BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016910
(380 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9M815|PCR8_ARATH Protein PLANT CADMIUM RESISTANCE 8 OS=Arabidopsis thaliana GN=PCR8
PE=1 SV=2
Length = 190
Score = 42.4 bits (98), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 49/131 (37%), Gaps = 33/131 (25%)
Query: 151 WRGGLFDIWEDIAVSYLSLFFSFCVFGWNMERLGFGNMYVHIATFLLLCTAPFWVFNFAA 210
W GLFD D A + L+ FG E + G M + TF+ L P
Sbjct: 53 WSTGLFDCQADQANAVLTTIVPCVTFGQIAEVMDEGEMTCPLGTFMYLLMMP-------- 104
Query: 211 VNIDNETVREVLKLTGLVLCIFGLLYGGFWRIQMRKRFNLPANNSCCGKPAIADFAQWLF 270
LC ++ G +R +MR++FNL + +D A +
Sbjct: 105 -----------------ALCSHWVM-GSKYREKMRRKFNL-------VEAPYSDCASHVL 139
Query: 271 CCWCSLAQEVR 281
C CSL QE R
Sbjct: 140 CPCCSLCQEYR 150
>sp|Q9M9A5|PCR6_ARATH Protein PLANT CADMIUM RESISTANCE 6 OS=Arabidopsis thaliana GN=PCR6
PE=2 SV=1
Length = 224
Score = 39.7 bits (91), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 33/133 (24%), Positives = 49/133 (36%), Gaps = 37/133 (27%)
Query: 151 WRGGLFDIWEDIAVSYLSLFFSFCVFGWNMERLGFGNMYVHIATFLLLCTAPFWVFNFAA 210
W GLFD D + ++ F F FG E + G A L
Sbjct: 88 WTSGLFDCMNDGENALITCCFPFVTFGQIAEVIDEGATSCGTAGMLY------------- 134
Query: 211 VNIDNETVREVLKLTGLVLCIFGL--LYGGFWRIQMRKRFNLPANNSCCGKPAIADFAQW 268
GL+ C+F + +Y +R ++R ++ LP PA D+
Sbjct: 135 ---------------GLICCLFAIPCVYTCTFRTKLRSKYGLP------DAPA-PDWITH 172
Query: 269 LFCCWCSLAQEVR 281
FC +C+L QE R
Sbjct: 173 CFCEYCALCQEYR 185
>sp|Q8S8T8|PCR10_ARATH Protein PLANT CADMIUM RESISTANCE 10 OS=Arabidopsis thaliana
GN=PCR10 PE=2 SV=1
Length = 190
Score = 38.9 bits (89), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 54/135 (40%), Gaps = 26/135 (19%)
Query: 151 WRGGLFDIWEDIAVSYLSLFFSFCVFGWNMERLGFGNM----YVHIATFLLLCTAPFWVF 206
W G+ ++D+ + LF +FG N E LG G H ++ L+ T +
Sbjct: 47 WSSGICACFDDMQSCCVGLFCPCYIFGKNAELLGSGTFAGPCLTHCISWALVNTICCFAT 106
Query: 207 NFAAVNIDNETVREVLKLTGLVLCIFGLLYGGFWRIQMRKRFNLPANNSCCGKPAIADFA 266
N A L GL C F Y +R +R ++NL + CG DF
Sbjct: 107 NGA--------------LLGLPGC-FVSCYACGYRKSLRAKYNL--QEAPCG-----DFV 144
Query: 267 QWLFCCWCSLAQEVR 281
FC C++ QE R
Sbjct: 145 THFFCHLCAICQEYR 159
>sp|Q8EFU8|Y1867_SHEON UPF0502 protein SO_1867 OS=Shewanella oneidensis (strain MR-1)
GN=SO_1867 PE=3 SV=1
Length = 222
Score = 36.6 bits (83), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 32/62 (51%), Gaps = 11/62 (17%)
Query: 281 RTADYYDVVEGKLCMKQTDENSQLTLSPLPREDGSAQFR-----------LSQTSLSGNN 329
R D+ DV+E + C+KQ E + L+ LPRE G + R +S TSLS ++
Sbjct: 121 RLHDFKDVLEVEACIKQLMERDKPVLTQLPREPGKRECRYTELFSQGSEQVSATSLSADS 180
Query: 330 PG 331
P
Sbjct: 181 PS 182
>sp|A0KVN6|Y1622_SHESA UPF0502 protein Shewana3_1622 OS=Shewanella sp. (strain ANA-3)
GN=Shewana3_1622 PE=3 SV=1
Length = 218
Score = 35.0 bits (79), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 37/76 (48%), Gaps = 9/76 (11%)
Query: 281 RTADYYDVVEGKLCMKQTDENSQLTLSPLPREDGSAQFRLSQTSLSGNNPGFSRIGIGKF 340
R D+ DV+E + C+KQ E + L+ LPRE G + R ++ FS+ G +
Sbjct: 121 RLHDFKDVLEVEACIKQLMERDKPVLAQLPREPGKRECRYTEL--------FSQ-GAEQI 171
Query: 341 SGPSRFSKDKYSPNRQ 356
S S S D + N Q
Sbjct: 172 SAASFTSADAHPLNEQ 187
>sp|Q0HJY5|Y1554_SHESM UPF0502 protein Shewmr4_1554 OS=Shewanella sp. (strain MR-4)
GN=Shewmr4_1554 PE=3 SV=1
Length = 222
Score = 33.5 bits (75), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 11/62 (17%)
Query: 281 RTADYYDVVEGKLCMKQTDENSQLTLSPLPREDGSAQFR-----------LSQTSLSGNN 329
R D+ DV+E + C+KQ E + L+ LPRE G + R ++ SLS ++
Sbjct: 121 RLHDFKDVLEVEACIKQLMERDKPVLAQLPREPGKRECRYAELFSQGAEQINAASLSADS 180
Query: 330 PG 331
P
Sbjct: 181 PS 182
>sp|Q0HW81|Y1629_SHESR UPF0502 protein Shewmr7_1629 OS=Shewanella sp. (strain MR-7)
GN=Shewmr7_1629 PE=3 SV=1
Length = 222
Score = 33.5 bits (75), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 11/62 (17%)
Query: 281 RTADYYDVVEGKLCMKQTDENSQLTLSPLPREDGSAQFRLSQ-----------TSLSGNN 329
R D+ DV+E + C+KQ E + L+ LPRE G + R ++ SLS ++
Sbjct: 121 RLHDFKDVLEVEACIKQLMERDKPVLAQLPREPGKRECRYTELFSQGAEQINAASLSADS 180
Query: 330 PG 331
P
Sbjct: 181 PS 182
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.137 0.443
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 145,921,170
Number of Sequences: 539616
Number of extensions: 6092972
Number of successful extensions: 12663
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 12659
Number of HSP's gapped (non-prelim): 10
length of query: 380
length of database: 191,569,459
effective HSP length: 119
effective length of query: 261
effective length of database: 127,355,155
effective search space: 33239695455
effective search space used: 33239695455
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 62 (28.5 bits)