BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 016910
         (380 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2NLV|A Chain A, Crystal Structure Of A Xisi-Like Protein (Ava_3825) From
           Anabaena Variabilis Atcc 29413 At 1.30 A Resolution
 pdb|2NLV|B Chain B, Crystal Structure Of A Xisi-Like Protein (Ava_3825) From
           Anabaena Variabilis Atcc 29413 At 1.30 A Resolution
          Length = 112

 Score = 31.2 bits (69), Expect = 0.89,   Method: Composition-based stats.
 Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 4/51 (7%)

Query: 267 QWLFCCWCSLAQEVRTADYYDVVEGKLCMKQ--TDEN--SQLTLSPLPRED 313
           QW    W  L +  R   ++D+ +GK+ ++Q  TD N   +L    +PRED
Sbjct: 43  QWXNVGWQGLNRIYRCVIHFDIKDGKIWLQQNLTDRNPAEELVXXGVPRED 93


>pdb|3NK3|A Chain A, Crystal Structure Of Full-Length Sperm Receptor Zp3 At 2.6
           A Resolution
 pdb|3NK3|B Chain B, Crystal Structure Of Full-Length Sperm Receptor Zp3 At 2.6
           A Resolution
 pdb|3NK4|A Chain A, Crystal Structure Of Full-Length Sperm Receptor Zp3 At 2.0
           A Resolution
 pdb|3NK4|B Chain B, Crystal Structure Of Full-Length Sperm Receptor Zp3 At 2.0
           A Resolution
          Length = 297

 Score = 28.5 bits (62), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 15/60 (25%), Positives = 33/60 (55%), Gaps = 3/60 (5%)

Query: 272 CWCSLAQEVRTADYYDVVEGKLCM--KQTDENSQLTLSPLPREDGSAQFRLSQTSLSGNN 329
           C  +L+ +  ++ +Y +++   C+   + D+ S   ++P PRED   +FR+     +G+N
Sbjct: 179 CVAALSPDGDSSPHYAIIDFNGCLVDGRVDDTSSAFITPRPRED-VLRFRIDVFRFAGDN 237


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.322    0.137    0.442 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,522,030
Number of Sequences: 62578
Number of extensions: 463048
Number of successful extensions: 608
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 608
Number of HSP's gapped (non-prelim): 6
length of query: 380
length of database: 14,973,337
effective HSP length: 101
effective length of query: 279
effective length of database: 8,652,959
effective search space: 2414175561
effective search space used: 2414175561
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)