCTTGGGTTSSSCCSC
T ss_pred CCCcccChHHHHHHHHHhC----CCCeEEEEEechHHhch--HHHHHHHHHhCCCCEEEEEECCchHHHHHHHHHhcCCC
Confidence 4699999999999999995 47889999999999876 588999999999966666 55578887543211
Q ss_pred ----cCCcCHHHHHhhcCeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCC
Q 016909 215 ----FRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVG 270 (380)
Q Consensus 215 ----~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R~~ 270 (380)
....++.+++++||+++++|+ +++++.+++++|++.+|. ++|+|||+.|+|..
T Consensus 485 ~~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~~~~~~-~gp~liev~~~~~~ 541 (590)
T 1v5e_A 485 FGVDFTDVDYAKIAEAQGAKGFTVS--RIEDMDRVMAEAVAANKA-GHTVVIDCKITQDR 541 (590)
T ss_dssp CCCCCCCCCHHHHHHHTTSEEEEEC--BHHHHHHHHHHHHHHHHT-TCCEEEEEECCSCC
T ss_pred ccccCCCCCHHHHHHHcCCEEEEEC--CHHHHHHHHHHHHHhcCC-CCCEEEEEEecccc
Confidence 234689999999999999998 799999999999876554 79999999998754
No 26
>2pan_A Glyoxylate carboligase; thiamin-diphosphate (THDP), thimain-dependent enzymes, FAD, lyase; HET: FAD TDP 1PE; 2.70A {Escherichia coli}
Probab=99.66 E-value=9.5e-17 Score=168.69 Aligned_cols=122 Identities=20% Similarity=0.187 Sum_probs=100.3
Q ss_pred ccccccCccHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcC-Ccceeeecc-------
Q 016909 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN-GWAISTPIS------- 212 (380)
Q Consensus 141 ~~g~lG~~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN-~~~i~~~~~------- 212 (380)
.+|++|+++|.|+|+|+|. +++.|||++|||+++++ +++|++|+++++|+++||.|| +|++.....
T Consensus 440 ~~G~~G~~l~~AiGaala~----~~~~vv~i~GDGs~~~~--~~~L~ta~~~~l~~~ivv~NN~~~~~~~~~~~~~~~~~ 513 (616)
T 2pan_A 440 QAGPLGWTIPAALGVCAAD----PKRNVVAISGDFDFQFL--IEELAVGAQFNIPYIHVLVNNAYLGLIRQSQRAFDMDY 513 (616)
T ss_dssp TTCCTTCHHHHHHHHHHHC----TTCEEEEEEEHHHHHHT--GGGHHHHHHTTCCCEEEEEECSBCHHHHHHGGGGTCCC
T ss_pred CcccccchHHHHHHHHHhC----CCCcEEEEEcchhhhCC--HHHHHHHHHhCCCeEEEEEECCcchHHHHHHHHhcCCc
Confidence 4689999999999999995 47899999999999875 578999999999976655555 588753211
Q ss_pred -------c--ccC----CcCHHHHHhhcCeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCC
Q 016909 213 -------D--QFR----SDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVG 270 (380)
Q Consensus 213 -------~--~~~----~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R~~ 270 (380)
. ... ..++.+++++||+++++|+ +++++.+++++|++++|+.++|+|||+.|.|..
T Consensus 514 ~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~~~~~~~~gp~lIev~~~~~~ 582 (616)
T 2pan_A 514 CVQLAFENINSSEVNGYGVDHVKVAEGLGCKAIRVF--KPEDIAPAFEQAKALMAQYRVPVVVEVILERVT 582 (616)
T ss_dssp SCBCCCCCTTCGGGTTCCCCHHHHHHHTTCEEEEEC--SGGGHHHHHHHHHHHHHHHCSCEEEEEEBCSCC
T ss_pred cccccccccccccCCCCCCCHHHHHHHcCCeEEEEC--CHHHHHHHHHHHHhhcccCCCcEEEEEEecccc
Confidence 0 111 2689999999999999998 788999999999987776789999999998865
No 27
>2uz1_A Benzaldehyde lyase; thiamine diphosphate, thiamine pyrophosphate, benzoin, flavoprotein; HET: TPP; 1.65A {Pseudomonas fluorescens} PDB: 2ag1_A* 2ag0_A* 2uz1_B* 3iae_A* 3iaf_A* 3d7k_A*
Probab=99.65 E-value=2.2e-16 Score=164.22 Aligned_cols=117 Identities=18% Similarity=0.239 Sum_probs=97.1
Q ss_pred cccccCccHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEE-EcCCcceeeecc-------c
Q 016909 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFIC-RNNGWAISTPIS-------D 213 (380)
Q Consensus 142 ~g~lG~~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv-~NN~~~i~~~~~-------~ 213 (380)
.|++|+++|.|+|+|+|.| +++++|||++|||+++++ +++|++|+++++|+++|| +||+|++..... .
T Consensus 418 ~g~~G~~l~~AiGaa~a~~--~~~~~vv~i~GDG~~~~~--~~~L~ta~~~~l~~~ivv~nN~~~~~~~~~~~~~~~~~~ 493 (563)
T 2uz1_A 418 LGSMGVGFGTALGAQVADL--EAGRRTILVTGDGSVGYS--IGEFDTLVRKQLPLIVIIMNNQSWGATLHFQQLAVGPNR 493 (563)
T ss_dssp TCCTTTHHHHHHHHHHHHH--HHTCEEEEEEEHHHHGGG--TTHHHHHHHHTCCCEEEEEECSBCHHHHHHHHHHTCTTC
T ss_pred CccccChHHHHHHHHHHhh--CCCCeEEEEEccHHHhCC--HHHHHHHHHhCCCeEEEEEeCCcchHHHHHHHHhcCCCc
Confidence 5899999999999999986 567899999999999876 468999999999966655 555788765421 1
Q ss_pred c----cCCcCHHHHHhhcCeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeec
Q 016909 214 Q----FRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 268 (380)
Q Consensus 214 ~----~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R 268 (380)
. ....++.+++++||+++++|+ +++++.+++++|++ .++|+|||+.|++
T Consensus 494 ~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~~l~~al~~a~~----~~gp~liev~~~~ 546 (563)
T 2uz1_A 494 VTGTRLENGSYHGVAAAFGADGYHVD--SVESFSAALAQALA----HNRPACINVAVAL 546 (563)
T ss_dssp CCSCBCCCCCHHHHHHHTTCEEEEEC--SHHHHHHHHHHHHH----SSSCEEEEEECCS
T ss_pred ccCCcCCCCCHHHHHHHcCCeEEEeC--CHHHHHHHHHHHHH----CCCCEEEEEEecc
Confidence 1 134689999999999999997 89999999988875 5899999999964
No 28
>2vk8_A Pyruvate decarboxylase isozyme 1; asymmetric active sites, phenylalanine catabolism, tryptophan catabolism, thiamine pyrophosphate; HET: TPP; 1.42A {Saccharomyces cerevisiae} PDB: 1qpb_A* 2vk1_A* 2w93_A* 1pyd_A* 1pvd_A* 2vk4_A* 2vjy_A* 2g1i_A*
Probab=99.64 E-value=6.8e-17 Score=168.00 Aligned_cols=121 Identities=14% Similarity=0.163 Sum_probs=98.0
Q ss_pred ccccccCccHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEE-EcCCcceeeecc------c
Q 016909 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFIC-RNNGWAISTPIS------D 213 (380)
Q Consensus 141 ~~g~lG~~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv-~NN~~~i~~~~~------~ 213 (380)
..|+||+++|.|+|+|+|.+.++.+++|||++|||+++++ +++|++|++++||+++|| +||+|++..... .
T Consensus 411 ~~g~mG~~l~~A~Gaala~~~~~~~~~vv~~~GDG~~~~~--~~el~ta~~~~l~~~ivv~nN~~~~~~~~~~~~~~~~~ 488 (563)
T 2vk8_A 411 LWGSIGFTTGATLGAAFAAEEIDPKKRVILFIGDGSLQLT--VQEISTMIRWGLKPYLFVLNNDGYTIQKLIHGPKAQYN 488 (563)
T ss_dssp TTCCTTHHHHHHHHHHHHHHHHCTTCCEEEEEEHHHHHHH--GGGHHHHHHTTCCCEEEEEESSSCHHHHHHSCTTCGGG
T ss_pred chhhhhhHHHHHHHHHHhCcccCCCCCEEEEEcchHhhcc--HHHHHHHHHcCCCcEEEEEECCcchhhhhhhCCCCCcc
Confidence 4689999999999999999888888999999999999864 678999999999966666 555688754321 1
Q ss_pred ccCCcCHHHHHhhcCee---EEEEeCCCHHHHHHHHH-HHHHHhhccCCcEEEEEEeec
Q 016909 214 QFRSDGAVVKGRAYGVR---SIRVDGNDALAIYSAVH-AAREMAIGEGRPILIEALTYR 268 (380)
Q Consensus 214 ~~~~~~~~~~a~a~G~~---~~~VdG~D~~av~~a~~-~A~~~ar~~~gP~lIe~~t~R 268 (380)
.....++.+++++||++ +++|+ +++++.++++ ++++ ..++|+|||++|++
T Consensus 489 ~~~~~d~~~~a~a~G~~~~~~~~v~--~~~el~~al~~~a~~---~~~~p~liev~~~~ 542 (563)
T 2vk8_A 489 EIQGWDHLSLLPTFGAKDYETHRVA--TTGEWDKLTQDKSFN---DNSKIRMIEVMLPV 542 (563)
T ss_dssp CCCCCCGGGHHHHTTCSSEEEEEEC--BHHHHHHHHTCTTTT---SCSSEEEEEEECCT
T ss_pred cCCCCCHHHHHHHhCCCCCcEEEec--CHHHHHHHHHHHHHh---CCCCcEEEEEEeCc
Confidence 12346899999999999 99999 7888888887 6553 23579999999965
No 29
>1q6z_A BFD, BFDC, benzoylformate decarboxylase; lyase, carbon-carbon, mandelate catabolism, T thiazolone diphosphate, inhibitor, high resolution; HET: TZD; 1.00A {Pseudomonas putida} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1po7_A* 1pi3_A* 3fsj_X* 1mcz_A* 1bfd_A* 2fwn_A* 3fzn_A* 2fn3_A* 2v3w_A* 1yno_A* 3f6b_X* 3f6e_X*
Probab=99.63 E-value=2.6e-16 Score=162.39 Aligned_cols=114 Identities=23% Similarity=0.337 Sum_probs=94.3
Q ss_pred ccccCccHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcC-Ccceeeeccc--------
Q 016909 143 STIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN-GWAISTPISD-------- 213 (380)
Q Consensus 143 g~lG~~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN-~~~i~~~~~~-------- 213 (380)
|+||+++|.|+|+|+|. +++.|||++|||+++++ +++|++|+++++|+++||.|| +|++.+....
T Consensus 401 g~~G~~l~~A~G~a~a~----~~~~vv~~~GDG~~~~~--~~~l~~a~~~~l~~~ivv~nN~~~~~~~~~~~~~~~~~~~ 474 (528)
T 1q6z_A 401 GGLGFALPAAIGVQLAE----PERQVIAVIGDGSANYS--ISALWTAAQYNIPTIFVIMNNGTYGALRWFAGVLEAENVP 474 (528)
T ss_dssp CCTTSHHHHHHHHHHHC----TTSCEEEEEEHHHHTTT--GGGHHHHHHHTCCCEEEEEECSBCHHHHHHHHHHTCCSCC
T ss_pred ccccchHHHHHHHHHhC----CCCcEEEEECCcHHHhh--HHHHHHHHHhCCCeEEEEEeCCcchHhHHHHHHhcCCCcc
Confidence 99999999999999995 46789999999999987 789999999999977777655 5888654211
Q ss_pred --ccCCcCHHHHHhhcCeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeec
Q 016909 214 --QFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 268 (380)
Q Consensus 214 --~~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R 268 (380)
.....++.+++++||+++++|+ +.+++.++++++++ .++|+|||+.|.|
T Consensus 475 ~~~~~~~d~~~~a~a~G~~~~~v~--~~~~l~~al~~a~~----~~gp~liev~~~~ 525 (528)
T 1q6z_A 475 GLDVPGIDFRALAKGYGVQALKAD--NLEQLKGSLQEALS----AKGPVLIEVSTVS 525 (528)
T ss_dssp SCBCCCCCHHHHHHHHTCEEEEES--SHHHHHHHHHHHHT----CSSCEEEEEEBCC
T ss_pred cCCCCCCCHHHHHHHcCCeEEEeC--CHHHHHHHHHHHHH----CCCcEEEEEEecC
Confidence 1134689999999999999998 67788777776654 6899999999965
No 30
>1ozh_A ALS, acetolactate synthase, catabolic; acetohydroxyacid synthase, thiamin diphosphate, lyase; HET: PGE HE3; 2.00A {Klebsiella pneumoniae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1ozg_A* 1ozf_A*
Probab=99.63 E-value=2.5e-16 Score=163.99 Aligned_cols=116 Identities=20% Similarity=0.268 Sum_probs=95.8
Q ss_pred ccccccCccHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcC-Ccceeeecc-------
Q 016909 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN-GWAISTPIS------- 212 (380)
Q Consensus 141 ~~g~lG~~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN-~~~i~~~~~------- 212 (380)
..|+||+++|.|+|+|+|. ++++|||++|||+++++ +++|++|.++++|+++||.|| +|++.....
T Consensus 418 g~g~mG~~l~~AiGaala~----~~~~vv~i~GDG~~~~~--~~~L~ta~~~~l~~~ivv~nN~~~~~~~~~~~~~~~~~ 491 (566)
T 1ozh_A 418 GQQTMGVALPWAIGAWLVN----PERKVVSVSGDGGFLQS--SMELETAVRLKANVLHLIWVDNGYNMVAIQEEKKYQRL 491 (566)
T ss_dssp TTCCTTCHHHHHHHHHHHS----TTSEEEEEEEHHHHHHH--TTHHHHHHHHTCCEEEEEEECSBCHHHHHHHHHHHSSC
T ss_pred CcccccchHHHHHHHHHhC----CCCCEEEEEcChHHhcc--HHHHHHHHHhCCCcEEEEEECCchhHHHHHHHHhcCCC
Confidence 3689999999999999995 47899999999999874 577999999999977666555 688765321
Q ss_pred --cccCCcCHHHHHhhcCeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeec
Q 016909 213 --DQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 268 (380)
Q Consensus 213 --~~~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R 268 (380)
......++.+++++||+++++|+ +++++.+++++|++ .++|+|||+.|+|
T Consensus 492 ~~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~~----~~gp~liev~~~~ 543 (566)
T 1ozh_A 492 SGVEFGPMDFKAYAESFGAKGFAVE--SAEALEPTLRAAMD----VDGPAVVAIPVDY 543 (566)
T ss_dssp CSCBCCCCCHHHHHHTTTSEEEECC--SGGGHHHHHHHHHH----SSSCEEEEEEBCC
T ss_pred ccCcCCCCCHHHHHHHcCCeEEEeC--CHHHHHHHHHHHHh----CCCCEEEEEEeCC
Confidence 12334689999999999999998 78888888888875 5899999999976
No 31
>2iht_A Carboxyethylarginine synthase; thiamin diphosphate complex, transferase; HET: MSE TPP; 2.00A {Streptomyces clavuligerus} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1upb_A* 1upc_A* 1upa_A* 2ihu_A* 2ihv_A*
Probab=99.62 E-value=3.9e-16 Score=162.71 Aligned_cols=116 Identities=25% Similarity=0.319 Sum_probs=95.8
Q ss_pred ccccccCccHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEE-EcCCcceeeec--------
Q 016909 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFIC-RNNGWAISTPI-------- 211 (380)
Q Consensus 141 ~~g~lG~~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv-~NN~~~i~~~~-------- 211 (380)
..|++|+++|.|+|+|+|. ++++|||++|||+++++ +++|++|+++++|+++|| +||+|++....
T Consensus 434 g~g~mG~~l~~AiGaa~a~----~~~~vv~i~GDG~~~~~--~~~L~~a~~~~l~~~ivv~NN~~~~~~~~~~~~~~~~~ 507 (573)
T 2iht_A 434 GCSSFGYGIPAAIGAQMAR----PDQPTFLIAGDGGFHSN--SSDLETIARLNLPIVTVVVNNDTNGLIELYQNIGHHRS 507 (573)
T ss_dssp SSCCTTCHHHHHHHHHHHS----TTSCEEEEEEHHHHHHT--GGGHHHHHHHTCCCEEEEEECSBCHHHHHHHHHHHSSC
T ss_pred CCcccccHHHHHHHHHHhC----CCCcEEEEEccHHHHhH--HHHHHHHHHhCCCeEEEEEECCcchhhHHHHHHhcCCC
Confidence 3689999999999999995 47889999999999875 578999999999966555 55568876642
Q ss_pred -c--cccCCcCHHHHHhhcCeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeec
Q 016909 212 -S--DQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 268 (380)
Q Consensus 212 -~--~~~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R 268 (380)
. ......++.+++++||+++++|+ +.+++.+++++|++ .++|+|||+.|.|
T Consensus 508 ~~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~~l~~al~~a~~----~~gp~liev~~~~ 561 (573)
T 2iht_A 508 HDPAVKFGGVDFVALAEANGVDATRAT--NREELLAALRKGAE----LGRPFLIEVPVNY 561 (573)
T ss_dssp CGGGTBCCCCCHHHHHHHTTCEEEECC--SHHHHHHHHHHHHT----SSSCEEEEEEBCC
T ss_pred cCccccCCCCCHHHHHHHcCCeEEEeC--CHHHHHHHHHHHHh----CCCCEEEEEECCC
Confidence 1 22334689999999999999997 88898888887764 5899999999988
No 32
>1t9b_A Acetolactate synthase, mitochondrial; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: 1CS P25 FAD NSP P22 YF3; 2.20A {Saccharomyces cerevisiae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1n0h_A* 1t9a_A* 1t9c_A* 1t9d_A* 1jsc_A*
Probab=99.61 E-value=6.4e-16 Score=164.05 Aligned_cols=118 Identities=18% Similarity=0.209 Sum_probs=96.2
Q ss_pred ccccccCccHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEE-EcCCcceeeecc-------
Q 016909 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFIC-RNNGWAISTPIS------- 212 (380)
Q Consensus 141 ~~g~lG~~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv-~NN~~~i~~~~~------- 212 (380)
..|++|+++|.|+|+|+|. +++.|||++|||+|+++ +++|++|+++++|+++|| +||+|++.....
T Consensus 511 ~~G~mG~~lpaAiGaalA~----p~~~Vv~i~GDGsf~~~--~~eL~ta~~~~l~v~ivV~NN~~~g~~~~~~~~~~~~~ 584 (677)
T 1t9b_A 511 GLGTMGYGLPAAIGAQVAK----PESLVIDIDGDASFNMT--LTELSSAVQAGTPVKILILNNEEQGMVTQWQSLFYEHR 584 (677)
T ss_dssp SSCCTTCHHHHHHHHHHHC----TTSEEEEEEEHHHHHHH--GGGHHHHHHHTCCCEEEEEECSSCHHHHHHHHHHSTTC
T ss_pred CcchhhchHHHHHHHHHhC----CCCeEEEEEeehHHhcc--HHHHHHHHHhCCCeEEEEEeCCCchhhhhhhhhhcCCC
Confidence 3589999999999999995 67899999999999864 566999999999865555 555688754321
Q ss_pred ---cccCCcCHHHHHhhcCeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCC
Q 016909 213 ---DQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVG 270 (380)
Q Consensus 213 ---~~~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R~~ 270 (380)
......++.+++++||+++++|+ +++++.+++++|++ .++|+|||+.|.|..
T Consensus 585 ~~~~~~~~~d~~~la~a~G~~~~~v~--~~~el~~al~~a~~----~~gp~lIev~~~~~~ 639 (677)
T 1t9b_A 585 YSHTHQLNPDFIKLAEAMGLKGLRVK--KQEELDAKLKEFVS----TKGPVLLEVEVDKKV 639 (677)
T ss_dssp CCSCCCCCCCHHHHHHHTTCEEEEEC--SHHHHHHHHHHHHH----CSSCEEEEEEBCSSC
T ss_pred cccCcCCCCCHHHHHHHcCCeEEEEC--CHHHHHHHHHHHHH----CCCcEEEEEEecCCc
Confidence 11235689999999999999997 89999999988875 579999999999864
No 33
>2pgn_A Cyclohexane-1,2-dione hydrolase (CDH); three alpha/beta domains; HET: P6G FAD TPP; 1.20A {Azoarcus SP} PDB: 2pgo_A*
Probab=99.61 E-value=3.5e-16 Score=163.57 Aligned_cols=118 Identities=21% Similarity=0.275 Sum_probs=97.0
Q ss_pred cccccCccHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcC-Ccceeeecc--------
Q 016909 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN-GWAISTPIS-------- 212 (380)
Q Consensus 142 ~g~lG~~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN-~~~i~~~~~-------- 212 (380)
.|++|+++|.|+|+|+|. +++.|||++|||+++++ +++|++|+++++|+++||.|| +|++.....
T Consensus 423 ~g~mG~~l~~AiGaala~----~~~~vv~i~GDG~~~~~--~~~L~ta~~~~l~~~ivv~nN~~~~~~~~~~~~~~~~~~ 496 (589)
T 2pgn_A 423 EGILGCGFPMALGAQLAE----PNSRVFLGTGDGALYYH--FNEFRVAVEHKLPVITMVFTNESYGANWTLMNHQFGQNN 496 (589)
T ss_dssp TCCTTCHHHHHHHHHHHC----TTSCEEEEEEHHHHHHH--GGGHHHHHHTTCCCEEEEEECSBCHHHHHHHHHHHSSCC
T ss_pred cchhhhHHHHHHHHHHhC----CCCcEEEEEeeHHHHhh--HHHHHHHHHhCCCeEEEEEECCCcccchHHHHhhcCCCc
Confidence 589999999999999995 47889999999999875 589999999999966655555 588765432
Q ss_pred -cccCCcCHHHHHhhcCeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCCC
Q 016909 213 -DQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGH 271 (380)
Q Consensus 213 -~~~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R~~g 271 (380)
......++.+++++||+++++|+ +++++.+++++|++ .++|+|||+.|+|..+
T Consensus 497 ~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~~----~~gp~liev~~~~~~~ 550 (589)
T 2pgn_A 497 WTEFMNPDWVGIAKAFGAYGESVR--ETGDIAGALQRAID----SGKPALIEIPVSKTQG 550 (589)
T ss_dssp SCBCCCCCHHHHHHHHTCEEEECT--TTCCHHHHHHHHHH----HCSCEEEEEECCSSSS
T ss_pred cccCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHh----CCCCEEEEEEecCCCC
Confidence 22335789999999999999998 67788888888875 4799999999987643
No 34
>3eya_A Pyruvate dehydrogenase [cytochrome]; pyruvate oxidase, membrane-associated flavoprotein dehydrogenase, interactions with lipids cell membrane; HET: TDP FAD; 2.50A {Escherichia coli} PDB: 3ey9_A*
Probab=99.61 E-value=1.4e-15 Score=157.81 Aligned_cols=118 Identities=20% Similarity=0.266 Sum_probs=93.8
Q ss_pred ccccccCccHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEE-EEcCCcceeeecc-------
Q 016909 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFI-CRNNGWAISTPIS------- 212 (380)
Q Consensus 141 ~~g~lG~~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~v-v~NN~~~i~~~~~------- 212 (380)
..|++|.++|.|+|+++|. +++.|||++|||+++++ .++|++|.++++|+++| ++||+|++.....
T Consensus 404 ~~g~mG~~l~~AiGaala~----~~~~vv~i~GDGs~~~~--~~~L~ta~~~~l~~~ivv~nN~~~g~~~~~~~~~~~~~ 477 (549)
T 3eya_A 404 NHGSMANAMPQALGAQATE----PERQVVAMCGDGGFSML--MGDFLSVVQMKLPVKIVVFNNSVLGFVAMEMKAGGYLT 477 (549)
T ss_dssp TTCCTTCHHHHHHHHHHHS----TTSCEEEEEEHHHHHHT--GGGHHHHHHTTCCCEEEEEECSBCCCC-----------
T ss_pred CCchhhhHHHHHHHHHHhC----CCCcEEEEEccchhhcc--HHHHHHHHHhCCCeEEEEEeCCccHHHHHHHHhcCCCC
Confidence 4589999999999999985 57889999999999765 57899999999986555 4555687643211
Q ss_pred --cccCCcCHHHHHhhcCeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCC
Q 016909 213 --DQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVG 270 (380)
Q Consensus 213 --~~~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R~~ 270 (380)
......++.+++++||+++++|+ +++++.++++++++ .+||+|||+.|.+..
T Consensus 478 ~~~~~~~~d~~~~a~a~G~~~~~v~--~~~~l~~al~~a~~----~~gp~liev~~~~~~ 531 (549)
T 3eya_A 478 DGTELHDTNFARIAEACGITGIRVE--KASEVDEALQRAFS----IDGPVLVDVVVAKEE 531 (549)
T ss_dssp -CCBCCCCCHHHHHHHTTSEEEEEC--SGGGHHHHHHHHHH----SSSCEEEEEEBCCCC
T ss_pred cCCcCCCCCHHHHHHHcCCcEEEeC--CHHHHHHHHHHHHh----CCCCEEEEEEecccc
Confidence 11234689999999999999997 78888888888765 589999999997753
No 35
>2vbf_A Branched-chain alpha-ketoacid decarboxylase; KDCA, flavoprotein, THDP-dependent enzymes, thiamine pyrophosphate, lyase; HET: TPP; 1.60A {Lactococcus lactis} PDB: 2vbg_A*
Probab=99.60 E-value=1.2e-15 Score=158.94 Aligned_cols=117 Identities=20% Similarity=0.246 Sum_probs=94.4
Q ss_pred ccccccCccHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEE-EcCCcceeeecc------c
Q 016909 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFIC-RNNGWAISTPIS------D 213 (380)
Q Consensus 141 ~~g~lG~~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv-~NN~~~i~~~~~------~ 213 (380)
..|+||+++|.|+|+|+|. ++++|||++|||+++++ +++|++|+++++|+++|| +||+|++..... .
T Consensus 423 ~~g~mG~~l~~A~Gaala~----~~~~vv~~~GDG~~~~~--~~eL~ta~~~~l~~~ivv~nN~~~~~~~~~~~~~~~~~ 496 (570)
T 2vbf_A 423 LWGSIGYTFPAALGSQIAD----KESRHLLFIGDGSLQLT--VQELGLSIREKLNPICFIINNDGYTVEREIHGPTQSYN 496 (570)
T ss_dssp TTCCTTTHHHHHHHHHHHC----TTSEEEEEEEHHHHHHH--GGGHHHHHHTTCCCEEEEEESSSCHHHHHHSCTTCGGG
T ss_pred cchhhhhhHHHHHHHHHhC----CCCcEEEEEcchhhhcC--HHHHHHHHHcCCCCEEEEEECCchHHHHHHhccCCCcc
Confidence 4799999999999999995 47899999999999874 567999999999855554 566798765322 1
Q ss_pred ccCCcCHHHHHhhcCee-----EEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeec
Q 016909 214 QFRSDGAVVKGRAYGVR-----SIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 268 (380)
Q Consensus 214 ~~~~~~~~~~a~a~G~~-----~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R 268 (380)
.....++.+++++||++ +++|+ +++++.++++++. ++.++|+|||+.|+|
T Consensus 497 ~~~~~d~~~~a~a~G~~~~~~~~~~v~--~~~el~~al~~a~---~~~~~p~liev~~~~ 551 (570)
T 2vbf_A 497 DIPMWNYSKLPETFGATEDRVVSKIVR--TENEFVSVMKEAQ---ADVNRMYWIELVLEK 551 (570)
T ss_dssp CCCCCCGGGHHHHTTCCTTTEEEEEEC--BHHHHHHHHHHHH---HCTTSEEEEEEECCT
T ss_pred CCCCCCHHHHHHHcCCCcCCcceEEec--CHHHHHHHHHHHH---hcCCCcEEEEEEcCc
Confidence 12346899999999998 88997 7889888888752 246899999999976
No 36
>1ybh_A Acetolactate synthase, chloroplast; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: CIE NHE FAD P22; 2.50A {Arabidopsis thaliana} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1yhy_A* 1yhz_A* 1yi0_A* 1yi1_A* 1z8n_A* 3ea4_A* 3e9y_A*
Probab=99.59 E-value=2.3e-15 Score=157.37 Aligned_cols=119 Identities=21% Similarity=0.224 Sum_probs=96.7
Q ss_pred ccccccCccHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEE-EcCCcceeeecc-------
Q 016909 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFIC-RNNGWAISTPIS------- 212 (380)
Q Consensus 141 ~~g~lG~~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv-~NN~~~i~~~~~------- 212 (380)
..|++|+++|.|+|+|+|. +++.|||++|||+++++ +++|++|+++++|+++|| +||+|++.....
T Consensus 424 ~~G~~G~~l~~AiGaala~----~~~~vv~i~GDGs~~~~--~~~L~ta~~~~l~~~ivv~NN~~~~~~~~~~~~~~~~~ 497 (590)
T 1ybh_A 424 GLGAMGFGLPAAIGASVAN----PDAIVVDIDGDGSFIMN--VQELATIRVENLPVKVLLLNNQHLGMVMQWEDRFYKAN 497 (590)
T ss_dssp SSCCTTCHHHHHHHHHHHC----TTSCEEEEEEHHHHHHT--TTHHHHHHHTTCCEEEEEEECSBCHHHHHHHHHHSTTC
T ss_pred CcccccchHHHHHHHHHhC----CCCcEEEEEccchhhcc--HHHHHHHHHhCCCcEEEEEECCcchHHHHHHHHhcCCc
Confidence 3589999999999999995 47899999999999875 568999999999966655 555788754211
Q ss_pred ---cc--c------CCcCHHHHHhhcCeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCCC
Q 016909 213 ---DQ--F------RSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGH 271 (380)
Q Consensus 213 ---~~--~------~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R~~g 271 (380)
.. . ...++.+++++||+++++|+ +++++.+++++|++ .++|+|||+.|.|...
T Consensus 498 ~~~~~~~~p~~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~~----~~gp~liev~~~~~~~ 561 (590)
T 1ybh_A 498 RAHTFLGDPAQEDEIFPNMLLFAAACGIPAARVT--KKADLREAIQTMLD----TPGPYLLDVICPHQEH 561 (590)
T ss_dssp CCSCBCSCGGGTTSCSSCHHHHHHHTTCCEEEEC--BHHHHHHHHHHHHH----SSSCEEEEEECCTTCC
T ss_pred cccccccccccccCCCCCHHHHHHHcCCeEEEeC--CHHHHHHHHHHHHh----CCCCEEEEEEecCCcc
Confidence 00 1 14589999999999999998 88999998888875 4799999999998653
No 37
>2vbi_A Pyruvate decarboxylase; thiamine pyrophosphate, lyase, pyruv flavoprotein, THDP-dependent enzyme; HET: TPP; 2.75A {Acetobacter pasteurianus}
Probab=99.59 E-value=1.2e-15 Score=158.87 Aligned_cols=117 Identities=22% Similarity=0.268 Sum_probs=95.9
Q ss_pred ccccccCccHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEE-EEEcCCcceeeeccc----cc
Q 016909 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIF-ICRNNGWAISTPISD----QF 215 (380)
Q Consensus 141 ~~g~lG~~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~-vv~NN~~~i~~~~~~----~~ 215 (380)
..|+||+++|.|+|+|+|. ++++|||++|||+++++ +++|++|+++++|+++ |++||+|++...... ..
T Consensus 407 ~~g~mG~~l~~A~G~ala~----~~~~vv~~~GDG~~~~~--~~eL~ta~~~~l~~~ivv~nN~~~~~~~~~~~~~~~~~ 480 (566)
T 2vbi_A 407 QWGHIGWSVPSAFGNAMGS----QDRQHVVMVGDGSFQLT--AQEVAQMVRYELPVIIFLINNRGYVIEIAIHDGPYNYI 480 (566)
T ss_dssp TTCCTTTHHHHHHHHHHTC----TTSEEEEEEEHHHHHHH--GGGHHHHHHTTCCCEEEEEECSSCHHHHTTSCCGGGCC
T ss_pred cccchhhHHHHHHHHHHhC----CCCcEEEEEcchHHHhh--HHHHHHHHHhCCCcEEEEEECCcceEEEeeccCCccCC
Confidence 4689999999999999985 57899999999999864 5679999999998555 556668988765431 22
Q ss_pred CCcCHHHHHhhcCe-----eEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeec
Q 016909 216 RSDGAVVKGRAYGV-----RSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 268 (380)
Q Consensus 216 ~~~~~~~~a~a~G~-----~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R 268 (380)
...++.+++++||+ ++++|+ +++++.++++++++. .++|+|||+.|.|
T Consensus 481 ~~~d~~~~a~a~G~~~~~~~~~~v~--~~~el~~al~~a~~~---~~gp~liev~~~~ 533 (566)
T 2vbi_A 481 KNWDYAGLMEVFNAGEGHGLGLKAT--TPKELTEAIARAKAN---TRGPTLIECQIDR 533 (566)
T ss_dssp CCCCTTTHHHHHHTTTCCCEEEEEC--SHHHHHHHHHHHHHC---CSSCEEEEEECCT
T ss_pred CCCCHHHHHHHcCCCCCCccEEEeC--CHHHHHHHHHHHHhc---CCCcEEEEEEeCc
Confidence 34689999999999 999998 889999998888752 2799999999976
No 38
>2nxw_A Phenyl-3-pyruvate decarboxylase; thiamine pyrophosphate, asymmetric dimer of dimers, open ACT loops, lyase; HET: TPP; 1.50A {Azospirillum brasilense} PDB: 2q5j_A* 2q5l_A* 2q5o_A* 2q5q_A*
Probab=99.59 E-value=1.3e-15 Score=158.57 Aligned_cols=115 Identities=19% Similarity=0.198 Sum_probs=94.5
Q ss_pred cccccCccHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEE-EcCCcceeeecc-----ccc
Q 016909 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFIC-RNNGWAISTPIS-----DQF 215 (380)
Q Consensus 142 ~g~lG~~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv-~NN~~~i~~~~~-----~~~ 215 (380)
.|+||+++|.|+|+|+|. ++++|||++|||+++ +.+++|++|+++++|+++|| +||+|++..... ...
T Consensus 421 ~g~mG~~l~~A~G~ala~----~~~~vv~i~GDG~~~--~~~~~l~ta~~~~l~~~ivv~nN~~~~~~~~~~~~~~~~~~ 494 (565)
T 2nxw_A 421 YAGMGFGVPAGIGAQCVS----GGKRILTVVGDGAFQ--MTGWELGNCRRLGIDPIVILFNNASWEMLRTFQPESAFNDL 494 (565)
T ss_dssp TCCTTCHHHHHHHHHHHT----TTCCEEEEEEHHHHH--HHGGGGGGHHHHTCCCEEEEEECSBCHHHHHHCTTCGGGBC
T ss_pred cccccccchHHHHHHHhC----CCCcEEEEEechHHH--hhHHHHHHHHHhCCCCEEEEEECCCCcEEeeecccCCCCcC
Confidence 589999999999999995 478899999999998 56788999999999966555 555688754321 123
Q ss_pred CCcCHHHHHhhcCeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcE-EEEEEeec
Q 016909 216 RSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPI-LIEALTYR 268 (380)
Q Consensus 216 ~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~-lIe~~t~R 268 (380)
...++.+++++||+++++|+ +++++.++++++++ .++|+ |||+.|+|
T Consensus 495 ~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~~----~~gp~~liev~~~~ 542 (565)
T 2nxw_A 495 DDWRFADMAAGMGGDGVRVR--TRAELKAALDKAFA----TRGRFQLIEAMIPR 542 (565)
T ss_dssp CCCCHHHHTGGGTSEEEEEC--BHHHHHHHHHHHHH----CCSSCEEEEEECCT
T ss_pred CCCCHHHHHHHcCCCEEEeC--CHHHHHHHHHHHHh----cCCCeEEEEEEccc
Confidence 45689999999999999998 78999999888875 46898 99999965
No 39
>2wvg_A PDC, pyruvate decarboxylase; thiamine diphosphate, lyase, flavoprotein, metal-binding, alcohol fermentation; HET: TPU; 1.75A {Zymomonas mobilis} PDB: 2wva_A* 2wvh_A 3oe1_A* 1zpd_A*
Probab=99.58 E-value=2.3e-15 Score=156.62 Aligned_cols=117 Identities=20% Similarity=0.239 Sum_probs=96.1
Q ss_pred ccccccCccHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEE-EEEcCCcceeeeccc----cc
Q 016909 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIF-ICRNNGWAISTPISD----QF 215 (380)
Q Consensus 141 ~~g~lG~~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~-vv~NN~~~i~~~~~~----~~ 215 (380)
..|+||+++|.|+|+|+|. ++++|||++|||+++++ +++|++|.++++|+++ |++||+|++...... ..
T Consensus 411 ~~g~~G~~l~~A~G~ala~----~~~~vv~i~GDGs~~~~--~~el~ta~~~~l~~~ivv~NN~~~~~~~~~~~~~~~~~ 484 (568)
T 2wvg_A 411 QWGHIGWSVPAAFGYAVGA----PERRNILMVGDGSFQLT--AQEVAQMVRLKLPVIIFLINNYGYTIEVMIHDGPYNNI 484 (568)
T ss_dssp TTCCTTTHHHHHHHHHHHC----TTSEEEEEEEHHHHHHH--GGGHHHHHHTTCCCEEEEEECSSCHHHHTTSCCGGGCC
T ss_pred CcchhhhHHHHHHHHHHhC----CCCcEEEEEcChhHhcc--HHHHHHHHHcCCCcEEEEEECCcceEeeeeccCCCcCC
Confidence 4689999999999999995 57899999999999863 6679999999998655 556677988765431 22
Q ss_pred CCcCHHHHHhhcCe---------eEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeec
Q 016909 216 RSDGAVVKGRAYGV---------RSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 268 (380)
Q Consensus 216 ~~~~~~~~a~a~G~---------~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R 268 (380)
...++.+++++||+ ++++|+ +.+++.++++++++. .++|+|||+.|+|
T Consensus 485 ~~~d~~~~a~a~G~~~~~~~~~~~~~~v~--~~~el~~al~~a~~~---~~gp~liev~~~~ 541 (568)
T 2wvg_A 485 KNWDYAGLMEVFNGNGGYDSGAGKGLKAK--TGGELAEAIKVALAN---TDGPTLIECFIGR 541 (568)
T ss_dssp CCCCHHHHHHHHHCTTSSSCCCCEEEEES--BHHHHHHHHHHHHHC---CSSCEEEEEECCT
T ss_pred CCCCHHHHHHHhCCCcccccCCcceEEeC--CHHHHHHHHHHHHhc---CCCcEEEEEEcCc
Confidence 34689999999999 999997 789999999888753 2799999999976
No 40
>2c31_A Oxalyl-COA decarboxylase; oxalate, thiamin diphosphate, flavoprotein, lyase, thiamine pyrophosphate; HET: TZD ADP; 1.73A {Oxalobacter formigenes} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2ji6_A* 2ji7_A* 2ji8_A* 2ji9_A* 2jib_A*
Probab=99.58 E-value=4e-15 Score=154.88 Aligned_cols=117 Identities=18% Similarity=0.149 Sum_probs=95.6
Q ss_pred cccccccCccHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCC-c-ceeeec---cc-
Q 016909 140 TVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-W-AISTPI---SD- 213 (380)
Q Consensus 140 ~~~g~lG~~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~-~-~i~~~~---~~- 213 (380)
+..|++|+++|.|+|+|+| ++++|||++|||+|++. .++|++|+++++|+++||.||+ | ++.... ..
T Consensus 423 g~~g~~G~~l~~AiGaala-----~~~~vv~i~GDGsf~~~--~~el~ta~~~~l~~~ivv~NN~~~~~~~~~~~~~~~~ 495 (568)
T 2c31_A 423 GTWGVMGIGMGYCVAAAAV-----TGKPVIAVEGDSAFGFS--GMELETICRYNLPVTVIIMNNGGIYKGNEADPQPGVI 495 (568)
T ss_dssp TTTTCSSCHHHHHHHHHHH-----HCSCEEEEEEHHHHHTT--GGGHHHHHHTTCCEEEEEEESSBSSCSCCCCSBTTBC
T ss_pred CCCccccccHHHHHHHHhC-----CCCcEEEEEcchHhhcc--HHHHHHHHHhCCCeEEEEEeCchhHHHHHHHhhcCCc
Confidence 3468999999999999998 56789999999999764 5779999999999888887776 3 443211 00
Q ss_pred ---ccCCcCHHHHHhhcCeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecC
Q 016909 214 ---QFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRV 269 (380)
Q Consensus 214 ---~~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R~ 269 (380)
.....++.+++++||+++++|+ +++++.++++++++ .++|+|||+.|.|.
T Consensus 496 ~~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~~----~~~p~liev~~~~~ 548 (568)
T 2c31_A 496 SCTRLTRGRYDMMMEAFGGKGYVAN--TPAELKAALEEAVA----SGKPCLINAMIDPD 548 (568)
T ss_dssp CTTBCCCCCHHHHHHTTTCEEEEES--SHHHHHHHHHHHHH----HTSCEEEEEEBCTT
T ss_pred ccCcCCCCCHHHHHHHcCCeEEEeC--CHHHHHHHHHHHHh----CCCCEEEEEEeccc
Confidence 0345689999999999999998 89999999998875 47999999999874
No 41
>1ovm_A Indole-3-pyruvate decarboxylase; thiamine diphosphate, indole-3-acetic acid, TDP dependent enzyme, lyase; HET: TPP; 2.65A {Enterobacter cloacae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9
Probab=99.58 E-value=1e-15 Score=158.64 Aligned_cols=116 Identities=19% Similarity=0.211 Sum_probs=93.5
Q ss_pred ccccccCccHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEE-EcCCcceeeecc------c
Q 016909 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFIC-RNNGWAISTPIS------D 213 (380)
Q Consensus 141 ~~g~lG~~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv-~NN~~~i~~~~~------~ 213 (380)
..|+||+++|.|+|+|+|. ++++|||++|||+++++ +++|.+|.++++|+++|| +||+|++..... .
T Consensus 406 ~~g~mG~~l~~A~G~a~a~----~~~~vv~~~GDG~~~~~--~~el~ta~~~~l~~~ivv~nN~~~~~~~~~~~~~~~~~ 479 (552)
T 1ovm_A 406 LWGSIGYTLAAAFGAQTAC----PNRRVIVLTGDGAAQLT--IQELGSMLRDKQHPIILVLNNEGYTVERAIHGAEQRYN 479 (552)
T ss_dssp TTCCTTHHHHHHHHHHHHC----TTSCEEEEEEHHHHHHH--TTHHHHHHHTTCCCEEEEEESSSCHHHHHHSCTTCGGG
T ss_pred hhHhhhhHHHHHHHHHHhC----CCCcEEEEECchHHHhH--HHHHHHHHHhCCCCEEEEEECCCCeEEEeeccCCCCcc
Confidence 4689999999999999995 47889999999999754 677999999999866655 555698864321 1
Q ss_pred ccCCcCHHHHHhhcCe----eEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeec
Q 016909 214 QFRSDGAVVKGRAYGV----RSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 268 (380)
Q Consensus 214 ~~~~~~~~~~a~a~G~----~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R 268 (380)
.....++.+++++||+ ++++|+ +++++.+++++++ +.++|+|||+.|.+
T Consensus 480 ~~~~~d~~~~a~a~G~~~~~~~~~v~--~~~~l~~al~~a~----~~~gp~liev~~~~ 532 (552)
T 1ovm_A 480 DIALWNWTHIPQALSLDPQSECWRVS--EAEQLADVLEKVA----HHERLSLIEVMLPK 532 (552)
T ss_dssp CCCCCCGGGSTTTSCSSCCEEEEEEC--BHHHHHHHHHHHT----TCSSEEEEEEECCT
T ss_pred cCCCCCHHHHHHHhCCCcCCCEEEeC--CHHHHHHHHHHHH----hCCCCEEEEEEcCc
Confidence 1234689999999999 999998 7888888887764 46899999999965
No 42
>2q28_A Oxalyl-COA decarboxylase; lyase, oxalate degradation, thiami diphosphate, lyase; HET: TPP ADP MES; 1.74A {Escherichia coli} PDB: 2q27_A* 2q29_A*
Probab=99.56 E-value=8e-15 Score=152.38 Aligned_cols=118 Identities=14% Similarity=0.089 Sum_probs=95.3
Q ss_pred cccccccCccHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCC-c-ceeeec------
Q 016909 140 TVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-W-AISTPI------ 211 (380)
Q Consensus 140 ~~~g~lG~~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~-~-~i~~~~------ 211 (380)
+..|++|+++|.|+|+++| +++.|||++|||+|++. .++|++|+++++|+++||.||+ | ++....
T Consensus 418 g~~g~~G~~l~~AiGaa~a-----~~~~vv~i~GDGsf~~~--~~el~ta~~~~l~~~ivv~NN~~~~~~~~~~~~~~~~ 490 (564)
T 2q28_A 418 GTWGVMGIGMGYAIGASVT-----SGSPVVAIEGDSAFGFS--GMEIETICRYNLPVTIVIFNNGGIYRGDGVDLSGAGA 490 (564)
T ss_dssp TTTTCTTCHHHHHHHHHHH-----HCSCEEEEEEHHHHHTT--GGGHHHHHHTTCCEEEEEEECSBSSCSCCCCTTSSCC
T ss_pred CCCCcccchHHHHHHHhhc-----CCCcEEEEEcchHhhcc--HHHHHHHHHhCCCeEEEEEeCchhHHHHHHHHhccCC
Confidence 3468999999999999998 57889999999999764 4779999999999888877776 3 543211
Q ss_pred -cc--ccCCcCHHHHHhhcCeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCC
Q 016909 212 -SD--QFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVG 270 (380)
Q Consensus 212 -~~--~~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R~~ 270 (380)
.. .....++.+++++||+++++|+ +++++.++++++++ .++|+|||+.|.|..
T Consensus 491 ~~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~~----~~~p~liev~~~~~~ 546 (564)
T 2q28_A 491 PSPTDLLHHARYDKLMDAFRGVGYNVT--TTDELRHALTTGIQ----SRKPTIINVVIDPAA 546 (564)
T ss_dssp CCTTBCCTTCCGGGGGGGGTCEEEEEC--SHHHHHHHHHHHHH----HTSCEEEEEEBCTTS
T ss_pred ccccccCCCCCHHHHHHHcCCeEEEeC--CHHHHHHHHHHHHh----CCCCEEEEEEecccc
Confidence 00 1124689999999999999998 89999999988875 479999999998753
No 43
>2x7j_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene -1-carboxylate synthase; transferase, metal-binding; HET: TPP; 2.35A {Bacillus subtilis}
Probab=99.52 E-value=4.1e-15 Score=155.95 Aligned_cols=114 Identities=18% Similarity=0.058 Sum_probs=90.6
Q ss_pred cccccCccHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEE-EcCCcceeeeccc-------
Q 016909 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFIC-RNNGWAISTPISD------- 213 (380)
Q Consensus 142 ~g~lG~~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv-~NN~~~i~~~~~~------- 213 (380)
.+.+|+++|.|+|+|+|. +++|||++|||+|+++ .++|++|+++++|+++|| +||+|++......
T Consensus 454 ~~~ig~~l~~AiGaala~-----~~~vv~i~GDGsf~~~--~~eL~ta~~~~lp~~ivv~NN~~~~i~~~~~~~q~~~~~ 526 (604)
T 2x7j_A 454 ANGIDGVVSSAMGVCEGT-----KAPVTLVIGDLSFYHD--LNGLLAAKKLGIPLTVILVNNDGGGIFSFLPQASEKTHF 526 (604)
T ss_dssp TCCSSSHHHHHHHHHHHH-----TSCEEEEEEHHHHHHT--GGGGHHHHHHCCCEEEEEEECSSCGGGGGSGGGSCHHHH
T ss_pred cCCcCcHHHHHHHHHhcC-----CCcEEEEEccHHHHhH--HHHHHHhhhcCCCeEEEEEeCCCCcccccCCCCccchhh
Confidence 467899999999999983 6789999999999875 456999999999976655 5557887542210
Q ss_pred -----ccCCcCHHHHHhhcCeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeec
Q 016909 214 -----QFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 268 (380)
Q Consensus 214 -----~~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R 268 (380)
.....|+.+++++||+++++|+ +++++.+++++|+ +.++|+|||+.|.|
T Consensus 527 ~~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~----~~~gp~liev~~~~ 580 (604)
T 2x7j_A 527 EDLFGTPTGLDFKHAAALYGGTYSCPA--SWDEFKTAYAPQA----DKPGLHLIEIKTDR 580 (604)
T ss_dssp HHHTTCCCCCCTHHHHHHTTCEEECCS--SHHHHHHHCCCCC----SSCCEEEEEEECCH
T ss_pred HhhccCCCCCCHHHHHHHcCCeEEecC--CHHHHHHHHHHHH----hCCCCEEEEEECCc
Confidence 0124689999999999999998 7888877777665 35899999999854
No 44
>3hww_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- carboxylate synthase; menaquinone, THDP, Mg, vitamin K2, carboxylase, magnesium; HET: AKG; 1.95A {Escherichia coli k-12} PDB: 3flm_A* 3hwx_A* 2jlc_A* 2jla_A*
Probab=99.49 E-value=2.2e-14 Score=148.92 Aligned_cols=114 Identities=18% Similarity=0.114 Sum_probs=85.8
Q ss_pred ccccccCccHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCC-cceeeec-------c
Q 016909 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPI-------S 212 (380)
Q Consensus 141 ~~g~lG~~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~-~~i~~~~-------~ 212 (380)
..|++|. +|.|+|+++| ++++|||++|||+|++. .++|++|.++++|+++||.||+ |++.... .
T Consensus 415 ~~g~~G~-l~~A~Gaa~a-----~~~~vv~i~GDGsf~~~--~~eL~ta~~~~lpv~ivv~NN~~~~~~~~~~~~~~~~~ 486 (556)
T 3hww_A 415 ASGIDGL-LSTAAGVQRA-----SGKPTLAIVGDLSALYD--LNALALLRQVSAPLVLIVVNNNGGQIFSLLPTPQSERE 486 (556)
T ss_dssp SCCSSSH-HHHHHHHHHH-----HCCCEEEEEEHHHHHHT--GGGHHHHTTCSSCEEEEEEESCC---------------
T ss_pred ccccccH-HHHHHHHHhc-----CCCcEEEEEccHHhhhc--chhhHhhcccCCCcEEEEEECCCCCcccCCCCcchhHH
Confidence 3456666 9999999998 36789999999999754 4569999999999888777776 5654321 1
Q ss_pred ---cccCCcCHHHHHhhcCeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeec
Q 016909 213 ---DQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYR 268 (380)
Q Consensus 213 ---~~~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R 268 (380)
......|+.++|++||+++++|+ +.+++.+++++++ +.+||+|||+.|.|
T Consensus 487 ~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~~l~~al~~a~----~~~gp~liev~~~~ 539 (556)
T 3hww_A 487 RFYLMPQNVHFEHAAAMFELKYHRPQ--NWQELETAFADAW----RTPTTTVIEMVVND 539 (556)
T ss_dssp --CCCCCCCCSHHHHHHTTCEEECCS--SHHHHHHHHHHHT----TSSSEEEEEEECCS
T ss_pred HhccCCCCCCHHHHHHHcCCcEEecC--CHHHHHHHHHHHH----hCCCCEEEEEECCc
Confidence 11235689999999999999998 7888877777665 46899999999854
No 45
>3lq1_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- 1-carboxylate synthase; menaquinone biosynthesis, sephchc synthase, structural genomics; 2.60A {Listeria monocytogenes}
Probab=99.45 E-value=4.1e-14 Score=147.62 Aligned_cols=111 Identities=16% Similarity=0.061 Sum_probs=79.1
Q ss_pred ccCccHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcC-Ccceeeec---c------cc
Q 016909 145 IATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN-GWAISTPI---S------DQ 214 (380)
Q Consensus 145 lG~~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN-~~~i~~~~---~------~~ 214 (380)
+|+++|.|+|+|+ ++++|||++|||+|++. .++|++|.++++|+++||.|| +|++.... . ..
T Consensus 438 ~~g~l~~AiGaa~------~~~~vv~i~GDGsf~~~--~~eL~ta~~~~l~~~ivv~NN~~~g~~~~~~~~~~~~~~~~~ 509 (578)
T 3lq1_A 438 IDGVVSSALGASV------VFQPMFLLIGDLSFYHD--MNGLLMAKKYKMNLTIVIVNNDGGGIFSFLPQANEPKYFESL 509 (578)
T ss_dssp SSSHHHHHHHHTT------TSSSEEEEEEHHHHHHT--GGGGHHHHHTTCCEEEEEECCC--------------------
T ss_pred cccHHHHHHHHhc------CCCCEEEEEchHHHHhh--HHHHHhhccCCCCeEEEEEECCcCccccccccccccchhhhh
Confidence 3446999999863 37899999999999754 567999999999988777766 57765421 0 00
Q ss_pred ---cCCcCHHHHHhhcCeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecC
Q 016909 215 ---FRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRV 269 (380)
Q Consensus 215 ---~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R~ 269 (380)
....|+.++|++||+++++|+ +++++.+++++|++ .+||+|||+.|.|.
T Consensus 510 ~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~~----~~gp~liev~~~~~ 561 (578)
T 3lq1_A 510 FGTSTELDFRFAAAFYDADYHEAK--SVDELEEAIDKASY----HKGLDIIEVKTNRH 561 (578)
T ss_dssp -----CCCTHHHHHHTTCEEEECC--SHHHHHHHHHHHTT----SSSEEEEEEC----
T ss_pred ccCCCCCCHHHHHHHcCCceEecC--CHHHHHHHHHHHHh----CCCCEEEEEECCcc
Confidence 124589999999999999998 88888888887764 58999999998663
No 46
>2c42_A Pyruvate-ferredoxin oxidoreductase; 4Fe-4S, iron, iron-sulfur, iron-sulfur cluster, pyruvate catabolism, TPP-dependent enzyme; HET: TPP; 1.78A {Desulfovibrio africanus} SCOP: c.36.1.8 c.36.1.12 c.48.1.3 c.64.1.1 d.58.1.5 PDB: 1b0p_A* 1kek_A* 2c3o_A* 2c3p_A* 2c3u_A* 2c3y_A* 2c3m_A* 2pda_A* 2uza_A*
Probab=98.91 E-value=2.7e-09 Score=119.49 Aligned_cols=99 Identities=14% Similarity=0.140 Sum_probs=76.3
Q ss_pred CceeEEEeCcc-ccCcchHHHHHHHHHHcCCCEEEEEEcCC-cceeeecccc----------------cCCcCHHHHHhh
Q 016909 165 DACAVTYFGDG-GTSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPISDQ----------------FRSDGAVVKGRA 226 (380)
Q Consensus 165 ~~~vv~~~GDG-~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~-~~i~~~~~~~----------------~~~~~~~~~a~a 226 (380)
++.|||+.||| +++.|. ..|.+|..+++||++||.||+ |++.+.+... ....|+.++|++
T Consensus 953 ~~~Vv~i~GDG~~~~mg~--~eL~ta~~~~~~v~iiVlnN~~yg~tg~Q~s~~t~~~~~t~~~~~g~~~~~~D~~~iA~a 1030 (1231)
T 2c42_A 953 KKSVWIFGGDGWAYDIGY--GGLDHVLASGEDVNVFVMDTEVYSNTGGQSSKATPTGAVAKFAAAGKRTGKKDLARMVMT 1030 (1231)
T ss_dssp CCEEEEEEEHHHHHTTTH--HHHHHHHHTTCSCEEEEEECSSBTTTTCBCCTTSCTTCCBBTBTTCCSSCCCCHHHHHHT
T ss_pred CCcEEEEeCcHHHHHcch--HHHHHHHHhCCCeEEEEEECHHHHhHHhhhccCCCCCceeeecccCCCCCchhHHHHHHH
Confidence 47899999999 788773 469999999999887777665 5554311110 123589999999
Q ss_pred cCeeEEE-EeC-CCHHHHHHHHHHHHHHhhccCCcEEEEEEeecC
Q 016909 227 YGVRSIR-VDG-NDALAIYSAVHAAREMAIGEGRPILIEALTYRV 269 (380)
Q Consensus 227 ~G~~~~~-VdG-~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R~ 269 (380)
||++++. +.- .++.++.+++++|+++ +||+||++.+...
T Consensus 1031 ~G~~~va~~~v~~~~~~l~~al~eAl~~----~GP~lI~v~~~c~ 1071 (1231)
T 2c42_A 1031 YGYVYVATVSMGYSKQQFLKVLKEAESF----PGPSLVIAYATCI 1071 (1231)
T ss_dssp TSSSEEEEECTTTCHHHHHHHHHHHHHS----SSCEEEEEECCCG
T ss_pred CCCCEEEEEeccCCHHHHHHHHHHHHhc----CCCEEEEEeecCc
Confidence 9999986 433 5999999999999874 8999999998654
No 47
>2iht_A Carboxyethylarginine synthase; thiamin diphosphate complex, transferase; HET: MSE TPP; 2.00A {Streptomyces clavuligerus} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1upb_A* 1upc_A* 1upa_A* 2ihu_A* 2ihv_A*
Probab=94.66 E-value=0.12 Score=53.14 Aligned_cols=109 Identities=17% Similarity=0.130 Sum_probs=76.6
Q ss_pred HHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcceeeecccccCCcCHHHHHhhcCe
Q 016909 150 PHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGV 229 (380)
Q Consensus 150 p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~G~ 229 (380)
-+|.|.|.+. +.-.+++|..|=|.++ ..-++..|..-++|||+|.-+......... ......|....++.+--
T Consensus 62 ~~A~Gyar~t---g~p~v~~~TsGpG~~N---~~~~v~~A~~~~~Pll~itg~~~~~~~~~~-~~~Q~~d~~~~~~~~~k 134 (573)
T 2iht_A 62 VAADVLARIT---GRPQACWATLGPGMTN---LSTGIATSVLDRSPVIALAAQSESHDIFPN-DTHQCLDSVAIVAPMSK 134 (573)
T ss_dssp HHHHHHHHHH---CSCEEEEECTTHHHHH---HHHHHHHHHHHTCCEEEEEEESCGGGCCTT-TSTTCCCHHHHHGGGSS
T ss_pred HHHHHHHHHH---CCCEEEEEccCchHHH---HHHHHHHHHhhCCCEEEEcccCcccccCCc-CccccCCHHHHHHhHhh
Confidence 4566666553 4445667777877775 455677788889999999877654432220 11122367788888877
Q ss_pred eEEEEeCCCHHHHHHHHHHHHHHhhccC-CcEEEEEEee
Q 016909 230 RSIRVDGNDALAIYSAVHAAREMAIGEG-RPILIEALTY 267 (380)
Q Consensus 230 ~~~~VdG~D~~av~~a~~~A~~~ar~~~-gP~lIe~~t~ 267 (380)
...++. +++++...+++|+..+..++ ||+.|++-..
T Consensus 135 ~~~~v~--~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~d 171 (573)
T 2iht_A 135 YAVELQ--RPHEITDLVDSAVNAAMTEPVGPSFISLPVD 171 (573)
T ss_dssp EEEECC--SGGGHHHHHHHHHHHHTBSSCCCEEEEEEHH
T ss_pred EEEEcC--CHHHHHHHHHHHHHHHhcCCCceEEEEecch
Confidence 777776 88889999999998888775 9999998653
No 48
>1ybh_A Acetolactate synthase, chloroplast; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: CIE NHE FAD P22; 2.50A {Arabidopsis thaliana} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1yhy_A* 1yhz_A* 1yi0_A* 1yi1_A* 1z8n_A* 3ea4_A* 3e9y_A*
Probab=94.58 E-value=0.12 Score=53.47 Aligned_cols=108 Identities=19% Similarity=0.188 Sum_probs=76.6
Q ss_pred cHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcceeeecccccCCcCHHHHHhhcC
Q 016909 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 228 (380)
Q Consensus 149 ~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~G 228 (380)
.-+|.|.|.+. +.-.+++|..|=|+++ ..-++..|...++|||+|+-+-....... ......|....++.+-
T Consensus 63 a~~A~Gyar~t---g~p~v~~~TsGpG~~N---~~~gv~~A~~~~vPll~itg~~~~~~~g~--~~~Q~~d~~~~~~~~~ 134 (590)
T 1ybh_A 63 VFAAEGYARSS---GKPGICIATSGPGATN---LVSGLADALLDSVPLVAITGQVPRRMIGT--DAFQETPIVEVTRSIT 134 (590)
T ss_dssp HHHHHHHHHHH---SSCEEEEECTTHHHHT---THHHHHHHHHHTCCEEEEEEECCGGGTTT--TCTTCCCHHHHHGGGS
T ss_pred HHHHHHHHHHH---CCCEEEEeccCchHHH---HHHHHHHHHhhCCCEEEEeCcCCccccCC--CcccccCHHHHHHHHh
Confidence 34567777653 4456777778888776 34567778889999999987654332211 1112246778888887
Q ss_pred eeEEEEeCCCHHHHHHHHHHHHHHhhccC-CcEEEEEEe
Q 016909 229 VRSIRVDGNDALAIYSAVHAAREMAIGEG-RPILIEALT 266 (380)
Q Consensus 229 ~~~~~VdG~D~~av~~a~~~A~~~ar~~~-gP~lIe~~t 266 (380)
-...++. +++++..++++|+..++.++ ||+.|++-.
T Consensus 135 k~~~~v~--~~~~i~~~l~~A~~~a~~~~~GPV~l~iP~ 171 (590)
T 1ybh_A 135 KHNYLVM--DVEDIPRIIEEAFFLATSGRPGPVLVDVPK 171 (590)
T ss_dssp SEEEECC--CGGGHHHHHHHHHHHHHSSSCCEEEEEEEH
T ss_pred CeEEecC--CHHHHHHHHHHHHHHHhhCCCceEEEEeCc
Confidence 6677776 88899999999998887764 899998855
No 49
>2uz1_A Benzaldehyde lyase; thiamine diphosphate, thiamine pyrophosphate, benzoin, flavoprotein; HET: TPP; 1.65A {Pseudomonas fluorescens} PDB: 2ag1_A* 2ag0_A* 2uz1_B* 3iae_A* 3iaf_A* 3d7k_A*
Probab=94.49 E-value=0.15 Score=52.38 Aligned_cols=109 Identities=19% Similarity=0.110 Sum_probs=76.3
Q ss_pred cHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcceeeecccccCC-cCHHHHHhhc
Q 016909 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRS-DGAVVKGRAY 227 (380)
Q Consensus 149 ~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~i~~~~~~~~~~-~~~~~~a~a~ 227 (380)
.-+|.|.|.+. +.-.+++|..|=|.++ ..-++..|...++|||+|+-+-......... ... .|....++.+
T Consensus 54 a~~A~Gyar~t---g~p~v~~~TsGpG~~N---~~~~l~~A~~~~~Pll~itg~~~~~~~~~~~--~Q~~~d~~~~~~~~ 125 (563)
T 2uz1_A 54 GHAAEGYARAG---AKLGVALVTAGGGFTN---AVTPIANAWLDRTPVLFLTGSGALRDDETNT--LQAGIDQVAMAAPI 125 (563)
T ss_dssp HHHHHHHHHHH---TSCEEEEECTTHHHHT---THHHHHHHHHHTCCEEEEEEECCGGGTTSCC--TTCCCCHHHHHGGG
T ss_pred HHHHHHHHHHh---CCCEEEEEccCccHHH---HHHHHHHHHhcCCCEEEEeCCCCcccCCchh--hhhhccHHHHhhhh
Confidence 34566776653 4445667777878876 3455667888899999998776543222111 122 4677888888
Q ss_pred CeeEEEEeCCCHHHHHHHHHHHHHHhhccC-CcEEEEEEee
Q 016909 228 GVRSIRVDGNDALAIYSAVHAAREMAIGEG-RPILIEALTY 267 (380)
Q Consensus 228 G~~~~~VdG~D~~av~~a~~~A~~~ar~~~-gP~lIe~~t~ 267 (380)
--...++. +++++...+.+|+..+..++ ||+.|++-..
T Consensus 126 tk~~~~v~--~~~~~~~~l~~A~~~a~~~~~GPV~l~iP~d 164 (563)
T 2uz1_A 126 TKWAHRVM--ATEHIPRLVMQAIRAALSAPRGPVLLDLPWD 164 (563)
T ss_dssp CSEEEECC--CGGGHHHHHHHHHHHHHSSSCCCEEEEEEHH
T ss_pred hceEEEcC--CHHHHHHHHHHHHHHhcCCCCceEEEEeCHH
Confidence 77777776 88888899999998888765 9999988654
No 50
>1ozh_A ALS, acetolactate synthase, catabolic; acetohydroxyacid synthase, thiamin diphosphate, lyase; HET: PGE HE3; 2.00A {Klebsiella pneumoniae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1ozg_A* 1ozf_A*
Probab=94.49 E-value=0.13 Score=52.96 Aligned_cols=108 Identities=16% Similarity=0.034 Sum_probs=74.7
Q ss_pred HHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcceeeecccccCCcCHHHHHhhcCe
Q 016909 150 PHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGV 229 (380)
Q Consensus 150 p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~G~ 229 (380)
-+|.|.|.+. +.-.++++..|=|.++ ..-++..|..-++|||+|+-+-..........| ..|....++.+--
T Consensus 62 ~~A~Gyar~t---g~p~v~~~TsGpG~~N---~~~~l~~A~~~~vPll~itg~~~~~~~~~~~~Q--~~d~~~~~~~~tk 133 (566)
T 1ozh_A 62 FMAAAVGRIT---GKAGVALVTSGPGCSN---LITGMATANSEGDPVVALGGAVKRADKAKQVHQ--SMDTVAMFSPVTK 133 (566)
T ss_dssp HHHHHHHHHH---SSCEEEEECSTHHHHT---THHHHHHHHHHTCCEEEEEEECCTTTC--------CCCHHHHHGGGCS
T ss_pred HHHHHHHHHH---CCCEEEEEccChHHHH---HHHHHHHHHhcCCCEEEEeCCCccccCCCCccc--ccCHHHHHHHHhh
Confidence 4566766553 4445667777888886 345677788889999999876554322211111 2467788888877
Q ss_pred eEEEEeCCCHHHHHHHHHHHHHHhhccC-CcEEEEEEee
Q 016909 230 RSIRVDGNDALAIYSAVHAAREMAIGEG-RPILIEALTY 267 (380)
Q Consensus 230 ~~~~VdG~D~~av~~a~~~A~~~ar~~~-gP~lIe~~t~ 267 (380)
...++. +++++...+++|+..+..++ ||+.|++-..
T Consensus 134 ~~~~v~--~~~~~~~~i~~A~~~A~~~r~GPV~l~iP~d 170 (566)
T 1ozh_A 134 YAIEVT--APDALAEVVSNAFRAAEQGRPGSAFVSLPQD 170 (566)
T ss_dssp EEEECC--SGGGHHHHHHHHHHHHHSSSCCEEEEEEEHH
T ss_pred eEEEcC--CHHHHHHHHHHHHHHHhcCCCCeEEEEeChh
Confidence 777776 88888889999988887774 9999988653
No 51
>2pgn_A Cyclohexane-1,2-dione hydrolase (CDH); three alpha/beta domains; HET: P6G FAD TPP; 1.20A {Azoarcus SP} PDB: 2pgo_A*
Probab=94.28 E-value=0.2 Score=51.71 Aligned_cols=107 Identities=18% Similarity=0.128 Sum_probs=74.6
Q ss_pred HHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcceeeec-ccccCCcCHHHHHhhcC
Q 016909 150 PHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPI-SDQFRSDGAVVKGRAYG 228 (380)
Q Consensus 150 p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~i~~~~-~~~~~~~~~~~~a~a~G 228 (380)
-+|.|.|.+. +.-.+++|..|=|+++ ..-++..|..-++|||+|.-+-........ ..| ..|... ++.+-
T Consensus 57 ~~A~GyAr~t---g~p~v~~~TsGpG~~N---~~~gv~~A~~~~vPll~itg~~~~~~~~~~~~~Q--~~d~~~-~~~~t 127 (589)
T 2pgn_A 57 WMVNGYNYVK---DRSAAVGAWHCVGNLL---LHAAMQEARTGRIPAVHIGLNSDGRLAGRSEAAQ--QVPWQS-FTPIA 127 (589)
T ss_dssp HHHHHHHHHH---TSCCEEEEEEGGGGGG---CHHHHHHHHHTTCCEEEEEEESCGGGTTCTTCSS--CCCGGG-GTTTS
T ss_pred HHHHHHHHHH---CCCEEEEEecCchHHH---HHHHHHHHHhcCCCEEEEecCCcccccCCCCccc--ccChhh-ccccE
Confidence 4566776553 4556888889999987 345677788899999999877654322211 111 224555 66666
Q ss_pred eeEEEEeCCCHHHHHHHHHHHHHHhhccC-CcEEEEEEee
Q 016909 229 VRSIRVDGNDALAIYSAVHAAREMAIGEG-RPILIEALTY 267 (380)
Q Consensus 229 ~~~~~VdG~D~~av~~a~~~A~~~ar~~~-gP~lIe~~t~ 267 (380)
-...++. +++++...+.+|+..+..++ ||+.|++-..
T Consensus 128 k~~~~v~--~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~d 165 (589)
T 2pgn_A 128 RSTQRVE--RLDKVGEAIHEAFRVAEGHPAGPAYVDIPFD 165 (589)
T ss_dssp SEEEECC--SGGGHHHHHHHHHHHHTSSSCCEEEEEEETH
T ss_pred EEEeecC--CHHHHHHHHHHHHHHHhcCCCccEEEEeCHh
Confidence 5666665 88888899999998888776 9999988653
No 52
>2vbi_A Pyruvate decarboxylase; thiamine pyrophosphate, lyase, pyruv flavoprotein, THDP-dependent enzyme; HET: TPP; 2.75A {Acetobacter pasteurianus}
Probab=93.80 E-value=0.21 Score=51.29 Aligned_cols=109 Identities=19% Similarity=0.114 Sum_probs=71.3
Q ss_pred cHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcceeeec---cccc---CCcCHHH
Q 016909 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPI---SDQF---RSDGAVV 222 (380)
Q Consensus 149 ~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~i~~~~---~~~~---~~~~~~~ 222 (380)
.-+|.|.|.+. + -.++++..|=|.++ ..-++..|...++|||+|+-+-........ .... ...+...
T Consensus 54 a~~A~Gyar~t---g-~~v~~~TsGpG~~N---~~~gia~A~~~~vPll~itg~~~~~~~~~~~~~~~~~g~~~~~d~~~ 126 (566)
T 2vbi_A 54 GFSAEGYARSN---G-AAAAVVTFSVGAIS---AMNALGGAYAENLPVILISGAPNSNDQGTGHILHHTIGKTDYSYQLE 126 (566)
T ss_dssp HHHHHHHHHHH---S-CEEEEECTTTTHHH---HHHHHHHHHHTTCCEEEEEEECCGGGTTTTCBCTTSCSSSCCTHHHH
T ss_pred HHHHHHHHhhc---C-CeEEEEeCCCCHHH---HHHHHHHHHhhCCCEEEEECCCChHHhccCceeeeeccCcchHHHHH
Confidence 34566776653 4 45566666777775 445666788899999999876554321110 0000 1125677
Q ss_pred HHhhcCeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEe
Q 016909 223 KGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALT 266 (380)
Q Consensus 223 ~a~a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t 266 (380)
.++.+--....+. +++++...+.+|+..+..+.||+.|++-.
T Consensus 127 ~~~~~tk~~~~v~--~~~~~~~~l~~A~~~a~~~~GPV~l~iP~ 168 (566)
T 2vbi_A 127 MARQVTCAAESIT--DAHSAPAKIDHVIRTALRERKPAYLDIAC 168 (566)
T ss_dssp HHHTTCSEEEEEC--SSSSHHHHHHHHHHHHHHHTCCEEEEEET
T ss_pred HHhhhEeEEEEeC--CHHHHHHHHHHHHHHHHhCCCCEEEEech
Confidence 8888877777786 56666677777777777778999999865
No 53
>2wvg_A PDC, pyruvate decarboxylase; thiamine diphosphate, lyase, flavoprotein, metal-binding, alcohol fermentation; HET: TPU; 1.75A {Zymomonas mobilis} PDB: 2wva_A* 2wvh_A 3oe1_A* 1zpd_A*
Probab=93.74 E-value=0.25 Score=50.74 Aligned_cols=110 Identities=16% Similarity=0.089 Sum_probs=74.2
Q ss_pred cHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcceeeec---cccc---CCcCHHH
Q 016909 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPI---SDQF---RSDGAVV 222 (380)
Q Consensus 149 ~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~i~~~~---~~~~---~~~~~~~ 222 (380)
.-+|.|.|.+. + ..++++..|=|+++ ..-++..|...++|||+|+-+-........ .... ...+...
T Consensus 54 a~~A~Gyar~t---g-~~v~~~TsGpG~~N---~~~gia~A~~~~vPll~itg~~~~~~~~~~~~~~~~~g~~~~~d~~~ 126 (568)
T 2wvg_A 54 GFSAEGYARAK---G-AAAAVVTYSVGALS---AFDAIGGAYAENLPVILISGAPNNNDHAAGHVLHHALGKTDYHYQLE 126 (568)
T ss_dssp HHHHHHHHHHH---S-CEEEEECTTTTHHH---HHHHHHHHHHTTCCEEEEEEECCGGGTTTTCBCTTSCSSSCCCHHHH
T ss_pred HHHHHHHHHhh---C-CeEEEEeCCCCHHH---HHHHHHHHhhhCCCEEEEeCCCChhHhccCcceeeeccccchHHHHH
Confidence 34566777653 4 45667777777775 445677788899999999876654321110 0000 1125677
Q ss_pred HHhhcCeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEee
Q 016909 223 KGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTY 267 (380)
Q Consensus 223 ~a~a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~ 267 (380)
.++.+--...++. +++++...+.+|+..+..+.||+.|++-..
T Consensus 127 ~~~~~tk~~~~v~--~~~~~~~~l~~A~~~A~~~~GPV~l~iP~d 169 (568)
T 2wvg_A 127 MAKNITAAAEAIY--TPEEAPAKIDHVIKTALREKKPVYLEIACN 169 (568)
T ss_dssp HHTTSCSCEEEEC--SGGGHHHHHHHHHHHHHHHTCCEEEEEEGG
T ss_pred HHHhhEeEEEEeC--CHHHHHHHHHHHHHHHHhCCCCEEEEechh
Confidence 8888877778886 777788888888877777789999998653
No 54
>3eya_A Pyruvate dehydrogenase [cytochrome]; pyruvate oxidase, membrane-associated flavoprotein dehydrogenase, interactions with lipids cell membrane; HET: TDP FAD; 2.50A {Escherichia coli} PDB: 3ey9_A*
Probab=93.64 E-value=0.2 Score=51.21 Aligned_cols=107 Identities=14% Similarity=-0.036 Sum_probs=73.4
Q ss_pred HHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcceeeecccccCCcCHHHHHhhcCe
Q 016909 150 PHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGV 229 (380)
Q Consensus 150 p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~G~ 229 (380)
-+|.|.|.+. +.-.+++|..|=|+++ ..-++..|..-++|||+|.-+-....... ......+..+.++.+--
T Consensus 55 ~~A~GyAr~t---g~~~v~~~TsGpG~~N---~~~gi~~A~~~~vPvl~itg~~~~~~~~~--~~~Q~~d~~~~~~~~tk 126 (549)
T 3eya_A 55 FAAGAEAQLS---GELAVCAGSCGPGNLH---LINGLFDCHRNHVPVLAIAAHIPSSEIGS--GYFQETHPQELFRECSH 126 (549)
T ss_dssp HHHHHHHHHH---SSCEEEEECTTHHHHT---THHHHHHHHHTTCCEEEEEEESCGGGTTS--CCTTCCCHHHHTSTTCS
T ss_pred HHHHHHHHHh---CCCEEEEeCCCCcHhh---hHHHHHHHHhhCCCEEEEeCCCchhhcCC--CCCCccCHHHHHhhhhh
Confidence 3566776653 4456677778888887 34567778889999999986543221111 11112356777777766
Q ss_pred eEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEe
Q 016909 230 RSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALT 266 (380)
Q Consensus 230 ~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t 266 (380)
....+. +++++...+.+|+..+....||+.|++-.
T Consensus 127 ~~~~v~--~~~~~~~~i~~A~~~A~~~~GPV~l~iP~ 161 (549)
T 3eya_A 127 YCELVS--SPEQIPQVLAIAMRKAVLNRGVSVVVLPG 161 (549)
T ss_dssp EEEECC--SGGGHHHHHHHHHHHHHHTTSEEEEEEEH
T ss_pred eEEEeC--CHHHHHHHHHHHHHHHhhCCCCEEEEeCh
Confidence 666776 77788888888888887788999998754
No 55
>1t9b_A Acetolactate synthase, mitochondrial; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: 1CS P25 FAD NSP P22 YF3; 2.20A {Saccharomyces cerevisiae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1n0h_A* 1t9a_A* 1t9c_A* 1t9d_A* 1jsc_A*
Probab=93.60 E-value=0.21 Score=52.61 Aligned_cols=107 Identities=18% Similarity=0.159 Sum_probs=75.1
Q ss_pred cHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcceeeecccccCCcCHHHHHhhcC
Q 016909 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 228 (380)
Q Consensus 149 ~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~G 228 (380)
.-+|.|.|.+. +.-.+++|..|=|+++ ..-++..|..-++|||+|+-+-....... ..+...|....++.+-
T Consensus 133 a~aAdGyAr~t---Gkpgvv~~TsGpG~~N---~~~gia~A~~d~vPllvItG~~~~~~~g~--~a~Q~~Dq~~i~~~~t 204 (677)
T 1t9b_A 133 GHMAEGYARAS---GKPGVVLVTSGPGATN---VVTPMADAFADGIPMVVFTGQVPTSAIGT--DAFQEADVVGISRSCT 204 (677)
T ss_dssp HHHHHHHHHHH---SSCEEEEECSTHHHHT---THHHHHHHHHHTCCEEEEEEECCTTTTTS--CCTTCCCHHHHTGGGS
T ss_pred HHHHHHHHHHH---CCCEEEEECCChHHHH---HHHHHHHHHHcCCCEEEEeCCCChhhcCC--CCccccCHHHHhhhhe
Confidence 34577777653 4556777888888886 34557778888999999987654322111 1111235667777776
Q ss_pred eeEEEEeCCCHHHHHHHHHHHHHHhhcc-CCcEEEEEE
Q 016909 229 VRSIRVDGNDALAIYSAVHAAREMAIGE-GRPILIEAL 265 (380)
Q Consensus 229 ~~~~~VdG~D~~av~~a~~~A~~~ar~~-~gP~lIe~~ 265 (380)
-....|. +++++...+.+|+..++.+ .||+.|++-
T Consensus 205 k~~~~v~--~~~~i~~~i~~A~~~A~~grpGPV~l~lP 240 (677)
T 1t9b_A 205 KWNVMVK--SVEELPLRINEAFEIATSGRPGPVLVDLP 240 (677)
T ss_dssp SEEEECC--SGGGHHHHHHHHHHHHHSSSCCEEEEEEE
T ss_pred eEEEEcC--CHHHHHHHHHHHHHHHhhCCCceEEEEcC
Confidence 6677776 8889999999999888876 589999987
No 56
>2q28_A Oxalyl-COA decarboxylase; lyase, oxalate degradation, thiami diphosphate, lyase; HET: TPP ADP MES; 1.74A {Escherichia coli} PDB: 2q27_A* 2q29_A*
Probab=93.50 E-value=0.19 Score=51.43 Aligned_cols=109 Identities=16% Similarity=0.180 Sum_probs=73.8
Q ss_pred HHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcceeeecccccCCcCHHHHHhhcCe
Q 016909 150 PHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGV 229 (380)
Q Consensus 150 p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~G~ 229 (380)
-+|.|.|.+. +.-.+++|..|=|+++ ..-++..|..-++|||+|.-+-...............|....++.+--
T Consensus 59 ~~A~Gyar~t---g~pgv~~~TsGpG~~N---~~~gi~~A~~~~vPll~itg~~~~~~~~~~~~~~Q~~dq~~~~~~~tk 132 (564)
T 2q28_A 59 YAAAASGFLT---QKPGICLTVSAPGFLN---GLTALANATVNGFPMIMISGSSDRAIVDLQQGDYEELDQMNAAKPYAK 132 (564)
T ss_dssp HHHHHHHHHH---SSCEEEEECSHHHHHH---HHHHHHHHHHHTCCEEEEEEECCHHHHHTTSCCTTCCCHHHHHGGGSS
T ss_pred HHHHHHHHHh---CCCEEEEEccCchHHH---HHHHHHHHHhcCCCEEEEeCCCCccccCCCCCccccccHHHHHHHhhh
Confidence 3566776653 4445677777777775 455677788889999999876554321100011112366778888877
Q ss_pred eEEEEeCCCHHHHHHHHHHHHHHhhc-cCCcEEEEEEe
Q 016909 230 RSIRVDGNDALAIYSAVHAAREMAIG-EGRPILIEALT 266 (380)
Q Consensus 230 ~~~~VdG~D~~av~~a~~~A~~~ar~-~~gP~lIe~~t 266 (380)
...++. +++++...+.+|+..+.. ..||+.|++-.
T Consensus 133 ~~~~v~--~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~ 168 (564)
T 2q28_A 133 AAFRVN--QPQDLGIALARAIRVSVSGRPGGVYLDLPA 168 (564)
T ss_dssp EEEECC--SGGGHHHHHHHHHHHHHSSSCCEEEEEEEH
T ss_pred eeeecC--CHHHHHHHHHHHHHHHhcCCCceEEEEcCH
Confidence 777776 777888888888888877 45999998754
No 57
>2nxw_A Phenyl-3-pyruvate decarboxylase; thiamine pyrophosphate, asymmetric dimer of dimers, open ACT loops, lyase; HET: TPP; 1.50A {Azospirillum brasilense} PDB: 2q5j_A* 2q5l_A* 2q5o_A* 2q5q_A*
Probab=93.47 E-value=0.2 Score=51.37 Aligned_cols=110 Identities=19% Similarity=0.134 Sum_probs=69.2
Q ss_pred HHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcceeeecc---cccCCcC-HHHHHh
Q 016909 150 PHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPIS---DQFRSDG-AVVKGR 225 (380)
Q Consensus 150 p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~i~~~~~---~~~~~~~-~~~~a~ 225 (380)
-+|.|.|.+. +.-.+++|..|=|+++ ..-++..|..-++|||+|+-+-......... .+....+ ....++
T Consensus 73 ~~A~GyAr~t---gkp~v~~~TsGpG~~N---~~~gv~~A~~~~vPll~itg~~~~~~~~~~~~~~~~~q~~d~q~~~~~ 146 (565)
T 2nxw_A 73 FAADAAARYS---STLGVAAVTYGAGAFN---MVNAVAGAYAEKSPVVVISGAPGTTEGNAGLLLHHQGRTLDTQFQVFK 146 (565)
T ss_dssp HHHHHHHHHH---TSCEEEEECTTHHHHT---THHHHHHHHHTTCCEEEEEEECCTTCC--CCCC-------CHHHHHHT
T ss_pred HHHHHHHHHh---CCCeEEEECCCCCHHH---HHHHHHHHHhhCCCEEEEeCCCChhhhccCcceeeeccchhhHHHHHH
Confidence 3567776653 4445666777888776 3456777888999999998764332211100 0001122 556777
Q ss_pred hcCeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEee
Q 016909 226 AYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTY 267 (380)
Q Consensus 226 a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~ 267 (380)
.+--...++. +++++...+.+|+..+..+.||+.|++-..
T Consensus 147 ~~~k~~~~v~--~~~~~~~~i~~A~~~A~~~~GPV~l~iP~D 186 (565)
T 2nxw_A 147 EITVAQARLD--DPAKAPAEIARVLGAARAQSRPVYLEIPRN 186 (565)
T ss_dssp TSCSCEEECC--CTTTHHHHHHHHHHHHHHHTCCEEEEEEGG
T ss_pred hhheEEEEeC--CHHHHHHHHHHHHHHHHhCCCCEEEECChh
Confidence 7766667775 666667777777776666689999998743
No 58
>1yd7_A 2-keto acid:ferredoxin oxidoreductase subunit alpha; structural genomics, southeast collaboratory for structural genomics, secsg; 2.30A {Pyrococcus furiosus}
Probab=93.18 E-value=0.09 Score=51.79 Aligned_cols=113 Identities=14% Similarity=0.163 Sum_probs=63.5
Q ss_pred ccHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcceee-ecccccCCcCHHHHHhh
Q 016909 148 QLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAIST-PISDQFRSDGAVVKGRA 226 (380)
Q Consensus 148 ~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~i~~-~~~~~~~~~~~~~~a~a 226 (380)
.+.+|+|+|++ ..+.++...|.|-.. ..+.|..++..++|+|+++-+....... +.....+ +.+..++..
T Consensus 76 a~~~a~Gaa~a-----G~r~~~~ts~~G~~~---~~d~l~~aa~~~~P~Vi~~~~~~~~~~g~~~~~~~s-d~~~~~~~~ 146 (395)
T 1yd7_A 76 SIAAAIGASWA-----GAKAMTATSGPGFSL---MQENIGYAVMTETPVVIVDVQRSGPSTGQPTLPAQG-DIMQAIWGT 146 (395)
T ss_dssp HHHHHHHHHHT-----TCCEEEEEETTHHHH---HTTTCC----CCCCEEEEEEC-------------------------
T ss_pred HHHHHHHHHHh-----CCcEEEEeCchHHHH---HHHHHHHHHhcCCCEEEEEeeCCCCCCCCCcccchh-HHHHHHhcc
Confidence 35667777776 234667777887653 3455666778889999988765533211 1111110 111223222
Q ss_pred ---cCeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCCCCC
Q 016909 227 ---YGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHT 273 (380)
Q Consensus 227 ---~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R~~gHs 273 (380)
+|++++... ++.+.+..+..|++.+++.+.|+++....+ . +|+
T Consensus 147 ~g~~g~~vl~p~--~~qea~~l~~~A~~lA~~~~~PVi~~~~~~-l-~h~ 192 (395)
T 1yd7_A 147 HGDHSLIVLSPS--TVQEAFDFTIRAFNLSEKYRTPVILLTDAE-V-GHM 192 (395)
T ss_dssp --CCCCEEECCC--SHHHHHHHHHHHHHHHHHHTSEEEEEECHH-H-HHC
T ss_pred CCCcceEEEeCC--CHHHHHHHHHHHHHHHHHHCCCEEEEcchh-H-hCe
Confidence 467777665 999999999999988887889999987764 2 454
No 59
>2c31_A Oxalyl-COA decarboxylase; oxalate, thiamin diphosphate, flavoprotein, lyase, thiamine pyrophosphate; HET: TZD ADP; 1.73A {Oxalobacter formigenes} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2ji6_A* 2ji7_A* 2ji8_A* 2ji9_A* 2jib_A*
Probab=93.11 E-value=0.21 Score=51.24 Aligned_cols=109 Identities=15% Similarity=0.108 Sum_probs=73.2
Q ss_pred HHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcceeeecccccCCcCHHHHHhhcCe
Q 016909 150 PHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGV 229 (380)
Q Consensus 150 p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~G~ 229 (380)
-+|.|.|.+. +...+++|..|=|+++ ..-++..|..-++|||+|.-+-...............|....++.+--
T Consensus 61 ~~A~GyAr~t---g~pgv~~~TsGpG~~N---~~~~i~~A~~~~vPll~itg~~~~~~~~~~~~~~Q~~dq~~~~~~~tk 134 (568)
T 2c31_A 61 YAASIAGYIE---GKPGVCLTVSAPGFLN---GVTSLAHATTNCFPMILLSGSSEREIVDLQQGDYEEMDQMNVARPHCK 134 (568)
T ss_dssp HHHHHHHHHH---SSCEEEEECSHHHHHH---HHHHHHHHHHHTCCEEEEEEECCHHHHHTTCCCTTCCCHHHHSGGGSS
T ss_pred HHHHHHHHHh---CCCEEEEEcCCccHHH---HHHHHHHHHhcCCCEEEEccCCCccccCCCCCcccccCHHHHHHhhhh
Confidence 3566766553 4445677777777775 456677788899999999876543322100011112356677777766
Q ss_pred eEEEEeCCCHHHHHHHHHHHHHHhhc-cCCcEEEEEEe
Q 016909 230 RSIRVDGNDALAIYSAVHAAREMAIG-EGRPILIEALT 266 (380)
Q Consensus 230 ~~~~VdG~D~~av~~a~~~A~~~ar~-~~gP~lIe~~t 266 (380)
....+. +++.+...+.+|+..+.. ..||+.|++-.
T Consensus 135 ~~~~v~--~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~ 170 (568)
T 2c31_A 135 ASFRIN--SIKDIPIGIARAVRTAVSGRPGGVYVDLPA 170 (568)
T ss_dssp EEEECC--SGGGHHHHHHHHHHHHHSSSCCEEEEEEET
T ss_pred eeeecC--CHHHHHHHHHHHHHHhcCCCCceEEEeCCH
Confidence 677776 778888888899888877 45999998754
No 60
>1v5e_A Pyruvate oxidase; oxidoreductase, flavoprotein; HET: FAD; 1.60A {Aerococcus viridans} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2dji_A* 1v5f_A* 1v5g_A*
Probab=92.98 E-value=0.19 Score=51.86 Aligned_cols=107 Identities=20% Similarity=0.060 Sum_probs=72.3
Q ss_pred cHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcceeeecccccCCcCHHHHHhhcC
Q 016909 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 228 (380)
Q Consensus 149 ~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~G 228 (380)
.-+|.|.|.+ .+.-.++++..|=|.++ ..-++..|...++|||+|+-+-......... ....|....++.+-
T Consensus 56 a~~A~GyAr~---tgk~~v~~~tsGpG~~N---~~~gl~~A~~~~vPll~Itg~~p~~~~g~~~--~Q~~d~~~~~~~~t 127 (590)
T 1v5e_A 56 AMAAVMQSKF---GGNLGVTVGSGGPGASH---LINGLYDAAMDNIPVVAILGSRPQRELNMDA--FQELNQNPMYDHIA 127 (590)
T ss_dssp HHHHHHHHHT---TCCCCEEEECTTHHHHT---THHHHHHHHHHTCCEEEEEEECCGGGTTTTC--TTCCCCHHHHHTTC
T ss_pred HHHHHHHHHH---HCCCEEEEeCcChHHHH---HHHHHHHHHhcCCCEEEEcCCCCcccCCCCc--ccccCHHHHHHhhc
Confidence 3456666654 24445667777888776 3455667888899999998776543221111 11235667777776
Q ss_pred eeEEEEeCCCHHHHHHHHHHHHHHhhccC-CcEEEEEEe
Q 016909 229 VRSIRVDGNDALAIYSAVHAAREMAIGEG-RPILIEALT 266 (380)
Q Consensus 229 ~~~~~VdG~D~~av~~a~~~A~~~ar~~~-gP~lIe~~t 266 (380)
-....+. +++++...+++|+..+..++ ||+.| +-.
T Consensus 128 k~~~~v~--~~~~~~~~i~~A~~~A~~~~~GPV~l-iP~ 163 (590)
T 1v5e_A 128 VYNRRVA--YAEQLPKLVDEAARMAIAKRGVAVLE-VPG 163 (590)
T ss_dssp SEEEECC--SGGGHHHHHHHHHHHHHHTTSEEEEE-EET
T ss_pred cEEEEeC--CHHHHHHHHHHHHHHHhcCCCceEEE-Ecc
Confidence 6677776 88888889999998888777 89999 643
No 61
>3kom_A Transketolase; rossmann fold, csgid, transferase, structural genomics, center for structural genomics of infectious DISE; HET: MSE; 1.60A {Francisella tularensis subsp}
Probab=92.91 E-value=0.41 Score=50.34 Aligned_cols=102 Identities=13% Similarity=0.041 Sum_probs=67.8
Q ss_pred ccHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcce--eeecccccCCcCHHHHHh
Q 016909 148 QLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAI--STPISDQFRSDGAVVKGR 225 (380)
Q Consensus 148 ~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~i--~~~~~~~~~~~~~~~~a~ 225 (380)
.+++|+|+|+. +.-++++.++.+-.. ..++.+.+++..++||+++....+++. +++++ .+..+++-...
T Consensus 415 ~v~~a~GlA~~----gG~~P~~~tf~~F~~---~~~~~ir~~a~~~lpvv~~~t~~g~g~G~dG~TH--q~~ed~a~lr~ 485 (663)
T 3kom_A 415 MAAIMNGLSLY----GGIKPYGGTFLVFSD---YSRNAIRMSALMKQPVVHVMSHDSIGLGEDGPTH--QPIEHVPSLRL 485 (663)
T ss_dssp HHHHHHHHHHH----SSCEEEEEEEGGGHH---HHHHHHHHHHHTTCCCEEEEECCSGGGCTTCTTT--CCSSHHHHHHT
T ss_pred HHHHHHHHHHc----CCCEEEEEehHHHHH---HHHHHHHHHHhcCCCEEEEEeCCccccCCCCCCc--CCHHHHHHHhc
Confidence 45667788765 233556666655442 245778888999999999987777653 34444 23344444443
Q ss_pred hcCeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEE
Q 016909 226 AYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIE 263 (380)
Q Consensus 226 a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe 263 (380)
--|+.++.-. |+.+...+++.|++. .++|++|-
T Consensus 486 iPnl~V~~Pa--d~~e~~~~l~~A~~~---~~~Pv~ir 518 (663)
T 3kom_A 486 IPNLSVWRPA--DTIETMIAWKEAVKS---KDTPSVMV 518 (663)
T ss_dssp STTCEEECCC--SHHHHHHHHHHHHHC---SSCCEEEE
T ss_pred CCCcEEEeeC--CHHHHHHHHHHHHHh---CCCCEEEE
Confidence 3477666544 899999999998862 47999884
No 62
>4feg_A Pyruvate oxidase; carbanion, structure activity relationship, oxidation-reduct umpolung, thiamine diphosphate, reaction intermediate; HET: TDM FAD GOL; 1.09A {Lactobacillus plantarum} PDB: 4fee_A* 1y9d_A* 2ez9_A* 2ez4_A* 2ez8_A* 2ezt_A* 2ezu_A* 1pow_A* 1pox_A*
Probab=92.53 E-value=0.21 Score=51.78 Aligned_cols=107 Identities=15% Similarity=0.063 Sum_probs=68.1
Q ss_pred HHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcceeeecccccCCcCHHHHHhhcCe
Q 016909 150 PHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGV 229 (380)
Q Consensus 150 p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~G~ 229 (380)
-+|.|.|.+. +.-.++++..|=|+++ ..-++..|..-++|||+|+-.-....... ......|....++.+--
T Consensus 64 ~aA~GyAr~t---g~~gv~~~TsGpG~~N---~~~gia~A~~~~vPvl~itG~~~~~~~~~--~~~Q~~d~~~~~~~~tk 135 (603)
T 4feg_A 64 MAAAADAKLT---GKIGVCFGSAGPGGTH---LMNGLYDAREDHVPVLALIGQFGTTGMNM--DTFQEMNENPIYADVAD 135 (603)
T ss_dssp HHHHHHHHHH---SSCEEEEECTTHHHHT---THHHHHHHHHTTCCEEEEEEECCTTTTTS--CCTTCCCCGGGGTTTCS
T ss_pred HHHHHHHHHh---CCceEEEecCCchHHH---HHHHHHHHHHcCCCEEEEecCCcccccCC--CccccccHHHHhhhhce
Confidence 4566766553 4455677777888887 34567778889999999986533221110 01111244566666665
Q ss_pred eEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEe
Q 016909 230 RSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALT 266 (380)
Q Consensus 230 ~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t 266 (380)
...++. +++++...+.+|+..+....||+.|++-.
T Consensus 136 ~~~~v~--~~~~~~~~i~~A~~~A~~~~GPV~l~iP~ 170 (603)
T 4feg_A 136 YNVTAV--NAATLPHVIDEAIRRAYAHQGVAVVQIPV 170 (603)
T ss_dssp EEEECC--CSTTHHHHHHHHHHHHHHHTSEEEEEEET
T ss_pred EEEEcC--CHHHHHHHHHHHHHHHhcCCCCEEEEeCh
Confidence 666665 66667777777776666678999998753
No 63
>2o1s_A 1-deoxy-D-xylulose-5-phosphate synthase; DXS, thiamine, isoprenoid, transferase; HET: TDP; 2.40A {Escherichia coli}
Probab=92.48 E-value=0.24 Score=51.55 Aligned_cols=103 Identities=12% Similarity=0.051 Sum_probs=68.1
Q ss_pred ccHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcce-eeecccccCCcCHHHHHhh
Q 016909 148 QLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAI-STPISDQFRSDGAVVKGRA 226 (380)
Q Consensus 148 ~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~i-~~~~~~~~~~~~~~~~a~a 226 (380)
.+++|.|+|++ | -++++.++++... =.+-+.++.++..++|+++++.+.++.. .++++.+ ..+++-...-
T Consensus 373 ~~~~a~G~A~~----G-~rp~~~~~~~F~~--~a~dqi~~~~a~~~~pvv~~~~~~g~~g~~G~tH~~--~~d~~~~~~i 443 (621)
T 2o1s_A 373 AVTFAAGLAIG----G-YKPIVAIYSTFLQ--RAYDQVLHDVAIQKLPVLFAIDRAGIVGADGQTHQG--AFDLSYLRCI 443 (621)
T ss_dssp HHHHHHHHHHT----T-CEEEEEEETTGGG--GGHHHHHHTTTTTTCCCEEEEESCBCCCTTCGGGCB--CSHHHHTTTS
T ss_pred HHHHHHHHHHC----C-CEEEEEehHhHHH--HHHHHHHHHHHhcCCCEEEEEECCccCCCCCCccCc--hHHHHHHhcC
Confidence 35567777764 2 4567777877642 2333456778899999999998877632 3343332 2333333333
Q ss_pred cCeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEE
Q 016909 227 YGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEA 264 (380)
Q Consensus 227 ~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~ 264 (380)
-||.++.-. |+.+.+..++.|++. .++|++|-.
T Consensus 444 P~l~v~~P~--d~~e~~~~l~~a~~~---~~~Pv~i~~ 476 (621)
T 2o1s_A 444 PEMVIMTPS--DENECRQMLYTGYHY---NDGPSAVRY 476 (621)
T ss_dssp TTCEEECCS--SHHHHHHHHHHHHHC---CSSCEEEEC
T ss_pred CCCEEEecC--CHHHHHHHHHHHHHc---CCCCEEEEe
Confidence 388877655 999999999999864 378998854
No 64
>3mos_A Transketolase, TK; thiamin diphosphate TPP THDP enzyme catalysis sugar metaboli transferase; HET: TPP; 1.75A {Homo sapiens} PDB: 3ooy_A*
Probab=92.27 E-value=0.54 Score=48.92 Aligned_cols=100 Identities=17% Similarity=0.135 Sum_probs=65.7
Q ss_pred cHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcce--eeecccccCCcCHHHHHhh
Q 016909 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAI--STPISDQFRSDGAVVKGRA 226 (380)
Q Consensus 149 ~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~i--~~~~~~~~~~~~~~~~a~a 226 (380)
+++|+|+|++ |...++++.++++.. ..++.+.+++..++|+++++.+-+++. +++++ .+..+++-...-
T Consensus 368 v~~a~G~A~~----G~~~~~~~~f~~Fl~---~a~dqi~~~a~~~~~v~~v~~~~g~~~G~dG~tH--~~~ed~a~l~~i 438 (616)
T 3mos_A 368 VSIAVGCATR----NRTVPFCSTFAAFFT---RAFDQIRMAAISESNINLCGSHCGVSIGEDGPSQ--MALEDLAMFRSV 438 (616)
T ss_dssp HHHHHHHHGG----GCCEEEEEEEGGGGG---GGHHHHHHHHHTTCCEEEEEESBSGGGCTTCGGG--CBSSHHHHHHTS
T ss_pred HHHHHHHHHc----CCCCEEEEehHHHHH---HHHHHHHHHHHhCCCeEEEEECCCccccCCCCcc--cCHHHHHHhcCC
Confidence 3455555554 433466778988874 456778888899999999988777643 33433 234444444433
Q ss_pred cCeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEE
Q 016909 227 YGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIE 263 (380)
Q Consensus 227 ~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe 263 (380)
-|+.++.- .|+.++..+++.|++ .++|++|-
T Consensus 439 P~l~V~~P--~d~~e~~~~l~~a~~----~~gp~~ir 469 (616)
T 3mos_A 439 PTSTVFYP--SDGVATEKAVELAAN----TKGICFIR 469 (616)
T ss_dssp TTEEEECC--CSHHHHHHHHHHHHT----CCSEEEEE
T ss_pred CCCEEEec--CCHHHHHHHHHHHHh----cCCCEEEE
Confidence 36666554 489999998888875 36898773
No 65
>3l84_A Transketolase; TKT, structural genomics, center for structur genomics of infectious diseases, csgid, transferase; HET: MSE; 1.36A {Campylobacter jejuni} PDB: 3m6l_A* 3m34_A* 3m7i_A*
Probab=92.22 E-value=0.5 Score=49.36 Aligned_cols=101 Identities=13% Similarity=-0.021 Sum_probs=67.5
Q ss_pred ccHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcce--eeecccccCCcCHHHHHh
Q 016909 148 QLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAI--STPISDQFRSDGAVVKGR 225 (380)
Q Consensus 148 ~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~i--~~~~~~~~~~~~~~~~a~ 225 (380)
.+++|.|+|+. +.-++++.++..-+ + ..++.+.+++..++||+|+....+++. +++++ .+..+++-...
T Consensus 394 ~v~~a~GlA~~----gG~~P~~~~f~~F~--~-~~~~~ir~~a~~~~pv~~~~t~~g~g~G~dG~TH--q~~ed~a~lr~ 464 (632)
T 3l84_A 394 MAAINNAFARY----GIFLPFSATFFIFS--E-YLKPAARIAALMKIKHFFIFTHDSIGVGEDGPTH--QPIEQLSTFRA 464 (632)
T ss_dssp HHHHHHHHHHH----SSCEEEEEEEGGGH--H-HHHHHHHHHHHHTCCCEEEEECCSGGGCTTCGGG--SCSSHHHHHHH
T ss_pred HHHHHHHHHHc----CCCEEEEEecHHHH--H-HHHHHHHHHhccCCCEEEEEECCCcCCCCCCCCC--CCHhHHHHHhc
Confidence 35667777765 23345666554333 2 345778888999999999998777653 45544 23445544444
Q ss_pred hcCeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEE
Q 016909 226 AYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIE 263 (380)
Q Consensus 226 a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe 263 (380)
--|+.++.-- |+.+...+++.|++ .++|++|-
T Consensus 465 iP~l~V~~P~--d~~e~~~~l~~A~~----~~~Pv~ir 496 (632)
T 3l84_A 465 MPNFLTFRPA--DGVENVKAWQIALN----ADIPSAFV 496 (632)
T ss_dssp SSSCEEECCS--SHHHHHHHHHHHHH----CSSCEEEE
T ss_pred CCCCEEEecC--CHHHHHHHHHHHHh----CCCCEEEE
Confidence 4477777644 89999999999986 47999884
No 66
>2pan_A Glyoxylate carboligase; thiamin-diphosphate (THDP), thimain-dependent enzymes, FAD, lyase; HET: FAD TDP 1PE; 2.70A {Escherichia coli}
Probab=92.22 E-value=0.57 Score=48.52 Aligned_cols=108 Identities=16% Similarity=0.149 Sum_probs=73.4
Q ss_pred HHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcceeeecccccCCcCHHHHHhhcCe
Q 016909 150 PHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGV 229 (380)
Q Consensus 150 p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~G~ 229 (380)
-+|.|.|.+.. ++-.++++..|=|+++ ..-++..|..-++|||+|+-+-........ .....|....++.+--
T Consensus 79 ~~A~GyAr~tg--g~~~v~~~TsGpG~~N---~~~~l~~A~~~~vPlvvItg~~p~~~~~~~--~~Q~~d~~~~~~~~tk 151 (616)
T 2pan_A 79 HMAEGYTRATA--GNIGVCLGTSGPAGTD---MITALYSASADSIPILCITGQAPRARLHKE--DFQAVDIEAIAKPVSK 151 (616)
T ss_dssp HHHHHHHHHST--TCCEEEEECSTHHHHT---SHHHHHHHHHTTCCEEEEEEECCGGGTTTT--CTTCCCHHHHHGGGSS
T ss_pred HHHHHHHHhcC--CCceEEEeCCCchHHH---HHHHHHHHHhcCCCEEEEecCCcccccCcc--cccccCHHHHHHHHHH
Confidence 45667766520 2334556677888776 245677788889999999876554322111 1123467788888876
Q ss_pred eEEEEeCCCHHHHHHHHHHHHHHhhcc-CCcEEEEEEe
Q 016909 230 RSIRVDGNDALAIYSAVHAAREMAIGE-GRPILIEALT 266 (380)
Q Consensus 230 ~~~~VdG~D~~av~~a~~~A~~~ar~~-~gP~lIe~~t 266 (380)
....+. ++.++...+++|+..++.+ .||+.|++-.
T Consensus 152 ~~~~v~--~~~~i~~~l~~A~~~A~~~r~GPV~l~iP~ 187 (616)
T 2pan_A 152 MAVTVR--EAALVPRVLQQAFHLMRSGRPGPVLVDLPF 187 (616)
T ss_dssp EEEECC--SGGGHHHHHHHHHHHHHSSSCCCEEEEEEH
T ss_pred hhcccC--CHHHHHHHHHHHHHHHhcCCCceEEEEcch
Confidence 677775 7888999999999888776 4899998854
No 67
>3m49_A Transketolase; alpha-beta-alpha sandwich, csgid, transferase, structural genomics, center for structural genomics of infectious diseases; HET: MSE TDP PG5 TRS BTB; 2.00A {Bacillus anthracis} PDB: 3hyl_A*
Probab=91.84 E-value=0.66 Score=48.98 Aligned_cols=102 Identities=17% Similarity=0.099 Sum_probs=65.0
Q ss_pred ccHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcc--eeeecccccCCcCHHHHHh
Q 016909 148 QLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWA--ISTPISDQFRSDGAVVKGR 225 (380)
Q Consensus 148 ~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~--i~~~~~~~~~~~~~~~~a~ 225 (380)
.+++|.|+|+. +.-++++..+.--+. ...-++.+++..++||+|++...+++ .+++++. +..+++-...
T Consensus 439 mv~~A~GlA~~----gG~~P~~~tf~~Fs~---f~~~air~~al~~lpVv~v~~~~gigvG~dG~THq--~ied~a~lr~ 509 (690)
T 3m49_A 439 MGAAMNGIALH----GGLKTYGGTFFVFSD---YLRPAIRLAALMQLPVTYVFTHDSIAVGEDGPTHE--PIEQLAALRA 509 (690)
T ss_dssp HHHHHHHHHHH----SSCEEEEEEEGGGGG---GGHHHHHHHHHHTCCCEEEEECCSGGGCTTCGGGC--CSSHHHHHHT
T ss_pred HHHHHHHHHHc----CCCEEEEEecHHHHH---HHHHHHHHHHhcCCCcEEEEECCCcCCCCCCCccC--CHHHHHHHhc
Confidence 35667787775 223344444422221 12345777899999999999988864 3455543 3445544443
Q ss_pred hcCeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEE
Q 016909 226 AYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIE 263 (380)
Q Consensus 226 a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe 263 (380)
--|+.++.-- |..+...+++.|++. .++|++|-
T Consensus 510 iPnl~V~~Pa--d~~E~~~~l~~Ai~~---~~~Pv~ir 542 (690)
T 3m49_A 510 MPNVSVIRPA--DGNESVAAWRLALES---TNKPTALV 542 (690)
T ss_dssp STTCEEECCS--SHHHHHHHHHHHHHC---SSSCEEEE
T ss_pred CCCCEEEeeC--CHHHHHHHHHHHHHc---CCCCEEEE
Confidence 3477766544 899999999999863 46899884
No 68
>2e6k_A Transketolase; structural genomics, NPPSFA, national project protein structural and functional analyses; 2.09A {Thermus thermophilus}
Probab=91.73 E-value=0.63 Score=48.75 Aligned_cols=102 Identities=15% Similarity=0.085 Sum_probs=67.9
Q ss_pred cHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcce--eeecccccCCcCHHHHHhh
Q 016909 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAI--STPISDQFRSDGAVVKGRA 226 (380)
Q Consensus 149 ~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~i--~~~~~~~~~~~~~~~~a~a 226 (380)
+++|.|+|+. |.-++++..+.=.+. ..++++.+++..++||++++.+.+++. .++++ .+..+++-...-
T Consensus 410 ~~~a~GlA~~----Gg~~P~~~t~~~F~~---~~~~air~~a~~~lpvv~~~t~~g~g~G~dG~tH--q~~edla~lr~i 480 (651)
T 2e6k_A 410 GAILNGLNLH----GGYRAYGGTFLVFSD---YMRPAIRLAALMGVPTVFVFTHDSIALGEDGPTH--QPVEHLMSLRAM 480 (651)
T ss_dssp HHHHHHHHHH----SSCEEEEEEEGGGGG---GSHHHHHHHHHHTCCCEEEEECCSGGGCTTCTTT--CCSSHHHHHHTS
T ss_pred HHHHHHHHHc----CCCEEEEEeHHHHHH---HHHHHHHHHHhcCCCEEEEEECCccccCCCcCcc--ccHHHHHHhcCC
Confidence 4577787765 323455555532221 245778889999999999998888764 34444 334455544333
Q ss_pred cCeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEE
Q 016909 227 YGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEA 264 (380)
Q Consensus 227 ~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~ 264 (380)
-|+.++.-. |..++..+++.|++. .++|++|-.
T Consensus 481 P~l~V~~Pa--d~~E~~~~l~~A~~~---~~~Pv~i~~ 513 (651)
T 2e6k_A 481 PNLFVIRPA--DAYETFYAWLVALRR---KEGPTALVL 513 (651)
T ss_dssp TTCEEECCS--SHHHHHHHHHHHHHC---CSSCEEEEC
T ss_pred CCcEEEecC--CHHHHHHHHHHHHHc---CCCCEEEEE
Confidence 477777654 999999999999863 368998854
No 69
>1qs0_B 2-oxoisovalerate dehydrogenase beta-subunit; heterotetramer, THDP cofactor, oxidoreductase; HET: TDP; 2.40A {Pseudomonas putida} SCOP: c.36.1.7 c.48.1.2 PDB: 2bp7_B
Probab=91.69 E-value=0.35 Score=46.32 Aligned_cols=101 Identities=16% Similarity=0.097 Sum_probs=64.0
Q ss_pred CccHHHHHHHHHhhhcCCCceeEE-E-eCccccCcchHHHHHH-HHHH--------cCCCEEEEEEcCCcceeeeccccc
Q 016909 147 TQLPHAVGAAYALKMDRKDACAVT-Y-FGDGGTSEGDFHAALN-FSAV--------TEAPVIFICRNNGWAISTPISDQF 215 (380)
Q Consensus 147 ~~~p~AvG~A~A~k~~~~~~~vv~-~-~GDG~~~eG~~~Eal~-~A~~--------~~Lpvi~vv~NN~~~i~~~~~~~~ 215 (380)
+.+++|.|+|++ | .++++ + ++++.. ..++.+. .++. +++|+++++.+.+ +..++++.
T Consensus 63 ~~~~~a~G~A~~----G--~rp~~~~t~~~F~~---~a~dqi~~~~a~~~~~~~~~~~~pvv~~~~~~g-~~~G~th~-- 130 (338)
T 1qs0_B 63 GIVGTAVGMGAY----G--LRPVVEIQFADYFY---PASDQIVSEMARLRYRSAGEFIAPLTLRMPCGG-GIYGGQTH-- 130 (338)
T ss_dssp HHHHHHHHHHHH----T--CEEEEECSCGGGCG---GGHHHHHTTTTTHHHHTTTSSCCCCEEEEEECC-SSSCCSSS--
T ss_pred HHHHHHHHHHhC----C--CEEEEEeccHhHHH---HHHHHHHHHHHHHhhhcCCCCCCCEEEEEeCCC-CCCCcccc--
Confidence 346678888876 2 34444 3 888862 3445543 3443 3599999987654 44444332
Q ss_pred CCcCHHHHHhhcCeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEE
Q 016909 216 RSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEAL 265 (380)
Q Consensus 216 ~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~ 265 (380)
+..++.-...-.||.++.-. |+.+.+..++.|++. ++|++|-..
T Consensus 131 s~~d~~~l~~iP~l~V~~Ps--d~~e~~~~l~~A~~~----~~Pv~i~~p 174 (338)
T 1qs0_B 131 SQSPEAMFTQVCGLRTVMPS--NPYDAKGLLIASIEC----DDPVIFLEP 174 (338)
T ss_dssp SCCCHHHHTTSTTCEEECCC--SHHHHHHHHHHHHHS----SSCEEEEEE
T ss_pred cccHHHHHhcCCCCEEEeeC--CHHHHHHHHHHHHhc----CCcEEEEEc
Confidence 23344433333488888765 999999999998863 689998543
No 70
>2r8o_A Transketolase 1, TK 1; reaction intermediate, calcium, metal-binding, thiamine pyrophosphate, transferase; HET: T5X; 1.47A {Escherichia coli K12} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 2r5n_A* 2r8p_A* 1qgd_A*
Probab=91.66 E-value=0.77 Score=48.23 Aligned_cols=101 Identities=11% Similarity=0.004 Sum_probs=66.8
Q ss_pred cHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcce--eeecccccCCcCHHHHHhh
Q 016909 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAI--STPISDQFRSDGAVVKGRA 226 (380)
Q Consensus 149 ~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~i--~~~~~~~~~~~~~~~~a~a 226 (380)
+++|.|+|+. +.-+++++.+...+. ..++++..++..++||++++.+.+++. +++++ .+..+++-...-
T Consensus 415 v~~a~GlA~~----gG~~P~~~tf~~F~~---~~~~~ir~~a~~~lpvv~~~t~~g~~~G~dG~tH--q~~edla~lr~i 485 (669)
T 2r8o_A 415 TAIANGISLH----GGFLPYTSTFLMFVE---YARNAVRMAALMKQRQVMVYTHDSIGLGEDGPTH--QPVEQVASLRVT 485 (669)
T ss_dssp HHHHHHHHHH----SSCEEEEEEEGGGGG---TTHHHHHHHHHTTCCCEEEEECCSGGGCTTCTTT--CCSSHHHHHHTS
T ss_pred HHHHHHHHHc----CCCeEEEeehHHHHH---HHHHHHHHHHhcCCCEEEEEeCCCcCcCCCCCcc--CCHHHHHHhcCC
Confidence 4567777765 223455555544432 245778889999999999998887764 34444 234444444333
Q ss_pred cCeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEE
Q 016909 227 YGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIE 263 (380)
Q Consensus 227 ~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe 263 (380)
-|+.++.-- |..++..+++.|++. .++|++|-
T Consensus 486 P~l~V~~Pa--d~~E~~~~l~~a~~~---~~~Pv~i~ 517 (669)
T 2r8o_A 486 PNMSTWRPC--DQVESAVAWKYGVER---QDGPTALI 517 (669)
T ss_dssp TTCEEECCS--SHHHHHHHHHHHHHC---SSSCEEEE
T ss_pred CCCEEEecC--CHHHHHHHHHHHHHh---CCCcEEEE
Confidence 477666544 999999999999863 37899884
No 71
>2x7j_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene -1-carboxylate synthase; transferase, metal-binding; HET: TPP; 2.35A {Bacillus subtilis}
Probab=91.32 E-value=0.3 Score=50.58 Aligned_cols=108 Identities=13% Similarity=0.032 Sum_probs=69.1
Q ss_pred HHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcceeeecccccCCcCHHHHHhhcCe
Q 016909 150 PHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGV 229 (380)
Q Consensus 150 p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~G~ 229 (380)
-+|.|.|.+. +.-.+++|..|=|+++ ..-++..|..-++|||+|.-+-..........| ..|....++.+--
T Consensus 83 ~aA~GyAr~t---gkpgv~~~TsGpG~~N---~~~gia~A~~~~vPlv~ItG~~~~~~~g~~~~Q--~~d~~~~~~~~tk 154 (604)
T 2x7j_A 83 FFALGLAKAK---QRPVLLICTSGTAAAN---FYPAVVEAHYSRVPIIVLTADRPHELREVGAPQ--AINQHFLFGNFVK 154 (604)
T ss_dssp HHHHHHHHHH---TSCEEEEECSSHHHHT---THHHHHHHHHHTCCEEEEEEECCGGGSSSCCTT--CCCCTTTTGGGSS
T ss_pred HHHHHHHHhh---CCCEEEEECChhHHHH---HHHHHHHHhhcCCCEEEEeCCCCHHHhCCCCCC--cCcHHHHhhhhee
Confidence 3566776653 4556777778888887 345677788889999999876543322111111 2244455666655
Q ss_pred eEEEEeCCCHHH-------HHHHHHHHHHHhhc-cCCcEEEEEEee
Q 016909 230 RSIRVDGNDALA-------IYSAVHAAREMAIG-EGRPILIEALTY 267 (380)
Q Consensus 230 ~~~~VdG~D~~a-------v~~a~~~A~~~ar~-~~gP~lIe~~t~ 267 (380)
....|. ++++ +...+++|+..+.. ..||+.|++-..
T Consensus 155 ~~~~v~--~~~~~~~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~d 198 (604)
T 2x7j_A 155 FFTDSA--LPEESPQMLRYIRTLASRAAGEAQKRPMGPVHVNVPLR 198 (604)
T ss_dssp CEEECC--CCCCSHHHHHHHHHHHHHHHHHHHSSSCCEEEEEEECC
T ss_pred eeeecC--CCcccchhHHHHHHHHHHHHHHhhCCCCCcEEEEcccC
Confidence 566665 3333 77778888877776 469999998753
No 72
>1itz_A Transketolase; calvin cycle, cofactor, thiamine pyrophosphate, plant, transferase; HET: TPP; 2.30A {Zea mays} SCOP: c.36.1.6 c.36.1.10 c.48.1.1
Probab=91.22 E-value=0.87 Score=47.91 Aligned_cols=102 Identities=18% Similarity=0.100 Sum_probs=66.3
Q ss_pred cHHHHHHHHHhhhcC-CCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcce--eeecccccCCcCHHHHHh
Q 016909 149 LPHAVGAAYALKMDR-KDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAI--STPISDQFRSDGAVVKGR 225 (380)
Q Consensus 149 ~p~AvG~A~A~k~~~-~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~i--~~~~~~~~~~~~~~~~a~ 225 (380)
+++|.|+|+. | .-++++.++...+. ..++++..++..++||++++...+++. .++++ .+..+++-...
T Consensus 427 v~~a~GlA~~----G~~~~P~~~t~~~F~~---~~~~~ir~~a~~~lpvv~~~t~~g~g~G~dG~tH--q~~edla~lr~ 497 (675)
T 1itz_A 427 GAICNGIALH----SPGFVPYCATFFVFTD---YMRGAMRISALSEAGVIYVMTHDSIGLGEDGPTH--QPIEHLVSFRA 497 (675)
T ss_dssp HHHHHHHHTT----CTTCEEEEEEEGGGHH---HHHHHHHHHHHHTCCCEEEEECCSGGGCTTCTTT--CCSSHHHHHHS
T ss_pred HHHHHHHHhc----CCCCEEEEEEHHHHHH---HHHHHHHHHHhcCCCEEEEEECCccccCCCCCCc--CcHHHHHHhcc
Confidence 4466666643 4 23556666654442 456788889999999999997777653 34444 23444444333
Q ss_pred hcCeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEE
Q 016909 226 AYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEA 264 (380)
Q Consensus 226 a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~ 264 (380)
--|+.++. --|..++..+++.|++. .++|++|-.
T Consensus 498 iP~l~V~~--Pad~~e~~~~l~~a~~~---~~~Pv~i~~ 531 (675)
T 1itz_A 498 MPNILMLR--PADGNETAGAYKVAVLN---RKRPSILAL 531 (675)
T ss_dssp SSSCEEEC--CCSHHHHHHHHHHHHHC---TTSCEEEEE
T ss_pred CCCeEEEE--CCCHHHHHHHHHHHHHh---CCCcEEEEe
Confidence 33666554 35999999999999863 378998843
No 73
>2ozl_B PDHE1-B, pyruvate dehydrogenase E1 component subunit beta; pyruvate_dehydrogenase_complex, human, multienzyme_complex_component; HET: TPP; 1.90A {Homo sapiens} SCOP: c.36.1.7 c.48.1.2 PDB: 1ni4_B* 3exe_B* 3exf_B* 3exg_B 3exh_B* 3exi_B
Probab=90.99 E-value=0.49 Score=45.55 Aligned_cols=99 Identities=15% Similarity=0.029 Sum_probs=61.4
Q ss_pred ccHHHHHHHHHhhhcCCCceeEE-EeCccccCcchHHHHHHH-HH--------HcCCCEEEEEEcCCcceeeecccccCC
Q 016909 148 QLPHAVGAAYALKMDRKDACAVT-YFGDGGTSEGDFHAALNF-SA--------VTEAPVIFICRNNGWAISTPISDQFRS 217 (380)
Q Consensus 148 ~~p~AvG~A~A~k~~~~~~~vv~-~~GDG~~~eG~~~Eal~~-A~--------~~~Lpvi~vv~NN~~~i~~~~~~~~~~ 217 (380)
.+++|.|+|++ | -++++. .+++... ..++.+.. ++ +.++||++++.+...+-.++++.+ +.
T Consensus 74 ~v~~a~G~A~~----G-~rp~~~~~f~~F~~---~a~dqi~~~~a~~~y~~~g~~~~pvv~~~~~G~~g~~G~tHs~-~~ 144 (341)
T 2ozl_B 74 FAGIAVGAAMA----G-LRPICEFMTFNFSM---QAIDQVINSAAKTYYMSGGLQPVPIVFRGPNGASAGVAAQHSQ-CF 144 (341)
T ss_dssp HHHHHHHHHHT----T-CEEEEECSSGGGGG---GGHHHHHTTTTTHHHHTTSSCCCCCEEEEECSCCSSCCGGGCC-CC
T ss_pred HHHHHHHHHHC----C-CEEEEEeccHHHHH---HHHHHHHHHHHHHHhhccccCCCCEEEEEcCcCCCCCCcchhh-HH
Confidence 45677777765 2 234444 3888772 33455544 33 278999999986322224444422 22
Q ss_pred cCHHHHHhhc-CeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEE
Q 016909 218 DGAVVKGRAY-GVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEA 264 (380)
Q Consensus 218 ~~~~~~a~a~-G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~ 264 (380)
+ ...... ||.++.-. |+.+.+..++.|++. ++|++|-.
T Consensus 145 -e--a~l~~iP~l~V~~Ps--d~~e~~~~l~~a~~~----~~Pv~i~~ 183 (341)
T 2ozl_B 145 -A--AWYGHCPGLKVVSPW--NSEDAKGLIKSAIRD----NNPVVVLE 183 (341)
T ss_dssp -H--HHHHTSTTCEEECCC--SHHHHHHHHHHHHHS----SSCEEEEE
T ss_pred -H--HHhccCCCCEEEEeC--CHHHHHHHHHHHHhc----CCCEEEEE
Confidence 2 233333 77777655 999999999998863 68998855
No 74
>2vk8_A Pyruvate decarboxylase isozyme 1; asymmetric active sites, phenylalanine catabolism, tryptophan catabolism, thiamine pyrophosphate; HET: TPP; 1.42A {Saccharomyces cerevisiae} PDB: 1qpb_A* 2vk1_A* 2w93_A* 1pyd_A* 1pvd_A* 2vk4_A* 2vjy_A* 2g1i_A*
Probab=90.87 E-value=0.59 Score=47.79 Aligned_cols=109 Identities=13% Similarity=0.048 Sum_probs=69.2
Q ss_pred cHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcceee---eccc---ccCCcCHHH
Q 016909 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAIST---PISD---QFRSDGAVV 222 (380)
Q Consensus 149 ~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~i~~---~~~~---~~~~~~~~~ 222 (380)
.-+|.|.|.+. + ..++++..|=|+++ ..-++..|...++|||+|+-+-...... .... .....+..+
T Consensus 55 a~~A~Gyar~t---g-~~v~~~TsGpG~~N---~~~gia~A~~~~~Pll~itg~~~~~~~~~~~~~~~~~g~~~~q~~~~ 127 (563)
T 2vk8_A 55 AYAADGYARIK---G-MSCIITTFGVGELS---ALNGIAGSYAEHVGVLHVVGVPSISAQAKQLLLHHTLGNGDFTVFHR 127 (563)
T ss_dssp HHHHHHHHHHH---S-CEEEEEETTHHHHH---HHHHHHHHHHHTCCEEEEEEECCHHHHHTTCCCTTSCSSSCSSHHHH
T ss_pred HHHHHHHHHhh---C-CcEEEEcCCCcHHH---HHHHHHHHHhhCCCEEEEECCCChHHhhcccccccccCCcchHHHHH
Confidence 34577777664 4 34677777888875 3456777888899999998765432110 0000 001124567
Q ss_pred HHhhcCeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEe
Q 016909 223 KGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALT 266 (380)
Q Consensus 223 ~a~a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t 266 (380)
.++.+--....+. +++++.+.+.+|+..+..+.||+.|++-.
T Consensus 128 ~~~~~~k~~~~v~--~~~~~~~~i~~A~~~A~~~~GPV~l~iP~ 169 (563)
T 2vk8_A 128 MSANISETTAMIT--DIATAPAEIDRCIRTTYVTQRPVYLGLPA 169 (563)
T ss_dssp HHHTTCSEEEECC--CTTTHHHHHHHHHHHHHHHTSCEEEEEET
T ss_pred HhhhhEEEEEEeC--CHHHHHHHHHHHHHHHHhCCCCEEEEech
Confidence 7777776777776 65556666666666665567999998865
No 75
>1gpu_A Transketolase; transferase(ketone residues); HET: THD; 1.86A {Saccharomyces cerevisiae} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 1ngs_A* 1trk_A* 1ay0_A* 1tkb_A* 1tka_A* 1tkc_A*
Probab=90.44 E-value=0.85 Score=48.02 Aligned_cols=101 Identities=15% Similarity=0.094 Sum_probs=65.9
Q ss_pred cHHHHHHHHHhhhcCCCc-eeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcce--eeecccccCCcCHHHHHh
Q 016909 149 LPHAVGAAYALKMDRKDA-CAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAI--STPISDQFRSDGAVVKGR 225 (380)
Q Consensus 149 ~p~AvG~A~A~k~~~~~~-~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~i--~~~~~~~~~~~~~~~~a~ 225 (380)
+++|.|+|+. |.-+ +++..+..-+. ..++++..++..++||+|++...+++. +++++ .+..+++-...
T Consensus 422 vg~a~GlA~~----Gg~~~P~~~~f~~F~~---~~~~air~~a~~~lpvv~v~t~~g~g~G~dG~tH--q~~edla~lr~ 492 (680)
T 1gpu_A 422 GAIMNGISAF----GANYKPYGGTFLNFVS---YAAGAVRLSALSGHPVIWVATHDSIGVGEDGPTH--QPIETLAHFRS 492 (680)
T ss_dssp HHHHHHHHHH----CTTCEEEEEEEHHHHG---GGHHHHHHHHHHTCCCEEEEECCSGGGCTTCTTT--CCSSHHHHHHT
T ss_pred HHHHHHHHhc----CCCceEEEeehHHHHH---HHHHHHHHHHhcCCCEEEEEeCCccccCCCCCcc--CCHHHHHHhcC
Confidence 4567777765 3234 45555533322 245678889999999999997777664 34544 23444444433
Q ss_pred hcCeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEE
Q 016909 226 AYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIE 263 (380)
Q Consensus 226 a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe 263 (380)
--|+.++.- .|+.++..+++.|++. .++|++|-
T Consensus 493 iP~l~V~~P--ad~~e~~~~l~~A~~~---~~~Pv~i~ 525 (680)
T 1gpu_A 493 LPNIQVWRP--ADGNEVSAAYKNSLES---KHTPSIIA 525 (680)
T ss_dssp SSSCEEECC--CSHHHHHHHHHHHHHC---SSCCEEEE
T ss_pred CCCCEEEec--CCHHHHHHHHHHHHHh---CCCcEEEE
Confidence 347666654 4899999999999863 37899884
No 76
>2vbf_A Branched-chain alpha-ketoacid decarboxylase; KDCA, flavoprotein, THDP-dependent enzymes, thiamine pyrophosphate, lyase; HET: TPP; 1.60A {Lactococcus lactis} PDB: 2vbg_A*
Probab=90.28 E-value=0.8 Score=46.90 Aligned_cols=109 Identities=16% Similarity=0.055 Sum_probs=69.4
Q ss_pred cHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcceeeec---cccc---CCcCHHH
Q 016909 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPI---SDQF---RSDGAVV 222 (380)
Q Consensus 149 ~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~i~~~~---~~~~---~~~~~~~ 222 (380)
.-+|.|.|.+. + ..++++..|=|+++ ..-++..|...++|||+|+-+......... .... ...+...
T Consensus 76 ~~~A~GyAr~t---G-~~v~~~tsGpG~~N---~~~gi~~A~~~~vPlv~itg~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (570)
T 2vbf_A 76 SYMADGYARTK---K-AAAFLTTFGVGELS---AINGLAGSYAENLPVVEIVGSPTSKVQNDGKFVHHTLADGDFKHFMK 148 (570)
T ss_dssp HHHHHHHHHHH---S-CEEEEEETTHHHHH---HHHHHHHHHHTTCCEEEEEEECCHHHHHHTCCCTTSCSSSCCCHHHH
T ss_pred HHHHHHHHHHh---C-CeEEEEcCCCCHHH---HHHHHHHHhhhCCCEEEEeCCCCHHHhhccccceeeccccchHHHHH
Confidence 34577777653 4 45677777877775 345677788889999999977654321110 0000 1122456
Q ss_pred HHhhcCeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEee
Q 016909 223 KGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTY 267 (380)
Q Consensus 223 ~a~a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~ 267 (380)
.++.+--....+. + +++...+++|+..+..+.||+.|++-..
T Consensus 149 ~~~~~tk~~~~v~--~-~~~~~~l~~A~~~A~~~~GPV~l~iP~d 190 (570)
T 2vbf_A 149 MHEPVTAARTLLT--A-ENATYEIDRVLSQLLKERKPVYINLPVD 190 (570)
T ss_dssp HTGGGCSEEEECC--T-TTHHHHHHHHHHHHHHHCCCEEEEEEHH
T ss_pred HhhhhEEEEEEEC--c-ccHHHHHHHHHHHHhhCCCCEEEEcchh
Confidence 7777776777776 4 5666667777666666679999998653
No 77
>1q6z_A BFD, BFDC, benzoylformate decarboxylase; lyase, carbon-carbon, mandelate catabolism, T thiazolone diphosphate, inhibitor, high resolution; HET: TZD; 1.00A {Pseudomonas putida} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1po7_A* 1pi3_A* 3fsj_X* 1mcz_A* 1bfd_A* 2fwn_A* 3fzn_A* 2fn3_A* 2v3w_A* 1yno_A* 3f6b_X* 3f6e_X*
Probab=90.15 E-value=0.38 Score=48.76 Aligned_cols=110 Identities=20% Similarity=0.041 Sum_probs=68.6
Q ss_pred cHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcceeeecccccCCcCHHHHHhhcC
Q 016909 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYG 228 (380)
Q Consensus 149 ~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~G 228 (380)
.-+|.|.|.+. +...++++..|=|.++ ..-++..|...++|||+|.-+-..........+. ..|....++.+-
T Consensus 51 a~~A~Gyar~t---g~~~v~~~tsGpG~~N---~~~~l~~A~~~~~Pll~itg~~~~~~~~~~~~q~-~~d~~~~~~~~~ 123 (528)
T 1q6z_A 51 VGIADGYAQAS---RKPAFINLHSAAGTGN---AMGALSNAWNSHSPLIVTAGQQTRAMIGVEALLT-NVDAANLPRPLV 123 (528)
T ss_dssp HHHHHHHHHHH---TSCEEEEEEHHHHHHH---THHHHHHHHHTTCCEEEEEEECCHHHHTTTCTTC-CTTGGGSSTTSC
T ss_pred HHHHHHHHHHh---CCCEEEEEcCChHHHH---HHHHHHHHhhcCCCEEEEeCCCcccccCCCcccc-cccHHHHHHHhh
Confidence 34577777653 4445666777888775 3455667888999999998765432211111111 024445555554
Q ss_pred eeEEEEeCCCHHHHHHHHHHHHHHhhccC-CcEEEEEEee
Q 016909 229 VRSIRVDGNDALAIYSAVHAAREMAIGEG-RPILIEALTY 267 (380)
Q Consensus 229 ~~~~~VdG~D~~av~~a~~~A~~~ar~~~-gP~lIe~~t~ 267 (380)
-...++. +++++...+.+|+..+..++ ||+.|++-..
T Consensus 124 k~~~~v~--~~~~~~~~i~~A~~~a~~~~~GPV~l~iP~d 161 (528)
T 1q6z_A 124 KWSYEPA--SAAEVPHAMSRAIHMASMAPQGPVYLSVPYD 161 (528)
T ss_dssp SCEECCS--SGGGHHHHHHHHHHHHHSSSCCCEEEEEEGG
T ss_pred HhhhcCC--CHHHHHHHHHHHHHHHhcCCCCcEEEEechh
Confidence 4455554 67777888888887777654 7999998763
No 78
>1ik6_A Pyruvate dehydrogenase; E1BETA, tetramer, GXXXG, oxidoreductase; 2.00A {Pyrobaculum aerophilum} SCOP: c.36.1.7 c.48.1.2
Probab=89.85 E-value=1 Score=43.85 Aligned_cols=99 Identities=16% Similarity=0.004 Sum_probs=55.7
Q ss_pred ccHHHHHHHHHhhhcCCCceeEEE-eCccccCcchHHHHH-HHHHHc--------CCCEEEEEEcCCcceeeecccccCC
Q 016909 148 QLPHAVGAAYALKMDRKDACAVTY-FGDGGTSEGDFHAAL-NFSAVT--------EAPVIFICRNNGWAISTPISDQFRS 217 (380)
Q Consensus 148 ~~p~AvG~A~A~k~~~~~~~vv~~-~GDG~~~eG~~~Eal-~~A~~~--------~Lpvi~vv~NN~~~i~~~~~~~~~~ 217 (380)
.+++|.|+|++ | -++++.+ +++... ..++.+ +-++.. ++||++++.+.+..-..+++. .
T Consensus 110 ~v~~a~G~A~~----G-~rpv~~~tf~~Fl~---~a~Dqi~~~~a~~~~~~~g~~~~pvv~~~~~gg~~g~g~~hs---~ 178 (369)
T 1ik6_A 110 ILGFAMGMAMA----G-LKPVAEIQFVDFIW---LGADELLNHIAKLRYRSGGNYKAPLVVRTPVGSGTRGGLYHS---N 178 (369)
T ss_dssp HHHHHHHHHHT----T-CEEEEECCCC-------CCHHHHHHHHHHHHC------CCCCEEEEEECC-------------
T ss_pred HHHHHHHHHHC----C-CeeEEEecchhHHH---HHHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCCCCCCCcccc---c
Confidence 35667777765 2 2344444 888762 233444 334543 999999998776432222221 1
Q ss_pred cCHHHHHhhc-CeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEE
Q 016909 218 DGAVVKGRAY-GVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEA 264 (380)
Q Consensus 218 ~~~~~~a~a~-G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~ 264 (380)
.+ .....+. ||.++.-. |+.+.+..++.|++ .++|++|-.
T Consensus 179 ~~-~a~l~~iPnl~V~~Ps--d~~e~~~ll~~A~~----~~~Pv~i~~ 219 (369)
T 1ik6_A 179 SP-EAIFVHTPGLVVVMPS--TPYNAKGLLKAAIR----GDDPVVFLE 219 (369)
T ss_dssp -H-HHHHHTCTTCEEECCC--SHHHHHHHHHHHHH----SSSCEEEEE
T ss_pred cH-HHHHcCCCCcEEEecC--CHHHHHHHHHHHHh----CCCCEEEEE
Confidence 22 2344444 77777655 99999999999886 478998843
No 79
>2o1x_A 1-deoxy-D-xylulose-5-phosphate synthase; thiamin, isoprenoid, DXS, transferase; HET: TDP; 2.90A {Deinococcus radiodurans}
Probab=89.63 E-value=0.45 Score=49.63 Aligned_cols=102 Identities=17% Similarity=0.091 Sum_probs=65.8
Q ss_pred ccHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcce-eeecccccCCcCHHHHHhh
Q 016909 148 QLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAI-STPISDQFRSDGAVVKGRA 226 (380)
Q Consensus 148 ~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~i-~~~~~~~~~~~~~~~~a~a 226 (380)
.+++|+|+|++ | -++++.++.+... =.+-..++.++..++|+++++.+.++.. +++++.. ..+++-...-
T Consensus 376 ~~~~a~G~A~~----G-~rp~~~~~~~F~~--~a~dqi~~~~a~~~~pvv~~~~~~g~~g~dG~tH~~--~~d~a~~r~i 446 (629)
T 2o1x_A 376 AVTTAAGMALQ----G-MRPVVAIYSTFLQ--RAYDQVLHDVAIEHLNVTFCIDRAGIVGADGATHNG--VFDLSFLRSI 446 (629)
T ss_dssp HHHHHHHHHHT----T-CEEEEEEEHHHHG--GGHHHHHHTTTTTTCCCEEEEESBBCCCTTCTTTCB--CSHHHHTTTS
T ss_pred HHHHHHHHHHc----C-CEEEEEecHHHHH--HHHHHHHHHHhhcCCCEEEEEECCccCCCCCcccCc--cHHHHHHHcc
Confidence 35567777764 2 3566666766542 2233446778899999999998777521 2343322 2333332222
Q ss_pred cCeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEE
Q 016909 227 YGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEA 264 (380)
Q Consensus 227 ~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~ 264 (380)
-|+.++.-. |+.+.+..++.|++. ++|++|-.
T Consensus 447 P~l~v~~P~--d~~e~~~~~~~a~~~----~~Pv~i~~ 478 (629)
T 2o1x_A 447 PGVRIGLPK--DAAELRGMLKYAQTH----DGPFAIRY 478 (629)
T ss_dssp TTCEEECCS--SHHHHHHHHHHHHHS----SSCEEEEC
T ss_pred CCcEEEecC--CHHHHHHHHHHHHhC----CCCEEEEe
Confidence 477777655 999999999999874 68998854
No 80
>3lq1_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- 1-carboxylate synthase; menaquinone biosynthesis, sephchc synthase, structural genomics; 2.60A {Listeria monocytogenes}
Probab=89.45 E-value=0.54 Score=48.31 Aligned_cols=109 Identities=10% Similarity=0.078 Sum_probs=66.4
Q ss_pred HHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcceeeecccccCCcCHHHHHhhcCe
Q 016909 150 PHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGV 229 (380)
Q Consensus 150 p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~G~ 229 (380)
-+|.|.|.+. +.-.+++|..|=|+++ ..-++..|..-++|||+|.-+-....... ......|....++.+--
T Consensus 63 ~aAdGyAr~t---G~pgv~~~TsGpG~~N---~~~gia~A~~d~vPll~itG~~p~~~~g~--~~~Qe~d~~~~~~~~tk 134 (578)
T 3lq1_A 63 FFALGLAKAS---KRPVVLLCTSGTAAAN---YFPAVAEANLSQIPLIVLTADRPHELRNV--GAPQAMDQLHLYGSHVK 134 (578)
T ss_dssp HHHHHHHHHH---CCCEEEEECSSHHHHT---THHHHHHHHHTTCCEEEEEEECCGGGTTS--SCTTCCCCTTTTGGGSS
T ss_pred HHHHHHHHhh---CCCEEEEECCchhhhh---hhHHHHHHHhcCCCeEEEeCCCCHHhhcC--CCCCCcCHhhHHhhhee
Confidence 3566777653 4556777778888887 34567778889999999986543221111 11111244455555544
Q ss_pred eEEEEe-CCCHHH----HHHHHHHHHHHhhcc-CCcEEEEEEe
Q 016909 230 RSIRVD-GNDALA----IYSAVHAAREMAIGE-GRPILIEALT 266 (380)
Q Consensus 230 ~~~~Vd-G~D~~a----v~~a~~~A~~~ar~~-~gP~lIe~~t 266 (380)
....|. ..+..+ +..++++|+..++.+ .||+.|++-.
T Consensus 135 ~~~~v~~~~~~~~~~~~i~~~l~~A~~~A~~gr~GPV~l~iP~ 177 (578)
T 3lq1_A 135 DFTDMALPENSEEMLRYAKWHGSRAVDIAMKTPRGPVHLNFPL 177 (578)
T ss_dssp EEEECCCCCCSHHHHHHHHHHHHHHHHHHHSSSCCCEEEEEEC
T ss_pred eEeecCCCCCchHHHHHHHHHHHHHHHHhhCCCCCcEEEECcc
Confidence 455554 344332 445677777776665 6999999864
No 81
>1r9j_A Transketolase; domains, EACH of the alpha/beta type, thiamine diphosphate binding domain, transferase; HET: TPP; 2.22A {Leishmania mexicana mexicana} SCOP: c.36.1.6 c.36.1.10 c.48.1.1
Probab=89.30 E-value=1.6 Score=45.88 Aligned_cols=101 Identities=13% Similarity=0.025 Sum_probs=65.5
Q ss_pred cHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcce--eeecccccCCcCHHHHHhh
Q 016909 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAI--STPISDQFRSDGAVVKGRA 226 (380)
Q Consensus 149 ~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~i--~~~~~~~~~~~~~~~~a~a 226 (380)
+++|.|+|+. |.-++++.++..-+. ..++++..++..++|+++++...+++. .++++ .+..+++-...-
T Consensus 415 ~~~a~GlA~~----GG~~P~~~~~~~F~~---~~~~~ir~~a~~~~pvv~~~t~~g~g~G~dG~tH--q~~edla~lr~i 485 (673)
T 1r9j_A 415 CAILNGLDAH----DGIIPFGGTFLNFIG---YALGAVRLAAISHHRVIYVATHDSIGVGEDGPTH--QPVELVAALRAM 485 (673)
T ss_dssp HHHHHHHHHH----SSCEEEEEEEGGGGG---GGHHHHHHHHHHTCCCEEEEECCSGGGCTTCTTT--CCSSHHHHHHHS
T ss_pred HHHHHHHHhc----CCCEEEEEehHHHHH---HHHHHHHHHHhcCCCEEEEEECCccCcCCCCccc--CCHHHHHHHcCC
Confidence 4467777664 323455555533332 345668889999999999987777654 34444 234445444333
Q ss_pred cCeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEE
Q 016909 227 YGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIE 263 (380)
Q Consensus 227 ~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe 263 (380)
-|+.++.- -|+.++..+++.|++. .++|++|-
T Consensus 486 P~l~V~~P--ad~~e~~~~l~~a~~~---~~~Pv~i~ 517 (673)
T 1r9j_A 486 PNLQVIRP--SDQTETSGAWAVALSS---IHTPTVLC 517 (673)
T ss_dssp TTCEEECC--SSHHHHHHHHHHHHHC---TTCCEEEE
T ss_pred CCCEEEeC--CCHHHHHHHHHHHHHh---CCCeEEEE
Confidence 47766654 4899999999999863 37899884
No 82
>3rim_A Transketolase, TK; TPP, transferase; HET: TPP; 2.49A {Mycobacterium tuberculosis}
Probab=89.08 E-value=1.5 Score=46.31 Aligned_cols=101 Identities=12% Similarity=0.053 Sum_probs=63.9
Q ss_pred cHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcc--eeeecccccCCcCHHHHHhh
Q 016909 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWA--ISTPISDQFRSDGAVVKGRA 226 (380)
Q Consensus 149 ~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~--i~~~~~~~~~~~~~~~~a~a 226 (380)
+++|.|+|+. +.-++++..+.. |.. ...-++.+++..++||+|+....+++ .+++++ .+..+++-...-
T Consensus 445 v~~A~GlA~~----gG~~Pv~~tF~~--F~d-~~~~~ir~~al~~lpvv~v~thdg~gvG~dG~TH--q~ied~a~lr~i 515 (700)
T 3rim_A 445 GAILSGIVLH----GPTRAYGGTFLQ--FSD-YMRPAVRLAALMDIDTIYVWTHDSIGLGEDGPTH--QPIEHLSALRAI 515 (700)
T ss_dssp HHHHHHHHHH----SSCEEEEEEEGG--GGG-GGHHHHHHHHHHTCCCEEEEECCSGGGCTTCTTT--SCSSHHHHHHTS
T ss_pred HHHHHHHHHc----CCCEEEEEecHH--HHH-HHHHHHHHhcCCCCCEEEEEeCCCcccCCCCCcc--CChhHHHHHhcC
Confidence 4567777775 222344443321 111 12335778899999999999877765 345544 334555544444
Q ss_pred cCeeEEEEeCCCHHHHHHHHHHHHHHhhccC--CcEEEE
Q 016909 227 YGVRSIRVDGNDALAIYSAVHAAREMAIGEG--RPILIE 263 (380)
Q Consensus 227 ~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~--gP~lIe 263 (380)
-|+.++.-- |..++..+++.|++. .+ +|++|-
T Consensus 516 Pnl~V~~Pa--d~~e~~~~l~~Ai~~---~~~~~Pv~ir 549 (700)
T 3rim_A 516 PRLSVVRPA--DANETAYAWRTILAR---RNGSGPVGLI 549 (700)
T ss_dssp TTCEEECCS--SHHHHHHHHHHHHTT---TTCSSCEEEE
T ss_pred CCCEEEeCC--CHHHHHHHHHHHHHc---cCCCCCEEEE
Confidence 477776644 899999999999864 44 799884
No 83
>3uk1_A Transketolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, thiamine pyrophosphate; 2.15A {Burkholderia thailandensis} PDB: 3upt_A*
Probab=88.80 E-value=1.5 Score=46.36 Aligned_cols=100 Identities=15% Similarity=0.049 Sum_probs=65.0
Q ss_pred cHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcc--eeeecccccCCcCHHHHHhh
Q 016909 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWA--ISTPISDQFRSDGAVVKGRA 226 (380)
Q Consensus 149 ~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~--i~~~~~~~~~~~~~~~~a~a 226 (380)
+++|.|+|+. +.-++++.++. .|.+ .....+..++..++||+|+....+++ .+++++ .+..+++-...-
T Consensus 461 v~~AaGlA~~----~G~~Pv~~~f~--~F~~-~~~~~ir~~a~~~lpv~~v~thdg~gvG~dG~TH--q~~ed~a~lr~i 531 (711)
T 3uk1_A 461 SAAINGLVLH----GGYKPFGGTFL--TFSD-YSRNALRVAALMKVPSIFVFTHDSIGLGEDGPTH--QSVEHVASLRLI 531 (711)
T ss_dssp HHHHHHHHHH----SSCEEEEEEEG--GGHH-HHHHHHHHHHHHTCCCEEEEECCSGGGCTTCTTT--CCSSHHHHHHTS
T ss_pred HHHHHHHHHc----CCCEEEEEEhH--HHHH-HHHHHHHHhhhcCCCEEEEEECCCcCcCCCCCcc--CChhHHHHHhcC
Confidence 5677888763 12344555542 3332 23566778889999999999877764 344544 234444444333
Q ss_pred cCeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEE
Q 016909 227 YGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIE 263 (380)
Q Consensus 227 ~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe 263 (380)
-|+.++.-- |..++..+++.|++ .++|++|-
T Consensus 532 Pnl~V~~Pa--d~~E~~~~l~~Ai~----~~~Pv~ir 562 (711)
T 3uk1_A 532 PNLDVWRPA--DTVETAVAWTYAVA----HQHPSCLI 562 (711)
T ss_dssp TTCEEECCS--SHHHHHHHHHHHHH----SSSCEEEE
T ss_pred CCCEEEecC--CHHHHHHHHHHHHh----cCCCEEEE
Confidence 477776644 89999999999986 47999883
No 84
>1ovm_A Indole-3-pyruvate decarboxylase; thiamine diphosphate, indole-3-acetic acid, TDP dependent enzyme, lyase; HET: TPP; 2.65A {Enterobacter cloacae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9
Probab=88.52 E-value=1.1 Score=45.55 Aligned_cols=109 Identities=17% Similarity=0.064 Sum_probs=68.0
Q ss_pred cHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcceeee---ccc---ccCCcCHHH
Q 016909 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTP---ISD---QFRSDGAVV 222 (380)
Q Consensus 149 ~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~i~~~---~~~---~~~~~~~~~ 222 (380)
.-+|.|.|.+. + ..++++..|=|.++ ..-++..|...++|||+|+-+-....... ... .....+..+
T Consensus 56 ~~~A~Gyar~t---g-~~v~~~tsGpG~~N---~~~gv~~A~~~~~Pll~itg~~p~~~~~~~~~~~~~~g~~~~q~~~~ 128 (552)
T 1ovm_A 56 SYAADGYARCK---G-FAALLTTFGVGELS---AMNGIAGSYAEHVPVLHIVGAPGTAAQQRGELLHHTLGDGEFRHFYH 128 (552)
T ss_dssp HHHHHHHHHHH---S-CEEEEEETTHHHHH---THHHHHHHHHTTCCEEEEEEECCHHHHHHTCCCTTSCSSSCCSHHHH
T ss_pred HHHHHHHHHhh---C-CcEEEEccCCcHHH---HHHHHHHHhhhcCCEEEEECCCCHHHHhcccccccccCCCcHHHHHH
Confidence 44677877764 3 34677778888765 34467778889999999987654322110 000 001123556
Q ss_pred HHhhcCeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEee
Q 016909 223 KGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTY 267 (380)
Q Consensus 223 ~a~a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~ 267 (380)
.++.+--....+. + +.+...+.+|+..+..+.||+.|++-..
T Consensus 129 ~~~~~tk~~~~v~--~-~~~~~~i~~A~~~a~~~~GPV~l~iP~d 170 (552)
T 1ovm_A 129 MSEPITVAQAVLT--E-QNACYEIDRVLTTMLRERRPGYLMLPAD 170 (552)
T ss_dssp HTGGGCSEEEECC--T-TTHHHHHHHHHHHHHHHTCCEEEEEEHH
T ss_pred HHHhheeEEEEEc--c-ccHHHHHHHHHHHHHhCCCCEEEEeehh
Confidence 7777777777776 4 4555566666655555569999998653
No 85
>1umd_B E1-beta, 2-OXO acid dehydrogenase beta subunit; alpha(2)beta(2) tetramer, structural genomics; HET: TDP; 1.90A {Thermus thermophilus} SCOP: c.36.1.7 c.48.1.2 PDB: 1um9_B* 1umc_B* 1umb_B*
Probab=85.70 E-value=4.1 Score=38.50 Aligned_cols=98 Identities=15% Similarity=0.077 Sum_probs=61.2
Q ss_pred ccHHHHHHHHHhhhcCCCceeEEE-eCccccCcchHHHHHH-HHHH--------cCCCEEEEEEcCCcceeeecccccCC
Q 016909 148 QLPHAVGAAYALKMDRKDACAVTY-FGDGGTSEGDFHAALN-FSAV--------TEAPVIFICRNNGWAISTPISDQFRS 217 (380)
Q Consensus 148 ~~p~AvG~A~A~k~~~~~~~vv~~-~GDG~~~eG~~~Eal~-~A~~--------~~Lpvi~vv~NN~~~i~~~~~~~~~~ 217 (380)
.+++|.|+|++ | -++++++ +++.. + ..++.+. .++. .++|+|+++. .++........+ .
T Consensus 63 ~v~~a~G~A~~----G-~~p~~~~t~~~F~-~--~a~dqi~~~~a~~~~~~~g~~~~pvv~~~~-~g~~~~~g~~hs--~ 131 (324)
T 1umd_B 63 IVGAALGMAAH----G-LRPVAEIQFADYI-F--PGFDQLVSQVAKLRYRSGGQFTAPLVVRMP-SGGGVRGGHHHS--Q 131 (324)
T ss_dssp HHHHHHHHHHH----T-CEEEEECSSGGGC-G--GGHHHHHHTTTTHHHHTTTSSCCCCEEEEE-ECSSSSCGGGSS--C
T ss_pred HHHHHHHHHHC----C-CEEEEEeccHhHH-H--HHHHHHHHHHHHHHhhcCCCCcCCEEEEEc-CCCCCCCCCccc--h
Confidence 35678888776 2 2344443 88875 2 3455553 3443 6889999987 344333322222 2
Q ss_pred cCHHHHHhhc-CeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEE
Q 016909 218 DGAVVKGRAY-GVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIE 263 (380)
Q Consensus 218 ~~~~~~a~a~-G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe 263 (380)
.+. ...+.+ |+.++.-. |+.+.+..++.|++ .++|++|-
T Consensus 132 ~~~-a~~~~iP~~~V~~P~--d~~e~~~~l~~a~~----~~~Pv~i~ 171 (324)
T 1umd_B 132 SPE-AHFVHTAGLKVVAVS--TPYDAKGLLKAAIR----DEDPVVFL 171 (324)
T ss_dssp CCH-HHHHTSTTCEEEECC--SHHHHHHHHHHHHH----CSSCEEEE
T ss_pred hHH-HHHhcCCCCEEEEeC--CHHHHHHHHHHHHh----cCCCEEEE
Confidence 344 444444 77777655 99999999999986 47899884
No 86
>1w85_B Pyruvate dehydrogenase E1 component, beta subunit; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: c.36.1.7 c.48.1.2 PDB: 1w88_B* 3dva_B* 3dv0_B* 3duf_B*
Probab=84.12 E-value=2.6 Score=39.91 Aligned_cols=98 Identities=13% Similarity=0.041 Sum_probs=60.4
Q ss_pred CccHHHHHHHHHhhhcCCCceeEE-E-eCccccCcchHHHHHH-HHHH--------cCCCEEEEEEcCCcceeeeccccc
Q 016909 147 TQLPHAVGAAYALKMDRKDACAVT-Y-FGDGGTSEGDFHAALN-FSAV--------TEAPVIFICRNNGWAISTPISDQF 215 (380)
Q Consensus 147 ~~~p~AvG~A~A~k~~~~~~~vv~-~-~GDG~~~eG~~~Eal~-~A~~--------~~Lpvi~vv~NN~~~i~~~~~~~~ 215 (380)
+.+++|.|+|++ | .++++ + ++++.. ..++.+. .++. .++|+|+++. .++....... +
T Consensus 61 ~~v~~a~G~A~~----G--~rp~~~~t~~~F~~---~a~dqi~~~~a~~~~~~~g~~~~pvv~~~~-~g~~~~~g~~--h 128 (324)
T 1w85_B 61 GIGGLAIGLALQ----G--FRPVPEIQFFGFVY---EVMDSICGQMARIRYRTGGRYHMPITIRSP-FGGGVHTPEL--H 128 (324)
T ss_dssp HHHHHHHHHHHT----T--CEEEEBCSSGGGGG---GTHHHHHTTGGGHHHHTTTSSCCCCEEEEE-ECSSSCCCTT--S
T ss_pred HHHHHHHHHHhC----C--CEEEEEecchhHHH---HHHHHHHHHHHHHhhhccCCCcCCEEEEEe-ccCCCCCCCc--c
Confidence 345677777775 2 34444 3 787762 3445553 2443 7899999987 3443333222 2
Q ss_pred CCcCHHHHHhhc-CeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEE
Q 016909 216 RSDGAVVKGRAY-GVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIE 263 (380)
Q Consensus 216 ~~~~~~~~a~a~-G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe 263 (380)
+..+. ....+. ||.++.-. |+.+.+..++.|++ .++|++|-
T Consensus 129 s~~~~-a~~~~iP~l~V~~Ps--d~~e~~~~l~~a~~----~~~Pv~i~ 170 (324)
T 1w85_B 129 SDSLE-GLVAQQPGLKVVIPS--TPYDAKGLLISAIR----DNDPVIFL 170 (324)
T ss_dssp SCCCH-HHHTTSTTCEEECCS--SHHHHHHHHHHHHH----SSSCEEEE
T ss_pred cccHH-HHHccCCCCEEEeeC--CHHHHHHHHHHHHH----cCCCEEEE
Confidence 22344 444443 67666654 99999999999986 47899885
No 87
>2bfd_B 2-oxoisovalerate dehydrogenase beta subunit; oxidoreductase, multi-enzyme complex, acylation, oxidative decarboxylation, maple syrup urine disease; HET: TDP; 1.39A {Homo sapiens} SCOP: c.36.1.7 c.48.1.2 PDB: 1dtw_B* 1olu_B* 1ols_B* 1v11_B* 1v16_B* 1v1m_B* 1u5b_B* 1wci_B* 1v1r_B* 1x7x_B* 1x7w_B* 1x7z_B* 1x80_B* 2beu_B* 2bev_B* 2bew_B* 2bfb_B* 2bfc_B* 1x7y_B* 2bfe_B* ...
Probab=82.21 E-value=3.5 Score=39.43 Aligned_cols=100 Identities=8% Similarity=0.001 Sum_probs=61.5
Q ss_pred ccHHHHHHHHHhhhcCCCceeEEE-eCccccCcchHHHHHH-HHHHc--------CC-CEEEEEEcCCcceeeecccccC
Q 016909 148 QLPHAVGAAYALKMDRKDACAVTY-FGDGGTSEGDFHAALN-FSAVT--------EA-PVIFICRNNGWAISTPISDQFR 216 (380)
Q Consensus 148 ~~p~AvG~A~A~k~~~~~~~vv~~-~GDG~~~eG~~~Eal~-~A~~~--------~L-pvi~vv~NN~~~i~~~~~~~~~ 216 (380)
.+++|.|+|++ | -++++.+ ++++.. ..++.+. .++.+ ++ ||++++..-+. ..++++. +
T Consensus 79 ~v~~a~G~A~~----G-~rp~~~~tf~~F~~---~a~dqi~~~~a~~~~~~~g~~~~~pvv~~~~~~g~-~~G~th~--~ 147 (342)
T 2bfd_B 79 IVGFGIGIAVT----G-ATAIAEIQFADYIF---PAFDQIVNEAAKYRYRSGDLFNCGSLTIRSPWGCV-GHGALYH--S 147 (342)
T ss_dssp HHHHHHHHHHT----T-CCEEEECSSGGGCG---GGHHHHHTTGGGHHHHTTTSSCCTTEEEEEEESCC-SSCGGGS--S
T ss_pred HHHHHHHHHHC----C-CeeEEEecchhHHH---HHHHHHHHHHHHHHhhhcCCccCCCEEEEEecCCC-CCCcchh--h
Confidence 36677787775 2 2344433 888853 3445543 44443 44 99999876543 3444433 3
Q ss_pred CcCHHHHHhhcCeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEE
Q 016909 217 SDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEA 264 (380)
Q Consensus 217 ~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~ 264 (380)
..+++-...--||.++.-. |+.+.+..++.|+++ ++|++|-.
T Consensus 148 ~~d~~~l~~iP~l~V~~Ps--d~~e~~~~l~~a~~~----~~Pv~i~~ 189 (342)
T 2bfd_B 148 QSPEAFFAHCPGIKVVIPR--SPFQAKGLLLSCIED----KNPCIFFE 189 (342)
T ss_dssp CCCHHHHHTSTTCEEECCS--SHHHHHHHHHHHHHS----SSCEEEEE
T ss_pred HhHHHHHhcCCCcEEEeeC--CHHHHHHHHHHHHhc----CCcEEEEe
Confidence 3455433332377777655 999999999999863 78999844
No 88
>3hww_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- carboxylate synthase; menaquinone, THDP, Mg, vitamin K2, carboxylase, magnesium; HET: AKG; 1.95A {Escherichia coli k-12} PDB: 3flm_A* 3hwx_A* 2jlc_A* 2jla_A*
Probab=81.04 E-value=2.3 Score=43.30 Aligned_cols=107 Identities=14% Similarity=0.026 Sum_probs=65.8
Q ss_pred HHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcceeeecccccCCcCHHHHHhhcCe
Q 016909 150 PHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGV 229 (380)
Q Consensus 150 p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~G~ 229 (380)
-+|.|.|.+. +.-.+++|..|=|+++ ..-++..|..-++|||+|.-+-..........| ..|....++.+--
T Consensus 60 ~~AdGyAr~t---G~pgv~~~TsGpG~~N---~~~gia~A~~d~vPll~itG~~~~~~~g~~~~Q--~~d~~~~~~~~tk 131 (556)
T 3hww_A 60 HLALGLAKVS---KQPVAVIVTSGTAVAN---LYPALIEAGLTGEKLILLTADRPPELIDCGANQ--AIRQPGMFASHPT 131 (556)
T ss_dssp HHHHHHHHHH---CSCEEEEECSSHHHHT---THHHHHHHHHHCCCEEEEEEECCGGGSSSSCTT--CCCCTTTTTTCSS
T ss_pred HHHHHHHHhh---CCCEEEEECCCcHHHh---hhHHHHHHHHhCCCeEEEeCCCCHHHhccCCCc--cccHHHHHhhhee
Confidence 3566776553 4556777788989887 345677788899999999865543322111111 1234445555544
Q ss_pred eEEEEe-CC---CHHHHHHHHHHHHHHhhccCCcEEEEEEe
Q 016909 230 RSIRVD-GN---DALAIYSAVHAAREMAIGEGRPILIEALT 266 (380)
Q Consensus 230 ~~~~Vd-G~---D~~av~~a~~~A~~~ar~~~gP~lIe~~t 266 (380)
....+. .. ....+.+++++|+.. ...||+.|++-.
T Consensus 132 ~~~~v~~~~~~~~~~~i~~~i~~A~~~--~r~GPV~i~iP~ 170 (556)
T 3hww_A 132 HSISLPRPTQDIPARWLVSTIDHALGT--LHAGGVHINCPF 170 (556)
T ss_dssp EEEECCCCCTTSCHHHHHHHHHHHHHS--CCSSCEEEEEEC
T ss_pred EEEecCCCcccccHHHHHHHHHHHHhc--CCCCCEEEeCCc
Confidence 455553 22 235588888888832 335899999864
No 89
>2c42_A Pyruvate-ferredoxin oxidoreductase; 4Fe-4S, iron, iron-sulfur, iron-sulfur cluster, pyruvate catabolism, TPP-dependent enzyme; HET: TPP; 1.78A {Desulfovibrio africanus} SCOP: c.36.1.8 c.36.1.12 c.48.1.3 c.64.1.1 d.58.1.5 PDB: 1b0p_A* 1kek_A* 2c3o_A* 2c3p_A* 2c3u_A* 2c3y_A* 2c3m_A* 2pda_A* 2uza_A*
Probab=79.20 E-value=8.4 Score=43.29 Aligned_cols=110 Identities=16% Similarity=0.077 Sum_probs=69.9
Q ss_pred cHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcceeeecccccCCcCHHH--HHhh
Q 016909 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSDGAVV--KGRA 226 (380)
Q Consensus 149 ~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~i~~~~~~~~~~~~~~~--~a~a 226 (380)
+++++|++++ +.++++.+--.++. ...|.|..++-..+|+|+++-+....-.+ ... ..+..+ .++.
T Consensus 67 ~~aaiGAa~a------GaR~~t~Ts~~Gl~--lm~e~l~~~ag~~~P~Vi~va~R~g~~~g-lsi---~~~hsd~~~ar~ 134 (1231)
T 2c42_A 67 AGAVHGALAA------GALTTTFTASQGLL--LMIPNMYKISGELLPGVFHVTARAIAAHA-LSI---FGDHQDIYAARQ 134 (1231)
T ss_dssp HHHHHHHHHT------TCCEEEEECHHHHH--HHHHHHHHHHHTTCCCEEEEEECCCCSSS-BCC---SCCSHHHHTTTT
T ss_pred HHHHHHHHHc------CChHhhhccHHHHH--HHHHHHHHHhCCCCCEEEEECCCCccCCC-CcC---CCchhhHHHHhc
Confidence 5678888876 34555554433443 35577765555678988888877642111 000 111122 2455
Q ss_pred cCeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEeecCCCCC
Q 016909 227 YGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALTYRVGHHT 273 (380)
Q Consensus 227 ~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R~~gHs 273 (380)
.||.++.-. ++.+.+.-+..|...+.+.+-|+++-..++|. +|.
T Consensus 135 ~G~~vl~ps--s~QEa~dl~~~Af~lAek~~~PVi~~~Dg~~~-sh~ 178 (1231)
T 2c42_A 135 TGFAMLASS--SVQEAHDMALVAHLAAIESNVPFMHFFDGFRT-SHE 178 (1231)
T ss_dssp SSCEEEECC--SHHHHHHHHHHHHHHHHHHCCCEEEEEETTTT-TTC
T ss_pred CCcEEEECC--CHHHHHHHHHHHHHHHHHcCCCEEEEecCccc-ccc
Confidence 687766544 99999998888887777788999998888775 454
No 90
>2yic_A 2-oxoglutarate decarboxylase; lyase; HET: TPP; 1.96A {Mycobacterium smegmatis} PDB: 2xta_A* 2y0p_A* 2xt9_A* 2yid_A*
Probab=72.17 E-value=7.7 Score=41.92 Aligned_cols=107 Identities=10% Similarity=0.040 Sum_probs=61.4
Q ss_pred ccHHHHHHHHHhhhcCCCceeEEEeCccccCcch---HHHHHHHHH-Hc--CCCEEEEEEcCCcceeeecccccCCcCHH
Q 016909 148 QLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGD---FHAALNFSA-VT--EAPVIFICRNNGWAISTPISDQFRSDGAV 221 (380)
Q Consensus 148 ~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~---~~Eal~~A~-~~--~Lpvi~vv~NN~~~i~~~~~~~~~~~~~~ 221 (380)
.++.|+|+|++ +++.+++.-.-=|.|..+. +-+-++.+. .| ++||++++....++ .++++.+...+++.
T Consensus 596 ~vG~a~G~A~~----G~~~~~i~eaqf~dF~~~AQ~~~DQ~i~~~~~k~~~~~~vvi~~p~G~~G-~Gp~Hs~~~~E~~l 670 (868)
T 2yic_A 596 AVGFEYGYSVG----NPDAMVLWEAQFGDFVNGAQSIIDEFISSGEAKWGQLSDVVLLLPHGHEG-QGPDHTSGRIERFL 670 (868)
T ss_dssp HHHHHHHHHHH----CTTSEEEEECSSGGGGGGGHHHHHHTTTTHHHHHCCCCCCEEEEECCCSS-SCTTSSCCCHHHHH
T ss_pred HHHHHHHHHcc----CCCCceEEEEehHHHHhhHHHHHHHHHHHHHHHhCCCCCEEEEecCCCCC-CChhhcCCcHHHHH
Confidence 45567777665 5555554444444554443 333223331 23 67999999865543 44544433233444
Q ss_pred HHHhhcCeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEE
Q 016909 222 VKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIE 263 (380)
Q Consensus 222 ~~a~a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe 263 (380)
....--||.++... |+.+....++.++.. ..++|++|-
T Consensus 671 ~l~~~pnm~V~~Ps--~p~~~~~lLr~a~~~--~~~~Pvii~ 708 (868)
T 2yic_A 671 QLWAEGSMTIAMPS--TPANYFHLLRRHGKD--GIQRPLIVF 708 (868)
T ss_dssp HHCCTTSCEEECCC--SHHHHHHHHHHHHHS--SCCCCEEEE
T ss_pred hcCCCCCCEEEEeC--CHHHHHHHHHHHHhc--CCCCcEEEE
Confidence 43333467666555 999999999887752 235898773
No 91
>3ibs_A Conserved hypothetical protein BATB; structural genomics, protein structure, midwest center for S genomics, MCSG, PSI-2; HET: MSE; 2.10A {Bacteroides thetaiotaomicron}
Probab=71.58 E-value=17 Score=31.14 Aligned_cols=71 Identities=17% Similarity=0.085 Sum_probs=44.6
Q ss_pred CceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcceeeecc------------c---ccCCcCHHHHHhhcCe
Q 016909 165 DACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPIS------------D---QFRSDGAVVKGRAYGV 229 (380)
Q Consensus 165 ~~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~i~~~~~------------~---~~~~~~~~~~a~a~G~ 229 (380)
...+++++.||..+.+...+.+..+...+++|..|-.-+.-+...+.. . ......+.++|+.-|.
T Consensus 111 ~~~~ivllTDG~~~~~~~~~~~~~~~~~~i~v~~igig~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~~L~~iA~~~gG 190 (218)
T 3ibs_A 111 VGRAIIVITDGENHEGGAVEAAKAAAEKGIQVSVLGVGMPEGAPIPVEGTNDYRRDREGNVIVTRLNEGMCQEIAKDGKG 190 (218)
T ss_dssp CCEEEEEEECCTTCCSCHHHHHHHHHTTTEEEEEEEESCTTCEECBCTTSSCBCBCTTSCBCEECCCHHHHHHHHHHTEE
T ss_pred CCcEEEEEcCCCCCCCcHHHHHHHHHhcCCEEEEEEecCCCCCcccccCCCceeEcCCCCEeEecCCHHHHHHHHHhcCC
Confidence 457999999999987767777777777777766665443211110100 0 1112235678888888
Q ss_pred eEEEEe
Q 016909 230 RSIRVD 235 (380)
Q Consensus 230 ~~~~Vd 235 (380)
..+.++
T Consensus 191 ~~~~~~ 196 (218)
T 3ibs_A 191 IYVRVD 196 (218)
T ss_dssp EEEEEC
T ss_pred EEEECC
Confidence 888876
No 92
>2jgd_A 2-oxoglutarate dehydrogenase E1 component; flavoprotein, oxidoreductase, thiamine diphosphate, thiamine pyrophosphate, adenosine monophosphate; HET: AMP; 2.6A {Escherichia coli} PDB: 2jgd_B*
Probab=71.56 E-value=6.5 Score=42.82 Aligned_cols=102 Identities=14% Similarity=0.146 Sum_probs=58.1
Q ss_pred ccHHHHHHHHHhhhcCCCceeEE--EeCccccCcc--hHHH-HHHHH-HHc--CCCEEEEEEcCCcceeeecccccCCcC
Q 016909 148 QLPHAVGAAYALKMDRKDACAVT--YFGDGGTSEG--DFHA-ALNFS-AVT--EAPVIFICRNNGWAISTPISDQFRSDG 219 (380)
Q Consensus 148 ~~p~AvG~A~A~k~~~~~~~vv~--~~GDG~~~eG--~~~E-al~~A-~~~--~Lpvi~vv~NN~~~i~~~~~~~~~~~~ 219 (380)
.++.|.|+|++ +....+|+ .+|| |..| ..+. -++-+ +.| ++||++++.. +|...++.+.+. .
T Consensus 664 ~vg~a~G~A~~----G~~~lpv~e~qf~d--F~~~AQra~DQii~~~~ak~~~~~~vv~~l~~-G~~g~G~~Hss~---~ 733 (933)
T 2jgd_A 664 VLAFEYGYATA----EPRTLTIWEAQFGD--FANGAQVVIDQFISSGEQKWGRMCGLVMLLPH-GYEGQGPEHSSA---R 733 (933)
T ss_dssp HHHHHHHHHHH----CTTSEEEEEC-CGG--GGGGGHHHHHHTTTTHHHHHCCCCCCEEEEEC-CCSSSCTTSSCC---C
T ss_pred HHHHHHHHHhc----CCCCCCEEEEEEhh--hhcccHHHHHHHHHHHHHHHccCCCEEEEEeC-CCCCCCcccccc---h
Confidence 45566666665 55444443 5654 4333 2222 23334 344 7899999986 554445543332 2
Q ss_pred HHHHHhhc---CeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEE
Q 016909 220 AVVKGRAY---GVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIE 263 (380)
Q Consensus 220 ~~~~a~a~---G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe 263 (380)
+.+.+... ||.++... |+.+....++.++. +..++|++|-
T Consensus 734 ~E~~l~~~~~pnm~V~~Ps--t~~e~~~lLr~a~~--~~~~~Pvii~ 776 (933)
T 2jgd_A 734 LERYLQLCAEQNMQVCVPS--TPAQVYHMLRRQAL--RGMRRPLVVM 776 (933)
T ss_dssp HHHHHHTCCTTCCEEECCC--SHHHHHHHHHHHHH--SSCCCCEEEE
T ss_pred HHHHHHHhCCCCeEEEecC--CHHHHHHHHHHHHH--hcCCCcEEEE
Confidence 34444433 66665544 99999999988742 2347999883
No 93
>2xt6_A 2-oxoglutarate decarboxylase; lyase, KDH, KGD; HET: TPP; 2.74A {Mycobacterium smegmatis}
Probab=71.23 E-value=7.8 Score=43.04 Aligned_cols=107 Identities=10% Similarity=0.040 Sum_probs=62.2
Q ss_pred ccHHHHHHHHHhhhcCCCceeEEEeCccccCcch---HHHHHHHHH-Hc--CCCEEEEEEcCCcceeeecccccCCcCHH
Q 016909 148 QLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGD---FHAALNFSA-VT--EAPVIFICRNNGWAISTPISDQFRSDGAV 221 (380)
Q Consensus 148 ~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~---~~Eal~~A~-~~--~Lpvi~vv~NN~~~i~~~~~~~~~~~~~~ 221 (380)
.++.|+|+|++ +++.+++.-.-=|.|..+. +-+-++-+. .| ++||++++...+.+ .++++.+...+++.
T Consensus 841 ~vg~a~G~A~~----G~~~~~i~Eaqf~dF~~~aQ~~~DQ~i~~~~~k~~~~~~vv~~lp~G~~G-~G~~Hs~~~~E~~l 915 (1113)
T 2xt6_A 841 AVGFEYGYSVG----NPDAMVLWEAQFGDFVNGAQSIIDEFISSGEAKWGQLSDVVLLLPHGHEG-QGPDHTSGRIERFL 915 (1113)
T ss_dssp HHHHHHHHHHH----CTTSEEEEECSSGGGGGGGHHHHHHTTTTHHHHHCCCCCCEEEEECCCSS-SCTTSSCCCHHHHH
T ss_pred HHHHHHHHHhc----CCCCceEEEEEEHHHHhhhHHHHHHHHHHHHHHhCCCCCEEEEeCCCCCC-CChhhhcccHHHHH
Confidence 45566666665 5555555444444554444 333233331 23 67999999865543 55544443333444
Q ss_pred HHHhhcCeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEE
Q 016909 222 VKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIE 263 (380)
Q Consensus 222 ~~a~a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe 263 (380)
..+.--||.++... |+.+.+..++.++.+ ..++|++|-
T Consensus 916 ~l~~~pnm~V~~Ps--~~~~~~~lLr~a~~~--~~~~Pvii~ 953 (1113)
T 2xt6_A 916 QLWAEGSMTIAMPS--TPANYFHLLRRHGKD--GIQRPLIVF 953 (1113)
T ss_dssp HHCCTTSCEEECCS--SHHHHHHHHHHHHHS--SCCCCEEEE
T ss_pred hcCCCCCcEEEecC--CHHHHHHHHHHHHhc--cCCCCEEEE
Confidence 33333467666555 999999999987752 235899873
No 94
>2zzd_B Thiocyanate hydrolase subunit beta; scnase, cobalt, metalloprotein, sulfenic acid, sulfinic acid, nitrIle hydratase, carbonyl sulfide; HET: FRU TLA BGC; 1.78A {Thiobacillus thioparus} PDB: 2dd4_B 2dxb_B 2dd5_B* 2dxc_B*
Probab=59.61 E-value=13 Score=31.59 Aligned_cols=37 Identities=5% Similarity=0.082 Sum_probs=31.1
Q ss_pred HHHHHhCCChHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
Q 016909 287 IEWWRTTQDPVTRFRKWIESNGWWNGDIESELRSSVRKQILHA 329 (380)
Q Consensus 287 ~~~~~~~~DPi~~~~~~L~~~g~~t~~~~~~i~~~~~~~v~~a 329 (380)
+++| +..+.+-|+++|++|++|+++..+++++.....
T Consensus 109 Ye~W------L~ALe~lLvekGvit~~EL~ar~aEv~ar~~~~ 145 (157)
T 2zzd_B 109 YGRW------LLTAARILVDKQFVTLTELHNKIVEMRERVASG 145 (157)
T ss_dssp HHHH------HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHT
T ss_pred HHHH------HHHHHHHHHHcCCCCHHHHHHHHHHHHHhhhcc
Confidence 5667 356899999999999999999999998887654
No 95
>4hhu_A OR280; engineered protein, PSI-biology, structural genomi unknown function; HET: AE4 PG4; 2.00A {Synthetic construct}
Probab=50.08 E-value=86 Score=25.19 Aligned_cols=35 Identities=23% Similarity=0.208 Sum_probs=29.2
Q ss_pred hcCeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcE
Q 016909 226 AYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPI 260 (380)
Q Consensus 226 a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~ 260 (380)
+.|.-.++..|.|.+++..++++.+..+|+..|.+
T Consensus 81 gsgvm~i~f~gddlea~ekalkemirqarkfagtv 115 (170)
T 4hhu_A 81 GSGVMVIVFEGDDLEALEKALKEMIRQARKFAGTV 115 (170)
T ss_dssp TCCEEEEEEECSCHHHHHHHHHHHHHHHHHTTCEE
T ss_pred CceEEEEEEecCcHHHHHHHHHHHHHHHHhhcceE
Confidence 34556677889999999999999999999987754
No 96
>4hhu_A OR280; engineered protein, PSI-biology, structural genomi unknown function; HET: AE4 PG4; 2.00A {Synthetic construct}
Probab=44.67 E-value=33 Score=27.62 Aligned_cols=33 Identities=24% Similarity=0.234 Sum_probs=28.8
Q ss_pred CeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcE
Q 016909 228 GVRSIRVDGNDALAIYSAVHAAREMAIGEGRPI 260 (380)
Q Consensus 228 G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~ 260 (380)
|.-.++..|.|.+++..++++.+..+|+..|.+
T Consensus 2 gvm~i~f~gddlea~ekalkemirqarkfagtv 34 (170)
T 4hhu_A 2 GVMVIVFEGDDLEALEKALKEMIRQARKFAGTV 34 (170)
T ss_dssp CEEEEEEECSCHHHHHHHHHHHHHHHHHTTCEE
T ss_pred ceEEEEEecCcHHHHHHHHHHHHHHHHhhcceE
Confidence 566778899999999999999999999987754
No 97
>2kl8_A OR15; structural genomics, PSI-2, protein structure initiative, de novo protein, ferrodoxin fold; NMR {Artificial gene}
Probab=40.79 E-value=36 Score=24.34 Aligned_cols=29 Identities=24% Similarity=0.204 Sum_probs=25.0
Q ss_pred EEEeCCCHHHHHHHHHHHHHHhhccCCcE
Q 016909 232 IRVDGNDALAIYSAVHAAREMAIGEGRPI 260 (380)
Q Consensus 232 ~~VdG~D~~av~~a~~~A~~~ar~~~gP~ 260 (380)
++..|.|.++...++++.+..+|+..|.+
T Consensus 5 irfrgddleafekalkemirqarkfagtv 33 (85)
T 2kl8_A 5 IRFRGDDLEAFEKALKEMIRQARKFAGTV 33 (85)
T ss_dssp EEEECSSHHHHHHHHHHHHHHHTTTTCEE
T ss_pred eeecCCcHHHHHHHHHHHHHHHHhhcceE
Confidence 45678999999999999999999887754
No 98
>2w84_A Peroxisomal membrane protein PEX14; zellweger syndrome, alternative splicing, phosphoprotein, protein complex, disease mutation, peroxisome; NMR {Homo sapiens} PDB: 2w85_A
Probab=36.96 E-value=38 Score=24.65 Aligned_cols=23 Identities=17% Similarity=0.362 Sum_probs=18.2
Q ss_pred CChHHHHHHHHHHCCCCCHHHHHH
Q 016909 294 QDPVTRFRKWIESNGWWNGDIESE 317 (380)
Q Consensus 294 ~DPi~~~~~~L~~~g~~t~~~~~~ 317 (380)
.-|+..=.++|..+| +|++|+++
T Consensus 32 ~sp~~~K~~FL~sKG-Lt~eEI~~ 54 (70)
T 2w84_A 32 QSPLATRRAFLKKKG-LTDEEIDM 54 (70)
T ss_dssp GSCHHHHHHHHHHTT-CCHHHHHH
T ss_pred hCCHHHHHHHHHHcC-CCHHHHHH
Confidence 467888899999999 58876643
No 99
>1pyo_A Caspase-2; apoptosis, caspase, alpha-beta, thiol protease, hydrolase-HY inhibitor complex; 1.65A {Homo sapiens} SCOP: c.17.1.1 PDB: 3rjm_A* 2p2c_A 3r5j_A 3r6g_A 3r6l_A 3r7b_A 3r7n_A 3r7s_A
Probab=36.51 E-value=85 Score=26.55 Aligned_cols=71 Identities=10% Similarity=0.024 Sum_probs=45.1
Q ss_pred EEEEEEcCCcceeeecc-c-c--cCCcCHHHHHhhcCeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEe
Q 016909 196 VIFICRNNGWAISTPIS-D-Q--FRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALT 266 (380)
Q Consensus 196 vi~vv~NN~~~i~~~~~-~-~--~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t 266 (380)
+.+|++|..|...+... + . .....+.+.++.+|+.+....--+..++.+.+++..++.......++|.+..
T Consensus 35 ~aLIinn~~F~~~~~l~~R~Gt~~D~~~L~~~f~~LgF~V~~~~dlt~~em~~~l~~~~~~~dh~~~dc~vv~il 109 (167)
T 1pyo_A 35 LALVLSNVHFTGEKELEFRSGGDVDHSTLVTLFKLLGYDVHVLCDQTAQEMQEKLQNFAQLPAHRVTDSCIVALL 109 (167)
T ss_dssp EEEEEECCCCCSSSCSCCCTTHHHHHHHHHHHHHHTTEEEEEEESCCHHHHHHHHHHHHTCGGGGTSSEEEEEEE
T ss_pred EEEEEeCcccCCCCCCccCCCcHHHHHHHHHHHHHCCCEEEEeeCCCHHHHHHHHHHhhhhhhccCCCEEEEEeC
Confidence 66666666664321111 1 1 1123577889999999998887888999999988765222245567765544
No 100
>3ff5_A PEX14P, peroxisomal biogenesis factor 14; protein import, peroxin, 3 helices bundle, protein transport; HET: DPW; 1.80A {Rattus norvegicus}
Probab=34.85 E-value=43 Score=23.10 Aligned_cols=25 Identities=16% Similarity=0.264 Sum_probs=20.0
Q ss_pred CChHHHHHHHHHHCCCCCHHHHHHHH
Q 016909 294 QDPVTRFRKWIESNGWWNGDIESELR 319 (380)
Q Consensus 294 ~DPi~~~~~~L~~~g~~t~~~~~~i~ 319 (380)
.-|+..=.++|..+| +|++|+++.-
T Consensus 27 ~sp~~~K~~FL~sKG-Lt~~EI~~Al 51 (54)
T 3ff5_A 27 QSPLATRRAFLKKKG-LTDEEIDLAF 51 (54)
T ss_dssp GSCHHHHHHHHHHTT-CCHHHHHHHH
T ss_pred cCCHHHHHHHHHHcC-CCHHHHHHHH
Confidence 568888889999999 5998886543
No 101
>1use_A VAsp, vasodilator-stimulated phosphoprotein; signaling protein, null; 1.3A {Homo sapiens} SCOP: h.1.29.1 PDB: 1usd_A
Probab=33.98 E-value=73 Score=21.08 Aligned_cols=18 Identities=11% Similarity=0.296 Sum_probs=8.4
Q ss_pred hHHHHHHhCCChHHHHHHHH
Q 016909 285 DEIEWWRTTQDPVTRFRKWI 304 (380)
Q Consensus 285 ~e~~~~~~~~DPi~~~~~~L 304 (380)
.+++.|+ .+-+.-+|+.|
T Consensus 7 ~dle~~K--qEIL~E~RkEl 24 (45)
T 1use_A 7 SDLQRVK--QELLEEVKKEL 24 (45)
T ss_dssp HHHHHHH--HHHHHHHHHHH
T ss_pred HHHHHHH--HHHHHHHHHHH
Confidence 4455553 34444444444
No 102
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=30.23 E-value=1.8e+02 Score=23.68 Aligned_cols=59 Identities=15% Similarity=0.131 Sum_probs=35.8
Q ss_pred cCCCEEEEEEcCCcceeeecccccCCcCHHHHHhhcCeeEEEEeC-CCHHHHHHHHHHHHHHhh
Q 016909 192 TEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDG-NDALAIYSAVHAAREMAI 254 (380)
Q Consensus 192 ~~Lpvi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~G~~~~~VdG-~D~~av~~a~~~A~~~ar 254 (380)
.+.|+|+|.+--.. ............+.++.+|++.+.+.. .+-..|.+.+...++.++
T Consensus 126 ~~~piilv~nK~Dl----~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~g~gv~~lf~~l~~~i~ 185 (187)
T 3c5c_A 126 RSIPALLLGNKLDM----AQYRQVTKAEGVALAGRFGCLFFEVSACLDFEHVQHVFHEAVREAR 185 (187)
T ss_dssp CCCCEEEEEECGGG----GGGCSSCHHHHHHHHHHHTCEEEECCSSSCSHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEEECcch----hhcCccCHHHHHHHHHHcCCcEEEEeecCccccHHHHHHHHHHHHh
Confidence 36787776642221 111222223455678888999999888 666667777766665543
No 103
>4ds3_A Phosphoribosylglycinamide formyltransferase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.85A {Brucella melitensis BV}
Probab=29.06 E-value=1.7e+02 Score=25.61 Aligned_cols=82 Identities=22% Similarity=0.255 Sum_probs=47.1
Q ss_pred CceeEEEeCccccCcchHHHHHHHHHHc-CCC--EEEEEEcCCcceeeecccccCCcCHHHHHhhcCeeEEEEeC---CC
Q 016909 165 DACAVTYFGDGGTSEGDFHAALNFSAVT-EAP--VIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDG---ND 238 (380)
Q Consensus 165 ~~~vv~~~GDG~~~eG~~~Eal~~A~~~-~Lp--vi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~G~~~~~VdG---~D 238 (380)
.+++|.+.|.|+.. +++--+... ++| |+.|+.|+.-+ .-.++|+.+|+|++.++- .+
T Consensus 8 ~ri~vl~SG~gsnl-----~all~~~~~~~l~~~I~~Visn~~~a------------~~l~~A~~~gIp~~~~~~~~~~~ 70 (209)
T 4ds3_A 8 NRVVIFISGGGSNM-----EALIRAAQAPGFPAEIVAVFSDKAEA------------GGLAKAEAAGIATQVFKRKDFAS 70 (209)
T ss_dssp EEEEEEESSCCHHH-----HHHHHHHTSTTCSEEEEEEEESCTTC------------THHHHHHHTTCCEEECCGGGSSS
T ss_pred ccEEEEEECCcHHH-----HHHHHHHHcCCCCcEEEEEEECCccc------------HHHHHHHHcCCCEEEeCccccCC
Confidence 46788888887763 444444443 354 77777765211 124789999999998863 23
Q ss_pred HHHHHHHHHHHHHHhhccCCcEEEEEEee
Q 016909 239 ALAIYSAVHAAREMAIGEGRPILIEALTY 267 (380)
Q Consensus 239 ~~av~~a~~~A~~~ar~~~gP~lIe~~t~ 267 (380)
..+..+.+.+.++. -+|=+|.+.-|
T Consensus 71 r~~~d~~~~~~l~~----~~~Dliv~agy 95 (209)
T 4ds3_A 71 KEAHEDAILAALDV----LKPDIICLAGY 95 (209)
T ss_dssp HHHHHHHHHHHHHH----HCCSEEEESSC
T ss_pred HHHHHHHHHHHHHh----cCCCEEEEecc
Confidence 33333444444432 24555544443
No 104
>3kcq_A Phosphoribosylglycinamide formyltransferase; structural genomics, niaid, seattle structural center for infectious disease, ssgcid; 2.20A {Anaplasma phagocytophilum} SCOP: c.65.1.0
Probab=29.00 E-value=96 Score=27.38 Aligned_cols=56 Identities=23% Similarity=0.289 Sum_probs=35.5
Q ss_pred CCceeEEEeCccccCcchHHHHHHHHHHc-CCC--EEEEEEcCCcceeeecccccCCcCHHHHHhhcCeeEEEEeC
Q 016909 164 KDACAVTYFGDGGTSEGDFHAALNFSAVT-EAP--VIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDG 236 (380)
Q Consensus 164 ~~~~vv~~~GDG~~~eG~~~Eal~~A~~~-~Lp--vi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~G~~~~~VdG 236 (380)
+.+++|.+.|.|+.. +++--+... ++| |+.|+.|+.-+ .-.++|+.+|+|++.++-
T Consensus 8 ~~ri~vl~SG~gsnl-----~all~~~~~~~~~~~I~~Vis~~~~a------------~~l~~A~~~gIp~~~~~~ 66 (215)
T 3kcq_A 8 ELRVGVLISGRGSNL-----EALAKAFSTEESSVVISCVISNNAEA------------RGLLIAQSYGIPTFVVKR 66 (215)
T ss_dssp CEEEEEEESSCCHHH-----HHHHHHTCCC-CSEEEEEEEESCTTC------------THHHHHHHTTCCEEECCB
T ss_pred CCEEEEEEECCcHHH-----HHHHHHHHcCCCCcEEEEEEeCCcch------------HHHHHHHHcCCCEEEeCc
Confidence 346788888887763 444444433 344 77777765211 124789999999998764
No 105
>3hht_B NitrIle hydratase beta subunit; alpha and beta proteins (A+B), lyase; 1.16A {Geobacillus pallidus} SCOP: b.34.4.4 PDB: 2dpp_B 1v29_B
Probab=28.06 E-value=1.1e+02 Score=27.37 Aligned_cols=29 Identities=10% Similarity=0.074 Sum_probs=24.2
Q ss_pred HHHHHhCCChHHHHHHHHHHCCCCCHHHHHHHHHH
Q 016909 287 IEWWRTTQDPVTRFRKWIESNGWWNGDIESELRSS 321 (380)
Q Consensus 287 ~~~~~~~~DPi~~~~~~L~~~g~~t~~~~~~i~~~ 321 (380)
+++|- ..+.+.|+++|++|++|+++..++
T Consensus 73 Ye~WL------~ale~lLvekGvit~~EL~~r~~~ 101 (229)
T 3hht_B 73 YGHWI------ATVAYNLVDTGVLDEKELDERTEV 101 (229)
T ss_dssp HHHHH------HHHHHHHHHTTSSCHHHHHHHHHH
T ss_pred HHHHH------HHHHHHHHHcCCCCHHHHHHHHHh
Confidence 67783 469999999999999999887665
No 106
>2h54_A Caspase-1; allosteric site, dimer interface, hydrolase; HET: PHQ; 1.80A {Homo sapiens} PDB: 1rwm_A* 1rwk_A* 1rwo_A* 1rwp_A* 1rwv_A* 1rww_A* 1rwn_A* 2h48_A* 2h4w_A* 1rwx_A* 2hbq_A* 2hby_A* 1ibc_A 3d6m_A* 2h4y_A* 2h51_A* 3d6f_A* 3d6h_A* 2hbz_A* 2hbr_A* ...
Probab=27.76 E-value=1e+02 Score=26.32 Aligned_cols=69 Identities=10% Similarity=-0.005 Sum_probs=42.2
Q ss_pred CEEEEEEcCCcceeeecccc--cCCcCHHHHHhhcCeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEE
Q 016909 195 PVIFICRNNGWAISTPISDQ--FRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEA 264 (380)
Q Consensus 195 pvi~vv~NN~~~i~~~~~~~--~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~ 264 (380)
.+.+||.|..|.-. +.... .....+.+.++.+|+.+....--+..++.+++++..++....+..+++-+
T Consensus 44 g~ALIInn~~f~~~-~~R~G~~~Da~~L~~~f~~LgF~V~~~~dlt~~em~~~l~~f~~~~d~~~~d~~v~~ 114 (178)
T 2h54_A 44 RLALIICNEEFDSI-PRRTGAEVDITGMTMLLQNLGYSVDVKKNLTASDMTTELEAFAHRPEHKTSDSTFLV 114 (178)
T ss_dssp CEEEEEECCCCSSS-CCCTTHHHHHHHHHHHHHHTTCEEEEEESCCHHHHHHHHHHHHTCGGGGGCSCEEEE
T ss_pred CEEEEEehhhcCCC-ccCCCCHHHHHHHHHHHHHCCCEEEEecCCCHHHHHHHHHHHHhhhhcCCCCEEEEE
Confidence 36677777777421 11101 11235778889999999988877889999999886542211234455444
No 107
>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding, apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A
Probab=27.47 E-value=36 Score=25.56 Aligned_cols=34 Identities=18% Similarity=0.179 Sum_probs=25.5
Q ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
Q 016909 297 VTRFRKWIESNGWWNGDIESELRSSVRKQILHALQ 331 (380)
Q Consensus 297 i~~~~~~L~~~g~~t~~~~~~i~~~~~~~v~~a~~ 331 (380)
+..+-.+|.++|++|+++.+.|+++ ...-+.+.+
T Consensus 24 v~~lld~L~~~~vlt~~~~e~I~~~-~t~~~kar~ 57 (94)
T 2p1h_A 24 TSYIMDHMISDGFLTISEEEKVRNE-PTQQQRAAM 57 (94)
T ss_dssp HHHHHHHHHHHTSSCHHHHHHHHTS-SSHHHHHHH
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHcC-CChHHHHHH
Confidence 5568889999999999999999886 333334433
No 108
>3hbm_A UDP-sugar hydrolase; PSEG; 1.80A {Campylobacter jejuni subsp} PDB: 3hbn_A*
Probab=25.63 E-value=1.8e+02 Score=26.58 Aligned_cols=71 Identities=14% Similarity=0.134 Sum_probs=42.1
Q ss_pred EEEeCcccc--CcchHHHHHHHHHHcCCCEEEEEEcCCcceeeec---ccccCCcC---HHHHHhhcCeeEEEEeCCCHH
Q 016909 169 VTYFGDGGT--SEGDFHAALNFSAVTEAPVIFICRNNGWAISTPI---SDQFRSDG---AVVKGRAYGVRSIRVDGNDAL 240 (380)
Q Consensus 169 v~~~GDG~~--~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~i~~~~---~~~~~~~~---~~~~a~a~G~~~~~VdG~D~~ 240 (380)
|+|--||+. ..|.+.-+|.+|..++ .+.|+|.+..-.+.... -......+ +.+..+..+...+-+|..+..
T Consensus 3 i~ir~Da~~~IG~GHvmRcl~LA~~l~-~v~F~~~~~~~~~~~~~g~~v~~l~~~d~~~~~~~l~~~~~d~lIvD~Y~~~ 81 (282)
T 3hbm_A 3 VLFRSDSSSQIGFGHIKRDLVLAKQYS-DVSFACLPLEGSLIDEIPYPVYELSSESIYELINLIKEEKFELLIIDHYGIS 81 (282)
T ss_dssp EEEEECCBTTTBSHHHHHHHHHHTTCS-SEEEEECCCTTCCGGGCCSCEEECSSSCHHHHHHHHHHHTCSEEEEECTTCC
T ss_pred EEEEEecCCCccccHHHHHHHHHHHHH-hCEEEEecCcHhHHHHCCCeEEEcCccCHHHHHHHHHhCCCCEEEEECCCCC
Confidence 566778876 5788889999999888 99999865421110000 00011112 334445567777888865543
No 109
>3av3_A Phosphoribosylglycinamide formyltransferase; structural genomics, riken structural genomics/proteomics in RSGI, rossmann fold; HET: MSE; 1.70A {Geobacillus kaustophilus}
Probab=25.56 E-value=2.4e+02 Score=24.54 Aligned_cols=82 Identities=12% Similarity=0.061 Sum_probs=45.8
Q ss_pred ceeEEEeCccccCcchHHHHHHHHHHcCC--CEEEEEEcCCcceeeecccccCCcCHHHHHhhcCeeEEEEeCC---CHH
Q 016909 166 ACAVTYFGDGGTSEGDFHAALNFSAVTEA--PVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGN---DAL 240 (380)
Q Consensus 166 ~~vv~~~GDG~~~eG~~~Eal~~A~~~~L--pvi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~G~~~~~VdG~---D~~ 240 (380)
+++|++.|-|++.+- .+......++ .++.|+.|+.- ....++|+.+|+|++.++-. +..
T Consensus 5 ki~vl~sG~g~~~~~----~l~~l~~~~l~~~I~~Vit~~~~------------~~v~~~A~~~gIp~~~~~~~~~~~~~ 68 (212)
T 3av3_A 5 RLAVFASGSGTNFQA----IVDAAKRGDLPARVALLVCDRPG------------AKVIERAARENVPAFVFSPKDYPSKA 68 (212)
T ss_dssp EEEEECCSSCHHHHH----HHHHHHTTCCCEEEEEEEESSTT------------CHHHHHHHHTTCCEEECCGGGSSSHH
T ss_pred EEEEEEECCcHHHHH----HHHHHHhCCCCCeEEEEEeCCCC------------cHHHHHHHHcCCCEEEeCcccccchh
Confidence 577888888876432 2222222333 46777766421 13568899999999987632 333
Q ss_pred HHHHHHHHHHHHhhccCCcEEEEEEee
Q 016909 241 AIYSAVHAAREMAIGEGRPILIEALTY 267 (380)
Q Consensus 241 av~~a~~~A~~~ar~~~gP~lIe~~t~ 267 (380)
+..+.+.+.++ .-+|=+|.+.-|
T Consensus 69 ~~~~~~~~~l~----~~~~Dliv~a~y 91 (212)
T 3av3_A 69 AFESEILRELK----GRQIDWIALAGY 91 (212)
T ss_dssp HHHHHHHHHHH----HTTCCEEEESSC
T ss_pred hhHHHHHHHHH----hcCCCEEEEchh
Confidence 33333434333 235666655554
No 110
>1abz_A Alpha-T-alpha, ATA; de novo design, helix-turn-helix, peptide; HET: SIN; NMR {} SCOP: k.15.1.1
Probab=25.47 E-value=59 Score=20.09 Aligned_cols=27 Identities=11% Similarity=0.117 Sum_probs=22.7
Q ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHH
Q 016909 301 RKWIESNGWWNGDIESELRSSVRKQIL 327 (380)
Q Consensus 301 ~~~L~~~g~~t~~~~~~i~~~~~~~v~ 327 (380)
-+.|.++|.-+..++.++++..+++|.
T Consensus 12 lqaleargtdsnaelrameaklkaeiq 38 (40)
T 1abz_A 12 LQALEARGTDSNAELRAMEAKLKAEIQ 38 (40)
T ss_dssp HHHHHHTCSSCSSHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCCchHHHHHHHHHHHHHHh
Confidence 356778999999999999999988875
No 111
>2pju_A Propionate catabolism operon regulatory protein; structural genomics, PRPR, transcriptional regulation, PSI- 2, protein structure initiative; 2.10A {Escherichia coli} SCOP: c.92.3.1
Probab=25.17 E-value=1.3e+02 Score=26.73 Aligned_cols=83 Identities=12% Similarity=-0.027 Sum_probs=54.1
Q ss_pred eEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcceeeec--------ccccCCcCHHHHHhhcCeeEEEEeCCCH
Q 016909 168 AVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPI--------SDQFRSDGAVVKGRAYGVRSIRVDGNDA 239 (380)
Q Consensus 168 vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~i~~~~--------~~~~~~~~~~~~a~a~G~~~~~VdG~D~ 239 (380)
-|+++|=+.... +.-.++...++++.+...++...+..-. .-.....-..+.|+.+|++++.+.+ .
T Consensus 108 kIavVg~~~~~~----~~~~i~~ll~~~i~~~~~~~~ee~~~~i~~l~~~G~~vVVG~~~~~~~A~~~Gl~~vlI~s--~ 181 (225)
T 2pju_A 108 SIGVVTYQETIP----ALVAFQKTFNLRLDQRSYITEEDARGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYS--A 181 (225)
T ss_dssp CEEEEEESSCCH----HHHHHHHHHTCCEEEEEESSHHHHHHHHHHHHHTTCCEEEESHHHHHHHHHTTSEEEESSC--H
T ss_pred cEEEEeCchhhh----HHHHHHHHhCCceEEEEeCCHHHHHHHHHHHHHCCCCEEECCHHHHHHHHHcCCcEEEECC--H
Confidence 455555555533 3456778889998887776653221110 0011222356899999999999994 6
Q ss_pred HHHHHHHHHHHHHhhcc
Q 016909 240 LAIYSAVHAAREMAIGE 256 (380)
Q Consensus 240 ~av~~a~~~A~~~ar~~ 256 (380)
+++..|+.+|++-++..
T Consensus 182 eSI~~Ai~eA~~l~~~~ 198 (225)
T 2pju_A 182 ATVRQAFSDALDMTRMS 198 (225)
T ss_dssp HHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999998766553
No 112
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=25.11 E-value=1.9e+02 Score=23.04 Aligned_cols=61 Identities=3% Similarity=0.067 Sum_probs=37.4
Q ss_pred cCCCEEEEEEcCCcceeeecccccCCcCHHHHHhhcCeeEEEEeCCCHHHHHHHHHHHHHHhhcc
Q 016909 192 TEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGE 256 (380)
Q Consensus 192 ~~Lpvi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~ 256 (380)
.+.|+|+|++--.. ............+.++.+|++.+.+...+-..+.+.+....+.+...
T Consensus 110 ~~~p~ilv~nK~Dl----~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~ 170 (181)
T 3t5g_A 110 VQIPIMLVGNKKDL----HMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILEAEKM 170 (181)
T ss_dssp --CCEEEEEECTTC----TTTCCSCHHHHHHHHHHTTCEEEECCTTSHHHHHHHHHHHHHHHHTC
T ss_pred CCCCEEEEEECccc----hhcceecHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHHHHHHHHHh
Confidence 36688777642221 11222223345577888999999998877777777777766655443
No 113
>3tqr_A Phosphoribosylglycinamide formyltransferase; purines, pyrimidines, nucleosides, nucleotides; HET: NHE; 1.97A {Coxiella burnetii} SCOP: c.65.1.0
Probab=24.75 E-value=2.1e+02 Score=25.13 Aligned_cols=81 Identities=12% Similarity=0.081 Sum_probs=45.7
Q ss_pred ceeEEEeCccccCcchHHHHHHHHHHcCCC--EEEEEEcCCcceeeecccccCCcCHHHHHhhcCeeEEEEeCC---CHH
Q 016909 166 ACAVTYFGDGGTSEGDFHAALNFSAVTEAP--VIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGN---DAL 240 (380)
Q Consensus 166 ~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lp--vi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~G~~~~~VdG~---D~~ 240 (380)
+++|.+.|.|+. .+++--+...+++ |+.|+.|+.=+ .-.++|+.+|+|++.++-. +-.
T Consensus 7 riavl~SG~Gsn-----l~all~~~~~~~~~eI~~Vis~~~~a------------~~~~~A~~~gIp~~~~~~~~~~~r~ 69 (215)
T 3tqr_A 7 PIVVLISGNGTN-----LQAIIGAIQKGLAIEIRAVISNRADA------------YGLKRAQQADIPTHIIPHEEFPSRT 69 (215)
T ss_dssp EEEEEESSCCHH-----HHHHHHHHHTTCSEEEEEEEESCTTC------------HHHHHHHHTTCCEEECCGGGSSSHH
T ss_pred EEEEEEeCCcHH-----HHHHHHHHHcCCCCEEEEEEeCCcch------------HHHHHHHHcCCCEEEeCccccCchh
Confidence 456666787665 3555555554454 77777764310 1147899999999988632 223
Q ss_pred HHHHHHHHHHHHhhccCCcEEEEEEee
Q 016909 241 AIYSAVHAAREMAIGEGRPILIEALTY 267 (380)
Q Consensus 241 av~~a~~~A~~~ar~~~gP~lIe~~t~ 267 (380)
+..+.+.+.++ .-+|=+|.+.-|
T Consensus 70 ~~d~~~~~~l~----~~~~Dliv~agy 92 (215)
T 3tqr_A 70 DFESTLQKTID----HYDPKLIVLAGF 92 (215)
T ss_dssp HHHHHHHHHHH----TTCCSEEEESSC
T ss_pred HhHHHHHHHHH----hcCCCEEEEccc
Confidence 33333434433 245655555444
No 114
>3cf4_G Acetyl-COA decarboxylase/synthase epsilon subunit; methanomicrobia, iron-nikel-sulfur, 4Fe-NI-4S, oxidoreductas; 2.00A {Methanosarcina barkeri}
Probab=22.72 E-value=65 Score=26.99 Aligned_cols=33 Identities=9% Similarity=0.107 Sum_probs=27.1
Q ss_pred ceeEEEeCccccCcchHHHHHHHHHHcCCCEEE
Q 016909 166 ACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIF 198 (380)
Q Consensus 166 ~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~ 198 (380)
++.+.++|-|....+...|...+|...++||+.
T Consensus 35 krPvil~G~g~~~~~a~~~l~~lae~~~iPV~~ 67 (170)
T 3cf4_G 35 KRPLLMVGTLALDPELLDRVVKISKAANIPIAA 67 (170)
T ss_dssp SSEEEEECSTTCCHHHHHHHHHHHHHHTCCEEE
T ss_pred CCCEEEECCCccchhHHHHHHHHHHHhCCCEEE
Confidence 467788898888777777888899999999864
No 115
>1m3s_A Hypothetical protein YCKF; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.95A {Bacillus subtilis} SCOP: c.80.1.3 PDB: 1viv_A
Probab=22.66 E-value=1.5e+02 Score=24.52 Aligned_cols=18 Identities=11% Similarity=0.001 Sum_probs=11.6
Q ss_pred HHHHHhhcCeeEEEEeCC
Q 016909 220 AVVKGRAYGVRSIRVDGN 237 (380)
Q Consensus 220 ~~~~a~a~G~~~~~VdG~ 237 (380)
..+.++.-|.+++.+.++
T Consensus 98 ~~~~ak~~g~~vi~IT~~ 115 (186)
T 1m3s_A 98 TAAKAKSLHGIVAALTIN 115 (186)
T ss_dssp HHHHHHHTTCEEEEEESC
T ss_pred HHHHHHHCCCEEEEEECC
Confidence 456666677777766654
No 116
>1x0u_A Hypothetical methylmalonyl-COA decarboxylase ALPH; lyase; 2.20A {Sulfolobus tokodaii}
Probab=22.64 E-value=75 Score=32.10 Aligned_cols=40 Identities=23% Similarity=0.213 Sum_probs=24.6
Q ss_pred ceeEEEeCccccCcch--------HHHHHHHHHHcCCCEEEEEEcCCc
Q 016909 166 ACAVTYFGDGGTSEGD--------FHAALNFSAVTEAPVIFICRNNGW 205 (380)
Q Consensus 166 ~~vv~~~GDG~~~eG~--------~~Eal~~A~~~~Lpvi~vv~NN~~ 205 (380)
+.|+++.-|..+.-|. +.-++.+|...++|+|.++++.+-
T Consensus 91 r~v~v~a~D~t~~gGS~g~~~~~Ki~ra~e~A~~~~~P~I~l~~SGGa 138 (522)
T 1x0u_A 91 RTVFAYAQDFTVLGGSLGETHANKIVRAYELALKVGAPVVGINDSGGA 138 (522)
T ss_dssp EEEEEEEECTTTGGGCBCHHHHHHHHHHHHHHHHHTCCEEEEECCCSB
T ss_pred EEEEEEEecCceeCccccHHHHHHHHHHHHHHHHcCCCEEEEEcCCCC
Confidence 4566666666654444 334566677777777777765543
No 117
>1on3_A Methylmalonyl-COA carboxyltransferase 12S subunit; domain duplication, multienzyme complex, transcarboxylase; HET: MCA; 1.90A {Propionibacterium freudenreichii} SCOP: c.14.1.4 c.14.1.4 PDB: 1on9_A*
Probab=22.55 E-value=85 Score=31.69 Aligned_cols=41 Identities=15% Similarity=0.150 Sum_probs=28.1
Q ss_pred CceeEEEeCccccCcch--------HHHHHHHHHHcCCCEEEEEEcCCc
Q 016909 165 DACAVTYFGDGGTSEGD--------FHAALNFSAVTEAPVIFICRNNGW 205 (380)
Q Consensus 165 ~~~vv~~~GDG~~~eG~--------~~Eal~~A~~~~Lpvi~vv~NN~~ 205 (380)
++.|+++.-|..+.-|. +.-++.+|...++|+|.++++.+-
T Consensus 94 Gr~v~v~a~D~t~~gGS~g~~~~~Ki~ra~e~A~~~~lP~I~l~~SGGA 142 (523)
T 1on3_A 94 GRPVHAASQDFTVMGGSAGETQSTKVVETMEQALLTGTPFLFFYDSGGA 142 (523)
T ss_dssp TEEEEEEEECTTTGGGCBCHHHHHHHHHHHHHHHHHTCCEEEEEEECSB
T ss_pred CEEEEEEEEcCCccCCcCcHHHHHHHHHHHHHHHHcCCCEEEEEcCCCC
Confidence 35677777777765554 334667777888888888886654
No 118
>1jeo_A MJ1247, hypothetical protein MJ1247; RUMP pathway, phosphosugar, 3-hexulose-6-phosphate isomerase structural genomics; HET: CME CIT; 2.00A {Methanocaldococcus jannaschii} SCOP: c.80.1.3
Probab=22.14 E-value=1.9e+02 Score=23.68 Aligned_cols=34 Identities=15% Similarity=0.106 Sum_probs=14.7
Q ss_pred ceeEEEeCccccCcchHHHHHHHHHHcCCCEEEEEE
Q 016909 166 ACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICR 201 (380)
Q Consensus 166 ~~vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~ 201 (380)
.++|++.--|... .+.+++..|...+.++|.|..
T Consensus 84 d~vi~iS~sG~t~--~~~~~~~~ak~~g~~vi~IT~ 117 (180)
T 1jeo_A 84 DLLILISGSGRTE--SVLTVAKKAKNINNNIIAIVC 117 (180)
T ss_dssp CEEEEEESSSCCH--HHHHHHHHHHTTCSCEEEEES
T ss_pred CEEEEEeCCCCcH--HHHHHHHHHHHCCCcEEEEeC
Confidence 3444444444432 234444444444445444443
No 119
>3tbh_A O-acetyl serine sulfhydrylase; cysteine synthase, type II PLP dependent enzyme, serine ACET transferase; HET: LLP; 1.68A {Leishmania donovani} PDB: 3spx_A* 3t4p_A* 4air_A*
Probab=21.83 E-value=3.1e+02 Score=25.34 Aligned_cols=42 Identities=17% Similarity=0.114 Sum_probs=26.1
Q ss_pred HHHHH-HHHcCCCEEEEEEcCCcceeeecccccCCcCHHHHHhhcCeeEEEEeCC
Q 016909 184 AALNF-SAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGN 237 (380)
Q Consensus 184 Eal~~-A~~~~Lpvi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~G~~~~~VdG~ 237 (380)
-++.. |+..++|+++++-.+- + ..-.+..++||.+++.+++.
T Consensus 85 ~alA~aa~~~G~~~~iv~p~~~-----~-------~~k~~~~~~~GA~V~~~~~~ 127 (334)
T 3tbh_A 85 VSLAHLGAIRGYKVIITMPESM-----S-------LERRCLLRIFGAEVILTPAA 127 (334)
T ss_dssp HHHHHHHHHHTCEEEEEEETTS-----C-------HHHHHHHHHTTCEEEEECGG
T ss_pred HHHHHHHHHhCCCEEEEECCCC-----C-------HHHHHHHHHCCCEEEEECCC
Confidence 34444 4467999888775441 0 11235667888888888754
No 120
>2x24_A Acetyl-COA carboxylase; fatty acid biosynthesis, ligase, lipid synthesis; HET: X24; 2.40A {Bos taurus} PDB: 3ff6_A* 3tdc_A*
Probab=21.79 E-value=48 Score=35.28 Aligned_cols=44 Identities=18% Similarity=0.234 Sum_probs=34.3
Q ss_pred CCceeEEEeCccccCcchH--------HHHHHHHHHcCCCEEEEEEcCCcce
Q 016909 164 KDACAVTYFGDGGTSEGDF--------HAALNFSAVTEAPVIFICRNNGWAI 207 (380)
Q Consensus 164 ~~~~vv~~~GDG~~~eG~~--------~Eal~~A~~~~Lpvi~vv~NN~~~i 207 (380)
.++.|+++.-|-.++-|.+ .-++.+|...++|+|++++|.+-.+
T Consensus 119 ~Gr~vvVianD~t~~gGS~g~~~~~K~~ra~elA~~~glP~I~l~dsgGARi 170 (793)
T 2x24_A 119 EGRDIILISNDITFRIGSFGPGEDLLYLRASELARAEGIPRVYLAANSGARI 170 (793)
T ss_dssp TCEEEEEEEECSSGGGGCBCHHHHHHHHHHHHHHHHHTCCEEEEECCCCBCC
T ss_pred CCeEEEEEEECCcccCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEeCCCcCc
Confidence 4567888888877765543 3478889999999999999888655
No 121
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=21.69 E-value=1.6e+02 Score=25.26 Aligned_cols=84 Identities=10% Similarity=0.005 Sum_probs=55.2
Q ss_pred eEEEeCccccCcchHHHHHHHHHHcCCCEEEEEEcCCcceeeecc--------cccCCcCHHHHHhhcCeeEEEEeCCCH
Q 016909 168 AVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPIS--------DQFRSDGAVVKGRAYGVRSIRVDGNDA 239 (380)
Q Consensus 168 vv~~~GDG~~~eG~~~Eal~~A~~~~Lpvi~vv~NN~~~i~~~~~--------~~~~~~~~~~~a~a~G~~~~~VdG~D~ 239 (380)
-++++|=+....| .-.++...++++.+...+|...+..-.. -.....-..+.|+.+|++++.+. ...
T Consensus 96 kIavvg~~~~~~~----~~~~~~ll~~~i~~~~~~~~~e~~~~i~~l~~~G~~vvVG~~~~~~~A~~~Gl~~vli~-sg~ 170 (196)
T 2q5c_A 96 ELALIAYKHSIVD----KHEIEAMLGVKIKEFLFSSEDEITTLISKVKTENIKIVVSGKTVTDEAIKQGLYGETIN-SGE 170 (196)
T ss_dssp EEEEEEESSCSSC----HHHHHHHHTCEEEEEEECSGGGHHHHHHHHHHTTCCEEEECHHHHHHHHHTTCEEEECC-CCH
T ss_pred cEEEEeCcchhhH----HHHHHHHhCCceEEEEeCCHHHHHHHHHHHHHCCCeEEECCHHHHHHHHHcCCcEEEEe-cCH
Confidence 4566666666554 2457778889877777766543221110 01112235689999999999987 348
Q ss_pred HHHHHHHHHHHHHhhcc
Q 016909 240 LAIYSAVHAAREMAIGE 256 (380)
Q Consensus 240 ~av~~a~~~A~~~ar~~ 256 (380)
+++..|+.+|++-++..
T Consensus 171 eSI~~Ai~eA~~l~~~~ 187 (196)
T 2q5c_A 171 ESLRRAIEEALNLIEVR 187 (196)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 89999999998776553
No 122
>3da8_A Probable 5'-phosphoribosylglycinamide formyltransferase PURN; glycinamide ribonucleotide transformylase, structure; 1.30A {Mycobacterium tuberculosis} PDB: 3dcj_A*
Probab=21.65 E-value=3.3e+02 Score=23.78 Aligned_cols=80 Identities=20% Similarity=0.100 Sum_probs=45.3
Q ss_pred ceeEEEeCccccCcchHHHHHHHHHHcCC--CEEEEEEcCCcceeeecccccCCcCHHHHHhhcCeeEEEEeC---CCHH
Q 016909 166 ACAVTYFGDGGTSEGDFHAALNFSAVTEA--PVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDG---NDAL 240 (380)
Q Consensus 166 ~~vv~~~GDG~~~eG~~~Eal~~A~~~~L--pvi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~G~~~~~VdG---~D~~ 240 (380)
+++|...|-|+. .+++--+...++ .++.|+.|+. + ...++|+.+|+|++.++- .+-.
T Consensus 14 ri~vl~SG~gsn-----l~all~~~~~~~~~eI~~Vis~~~-a------------~~~~~A~~~gIp~~~~~~~~~~~r~ 75 (215)
T 3da8_A 14 RLVVLASGTGSL-----LRSLLDAAVGDYPARVVAVGVDRE-C------------RAAEIAAEASVPVFTVRLADHPSRD 75 (215)
T ss_dssp EEEEEESSCCHH-----HHHHHHHSSTTCSEEEEEEEESSC-C------------HHHHHHHHTTCCEEECCGGGSSSHH
T ss_pred EEEEEEeCChHH-----HHHHHHHHhccCCCeEEEEEeCCc-h------------HHHHHHHHcCCCEEEeCcccccchh
Confidence 455555677664 344544433245 4777777653 1 135789999999999852 1233
Q ss_pred HHHHHHHHHHHHhhccCCcEEEEEEee
Q 016909 241 AIYSAVHAAREMAIGEGRPILIEALTY 267 (380)
Q Consensus 241 av~~a~~~A~~~ar~~~gP~lIe~~t~ 267 (380)
+..+.+.+.++ .-+|=+|.+--|
T Consensus 76 ~~d~~~~~~l~----~~~~Dlivlagy 98 (215)
T 3da8_A 76 AWDVAITAATA----AHEPDLVVSAGF 98 (215)
T ss_dssp HHHHHHHHHHH----TTCCSEEEEEEC
T ss_pred hhhHHHHHHHH----hhCCCEEEEcCc
Confidence 33344444443 245666666555
No 123
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=21.05 E-value=3.4e+02 Score=22.13 Aligned_cols=58 Identities=5% Similarity=0.097 Sum_probs=34.6
Q ss_pred CCCEEEEEEcCCcceeeecccccCCcCHHHHHhhcCeeEEEEeCCCHHHHHHHHHHHHHHhh
Q 016909 193 EAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAI 254 (380)
Q Consensus 193 ~Lpvi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~A~~~ar 254 (380)
+.|+|+|++--.. ..............++.+|++.+.+...+-..+.+.+....+.+.
T Consensus 129 ~~piilv~nK~Dl----~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i~ 186 (201)
T 3oes_A 129 RVPVVLVGNKADL----SPEREVQAVEGKKLAESWGATFMESSARENQLTQGIFTKVIQEIA 186 (201)
T ss_dssp CCCEEEEEECTTC----GGGCCSCHHHHHHHHHHHTCEEEECCTTCHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEEECccC----ccccccCHHHHHHHHHHhCCeEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 5687777643222 111222223345678888999999987766666666666555443
No 124
>3sho_A Transcriptional regulator, RPIR family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 1.80A {Sphaerobacter thermophilus}
Probab=20.81 E-value=2e+02 Score=23.56 Aligned_cols=80 Identities=10% Similarity=0.080 Sum_probs=46.8
Q ss_pred cccCccHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCC-CEEEEEEcCCcceeeecccccCCcCHHH
Q 016909 144 TIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEA-PVIFICRNNGWAISTPISDQFRSDGAVV 222 (380)
Q Consensus 144 ~lG~~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~L-pvi~vv~NN~~~i~~~~~~~~~~~~~~~ 222 (380)
.+|.|.+..++..++.++..-+..+.++.+|+.. +++ .+...+- .+++++...++... .....+
T Consensus 44 i~G~G~S~~~a~~~~~~l~~~g~~~~~~~~~~~~----~~~---~~~~~~~~d~~i~iS~sG~t~~--------~~~~~~ 108 (187)
T 3sho_A 44 VVGMGFSAAVAVFLGHGLNSLGIRTTVLTEGGST----LTI---TLANLRPTDLMIGVSVWRYLRD--------TVAALA 108 (187)
T ss_dssp EECCGGGHHHHHHHHHHHHHTTCCEEEECCCTHH----HHH---HHHTCCTTEEEEEECCSSCCHH--------HHHHHH
T ss_pred EEecCchHHHHHHHHHHHHhcCCCEEEecCCchh----HHH---HHhcCCCCCEEEEEeCCCCCHH--------HHHHHH
Confidence 3555566667777777776666667776645433 121 1222222 36666655443221 234678
Q ss_pred HHhhcCeeEEEEeCCC
Q 016909 223 KGRAYGVRSIRVDGND 238 (380)
Q Consensus 223 ~a~a~G~~~~~VdG~D 238 (380)
.++..|++++.+.++.
T Consensus 109 ~ak~~g~~vi~IT~~~ 124 (187)
T 3sho_A 109 GAAERGVPTMALTDSS 124 (187)
T ss_dssp HHHHTTCCEEEEESCT
T ss_pred HHHHCCCCEEEEeCCC
Confidence 8889999999988654
No 125
>1ugp_B NitrIle hydratase beta subunit; complex, N-butyric acid, non-corrin cobalt, hydration, lyase; HET: BUA; 1.63A {Pseudonocardia thermophila} SCOP: b.34.4.4 PDB: 1ire_B 1ugq_B 1ugr_B 1ugs_B
Probab=20.78 E-value=1e+02 Score=27.63 Aligned_cols=31 Identities=10% Similarity=-0.014 Sum_probs=24.9
Q ss_pred HHHHHhCCChHHHHHHHHHHCCCCCHHHHHHHHHHHH
Q 016909 287 IEWWRTTQDPVTRFRKWIESNGWWNGDIESELRSSVR 323 (380)
Q Consensus 287 ~~~~~~~~DPi~~~~~~L~~~g~~t~~~~~~i~~~~~ 323 (380)
+++|- ..+.+.|+++|++|.+|+++..++..
T Consensus 69 Ye~Wl------~ale~lLvekGvit~~EL~ar~~~~~ 99 (226)
T 1ugp_B 69 YWHWI------RTYIHHGVRTGKIDLEELERRTQYYR 99 (226)
T ss_dssp HHHHH------HHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred HHHHH------HHHHHHHHHcCCCCHHHHHHHHHhhc
Confidence 56783 56999999999999999987755543
No 126
>3ahc_A Phosphoketolase, xylulose 5-phosphate/fructose 6-phosphate phospho; thiamine diphosphate-dependent enzyme, alpha-beta fold; HET: TPP 2PE; 1.70A {Bifidobacterium breve} PDB: 3ahd_A* 3ahe_A* 3ahf_A* 3ahj_A* 3ahi_A* 3ahh_A* 3ahg_A* 3ai7_A*
Probab=20.69 E-value=4.9e+02 Score=27.81 Aligned_cols=100 Identities=7% Similarity=-0.090 Sum_probs=56.3
Q ss_pred cHHHHHHHHHhhhcCCCceeEEEeCccccCc--chHHHH----HHHH-HH----cCC-CEEEEEEcCCccee--eecccc
Q 016909 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSE--GDFHAA----LNFS-AV----TEA-PVIFICRNNGWAIS--TPISDQ 214 (380)
Q Consensus 149 ~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~e--G~~~Ea----l~~A-~~----~~L-pvi~vv~NN~~~i~--~~~~~~ 214 (380)
.+++.|+|+. ++..++... ++|-. ...++. +.++ +. +++ |+++|....+++.. ++++.
T Consensus 503 ~gia~Glal~------G~~~f~~t~-atFl~~~~~a~~q~akwiR~a~a~~~wr~~~~~v~~v~Th~si~~GeDGpTHQ- 574 (845)
T 3ahc_A 503 EGFLEAYLLT------GRHGIWSSY-ESFVHVIDSMLNQHAKWLEATVREIPWRKPISSVNLLVSSHVWRQDHNGFSHQ- 574 (845)
T ss_dssp HHHHHHHHHT------TCEEEEEEE-HHHHGGGHHHHHHHHHHHHHHHHHCTTSCCCBCEEEEEESCGGGCTTTCGGGC-
T ss_pred HHHHHHHHhc------CCCCceecc-hhhhchhhhHHHHHHHHHHhhHHhhhhcccCCceEEEEeCCceeecCCCCCCC-
Confidence 3466677664 233333322 45532 344455 6666 43 467 69999888887654 33322
Q ss_pred cCCcCHHHHHhhc------CeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEE
Q 016909 215 FRSDGAVVKGRAY------GVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIE 263 (380)
Q Consensus 215 ~~~~~~~~~a~a~------G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe 263 (380)
+ ..+.+.+... ++.+++ --|..++..+++.|++. .+.|.++.
T Consensus 575 -~-~e~~d~l~~~r~~~iPn~~V~~--PaDanet~~a~~~al~~---~~~~~v~v 622 (845)
T 3ahc_A 575 -D-PGVTSLLINKTFNNDHVTNIYF--ATDANMLLAISEKCFKS---TNKINAIF 622 (845)
T ss_dssp -C-CTHHHHHGGGCCTTCCCEEEEE--CCSHHHHHHHHHHHHHC---BSCEEEEE
T ss_pred -C-cHHHHHHHHhhccCCCCeEEEe--CCCHHHHHHHHHHHHHc---CCCeEEEE
Confidence 1 2244444443 444444 34888899999888874 44555553
No 127
>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV}
Probab=20.63 E-value=3e+02 Score=25.50 Aligned_cols=53 Identities=9% Similarity=-0.041 Sum_probs=35.2
Q ss_pred CCceeEEEeCccccCcchHHHHHHHHHHcC-CC--EEEEEEcCCcceeeecccccCCcCHHHHHhhcCeeEEEEe
Q 016909 164 KDACAVTYFGDGGTSEGDFHAALNFSAVTE-AP--VIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVD 235 (380)
Q Consensus 164 ~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~-Lp--vi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~G~~~~~Vd 235 (380)
+.+++|...|.|+ ..++|-.+...+ || ++.|+.|+. +...+|+.+|+|++.++
T Consensus 105 ~~ri~vl~Sg~g~-----nl~~ll~~~~~g~l~~~I~~Visn~~--------------~~~~~A~~~gIp~~~~~ 160 (302)
T 3o1l_A 105 KKRVVLMASRESH-----CLADLLHRWHSDELDCDIACVISNHQ--------------DLRSMVEWHDIPYYHVP 160 (302)
T ss_dssp CCEEEEEECSCCH-----HHHHHHHHHHTTCSCSEEEEEEESSS--------------TTHHHHHTTTCCEEECC
T ss_pred CcEEEEEEeCCch-----hHHHHHHHHHCCCCCcEEEEEEECcH--------------HHHHHHHHcCCCEEEcC
Confidence 3456666777664 356666665543 55 777777762 23467999999999984
No 128
>1qtn_A Caspase-8; apoptosis, dithiane-DIOL, caspase, cysteine-protease, hydrol hydrolase inhibitor complex; 1.20A {Homo sapiens} SCOP: c.17.1.1 PDB: 3kjn_A* 3kjq_A* 2y1l_A 2c2z_A 1qdu_A* 1f9e_A*
Probab=20.39 E-value=2.1e+02 Score=23.93 Aligned_cols=48 Identities=10% Similarity=-0.014 Sum_probs=34.6
Q ss_pred cCHHHHHhhcCeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEEEEEEe
Q 016909 218 DGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPILIEALT 266 (380)
Q Consensus 218 ~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t 266 (380)
..+.+.++.+|+.+...+--+..++.+.+++..+. ......++|.+..
T Consensus 58 ~~L~~~f~~LgF~V~~~~dlt~~em~~~l~~~~~~-dh~~~dc~vv~il 105 (164)
T 1qtn_A 58 GALTTTFEELHFEIKPHDDCTVEQIYEILKIYQLM-DHSNMDCFICCIL 105 (164)
T ss_dssp HHHHHHHHHTTCEEEEEESCCHHHHHHHHHHHHHS-CCTTCSCEEEEEE
T ss_pred HHHHHHHHHCCCEEEEecCCCHHHHHHHHHHHHHh-hccCCCEEEEEeC
Confidence 35778899999999988878889999999887432 1134556665543
No 129
>2xhz_A KDSD, YRBH, arabinose 5-phosphate isomerase; lipopolysaccharide biogenesis; 2.60A {Escherichia coli}
Probab=20.39 E-value=1.9e+02 Score=23.71 Aligned_cols=19 Identities=16% Similarity=0.132 Sum_probs=12.6
Q ss_pred CHHHHHhhcCeeEEEEeCC
Q 016909 219 GAVVKGRAYGVRSIRVDGN 237 (380)
Q Consensus 219 ~~~~~a~a~G~~~~~VdG~ 237 (380)
...+.++.-|++++-+.++
T Consensus 114 ~~~~~ak~~g~~vi~IT~~ 132 (183)
T 2xhz_A 114 ALIPVLKRLHVPLICITGR 132 (183)
T ss_dssp HHHHHHHTTTCCEEEEESC
T ss_pred HHHHHHHHCCCCEEEEECC
Confidence 3556677777777777654
No 130
>4aec_A Cysteine synthase, mitochondrial; lyase, cysteine synthesis, assimilatory sulfate reduction, S plant inorganic sulfur uptake; HET: PLP; 2.40A {Arabidopsis thaliana}
Probab=20.37 E-value=3e+02 Score=26.79 Aligned_cols=63 Identities=21% Similarity=0.207 Sum_probs=36.3
Q ss_pred HHHH-HHHcCCCEEEEEEcCCcceeeecccccCCcCHHHHHhhcCeeEEEEeCCCHHHHHHHHHHHHHHhhccCCcEE
Q 016909 185 ALNF-SAVTEAPVIFICRNNGWAISTPISDQFRSDGAVVKGRAYGVRSIRVDGNDALAIYSAVHAAREMAIGEGRPIL 261 (380)
Q Consensus 185 al~~-A~~~~Lpvi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~l 261 (380)
++.+ |+..++|+++|+-.+- ...-.+..++||.+++.+++.+ ...++.+.|.+.+++.++..+
T Consensus 189 AlA~aAa~~Gl~~~IvmP~~~------------s~~k~~~~r~~GAeVv~v~~~~--~~~~a~~~a~el~~~~~~~~~ 252 (430)
T 4aec_A 189 GLAFIAASRGYRLILTMPASM------------SMERRVLLKAFGAELVLTDPAK--GMTGAVQKAEEILKNTPDAYM 252 (430)
T ss_dssp HHHHHHHHHTCEEEEEEETTS------------CHHHHHHHHHTTCEEEEECGGG--HHHHHHHHHHHHHHHSTTEEE
T ss_pred HHHHHHHHhCCEEEEEEcCCC------------CHHHHHHHHHCCCEEEEECCCC--ChHHHHHHHHHHHHhcCCcEE
Confidence 3444 5578999888875431 1123456789999999997432 223344455554444434333
No 131
>3etn_A Putative phosphosugar isomerase involved in capsu formation; YP_209877.1; HET: MSE CMK; 1.70A {Bacteroides fragilis nctc 9343}
Probab=20.11 E-value=1.7e+02 Score=25.30 Aligned_cols=77 Identities=13% Similarity=0.133 Sum_probs=39.5
Q ss_pred ccCccHHHHHHHHHhhhcCCCceeEEEeCccccCcchHHHHHHHHHHcCC-CEEEEEEcCCcceeeecccccCCcCHHHH
Q 016909 145 IATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEA-PVIFICRNNGWAISTPISDQFRSDGAVVK 223 (380)
Q Consensus 145 lG~~~p~AvG~A~A~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~L-pvi~vv~NN~~~i~~~~~~~~~~~~~~~~ 223 (380)
+|.|.+..++..++.++..-+..++++ .|+.+..+. +...+- .+++++...++... .....+.
T Consensus 65 ~G~G~S~~~A~~~~~~l~~lg~~~~~~-~~~~~~~~~-------~~~~~~~DlvI~iS~SG~t~~--------~i~~~~~ 128 (220)
T 3etn_A 65 SGMGKAGQIAMNIATTFCSTGIPSVFL-HPSEAQHGD-------LGILQENDLLLLISNSGKTRE--------IVELTQL 128 (220)
T ss_dssp ECSHHHHHHHHHHHHHHHHTTCCEEEC-CTTGGGBTG-------GGGCCTTCEEEEECSSSCCHH--------HHHHHHH
T ss_pred EEecHHHHHHHHHHHHHHhcCCcEEEe-CCHHHHHhh-------hccCCCCCEEEEEcCCCCCHH--------HHHHHHH
Confidence 455556666666666665444444443 455443221 111122 35666554443211 1245677
Q ss_pred Hhh--cCeeEEEEeCC
Q 016909 224 GRA--YGVRSIRVDGN 237 (380)
Q Consensus 224 a~a--~G~~~~~VdG~ 237 (380)
++. .|++++.+.++
T Consensus 129 ak~~~~Ga~vI~IT~~ 144 (220)
T 3etn_A 129 AHNLNPGLKFIVITGN 144 (220)
T ss_dssp HHHHCTTCEEEEEESC
T ss_pred HHhcCCCCeEEEEECC
Confidence 777 78888877654
Done!