BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016911
(380 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2QP9|X Chain X, Crystal Structure Of S.Cerevisiae Vps4
pdb|2QPA|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
pdb|2QPA|B Chain B, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
pdb|2QPA|C Chain C, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
Length = 355
Score = 220 bits (561), Expect = 9e-58, Method: Compositional matrix adjust.
Identities = 105/212 (49%), Positives = 147/212 (69%), Gaps = 2/212 (0%)
Query: 165 GVLANVINERLQKPLLPNFDSAETRALAESLCRDIIRGSPDVKWESIKGLENAKRLLKEA 224
G +N N+++ + + + + L +L I+ P+VKWE + GLE AK LKEA
Sbjct: 7 GSGSNGGNKKISQEEGEDNGGEDNKKLRGALSSAILSEKPNVKWEDVAGLEGAKEALKEA 66
Query: 225 VVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRG 284
V++P+K+P F G P GILL+GPPGTGK+ LAKAVATE +TFF++S+S +VSKW G
Sbjct: 67 VILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMG 126
Query: 285 DSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQS 344
+SEKL+K LF +AR + PS IF+D++DA+ RGE E EASRR+KTELL+QM+G+
Sbjct: 127 ESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEG--ESEASRRIKTELLVQMNGVGND 184
Query: 345 DELVFVLAATNLPWELDAAMLRRLEKRVSFSL 376
+ V VL ATN+PW+LD+A+ RR E+R+ L
Sbjct: 185 SQGVLVLGATNIPWQLDSAIRRRFERRIYIPL 216
>pdb|2ZAM|A Chain A, Crystal Structure Of Mouse Skd1VPS4B APO-Form
pdb|2ZAN|A Chain A, Crystal Structure Of Mouse Skd1VPS4B ATP-Form
pdb|2ZAO|A Chain A, Crystal Structure Of Mouse Skd1VPS4B ADP-Form
Length = 444
Score = 218 bits (555), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 107/194 (55%), Positives = 140/194 (72%), Gaps = 3/194 (1%)
Query: 184 DSAETRALAESLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWK 243
D E + L L I+ P+VKW + GLE AK LKEAV++PIK+P FTG +PW+
Sbjct: 109 DDPEKKKLQNQLQGAIVIERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWR 168
Query: 244 GILLFGPPGTGKTMLAKAVATEC-KTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAP 302
GILLFGPPGTGK+ LAKAVATE +TFF+IS+S +VSKW G+SEKL+K LF+LAR + P
Sbjct: 169 GILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKP 228
Query: 303 STIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDA 362
S IF+DEID++ R E +E EA+RR+KTE L+QM G+ ++ + VL ATN+PW LD+
Sbjct: 229 SIIFIDEIDSLCGSRSE--NESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDS 286
Query: 363 AMLRRLEKRVSFSL 376
A+ RR EKR+ L
Sbjct: 287 AIRRRFEKRIYIPL 300
>pdb|3EIH|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
pdb|3EIH|B Chain B, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
pdb|3EIH|C Chain C, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
Length = 340
Score = 218 bits (554), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 102/190 (53%), Positives = 138/190 (72%), Gaps = 2/190 (1%)
Query: 187 ETRALAESLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGIL 246
+ + L +L I+ P+VKWE + GLE AK LKEAV++P+K+P F G P GIL
Sbjct: 14 DNKKLRGALSSAILSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGIL 73
Query: 247 LFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIF 306
L+GPPGTGK+ LAKAVATE +TFF++S+S +VSKW G+SEKL+K LF +AR + PS IF
Sbjct: 74 LYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIF 133
Query: 307 LDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLR 366
+D++DA+ RGE E EASRR+KTELL+QM+G+ + V VL ATN+PW+LD+A+ R
Sbjct: 134 IDQVDALTGTRGEG--ESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRR 191
Query: 367 RLEKRVSFSL 376
R E+R+ L
Sbjct: 192 RFERRIYIPL 201
>pdb|2RKO|A Chain A, Crystal Structure Of The Vps4p-Dimer
Length = 331
Score = 216 bits (550), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 103/182 (56%), Positives = 135/182 (74%), Gaps = 6/182 (3%)
Query: 199 IIRGS----PDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTG 254
+ RGS P+VKWE + GLE AK LKEAV++P+K+P F G P GILL+GPPGTG
Sbjct: 13 VPRGSLSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTG 72
Query: 255 KTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAII 314
K+ LAKAVATE +TFF++S+S +VSKW G+SEKL+K LF +AR + PS IF+DE+DA+
Sbjct: 73 KSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDEVDALT 132
Query: 315 SQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRVSF 374
RGE E EASRR+KTELL+QM+G+ + V VL ATN+PW+LD+A+ RR E+R+
Sbjct: 133 GTRGEG--ESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRRRFERRIYI 190
Query: 375 SL 376
L
Sbjct: 191 PL 192
>pdb|3EIE|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The So4-Bound
State
Length = 322
Score = 215 bits (548), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 100/178 (56%), Positives = 133/178 (74%), Gaps = 2/178 (1%)
Query: 199 IIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTML 258
I+ P+VKWE + GLE AK LKEAV++P+K+P F G P GILL+GPPGTGK+ L
Sbjct: 8 ILSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYL 67
Query: 259 AKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRG 318
AKAVATE +TFF++S+S +VSKW G+SEKL+K LF +AR + PS IF+D++DA+ RG
Sbjct: 68 AKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRG 127
Query: 319 EARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRVSFSL 376
E E EASRR+KTELL+QM+G+ + V VL ATN+PW+LD+A+ RR E+R+ L
Sbjct: 128 EG--ESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRRRFERRIYIPL 183
>pdb|1XWI|A Chain A, Crystal Structure Of Vps4b
Length = 322
Score = 212 bits (540), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 103/179 (57%), Positives = 135/179 (75%), Gaps = 3/179 (1%)
Query: 199 IIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTML 258
I+ P+VKW + GLE AK LKEAV++PIK+P FTG +PW+GILLFGPPGTGK+ L
Sbjct: 2 IVIERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYL 61
Query: 259 AKAVATEC-KTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQR 317
AKAVATE +TFF+IS+S +VSKW G+SEKL+K LF+LAR + PS IF+DEID++ R
Sbjct: 62 AKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSR 121
Query: 318 GEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRVSFSL 376
E +E EA+RR+KTE L+QM G+ ++ + VL ATN+PW LD+A+ RR EKR+ L
Sbjct: 122 SE--NESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRRRFEKRIYIPL 178
>pdb|3D8B|A Chain A, Crystal Structure Of Human Fidgetin-Like Protein 1 In
Complex With Adp
pdb|3D8B|B Chain B, Crystal Structure Of Human Fidgetin-Like Protein 1 In
Complex With Adp
Length = 357
Score = 194 bits (494), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 104/210 (49%), Positives = 140/210 (66%), Gaps = 12/210 (5%)
Query: 168 ANVINERLQKPLLPNFDSAETRALAESLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVM 227
A+ ++ERL K L P + E + +I+ P V WE I G+E AK +KE VV
Sbjct: 52 AHPVDERL-KNLEPK--------MIELIMNEIMDHGPPVNWEDIAGVEFAKATIKEIVVW 102
Query: 228 PIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSE 287
P+ P FTGL P KGILLFGPPGTGKT++ K +A++ TFF+ISASS+ SKW G+ E
Sbjct: 103 PMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTSKWVGEGE 162
Query: 288 KLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDE- 346
K+++ LF +AR P+ IF+DEID+++SQRG+ EHE+SRR+KTE L+Q+DG T S E
Sbjct: 163 KMVRALFAVARCQQPAVIFIDEIDSLLSQRGDG--EHESSRRIKTEFLVQLDGATTSSED 220
Query: 347 LVFVLAATNLPWELDAAMLRRLEKRVSFSL 376
+ V+ ATN P E+D A RRL KR+ L
Sbjct: 221 RILVVGATNRPQEIDEAARRRLVKRLYIPL 250
>pdb|3VFD|A Chain A, Human Spastin Aaa Domain
Length = 389
Score = 193 bits (491), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 101/202 (50%), Positives = 140/202 (69%), Gaps = 4/202 (1%)
Query: 176 QKPLLPNFDSAETRALAESLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYF 235
+K L NF + ++ LA + +I+ VK++ I G + AK+ L+E V++P P+ F
Sbjct: 83 KKKDLKNFRNVDSN-LANLIMNEIVDNGTAVKFDDIAGQDLAKQALQEIVILPSLRPELF 141
Query: 236 TGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFE 295
TGL +P +G+LLFGPPG GKTMLAKAVA E TFFNISA+S+ SK+ G+ EKL++ LF
Sbjct: 142 TGLRAPARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTSKYVGEGEKLVRALFA 201
Query: 296 LARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGL-TQSDELVFVLAAT 354
+AR PS IF+D++D+++ +R E EH+ASRRLKTE LI+ DG+ + D+ V V+ AT
Sbjct: 202 VARELQPSIIFIDQVDSLLCERREG--EHDASRRLKTEFLIEFDGVQSAGDDRVLVMGAT 259
Query: 355 NLPWELDAAMLRRLEKRVSFSL 376
N P ELD A+LRR KRV SL
Sbjct: 260 NRPQELDEAVLRRFIKRVYVSL 281
>pdb|3B9P|A Chain A, Spastin
Length = 297
Score = 191 bits (486), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 101/188 (53%), Positives = 133/188 (70%), Gaps = 4/188 (2%)
Query: 191 LAESLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGP 250
L + + +I+ G V+W I G + AK+ L+E V++P P+ FTGL +P KG+LLFGP
Sbjct: 3 LVQLILDEIVEGGAKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGP 62
Query: 251 PGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEI 310
PG GKT+LA+AVATEC TF NISA+S+ SK+ GD EKL++ LF +ARH PS IF+DE+
Sbjct: 63 PGNGKTLLARAVATECSATFLNISAASLTSKYVGDGEKLVRALFAVARHMQPSIIFIDEV 122
Query: 311 DAIISQRGEARSEHEASRRLKTELLIQMDGL--TQSDELVFVLAATNLPWELDAAMLRRL 368
D+++S+ + SEHEASRRLKTE L++ DGL + + VLAATN P ELD A LRR
Sbjct: 123 DSLLSE--RSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAALRRF 180
Query: 369 EKRVSFSL 376
KRV SL
Sbjct: 181 TKRVYVSL 188
>pdb|3H4M|A Chain A, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
pdb|3H4M|B Chain B, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
pdb|3H4M|C Chain C, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
Length = 285
Score = 142 bits (359), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 77/166 (46%), Positives = 111/166 (66%), Gaps = 5/166 (3%)
Query: 204 PDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAV 262
P+V++E I GLE + ++E V +P+K+P+ F + + P KGILL+GPPGTGKT+LAKAV
Sbjct: 12 PNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAV 71
Query: 263 ATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARS 322
ATE TF + S +V K+ G+ L+K +F+LA+ APS IF+DEIDAI ++R +A +
Sbjct: 72 ATETNATFIRVVGSELVKKFIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALT 131
Query: 323 --EHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLR 366
+ E R L +LL +MDG + V ++ ATN P LD A+LR
Sbjct: 132 GGDREVQRTL-MQLLAEMDGFDARGD-VKIIGATNRPDILDPAILR 175
>pdb|4B4T|K Chain K, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 428
Score = 139 bits (350), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 75/176 (42%), Positives = 113/176 (64%), Gaps = 7/176 (3%)
Query: 204 PDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAV 262
PDV + + GL+ K+ ++EAV +P+ + + + P +G+LL+GPPGTGKTML KAV
Sbjct: 167 PDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAV 226
Query: 263 ATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEAR- 321
A K F ++ S V K+ G+ ++++ +F LAR +APS IF+DE+D+I ++R +A+
Sbjct: 227 ANSTKAAFIRVNGSEFVHKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQT 286
Query: 322 -SEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLR--RLEKRVSF 374
S+ E R L ELL QMDG QS V V+ ATN LD A+LR RL++++ F
Sbjct: 287 GSDREVQRIL-IELLTQMDGFDQSTN-VKVIMATNRADTLDPALLRPGRLDRKIEF 340
>pdb|1R7R|A Chain A, The Crystal Structure Of Murine P97VCP AT 3.6A
Length = 816
Score = 139 bits (349), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 73/187 (39%), Positives = 115/187 (61%), Gaps = 5/187 (2%)
Query: 194 SLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPG 252
S R+ + P V WE I GLE+ KR L+E V P+++P F ++P KG+L +GPPG
Sbjct: 462 SALRETVVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPG 521
Query: 253 TGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDA 312
GKT+LAKA+A EC+ F +I +++ W G+SE ++ +F+ AR AP +F DE+D+
Sbjct: 522 CGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDS 581
Query: 313 IISQR-GEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLR--RLE 369
I R G A+ R+ ++L +MDG++ + + VF++ ATN P +D A+LR RL+
Sbjct: 582 IAKARGGNIGDGGGAADRVINQILTEMDGMS-TKKNVFIIGATNRPDIIDPAILRPGRLD 640
Query: 370 KRVSFSL 376
+ + L
Sbjct: 641 QLIYIPL 647
Score = 127 bits (318), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 69/175 (39%), Positives = 107/175 (61%), Gaps = 6/175 (3%)
Query: 205 DVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVA 263
+V ++ + G +KE V +P+++P F + + P +GILL+GPPGTGKT++A+AVA
Sbjct: 200 EVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVA 259
Query: 264 TECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSE 323
E FF I+ ++SK G+SE ++ FE A +AP+ IF+DE+DAI +R ++
Sbjct: 260 NETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKR--EKTH 317
Query: 324 HEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLR--RLEKRVSFSL 376
E RR+ ++LL MDGL Q V V+AATN P +D A+ R R ++ V +
Sbjct: 318 GEVERRIVSQLLTLMDGLKQRAH-VIVMAATNRPNSIDPALRRFGRFDREVDIGI 371
>pdb|3CF1|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF2|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|D Chain D, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF3|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADP
Length = 806
Score = 139 bits (349), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 73/187 (39%), Positives = 115/187 (61%), Gaps = 5/187 (2%)
Query: 194 SLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPG 252
S R+ + P V WE I GLE+ KR L+E V P+++P F ++P KG+L +GPPG
Sbjct: 462 SALRETVVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPG 521
Query: 253 TGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDA 312
GKT+LAKA+A EC+ F +I +++ W G+SE ++ +F+ AR AP +F DE+D+
Sbjct: 522 CGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDS 581
Query: 313 IISQR-GEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLR--RLE 369
I R G A+ R+ ++L +MDG++ + + VF++ ATN P +D A+LR RL+
Sbjct: 582 IAKARGGNIGDGGGAADRVINQILTEMDGMS-TKKNVFIIGATNRPDIIDPAILRPGRLD 640
Query: 370 KRVSFSL 376
+ + L
Sbjct: 641 QLIYIPL 647
Score = 127 bits (319), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 70/175 (40%), Positives = 107/175 (61%), Gaps = 6/175 (3%)
Query: 205 DVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVA 263
+V ++ I G +KE V +P+++P F + + P +GILL+GPPGTGKT++A+AVA
Sbjct: 200 EVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVA 259
Query: 264 TECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSE 323
E FF I+ ++SK G+SE ++ FE A +AP+ IF+DE+DAI +R ++
Sbjct: 260 NETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKR--EKTH 317
Query: 324 HEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLR--RLEKRVSFSL 376
E RR+ ++LL MDGL Q V V+AATN P +D A+ R R ++ V +
Sbjct: 318 GEVERRIVSQLLTLMDGLKQRAH-VIVMAATNRPNSIDPALRRFGRFDREVDIGI 371
>pdb|3CF0|A Chain A, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|B Chain B, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|C Chain C, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|D Chain D, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|E Chain E, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|F Chain F, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|G Chain G, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|H Chain H, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|I Chain I, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|J Chain J, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|K Chain K, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|L Chain L, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|M Chain M, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|N Chain N, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
Length = 301
Score = 138 bits (348), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 72/184 (39%), Positives = 114/184 (61%), Gaps = 5/184 (2%)
Query: 197 RDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGK 255
R+ + P V WE I GLE+ KR L+E V P+++P F ++P KG+L +GPPG GK
Sbjct: 3 RETVVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGK 62
Query: 256 TMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIIS 315
T+LAKA+A EC+ F +I +++ W G+SE ++ +F+ AR AP +F DE+D+I
Sbjct: 63 TLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAK 122
Query: 316 QR-GEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLR--RLEKRV 372
R G A+ R+ ++L +MDG++ + + VF++ ATN P +D A+LR RL++ +
Sbjct: 123 ARGGNIGDGGGAADRVINQILTEMDGMS-TKKNVFIIGATNRPDIIDPAILRPGRLDQLI 181
Query: 373 SFSL 376
L
Sbjct: 182 YIPL 185
>pdb|4B4T|J Chain J, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 405
Score = 130 bits (328), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 68/181 (37%), Positives = 111/181 (61%), Gaps = 7/181 (3%)
Query: 199 IIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTM 257
++ PD ++ + GL + +KE + +P+K+P+ F L ++ KG++L+GPPGTGKT+
Sbjct: 138 MVEKVPDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTL 197
Query: 258 LAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQR 317
LA+AVA F +S + +V K+ G+ ++++ LF +AR HAPS IF+DEID+I S R
Sbjct: 198 LARAVAHHTDCKFIRVSGAELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTR 257
Query: 318 --GEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLR--RLEKRVS 373
G + E R + ELL Q+DG S + ++A L LD A+LR R+++++
Sbjct: 258 VEGSGGGDSEVQRTM-LELLNQLDGFETSKNIKIIMATNRLDI-LDPALLRPGRIDRKIE 315
Query: 374 F 374
F
Sbjct: 316 F 316
>pdb|2X8A|A Chain A, Human Nuclear Valosin Containing Protein Like (Nvl), C-
Terminal Aaa-Atpase Domain
Length = 274
Score = 129 bits (323), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 71/177 (40%), Positives = 112/177 (63%), Gaps = 8/177 (4%)
Query: 204 PDVKWESIKGLENAKRLLKEAVVMPIKYPKYFT--GLLSPWKGILLFGPPGTGKTMLAKA 261
P+V W I LE+ + L A++ P++ P F GL++P G+LL GPPG GKT+LAKA
Sbjct: 5 PNVTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPA-GVLLAGPPGCGKTLLAKA 63
Query: 262 VATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEAR 321
VA E F ++ +++ + G+SE+ ++ +F+ A++ AP IF DE+DA+ +R +
Sbjct: 64 VANESGLNFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSD-- 121
Query: 322 SEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLR--RLEKRVSFSL 376
E AS R+ +LL +MDGL ++ + VF++AATN P +D A+LR RL+K + L
Sbjct: 122 RETGASVRVVNQLLTEMDGL-EARQQVFIMAATNRPDIIDPAILRPGRLDKTLFVGL 177
>pdb|4B4T|L Chain L, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 437
Score = 128 bits (322), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 72/176 (40%), Positives = 105/176 (59%), Gaps = 5/176 (2%)
Query: 205 DVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVA 263
++ ++ I GL R L+E + +P+K P+ F + + P KG+LL+GPPGTGKT+LAKAVA
Sbjct: 177 EITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVA 236
Query: 264 TECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQR-GEARS 322
F AS +V K+ G+S ++I+ +F A+ H P IF+DE+DAI +R E S
Sbjct: 237 ATIGANFIFSPASGIVDKYIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTS 296
Query: 323 EHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLR--RLEKRVSFSL 376
+R ELL QMDG + ++ ATN P LD A+LR RL+++V L
Sbjct: 297 ADREIQRTLMELLTQMDGFDNLGQTKIIM-ATNRPDTLDPALLRPGRLDRKVEIPL 351
>pdb|3HU3|A Chain A, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs
pdb|3HU3|B Chain B, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs
Length = 489
Score = 127 bits (319), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 70/175 (40%), Positives = 107/175 (61%), Gaps = 6/175 (3%)
Query: 205 DVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVA 263
+V ++ I G +KE V +P+++P F + + P +GILL+GPPGTGKT++A+AVA
Sbjct: 200 EVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVA 259
Query: 264 TECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSE 323
E FF I+ ++SK G+SE ++ FE A +AP+ IF+DE+DAI +R ++
Sbjct: 260 NETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKR--EKTH 317
Query: 324 HEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLR--RLEKRVSFSL 376
E RR+ ++LL MDGL Q V V+AATN P +D A+ R R ++ V +
Sbjct: 318 GEVERRIVSQLLTLMDGLKQRAH-VIVMAATNRPNSIDPALRRFGRFDREVDIGI 371
>pdb|3HU2|A Chain A, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|B Chain B, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|C Chain C, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|D Chain D, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|E Chain E, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|F Chain F, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
Length = 489
Score = 127 bits (319), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 70/175 (40%), Positives = 107/175 (61%), Gaps = 6/175 (3%)
Query: 205 DVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVA 263
+V ++ I G +KE V +P+++P F + + P +GILL+GPPGTGKT++A+AVA
Sbjct: 200 EVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVA 259
Query: 264 TECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSE 323
E FF I+ ++SK G+SE ++ FE A +AP+ IF+DE+DAI +R ++
Sbjct: 260 NETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKR--EKTH 317
Query: 324 HEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLR--RLEKRVSFSL 376
E RR+ ++LL MDGL Q V V+AATN P +D A+ R R ++ V +
Sbjct: 318 GEVERRIVSQLLTLMDGLKQRAH-VIVMAATNRPNSIDPALRRFGRFDREVDIGI 371
>pdb|3HU1|A Chain A, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|B Chain B, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|C Chain C, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|D Chain D, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|E Chain E, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|F Chain F, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
Length = 489
Score = 127 bits (319), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 70/175 (40%), Positives = 107/175 (61%), Gaps = 6/175 (3%)
Query: 205 DVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVA 263
+V ++ I G +KE V +P+++P F + + P +GILL+GPPGTGKT++A+AVA
Sbjct: 200 EVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVA 259
Query: 264 TECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSE 323
E FF I+ ++SK G+SE ++ FE A +AP+ IF+DE+DAI +R ++
Sbjct: 260 NETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKR--EKTH 317
Query: 324 HEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLR--RLEKRVSFSL 376
E RR+ ++LL MDGL Q V V+AATN P +D A+ R R ++ V +
Sbjct: 318 GEVERRIVSQLLTLMDGLKQRAH-VIVMAATNRPNSIDPALRRFGRFDREVDIGI 371
>pdb|1E32|A Chain A, Structure Of The N-Terminal Domain And The D1 Aaa Domain
Of Membrane Fusion Atpase P97
pdb|1S3S|A Chain A, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|B Chain B, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|C Chain C, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|D Chain D, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|E Chain E, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|F Chain F, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
Length = 458
Score = 127 bits (318), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 69/175 (39%), Positives = 107/175 (61%), Gaps = 6/175 (3%)
Query: 205 DVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVA 263
+V ++ + G +KE V +P+++P F + + P +GILL+GPPGTGKT++A+AVA
Sbjct: 200 EVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVA 259
Query: 264 TECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSE 323
E FF I+ ++SK G+SE ++ FE A +AP+ IF+DE+DAI +R ++
Sbjct: 260 NETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKR--EKTH 317
Query: 324 HEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLR--RLEKRVSFSL 376
E RR+ ++LL MDGL Q V V+AATN P +D A+ R R ++ V +
Sbjct: 318 GEVERRIVSQLLTLMDGLKQRAH-VIVMAATNRPNSIDPALRRFGRFDREVDIGI 371
>pdb|4B4T|H Chain H, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 467
Score = 126 bits (316), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 77/207 (37%), Positives = 115/207 (55%), Gaps = 15/207 (7%)
Query: 175 LQKPLLPNFDSAETRALAESLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKY 234
++ PL P D + T E PDV + + G ++ L+E V +P+ P+
Sbjct: 183 IELPLPPRIDPSVTMMTVEE--------KPDVTYSDVGGCKDQIEKLREVVELPLLSPER 234
Query: 235 FTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVL 293
F L + P KGILL+GPPGTGKT+ A+AVA TF + S +V K+ G+ ++++ L
Sbjct: 235 FATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQKYVGEGARMVREL 294
Query: 294 FELARHHAPSTIFLDEIDAIISQRGE--ARSEHEASRRLKTELLIQMDGLTQSDELVFVL 351
FE+AR IF DEIDA+ R + A ++E R + EL+ Q+DG + V+
Sbjct: 295 FEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTM-LELITQLDGFDPRGN-IKVM 352
Query: 352 AATNLPWELDAAMLR--RLEKRVSFSL 376
ATN P LD A+LR R++++V FSL
Sbjct: 353 FATNRPNTLDPALLRPGRIDRKVEFSL 379
>pdb|4B4T|I Chain I, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 437
Score = 126 bits (316), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 69/176 (39%), Positives = 112/176 (63%), Gaps = 5/176 (2%)
Query: 203 SPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKA 261
SP + I GLE+ + +KE+V +P+ +P+ + + + P KG++L+G PGTGKT+LAKA
Sbjct: 176 SPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKA 235
Query: 262 VATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEAR 321
VA + TF I S ++ K+ GD +L + +F++A +APS +F+DEIDAI ++R ++
Sbjct: 236 VANQTSATFLRIVGSELIQKYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSN 295
Query: 322 SEHEAS-RRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLR--RLEKRVSF 374
S E +R ELL Q+DG + V V+ ATN LD A++R R+++++ F
Sbjct: 296 SGGEREIQRTMLELLNQLDGFDDRGD-VKVIMATNKIETLDPALIRPGRIDRKILF 350
>pdb|4B4T|M Chain M, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 434
Score = 124 bits (311), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 74/179 (41%), Positives = 110/179 (61%), Gaps = 9/179 (5%)
Query: 204 PDVKWESIKGLENAKRLLKEAVVMPIKYPKYFT--GLLSPWKGILLFGPPGTGKTMLAKA 261
P + + GL+ L EA+V+P+K F G+ +P KG L++GPPGTGKT+LA+A
Sbjct: 176 PTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAP-KGALMYGPPGTGKTLLARA 234
Query: 262 VATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQR--GE 319
A + TF ++A +V + G+ KL++ F LA+ AP+ IF+DE+DAI ++R E
Sbjct: 235 CAAQTNATFLKLAAPQLVQMYIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSE 294
Query: 320 ARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLR--RLEKRVSFSL 376
+ E R + ELL Q+DG + SD+ V VLAATN LD A+LR RL++++ F L
Sbjct: 295 KSGDREVQRTM-LELLNQLDGFS-SDDRVKVLAATNRVDVLDPALLRSGRLDRKIEFPL 351
>pdb|2R62|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh
pdb|2R62|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh
pdb|2R65|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|C Chain C, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|D Chain D, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|E Chain E, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
Length = 268
Score = 122 bits (307), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 73/174 (41%), Positives = 105/174 (60%), Gaps = 6/174 (3%)
Query: 204 PDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPW-KGILLFGPPGTGKTMLAKAV 262
P+V+++ + G E AK + E +V +KYP+ + L + KG+LL GPPGTGKT+LAKAV
Sbjct: 6 PNVRFKDMAGNEEAKEEVVE-IVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAV 64
Query: 263 ATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQR--GEA 320
A E FF++ SS + + G ++ LFE A+ APS IF+DEIDAI R G
Sbjct: 65 AGEAHVPFFSMGGSSFIEMFVGLGASRVRDLFETAKKQAPSIIFIDEIDAIGKSRAAGGV 124
Query: 321 RSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLR--RLEKRV 372
S ++ + +LL +MDG + V VLAATN P LD A++R R +++V
Sbjct: 125 VSGNDEREQTLNQLLAEMDGFGSENAPVIVLAATNRPEILDPALMRPGRFDRQV 178
>pdb|2CE7|A Chain A, Edta Treated
pdb|2CE7|B Chain B, Edta Treated
pdb|2CE7|C Chain C, Edta Treated
pdb|2CE7|D Chain D, Edta Treated
pdb|2CE7|E Chain E, Edta Treated
pdb|2CE7|F Chain F, Edta Treated
pdb|2CEA|A Chain A, Cell Division Protein Ftsh
pdb|2CEA|B Chain B, Cell Division Protein Ftsh
pdb|2CEA|C Chain C, Cell Division Protein Ftsh
pdb|2CEA|D Chain D, Cell Division Protein Ftsh
pdb|2CEA|E Chain E, Cell Division Protein Ftsh
pdb|2CEA|F Chain F, Cell Division Protein Ftsh
Length = 476
Score = 117 bits (293), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 76/176 (43%), Positives = 102/176 (57%), Gaps = 8/176 (4%)
Query: 202 GSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFT--GLLSPWKGILLFGPPGTGKTMLA 259
G+ V ++ + G E A LKE VV +K P F G P KGILL GPPGTGKT+LA
Sbjct: 9 GNKRVTFKDVGGAEEAIEELKE-VVEFLKDPSKFNRIGARMP-KGILLVGPPGTGKTLLA 66
Query: 260 KAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGE 319
+AVA E FF+IS S V + G ++ LF A+ HAP +F+DEIDA+ RG
Sbjct: 67 RAVAGEANVPFFHISGSDFVELFVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGA 126
Query: 320 A-RSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLR--RLEKRV 372
H+ + +LL++MDG S E + V+AATN P LD A+LR R +K++
Sbjct: 127 GLGGGHDEREQTLNQLLVEMDGF-DSKEGIIVMAATNRPDILDPALLRPGRFDKKI 181
>pdb|3KDS|E Chain E, Apo-ftsh Crystal Structure
pdb|3KDS|F Chain F, Apo-ftsh Crystal Structure
pdb|3KDS|G Chain G, Apo-ftsh Crystal Structure
Length = 465
Score = 115 bits (287), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 75/176 (42%), Positives = 101/176 (57%), Gaps = 8/176 (4%)
Query: 202 GSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFT--GLLSPWKGILLFGPPGTGKTMLA 259
G+ V ++ + G E A LKE VV +K P F G P KGILL GPPGTG T+LA
Sbjct: 9 GNKRVTFKDVGGAEEAIEELKE-VVEFLKDPSKFNRIGARMP-KGILLVGPPGTGATLLA 66
Query: 260 KAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGE 319
+AVA E FF+IS S V + G ++ LF A+ HAP +F+DEIDA+ RG
Sbjct: 67 RAVAGEANVPFFHISGSDFVELFVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGA 126
Query: 320 A-RSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLR--RLEKRV 372
H+ + +LL++MDG S E + V+AATN P LD A+LR R +K++
Sbjct: 127 GLGGGHDEREQTLNQLLVEMDGF-DSKEGIIVMAATNRPDILDPALLRPGRFDKKI 181
>pdb|1LV7|A Chain A, Crystal Structure Of The Aaa Domain Of Ftsh
Length = 257
Score = 114 bits (286), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 68/173 (39%), Positives = 100/173 (57%), Gaps = 6/173 (3%)
Query: 208 WESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPW-KGILLFGPPGTGKTMLAKAVATEC 266
+ + G + AK + E +V ++ P F L KG+L+ GPPGTGKT+LAKA+A E
Sbjct: 11 FADVAGCDEAKEEVAE-LVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEA 69
Query: 267 KTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEA-RSEHE 325
K FF IS S V + G ++ +FE A+ AP IF+DEIDA+ QRG H+
Sbjct: 70 KVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHD 129
Query: 326 ASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLR--RLEKRVSFSL 376
+ ++L++MDG + +E + V+AATN P LD A+LR R +++V L
Sbjct: 130 EREQTLNQMLVEMDGF-EGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGL 181
>pdb|1IY2|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
Thermophilus
Length = 278
Score = 103 bits (258), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 68/178 (38%), Positives = 99/178 (55%), Gaps = 8/178 (4%)
Query: 203 SPDVKWESIKGLENAKRLLKEAVVMPIKYPKYF--TGLLSPWKGILLFGPPGTGKTMLAK 260
+P V ++ + G E AK + +V +K P F G P KG+LL GPPG GKT LA+
Sbjct: 34 APKVTFKDVAGAEEAK-EELKEIVEFLKNPSRFHEMGARIP-KGVLLVGPPGVGKTHLAR 91
Query: 261 AVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEA 320
AVA E + F S S V + G ++ LFE A+ HAP +F+DEIDA+ +RG
Sbjct: 92 AVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSG 151
Query: 321 RSEHEASR-RLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLR--RLEKRVSFS 375
R + +LL++MDG + D + V+AATN P LD A+LR R +++++
Sbjct: 152 VGGGNDEREQTLNQLLVEMDGF-EKDTAIVVMAATNRPDILDPALLRPGRFDRQIAID 208
>pdb|1IXZ|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
Thermophilus
pdb|1IY0|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Amp-Pnp
From Thermus Thermophilus
pdb|1IY1|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Adp From
Thermus Thermophilus
Length = 254
Score = 103 bits (257), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 56/136 (41%), Positives = 80/136 (58%), Gaps = 4/136 (2%)
Query: 243 KGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAP 302
KG+LL GPPG GKT LA+AVA E + F S S V + G ++ LFE A+ HAP
Sbjct: 50 KGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAP 109
Query: 303 STIFLDEIDAIISQRGEARSEHEASR-RLKTELLIQMDGLTQSDELVFVLAATNLPWELD 361
+F+DEIDA+ +RG R + +LL++MDG + D + V+AATN P LD
Sbjct: 110 CIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGF-EKDTAIVVMAATNRPDILD 168
Query: 362 AAMLR--RLEKRVSFS 375
A+LR R +++++
Sbjct: 169 PALLRPGRFDRQIAID 184
>pdb|4EIW|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|B Chain B, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|C Chain C, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|D Chain D, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|E Chain E, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|F Chain F, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
Length = 508
Score = 102 bits (253), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 56/136 (41%), Positives = 80/136 (58%), Gaps = 4/136 (2%)
Query: 243 KGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAP 302
KG+LL GPPG GKT LA+AVA E + F S S V + G ++ LFE A+ HAP
Sbjct: 74 KGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAP 133
Query: 303 STIFLDEIDAIISQRGEARSEHEASR-RLKTELLIQMDGLTQSDELVFVLAATNLPWELD 361
+F+DEIDA+ +RG R + +LL++MDG + D + V+AATN P LD
Sbjct: 134 CIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGF-EKDTAIVVMAATNRPDILD 192
Query: 362 AAMLR--RLEKRVSFS 375
A+LR R +++++
Sbjct: 193 PALLRPGRFDRQIAID 208
>pdb|2DHR|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|B Chain B, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|C Chain C, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|D Chain D, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|E Chain E, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|F Chain F, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
Length = 499
Score = 102 bits (253), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 68/178 (38%), Positives = 99/178 (55%), Gaps = 8/178 (4%)
Query: 203 SPDVKWESIKGLENAKRLLKEAVVMPIKYPKYF--TGLLSPWKGILLFGPPGTGKTMLAK 260
+P V ++ + G E AK + +V +K P F G P KG+LL GPPG GKT LA+
Sbjct: 25 APKVTFKDVAGAEEAK-EELKEIVEFLKNPSRFHEMGARIP-KGVLLVGPPGVGKTHLAR 82
Query: 261 AVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEA 320
AVA E + F S S V + G ++ LFE A+ HAP +F+DEIDA+ +RG
Sbjct: 83 AVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSG 142
Query: 321 RSEHEASR-RLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLR--RLEKRVSFS 375
R + +LL++MDG + D + V+AATN P LD A+LR R +++++
Sbjct: 143 VGGGNDEREQTLNQLLVEMDGF-EKDTAIVVMAATNRPDILDPALLRPGRFDRQIAID 199
>pdb|2QZ4|A Chain A, Human Paraplegin, Aaa Domain In Complex With Adp
Length = 262
Score = 101 bits (251), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 66/176 (37%), Positives = 100/176 (56%), Gaps = 7/176 (3%)
Query: 206 VKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPW-KGILLFGPPGTGKTMLAKAVAT 264
V ++ + G+ AK ++E V +K P+ F L + KG LL GPPG GKT+LAKAVAT
Sbjct: 3 VSFKDVAGMHEAKLEVRE-FVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVAT 61
Query: 265 ECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEH 324
E + F ++ + V G ++ LF+ AR AP +++DEIDA+ +R S
Sbjct: 62 EAQVPFLAMAGAEFVEVIGGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGF 121
Query: 325 EASRRLKT--ELLIQMDGLTQSDELVFVLAATNLPWELDAAMLR--RLEKRVSFSL 376
+ +T +LL++MDG+ +D V VLA+TN LD A++R RL++ V L
Sbjct: 122 SNTEEEQTLNQLLVEMDGMGTTDH-VIVLASTNRADILDGALMRPGRLDRHVFIDL 176
>pdb|1KSF|X Chain X, Crystal Structure Of Clpa, An Hsp100 Chaperone And
Regulator Of Clpap Protease: Structural Basis Of
Differences In Function Of The Two Aaa+ Atpase Domains
pdb|1R6B|X Chain X, High Resolution Crystal Structure Of Clpa
Length = 758
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 63/140 (45%), Gaps = 22/140 (15%)
Query: 246 LLFGPPGTGKTMLAKAVA------------TECKTTFFNISASSVVSKWRGDSEKLIKVL 293
LL G G GKT +A+ +A +C +I + +K+RGD EK K L
Sbjct: 211 LLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFEKRFKAL 270
Query: 294 FELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTEL---LIQMDGLTQSDELVFV 350
+ S +F+DEI II + + +A+ +K L I++ G T E
Sbjct: 271 LKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGKIRVIGSTTYQEF--- 327
Query: 351 LAATNLPWELDAAMLRRLEK 370
+N+ +E D A+ RR +K
Sbjct: 328 ---SNI-FEKDRALARRFQK 343
>pdb|3QMZ|A Chain A, Crystal Structure Of The Cytoplasmic Dynein Heavy Chain
Motor Domain
pdb|3QMZ|B Chain B, Crystal Structure Of The Cytoplasmic Dynein Heavy Chain
Motor Domain
Length = 2486
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 31/46 (67%), Gaps = 4/46 (8%)
Query: 217 AKRLLKEAVVMP----IKYPKYFTGLLSPWKGILLFGPPGTGKTML 258
A +++ +V+P IK+ K F LL+ +GI+L GPPG+GKTM+
Sbjct: 1019 AHEVMRPDIVIPTIDTIKHEKIFYDLLNSKRGIILCGPPGSGKTMI 1064
>pdb|4AI6|A Chain A, Dynein Motor Domain - Adp Complex
pdb|4AI6|B Chain B, Dynein Motor Domain - Adp Complex
pdb|4AKG|A Chain A, Dynein Motor Domain - Atp Complex
pdb|4AKG|B Chain B, Dynein Motor Domain - Atp Complex
pdb|4AKH|A Chain A, Dynein Motor Domain - Amppnp Complex
pdb|4AKH|B Chain B, Dynein Motor Domain - Amppnp Complex
pdb|4AKI|A Chain A, Dynein Motor Domain - Luac Derivative
pdb|4AKI|B Chain B, Dynein Motor Domain - Luac Derivative
Length = 2695
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 31/46 (67%), Gaps = 4/46 (8%)
Query: 217 AKRLLKEAVVMP----IKYPKYFTGLLSPWKGILLFGPPGTGKTML 258
A +++ +V+P IK+ K F LL+ +GI+L GPPG+GKTM+
Sbjct: 1238 AHEVMRPDIVIPTIDTIKHEKIFYDLLNSKRGIILCGPPGSGKTMI 1283
>pdb|1JBK|A Chain A, Crystal Structure Of The First Nucelotide Binding Domain
Of Clpb
Length = 195
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 62/141 (43%), Gaps = 24/141 (17%)
Query: 246 LLFGPPGTGKTMLAKAVATEC------------KTTFFNISASSVVSKWRGD-SEKLIKV 292
+L G PG GKT + + +A + ++ A +K+RG+ E+L V
Sbjct: 47 VLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAKYRGEFEERLKGV 106
Query: 293 LFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELL---IQMDGLTQSDELVF 349
L +LA+ +F+DE+ ++ G+A +A LK L + G T DE
Sbjct: 107 LNDLAKQEGNVILFIDELHTMVGA-GKADGAMDAGNMLKPALARGELHCVGATTLDEYRQ 165
Query: 350 VLAATNLPWELDAAMLRRLEK 370
+ E DAA+ RR +K
Sbjct: 166 YI-------EKDAALERRFQK 179
>pdb|2P65|A Chain A, Crystal Structure Of The First Nucleotide Binding Domain
Of Chaperone Clpb1, Putative, (Pv089580) From Plasmodium
Vivax
Length = 187
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 44/99 (44%), Gaps = 13/99 (13%)
Query: 246 LLFGPPGTGKTMLAKAVATEC------------KTTFFNISASSVVSKWRGD-SEKLIKV 292
+L G PG GKT + + +A + K ++S+ +K+RGD E+L +
Sbjct: 47 ILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLVSLDLSSLIAGAKYRGDFEERLKSI 106
Query: 293 LFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLK 331
L E+ +F+DEI ++ A +A LK
Sbjct: 107 LKEVQDAEGQVVMFIDEIHTVVGAGAVAEGALDAGNILK 145
>pdb|3HWS|A Chain A, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|B Chain B, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|C Chain C, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|D Chain D, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|E Chain E, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|F Chain F, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
Length = 363
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 54/112 (48%), Gaps = 13/112 (11%)
Query: 213 GLENAKRLLKEAVVMPIKYPKYFTGLLSPW-----KGILLFGPPGTGKTMLAKAVATECK 267
G E AK++L AV + Y + G S ILL GP G+GKT+LA+ +A
Sbjct: 19 GQEQAKKVL--AVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLD 76
Query: 268 TTFFNISASSVV-SKWRG-DSEKLIKVLFELARHHAPST----IFLDEIDAI 313
F A+++ + + G D E +I+ L + + +++D+ID I
Sbjct: 77 VPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVYIDQIDKI 128
>pdb|3HTE|A Chain A, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|B Chain B, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|C Chain C, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|D Chain D, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|E Chain E, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|F Chain F, Crystal Structure Of Nucleotide-Free Hexameric Clpx
Length = 363
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 54/112 (48%), Gaps = 13/112 (11%)
Query: 213 GLENAKRLLKEAVVMPIKYPKYFTGLLSPW-----KGILLFGPPGTGKTMLAKAVATECK 267
G E AK++L AV + Y + G S ILL GP G+GKT+LA+ +A
Sbjct: 19 GQEQAKKVL--AVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLD 76
Query: 268 TTFFNISASSVV-SKWRG-DSEKLIKVLFELARHHAPST----IFLDEIDAI 313
F A+++ + + G D E +I+ L + + +++D+ID I
Sbjct: 77 VPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVYIDQIDKI 128
>pdb|1IN8|A Chain A, Thermotoga Maritima Ruvb T158v
Length = 334
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 39/66 (59%), Gaps = 8/66 (12%)
Query: 245 ILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPST 304
+LL GPPG GKT LA +A+E +T ++++ V+ K +GD + +L L R
Sbjct: 54 VLLAGPPGLGKTTLAHIIASELQTN-IHVTSGPVLVK-QGD---MAAILTSLERG---DV 105
Query: 305 IFLDEI 310
+F+DEI
Sbjct: 106 LFIDEI 111
>pdb|1J7K|A Chain A, Thermotoga Maritima Ruvb P216g Mutant
Length = 334
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 39/66 (59%), Gaps = 8/66 (12%)
Query: 245 ILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPST 304
+LL GPPG GKT LA +A+E +T ++++ V+ K +GD + +L L R
Sbjct: 54 VLLAGPPGLGKTTLAHIIASELQTN-IHVTSGPVLVK-QGD---MAAILTSLERG---DV 105
Query: 305 IFLDEI 310
+F+DEI
Sbjct: 106 LFIDEI 111
>pdb|1IN5|A Chain A, Thermogota Maritima Ruvb A156s Mutant
Length = 334
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 39/66 (59%), Gaps = 8/66 (12%)
Query: 245 ILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPST 304
+LL GPPG GKT LA +A+E +T ++++ V+ K +GD + +L L R
Sbjct: 54 VLLAGPPGLGKTTLAHIIASELQTN-IHVTSGPVLVK-QGD---MAAILTSLERG---DV 105
Query: 305 IFLDEI 310
+F+DEI
Sbjct: 106 LFIDEI 111
>pdb|1IN7|A Chain A, Thermotoga Maritima Ruvb R170a
Length = 334
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 39/66 (59%), Gaps = 8/66 (12%)
Query: 245 ILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPST 304
+LL GPPG GKT LA +A+E +T ++++ V+ K +GD + +L L R
Sbjct: 54 VLLAGPPGLGKTTLAHIIASELQTN-IHVTSGPVLVK-QGD---MAAILTSLERG---DV 105
Query: 305 IFLDEI 310
+F+DEI
Sbjct: 106 LFIDEI 111
>pdb|1IN4|A Chain A, Thermotoga Maritima Ruvb Holliday Junction Branch
Migration Motor
Length = 334
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 39/66 (59%), Gaps = 8/66 (12%)
Query: 245 ILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPST 304
+LL GPPG GKT LA +A+E +T ++++ V+ K +GD + +L L R
Sbjct: 54 VLLAGPPGLGKTTLAHIIASELQTN-IHVTSGPVLVK-QGD---MAAILTSLERG---DV 105
Query: 305 IFLDEI 310
+F+DEI
Sbjct: 106 LFIDEI 111
>pdb|1HQC|A Chain A, Structure Of Ruvb From Thermus Thermophilus Hb8
pdb|1HQC|B Chain B, Structure Of Ruvb From Thermus Thermophilus Hb8
Length = 324
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 36/77 (46%), Gaps = 7/77 (9%)
Query: 240 SPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARH 299
P + +LLFGPPG GKT LA +A E +++ + K GD ++ E
Sbjct: 36 EPLEHLLLFGPPGLGKTTLAHVIAHELGVN-LRVTSGPAIEKP-GDLAAILANSLEEG-- 91
Query: 300 HAPSTIFLDEIDAIISQ 316
+F+DEI + Q
Sbjct: 92 ---DILFIDEIHRLSRQ 105
>pdb|1IXS|B Chain B, Structure Of Ruvb Complexed With Ruva Domain Iii
Length = 318
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 36/77 (46%), Gaps = 7/77 (9%)
Query: 240 SPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARH 299
P + +LLFGPPG GKT LA +A E +++ + K GD ++ E
Sbjct: 36 EPLEHLLLFGPPGLGKTTLAHVIAHELGVN-LRVTSGPAIEKP-GDLAAILANSLEEG-- 91
Query: 300 HAPSTIFLDEIDAIISQ 316
+F+DEI + Q
Sbjct: 92 ---DILFIDEIHRLSRQ 105
>pdb|1IXR|C Chain C, Ruva-Ruvb Complex
Length = 312
Score = 37.7 bits (86), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 36/77 (46%), Gaps = 7/77 (9%)
Query: 240 SPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARH 299
P + +LLFGPPG GKT LA +A E +++ + K GD ++ E
Sbjct: 36 EPLEHLLLFGPPGLGKTTLAHVIAHELGVN-LRVTSGPAIEKP-GDLAAILANSLEEG-- 91
Query: 300 HAPSTIFLDEIDAIISQ 316
+F+DEI + Q
Sbjct: 92 ---DILFIDEIHRLSRQ 105
>pdb|3PVS|A Chain A, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|B Chain B, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|C Chain C, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|D Chain D, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
Length = 447
Score = 37.0 bits (84), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 58/128 (45%), Gaps = 29/128 (22%)
Query: 245 ILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAP-- 302
++L+GPPGTGKT LA+ +A ISA + K I+ E AR +
Sbjct: 53 MILWGPPGTGKTTLAEVIARYANADVERISAVT-------SGVKEIREAIERARQNRNAG 105
Query: 303 --STIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLP-WE 359
+ +F+DE+ H ++ + L ++ T + F+ A T P +E
Sbjct: 106 RRTILFVDEV-------------HRFNKSQQDAFLPHIEDGT----ITFIGATTENPSFE 148
Query: 360 LDAAMLRR 367
L++A+L R
Sbjct: 149 LNSALLSR 156
>pdb|1IN6|A Chain A, Thermotoga Maritima Ruvb K64r Mutant
Length = 334
Score = 37.0 bits (84), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 39/66 (59%), Gaps = 8/66 (12%)
Query: 245 ILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPST 304
+LL GPPG G+T LA +A+E +T ++++ V+ K +GD + +L L R
Sbjct: 54 VLLAGPPGLGRTTLAHIIASELQTN-IHVTSGPVLVK-QGD---MAAILTSLERG---DV 105
Query: 305 IFLDEI 310
+F+DEI
Sbjct: 106 LFIDEI 111
>pdb|3M6A|A Chain A, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|B Chain B, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|C Chain C, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|D Chain D, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|E Chain E, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|F Chain F, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
Length = 543
Score = 36.6 bits (83), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 56/123 (45%), Gaps = 15/123 (12%)
Query: 209 ESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKT 268
E GLE +KE ++ + K L P + L GPPG GKT LAK++A
Sbjct: 81 EEHHGLEK----VKERILEYLAVQKLTKSLKGPI--LCLAGPPGVGKTSLAKSIAKSLGR 134
Query: 269 TFFNISASSV--VSKWRGDSEKLI-----KVLFELARHHAPSTIF-LDEIDAIISQ-RGE 319
F IS V S+ RG + +++ + + + +F LDEID + S RG+
Sbjct: 135 KFVRISLGGVRDESEIRGHRRTYVGAMPGRIIQGMKKAGKLNPVFLLDEIDKMSSDFRGD 194
Query: 320 ARS 322
S
Sbjct: 195 PSS 197
>pdb|2C9O|A Chain A, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
pdb|2C9O|B Chain B, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
pdb|2C9O|C Chain C, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
Length = 456
Score = 36.6 bits (83), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 40/81 (49%), Gaps = 9/81 (11%)
Query: 213 GLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATE--CKTTF 270
G ENA+ V++ + K G + +LL GPPGTGKT LA A+A E K F
Sbjct: 41 GQENAREAC--GVIVELIKSKKMAG-----RAVLLAGPPGTGKTALALAIAQELGSKVPF 93
Query: 271 FNISASSVVSKWRGDSEKLIK 291
+ S V S +E L++
Sbjct: 94 CPMVGSEVYSTEIKKTEVLME 114
>pdb|1OFH|A Chain A, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFH|B Chain B, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFH|C Chain C, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFI|A Chain A, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
pdb|1OFI|B Chain B, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
pdb|1OFI|C Chain C, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
Length = 310
Score = 35.8 bits (81), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 36/154 (23%), Positives = 71/154 (46%), Gaps = 19/154 (12%)
Query: 243 KGILLFGPPGTGKTMLAKAVATECKTTFFNISAS--SVVSKWRGDSEKLIKVLFELARHH 300
K IL+ GP G GKT +A+ +A F + A+ + V + + +I+ L + A
Sbjct: 51 KNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAGGA 110
Query: 301 APST-----IFLDEIDAIISQRGEARSEHEASRRLKTELLIQMD--------GLTQSDEL 347
+ +F+DEID I ++GE + ++ +LL ++ G+ ++D +
Sbjct: 111 IDAVEQNGIVFIDEIDK-ICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHI 169
Query: 348 VFVLAA---TNLPWELDAAMLRRLEKRVSFSLIA 378
+F+ + P +L + RL RV + ++
Sbjct: 170 LFIASGAFQVARPSDLIPELQGRLPIRVELTALS 203
>pdb|1D2N|A Chain A, D2 Domain Of N-Ethylmaleimide-Sensitive Fusion Protein
Length = 272
Score = 35.8 bits (81), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 40/80 (50%), Gaps = 7/80 (8%)
Query: 240 SPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSE----KLIKVLFE 295
+P +LL GPP +GKT LA +A E F I + K G SE + +K +F+
Sbjct: 62 TPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSP---DKMIGFSETAKCQAMKKIFD 118
Query: 296 LARHHAPSTIFLDEIDAIIS 315
A S + +D+I+ ++
Sbjct: 119 DAYKSQLSCVVVDDIERLLD 138
>pdb|1NSF|A Chain A, D2 Hexamerization Domain Of N-Ethylmaleimide Sensitive
Factor (Nsf)
Length = 273
Score = 35.8 bits (81), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 40/80 (50%), Gaps = 7/80 (8%)
Query: 240 SPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSE----KLIKVLFE 295
+P +LL GPP +GKT LA +A E F I + K G SE + +K +F+
Sbjct: 61 TPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSP---DKMIGFSETAKCQAMKKIFD 117
Query: 296 LARHHAPSTIFLDEIDAIIS 315
A S + +D+I+ ++
Sbjct: 118 DAYKSQLSCVVVDDIERLLD 137
>pdb|1UM8|A Chain A, Crystal Structure Of Helicobacter Pylori Clpx
Length = 376
Score = 35.8 bits (81), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 7/85 (8%)
Query: 244 GILLFGPPGTGKTMLAKAVATECKTTFFNISASSVV-SKWRG-DSEKLIKVLFELA---- 297
ILL GP G+GKT++A+ +A A+S+ + + G D E ++ L + +
Sbjct: 74 NILLIGPTGSGKTLMAQTLAKHLDIPIAISDATSLTEAGYVGEDVENILTRLLQASDWNV 133
Query: 298 RHHAPSTIFLDEIDAIISQRGEARS 322
+ +F+DEID IS+ E RS
Sbjct: 134 QKAQKGIVFIDEIDK-ISRLSENRS 157
>pdb|2XSZ|A Chain A, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|B Chain B, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|C Chain C, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
Length = 367
Score = 35.0 bits (79), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 34/70 (48%), Gaps = 9/70 (12%)
Query: 213 GLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATE--CKTTF 270
G ENA+ V++ + K G + +LL GPPGTGKT LA A+A E K F
Sbjct: 55 GQENAREAC--GVIVELIKSKKXAG-----RAVLLAGPPGTGKTALALAIAQELGSKVPF 107
Query: 271 FNISASSVVS 280
S V S
Sbjct: 108 CPXVGSEVYS 117
>pdb|1SXJ|A Chain A, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 516
Score = 34.7 bits (78), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 22/40 (55%)
Query: 242 WKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSK 281
++ +L+GPPG GKT A VA E +AS V SK
Sbjct: 77 FRAAMLYGPPGIGKTTAAHLVAQELGYDILEQNASDVRSK 116
>pdb|1ZXJ|A Chain A, Crystal Structure Of The Hypthetical Mycoplasma Protein,
Mpn555
pdb|1ZXJ|B Chain B, Crystal Structure Of The Hypthetical Mycoplasma Protein,
Mpn555
pdb|1ZXJ|C Chain C, Crystal Structure Of The Hypthetical Mycoplasma Protein,
Mpn555
pdb|1ZXJ|D Chain D, Crystal Structure Of The Hypthetical Mycoplasma Protein,
Mpn555
Length = 218
Score = 34.7 bits (78), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 13/62 (20%)
Query: 182 NFDSAETRALAESLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSP 241
N D AE + + E L RD+I+G+ D ++I A++++K+A+V F L
Sbjct: 105 NIDEAELKNVMEGLKRDVIQGAEDNTVQAI-----AEKIIKKALV--------FNHLQKE 151
Query: 242 WK 243
WK
Sbjct: 152 WK 153
>pdb|1IQP|A Chain A, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|B Chain B, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|C Chain C, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|D Chain D, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|E Chain E, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|F Chain F, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
Length = 327
Score = 33.9 bits (76), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 39/90 (43%), Gaps = 23/90 (25%)
Query: 245 ILLFGPPGTGKTMLAKAVATEC-----KTTFFNISASSVVSKWRGDSEKLIKVLFELARH 299
+L GPPG GKT A A+A E + F ++AS E+ I V+ E +
Sbjct: 49 LLFAGPPGVGKTTAALALARELFGENWRHNFLELNAS---------DERGINVIREKVKE 99
Query: 300 HAPS---------TIFLDEIDAIISQRGEA 320
A + IFLDE DA+ +A
Sbjct: 100 FARTKPIGGASFKIIFLDEADALTQDAQQA 129
>pdb|1QVR|A Chain A, Crystal Structure Analysis Of Clpb
pdb|1QVR|B Chain B, Crystal Structure Analysis Of Clpb
pdb|1QVR|C Chain C, Crystal Structure Analysis Of Clpb
Length = 854
Score = 33.1 bits (74), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 52/117 (44%), Gaps = 17/117 (14%)
Query: 246 LLFGPPGTGKTMLAKAVATEC------------KTTFFNISASSVVSKWRGD-SEKLIKV 292
+L G PG GKT + + +A + + + +K+RG+ E+L V
Sbjct: 195 VLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLAGAKYRGEFEERLKAV 254
Query: 293 LFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELL---IQMDGLTQSDE 346
+ E+ + +F+DE+ ++ G+A +A LK L +++ G T DE
Sbjct: 255 IQEVVQSQGEVILFIDELHTVVGA-GKAEGAVDAGNMLKPALARGELRLIGATTLDE 310
>pdb|1SXJ|C Chain C, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 340
Score = 32.3 bits (72), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 38/80 (47%), Gaps = 13/80 (16%)
Query: 245 ILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPST 304
+L +GPPGTGKT A+A E + + S++V + ++ I V+ + A +
Sbjct: 49 LLFYGPPGTGKTSTIVALARE----IYGKNYSNMVLELNASDDRGIDVVRNQIKDFASTR 104
Query: 305 ---------IFLDEIDAIIS 315
I LDE DA+ +
Sbjct: 105 QIFSKGFKLIILDEADAMTN 124
>pdb|1DO2|A Chain A, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|B Chain B, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|C Chain C, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|D Chain D, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO0|A Chain A, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|B Chain B, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|C Chain C, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|D Chain D, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|E Chain E, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|F Chain F, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
Length = 442
Score = 32.0 bits (71), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 243 KGILLFGPPGTGKTMLAKAVATECKTTFFNISAS 276
K IL+ GP G GKT +A+ +A F + A+
Sbjct: 50 KNILMIGPTGVGKTEIARRLAKLANAPFIKVEAT 83
>pdb|1E94|E Chain E, Hslv-Hslu From E.Coli
pdb|1E94|F Chain F, Hslv-Hslu From E.Coli
pdb|1HT2|E Chain E, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT2|F Chain F, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT2|G Chain G, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT2|H Chain H, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT1|E Chain E, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HT1|F Chain F, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HT1|G Chain G, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HT1|I Chain I, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HQY|E Chain E, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HQY|F Chain F, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
Length = 449
Score = 32.0 bits (71), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 243 KGILLFGPPGTGKTMLAKAVATECKTTFFNISAS 276
K IL+ GP G GKT +A+ +A F + A+
Sbjct: 57 KNILMIGPTGVGKTEIARRLAKLANAPFIKVEAT 90
>pdb|1G4A|E Chain E, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4A|F Chain F, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|E Chain E, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|F Chain F, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|K Chain K, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|L Chain L, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1YYF|A Chain A, Correction Of X-Ray Intensities From An Hslv-Hslu Co-
Crystal Containing Lattice Translocation Defects
pdb|1YYF|B Chain B, Correction Of X-Ray Intensities From An Hslv-Hslu Co-
Crystal Containing Lattice Translocation Defects
Length = 443
Score = 32.0 bits (71), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 243 KGILLFGPPGTGKTMLAKAVATECKTTFFNISAS 276
K IL+ GP G GKT +A+ +A F + A+
Sbjct: 51 KNILMIGPTGVGKTEIARRLAKLANAPFIKVEAT 84
>pdb|4HSE|A Chain A, Crystal Structure Of Clpb Nbd1 In Complex With Guanidinium
Chloride And Adp
Length = 397
Score = 32.0 bits (71), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 52/117 (44%), Gaps = 17/117 (14%)
Query: 246 LLFGPPGTGKTMLAKAVATEC------------KTTFFNISASSVVSKWRGD-SEKLIKV 292
+L G PG GKT + + +A + + + +K+RG+ E+L V
Sbjct: 58 VLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLAGAKYRGEFEERLKAV 117
Query: 293 LFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELL---IQMDGLTQSDE 346
+ E+ + +F+DE+ ++ G+A +A LK L +++ G T DE
Sbjct: 118 IQEVVQSQGEVILFIDELHTVVGA-GKAEGAVDAGNMLKPALARGELRLIGATTLDE 173
>pdb|3UK6|A Chain A, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|B Chain B, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|C Chain C, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|D Chain D, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|E Chain E, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|F Chain F, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|G Chain G, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|H Chain H, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|I Chain I, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|J Chain J, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|K Chain K, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|L Chain L, Crystal Structure Of The Tip48 (Tip49b) Hexamer
Length = 368
Score = 32.0 bits (71), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 37/80 (46%), Gaps = 6/80 (7%)
Query: 243 KGILLFGPPGTGKTMLAKAVATEC--KTTFFNISASSVVSKWRGDSEKLIKVLFE----L 296
+ +L+ G PGTGKT +A +A T F I+ S + S +E L +
Sbjct: 71 RAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIFSLEMSKTEALTQAFRRSIGVR 130
Query: 297 ARHHAPSTIFLDEIDAIISQ 316
+ A T+ L EID I S+
Sbjct: 131 IKAGAVHTVSLHEIDVINSR 150
>pdb|1G3I|A Chain A, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|B Chain B, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|C Chain C, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|D Chain D, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|E Chain E, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|F Chain F, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|S Chain S, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|T Chain T, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|U Chain U, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|V Chain V, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|W Chain W, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|X Chain X, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G41|A Chain A, Crystal Structure Of Hslu Haemophilus Influenzae
pdb|1KYI|A Chain A, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|B Chain B, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|C Chain C, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|D Chain D, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|E Chain E, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|F Chain F, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|S Chain S, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|T Chain T, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|U Chain U, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|V Chain V, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|W Chain W, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|X Chain X, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
Length = 444
Score = 32.0 bits (71), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 243 KGILLFGPPGTGKTMLAKAVATECKTTFFNISAS 276
K IL+ GP G GKT +A+ +A F + A+
Sbjct: 51 KNILMIGPTGVGKTEIARRLAKLANAPFIKVEAT 84
>pdb|1RKB|A Chain A, The Structure Of Adrenal Gland Protein Ad-004
Length = 173
Score = 31.6 bits (70), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 244 GILLFGPPGTGKTMLAKAVATECKTTFFNIS 274
ILL G PG GKT L K +A++ + N+
Sbjct: 6 NILLTGTPGVGKTTLGKELASKSGLKYINVG 36
>pdb|3IIJ|A Chain A, The Structure Of Hcinap-Adp Complex At 1.76 Angstroms
Resolution.
pdb|3IIK|A Chain A, The Structure Of Hcinap-So4 Complex At 1.95 Angstroms
Resolution
pdb|3IIL|A Chain A, The Structure Of Hcinap-Mgadp-Pi Complex At 2.0 Angstroms
Resolution
pdb|3IIM|A Chain A, The Structure Of Hcinap-Dadp Complex At 2.0 Angstroms
Resolution
Length = 180
Score = 31.6 bits (70), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 5/47 (10%)
Query: 228 PIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNIS 274
P+ P++ +L P ILL G PG GKT L K +A++ + N+
Sbjct: 2 PLGSPEF---MLLP--NILLTGTPGVGKTTLGKELASKSGLKYINVG 43
>pdb|2CHQ|A Chain A, Replication Factor C Adpnp Complex
pdb|2CHQ|B Chain B, Replication Factor C Adpnp Complex
pdb|2CHQ|C Chain C, Replication Factor C Adpnp Complex
pdb|2CHV|A Chain A, Replication Factor C Adpnp Complex
pdb|2CHV|B Chain B, Replication Factor C Adpnp Complex
pdb|2CHV|C Chain C, Replication Factor C Adpnp Complex
pdb|2CHV|D Chain D, Replication Factor C Adpnp Complex
pdb|2CHV|E Chain E, Replication Factor C Adpnp Complex
pdb|2CHV|F Chain F, Replication Factor C Adpnp Complex
Length = 319
Score = 31.2 bits (69), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 40/85 (47%), Gaps = 23/85 (27%)
Query: 245 ILLFGPPGTGKTMLAKAVATEC-----KTTFFNISASSVVSKWRGDSEKLIKV----LFE 295
+L GPPGTGKT A A+A + + F ++AS E+ I V + E
Sbjct: 41 LLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNAS---------DERGIDVVRHKIKE 91
Query: 296 LARHH----AP-STIFLDEIDAIIS 315
AR AP IFLDE DA+ +
Sbjct: 92 FARTAPIGGAPFKIIFLDEADALTA 116
>pdb|1L8Q|A Chain A, Crystal Structure Of Dna Replication Initiation Factor
Length = 324
Score = 31.2 bits (69), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 21/41 (51%)
Query: 237 GLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASS 277
L S + I ++G GTGKT L +A E K + + SS
Sbjct: 32 NLGSLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSS 72
>pdb|3R8F|A Chain A, Protein-Dna Complex
pdb|3R8F|B Chain B, Protein-Dna Complex
pdb|3R8F|C Chain C, Protein-Dna Complex
pdb|3R8F|D Chain D, Protein-Dna Complex
Length = 324
Score = 31.2 bits (69), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 21/41 (51%)
Query: 237 GLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASS 277
L S + I ++G GTGKT L +A E K + + SS
Sbjct: 32 NLGSLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSS 72
>pdb|2HCB|A Chain A, Structure Of Amppcp-Bound Dnaa From Aquifex Aeolicus
pdb|2HCB|B Chain B, Structure Of Amppcp-Bound Dnaa From Aquifex Aeolicus
pdb|2HCB|C Chain C, Structure Of Amppcp-Bound Dnaa From Aquifex Aeolicus
pdb|2HCB|D Chain D, Structure Of Amppcp-Bound Dnaa From Aquifex Aeolicus
Length = 323
Score = 31.2 bits (69), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 21/41 (51%)
Query: 237 GLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASS 277
L S + I ++G GTGKT L +A E K + + SS
Sbjct: 31 NLGSLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSS 71
>pdb|3K1J|A Chain A, Crystal Structure Of Lon Protease From Thermococcus
Onnurineus Na1
pdb|3K1J|B Chain B, Crystal Structure Of Lon Protease From Thermococcus
Onnurineus Na1
Length = 604
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 12/19 (63%), Positives = 16/19 (84%)
Query: 245 ILLFGPPGTGKTMLAKAVA 263
+LL G PGTGK+ML +A+A
Sbjct: 63 VLLIGEPGTGKSMLGQAMA 81
>pdb|3PXG|A Chain A, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|B Chain B, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|C Chain C, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|D Chain D, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|E Chain E, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|F Chain F, Structure Of Meca121 And Clpc1-485 Complex
Length = 468
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 8/75 (10%)
Query: 246 LLFGPPGTGKTMLAKAVATECKTTFF-------NISASSVVSKWRGDSEKLIKVLFELAR 298
+L G PG GKT +A+ +A + + + +K+RG+ E +K + + R
Sbjct: 205 VLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMGTKYRGEFEDRLKKVMDEIR 264
Query: 299 HHAPSTIFLD-EIDA 312
+F+D IDA
Sbjct: 265 QAGNIILFIDAAIDA 279
>pdb|2CHG|A Chain A, Replication Factor C Domains 1 And 2
pdb|2CHG|B Chain B, Replication Factor C Domains 1 And 2
pdb|2CHG|C Chain C, Replication Factor C Domains 1 And 2
pdb|2CHG|D Chain D, Replication Factor C Domains 1 And 2
Length = 226
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 40/85 (47%), Gaps = 23/85 (27%)
Query: 245 ILLFGPPGTGKTMLAKAVATEC-----KTTFFNISASSVVSKWRGDSEKLIKV----LFE 295
+L GPPGTGKT A A+A + + F ++AS E+ I V + E
Sbjct: 41 LLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNAS---------DERGIDVVRHKIKE 91
Query: 296 LARHH----AP-STIFLDEIDAIIS 315
AR AP IFLDE DA+ +
Sbjct: 92 FARTAPIGGAPFKIIFLDEADALTA 116
>pdb|3PXI|A Chain A, Structure Of Meca108:clpc
pdb|3PXI|B Chain B, Structure Of Meca108:clpc
pdb|3PXI|C Chain C, Structure Of Meca108:clpc
Length = 758
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 8/75 (10%)
Query: 246 LLFGPPGTGKTMLAKAVATECKTTFF-------NISASSVVSKWRGDSEKLIKVLFELAR 298
+L G PG GKT +A+ +A + + + +K+RG+ E +K + + R
Sbjct: 205 VLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMGTKYRGEFEDRLKKVMDEIR 264
Query: 299 HHAPSTIFLD-EIDA 312
+F+D IDA
Sbjct: 265 QAGNIILFIDAAIDA 279
>pdb|1IM2|A Chain A, Hslu, Haemophilus Influenzae, Selenomethionine Variant
Length = 444
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 18/34 (52%)
Query: 243 KGILLFGPPGTGKTMLAKAVATECKTTFFNISAS 276
K IL GP G GKT +A+ +A F + A+
Sbjct: 51 KNILXIGPTGVGKTEIARRLAKLANAPFIKVEAT 84
>pdb|2XSZ|D Chain D, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|E Chain E, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|F Chain F, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
Length = 378
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 36/83 (43%), Gaps = 9/83 (10%)
Query: 243 KGILLFGPPGTGKTMLAKAVATEC--KTTFFNISASSVVSKWRGDSEKL-------IKVL 293
+ +L+ G PGTGKT +A A T F I+ S + S +E L I V
Sbjct: 86 RAVLIAGQPGTGKTAIAXGXAQALGPDTPFTAIAGSEIFSLEXSKTEALTQAFRRSIGVR 145
Query: 294 FELARHHAPSTIFLDEIDAIISQ 316
+ T+ L EID I S+
Sbjct: 146 IKEGPPGVVHTVSLHEIDVINSR 168
>pdb|1Y63|A Chain A, Initial Crystal Structural Analysis Of A Probable Kinase
From Leishmania Major Friedlin
Length = 184
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 16/22 (72%)
Query: 244 GILLFGPPGTGKTMLAKAVATE 265
IL+ G PGTGKT +A+ +A E
Sbjct: 12 NILITGTPGTGKTSMAEMIAAE 33
>pdb|4DK0|A Chain A, Crystal Structure Of Maca From Actinobacillus
Actinomycetemcomitans
Length = 369
Score = 28.9 bits (63), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 109 FGRKKIKEPEKGEITERPVSDGSSLNSN 136
G KI P G + PVS+G ++NSN
Sbjct: 152 LGYTKITSPIDGTVISTPVSEGQTVNSN 179
>pdb|4F4J|A Chain A, Conversion Of The Enzyme Guanylate Kinase Into A Mitotic
Spindle Orienting Protein By A Single Mutation That
Inhibits Gmp- Induced Closing
pdb|4F4J|B Chain B, Conversion Of The Enzyme Guanylate Kinase Into A Mitotic
Spindle Orienting Protein By A Single Mutation That
Inhibits Gmp- Induced Closing
Length = 202
Score = 28.5 bits (62), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Query: 234 YFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTF 270
YF G +S + I++ GP GTGK+ L K + E +F
Sbjct: 11 YFQGSMS--RPIVISGPSGTGKSTLLKKLFAEYPDSF 45
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,160,622
Number of Sequences: 62578
Number of extensions: 379683
Number of successful extensions: 1208
Number of sequences better than 100.0: 83
Number of HSP's better than 100.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 1065
Number of HSP's gapped (non-prelim): 90
length of query: 380
length of database: 14,973,337
effective HSP length: 101
effective length of query: 279
effective length of database: 8,652,959
effective search space: 2414175561
effective search space used: 2414175561
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)