Query 016910
Match_columns 380
No_of_seqs 161 out of 546
Neff 4.2
Searched_HMMs 13730
Date Mon Mar 25 05:49:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016910.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/016910hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1fftb2 f.17.2.1 (B:27-117) Cy 17.4 46 0.0033 24.4 3.3 55 40-94 17-87 (91)
2 d1kqfb2 f.23.22.1 (B:246-290) 14.5 45 0.0033 22.3 2.2 21 81-102 17-37 (45)
3 d2q7ra1 f.56.1.1 (A:1-139) Ara 11.5 1.2E+02 0.009 23.7 4.6 20 234-253 23-42 (139)
4 d1e0ea_ a.4.10.1 (A:) N-termin 9.0 56 0.0041 21.7 1.2 24 243-278 21-44 (46)
5 d1zbdb_ g.50.1.1 (B:) Effector 7.5 67 0.0049 24.5 1.3 24 272-298 92-115 (124)
6 d3dtub2 f.17.2.1 (B:30-129) Ba 7.0 3.8E+02 0.028 19.1 5.6 56 39-94 27-96 (100)
7 d1ffva2 d.15.4.2 (A:3-81) Carb 7.0 95 0.0069 22.4 1.8 21 243-263 26-46 (79)
8 d1rm6c2 d.15.4.2 (C:1-81) 4-hy 6.1 1.2E+02 0.0084 22.0 1.9 23 243-265 27-49 (81)
9 d3ehbb2 f.17.2.1 (B:1-107) Bac 6.0 4.8E+02 0.035 18.8 6.0 56 40-95 34-103 (107)
10 d2axtj1 f.23.32.1 (J:7-40) Pho 6.0 2.1E+02 0.015 17.8 2.8 28 72-101 3-32 (34)
No 1
>d1fftb2 f.17.2.1 (B:27-117) Cytochrome O ubiquinol oxidase, subunit II {Escherichia coli [TaxId: 562]}
Probab=17.44 E-value=46 Score=24.41 Aligned_cols=55 Identities=20% Similarity=0.227 Sum_probs=38.3
Q ss_pred chhhHHHHHHHHHHHHHHHHhhhcccCCCCCCCc----------------hhhhhHHHHHhhhhHHhHhhh
Q 016910 40 THMMVVVVLLHVNCFAQYTLCGLNWGYKRSERPA----------------IGVGICLSVAVAAPAIAGVYS 94 (380)
Q Consensus 40 ~hm~~Vv~llh~nc~~Qy~lcgl~wgy~r~~RP~----------------~~~~~~~~~~~~~~~~Ag~y~ 94 (380)
.|+.++.+++-+-.+-+.++..+.|=|||+..+. +.+=+.+.+++++|...++|.
T Consensus 17 L~~~~~~i~~iv~v~V~~~~~~~~~ryR~~~~~~~~~~~~~~n~~lEi~WtiIP~iil~~iav~s~~~~~~ 87 (91)
T d1fftb2 17 LILTAFGLMLIVVIPAILMAVGFAWKYRASNKDAKYSPNWSHSNKVEAVVWTVPILIIIFLAVLTWKTTHA 87 (91)
T ss_dssp HHHHHHHHTTTTTTHHHHHHHTTTTTTTTSTTTCSSCCCCCCCSHHHHHTTHHHHHHHHHHHHHHHHHSCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhheeeeccCCccCCCCcccCCceehhhHHHHHHHHHHHHHHHHHHHHhh
Confidence 4556666667777788999999999999875432 123355677777777777653
No 2
>d1kqfb2 f.23.22.1 (B:246-290) Iron-sulfur subunit of formate dehydrogenase N, transmembrane anchor {Escherichia coli [TaxId: 562]}
Probab=14.46 E-value=45 Score=22.32 Aligned_cols=21 Identities=14% Similarity=0.300 Sum_probs=13.2
Q ss_pred HHHhhhhHHhHhhhhhccCCCC
Q 016910 81 SVAVAAPAIAGVYSVISPLGKD 102 (380)
Q Consensus 81 ~~~~~~~~~Ag~y~~~splg~~ 102 (380)
.+|+++.++||++-+.- .|..
T Consensus 17 ~~~~~~~~~~~~fHYv~-vGPn 37 (45)
T d1kqfb2 17 AAGFIATFAGLIFHYIG-IGPN 37 (45)
T ss_dssp HHHHHHHHHHHHHHHHH-HCCB
T ss_pred HHHHHHHHHHHHHhhhe-eCCC
Confidence 46777888888755443 3444
No 3
>d2q7ra1 f.56.1.1 (A:1-139) Arachidonate 5-lipoxygenase-activating protein, FLAP {Human (Homo sapiens) [TaxId: 9606]}
Probab=11.50 E-value=1.2e+02 Score=23.71 Aligned_cols=20 Identities=5% Similarity=-0.328 Sum_probs=14.8
Q ss_pred hhhhhHHHHHHHHHcCCCCC
Q 016910 234 LLYGGFWRIQMRKRFNLPAN 253 (380)
Q Consensus 234 ~lYgg~~R~qmRkRYgIpGs 253 (380)
..|..+.=.+.|+||+|+--
T Consensus 23 ~~~ls~~Vg~aR~k~~v~~p 42 (139)
T d2q7ra1 23 NGFFAHKVEHESRTQNGRSF 42 (139)
T ss_dssp HHHHHHHHHHHHHHSCCSSC
T ss_pred HHHHHHHHHHHHhCCCCCCC
Confidence 34556677899999999543
No 4
>d1e0ea_ a.4.10.1 (A:) N-terminal Zn binding domain of HIV integrase {Human immunodeficiency virus type 2 [TaxId: 11709]}
Probab=9.00 E-value=56 Score=21.72 Aligned_cols=24 Identities=17% Similarity=0.479 Sum_probs=17.3
Q ss_pred HHHHHcCCCCCCCCCCCCchhhhHHHhcchhhHHHH
Q 016910 243 QMRKRFNLPANNSCCGKPAIADFAQWLFCCWCSLAQ 278 (380)
Q Consensus 243 qmRkRYgIpGs~~ccg~~~~~DC~~~~cC~pCALcQ 278 (380)
.||.+||||-. ...+.+. .|.-||
T Consensus 21 ~L~~~F~lp~~-------vAr~IV~-----~C~~Cq 44 (46)
T d1e0ea_ 21 ELSHKFGIPNL-------VARQIVN-----SCAQCQ 44 (46)
T ss_dssp HHHHHTCCCHH-------HHHHHHH-----HCHHHH
T ss_pred HHHHHcCCCHH-------HHHHHHH-----HHHHhc
Confidence 68999999987 6666665 355555
No 5
>d1zbdb_ g.50.1.1 (B:) Effector domain of rabphilin-3a {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=7.47 E-value=67 Score=24.49 Aligned_cols=24 Identities=21% Similarity=0.219 Sum_probs=18.5
Q ss_pred hhhHHHHHHHhhhhccccCCeeccccc
Q 016910 272 CWCSLAQEVRTADYYDVVEGKLCMKQT 298 (380)
Q Consensus 272 ~pCALcQE~RElk~~~v~~~~~~~~~~ 298 (380)
+-|.+|+..|++.. ..|.||.+..
T Consensus 92 w~C~~C~k~re~~~---~sg~Wf~~~~ 115 (124)
T d1zbdb_ 92 WLCKICLEQREVWK---RSGAWFFKGF 115 (124)
T ss_dssp EEEHHHHHHHHHHH---HTSHHHHTSC
T ss_pred EECccCcchHHHHH---HccChhhcCC
Confidence 46889999999987 6688866543
No 6
>d3dtub2 f.17.2.1 (B:30-129) Bacterial aa3 type cytochrome c oxidase subunit II {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=7.02 E-value=3.8e+02 Score=19.08 Aligned_cols=56 Identities=20% Similarity=0.451 Sum_probs=40.1
Q ss_pred cchhhHHHHHHHHHHHHHHHHhhhcccCCCCCC--Cc-h-----------hhhhHHHHHhhhhHHhHhhh
Q 016910 39 WTHMMVVVVLLHVNCFAQYTLCGLNWGYKRSER--PA-I-----------GVGICLSVAVAAPAIAGVYS 94 (380)
Q Consensus 39 ~~hm~~Vv~llh~nc~~Qy~lcgl~wgy~r~~R--P~-~-----------~~~~~~~~~~~~~~~Ag~y~ 94 (380)
+.|..+.++..-+-.+-+|.+....|-|++++= |+ + .+=+.|.++++.|.+.-+|.
T Consensus 27 ~l~~~v~~i~~~I~~~V~~~l~~~~~~~r~~~~~~~~~~~~n~~LEiiWTviP~lILi~l~~pS~~~ly~ 96 (100)
T d3dtub2 27 WLDGFILVIIAAITIFVTLLILYAVWRFHEKRNKVPARFTHNSPLEIAWTIVPIVILVAIGAFSLPVLFN 96 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTTCCSCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467778888888888999999999999886542 22 1 12245667788888777764
No 7
>d1ffva2 d.15.4.2 (A:3-81) Carbone monoxide (CO) dehydrogenase iron-sulfur protein, N-domain {Hydrogenophaga pseudoflava [TaxId: 47421]}
Probab=6.97 E-value=95 Score=22.42 Aligned_cols=21 Identities=19% Similarity=0.379 Sum_probs=16.7
Q ss_pred HHHHHcCCCCCCCCCCCCchh
Q 016910 243 QMRKRFNLPANNSCCGKPAIA 263 (380)
Q Consensus 243 qmRkRYgIpGs~~ccg~~~~~ 263 (380)
-+|+++|+.|....|+...|+
T Consensus 26 ~LR~~~gl~gtK~GC~~G~CG 46 (79)
T d1ffva2 26 FLREELNLTGAHIGCETSHCG 46 (79)
T ss_dssp HHHHTSCCTTSCCCCSSSCSC
T ss_pred HHhhhcCCcccccCCcccccc
Confidence 468999999999888765533
No 8
>d1rm6c2 d.15.4.2 (C:1-81) 4-hydroxybenzoyl-CoA reductase gamma subunit HrcC, N-terminal domain {Thauera aromatica [TaxId: 59405]}
Probab=6.08 E-value=1.2e+02 Score=21.99 Aligned_cols=23 Identities=13% Similarity=0.271 Sum_probs=16.9
Q ss_pred HHHHHcCCCCCCCCCCCCchhhh
Q 016910 243 QMRKRFNLPANNSCCGKPAIADF 265 (380)
Q Consensus 243 qmRkRYgIpGs~~ccg~~~~~DC 265 (380)
-+|+++|+.|....|+...|+=|
T Consensus 27 ~LR~~lgltgtK~gC~~G~CGAC 49 (81)
T d1rm6c2 27 YLRETVGLTGTKQGCDGGECGAC 49 (81)
T ss_dssp HHHHTTCCTTSCCCSSSSSSCTT
T ss_pred HHHHhhCCcccccCCccccCCcc
Confidence 46899999999887765554433
No 9
>d3ehbb2 f.17.2.1 (B:1-107) Bacterial aa3 type cytochrome c oxidase subunit II {Paracoccus denitrificans [TaxId: 266]}
Probab=6.02 E-value=4.8e+02 Score=18.84 Aligned_cols=56 Identities=18% Similarity=0.200 Sum_probs=39.6
Q ss_pred chhhHHHHHHHHHHHHHHHHhhhcccCCCCCCCc-------------h-hhhhHHHHHhhhhHHhHhhhh
Q 016910 40 THMMVVVVLLHVNCFAQYTLCGLNWGYKRSERPA-------------I-GVGICLSVAVAAPAIAGVYSV 95 (380)
Q Consensus 40 ~hm~~Vv~llh~nc~~Qy~lcgl~wgy~r~~RP~-------------~-~~~~~~~~~~~~~~~Ag~y~~ 95 (380)
.|..+.++..-+-.+-++++...+|-|+++.=|. | .+=+.|.++++.|.+..+|..
T Consensus 34 lh~~v~~i~~~I~~~V~~~~~~~~~~~r~~~~~~~~~~~~n~~lEi~WTviP~lIL~~laipSl~~Ly~m 103 (107)
T d3ehbb2 34 LDHFVLYIITAVTIFVCLLLLICIVRFNRRANPVPARFTHNTPIEVIWTLVPVLILVAIGAFSLPILFRS 103 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSBTTTSSSCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5666666666777788999999999998664322 1 123566778888888888864
No 10
>d2axtj1 f.23.32.1 (J:7-40) Photosystem II reaction center protein J, PsbJ {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=5.99 E-value=2.1e+02 Score=17.79 Aligned_cols=28 Identities=25% Similarity=0.391 Sum_probs=17.0
Q ss_pred CchhhhhHHHHHhhhhHHhHh--hhhhccCCC
Q 016910 72 PAIGVGICLSVAVAAPAIAGV--YSVISPLGK 101 (380)
Q Consensus 72 P~~~~~~~~~~~~~~~~~Ag~--y~~~splg~ 101 (380)
|=|.+++.- |+++-.+-|+ |-.||-||.
T Consensus 3 PLWlv~tv~--G~~vi~~vG~FfYGsYsGlGS 32 (34)
T d2axtj1 3 PLWIVATVA--GMGVIVIVGLFFYGAYAGLGS 32 (34)
T ss_dssp CHHHHHHHH--HHHHHHHHHHHHHHTTTSTTS
T ss_pred cEEEeeehh--hhhhHhheeeeeeeeeccccc
Confidence 667888744 4444455565 556776664
Done!