Query 016910
Match_columns 380
No_of_seqs 161 out of 546
Neff 4.2
Searched_HMMs 29240
Date Mon Mar 25 05:49:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016910.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016910hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1kil_E Complexin I snare-compl 38.4 13 0.00045 27.2 1.6 11 240-250 39-49 (49)
2 3j1r_A Archaeal adhesion filam 34.1 20 0.00067 23.1 1.7 24 72-97 3-26 (26)
3 3rk3_E Complexin-1; snare prot 33.4 18 0.00062 27.6 1.7 14 240-253 42-55 (63)
4 1l4a_E Synaphin A; snare, snar 30.5 21 0.00072 28.3 1.7 14 240-253 46-59 (79)
5 1zbd_B Rabphilin-3A; G protein 21.9 32 0.0011 29.4 1.4 24 272-298 99-122 (134)
6 1v54_L VIIIA, cytochrome C oxi 10.1 80 0.0027 22.7 0.7 25 71-95 20-44 (47)
7 2ks1_B Epidermal growth factor 9.9 2.6E+02 0.009 19.7 3.3 30 68-97 7-36 (44)
8 3arc_J Photosystem II reaction 8.3 2.7E+02 0.0092 19.5 2.8 31 71-101 8-38 (40)
9 3pcv_A Leukotriene C4 synthase 7.9 4.1E+02 0.014 22.9 4.5 21 232-252 17-37 (156)
10 4egd_A Uncharacterized protein 7.3 1.5E+02 0.0052 28.1 1.5 13 241-253 194-206 (260)
No 1
>1kil_E Complexin I snare-complex binding region; helix bound to four helix bundle, membrane protein; 2.30A {Rattus norvegicus} SCOP: h.1.15.1
Probab=38.44 E-value=13 Score=27.19 Aligned_cols=11 Identities=18% Similarity=0.591 Sum_probs=9.9
Q ss_pred HHHHHHHHcCC
Q 016910 240 WRIQMRKRFNL 250 (380)
Q Consensus 240 ~R~qmRkRYgI 250 (380)
.|+.||.||||
T Consensus 39 mRq~IRdKY~i 49 (49)
T 1kil_E 39 MRQGIRDKYGI 49 (49)
T ss_dssp HHHHHHHHHCC
T ss_pred HHHHHHHhcCC
Confidence 69999999997
No 2
>3j1r_A Archaeal adhesion filament core; helical polymer, flagellar filament, cell adhesion, structur protein; 7.50A {Ignicoccus hospitalis}
Probab=34.07 E-value=20 Score=23.14 Aligned_cols=24 Identities=33% Similarity=0.563 Sum_probs=18.2
Q ss_pred CchhhhhHHHHHhhhhHHhHhhhhhc
Q 016910 72 PAIGVGICLSVAVAAPAIAGVYSVIS 97 (380)
Q Consensus 72 P~~~~~~~~~~~~~~~~~Ag~y~~~s 97 (380)
|-.++-+.|.++++++++ +|.|+|
T Consensus 3 piVA~~lLIviav~aaVl--lylW~s 26 (26)
T 3j1r_A 3 PVIATLLLILIAVAAAVL--LYTWVS 26 (26)
T ss_dssp HHHHHHHHHHHHHHHHHH--HHHHHC
T ss_pred hHHHHHHHHHHHHHHHHH--HHHHhC
Confidence 567788888888888774 688775
No 3
>3rk3_E Complexin-1; snare proteins, membrane fusion, membrane protein-exocytosis transport protein complex, membrane protein-exocytosis COMP; 3.50A {Homo sapiens} PDB: 3rl0_g
Probab=33.45 E-value=18 Score=27.61 Aligned_cols=14 Identities=14% Similarity=0.423 Sum_probs=11.1
Q ss_pred HHHHHHHHcCCCCC
Q 016910 240 WRIQMRKRFNLPAN 253 (380)
Q Consensus 240 ~R~qmRkRYgIpGs 253 (380)
.|+.||.||||+--
T Consensus 42 mRQ~IRdKY~ikKk 55 (63)
T 3rk3_E 42 VRQGIRDKYGIKKK 55 (63)
T ss_dssp HHHHHHHHHTCC--
T ss_pred HHHHHHHHhccchh
Confidence 69999999999754
No 4
>1l4a_E Synaphin A; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=30.46 E-value=21 Score=28.35 Aligned_cols=14 Identities=21% Similarity=0.513 Sum_probs=11.2
Q ss_pred HHHHHHHHcCCCCC
Q 016910 240 WRIQMRKRFNLPAN 253 (380)
Q Consensus 240 ~R~qmRkRYgIpGs 253 (380)
.|+.||.||||+--
T Consensus 46 mRq~IRdKY~ikKK 59 (79)
T 1l4a_E 46 MRQTIRDKYGLKKK 59 (79)
T ss_dssp HHHHHHHHHTCC--
T ss_pred HHHHHHHHhccccc
Confidence 69999999999865
No 5
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=21.86 E-value=32 Score=29.40 Aligned_cols=24 Identities=21% Similarity=0.219 Sum_probs=19.2
Q ss_pred hhhHHHHHHHhhhhccccCCeeccccc
Q 016910 272 CWCSLAQEVRTADYYDVVEGKLCMKQT 298 (380)
Q Consensus 272 ~pCALcQE~RElk~~~v~~~~~~~~~~ 298 (380)
+-|.+||+.||++. ..|.||.+..
T Consensus 99 W~C~vC~k~rel~~---kSG~Wf~~~~ 122 (134)
T 1zbd_B 99 WLCKICLEQREVWK---RSGAWFFKGF 122 (134)
T ss_dssp EEEHHHHHHHHHHH---HTSHHHHTSC
T ss_pred eechhhHHHHHHHH---hhhHHHHhcC
Confidence 46899999999987 6788876554
No 6
>1v54_L VIIIA, cytochrome C oxidase polypeptide VIIC; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.6.1 PDB: 1oco_L* 1occ_L* 1ocz_L* 1ocr_L* 1v55_L* 2dyr_L* 2dys_L* 2eij_L* 2eik_L* 2eil_L* 2eim_L* 2ein_L* 2occ_L* 2ybb_W* 2zxw_L* 3abk_L* 3abl_L* 3abm_L* 3ag1_L* 3ag2_L* ...
Probab=10.13 E-value=80 Score=22.65 Aligned_cols=25 Identities=16% Similarity=0.085 Sum_probs=18.5
Q ss_pred CCchhhhhHHHHHhhhhHHhHhhhh
Q 016910 71 RPAIGVGICLSVAVAAPAIAGVYSV 95 (380)
Q Consensus 71 RP~~~~~~~~~~~~~~~~~Ag~y~~ 95 (380)
|+.+...+++++|+++|.++..+-.
T Consensus 20 ~~~~~~~~f~g~GF~~PF~i~~~Ql 44 (47)
T 1v54_L 20 RLLAMMTLFFGSGFAAPFFIVRHQL 44 (47)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 3455566789999999998776543
No 7
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=9.86 E-value=2.6e+02 Score=19.69 Aligned_cols=30 Identities=13% Similarity=0.218 Sum_probs=23.0
Q ss_pred CCCCCchhhhhHHHHHhhhhHHhHhhhhhc
Q 016910 68 RSERPAIGVGICLSVAVAAPAIAGVYSVIS 97 (380)
Q Consensus 68 r~~RP~~~~~~~~~~~~~~~~~Ag~y~~~s 97 (380)
.++=|++|.|+..++.+.+.++.+++.++-
T Consensus 7 ~s~~~~IA~gVVgGv~~~~ii~~~~~~~~R 36 (44)
T 2ks1_B 7 GPKIPSIATGMVGALLLLLVVALGIGLFMR 36 (44)
T ss_dssp CSCSSSSTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcceEEeehhHHHHHHHHHHHHHHHHhh
Confidence 367789999998888887777766666654
No 8
>3arc_J Photosystem II reaction center protein J; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_J* 3a0b_J* 3a0h_J* 2axt_J* 3bz1_J* 3bz2_J* 3kzi_J* 3prq_J* 3prr_J*
Probab=8.34 E-value=2.7e+02 Score=19.54 Aligned_cols=31 Identities=19% Similarity=0.104 Sum_probs=18.5
Q ss_pred CCchhhhhHHHHHhhhhHHhHhhhhhccCCC
Q 016910 71 RPAIGVGICLSVAVAAPAIAGVYSVISPLGK 101 (380)
Q Consensus 71 RP~~~~~~~~~~~~~~~~~Ag~y~~~splg~ 101 (380)
=|-|.+++..+++...-+--=.|-.||=||-
T Consensus 8 iPLWlvgtv~G~~vi~~~giFfyGsYsGlGS 38 (40)
T 3arc_J 8 IPLWIVATVAGMGVIVIVGLFFYGAYAGLGS 38 (40)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHSSSTTS
T ss_pred ccEEeeeeehhhhhhheeeEEEeecccccCC
Confidence 3888888866655444332334566776664
No 9
>3pcv_A Leukotriene C4 synthase; membrane protein, helix bundle, HOMO trimer, MGST, mapeg, LY; HET: GSH LMT; 1.90A {Homo sapiens} PDB: 2pno_A* 3b29_A* 2uui_A* 2uuh_A* 3hkk_A* 3leo_A*
Probab=7.92 E-value=4.1e+02 Score=22.86 Aligned_cols=21 Identities=19% Similarity=0.243 Sum_probs=15.6
Q ss_pred hhhhhhhHHHHHHHHHcCCCC
Q 016910 232 FGLLYGGFWRIQMRKRFNLPA 252 (380)
Q Consensus 232 ~g~lYgg~~R~qmRkRYgIpG 252 (380)
+..++....-.+.|+|||+..
T Consensus 17 l~~~~~s~~V~~~R~k~~V~~ 37 (156)
T 3pcv_A 17 LLQAYFSLQVISARRAFRVSP 37 (156)
T ss_dssp HHHHHHHHHHHHHHHHTTCCT
T ss_pred HHHHHHHHHHHHHHHHcCCCC
Confidence 344455677888999999976
No 10
>4egd_A Uncharacterized protein saouhsc_02783; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.85A {Staphylococcus aureus subsp} PDB: 4eg9_A
Probab=7.30 E-value=1.5e+02 Score=28.14 Aligned_cols=13 Identities=38% Similarity=0.853 Sum_probs=11.4
Q ss_pred HHHHHHHcCCCCC
Q 016910 241 RIQMRKRFNLPAN 253 (380)
Q Consensus 241 R~qmRkRYgIpGs 253 (380)
=.|+|+||+||-.
T Consensus 194 VKQLRkrY~IpT~ 206 (260)
T 4egd_A 194 VQQLRKRYDIPTK 206 (260)
T ss_dssp HHHHHHHSCCCCC
T ss_pred HHHHHHhcCCCCC
Confidence 4689999999977
Done!