Query 016911
Match_columns 380
No_of_seqs 354 out of 2273
Neff 6.6
Searched_HMMs 46136
Date Fri Mar 29 03:54:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016911.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016911hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0738 AAA+-type ATPase [Post 100.0 3.6E-38 7.9E-43 308.0 16.6 200 179-379 181-384 (491)
2 COG1222 RPT1 ATP-dependent 26S 100.0 1.4E-36 3E-41 295.1 16.4 179 200-379 142-324 (406)
3 KOG0739 AAA+-type ATPase [Post 100.0 4.2E-35 9E-40 278.7 15.9 184 194-379 118-301 (439)
4 KOG0730 AAA+-type ATPase [Post 100.0 1.5E-34 3.2E-39 298.0 14.0 184 193-379 418-604 (693)
5 KOG0736 Peroxisome assembly fa 100.0 3.9E-34 8.4E-39 297.7 16.0 178 202-379 665-845 (953)
6 KOG0733 Nuclear AAA ATPase (VC 100.0 5.9E-34 1.3E-38 290.5 15.2 188 189-379 491-681 (802)
7 COG1223 Predicted ATPase (AAA+ 100.0 4.2E-32 9.2E-37 254.2 12.7 227 142-380 47-287 (368)
8 KOG0733 Nuclear AAA ATPase (VC 100.0 1.9E-31 4.1E-36 272.3 15.7 173 204-379 185-363 (802)
9 KOG0734 AAA+-type ATPase conta 100.0 3.8E-31 8.2E-36 266.7 14.7 173 204-380 299-474 (752)
10 KOG0727 26S proteasome regulat 100.0 6.7E-30 1.5E-34 238.8 14.5 179 200-379 146-328 (408)
11 KOG0726 26S proteasome regulat 100.0 7.4E-29 1.6E-33 235.5 12.8 179 200-379 176-358 (440)
12 KOG0737 AAA+-type ATPase [Post 100.0 2.5E-28 5.3E-33 238.5 14.5 179 199-379 82-263 (386)
13 KOG0729 26S proteasome regulat 100.0 4.3E-28 9.3E-33 228.1 15.1 188 192-380 160-351 (435)
14 KOG0652 26S proteasome regulat 100.0 3.1E-28 6.7E-33 228.5 13.7 179 200-379 162-344 (424)
15 KOG0735 AAA+-type ATPase [Post 100.0 4.4E-28 9.6E-33 250.8 16.1 174 204-380 662-838 (952)
16 COG0464 SpoVK ATPases of the A 100.0 8.5E-28 1.8E-32 249.2 15.5 179 198-379 231-412 (494)
17 KOG0731 AAA+-type ATPase conta 100.0 6.5E-28 1.4E-32 255.0 14.8 175 203-379 305-484 (774)
18 KOG0728 26S proteasome regulat 100.0 9.7E-28 2.1E-32 224.1 14.0 179 200-379 138-320 (404)
19 KOG0740 AAA+-type ATPase [Post 99.9 3.2E-27 6.8E-32 237.2 12.7 184 195-380 139-323 (428)
20 TIGR01243 CDC48 AAA family ATP 99.9 1.6E-26 3.5E-31 250.2 16.9 181 197-379 441-624 (733)
21 PTZ00454 26S protease regulato 99.9 2.4E-26 5.3E-31 232.2 16.6 177 202-379 138-318 (398)
22 TIGR03689 pup_AAA proteasome A 99.9 5.2E-26 1.1E-30 235.0 14.8 179 199-379 172-367 (512)
23 PRK03992 proteasome-activating 99.9 1.3E-25 2.8E-30 226.8 15.9 180 199-379 121-304 (389)
24 COG0465 HflB ATP-dependent Zn 99.9 6.4E-26 1.4E-30 236.0 13.7 175 203-379 144-322 (596)
25 KOG0651 26S proteasome regulat 99.9 2.6E-25 5.6E-30 213.0 14.4 176 202-378 125-304 (388)
26 CHL00195 ycf46 Ycf46; Provisio 99.9 2.2E-24 4.8E-29 222.7 19.4 170 204-379 223-394 (489)
27 TIGR01241 FtsH_fam ATP-depende 99.9 7.5E-25 1.6E-29 227.5 15.3 176 202-379 48-227 (495)
28 PTZ00361 26 proteosome regulat 99.9 7.3E-25 1.6E-29 223.4 14.1 178 201-379 175-356 (438)
29 PLN00020 ribulose bisphosphate 99.9 8.3E-24 1.8E-28 208.8 13.0 137 239-379 145-300 (413)
30 TIGR01242 26Sp45 26S proteasom 99.9 2.3E-23 5E-28 208.4 15.3 178 201-379 114-295 (364)
31 KOG0732 AAA+-type ATPase conta 99.9 2.4E-23 5.2E-28 225.6 12.7 175 202-379 258-440 (1080)
32 CHL00176 ftsH cell division pr 99.9 1E-22 2.2E-27 216.3 15.5 175 203-379 177-355 (638)
33 TIGR01243 CDC48 AAA family ATP 99.9 3.4E-22 7.3E-27 216.6 15.6 174 203-379 172-348 (733)
34 PF00004 AAA: ATPase family as 99.9 7.9E-22 1.7E-26 166.7 14.3 130 245-376 1-132 (132)
35 KOG0730 AAA+-type ATPase [Post 99.9 5.5E-22 1.2E-26 205.3 14.3 171 204-379 180-353 (693)
36 PRK10733 hflB ATP-dependent me 99.9 4.3E-21 9.3E-26 205.0 15.2 174 204-379 147-324 (644)
37 CHL00206 ycf2 Ycf2; Provisiona 99.9 1.6E-21 3.4E-26 219.6 12.1 133 239-379 1627-1806(2281)
38 KOG0741 AAA+-type ATPase [Post 99.8 6.2E-21 1.3E-25 193.0 10.9 176 203-379 213-403 (744)
39 TIGR02881 spore_V_K stage V sp 99.8 3.3E-18 7.1E-23 163.7 13.0 161 207-378 4-179 (261)
40 CHL00181 cbbX CbbX; Provisiona 99.7 7.9E-18 1.7E-22 163.6 12.3 161 208-379 22-198 (287)
41 TIGR02880 cbbX_cfxQ probable R 99.7 1.8E-17 3.8E-22 161.0 12.8 158 210-378 23-196 (284)
42 KOG0742 AAA+-type ATPase [Post 99.7 4.8E-17 1E-21 161.0 14.9 167 204-379 350-517 (630)
43 KOG0744 AAA+-type ATPase [Post 99.7 9.2E-18 2E-22 162.1 9.3 171 208-379 141-329 (423)
44 KOG0743 AAA+-type ATPase [Post 99.7 1.7E-17 3.7E-22 166.6 9.9 163 206-376 198-369 (457)
45 PF05496 RuvB_N: Holliday junc 99.6 1.2E-15 2.6E-20 142.3 11.7 145 203-375 18-177 (233)
46 TIGR02639 ClpA ATP-dependent C 99.6 2.3E-15 5.1E-20 163.3 14.4 162 196-379 169-347 (731)
47 TIGR00763 lon ATP-dependent pr 99.6 3.3E-15 7.2E-20 163.1 13.6 153 209-378 320-493 (775)
48 PRK11034 clpA ATP-dependent Cl 99.5 3E-14 6.4E-19 154.4 12.9 164 194-379 171-351 (758)
49 TIGR00635 ruvB Holliday juncti 99.5 8.6E-14 1.9E-18 135.4 13.5 145 207-379 2-161 (305)
50 COG2256 MGS1 ATPase related to 99.5 5.5E-14 1.2E-18 139.6 11.7 134 204-375 19-161 (436)
51 PRK10865 protein disaggregatio 99.5 8.9E-14 1.9E-18 153.1 13.7 162 195-379 164-343 (857)
52 PRK00080 ruvB Holliday junctio 99.5 1.5E-13 3.2E-18 135.8 13.4 148 204-379 20-182 (328)
53 TIGR03345 VI_ClpV1 type VI sec 99.5 1.2E-13 2.6E-18 151.8 13.9 162 195-379 173-352 (852)
54 CHL00095 clpC Clp protease ATP 99.5 9.1E-14 2E-18 152.7 12.2 162 194-378 164-342 (821)
55 KOG2004 Mitochondrial ATP-depe 99.5 1.2E-13 2.6E-18 144.6 12.1 146 209-370 411-577 (906)
56 COG0466 Lon ATP-dependent Lon 99.5 1.2E-13 2.7E-18 145.0 12.2 146 209-370 323-489 (782)
57 COG2255 RuvB Holliday junction 99.5 1.2E-13 2.7E-18 131.8 10.4 146 203-376 20-180 (332)
58 cd00009 AAA The AAA+ (ATPases 99.5 1.5E-12 3.2E-17 109.7 14.6 122 241-375 18-150 (151)
59 TIGR03346 chaperone_ClpB ATP-d 99.5 5E-13 1.1E-17 147.4 14.1 163 194-379 158-338 (852)
60 PRK12323 DNA polymerase III su 99.4 4.6E-13 1E-17 141.3 11.4 143 202-378 9-184 (700)
61 PRK14956 DNA polymerase III su 99.4 8.8E-13 1.9E-17 135.6 12.9 142 202-377 11-180 (484)
62 PRK07940 DNA polymerase III su 99.4 1.1E-12 2.4E-17 132.9 12.9 149 207-379 3-178 (394)
63 PRK14962 DNA polymerase III su 99.4 1.4E-12 3.1E-17 134.8 13.5 144 201-378 6-177 (472)
64 PHA02544 44 clamp loader, smal 99.4 2.2E-12 4.9E-17 126.1 13.9 148 202-379 14-162 (316)
65 PRK07003 DNA polymerase III su 99.4 1.4E-12 3.1E-17 139.3 12.4 142 202-377 9-178 (830)
66 PRK10787 DNA-binding ATP-depen 99.4 2.6E-12 5.6E-17 140.2 13.4 151 209-377 322-493 (784)
67 TIGR00390 hslU ATP-dependent p 99.4 1.5E-12 3.3E-17 131.5 10.5 89 209-297 12-104 (441)
68 PRK13342 recombination factor 99.4 3.8E-12 8.1E-17 129.8 13.2 137 204-378 7-152 (413)
69 PRK05342 clpX ATP-dependent pr 99.4 2.3E-12 5E-17 131.2 11.5 131 210-340 72-213 (412)
70 PRK05201 hslU ATP-dependent pr 99.4 1.6E-12 3.4E-17 131.5 9.6 89 209-297 15-107 (443)
71 KOG0735 AAA+-type ATPase [Post 99.4 2.8E-12 6.1E-17 134.3 11.5 139 241-379 430-575 (952)
72 PLN03025 replication factor C 99.4 6.2E-12 1.3E-16 123.9 13.4 144 203-378 7-159 (319)
73 KOG2028 ATPase related to the 99.4 6.6E-12 1.4E-16 123.5 13.3 109 243-376 163-281 (554)
74 PRK07994 DNA polymerase III su 99.4 4.5E-12 9.8E-17 134.9 13.0 142 203-378 10-179 (647)
75 KOG0736 Peroxisome assembly fa 99.4 4.3E-12 9.3E-17 134.0 12.1 137 240-379 429-565 (953)
76 PRK14961 DNA polymerase III su 99.4 5.5E-12 1.2E-16 126.5 12.5 143 202-378 9-179 (363)
77 PRK11034 clpA ATP-dependent Cl 99.4 5.5E-12 1.2E-16 136.9 13.1 153 210-378 459-654 (758)
78 PRK14958 DNA polymerase III su 99.3 4.6E-12 1E-16 132.3 11.8 141 202-376 9-177 (509)
79 PRK14960 DNA polymerase III su 99.3 6.6E-12 1.4E-16 132.9 13.0 143 202-378 8-178 (702)
80 PRK14949 DNA polymerase III su 99.3 7.7E-12 1.7E-16 135.8 13.6 142 202-377 9-178 (944)
81 PRK04195 replication factor C 99.3 1.2E-11 2.7E-16 128.4 14.2 148 203-379 8-162 (482)
82 TIGR02902 spore_lonB ATP-depen 99.3 1E-11 2.3E-16 130.4 13.6 184 165-377 16-263 (531)
83 TIGR00382 clpX endopeptidase C 99.3 1E-11 2.2E-16 126.2 11.7 148 209-356 77-247 (413)
84 TIGR02640 gas_vesic_GvpN gas v 99.3 2.9E-11 6.2E-16 116.1 14.2 124 241-379 20-187 (262)
85 PRK14952 DNA polymerase III su 99.3 2.3E-11 4.9E-16 128.6 14.1 144 201-378 5-178 (584)
86 PRK14963 DNA polymerase III su 99.3 1.9E-11 4.1E-16 127.5 13.2 145 200-378 5-176 (504)
87 PHA02244 ATPase-like protein 99.3 2.1E-11 4.4E-16 121.7 12.7 127 240-378 117-262 (383)
88 PRK07764 DNA polymerase III su 99.3 2E-11 4.4E-16 133.5 13.5 148 201-378 7-180 (824)
89 PRK06645 DNA polymerase III su 99.3 2.7E-11 5.8E-16 126.2 13.4 143 202-378 14-188 (507)
90 PRK14969 DNA polymerase III su 99.3 1.6E-11 3.6E-16 128.7 11.6 143 202-378 9-179 (527)
91 PRK05563 DNA polymerase III su 99.3 2.5E-11 5.4E-16 128.2 12.7 145 200-378 7-179 (559)
92 KOG0989 Replication factor C, 99.3 1.7E-11 3.7E-16 118.3 10.3 144 203-377 30-189 (346)
93 smart00382 AAA ATPases associa 99.3 2.8E-11 6.1E-16 100.6 10.2 128 242-377 2-147 (148)
94 PRK14964 DNA polymerase III su 99.3 3.3E-11 7.1E-16 124.9 12.7 143 202-378 6-176 (491)
95 PRK14957 DNA polymerase III su 99.3 4.9E-11 1.1E-15 125.2 13.8 142 203-378 10-179 (546)
96 PRK08691 DNA polymerase III su 99.3 3.3E-11 7.1E-16 128.5 12.6 142 202-377 9-178 (709)
97 TIGR02639 ClpA ATP-dependent C 99.3 5.3E-11 1.1E-15 129.5 14.3 152 209-378 454-650 (731)
98 PF07728 AAA_5: AAA domain (dy 99.3 3.9E-12 8.5E-17 109.6 4.4 110 244-368 1-139 (139)
99 PRK12402 replication factor C 99.3 7.1E-11 1.5E-15 115.9 13.7 148 202-378 8-185 (337)
100 PRK14951 DNA polymerase III su 99.3 4E-11 8.6E-16 127.4 12.6 143 202-378 9-184 (618)
101 PF05673 DUF815: Protein of un 99.2 7.5E-11 1.6E-15 111.5 12.5 147 204-379 22-196 (249)
102 PRK14959 DNA polymerase III su 99.2 5.6E-11 1.2E-15 125.8 12.9 143 202-378 9-179 (624)
103 PRK14965 DNA polymerase III su 99.2 4.1E-11 8.8E-16 127.0 11.9 144 201-378 8-179 (576)
104 TIGR02397 dnaX_nterm DNA polym 99.2 6.5E-11 1.4E-15 117.3 12.2 142 203-378 8-177 (355)
105 PRK07133 DNA polymerase III su 99.2 6.8E-11 1.5E-15 126.9 13.1 150 201-378 10-178 (725)
106 PRK05896 DNA polymerase III su 99.2 5.9E-11 1.3E-15 125.2 12.4 143 202-378 9-179 (605)
107 COG3604 FhlA Transcriptional r 99.2 1E-11 2.2E-16 126.4 6.2 152 204-375 218-385 (550)
108 PF07724 AAA_2: AAA domain (Cd 99.2 4E-11 8.6E-16 108.3 9.2 114 241-358 2-131 (171)
109 TIGR02928 orc1/cdc6 family rep 99.2 3E-10 6.4E-15 113.1 15.2 156 205-378 11-200 (365)
110 COG0542 clpA ATP-binding subun 99.2 9.6E-11 2.1E-15 126.0 12.1 152 209-378 491-693 (786)
111 COG3829 RocR Transcriptional r 99.2 1.5E-11 3.3E-16 126.5 5.3 152 204-375 240-408 (560)
112 PF00158 Sigma54_activat: Sigm 99.2 4.9E-11 1.1E-15 107.4 8.1 136 211-374 1-160 (168)
113 PRK06647 DNA polymerase III su 99.2 1.6E-10 3.5E-15 122.0 13.2 143 202-378 9-179 (563)
114 PRK14970 DNA polymerase III su 99.2 1.8E-10 4E-15 115.3 12.8 142 203-378 11-168 (367)
115 PRK00149 dnaA chromosomal repl 99.2 1.1E-10 2.4E-15 120.2 11.3 125 242-379 148-282 (450)
116 COG0542 clpA ATP-binding subun 99.2 1.6E-10 3.4E-15 124.3 12.1 164 194-379 155-335 (786)
117 PRK14948 DNA polymerase III su 99.2 2.6E-10 5.7E-15 121.7 13.7 142 203-378 10-181 (620)
118 PRK06305 DNA polymerase III su 99.2 3E-10 6.6E-15 117.1 13.7 142 203-378 11-181 (451)
119 COG0464 SpoVK ATPases of the A 99.2 1.3E-10 2.8E-15 120.9 10.9 136 239-379 15-152 (494)
120 PRK14955 DNA polymerase III su 99.2 2E-10 4.3E-15 116.7 11.7 143 202-378 9-187 (397)
121 PF01078 Mg_chelatase: Magnesi 99.2 3.1E-11 6.6E-16 111.7 5.2 45 208-266 2-46 (206)
122 PRK14953 DNA polymerase III su 99.2 3E-10 6.5E-15 118.1 13.0 143 202-378 9-179 (486)
123 TIGR03420 DnaA_homol_Hda DnaA 99.2 3.2E-10 7E-15 105.2 11.8 137 207-378 13-160 (226)
124 COG0714 MoxR-like ATPases [Gen 99.2 1.8E-10 3.8E-15 114.0 10.7 142 210-378 25-190 (329)
125 PRK13341 recombination factor 99.1 1.9E-10 4.1E-15 124.5 11.7 137 204-378 23-169 (725)
126 PRK08084 DNA replication initi 99.1 4.9E-10 1.1E-14 105.9 13.0 142 204-378 17-168 (235)
127 COG1219 ClpX ATP-dependent pro 99.1 6E-11 1.3E-15 115.1 6.5 133 209-341 61-203 (408)
128 PRK09111 DNA polymerase III su 99.1 4.2E-10 9.2E-15 119.5 13.5 148 203-378 18-192 (598)
129 PRK06893 DNA replication initi 99.1 2.8E-10 6E-15 107.2 10.8 116 243-379 40-163 (229)
130 TIGR02903 spore_lon_C ATP-depe 99.1 6.5E-10 1.4E-14 118.8 14.8 70 197-278 142-221 (615)
131 TIGR01650 PD_CobS cobaltochela 99.1 8.7E-11 1.9E-15 115.8 7.4 128 241-379 63-222 (327)
132 TIGR03345 VI_ClpV1 type VI sec 99.1 4.5E-10 9.8E-15 123.9 13.4 130 209-356 566-718 (852)
133 PRK13407 bchI magnesium chelat 99.1 1.5E-10 3.3E-15 114.9 8.6 149 205-378 4-203 (334)
134 PRK00440 rfc replication facto 99.1 7.6E-10 1.7E-14 107.7 13.4 141 203-378 11-162 (319)
135 PRK11331 5-methylcytosine-spec 99.1 6.1E-10 1.3E-14 113.8 12.8 141 208-375 174-356 (459)
136 PRK08451 DNA polymerase III su 99.1 5.5E-10 1.2E-14 116.9 12.6 143 202-378 7-177 (535)
137 PRK08903 DnaA regulatory inact 99.1 5.8E-10 1.3E-14 104.2 11.4 135 205-378 14-158 (227)
138 PRK00411 cdc6 cell division co 99.1 2.4E-09 5.3E-14 107.7 16.6 156 204-378 25-208 (394)
139 TIGR00362 DnaA chromosomal rep 99.1 1.7E-10 3.7E-15 117.2 7.8 124 242-379 136-270 (405)
140 PRK14950 DNA polymerase III su 99.1 7.5E-10 1.6E-14 117.7 12.7 144 201-378 8-180 (585)
141 PRK14954 DNA polymerase III su 99.1 1.1E-09 2.3E-14 116.8 13.9 149 202-378 9-187 (620)
142 COG0470 HolB ATPase involved i 99.1 7E-10 1.5E-14 108.0 11.5 139 210-377 2-168 (325)
143 COG2204 AtoC Response regulato 99.1 8.9E-11 1.9E-15 120.3 5.3 154 206-379 138-314 (464)
144 PRK10865 protein disaggregatio 99.1 1.8E-09 4E-14 119.3 15.9 155 208-378 567-767 (857)
145 PF00308 Bac_DnaA: Bacterial d 99.1 1.4E-09 3E-14 101.9 12.7 151 204-378 3-167 (219)
146 CHL00095 clpC Clp protease ATP 99.1 9.9E-10 2.2E-14 121.0 13.5 152 209-378 509-720 (821)
147 TIGR03346 chaperone_ClpB ATP-d 99.1 1.7E-09 3.6E-14 119.6 14.5 155 208-378 564-764 (852)
148 PRK05564 DNA polymerase III su 99.1 1.5E-09 3.3E-14 106.6 12.6 140 207-378 2-153 (313)
149 PTZ00112 origin recognition co 99.0 1.2E-09 2.5E-14 118.2 12.2 151 208-378 754-937 (1164)
150 CHL00081 chlI Mg-protoporyphyr 99.0 7.1E-10 1.5E-14 110.6 9.9 151 203-379 11-220 (350)
151 KOG0745 Putative ATP-dependent 99.0 8.9E-10 1.9E-14 110.6 9.9 135 243-378 227-387 (564)
152 PRK13531 regulatory ATPase Rav 99.0 1.2E-09 2.5E-14 112.7 10.3 143 209-378 20-181 (498)
153 KOG0741 AAA+-type ATPase [Post 99.0 1.2E-09 2.6E-14 111.8 10.1 134 241-377 537-672 (744)
154 TIGR02442 Cob-chelat-sub cobal 99.0 9.2E-10 2E-14 118.0 9.7 144 207-378 2-201 (633)
155 COG2812 DnaX DNA polymerase II 99.0 5.4E-10 1.2E-14 116.0 7.3 145 199-370 6-172 (515)
156 PRK07471 DNA polymerase III su 99.0 3.5E-09 7.6E-14 106.5 12.4 146 205-378 15-201 (365)
157 PRK14088 dnaA chromosomal repl 99.0 9.6E-10 2.1E-14 113.1 8.5 124 243-379 131-265 (440)
158 TIGR00368 Mg chelatase-related 99.0 1.6E-09 3.4E-14 113.0 9.2 142 207-378 190-392 (499)
159 PRK14971 DNA polymerase III su 99.0 5.1E-09 1.1E-13 111.8 13.3 142 203-378 11-181 (614)
160 PRK09112 DNA polymerase III su 99.0 7E-09 1.5E-13 103.8 13.5 146 205-378 19-201 (351)
161 PRK14086 dnaA chromosomal repl 99.0 1.2E-09 2.7E-14 115.4 8.4 123 243-379 315-448 (617)
162 PF07726 AAA_3: ATPase family 99.0 1.7E-10 3.7E-15 99.1 1.4 110 244-369 1-130 (131)
163 PRK12422 chromosomal replicati 99.0 1.7E-09 3.8E-14 111.3 9.0 123 242-378 141-272 (445)
164 TIGR00678 holB DNA polymerase 99.0 4E-09 8.7E-14 95.8 10.4 116 241-378 13-156 (188)
165 TIGR02974 phageshock_pspF psp 98.9 1.4E-09 3E-14 108.0 7.4 142 211-379 1-172 (329)
166 TIGR02030 BchI-ChlI magnesium 98.9 2.6E-09 5.6E-14 106.3 9.3 144 207-378 2-206 (337)
167 PF13177 DNA_pol3_delta2: DNA 98.9 8.7E-09 1.9E-13 92.1 11.7 133 213-376 1-160 (162)
168 PRK08727 hypothetical protein; 98.9 8.2E-09 1.8E-13 97.5 12.1 113 243-378 42-163 (233)
169 PRK08058 DNA polymerase III su 98.9 6.4E-09 1.4E-13 103.2 11.4 139 207-378 3-170 (329)
170 PRK05707 DNA polymerase III su 98.9 6.4E-09 1.4E-13 103.2 10.9 119 240-378 20-166 (328)
171 PRK15424 propionate catabolism 98.9 1.7E-09 3.7E-14 113.6 7.0 147 206-379 216-401 (538)
172 PRK05642 DNA replication initi 98.9 5.1E-09 1.1E-13 99.0 9.3 114 243-378 46-167 (234)
173 PRK12377 putative replication 98.9 2E-08 4.3E-13 96.0 13.2 122 242-378 101-236 (248)
174 PF14532 Sigma54_activ_2: Sigm 98.9 3.2E-09 7E-14 91.9 7.1 126 213-378 2-137 (138)
175 PRK08116 hypothetical protein; 98.9 6.3E-09 1.4E-13 100.4 9.8 124 241-379 113-251 (268)
176 PRK08181 transposase; Validate 98.9 4.2E-09 9.1E-14 101.7 7.8 122 241-378 105-243 (269)
177 PRK07399 DNA polymerase III su 98.9 1.3E-08 2.7E-13 100.5 11.2 143 207-378 2-183 (314)
178 TIGR02329 propionate_PrpR prop 98.9 3E-09 6.5E-14 111.6 7.0 147 206-379 209-386 (526)
179 PRK14087 dnaA chromosomal repl 98.9 8.9E-09 1.9E-13 106.3 10.3 122 242-378 141-274 (450)
180 PRK11608 pspF phage shock prot 98.9 4.3E-09 9.3E-14 104.3 7.6 145 208-379 5-179 (326)
181 PRK15429 formate hydrogenlyase 98.8 1E-08 2.2E-13 111.0 10.2 147 205-379 372-549 (686)
182 KOG0991 Replication factor C, 98.8 7.7E-09 1.7E-13 97.0 7.8 137 202-369 20-165 (333)
183 COG1221 PspF Transcriptional r 98.8 3.4E-09 7.5E-14 107.0 5.9 134 205-366 74-231 (403)
184 PRK10820 DNA-binding transcrip 98.8 9.6E-09 2.1E-13 107.9 9.1 149 204-379 199-377 (520)
185 PRK09862 putative ATP-dependen 98.8 1.3E-08 2.8E-13 106.1 9.8 142 207-378 189-389 (506)
186 PRK05022 anaerobic nitric oxid 98.8 1.7E-08 3.6E-13 105.8 10.8 146 207-379 185-360 (509)
187 TIGR01817 nifA Nif-specific re 98.8 1.2E-08 2.6E-13 107.3 9.6 149 204-379 191-369 (534)
188 COG1220 HslU ATP-dependent pro 98.8 2E-08 4.3E-13 98.4 9.7 70 209-278 15-86 (444)
189 COG2607 Predicted ATPase (AAA+ 98.8 6.5E-08 1.4E-12 91.1 12.7 146 205-379 56-228 (287)
190 PRK07952 DNA replication prote 98.8 9.2E-08 2E-12 91.2 13.8 121 243-378 100-235 (244)
191 PRK11388 DNA-binding transcrip 98.8 2E-08 4.4E-13 107.8 10.0 148 205-379 321-495 (638)
192 PRK06620 hypothetical protein; 98.8 3.4E-08 7.4E-13 92.3 9.9 100 243-378 45-148 (214)
193 PRK06526 transposase; Provisio 98.8 1.5E-08 3.3E-13 97.1 7.3 73 240-314 96-172 (254)
194 COG1474 CDC6 Cdc6-related prot 98.8 1.1E-07 2.3E-12 95.8 13.6 147 209-376 17-189 (366)
195 smart00350 MCM minichromosome 98.8 2E-08 4.3E-13 105.2 8.4 153 209-378 203-388 (509)
196 PRK06871 DNA polymerase III su 98.7 1.3E-07 2.8E-12 93.7 12.9 117 241-378 23-167 (325)
197 smart00763 AAA_PrkA PrkA AAA d 98.7 1.4E-07 2.9E-12 94.3 12.8 62 208-275 49-118 (361)
198 PRK09183 transposase/IS protei 98.7 6.5E-08 1.4E-12 93.0 9.3 74 240-314 100-177 (259)
199 COG0606 Predicted ATPase with 98.7 1E-08 2.2E-13 104.6 3.9 47 206-266 176-222 (490)
200 PF01695 IstB_IS21: IstB-like 98.7 9.8E-09 2.1E-13 93.3 3.3 72 240-313 45-120 (178)
201 PRK06964 DNA polymerase III su 98.7 9.6E-08 2.1E-12 95.3 10.5 122 240-378 19-192 (342)
202 KOG1969 DNA replication checkp 98.7 1.4E-07 3.1E-12 100.0 12.2 120 243-379 327-470 (877)
203 PRK07993 DNA polymerase III su 98.7 1.2E-07 2.5E-12 94.5 10.9 122 240-378 22-168 (334)
204 PRK06835 DNA replication prote 98.7 6.3E-08 1.4E-12 96.1 8.7 113 242-369 183-306 (329)
205 COG0593 DnaA ATPase involved i 98.7 1.1E-07 2.5E-12 96.3 10.1 124 241-378 112-245 (408)
206 PRK08769 DNA polymerase III su 98.6 2.3E-07 5.1E-12 91.7 11.8 121 241-378 25-173 (319)
207 COG1484 DnaC DNA replication p 98.6 1.1E-07 2.3E-12 91.3 8.7 72 241-314 104-180 (254)
208 PRK06090 DNA polymerase III su 98.6 4.8E-07 1E-11 89.5 13.2 119 240-378 23-168 (319)
209 PTZ00111 DNA replication licen 98.6 1.3E-07 2.8E-12 103.5 9.5 148 208-372 449-638 (915)
210 PRK04132 replication factor C 98.6 1.9E-07 4.1E-12 102.4 10.7 116 240-378 562-690 (846)
211 KOG1051 Chaperone HSP104 and r 98.6 4.2E-07 9.1E-12 99.5 12.5 131 209-358 562-712 (898)
212 PRK06921 hypothetical protein; 98.6 3E-07 6.4E-12 88.8 9.9 68 242-312 117-188 (266)
213 TIGR00764 lon_rel lon-related 98.6 2.7E-07 5.8E-12 98.7 10.4 53 203-269 12-64 (608)
214 TIGR02031 BchD-ChlD magnesium 98.6 2.5E-07 5.4E-12 98.6 9.8 122 243-377 17-160 (589)
215 PRK08939 primosomal protein Dn 98.5 3.3E-07 7.2E-12 90.2 9.8 71 241-313 155-229 (306)
216 PF13173 AAA_14: AAA domain 98.5 4E-07 8.7E-12 77.8 8.2 69 243-313 3-73 (128)
217 PRK08699 DNA polymerase III su 98.5 4.8E-07 1E-11 89.8 9.8 122 240-378 19-173 (325)
218 TIGR02915 PEP_resp_reg putativ 98.5 1.3E-07 2.8E-12 96.8 5.9 145 208-379 138-312 (445)
219 COG1239 ChlI Mg-chelatase subu 98.5 6.1E-07 1.3E-11 90.5 10.6 148 205-378 13-219 (423)
220 PRK09087 hypothetical protein; 98.5 3.7E-07 8E-12 86.0 8.4 106 242-378 44-154 (226)
221 PF13401 AAA_22: AAA domain; P 98.5 2E-06 4.3E-11 72.6 11.0 73 242-314 4-100 (131)
222 PF03969 AFG1_ATPase: AFG1-lik 98.4 6.6E-07 1.4E-11 90.0 9.0 103 240-358 60-169 (362)
223 PRK10923 glnG nitrogen regulat 98.4 6E-07 1.3E-11 92.6 9.0 143 207-379 136-311 (469)
224 TIGR00602 rad24 checkpoint pro 98.4 1.8E-06 3.9E-11 92.4 12.4 61 203-270 78-138 (637)
225 cd01120 RecA-like_NTPases RecA 98.4 3.1E-06 6.8E-11 73.0 11.3 72 245-316 2-100 (165)
226 PRK11361 acetoacetate metaboli 98.4 1.1E-06 2.3E-11 90.2 9.8 145 208-379 142-316 (457)
227 KOG0990 Replication factor C, 98.4 3.8E-07 8.2E-12 89.0 4.8 139 201-370 33-184 (360)
228 PLN03140 ABC transporter G fam 98.4 2.9E-07 6.2E-12 106.9 4.5 125 139-266 83-215 (1470)
229 PRK05917 DNA polymerase III su 98.3 6.3E-06 1.4E-10 80.4 10.7 116 241-376 18-153 (290)
230 COG1485 Predicted ATPase [Gene 98.2 9.2E-06 2E-10 80.5 10.8 103 239-358 62-172 (367)
231 KOG2035 Replication factor C, 98.2 1E-05 2.3E-10 77.8 10.9 142 204-379 8-188 (351)
232 TIGR03015 pepcterm_ATPase puta 98.2 3.5E-05 7.5E-10 73.3 13.4 26 242-267 43-68 (269)
233 PRK15115 response regulator Gl 98.2 4.1E-06 9E-11 85.7 7.5 70 241-316 156-243 (444)
234 TIGR01818 ntrC nitrogen regula 98.2 2.4E-06 5.2E-11 87.8 5.7 147 209-379 134-307 (463)
235 PF06068 TIP49: TIP49 C-termin 98.1 8E-06 1.7E-10 81.7 8.3 77 206-289 21-99 (398)
236 PF12775 AAA_7: P-loop contain 98.1 1.2E-05 2.7E-10 77.8 9.3 127 241-379 32-182 (272)
237 COG1224 TIP49 DNA helicase TIP 98.1 6.5E-06 1.4E-10 81.6 7.4 86 205-298 35-122 (450)
238 PRK05818 DNA polymerase III su 98.1 1.8E-05 3.9E-10 76.0 9.7 121 240-377 5-147 (261)
239 TIGR02237 recomb_radB DNA repa 98.1 3.2E-05 7E-10 71.1 11.1 81 235-315 5-111 (209)
240 PHA00729 NTP-binding motif con 98.1 1.3E-05 2.7E-10 75.6 8.0 25 243-267 18-42 (226)
241 TIGR01618 phage_P_loop phage n 98.1 8.9E-06 1.9E-10 76.4 6.9 111 242-354 12-142 (220)
242 PF12774 AAA_6: Hydrolytic ATP 98.1 4.5E-05 9.7E-10 72.3 11.6 124 242-379 32-169 (231)
243 COG3283 TyrR Transcriptional r 98.0 4.9E-06 1.1E-10 82.5 5.0 128 204-357 199-344 (511)
244 PF01637 Arch_ATPase: Archaeal 98.0 1.7E-05 3.8E-10 72.6 8.5 44 212-267 2-45 (234)
245 PF05729 NACHT: NACHT domain 98.0 6.7E-05 1.5E-09 65.2 11.5 23 244-266 2-24 (166)
246 KOG0478 DNA replication licens 98.0 1.1E-05 2.4E-10 85.4 7.1 156 210-372 430-607 (804)
247 PF05621 TniB: Bacterial TniB 98.0 6.4E-05 1.4E-09 73.5 12.0 100 210-315 35-159 (302)
248 cd01124 KaiC KaiC is a circadi 98.0 6.3E-05 1.4E-09 67.4 10.8 71 245-315 2-109 (187)
249 PRK13406 bchD magnesium chelat 98.0 6.8E-06 1.5E-10 87.5 5.1 121 243-379 26-171 (584)
250 PRK10365 transcriptional regul 98.0 2.9E-05 6.4E-10 79.2 9.2 91 210-316 140-248 (441)
251 PRK07276 DNA polymerase III su 97.9 7.3E-05 1.6E-09 73.1 11.3 118 240-376 22-162 (290)
252 PRK14722 flhF flagellar biosyn 97.9 5.8E-05 1.3E-09 76.3 10.7 113 238-364 133-266 (374)
253 PF00493 MCM: MCM2/3/5 family 97.9 1.1E-06 2.3E-11 87.5 -2.3 149 209-373 24-203 (331)
254 COG1241 MCM2 Predicted ATPase 97.9 1.3E-05 2.9E-10 86.0 5.8 156 208-378 285-468 (682)
255 PF00910 RNA_helicase: RNA hel 97.9 2.4E-05 5.2E-10 64.9 5.7 23 245-267 1-23 (107)
256 PRK09361 radB DNA repair and r 97.9 8E-05 1.7E-09 69.4 9.8 41 236-276 17-60 (225)
257 PF03215 Rad17: Rad17 cell cyc 97.9 7.4E-05 1.6E-09 78.6 10.3 64 204-274 14-77 (519)
258 KOG1051 Chaperone HSP104 and r 97.9 0.00011 2.3E-09 81.0 11.7 149 208-379 185-352 (898)
259 PRK08533 flagellar accessory p 97.9 0.00018 3.9E-09 67.9 11.9 79 236-314 18-130 (230)
260 KOG2228 Origin recognition com 97.9 8.5E-05 1.8E-09 73.4 9.8 149 210-378 25-205 (408)
261 KOG1514 Origin recognition com 97.8 0.0001 2.2E-09 78.6 10.8 105 242-359 422-553 (767)
262 COG3284 AcoR Transcriptional a 97.8 5E-06 1.1E-10 87.5 1.1 126 240-376 334-475 (606)
263 PF13207 AAA_17: AAA domain; P 97.8 1.8E-05 3.8E-10 66.1 4.0 31 245-275 2-32 (121)
264 PRK11823 DNA repair protein Ra 97.8 0.00014 3E-09 75.3 10.9 80 237-316 75-171 (446)
265 KOG2383 Predicted ATPase [Gene 97.8 0.00025 5.5E-09 71.4 12.2 28 239-266 111-138 (467)
266 cd01121 Sms Sms (bacterial rad 97.8 0.00015 3.3E-09 73.3 10.9 79 237-315 77-172 (372)
267 PRK07132 DNA polymerase III su 97.8 0.00023 4.9E-09 70.0 11.8 115 242-378 18-150 (299)
268 PRK08118 topology modulation p 97.8 6.2E-05 1.3E-09 67.6 6.8 34 243-276 2-35 (167)
269 KOG0065 Pleiotropic drug resis 97.8 1.2E-05 2.6E-10 90.6 2.5 122 139-266 41-165 (1391)
270 cd01394 radB RadB. The archaea 97.7 0.00022 4.7E-09 66.1 10.1 39 237-275 14-55 (218)
271 PHA02624 large T antigen; Prov 97.7 0.0001 2.2E-09 78.1 8.7 123 239-376 428-561 (647)
272 PF13191 AAA_16: AAA ATPase do 97.7 0.00012 2.6E-09 65.0 7.9 59 211-278 2-63 (185)
273 TIGR02012 tigrfam_recA protein 97.7 0.00029 6.4E-09 69.8 11.2 80 237-316 50-148 (321)
274 COG1618 Predicted nucleotide k 97.7 0.00037 8E-09 62.4 10.6 25 242-266 5-29 (179)
275 PRK04296 thymidine kinase; Pro 97.7 0.00041 8.9E-09 63.5 11.4 32 243-274 3-37 (190)
276 cd03283 ABC_MutS-like MutS-lik 97.7 0.00031 6.6E-09 64.9 10.5 27 240-266 23-49 (199)
277 cd00983 recA RecA is a bacter 97.7 0.00039 8.4E-09 69.1 11.7 80 237-316 50-148 (325)
278 PF05707 Zot: Zonular occluden 97.7 8.6E-05 1.9E-09 68.0 6.6 122 245-376 3-145 (193)
279 PRK07261 topology modulation p 97.7 0.00011 2.3E-09 66.2 7.0 34 244-277 2-35 (171)
280 cd03216 ABC_Carb_Monos_I This 97.7 0.00029 6.2E-09 62.7 9.6 74 239-312 23-111 (163)
281 PRK06067 flagellar accessory p 97.7 0.00075 1.6E-08 63.4 12.6 78 237-314 20-133 (234)
282 TIGR03877 thermo_KaiC_1 KaiC d 97.6 0.0006 1.3E-08 64.4 12.0 40 236-275 15-57 (237)
283 PRK00131 aroK shikimate kinase 97.6 5.3E-05 1.2E-09 66.8 4.5 35 240-274 2-36 (175)
284 cd01393 recA_like RecA is a b 97.6 0.00039 8.5E-09 64.5 10.3 41 236-276 13-62 (226)
285 cd01123 Rad51_DMC1_radA Rad51_ 97.6 0.00035 7.6E-09 65.2 9.8 42 236-277 13-63 (235)
286 KOG0481 DNA replication licens 97.6 0.00016 3.5E-09 74.6 7.5 181 186-374 308-511 (729)
287 COG3854 SpoIIIAA ncharacterize 97.6 0.00021 4.6E-09 67.5 7.6 74 240-313 135-230 (308)
288 cd03280 ABC_MutS2 MutS2 homolo 97.6 0.00083 1.8E-08 61.7 11.1 25 239-263 24-49 (200)
289 cd03243 ABC_MutS_homologs The 97.5 0.00058 1.3E-08 62.8 10.1 25 240-264 27-51 (202)
290 PF13671 AAA_33: AAA domain; P 97.5 0.0003 6.4E-09 60.2 7.6 34 245-280 2-35 (143)
291 PRK12723 flagellar biosynthesi 97.5 0.0012 2.6E-08 67.2 13.1 108 242-362 174-304 (388)
292 PF06745 KaiC: KaiC; InterPro 97.5 0.00062 1.4E-08 63.4 10.1 77 237-313 14-127 (226)
293 KOG2170 ATPase of the AAA+ sup 97.5 0.00044 9.5E-09 67.5 9.1 98 210-315 83-192 (344)
294 KOG0480 DNA replication licens 97.5 0.0001 2.2E-09 77.7 4.9 155 206-371 342-522 (764)
295 COG4619 ABC-type uncharacteriz 97.5 0.0012 2.6E-08 59.8 11.0 28 239-266 26-53 (223)
296 PRK05800 cobU adenosylcobinami 97.5 0.00078 1.7E-08 60.8 9.8 34 244-277 3-36 (170)
297 KOG1970 Checkpoint RAD17-RFC c 97.5 0.0017 3.6E-08 67.9 13.2 34 241-274 109-142 (634)
298 PLN03210 Resistant to P. syrin 97.5 0.0013 2.7E-08 75.7 13.8 54 204-267 179-232 (1153)
299 KOG0477 DNA replication licens 97.5 0.00018 4E-09 75.7 6.3 151 209-372 449-627 (854)
300 cd00267 ABC_ATPase ABC (ATP-bi 97.5 0.00065 1.4E-08 59.7 9.0 74 239-312 22-109 (157)
301 KOG2227 Pre-initiation complex 97.5 0.0012 2.6E-08 67.8 11.9 134 208-362 149-304 (529)
302 cd03222 ABC_RNaseL_inhibitor T 97.5 0.0016 3.5E-08 59.1 11.6 74 239-312 22-100 (177)
303 PHA02774 E1; Provisional 97.5 0.00054 1.2E-08 72.4 9.5 34 242-275 434-468 (613)
304 PRK13947 shikimate kinase; Pro 97.5 0.00012 2.6E-09 64.9 4.1 31 244-274 3-33 (171)
305 cd03221 ABCF_EF-3 ABCF_EF-3 E 97.4 0.0011 2.3E-08 58.0 9.9 72 239-312 23-99 (144)
306 cd01131 PilT Pilus retraction 97.4 0.00029 6.3E-09 64.9 6.3 68 244-311 3-84 (198)
307 KOG1942 DNA helicase, TBP-inte 97.4 0.00029 6.2E-09 68.6 6.4 80 204-290 33-114 (456)
308 PRK09354 recA recombinase A; P 97.4 0.0012 2.7E-08 66.1 11.1 79 237-315 55-152 (349)
309 PRK15455 PrkA family serine pr 97.4 0.00019 4.1E-09 75.9 5.4 63 207-275 74-137 (644)
310 TIGR02688 conserved hypothetic 97.4 0.00031 6.8E-09 71.8 6.8 64 240-315 207-274 (449)
311 PRK03839 putative kinase; Prov 97.4 0.00013 2.9E-09 65.5 3.8 31 244-274 2-32 (180)
312 PF06309 Torsin: Torsin; Inte 97.4 0.00065 1.4E-08 58.4 7.8 53 209-266 25-77 (127)
313 PRK06762 hypothetical protein; 97.4 0.00065 1.4E-08 60.1 8.1 38 243-280 3-40 (166)
314 cd00544 CobU Adenosylcobinamid 97.4 0.0014 3E-08 59.2 10.2 71 245-317 2-89 (169)
315 cd03281 ABC_MSH5_euk MutS5 hom 97.4 0.0015 3.2E-08 61.0 10.6 22 243-264 30-51 (213)
316 PRK04328 hypothetical protein; 97.4 0.0024 5.3E-08 60.9 12.2 39 237-275 18-59 (249)
317 TIGR00416 sms DNA repair prote 97.4 0.0014 3.1E-08 68.0 11.1 79 237-315 89-184 (454)
318 PF13604 AAA_30: AAA domain; P 97.4 0.00029 6.3E-09 64.8 5.5 36 242-277 18-56 (196)
319 cd03238 ABC_UvrA The excision 97.4 0.003 6.5E-08 57.3 12.0 26 239-264 18-43 (176)
320 cd00464 SK Shikimate kinase (S 97.4 0.00018 4E-09 62.3 3.9 31 244-274 1-31 (154)
321 cd03228 ABCC_MRP_Like The MRP 97.3 0.0011 2.4E-08 59.2 9.0 28 239-266 25-52 (171)
322 TIGR03878 thermo_KaiC_2 KaiC d 97.3 0.0022 4.7E-08 61.6 11.6 40 236-275 30-72 (259)
323 cd03247 ABCC_cytochrome_bd The 97.3 0.0049 1.1E-07 55.4 13.2 28 239-266 25-52 (178)
324 TIGR02858 spore_III_AA stage I 97.3 0.00038 8.3E-09 67.5 6.1 69 243-311 112-204 (270)
325 PRK00625 shikimate kinase; Pro 97.3 0.00022 4.7E-09 64.6 4.1 31 244-274 2-32 (173)
326 PRK14974 cell division protein 97.3 0.003 6.4E-08 63.2 12.4 73 241-313 139-234 (336)
327 COG4650 RtcR Sigma54-dependent 97.3 0.00025 5.4E-09 69.1 4.5 77 240-316 206-297 (531)
328 cd00227 CPT Chloramphenicol (C 97.3 0.00021 4.6E-09 64.1 3.8 35 242-276 2-36 (175)
329 COG1116 TauB ABC-type nitrate/ 97.3 0.0019 4E-08 61.6 10.2 28 239-266 26-53 (248)
330 cd01122 GP4d_helicase GP4d_hel 97.3 0.0032 6.8E-08 60.2 12.0 39 237-275 25-67 (271)
331 PRK14532 adenylate kinase; Pro 97.3 0.00025 5.5E-09 64.1 4.2 30 244-273 2-31 (188)
332 PRK00771 signal recognition pa 97.3 0.0058 1.2E-07 63.2 14.5 72 240-313 93-187 (437)
333 cd03246 ABCC_Protease_Secretio 97.3 0.0039 8.5E-08 55.8 11.8 28 239-266 25-52 (173)
334 TIGR03880 KaiC_arch_3 KaiC dom 97.3 0.0034 7.3E-08 58.5 11.8 41 236-276 10-53 (224)
335 smart00534 MUTSac ATPase domai 97.3 0.0031 6.8E-08 57.3 11.3 19 245-263 2-20 (185)
336 PRK06217 hypothetical protein; 97.3 0.00028 6E-09 63.9 4.3 31 244-274 3-33 (183)
337 TIGR01359 UMP_CMP_kin_fam UMP- 97.3 0.00027 5.8E-09 63.4 4.0 33 245-279 2-34 (183)
338 KOG0482 DNA replication licens 97.3 0.00031 6.7E-09 72.5 4.9 155 209-372 342-520 (721)
339 cd03227 ABC_Class2 ABC-type Cl 97.3 0.0048 1E-07 54.8 12.0 24 242-265 21-44 (162)
340 PRK13949 shikimate kinase; Pro 97.3 0.00027 5.8E-09 63.6 3.9 32 243-274 2-33 (169)
341 COG0563 Adk Adenylate kinase a 97.2 0.00038 8.2E-09 63.4 4.7 33 244-278 2-34 (178)
342 cd03223 ABCD_peroxisomal_ALDP 97.2 0.0039 8.5E-08 55.6 11.2 28 239-266 24-51 (166)
343 PF00437 T2SE: Type II/IV secr 97.2 0.00071 1.5E-08 64.9 6.7 71 241-311 126-207 (270)
344 TIGR01420 pilT_fam pilus retra 97.2 0.00063 1.4E-08 68.0 6.5 71 241-311 121-205 (343)
345 PF00931 NB-ARC: NB-ARC domain 97.2 0.0026 5.7E-08 60.8 10.5 26 240-265 17-42 (287)
346 PRK13948 shikimate kinase; Pro 97.2 0.00041 8.8E-09 63.4 4.6 35 240-274 8-42 (182)
347 cd03230 ABC_DR_subfamily_A Thi 97.2 0.0016 3.5E-08 58.3 8.4 28 239-266 23-50 (173)
348 KOG0479 DNA replication licens 97.2 0.00096 2.1E-08 70.0 7.7 149 209-372 301-479 (818)
349 PRK14530 adenylate kinase; Pro 97.2 0.00038 8.2E-09 64.6 4.4 31 243-273 4-34 (215)
350 cd01129 PulE-GspE PulE/GspE Th 97.2 0.0014 3E-08 63.3 8.4 92 207-311 58-159 (264)
351 cd02021 GntK Gluconate kinase 97.2 0.00037 8E-09 60.6 4.1 29 245-273 2-30 (150)
352 COG5271 MDN1 AAA ATPase contai 97.2 0.00047 1E-08 79.1 5.7 131 241-375 1542-1688(4600)
353 cd02020 CMPK Cytidine monophos 97.2 0.00036 7.7E-09 59.8 3.7 30 245-274 2-31 (147)
354 PRK13765 ATP-dependent proteas 97.2 0.00047 1E-08 74.2 5.4 52 202-267 24-75 (637)
355 cd01128 rho_factor Transcripti 97.2 0.0012 2.6E-08 63.3 7.7 30 239-268 13-42 (249)
356 cd03214 ABC_Iron-Siderophores_ 97.2 0.0027 5.8E-08 57.2 9.6 28 239-266 22-49 (180)
357 TIGR02655 circ_KaiC circadian 97.2 0.0039 8.5E-08 65.2 12.0 81 235-315 256-367 (484)
358 cd01130 VirB11-like_ATPase Typ 97.2 0.0014 3E-08 59.6 7.6 72 240-311 23-110 (186)
359 KOG3347 Predicted nucleotide k 97.2 0.00035 7.6E-09 61.8 3.4 33 242-274 7-39 (176)
360 PRK10536 hypothetical protein; 97.2 0.005 1.1E-07 59.3 11.6 23 243-265 75-97 (262)
361 cd01428 ADK Adenylate kinase ( 97.1 0.00043 9.3E-09 62.4 4.1 29 245-273 2-30 (194)
362 cd00984 DnaB_C DnaB helicase C 97.1 0.0041 9E-08 58.2 10.8 38 238-275 9-50 (242)
363 PF14516 AAA_35: AAA-like doma 97.1 0.0038 8.3E-08 62.1 11.1 39 240-278 29-70 (331)
364 TIGR03881 KaiC_arch_4 KaiC dom 97.1 0.0064 1.4E-07 56.7 12.0 39 237-275 15-56 (229)
365 PRK14531 adenylate kinase; Pro 97.1 0.00047 1E-08 62.4 4.2 31 243-273 3-33 (183)
366 COG0703 AroK Shikimate kinase 97.1 0.00038 8.2E-09 63.0 3.5 33 243-275 3-35 (172)
367 TIGR00064 ftsY signal recognit 97.1 0.0067 1.5E-07 58.8 12.3 37 240-276 70-109 (272)
368 TIGR01313 therm_gnt_kin carboh 97.1 0.00043 9.4E-09 61.0 3.7 29 245-273 1-29 (163)
369 COG1373 Predicted ATPase (AAA+ 97.1 0.0035 7.5E-08 64.0 10.7 68 244-313 39-106 (398)
370 cd00046 DEXDc DEAD-like helica 97.1 0.0014 3.1E-08 53.9 6.6 24 243-266 1-24 (144)
371 PRK05973 replicative DNA helic 97.1 0.0053 1.2E-07 58.4 11.2 41 235-275 57-100 (237)
372 PRK13900 type IV secretion sys 97.1 0.0013 2.9E-08 65.5 7.5 72 240-311 158-245 (332)
373 TIGR02782 TrbB_P P-type conjug 97.1 0.0015 3.2E-08 64.2 7.6 71 241-311 131-214 (299)
374 TIGR03499 FlhF flagellar biosy 97.1 0.0035 7.7E-08 61.0 10.1 38 240-277 192-234 (282)
375 PF00448 SRP54: SRP54-type pro 97.1 0.003 6.5E-08 58.3 9.1 72 242-313 1-95 (196)
376 COG4178 ABC-type uncharacteriz 97.1 0.0027 5.8E-08 67.6 9.7 59 10-68 154-223 (604)
377 COG4088 Predicted nucleotide k 97.1 0.0039 8.4E-08 58.1 9.5 23 244-266 3-25 (261)
378 cd03213 ABCG_EPDR ABCG transpo 97.1 0.0047 1E-07 56.4 10.2 28 239-266 32-59 (194)
379 PRK04301 radA DNA repair and r 97.1 0.0032 7E-08 62.1 9.7 41 237-277 97-146 (317)
380 PRK13695 putative NTPase; Prov 97.0 0.0038 8.2E-08 55.9 9.3 23 244-266 2-24 (174)
381 PRK10416 signal recognition pa 97.0 0.015 3.2E-07 57.8 14.2 36 240-275 112-150 (318)
382 TIGR02236 recomb_radA DNA repa 97.0 0.0044 9.4E-08 60.8 10.4 41 237-277 90-139 (310)
383 TIGR02525 plasmid_TraJ plasmid 97.0 0.00093 2E-08 67.6 5.7 69 243-311 150-235 (372)
384 PRK03731 aroL shikimate kinase 97.0 0.00067 1.5E-08 60.3 4.2 32 243-274 3-34 (171)
385 cd03282 ABC_MSH4_euk MutS4 hom 97.0 0.0055 1.2E-07 56.9 10.4 25 240-264 27-51 (204)
386 PRK11889 flhF flagellar biosyn 97.0 0.01 2.2E-07 60.7 12.9 73 241-313 240-332 (436)
387 cd02027 APSK Adenosine 5'-phos 97.0 0.0024 5.3E-08 56.0 7.6 34 245-278 2-38 (149)
388 PRK05057 aroK shikimate kinase 97.0 0.00081 1.8E-08 60.5 4.6 34 242-275 4-37 (172)
389 cd00561 CobA_CobO_BtuR ATP:cor 97.0 0.011 2.5E-07 52.8 11.9 23 244-266 4-26 (159)
390 PF01745 IPT: Isopentenyl tran 97.0 0.0011 2.4E-08 61.9 5.5 39 244-282 3-41 (233)
391 PTZ00088 adenylate kinase 1; P 97.0 0.00074 1.6E-08 63.9 4.5 32 243-274 7-38 (229)
392 cd03287 ABC_MSH3_euk MutS3 hom 97.0 0.0064 1.4E-07 57.3 10.8 26 239-264 28-53 (222)
393 TIGR02788 VirB11 P-type DNA tr 97.0 0.0011 2.4E-08 65.2 5.8 73 239-311 141-228 (308)
394 smart00487 DEXDc DEAD-like hel 97.0 0.0097 2.1E-07 52.1 11.3 24 243-266 25-49 (201)
395 COG2874 FlaH Predicted ATPases 97.0 0.0069 1.5E-07 56.7 10.5 121 236-368 22-178 (235)
396 TIGR02238 recomb_DMC1 meiotic 97.0 0.0047 1E-07 61.1 10.1 42 236-277 90-140 (313)
397 cd03215 ABC_Carb_Monos_II This 97.0 0.0032 6.8E-08 56.9 8.2 28 239-266 23-50 (182)
398 PRK13946 shikimate kinase; Pro 97.0 0.00067 1.4E-08 61.6 3.8 33 243-275 11-43 (184)
399 PLN03187 meiotic recombination 97.0 0.0039 8.6E-08 62.5 9.6 41 236-276 120-169 (344)
400 cd03229 ABC_Class3 This class 97.0 0.0038 8.3E-08 56.1 8.7 28 239-266 23-50 (178)
401 PRK06547 hypothetical protein; 97.0 0.00081 1.8E-08 60.8 4.2 35 240-274 13-47 (172)
402 COG1102 Cmk Cytidylate kinase 97.0 0.00068 1.5E-08 60.7 3.5 28 245-272 3-30 (179)
403 PRK05703 flhF flagellar biosyn 97.0 0.0098 2.1E-07 61.3 12.6 38 240-277 219-261 (424)
404 PRK09376 rho transcription ter 97.0 0.0021 4.6E-08 65.3 7.4 27 240-266 167-193 (416)
405 COG1066 Sms Predicted ATP-depe 97.0 0.0061 1.3E-07 62.0 10.6 81 237-317 88-184 (456)
406 PRK14528 adenylate kinase; Pro 97.0 0.00079 1.7E-08 61.3 4.0 31 243-273 2-32 (186)
407 TIGR01360 aden_kin_iso1 adenyl 96.9 0.00081 1.8E-08 60.2 4.0 30 243-272 4-33 (188)
408 PRK08154 anaerobic benzoate ca 96.9 0.0013 2.8E-08 64.9 5.7 36 239-274 130-165 (309)
409 PLN02200 adenylate kinase fami 96.9 0.001 2.2E-08 63.1 4.7 38 240-279 41-78 (234)
410 cd03232 ABC_PDR_domain2 The pl 96.9 0.015 3.3E-07 52.9 12.3 27 239-265 30-56 (192)
411 KOG0058 Peptide exporter, ABC 96.9 0.0044 9.5E-08 66.7 9.7 28 239-266 491-518 (716)
412 PRK13539 cytochrome c biogenes 96.9 0.013 2.9E-07 53.9 11.8 28 239-266 25-52 (207)
413 PRK02496 adk adenylate kinase; 96.9 0.00084 1.8E-08 60.6 3.7 30 244-273 3-32 (184)
414 PRK13764 ATPase; Provisional 96.9 0.0017 3.7E-08 69.4 6.5 70 241-311 256-334 (602)
415 TIGR01526 nadR_NMN_Atrans nico 96.9 0.0015 3.4E-08 64.8 5.8 38 242-279 162-199 (325)
416 cd03233 ABC_PDR_domain1 The pl 96.9 0.019 4E-07 52.8 12.6 29 239-267 30-58 (202)
417 PRK12724 flagellar biosynthesi 96.9 0.014 3E-07 60.0 12.8 71 242-312 223-310 (432)
418 PRK06581 DNA polymerase III su 96.9 0.0074 1.6E-07 57.6 10.0 121 242-379 15-150 (263)
419 TIGR03574 selen_PSTK L-seryl-t 96.9 0.003 6.5E-08 60.0 7.5 34 245-278 2-38 (249)
420 PTZ00035 Rad51 protein; Provis 96.9 0.0067 1.4E-07 60.7 10.3 29 236-264 112-140 (337)
421 PRK14527 adenylate kinase; Pro 96.9 0.00084 1.8E-08 61.1 3.6 32 241-272 5-36 (191)
422 PF13238 AAA_18: AAA domain; P 96.9 0.00076 1.7E-08 56.1 2.9 22 245-266 1-22 (129)
423 PRK00889 adenylylsulfate kinas 96.9 0.005 1.1E-07 55.0 8.4 37 241-277 3-42 (175)
424 KOG1968 Replication factor C, 96.9 0.00085 1.8E-08 74.3 4.0 120 245-379 360-491 (871)
425 TIGR01351 adk adenylate kinase 96.9 0.00096 2.1E-08 61.7 3.8 29 245-273 2-30 (210)
426 COG2274 SunT ABC-type bacterio 96.9 0.0062 1.3E-07 66.5 10.5 28 239-266 496-523 (709)
427 TIGR02655 circ_KaiC circadian 96.9 0.013 2.8E-07 61.3 12.6 41 236-276 15-59 (484)
428 PF13481 AAA_25: AAA domain; P 96.8 0.008 1.7E-07 54.1 9.7 81 236-316 26-156 (193)
429 PRK13833 conjugal transfer pro 96.8 0.0032 7E-08 62.5 7.6 71 241-311 143-225 (323)
430 PRK04040 adenylate kinase; Pro 96.8 0.0013 2.8E-08 60.2 4.4 35 242-278 2-38 (188)
431 PRK13894 conjugal transfer ATP 96.8 0.004 8.6E-08 61.8 8.1 72 240-311 146-229 (319)
432 PF06414 Zeta_toxin: Zeta toxi 96.8 0.0043 9.4E-08 56.9 7.7 42 240-281 13-55 (199)
433 PRK06696 uridine kinase; Valid 96.8 0.003 6.5E-08 59.1 6.8 39 241-279 21-62 (223)
434 PRK00279 adk adenylate kinase; 96.8 0.0012 2.7E-08 61.2 4.1 30 244-273 2-31 (215)
435 PF13245 AAA_19: Part of AAA d 96.8 0.002 4.4E-08 50.4 4.6 33 243-275 11-50 (76)
436 TIGR00767 rho transcription te 96.8 0.0045 9.7E-08 63.2 8.2 28 239-266 165-192 (415)
437 PRK09302 circadian clock prote 96.8 0.011 2.4E-07 62.0 11.5 79 237-315 26-144 (509)
438 COG1121 ZnuC ABC-type Mn/Zn tr 96.8 0.013 2.9E-07 56.2 10.9 28 239-266 27-54 (254)
439 cd03115 SRP The signal recogni 96.8 0.0056 1.2E-07 54.5 7.9 33 244-276 2-37 (173)
440 COG1936 Predicted nucleotide k 96.8 0.0011 2.3E-08 60.0 3.1 30 244-274 2-31 (180)
441 TIGR02239 recomb_RAD51 DNA rep 96.8 0.0065 1.4E-07 60.2 9.0 28 237-264 91-118 (316)
442 PRK09519 recA DNA recombinatio 96.8 0.013 2.7E-07 64.5 12.0 79 237-315 55-152 (790)
443 PRK13851 type IV secretion sys 96.8 0.0017 3.7E-08 65.1 4.9 72 240-311 160-246 (344)
444 PTZ00202 tuzin; Provisional 96.7 0.037 8.1E-07 57.3 14.4 60 208-276 261-320 (550)
445 PF09848 DUF2075: Uncharacteri 96.7 0.0028 6.1E-08 63.4 6.4 24 243-266 2-25 (352)
446 PRK06995 flhF flagellar biosyn 96.7 0.014 3E-07 61.1 11.5 27 240-266 254-280 (484)
447 COG2804 PulE Type II secretory 96.7 0.0035 7.7E-08 65.1 7.1 70 240-312 256-338 (500)
448 COG1120 FepC ABC-type cobalami 96.7 0.0031 6.7E-08 60.7 6.2 28 239-266 25-52 (258)
449 PRK08099 bifunctional DNA-bind 96.7 0.0031 6.6E-08 64.5 6.6 30 243-272 220-249 (399)
450 TIGR02533 type_II_gspE general 96.7 0.0057 1.2E-07 64.1 8.7 93 207-312 220-322 (486)
451 PF00406 ADK: Adenylate kinase 96.7 0.0012 2.5E-08 57.7 3.0 33 247-281 1-33 (151)
452 COG1124 DppF ABC-type dipeptid 96.7 0.0076 1.7E-07 57.3 8.6 28 239-266 30-57 (252)
453 PRK09302 circadian clock prote 96.7 0.018 3.9E-07 60.5 12.5 79 237-315 268-377 (509)
454 PRK04182 cytidylate kinase; Pr 96.7 0.0016 3.5E-08 57.8 3.9 29 244-272 2-30 (180)
455 PRK10078 ribose 1,5-bisphospho 96.7 0.0019 4E-08 58.6 4.2 29 243-271 3-31 (186)
456 PRK05541 adenylylsulfate kinas 96.7 0.0023 4.9E-08 57.3 4.7 39 240-278 5-46 (176)
457 PHA02530 pseT polynucleotide k 96.7 0.0019 4.2E-08 62.6 4.5 34 243-278 3-37 (300)
458 COG2805 PilT Tfp pilus assembl 96.7 0.003 6.5E-08 61.8 5.7 71 241-311 124-208 (353)
459 COG0467 RAD55 RecA-superfamily 96.7 0.031 6.6E-07 53.4 12.7 40 237-276 18-60 (260)
460 PRK12727 flagellar biosynthesi 96.7 0.033 7.1E-07 58.8 13.7 29 238-266 346-374 (559)
461 PRK11174 cysteine/glutathione 96.6 0.016 3.5E-07 61.7 11.7 28 239-266 373-400 (588)
462 PRK08233 hypothetical protein; 96.6 0.0027 5.8E-08 56.5 4.9 32 243-274 4-36 (182)
463 PRK14721 flhF flagellar biosyn 96.6 0.013 2.9E-07 60.2 10.6 28 239-266 188-215 (420)
464 cd01878 HflX HflX subfamily. 96.6 0.023 5E-07 51.6 11.2 24 242-265 41-64 (204)
465 PLN02674 adenylate kinase 96.6 0.002 4.3E-08 61.6 4.2 38 241-280 30-67 (244)
466 PF04665 Pox_A32: Poxvirus A32 96.6 0.018 3.9E-07 54.9 10.7 120 240-375 11-156 (241)
467 PF05970 PIF1: PIF1-like helic 96.6 0.013 2.8E-07 59.1 10.3 42 240-281 20-64 (364)
468 PF08433 KTI12: Chromatin asso 96.6 0.0052 1.1E-07 59.6 7.1 71 244-315 3-84 (270)
469 PRK01184 hypothetical protein; 96.6 0.0019 4.1E-08 58.2 3.8 29 244-273 3-31 (184)
470 COG1136 SalX ABC-type antimicr 96.6 0.033 7.2E-07 52.7 12.3 28 239-266 28-55 (226)
471 PF13086 AAA_11: AAA domain; P 96.6 0.0027 5.8E-08 58.0 4.9 23 244-266 19-41 (236)
472 TIGR01448 recD_rel helicase, p 96.6 0.011 2.3E-07 64.9 10.3 71 243-313 339-428 (720)
473 TIGR02173 cyt_kin_arch cytidyl 96.6 0.002 4.4E-08 56.7 3.9 30 244-273 2-31 (171)
474 cd03284 ABC_MutS1 MutS1 homolo 96.6 0.014 3E-07 54.6 9.6 22 243-264 31-52 (216)
475 PRK10436 hypothetical protein; 96.6 0.0065 1.4E-07 63.2 8.1 93 206-311 195-297 (462)
476 PLN03186 DNA repair protein RA 96.6 0.0094 2E-07 59.7 9.0 42 236-277 117-167 (342)
477 cd03285 ABC_MSH2_euk MutS2 hom 96.6 0.03 6.5E-07 52.6 11.8 26 240-265 28-53 (222)
478 PF00488 MutS_V: MutS domain V 96.6 0.019 4.2E-07 54.4 10.5 24 243-266 44-67 (235)
479 cd03217 ABC_FeS_Assembly ABC-t 96.6 0.014 3E-07 53.5 9.4 27 239-265 23-49 (200)
480 PF08423 Rad51: Rad51; InterP 96.6 0.014 3E-07 56.1 9.5 118 236-354 32-185 (256)
481 cd02019 NK Nucleoside/nucleoti 96.6 0.0032 6.9E-08 48.0 4.1 22 245-266 2-23 (69)
482 PF13479 AAA_24: AAA domain 96.5 0.0058 1.3E-07 56.9 6.6 68 242-313 3-80 (213)
483 PF01583 APS_kinase: Adenylyls 96.5 0.0032 7E-08 56.2 4.7 39 242-280 2-43 (156)
484 PRK14526 adenylate kinase; Pro 96.5 0.0024 5.3E-08 59.6 4.1 28 244-271 2-29 (211)
485 PF13521 AAA_28: AAA domain; P 96.5 0.0022 4.9E-08 56.6 3.6 27 245-272 2-28 (163)
486 TIGR02768 TraA_Ti Ti-type conj 96.5 0.012 2.6E-07 64.9 10.0 72 242-313 368-451 (744)
487 TIGR01425 SRP54_euk signal rec 96.5 0.11 2.3E-06 53.7 16.3 74 240-313 98-194 (429)
488 PRK14723 flhF flagellar biosyn 96.5 0.019 4.1E-07 63.0 11.3 27 240-266 183-209 (767)
489 PRK10867 signal recognition pa 96.5 0.018 4E-07 59.4 10.5 74 240-313 98-195 (433)
490 cd03286 ABC_MSH6_euk MutS6 hom 96.5 0.018 3.9E-07 54.1 9.6 26 240-265 28-53 (218)
491 cd03239 ABC_SMC_head The struc 96.5 0.043 9.3E-07 49.7 11.8 23 244-266 24-46 (178)
492 PRK13657 cyclic beta-1,2-gluca 96.5 0.021 4.5E-07 60.9 11.3 28 239-266 358-385 (588)
493 PRK11176 lipid transporter ATP 96.5 0.023 5E-07 60.4 11.5 28 239-266 366-393 (582)
494 TIGR02538 type_IV_pilB type IV 96.5 0.0087 1.9E-07 63.8 8.3 72 241-312 315-396 (564)
495 PF08303 tRNA_lig_kinase: tRNA 96.5 0.037 8E-07 49.8 10.9 61 248-312 5-65 (168)
496 TIGR00150 HI0065_YjeE ATPase, 96.4 0.0035 7.5E-08 54.5 4.2 30 240-269 20-49 (133)
497 PF05272 VirE: Virulence-assoc 96.4 0.002 4.3E-08 59.7 2.8 26 240-265 50-75 (198)
498 TIGR02868 CydC thiol reductant 96.4 0.021 4.5E-07 60.0 10.8 28 239-266 358-385 (529)
499 TIGR03375 type_I_sec_LssB type 96.4 0.023 4.9E-07 61.9 11.3 28 239-266 488-515 (694)
500 TIGR02322 phosphon_PhnN phosph 96.4 0.003 6.4E-08 56.6 3.7 25 243-267 2-26 (179)
No 1
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.6e-38 Score=308.03 Aligned_cols=200 Identities=61% Similarity=1.003 Sum_probs=187.5
Q ss_pred CCCCCCcHHHH-HHhhhccchhhccCCCCccccccchHHHHHHHHHHHhccccCcccccccCCCCceEEEEcCCCCcHHH
Q 016911 179 LLPNFDSAETR-ALAESLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTM 257 (380)
Q Consensus 179 v~~~l~~~e~r-~~~~~~~~~~~~~~p~~~~~~l~Gl~~~k~~L~~~l~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~ 257 (380)
..+.+...+.+ .+...+++++..+.|++.|++|.|+.++|+.|++++..|+..|++|.++..|++++|++||||||||+
T Consensus 181 ~~~~f~~~~~d~~Lve~lerdIl~~np~ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~GirrPWkgvLm~GPPGTGKTl 260 (491)
T KOG0738|consen 181 EDKKFDSLGYDADLVEALERDILQRNPNIKWDDIAGLHEAKKLLKEAVVLPIWMPEFFKGIRRPWKGVLMVGPPGTGKTL 260 (491)
T ss_pred ccCCCCcccchHHHHHHHHHHHhccCCCcChHhhcchHHHHHHHHHHHhhhhhhHHHHhhcccccceeeeeCCCCCcHHH
Confidence 34556666665 77788899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCeEEEEecchhhhhhccchHHHHHHHHHHHHhcCCeEEEEcCcchhhhhccccchhhHHHHHHHHHHHHH
Q 016911 258 LAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQ 337 (380)
Q Consensus 258 la~ala~~l~~~~v~v~~s~l~~~~~ge~e~~l~~lf~~A~~~~p~ILfIDEiD~l~~~~~~~~~~~~~~~~i~~~Ll~~ 337 (380)
||+|+|.+++..||.|+.+.+.++|.|++++.++.+|+.|+.++|++|||||||.|..+++. ..+|+.++++.++||.+
T Consensus 261 LAKAvATEc~tTFFNVSsstltSKwRGeSEKlvRlLFemARfyAPStIFiDEIDslcs~RG~-s~EHEaSRRvKsELLvQ 339 (491)
T KOG0738|consen 261 LAKAVATECGTTFFNVSSSTLTSKWRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSQRGG-SSEHEASRRVKSELLVQ 339 (491)
T ss_pred HHHHHHHhhcCeEEEechhhhhhhhccchHHHHHHHHHHHHHhCCceeehhhHHHHHhcCCC-ccchhHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999998876 57899999999999999
Q ss_pred hcCCccCCCc---EEEEEEeCCCCCchHHHHhcccceeEecCCCC
Q 016911 338 MDGLTQSDEL---VFVLAATNLPWELDAAMLRRLEKRVSFSLIAL 379 (380)
Q Consensus 338 ldgl~~~~~~---VlVIatTN~~~~Ld~aLlrRF~~~I~~plPd~ 379 (380)
|||+...... |+|+|+||.||++|+||+|||.+.|++|||+.
T Consensus 340 mDG~~~t~e~~k~VmVLAATN~PWdiDEAlrRRlEKRIyIPLP~~ 384 (491)
T KOG0738|consen 340 MDGVQGTLENSKVVMVLAATNFPWDIDEALRRRLEKRIYIPLPDA 384 (491)
T ss_pred hhccccccccceeEEEEeccCCCcchHHHHHHHHhhheeeeCCCH
Confidence 9999765555 99999999999999999999999999999985
No 2
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.4e-36 Score=295.07 Aligned_cols=179 Identities=45% Similarity=0.729 Sum_probs=166.3
Q ss_pred hccCCCCccccccchHHHHHHHHHHHhccccCccccccc-CCCCceEEEEcCCCCcHHHHHHHHHHhcCCeEEEEecchh
Q 016911 200 IRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSV 278 (380)
Q Consensus 200 ~~~~p~~~~~~l~Gl~~~k~~L~~~l~~~l~~~~~~~~~-~~~~~~vLL~GppGtGKT~la~ala~~l~~~~v~v~~s~l 278 (380)
..+.|+.++++++|++++++++++.+..|+++|+.|..+ +.||+|||||||||||||.||+|+|++.+..|+.+.++++
T Consensus 142 v~e~PdvtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSEl 221 (406)
T COG1222 142 VEEKPDVTYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSEL 221 (406)
T ss_pred eccCCCCChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccHHH
Confidence 446799999999999999999999999999999999988 9999999999999999999999999999999999999999
Q ss_pred hhhhccchHHHHHHHHHHHHhcCCeEEEEcCcchhhhhcccc-chhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCCC
Q 016911 279 VSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEA-RSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLP 357 (380)
Q Consensus 279 ~~~~~ge~e~~l~~lf~~A~~~~p~ILfIDEiD~l~~~~~~~-~~~~~~~~~i~~~Ll~~ldgl~~~~~~VlVIatTN~~ 357 (380)
+.+|+|++.+.++.+|..|+..+|+||||||||+++..+... .+.+...++++-+||++|||+.. .++|-||+|||++
T Consensus 222 VqKYiGEGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~-~~nvKVI~ATNR~ 300 (406)
T COG1222 222 VQKYIGEGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDP-RGNVKVIMATNRP 300 (406)
T ss_pred HHHHhccchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCC-CCCeEEEEecCCc
Confidence 999999999999999999999999999999999999988543 23455567788899999999976 4569999999999
Q ss_pred CCchHHHHh--cccceeEecCCCC
Q 016911 358 WELDAAMLR--RLEKRVSFSLIAL 379 (380)
Q Consensus 358 ~~Ld~aLlr--RF~~~I~~plPd~ 379 (380)
+.|||||+| |||+.|+||+|+.
T Consensus 301 D~LDPALLRPGR~DRkIEfplPd~ 324 (406)
T COG1222 301 DILDPALLRPGRFDRKIEFPLPDE 324 (406)
T ss_pred cccChhhcCCCcccceeecCCCCH
Confidence 999999999 9999999999985
No 3
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.2e-35 Score=278.65 Aligned_cols=184 Identities=57% Similarity=0.983 Sum_probs=173.3
Q ss_pred hccchhhccCCCCccccccchHHHHHHHHHHHhccccCcccccccCCCCceEEEEcCCCCcHHHHHHHHHHhcCCeEEEE
Q 016911 194 SLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNI 273 (380)
Q Consensus 194 ~~~~~~~~~~p~~~~~~l~Gl~~~k~~L~~~l~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~l~~~~v~v 273 (380)
.+...+..+.|++.|+++.|++.+++.|++++..|++.|++|.+.-.|++++||+||||||||.||+|+|.+.+..|+.+
T Consensus 118 ~L~sAIv~EKPNVkWsDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAnSTFFSv 197 (439)
T KOG0739|consen 118 ALNSAIVREKPNVKWSDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEANSTFFSV 197 (439)
T ss_pred HhhhhhhccCCCCchhhhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhcCCceEEe
Confidence 33445666789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecchhhhhhccchHHHHHHHHHHHHhcCCeEEEEcCcchhhhhccccchhhHHHHHHHHHHHHHhcCCccCCCcEEEEEE
Q 016911 274 SASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAA 353 (380)
Q Consensus 274 ~~s~l~~~~~ge~e~~l~~lf~~A~~~~p~ILfIDEiD~l~~~~~~~~~~~~~~~~i~~~Ll~~ldgl~~~~~~VlVIat 353 (380)
+.++++++|.|++++.++.+|+.|+.+.|+||||||||.+++.++.+ +.+..+++..+|+.+|.|+...+..|+|+++
T Consensus 198 SSSDLvSKWmGESEkLVknLFemARe~kPSIIFiDEiDslcg~r~en--EseasRRIKTEfLVQMqGVG~d~~gvLVLgA 275 (439)
T KOG0739|consen 198 SSSDLVSKWMGESEKLVKNLFEMARENKPSIIFIDEIDSLCGSRSEN--ESEASRRIKTEFLVQMQGVGNDNDGVLVLGA 275 (439)
T ss_pred ehHHHHHHHhccHHHHHHHHHHHHHhcCCcEEEeehhhhhccCCCCC--chHHHHHHHHHHHHhhhccccCCCceEEEec
Confidence 99999999999999999999999999999999999999999888754 4566899999999999999888889999999
Q ss_pred eCCCCCchHHHHhcccceeEecCCCC
Q 016911 354 TNLPWELDAAMLRRLEKRVSFSLIAL 379 (380)
Q Consensus 354 TN~~~~Ld~aLlrRF~~~I~~plPd~ 379 (380)
||-||.||.+++|||++.|++|+|+.
T Consensus 276 TNiPw~LDsAIRRRFekRIYIPLPe~ 301 (439)
T KOG0739|consen 276 TNIPWVLDSAIRRRFEKRIYIPLPEA 301 (439)
T ss_pred CCCchhHHHHHHHHhhcceeccCCcH
Confidence 99999999999999999999999975
No 4
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.5e-34 Score=298.01 Aligned_cols=184 Identities=44% Similarity=0.730 Sum_probs=171.8
Q ss_pred hhccchhhccCCCCccccccchHHHHHHHHHHHhccccCccccccc-CCCCceEEEEcCCCCcHHHHHHHHHHhcCCeEE
Q 016911 193 ESLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFF 271 (380)
Q Consensus 193 ~~~~~~~~~~~p~~~~~~l~Gl~~~k~~L~~~l~~~l~~~~~~~~~-~~~~~~vLL~GppGtGKT~la~ala~~l~~~~v 271 (380)
.+..++...+.|+..|++|.|++++|++|++.+.+++++++.|.+. +.|+++||||||||||||++|+++|++.+.+|+
T Consensus 418 psa~Re~~ve~p~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~nFl 497 (693)
T KOG0730|consen 418 PSALREILVEMPNVSWDDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMNFL 497 (693)
T ss_pred chhhhheeccCCCCChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCCee
Confidence 3445667778899999999999999999999999999999999998 699999999999999999999999999999999
Q ss_pred EEecchhhhhhccchHHHHHHHHHHHHhcCCeEEEEcCcchhhhhccccchhhHHHHHHHHHHHHHhcCCccCCCcEEEE
Q 016911 272 NISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVL 351 (380)
Q Consensus 272 ~v~~s~l~~~~~ge~e~~l~~lf~~A~~~~p~ILfIDEiD~l~~~~~~~~~~~~~~~~i~~~Ll~~ldgl~~~~~~VlVI 351 (380)
.+.+.+++++|+|++|+.++.+|+.|++.+|+|||+||||.+...|++. .+.+..+++++||.+|||+... ++|+||
T Consensus 498 svkgpEL~sk~vGeSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~--~~~v~~RVlsqLLtEmDG~e~~-k~V~Vi 574 (693)
T KOG0730|consen 498 SVKGPELFSKYVGESERAIREVFRKARQVAPCIIFFDEIDALAGSRGGS--SSGVTDRVLSQLLTEMDGLEAL-KNVLVI 574 (693)
T ss_pred eccCHHHHHHhcCchHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCC--ccchHHHHHHHHHHHccccccc-CcEEEE
Confidence 9999999999999999999999999999999999999999999998733 3378899999999999999755 459999
Q ss_pred EEeCCCCCchHHHHh--cccceeEecCCCC
Q 016911 352 AATNLPWELDAAMLR--RLEKRVSFSLIAL 379 (380)
Q Consensus 352 atTN~~~~Ld~aLlr--RF~~~I~~plPd~ 379 (380)
|+||+|+.+|+|++| |||+.|++|+||.
T Consensus 575 AATNRpd~ID~ALlRPGRlD~iiyVplPD~ 604 (693)
T KOG0730|consen 575 AATNRPDMIDPALLRPGRLDRIIYVPLPDL 604 (693)
T ss_pred eccCChhhcCHHHcCCcccceeEeecCccH
Confidence 999999999999999 9999999999985
No 5
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.9e-34 Score=297.73 Aligned_cols=178 Identities=40% Similarity=0.701 Sum_probs=170.9
Q ss_pred cCCCCccccccchHHHHHHHHHHHhccccCcccccccCCCCceEEEEcCCCCcHHHHHHHHHHhcCCeEEEEecchhhhh
Q 016911 202 GSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSK 281 (380)
Q Consensus 202 ~~p~~~~~~l~Gl~~~k~~L~~~l~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~l~~~~v~v~~s~l~~~ 281 (380)
..|++.|+|++|++++|..+.+.+..|++++++|+...++..|+|||||||||||.+|||+|.++...|+.+.+.++.+.
T Consensus 665 KIPnV~WdDVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEcsL~FlSVKGPELLNM 744 (953)
T KOG0736|consen 665 KIPNVSWDDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATECSLNFLSVKGPELLNM 744 (953)
T ss_pred CCCccchhcccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhceeeEEeecCHHHHHH
Confidence 35888899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccchHHHHHHHHHHHHhcCCeEEEEcCcchhhhhccccchhhHHHHHHHHHHHHHhcCCcc-CCCcEEEEEEeCCCCCc
Q 016911 282 WRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQ-SDELVFVLAATNLPWEL 360 (380)
Q Consensus 282 ~~ge~e~~l~~lf~~A~~~~p~ILfIDEiD~l~~~~~~~~~~~~~~~~i~~~Ll~~ldgl~~-~~~~VlVIatTN~~~~L 360 (380)
|+|++|+++|.+|+.|+..+|||||+||+|++++.|+..++...+..+++++|+.+|||+.. ....|+||+|||+|+.|
T Consensus 745 YVGqSE~NVR~VFerAR~A~PCVIFFDELDSlAP~RG~sGDSGGVMDRVVSQLLAELDgls~~~s~~VFViGATNRPDLL 824 (953)
T KOG0736|consen 745 YVGQSEENVREVFERARSAAPCVIFFDELDSLAPNRGRSGDSGGVMDRVVSQLLAELDGLSDSSSQDVFVIGATNRPDLL 824 (953)
T ss_pred HhcchHHHHHHHHHHhhccCCeEEEeccccccCccCCCCCCccccHHHHHHHHHHHhhcccCCCCCceEEEecCCCcccc
Confidence 99999999999999999999999999999999999998888889999999999999999976 66789999999999999
Q ss_pred hHHHHh--cccceeEecCCCC
Q 016911 361 DAAMLR--RLEKRVSFSLIAL 379 (380)
Q Consensus 361 d~aLlr--RF~~~I~~plPd~ 379 (380)
||+|+| |||+.+++.+++.
T Consensus 825 DpALLRPGRFDKLvyvG~~~d 845 (953)
T KOG0736|consen 825 DPALLRPGRFDKLVYVGPNED 845 (953)
T ss_pred ChhhcCCCccceeEEecCCcc
Confidence 999999 9999999998864
No 6
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.9e-34 Score=290.50 Aligned_cols=188 Identities=39% Similarity=0.667 Sum_probs=174.9
Q ss_pred HHHhhhccchhhccCCCCccccccchHHHHHHHHHHHhccccCccccccc-CCCCceEEEEcCCCCcHHHHHHHHHHhcC
Q 016911 189 RALAESLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECK 267 (380)
Q Consensus 189 r~~~~~~~~~~~~~~p~~~~~~l~Gl~~~k~~L~~~l~~~l~~~~~~~~~-~~~~~~vLL~GppGtGKT~la~ala~~l~ 267 (380)
..+..+..++.....|+++|++|+++++++.+|..++.+|+++++.|..+ +..+.|+|||||||||||.||+|+|++.+
T Consensus 491 ~~iQPSakREGF~tVPdVtW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~PsGvLL~GPPGCGKTLlAKAVANEag 570 (802)
T KOG0733|consen 491 SKIQPSAKREGFATVPDVTWDDIGALEEVRLELNMAILAPIKRPDLFKALGIDAPSGVLLCGPPGCGKTLLAKAVANEAG 570 (802)
T ss_pred HhcCcchhcccceecCCCChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCCCCCCceEEeCCCCccHHHHHHHHhhhcc
Confidence 34456667888888999999999999999999999999999999999987 78899999999999999999999999999
Q ss_pred CeEEEEecchhhhhhccchHHHHHHHHHHHHhcCCeEEEEcCcchhhhhccccchhhHHHHHHHHHHHHHhcCCccCCCc
Q 016911 268 TTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDEL 347 (380)
Q Consensus 268 ~~~v~v~~s~l~~~~~ge~e~~l~~lf~~A~~~~p~ILfIDEiD~l~~~~~~~~~~~~~~~~i~~~Ll~~ldgl~~~~~~ 347 (380)
.+|+.+.+.+++++|+|+++..++.+|..|+.+.|||||+||+|.|.+.++... .....+++++||.+|||+..+.+
T Consensus 571 ~NFisVKGPELlNkYVGESErAVR~vFqRAR~saPCVIFFDEiDaL~p~R~~~~--s~~s~RvvNqLLtElDGl~~R~g- 647 (802)
T KOG0733|consen 571 ANFISVKGPELLNKYVGESERAVRQVFQRARASAPCVIFFDEIDALVPRRSDEG--SSVSSRVVNQLLTELDGLEERRG- 647 (802)
T ss_pred CceEeecCHHHHHHHhhhHHHHHHHHHHHhhcCCCeEEEecchhhcCcccCCCC--chhHHHHHHHHHHHhcccccccc-
Confidence 999999999999999999999999999999999999999999999999987543 55678999999999999976554
Q ss_pred EEEEEEeCCCCCchHHHHh--cccceeEecCCCC
Q 016911 348 VFVLAATNLPWELDAAMLR--RLEKRVSFSLIAL 379 (380)
Q Consensus 348 VlVIatTN~~~~Ld~aLlr--RF~~~I~~plPd~ 379 (380)
|+||++||+|+.+|||++| ||++.+++++|+.
T Consensus 648 V~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~ 681 (802)
T KOG0733|consen 648 VYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNA 681 (802)
T ss_pred eEEEeecCCCcccchhhcCCCccCceeeecCCCH
Confidence 9999999999999999999 9999999999975
No 7
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.97 E-value=4.2e-32 Score=254.25 Aligned_cols=227 Identities=29% Similarity=0.436 Sum_probs=183.4
Q ss_pred cccchhhHHHHHhhhhccchhhhhHHHHHHHHHhcCCCCCCCCcHHHH--------------HHhhhccchhhccCCCCc
Q 016911 142 TSDMAVYEQYRTQFQGSGSTCLNGVLANVINERLQKPLLPNFDSAETR--------------ALAESLCRDIIRGSPDVK 207 (380)
Q Consensus 142 ~~~L~~~~~~~~~~~~~~~~~~~~~~~~~l~er~~~~v~~~l~~~e~r--------------~~~~~~~~~~~~~~p~~~ 207 (380)
+.+..+|+.|+++||.......+.++. |.++.+++..--++ +....-...-....++.+
T Consensus 47 ~dn~~~F~~YArdQW~Ge~v~eg~ylF-------D~~~~pdyAfkvI~~~P~~~~i~~st~i~vl~~~~~~~~e~~~~it 119 (368)
T COG1223 47 DDNPEVFNIYARDQWLGEVVREGDYLF-------DTRMFPDYAFKVIRVVPSGGGIITSTTIFVLETPREEDREIISDIT 119 (368)
T ss_pred cCCHHHHHHHHHHhhcceeeecCceEe-------ecccccccceeEEEEeCCCCceecceEEEEecCcchhhhhhhcccc
Confidence 348999999999999999887776653 44555554431110 000000111112347788
Q ss_pred cccccchHHHHHHHHHHHhccccCcccccccCCCCceEEEEcCCCCcHHHHHHHHHHhcCCeEEEEecchhhhhhccchH
Q 016911 208 WESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSE 287 (380)
Q Consensus 208 ~~~l~Gl~~~k~~L~~~l~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~l~~~~v~v~~s~l~~~~~ge~e 287 (380)
+++++|++++|+..+- +...+..|+.|..|. ++++|||||||||||++|+++|++.+.|++.++..++.+.++|+..
T Consensus 120 ~ddViGqEeAK~kcrl-i~~yLenPe~Fg~WA--PknVLFyGppGTGKTm~Akalane~kvp~l~vkat~liGehVGdga 196 (368)
T COG1223 120 LDDVIGQEEAKRKCRL-IMEYLENPERFGDWA--PKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELIGEHVGDGA 196 (368)
T ss_pred HhhhhchHHHHHHHHH-HHHHhhChHHhcccC--cceeEEECCCCccHHHHHHHHhcccCCceEEechHHHHHHHhhhHH
Confidence 9999999999988774 456678888888764 4899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCeEEEEcCcchhhhhccccchhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCCCCCchHHHHhc
Q 016911 288 KLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRR 367 (380)
Q Consensus 288 ~~l~~lf~~A~~~~p~ILfIDEiD~l~~~~~~~~~~~~~~~~i~~~Ll~~ldgl~~~~~~VlVIatTN~~~~Ld~aLlrR 367 (380)
..++.+++.|+..+|||+||||+|.++-++.......+ ...+++.||.+|||+..+ ..|+.||+||+|+.||+++++|
T Consensus 197 r~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGD-VsEiVNALLTelDgi~en-eGVvtIaaTN~p~~LD~aiRsR 274 (368)
T COG1223 197 RRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGD-VSEIVNALLTELDGIKEN-EGVVTIAATNRPELLDPAIRSR 274 (368)
T ss_pred HHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhccc-HHHHHHHHHHhccCcccC-CceEEEeecCChhhcCHHHHhh
Confidence 99999999999999999999999999988765333333 345889999999999854 4588999999999999999999
Q ss_pred ccceeEecCCCCC
Q 016911 368 LEKRVSFSLIALT 380 (380)
Q Consensus 368 F~~~I~~plPd~~ 380 (380)
|...|+|.+|+.+
T Consensus 275 FEeEIEF~LP~~e 287 (368)
T COG1223 275 FEEEIEFKLPNDE 287 (368)
T ss_pred hhheeeeeCCChH
Confidence 9999999999853
No 8
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.9e-31 Score=272.27 Aligned_cols=173 Identities=41% Similarity=0.671 Sum_probs=160.7
Q ss_pred CCCccccccchHHHHHHHHHHHhccccCccccccc-CCCCceEEEEcCCCCcHHHHHHHHHHhcCCeEEEEecchhhhhh
Q 016911 204 PDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKW 282 (380)
Q Consensus 204 p~~~~~~l~Gl~~~k~~L~~~l~~~l~~~~~~~~~-~~~~~~vLL~GppGtGKT~la~ala~~l~~~~v~v~~s~l~~~~ 282 (380)
++..|.+++|++....+|.+.+.. +++|+.|... +.|++|+|||||||||||+||+|+|++++.||+.+++.++++.+
T Consensus 185 snv~f~diGG~d~~~~el~~li~~-i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~isApeivSGv 263 (802)
T KOG0733|consen 185 SNVSFSDIGGLDKTLAELCELIIH-IKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVPFLSISAPEIVSGV 263 (802)
T ss_pred CCcchhhccChHHHHHHHHHHHHH-hcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCceEeecchhhhccc
Confidence 466799999999999999998777 8888888776 89999999999999999999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHHHhcCCeEEEEcCcchhhhhccccchhhHHHHHHHHHHHHHhcCCccC---CCcEEEEEEeCCCCC
Q 016911 283 RGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQS---DELVFVLAATNLPWE 359 (380)
Q Consensus 283 ~ge~e~~l~~lf~~A~~~~p~ILfIDEiD~l~~~~~~~~~~~~~~~~i~~~Ll~~ldgl~~~---~~~VlVIatTN~~~~ 359 (380)
.|++++.++.+|+.|+.++|||+||||||.+.+.+.. .+.+..++++.+|+..||++... ...|+||+|||+|+.
T Consensus 264 SGESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~--aqreMErRiVaQLlt~mD~l~~~~~~g~~VlVIgATnRPDs 341 (802)
T KOG0733|consen 264 SGESEKKIRELFDQAKSNAPCIVFIDEIDAITPKREE--AQREMERRIVAQLLTSMDELSNEKTKGDPVLVIGATNRPDS 341 (802)
T ss_pred CcccHHHHHHHHHHHhccCCeEEEeecccccccchhh--HHHHHHHHHHHHHHHhhhcccccccCCCCeEEEecCCCCcc
Confidence 9999999999999999999999999999999999875 45566799999999999998654 467999999999999
Q ss_pred chHHHHh--cccceeEecCCCC
Q 016911 360 LDAAMLR--RLEKRVSFSLIAL 379 (380)
Q Consensus 360 Ld~aLlr--RF~~~I~~plPd~ 379 (380)
||++|+| ||++.|.+.+|+.
T Consensus 342 lDpaLRRaGRFdrEI~l~vP~e 363 (802)
T KOG0733|consen 342 LDPALRRAGRFDREICLGVPSE 363 (802)
T ss_pred cCHHHhccccccceeeecCCch
Confidence 9999999 9999999999984
No 9
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=3.8e-31 Score=266.66 Aligned_cols=173 Identities=40% Similarity=0.627 Sum_probs=158.0
Q ss_pred CCCccccccchHHHHHHHHHHHhccccCccccccc-CCCCceEEEEcCCCCcHHHHHHHHHHhcCCeEEEEecchhhhhh
Q 016911 204 PDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKW 282 (380)
Q Consensus 204 p~~~~~~l~Gl~~~k~~L~~~l~~~l~~~~~~~~~-~~~~~~vLL~GppGtGKT~la~ala~~l~~~~v~v~~s~l~~~~ 282 (380)
.+.+|+++.|.+++|++|.+.+ .+++.|..|.++ .+-+++|||+||||||||.||||+|.+.+.||+...++++...+
T Consensus 299 ~nv~F~dVkG~DEAK~ELeEiV-efLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~sGSEFdEm~ 377 (752)
T KOG0734|consen 299 KNVTFEDVKGVDEAKQELEEIV-EFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYASGSEFDEMF 377 (752)
T ss_pred cccccccccChHHHHHHHHHHH-HHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCCeEeccccchhhhh
Confidence 3667999999999999999975 457777777776 78899999999999999999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHHHhcCCeEEEEcCcchhhhhccccchhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCCCCCchH
Q 016911 283 RGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDA 362 (380)
Q Consensus 283 ~ge~e~~l~~lf~~A~~~~p~ILfIDEiD~l~~~~~~~~~~~~~~~~i~~~Ll~~ldgl~~~~~~VlVIatTN~~~~Ld~ 362 (380)
+|...++++++|..|+..+||||||||||.++++|..... + ..++.+++||.+|||+..+. .|+||++||.|+.||+
T Consensus 378 VGvGArRVRdLF~aAk~~APcIIFIDEiDavG~kR~~~~~-~-y~kqTlNQLLvEmDGF~qNe-GiIvigATNfpe~LD~ 454 (752)
T KOG0734|consen 378 VGVGARRVRDLFAAAKARAPCIIFIDEIDAVGGKRNPSDQ-H-YAKQTLNQLLVEMDGFKQNE-GIIVIGATNFPEALDK 454 (752)
T ss_pred hcccHHHHHHHHHHHHhcCCeEEEEechhhhcccCCccHH-H-HHHHHHHHHHHHhcCcCcCC-ceEEEeccCChhhhhH
Confidence 9999999999999999999999999999999998865322 2 78999999999999998666 4889999999999999
Q ss_pred HHHh--cccceeEecCCCCC
Q 016911 363 AMLR--RLEKRVSFSLIALT 380 (380)
Q Consensus 363 aLlr--RF~~~I~~plPd~~ 380 (380)
+|.| |||+.+.+|.||.+
T Consensus 455 AL~RPGRFD~~v~Vp~PDv~ 474 (752)
T KOG0734|consen 455 ALTRPGRFDRHVTVPLPDVR 474 (752)
T ss_pred HhcCCCccceeEecCCCCcc
Confidence 9999 99999999999963
No 10
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=6.7e-30 Score=238.78 Aligned_cols=179 Identities=41% Similarity=0.694 Sum_probs=163.5
Q ss_pred hccCCCCccccccchHHHHHHHHHHHhccccCccccccc-CCCCceEEEEcCCCCcHHHHHHHHHHhcCCeEEEEecchh
Q 016911 200 IRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSV 278 (380)
Q Consensus 200 ~~~~p~~~~~~l~Gl~~~k~~L~~~l~~~l~~~~~~~~~-~~~~~~vLL~GppGtGKT~la~ala~~l~~~~v~v~~s~l 278 (380)
..+.|..++.++.|++-.|+++++.+..|+.+.+.+..+ +.|++++|+|||||||||+|++++|+.....|+.+.++++
T Consensus 146 ~~ekpdvsy~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~firvvgsef 225 (408)
T KOG0727|consen 146 PDEKPDVSYADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEF 225 (408)
T ss_pred CCCCCCccccccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHHH
Confidence 345688999999999999999999999999999999887 9999999999999999999999999999999999999999
Q ss_pred hhhhccchHHHHHHHHHHHHhcCCeEEEEcCcchhhhhccccc-hhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCCC
Q 016911 279 VSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEAR-SEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLP 357 (380)
Q Consensus 279 ~~~~~ge~e~~l~~lf~~A~~~~p~ILfIDEiD~l~~~~~~~~-~~~~~~~~i~~~Ll~~ldgl~~~~~~VlVIatTN~~ 357 (380)
+.+|.|+....++.+|+.|+.++|+||||||+|.+.-.+-+.+ +.+...++++-+|+++|||+.... +|-||.+||+.
T Consensus 226 vqkylgegprmvrdvfrlakenapsiifideidaiatkrfdaqtgadrevqril~ellnqmdgfdq~~-nvkvimatnra 304 (408)
T KOG0727|consen 226 VQKYLGEGPRMVRDVFRLAKENAPSIIFIDEIDAIATKRFDAQTGADREVQRILIELLNQMDGFDQTT-NVKVIMATNRA 304 (408)
T ss_pred HHHHhccCcHHHHHHHHHHhccCCcEEEeehhhhHhhhhccccccccHHHHHHHHHHHHhccCcCccc-ceEEEEecCcc
Confidence 9999999999999999999999999999999999988774332 234456788889999999997544 58899999999
Q ss_pred CCchHHHHh--cccceeEecCCCC
Q 016911 358 WELDAAMLR--RLEKRVSFSLIAL 379 (380)
Q Consensus 358 ~~Ld~aLlr--RF~~~I~~plPd~ 379 (380)
+.+||+++| |.++.|+||+||-
T Consensus 305 dtldpallrpgrldrkiefplpdr 328 (408)
T KOG0727|consen 305 DTLDPALLRPGRLDRKIEFPLPDR 328 (408)
T ss_pred cccCHhhcCCccccccccCCCCch
Confidence 999999999 9999999999983
No 11
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=7.4e-29 Score=235.54 Aligned_cols=179 Identities=40% Similarity=0.678 Sum_probs=163.1
Q ss_pred hccCCCCccccccchHHHHHHHHHHHhccccCccccccc-CCCCceEEEEcCCCCcHHHHHHHHHHhcCCeEEEEecchh
Q 016911 200 IRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSV 278 (380)
Q Consensus 200 ~~~~p~~~~~~l~Gl~~~k~~L~~~l~~~l~~~~~~~~~-~~~~~~vLL~GppGtGKT~la~ala~~l~~~~v~v~~s~l 278 (380)
....|..++.++.|+++.++++++.+..|+.+|+++... ++|+++|+|||+||||||.||+|+|+.....|+.+-.+++
T Consensus 176 ~eKaP~Ety~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTSATFlRvvGseL 255 (440)
T KOG0726|consen 176 VEKAPQETYADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTSATFLRVVGSEL 255 (440)
T ss_pred cccCchhhhcccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccchhhhhhhhHHH
Confidence 335688899999999999999999999999999999987 9999999999999999999999999999999999999999
Q ss_pred hhhhccchHHHHHHHHHHHHhcCCeEEEEcCcchhhhhccccch-hhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCCC
Q 016911 279 VSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARS-EHEASRRLKTELLIQMDGLTQSDELVFVLAATNLP 357 (380)
Q Consensus 279 ~~~~~ge~e~~l~~lf~~A~~~~p~ILfIDEiD~l~~~~~~~~~-~~~~~~~i~~~Ll~~ldgl~~~~~~VlVIatTN~~ 357 (380)
..+|.|+..+.++.+|+.|..++|+|+||||||++...+.+..+ .....++..-+|++++||+.. .+.|-||.+||+.
T Consensus 256 iQkylGdGpklvRqlF~vA~e~apSIvFiDEIdAiGtKRyds~SggerEiQrtmLELLNQldGFds-rgDvKvimATnri 334 (440)
T KOG0726|consen 256 IQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDS-RGDVKVIMATNRI 334 (440)
T ss_pred HHHHhccchHHHHHHHHHHHhcCCceEEeehhhhhccccccCCCccHHHHHHHHHHHHHhccCccc-cCCeEEEEecccc
Confidence 99999999999999999999999999999999999988864432 233455666689999999976 4558899999999
Q ss_pred CCchHHHHh--cccceeEecCCCC
Q 016911 358 WELDAAMLR--RLEKRVSFSLIAL 379 (380)
Q Consensus 358 ~~Ld~aLlr--RF~~~I~~plPd~ 379 (380)
+.|||+|.| |+++.|+||+||.
T Consensus 335 e~LDPaLiRPGrIDrKIef~~pDe 358 (440)
T KOG0726|consen 335 ETLDPALIRPGRIDRKIEFPLPDE 358 (440)
T ss_pred cccCHhhcCCCccccccccCCCch
Confidence 999999999 9999999999985
No 12
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=2.5e-28 Score=238.54 Aligned_cols=179 Identities=45% Similarity=0.774 Sum_probs=166.0
Q ss_pred hhccCCCCccccccchHHHHHHHHHHHhccccCccccccc--CCCCceEEEEcCCCCcHHHHHHHHHHhcCCeEEEEecc
Q 016911 199 IIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL--LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISAS 276 (380)
Q Consensus 199 ~~~~~p~~~~~~l~Gl~~~k~~L~~~l~~~l~~~~~~~~~--~~~~~~vLL~GppGtGKT~la~ala~~l~~~~v~v~~s 276 (380)
+....-.+.|++|.|++.+++++++.+..|+..++.|..+ ..|++|+||+||||||||.+|+++|.+.+.+|+.+..+
T Consensus 82 v~p~~I~v~f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv~~s 161 (386)
T KOG0737|consen 82 VPPSEIGVSFDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGANFINVSVS 161 (386)
T ss_pred cchhhceeehhhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcCCCcceeecc
Confidence 3444456789999999999999999999999999999654 88999999999999999999999999999999999999
Q ss_pred hhhhhhccchHHHHHHHHHHHHhcCCeEEEEcCcchhhhhccccchhhHHHHHHHHHHHHHhcCCccCCC-cEEEEEEeC
Q 016911 277 SVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDE-LVFVLAATN 355 (380)
Q Consensus 277 ~l~~~~~ge~e~~l~~lf~~A~~~~p~ILfIDEiD~l~~~~~~~~~~~~~~~~i~~~Ll~~ldgl~~~~~-~VlVIatTN 355 (380)
.+.++|.|+.++.++.+|..|....|+||||||+|.+...|+ ..+|+..+.+.++|...-||+..+.. .|+|++|||
T Consensus 162 ~lt~KWfgE~eKlv~AvFslAsKl~P~iIFIDEvds~L~~R~--s~dHEa~a~mK~eFM~~WDGl~s~~~~rVlVlgATN 239 (386)
T KOG0737|consen 162 NLTSKWFGEAQKLVKAVFSLASKLQPSIIFIDEVDSFLGQRR--STDHEATAMMKNEFMALWDGLSSKDSERVLVLGATN 239 (386)
T ss_pred ccchhhHHHHHHHHHHHHhhhhhcCcceeehhhHHHHHhhcc--cchHHHHHHHHHHHHHHhccccCCCCceEEEEeCCC
Confidence 999999999999999999999999999999999999999883 67899999999999999999965554 799999999
Q ss_pred CCCCchHHHHhcccceeEecCCCC
Q 016911 356 LPWELDAAMLRRLEKRVSFSLIAL 379 (380)
Q Consensus 356 ~~~~Ld~aLlrRF~~~I~~plPd~ 379 (380)
+|.++|++++||+.+.+++++|+.
T Consensus 240 RP~DlDeAiiRR~p~rf~V~lP~~ 263 (386)
T KOG0737|consen 240 RPFDLDEAIIRRLPRRFHVGLPDA 263 (386)
T ss_pred CCccHHHHHHHhCcceeeeCCCch
Confidence 999999999999999999999985
No 13
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=4.3e-28 Score=228.13 Aligned_cols=188 Identities=38% Similarity=0.622 Sum_probs=165.8
Q ss_pred hhhccchhhccCCCCccccccchHHHHHHHHHHHhccccCccccccc-CCCCceEEEEcCCCCcHHHHHHHHHHhcCCeE
Q 016911 192 AESLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTF 270 (380)
Q Consensus 192 ~~~~~~~~~~~~p~~~~~~l~Gl~~~k~~L~~~l~~~l~~~~~~~~~-~~~~~~vLL~GppGtGKT~la~ala~~l~~~~ 270 (380)
..++.--...+.|+.+++++.|..+.++.+++.+..|+.+|+.|-.+ +.|++++|+|||||||||.+|+|+|+..+.-|
T Consensus 160 dpsvtmm~veekpdvty~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrtdacf 239 (435)
T KOG0729|consen 160 DPSVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRTDACF 239 (435)
T ss_pred CCceeEEEeecCCCcccccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcccCceE
Confidence 33444444557799999999999999999999999999999887766 99999999999999999999999999999999
Q ss_pred EEEecchhhhhhccchHHHHHHHHHHHHhcCCeEEEEcCcchhhhhccc-cchhhHHHHHHHHHHHHHhcCCccCCCcEE
Q 016911 271 FNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGE-ARSEHEASRRLKTELLIQMDGLTQSDELVF 349 (380)
Q Consensus 271 v~v~~s~l~~~~~ge~e~~l~~lf~~A~~~~p~ILfIDEiD~l~~~~~~-~~~~~~~~~~i~~~Ll~~ldgl~~~~~~Vl 349 (380)
+.+-.++++.+|+|+....++.+|+.|+..+.||||+||+|.+.+.+-. +...+...++..-+|++++||+.. .+++-
T Consensus 240 irvigselvqkyvgegarmvrelf~martkkaciiffdeidaiggarfddg~ggdnevqrtmleli~qldgfdp-rgnik 318 (435)
T KOG0729|consen 240 IRVIGSELVQKYVGEGARMVRELFEMARTKKACIIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDP-RGNIK 318 (435)
T ss_pred EeehhHHHHHHHhhhhHHHHHHHHHHhcccceEEEEeeccccccCccccCCCCCcHHHHHHHHHHHHhccCCCC-CCCeE
Confidence 9999999999999999999999999999999999999999999887632 222333455667789999999965 45688
Q ss_pred EEEEeCCCCCchHHHHh--cccceeEecCCCCC
Q 016911 350 VLAATNLPWELDAAMLR--RLEKRVSFSLIALT 380 (380)
Q Consensus 350 VIatTN~~~~Ld~aLlr--RF~~~I~~plPd~~ 380 (380)
|+.+||+|+.|||+|+| |+++.++|.+||++
T Consensus 319 vlmatnrpdtldpallrpgrldrkvef~lpdle 351 (435)
T KOG0729|consen 319 VLMATNRPDTLDPALLRPGRLDRKVEFGLPDLE 351 (435)
T ss_pred EEeecCCCCCcCHhhcCCcccccceeccCCccc
Confidence 99999999999999999 99999999999975
No 14
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=3.1e-28 Score=228.50 Aligned_cols=179 Identities=38% Similarity=0.656 Sum_probs=162.8
Q ss_pred hccCCCCccccccchHHHHHHHHHHHhccccCccccccc-CCCCceEEEEcCCCCcHHHHHHHHHHhcCCeEEEEecchh
Q 016911 200 IRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSV 278 (380)
Q Consensus 200 ~~~~p~~~~~~l~Gl~~~k~~L~~~l~~~l~~~~~~~~~-~~~~~~vLL~GppGtGKT~la~ala~~l~~~~v~v~~s~l 278 (380)
....|+..+++|.|++..+++|.+++..++.+++.|... ++|++++|+|||||||||.+|++.|.+.+..|..+.+..+
T Consensus 162 vDekPtE~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~aTFLKLAgPQL 241 (424)
T KOG0652|consen 162 VDEKPTEQYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTNATFLKLAGPQL 241 (424)
T ss_pred eccCCcccccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhccchHHHhcchHH
Confidence 346688899999999999999999999999999999887 9999999999999999999999999999999999999999
Q ss_pred hhhhccchHHHHHHHHHHHHhcCCeEEEEcCcchhhhhcccc-chhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCCC
Q 016911 279 VSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEA-RSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLP 357 (380)
Q Consensus 279 ~~~~~ge~e~~l~~lf~~A~~~~p~ILfIDEiD~l~~~~~~~-~~~~~~~~~i~~~Ll~~ldgl~~~~~~VlVIatTN~~ 357 (380)
+..|+|+..+.++..|..|+..+|+||||||+|.++..+... ...+...++..-+|++++||++.... |-||++||+.
T Consensus 242 VQMfIGdGAkLVRDAFaLAKEkaP~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQLDGFss~~~-vKviAATNRv 320 (424)
T KOG0652|consen 242 VQMFIGDGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSDDR-VKVIAATNRV 320 (424)
T ss_pred HhhhhcchHHHHHHHHHHhhccCCeEEEEechhhhccccccccccccHHHHHHHHHHHHhhcCCCCccc-eEEEeecccc
Confidence 999999999999999999999999999999999998877433 23344566777889999999986554 8899999999
Q ss_pred CCchHHHHh--cccceeEecCCCC
Q 016911 358 WELDAAMLR--RLEKRVSFSLIAL 379 (380)
Q Consensus 358 ~~Ld~aLlr--RF~~~I~~plPd~ 379 (380)
+-|||+|+| |.++.|+||.|.-
T Consensus 321 DiLDPALlRSGRLDRKIEfP~Pne 344 (424)
T KOG0652|consen 321 DILDPALLRSGRLDRKIEFPHPNE 344 (424)
T ss_pred cccCHHHhhcccccccccCCCCCh
Confidence 999999999 9999999999973
No 15
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=4.4e-28 Score=250.85 Aligned_cols=174 Identities=40% Similarity=0.685 Sum_probs=162.3
Q ss_pred CCCccccccchHHHHHHHHHHHhccccCccccccc-CCCCceEEEEcCCCCcHHHHHHHHHHhcCCeEEEEecchhhhhh
Q 016911 204 PDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKW 282 (380)
Q Consensus 204 p~~~~~~l~Gl~~~k~~L~~~l~~~l~~~~~~~~~-~~~~~~vLL~GppGtGKT~la~ala~~l~~~~v~v~~s~l~~~~ 282 (380)
..+.|+++.|+.++++.+.+.+.+|.+|+..|... .+-+.|+|||||||||||.||.++|...+..|+.+.+.++.++|
T Consensus 662 tgi~w~digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~~~fisvKGPElL~Ky 741 (952)
T KOG0735|consen 662 TGIRWEDIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSNLRFISVKGPELLSKY 741 (952)
T ss_pred CCCCceecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCCeeEEEecCHHHHHHH
Confidence 34889999999999999999999999999999877 77788999999999999999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHHHhcCCeEEEEcCcchhhhhccccchhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCCCCCchH
Q 016911 283 RGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDA 362 (380)
Q Consensus 283 ~ge~e~~l~~lf~~A~~~~p~ILfIDEiD~l~~~~~~~~~~~~~~~~i~~~Ll~~ldgl~~~~~~VlVIatTN~~~~Ld~ 362 (380)
+|.+++.++.+|..|+..+|||||+||+|.++++|+ .+...+..+++++|+.+|||...-.+ |.|+|+|.+|+.+||
T Consensus 742 IGaSEq~vR~lF~rA~~a~PCiLFFDEfdSiAPkRG--hDsTGVTDRVVNQlLTelDG~Egl~G-V~i~aaTsRpdliDp 818 (952)
T KOG0735|consen 742 IGASEQNVRDLFERAQSAKPCILFFDEFDSIAPKRG--HDSTGVTDRVVNQLLTELDGAEGLDG-VYILAATSRPDLIDP 818 (952)
T ss_pred hcccHHHHHHHHHHhhccCCeEEEeccccccCcccC--CCCCCchHHHHHHHHHhhccccccce-EEEEEecCCccccCH
Confidence 999999999999999999999999999999999886 34456788999999999999976554 899999999999999
Q ss_pred HHHh--cccceeEecCCCCC
Q 016911 363 AMLR--RLEKRVSFSLIALT 380 (380)
Q Consensus 363 aLlr--RF~~~I~~plPd~~ 380 (380)
||+| |+|+.++.++|+.+
T Consensus 819 ALLRpGRlD~~v~C~~P~~~ 838 (952)
T KOG0735|consen 819 ALLRPGRLDKLVYCPLPDEP 838 (952)
T ss_pred hhcCCCccceeeeCCCCCcH
Confidence 9999 99999999999853
No 16
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=8.5e-28 Score=249.17 Aligned_cols=179 Identities=47% Similarity=0.768 Sum_probs=163.8
Q ss_pred hhhccCCCCccccccchHHHHHHHHHHHhccccCcccccc-cCCCCceEEEEcCCCCcHHHHHHHHHHhcCCeEEEEecc
Q 016911 198 DIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTG-LLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISAS 276 (380)
Q Consensus 198 ~~~~~~p~~~~~~l~Gl~~~k~~L~~~l~~~l~~~~~~~~-~~~~~~~vLL~GppGtGKT~la~ala~~l~~~~v~v~~s 276 (380)
++....+...|++++|++.+++.+++.+..++.+++.+.. ...+++++||+||||||||++|+++|.+++.+|+.++.+
T Consensus 231 ~~~~~~~~v~~~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~ 310 (494)
T COG0464 231 GVLFEDEDVTLDDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGS 310 (494)
T ss_pred ccccCCCCcceehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCH
Confidence 5556778899999999999999999999999999998887 478888999999999999999999999999999999999
Q ss_pred hhhhhhccchHHHHHHHHHHHHhcCCeEEEEcCcchhhhhccccchhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCC
Q 016911 277 SVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNL 356 (380)
Q Consensus 277 ~l~~~~~ge~e~~l~~lf~~A~~~~p~ILfIDEiD~l~~~~~~~~~~~~~~~~i~~~Ll~~ldgl~~~~~~VlVIatTN~ 356 (380)
++.++|+|++++.++.+|..|+..+|+||||||+|++.+.++..... ...+++++++.+++++..... |+||+|||+
T Consensus 311 ~l~sk~vGesek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~~~--~~~r~~~~lL~~~d~~e~~~~-v~vi~aTN~ 387 (494)
T COG0464 311 ELLSKWVGESEKNIRELFEKARKLAPSIIFIDEIDSLASGRGPSEDG--SGRRVVGQLLTELDGIEKAEG-VLVIAATNR 387 (494)
T ss_pred HHhccccchHHHHHHHHHHHHHcCCCcEEEEEchhhhhccCCCCCch--HHHHHHHHHHHHhcCCCccCc-eEEEecCCC
Confidence 99999999999999999999999999999999999999988644322 237899999999999876555 889999999
Q ss_pred CCCchHHHHh--cccceeEecCCCC
Q 016911 357 PWELDAAMLR--RLEKRVSFSLIAL 379 (380)
Q Consensus 357 ~~~Ld~aLlr--RF~~~I~~plPd~ 379 (380)
|+.+|++++| ||+..+++|+||.
T Consensus 388 p~~ld~a~lR~gRfd~~i~v~~pd~ 412 (494)
T COG0464 388 PDDLDPALLRPGRFDRLIYVPLPDL 412 (494)
T ss_pred ccccCHhhcccCccceEeecCCCCH
Confidence 9999999999 9999999999985
No 17
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=6.5e-28 Score=254.96 Aligned_cols=175 Identities=42% Similarity=0.646 Sum_probs=158.3
Q ss_pred CCCCccccccchHHHHHHHHHHHhccccCccccccc-CCCCceEEEEcCCCCcHHHHHHHHHHhcCCeEEEEecchhhhh
Q 016911 203 SPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSK 281 (380)
Q Consensus 203 ~p~~~~~~l~Gl~~~k~~L~~~l~~~l~~~~~~~~~-~~~~~~vLL~GppGtGKT~la~ala~~l~~~~v~v~~s~l~~~ 281 (380)
...++|.|+.|+++++++|.+.+ ..+++|+.|... ++.++++||+||||||||.||+|+|.+.+.||+.+++++++..
T Consensus 305 ~t~V~FkDVAG~deAK~El~E~V-~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEFvE~ 383 (774)
T KOG0731|consen 305 NTGVKFKDVAGVDEAKEELMEFV-KFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFVEM 383 (774)
T ss_pred CCCCccccccCcHHHHHHHHHHH-HHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCceeeechHHHHHH
Confidence 34578999999999999999975 557778777766 8999999999999999999999999999999999999999999
Q ss_pred hccchHHHHHHHHHHHHhcCCeEEEEcCcchhhhhccc--cchhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCCCCC
Q 016911 282 WRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGE--ARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWE 359 (380)
Q Consensus 282 ~~ge~e~~l~~lf~~A~~~~p~ILfIDEiD~l~~~~~~--~~~~~~~~~~i~~~Ll~~ldgl~~~~~~VlVIatTN~~~~ 359 (380)
++|....+++.+|..|+.++|+||||||||.++..+.. ....+......+++|+.+|||+... ..|+|+++||+++.
T Consensus 384 ~~g~~asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~-~~vi~~a~tnr~d~ 462 (774)
T KOG0731|consen 384 FVGVGASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETS-KGVIVLAATNRPDI 462 (774)
T ss_pred hcccchHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCC-CcEEEEeccCCccc
Confidence 99999999999999999999999999999999988842 2344555678999999999999766 66999999999999
Q ss_pred chHHHHh--cccceeEecCCCC
Q 016911 360 LDAAMLR--RLEKRVSFSLIAL 379 (380)
Q Consensus 360 Ld~aLlr--RF~~~I~~plPd~ 379 (380)
||++++| |||+.+.+++|+.
T Consensus 463 ld~allrpGRfdr~i~i~~p~~ 484 (774)
T KOG0731|consen 463 LDPALLRPGRFDRQIQIDLPDV 484 (774)
T ss_pred cCHHhcCCCccccceeccCCch
Confidence 9999999 9999999999986
No 18
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=9.7e-28 Score=224.10 Aligned_cols=179 Identities=41% Similarity=0.675 Sum_probs=163.0
Q ss_pred hccCCCCccccccchHHHHHHHHHHHhccccCccccccc-CCCCceEEEEcCCCCcHHHHHHHHHHhcCCeEEEEecchh
Q 016911 200 IRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSV 278 (380)
Q Consensus 200 ~~~~p~~~~~~l~Gl~~~k~~L~~~l~~~l~~~~~~~~~-~~~~~~vLL~GppGtGKT~la~ala~~l~~~~v~v~~s~l 278 (380)
....|+.+++.+.|++..++++++.+..|.++|++|..+ +..++++||+||||+|||.||+++|......|+.++++++
T Consensus 138 VeKvPDStYeMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht~c~firvsgsel 217 (404)
T KOG0728|consen 138 VEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSEL 217 (404)
T ss_pred hhhCCccHHHHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhcceEEEEechHHH
Confidence 445788999999999999999999999999999999887 8888999999999999999999999999999999999999
Q ss_pred hhhhccchHHHHHHHHHHHHhcCCeEEEEcCcchhhhhccccc-hhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCCC
Q 016911 279 VSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEAR-SEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLP 357 (380)
Q Consensus 279 ~~~~~ge~e~~l~~lf~~A~~~~p~ILfIDEiD~l~~~~~~~~-~~~~~~~~i~~~Ll~~ldgl~~~~~~VlVIatTN~~ 357 (380)
+.+|+|+....++.+|-.|+..+|+|||+||||+++..+.+.+ ..+...++..-+|++++||+... .++-||.+||+.
T Consensus 218 vqk~igegsrmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeat-knikvimatnri 296 (404)
T KOG0728|consen 218 VQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEAT-KNIKVIMATNRI 296 (404)
T ss_pred HHHHhhhhHHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhccccccc-cceEEEEecccc
Confidence 9999999999999999999999999999999999998875432 23445667778899999999754 458899999999
Q ss_pred CCchHHHHh--cccceeEecCCCC
Q 016911 358 WELDAAMLR--RLEKRVSFSLIAL 379 (380)
Q Consensus 358 ~~Ld~aLlr--RF~~~I~~plPd~ 379 (380)
+-||++++| |+++.|+||.|+.
T Consensus 297 dild~allrpgridrkiefp~p~e 320 (404)
T KOG0728|consen 297 DILDPALLRPGRIDRKIEFPPPNE 320 (404)
T ss_pred ccccHhhcCCCcccccccCCCCCH
Confidence 999999999 9999999999974
No 19
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=3.2e-27 Score=237.17 Aligned_cols=184 Identities=55% Similarity=0.881 Sum_probs=169.4
Q ss_pred ccchhhccCCCCccccccchHHHHHHHHHHHhccccCcccccccCCCCceEEEEcCCCCcHHHHHHHHHHhcCCeEEEEe
Q 016911 195 LCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNIS 274 (380)
Q Consensus 195 ~~~~~~~~~p~~~~~~l~Gl~~~k~~L~~~l~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~l~~~~v~v~ 274 (380)
+..++....+.+.|+++.|++.+++.+.+.+.++...++.|.+.-.+.+++||.||||+|||+|++++|.+++..|+.++
T Consensus 139 i~~EI~~~~~~v~~~di~gl~~~k~~l~e~vi~p~lr~d~F~glr~p~rglLLfGPpgtGKtmL~~aiAsE~~atff~iS 218 (428)
T KOG0740|consen 139 IRNEIGDTLRNVGWDDIAGLEDAKQSLKEAVILPLLRPDLFLGLREPVRGLLLFGPPGTGKTMLAKAIATESGATFFNIS 218 (428)
T ss_pred HHHHHhccCCcccccCCcchhhHHHHhhhhhhhcccchHhhhccccccchhheecCCCCchHHHHHHHHhhhcceEeecc
Confidence 34455566788899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhhhhccchHHHHHHHHHHHHhcCCeEEEEcCcchhhhhccccchhhHHHHHHHHHHHHHhcCCccC-CCcEEEEEE
Q 016911 275 ASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQS-DELVFVLAA 353 (380)
Q Consensus 275 ~s~l~~~~~ge~e~~l~~lf~~A~~~~p~ILfIDEiD~l~~~~~~~~~~~~~~~~i~~~Ll~~ldgl~~~-~~~VlVIat 353 (380)
++.+.++|+|++++.++.+|..|+...|+|+||||+|.++.++. ...++..+++..+++.+.++.... ..+|+||+|
T Consensus 219 assLtsK~~Ge~eK~vralf~vAr~~qPsvifidEidslls~Rs--~~e~e~srr~ktefLiq~~~~~s~~~drvlviga 296 (428)
T KOG0740|consen 219 ASSLTSKYVGESEKLVRALFKVARSLQPSVIFIDEIDSLLSKRS--DNEHESSRRLKTEFLLQFDGKNSAPDDRVLVIGA 296 (428)
T ss_pred HHHhhhhccChHHHHHHHHHHHHHhcCCeEEEechhHHHHhhcC--CcccccchhhhhHHHhhhccccCCCCCeEEEEec
Confidence 99999999999999999999999999999999999999999884 456677888999999999888544 457999999
Q ss_pred eCCCCCchHHHHhcccceeEecCCCCC
Q 016911 354 TNLPWELDAAMLRRLEKRVSFSLIALT 380 (380)
Q Consensus 354 TN~~~~Ld~aLlrRF~~~I~~plPd~~ 380 (380)
||+|+.+|.+++|||..++++|+|+++
T Consensus 297 TN~P~e~Dea~~Rrf~kr~yiplPd~e 323 (428)
T KOG0740|consen 297 TNRPWELDEAARRRFVKRLYIPLPDYE 323 (428)
T ss_pred CCCchHHHHHHHHHhhceeeecCCCHH
Confidence 999999999999999999999999974
No 20
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.94 E-value=1.6e-26 Score=250.19 Aligned_cols=181 Identities=45% Similarity=0.758 Sum_probs=163.4
Q ss_pred chhhccCCCCccccccchHHHHHHHHHHHhccccCccccccc-CCCCceEEEEcCCCCcHHHHHHHHHHhcCCeEEEEec
Q 016911 197 RDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISA 275 (380)
Q Consensus 197 ~~~~~~~p~~~~~~l~Gl~~~k~~L~~~l~~~l~~~~~~~~~-~~~~~~vLL~GppGtGKT~la~ala~~l~~~~v~v~~ 275 (380)
++.....|...|++++|++.+++.|.+.+.+++.+++.+... ..+++++||+||||||||++|+++|++++.+|+.+++
T Consensus 441 ~~~~~~~~~~~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~fi~v~~ 520 (733)
T TIGR01243 441 REVLVEVPNVRWSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGANFIAVRG 520 (733)
T ss_pred chhhccccccchhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEeh
Confidence 445556688899999999999999999999999999988876 6788999999999999999999999999999999999
Q ss_pred chhhhhhccchHHHHHHHHHHHHhcCCeEEEEcCcchhhhhccccchhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeC
Q 016911 276 SSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATN 355 (380)
Q Consensus 276 s~l~~~~~ge~e~~l~~lf~~A~~~~p~ILfIDEiD~l~~~~~~~~~~~~~~~~i~~~Ll~~ldgl~~~~~~VlVIatTN 355 (380)
+++.++|+|++++.++.+|..|+...|+||||||+|.+.+.++.. ......++++++|+.+||++... .+++||+|||
T Consensus 521 ~~l~~~~vGese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~-~~~~~~~~~~~~lL~~ldg~~~~-~~v~vI~aTn 598 (733)
T TIGR01243 521 PEILSKWVGESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGAR-FDTSVTDRIVNQLLTEMDGIQEL-SNVVVIAATN 598 (733)
T ss_pred HHHhhcccCcHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCC-CCccHHHHHHHHHHHHhhcccCC-CCEEEEEeCC
Confidence 999999999999999999999999999999999999999877542 22345678999999999998654 4589999999
Q ss_pred CCCCchHHHHh--cccceeEecCCCC
Q 016911 356 LPWELDAAMLR--RLEKRVSFSLIAL 379 (380)
Q Consensus 356 ~~~~Ld~aLlr--RF~~~I~~plPd~ 379 (380)
+++.+|++++| ||++.+++|+|+.
T Consensus 599 ~~~~ld~allRpgRfd~~i~v~~Pd~ 624 (733)
T TIGR01243 599 RPDILDPALLRPGRFDRLILVPPPDE 624 (733)
T ss_pred ChhhCCHhhcCCCccceEEEeCCcCH
Confidence 99999999998 9999999999985
No 21
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=99.94 E-value=2.4e-26 Score=232.22 Aligned_cols=177 Identities=42% Similarity=0.725 Sum_probs=157.7
Q ss_pred cCCCCccccccchHHHHHHHHHHHhccccCccccccc-CCCCceEEEEcCCCCcHHHHHHHHHHhcCCeEEEEecchhhh
Q 016911 202 GSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVS 280 (380)
Q Consensus 202 ~~p~~~~~~l~Gl~~~k~~L~~~l~~~l~~~~~~~~~-~~~~~~vLL~GppGtGKT~la~ala~~l~~~~v~v~~s~l~~ 280 (380)
..|..+|++|+|++.+++++++.+..++.+++.+... +.+++++||+||||||||++|+++|+.++.+++.+.++++..
T Consensus 138 ~~p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i~~s~l~~ 217 (398)
T PTZ00454 138 EKPDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRVVGSEFVQ 217 (398)
T ss_pred CCCCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHHH
Confidence 5688999999999999999999999999999988876 788999999999999999999999999999999999999999
Q ss_pred hhccchHHHHHHHHHHHHhcCCeEEEEcCcchhhhhccccc-hhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCCCCC
Q 016911 281 KWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEAR-SEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWE 359 (380)
Q Consensus 281 ~~~ge~e~~l~~lf~~A~~~~p~ILfIDEiD~l~~~~~~~~-~~~~~~~~i~~~Ll~~ldgl~~~~~~VlVIatTN~~~~ 359 (380)
.|.|+.+..++.+|..|+...|+||||||+|.+...+.... ..+....+++..++.+++++.... ++.||+|||+++.
T Consensus 218 k~~ge~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~-~v~VI~aTN~~d~ 296 (398)
T PTZ00454 218 KYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTT-NVKVIMATNRADT 296 (398)
T ss_pred HhcchhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCC-CEEEEEecCCchh
Confidence 99999999999999999999999999999999987663222 223345677888999999875443 5889999999999
Q ss_pred chHHHHh--cccceeEecCCCC
Q 016911 360 LDAAMLR--RLEKRVSFSLIAL 379 (380)
Q Consensus 360 Ld~aLlr--RF~~~I~~plPd~ 379 (380)
+|++++| ||++.|+|++|+.
T Consensus 297 LDpAllR~GRfd~~I~~~~P~~ 318 (398)
T PTZ00454 297 LDPALLRPGRLDRKIEFPLPDR 318 (398)
T ss_pred CCHHHcCCCcccEEEEeCCcCH
Confidence 9999998 9999999999984
No 22
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=99.93 E-value=5.2e-26 Score=235.04 Aligned_cols=179 Identities=34% Similarity=0.645 Sum_probs=155.0
Q ss_pred hhccCCCCccccccchHHHHHHHHHHHhccccCccccccc-CCCCceEEEEcCCCCcHHHHHHHHHHhcCCe--------
Q 016911 199 IIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTT-------- 269 (380)
Q Consensus 199 ~~~~~p~~~~~~l~Gl~~~k~~L~~~l~~~l~~~~~~~~~-~~~~~~vLL~GppGtGKT~la~ala~~l~~~-------- 269 (380)
+....|..+|++|+|+++.++++++.+..++.+++.+... +.+++++||+||||||||++|+++|++++.+
T Consensus 172 ~~~~~p~v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~ 251 (512)
T TIGR03689 172 VLEEVPDVTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDK 251 (512)
T ss_pred eeecCCCCCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCc
Confidence 4456788999999999999999999999999999988765 7888999999999999999999999998543
Q ss_pred --EEEEecchhhhhhccchHHHHHHHHHHHHhc----CCeEEEEcCcchhhhhccccchhhHHHHHHHHHHHHHhcCCcc
Q 016911 270 --FFNISASSVVSKWRGDSEKLIKVLFELARHH----APSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQ 343 (380)
Q Consensus 270 --~v~v~~s~l~~~~~ge~e~~l~~lf~~A~~~----~p~ILfIDEiD~l~~~~~~~~~~~~~~~~i~~~Ll~~ldgl~~ 343 (380)
|+.+..+++..+|.|++++.++.+|..++.. .|+||||||+|.++..++... .++..+.++++|+..||++..
T Consensus 252 ~~fl~v~~~eLl~kyvGete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~-s~d~e~~il~~LL~~LDgl~~ 330 (512)
T TIGR03689 252 SYFLNIKGPELLNKYVGETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGV-SSDVETTVVPQLLSELDGVES 330 (512)
T ss_pred eeEEeccchhhcccccchHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCc-cchHHHHHHHHHHHHhccccc
Confidence 5567778888999999999999999988764 689999999999988765422 233456788999999999865
Q ss_pred CCCcEEEEEEeCCCCCchHHHHh--cccceeEecCCCC
Q 016911 344 SDELVFVLAATNLPWELDAAMLR--RLEKRVSFSLIAL 379 (380)
Q Consensus 344 ~~~~VlVIatTN~~~~Ld~aLlr--RF~~~I~~plPd~ 379 (380)
. .+++||+|||+++.+|++++| ||+..|+|++|+.
T Consensus 331 ~-~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~ 367 (512)
T TIGR03689 331 L-DNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDA 367 (512)
T ss_pred C-CceEEEeccCChhhCCHhhcCccccceEEEeCCCCH
Confidence 4 458899999999999999999 9999999999984
No 23
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=99.93 E-value=1.3e-25 Score=226.77 Aligned_cols=180 Identities=44% Similarity=0.697 Sum_probs=157.5
Q ss_pred hhccCCCCccccccchHHHHHHHHHHHhccccCccccccc-CCCCceEEEEcCCCCcHHHHHHHHHHhcCCeEEEEecch
Q 016911 199 IIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASS 277 (380)
Q Consensus 199 ~~~~~p~~~~~~l~Gl~~~k~~L~~~l~~~l~~~~~~~~~-~~~~~~vLL~GppGtGKT~la~ala~~l~~~~v~v~~s~ 277 (380)
.....|...|++++|+++.++.+.+.+..++.+++.+..+ +.+++++||+||||||||++|+++|++++.+++.+++++
T Consensus 121 ~~~~~p~~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~~~ 200 (389)
T PRK03992 121 EVIESPNVTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSE 200 (389)
T ss_pred eecCCCCCCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCCEEEeehHH
Confidence 3446688899999999999999999999999999988776 788899999999999999999999999999999999999
Q ss_pred hhhhhccchHHHHHHHHHHHHhcCCeEEEEcCcchhhhhccccch-hhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCC
Q 016911 278 VVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARS-EHEASRRLKTELLIQMDGLTQSDELVFVLAATNL 356 (380)
Q Consensus 278 l~~~~~ge~e~~l~~lf~~A~~~~p~ILfIDEiD~l~~~~~~~~~-~~~~~~~i~~~Ll~~ldgl~~~~~~VlVIatTN~ 356 (380)
+...|.|+.++.++.+|..+....|+||||||+|.+...+..... ......+.+..++.+++++... .++.||+|||+
T Consensus 201 l~~~~~g~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~-~~v~VI~aTn~ 279 (389)
T PRK03992 201 LVQKFIGEGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPR-GNVKIIAATNR 279 (389)
T ss_pred HhHhhccchHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCC-CCEEEEEecCC
Confidence 999999999999999999999999999999999999876643221 1223455667788888877543 35889999999
Q ss_pred CCCchHHHHh--cccceeEecCCCC
Q 016911 357 PWELDAAMLR--RLEKRVSFSLIAL 379 (380)
Q Consensus 357 ~~~Ld~aLlr--RF~~~I~~plPd~ 379 (380)
++.+|++++| ||+..++|++|+.
T Consensus 280 ~~~ld~allRpgRfd~~I~v~~P~~ 304 (389)
T PRK03992 280 IDILDPAILRPGRFDRIIEVPLPDE 304 (389)
T ss_pred hhhCCHHHcCCccCceEEEECCCCH
Confidence 9999999998 9999999999985
No 24
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=6.4e-26 Score=235.98 Aligned_cols=175 Identities=42% Similarity=0.642 Sum_probs=157.2
Q ss_pred CCCCccccccchHHHHHHHHHHHhccccCccccccc-CCCCceEEEEcCCCCcHHHHHHHHHHhcCCeEEEEecchhhhh
Q 016911 203 SPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSK 281 (380)
Q Consensus 203 ~p~~~~~~l~Gl~~~k~~L~~~l~~~l~~~~~~~~~-~~~~~~vLL~GppGtGKT~la~ala~~l~~~~v~v~~s~l~~~ 281 (380)
....+|.|+.|.+++++++.+.+.. ++.|..|... .+-+++++|+||||||||+||+++|.+.+.||+.++.++++.-
T Consensus 144 ~~~v~F~DVAG~dEakeel~EiVdf-Lk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~FVem 222 (596)
T COG0465 144 QVKVTFADVAGVDEAKEELSELVDF-LKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM 222 (596)
T ss_pred ccCcChhhhcCcHHHHHHHHHHHHH-HhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCCceeccchhhhhh
Confidence 5677899999999999999997654 5556555544 7889999999999999999999999999999999999999999
Q ss_pred hccchHHHHHHHHHHHHhcCCeEEEEcCcchhhhhcccc-chhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCCCCCc
Q 016911 282 WRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEA-RSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWEL 360 (380)
Q Consensus 282 ~~ge~e~~l~~lf~~A~~~~p~ILfIDEiD~l~~~~~~~-~~~~~~~~~i~~~Ll~~ldgl~~~~~~VlVIatTN~~~~L 360 (380)
++|....++|.+|..|+.++||||||||+|.+...+..+ +..++.-++.+++++.+|||+.. +..|+||++||+|+-+
T Consensus 223 fVGvGAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~-~~gviviaaTNRpdVl 301 (596)
T COG0465 223 FVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGG-NEGVIVIAATNRPDVL 301 (596)
T ss_pred hcCCCcHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCCC-CCceEEEecCCCcccc
Confidence 999999999999999999999999999999999887533 44566678899999999999984 4568899999999999
Q ss_pred hHHHHh--cccceeEecCCCC
Q 016911 361 DAAMLR--RLEKRVSFSLIAL 379 (380)
Q Consensus 361 d~aLlr--RF~~~I~~plPd~ 379 (380)
|+||+| ||++.+.+++||.
T Consensus 302 D~ALlRpgRFDRqI~V~~PDi 322 (596)
T COG0465 302 DPALLRPGRFDRQILVELPDI 322 (596)
T ss_pred hHhhcCCCCcceeeecCCcch
Confidence 999999 9999999999985
No 25
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=2.6e-25 Score=212.97 Aligned_cols=176 Identities=40% Similarity=0.655 Sum_probs=159.7
Q ss_pred cCCCCccccccchHHHHHHHHHHHhccccCccccccc-CCCCceEEEEcCCCCcHHHHHHHHHHhcCCeEEEEecchhhh
Q 016911 202 GSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVS 280 (380)
Q Consensus 202 ~~p~~~~~~l~Gl~~~k~~L~~~l~~~l~~~~~~~~~-~~~~~~vLL~GppGtGKT~la~ala~~l~~~~v~v~~s~l~~ 280 (380)
...+.+|+.+.|+..+..++.+.+..++..+.++.++ ++||.+++||||||+|||.+|+++|..++.+++.+..+++.+
T Consensus 125 ~~~~~s~~~~ggl~~qirelre~ielpl~np~lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~lv~ 204 (388)
T KOG0651|consen 125 DPRNISFENVGGLFYQIRELREVIELPLTNPELFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATMGVNFLKVVSSALVD 204 (388)
T ss_pred CccccCHHHhCChHHHHHHHHhheEeeccCchhccccCCCCCceeEEeCCCCCchhHHHHHHHHhcCCceEEeeHhhhhh
Confidence 4456789999999999999999999999999999995 999999999999999999999999999999999999999999
Q ss_pred hhccchHHHHHHHHHHHHhcCCeEEEEcCcchhhhhcccc-chhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCCCCC
Q 016911 281 KWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEA-RSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWE 359 (380)
Q Consensus 281 ~~~ge~e~~l~~lf~~A~~~~p~ILfIDEiD~l~~~~~~~-~~~~~~~~~i~~~Ll~~ldgl~~~~~~VlVIatTN~~~~ 359 (380)
+|.|++.+.+++.|..|+...|||||+||||++.+.+... ...+...++.+-.|+++|+++..... |-+|.|||+|+.
T Consensus 205 kyiGEsaRlIRemf~yA~~~~pciifmdeiDAigGRr~se~Ts~dreiqrTLMeLlnqmdgfd~l~r-Vk~ImatNrpdt 283 (388)
T KOG0651|consen 205 KYIGESARLIRDMFRYAREVIPCIIFMDEIDAIGGRRFSEGTSSDREIQRTLMELLNQMDGFDTLHR-VKTIMATNRPDT 283 (388)
T ss_pred hhcccHHHHHHHHHHHHhhhCceEEeehhhhhhccEEeccccchhHHHHHHHHHHHHhhccchhccc-ccEEEecCCccc
Confidence 9999999999999999999999999999999999877432 23455567778889999999865544 789999999999
Q ss_pred chHHHHh--cccceeEecCCC
Q 016911 360 LDAAMLR--RLEKRVSFSLIA 378 (380)
Q Consensus 360 Ld~aLlr--RF~~~I~~plPd 378 (380)
|+|+|+| |.++.++.|+|.
T Consensus 284 LdpaLlRpGRldrk~~iPlpn 304 (388)
T KOG0651|consen 284 LDPALLRPGRLDRKVEIPLPN 304 (388)
T ss_pred cchhhcCCccccceeccCCcc
Confidence 9999999 999999999985
No 26
>CHL00195 ycf46 Ycf46; Provisional
Probab=99.92 E-value=2.2e-24 Score=222.70 Aligned_cols=170 Identities=26% Similarity=0.378 Sum_probs=143.2
Q ss_pred CCCccccccchHHHHHHHHHHHhccccCcccccccCCCCceEEEEcCCCCcHHHHHHHHHHhcCCeEEEEecchhhhhhc
Q 016911 204 PDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWR 283 (380)
Q Consensus 204 p~~~~~~l~Gl~~~k~~L~~~l~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~l~~~~v~v~~s~l~~~~~ 283 (380)
+...|+++.|++.+|+.+.+....... ......+.+++++||+||||||||++|+++|++++.+++.++++.+.+.++
T Consensus 223 ~~~~~~dvgGl~~lK~~l~~~~~~~~~--~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~~~~~l~~~~l~~~~v 300 (489)
T CHL00195 223 VNEKISDIGGLDNLKDWLKKRSTSFSK--QASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQLPLLRLDVGKLFGGIV 300 (489)
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHhhH--HHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEEEhHHhccccc
Confidence 566799999999999998864332111 111123578899999999999999999999999999999999999999999
Q ss_pred cchHHHHHHHHHHHHhcCCeEEEEcCcchhhhhccccchhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCCCCCchHH
Q 016911 284 GDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAA 363 (380)
Q Consensus 284 ge~e~~l~~lf~~A~~~~p~ILfIDEiD~l~~~~~~~~~~~~~~~~i~~~Ll~~ldgl~~~~~~VlVIatTN~~~~Ld~a 363 (380)
|+++..++.+|..|+...|+||||||+|.++..+.. ..+.....+++..++..|+. ...+++||+|||+++.+|++
T Consensus 301 Gese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~-~~d~~~~~rvl~~lL~~l~~---~~~~V~vIaTTN~~~~Ld~a 376 (489)
T CHL00195 301 GESESRMRQMIRIAEALSPCILWIDEIDKAFSNSES-KGDSGTTNRVLATFITWLSE---KKSPVFVVATANNIDLLPLE 376 (489)
T ss_pred ChHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccC-CCCchHHHHHHHHHHHHHhc---CCCceEEEEecCChhhCCHH
Confidence 999999999999999999999999999999875432 22344567888899988863 34569999999999999999
Q ss_pred HHh--cccceeEecCCCC
Q 016911 364 MLR--RLEKRVSFSLIAL 379 (380)
Q Consensus 364 Llr--RF~~~I~~plPd~ 379 (380)
++| ||++.+++++|+.
T Consensus 377 llR~GRFD~~i~v~lP~~ 394 (489)
T CHL00195 377 ILRKGRFDEIFFLDLPSL 394 (489)
T ss_pred HhCCCcCCeEEEeCCcCH
Confidence 998 9999999999984
No 27
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=99.92 E-value=7.5e-25 Score=227.47 Aligned_cols=176 Identities=43% Similarity=0.652 Sum_probs=152.8
Q ss_pred cCCCCccccccchHHHHHHHHHHHhccccCccccccc-CCCCceEEEEcCCCCcHHHHHHHHHHhcCCeEEEEecchhhh
Q 016911 202 GSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVS 280 (380)
Q Consensus 202 ~~p~~~~~~l~Gl~~~k~~L~~~l~~~l~~~~~~~~~-~~~~~~vLL~GppGtGKT~la~ala~~l~~~~v~v~~s~l~~ 280 (380)
..|..+|++++|++.+++++.+.+.. +..++.+... ..+++++||+||||||||++|+++|++++.+++.++++++..
T Consensus 48 ~~~~~~~~di~g~~~~k~~l~~~~~~-l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~ 126 (495)
T TIGR01241 48 EKPKVTFKDVAGIDEAKEELMEIVDF-LKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVE 126 (495)
T ss_pred CCCCCCHHHhCCHHHHHHHHHHHHHH-HHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCeeeccHHHHHH
Confidence 45788999999999999999987654 5666655544 677899999999999999999999999999999999999999
Q ss_pred hhccchHHHHHHHHHHHHhcCCeEEEEcCcchhhhhcccc-chhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCCCCC
Q 016911 281 KWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEA-RSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWE 359 (380)
Q Consensus 281 ~~~ge~e~~l~~lf~~A~~~~p~ILfIDEiD~l~~~~~~~-~~~~~~~~~i~~~Ll~~ldgl~~~~~~VlVIatTN~~~~ 359 (380)
.+.|..++.++.+|..++...|+||||||+|.+...++.. ...+....+++++|+.+||++.... .++||+|||+++.
T Consensus 127 ~~~g~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~-~v~vI~aTn~~~~ 205 (495)
T TIGR01241 127 MFVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNT-GVIVIAATNRPDV 205 (495)
T ss_pred HHhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCC-CeEEEEecCChhh
Confidence 9999999999999999999999999999999998876542 2223445678899999999886544 4889999999999
Q ss_pred chHHHHh--cccceeEecCCCC
Q 016911 360 LDAAMLR--RLEKRVSFSLIAL 379 (380)
Q Consensus 360 Ld~aLlr--RF~~~I~~plPd~ 379 (380)
+|++++| ||++.+++++|+.
T Consensus 206 ld~al~r~gRfd~~i~i~~Pd~ 227 (495)
T TIGR01241 206 LDPALLRPGRFDRQVVVDLPDI 227 (495)
T ss_pred cCHHHhcCCcceEEEEcCCCCH
Confidence 9999998 9999999999985
No 28
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=99.92 E-value=7.3e-25 Score=223.40 Aligned_cols=178 Identities=40% Similarity=0.652 Sum_probs=155.9
Q ss_pred ccCCCCccccccchHHHHHHHHHHHhccccCccccccc-CCCCceEEEEcCCCCcHHHHHHHHHHhcCCeEEEEecchhh
Q 016911 201 RGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVV 279 (380)
Q Consensus 201 ~~~p~~~~~~l~Gl~~~k~~L~~~l~~~l~~~~~~~~~-~~~~~~vLL~GppGtGKT~la~ala~~l~~~~v~v~~s~l~ 279 (380)
...|..+|++|.|++..++.+.+.+..++.+++.+..+ +.+++++||+||||||||++|+++|++++.+++.+.++++.
T Consensus 175 ~~~p~~~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~V~~seL~ 254 (438)
T PTZ00361 175 DKAPLESYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSATFLRVVGSELI 254 (438)
T ss_pred ccCCCCCHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCCEEEEecchhh
Confidence 35688899999999999999999999999999988776 78889999999999999999999999999999999999999
Q ss_pred hhhccchHHHHHHHHHHHHhcCCeEEEEcCcchhhhhccccc-hhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCCCC
Q 016911 280 SKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEAR-SEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPW 358 (380)
Q Consensus 280 ~~~~ge~e~~l~~lf~~A~~~~p~ILfIDEiD~l~~~~~~~~-~~~~~~~~i~~~Ll~~ldgl~~~~~~VlVIatTN~~~ 358 (380)
..|.|+.+..++.+|..|....|+||||||+|.+...+.... .......+.+.+++.+++++... .++.||+|||+++
T Consensus 255 ~k~~Ge~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~-~~V~VI~ATNr~d 333 (438)
T PTZ00361 255 QKYLGDGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSR-GDVKVIMATNRIE 333 (438)
T ss_pred hhhcchHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhccc-CCeEEEEecCChH
Confidence 999999999999999999999999999999999987664321 12223455667888999887543 3588999999999
Q ss_pred CchHHHHh--cccceeEecCCCC
Q 016911 359 ELDAAMLR--RLEKRVSFSLIAL 379 (380)
Q Consensus 359 ~Ld~aLlr--RF~~~I~~plPd~ 379 (380)
.+|++++| ||+..|+|++|+.
T Consensus 334 ~LDpaLlRpGRfd~~I~~~~Pd~ 356 (438)
T PTZ00361 334 SLDPALIRPGRIDRKIEFPNPDE 356 (438)
T ss_pred HhhHHhccCCeeEEEEEeCCCCH
Confidence 99999997 9999999999984
No 29
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.90 E-value=8.3e-24 Score=208.75 Aligned_cols=137 Identities=21% Similarity=0.216 Sum_probs=117.7
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHhcCCeEEEEecchhhhhhccchHHHHHHHHHHHHh-----cCCeEEEEcCcchh
Q 016911 239 LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARH-----HAPSTIFLDEIDAI 313 (380)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~la~ala~~l~~~~v~v~~s~l~~~~~ge~e~~l~~lf~~A~~-----~~p~ILfIDEiD~l 313 (380)
++++++++||||||||||++|+++|++++.+++.++++++.++|.|++++.++.+|..|.. .+||||||||||.+
T Consensus 145 ik~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~sk~vGEsEk~IR~~F~~A~~~a~~~~aPcVLFIDEIDA~ 224 (413)
T PLN00020 145 IKVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELESENAGEPGKLIRQRYREAADIIKKKGKMSCLFINDLDAG 224 (413)
T ss_pred CCCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcCcCCcHHHHHHHHHHHHHHHhhccCCCeEEEEehhhhc
Confidence 6889999999999999999999999999999999999999999999999999999999975 46999999999999
Q ss_pred hhhccccchhhHHHHHH-HHHHHHHhcCCc-----------cCCCcEEEEEEeCCCCCchHHHHh--cccceeEecCCCC
Q 016911 314 ISQRGEARSEHEASRRL-KTELLIQMDGLT-----------QSDELVFVLAATNLPWELDAAMLR--RLEKRVSFSLIAL 379 (380)
Q Consensus 314 ~~~~~~~~~~~~~~~~i-~~~Ll~~ldgl~-----------~~~~~VlVIatTN~~~~Ld~aLlr--RF~~~I~~plPd~ 379 (380)
++.+... +.....++ ..+|++.+|+.. .....|+||+|||+|+.||++|+| ||++.+ .+|+.
T Consensus 225 ~g~r~~~--~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V~VIaTTNrpd~LDpALlRpGRfDk~i--~lPd~ 300 (413)
T PLN00020 225 AGRFGTT--QYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPRVPIIVTGNDFSTLYAPLIRDGRMEKFY--WAPTR 300 (413)
T ss_pred CCCCCCC--CcchHHHHHHHHHHHHhcCCccccccccccccccCCCceEEEeCCCcccCCHhHcCCCCCCcee--CCCCH
Confidence 9887532 23333444 478999888631 345679999999999999999999 999864 57873
No 30
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=99.90 E-value=2.3e-23 Score=208.41 Aligned_cols=178 Identities=44% Similarity=0.728 Sum_probs=153.3
Q ss_pred ccCCCCccccccchHHHHHHHHHHHhccccCccccccc-CCCCceEEEEcCCCCcHHHHHHHHHHhcCCeEEEEecchhh
Q 016911 201 RGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVV 279 (380)
Q Consensus 201 ~~~p~~~~~~l~Gl~~~k~~L~~~l~~~l~~~~~~~~~-~~~~~~vLL~GppGtGKT~la~ala~~l~~~~v~v~~s~l~ 279 (380)
...|...|++++|+++.++.+.+.+..++.+++.+..+ +.+++++||+||||||||++|+++|+.++.+++.+.++++.
T Consensus 114 ~~~p~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~~~~l~ 193 (364)
T TIGR01242 114 EERPNVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELV 193 (364)
T ss_pred ccCCCCCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCCEEecchHHHH
Confidence 35688899999999999999999999998888887766 77889999999999999999999999999999999999999
Q ss_pred hhhccchHHHHHHHHHHHHhcCCeEEEEcCcchhhhhccccc-hhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCCCC
Q 016911 280 SKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEAR-SEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPW 358 (380)
Q Consensus 280 ~~~~ge~e~~l~~lf~~A~~~~p~ILfIDEiD~l~~~~~~~~-~~~~~~~~i~~~Ll~~ldgl~~~~~~VlVIatTN~~~ 358 (380)
..+.|+....++.+|..+....|+||||||+|.+...+.... .......+.+..++..++++... .++.||+|||+++
T Consensus 194 ~~~~g~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~-~~v~vI~ttn~~~ 272 (364)
T TIGR01242 194 RKYIGEGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPR-GNVKVIAATNRPD 272 (364)
T ss_pred HHhhhHHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCC-CCEEEEEecCChh
Confidence 999999999999999999999999999999999987654221 11223445667788888876433 4588999999999
Q ss_pred CchHHHHh--cccceeEecCCCC
Q 016911 359 ELDAAMLR--RLEKRVSFSLIAL 379 (380)
Q Consensus 359 ~Ld~aLlr--RF~~~I~~plPd~ 379 (380)
.+|+++++ ||+..++|++|+.
T Consensus 273 ~ld~al~r~grfd~~i~v~~P~~ 295 (364)
T TIGR01242 273 ILDPALLRPGRFDRIIEVPLPDF 295 (364)
T ss_pred hCChhhcCcccCceEEEeCCcCH
Confidence 99999998 9999999999984
No 31
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=2.4e-23 Score=225.57 Aligned_cols=175 Identities=39% Similarity=0.726 Sum_probs=157.7
Q ss_pred cCCCCccccccchHHHHHHHHHHHhccccCccccccc-CCCCceEEEEcCCCCcHHHHHHHHHHhc-----CCeEEEEec
Q 016911 202 GSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATEC-----KTTFFNISA 275 (380)
Q Consensus 202 ~~p~~~~~~l~Gl~~~k~~L~~~l~~~l~~~~~~~~~-~~~~~~vLL~GppGtGKT~la~ala~~l-----~~~~v~v~~ 275 (380)
....+.|++++|++..+..|++.+..++.|++.|... +.|++++|++||||||||+.|+++|..+ +..|+.-+.
T Consensus 258 ~~~~v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~~itpPrgvL~~GppGTGkTl~araLa~~~s~~~~kisffmrkg 337 (1080)
T KOG0732|consen 258 VDSSVGFDSVGGLENYINQLKEMVLLPLLYPEFFDNFNITPPRGVLFHGPPGTGKTLMARALAAACSRGNRKISFFMRKG 337 (1080)
T ss_pred hhcccCccccccHHHHHHHHHHHHHhHhhhhhHhhhcccCCCcceeecCCCCCchhHHHHhhhhhhcccccccchhhhcC
Confidence 3466789999999999999999999999999999987 9999999999999999999999999988 557788888
Q ss_pred chhhhhhccchHHHHHHHHHHHHhcCCeEEEEcCcchhhhhccccchhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeC
Q 016911 276 SSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATN 355 (380)
Q Consensus 276 s~l~~~~~ge~e~~l~~lf~~A~~~~p~ILfIDEiD~l~~~~~~~~~~~~~~~~i~~~Ll~~ldgl~~~~~~VlVIatTN 355 (380)
++..++|+|+.+..++.+|+.|+...|+|||+||||-+.+-+...+ ......++..|+..|||+..+. .|+||+|||
T Consensus 338 aD~lskwvgEaERqlrllFeeA~k~qPSIIffdeIdGlapvrSskq--Eqih~SIvSTLLaLmdGldsRg-qVvvigATn 414 (1080)
T KOG0732|consen 338 ADCLSKWVGEAERQLRLLFEEAQKTQPSIIFFDEIDGLAPVRSSKQ--EQIHASIVSTLLALMDGLDSRG-QVVVIGATN 414 (1080)
T ss_pred chhhccccCcHHHHHHHHHHHHhccCceEEeccccccccccccchH--HHhhhhHHHHHHHhccCCCCCC-ceEEEcccC
Confidence 9999999999999999999999999999999999999998875432 3334568899999999997554 588999999
Q ss_pred CCCCchHHHHh--cccceeEecCCCC
Q 016911 356 LPWELDAAMLR--RLEKRVSFSLIAL 379 (380)
Q Consensus 356 ~~~~Ld~aLlr--RF~~~I~~plPd~ 379 (380)
+++.+|++++| ||++.++|++|+.
T Consensus 415 Rpda~dpaLRRPgrfdref~f~lp~~ 440 (1080)
T KOG0732|consen 415 RPDAIDPALRRPGRFDREFYFPLPDV 440 (1080)
T ss_pred CccccchhhcCCcccceeEeeeCCch
Confidence 99999999999 9999999999974
No 32
>CHL00176 ftsH cell division protein; Validated
Probab=99.89 E-value=1e-22 Score=216.26 Aligned_cols=175 Identities=39% Similarity=0.621 Sum_probs=149.8
Q ss_pred CCCCccccccchHHHHHHHHHHHhccccCccccccc-CCCCceEEEEcCCCCcHHHHHHHHHHhcCCeEEEEecchhhhh
Q 016911 203 SPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSK 281 (380)
Q Consensus 203 ~p~~~~~~l~Gl~~~k~~L~~~l~~~l~~~~~~~~~-~~~~~~vLL~GppGtGKT~la~ala~~l~~~~v~v~~s~l~~~ 281 (380)
.+..+|+++.|++++++++.+.+.. ++.++.+... ..+++++||+||||||||++|+++|++++.+++.++++++...
T Consensus 177 ~~~~~f~dv~G~~~~k~~l~eiv~~-lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p~i~is~s~f~~~ 255 (638)
T CHL00176 177 DTGITFRDIAGIEEAKEEFEEVVSF-LKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSEFVEM 255 (638)
T ss_pred CCCCCHHhccChHHHHHHHHHHHHH-HhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeeeccHHHHHHH
Confidence 3567899999999999999987544 5566655554 6778999999999999999999999999999999999999988
Q ss_pred hccchHHHHHHHHHHHHhcCCeEEEEcCcchhhhhcccc-chhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCCCCCc
Q 016911 282 WRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEA-RSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWEL 360 (380)
Q Consensus 282 ~~ge~e~~l~~lf~~A~~~~p~ILfIDEiD~l~~~~~~~-~~~~~~~~~i~~~Ll~~ldgl~~~~~~VlVIatTN~~~~L 360 (380)
+.|.....++.+|..|....|+||||||+|.+...++.. +..+...+..++.|+.++|++... .+++||++||+++.+
T Consensus 256 ~~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~-~~ViVIaaTN~~~~L 334 (638)
T CHL00176 256 FVGVGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGN-KGVIVIAATNRVDIL 334 (638)
T ss_pred hhhhhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCC-CCeeEEEecCchHhh
Confidence 888888999999999999999999999999998765432 223444567888999999988644 458899999999999
Q ss_pred hHHHHh--cccceeEecCCCC
Q 016911 361 DAAMLR--RLEKRVSFSLIAL 379 (380)
Q Consensus 361 d~aLlr--RF~~~I~~plPd~ 379 (380)
|++++| ||++.+.+++|+.
T Consensus 335 D~ALlRpGRFd~~I~v~lPd~ 355 (638)
T CHL00176 335 DAALLRPGRFDRQITVSLPDR 355 (638)
T ss_pred hhhhhccccCceEEEECCCCH
Confidence 999998 9999999999985
No 33
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.88 E-value=3.4e-22 Score=216.57 Aligned_cols=174 Identities=44% Similarity=0.719 Sum_probs=155.4
Q ss_pred CCCCccccccchHHHHHHHHHHHhccccCccccccc-CCCCceEEEEcCCCCcHHHHHHHHHHhcCCeEEEEecchhhhh
Q 016911 203 SPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSK 281 (380)
Q Consensus 203 ~p~~~~~~l~Gl~~~k~~L~~~l~~~l~~~~~~~~~-~~~~~~vLL~GppGtGKT~la~ala~~l~~~~v~v~~s~l~~~ 281 (380)
.+..+|++|+|++..++.+.+.+..++.+++.+... +.+++++||+||||||||++++++|++++.+++.++++++...
T Consensus 172 ~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~~~i~i~~~~i~~~ 251 (733)
T TIGR01243 172 VPKVTYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGAYFISINGPEIMSK 251 (733)
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEecHHHhcc
Confidence 367789999999999999999999999999988776 7888999999999999999999999999999999999999999
Q ss_pred hccchHHHHHHHHHHHHhcCCeEEEEcCcchhhhhccccchhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCCCCCch
Q 016911 282 WRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELD 361 (380)
Q Consensus 282 ~~ge~e~~l~~lf~~A~~~~p~ILfIDEiD~l~~~~~~~~~~~~~~~~i~~~Ll~~ldgl~~~~~~VlVIatTN~~~~Ld 361 (380)
+.|+.+..++.+|..+....|+||||||+|.+.+.++.. .....+++++.|+..++++... ..++||++||+++.+|
T Consensus 252 ~~g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~--~~~~~~~~~~~Ll~~ld~l~~~-~~vivI~atn~~~~ld 328 (733)
T TIGR01243 252 YYGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEV--TGEVEKRVVAQLLTLMDGLKGR-GRVIVIGATNRPDALD 328 (733)
T ss_pred cccHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCC--cchHHHHHHHHHHHHhhccccC-CCEEEEeecCChhhcC
Confidence 999999999999999999999999999999998876532 2234467888999999988543 4588999999999999
Q ss_pred HHHHh--cccceeEecCCCC
Q 016911 362 AAMLR--RLEKRVSFSLIAL 379 (380)
Q Consensus 362 ~aLlr--RF~~~I~~plPd~ 379 (380)
+++++ ||+..+++++|+.
T Consensus 329 ~al~r~gRfd~~i~i~~P~~ 348 (733)
T TIGR01243 329 PALRRPGRFDREIVIRVPDK 348 (733)
T ss_pred HHHhCchhccEEEEeCCcCH
Confidence 99998 9999999999974
No 34
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.88 E-value=7.9e-22 Score=166.74 Aligned_cols=130 Identities=40% Similarity=0.665 Sum_probs=116.5
Q ss_pred EEEEcCCCCcHHHHHHHHHHhcCCeEEEEecchhhhhhccchHHHHHHHHHHHHhcC-CeEEEEcCcchhhhhccccchh
Q 016911 245 ILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHA-PSTIFLDEIDAIISQRGEARSE 323 (380)
Q Consensus 245 vLL~GppGtGKT~la~ala~~l~~~~v~v~~s~l~~~~~ge~e~~l~~lf~~A~~~~-p~ILfIDEiD~l~~~~~~~~~~ 323 (380)
+||+||||||||++++.+|+.++.+++.++++++.+.+.++..+.++.+|..+.... |+||||||+|.+.+..+ ...
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~vl~iDe~d~l~~~~~--~~~ 78 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSELISSYAGDSEQKIRDFFKKAKKSAKPCVLFIDEIDKLFPKSQ--PSS 78 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHHHTSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGTSHHCS--TSS
T ss_pred CEEECcCCCCeeHHHHHHHhhcccccccccccccccccccccccccccccccccccccceeeeeccchhcccccc--ccc
Confidence 689999999999999999999999999999999998889999999999999999887 99999999999988772 223
Q ss_pred hHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCCCCCchHHHH-hcccceeEecC
Q 016911 324 HEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAML-RRLEKRVSFSL 376 (380)
Q Consensus 324 ~~~~~~i~~~Ll~~ldgl~~~~~~VlVIatTN~~~~Ld~aLl-rRF~~~I~~pl 376 (380)
......+.+.|+..++.......+++||+|||.++.++++++ +||+..+++|+
T Consensus 79 ~~~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~~~~i~~~l~~~rf~~~i~~~~ 132 (132)
T PF00004_consen 79 SSFEQRLLNQLLSLLDNPSSKNSRVIVIATTNSPDKIDPALLRSRFDRRIEFPL 132 (132)
T ss_dssp SHHHHHHHHHHHHHHHTTTTTSSSEEEEEEESSGGGSCHHHHSTTSEEEEEE-S
T ss_pred ccccccccceeeecccccccccccceeEEeeCChhhCCHhHHhCCCcEEEEcCC
Confidence 445677888999999988776677999999999999999999 99999999985
No 35
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=5.5e-22 Score=205.30 Aligned_cols=171 Identities=39% Similarity=0.677 Sum_probs=156.5
Q ss_pred CCCccccccchHHHHHHHHHHHhccccCccccccc-CCCCceEEEEcCCCCcHHHHHHHHHHhcCCeEEEEecchhhhhh
Q 016911 204 PDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKW 282 (380)
Q Consensus 204 p~~~~~~l~Gl~~~k~~L~~~l~~~l~~~~~~~~~-~~~~~~vLL~GppGtGKT~la~ala~~l~~~~v~v~~s~l~~~~ 282 (380)
+... .++.|+......+.+.+..++.++..+... +++++++|+|||||+|||.+++++|++.+..++.+++++++.++
T Consensus 180 ~~~~-~~~gg~~~~~~~i~e~v~~pl~~~~~~~s~g~~~prg~Ll~gppg~Gkt~l~~aVa~e~~a~~~~i~~peli~k~ 258 (693)
T KOG0730|consen 180 PEVG-DDIGGLKRQLSVIRELVELPLRHPALFKSIGIKPPRGLLLYGPPGTGKTFLVRAVANEYGAFLFLINGPELISKF 258 (693)
T ss_pred cccc-cccchhHHHHHHHHHHHHhhhcchhhhhhcCCCCCCCccccCCCCCChHHHHHHHHHHhCceeEecccHHHHHhc
Confidence 3444 688999999999999999999999988766 89999999999999999999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHHHhcC-CeEEEEcCcchhhhhccccchhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCCCCCch
Q 016911 283 RGDSEKLIKVLFELARHHA-PSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELD 361 (380)
Q Consensus 283 ~ge~e~~l~~lf~~A~~~~-p~ILfIDEiD~l~~~~~~~~~~~~~~~~i~~~Ll~~ldgl~~~~~~VlVIatTN~~~~Ld 361 (380)
.|++++.++..|+.|...+ |++|||||+|.+.+++..... +.+++..+++..+|+... ...++||++||+|..||
T Consensus 259 ~gEte~~LR~~f~~a~k~~~psii~IdEld~l~p~r~~~~~---~e~Rv~sqlltL~dg~~~-~~~vivl~atnrp~sld 334 (693)
T KOG0730|consen 259 PGETESNLRKAFAEALKFQVPSIIFIDELDALCPKREGADD---VESRVVSQLLTLLDGLKP-DAKVIVLAATNRPDSLD 334 (693)
T ss_pred ccchHHHHHHHHHHHhccCCCeeEeHHhHhhhCCcccccch---HHHHHHHHHHHHHhhCcC-cCcEEEEEecCCccccC
Confidence 9999999999999999999 999999999999998765433 678899999999999873 45588999999999999
Q ss_pred HHHHh-cccceeEecCCCC
Q 016911 362 AAMLR-RLEKRVSFSLIAL 379 (380)
Q Consensus 362 ~aLlr-RF~~~I~~plPd~ 379 (380)
++++| ||++.+++..|+.
T Consensus 335 ~alRRgRfd~ev~IgiP~~ 353 (693)
T KOG0730|consen 335 PALRRGRFDREVEIGIPGS 353 (693)
T ss_pred hhhhcCCCcceeeecCCCc
Confidence 99998 9999999999984
No 36
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=99.85 E-value=4.3e-21 Score=205.01 Aligned_cols=174 Identities=39% Similarity=0.616 Sum_probs=147.1
Q ss_pred CCCccccccchHHHHHHHHHHHhccccCccccccc-CCCCceEEEEcCCCCcHHHHHHHHHHhcCCeEEEEecchhhhhh
Q 016911 204 PDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKW 282 (380)
Q Consensus 204 p~~~~~~l~Gl~~~k~~L~~~l~~~l~~~~~~~~~-~~~~~~vLL~GppGtGKT~la~ala~~l~~~~v~v~~s~l~~~~ 282 (380)
....|+++.|.+..++.+.+.+.. +..+..+... ...+++++|+||||||||+++++++++++.+++.++++++...+
T Consensus 147 ~~~~~~di~g~~~~~~~l~~i~~~-~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~~~~f~~is~~~~~~~~ 225 (644)
T PRK10733 147 IKTTFADVAGCDEAKEEVAELVEY-LREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMF 225 (644)
T ss_pred hhCcHHHHcCHHHHHHHHHHHHHH-hhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCEEEEehHHhHHhh
Confidence 345689999999999999987655 3333333332 45668899999999999999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHHHhcCCeEEEEcCcchhhhhcccc-chhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCCCCCch
Q 016911 283 RGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEA-RSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELD 361 (380)
Q Consensus 283 ~ge~e~~l~~lf~~A~~~~p~ILfIDEiD~l~~~~~~~-~~~~~~~~~i~~~Ll~~ldgl~~~~~~VlVIatTN~~~~Ld 361 (380)
.+.....++.+|..+....|+||||||+|.+...+... ...+....++++.++.+||++... ..++||+|||+++.+|
T Consensus 226 ~g~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~-~~vivIaaTN~p~~lD 304 (644)
T PRK10733 226 VGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGN-EGIIVIAATNRPDVLD 304 (644)
T ss_pred hcccHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCC-CCeeEEEecCChhhcC
Confidence 99999999999999999999999999999998876532 223344567889999999998654 4588999999999999
Q ss_pred HHHHh--cccceeEecCCCC
Q 016911 362 AAMLR--RLEKRVSFSLIAL 379 (380)
Q Consensus 362 ~aLlr--RF~~~I~~plPd~ 379 (380)
++++| ||++.+++++|+.
T Consensus 305 ~Al~RpgRfdr~i~v~~Pd~ 324 (644)
T PRK10733 305 PALLRPGRFDRQVVVGLPDV 324 (644)
T ss_pred HHHhCCcccceEEEcCCCCH
Confidence 99998 9999999999984
No 37
>CHL00206 ycf2 Ycf2; Provisional
Probab=99.85 E-value=1.6e-21 Score=219.58 Aligned_cols=133 Identities=24% Similarity=0.386 Sum_probs=112.7
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHhcCCeEEEEecchhhhhh----------cc------------------------
Q 016911 239 LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKW----------RG------------------------ 284 (380)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~la~ala~~l~~~~v~v~~s~l~~~~----------~g------------------------ 284 (380)
..+++|+||+||||||||.||+|+|.+++.||+.+++++++..+ .|
T Consensus 1627 l~pPKGILLiGPPGTGKTlLAKALA~es~VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~~~~~~e~~e~~n 1706 (2281)
T CHL00206 1627 LSPSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDIDRDLDTELLTMMN 1706 (2281)
T ss_pred CCCCCceEEECCCCCCHHHHHHHHHHhcCCceEEEEHHHHhhcccccccccccccccccccccccccccccchhhhhhcc
Confidence 68899999999999999999999999999999999999998643 11
Q ss_pred -------ch--HHHHHHHHHHHHhcCCeEEEEcCcchhhhhccccchhhHHHHHHHHHHHHHhcCCc--cCCCcEEEEEE
Q 016911 285 -------DS--EKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT--QSDELVFVLAA 353 (380)
Q Consensus 285 -------e~--e~~l~~lf~~A~~~~p~ILfIDEiD~l~~~~~~~~~~~~~~~~i~~~Ll~~ldgl~--~~~~~VlVIat 353 (380)
.. ...++.+|+.|+..+||||||||||.+..... ....+++|+.+|++.. ...++|+||||
T Consensus 1707 ~~~~~m~~~e~~~rIr~lFelARk~SPCIIFIDEIDaL~~~ds--------~~ltL~qLLneLDg~~~~~s~~~VIVIAA 1778 (2281)
T CHL00206 1707 ALTMDMMPKIDRFYITLQFELAKAMSPCIIWIPNIHDLNVNES--------NYLSLGLLVNSLSRDCERCSTRNILVIAS 1778 (2281)
T ss_pred hhhhhhhhhhhHHHHHHHHHHHHHCCCeEEEEEchhhcCCCcc--------ceehHHHHHHHhccccccCCCCCEEEEEe
Confidence 12 23478899999999999999999999976421 1224678899999764 23567999999
Q ss_pred eCCCCCchHHHHh--cccceeEecCCCC
Q 016911 354 TNLPWELDAAMLR--RLEKRVSFSLIAL 379 (380)
Q Consensus 354 TN~~~~Ld~aLlr--RF~~~I~~plPd~ 379 (380)
||+|+.|||||+| ||++.|++++|+.
T Consensus 1779 TNRPD~LDPALLRPGRFDR~I~Ir~Pd~ 1806 (2281)
T CHL00206 1779 THIPQKVDPALIAPNKLNTCIKIRRLLI 1806 (2281)
T ss_pred CCCcccCCHhHcCCCCCCeEEEeCCCCc
Confidence 9999999999999 9999999999985
No 38
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.84 E-value=6.2e-21 Score=193.01 Aligned_cols=176 Identities=33% Similarity=0.514 Sum_probs=147.4
Q ss_pred CCCCccccc--cchHHHHHHH-HHHHhccccCccccccc-CCCCceEEEEcCCCCcHHHHHHHHHHhcCC-eEEEEecch
Q 016911 203 SPDVKWESI--KGLENAKRLL-KEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKT-TFFNISASS 277 (380)
Q Consensus 203 ~p~~~~~~l--~Gl~~~k~~L-~~~l~~~l~~~~~~~~~-~~~~~~vLL~GppGtGKT~la~ala~~l~~-~~v~v~~s~ 277 (380)
.|+..|+++ .|++.....+ +++.....-.|+..... +++-+++|||||||||||.+||.+...++. +--.+++.+
T Consensus 213 ~Pdf~Fe~mGIGGLd~EFs~IFRRAFAsRvFpp~vie~lGi~HVKGiLLyGPPGTGKTLiARqIGkMLNArePKIVNGPe 292 (744)
T KOG0741|consen 213 NPDFNFESMGIGGLDKEFSDIFRRAFASRVFPPEVIEQLGIKHVKGILLYGPPGTGKTLIARQIGKMLNAREPKIVNGPE 292 (744)
T ss_pred CCCCChhhcccccchHHHHHHHHHHHHhhcCCHHHHHHcCccceeeEEEECCCCCChhHHHHHHHHHhcCCCCcccCcHH
Confidence 355566654 6787655544 45555555666766666 788899999999999999999999999965 455699999
Q ss_pred hhhhhccchHHHHHHHHHHHHhc--------CCeEEEEcCcchhhhhccccchhhHHHHHHHHHHHHHhcCCccCCCcEE
Q 016911 278 VVSKWRGDSEKLIKVLFELARHH--------APSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVF 349 (380)
Q Consensus 278 l~~~~~ge~e~~l~~lf~~A~~~--------~p~ILfIDEiD~l~~~~~~~~~~~~~~~~i~~~Ll~~ldgl~~~~~~Vl 349 (380)
+.++|+|+++..++.+|..|..- .-.||++||||+++.+|++......+...++++||..|||+..-+ +++
T Consensus 293 IL~KYVGeSE~NvR~LFaDAEeE~r~~g~~SgLHIIIFDEiDAICKqRGS~~g~TGVhD~VVNQLLsKmDGVeqLN-NIL 371 (744)
T KOG0741|consen 293 ILNKYVGESEENVRKLFADAEEEQRRLGANSGLHIIIFDEIDAICKQRGSMAGSTGVHDTVVNQLLSKMDGVEQLN-NIL 371 (744)
T ss_pred HHHHhhcccHHHHHHHHHhHHHHHHhhCccCCceEEEehhhHHHHHhcCCCCCCCCccHHHHHHHHHhcccHHhhh-cEE
Confidence 99999999999999999988632 124999999999999998877777888899999999999997554 499
Q ss_pred EEEEeCCCCCchHHHHh--cccceeEecCCCC
Q 016911 350 VLAATNLPWELDAAMLR--RLEKRVSFSLIAL 379 (380)
Q Consensus 350 VIatTN~~~~Ld~aLlr--RF~~~I~~plPd~ 379 (380)
||+.||+.+.+|+||+| ||+..+++.+||-
T Consensus 372 VIGMTNR~DlIDEALLRPGRlEVqmEIsLPDE 403 (744)
T KOG0741|consen 372 VIGMTNRKDLIDEALLRPGRLEVQMEISLPDE 403 (744)
T ss_pred EEeccCchhhHHHHhcCCCceEEEEEEeCCCc
Confidence 99999999999999999 9999999999985
No 39
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.77 E-value=3.3e-18 Score=163.74 Aligned_cols=161 Identities=17% Similarity=0.237 Sum_probs=117.9
Q ss_pred ccccccchHHHHHHHHHHHhccccCccccccc---CCCCceEEEEcCCCCcHHHHHHHHHHhc-------CCeEEEEecc
Q 016911 207 KWESIKGLENAKRLLKEAVVMPIKYPKYFTGL---LSPWKGILLFGPPGTGKTMLAKAVATEC-------KTTFFNISAS 276 (380)
Q Consensus 207 ~~~~l~Gl~~~k~~L~~~l~~~l~~~~~~~~~---~~~~~~vLL~GppGtGKT~la~ala~~l-------~~~~v~v~~s 276 (380)
.+++++|++.+|+.+++.+.+........... .....+++|+||||||||++|+++|+.+ ..+++.++++
T Consensus 4 ~l~~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~ 83 (261)
T TIGR02881 4 ELSRMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERA 83 (261)
T ss_pred HHHHhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHH
Confidence 36789999999999998766543322211222 2334689999999999999999999875 3478899999
Q ss_pred hhhhhhccchHHHHHHHHHHHHhcCCeEEEEcCcchhhhhccccchhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCC
Q 016911 277 SVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNL 356 (380)
Q Consensus 277 ~l~~~~~ge~e~~l~~lf~~A~~~~p~ILfIDEiD~l~~~~~~~~~~~~~~~~i~~~Ll~~ldgl~~~~~~VlVIatTN~ 356 (380)
++.+.++|+....++.+|..+. ++||||||+|.+....+ .......+..|+..++.. ...+++|++++.
T Consensus 84 ~l~~~~~g~~~~~~~~~~~~a~---~~VL~IDE~~~L~~~~~-----~~~~~~~i~~Ll~~~e~~---~~~~~vila~~~ 152 (261)
T TIGR02881 84 DLVGEYIGHTAQKTREVIKKAL---GGVLFIDEAYSLARGGE-----KDFGKEAIDTLVKGMEDN---RNEFVLILAGYS 152 (261)
T ss_pred HhhhhhccchHHHHHHHHHhcc---CCEEEEechhhhccCCc-----cchHHHHHHHHHHHHhcc---CCCEEEEecCCc
Confidence 9999999999998888888775 57999999999964211 122344567788777543 344556666543
Q ss_pred CC-----CchHHHHhcccceeEecCCC
Q 016911 357 PW-----ELDAAMLRRLEKRVSFSLIA 378 (380)
Q Consensus 357 ~~-----~Ld~aLlrRF~~~I~~plPd 378 (380)
.+ .++|++++||...++||.++
T Consensus 153 ~~~~~~~~~~p~L~sRf~~~i~f~~~~ 179 (261)
T TIGR02881 153 DEMDYFLSLNPGLRSRFPISIDFPDYT 179 (261)
T ss_pred chhHHHHhcChHHHhccceEEEECCCC
Confidence 32 26789999998888888665
No 40
>CHL00181 cbbX CbbX; Provisional
Probab=99.75 E-value=7.9e-18 Score=163.65 Aligned_cols=161 Identities=22% Similarity=0.287 Sum_probs=118.9
Q ss_pred cccccchHHHHHHHHHHHhccccCccccc--cc--CCCCceEEEEcCCCCcHHHHHHHHHHhc-------CCeEEEEecc
Q 016911 208 WESIKGLENAKRLLKEAVVMPIKYPKYFT--GL--LSPWKGILLFGPPGTGKTMLAKAVATEC-------KTTFFNISAS 276 (380)
Q Consensus 208 ~~~l~Gl~~~k~~L~~~l~~~l~~~~~~~--~~--~~~~~~vLL~GppGtGKT~la~ala~~l-------~~~~v~v~~s 276 (380)
+++++|++++|+++.+.+... ...+... +. ..++.+++|+||||||||++|+++|..+ ..+++.++++
T Consensus 22 ~~~l~Gl~~vK~~i~e~~~~~-~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~ 100 (287)
T CHL00181 22 DEELVGLAPVKTRIREIAALL-LIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRD 100 (287)
T ss_pred HHhcCCcHHHHHHHHHHHHHH-HHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHH
Confidence 358999999999998876542 2222222 11 2345679999999999999999999876 2468999999
Q ss_pred hhhhhhccchHHHHHHHHHHHHhcCCeEEEEcCcchhhhhccccchhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCC
Q 016911 277 SVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNL 356 (380)
Q Consensus 277 ~l~~~~~ge~e~~l~~lf~~A~~~~p~ILfIDEiD~l~~~~~~~~~~~~~~~~i~~~Ll~~ldgl~~~~~~VlVIatTN~ 356 (380)
++.+.+.|+++...+.+++.+. ++||||||+|.+...+. ..+.....+..|+..|+. ....++||++++.
T Consensus 101 ~l~~~~~g~~~~~~~~~l~~a~---ggVLfIDE~~~l~~~~~----~~~~~~e~~~~L~~~me~---~~~~~~vI~ag~~ 170 (287)
T CHL00181 101 DLVGQYIGHTAPKTKEVLKKAM---GGVLFIDEAYYLYKPDN----ERDYGSEAIEILLQVMEN---QRDDLVVIFAGYK 170 (287)
T ss_pred HHHHHHhccchHHHHHHHHHcc---CCEEEEEccchhccCCC----ccchHHHHHHHHHHHHhc---CCCCEEEEEeCCc
Confidence 9999999988877777777765 57999999999864322 122345677788888853 3345777777754
Q ss_pred CC-----CchHHHHhcccceeEecCCCC
Q 016911 357 PW-----ELDAAMLRRLEKRVSFSLIAL 379 (380)
Q Consensus 357 ~~-----~Ld~aLlrRF~~~I~~plPd~ 379 (380)
.. .++|++++||+..++|+.++.
T Consensus 171 ~~~~~~~~~np~L~sR~~~~i~F~~~t~ 198 (287)
T CHL00181 171 DRMDKFYESNPGLSSRIANHVDFPDYTP 198 (287)
T ss_pred HHHHHHHhcCHHHHHhCCceEEcCCcCH
Confidence 32 245999999999999998874
No 41
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.74 E-value=1.8e-17 Score=160.97 Aligned_cols=158 Identities=20% Similarity=0.272 Sum_probs=118.1
Q ss_pred cccchHHHHHHHHHHHhccccCcccccc-c---CCCCceEEEEcCCCCcHHHHHHHHHHhc-------CCeEEEEecchh
Q 016911 210 SIKGLENAKRLLKEAVVMPIKYPKYFTG-L---LSPWKGILLFGPPGTGKTMLAKAVATEC-------KTTFFNISASSV 278 (380)
Q Consensus 210 ~l~Gl~~~k~~L~~~l~~~l~~~~~~~~-~---~~~~~~vLL~GppGtGKT~la~ala~~l-------~~~~v~v~~s~l 278 (380)
+++|++++|+++.+.+.. +..++.... . ..++.+++|+||||||||++|+++|..+ ..+++.++++++
T Consensus 23 ~l~Gl~~vk~~i~e~~~~-~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~~l 101 (284)
T TIGR02880 23 ELIGLKPVKTRIREIAAL-LLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDDL 101 (284)
T ss_pred hccCHHHHHHHHHHHHHH-HHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHHHH
Confidence 689999999999887655 223322221 1 2356799999999999999999998876 237999999999
Q ss_pred hhhhccchHHHHHHHHHHHHhcCCeEEEEcCcchhhhhccccchhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCCC-
Q 016911 279 VSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLP- 357 (380)
Q Consensus 279 ~~~~~ge~e~~l~~lf~~A~~~~p~ILfIDEiD~l~~~~~~~~~~~~~~~~i~~~Ll~~ldgl~~~~~~VlVIatTN~~- 357 (380)
.+.+.|+++..++.+++.+. ++||||||++.+.+.++. ......+++.|+..|+. ....++||++++..
T Consensus 102 ~~~~~g~~~~~~~~~~~~a~---~gvL~iDEi~~L~~~~~~----~~~~~~~~~~Ll~~le~---~~~~~~vI~a~~~~~ 171 (284)
T TIGR02880 102 VGQYIGHTAPKTKEILKRAM---GGVLFIDEAYYLYRPDNE----RDYGQEAIEILLQVMEN---QRDDLVVILAGYKDR 171 (284)
T ss_pred hHhhcccchHHHHHHHHHcc---CcEEEEechhhhccCCCc----cchHHHHHHHHHHHHhc---CCCCEEEEEeCCcHH
Confidence 99999988888888888775 589999999998543221 22345566778888853 33557788777643
Q ss_pred -C---CchHHHHhcccceeEecCCC
Q 016911 358 -W---ELDAAMLRRLEKRVSFSLIA 378 (380)
Q Consensus 358 -~---~Ld~aLlrRF~~~I~~plPd 378 (380)
+ .++|++++||...++||.++
T Consensus 172 ~~~~~~~np~L~sR~~~~i~fp~l~ 196 (284)
T TIGR02880 172 MDSFFESNPGFSSRVAHHVDFPDYS 196 (284)
T ss_pred HHHHHhhCHHHHhhCCcEEEeCCcC
Confidence 2 25799999999999998876
No 42
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.73 E-value=4.8e-17 Score=161.03 Aligned_cols=167 Identities=26% Similarity=0.418 Sum_probs=126.7
Q ss_pred CCCccccccchHHHHHHHHHHHhccccCcccccccCCCCceEEEEcCCCCcHHHHHHHHHHhcCCeEEEEecchhhhhhc
Q 016911 204 PDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWR 283 (380)
Q Consensus 204 p~~~~~~l~Gl~~~k~~L~~~l~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~l~~~~v~v~~s~l~~~~~ 283 (380)
...++++++-.....+.+.......-. .+ .-..|.+++|+|||||||||++|+.||...|..|-.+.+.++. ..-
T Consensus 350 gk~pl~~ViL~psLe~Rie~lA~aTaN-TK---~h~apfRNilfyGPPGTGKTm~ArelAr~SGlDYA~mTGGDVA-PlG 424 (630)
T KOG0742|consen 350 GKDPLEGVILHPSLEKRIEDLAIATAN-TK---KHQAPFRNILFYGPPGTGKTMFARELARHSGLDYAIMTGGDVA-PLG 424 (630)
T ss_pred CCCCcCCeecCHHHHHHHHHHHHHhcc-cc---cccchhhheeeeCCCCCCchHHHHHHHhhcCCceehhcCCCcc-ccc
Confidence 444577777777766666654322111 11 1135678999999999999999999999999999888887753 333
Q ss_pred cchHHHHHHHHHHHHhcCC-eEEEEcCcchhhhhccccchhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCCCCCchH
Q 016911 284 GDSEKLIKVLFELARHHAP-STIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDA 362 (380)
Q Consensus 284 ge~e~~l~~lf~~A~~~~p-~ILfIDEiD~l~~~~~~~~~~~~~~~~i~~~Ll~~ldgl~~~~~~VlVIatTN~~~~Ld~ 362 (380)
.+.-..++.+|+.++.... -+|||||+|.+..++... ...+..+..++.||... ....+.++++.+||+|.++|.
T Consensus 425 ~qaVTkiH~lFDWakkS~rGLllFIDEADAFLceRnkt-ymSEaqRsaLNAlLfRT---GdqSrdivLvlAtNrpgdlDs 500 (630)
T KOG0742|consen 425 AQAVTKIHKLFDWAKKSRRGLLLFIDEADAFLCERNKT-YMSEAQRSALNALLFRT---GDQSRDIVLVLATNRPGDLDS 500 (630)
T ss_pred hHHHHHHHHHHHHHhhcccceEEEehhhHHHHHHhchh-hhcHHHHHHHHHHHHHh---cccccceEEEeccCCccchhH
Confidence 4556778999999987654 478999999999887542 33445677788888765 334566888899999999999
Q ss_pred HHHhcccceeEecCCCC
Q 016911 363 AMLRRLEKRVSFSLIAL 379 (380)
Q Consensus 363 aLlrRF~~~I~~plPd~ 379 (380)
++-+||+.+++||||..
T Consensus 501 AV~DRide~veFpLPGe 517 (630)
T KOG0742|consen 501 AVNDRIDEVVEFPLPGE 517 (630)
T ss_pred HHHhhhhheeecCCCCh
Confidence 99999999999999975
No 43
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.73 E-value=9.2e-18 Score=162.05 Aligned_cols=171 Identities=32% Similarity=0.448 Sum_probs=132.8
Q ss_pred cccccchHHHHHHHHHHHhccccCc--ccccccCCCCceEEEEcCCCCcHHHHHHHHHHhc---------CCeEEEEecc
Q 016911 208 WESIKGLENAKRLLKEAVVMPIKYP--KYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---------KTTFFNISAS 276 (380)
Q Consensus 208 ~~~l~Gl~~~k~~L~~~l~~~l~~~--~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~l---------~~~~v~v~~s 276 (380)
|+.++--...|+.+.+.....+... +.-..++.-.+-+|++||||||||+|++++|+.+ ...++++++.
T Consensus 141 WEsLiyds~lK~~ll~Ya~s~l~fsek~vntnlIt~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinsh 220 (423)
T KOG0744|consen 141 WESLIYDSNLKERLLSYAASALLFSEKKVNTNLITWNRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSH 220 (423)
T ss_pred HHHHhhcccHHHHHHHHHHHHHHHHhcCCCCceeeeeeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEehh
Confidence 7777777777777776554433222 1122335555789999999999999999999998 4467899999
Q ss_pred hhhhhhccchHHHHHHHHHHHHhc---CCe--EEEEcCcchhhhhcccc--chhhHHHHHHHHHHHHHhcCCccCCCcEE
Q 016911 277 SVVSKWRGDSEKLIKVLFELARHH---APS--TIFLDEIDAIISQRGEA--RSEHEASRRLKTELLIQMDGLTQSDELVF 349 (380)
Q Consensus 277 ~l~~~~~ge~e~~l~~lf~~A~~~---~p~--ILfIDEiD~l~~~~~~~--~~~~~~~~~i~~~Ll~~ldgl~~~~~~Vl 349 (380)
.++++|.+++.+.+..+|...... .++ .++|||++++...|... +.+....-++++.++.++|.+... .+|+
T Consensus 221 sLFSKWFsESgKlV~kmF~kI~ELv~d~~~lVfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK~~-~Nvl 299 (423)
T KOG0744|consen 221 SLFSKWFSESGKLVAKMFQKIQELVEDRGNLVFVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLKRY-PNVL 299 (423)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHhCCCcEEEEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhccC-CCEE
Confidence 999999999999999998876532 222 46699999998876322 223333567899999999998754 4588
Q ss_pred EEEEeCCCCCchHHHHhcccceeEecCCCC
Q 016911 350 VLAATNLPWELDAAMLRRLEKRVSFSLIAL 379 (380)
Q Consensus 350 VIatTN~~~~Ld~aLlrRF~~~I~~plPd~ 379 (380)
+++|+|-.+.+|.|+.+|-|.+.++..|+.
T Consensus 300 iL~TSNl~~siD~AfVDRADi~~yVG~Pt~ 329 (423)
T KOG0744|consen 300 ILATSNLTDSIDVAFVDRADIVFYVGPPTA 329 (423)
T ss_pred EEeccchHHHHHHHhhhHhhheeecCCccH
Confidence 999999999999999999999999999985
No 44
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.72 E-value=1.7e-17 Score=166.57 Aligned_cols=163 Identities=24% Similarity=0.402 Sum_probs=130.7
Q ss_pred CccccccchHHHHHHHHHHHhccccCcccccccCCCC-ceEEEEcCCCCcHHHHHHHHHHhcCCeEEEEecchhhhhhcc
Q 016911 206 VKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPW-KGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRG 284 (380)
Q Consensus 206 ~~~~~l~Gl~~~k~~L~~~l~~~l~~~~~~~~~~~~~-~~vLL~GppGtGKT~la~ala~~l~~~~v~v~~s~l~~~~~g 284 (380)
.+|+.++--.+.|+.+.+.+..+.+..+++.++.+|+ +|+|||||||||||++..|+|+.++..++.++.++...
T Consensus 198 stF~TlaMd~~~K~~I~~Dl~~F~k~k~~YkrvGkawKRGYLLYGPPGTGKSS~IaAmAn~L~ydIydLeLt~v~~---- 273 (457)
T KOG0743|consen 198 STFETLAMDPDLKERIIDDLDDFIKGKDFYKRVGKAWKRGYLLYGPPGTGKSSFIAAMANYLNYDIYDLELTEVKL---- 273 (457)
T ss_pred CCccccccChhHHHHHHHHHHHHHhcchHHHhcCcchhccceeeCCCCCCHHHHHHHHHhhcCCceEEeeeccccC----
Confidence 5688999899999999999999999999999998887 78999999999999999999999999999998877532
Q ss_pred chHHHHHHHHHHHHhcCCeEEEEcCcchhhhhccccchh----h-HHHHHHHHHHHHHhcCCccCC-CcEEEEEEeCCCC
Q 016911 285 DSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSE----H-EASRRLKTELLIQMDGLTQSD-ELVFVLAATNLPW 358 (380)
Q Consensus 285 e~e~~l~~lf~~A~~~~p~ILfIDEiD~l~~~~~~~~~~----~-~~~~~i~~~Ll~~ldgl~~~~-~~VlVIatTN~~~ 358 (380)
... ++.++..+.. .+||+|+|||+-..-+...... + ......++.||+.+||++... .--+||.|||.++
T Consensus 274 -n~d-Lr~LL~~t~~--kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~E 349 (457)
T KOG0743|consen 274 -DSD-LRHLLLATPN--KSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHKE 349 (457)
T ss_pred -cHH-HHHHHHhCCC--CcEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEEEecCChh
Confidence 222 6666655443 5799999999876533221111 1 123467888999999997655 2355788999999
Q ss_pred CchHHHHh--cccceeEecC
Q 016911 359 ELDAAMLR--RLEKRVSFSL 376 (380)
Q Consensus 359 ~Ld~aLlr--RF~~~I~~pl 376 (380)
.|||||+| |.|.+|+++.
T Consensus 350 kLDPALlRpGRmDmhI~mgy 369 (457)
T KOG0743|consen 350 KLDPALLRPGRMDMHIYMGY 369 (457)
T ss_pred hcCHhhcCCCcceeEEEcCC
Confidence 99999999 9999999875
No 45
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.64 E-value=1.2e-15 Score=142.28 Aligned_cols=145 Identities=21% Similarity=0.245 Sum_probs=91.5
Q ss_pred CCCCccccccchHHHHHHHHHHHhccccCcccccccCCCCceEEEEcCCCCcHHHHHHHHHHhcCCeEEEEecchhhhhh
Q 016911 203 SPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKW 282 (380)
Q Consensus 203 ~p~~~~~~l~Gl~~~k~~L~~~l~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~l~~~~v~v~~s~l~~~~ 282 (380)
-+...+++++|++.++..++-.+...... ..+..++|||||||+||||||+.+|++++.++..++++.+..
T Consensus 18 lRP~~L~efiGQ~~l~~~l~i~i~aa~~r-------~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~sg~~i~k-- 88 (233)
T PF05496_consen 18 LRPKSLDEFIGQEHLKGNLKILIRAAKKR-------GEALDHMLFYGPPGLGKTTLARIIANELGVNFKITSGPAIEK-- 88 (233)
T ss_dssp TS-SSCCCS-S-HHHHHHHHHHHHHHHCT-------TS---EEEEESSTTSSHHHHHHHHHHHCT--EEEEECCC--S--
T ss_pred cCCCCHHHccCcHHHHhhhHHHHHHHHhc-------CCCcceEEEECCCccchhHHHHHHHhccCCCeEeccchhhhh--
Confidence 35568999999999999887655432221 134468999999999999999999999999999888755321
Q ss_pred ccchHHHHHHHHHHHHhcCCeEEEEcCcchhhhhccccchhhHHHHHHHHHHHHHhcCCcc------C---------CCc
Q 016911 283 RGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQ------S---------DEL 347 (380)
Q Consensus 283 ~ge~e~~l~~lf~~A~~~~p~ILfIDEiD~l~~~~~~~~~~~~~~~~i~~~Ll~~ldgl~~------~---------~~~ 347 (380)
. ..+..++... ..+.|||||||+.+-. .....|+..|+...- . -.+
T Consensus 89 ---~-~dl~~il~~l--~~~~ILFIDEIHRlnk-------------~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~ 149 (233)
T PF05496_consen 89 ---A-GDLAAILTNL--KEGDILFIDEIHRLNK-------------AQQEILLPAMEDGKIDIIIGKGPNARSIRINLPP 149 (233)
T ss_dssp ---C-HHHHHHHHT----TT-EEEECTCCC--H-------------HHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE---
T ss_pred ---H-HHHHHHHHhc--CCCcEEEEechhhccH-------------HHHHHHHHHhccCeEEEEeccccccceeeccCCC
Confidence 1 1122223222 2467999999999843 234456766654321 0 034
Q ss_pred EEEEEEeCCCCCchHHHHhcccceeEec
Q 016911 348 VFVLAATNLPWELDAAMLRRLEKRVSFS 375 (380)
Q Consensus 348 VlVIatTN~~~~Ld~aLlrRF~~~I~~p 375 (380)
..+|+||++...+.++|++||.....+.
T Consensus 150 FTligATTr~g~ls~pLrdRFgi~~~l~ 177 (233)
T PF05496_consen 150 FTLIGATTRAGLLSSPLRDRFGIVLRLE 177 (233)
T ss_dssp -EEEEEESSGCCTSHCCCTTSSEEEE--
T ss_pred ceEeeeeccccccchhHHhhcceecchh
Confidence 6789999999999999999998765544
No 46
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.63 E-value=2.3e-15 Score=163.31 Aligned_cols=162 Identities=21% Similarity=0.342 Sum_probs=122.8
Q ss_pred cchhhccCCCCccccccchHHHHHHHHHHHhccccCcccccccCCCCceEEEEcCCCCcHHHHHHHHHHhc---------
Q 016911 196 CRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC--------- 266 (380)
Q Consensus 196 ~~~~~~~~p~~~~~~l~Gl~~~k~~L~~~l~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~l--------- 266 (380)
+.+.......-.+++++|.+..++.+.+.+.. ....+++|+||||||||++++++|..+
T Consensus 169 ~~~l~~~~r~~~l~~~igr~~ei~~~~~~L~~------------~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l 236 (731)
T TIGR02639 169 TVDLTEKAKNGKIDPLIGREDELERTIQVLCR------------RKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENL 236 (731)
T ss_pred hhhHHHHHhcCCCCcccCcHHHHHHHHHHHhc------------CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhh
Confidence 33444444555788999999988887766533 233689999999999999999999987
Q ss_pred -CCeEEEEecchhh--hhhccchHHHHHHHHHHHHhcCCeEEEEcCcchhhhhccccchhhHHHHHHHHHHHHHhcCCcc
Q 016911 267 -KTTFFNISASSVV--SKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQ 343 (380)
Q Consensus 267 -~~~~v~v~~s~l~--~~~~ge~e~~l~~lf~~A~~~~p~ILfIDEiD~l~~~~~~~~~~~~~~~~i~~~Ll~~ldgl~~ 343 (380)
+..++.++++.+. ..|.|+.+..++.++..+....+.||||||+|.+.+.....++..+ ..+.|...+
T Consensus 237 ~~~~~~~~~~~~l~a~~~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~----~~~~L~~~l----- 307 (731)
T TIGR02639 237 KNAKIYSLDMGSLLAGTKYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMD----ASNLLKPAL----- 307 (731)
T ss_pred cCCeEEEecHHHHhhhccccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHH----HHHHHHHHH-----
Confidence 7789999998887 4688999999999999988777899999999999865432222111 222344444
Q ss_pred CCCcEEEEEEeCCCC-----CchHHHHhcccceeEecCCCC
Q 016911 344 SDELVFVLAATNLPW-----ELDAAMLRRLEKRVSFSLIAL 379 (380)
Q Consensus 344 ~~~~VlVIatTN~~~-----~Ld~aLlrRF~~~I~~plPd~ 379 (380)
.++.+.+|++||..+ ..|+++.|||. .++++.|+.
T Consensus 308 ~~g~i~~IgaTt~~e~~~~~~~d~al~rRf~-~i~v~~p~~ 347 (731)
T TIGR02639 308 SSGKLRCIGSTTYEEYKNHFEKDRALSRRFQ-KIDVGEPSI 347 (731)
T ss_pred hCCCeEEEEecCHHHHHHHhhhhHHHHHhCc-eEEeCCCCH
Confidence 245688999998643 57999999997 689999974
No 47
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.61 E-value=3.3e-15 Score=163.08 Aligned_cols=153 Identities=26% Similarity=0.280 Sum_probs=109.1
Q ss_pred ccccchHHHHHHHHHHHhccccCcccccccCCCCceEEEEcCCCCcHHHHHHHHHHhcCCeEEEEecchhh---------
Q 016911 209 ESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVV--------- 279 (380)
Q Consensus 209 ~~l~Gl~~~k~~L~~~l~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~l~~~~v~v~~s~l~--------- 279 (380)
+++.|++.+++.+.+.+....... ...+..++|+||||||||++|+++|+.++.+++.++++...
T Consensus 320 ~~~~G~~~~k~~i~~~~~~~~~~~------~~~~~~lll~GppG~GKT~lAk~iA~~l~~~~~~i~~~~~~~~~~i~g~~ 393 (775)
T TIGR00763 320 EDHYGLKKVKERILEYLAVQKLRG------KMKGPILCLVGPPGVGKTSLGKSIAKALNRKFVRFSLGGVRDEAEIRGHR 393 (775)
T ss_pred hhcCChHHHHHHHHHHHHHHHhhc------CCCCceEEEECCCCCCHHHHHHHHHHHhcCCeEEEeCCCcccHHHHcCCC
Confidence 357788998888887654332111 11334799999999999999999999999999998775432
Q ss_pred hhhccchHHHHHHHHHHHHhcCCeEEEEcCcchhhhhccccchhhHHHHHHHHHHHHHhcC-----C-------ccCCCc
Q 016911 280 SKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDG-----L-------TQSDEL 347 (380)
Q Consensus 280 ~~~~ge~e~~l~~lf~~A~~~~p~ILfIDEiD~l~~~~~~~~~~~~~~~~i~~~Ll~~ldg-----l-------~~~~~~ 347 (380)
..|.|.....+...+..+....| ||+|||||++.+..+.. ..+.|+..+|. + .....+
T Consensus 394 ~~~~g~~~g~i~~~l~~~~~~~~-villDEidk~~~~~~~~---------~~~aLl~~ld~~~~~~f~d~~~~~~~d~s~ 463 (775)
T TIGR00763 394 RTYVGAMPGRIIQGLKKAKTKNP-LFLLDEIDKIGSSFRGD---------PASALLEVLDPEQNNAFSDHYLDVPFDLSK 463 (775)
T ss_pred CceeCCCCchHHHHHHHhCcCCC-EEEEechhhcCCccCCC---------HHHHHHHhcCHHhcCccccccCCceeccCC
Confidence 24666666677777777766665 89999999997643211 12334444432 1 111246
Q ss_pred EEEEEEeCCCCCchHHHHhcccceeEecCCC
Q 016911 348 VFVLAATNLPWELDAAMLRRLEKRVSFSLIA 378 (380)
Q Consensus 348 VlVIatTN~~~~Ld~aLlrRF~~~I~~plPd 378 (380)
+++|+|||..+.+++++++||. .++|+.|+
T Consensus 464 v~~I~TtN~~~~i~~~L~~R~~-vi~~~~~~ 493 (775)
T TIGR00763 464 VIFIATANSIDTIPRPLLDRME-VIELSGYT 493 (775)
T ss_pred EEEEEecCCchhCCHHHhCCee-EEecCCCC
Confidence 8899999999999999999995 67777765
No 48
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.55 E-value=3e-14 Score=154.41 Aligned_cols=164 Identities=22% Similarity=0.323 Sum_probs=121.5
Q ss_pred hccchhhccCCCCccccccchHHHHHHHHHHHhccccCcccccccCCCCceEEEEcCCCCcHHHHHHHHHHhc-------
Q 016911 194 SLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC------- 266 (380)
Q Consensus 194 ~~~~~~~~~~p~~~~~~l~Gl~~~k~~L~~~l~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~l------- 266 (380)
.++.++......-.++.++|.++.++.+.+.+.. ....++||+||||||||++++++|...
T Consensus 171 ~~~~~l~~~a~~g~~~~liGR~~ei~~~i~iL~r------------~~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~ 238 (758)
T PRK11034 171 NFTTNLNQLARVGGIDPLIGREKELERAIQVLCR------------RRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPE 238 (758)
T ss_pred HHHHhHHHHHHcCCCCcCcCCCHHHHHHHHHHhc------------cCCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCc
Confidence 3455555555566788999999999888876643 123688999999999999999999864
Q ss_pred ---CCeEEEEecchhh--hhhccchHHHHHHHHHHHHhcCCeEEEEcCcchhhhhccccchhhHHHHHHHHHHHHHhcCC
Q 016911 267 ---KTTFFNISASSVV--SKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGL 341 (380)
Q Consensus 267 ---~~~~v~v~~s~l~--~~~~ge~e~~l~~lf~~A~~~~p~ILfIDEiD~l~~~~~~~~~~~~~~~~i~~~Ll~~ldgl 341 (380)
+..++.++...+. ..|.|+.+..++.++..+....++||||||+|.+.+.........+ +.+.|...+
T Consensus 239 ~l~~~~~~~l~~~~llaG~~~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d----~~nlLkp~L--- 311 (758)
T PRK11034 239 VMADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVD----AANLIKPLL--- 311 (758)
T ss_pred hhcCCeEEeccHHHHhcccchhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHH----HHHHHHHHH---
Confidence 5566777766665 3577889999999999888778899999999999876532222222 222233333
Q ss_pred ccCCCcEEEEEEeCCCC-----CchHHHHhcccceeEecCCCC
Q 016911 342 TQSDELVFVLAATNLPW-----ELDAAMLRRLEKRVSFSLIAL 379 (380)
Q Consensus 342 ~~~~~~VlVIatTN~~~-----~Ld~aLlrRF~~~I~~plPd~ 379 (380)
..+.+.+|++||.++ ..|++|.|||+ .+.++.|+.
T Consensus 312 --~~g~i~vIgATt~~E~~~~~~~D~AL~rRFq-~I~v~ePs~ 351 (758)
T PRK11034 312 --SSGKIRVIGSTTYQEFSNIFEKDRALARRFQ-KIDITEPSI 351 (758)
T ss_pred --hCCCeEEEecCChHHHHHHhhccHHHHhhCc-EEEeCCCCH
Confidence 245588999999865 47999999996 699999974
No 49
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.53 E-value=8.6e-14 Score=135.42 Aligned_cols=145 Identities=19% Similarity=0.238 Sum_probs=98.4
Q ss_pred ccccccchHHHHHHHHHHHhccccCcccccccCCCCceEEEEcCCCCcHHHHHHHHHHhcCCeEEEEecchhhhhhccch
Q 016911 207 KWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDS 286 (380)
Q Consensus 207 ~~~~l~Gl~~~k~~L~~~l~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~l~~~~v~v~~s~l~~~~~ge~ 286 (380)
+|++++|++..++.|...+...... ..++.+++|+||||||||++|+++|++++.++..+..+....
T Consensus 2 ~~~~~iG~~~~~~~l~~~l~~~~~~-------~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~~~~~~~~~~------ 68 (305)
T TIGR00635 2 LLAEFIGQEKVKEQLQLFIEAAKMR-------QEALDHLLLYGPPGLGKTTLAHIIANEMGVNLKITSGPALEK------ 68 (305)
T ss_pred CHHHHcCHHHHHHHHHHHHHHHHhc-------CCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeccchhcC------
Confidence 5889999999999988776432221 134468999999999999999999999988876665443211
Q ss_pred HHHHHHHHHHHHhcCCeEEEEcCcchhhhhccccchhhHHHHHHHHHHHHHhcCCc---------------cCCCcEEEE
Q 016911 287 EKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT---------------QSDELVFVL 351 (380)
Q Consensus 287 e~~l~~lf~~A~~~~p~ILfIDEiD~l~~~~~~~~~~~~~~~~i~~~Ll~~ldgl~---------------~~~~~VlVI 351 (380)
...+...+... ..+.+|||||++.+.+... ..|+..++... ....++.+|
T Consensus 69 ~~~l~~~l~~~--~~~~vl~iDEi~~l~~~~~-------------e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~li 133 (305)
T TIGR00635 69 PGDLAAILTNL--EEGDVLFIDEIHRLSPAVE-------------ELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTLV 133 (305)
T ss_pred chhHHHHHHhc--ccCCEEEEehHhhhCHHHH-------------HHhhHHHhhhheeeeeccCccccceeecCCCeEEE
Confidence 11122222222 3467999999999854311 11222221111 112337789
Q ss_pred EEeCCCCCchHHHHhcccceeEecCCCC
Q 016911 352 AATNLPWELDAAMLRRLEKRVSFSLIAL 379 (380)
Q Consensus 352 atTN~~~~Ld~aLlrRF~~~I~~plPd~ 379 (380)
++||++..+++++++||...+.++.|+.
T Consensus 134 ~~t~~~~~l~~~l~sR~~~~~~l~~l~~ 161 (305)
T TIGR00635 134 GATTRAGMLTSPLRDRFGIILRLEFYTV 161 (305)
T ss_pred EecCCccccCHHHHhhcceEEEeCCCCH
Confidence 9999999999999999988888888763
No 50
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.53 E-value=5.5e-14 Score=139.60 Aligned_cols=134 Identities=29% Similarity=0.465 Sum_probs=96.4
Q ss_pred CCCccccccchHHHHH---HHHHHHhccccCcccccccCCCCceEEEEcCCCCcHHHHHHHHHHhcCCeEEEEecchhhh
Q 016911 204 PDVKWESIKGLENAKR---LLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVS 280 (380)
Q Consensus 204 p~~~~~~l~Gl~~~k~---~L~~~l~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~l~~~~v~v~~s~l~~ 280 (380)
+..++++++|++..+. -|.+++.. ..-.+++|||||||||||||+.+|+..+.+|..+++..
T Consensus 19 RP~~lde~vGQ~HLlg~~~~lrr~v~~------------~~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv~--- 83 (436)
T COG2256 19 RPKSLDEVVGQEHLLGEGKPLRRAVEA------------GHLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAVT--- 83 (436)
T ss_pred CCCCHHHhcChHhhhCCCchHHHHHhc------------CCCceeEEECCCCCCHHHHHHHHHHhhCCceEEecccc---
Confidence 3456889999887653 23333322 23368999999999999999999999999999998754
Q ss_pred hhccchHHHHHHHHHHHHhcC----CeEEEEcCcchhhhhccccchhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEe--
Q 016911 281 KWRGDSEKLIKVLFELARHHA----PSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAAT-- 354 (380)
Q Consensus 281 ~~~ge~e~~l~~lf~~A~~~~----p~ILfIDEiD~l~~~~~~~~~~~~~~~~i~~~Ll~~ldgl~~~~~~VlVIatT-- 354 (380)
.+-+.++.+++.|+... ..|||||||+.+-..+ +..||..+ .++.+++|++|
T Consensus 84 ----~gvkdlr~i~e~a~~~~~~gr~tiLflDEIHRfnK~Q-------------QD~lLp~v-----E~G~iilIGATTE 141 (436)
T COG2256 84 ----SGVKDLREIIEEARKNRLLGRRTILFLDEIHRFNKAQ-------------QDALLPHV-----ENGTIILIGATTE 141 (436)
T ss_pred ----ccHHHHHHHHHHHHHHHhcCCceEEEEehhhhcChhh-------------hhhhhhhh-----cCCeEEEEeccCC
Confidence 34567788888885433 4799999999984322 23466666 34457777666
Q ss_pred CCCCCchHHHHhcccceeEec
Q 016911 355 NLPWELDAAMLRRLEKRVSFS 375 (380)
Q Consensus 355 N~~~~Ld~aLlrRF~~~I~~p 375 (380)
|....+.++|+||.. ++++.
T Consensus 142 NPsF~ln~ALlSR~~-vf~lk 161 (436)
T COG2256 142 NPSFELNPALLSRAR-VFELK 161 (436)
T ss_pred CCCeeecHHHhhhhh-eeeee
Confidence 555689999999974 34443
No 51
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.52 E-value=8.9e-14 Score=153.14 Aligned_cols=162 Identities=20% Similarity=0.314 Sum_probs=120.9
Q ss_pred ccchhhccCCCCccccccchHHHHHHHHHHHhccccCcccccccCCCCceEEEEcCCCCcHHHHHHHHHHhc--------
Q 016911 195 LCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC-------- 266 (380)
Q Consensus 195 ~~~~~~~~~p~~~~~~l~Gl~~~k~~L~~~l~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~l-------- 266 (380)
++.+.......-.++.++|.+..++.+.+.+.. ....+++|+||||||||++++++|..+
T Consensus 164 ~~~~l~~~~r~~~l~~vigr~~ei~~~i~iL~r------------~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~ 231 (857)
T PRK10865 164 YTIDLTERAEQGKLDPVIGRDEEIRRTIQVLQR------------RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEG 231 (857)
T ss_pred HhhhHHHHHhcCCCCcCCCCHHHHHHHHHHHhc------------CCcCceEEECCCCCCHHHHHHHHHHHhhcCCCchh
Confidence 445555555666789999999988877776533 233689999999999999999999987
Q ss_pred --CCeEEEEecchhh--hhhccchHHHHHHHHHHHH-hcCCeEEEEcCcchhhhhccccchhhHHHHHHHHHHHHHhcCC
Q 016911 267 --KTTFFNISASSVV--SKWRGDSEKLIKVLFELAR-HHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGL 341 (380)
Q Consensus 267 --~~~~v~v~~s~l~--~~~~ge~e~~l~~lf~~A~-~~~p~ILfIDEiD~l~~~~~~~~~~~~~~~~i~~~Ll~~ldgl 341 (380)
+.+++.++.+.+. ..+.|+.+..++.++.... ...+.||||||++.+.+..... ...+. .+.|...+
T Consensus 232 l~~~~~~~l~l~~l~ag~~~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~-~~~d~----~~~lkp~l--- 303 (857)
T PRK10865 232 LKGRRVLALDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKAD-GAMDA----GNMLKPAL--- 303 (857)
T ss_pred hCCCEEEEEehhhhhhccchhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCc-cchhH----HHHhcchh---
Confidence 6788999888876 4578899999999998754 3467899999999997654321 11221 22233332
Q ss_pred ccCCCcEEEEEEeCCCC-----CchHHHHhcccceeEecCCCC
Q 016911 342 TQSDELVFVLAATNLPW-----ELDAAMLRRLEKRVSFSLIAL 379 (380)
Q Consensus 342 ~~~~~~VlVIatTN~~~-----~Ld~aLlrRF~~~I~~plPd~ 379 (380)
..+.+.+|++|+..+ ++|+++.|||+ .+.++.|+.
T Consensus 304 --~~g~l~~IgaTt~~e~r~~~~~d~al~rRf~-~i~v~eP~~ 343 (857)
T PRK10865 304 --ARGELHCVGATTLDEYRQYIEKDAALERRFQ-KVFVAEPSV 343 (857)
T ss_pred --hcCCCeEEEcCCCHHHHHHhhhcHHHHhhCC-EEEeCCCCH
Confidence 345688999998876 48999999997 578888864
No 52
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.51 E-value=1.5e-13 Score=135.77 Aligned_cols=148 Identities=20% Similarity=0.232 Sum_probs=101.5
Q ss_pred CCCccccccchHHHHHHHHHHHhccccCcccccccCCCCceEEEEcCCCCcHHHHHHHHHHhcCCeEEEEecchhhhhhc
Q 016911 204 PDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWR 283 (380)
Q Consensus 204 p~~~~~~l~Gl~~~k~~L~~~l~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~l~~~~v~v~~s~l~~~~~ 283 (380)
+...|++++|.++.++.+...+...... ..+..+++|+||||+|||++|+++|++++..+..++...+.
T Consensus 20 rP~~~~~~vG~~~~~~~l~~~l~~~~~~-------~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~~~~~~~~~---- 88 (328)
T PRK00080 20 RPKSLDEFIGQEKVKENLKIFIEAAKKR-------GEALDHVLLYGPPGLGKTTLANIIANEMGVNIRITSGPALE---- 88 (328)
T ss_pred CcCCHHHhcCcHHHHHHHHHHHHHHHhc-------CCCCCcEEEECCCCccHHHHHHHHHHHhCCCeEEEeccccc----
Confidence 4457999999999999988766432111 13557899999999999999999999999888776655331
Q ss_pred cchHHHHHHHHHHHHhcCCeEEEEcCcchhhhhccccchhhHHHHHHHHHHHHHhcCCc---------------cCCCcE
Q 016911 284 GDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT---------------QSDELV 348 (380)
Q Consensus 284 ge~e~~l~~lf~~A~~~~p~ILfIDEiD~l~~~~~~~~~~~~~~~~i~~~Ll~~ldgl~---------------~~~~~V 348 (380)
....+..++... ..++||||||+|.+..... +.+...++... ..-.++
T Consensus 89 --~~~~l~~~l~~l--~~~~vl~IDEi~~l~~~~~-------------e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~~~ 151 (328)
T PRK00080 89 --KPGDLAAILTNL--EEGDVLFIDEIHRLSPVVE-------------EILYPAMEDFRLDIMIGKGPAARSIRLDLPPF 151 (328)
T ss_pred --ChHHHHHHHHhc--ccCCEEEEecHhhcchHHH-------------HHHHHHHHhcceeeeeccCccccceeecCCCc
Confidence 112233333332 3468999999999853211 11222222110 011236
Q ss_pred EEEEEeCCCCCchHHHHhcccceeEecCCCC
Q 016911 349 FVLAATNLPWELDAAMLRRLEKRVSFSLIAL 379 (380)
Q Consensus 349 lVIatTN~~~~Ld~aLlrRF~~~I~~plPd~ 379 (380)
.+|++||++..+++++++||...+.++.|+.
T Consensus 152 ~li~at~~~~~l~~~L~sRf~~~~~l~~~~~ 182 (328)
T PRK00080 152 TLIGATTRAGLLTSPLRDRFGIVQRLEFYTV 182 (328)
T ss_pred eEEeecCCcccCCHHHHHhcCeeeecCCCCH
Confidence 7899999999999999999988888888763
No 53
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.51 E-value=1.2e-13 Score=151.83 Aligned_cols=162 Identities=19% Similarity=0.291 Sum_probs=119.0
Q ss_pred ccchhhccCCCCccccccchHHHHHHHHHHHhccccCcccccccCCCCceEEEEcCCCCcHHHHHHHHHHhc--------
Q 016911 195 LCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC-------- 266 (380)
Q Consensus 195 ~~~~~~~~~p~~~~~~l~Gl~~~k~~L~~~l~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~l-------- 266 (380)
++.+.....+.-.+++++|.+..++.+.+.+.. +...+++|+||||||||++++.+|..+
T Consensus 173 ~~~~L~~~~r~~~ld~~iGr~~ei~~~i~~l~r------------~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~ 240 (852)
T TIGR03345 173 YTTDLTAQAREGKIDPVLGRDDEIRQMIDILLR------------RRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPA 240 (852)
T ss_pred HhhhHHHHhcCCCCCcccCCHHHHHHHHHHHhc------------CCcCceeEECCCCCCHHHHHHHHHHHHhhCCCCcc
Confidence 344444445666789999999987777765533 233689999999999999999999876
Q ss_pred --CCeEEEEecchhhh--hhccchHHHHHHHHHHHHh-cCCeEEEEcCcchhhhhccccchhhHHHHHHHHHHHHHhcCC
Q 016911 267 --KTTFFNISASSVVS--KWRGDSEKLIKVLFELARH-HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGL 341 (380)
Q Consensus 267 --~~~~v~v~~s~l~~--~~~ge~e~~l~~lf~~A~~-~~p~ILfIDEiD~l~~~~~~~~~~~~~~~~i~~~Ll~~ldgl 341 (380)
+.+++.++.+.+.. .+.|+.+..++.++..+.. ..+.||||||++.+.+.....+ ..+ ..+.|...+
T Consensus 241 l~~~~i~~l~l~~l~ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~-~~d----~~n~Lkp~l--- 312 (852)
T TIGR03345 241 LRNVRLLSLDLGLLQAGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAG-QGD----AANLLKPAL--- 312 (852)
T ss_pred ccCCeEEEeehhhhhcccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccc-ccc----HHHHhhHHh---
Confidence 35678888877763 5789999999999998864 4578999999999986543211 111 112343433
Q ss_pred ccCCCcEEEEEEeCCCC-----CchHHHHhcccceeEecCCCC
Q 016911 342 TQSDELVFVLAATNLPW-----ELDAAMLRRLEKRVSFSLIAL 379 (380)
Q Consensus 342 ~~~~~~VlVIatTN~~~-----~Ld~aLlrRF~~~I~~plPd~ 379 (380)
..+.+.+|+||+..+ .+|++|.|||. .+.++.|+.
T Consensus 313 --~~G~l~~IgaTT~~e~~~~~~~d~AL~rRf~-~i~v~eps~ 352 (852)
T TIGR03345 313 --ARGELRTIAATTWAEYKKYFEKDPALTRRFQ-VVKVEEPDE 352 (852)
T ss_pred --hCCCeEEEEecCHHHHhhhhhccHHHHHhCe-EEEeCCCCH
Confidence 345688999998643 48999999996 789999874
No 54
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.50 E-value=9.1e-14 Score=152.70 Aligned_cols=162 Identities=19% Similarity=0.299 Sum_probs=122.8
Q ss_pred hccchhhccCCCCccccccchHHHHHHHHHHHhccccCcccccccCCCCceEEEEcCCCCcHHHHHHHHHHhc-------
Q 016911 194 SLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC------- 266 (380)
Q Consensus 194 ~~~~~~~~~~p~~~~~~l~Gl~~~k~~L~~~l~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~l------- 266 (380)
.++.++......-.++.++|.++.++.+.+.+.. ....+++|+||||||||++++++|..+
T Consensus 164 ~~~~~l~~~a~~~~~~~~igr~~ei~~~~~~L~r------------~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~ 231 (821)
T CHL00095 164 EFGTNLTKEAIDGNLDPVIGREKEIERVIQILGR------------RTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPD 231 (821)
T ss_pred HHHHHHHHHHHcCCCCCCCCcHHHHHHHHHHHcc------------cccCCeEEECCCCCCHHHHHHHHHHHHHhCCCCh
Confidence 3455555555666789999999999999887643 234689999999999999999999976
Q ss_pred ---CCeEEEEecchhh--hhhccchHHHHHHHHHHHHhcCCeEEEEcCcchhhhhccccchhhHHHHHHHHHHHHHhcCC
Q 016911 267 ---KTTFFNISASSVV--SKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGL 341 (380)
Q Consensus 267 ---~~~~v~v~~s~l~--~~~~ge~e~~l~~lf~~A~~~~p~ILfIDEiD~l~~~~~~~~~~~~~~~~i~~~Ll~~ldgl 341 (380)
+.+++.++.+.+. ..|.|+.+.+++.++..+....+.||||||++.+.+..+..+. .+ +.+.|...+
T Consensus 232 ~l~~~~i~~l~~~~l~ag~~~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~-~~----~a~lLkp~l--- 303 (821)
T CHL00095 232 ILEDKLVITLDIGLLLAGTKYRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGA-ID----AANILKPAL--- 303 (821)
T ss_pred hhcCCeEEEeeHHHHhccCCCccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCc-cc----HHHHhHHHH---
Confidence 4789999998876 4678999999999999998777899999999999865432111 11 222233333
Q ss_pred ccCCCcEEEEEEeCCCC-----CchHHHHhcccceeEecCCC
Q 016911 342 TQSDELVFVLAATNLPW-----ELDAAMLRRLEKRVSFSLIA 378 (380)
Q Consensus 342 ~~~~~~VlVIatTN~~~-----~Ld~aLlrRF~~~I~~plPd 378 (380)
..+.+.+|++|+..+ ..|+++.+||.. +.++.|+
T Consensus 304 --~rg~l~~IgaTt~~ey~~~ie~D~aL~rRf~~-I~v~ep~ 342 (821)
T CHL00095 304 --ARGELQCIGATTLDEYRKHIEKDPALERRFQP-VYVGEPS 342 (821)
T ss_pred --hCCCcEEEEeCCHHHHHHHHhcCHHHHhcceE-EecCCCC
Confidence 244578899998764 478999999964 6777776
No 55
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=99.50 E-value=1.2e-13 Score=144.63 Aligned_cols=146 Identities=24% Similarity=0.335 Sum_probs=108.4
Q ss_pred ccccchHHHHHHHHHHHhccccCcccccccCCCCceEEEEcCCCCcHHHHHHHHHHhcCCeEEEEecchhh---------
Q 016911 209 ESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVV--------- 279 (380)
Q Consensus 209 ~~l~Gl~~~k~~L~~~l~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~l~~~~v~v~~s~l~--------- 279 (380)
++..|++++|+.+.+.+.--... .-..++-++|+||||+|||++++++|..+|..|+.++...+.
T Consensus 411 eDHYgm~dVKeRILEfiAV~kLr------gs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfRfSvGG~tDvAeIkGHR 484 (906)
T KOG2004|consen 411 EDHYGMEDVKERILEFIAVGKLR------GSVQGKILCFVGPPGVGKTSIAKSIARALNRKFFRFSVGGMTDVAEIKGHR 484 (906)
T ss_pred ccccchHHHHHHHHHHHHHHhhc------ccCCCcEEEEeCCCCCCcccHHHHHHHHhCCceEEEeccccccHHhhcccc
Confidence 46788999999888876431111 123456789999999999999999999999999998876553
Q ss_pred hhhccchHHHHHHHHHHHHhcCCeEEEEcCcchhhhhccccchhhHHHHHHHHHHHHHhcC------------CccCCCc
Q 016911 280 SKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDG------------LTQSDEL 347 (380)
Q Consensus 280 ~~~~ge~e~~l~~lf~~A~~~~p~ILfIDEiD~l~~~~~~~~~~~~~~~~i~~~Ll~~ldg------------l~~~~~~ 347 (380)
..|+|.+..++-+.+.......| +++|||+|+++...++ +.. ..||..+|- +.-.=..
T Consensus 485 RTYVGAMPGkiIq~LK~v~t~NP-liLiDEvDKlG~g~qG--DPa-------sALLElLDPEQNanFlDHYLdVp~DLSk 554 (906)
T KOG2004|consen 485 RTYVGAMPGKIIQCLKKVKTENP-LILIDEVDKLGSGHQG--DPA-------SALLELLDPEQNANFLDHYLDVPVDLSK 554 (906)
T ss_pred eeeeccCChHHHHHHHhhCCCCc-eEEeehhhhhCCCCCC--ChH-------HHHHHhcChhhccchhhhccccccchhh
Confidence 23889888888888888888877 9999999999843322 111 234444432 1112246
Q ss_pred EEEEEEeCCCCCchHHHHhcccc
Q 016911 348 VFVLAATNLPWELDAAMLRRLEK 370 (380)
Q Consensus 348 VlVIatTN~~~~Ld~aLlrRF~~ 370 (380)
|++|||+|..+.++++|++|+..
T Consensus 555 VLFicTAN~idtIP~pLlDRMEv 577 (906)
T KOG2004|consen 555 VLFICTANVIDTIPPPLLDRMEV 577 (906)
T ss_pred eEEEEeccccccCChhhhhhhhe
Confidence 99999999999999999999853
No 56
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.50 E-value=1.2e-13 Score=144.98 Aligned_cols=146 Identities=28% Similarity=0.297 Sum_probs=109.2
Q ss_pred ccccchHHHHHHHHHHHhccccCcccccccCCCCceEEEEcCCCCcHHHHHHHHHHhcCCeEEEEecchhh---------
Q 016911 209 ESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVV--------- 279 (380)
Q Consensus 209 ~~l~Gl~~~k~~L~~~l~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~l~~~~v~v~~s~l~--------- 279 (380)
.+..|++++|+.+.+.+.-...... ..+.-++|+||||+|||+|++++|..++..|+.++...+.
T Consensus 323 ~dHYGLekVKeRIlEyLAV~~l~~~------~kGpILcLVGPPGVGKTSLgkSIA~al~RkfvR~sLGGvrDEAEIRGHR 396 (782)
T COG0466 323 KDHYGLEKVKERILEYLAVQKLTKK------LKGPILCLVGPPGVGKTSLGKSIAKALGRKFVRISLGGVRDEAEIRGHR 396 (782)
T ss_pred ccccCchhHHHHHHHHHHHHHHhcc------CCCcEEEEECCCCCCchhHHHHHHHHhCCCEEEEecCccccHHHhcccc
Confidence 4667899999988876644322211 2335688999999999999999999999999999886543
Q ss_pred hhhccchHHHHHHHHHHHHhcCCeEEEEcCcchhhhhccccchhhHHHHHHHHHHHHHhcCCcc------------CCCc
Q 016911 280 SKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQ------------SDEL 347 (380)
Q Consensus 280 ~~~~ge~e~~l~~lf~~A~~~~p~ILfIDEiD~l~~~~~~~~~~~~~~~~i~~~Ll~~ldgl~~------------~~~~ 347 (380)
..|+|....++-+-...|....| +++|||||++..+-.+. .. +.||.-+|--++ .=.+
T Consensus 397 RTYIGamPGrIiQ~mkka~~~NP-v~LLDEIDKm~ss~rGD--Pa-------SALLEVLDPEQN~~F~DhYLev~yDLS~ 466 (782)
T COG0466 397 RTYIGAMPGKIIQGMKKAGVKNP-VFLLDEIDKMGSSFRGD--PA-------SALLEVLDPEQNNTFSDHYLEVPYDLSK 466 (782)
T ss_pred ccccccCChHHHHHHHHhCCcCC-eEEeechhhccCCCCCC--hH-------HHHHhhcCHhhcCchhhccccCccchhh
Confidence 23889998888888889988888 99999999997654321 11 234444442111 1145
Q ss_pred EEEEEEeCCCCCchHHHHhcccc
Q 016911 348 VFVLAATNLPWELDAAMLRRLEK 370 (380)
Q Consensus 348 VlVIatTN~~~~Ld~aLlrRF~~ 370 (380)
|++|+|+|..+.++.+|++|...
T Consensus 467 VmFiaTANsl~tIP~PLlDRMEi 489 (782)
T COG0466 467 VMFIATANSLDTIPAPLLDRMEV 489 (782)
T ss_pred eEEEeecCccccCChHHhcceee
Confidence 99999999999999999999853
No 57
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.49 E-value=1.2e-13 Score=131.85 Aligned_cols=146 Identities=21% Similarity=0.251 Sum_probs=105.1
Q ss_pred CCCCccccccchHHHHHHHHHHHhccccCcccccccCCCCceEEEEcCCCCcHHHHHHHHHHhcCCeEEEEecchhhhhh
Q 016911 203 SPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKW 282 (380)
Q Consensus 203 ~p~~~~~~l~Gl~~~k~~L~~~l~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~l~~~~v~v~~s~l~~~~ 282 (380)
-+...|++.+|++++|+++.-.+....... ...-|+||+||||.||||||..+|++++.++...++..+..
T Consensus 20 lRP~~l~efiGQ~~vk~~L~ifI~AAk~r~-------e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k~tsGp~leK-- 90 (332)
T COG2255 20 LRPKTLDEFIGQEKVKEQLQIFIKAAKKRG-------EALDHVLLFGPPGLGKTTLAHIIANELGVNLKITSGPALEK-- 90 (332)
T ss_pred cCcccHHHhcChHHHHHHHHHHHHHHHhcC-------CCcCeEEeeCCCCCcHHHHHHHHHHHhcCCeEecccccccC--
Confidence 356679999999999999987665543332 34469999999999999999999999999998887766522
Q ss_pred ccchHHHHHHHHHHHHhcCCeEEEEcCcchhhhhccccchhhHHHHHHHHHHHHHhcCCcc---------------CCCc
Q 016911 283 RGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQ---------------SDEL 347 (380)
Q Consensus 283 ~ge~e~~l~~lf~~A~~~~p~ILfIDEiD~l~~~~~~~~~~~~~~~~i~~~Ll~~ldgl~~---------------~~~~ 347 (380)
..-+-.++.. -..++|||||||+.+.+. +...|+..|+.+.- .=.+
T Consensus 91 ----~gDlaaiLt~--Le~~DVLFIDEIHrl~~~-------------vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLpp 151 (332)
T COG2255 91 ----PGDLAAILTN--LEEGDVLFIDEIHRLSPA-------------VEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPP 151 (332)
T ss_pred ----hhhHHHHHhc--CCcCCeEEEehhhhcChh-------------HHHHhhhhhhheeEEEEEccCCccceEeccCCC
Confidence 1122222222 334689999999998543 23335555543321 1134
Q ss_pred EEEEEEeCCCCCchHHHHhcccceeEecC
Q 016911 348 VFVLAATNLPWELDAAMLRRLEKRVSFSL 376 (380)
Q Consensus 348 VlVIatTN~~~~Ld~aLlrRF~~~I~~pl 376 (380)
..+|++|.+...+...|++||.....+..
T Consensus 152 FTLIGATTr~G~lt~PLrdRFGi~~rlef 180 (332)
T COG2255 152 FTLIGATTRAGMLTNPLRDRFGIIQRLEF 180 (332)
T ss_pred eeEeeeccccccccchhHHhcCCeeeeec
Confidence 67899999999999999999987766654
No 58
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=99.47 E-value=1.5e-12 Score=109.71 Aligned_cols=122 Identities=39% Similarity=0.608 Sum_probs=82.6
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHhc---CCeEEEEecchhhhhhccchHHH---HHHHHHHHHhcCCeEEEEcCcchhh
Q 016911 241 PWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKWRGDSEKL---IKVLFELARHHAPSTIFLDEIDAII 314 (380)
Q Consensus 241 ~~~~vLL~GppGtGKT~la~ala~~l---~~~~v~v~~s~l~~~~~ge~e~~---l~~lf~~A~~~~p~ILfIDEiD~l~ 314 (380)
...+++++||||+|||++++.+++.+ +.+++.+++.............. ............+.+|++||++.+.
T Consensus 18 ~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lilDe~~~~~ 97 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHFLVRLLFELAEKAKPGVLFIDEIDSLS 97 (151)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhhhHHHHHhhhhhHhHHHHhhccCCCeEEEEeChhhhh
Confidence 45789999999999999999999998 88899999887655433221111 1122233445567899999999873
Q ss_pred hhccccchhhHHHHHHHHHHHHHhcCCcc---CCCcEEEEEEeCCCC--CchHHHHhcccceeEec
Q 016911 315 SQRGEARSEHEASRRLKTELLIQMDGLTQ---SDELVFVLAATNLPW--ELDAAMLRRLEKRVSFS 375 (380)
Q Consensus 315 ~~~~~~~~~~~~~~~i~~~Ll~~ldgl~~---~~~~VlVIatTN~~~--~Ld~aLlrRF~~~I~~p 375 (380)
.. ....++..+..... ....+.+|+++|... .+++.+.+||+..+.++
T Consensus 98 ~~-------------~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~r~~~~i~~~ 150 (151)
T cd00009 98 RG-------------AQNALLRVLETLNDLRIDRENVRVIGATNRPLLGDLDRALYDRLDIRIVIP 150 (151)
T ss_pred HH-------------HHHHHHHHHHhcCceeccCCCeEEEEecCccccCCcChhHHhhhccEeecC
Confidence 21 11223333332222 135578888998877 68889999998777665
No 59
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.46 E-value=5e-13 Score=147.40 Aligned_cols=163 Identities=20% Similarity=0.334 Sum_probs=120.1
Q ss_pred hccchhhccCCCCccccccchHHHHHHHHHHHhccccCcccccccCCCCceEEEEcCCCCcHHHHHHHHHHhc-------
Q 016911 194 SLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC------- 266 (380)
Q Consensus 194 ~~~~~~~~~~p~~~~~~l~Gl~~~k~~L~~~l~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~l------- 266 (380)
.++.+.....+.-.++.++|.+..++.+.+.+.. +...+++|+||||+|||++++++|..+
T Consensus 158 ~~~~~l~~~~~~~~~~~~igr~~ei~~~~~~l~r------------~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~ 225 (852)
T TIGR03346 158 KYARDLTERAREGKLDPVIGRDEEIRRTIQVLSR------------RTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPE 225 (852)
T ss_pred HHhhhHHHHhhCCCCCcCCCcHHHHHHHHHHHhc------------CCCCceEEEcCCCCCHHHHHHHHHHHHhccCCch
Confidence 3444555555666789999999988887776533 233688999999999999999999976
Q ss_pred ---CCeEEEEecchhh--hhhccchHHHHHHHHHHHHhc-CCeEEEEcCcchhhhhccccchhhHHHHHHHHHHHHHhcC
Q 016911 267 ---KTTFFNISASSVV--SKWRGDSEKLIKVLFELARHH-APSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDG 340 (380)
Q Consensus 267 ---~~~~v~v~~s~l~--~~~~ge~e~~l~~lf~~A~~~-~p~ILfIDEiD~l~~~~~~~~~~~~~~~~i~~~Ll~~ldg 340 (380)
+.+++.++.+.+. ..|.|+.+..++.++..+... .+.||||||++.+.+.....+ ..+ ..+.|...+
T Consensus 226 ~l~~~~~~~l~~~~l~a~~~~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~-~~d----~~~~Lk~~l-- 298 (852)
T TIGR03346 226 SLKNKRLLALDMGALIAGAKYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEG-AMD----AGNMLKPAL-- 298 (852)
T ss_pred hhcCCeEEEeeHHHHhhcchhhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcc-hhH----HHHHhchhh--
Confidence 6788888888775 457889999999999887653 578999999999976432211 111 222233222
Q ss_pred CccCCCcEEEEEEeCCCC-----CchHHHHhcccceeEecCCCC
Q 016911 341 LTQSDELVFVLAATNLPW-----ELDAAMLRRLEKRVSFSLIAL 379 (380)
Q Consensus 341 l~~~~~~VlVIatTN~~~-----~Ld~aLlrRF~~~I~~plPd~ 379 (380)
..+.+.+|++|+..+ ..|+++.|||. .+.++.|+.
T Consensus 299 ---~~g~i~~IgaTt~~e~r~~~~~d~al~rRf~-~i~v~~p~~ 338 (852)
T TIGR03346 299 ---ARGELHCIGATTLDEYRKYIEKDAALERRFQ-PVFVDEPTV 338 (852)
T ss_pred ---hcCceEEEEeCcHHHHHHHhhcCHHHHhcCC-EEEeCCCCH
Confidence 345588999998763 48999999996 478998874
No 60
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.44 E-value=4.6e-13 Score=141.30 Aligned_cols=143 Identities=19% Similarity=0.265 Sum_probs=100.5
Q ss_pred cCCCCccccccchHHHHHHHHHHHhccccCcccccccCCCCceEEEEcCCCCcHHHHHHHHHHhcCC-------------
Q 016911 202 GSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKT------------- 268 (380)
Q Consensus 202 ~~p~~~~~~l~Gl~~~k~~L~~~l~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~l~~------------- 268 (380)
..+..+|++|+|++.+++.|...+... +.+..+||+||+|+|||++|+.+|+.++.
T Consensus 9 KYRPqtFddVIGQe~vv~~L~~al~~g-----------RLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~P 77 (700)
T PRK12323 9 KWRPRDFTTLVGQEHVVRALTHALEQQ-----------RLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQP 77 (700)
T ss_pred HhCCCcHHHHcCcHHHHHHHHHHHHhC-----------CCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCC
Confidence 456778999999999999999877431 23356899999999999999999999865
Q ss_pred ----------------eEEEEecchhhhhhccchHHHHHHHHHHHH----hcCCeEEEEcCcchhhhhccccchhhHHHH
Q 016911 269 ----------------TFFNISASSVVSKWRGDSEKLIKVLFELAR----HHAPSTIFLDEIDAIISQRGEARSEHEASR 328 (380)
Q Consensus 269 ----------------~~v~v~~s~l~~~~~ge~e~~l~~lf~~A~----~~~p~ILfIDEiD~l~~~~~~~~~~~~~~~ 328 (380)
.+++++...- ..-..++.+.+.+. .....|++|||+|.+..
T Consensus 78 CG~C~sC~~I~aG~hpDviEIdAas~------~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~------------- 138 (700)
T PRK12323 78 CGQCRACTEIDAGRFVDYIEMDAASN------RGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTN------------- 138 (700)
T ss_pred CcccHHHHHHHcCCCCcceEeccccc------CCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCH-------------
Confidence 2223332210 11223344443332 33457999999999842
Q ss_pred HHHHHHHHHhcCCccCCCcEEEEEEeCCCCCchHHHHhcccceeEecCCC
Q 016911 329 RLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRVSFSLIA 378 (380)
Q Consensus 329 ~i~~~Ll~~ldgl~~~~~~VlVIatTN~~~~Ld~aLlrRF~~~I~~plPd 378 (380)
...+.||+.|+ .....+++|.+||.++.+.+.++||+. .+.|..++
T Consensus 139 ~AaNALLKTLE---EPP~~v~FILaTtep~kLlpTIrSRCq-~f~f~~ls 184 (700)
T PRK12323 139 HAFNAMLKTLE---EPPEHVKFILATTDPQKIPVTVLSRCL-QFNLKQMP 184 (700)
T ss_pred HHHHHHHHhhc---cCCCCceEEEEeCChHhhhhHHHHHHH-hcccCCCC
Confidence 24566777774 355667889999999999999999984 46666554
No 61
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.43 E-value=8.8e-13 Score=135.62 Aligned_cols=142 Identities=18% Similarity=0.242 Sum_probs=98.3
Q ss_pred cCCCCccccccchHHHHHHHHHHHhccccCcccccccCCCCceEEEEcCCCCcHHHHHHHHHHhcCCe------------
Q 016911 202 GSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT------------ 269 (380)
Q Consensus 202 ~~p~~~~~~l~Gl~~~k~~L~~~l~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~l~~~------------ 269 (380)
..+...|++++|++.+++.|...+... +.+..+||+||||||||++|+.+|+.++..
T Consensus 11 KyRP~~f~dvVGQe~iv~~L~~~i~~~-----------ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~ 79 (484)
T PRK14956 11 KYRPQFFRDVIHQDLAIGALQNALKSG-----------KIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECT 79 (484)
T ss_pred HhCCCCHHHHhChHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCc
Confidence 446678999999999999888776431 223468999999999999999999998652
Q ss_pred ------------EEEEecchhhhhhccchHHHHHHHHHHHH----hcCCeEEEEcCcchhhhhccccchhhHHHHHHHHH
Q 016911 270 ------------FFNISASSVVSKWRGDSEKLIKVLFELAR----HHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTE 333 (380)
Q Consensus 270 ------------~v~v~~s~l~~~~~ge~e~~l~~lf~~A~----~~~p~ILfIDEiD~l~~~~~~~~~~~~~~~~i~~~ 333 (380)
++.+++..- ..-..++.+.+.+. .....|++|||+|.+.. ...+.
T Consensus 80 sC~~i~~g~~~dviEIdaas~------~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~-------------~A~NA 140 (484)
T PRK14956 80 SCLEITKGISSDVLEIDAASN------RGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTD-------------QSFNA 140 (484)
T ss_pred HHHHHHccCCccceeechhhc------ccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCH-------------HHHHH
Confidence 233332110 11223343333322 23456999999998843 24566
Q ss_pred HHHHhcCCccCCCcEEEEEEeCCCCCchHHHHhcccceeEecCC
Q 016911 334 LLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRVSFSLI 377 (380)
Q Consensus 334 Ll~~ldgl~~~~~~VlVIatTN~~~~Ld~aLlrRF~~~I~~plP 377 (380)
|+..++ .....+++|.+|+.++.+.+++++|+.. +.|..+
T Consensus 141 LLKtLE---EPp~~viFILaTte~~kI~~TI~SRCq~-~~f~~l 180 (484)
T PRK14956 141 LLKTLE---EPPAHIVFILATTEFHKIPETILSRCQD-FIFKKV 180 (484)
T ss_pred HHHHhh---cCCCceEEEeecCChhhccHHHHhhhhe-eeecCC
Confidence 777774 3456688888999999999999999853 555444
No 62
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=99.43 E-value=1.1e-12 Score=132.89 Aligned_cols=149 Identities=16% Similarity=0.219 Sum_probs=100.2
Q ss_pred ccccccchHHHHHHHHHHHhccccCcccccccCCCCceEEEEcCCCCcHHHHHHHHHHhcCCe-----------------
Q 016911 207 KWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT----------------- 269 (380)
Q Consensus 207 ~~~~l~Gl~~~k~~L~~~l~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~l~~~----------------- 269 (380)
.|++|+|++.+++.|+..+.....+...+. .+.+..+||+||||+|||++|+++|+.+...
T Consensus 3 ~f~~IiGq~~~~~~L~~~i~~~~~~~~~~~--~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~ 80 (394)
T PRK07940 3 VWDDLVGQEAVVAELRAAARAARADVAAAG--SGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVL 80 (394)
T ss_pred hhhhccChHHHHHHHHHHHHhccccccccC--CCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHh
Confidence 488999999999999998876443222221 1245789999999999999999999987432
Q ss_pred ------EEEEecchhhhhhccchHHHHHHHHHHHHh----cCCeEEEEcCcchhhhhccccchhhHHHHHHHHHHHHHhc
Q 016911 270 ------FFNISASSVVSKWRGDSEKLIKVLFELARH----HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMD 339 (380)
Q Consensus 270 ------~v~v~~s~l~~~~~ge~e~~l~~lf~~A~~----~~p~ILfIDEiD~l~~~~~~~~~~~~~~~~i~~~Ll~~ld 339 (380)
+..+.+.. . .-.-..++.+++.+.. ....|++|||+|.+... ..+.|+..++
T Consensus 81 ~~~hpD~~~i~~~~---~--~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~~~-------------aanaLLk~LE 142 (394)
T PRK07940 81 AGTHPDVRVVAPEG---L--SIGVDEVRELVTIAARRPSTGRWRIVVIEDADRLTER-------------AANALLKAVE 142 (394)
T ss_pred cCCCCCEEEecccc---c--cCCHHHHHHHHHHHHhCcccCCcEEEEEechhhcCHH-------------HHHHHHHHhh
Confidence 11121110 0 0112335666665543 23469999999998432 2356777775
Q ss_pred CCccCCCcEEEEEEeCCCCCchHHHHhcccceeEecCCCC
Q 016911 340 GLTQSDELVFVLAATNLPWELDAAMLRRLEKRVSFSLIAL 379 (380)
Q Consensus 340 gl~~~~~~VlVIatTN~~~~Ld~aLlrRF~~~I~~plPd~ 379 (380)
. ....+++|.+|+.++.+.++++||+ ..+.|+.|+.
T Consensus 143 e---p~~~~~fIL~a~~~~~llpTIrSRc-~~i~f~~~~~ 178 (394)
T PRK07940 143 E---PPPRTVWLLCAPSPEDVLPTIRSRC-RHVALRTPSV 178 (394)
T ss_pred c---CCCCCeEEEEECChHHChHHHHhhC-eEEECCCCCH
Confidence 3 3333555666666899999999999 4788888863
No 63
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.42 E-value=1.4e-12 Score=134.84 Aligned_cols=144 Identities=19% Similarity=0.269 Sum_probs=98.7
Q ss_pred ccCCCCccccccchHHHHHHHHHHHhccccCcccccccCCCCceEEEEcCCCCcHHHHHHHHHHhcCC------------
Q 016911 201 RGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKT------------ 268 (380)
Q Consensus 201 ~~~p~~~~~~l~Gl~~~k~~L~~~l~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~l~~------------ 268 (380)
...+..+|++++|++.+++.|...+... ..+.++||+|||||||||+|+++|+.++.
T Consensus 6 ~kyRP~~~~divGq~~i~~~L~~~i~~~-----------~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c 74 (472)
T PRK14962 6 RKYRPKTFSEVVGQDHVKKLIINALKKN-----------SISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNEC 74 (472)
T ss_pred HHHCCCCHHHccCcHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCccc
Confidence 3456778999999999988888765431 23456899999999999999999998854
Q ss_pred ------------eEEEEecchhhhhhccchHHHHHHHHHHHHh----cCCeEEEEcCcchhhhhccccchhhHHHHHHHH
Q 016911 269 ------------TFFNISASSVVSKWRGDSEKLIKVLFELARH----HAPSTIFLDEIDAIISQRGEARSEHEASRRLKT 332 (380)
Q Consensus 269 ------------~~v~v~~s~l~~~~~ge~e~~l~~lf~~A~~----~~p~ILfIDEiD~l~~~~~~~~~~~~~~~~i~~ 332 (380)
.++.++++.- ..-..++.+...+.. ....||+|||+|.+... ..+
T Consensus 75 ~~c~~i~~g~~~dv~el~aa~~------~gid~iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt~~-------------a~~ 135 (472)
T PRK14962 75 RACRSIDEGTFMDVIELDAASN------RGIDEIRKIRDAVGYRPMEGKYKVYIIDEVHMLTKE-------------AFN 135 (472)
T ss_pred HHHHHHhcCCCCccEEEeCccc------CCHHHHHHHHHHHhhChhcCCeEEEEEEChHHhHHH-------------HHH
Confidence 3444544321 112233444444332 23469999999988431 234
Q ss_pred HHHHHhcCCccCCCcEEEEEEeCCCCCchHHHHhcccceeEecCCC
Q 016911 333 ELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRVSFSLIA 378 (380)
Q Consensus 333 ~Ll~~ldgl~~~~~~VlVIatTN~~~~Ld~aLlrRF~~~I~~plPd 378 (380)
.|+..++. ..+.+++|++|+.+..+++++++|+. .++|..|+
T Consensus 136 ~LLk~LE~---p~~~vv~Ilattn~~kl~~~L~SR~~-vv~f~~l~ 177 (472)
T PRK14962 136 ALLKTLEE---PPSHVVFVLATTNLEKVPPTIISRCQ-VIEFRNIS 177 (472)
T ss_pred HHHHHHHh---CCCcEEEEEEeCChHhhhHHHhcCcE-EEEECCcc
Confidence 56666643 33456677777778889999999995 67777665
No 64
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=99.42 E-value=2.2e-12 Score=126.07 Aligned_cols=148 Identities=16% Similarity=0.103 Sum_probs=100.1
Q ss_pred cCCCCccccccchHHHHHHHHHHHhccccCcccccccCCCCceEEEEcCCCCcHHHHHHHHHHhcCCeEEEEecchhhhh
Q 016911 202 GSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSK 281 (380)
Q Consensus 202 ~~p~~~~~~l~Gl~~~k~~L~~~l~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~l~~~~v~v~~s~l~~~ 281 (380)
..+..++++++|.+..++.+...+.. ...+..+||+||||+|||++++++++.++.+++.+++++ ..
T Consensus 14 kyrP~~~~~~~~~~~~~~~l~~~~~~-----------~~~~~~lll~G~~G~GKT~la~~l~~~~~~~~~~i~~~~--~~ 80 (316)
T PHA02544 14 KYRPSTIDECILPAADKETFKSIVKK-----------GRIPNMLLHSPSPGTGKTTVAKALCNEVGAEVLFVNGSD--CR 80 (316)
T ss_pred ccCCCcHHHhcCcHHHHHHHHHHHhc-----------CCCCeEEEeeCcCCCCHHHHHHHHHHHhCccceEeccCc--cc
Confidence 34567899999999999998887642 123356667999999999999999999998999999876 11
Q ss_pred hccchHHHHHHHHHHHH-hcCCeEEEEcCcchhhhhccccchhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCCCCCc
Q 016911 282 WRGDSEKLIKVLFELAR-HHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWEL 360 (380)
Q Consensus 282 ~~ge~e~~l~~lf~~A~-~~~p~ILfIDEiD~l~~~~~~~~~~~~~~~~i~~~Ll~~ldgl~~~~~~VlVIatTN~~~~L 360 (380)
.......+........ ...+.||+|||+|.+.... ....|...++. ....+.+|++||.+..+
T Consensus 81 -~~~i~~~l~~~~~~~~~~~~~~vliiDe~d~l~~~~------------~~~~L~~~le~---~~~~~~~Ilt~n~~~~l 144 (316)
T PHA02544 81 -IDFVRNRLTRFASTVSLTGGGKVIIIDEFDRLGLAD------------AQRHLRSFMEA---YSKNCSFIITANNKNGI 144 (316)
T ss_pred -HHHHHHHHHHHHHhhcccCCCeEEEEECcccccCHH------------HHHHHHHHHHh---cCCCceEEEEcCChhhc
Confidence 2111122222211111 1246899999999872110 11223333432 23346688899999999
Q ss_pred hHHHHhcccceeEecCCCC
Q 016911 361 DAAMLRRLEKRVSFSLIAL 379 (380)
Q Consensus 361 d~aLlrRF~~~I~~plPd~ 379 (380)
.+++++||. .+.|+.|+.
T Consensus 145 ~~~l~sR~~-~i~~~~p~~ 162 (316)
T PHA02544 145 IEPLRSRCR-VIDFGVPTK 162 (316)
T ss_pred hHHHHhhce-EEEeCCCCH
Confidence 999999995 678888763
No 65
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.40 E-value=1.4e-12 Score=139.32 Aligned_cols=142 Identities=20% Similarity=0.251 Sum_probs=98.6
Q ss_pred cCCCCccccccchHHHHHHHHHHHhccccCcccccccCCCCceEEEEcCCCCcHHHHHHHHHHhcCC-------------
Q 016911 202 GSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKT------------- 268 (380)
Q Consensus 202 ~~p~~~~~~l~Gl~~~k~~L~~~l~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~l~~------------- 268 (380)
..+..+|++++|++.+++.|...+..- +....+||+||+|+||||+++.+|+.++.
T Consensus 9 KYRPqtFdEVIGQe~Vv~~L~~aL~~g-----------RL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~ 77 (830)
T PRK07003 9 KWRPKDFASLVGQEHVVRALTHALDGG-----------RLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCR 77 (830)
T ss_pred HhCCCcHHHHcCcHHHHHHHHHHHhcC-----------CCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccH
Confidence 456778999999999999998876421 23356899999999999999999998864
Q ss_pred -----------eEEEEecchhhhhhccchHHHHHHHHHHHH----hcCCeEEEEcCcchhhhhccccchhhHHHHHHHHH
Q 016911 269 -----------TFFNISASSVVSKWRGDSEKLIKVLFELAR----HHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTE 333 (380)
Q Consensus 269 -----------~~v~v~~s~l~~~~~ge~e~~l~~lf~~A~----~~~p~ILfIDEiD~l~~~~~~~~~~~~~~~~i~~~ 333 (380)
.+++++..+- ..-..++.+.+.+. .....|++|||+|.|.. ...+.
T Consensus 78 sCr~I~~G~h~DviEIDAas~------rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~-------------~A~NA 138 (830)
T PRK07003 78 ACREIDEGRFVDYVEMDAASN------RGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTN-------------HAFNA 138 (830)
T ss_pred HHHHHhcCCCceEEEeccccc------ccHHHHHHHHHHHHhccccCCceEEEEeChhhCCH-------------HHHHH
Confidence 2333333211 11223444444433 22357999999999843 23456
Q ss_pred HHHHhcCCccCCCcEEEEEEeCCCCCchHHHHhcccceeEecCC
Q 016911 334 LLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRVSFSLI 377 (380)
Q Consensus 334 Ll~~ldgl~~~~~~VlVIatTN~~~~Ld~aLlrRF~~~I~~plP 377 (380)
|++.|+ .....+.+|.+||.++.+.+++++|+. .+.|..+
T Consensus 139 LLKtLE---EPP~~v~FILaTtd~~KIp~TIrSRCq-~f~Fk~L 178 (830)
T PRK07003 139 MLKTLE---EPPPHVKFILATTDPQKIPVTVLSRCL-QFNLKQM 178 (830)
T ss_pred HHHHHH---hcCCCeEEEEEECChhhccchhhhheE-EEecCCc
Confidence 777764 344567889999999999999999984 4555543
No 66
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.39 E-value=2.6e-12 Score=140.18 Aligned_cols=151 Identities=24% Similarity=0.303 Sum_probs=102.7
Q ss_pred ccccchHHHHHHHHHHHhccccCcccccccCCCCceEEEEcCCCCcHHHHHHHHHHhcCCeEEEEecchhhh--------
Q 016911 209 ESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVS-------- 280 (380)
Q Consensus 209 ~~l~Gl~~~k~~L~~~l~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~l~~~~v~v~~s~l~~-------- 280 (380)
.++.|++++|+.+.+.+.......+ .++..++|+||||+|||++++.+|+.++.+++.++++....
T Consensus 322 ~~~~g~~~vK~~i~~~l~~~~~~~~------~~g~~i~l~GppG~GKTtl~~~ia~~l~~~~~~i~~~~~~d~~~i~g~~ 395 (784)
T PRK10787 322 TDHYGLERVKDRILEYLAVQSRVNK------IKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGHR 395 (784)
T ss_pred hhccCHHHHHHHHHHHHHHHHhccc------CCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEEcCCCCCHHHhccch
Confidence 3578899999988876643222111 23457999999999999999999999999999888765421
Q ss_pred -hhccchHHHHHHHHHHHHhcCCeEEEEcCcchhhhhccccchhhHHHHHHHHHHHHHhcC------------CccCCCc
Q 016911 281 -KWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDG------------LTQSDEL 347 (380)
Q Consensus 281 -~~~ge~e~~l~~lf~~A~~~~p~ILfIDEiD~l~~~~~~~~~~~~~~~~i~~~Ll~~ldg------------l~~~~~~ 347 (380)
.|.|.....+...+..+....| ||+|||+|++..+.+.. ....|+..+|. +...-.+
T Consensus 396 ~~~~g~~~G~~~~~l~~~~~~~~-villDEidk~~~~~~g~---------~~~aLlevld~~~~~~~~d~~~~~~~dls~ 465 (784)
T PRK10787 396 RTYIGSMPGKLIQKMAKVGVKNP-LFLLDEIDKMSSDMRGD---------PASALLEVLDPEQNVAFSDHYLEVDYDLSD 465 (784)
T ss_pred hccCCCCCcHHHHHHHhcCCCCC-EEEEEChhhcccccCCC---------HHHHHHHHhccccEEEEecccccccccCCc
Confidence 2455555555555555554444 89999999997643211 12345555542 1112256
Q ss_pred EEEEEEeCCCCCchHHHHhcccceeEecCC
Q 016911 348 VFVLAATNLPWELDAAMLRRLEKRVSFSLI 377 (380)
Q Consensus 348 VlVIatTN~~~~Ld~aLlrRF~~~I~~plP 377 (380)
+++|+|+|.. .++++|++||. .+.|+-+
T Consensus 466 v~~i~TaN~~-~i~~aLl~R~~-ii~~~~~ 493 (784)
T PRK10787 466 VMFVATSNSM-NIPAPLLDRME-VIRLSGY 493 (784)
T ss_pred eEEEEcCCCC-CCCHHHhccee-eeecCCC
Confidence 8999999987 59999999996 4555444
No 67
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=99.38 E-value=1.5e-12 Score=131.48 Aligned_cols=89 Identities=28% Similarity=0.414 Sum_probs=65.0
Q ss_pred ccccchHHHHHHHHHHHhccccCccccccc--CCCCceEEEEcCCCCcHHHHHHHHHHhcCCeEEEEecchhhh-hhcc-
Q 016911 209 ESIKGLENAKRLLKEAVVMPIKYPKYFTGL--LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVS-KWRG- 284 (380)
Q Consensus 209 ~~l~Gl~~~k~~L~~~l~~~l~~~~~~~~~--~~~~~~vLL~GppGtGKT~la~ala~~l~~~~v~v~~s~l~~-~~~g- 284 (380)
..++|++++++.+..++............. --+++++||+||||||||++|+++|..++.+|+.++++.+.. .|.|
T Consensus 12 ~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vdat~~~e~g~vG~ 91 (441)
T TIGR00390 12 KYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGR 91 (441)
T ss_pred hhccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEeecceeecCCcccC
Confidence 458999999999987665432221111111 123489999999999999999999999999999999987763 5776
Q ss_pred chHHHHHHHHHHH
Q 016911 285 DSEKLIKVLFELA 297 (380)
Q Consensus 285 e~e~~l~~lf~~A 297 (380)
+.+..++.+|..|
T Consensus 92 dvE~i~r~l~e~A 104 (441)
T TIGR00390 92 DVESMVRDLTDAA 104 (441)
T ss_pred CHHHHHHHHHHHH
Confidence 5666666666554
No 68
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.38 E-value=3.8e-12 Score=129.78 Aligned_cols=137 Identities=25% Similarity=0.397 Sum_probs=94.3
Q ss_pred CCCccccccchHHHHHH---HHHHHhccccCcccccccCCCCceEEEEcCCCCcHHHHHHHHHHhcCCeEEEEecchhhh
Q 016911 204 PDVKWESIKGLENAKRL---LKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVS 280 (380)
Q Consensus 204 p~~~~~~l~Gl~~~k~~---L~~~l~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~l~~~~v~v~~s~l~~ 280 (380)
+..++++++|++..+.. +.+.+.. ....+++|+||||||||++|+++|+.++.+++.+++....
T Consensus 7 RP~~l~d~vGq~~~v~~~~~L~~~i~~------------~~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~a~~~~- 73 (413)
T PRK13342 7 RPKTLDEVVGQEHLLGPGKPLRRMIEA------------GRLSSMILWGPPGTGKTTLARIIAGATDAPFEALSAVTSG- 73 (413)
T ss_pred CCCCHHHhcCcHHHhCcchHHHHHHHc------------CCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccccc-
Confidence 44578999999988665 6665532 2235899999999999999999999999999999876431
Q ss_pred hhccchHHHHHHHHHHHH----hcCCeEEEEcCcchhhhhccccchhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeC-
Q 016911 281 KWRGDSEKLIKVLFELAR----HHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATN- 355 (380)
Q Consensus 281 ~~~ge~e~~l~~lf~~A~----~~~p~ILfIDEiD~l~~~~~~~~~~~~~~~~i~~~Ll~~ldgl~~~~~~VlVIatTN- 355 (380)
.+.++.++..+. ...+.||||||+|.+... ..+.|+..++. +.+++|++|+
T Consensus 74 ------~~~ir~ii~~~~~~~~~g~~~vL~IDEi~~l~~~-------------~q~~LL~~le~-----~~iilI~att~ 129 (413)
T PRK13342 74 ------VKDLREVIEEARQRRSAGRRTILFIDEIHRFNKA-------------QQDALLPHVED-----GTITLIGATTE 129 (413)
T ss_pred ------HHHHHHHHHHHHHhhhcCCceEEEEechhhhCHH-------------HHHHHHHHhhc-----CcEEEEEeCCC
Confidence 223344444432 224679999999987432 22345555532 3355666553
Q ss_pred -CCCCchHHHHhcccceeEecCCC
Q 016911 356 -LPWELDAAMLRRLEKRVSFSLIA 378 (380)
Q Consensus 356 -~~~~Ld~aLlrRF~~~I~~plPd 378 (380)
....+++++++|+ ..+.|+.|+
T Consensus 130 n~~~~l~~aL~SR~-~~~~~~~ls 152 (413)
T PRK13342 130 NPSFEVNPALLSRA-QVFELKPLS 152 (413)
T ss_pred ChhhhccHHHhccc-eeeEeCCCC
Confidence 3457899999999 567777665
No 69
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=99.38 E-value=2.3e-12 Score=131.20 Aligned_cols=131 Identities=26% Similarity=0.399 Sum_probs=87.5
Q ss_pred cccchHHHHHHHHHHHhccccCcccc----cccCCCCceEEEEcCCCCcHHHHHHHHHHhcCCeEEEEecchhhh-hhcc
Q 016911 210 SIKGLENAKRLLKEAVVMPIKYPKYF----TGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVS-KWRG 284 (380)
Q Consensus 210 ~l~Gl~~~k~~L~~~l~~~l~~~~~~----~~~~~~~~~vLL~GppGtGKT~la~ala~~l~~~~v~v~~s~l~~-~~~g 284 (380)
.++|++.+++.+..++..+.+..... .....+..++||+||||||||++|+++|..++.+|+.++++.+.. .|+|
T Consensus 72 ~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~id~~~l~~~gyvG 151 (412)
T PRK05342 72 YVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILDVPFAIADATTLTEAGYVG 151 (412)
T ss_pred HeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhCCCceecchhhcccCCccc
Confidence 48999999999976664432222110 012235578999999999999999999999999999999988753 5776
Q ss_pred ch-HHHHHHHHHHH----HhcCCeEEEEcCcchhhhhccccchhhH-HHHHHHHHHHHHhcC
Q 016911 285 DS-EKLIKVLFELA----RHHAPSTIFLDEIDAIISQRGEARSEHE-ASRRLKTELLIQMDG 340 (380)
Q Consensus 285 e~-e~~l~~lf~~A----~~~~p~ILfIDEiD~l~~~~~~~~~~~~-~~~~i~~~Ll~~ldg 340 (380)
.. +..+..++..+ ....++||||||||.+...........+ ....+++.|+..|++
T Consensus 152 ~d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~~~~~~~~~~~d~s~~~vQ~~LL~~Leg 213 (412)
T PRK05342 152 EDVENILLKLLQAADYDVEKAQRGIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEG 213 (412)
T ss_pred chHHHHHHHHHHhccccHHHcCCcEEEEechhhhccccCCCCcCCCcccHHHHHHHHHHHhc
Confidence 64 33444444321 2345789999999999875322111111 112366677777765
No 70
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=99.37 E-value=1.6e-12 Score=131.53 Aligned_cols=89 Identities=30% Similarity=0.432 Sum_probs=65.5
Q ss_pred ccccchHHHHHHHHHHHhccccCccccccc--CCCCceEEEEcCCCCcHHHHHHHHHHhcCCeEEEEecchhhh-hhcc-
Q 016911 209 ESIKGLENAKRLLKEAVVMPIKYPKYFTGL--LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVS-KWRG- 284 (380)
Q Consensus 209 ~~l~Gl~~~k~~L~~~l~~~l~~~~~~~~~--~~~~~~vLL~GppGtGKT~la~ala~~l~~~~v~v~~s~l~~-~~~g- 284 (380)
..++|++++++.+..++............. -..+.++||+||||||||++|+++|..++.+|+.++++.+.. .|+|
T Consensus 15 ~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~t~f~e~GyvG~ 94 (443)
T PRK05201 15 KYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGR 94 (443)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCChheeecchhhccCCcccC
Confidence 358999999999987764422211111111 112479999999999999999999999999999999988774 5777
Q ss_pred chHHHHHHHHHHH
Q 016911 285 DSEKLIKVLFELA 297 (380)
Q Consensus 285 e~e~~l~~lf~~A 297 (380)
+.+..++.++..|
T Consensus 95 d~e~~ir~L~~~A 107 (443)
T PRK05201 95 DVESIIRDLVEIA 107 (443)
T ss_pred CHHHHHHHHHHHH
Confidence 4566666666655
No 71
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.37 E-value=2.8e-12 Score=134.32 Aligned_cols=139 Identities=22% Similarity=0.257 Sum_probs=110.9
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHhc----CCeEEEEecchhhhhhccchHHHHHHHHHHHHhcCCeEEEEcCcchhhhh
Q 016911 241 PWKGILLFGPPGTGKTMLAKAVATEC----KTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQ 316 (380)
Q Consensus 241 ~~~~vLL~GppGtGKT~la~ala~~l----~~~~v~v~~s~l~~~~~ge~e~~l~~lf~~A~~~~p~ILfIDEiD~l~~~ 316 (380)
...++||.||+|+|||.|+++++.++ ..++..++|+.+.+.......+.++.+|..+.+++|+||+||++|.+.+.
T Consensus 430 ~~~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~Cs~l~~~~~e~iQk~l~~vfse~~~~~PSiIvLDdld~l~~~ 509 (952)
T KOG0735|consen 430 RHGNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSCSTLDGSSLEKIQKFLNNVFSEALWYAPSIIVLDDLDCLASA 509 (952)
T ss_pred ccccEEEeCCCCCCHhHHHHHHHHHhccccceEEEEEechhccchhHHHHHHHHHHHHHHHHhhCCcEEEEcchhhhhcc
Confidence 34689999999999999999999988 34677899999988877788899999999999999999999999999884
Q ss_pred ccccchhhHHHHHHHHHHHHHh-cCCccCCCcEEEEEEeCCCCCchHHHHh--cccceeEecCCCC
Q 016911 317 RGEARSEHEASRRLKTELLIQM-DGLTQSDELVFVLAATNLPWELDAAMLR--RLEKRVSFSLIAL 379 (380)
Q Consensus 317 ~~~~~~~~~~~~~i~~~Ll~~l-dgl~~~~~~VlVIatTN~~~~Ld~aLlr--RF~~~I~~plPd~ 379 (380)
.....++.......+..+++++ ..+...+..+.||++.+..+.+++.|.+ +|+.++.+|.|+.
T Consensus 510 s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~~~L~s~~~Fq~~~~L~ap~~ 575 (952)
T KOG0735|consen 510 SSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLNPLLVSPLLFQIVIALPAPAV 575 (952)
T ss_pred CcccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcChhhcCccceEEEEecCCcch
Confidence 4333344444444444555433 3334555668999999999999999888 8999999998874
No 72
>PLN03025 replication factor C subunit; Provisional
Probab=99.37 E-value=6.2e-12 Score=123.86 Aligned_cols=144 Identities=25% Similarity=0.260 Sum_probs=94.4
Q ss_pred CCCCccccccchHHHHHHHHHHHhccccCcccccccCCCCceEEEEcCCCCcHHHHHHHHHHhcC-----CeEEEEecch
Q 016911 203 SPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECK-----TTFFNISASS 277 (380)
Q Consensus 203 ~p~~~~~~l~Gl~~~k~~L~~~l~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~l~-----~~~v~v~~s~ 277 (380)
.+..++++++|.+++++.|+..+.. ....++||+||||||||++|+++|+++. ..++.++.++
T Consensus 7 yrP~~l~~~~g~~~~~~~L~~~~~~------------~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln~sd 74 (319)
T PLN03025 7 YRPTKLDDIVGNEDAVSRLQVIARD------------GNMPNLILSGPPGTGKTTSILALAHELLGPNYKEAVLELNASD 74 (319)
T ss_pred cCCCCHHHhcCcHHHHHHHHHHHhc------------CCCceEEEECCCCCCHHHHHHHHHHHHhcccCccceeeecccc
Confidence 4667899999999999988876532 1224799999999999999999999872 2456666655
Q ss_pred hhhhhccchHHHHHHHHHHHH----hcCCeEEEEcCcchhhhhccccchhhHHHHHHHHHHHHHhcCCccCCCcEEEEEE
Q 016911 278 VVSKWRGDSEKLIKVLFELAR----HHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAA 353 (380)
Q Consensus 278 l~~~~~ge~e~~l~~lf~~A~----~~~p~ILfIDEiD~l~~~~~~~~~~~~~~~~i~~~Ll~~ldgl~~~~~~VlVIat 353 (380)
..+. ......++. +.... .....|++|||+|.+.... .+.|+..++.. ...+.+|.+
T Consensus 75 ~~~~--~~vr~~i~~-~~~~~~~~~~~~~kviiiDE~d~lt~~a-------------q~aL~~~lE~~---~~~t~~il~ 135 (319)
T PLN03025 75 DRGI--DVVRNKIKM-FAQKKVTLPPGRHKIVILDEADSMTSGA-------------QQALRRTMEIY---SNTTRFALA 135 (319)
T ss_pred cccH--HHHHHHHHH-HHhccccCCCCCeEEEEEechhhcCHHH-------------HHHHHHHHhcc---cCCceEEEE
Confidence 3221 111111221 11111 1235799999999985421 23345555322 223456778
Q ss_pred eCCCCCchHHHHhcccceeEecCCC
Q 016911 354 TNLPWELDAAMLRRLEKRVSFSLIA 378 (380)
Q Consensus 354 TN~~~~Ld~aLlrRF~~~I~~plPd 378 (380)
+|..+.+.+++++|+. .++|+.|+
T Consensus 136 ~n~~~~i~~~L~SRc~-~i~f~~l~ 159 (319)
T PLN03025 136 CNTSSKIIEPIQSRCA-IVRFSRLS 159 (319)
T ss_pred eCCccccchhHHHhhh-cccCCCCC
Confidence 8888899999999984 67777665
No 73
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=99.37 E-value=6.6e-12 Score=123.49 Aligned_cols=109 Identities=31% Similarity=0.530 Sum_probs=75.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhcCCe---EEEEecchhhhhhccchHHHHHHHHHHHHhc-----CCeEEEEcCcchhh
Q 016911 243 KGILLFGPPGTGKTMLAKAVATECKTT---FFNISASSVVSKWRGDSEKLIKVLFELARHH-----APSTIFLDEIDAII 314 (380)
Q Consensus 243 ~~vLL~GppGtGKT~la~ala~~l~~~---~v~v~~s~l~~~~~ge~e~~l~~lf~~A~~~-----~p~ILfIDEiD~l~ 314 (380)
..++||||||||||+||+.++.....+ |+++++.. ...+.++.+|+.++.. ...|||||||+.+-
T Consensus 163 pSmIlWGppG~GKTtlArlia~tsk~~SyrfvelSAt~-------a~t~dvR~ife~aq~~~~l~krkTilFiDEiHRFN 235 (554)
T KOG2028|consen 163 PSMILWGPPGTGKTTLARLIASTSKKHSYRFVELSATN-------AKTNDVRDIFEQAQNEKSLTKRKTILFIDEIHRFN 235 (554)
T ss_pred CceEEecCCCCchHHHHHHHHhhcCCCceEEEEEeccc-------cchHHHHHHHHHHHHHHhhhcceeEEEeHHhhhhh
Confidence 579999999999999999999988665 55555433 2345567777777632 35799999999883
Q ss_pred hhccccchhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEe--CCCCCchHHHHhcccceeEecC
Q 016911 315 SQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAAT--NLPWELDAAMLRRLEKRVSFSL 376 (380)
Q Consensus 315 ~~~~~~~~~~~~~~~i~~~Ll~~ldgl~~~~~~VlVIatT--N~~~~Ld~aLlrRF~~~I~~pl 376 (380)
... +..|+..+ ..+.|++|++| |....|..+|++|+...+-=++
T Consensus 236 ksQ-------------QD~fLP~V-----E~G~I~lIGATTENPSFqln~aLlSRC~VfvLekL 281 (554)
T KOG2028|consen 236 KSQ-------------QDTFLPHV-----ENGDITLIGATTENPSFQLNAALLSRCRVFVLEKL 281 (554)
T ss_pred hhh-------------hhccccee-----ccCceEEEecccCCCccchhHHHHhccceeEeccC
Confidence 322 22344443 34557777766 5556799999999865443333
No 74
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=99.36 E-value=4.5e-12 Score=134.93 Aligned_cols=142 Identities=20% Similarity=0.256 Sum_probs=98.7
Q ss_pred CCCCccccccchHHHHHHHHHHHhccccCcccccccCCCCceEEEEcCCCCcHHHHHHHHHHhcCCe-------------
Q 016911 203 SPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT------------- 269 (380)
Q Consensus 203 ~p~~~~~~l~Gl~~~k~~L~~~l~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~l~~~------------- 269 (380)
.+..+|++++|++.+++.|...+... +.+..+||+||+|+|||++|+.+|+.++..
T Consensus 10 yRP~~f~divGQe~vv~~L~~~l~~~-----------rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~~ 78 (647)
T PRK07994 10 WRPQTFAEVVGQEHVLTALANALDLG-----------RLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDN 78 (647)
T ss_pred hCCCCHHHhcCcHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCHH
Confidence 45678999999999999998876431 223558999999999999999999998652
Q ss_pred -----------EEEEecchhhhhhccchHHHHHHHHHHHH----hcCCeEEEEcCcchhhhhccccchhhHHHHHHHHHH
Q 016911 270 -----------FFNISASSVVSKWRGDSEKLIKVLFELAR----HHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTEL 334 (380)
Q Consensus 270 -----------~v~v~~s~l~~~~~ge~e~~l~~lf~~A~----~~~p~ILfIDEiD~l~~~~~~~~~~~~~~~~i~~~L 334 (380)
++.++..+- ..-..++.+...+. .....|++|||+|.+.. ...+.|
T Consensus 79 C~~i~~g~~~D~ieidaas~------~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~-------------~a~NAL 139 (647)
T PRK07994 79 CREIEQGRFVDLIEIDAASR------TKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSR-------------HSFNAL 139 (647)
T ss_pred HHHHHcCCCCCceeeccccc------CCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCH-------------HHHHHH
Confidence 233333210 11122333333322 23456999999998843 245678
Q ss_pred HHHhcCCccCCCcEEEEEEeCCCCCchHHHHhcccceeEecCCC
Q 016911 335 LIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRVSFSLIA 378 (380)
Q Consensus 335 l~~ldgl~~~~~~VlVIatTN~~~~Ld~aLlrRF~~~I~~plPd 378 (380)
+..|+ ...+.+.+|.+|+.++.+.+++++|+ ..+.|..++
T Consensus 140 LKtLE---EPp~~v~FIL~Tt~~~kLl~TI~SRC-~~~~f~~Ls 179 (647)
T PRK07994 140 LKTLE---EPPEHVKFLLATTDPQKLPVTILSRC-LQFHLKALD 179 (647)
T ss_pred HHHHH---cCCCCeEEEEecCCccccchHHHhhh-eEeeCCCCC
Confidence 88774 34556778888989999999999997 456666554
No 75
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.36 E-value=4.3e-12 Score=133.98 Aligned_cols=137 Identities=23% Similarity=0.359 Sum_probs=112.6
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHhcCCeEEEEecchhhhhhccchHHHHHHHHHHHHhcCCeEEEEcCcchhhhhccc
Q 016911 240 SPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGE 319 (380)
Q Consensus 240 ~~~~~vLL~GppGtGKT~la~ala~~l~~~~v~v~~s~l~~~~~ge~e~~l~~lf~~A~~~~p~ILfIDEiD~l~~~~~~ 319 (380)
+....+||+|+||||||++.+++|.+++.+++.++|.++.....+..+..+...|..|+.+.|+|||+-++|.+.-++++
T Consensus 429 ~~~~~vLLhG~~g~GK~t~V~~vas~lg~h~~evdc~el~~~s~~~~etkl~~~f~~a~~~~pavifl~~~dvl~id~dg 508 (953)
T KOG0736|consen 429 TLNPSVLLHGPPGSGKTTVVRAVASELGLHLLEVDCYELVAESASHTETKLQAIFSRARRCSPAVLFLRNLDVLGIDQDG 508 (953)
T ss_pred ccceEEEEeCCCCCChHHHHHHHHHHhCCceEeccHHHHhhcccchhHHHHHHHHHHHhhcCceEEEEeccceeeecCCC
Confidence 34467999999999999999999999999999999999999999999999999999999999999999999999865543
Q ss_pred cchhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCCCCCchHHHHhcccceeEecCCCC
Q 016911 320 ARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRVSFSLIAL 379 (380)
Q Consensus 320 ~~~~~~~~~~i~~~Ll~~ldgl~~~~~~VlVIatTN~~~~Ld~aLlrRF~~~I~~plPd~ 379 (380)
.........+..++. .+.+......++||++++..+.+++.+++-|.+.|.++.|+.
T Consensus 509 --ged~rl~~~i~~~ls-~e~~~~~~~~~ivv~t~~s~~~lp~~i~~~f~~ei~~~~lse 565 (953)
T KOG0736|consen 509 --GEDARLLKVIRHLLS-NEDFKFSCPPVIVVATTSSIEDLPADIQSLFLHEIEVPALSE 565 (953)
T ss_pred --chhHHHHHHHHHHHh-cccccCCCCceEEEEeccccccCCHHHHHhhhhhccCCCCCH
Confidence 222112222333333 333444566789999999999999999999999999999975
No 76
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.36 E-value=5.5e-12 Score=126.51 Aligned_cols=143 Identities=16% Similarity=0.214 Sum_probs=96.3
Q ss_pred cCCCCccccccchHHHHHHHHHHHhccccCcccccccCCCCceEEEEcCCCCcHHHHHHHHHHhcCCe------------
Q 016911 202 GSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT------------ 269 (380)
Q Consensus 202 ~~p~~~~~~l~Gl~~~k~~L~~~l~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~l~~~------------ 269 (380)
..+...|++++|++.+++.+...+... +.+..+||+||||+|||++|+++|+.++..
T Consensus 9 kyrP~~~~~iiGq~~~~~~l~~~~~~~-----------~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~ 77 (363)
T PRK14961 9 KWRPQYFRDIIGQKHIVTAISNGLSLG-----------RIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCI 77 (363)
T ss_pred HhCCCchhhccChHHHHHHHHHHHHcC-----------CCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCH
Confidence 346678999999999999988876431 233568999999999999999999988532
Q ss_pred ------------EEEEecchhhhhhccchHHHHHHHHHHHHh----cCCeEEEEcCcchhhhhccccchhhHHHHHHHHH
Q 016911 270 ------------FFNISASSVVSKWRGDSEKLIKVLFELARH----HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTE 333 (380)
Q Consensus 270 ------------~v~v~~s~l~~~~~ge~e~~l~~lf~~A~~----~~p~ILfIDEiD~l~~~~~~~~~~~~~~~~i~~~ 333 (380)
++.++++. ...-..++.+...+.. ....|++|||+|.+.. ...+.
T Consensus 78 ~c~~~~~~~~~d~~~~~~~~------~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~-------------~a~na 138 (363)
T PRK14961 78 ICKEIEKGLCLDLIEIDAAS------RTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLSR-------------HSFNA 138 (363)
T ss_pred HHHHHhcCCCCceEEecccc------cCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcCH-------------HHHHH
Confidence 22222211 0112334444444332 2346999999998832 13345
Q ss_pred HHHHhcCCccCCCcEEEEEEeCCCCCchHHHHhcccceeEecCCC
Q 016911 334 LLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRVSFSLIA 378 (380)
Q Consensus 334 Ll~~ldgl~~~~~~VlVIatTN~~~~Ld~aLlrRF~~~I~~plPd 378 (380)
|+..++. ....+.+|.+|+.++.+.+++++|+ ..++|+.|+
T Consensus 139 LLk~lEe---~~~~~~fIl~t~~~~~l~~tI~SRc-~~~~~~~l~ 179 (363)
T PRK14961 139 LLKTLEE---PPQHIKFILATTDVEKIPKTILSRC-LQFKLKIIS 179 (363)
T ss_pred HHHHHhc---CCCCeEEEEEcCChHhhhHHHHhhc-eEEeCCCCC
Confidence 6766643 3445667778888888999999998 457777665
No 77
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.35 E-value=5.5e-12 Score=136.91 Aligned_cols=153 Identities=22% Similarity=0.244 Sum_probs=102.8
Q ss_pred cccchHHHHHHHHHHHhccccCcccccccCCCCceEEEEcCCCCcHHHHHHHHHHhcCCeEEEEecchhhh-----hhcc
Q 016911 210 SIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVS-----KWRG 284 (380)
Q Consensus 210 ~l~Gl~~~k~~L~~~l~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~l~~~~v~v~~s~l~~-----~~~g 284 (380)
.++|++++++.+.+.+.....-. ....+|...+||+||||||||++|+++|..++.+++.++++++.. ..+|
T Consensus 459 ~ViGQ~~ai~~l~~~i~~~~~gl---~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~~~~i~id~se~~~~~~~~~LiG 535 (758)
T PRK11034 459 LVFGQDKAIEALTEAIKMSRAGL---GHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIG 535 (758)
T ss_pred eEeCcHHHHHHHHHHHHHHhccc---cCCCCCcceEEEECCCCCCHHHHHHHHHHHhCCCcEEeechhhcccccHHHHcC
Confidence 47888988888887765422110 111245567999999999999999999999999999999987642 2222
Q ss_pred chHH-----HHHHHHHHHHhcCCeEEEEcCcchhhhhccccchhhHHHHHHHHHHHHHhcCC--cc------CCCcEEEE
Q 016911 285 DSEK-----LIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGL--TQ------SDELVFVL 351 (380)
Q Consensus 285 e~e~-----~l~~lf~~A~~~~p~ILfIDEiD~l~~~~~~~~~~~~~~~~i~~~Ll~~ldgl--~~------~~~~VlVI 351 (380)
.... .-..+....+....+||||||+|++.++ +.+.|+..++.- .. .-+++++|
T Consensus 536 ~~~gyvg~~~~g~L~~~v~~~p~sVlllDEieka~~~-------------v~~~LLq~ld~G~ltd~~g~~vd~rn~iiI 602 (758)
T PRK11034 536 APPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHPD-------------VFNLLLQVMDNGTLTDNNGRKADFRNVVLV 602 (758)
T ss_pred CCCCcccccccchHHHHHHhCCCcEEEeccHhhhhHH-------------HHHHHHHHHhcCeeecCCCceecCCCcEEE
Confidence 2110 0112333444556689999999998532 455666666532 11 12467899
Q ss_pred EEeCCC-------------------------CCchHHHHhcccceeEecCCC
Q 016911 352 AATNLP-------------------------WELDAAMLRRLEKRVSFSLIA 378 (380)
Q Consensus 352 atTN~~-------------------------~~Ld~aLlrRF~~~I~~plPd 378 (380)
+|||.. ..+.|+++.|++.++.|+..+
T Consensus 603 ~TsN~g~~~~~~~~~g~~~~~~~~~~~~~~~~~f~pefl~Rid~ii~f~~L~ 654 (758)
T PRK11034 603 MTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLS 654 (758)
T ss_pred EeCCcCHHHHhhcccCcccchhhHHHHHHHHHhcCHHHHccCCEEEEcCCCC
Confidence 999933 115588889999999887765
No 78
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.35 E-value=4.6e-12 Score=132.28 Aligned_cols=141 Identities=18% Similarity=0.201 Sum_probs=97.5
Q ss_pred cCCCCccccccchHHHHHHHHHHHhccccCcccccccCCCCceEEEEcCCCCcHHHHHHHHHHhcCCe------------
Q 016911 202 GSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT------------ 269 (380)
Q Consensus 202 ~~p~~~~~~l~Gl~~~k~~L~~~l~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~l~~~------------ 269 (380)
..+..+|++++|++.+++.|...+... +.+..+||+||||+|||++|+.+|+.++..
T Consensus 9 kyRP~~f~divGq~~v~~~L~~~~~~~-----------~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~ 77 (509)
T PRK14958 9 KWRPRCFQEVIGQAPVVRALSNALDQQ-----------YLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCE 77 (509)
T ss_pred HHCCCCHHHhcCCHHHHHHHHHHHHhC-----------CCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCH
Confidence 456778999999999999999877431 233568999999999999999999988542
Q ss_pred ------------EEEEecchhhhhhccchHHHHHHHHHHHH----hcCCeEEEEcCcchhhhhccccchhhHHHHHHHHH
Q 016911 270 ------------FFNISASSVVSKWRGDSEKLIKVLFELAR----HHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTE 333 (380)
Q Consensus 270 ------------~v~v~~s~l~~~~~ge~e~~l~~lf~~A~----~~~p~ILfIDEiD~l~~~~~~~~~~~~~~~~i~~~ 333 (380)
+++++.+.- ..-..++.+.+.+. .....|++|||+|.+... ..+.
T Consensus 78 ~C~~i~~g~~~d~~eidaas~------~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls~~-------------a~na 138 (509)
T PRK14958 78 NCREIDEGRFPDLFEVDAASR------TKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLSGH-------------SFNA 138 (509)
T ss_pred HHHHHhcCCCceEEEEccccc------CCHHHHHHHHHHHhhccccCCcEEEEEEChHhcCHH-------------HHHH
Confidence 444443321 11222344444332 223469999999998532 3456
Q ss_pred HHHHhcCCccCCCcEEEEEEeCCCCCchHHHHhcccceeEecC
Q 016911 334 LLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRVSFSL 376 (380)
Q Consensus 334 Ll~~ldgl~~~~~~VlVIatTN~~~~Ld~aLlrRF~~~I~~pl 376 (380)
|+..++. ....+.+|.+|+.+..+.+.+++|+. .++|..
T Consensus 139 LLk~LEe---pp~~~~fIlattd~~kl~~tI~SRc~-~~~f~~ 177 (509)
T PRK14958 139 LLKTLEE---PPSHVKFILATTDHHKLPVTVLSRCL-QFHLAQ 177 (509)
T ss_pred HHHHHhc---cCCCeEEEEEECChHhchHHHHHHhh-hhhcCC
Confidence 7777743 34457778888888889999999984 445543
No 79
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.35 E-value=6.6e-12 Score=132.88 Aligned_cols=143 Identities=20% Similarity=0.247 Sum_probs=99.0
Q ss_pred cCCCCccccccchHHHHHHHHHHHhccccCcccccccCCCCceEEEEcCCCCcHHHHHHHHHHhcCC-------------
Q 016911 202 GSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKT------------- 268 (380)
Q Consensus 202 ~~p~~~~~~l~Gl~~~k~~L~~~l~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~l~~------------- 268 (380)
..+..+|++++|++.+++.|...+... +.+..+||+||+|+|||++|+++|+.++.
T Consensus 8 KyRPktFddVIGQe~vv~~L~~aI~~g-----------rl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~ 76 (702)
T PRK14960 8 KYRPRNFNELVGQNHVSRALSSALERG-----------RLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCA 76 (702)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCH
Confidence 356678999999999999998877421 33467899999999999999999999864
Q ss_pred -----------eEEEEecchhhhhhccchHHHHHHHHHHHH----hcCCeEEEEcCcchhhhhccccchhhHHHHHHHHH
Q 016911 269 -----------TFFNISASSVVSKWRGDSEKLIKVLFELAR----HHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTE 333 (380)
Q Consensus 269 -----------~~v~v~~s~l~~~~~ge~e~~l~~lf~~A~----~~~p~ILfIDEiD~l~~~~~~~~~~~~~~~~i~~~ 333 (380)
.++.+++++- ..-..++.+...+. ..+..|++|||+|.+... ..+.
T Consensus 77 sC~~I~~g~hpDviEIDAAs~------~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~-------------A~NA 137 (702)
T PRK14960 77 TCKAVNEGRFIDLIEIDAASR------TKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTH-------------SFNA 137 (702)
T ss_pred HHHHHhcCCCCceEEeccccc------CCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHH-------------HHHH
Confidence 2344443321 11223444443332 234579999999988432 3456
Q ss_pred HHHHhcCCccCCCcEEEEEEeCCCCCchHHHHhcccceeEecCCC
Q 016911 334 LLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRVSFSLIA 378 (380)
Q Consensus 334 Ll~~ldgl~~~~~~VlVIatTN~~~~Ld~aLlrRF~~~I~~plPd 378 (380)
|+..++. ....+.+|.+|+.+..+.+++++|+. .+.|..++
T Consensus 138 LLKtLEE---PP~~v~FILaTtd~~kIp~TIlSRCq-~feFkpLs 178 (702)
T PRK14960 138 LLKTLEE---PPEHVKFLFATTDPQKLPITVISRCL-QFTLRPLA 178 (702)
T ss_pred HHHHHhc---CCCCcEEEEEECChHhhhHHHHHhhh-eeeccCCC
Confidence 7777643 34556778888888889999999984 56666554
No 80
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.34 E-value=7.7e-12 Score=135.82 Aligned_cols=142 Identities=20% Similarity=0.242 Sum_probs=96.5
Q ss_pred cCCCCccccccchHHHHHHHHHHHhccccCcccccccCCCCceEEEEcCCCCcHHHHHHHHHHhcCCeE-----------
Q 016911 202 GSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTF----------- 270 (380)
Q Consensus 202 ~~p~~~~~~l~Gl~~~k~~L~~~l~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~l~~~~----------- 270 (380)
..+..+|++|+|++.+++.|+..+... +.+..+||+||||||||++|+++|+.++..-
T Consensus 9 KyRP~tFddIIGQe~Iv~~LknaI~~~-----------rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~ 77 (944)
T PRK14949 9 KWRPATFEQMVGQSHVLHALTNALTQQ-----------RLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCS 77 (944)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHHhC-----------CCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCch
Confidence 456678999999999999998876431 2235579999999999999999999986531
Q ss_pred -------------EEEecchhhhhhccchHHHHHHHHHHHH----hcCCeEEEEcCcchhhhhccccchhhHHHHHHHHH
Q 016911 271 -------------FNISASSVVSKWRGDSEKLIKVLFELAR----HHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTE 333 (380)
Q Consensus 271 -------------v~v~~s~l~~~~~ge~e~~l~~lf~~A~----~~~p~ILfIDEiD~l~~~~~~~~~~~~~~~~i~~~ 333 (380)
+.++..+ ...-..++.+...+. .....|+||||+|.+.. ...+.
T Consensus 78 sC~~i~~g~~~DviEidAas------~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT~-------------eAqNA 138 (944)
T PRK14949 78 SCVEIAQGRFVDLIEVDAAS------RTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLSR-------------SSFNA 138 (944)
T ss_pred HHHHHhcCCCceEEEecccc------ccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhcCH-------------HHHHH
Confidence 1121110 011122344333332 23356999999999842 34567
Q ss_pred HHHHhcCCccCCCcEEEEEEeCCCCCchHHHHhcccceeEecCC
Q 016911 334 LLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRVSFSLI 377 (380)
Q Consensus 334 Ll~~ldgl~~~~~~VlVIatTN~~~~Ld~aLlrRF~~~I~~plP 377 (380)
|+..|+ .....+.+|.+|+.+..+.+++++|+. .+.|..+
T Consensus 139 LLKtLE---EPP~~vrFILaTTe~~kLl~TIlSRCq-~f~fkpL 178 (944)
T PRK14949 139 LLKTLE---EPPEHVKFLLATTDPQKLPVTVLSRCL-QFNLKSL 178 (944)
T ss_pred HHHHHh---ccCCCeEEEEECCCchhchHHHHHhhe-EEeCCCC
Confidence 788774 345567788888888899999999983 4555444
No 81
>PRK04195 replication factor C large subunit; Provisional
Probab=99.34 E-value=1.2e-11 Score=128.41 Aligned_cols=148 Identities=25% Similarity=0.323 Sum_probs=101.9
Q ss_pred CCCCccccccchHHHHHHHHHHHhccccCcccccccCCCCceEEEEcCCCCcHHHHHHHHHHhcCCeEEEEecchhhhhh
Q 016911 203 SPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKW 282 (380)
Q Consensus 203 ~p~~~~~~l~Gl~~~k~~L~~~l~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~l~~~~v~v~~s~l~~~~ 282 (380)
.+..++++++|.+.+++.+..++..... ..+.+++||+||||+|||++|+++|++++.+++.+++++....
T Consensus 8 yrP~~l~dlvg~~~~~~~l~~~l~~~~~--------g~~~~~lLL~GppG~GKTtla~ala~el~~~~ielnasd~r~~- 78 (482)
T PRK04195 8 YRPKTLSDVVGNEKAKEQLREWIESWLK--------GKPKKALLLYGPPGVGKTSLAHALANDYGWEVIELNASDQRTA- 78 (482)
T ss_pred cCCCCHHHhcCCHHHHHHHHHHHHHHhc--------CCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEcccccccH-
Confidence 4566799999999999999988754321 1346899999999999999999999999999999998764321
Q ss_pred ccchHHHHHHHHHHHHh------cCCeEEEEcCcchhhhhccccchhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCC
Q 016911 283 RGDSEKLIKVLFELARH------HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNL 356 (380)
Q Consensus 283 ~ge~e~~l~~lf~~A~~------~~p~ILfIDEiD~l~~~~~~~~~~~~~~~~i~~~Ll~~ldgl~~~~~~VlVIatTN~ 356 (380)
..++.+...+.. ..+.||+|||+|.+....+ +.....|+..++. ....+|+++|.
T Consensus 79 -----~~i~~~i~~~~~~~sl~~~~~kvIiIDEaD~L~~~~d---------~~~~~aL~~~l~~-----~~~~iIli~n~ 139 (482)
T PRK04195 79 -----DVIERVAGEAATSGSLFGARRKLILLDEVDGIHGNED---------RGGARAILELIKK-----AKQPIILTAND 139 (482)
T ss_pred -----HHHHHHHHHhhccCcccCCCCeEEEEecCcccccccc---------hhHHHHHHHHHHc-----CCCCEEEeccC
Confidence 122222222211 2467999999999865211 1123345554431 12346778899
Q ss_pred CCCchH-HHHhcccceeEecCCCC
Q 016911 357 PWELDA-AMLRRLEKRVSFSLIAL 379 (380)
Q Consensus 357 ~~~Ld~-aLlrRF~~~I~~plPd~ 379 (380)
+..+.. .+++|+ ..+.|+.|+.
T Consensus 140 ~~~~~~k~Lrsr~-~~I~f~~~~~ 162 (482)
T PRK04195 140 PYDPSLRELRNAC-LMIEFKRLST 162 (482)
T ss_pred ccccchhhHhccc-eEEEecCCCH
Confidence 888877 676666 5688888764
No 82
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=99.33 E-value=1e-11 Score=130.37 Aligned_cols=184 Identities=20% Similarity=0.289 Sum_probs=106.4
Q ss_pred hHHHHHHHHHhcCCCCCCCCcHHH-----HHHhhhccchhhccCCCCccccccchHHHHHHHHHHHhccccCcccccccC
Q 016911 165 GVLANVINERLQKPLLPNFDSAET-----RALAESLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLL 239 (380)
Q Consensus 165 ~~~~~~l~er~~~~v~~~l~~~e~-----r~~~~~~~~~~~~~~p~~~~~~l~Gl~~~k~~L~~~l~~~l~~~~~~~~~~ 239 (380)
-+|++.++.....++..+-..... +....++........+...|++++|.+..++.++..+..
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rp~~f~~iiGqs~~i~~l~~al~~------------ 83 (531)
T TIGR02902 16 LYFFNALKNQQTNKITIDKESKKELEKLNKMRAIRLTEPLSEKTRPKSFDEIIGQEEGIKALKAALCG------------ 83 (531)
T ss_pred HHHHHHHHhhcCCeeeeehhhhHHHHHHHHhhhhhhcchHHHhhCcCCHHHeeCcHHHHHHHHHHHhC------------
Confidence 456666655544443333222111 122223334444455677899999999999888865321
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHhc----------CCeEEEEecchh-------hhhhccchHHH-------------
Q 016911 240 SPWKGILLFGPPGTGKTMLAKAVATEC----------KTTFFNISASSV-------VSKWRGDSEKL------------- 289 (380)
Q Consensus 240 ~~~~~vLL~GppGtGKT~la~ala~~l----------~~~~v~v~~s~l-------~~~~~ge~e~~------------- 289 (380)
..+.++||+||||||||++|+++++.+ +.+|+.++|+.. .....+.....
T Consensus 84 ~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~~fi~id~~~~~~~~~~~~~~li~~~~~p~~~~~~~~g~~g~ 163 (531)
T TIGR02902 84 PNPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEGAAFVEIDATTARFDERGIADPLIGSVHDPIYQGAGPLGIAGI 163 (531)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCCCCEEEEccccccCCccccchhhcCCcccchhccccccccCCc
Confidence 234689999999999999999998642 368899998642 11111110000
Q ss_pred ---HHHHHHHHHhcCCeEEEEcCcchhhhhccccchhhHHHHHHHHHHHHHhcCC-------------------------
Q 016911 290 ---IKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGL------------------------- 341 (380)
Q Consensus 290 ---l~~lf~~A~~~~p~ILfIDEiD~l~~~~~~~~~~~~~~~~i~~~Ll~~ldgl------------------------- 341 (380)
....+. ...+++|||||++.+.+.. ++.|+..++.-
T Consensus 164 ~~~~~G~l~---~a~gG~L~IdEI~~L~~~~-------------q~~LL~~Le~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (531)
T TIGR02902 164 PQPKPGAVT---RAHGGVLFIDEIGELHPVQ-------------MNKLLKVLEDRKVFLDSAYYNSENPNIPSHIHDIFQ 227 (531)
T ss_pred ccccCchhh---ccCCcEEEEechhhCCHHH-------------HHHHHHHHHhCeeeeccccccccCcccccchhhhcc
Confidence 001112 2235799999999986532 22233332210
Q ss_pred ccCC-CcEEEEEEeCCCCCchHHHHhcccceeEecCC
Q 016911 342 TQSD-ELVFVLAATNLPWELDAAMLRRLEKRVSFSLI 377 (380)
Q Consensus 342 ~~~~-~~VlVIatTN~~~~Ld~aLlrRF~~~I~~plP 377 (380)
...+ ...++++||+.++.+++++++|+. .+.|+.+
T Consensus 228 ~~~~~d~rlI~ATt~~p~~L~paLrsR~~-~I~f~pL 263 (531)
T TIGR02902 228 NGLPADFRLIGATTRNPEEIPPALRSRCV-EIFFRPL 263 (531)
T ss_pred cCcccceEEEEEecCCcccCChHHhhhhh-eeeCCCC
Confidence 0011 224455667889999999999985 4555543
No 83
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=99.31 E-value=1e-11 Score=126.18 Aligned_cols=148 Identities=26% Similarity=0.405 Sum_probs=94.5
Q ss_pred ccccchHHHHHHHHHHHhccccCcccc------cccCCCCceEEEEcCCCCcHHHHHHHHHHhcCCeEEEEecchhhh-h
Q 016911 209 ESIKGLENAKRLLKEAVVMPIKYPKYF------TGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVS-K 281 (380)
Q Consensus 209 ~~l~Gl~~~k~~L~~~l~~~l~~~~~~------~~~~~~~~~vLL~GppGtGKT~la~ala~~l~~~~v~v~~s~l~~-~ 281 (380)
+.++|++++++.+..++....+..... .+......++||+||||||||++|+++|..++.+|..++++.+.. .
T Consensus 77 ~~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~~pf~~~da~~L~~~g 156 (413)
T TIGR00382 77 EYVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILNVPFAIADATTLTEAG 156 (413)
T ss_pred ceecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcCCCeEEechhhccccc
Confidence 457999999999887664322221110 011123468999999999999999999999999999999887653 4
Q ss_pred hccch-HHHHHHHHHHH----HhcCCeEEEEcCcchhhhhccccchhhHH-HHHHHHHHHHHhcCCcc----------CC
Q 016911 282 WRGDS-EKLIKVLFELA----RHHAPSTIFLDEIDAIISQRGEARSEHEA-SRRLKTELLIQMDGLTQ----------SD 345 (380)
Q Consensus 282 ~~ge~-e~~l~~lf~~A----~~~~p~ILfIDEiD~l~~~~~~~~~~~~~-~~~i~~~Ll~~ldgl~~----------~~ 345 (380)
|+|.. +..+..++..+ ....++||||||+|++.+.........++ ...+++.|+..|+|... ..
T Consensus 157 yvG~d~e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~~~~~~~s~~~dvsg~~vq~~LL~iLeG~~~~v~~~~gr~~~~ 236 (413)
T TIGR00382 157 YVGEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKISRKSENPSITRDVSGEGVQQALLKIIEGTVANVPPQGGRKHPY 236 (413)
T ss_pred cccccHHHHHHHHHHhCcccHHhcccceEEecccchhchhhccccccccccchhHHHHHHHHhhccceecccCCCccccC
Confidence 66764 44444443322 23357899999999998754321111111 12356667777765421 11
Q ss_pred CcEEEEEEeCC
Q 016911 346 ELVFVLAATNL 356 (380)
Q Consensus 346 ~~VlVIatTN~ 356 (380)
.+.++|.|+|-
T Consensus 237 ~~~i~i~TsNi 247 (413)
T TIGR00382 237 QEFIQIDTSNI 247 (413)
T ss_pred CCeEEEEcCCc
Confidence 34667788776
No 84
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.31 E-value=2.9e-11 Score=116.14 Aligned_cols=124 Identities=24% Similarity=0.233 Sum_probs=81.0
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHhcCCeEEEEecch------hhhhhccchHHH-HHH-------------------HH
Q 016911 241 PWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASS------VVSKWRGDSEKL-IKV-------------------LF 294 (380)
Q Consensus 241 ~~~~vLL~GppGtGKT~la~ala~~l~~~~v~v~~s~------l~~~~~ge~e~~-l~~-------------------lf 294 (380)
.+.++||.||||||||++|+++|..++.+++.++|.. +.+.+.+..... ... .+
T Consensus 20 ~g~~vLL~G~~GtGKT~lA~~la~~lg~~~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l 99 (262)
T TIGR02640 20 SGYPVHLRGPAGTGKTTLAMHVARKRDRPVMLINGDAELTTSDLVGSYAGYTRKKVHDQFIHNVVKLEDIVRQNWVDNRL 99 (262)
T ss_pred cCCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEEeCCccCCHHHHhhhhcccchhhHHHHHHHHhhhhhcccceeecCchH
Confidence 4578999999999999999999999999999998753 333332221111 110 11
Q ss_pred HHHHhcCCeEEEEcCcchhhhhccccchhhHHHHHHHHHHHHHhcCCc----c---------CCCcEEEEEEeCCCC---
Q 016911 295 ELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT----Q---------SDELVFVLAATNLPW--- 358 (380)
Q Consensus 295 ~~A~~~~p~ILfIDEiD~l~~~~~~~~~~~~~~~~i~~~Ll~~ldgl~----~---------~~~~VlVIatTN~~~--- 358 (380)
..|.. .+.+|+|||++.+.++ +.+.|+..++.-. . ....+.||+|+|...
T Consensus 100 ~~A~~-~g~~lllDEi~r~~~~-------------~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frvIaTsN~~~~~g 165 (262)
T TIGR02640 100 TLAVR-EGFTLVYDEFTRSKPE-------------TNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRVIFTSNPVEYAG 165 (262)
T ss_pred HHHHH-cCCEEEEcchhhCCHH-------------HHHHHHHHhcCCeEEccCCCCCCceEecCCCCEEEEeeCCccccc
Confidence 11222 2569999999987432 2333444443210 0 113567899999863
Q ss_pred --CchHHHHhcccceeEecCCCC
Q 016911 359 --ELDAAMLRRLEKRVSFSLIAL 379 (380)
Q Consensus 359 --~Ld~aLlrRF~~~I~~plPd~ 379 (380)
.+++++++|| ..+.++.|+.
T Consensus 166 ~~~l~~aL~~R~-~~i~i~~P~~ 187 (262)
T TIGR02640 166 VHETQDALLDRL-ITIFMDYPDI 187 (262)
T ss_pred eecccHHHHhhc-EEEECCCCCH
Confidence 4789999999 5688998874
No 85
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.31 E-value=2.3e-11 Score=128.63 Aligned_cols=144 Identities=20% Similarity=0.226 Sum_probs=98.7
Q ss_pred ccCCCCccccccchHHHHHHHHHHHhccccCcccccccCCCCceEEEEcCCCCcHHHHHHHHHHhcCCe-----------
Q 016911 201 RGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT----------- 269 (380)
Q Consensus 201 ~~~p~~~~~~l~Gl~~~k~~L~~~l~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~l~~~----------- 269 (380)
...+..+|++++|++.+++.|+..+... +.+..+||+||+|||||++|+++|+.++..
T Consensus 5 ~kyRP~~f~eivGq~~i~~~L~~~i~~~-----------r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C 73 (584)
T PRK14952 5 RKYRPATFAEVVGQEHVTEPLSSALDAG-----------RINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVC 73 (584)
T ss_pred HHhCCCcHHHhcCcHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCccccc
Confidence 4456778999999999999999876431 233458999999999999999999988531
Q ss_pred ---------------EEEEecchhhhhhccchHHHHHHHHHHHH----hcCCeEEEEcCcchhhhhccccchhhHHHHHH
Q 016911 270 ---------------FFNISASSVVSKWRGDSEKLIKVLFELAR----HHAPSTIFLDEIDAIISQRGEARSEHEASRRL 330 (380)
Q Consensus 270 ---------------~v~v~~s~l~~~~~ge~e~~l~~lf~~A~----~~~p~ILfIDEiD~l~~~~~~~~~~~~~~~~i 330 (380)
++.++.+.. ..-..++.+...+. .....|++|||+|.+... .
T Consensus 74 ~~C~~i~~~~~~~~dvieidaas~------~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~-------------A 134 (584)
T PRK14952 74 ESCVALAPNGPGSIDVVELDAASH------GGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTA-------------G 134 (584)
T ss_pred HHHHHhhcccCCCceEEEeccccc------cCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCHH-------------H
Confidence 223332211 01222333332222 234569999999988432 4
Q ss_pred HHHHHHHhcCCccCCCcEEEEEEeCCCCCchHHHHhcccceeEecCCC
Q 016911 331 KTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRVSFSLIA 378 (380)
Q Consensus 331 ~~~Ll~~ldgl~~~~~~VlVIatTN~~~~Ld~aLlrRF~~~I~~plPd 378 (380)
.+.|+..|+ .....+++|.+|+.++.+.+++++|+ ..++|..++
T Consensus 135 ~NALLK~LE---Epp~~~~fIL~tte~~kll~TI~SRc-~~~~F~~l~ 178 (584)
T PRK14952 135 FNALLKIVE---EPPEHLIFIFATTEPEKVLPTIRSRT-HHYPFRLLP 178 (584)
T ss_pred HHHHHHHHh---cCCCCeEEEEEeCChHhhHHHHHHhc-eEEEeeCCC
Confidence 566777774 34556778888888889999999997 457776654
No 86
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.30 E-value=1.9e-11 Score=127.51 Aligned_cols=145 Identities=23% Similarity=0.312 Sum_probs=99.4
Q ss_pred hccCCCCccccccchHHHHHHHHHHHhccccCcccccccCCCCceEEEEcCCCCcHHHHHHHHHHhcCC-----------
Q 016911 200 IRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKT----------- 268 (380)
Q Consensus 200 ~~~~p~~~~~~l~Gl~~~k~~L~~~l~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~l~~----------- 268 (380)
+...+...|++++|++.+++.|+..+... +.+..+||+|||||||||+|+++|+.++.
T Consensus 5 ~~KyRP~~~~dvvGq~~v~~~L~~~i~~~-----------~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C 73 (504)
T PRK14963 5 YQRARPITFDEVVGQEHVKEVLLAALRQG-----------RLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGEC 73 (504)
T ss_pred HHhhCCCCHHHhcChHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcC
Confidence 34557778999999999999998876431 23355799999999999999999998853
Q ss_pred ------------eEEEEecchhhhhhccchHHHHHHHHHHHH----hcCCeEEEEcCcchhhhhccccchhhHHHHHHHH
Q 016911 269 ------------TFFNISASSVVSKWRGDSEKLIKVLFELAR----HHAPSTIFLDEIDAIISQRGEARSEHEASRRLKT 332 (380)
Q Consensus 269 ------------~~v~v~~s~l~~~~~ge~e~~l~~lf~~A~----~~~p~ILfIDEiD~l~~~~~~~~~~~~~~~~i~~ 332 (380)
.++.++.+. ...-..++.+...+. ...+.|++|||+|.+.. ...+
T Consensus 74 ~sc~~i~~~~h~dv~el~~~~------~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls~-------------~a~n 134 (504)
T PRK14963 74 ESCLAVRRGAHPDVLEIDAAS------NNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMSK-------------SAFN 134 (504)
T ss_pred hhhHHHhcCCCCceEEecccc------cCCHHHHHHHHHHHhhccccCCCeEEEEECccccCH-------------HHHH
Confidence 134444321 111233444433332 23457999999987632 2345
Q ss_pred HHHHHhcCCccCCCcEEEEEEeCCCCCchHHHHhcccceeEecCCC
Q 016911 333 ELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRVSFSLIA 378 (380)
Q Consensus 333 ~Ll~~ldgl~~~~~~VlVIatTN~~~~Ld~aLlrRF~~~I~~plPd 378 (380)
.|+..++. ....+++|.+|+.+..+.+++.+|+. .++|..|+
T Consensus 135 aLLk~LEe---p~~~t~~Il~t~~~~kl~~~I~SRc~-~~~f~~ls 176 (504)
T PRK14963 135 ALLKTLEE---PPEHVIFILATTEPEKMPPTILSRTQ-HFRFRRLT 176 (504)
T ss_pred HHHHHHHh---CCCCEEEEEEcCChhhCChHHhcceE-EEEecCCC
Confidence 67776643 34456777788888999999999985 57777665
No 87
>PHA02244 ATPase-like protein
Probab=99.30 E-value=2.1e-11 Score=121.73 Aligned_cols=127 Identities=24% Similarity=0.266 Sum_probs=80.0
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHhcCCeEEEEecchhhhhhcc---chHHHHHHHHHHHHhcCCeEEEEcCcchhhhh
Q 016911 240 SPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRG---DSEKLIKVLFELARHHAPSTIFLDEIDAIISQ 316 (380)
Q Consensus 240 ~~~~~vLL~GppGtGKT~la~ala~~l~~~~v~v~~s~l~~~~~g---e~e~~l~~lf~~A~~~~p~ILfIDEiD~l~~~ 316 (380)
..+.++||+||||||||++|+++|..++.+++.++...-.....| ........-+..|. ..+++|+|||++.+.++
T Consensus 117 ~~~~PVLL~GppGtGKTtLA~aLA~~lg~pfv~In~l~d~~~L~G~i~~~g~~~dgpLl~A~-~~GgvLiLDEId~a~p~ 195 (383)
T PHA02244 117 NANIPVFLKGGAGSGKNHIAEQIAEALDLDFYFMNAIMDEFELKGFIDANGKFHETPFYEAF-KKGGLFFIDEIDASIPE 195 (383)
T ss_pred hcCCCEEEECCCCCCHHHHHHHHHHHhCCCEEEEecChHHHhhcccccccccccchHHHHHh-hcCCEEEEeCcCcCCHH
Confidence 345789999999999999999999999999999884311111111 11111111122222 23679999999987543
Q ss_pred ccccchhhHHHHHHHHHHH-----HHhcCCccCCCcEEEEEEeCCC-----------CCchHHHHhcccceeEecCCC
Q 016911 317 RGEARSEHEASRRLKTELL-----IQMDGLTQSDELVFVLAATNLP-----------WELDAAMLRRLEKRVSFSLIA 378 (380)
Q Consensus 317 ~~~~~~~~~~~~~i~~~Ll-----~~ldgl~~~~~~VlVIatTN~~-----------~~Ld~aLlrRF~~~I~~plPd 378 (380)
.. ..++.++ ...++......++.+|+|+|.+ ..+++++++||- .++|+.|+
T Consensus 196 vq----------~~L~~lLd~r~l~l~g~~i~~h~~FRlIATsN~~~~G~~~~y~G~k~L~~AllDRFv-~I~~dyp~ 262 (383)
T PHA02244 196 AL----------IIINSAIANKFFDFADERVTAHEDFRVISAGNTLGKGADHIYVARNKIDGATLDRFA-PIEFDYDE 262 (383)
T ss_pred HH----------HHHHHHhccCeEEecCcEEecCCCEEEEEeeCCCccCcccccCCCcccCHHHHhhcE-EeeCCCCc
Confidence 21 1111222 1122222223568899999984 358999999995 58888875
No 88
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=99.29 E-value=2e-11 Score=133.50 Aligned_cols=148 Identities=21% Similarity=0.207 Sum_probs=98.1
Q ss_pred ccCCCCccccccchHHHHHHHHHHHhccccCcccccccCCCCceEEEEcCCCCcHHHHHHHHHHhcCCe-----------
Q 016911 201 RGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT----------- 269 (380)
Q Consensus 201 ~~~p~~~~~~l~Gl~~~k~~L~~~l~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~l~~~----------- 269 (380)
...+..+|++|+|++.+++.|+..+..- +....+||+||+|||||++|+.+|+.++..
T Consensus 7 ~KyRP~~f~eiiGqe~v~~~L~~~i~~~-----------ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C 75 (824)
T PRK07764 7 RRYRPATFAEVIGQEHVTEPLSTALDSG-----------RINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGEC 75 (824)
T ss_pred HHhCCCCHHHhcCcHHHHHHHHHHHHhC-----------CCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCccc
Confidence 3456778999999999999998876431 233568999999999999999999998531
Q ss_pred ---------------EEEEecchhhhhhccchHHHHHHHHHHHHhcCCeEEEEcCcchhhhhccccchhhHHHHHHHHHH
Q 016911 270 ---------------FFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTEL 334 (380)
Q Consensus 270 ---------------~v~v~~s~l~~~~~ge~e~~l~~lf~~A~~~~p~ILfIDEiD~l~~~~~~~~~~~~~~~~i~~~L 334 (380)
++.++..... .+.+.......++.........|+||||+|.|.. ...+.|
T Consensus 76 ~sC~~~~~g~~~~~dv~eidaas~~--~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~-------------~a~NaL 140 (824)
T PRK07764 76 DSCVALAPGGPGSLDVTEIDAASHG--GVDDARELRERAFFAPAESRYKIFIIDEAHMVTP-------------QGFNAL 140 (824)
T ss_pred HHHHHHHcCCCCCCcEEEecccccC--CHHHHHHHHHHHHhchhcCCceEEEEechhhcCH-------------HHHHHH
Confidence 2223221110 0111112222222222234567999999999843 245668
Q ss_pred HHHhcCCccCCCcEEEEEEeCCCCCchHHHHhcccceeEecCCC
Q 016911 335 LIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRVSFSLIA 378 (380)
Q Consensus 335 l~~ldgl~~~~~~VlVIatTN~~~~Ld~aLlrRF~~~I~~plPd 378 (380)
++.|+. ....+++|++|+.++.|.++|++|+. .++|..++
T Consensus 141 LK~LEE---pP~~~~fIl~tt~~~kLl~TIrSRc~-~v~F~~l~ 180 (824)
T PRK07764 141 LKIVEE---PPEHLKFIFATTEPDKVIGTIRSRTH-HYPFRLVP 180 (824)
T ss_pred HHHHhC---CCCCeEEEEEeCChhhhhHHHHhhee-EEEeeCCC
Confidence 887753 34557778888888889999999984 56776553
No 89
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=99.29 E-value=2.7e-11 Score=126.23 Aligned_cols=143 Identities=20% Similarity=0.276 Sum_probs=99.2
Q ss_pred cCCCCccccccchHHHHHHHHHHHhccccCcccccccCCCCceEEEEcCCCCcHHHHHHHHHHhcCCe------------
Q 016911 202 GSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT------------ 269 (380)
Q Consensus 202 ~~p~~~~~~l~Gl~~~k~~L~~~l~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~l~~~------------ 269 (380)
..+...|++++|++.+++.|...+..- +.+..+||+||||+|||++|+++|+.++..
T Consensus 14 kyRP~~f~dliGq~~vv~~L~~ai~~~-----------ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C 82 (507)
T PRK06645 14 KYRPSNFAELQGQEVLVKVLSYTILND-----------RLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTC 82 (507)
T ss_pred hhCCCCHHHhcCcHHHHHHHHHHHHcC-----------CCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCC
Confidence 356778999999999999888765331 334689999999999999999999998542
Q ss_pred ----------------EEEEecchhhhhhccchHHHHHHHHHHHHhc----CCeEEEEcCcchhhhhccccchhhHHHHH
Q 016911 270 ----------------FFNISASSVVSKWRGDSEKLIKVLFELARHH----APSTIFLDEIDAIISQRGEARSEHEASRR 329 (380)
Q Consensus 270 ----------------~v~v~~s~l~~~~~ge~e~~l~~lf~~A~~~----~p~ILfIDEiD~l~~~~~~~~~~~~~~~~ 329 (380)
++++++.. ......++.+.+.+... ...|++|||+|.+.. .
T Consensus 83 ~~C~~C~~i~~~~h~Dv~eidaas------~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~-------------~ 143 (507)
T PRK06645 83 EQCTNCISFNNHNHPDIIEIDAAS------KTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSK-------------G 143 (507)
T ss_pred CCChHHHHHhcCCCCcEEEeeccC------CCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCH-------------H
Confidence 12222111 11234556666555432 356999999998842 2
Q ss_pred HHHHHHHHhcCCccCCCcEEEEEEeCCCCCchHHHHhcccceeEecCCC
Q 016911 330 LKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRVSFSLIA 378 (380)
Q Consensus 330 i~~~Ll~~ldgl~~~~~~VlVIatTN~~~~Ld~aLlrRF~~~I~~plPd 378 (380)
..+.|+..++ .....+++|.+|+.++.+.+++++|+. .++|..++
T Consensus 144 a~naLLk~LE---epp~~~vfI~aTte~~kI~~tI~SRc~-~~ef~~ls 188 (507)
T PRK06645 144 AFNALLKTLE---EPPPHIIFIFATTEVQKIPATIISRCQ-RYDLRRLS 188 (507)
T ss_pred HHHHHHHHHh---hcCCCEEEEEEeCChHHhhHHHHhcce-EEEccCCC
Confidence 3455666664 344557777788888889999999984 56676554
No 90
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.28 E-value=1.6e-11 Score=128.74 Aligned_cols=143 Identities=20% Similarity=0.268 Sum_probs=98.0
Q ss_pred cCCCCccccccchHHHHHHHHHHHhccccCcccccccCCCCceEEEEcCCCCcHHHHHHHHHHhcCCe------------
Q 016911 202 GSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT------------ 269 (380)
Q Consensus 202 ~~p~~~~~~l~Gl~~~k~~L~~~l~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~l~~~------------ 269 (380)
..+...|++++|++.+++.+...+... +.+..+||+||||+|||++|+.+|+.++..
T Consensus 9 k~rP~~f~divGq~~v~~~L~~~i~~~-----------~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~ 77 (527)
T PRK14969 9 KWRPKSFSELVGQEHVVRALTNALEQQ-----------RLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCS 77 (527)
T ss_pred HhCCCcHHHhcCcHHHHHHHHHHHHcC-----------CCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCH
Confidence 345668999999999999988876431 234568999999999999999999998542
Q ss_pred ------------EEEEecchhhhhhccchHHHHHHHHHHHHh----cCCeEEEEcCcchhhhhccccchhhHHHHHHHHH
Q 016911 270 ------------FFNISASSVVSKWRGDSEKLIKVLFELARH----HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTE 333 (380)
Q Consensus 270 ------------~v~v~~s~l~~~~~ge~e~~l~~lf~~A~~----~~p~ILfIDEiD~l~~~~~~~~~~~~~~~~i~~~ 333 (380)
++.++.+. ......++.+...+.. ....|++|||+|.+.. ...+.
T Consensus 78 ~C~~i~~~~~~d~~ei~~~~------~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls~-------------~a~na 138 (527)
T PRK14969 78 ACLEIDSGRFVDLIEVDAAS------NTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLSK-------------SAFNA 138 (527)
T ss_pred HHHHHhcCCCCceeEeeccc------cCCHHHHHHHHHHHhhCcccCCceEEEEcCcccCCH-------------HHHHH
Confidence 22222211 1122344555554432 2346999999998843 23456
Q ss_pred HHHHhcCCccCCCcEEEEEEeCCCCCchHHHHhcccceeEecCCC
Q 016911 334 LLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRVSFSLIA 378 (380)
Q Consensus 334 Ll~~ldgl~~~~~~VlVIatTN~~~~Ld~aLlrRF~~~I~~plPd 378 (380)
|+..++. ..+.+.+|.+|+.++.+.+.+++|+ ..++|..|+
T Consensus 139 LLK~LEe---pp~~~~fIL~t~d~~kil~tI~SRc-~~~~f~~l~ 179 (527)
T PRK14969 139 MLKTLEE---PPEHVKFILATTDPQKIPVTVLSRC-LQFNLKQMP 179 (527)
T ss_pred HHHHHhC---CCCCEEEEEEeCChhhCchhHHHHH-HHHhcCCCC
Confidence 7777743 4455778888888888888899998 456666554
No 91
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=99.28 E-value=2.5e-11 Score=128.20 Aligned_cols=145 Identities=25% Similarity=0.330 Sum_probs=102.0
Q ss_pred hccCCCCccccccchHHHHHHHHHHHhccccCcccccccCCCCceEEEEcCCCCcHHHHHHHHHHhcCC-----------
Q 016911 200 IRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKT----------- 268 (380)
Q Consensus 200 ~~~~p~~~~~~l~Gl~~~k~~L~~~l~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~l~~----------- 268 (380)
+...+..+|++++|++.+++.|+..+... +.+..+||+||+|||||++|+.+|+.++.
T Consensus 7 ~~k~rP~~f~~viGq~~v~~~L~~~i~~~-----------~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~ 75 (559)
T PRK05563 7 YRKWRPQTFEDVVGQEHITKTLKNAIKQG-----------KISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNE 75 (559)
T ss_pred HHHhCCCcHHhccCcHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCc
Confidence 44567788999999999999998876431 33467899999999999999999998742
Q ss_pred -------------eEEEEecchhhhhhccchHHHHHHHHHHHHh----cCCeEEEEcCcchhhhhccccchhhHHHHHHH
Q 016911 269 -------------TFFNISASSVVSKWRGDSEKLIKVLFELARH----HAPSTIFLDEIDAIISQRGEARSEHEASRRLK 331 (380)
Q Consensus 269 -------------~~v~v~~s~l~~~~~ge~e~~l~~lf~~A~~----~~p~ILfIDEiD~l~~~~~~~~~~~~~~~~i~ 331 (380)
.++.++++. ...-..++.+...+.. ....|++|||+|.+.. ...
T Consensus 76 C~~C~~i~~g~~~dv~eidaas------~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~-------------~a~ 136 (559)
T PRK05563 76 CEICKAITNGSLMDVIEIDAAS------NNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLST-------------GAF 136 (559)
T ss_pred cHHHHHHhcCCCCCeEEeeccc------cCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCH-------------HHH
Confidence 233343321 1223445555555442 2356999999998842 234
Q ss_pred HHHHHHhcCCccCCCcEEEEEEeCCCCCchHHHHhcccceeEecCCC
Q 016911 332 TELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRVSFSLIA 378 (380)
Q Consensus 332 ~~Ll~~ldgl~~~~~~VlVIatTN~~~~Ld~aLlrRF~~~I~~plPd 378 (380)
+.|+..++. ....+++|.+|+.++.+.+++++|+. .++|+.|+
T Consensus 137 naLLKtLEe---pp~~~ifIlatt~~~ki~~tI~SRc~-~~~f~~~~ 179 (559)
T PRK05563 137 NALLKTLEE---PPAHVIFILATTEPHKIPATILSRCQ-RFDFKRIS 179 (559)
T ss_pred HHHHHHhcC---CCCCeEEEEEeCChhhCcHHHHhHhe-EEecCCCC
Confidence 567777743 34456677778888999999999985 46777665
No 92
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=99.28 E-value=1.7e-11 Score=118.32 Aligned_cols=144 Identities=24% Similarity=0.257 Sum_probs=98.0
Q ss_pred CCCCccccccchHHHHHHHHHHHhccccCcccccccCCCCceEEEEcCCCCcHHHHHHHHHHhcCC------eEEEEecc
Q 016911 203 SPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKT------TFFNISAS 276 (380)
Q Consensus 203 ~p~~~~~~l~Gl~~~k~~L~~~l~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~l~~------~~v~v~~s 276 (380)
.+..+++++.|++.+++.|+..+.. .-..++|||||||||||+.|+++|.+++. .+.+.+.+
T Consensus 30 YrPkt~de~~gQe~vV~~L~~a~~~------------~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaS 97 (346)
T KOG0989|consen 30 YRPKTFDELAGQEHVVQVLKNALLR------------RILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNAS 97 (346)
T ss_pred hCCCcHHhhcchHHHHHHHHHHHhh------------cCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhccc
Confidence 4566799999999999999988744 22368999999999999999999999965 22334444
Q ss_pred hhhhhhccchHHHHHHHHHHHHhc---------C-CeEEEEcCcchhhhhccccchhhHHHHHHHHHHHHHhcCCccCCC
Q 016911 277 SVVSKWRGDSEKLIKVLFELARHH---------A-PSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDE 346 (380)
Q Consensus 277 ~l~~~~~ge~e~~l~~lf~~A~~~---------~-p~ILfIDEiD~l~~~~~~~~~~~~~~~~i~~~Ll~~ldgl~~~~~ 346 (380)
+..+..+ ....++. |...... + ..|++|||.|.+..+ ....|...|+.. ..
T Consensus 98 derGisv--vr~Kik~-fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsd-------------aq~aLrr~mE~~---s~ 158 (346)
T KOG0989|consen 98 DERGISV--VREKIKN-FAKLTVLLKRSDGYPCPPFKIIILDECDSMTSD-------------AQAALRRTMEDF---SR 158 (346)
T ss_pred ccccccc--hhhhhcC-HHHHhhccccccCCCCCcceEEEEechhhhhHH-------------HHHHHHHHHhcc---cc
Confidence 4433321 1112221 2222211 1 269999999998543 345566677543 44
Q ss_pred cEEEEEEeCCCCCchHHHHhcccceeEecCC
Q 016911 347 LVFVLAATNLPWELDAAMLRRLEKRVSFSLI 377 (380)
Q Consensus 347 ~VlVIatTN~~~~Ld~aLlrRF~~~I~~plP 377 (380)
.+.+|..||..+.+...+.+|+.+...=+++
T Consensus 159 ~trFiLIcnylsrii~pi~SRC~KfrFk~L~ 189 (346)
T KOG0989|consen 159 TTRFILICNYLSRIIRPLVSRCQKFRFKKLK 189 (346)
T ss_pred ceEEEEEcCChhhCChHHHhhHHHhcCCCcc
Confidence 5678999999999999999988654333333
No 93
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=99.27 E-value=2.8e-11 Score=100.62 Aligned_cols=128 Identities=30% Similarity=0.423 Sum_probs=83.8
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhcCCe---EEEEecchhhhh--------------hccchHHHHHHHHHHHHhcCCeE
Q 016911 242 WKGILLFGPPGTGKTMLAKAVATECKTT---FFNISASSVVSK--------------WRGDSEKLIKVLFELARHHAPST 304 (380)
Q Consensus 242 ~~~vLL~GppGtGKT~la~ala~~l~~~---~v~v~~s~l~~~--------------~~ge~e~~l~~lf~~A~~~~p~I 304 (380)
+.+++|+||||||||++++.+|..+... ++.+++...... ............+..+....+.+
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 81 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPDV 81 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHHHhcCCCE
Confidence 4689999999999999999999999764 788887654322 11344556677888888877899
Q ss_pred EEEcCcchhhhhccccchhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCC-CCCchHHHHhcccceeEecCC
Q 016911 305 IFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNL-PWELDAAMLRRLEKRVSFSLI 377 (380)
Q Consensus 305 LfIDEiD~l~~~~~~~~~~~~~~~~i~~~Ll~~ldgl~~~~~~VlVIatTN~-~~~Ld~aLlrRF~~~I~~plP 377 (380)
|++||++.+......... ........... ........+|+++|. ....+..+.+|++..+.++.+
T Consensus 82 iiiDei~~~~~~~~~~~~----~~~~~~~~~~~----~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (148)
T smart00382 82 LILDEITSLLDAEQEALL----LLLEELRLLLL----LKSEKNLTVILTTNDEKDLGPALLRRRFDRRIVLLLI 147 (148)
T ss_pred EEEECCcccCCHHHHHHH----HhhhhhHHHHH----HHhcCCCEEEEEeCCCccCchhhhhhccceEEEecCC
Confidence 999999988654321100 00000000011 112334668888886 344566666688888887665
No 94
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.27 E-value=3.3e-11 Score=124.93 Aligned_cols=143 Identities=22% Similarity=0.264 Sum_probs=100.0
Q ss_pred cCCCCccccccchHHHHHHHHHHHhccccCcccccccCCCCceEEEEcCCCCcHHHHHHHHHHhcCC-------------
Q 016911 202 GSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKT------------- 268 (380)
Q Consensus 202 ~~p~~~~~~l~Gl~~~k~~L~~~l~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~l~~------------- 268 (380)
..+..+|++++|++.+++.|...+.. .+.+.++||+||+|+||||+|+.+|..++.
T Consensus 6 KyRP~~f~dliGQe~vv~~L~~a~~~-----------~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~ 74 (491)
T PRK14964 6 KYRPSSFKDLVGQDVLVRILRNAFTL-----------NKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCH 74 (491)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHHc-----------CCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccH
Confidence 34667899999999999998876533 133468999999999999999999987632
Q ss_pred -----------eEEEEecchhhhhhccchHHHHHHHHHHHHh----cCCeEEEEcCcchhhhhccccchhhHHHHHHHHH
Q 016911 269 -----------TFFNISASSVVSKWRGDSEKLIKVLFELARH----HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTE 333 (380)
Q Consensus 269 -----------~~v~v~~s~l~~~~~ge~e~~l~~lf~~A~~----~~p~ILfIDEiD~l~~~~~~~~~~~~~~~~i~~~ 333 (380)
.++++++++- ..-..++.+.+.+.. ....|++|||+|.+.. ...+.
T Consensus 75 ~C~~i~~~~~~Dv~eidaas~------~~vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls~-------------~A~Na 135 (491)
T PRK14964 75 NCISIKNSNHPDVIEIDAASN------TSVDDIKVILENSCYLPISSKFKVYIIDEVHMLSN-------------SAFNA 135 (491)
T ss_pred HHHHHhccCCCCEEEEecccC------CCHHHHHHHHHHHHhccccCCceEEEEeChHhCCH-------------HHHHH
Confidence 3455555421 122344555554432 2356999999998843 23456
Q ss_pred HHHHhcCCccCCCcEEEEEEeCCCCCchHHHHhcccceeEecCCC
Q 016911 334 LLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRVSFSLIA 378 (380)
Q Consensus 334 Ll~~ldgl~~~~~~VlVIatTN~~~~Ld~aLlrRF~~~I~~plPd 378 (380)
|+..++. ....+.+|.+|+.+..+.+++++|+. .++|..++
T Consensus 136 LLK~LEe---Pp~~v~fIlatte~~Kl~~tI~SRc~-~~~f~~l~ 176 (491)
T PRK14964 136 LLKTLEE---PAPHVKFILATTEVKKIPVTIISRCQ-RFDLQKIP 176 (491)
T ss_pred HHHHHhC---CCCCeEEEEEeCChHHHHHHHHHhhe-eeeccccc
Confidence 7777753 34457777888888889999999984 46665554
No 95
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.26 E-value=4.9e-11 Score=125.16 Aligned_cols=142 Identities=19% Similarity=0.239 Sum_probs=95.5
Q ss_pred CCCCccccccchHHHHHHHHHHHhccccCcccccccCCCCceEEEEcCCCCcHHHHHHHHHHhcCC--------------
Q 016911 203 SPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKT-------------- 268 (380)
Q Consensus 203 ~p~~~~~~l~Gl~~~k~~L~~~l~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~l~~-------------- 268 (380)
.+...|++++|++.+++.|...+... +.+..+||+||||+|||++|+.+|+.++.
T Consensus 10 yRP~~f~diiGq~~~v~~L~~~i~~~-----------rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~s 78 (546)
T PRK14957 10 YRPQSFAEVAGQQHALNSLVHALETQ-----------KVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCEN 78 (546)
T ss_pred HCcCcHHHhcCcHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHH
Confidence 45678999999999999888776431 23356899999999999999999998853
Q ss_pred ----------eEEEEecchhhhhhccchHHHHHHHHHHHH----hcCCeEEEEcCcchhhhhccccchhhHHHHHHHHHH
Q 016911 269 ----------TFFNISASSVVSKWRGDSEKLIKVLFELAR----HHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTEL 334 (380)
Q Consensus 269 ----------~~v~v~~s~l~~~~~ge~e~~l~~lf~~A~----~~~p~ILfIDEiD~l~~~~~~~~~~~~~~~~i~~~L 334 (380)
.++.++...- . .-..++.+...+. .....|++|||+|.+.. ...+.|
T Consensus 79 C~~i~~~~~~dlieidaas~----~--gvd~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~-------------~a~naL 139 (546)
T PRK14957 79 CVAINNNSFIDLIEIDAASR----T--GVEETKEILDNIQYMPSQGRYKVYLIDEVHMLSK-------------QSFNAL 139 (546)
T ss_pred HHHHhcCCCCceEEeecccc----c--CHHHHHHHHHHHHhhhhcCCcEEEEEechhhccH-------------HHHHHH
Confidence 2233332111 0 1112233333322 23456999999998843 244567
Q ss_pred HHHhcCCccCCCcEEEEEEeCCCCCchHHHHhcccceeEecCCC
Q 016911 335 LIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRVSFSLIA 378 (380)
Q Consensus 335 l~~ldgl~~~~~~VlVIatTN~~~~Ld~aLlrRF~~~I~~plPd 378 (380)
+..++. ..+.+.+|.+|+.+..+.+++++|+ ..++|..++
T Consensus 140 LK~LEe---pp~~v~fIL~Ttd~~kil~tI~SRc-~~~~f~~Ls 179 (546)
T PRK14957 140 LKTLEE---PPEYVKFILATTDYHKIPVTILSRC-IQLHLKHIS 179 (546)
T ss_pred HHHHhc---CCCCceEEEEECChhhhhhhHHHhe-eeEEeCCCC
Confidence 777753 3445667777777888888899998 467776654
No 96
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=99.26 E-value=3.3e-11 Score=128.48 Aligned_cols=142 Identities=20% Similarity=0.259 Sum_probs=97.2
Q ss_pred cCCCCccccccchHHHHHHHHHHHhccccCcccccccCCCCceEEEEcCCCCcHHHHHHHHHHhcCCe------------
Q 016911 202 GSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT------------ 269 (380)
Q Consensus 202 ~~p~~~~~~l~Gl~~~k~~L~~~l~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~l~~~------------ 269 (380)
..+..+|++|+|++.+++.|...+... +.+..+||+||+|+|||++|+++|+.++..
T Consensus 9 KYRP~tFddIIGQe~vv~~L~~ai~~~-----------rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~ 77 (709)
T PRK08691 9 KWRPKTFADLVGQEHVVKALQNALDEG-----------RLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQ 77 (709)
T ss_pred HhCCCCHHHHcCcHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccH
Confidence 456778999999999999999876431 334679999999999999999999987542
Q ss_pred ------------EEEEecchhhhhhccchHHHHHHHHHHHH----hcCCeEEEEcCcchhhhhccccchhhHHHHHHHHH
Q 016911 270 ------------FFNISASSVVSKWRGDSEKLIKVLFELAR----HHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTE 333 (380)
Q Consensus 270 ------------~v~v~~s~l~~~~~ge~e~~l~~lf~~A~----~~~p~ILfIDEiD~l~~~~~~~~~~~~~~~~i~~~ 333 (380)
++.++... ......++.++..+. .....|++|||+|.+.. ...+.
T Consensus 78 sCr~i~~g~~~DvlEidaAs------~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~-------------~A~NA 138 (709)
T PRK08691 78 SCTQIDAGRYVDLLEIDAAS------NTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSK-------------SAFNA 138 (709)
T ss_pred HHHHHhccCccceEEEeccc------cCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccCH-------------HHHHH
Confidence 12222111 112234555555432 22347999999998732 23456
Q ss_pred HHHHhcCCccCCCcEEEEEEeCCCCCchHHHHhcccceeEecCC
Q 016911 334 LLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRVSFSLI 377 (380)
Q Consensus 334 Ll~~ldgl~~~~~~VlVIatTN~~~~Ld~aLlrRF~~~I~~plP 377 (380)
|+..|+. ..+.+.+|.+|+.+..+.+.+++|+. .+.|+.+
T Consensus 139 LLKtLEE---Pp~~v~fILaTtd~~kL~~TIrSRC~-~f~f~~L 178 (709)
T PRK08691 139 MLKTLEE---PPEHVKFILATTDPHKVPVTVLSRCL-QFVLRNM 178 (709)
T ss_pred HHHHHHh---CCCCcEEEEEeCCccccchHHHHHHh-hhhcCCC
Confidence 7777753 34456788888999999999999983 3444443
No 97
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.26 E-value=5.3e-11 Score=129.54 Aligned_cols=152 Identities=24% Similarity=0.279 Sum_probs=101.0
Q ss_pred ccccchHHHHHHHHHHHhccccCcccccccCCCCceEEEEcCCCCcHHHHHHHHHHhcCCeEEEEecchhhhh-------
Q 016911 209 ESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSK------- 281 (380)
Q Consensus 209 ~~l~Gl~~~k~~L~~~l~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~l~~~~v~v~~s~l~~~------- 281 (380)
..++|++.+++.+...+.....- +....+|...+||+||||||||++|+++|..++.+++.++++++...
T Consensus 454 ~~v~GQ~~ai~~l~~~i~~~~~g---~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~~~~~~~d~se~~~~~~~~~li 530 (731)
T TIGR02639 454 AKIFGQDEAIDSLVSSIKRSRAG---LGNPNKPVGSFLFTGPTGVGKTELAKQLAEALGVHLERFDMSEYMEKHTVSRLI 530 (731)
T ss_pred cceeCcHHHHHHHHHHHHHHhcC---CCCCCCCceeEEEECCCCccHHHHHHHHHHHhcCCeEEEeCchhhhcccHHHHh
Confidence 45677888777777665432110 01112344568999999999999999999999999999999876431
Q ss_pred -----hccchHHHHHHHHHHHHhcCCeEEEEcCcchhhhhccccchhhHHHHHHHHHHHHHhcCCc--------cCCCcE
Q 016911 282 -----WRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT--------QSDELV 348 (380)
Q Consensus 282 -----~~ge~e~~l~~lf~~A~~~~p~ILfIDEiD~l~~~~~~~~~~~~~~~~i~~~Ll~~ldgl~--------~~~~~V 348 (380)
|+|..+ ...+....+....+||+|||+|++.++ +.+.|+..++.-. ..-+++
T Consensus 531 g~~~gyvg~~~--~~~l~~~~~~~p~~VvllDEieka~~~-------------~~~~Ll~~ld~g~~~d~~g~~vd~~~~ 595 (731)
T TIGR02639 531 GAPPGYVGFEQ--GGLLTEAVRKHPHCVLLLDEIEKAHPD-------------IYNILLQVMDYATLTDNNGRKADFRNV 595 (731)
T ss_pred cCCCCCcccch--hhHHHHHHHhCCCeEEEEechhhcCHH-------------HHHHHHHhhccCeeecCCCcccCCCCC
Confidence 222211 122344445566789999999988442 4455666665421 112457
Q ss_pred EEEEEeCCCC-------------------------CchHHHHhcccceeEecCCC
Q 016911 349 FVLAATNLPW-------------------------ELDAAMLRRLEKRVSFSLIA 378 (380)
Q Consensus 349 lVIatTN~~~-------------------------~Ld~aLlrRF~~~I~~plPd 378 (380)
++|+|||... .+.|+++.||+.++.|...+
T Consensus 596 iii~Tsn~g~~~~~~~~~~f~~~~~~~~~~~~~~~~f~pef~~Rid~Vi~F~pLs 650 (731)
T TIGR02639 596 ILIMTSNAGASEMSKPPIGFGSENVESKSDKAIKKLFSPEFRNRLDAIIHFNPLS 650 (731)
T ss_pred EEEECCCcchhhhhhccCCcchhhhHHHHHHHHHhhcChHHHhcCCeEEEcCCCC
Confidence 7899998752 14678888999988887654
No 98
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=99.26 E-value=3.9e-12 Score=109.64 Aligned_cols=110 Identities=29% Similarity=0.361 Sum_probs=68.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcCCeEEEEecchhhhh--hccchHHH------H-HHHHHHHHhcCCeEEEEcCcchhh
Q 016911 244 GILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSK--WRGDSEKL------I-KVLFELARHHAPSTIFLDEIDAII 314 (380)
Q Consensus 244 ~vLL~GppGtGKT~la~ala~~l~~~~v~v~~s~l~~~--~~ge~e~~------l-~~lf~~A~~~~p~ILfIDEiD~l~ 314 (380)
+|+|+||||||||++++.+|..++.+++.++++..... ..|..... . ..+..... .+.+++|||++...
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~~~~l~~a~~--~~~il~lDEin~a~ 78 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGRPVIRINCSSDTTEEDLIGSYDPSNGQFEFKDGPLVRAMR--KGGILVLDEINRAP 78 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTCEEEEEE-TTTSTHHHHHCEEET-TTTTCEEE-CCCTTHH--EEEEEEESSCGG--
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhcceEEEEeccccccccceeeeeeccccccccccccccccc--ceeEEEECCcccCC
Confidence 58999999999999999999999999999888753221 11110000 0 00000111 36899999998763
Q ss_pred hhccccchhhHHHHHHHHHHHHHhcCCcc----------CCC------cEEEEEEeCCCC----CchHHHHhcc
Q 016911 315 SQRGEARSEHEASRRLKTELLIQMDGLTQ----------SDE------LVFVLAATNLPW----ELDAAMLRRL 368 (380)
Q Consensus 315 ~~~~~~~~~~~~~~~i~~~Ll~~ldgl~~----------~~~------~VlVIatTN~~~----~Ld~aLlrRF 368 (380)
+ .++..|+..++.-.. ... .+.+|+|+|... .+++++++||
T Consensus 79 ~-------------~v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~~~~~~l~~al~~Rf 139 (139)
T PF07728_consen 79 P-------------EVLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRDKGRKELSPALLDRF 139 (139)
T ss_dssp H-------------HHHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST--TTTTCHHHHTT-
T ss_pred H-------------HHHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCCCCcCcCCHHHHhhC
Confidence 2 233444444432110 111 388999999998 7999999998
No 99
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.26 E-value=7.1e-11 Score=115.94 Aligned_cols=148 Identities=22% Similarity=0.253 Sum_probs=93.5
Q ss_pred cCCCCccccccchHHHHHHHHHHHhccccCcccccccCCCCceEEEEcCCCCcHHHHHHHHHHhcC-----CeEEEEecc
Q 016911 202 GSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECK-----TTFFNISAS 276 (380)
Q Consensus 202 ~~p~~~~~~l~Gl~~~k~~L~~~l~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~l~-----~~~v~v~~s 276 (380)
..+...+++++|.+.+++.+...+.. ....+++|+||||||||++|+++++++. .+++.++++
T Consensus 8 ky~P~~~~~~~g~~~~~~~L~~~~~~------------~~~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~~ 75 (337)
T PRK12402 8 KYRPALLEDILGQDEVVERLSRAVDS------------PNLPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNVA 75 (337)
T ss_pred hhCCCcHHHhcCCHHHHHHHHHHHhC------------CCCceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEechh
Confidence 34556789999999999998887632 1123799999999999999999999883 356788887
Q ss_pred hhhhhhc-------------cc-------hHHHHHHHHHHHHh-----cCCeEEEEcCcchhhhhccccchhhHHHHHHH
Q 016911 277 SVVSKWR-------------GD-------SEKLIKVLFELARH-----HAPSTIFLDEIDAIISQRGEARSEHEASRRLK 331 (380)
Q Consensus 277 ~l~~~~~-------------ge-------~e~~l~~lf~~A~~-----~~p~ILfIDEiD~l~~~~~~~~~~~~~~~~i~ 331 (380)
++..... +. ....++.+...... ..+.+|+|||+|.+... ..
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~-------------~~ 142 (337)
T PRK12402 76 DFFDQGKKYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALRED-------------AQ 142 (337)
T ss_pred hhhhcchhhhhcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHH-------------HH
Confidence 6542210 00 01222322222221 23469999999987431 12
Q ss_pred HHHHHHhcCCccCCCcEEEEEEeCCCCCchHHHHhcccceeEecCCC
Q 016911 332 TELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRVSFSLIA 378 (380)
Q Consensus 332 ~~Ll~~ldgl~~~~~~VlVIatTN~~~~Ld~aLlrRF~~~I~~plPd 378 (380)
+.|...++... ....+|.+++.+..+.+.+.+|+. .++++.|+
T Consensus 143 ~~L~~~le~~~---~~~~~Il~~~~~~~~~~~L~sr~~-~v~~~~~~ 185 (337)
T PRK12402 143 QALRRIMEQYS---RTCRFIIATRQPSKLIPPIRSRCL-PLFFRAPT 185 (337)
T ss_pred HHHHHHHHhcc---CCCeEEEEeCChhhCchhhcCCce-EEEecCCC
Confidence 23444443322 223456667667777888999974 57777665
No 100
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.25 E-value=4e-11 Score=127.37 Aligned_cols=143 Identities=18% Similarity=0.260 Sum_probs=97.2
Q ss_pred cCCCCccccccchHHHHHHHHHHHhccccCcccccccCCCCceEEEEcCCCCcHHHHHHHHHHhcCCe------------
Q 016911 202 GSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT------------ 269 (380)
Q Consensus 202 ~~p~~~~~~l~Gl~~~k~~L~~~l~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~l~~~------------ 269 (380)
..+..+|++++|++.+++.|...+... +.+..+||+||+|+|||++|+.+|+.++..
T Consensus 9 KyRP~~f~dviGQe~vv~~L~~~l~~~-----------rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~p 77 (618)
T PRK14951 9 KYRPRSFSEMVGQEHVVQALTNALTQQ-----------RLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATP 77 (618)
T ss_pred HHCCCCHHHhcCcHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCC
Confidence 346678999999999999999876431 223568999999999999999999988641
Q ss_pred -----------------EEEEecchhhhhhccchHHHHHHHHHHHHh----cCCeEEEEcCcchhhhhccccchhhHHHH
Q 016911 270 -----------------FFNISASSVVSKWRGDSEKLIKVLFELARH----HAPSTIFLDEIDAIISQRGEARSEHEASR 328 (380)
Q Consensus 270 -----------------~v~v~~s~l~~~~~ge~e~~l~~lf~~A~~----~~p~ILfIDEiD~l~~~~~~~~~~~~~~~ 328 (380)
++.++...- ..-..++.+.+.+.. ....|++|||+|.+...
T Consensus 78 Cg~C~~C~~i~~g~h~D~~eldaas~------~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~------------ 139 (618)
T PRK14951 78 CGVCQACRDIDSGRFVDYTELDAASN------RGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNT------------ 139 (618)
T ss_pred CCccHHHHHHHcCCCCceeecCcccc------cCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHH------------
Confidence 223322210 112234555444332 22469999999998432
Q ss_pred HHHHHHHHHhcCCccCCCcEEEEEEeCCCCCchHHHHhcccceeEecCCC
Q 016911 329 RLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRVSFSLIA 378 (380)
Q Consensus 329 ~i~~~Ll~~ldgl~~~~~~VlVIatTN~~~~Ld~aLlrRF~~~I~~plPd 378 (380)
..+.|+..++ .....+.+|.+|+.+..+.+.+++|+ ..++|..++
T Consensus 140 -a~NaLLKtLE---EPP~~~~fIL~Ttd~~kil~TIlSRc-~~~~f~~Ls 184 (618)
T PRK14951 140 -AFNAMLKTLE---EPPEYLKFVLATTDPQKVPVTVLSRC-LQFNLRPMA 184 (618)
T ss_pred -HHHHHHHhcc---cCCCCeEEEEEECCchhhhHHHHHhc-eeeecCCCC
Confidence 3456777664 34456777888888888999999998 446665443
No 101
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=99.24 E-value=7.5e-11 Score=111.53 Aligned_cols=147 Identities=22% Similarity=0.324 Sum_probs=104.1
Q ss_pred CCCccccccchHHHHHHHHHHHhccccCcccccccCCCCceEEEEcCCCCcHHHHHHHHHHhc---CCeEEEEecchhhh
Q 016911 204 PDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVS 280 (380)
Q Consensus 204 p~~~~~~l~Gl~~~k~~L~~~l~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~l---~~~~v~v~~s~l~~ 280 (380)
....+++|+|.+..++.|.+.....+. ..|..++||||++|||||++++++..++ +..++.+...++..
T Consensus 22 ~~~~l~~L~Gie~Qk~~l~~Nt~~Fl~--------G~pannvLL~G~rGtGKSSlVkall~~y~~~GLRlIev~k~~L~~ 93 (249)
T PF05673_consen 22 DPIRLDDLIGIERQKEALIENTEQFLQ--------GLPANNVLLWGARGTGKSSLVKALLNEYADQGLRLIEVSKEDLGD 93 (249)
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHHc--------CCCCcceEEecCCCCCHHHHHHHHHHHHhhcCceEEEECHHHhcc
Confidence 356799999999999999987655433 2577999999999999999999999977 67888888766532
Q ss_pred hhccchHHHHHHHHHHHH-hcCCeEEEEcCcchhhhhccccchhhHHHHHHHHHHHHHhcC-CccCCCcEEEEEEeCCCC
Q 016911 281 KWRGDSEKLIKVLFELAR-HHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDG-LTQSDELVFVLAATNLPW 358 (380)
Q Consensus 281 ~~~ge~e~~l~~lf~~A~-~~~p~ILfIDEiD~l~~~~~~~~~~~~~~~~i~~~Ll~~ldg-l~~~~~~VlVIatTN~~~ 358 (380)
. ..++...+ ...+-|||+||+.- +..+ . -...|-..|+| +...+.+|++.+|||+..
T Consensus 94 -----l----~~l~~~l~~~~~kFIlf~DDLsF---e~~d----~-----~yk~LKs~LeGgle~~P~NvliyATSNRRH 152 (249)
T PF05673_consen 94 -----L----PELLDLLRDRPYKFILFCDDLSF---EEGD----T-----EYKALKSVLEGGLEARPDNVLIYATSNRRH 152 (249)
T ss_pred -----H----HHHHHHHhcCCCCEEEEecCCCC---CCCc----H-----HHHHHHHHhcCccccCCCcEEEEEecchhh
Confidence 2 22333333 23356999999741 1111 1 12345555555 467788999999999876
Q ss_pred CchH-----------------------HHHhcccceeEecCCCC
Q 016911 359 ELDA-----------------------AMLRRLEKRVSFSLIAL 379 (380)
Q Consensus 359 ~Ld~-----------------------aLlrRF~~~I~~plPd~ 379 (380)
.+++ +|.+||.-.+.|..|+.
T Consensus 153 Lv~E~~~d~~~~~~~eih~~d~~eEklSLsDRFGL~l~F~~~~q 196 (249)
T PF05673_consen 153 LVPESFSDREDIQDDEIHPSDTIEEKLSLSDRFGLWLSFYPPDQ 196 (249)
T ss_pred ccchhhhhccCCCccccCcchHHHHHHhHHHhCCcEEEecCCCH
Confidence 4221 34559999999999985
No 102
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.24 E-value=5.6e-11 Score=125.81 Aligned_cols=143 Identities=20% Similarity=0.233 Sum_probs=96.5
Q ss_pred cCCCCccccccchHHHHHHHHHHHhccccCcccccccCCCCceEEEEcCCCCcHHHHHHHHHHhcCCe------------
Q 016911 202 GSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT------------ 269 (380)
Q Consensus 202 ~~p~~~~~~l~Gl~~~k~~L~~~l~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~l~~~------------ 269 (380)
..+..+|++|+|++.+++.|...+... +-...+||+||||+|||++|+.+|+.++..
T Consensus 9 KyRP~sf~dIiGQe~v~~~L~~ai~~~-----------ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~ 77 (624)
T PRK14959 9 RYRPQTFAEVAGQETVKAILSRAAQEN-----------RVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCE 77 (624)
T ss_pred HhCCCCHHHhcCCHHHHHHHHHHHHcC-----------CCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccH
Confidence 346778999999999999998876431 123589999999999999999999998642
Q ss_pred ------------EEEEecchhhhhhccchHHHHHHHHHHH----HhcCCeEEEEcCcchhhhhccccchhhHHHHHHHHH
Q 016911 270 ------------FFNISASSVVSKWRGDSEKLIKVLFELA----RHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTE 333 (380)
Q Consensus 270 ------------~v~v~~s~l~~~~~ge~e~~l~~lf~~A----~~~~p~ILfIDEiD~l~~~~~~~~~~~~~~~~i~~~ 333 (380)
++.++...- ..-..++.+.+.+ ......||+|||+|.+.. ...+.
T Consensus 78 sC~~i~~g~hpDv~eId~a~~------~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~-------------~a~na 138 (624)
T PRK14959 78 QCRKVTQGMHVDVVEIDGASN------RGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLTR-------------EAFNA 138 (624)
T ss_pred HHHHHhcCCCCceEEEecccc------cCHHHHHHHHHHHHhhhhcCCceEEEEEChHhCCH-------------HHHHH
Confidence 333433210 0111222222221 223457999999998842 23456
Q ss_pred HHHHhcCCccCCCcEEEEEEeCCCCCchHHHHhcccceeEecCCC
Q 016911 334 LLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRVSFSLIA 378 (380)
Q Consensus 334 Ll~~ldgl~~~~~~VlVIatTN~~~~Ld~aLlrRF~~~I~~plPd 378 (380)
|+..++. ....+++|++||.+..+.+.+++|+. .++|+.++
T Consensus 139 LLk~LEE---P~~~~ifILaTt~~~kll~TI~SRcq-~i~F~pLs 179 (624)
T PRK14959 139 LLKTLEE---PPARVTFVLATTEPHKFPVTIVSRCQ-HFTFTRLS 179 (624)
T ss_pred HHHHhhc---cCCCEEEEEecCChhhhhHHHHhhhh-ccccCCCC
Confidence 7777753 33457788888888889999999985 45666553
No 103
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.24 E-value=4.1e-11 Score=127.04 Aligned_cols=144 Identities=23% Similarity=0.297 Sum_probs=99.3
Q ss_pred ccCCCCccccccchHHHHHHHHHHHhccccCcccccccCCCCceEEEEcCCCCcHHHHHHHHHHhcCCe-----------
Q 016911 201 RGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT----------- 269 (380)
Q Consensus 201 ~~~p~~~~~~l~Gl~~~k~~L~~~l~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~l~~~----------- 269 (380)
...+...|++++|++.+++.|...+... +.+..+||+||+|+|||++|+++|+.++..
T Consensus 8 ~k~RP~~f~~iiGq~~v~~~L~~~i~~~-----------~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c 76 (576)
T PRK14965 8 RKYRPQTFSDLTGQEHVSRTLQNAIDTG-----------RVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVC 76 (576)
T ss_pred HHhCCCCHHHccCcHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCcc
Confidence 3456678999999999999999876431 234678999999999999999999998532
Q ss_pred -------------EEEEecchhhhhhccchHHHHHHHHHHHHh----cCCeEEEEcCcchhhhhccccchhhHHHHHHHH
Q 016911 270 -------------FFNISASSVVSKWRGDSEKLIKVLFELARH----HAPSTIFLDEIDAIISQRGEARSEHEASRRLKT 332 (380)
Q Consensus 270 -------------~v~v~~s~l~~~~~ge~e~~l~~lf~~A~~----~~p~ILfIDEiD~l~~~~~~~~~~~~~~~~i~~ 332 (380)
+++++...- ..-..++.+...+.. ....|++|||+|.+.. ...+
T Consensus 77 ~~c~~i~~g~~~d~~eid~~s~------~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~-------------~a~n 137 (576)
T PRK14965 77 PPCVEITEGRSVDVFEIDGASN------TGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLST-------------NAFN 137 (576)
T ss_pred HHHHHHhcCCCCCeeeeeccCc------cCHHHHHHHHHHHHhccccCCceEEEEEChhhCCH-------------HHHH
Confidence 233332211 112334555444432 2346999999998843 2346
Q ss_pred HHHHHhcCCccCCCcEEEEEEeCCCCCchHHHHhcccceeEecCCC
Q 016911 333 ELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRVSFSLIA 378 (380)
Q Consensus 333 ~Ll~~ldgl~~~~~~VlVIatTN~~~~Ld~aLlrRF~~~I~~plPd 378 (380)
.|+..|+. ....+++|.+|+.++.+.+++++|+. .++|..++
T Consensus 138 aLLk~LEe---pp~~~~fIl~t~~~~kl~~tI~SRc~-~~~f~~l~ 179 (576)
T PRK14965 138 ALLKTLEE---PPPHVKFIFATTEPHKVPITILSRCQ-RFDFRRIP 179 (576)
T ss_pred HHHHHHHc---CCCCeEEEEEeCChhhhhHHHHHhhh-hhhcCCCC
Confidence 67777753 44557788888889999999999985 46665443
No 104
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=99.23 E-value=6.5e-11 Score=117.25 Aligned_cols=142 Identities=25% Similarity=0.338 Sum_probs=97.3
Q ss_pred CCCCccccccchHHHHHHHHHHHhccccCcccccccCCCCceEEEEcCCCCcHHHHHHHHHHhcCCe-------------
Q 016911 203 SPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT------------- 269 (380)
Q Consensus 203 ~p~~~~~~l~Gl~~~k~~L~~~l~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~l~~~------------- 269 (380)
.+...|++++|.+.+++.+.+.+... +.+..+||+||||+|||++|+++++.+...
T Consensus 8 ~rp~~~~~iig~~~~~~~l~~~~~~~-----------~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~ 76 (355)
T TIGR02397 8 YRPQTFEDVIGQEHIVQTLKNAIKNG-----------RIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECES 76 (355)
T ss_pred hCCCcHhhccCcHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHH
Confidence 35678999999999999998876431 234678999999999999999999987422
Q ss_pred -----------EEEEecchhhhhhccchHHHHHHHHHHHHhc----CCeEEEEcCcchhhhhccccchhhHHHHHHHHHH
Q 016911 270 -----------FFNISASSVVSKWRGDSEKLIKVLFELARHH----APSTIFLDEIDAIISQRGEARSEHEASRRLKTEL 334 (380)
Q Consensus 270 -----------~v~v~~s~l~~~~~ge~e~~l~~lf~~A~~~----~p~ILfIDEiD~l~~~~~~~~~~~~~~~~i~~~L 334 (380)
++.++... ......++.++..+... ...|++|||+|.+.. ...+.|
T Consensus 77 c~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~~~~~~p~~~~~~vviidea~~l~~-------------~~~~~L 137 (355)
T TIGR02397 77 CKEINSGSSLDVIEIDAAS------NNGVDDIREILDNVKYAPSSGKYKVYIIDEVHMLSK-------------SAFNAL 137 (355)
T ss_pred HHHHhcCCCCCEEEeeccc------cCCHHHHHHHHHHHhcCcccCCceEEEEeChhhcCH-------------HHHHHH
Confidence 23333221 11223345555554432 245999999998732 134556
Q ss_pred HHHhcCCccCCCcEEEEEEeCCCCCchHHHHhcccceeEecCCC
Q 016911 335 LIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRVSFSLIA 378 (380)
Q Consensus 335 l~~ldgl~~~~~~VlVIatTN~~~~Ld~aLlrRF~~~I~~plPd 378 (380)
+..++. ....+++|.+|+.++.+.+++++|+. .++|+.|+
T Consensus 138 l~~le~---~~~~~~lIl~~~~~~~l~~~l~sr~~-~~~~~~~~ 177 (355)
T TIGR02397 138 LKTLEE---PPEHVVFILATTEPHKIPATILSRCQ-RFDFKRIP 177 (355)
T ss_pred HHHHhC---CccceeEEEEeCCHHHHHHHHHhhee-EEEcCCCC
Confidence 766643 33456677788888888899999984 67887665
No 105
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=99.23 E-value=6.8e-11 Score=126.94 Aligned_cols=150 Identities=21% Similarity=0.280 Sum_probs=101.1
Q ss_pred ccCCCCccccccchHHHHHHHHHHHhccccCcccccccCCCCceEEEEcCCCCcHHHHHHHHHHhcCCeEEEE---ecch
Q 016911 201 RGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNI---SASS 277 (380)
Q Consensus 201 ~~~p~~~~~~l~Gl~~~k~~L~~~l~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~l~~~~v~v---~~s~ 277 (380)
...+...|++++|++.+++.|+..+... +.+..+||+||+|+|||++|+++|..+...-... .|..
T Consensus 10 ~KyRP~~f~dIiGQe~~v~~L~~aI~~~-----------rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~ 78 (725)
T PRK07133 10 RKYRPKTFDDIVGQDHIVQTLKNIIKSN-----------KISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQE 78 (725)
T ss_pred HHhCCCCHHHhcCcHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhH
Confidence 3456778999999999999999877431 2346789999999999999999999885421100 0100
Q ss_pred hh---h---hhc---c---chHHHHHHHHHHHHh----cCCeEEEEcCcchhhhhccccchhhHHHHHHHHHHHHHhcCC
Q 016911 278 VV---S---KWR---G---DSEKLIKVLFELARH----HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGL 341 (380)
Q Consensus 278 l~---~---~~~---g---e~e~~l~~lf~~A~~----~~p~ILfIDEiD~l~~~~~~~~~~~~~~~~i~~~Ll~~ldgl 341 (380)
-. + ++. + .....++.+.+.+.. ....|++|||+|.+... ..+.|+..|+.
T Consensus 79 C~~~~~~~~Dvieidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~~-------------A~NALLKtLEE- 144 (725)
T PRK07133 79 CIENVNNSLDIIEMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSKS-------------AFNALLKTLEE- 144 (725)
T ss_pred HHHhhcCCCcEEEEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCHH-------------HHHHHHHHhhc-
Confidence 00 0 000 0 123345555555543 33569999999988432 35567777753
Q ss_pred ccCCCcEEEEEEeCCCCCchHHHHhcccceeEecCCC
Q 016911 342 TQSDELVFVLAATNLPWELDAAMLRRLEKRVSFSLIA 378 (380)
Q Consensus 342 ~~~~~~VlVIatTN~~~~Ld~aLlrRF~~~I~~plPd 378 (380)
.+..+++|.+|+.++.+.+++++|+. .++|..|+
T Consensus 145 --PP~~tifILaTte~~KLl~TI~SRcq-~ieF~~L~ 178 (725)
T PRK07133 145 --PPKHVIFILATTEVHKIPLTILSRVQ-RFNFRRIS 178 (725)
T ss_pred --CCCceEEEEEcCChhhhhHHHHhhce-eEEccCCC
Confidence 44557778888888999999999995 67776664
No 106
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=99.23 E-value=5.9e-11 Score=125.15 Aligned_cols=143 Identities=20% Similarity=0.259 Sum_probs=97.6
Q ss_pred cCCCCccccccchHHHHHHHHHHHhccccCcccccccCCCCceEEEEcCCCCcHHHHHHHHHHhcCC-------------
Q 016911 202 GSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKT------------- 268 (380)
Q Consensus 202 ~~p~~~~~~l~Gl~~~k~~L~~~l~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~l~~------------- 268 (380)
..+...|++++|++.+++.+...+... +.+..+||+||+|+|||++|+++|..+..
T Consensus 9 KyRP~~F~dIIGQe~iv~~L~~aI~~~-----------rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C~ 77 (605)
T PRK05896 9 KYRPHNFKQIIGQELIKKILVNAILNN-----------KLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCS 77 (605)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHHcC-----------CCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccH
Confidence 456778999999999999988876321 23467999999999999999999998842
Q ss_pred -----------eEEEEecchhhhhhccchHHHHHHHHHHHHh----cCCeEEEEcCcchhhhhccccchhhHHHHHHHHH
Q 016911 269 -----------TFFNISASSVVSKWRGDSEKLIKVLFELARH----HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTE 333 (380)
Q Consensus 269 -----------~~v~v~~s~l~~~~~ge~e~~l~~lf~~A~~----~~p~ILfIDEiD~l~~~~~~~~~~~~~~~~i~~~ 333 (380)
.++.++++.. ..-..++.+...+.. ....|++|||+|.+... ..+.
T Consensus 78 sCr~i~~~~h~DiieIdaas~------igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~-------------A~Na 138 (605)
T PRK05896 78 VCESINTNQSVDIVELDAASN------NGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTS-------------AWNA 138 (605)
T ss_pred HHHHHHcCCCCceEEeccccc------cCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCHH-------------HHHH
Confidence 2233332210 112234444443332 23469999999988421 2356
Q ss_pred HHHHhcCCccCCCcEEEEEEeCCCCCchHHHHhcccceeEecCCC
Q 016911 334 LLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRVSFSLIA 378 (380)
Q Consensus 334 Ll~~ldgl~~~~~~VlVIatTN~~~~Ld~aLlrRF~~~I~~plPd 378 (380)
|+..++. .+..+++|.+|+.+..+.+++++|+. .++|+.|+
T Consensus 139 LLKtLEE---Pp~~tvfIL~Tt~~~KLl~TI~SRcq-~ieF~~Ls 179 (605)
T PRK05896 139 LLKTLEE---PPKHVVFIFATTEFQKIPLTIISRCQ-RYNFKKLN 179 (605)
T ss_pred HHHHHHh---CCCcEEEEEECCChHhhhHHHHhhhh-hcccCCCC
Confidence 7777743 34456777888888999999999986 56776664
No 107
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=99.23 E-value=1e-11 Score=126.44 Aligned_cols=152 Identities=24% Similarity=0.302 Sum_probs=106.0
Q ss_pred CCCccccccchHHHHHHHHHHHhccccCcccccccCCCCceEEEEcCCCCcHHHHHHHHHHhc---CCeEEEEecchhhh
Q 016911 204 PDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVS 280 (380)
Q Consensus 204 p~~~~~~l~Gl~~~k~~L~~~l~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~l---~~~~v~v~~s~l~~ 280 (380)
+......|+|.+.+..++.+.+.. +.+....|||.|.+||||..+|++|.+.+ +.||+.+||+.+..
T Consensus 218 ~~~~~~~iIG~S~am~~ll~~i~~----------VA~Sd~tVLi~GETGtGKElvAraIH~~S~R~~kPfV~~NCAAlPe 287 (550)
T COG3604 218 VVLEVGGIIGRSPAMRQLLKEIEV----------VAKSDSTVLIRGETGTGKELVARAIHQLSPRRDKPFVKLNCAALPE 287 (550)
T ss_pred hhcccccceecCHHHHHHHHHHHH----------HhcCCCeEEEecCCCccHHHHHHHHHhhCcccCCCceeeeccccch
Confidence 355678999999999988877644 23556899999999999999999999988 67999999976643
Q ss_pred h---------hccchHHHH---HHHHHHHHhcCCeEEEEcCcchhhhhccccchhhHHHHHHHHHHHHHhcCCccCCCcE
Q 016911 281 K---------WRGDSEKLI---KVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELV 348 (380)
Q Consensus 281 ~---------~~ge~e~~l---~~lf~~A~~~~p~ILfIDEiD~l~~~~~~~~~~~~~~~~i~~~Ll~~ldgl~~~~~~V 348 (380)
. ..|.....+ +.-|+.|. ++.||||||..+... -+....+.+++.-+..+.+-....-+|
T Consensus 288 sLlESELFGHeKGAFTGA~~~r~GrFElAd---GGTLFLDEIGelPL~-----lQaKLLRvLQegEieRvG~~r~ikVDV 359 (550)
T COG3604 288 SLLESELFGHEKGAFTGAINTRRGRFELAD---GGTLFLDEIGELPLA-----LQAKLLRVLQEGEIERVGGDRTIKVDV 359 (550)
T ss_pred HHHHHHHhcccccccccchhccCcceeecC---CCeEechhhccCCHH-----HHHHHHHHHhhcceeecCCCceeEEEE
Confidence 2 222222211 23355554 579999999998653 233445555444444444444444569
Q ss_pred EEEEEeCCCCCchHHHHh-cccceeEec
Q 016911 349 FVLAATNLPWELDAAMLR-RLEKRVSFS 375 (380)
Q Consensus 349 lVIatTN~~~~Ld~aLlr-RF~~~I~~p 375 (380)
.|||+||+ +|..++.+ +|...+++.
T Consensus 360 RiIAATNR--DL~~~V~~G~FRaDLYyR 385 (550)
T COG3604 360 RVIAATNR--DLEEMVRDGEFRADLYYR 385 (550)
T ss_pred EEEeccch--hHHHHHHcCcchhhhhhc
Confidence 99999999 78777777 665555443
No 108
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=99.22 E-value=4e-11 Score=108.30 Aligned_cols=114 Identities=25% Similarity=0.314 Sum_probs=74.1
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHhcCC----eEEEEecchhhhhhccchHHHHHHHHHH----HHhcCCeEEEEcCcch
Q 016911 241 PWKGILLFGPPGTGKTMLAKAVATECKT----TFFNISASSVVSKWRGDSEKLIKVLFEL----ARHHAPSTIFLDEIDA 312 (380)
Q Consensus 241 ~~~~vLL~GppGtGKT~la~ala~~l~~----~~v~v~~s~l~~~~~ge~e~~l~~lf~~----A~~~~p~ILfIDEiD~ 312 (380)
|-.+++|.||+|+|||.+|+++|..+.. +++.++++.+.... +.+..+..+... .......||||||||+
T Consensus 2 p~~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~~~~--~~~~~~~~l~~~~~~~v~~~~~gVVllDEidK 79 (171)
T PF07724_consen 2 PKSNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYSEGD--DVESSVSKLLGSPPGYVGAEEGGVVLLDEIDK 79 (171)
T ss_dssp -SEEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHCSHH--HCSCHCHHHHHHTTCHHHHHHHTEEEEETGGG
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhcccccc--hHHhhhhhhhhcccceeeccchhhhhhHHHhh
Confidence 5578999999999999999999999986 99999999886611 111111111111 1111124999999999
Q ss_pred hhhhccccchhhHHHHHHHHHHHHHhcCCc--------cCCCcEEEEEEeCCCC
Q 016911 313 IISQRGEARSEHEASRRLKTELLIQMDGLT--------QSDELVFVLAATNLPW 358 (380)
Q Consensus 313 l~~~~~~~~~~~~~~~~i~~~Ll~~ldgl~--------~~~~~VlVIatTN~~~ 358 (380)
+.+.... ..+.....+++.|+..+++-. -...+++||+|+|-..
T Consensus 80 a~~~~~~--~~~v~~~~V~~~LL~~le~g~~~d~~g~~vd~~n~ifI~Tsn~~~ 131 (171)
T PF07724_consen 80 AHPSNSG--GADVSGEGVQNSLLQLLEGGTLTDSYGRTVDTSNIIFIMTSNFGA 131 (171)
T ss_dssp CSHTTTT--CSHHHHHHHHHHHHHHHHHSEEEETTCCEEEGTTEEEEEEESSST
T ss_pred ccccccc--cchhhHHHHHHHHHHHhcccceecccceEEEeCCceEEEeccccc
Confidence 9875222 222333456777777776421 1235689999998765
No 109
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.20 E-value=3e-10 Score=113.09 Aligned_cols=156 Identities=21% Similarity=0.226 Sum_probs=99.5
Q ss_pred CCccccccchHHHHHHHHHHHhccccCcccccccCCCCceEEEEcCCCCcHHHHHHHHHHhcC---------CeEEEEec
Q 016911 205 DVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECK---------TTFFNISA 275 (380)
Q Consensus 205 ~~~~~~l~Gl~~~k~~L~~~l~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~l~---------~~~v~v~~ 275 (380)
....+.+.|.++.++.|...+...+. ...+.+++|+||||||||++++++++.+. ..++.++|
T Consensus 11 ~~~p~~l~gRe~e~~~l~~~l~~~~~--------~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~ 82 (365)
T TIGR02928 11 DYVPDRIVHRDEQIEELAKALRPILR--------GSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNC 82 (365)
T ss_pred CCCCCCCCCcHHHHHHHHHHHHHHHc--------CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEEC
Confidence 33346899999999998887644222 12346799999999999999999998762 56888888
Q ss_pred chhhhh----------hc--c--------chHHHHHHHHHHHH-hcCCeEEEEcCcchhhhhccccchhhHHHHHHHHHH
Q 016911 276 SSVVSK----------WR--G--------DSEKLIKVLFELAR-HHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTEL 334 (380)
Q Consensus 276 s~l~~~----------~~--g--------e~e~~l~~lf~~A~-~~~p~ILfIDEiD~l~~~~~~~~~~~~~~~~i~~~L 334 (380)
...... .. + ........++.... ...+.||+|||+|.+....+ .++..+
T Consensus 83 ~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~----------~~L~~l 152 (365)
T TIGR02928 83 QILDTLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDD----------DLLYQL 152 (365)
T ss_pred CCCCCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCc----------HHHHhH
Confidence 643211 10 1 11223344444433 23467999999999962211 123334
Q ss_pred HHHhcCCccCCCcEEEEEEeCCCC---CchHHHHhccc-ceeEecCCC
Q 016911 335 LIQMDGLTQSDELVFVLAATNLPW---ELDAAMLRRLE-KRVSFSLIA 378 (380)
Q Consensus 335 l~~ldgl~~~~~~VlVIatTN~~~---~Ld~aLlrRF~-~~I~~plPd 378 (380)
+...+.......++.+|+++|.++ .+++.+.+||. ..+.|+.++
T Consensus 153 ~~~~~~~~~~~~~v~lI~i~n~~~~~~~l~~~~~s~~~~~~i~f~p~~ 200 (365)
T TIGR02928 153 SRARSNGDLDNAKVGVIGISNDLKFRENLDPRVKSSLCEEEIIFPPYD 200 (365)
T ss_pred hccccccCCCCCeEEEEEEECCcchHhhcCHHHhccCCcceeeeCCCC
Confidence 333111122335688899999886 47888888985 567777765
No 110
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.20 E-value=9.6e-11 Score=125.96 Aligned_cols=152 Identities=25% Similarity=0.330 Sum_probs=108.8
Q ss_pred ccccchHHHHHHHHHHHhccccCcccccccCCCCceEEEEcCCCCcHHHHHHHHHHhcC---CeEEEEecchhhhh----
Q 016911 209 ESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECK---TTFFNISASSVVSK---- 281 (380)
Q Consensus 209 ~~l~Gl~~~k~~L~~~l~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~l~---~~~v~v~~s~l~~~---- 281 (380)
..++|++.++..+.+.+..... -+...-+|...+||.||+|+|||.||+++|..+. ..++.+|+|+++.+
T Consensus 491 ~rViGQd~AV~avs~aIrraRa---GL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~DMSEy~EkHsVS 567 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRRARA---GLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRIDMSEYMEKHSVS 567 (786)
T ss_pred cceeChHHHHHHHHHHHHHHhc---CCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCCCccceeechHHHHHHHHHH
Confidence 5778999999988887754321 1112235556789999999999999999999995 78999999988644
Q ss_pred --------hccchHHHHHHHHHHHHhcCCeEEEEcCcchhhhhccccchhhHHHHHHHHHHHHHhcCCccC--------C
Q 016911 282 --------WRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQS--------D 345 (380)
Q Consensus 282 --------~~ge~e~~l~~lf~~A~~~~p~ILfIDEiD~l~~~~~~~~~~~~~~~~i~~~Ll~~ldgl~~~--------~ 345 (380)
|+|..+. ..+-+..+..+.+||+||||++..+ .+.+.|++-+|.-... -
T Consensus 568 rLIGaPPGYVGyeeG--G~LTEaVRr~PySViLlDEIEKAHp-------------dV~nilLQVlDdGrLTD~~Gr~VdF 632 (786)
T COG0542 568 RLIGAPPGYVGYEEG--GQLTEAVRRKPYSVILLDEIEKAHP-------------DVFNLLLQVLDDGRLTDGQGRTVDF 632 (786)
T ss_pred HHhCCCCCCceeccc--cchhHhhhcCCCeEEEechhhhcCH-------------HHHHHHHHHhcCCeeecCCCCEEec
Confidence 4443331 2345566677789999999998744 3677788888753221 1
Q ss_pred CcEEEEEEeCCCCC----------------------------chHHHHhcccceeEecCCC
Q 016911 346 ELVFVLAATNLPWE----------------------------LDAAMLRRLEKRVSFSLIA 378 (380)
Q Consensus 346 ~~VlVIatTN~~~~----------------------------Ld~aLlrRF~~~I~~plPd 378 (380)
++.+||.|||-... ..|+++.|++.+|.|...+
T Consensus 633 rNtiIImTSN~Gs~~i~~~~~~~~~~~~~~~~~~v~~~l~~~F~PEFLNRid~II~F~~L~ 693 (786)
T COG0542 633 RNTIIIMTSNAGSEEILRDADGDDFADKEALKEAVMEELKKHFRPEFLNRIDEIIPFNPLS 693 (786)
T ss_pred ceeEEEEecccchHHHHhhccccccchhhhHHHHHHHHHHhhCCHHHHhhcccEEeccCCC
Confidence 45789999986521 4477778999888886543
No 111
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=99.19 E-value=1.5e-11 Score=126.46 Aligned_cols=152 Identities=24% Similarity=0.330 Sum_probs=103.7
Q ss_pred CCCccccccchHHHHHHHHHHHhccccCcccccccCCCCceEEEEcCCCCcHHHHHHHHHHhc---CCeEEEEecchhhh
Q 016911 204 PDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVS 280 (380)
Q Consensus 204 p~~~~~~l~Gl~~~k~~L~~~l~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~l---~~~~v~v~~s~l~~ 280 (380)
...+|++|+|.+.....+.+.... ..+....|||.|.+||||..+|+++.+.+ +.||+.+||..+..
T Consensus 240 a~y~f~~Iig~S~~m~~~~~~akr----------~A~tdstVLi~GESGTGKElfA~~IH~~S~R~~~PFIaiNCaAiPe 309 (560)
T COG3829 240 AKYTFDDIIGESPAMLRVLELAKR----------IAKTDSTVLILGESGTGKELFARAIHNLSPRANGPFIAINCAAIPE 309 (560)
T ss_pred cccchhhhccCCHHHHHHHHHHHh----------hcCCCCcEEEecCCCccHHHHHHHHHhcCcccCCCeEEEecccCCH
Confidence 345799999999888877766533 34566899999999999999999999988 77999999976543
Q ss_pred hh---------c----cchHHHHHHHHHHHHhcCCeEEEEcCcchhhhhccccchhhHHHHHHHHHHHHHhcCCccCCCc
Q 016911 281 KW---------R----GDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDEL 347 (380)
Q Consensus 281 ~~---------~----ge~e~~l~~lf~~A~~~~p~ILfIDEiD~l~~~~~~~~~~~~~~~~i~~~Ll~~ldgl~~~~~~ 347 (380)
.. . |....--...|+.|. ++.||||||..+... -+....+.++..-+..+.+.....-+
T Consensus 310 ~LlESELFGye~GAFTGA~~~GK~GlfE~A~---gGTLFLDEIgempl~-----LQaKLLRVLQEkei~rvG~t~~~~vD 381 (560)
T COG3829 310 TLLESELFGYEKGAFTGASKGGKPGLFELAN---GGTLFLDEIGEMPLP-----LQAKLLRVLQEKEIERVGGTKPIPVD 381 (560)
T ss_pred HHHHHHHhCcCCccccccccCCCCcceeecc---CCeEEehhhccCCHH-----HHHHHHHHHhhceEEecCCCCceeeE
Confidence 21 1 222221235666666 579999999988542 22233333333333334444555567
Q ss_pred EEEEEEeCCCCCchHHHHh-cccceeEec
Q 016911 348 VFVLAATNLPWELDAAMLR-RLEKRVSFS 375 (380)
Q Consensus 348 VlVIatTN~~~~Ld~aLlr-RF~~~I~~p 375 (380)
|.||||||+ ++..++.. +|...+++.
T Consensus 382 VRIIAATN~--nL~~~i~~G~FReDLYYR 408 (560)
T COG3829 382 VRIIAATNR--NLEKMIAEGTFREDLYYR 408 (560)
T ss_pred EEEEeccCc--CHHHHHhcCcchhhheee
Confidence 999999998 66666666 666555554
No 112
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=99.19 E-value=4.9e-11 Score=107.39 Aligned_cols=136 Identities=25% Similarity=0.367 Sum_probs=81.7
Q ss_pred ccchHHHHHHHHHHHhccccCcccccccCCCCceEEEEcCCCCcHHHHHHHHHHhc---CCeEEEEecchhhhhh-----
Q 016911 211 IKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKW----- 282 (380)
Q Consensus 211 l~Gl~~~k~~L~~~l~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~l---~~~~v~v~~s~l~~~~----- 282 (380)
|+|.+..++.+.+.+... ...+..|||+|++||||+.+|+++.+.. +.||+.++|+.+....
T Consensus 1 liG~s~~m~~~~~~~~~~----------a~~~~pVlI~GE~GtGK~~lA~~IH~~s~r~~~pfi~vnc~~~~~~~~e~~L 70 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRA----------ASSDLPVLITGETGTGKELLARAIHNNSPRKNGPFISVNCAALPEELLESEL 70 (168)
T ss_dssp SS--SHHHHHHHHHHHHH----------TTSTS-EEEECSTTSSHHHHHHHHHHCSTTTTS-EEEEETTTS-HHHHHHHH
T ss_pred CEeCCHHHHHHHHHHHHH----------hCCCCCEEEEcCCCCcHHHHHHHHHHhhhcccCCeEEEehhhhhcchhhhhh
Confidence 466677777666655442 2344789999999999999999999977 5799999998764331
Q ss_pred ccch-------HHHHHHHHHHHHhcCCeEEEEcCcchhhhhccccchhhHHHHHHHHHHHHHhcCC--------ccCCCc
Q 016911 283 RGDS-------EKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGL--------TQSDEL 347 (380)
Q Consensus 283 ~ge~-------e~~l~~lf~~A~~~~p~ILfIDEiD~l~~~~~~~~~~~~~~~~i~~~Ll~~ldgl--------~~~~~~ 347 (380)
.|.. ......+++.|. .++||||||+.+.+. ++..|+..++.- ....-+
T Consensus 71 FG~~~~~~~~~~~~~~G~l~~A~---~GtL~Ld~I~~L~~~-------------~Q~~Ll~~l~~~~~~~~g~~~~~~~~ 134 (168)
T PF00158_consen 71 FGHEKGAFTGARSDKKGLLEQAN---GGTLFLDEIEDLPPE-------------LQAKLLRVLEEGKFTRLGSDKPVPVD 134 (168)
T ss_dssp HEBCSSSSTTTSSEBEHHHHHTT---TSEEEEETGGGS-HH-------------HHHHHHHHHHHSEEECCTSSSEEE--
T ss_pred hccccccccccccccCCceeecc---ceEEeecchhhhHHH-------------HHHHHHHHHhhchhcccccccccccc
Confidence 1211 011124555555 589999999999654 333444444311 112246
Q ss_pred EEEEEEeCCCCCchHHHHh-cccceeEe
Q 016911 348 VFVLAATNLPWELDAAMLR-RLEKRVSF 374 (380)
Q Consensus 348 VlVIatTN~~~~Ld~aLlr-RF~~~I~~ 374 (380)
+.||++|+. ++...+.+ +|...+++
T Consensus 135 ~RiI~st~~--~l~~~v~~g~fr~dLy~ 160 (168)
T PF00158_consen 135 VRIIASTSK--DLEELVEQGRFREDLYY 160 (168)
T ss_dssp EEEEEEESS---HHHHHHTTSS-HHHHH
T ss_pred ceEEeecCc--CHHHHHHcCCChHHHHH
Confidence 889999997 55555554 56554443
No 113
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=99.19 E-value=1.6e-10 Score=122.00 Aligned_cols=143 Identities=20% Similarity=0.257 Sum_probs=97.8
Q ss_pred cCCCCccccccchHHHHHHHHHHHhccccCcccccccCCCCceEEEEcCCCCcHHHHHHHHHHhcCCe------------
Q 016911 202 GSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT------------ 269 (380)
Q Consensus 202 ~~p~~~~~~l~Gl~~~k~~L~~~l~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~l~~~------------ 269 (380)
..+...|++++|++.+++.|+..+... +.+..+||+||+|+|||++|+++|+.++..
T Consensus 9 kyRP~~f~diiGqe~iv~~L~~~i~~~-----------~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~ 77 (563)
T PRK06647 9 KRRPRDFNSLEGQDFVVETLKHSIESN-----------KIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECS 77 (563)
T ss_pred HhCCCCHHHccCcHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccch
Confidence 456778999999999999999877431 234579999999999999999999988542
Q ss_pred ------------EEEEecchhhhhhccchHHHHHHHHHHHH----hcCCeEEEEcCcchhhhhccccchhhHHHHHHHHH
Q 016911 270 ------------FFNISASSVVSKWRGDSEKLIKVLFELAR----HHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTE 333 (380)
Q Consensus 270 ------------~v~v~~s~l~~~~~ge~e~~l~~lf~~A~----~~~p~ILfIDEiD~l~~~~~~~~~~~~~~~~i~~~ 333 (380)
++.+++.. ...-..++.+.+.+. .....|++|||+|.+.. ...+.
T Consensus 78 ~C~~i~~~~~~dv~~idgas------~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~-------------~a~na 138 (563)
T PRK06647 78 SCKSIDNDNSLDVIEIDGAS------NTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSN-------------SAFNA 138 (563)
T ss_pred HHHHHHcCCCCCeEEecCcc------cCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCH-------------HHHHH
Confidence 22222111 011223333332222 23457999999998832 23456
Q ss_pred HHHHhcCCccCCCcEEEEEEeCCCCCchHHHHhcccceeEecCCC
Q 016911 334 LLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRVSFSLIA 378 (380)
Q Consensus 334 Ll~~ldgl~~~~~~VlVIatTN~~~~Ld~aLlrRF~~~I~~plPd 378 (380)
|+..++ .....+++|.+|+.+..+.+++++|+. .++|..|+
T Consensus 139 LLK~LE---epp~~~vfI~~tte~~kL~~tI~SRc~-~~~f~~l~ 179 (563)
T PRK06647 139 LLKTIE---EPPPYIVFIFATTEVHKLPATIKSRCQ-HFNFRLLS 179 (563)
T ss_pred HHHhhc---cCCCCEEEEEecCChHHhHHHHHHhce-EEEecCCC
Confidence 777764 344557777888888889999999986 56777664
No 114
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.18 E-value=1.8e-10 Score=115.28 Aligned_cols=142 Identities=20% Similarity=0.291 Sum_probs=96.1
Q ss_pred CCCCccccccchHHHHHHHHHHHhccccCcccccccCCCCceEEEEcCCCCcHHHHHHHHHHhcCCe------------E
Q 016911 203 SPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT------------F 270 (380)
Q Consensus 203 ~p~~~~~~l~Gl~~~k~~L~~~l~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~l~~~------------~ 270 (380)
.+...|++++|++.+++.+...+... ..+.++||+||||+|||++|+++++.+..+ +
T Consensus 11 ~rP~~~~~iig~~~~~~~l~~~i~~~-----------~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~ 79 (367)
T PRK14970 11 YRPQTFDDVVGQSHITNTLLNAIENN-----------HLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNI 79 (367)
T ss_pred HCCCcHHhcCCcHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcce
Confidence 45678999999999999888876431 234689999999999999999999987542 1
Q ss_pred EEEecchhhhhhccchHHHHHHHHHHHHh----cCCeEEEEcCcchhhhhccccchhhHHHHHHHHHHHHHhcCCccCCC
Q 016911 271 FNISASSVVSKWRGDSEKLIKVLFELARH----HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDE 346 (380)
Q Consensus 271 v~v~~s~l~~~~~ge~e~~l~~lf~~A~~----~~p~ILfIDEiD~l~~~~~~~~~~~~~~~~i~~~Ll~~ldgl~~~~~ 346 (380)
+.++... ......++.++..+.. ..+.||+|||+|.+... ..+.++..++. ...
T Consensus 80 ~~l~~~~------~~~~~~i~~l~~~~~~~p~~~~~kiviIDE~~~l~~~-------------~~~~ll~~le~---~~~ 137 (367)
T PRK14970 80 FELDAAS------NNSVDDIRNLIDQVRIPPQTGKYKIYIIDEVHMLSSA-------------AFNAFLKTLEE---PPA 137 (367)
T ss_pred EEecccc------CCCHHHHHHHHHHHhhccccCCcEEEEEeChhhcCHH-------------HHHHHHHHHhC---CCC
Confidence 2222111 1122445555554432 23569999999977431 23456666643 233
Q ss_pred cEEEEEEeCCCCCchHHHHhcccceeEecCCC
Q 016911 347 LVFVLAATNLPWELDAAMLRRLEKRVSFSLIA 378 (380)
Q Consensus 347 ~VlVIatTN~~~~Ld~aLlrRF~~~I~~plPd 378 (380)
..++|.+++.+..+.+++.+|+. .++|+.|+
T Consensus 138 ~~~~Il~~~~~~kl~~~l~sr~~-~v~~~~~~ 168 (367)
T PRK14970 138 HAIFILATTEKHKIIPTILSRCQ-IFDFKRIT 168 (367)
T ss_pred ceEEEEEeCCcccCCHHHHhcce-eEecCCcc
Confidence 45566677778889999999985 57777765
No 115
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=99.18 E-value=1.1e-10 Score=120.20 Aligned_cols=125 Identities=17% Similarity=0.305 Sum_probs=79.3
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhc-----CCeEEEEecchhhhhhccchHHHHHHHHHHHHhcCCeEEEEcCcchhhhh
Q 016911 242 WKGILLFGPPGTGKTMLAKAVATEC-----KTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQ 316 (380)
Q Consensus 242 ~~~vLL~GppGtGKT~la~ala~~l-----~~~~v~v~~s~l~~~~~ge~e~~l~~lf~~A~~~~p~ILfIDEiD~l~~~ 316 (380)
...++|+||||+|||+|++++++++ +..++++++.++...+...........|.... ...++|+|||++.+.+.
T Consensus 148 ~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~~-~~~dlLiiDDi~~l~~~ 226 (450)
T PRK00149 148 YNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKFTNDFVNALRNNTMEEFKEKY-RSVDVLLIDDIQFLAGK 226 (450)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHcCcHHHHHHHH-hcCCEEEEehhhhhcCC
Confidence 3579999999999999999999987 55688899988766554332211111222222 24679999999988543
Q ss_pred ccccchhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCCCCC---chHHHHhcccc--eeEecCCCC
Q 016911 317 RGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWE---LDAAMLRRLEK--RVSFSLIAL 379 (380)
Q Consensus 317 ~~~~~~~~~~~~~i~~~Ll~~ldgl~~~~~~VlVIatTN~~~~---Ld~aLlrRF~~--~I~~plPd~ 379 (380)
.. ....++..++.+..... .+||++...|.. +++.+.+||.. .+++..|+.
T Consensus 227 ~~-----------~~~~l~~~~n~l~~~~~-~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~ 282 (450)
T PRK00149 227 ER-----------TQEEFFHTFNALHEAGK-QIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDL 282 (450)
T ss_pred HH-----------HHHHHHHHHHHHHHCCC-cEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCH
Confidence 21 12233443333332333 344544444444 77899999964 678888874
No 116
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.17 E-value=1.6e-10 Score=124.35 Aligned_cols=164 Identities=23% Similarity=0.346 Sum_probs=124.3
Q ss_pred hccchhhccCCCCccccccchHHHHHHHHHHHhccccCcccccccCCCCceEEEEcCCCCcHHHHHHHHHHhc-------
Q 016911 194 SLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC------- 266 (380)
Q Consensus 194 ~~~~~~~~~~p~~~~~~l~Gl~~~k~~L~~~l~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~l------- 266 (380)
.+..++......-.++.++|.++.++.+.+.+... ...+-+|.|+||+|||.++..+|...
T Consensus 155 ~y~~dlt~~Ar~gklDPvIGRd~EI~r~iqIL~RR------------~KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~ 222 (786)
T COG0542 155 KYTRDLTELAREGKLDPVIGRDEEIRRTIQILSRR------------TKNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPE 222 (786)
T ss_pred HHhhhhHHHHhcCCCCCCcChHHHHHHHHHHHhcc------------CCCCCeEecCCCCCHHHHHHHHHHHHhcCCCCH
Confidence 45566666667778999999999999988887553 23678999999999999999999876
Q ss_pred ---CCeEEEEecchhhh--hhccchHHHHHHHHHHHHhcCCeEEEEcCcchhhhhccccchhhHHHHHHHHHHHHHhcCC
Q 016911 267 ---KTTFFNISASSVVS--KWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGL 341 (380)
Q Consensus 267 ---~~~~v~v~~s~l~~--~~~ge~e~~l~~lf~~A~~~~p~ILfIDEiD~l~~~~~~~~~~~~~~~~i~~~Ll~~ldgl 341 (380)
+..++.++.+.+.. +|.|+.+.+++.+........+.||||||++.+.+.....+...+. .+.|...+
T Consensus 223 ~L~~~~i~sLD~g~LvAGakyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DA----aNiLKPaL--- 295 (786)
T COG0542 223 SLKDKRIYSLDLGSLVAGAKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDA----ANLLKPAL--- 295 (786)
T ss_pred HHcCCEEEEecHHHHhccccccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccch----hhhhHHHH---
Confidence 67788999888874 5889999999999999998889999999999998764321111222 22233333
Q ss_pred ccCCCcEEEEEEeCCCC-----CchHHHHhcccceeEecCCCC
Q 016911 342 TQSDELVFVLAATNLPW-----ELDAAMLRRLEKRVSFSLIAL 379 (380)
Q Consensus 342 ~~~~~~VlVIatTN~~~-----~Ld~aLlrRF~~~I~~plPd~ 379 (380)
..+.+-+|++|+..+ +-|+||-|||.. +.+.-|+.
T Consensus 296 --ARGeL~~IGATT~~EYRk~iEKD~AL~RRFQ~-V~V~EPs~ 335 (786)
T COG0542 296 --ARGELRCIGATTLDEYRKYIEKDAALERRFQK-VLVDEPSV 335 (786)
T ss_pred --hcCCeEEEEeccHHHHHHHhhhchHHHhcCce-eeCCCCCH
Confidence 234466788886543 478999999975 77777764
No 117
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.17 E-value=2.6e-10 Score=121.67 Aligned_cols=142 Identities=23% Similarity=0.287 Sum_probs=98.7
Q ss_pred CCCCccccccchHHHHHHHHHHHhccccCcccccccCCCCceEEEEcCCCCcHHHHHHHHHHhcCCe-------------
Q 016911 203 SPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT------------- 269 (380)
Q Consensus 203 ~p~~~~~~l~Gl~~~k~~L~~~l~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~l~~~------------- 269 (380)
.+...|++++|++.+++.|...+... +-..++||+||+|+|||++|+++|+.++..
T Consensus 10 yRP~~f~~liGq~~i~~~L~~~l~~~-----------rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg~C 78 (620)
T PRK14948 10 YRPQRFDELVGQEAIATTLKNALISN-----------RIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCGKC 78 (620)
T ss_pred hCCCcHhhccChHHHHHHHHHHHHcC-----------CCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCccc
Confidence 35567999999999999998876431 123579999999999999999999998642
Q ss_pred -------------EEEEecchhhhhhccchHHHHHHHHHHHHh----cCCeEEEEcCcchhhhhccccchhhHHHHHHHH
Q 016911 270 -------------FFNISASSVVSKWRGDSEKLIKVLFELARH----HAPSTIFLDEIDAIISQRGEARSEHEASRRLKT 332 (380)
Q Consensus 270 -------------~v~v~~s~l~~~~~ge~e~~l~~lf~~A~~----~~p~ILfIDEiD~l~~~~~~~~~~~~~~~~i~~ 332 (380)
++.++.. ....-..++.+...+.. ....|++|||+|.+.. ...+
T Consensus 79 ~~C~~i~~g~h~D~~ei~~~------~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~-------------~a~n 139 (620)
T PRK14948 79 ELCRAIAAGNALDVIEIDAA------SNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLST-------------AAFN 139 (620)
T ss_pred HHHHHHhcCCCccEEEEecc------ccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCH-------------HHHH
Confidence 1122211 11233455666655542 2346999999998832 2346
Q ss_pred HHHHHhcCCccCCCcEEEEEEeCCCCCchHHHHhcccceeEecCCC
Q 016911 333 ELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRVSFSLIA 378 (380)
Q Consensus 333 ~Ll~~ldgl~~~~~~VlVIatTN~~~~Ld~aLlrRF~~~I~~plPd 378 (380)
.|+..++. ....+++|++|+.++.+.+++++|+. .++|+.|+
T Consensus 140 aLLK~LEe---Pp~~tvfIL~t~~~~~llpTIrSRc~-~~~f~~l~ 181 (620)
T PRK14948 140 ALLKTLEE---PPPRVVFVLATTDPQRVLPTIISRCQ-RFDFRRIP 181 (620)
T ss_pred HHHHHHhc---CCcCeEEEEEeCChhhhhHHHHhhee-EEEecCCC
Confidence 67777753 34456777788888889999999984 46666553
No 118
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=99.17 E-value=3e-10 Score=117.15 Aligned_cols=142 Identities=21% Similarity=0.268 Sum_probs=95.2
Q ss_pred CCCCccccccchHHHHHHHHHHHhccccCcccccccCCCCceEEEEcCCCCcHHHHHHHHHHhcCCe-------------
Q 016911 203 SPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT------------- 269 (380)
Q Consensus 203 ~p~~~~~~l~Gl~~~k~~L~~~l~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~l~~~------------- 269 (380)
.+..+|++++|++.+++.+...+... +.+..+||+||||+|||++|+++|+.+...
T Consensus 11 yRP~~~~diiGq~~~v~~L~~~i~~~-----------~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~ 79 (451)
T PRK06305 11 YRPQTFSEILGQDAVVAVLKNALRFN-----------RAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCA 79 (451)
T ss_pred hCCCCHHHhcCcHHHHHHHHHHHHcC-----------CCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccH
Confidence 35578999999999999988876431 234679999999999999999999987431
Q ss_pred ------------EEEEecchhhhhhccchHHHHHHHHHHH----HhcCCeEEEEcCcchhhhhccccchhhHHHHHHHHH
Q 016911 270 ------------FFNISASSVVSKWRGDSEKLIKVLFELA----RHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTE 333 (380)
Q Consensus 270 ------------~v~v~~s~l~~~~~ge~e~~l~~lf~~A----~~~~p~ILfIDEiD~l~~~~~~~~~~~~~~~~i~~~ 333 (380)
++.+++... . .-..++.+.+.. ......|++|||+|.+... ..+.
T Consensus 80 ~C~~i~~~~~~d~~~i~g~~~----~--gid~ir~i~~~l~~~~~~~~~kvvIIdead~lt~~-------------~~n~ 140 (451)
T PRK06305 80 SCKEISSGTSLDVLEIDGASH----R--GIEDIRQINETVLFTPSKSRYKIYIIDEVHMLTKE-------------AFNS 140 (451)
T ss_pred HHHHHhcCCCCceEEeecccc----C--CHHHHHHHHHHHHhhhhcCCCEEEEEecHHhhCHH-------------HHHH
Confidence 222322111 0 011222222211 2234679999999988432 3456
Q ss_pred HHHHhcCCccCCCcEEEEEEeCCCCCchHHHHhcccceeEecCCC
Q 016911 334 LLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRVSFSLIA 378 (380)
Q Consensus 334 Ll~~ldgl~~~~~~VlVIatTN~~~~Ld~aLlrRF~~~I~~plPd 378 (380)
|+..++. ....+++|++|+.+..+.+++++|+. .++|+.++
T Consensus 141 LLk~lEe---p~~~~~~Il~t~~~~kl~~tI~sRc~-~v~f~~l~ 181 (451)
T PRK06305 141 LLKTLEE---PPQHVKFFLATTEIHKIPGTILSRCQ-KMHLKRIP 181 (451)
T ss_pred HHHHhhc---CCCCceEEEEeCChHhcchHHHHhce-EEeCCCCC
Confidence 7777754 33456677788888889999999985 56776554
No 119
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.16 E-value=1.3e-10 Score=120.89 Aligned_cols=136 Identities=45% Similarity=0.715 Sum_probs=123.0
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHhcCCeEEEEecchhhhhhccchHHHHHHHHHHHHhcCCeEEEEcCcchhhhhcc
Q 016911 239 LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRG 318 (380)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~la~ala~~l~~~~v~v~~s~l~~~~~ge~e~~l~~lf~~A~~~~p~ILfIDEiD~l~~~~~ 318 (380)
..++.+++++||||+|||+++++++.. +..+..++..+...++.++.+...+.+|..+....|+++++||+|.+.+.+.
T Consensus 15 ~~~~~~v~~~g~~~~~~t~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ii~~d~~~~~~~~~~ 93 (494)
T COG0464 15 IEPPKGVLLHGPPGTGKTLLARALANE-GAEFLSINGPEILSKYVGESELRLRELFEEAEKLAPSIIFIDEIDALAPKRS 93 (494)
T ss_pred CCCCCCceeeCCCCCchhHHHHHHHhc-cCcccccCcchhhhhhhhHHHHHHHHHHHHHHHhCCCeEeechhhhcccCcc
Confidence 678899999999999999999999999 6666889999999999999999999999999999999999999999998876
Q ss_pred ccchhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCCCCCchHHHHh--cccceeEecCCCC
Q 016911 319 EARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLR--RLEKRVSFSLIAL 379 (380)
Q Consensus 319 ~~~~~~~~~~~i~~~Ll~~ldgl~~~~~~VlVIatTN~~~~Ld~aLlr--RF~~~I~~plPd~ 379 (380)
. ......+.+..+++..++++. ... +++++.+|++..+++++++ ||+..+.+++|+.
T Consensus 94 ~--~~~~~~~~v~~~l~~~~d~~~-~~~-v~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 152 (494)
T COG0464 94 S--DQGEVERRVVAQLLALMDGLK-RGQ-VIVIGATNRPDGLDPAKRRPGRFDREIEVNLPDE 152 (494)
T ss_pred c--cccchhhHHHHHHHHhccccc-CCc-eEEEeecCCccccChhHhCccccceeeecCCCCH
Confidence 5 344566788999999999998 566 8899999999999999998 9999999999874
No 120
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.16 E-value=2e-10 Score=116.67 Aligned_cols=143 Identities=21% Similarity=0.265 Sum_probs=92.6
Q ss_pred cCCCCccccccchHHHHHHHHHHHhccccCcccccccCCCCceEEEEcCCCCcHHHHHHHHHHhcCCe------------
Q 016911 202 GSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT------------ 269 (380)
Q Consensus 202 ~~p~~~~~~l~Gl~~~k~~L~~~l~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~l~~~------------ 269 (380)
..+...|++++|++.+++.|...+... +.+..+||+||||+|||++|+++|+.+...
T Consensus 9 k~RP~~~~eiiGq~~~~~~L~~~~~~~-----------~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~ 77 (397)
T PRK14955 9 KYRPKKFADITAQEHITRTIQNSLRMG-----------RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEV 77 (397)
T ss_pred hcCCCcHhhccChHHHHHHHHHHHHhC-----------CcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccC
Confidence 346678999999999999988876431 234569999999999999999999988542
Q ss_pred --------------------EEEEecchhhhhhccchHHHHHHHHHHHH----hcCCeEEEEcCcchhhhhccccchhhH
Q 016911 270 --------------------FFNISASSVVSKWRGDSEKLIKVLFELAR----HHAPSTIFLDEIDAIISQRGEARSEHE 325 (380)
Q Consensus 270 --------------------~v~v~~s~l~~~~~ge~e~~l~~lf~~A~----~~~p~ILfIDEiD~l~~~~~~~~~~~~ 325 (380)
++.++... ...-..++.+.+.+. .....|++|||+|.+...
T Consensus 78 ~~~c~~c~~c~~~~~~~~~n~~~~~~~~------~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~~--------- 142 (397)
T PRK14955 78 TEPCGECESCRDFDAGTSLNISEFDAAS------NNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSIA--------- 142 (397)
T ss_pred CCCCCCCHHHHHHhcCCCCCeEeecccc------cCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCHH---------
Confidence 11111110 011233444433332 123469999999988431
Q ss_pred HHHHHHHHHHHHhcCCccCCCcEEEEEEeCCCCCchHHHHhcccceeEecCCC
Q 016911 326 ASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRVSFSLIA 378 (380)
Q Consensus 326 ~~~~i~~~Ll~~ldgl~~~~~~VlVIatTN~~~~Ld~aLlrRF~~~I~~plPd 378 (380)
..+.|+..++ ......++|.+|+.+..+.+++++|+. .++|+.++
T Consensus 143 ----~~~~LLk~LE---ep~~~t~~Il~t~~~~kl~~tl~sR~~-~v~f~~l~ 187 (397)
T PRK14955 143 ----AFNAFLKTLE---EPPPHAIFIFATTELHKIPATIASRCQ-RFNFKRIP 187 (397)
T ss_pred ----HHHHHHHHHh---cCCCCeEEEEEeCChHHhHHHHHHHHH-HhhcCCCC
Confidence 2345666664 233345566677777888889999875 46665543
No 121
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=99.16 E-value=3.1e-11 Score=111.70 Aligned_cols=45 Identities=47% Similarity=0.674 Sum_probs=36.7
Q ss_pred cccccchHHHHHHHHHHHhccccCcccccccCCCCceEEEEcCCCCcHHHHHHHHHHhc
Q 016911 208 WESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC 266 (380)
Q Consensus 208 ~~~l~Gl~~~k~~L~~~l~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~l 266 (380)
|++|+|++.+|+.+.-+.. .+.++|+.||||||||++|+.+...+
T Consensus 2 f~dI~GQe~aKrAL~iAAa--------------G~h~lLl~GppGtGKTmlA~~l~~lL 46 (206)
T PF01078_consen 2 FSDIVGQEEAKRALEIAAA--------------GGHHLLLIGPPGTGKTMLARRLPSLL 46 (206)
T ss_dssp TCCSSSTHHHHHHHHHHHH--------------CC--EEEES-CCCTHHHHHHHHHHCS
T ss_pred hhhhcCcHHHHHHHHHHHc--------------CCCCeEEECCCCCCHHHHHHHHHHhC
Confidence 6899999999999886542 24799999999999999999999877
No 122
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.15 E-value=3e-10 Score=118.10 Aligned_cols=143 Identities=22% Similarity=0.255 Sum_probs=94.2
Q ss_pred cCCCCccccccchHHHHHHHHHHHhccccCcccccccCCCCceEEEEcCCCCcHHHHHHHHHHhcCCe------------
Q 016911 202 GSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT------------ 269 (380)
Q Consensus 202 ~~p~~~~~~l~Gl~~~k~~L~~~l~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~l~~~------------ 269 (380)
..+...|++++|++.+++.+...+... ..+..+||+||+|+|||++|+.+|..++..
T Consensus 9 kyRP~~f~diiGq~~i~~~L~~~i~~~-----------~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~ 77 (486)
T PRK14953 9 KYRPKFFKEVIGQEIVVRILKNAVKLQ-----------RVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCE 77 (486)
T ss_pred hhCCCcHHHccChHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccH
Confidence 346678999999999999998877431 233568899999999999999999988531
Q ss_pred ------------EEEEecchhhhhhccchHHHHHHHHHHHHh----cCCeEEEEcCcchhhhhccccchhhHHHHHHHHH
Q 016911 270 ------------FFNISASSVVSKWRGDSEKLIKVLFELARH----HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTE 333 (380)
Q Consensus 270 ------------~v~v~~s~l~~~~~ge~e~~l~~lf~~A~~----~~p~ILfIDEiD~l~~~~~~~~~~~~~~~~i~~~ 333 (380)
++.++.+. ...-..++.+...+.. ..+.|++|||+|.+... ..+.
T Consensus 78 nc~~i~~g~~~d~~eidaas------~~gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~-------------a~na 138 (486)
T PRK14953 78 NCVEIDKGSFPDLIEIDAAS------NRGIDDIRALRDAVSYTPIKGKYKVYIIDEAHMLTKE-------------AFNA 138 (486)
T ss_pred HHHHHhcCCCCcEEEEeCcc------CCCHHHHHHHHHHHHhCcccCCeeEEEEEChhhcCHH-------------HHHH
Confidence 11121110 0112223444444332 23569999999987421 2355
Q ss_pred HHHHhcCCccCCCcEEEEEEeCCCCCchHHHHhcccceeEecCCC
Q 016911 334 LLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRVSFSLIA 378 (380)
Q Consensus 334 Ll~~ldgl~~~~~~VlVIatTN~~~~Ld~aLlrRF~~~I~~plPd 378 (380)
|+..++. ....+++|.+|+.++.+.+++++|+. .+.|+.|+
T Consensus 139 LLk~LEe---pp~~~v~Il~tt~~~kl~~tI~SRc~-~i~f~~ls 179 (486)
T PRK14953 139 LLKTLEE---PPPRTIFILCTTEYDKIPPTILSRCQ-RFIFSKPT 179 (486)
T ss_pred HHHHHhc---CCCCeEEEEEECCHHHHHHHHHHhce-EEEcCCCC
Confidence 6666643 33345566667777888899999985 57776664
No 123
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.15 E-value=3.2e-10 Score=105.19 Aligned_cols=137 Identities=16% Similarity=0.225 Sum_probs=81.7
Q ss_pred cccccc--chHHHHHHHHHHHhccccCcccccccCCCCceEEEEcCCCCcHHHHHHHHHHhc---CCeEEEEecchhhhh
Q 016911 207 KWESIK--GLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSK 281 (380)
Q Consensus 207 ~~~~l~--Gl~~~k~~L~~~l~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~l---~~~~v~v~~s~l~~~ 281 (380)
++++.+ +...+++.+++.+. .....+++|+||||||||++|++++..+ +.+++.++++.+...
T Consensus 13 ~~~~~~~~~~~~~~~~l~~~~~------------~~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~~~~ 80 (226)
T TIGR03420 13 TFDNFYAGGNAELLAALRQLAA------------GKGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAELAQA 80 (226)
T ss_pred hhcCcCcCCcHHHHHHHHHHHh------------cCCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHHHHh
Confidence 455554 35567777776542 1345789999999999999999999877 467888999887543
Q ss_pred hccchHHHHHHHHHHHHhcCCeEEEEcCcchhhhhccccchhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCC-CCCc
Q 016911 282 WRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNL-PWEL 360 (380)
Q Consensus 282 ~~ge~e~~l~~lf~~A~~~~p~ILfIDEiD~l~~~~~~~~~~~~~~~~i~~~Ll~~ldgl~~~~~~VlVIatTN~-~~~L 360 (380)
. ..++.... ...+|+|||++.+..... ....+...++....... . +|.|++. +..+
T Consensus 81 ~--------~~~~~~~~--~~~lLvIDdi~~l~~~~~-----------~~~~L~~~l~~~~~~~~-~-iIits~~~~~~~ 137 (226)
T TIGR03420 81 D--------PEVLEGLE--QADLVCLDDVEAIAGQPE-----------WQEALFHLYNRVREAGG-R-LLIAGRAAPAQL 137 (226)
T ss_pred H--------HHHHhhcc--cCCEEEEeChhhhcCChH-----------HHHHHHHHHHHHHHcCC-e-EEEECCCChHHC
Confidence 2 12222222 246999999998843210 01122222222122222 3 4445553 3332
Q ss_pred ---hHHHHhccc--ceeEecCCC
Q 016911 361 ---DAAMLRRLE--KRVSFSLIA 378 (380)
Q Consensus 361 ---d~aLlrRF~--~~I~~plPd 378 (380)
.+.+.+|+. ..+.+|.|+
T Consensus 138 ~~~~~~L~~r~~~~~~i~l~~l~ 160 (226)
T TIGR03420 138 PLRLPDLRTRLAWGLVFQLPPLS 160 (226)
T ss_pred CcccHHHHHHHhcCeeEecCCCC
Confidence 278888885 455666554
No 124
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=99.15 E-value=1.8e-10 Score=114.04 Aligned_cols=142 Identities=25% Similarity=0.305 Sum_probs=92.7
Q ss_pred cccchHHHHHHHHHHHhccccCcccccccCCCCceEEEEcCCCCcHHHHHHHHHHhcCCeEEEEecchhhhh--hccchH
Q 016911 210 SIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSK--WRGDSE 287 (380)
Q Consensus 210 ~l~Gl~~~k~~L~~~l~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~l~~~~v~v~~s~l~~~--~~ge~e 287 (380)
.++|.++++..+...+ ..+.++||.||||+|||++|+++|..++.+++.+.|...... ..|...
T Consensus 25 ~~~g~~~~~~~~l~a~--------------~~~~~vll~G~PG~gKT~la~~lA~~l~~~~~~i~~t~~l~p~d~~G~~~ 90 (329)
T COG0714 25 VVVGDEEVIELALLAL--------------LAGGHVLLEGPPGVGKTLLARALARALGLPFVRIQCTPDLLPSDLLGTYA 90 (329)
T ss_pred eeeccHHHHHHHHHHH--------------HcCCCEEEECCCCccHHHHHHHHHHHhCCCeEEEecCCCCCHHHhcCchh
Confidence 3667676666555444 235799999999999999999999999999999999744322 222221
Q ss_pred HHHH----HHHHHHHh--cCC--eEEEEcCcchhhhhccccchhhHHHHHHHHHHHHHhcCC----ccC-----CCcEEE
Q 016911 288 KLIK----VLFELARH--HAP--STIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGL----TQS-----DELVFV 350 (380)
Q Consensus 288 ~~l~----~lf~~A~~--~~p--~ILfIDEiD~l~~~~~~~~~~~~~~~~i~~~Ll~~ldgl----~~~-----~~~VlV 350 (380)
-..+ ..+..... ... +|+++|||+...++ +.+.|+..|+.. ... ....+|
T Consensus 91 ~~~~~~~~~~~~~~~gpl~~~~~~ill~DEInra~p~-------------~q~aLl~~l~e~~vtv~~~~~~~~~~~f~v 157 (329)
T COG0714 91 YAALLLEPGEFRFVPGPLFAAVRVILLLDEINRAPPE-------------VQNALLEALEERQVTVPGLTTIRLPPPFIV 157 (329)
T ss_pred HhhhhccCCeEEEecCCcccccceEEEEeccccCCHH-------------HHHHHHHHHhCcEEEECCcCCcCCCCCCEE
Confidence 1111 00110000 001 39999999887442 445566655541 111 245778
Q ss_pred EEEeCC-----CCCchHHHHhcccceeEecCCC
Q 016911 351 LAATNL-----PWELDAAMLRRLEKRVSFSLIA 378 (380)
Q Consensus 351 IatTN~-----~~~Ld~aLlrRF~~~I~~plPd 378 (380)
|+|+|. ...+++++++||...+.++.|+
T Consensus 158 iaT~Np~e~~g~~~l~eA~ldRf~~~~~v~yp~ 190 (329)
T COG0714 158 IATQNPGEYEGTYPLPEALLDRFLLRIYVDYPD 190 (329)
T ss_pred EEccCccccCCCcCCCHHHHhhEEEEEecCCCC
Confidence 888893 3458999999998889999884
No 125
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.15 E-value=1.9e-10 Score=124.51 Aligned_cols=137 Identities=23% Similarity=0.392 Sum_probs=89.0
Q ss_pred CCCccccccchHHHHH---HHHHHHhccccCcccccccCCCCceEEEEcCCCCcHHHHHHHHHHhcCCeEEEEecchhhh
Q 016911 204 PDVKWESIKGLENAKR---LLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVS 280 (380)
Q Consensus 204 p~~~~~~l~Gl~~~k~---~L~~~l~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~l~~~~v~v~~s~l~~ 280 (380)
+..++++++|++..+. .+.+.+.. ....+++|+|||||||||+|+++|+..+.+++.+++.....
T Consensus 23 RP~tldd~vGQe~ii~~~~~L~~~i~~------------~~~~slLL~GPpGtGKTTLA~aIA~~~~~~f~~lna~~~~i 90 (725)
T PRK13341 23 RPRTLEEFVGQDHILGEGRLLRRAIKA------------DRVGSLILYGPPGVGKTTLARIIANHTRAHFSSLNAVLAGV 90 (725)
T ss_pred CCCcHHHhcCcHHHhhhhHHHHHHHhc------------CCCceEEEECCCCCCHHHHHHHHHHHhcCcceeehhhhhhh
Confidence 4567899999998875 34444321 22357999999999999999999999999998888753211
Q ss_pred hhccchHHHHHHHHHHH-----HhcCCeEEEEcCcchhhhhccccchhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeC
Q 016911 281 KWRGDSEKLIKVLFELA-----RHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATN 355 (380)
Q Consensus 281 ~~~ge~e~~l~~lf~~A-----~~~~p~ILfIDEiD~l~~~~~~~~~~~~~~~~i~~~Ll~~ldgl~~~~~~VlVIatTN 355 (380)
+.++..+..+ ....+.+|||||+|.+... ..+.|+..++ .+.+++|++|+
T Consensus 91 -------~dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~-------------qQdaLL~~lE-----~g~IiLI~aTT 145 (725)
T PRK13341 91 -------KDLRAEVDRAKERLERHGKRTILFIDEVHRFNKA-------------QQDALLPWVE-----NGTITLIGATT 145 (725)
T ss_pred -------HHHHHHHHHHHHHhhhcCCceEEEEeChhhCCHH-------------HHHHHHHHhc-----CceEEEEEecC
Confidence 1122222222 1124579999999988432 1233555443 23466666553
Q ss_pred C--CCCchHHHHhcccceeEecCCC
Q 016911 356 L--PWELDAAMLRRLEKRVSFSLIA 378 (380)
Q Consensus 356 ~--~~~Ld~aLlrRF~~~I~~plPd 378 (380)
. ...+++++++|+. .+.|+.++
T Consensus 146 enp~~~l~~aL~SR~~-v~~l~pLs 169 (725)
T PRK13341 146 ENPYFEVNKALVSRSR-LFRLKSLS 169 (725)
T ss_pred CChHhhhhhHhhcccc-ceecCCCC
Confidence 3 3468899999974 56666654
No 126
>PRK08084 DNA replication initiation factor; Provisional
Probab=99.14 E-value=4.9e-10 Score=105.94 Aligned_cols=142 Identities=15% Similarity=0.178 Sum_probs=78.6
Q ss_pred CCCcccccc-c-hHHHHHHHHHHHhccccCcccccccCCCCceEEEEcCCCCcHHHHHHHHHHhc---CCeEEEEecchh
Q 016911 204 PDVKWESIK-G-LENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSV 278 (380)
Q Consensus 204 p~~~~~~l~-G-l~~~k~~L~~~l~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~l---~~~~v~v~~s~l 278 (380)
+..+|++.+ | ...+...+...... .....++|+||||||||+|++++++.+ +..+.+++....
T Consensus 17 ~~~~fd~f~~~~n~~a~~~l~~~~~~------------~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~~ 84 (235)
T PRK08084 17 DDETFASFYPGDNDSLLAALQNALRQ------------EHSGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDKR 84 (235)
T ss_pred CcCCccccccCccHHHHHHHHHHHhC------------CCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHHH
Confidence 334566655 4 34455555544311 223589999999999999999999876 344555555443
Q ss_pred hhhhccchHHHHHHHHHHHHhcCCeEEEEcCcchhhhhccccchhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCCCC
Q 016911 279 VSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPW 358 (380)
Q Consensus 279 ~~~~~ge~e~~l~~lf~~A~~~~p~ILfIDEiD~l~~~~~~~~~~~~~~~~i~~~Ll~~ldgl~~~~~~VlVIatTN~~~ 358 (380)
... ...+.+.... .++|+|||++.+..+.. ....+...++......+..+++++++.|.
T Consensus 85 ~~~--------~~~~~~~~~~--~dlliiDdi~~~~~~~~-----------~~~~lf~l~n~~~e~g~~~li~ts~~~p~ 143 (235)
T PRK08084 85 AWF--------VPEVLEGMEQ--LSLVCIDNIECIAGDEL-----------WEMAIFDLYNRILESGRTRLLITGDRPPR 143 (235)
T ss_pred hhh--------hHHHHHHhhh--CCEEEEeChhhhcCCHH-----------HHHHHHHHHHHHHHcCCCeEEEeCCCChH
Confidence 211 1111222222 25899999998854311 11122222222222222234444445554
Q ss_pred C---chHHHHhccc--ceeEecCCC
Q 016911 359 E---LDAAMLRRLE--KRVSFSLIA 378 (380)
Q Consensus 359 ~---Ld~aLlrRF~--~~I~~plPd 378 (380)
. +.+.|++|+. .++.+..|+
T Consensus 144 ~l~~~~~~L~SRl~~g~~~~l~~~~ 168 (235)
T PRK08084 144 QLNLGLPDLASRLDWGQIYKLQPLS 168 (235)
T ss_pred HcCcccHHHHHHHhCCceeeecCCC
Confidence 4 6799999996 566666665
No 127
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.14 E-value=6e-11 Score=115.08 Aligned_cols=133 Identities=27% Similarity=0.402 Sum_probs=89.0
Q ss_pred ccccchHHHHHHHHHHHhccccCcccc---cccCCCCceEEEEcCCCCcHHHHHHHHHHhcCCeEEEEecchhhh-hhcc
Q 016911 209 ESIKGLENAKRLLKEAVVMPIKYPKYF---TGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVS-KWRG 284 (380)
Q Consensus 209 ~~l~Gl~~~k~~L~~~l~~~l~~~~~~---~~~~~~~~~vLL~GppGtGKT~la~ala~~l~~~~v~v~~s~l~~-~~~g 284 (380)
+-++|++.+|+.|.-++....++.... ..+--...++||.||+|||||.||+.+|..++.||...+++.+.. .|+|
T Consensus 61 ~YVIGQe~AKKvLsVAVYNHYKRl~~~~~~~dvEL~KSNILLiGPTGsGKTlLAqTLAk~LnVPFaiADATtLTEAGYVG 140 (408)
T COG1219 61 EYVIGQEQAKKVLSVAVYNHYKRLNNKEDNDDVELSKSNILLIGPTGSGKTLLAQTLAKILNVPFAIADATTLTEAGYVG 140 (408)
T ss_pred hheecchhhhceeeeeehhHHHHHhccCCCCceeeeeccEEEECCCCCcHHHHHHHHHHHhCCCeeeccccchhhccccc
Confidence 457899999887764443322211111 112223368999999999999999999999999999999988864 5887
Q ss_pred ch-HHHHHHHHHHHH----hcCCeEEEEcCcchhhhhccccchhhHH-HHHHHHHHHHHhcCC
Q 016911 285 DS-EKLIKVLFELAR----HHAPSTIFLDEIDAIISQRGEARSEHEA-SRRLKTELLIQMDGL 341 (380)
Q Consensus 285 e~-e~~l~~lf~~A~----~~~p~ILfIDEiD~l~~~~~~~~~~~~~-~~~i~~~Ll~~ldgl 341 (380)
+. +..+-.+...|. ....+||+|||||++...........++ ..-+++.||..++|-
T Consensus 141 EDVENillkLlqaadydV~rAerGIIyIDEIDKIarkSeN~SITRDVSGEGVQQALLKiiEGT 203 (408)
T COG1219 141 EDVENILLKLLQAADYDVERAERGIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKIIEGT 203 (408)
T ss_pred hhHHHHHHHHHHHcccCHHHHhCCeEEEechhhhhccCCCCCcccccCchHHHHHHHHHHcCc
Confidence 65 444445554433 2235799999999998765433222111 244667788888763
No 128
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=99.14 E-value=4.2e-10 Score=119.51 Aligned_cols=148 Identities=18% Similarity=0.174 Sum_probs=98.1
Q ss_pred CCCCccccccchHHHHHHHHHHHhccccCcccccccCCCCceEEEEcCCCCcHHHHHHHHHHhcCCeEEEEe--------
Q 016911 203 SPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNIS-------- 274 (380)
Q Consensus 203 ~p~~~~~~l~Gl~~~k~~L~~~l~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~l~~~~v~v~-------- 274 (380)
.+..+|++++|++.+++.|...+.. .+.+..+||+||+|+|||++|+++|+.++......+
T Consensus 18 yRP~~f~dliGq~~~v~~L~~~~~~-----------gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~c 86 (598)
T PRK09111 18 YRPQTFDDLIGQEAMVRTLTNAFET-----------GRIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLC 86 (598)
T ss_pred hCCCCHHHhcCcHHHHHHHHHHHHc-----------CCCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccC
Confidence 4567899999999999999987643 133468999999999999999999998864321111
Q ss_pred -----cchhhhhh----------ccchHHHHHHHHHHHHh----cCCeEEEEcCcchhhhhccccchhhHHHHHHHHHHH
Q 016911 275 -----ASSVVSKW----------RGDSEKLIKVLFELARH----HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELL 335 (380)
Q Consensus 275 -----~s~l~~~~----------~ge~e~~l~~lf~~A~~----~~p~ILfIDEiD~l~~~~~~~~~~~~~~~~i~~~Ll 335 (380)
|..+.... ....-..++.+...+.. ....|++|||+|.+.. ...+.|+
T Consensus 87 g~c~~C~~i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~-------------~a~naLL 153 (598)
T PRK09111 87 GVGEHCQAIMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLST-------------AAFNALL 153 (598)
T ss_pred cccHHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCH-------------HHHHHHH
Confidence 11111000 00112344555554442 2357999999998842 2345677
Q ss_pred HHhcCCccCCCcEEEEEEeCCCCCchHHHHhcccceeEecCCC
Q 016911 336 IQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRVSFSLIA 378 (380)
Q Consensus 336 ~~ldgl~~~~~~VlVIatTN~~~~Ld~aLlrRF~~~I~~plPd 378 (380)
..++. ....+.+|.+|+.++.+.+.+++|+. .++|..|+
T Consensus 154 KtLEe---Pp~~~~fIl~tte~~kll~tI~SRcq-~~~f~~l~ 192 (598)
T PRK09111 154 KTLEE---PPPHVKFIFATTEIRKVPVTVLSRCQ-RFDLRRIE 192 (598)
T ss_pred HHHHh---CCCCeEEEEEeCChhhhhHHHHhhee-EEEecCCC
Confidence 77643 34456677778888888889999984 57777664
No 129
>PRK06893 DNA replication initiation factor; Validated
Probab=99.14 E-value=2.8e-10 Score=107.15 Aligned_cols=116 Identities=17% Similarity=0.274 Sum_probs=67.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhc---CCeEEEEecchhhhhhccchHHHHHHHHHHHHhcCCeEEEEcCcchhhhhccc
Q 016911 243 KGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGE 319 (380)
Q Consensus 243 ~~vLL~GppGtGKT~la~ala~~l---~~~~v~v~~s~l~~~~~ge~e~~l~~lf~~A~~~~p~ILfIDEiD~l~~~~~~ 319 (380)
..++|+||||||||+|++++|+++ +....+++...... ....++.... ..++|+|||++.+.+...
T Consensus 40 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~~~~--------~~~~~~~~~~--~~dlLilDDi~~~~~~~~- 108 (229)
T PRK06893 40 PFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKSQY--------FSPAVLENLE--QQDLVCLDDLQAVIGNEE- 108 (229)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHHhhh--------hhHHHHhhcc--cCCEEEEeChhhhcCChH-
Confidence 468999999999999999999886 33444454432111 1112222222 357999999998854321
Q ss_pred cchhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCCCCCch---HHHHhccc--ceeEecCCCC
Q 016911 320 ARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELD---AAMLRRLE--KRVSFSLIAL 379 (380)
Q Consensus 320 ~~~~~~~~~~i~~~Ll~~ldgl~~~~~~VlVIatTN~~~~Ld---~aLlrRF~--~~I~~plPd~ 379 (380)
....++..++........+++++++..|..++ +.+.+|+. ..++++.|+.
T Consensus 109 ----------~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~ 163 (229)
T PRK06893 109 ----------WELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTD 163 (229)
T ss_pred ----------HHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCH
Confidence 11223333333333333344454555565543 88999875 4666666663
No 130
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=99.13 E-value=6.5e-10 Score=118.77 Aligned_cols=70 Identities=26% Similarity=0.391 Sum_probs=52.7
Q ss_pred chhhccCCCCccccccchHHHHHHHHHHHhccccCcccccccCCCCceEEEEcCCCCcHHHHHHHHHHhc----------
Q 016911 197 RDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---------- 266 (380)
Q Consensus 197 ~~~~~~~p~~~~~~l~Gl~~~k~~L~~~l~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~l---------- 266 (380)
+.+....+..+|++++|.+..++.+...+.. ..+.+++|+|||||||||+|+++++..
T Consensus 142 ~~~~~~~rp~~~~~iiGqs~~~~~l~~~ia~------------~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~ 209 (615)
T TIGR02903 142 KSAQSLLRPRAFSEIVGQERAIKALLAKVAS------------PFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAE 209 (615)
T ss_pred hHHhhhcCcCcHHhceeCcHHHHHHHHHHhc------------CCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccC
Confidence 3333444567899999999988877655422 223579999999999999999998755
Q ss_pred CCeEEEEecchh
Q 016911 267 KTTFFNISASSV 278 (380)
Q Consensus 267 ~~~~v~v~~s~l 278 (380)
+.+|+.++|..+
T Consensus 210 ~~~fv~i~~~~l 221 (615)
T TIGR02903 210 DAPFVEVDGTTL 221 (615)
T ss_pred CCCeEEEechhc
Confidence 357899998765
No 131
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=99.13 E-value=8.7e-11 Score=115.77 Aligned_cols=128 Identities=16% Similarity=0.163 Sum_probs=85.1
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHhcCCeEEEEecchhhhh--hccchHHH----------HHHHHHHHHhcCCeEEEEc
Q 016911 241 PWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSK--WRGDSEKL----------IKVLFELARHHAPSTIFLD 308 (380)
Q Consensus 241 ~~~~vLL~GppGtGKT~la~ala~~l~~~~v~v~~s~l~~~--~~ge~e~~----------l~~lf~~A~~~~p~ILfID 308 (380)
..+++||.||||||||++++.+|..++.+++.+++...... ++|...-. ....+..|.. .+.++++|
T Consensus 63 ~~~~ilL~G~pGtGKTtla~~lA~~l~~~~~rV~~~~~l~~~DliG~~~~~l~~g~~~~~f~~GpL~~A~~-~g~illlD 141 (327)
T TIGR01650 63 YDRRVMVQGYHGTGKSTHIEQIAARLNWPCVRVNLDSHVSRIDLVGKDAIVLKDGKQITEFRDGILPWALQ-HNVALCFD 141 (327)
T ss_pred cCCcEEEEeCCCChHHHHHHHHHHHHCCCeEEEEecCCCChhhcCCCceeeccCCcceeEEecCcchhHHh-CCeEEEec
Confidence 34789999999999999999999999999999998765443 34432110 1122333332 36789999
Q ss_pred CcchhhhhccccchhhHHHHHHHHHHHHH-----hcC---CccCCCcEEEEEEeCCCC------------CchHHHHhcc
Q 016911 309 EIDAIISQRGEARSEHEASRRLKTELLIQ-----MDG---LTQSDELVFVLAATNLPW------------ELDAAMLRRL 368 (380)
Q Consensus 309 EiD~l~~~~~~~~~~~~~~~~i~~~Ll~~-----ldg---l~~~~~~VlVIatTN~~~------------~Ld~aLlrRF 368 (380)
|+|...++. ...++.++.. +.+ .-.......||||+|..+ .+++++++||
T Consensus 142 Ein~a~p~~----------~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np~g~Gd~~G~y~Gt~~l~~A~lDRF 211 (327)
T TIGR01650 142 EYDAGRPDV----------MFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANTIGLGDTTGLYHGTQQINQAQMDRW 211 (327)
T ss_pred hhhccCHHH----------HHHHHHHhccCCeEEECCCceEecCCCCeEEEEeeCCCCcCCCCcceeeeecCCHHHHhhe
Confidence 999874431 1223333331 111 011223578999999865 2789999999
Q ss_pred cceeEecCCCC
Q 016911 369 EKRVSFSLIAL 379 (380)
Q Consensus 369 ~~~I~~plPd~ 379 (380)
-.++.++.|+.
T Consensus 212 ~i~~~~~Yp~~ 222 (327)
T TIGR01650 212 SIVTTLNYLEH 222 (327)
T ss_pred eeEeeCCCCCH
Confidence 87778887763
No 132
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.12 E-value=4.5e-10 Score=123.87 Aligned_cols=130 Identities=24% Similarity=0.265 Sum_probs=84.9
Q ss_pred ccccchHHHHHHHHHHHhccccCcccccccCCCCceEEEEcCCCCcHHHHHHHHHHhc---CCeEEEEecchhhhh----
Q 016911 209 ESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSK---- 281 (380)
Q Consensus 209 ~~l~Gl~~~k~~L~~~l~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~l---~~~~v~v~~s~l~~~---- 281 (380)
..++|++.+++.+.+.+....... ....+|...+||+||||+|||.+|+++|..+ ...++.++++++...
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~~gl---~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~~~~~~~~dmse~~~~~~~~ 642 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARAGL---EDPRKPLGVFLLVGPSGVGKTETALALAELLYGGEQNLITINMSEFQEAHTVS 642 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHhcCC---CCCCCCceEEEEECCCCCCHHHHHHHHHHHHhCCCcceEEEeHHHhhhhhhhc
Confidence 578899999999888775431110 0011333458999999999999999999998 457888998876432
Q ss_pred --------hccchHHHHHHHHHHHHhcCCeEEEEcCcchhhhhccccchhhHHHHHHHHHHHHHhcCCc--c------CC
Q 016911 282 --------WRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT--Q------SD 345 (380)
Q Consensus 282 --------~~ge~e~~l~~lf~~A~~~~p~ILfIDEiD~l~~~~~~~~~~~~~~~~i~~~Ll~~ldgl~--~------~~ 345 (380)
|+|..+. ..+....+..+++||+|||+++..+ .+.+.|+..+|.-. . .-
T Consensus 643 ~l~g~~~gyvg~~~~--g~L~~~v~~~p~svvllDEieka~~-------------~v~~~Llq~ld~g~l~d~~Gr~vd~ 707 (852)
T TIGR03345 643 RLKGSPPGYVGYGEG--GVLTEAVRRKPYSVVLLDEVEKAHP-------------DVLELFYQVFDKGVMEDGEGREIDF 707 (852)
T ss_pred cccCCCCCccccccc--chHHHHHHhCCCcEEEEechhhcCH-------------HHHHHHHHHhhcceeecCCCcEEec
Confidence 3332221 1233445567789999999987643 23445555555321 1 11
Q ss_pred CcEEEEEEeCC
Q 016911 346 ELVFVLAATNL 356 (380)
Q Consensus 346 ~~VlVIatTN~ 356 (380)
++.+||.|||.
T Consensus 708 ~n~iiI~TSNl 718 (852)
T TIGR03345 708 KNTVILLTSNA 718 (852)
T ss_pred cccEEEEeCCC
Confidence 45788999986
No 133
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=99.12 E-value=1.5e-10 Score=114.90 Aligned_cols=149 Identities=19% Similarity=0.255 Sum_probs=89.6
Q ss_pred CCccccccchHHHHHHHHHHHhccccCcccccccCCCCceEEEEcCCCCcHHHHHHHHHHhcC-------Ce--EEEEec
Q 016911 205 DVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECK-------TT--FFNISA 275 (380)
Q Consensus 205 ~~~~~~l~Gl~~~k~~L~~~l~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~l~-------~~--~v~v~~ 275 (380)
..+|++++|++.+++.+.-.... ....++||.|+||+|||++|++++..++ .+ +..+.+
T Consensus 4 ~~~f~~i~Gq~~~~~~l~~~~~~------------~~~~~vLl~G~pG~gKT~lar~la~llP~~~~~e~~~~~~~~~~~ 71 (334)
T PRK13407 4 PFPFSAIVGQEEMKQAMVLTAID------------PGIGGVLVFGDRGTGKSTAVRALAALLPLIKAVEGCPVNSARPED 71 (334)
T ss_pred CCCHHHhCCHHHHHHHHHHHHhc------------cCCCcEEEEcCCCCCHHHHHHHHHHHCCCcchhcccccccCcccC
Confidence 45789999999999887743311 1126899999999999999999999983 21 111100
Q ss_pred c-hh--------hh---------------hhccch--HHHH---HHHHH--HHHhcCCeEEEEcCcchhhhhccccchhh
Q 016911 276 S-SV--------VS---------------KWRGDS--EKLI---KVLFE--LARHHAPSTIFLDEIDAIISQRGEARSEH 324 (380)
Q Consensus 276 s-~l--------~~---------------~~~ge~--e~~l---~~lf~--~A~~~~p~ILfIDEiD~l~~~~~~~~~~~ 324 (380)
. +. .. ...|.. ++.+ ...|. .......++||+||++.+.++
T Consensus 72 ~~~~~~~~~~~~~~~~~p~~~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~l~~A~~GiL~lDEInrl~~~-------- 143 (334)
T PRK13407 72 CPEWAHVSSTTMIERPTPVVDLPLGVTEDRVVGALDIERALTRGEKAFEPGLLARANRGYLYIDEVNLLEDH-------- 143 (334)
T ss_pred CcccccccCCcccccCCccccCCCCCCcceeecchhhhhhhhcCCeeecCCceEEcCCCeEEecChHhCCHH--------
Confidence 0 00 00 011100 0000 00011 000112469999999988442
Q ss_pred HHHHHHHHHHHHHhcCCc----------cCCCcEEEEEEeCCCC-CchHHHHhcccceeEecCCC
Q 016911 325 EASRRLKTELLIQMDGLT----------QSDELVFVLAATNLPW-ELDAAMLRRLEKRVSFSLIA 378 (380)
Q Consensus 325 ~~~~~i~~~Ll~~ldgl~----------~~~~~VlVIatTN~~~-~Ld~aLlrRF~~~I~~plPd 378 (380)
+++.|+..|+.-. .....+++|+|+|..+ .+++++++||...+.++.|.
T Consensus 144 -----~q~~Lle~mee~~v~v~r~G~~~~~p~rfiviAt~NP~e~~l~~aLldRF~~~v~v~~~~ 203 (334)
T PRK13407 144 -----IVDLLLDVAQSGENVVEREGLSIRHPARFVLVGSGNPEEGELRPQLLDRFGLSVEVRSPR 203 (334)
T ss_pred -----HHHHHHHHHHcCCeEEEECCeEEecCCCEEEEecCCcccCCCCHHHHhhcceEEEcCCCC
Confidence 3444555553211 1234578888888755 58999999999988888775
No 134
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=99.12 E-value=7.6e-10 Score=107.69 Aligned_cols=141 Identities=28% Similarity=0.313 Sum_probs=90.7
Q ss_pred CCCCccccccchHHHHHHHHHHHhccccCcccccccCCCCceEEEEcCCCCcHHHHHHHHHHhcC-----CeEEEEecch
Q 016911 203 SPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECK-----TTFFNISASS 277 (380)
Q Consensus 203 ~p~~~~~~l~Gl~~~k~~L~~~l~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~l~-----~~~v~v~~s~ 277 (380)
.+..+|++++|.+++++.+...+... ...+++|+||||+|||++++++++.+. ..++.+++++
T Consensus 11 yrP~~~~~~~g~~~~~~~l~~~i~~~------------~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~~~~~~ 78 (319)
T PRK00440 11 YRPRTLDEIVGQEEIVERLKSYVKEK------------NMPHLLFAGPPGTGKTTAALALARELYGEDWRENFLELNASD 78 (319)
T ss_pred hCCCcHHHhcCcHHHHHHHHHHHhCC------------CCCeEEEECCCCCCHHHHHHHHHHHHcCCccccceEEecccc
Confidence 34567999999999999988876431 123689999999999999999999872 2445555443
Q ss_pred hhhhhccchHHHH-HHHHHHHHh-----cCCeEEEEcCcchhhhhccccchhhHHHHHHHHHHHHHhcCCccCCCcEEEE
Q 016911 278 VVSKWRGDSEKLI-KVLFELARH-----HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVL 351 (380)
Q Consensus 278 l~~~~~ge~e~~l-~~lf~~A~~-----~~p~ILfIDEiD~l~~~~~~~~~~~~~~~~i~~~Ll~~ldgl~~~~~~VlVI 351 (380)
..+ ...+ ..+...+.. ..+.+|+|||+|.+... ....|+..++... ....+|
T Consensus 79 ~~~------~~~~~~~i~~~~~~~~~~~~~~~vviiDe~~~l~~~-------------~~~~L~~~le~~~---~~~~lI 136 (319)
T PRK00440 79 ERG------IDVIRNKIKEFARTAPVGGAPFKIIFLDEADNLTSD-------------AQQALRRTMEMYS---QNTRFI 136 (319)
T ss_pred ccc------hHHHHHHHHHHHhcCCCCCCCceEEEEeCcccCCHH-------------HHHHHHHHHhcCC---CCCeEE
Confidence 211 1111 111122221 23569999999988432 1223444554322 234566
Q ss_pred EEeCCCCCchHHHHhcccceeEecCCC
Q 016911 352 AATNLPWELDAAMLRRLEKRVSFSLIA 378 (380)
Q Consensus 352 atTN~~~~Ld~aLlrRF~~~I~~plPd 378 (380)
.++|.+..+.+++.+|+. .++|+.|+
T Consensus 137 l~~~~~~~l~~~l~sr~~-~~~~~~l~ 162 (319)
T PRK00440 137 LSCNYSSKIIDPIQSRCA-VFRFSPLK 162 (319)
T ss_pred EEeCCccccchhHHHHhh-eeeeCCCC
Confidence 778888888888999986 47777665
No 135
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=99.11 E-value=6.1e-10 Score=113.80 Aligned_cols=141 Identities=20% Similarity=0.287 Sum_probs=84.9
Q ss_pred cccccchHHHHHHHHHHHhccccCcccccccCCCCceEEEEcCCCCcHHHHHHHHHHhcCC-------eEEEEecc----
Q 016911 208 WESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKT-------TFFNISAS---- 276 (380)
Q Consensus 208 ~~~l~Gl~~~k~~L~~~l~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~l~~-------~~v~v~~s---- 276 (380)
++++.+.+...+.+...+. ...+++|+||||||||++|+.+|..+.. .++.++.+
T Consensus 174 l~d~~i~e~~le~l~~~L~--------------~~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYe 239 (459)
T PRK11331 174 LNDLFIPETTIETILKRLT--------------IKKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYE 239 (459)
T ss_pred hhcccCCHHHHHHHHHHHh--------------cCCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHH
Confidence 4566666766666665542 3479999999999999999999998743 12333322
Q ss_pred hhhhhhc-c-ch----HHHHHHHHHHHHhc--CCeEEEEcCcchhhhhccccchhhHHHHHHHHHHHHHhcC--------
Q 016911 277 SVVSKWR-G-DS----EKLIKVLFELARHH--APSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDG-------- 340 (380)
Q Consensus 277 ~l~~~~~-g-e~----e~~l~~lf~~A~~~--~p~ILfIDEiD~l~~~~~~~~~~~~~~~~i~~~Ll~~ldg-------- 340 (380)
+++..+. + .. ......+...|... .|.+|+|||++..-..+ +..+++..++.
T Consensus 240 DFI~G~rP~~vgy~~~~G~f~~~~~~A~~~p~~~~vliIDEINRani~k------------iFGel~~lLE~~~rg~~~~ 307 (459)
T PRK11331 240 DFIQGYRPNGVGFRRKDGIFYNFCQQAKEQPEKKYVFIIDEINRANLSK------------VFGEVMMLMEHDKRGENWS 307 (459)
T ss_pred HHhcccCCCCCCeEecCchHHHHHHHHHhcccCCcEEEEehhhccCHHH------------hhhhhhhhccccccccccc
Confidence 2222221 1 00 11222334455432 47899999998653222 11222222220
Q ss_pred -----------CccCCCcEEEEEEeCCCC----CchHHHHhcccceeEec
Q 016911 341 -----------LTQSDELVFVLAATNLPW----ELDAAMLRRLEKRVSFS 375 (380)
Q Consensus 341 -----------l~~~~~~VlVIatTN~~~----~Ld~aLlrRF~~~I~~p 375 (380)
.-.-..++.||||+|..+ .+|.|++|||.. +++.
T Consensus 308 v~l~y~e~d~e~f~iP~Nl~IIgTMNt~Drs~~~lD~AlrRRF~f-i~i~ 356 (459)
T PRK11331 308 VPLTYSENDEERFYVPENVYIIGLMNTADRSLAVVDYALRRRFSF-IDIE 356 (459)
T ss_pred eeeeccccccccccCCCCeEEEEecCccccchhhccHHHHhhhhe-EEec
Confidence 012346799999999998 699999999965 4444
No 136
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=99.11 E-value=5.5e-10 Score=116.90 Aligned_cols=143 Identities=22% Similarity=0.253 Sum_probs=96.9
Q ss_pred cCCCCccccccchHHHHHHHHHHHhccccCcccccccCCCCceEEEEcCCCCcHHHHHHHHHHhcCC-------------
Q 016911 202 GSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKT------------- 268 (380)
Q Consensus 202 ~~p~~~~~~l~Gl~~~k~~L~~~l~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~l~~------------- 268 (380)
..+..+|++++|++.+++.|...+..- +.+..+||+||+|+|||++|+++|+.+..
T Consensus 7 KyRP~~fdeiiGqe~v~~~L~~~I~~g-----------rl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~ 75 (535)
T PRK08451 7 KYRPKHFDELIGQESVSKTLSLALDNN-----------RLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCI 75 (535)
T ss_pred HHCCCCHHHccCcHHHHHHHHHHHHcC-----------CCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccH
Confidence 346678999999999999998876431 23456799999999999999999998731
Q ss_pred -----------eEEEEecchhhhhhccchHHHHHHHHHHHHh----cCCeEEEEcCcchhhhhccccchhhHHHHHHHHH
Q 016911 269 -----------TFFNISASSVVSKWRGDSEKLIKVLFELARH----HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTE 333 (380)
Q Consensus 269 -----------~~v~v~~s~l~~~~~ge~e~~l~~lf~~A~~----~~p~ILfIDEiD~l~~~~~~~~~~~~~~~~i~~~ 333 (380)
.++.++.+.- ..-..++.+...+.. ....|++|||+|.+.. ...+.
T Consensus 76 ~C~~~~~~~h~dv~eldaas~------~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt~-------------~A~NA 136 (535)
T PRK08451 76 QCQSALENRHIDIIEMDAASN------RGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTK-------------EAFNA 136 (535)
T ss_pred HHHHHhhcCCCeEEEeccccc------cCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCH-------------HHHHH
Confidence 2333332210 012334444433221 2246999999998843 23456
Q ss_pred HHHHhcCCccCCCcEEEEEEeCCCCCchHHHHhcccceeEecCCC
Q 016911 334 LLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRVSFSLIA 378 (380)
Q Consensus 334 Ll~~ldgl~~~~~~VlVIatTN~~~~Ld~aLlrRF~~~I~~plPd 378 (380)
|+..++. .+..+.+|.+|+.+..+.+++++|+. .++|..++
T Consensus 137 LLK~LEE---pp~~t~FIL~ttd~~kL~~tI~SRc~-~~~F~~Ls 177 (535)
T PRK08451 137 LLKTLEE---PPSYVKFILATTDPLKLPATILSRTQ-HFRFKQIP 177 (535)
T ss_pred HHHHHhh---cCCceEEEEEECChhhCchHHHhhce-eEEcCCCC
Confidence 7777753 34456677788888899999999974 66776654
No 137
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=99.10 E-value=5.8e-10 Score=104.17 Aligned_cols=135 Identities=13% Similarity=0.162 Sum_probs=81.0
Q ss_pred CCcccccc--chHHHHHHHHHHHhccccCcccccccCCCCceEEEEcCCCCcHHHHHHHHHHhc---CCeEEEEecchhh
Q 016911 205 DVKWESIK--GLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVV 279 (380)
Q Consensus 205 ~~~~~~l~--Gl~~~k~~L~~~l~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~l---~~~~v~v~~s~l~ 279 (380)
..++++.+ +...++..+..... .......++|+||+|||||++|+++++.+ +.+++.+++..+.
T Consensus 14 ~~~~d~f~~~~~~~~~~~l~~~~~-----------~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~~~ 82 (227)
T PRK08903 14 PPTFDNFVAGENAELVARLRELAA-----------GPVADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAASPL 82 (227)
T ss_pred hhhhcccccCCcHHHHHHHHHHHh-----------ccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHHhH
Confidence 34566755 23445555555432 11345789999999999999999999876 6678888887753
Q ss_pred hhhccchHHHHHHHHHHHHhcCCeEEEEcCcchhhhhccccchhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCCCC-
Q 016911 280 SKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPW- 358 (380)
Q Consensus 280 ~~~~ge~e~~l~~lf~~A~~~~p~ILfIDEiD~l~~~~~~~~~~~~~~~~i~~~Ll~~ldgl~~~~~~VlVIatTN~~~- 358 (380)
.. +. ....+++|+|||+|.+.... ...|+..++........+ +|.+++.+.
T Consensus 83 ~~------------~~--~~~~~~~liiDdi~~l~~~~-------------~~~L~~~~~~~~~~~~~~-vl~~~~~~~~ 134 (227)
T PRK08903 83 LA------------FD--FDPEAELYAVDDVERLDDAQ-------------QIALFNLFNRVRAHGQGA-LLVAGPAAPL 134 (227)
T ss_pred HH------------Hh--hcccCCEEEEeChhhcCchH-------------HHHHHHHHHHHHHcCCcE-EEEeCCCCHH
Confidence 22 11 12235799999999873211 112333333222233323 444444332
Q ss_pred --CchHHHHhccc--ceeEecCCC
Q 016911 359 --ELDAAMLRRLE--KRVSFSLIA 378 (380)
Q Consensus 359 --~Ld~aLlrRF~--~~I~~plPd 378 (380)
.+.+.+.+||. ..++++.|+
T Consensus 135 ~~~l~~~L~sr~~~~~~i~l~pl~ 158 (227)
T PRK08903 135 ALPLREDLRTRLGWGLVYELKPLS 158 (227)
T ss_pred hCCCCHHHHHHHhcCeEEEecCCC
Confidence 35688888984 566777665
No 138
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.10 E-value=2.4e-09 Score=107.73 Aligned_cols=156 Identities=22% Similarity=0.260 Sum_probs=98.3
Q ss_pred CCCccccccchHHHHHHHHHHHhccccCcccccccCCCCceEEEEcCCCCcHHHHHHHHHHhc-----CCeEEEEecchh
Q 016911 204 PDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC-----KTTFFNISASSV 278 (380)
Q Consensus 204 p~~~~~~l~Gl~~~k~~L~~~l~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~l-----~~~~v~v~~s~l 278 (380)
+....+.+.|.++.++.+...+...+. ...+.+++++||||+|||++++.+++.+ +..++.++|...
T Consensus 25 ~~~~P~~l~~Re~e~~~l~~~l~~~~~--------~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~ 96 (394)
T PRK00411 25 PDYVPENLPHREEQIEELAFALRPALR--------GSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQID 96 (394)
T ss_pred CCCcCCCCCCHHHHHHHHHHHHHHHhC--------CCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcC
Confidence 333456789999998888877643222 1234679999999999999999999877 467888988643
Q ss_pred hh----------hhcc--------chHHHHHHHHHHHHh-cCCeEEEEcCcchhhhhccccchhhHHHHHHHHHHHHHhc
Q 016911 279 VS----------KWRG--------DSEKLIKVLFELARH-HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMD 339 (380)
Q Consensus 279 ~~----------~~~g--------e~e~~l~~lf~~A~~-~~p~ILfIDEiD~l~~~~~~~~~~~~~~~~i~~~Ll~~ld 339 (380)
.. ...+ ........+...... ..+.||+|||+|.+..... ...+..++..++
T Consensus 97 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~---------~~~l~~l~~~~~ 167 (394)
T PRK00411 97 RTRYAIFSEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEG---------NDVLYSLLRAHE 167 (394)
T ss_pred CCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCC---------chHHHHHHHhhh
Confidence 21 1111 112333444443332 3457999999999972111 113344444443
Q ss_pred CCccCCCcEEEEEEeCCCC---CchHHHHhccc-ceeEecCCC
Q 016911 340 GLTQSDELVFVLAATNLPW---ELDAAMLRRLE-KRVSFSLIA 378 (380)
Q Consensus 340 gl~~~~~~VlVIatTN~~~---~Ld~aLlrRF~-~~I~~plPd 378 (380)
... ..++.+|+++|..+ .+++.+.+||. ..+.|+.++
T Consensus 168 ~~~--~~~v~vI~i~~~~~~~~~l~~~~~s~~~~~~i~f~py~ 208 (394)
T PRK00411 168 EYP--GARIGVIGISSDLTFLYILDPRVKSVFRPEEIYFPPYT 208 (394)
T ss_pred ccC--CCeEEEEEEECCcchhhhcCHHHHhcCCcceeecCCCC
Confidence 322 22577888988764 47788888874 456666554
No 139
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=99.09 E-value=1.7e-10 Score=117.20 Aligned_cols=124 Identities=19% Similarity=0.340 Sum_probs=77.5
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhc-----CCeEEEEecchhhhhhccchHH-HHHHHHHHHHhcCCeEEEEcCcchhhh
Q 016911 242 WKGILLFGPPGTGKTMLAKAVATEC-----KTTFFNISASSVVSKWRGDSEK-LIKVLFELARHHAPSTIFLDEIDAIIS 315 (380)
Q Consensus 242 ~~~vLL~GppGtGKT~la~ala~~l-----~~~~v~v~~s~l~~~~~ge~e~-~l~~lf~~A~~~~p~ILfIDEiD~l~~ 315 (380)
...++|+||||+|||+|++++++++ +..++++++.++...+...... .......... ..++|+|||++.+.+
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~~~--~~dlLiiDDi~~l~~ 213 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEKFTNDFVNALRNNKMEEFKEKYR--SVDLLLIDDIQFLAG 213 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHHHHHHHHHHHHcCCHHHHHHHHH--hCCEEEEehhhhhcC
Confidence 4578999999999999999999887 5678889988876554322111 1112222222 257999999998854
Q ss_pred hccccchhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCCCCC---chHHHHhcccc--eeEecCCCC
Q 016911 316 QRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWE---LDAAMLRRLEK--RVSFSLIAL 379 (380)
Q Consensus 316 ~~~~~~~~~~~~~~i~~~Ll~~ldgl~~~~~~VlVIatTN~~~~---Ld~aLlrRF~~--~I~~plPd~ 379 (380)
... ....++..++.+..... .+||+++..|.. +++.+.+||.. .++++.|+.
T Consensus 214 ~~~-----------~~~~l~~~~n~~~~~~~-~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~ 270 (405)
T TIGR00362 214 KER-----------TQEEFFHTFNALHENGK-QIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDL 270 (405)
T ss_pred CHH-----------HHHHHHHHHHHHHHCCC-CEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCH
Confidence 311 12233333333322333 334544444543 66889999965 688888874
No 140
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.09 E-value=7.5e-10 Score=117.71 Aligned_cols=144 Identities=21% Similarity=0.273 Sum_probs=94.4
Q ss_pred ccCCCCccccccchHHHHHHHHHHHhccccCcccccccCCCCceEEEEcCCCCcHHHHHHHHHHhcCCe-----------
Q 016911 201 RGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT----------- 269 (380)
Q Consensus 201 ~~~p~~~~~~l~Gl~~~k~~L~~~l~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~l~~~----------- 269 (380)
...+..+|++++|++.+++.|...+... +.+..+||+||+|+|||++|+++|+.++..
T Consensus 8 ~kyRP~~~~eiiGq~~~~~~L~~~i~~~-----------~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~ 76 (585)
T PRK14950 8 RKWRSQTFAELVGQEHVVQTLRNAIAEG-----------RVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGT 76 (585)
T ss_pred HHhCCCCHHHhcCCHHHHHHHHHHHHhC-----------CCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCcc
Confidence 3456778999999999999998776431 223568999999999999999999987531
Q ss_pred --------------EEEEecchhhhhhccchHHHHHHHHHHHHh----cCCeEEEEcCcchhhhhccccchhhHHHHHHH
Q 016911 270 --------------FFNISASSVVSKWRGDSEKLIKVLFELARH----HAPSTIFLDEIDAIISQRGEARSEHEASRRLK 331 (380)
Q Consensus 270 --------------~v~v~~s~l~~~~~ge~e~~l~~lf~~A~~----~~p~ILfIDEiD~l~~~~~~~~~~~~~~~~i~ 331 (380)
++.++.+. ...-..++.+...+.. ....|++|||+|.+.. ...
T Consensus 77 c~~c~~i~~~~~~d~~~i~~~~------~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~-------------~a~ 137 (585)
T PRK14950 77 CEMCRAIAEGSAVDVIEMDAAS------HTSVDDAREIIERVQFRPALARYKVYIIDEVHMLST-------------AAF 137 (585)
T ss_pred CHHHHHHhcCCCCeEEEEeccc------cCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCH-------------HHH
Confidence 12222210 0112223333333221 2356999999998742 134
Q ss_pred HHHHHHhcCCccCCCcEEEEEEeCCCCCchHHHHhcccceeEecCCC
Q 016911 332 TELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRVSFSLIA 378 (380)
Q Consensus 332 ~~Ll~~ldgl~~~~~~VlVIatTN~~~~Ld~aLlrRF~~~I~~plPd 378 (380)
+.|+..++. ....+++|.+++..+.+.+.+++|+. .++|+.++
T Consensus 138 naLLk~LEe---pp~~tv~Il~t~~~~kll~tI~SR~~-~i~f~~l~ 180 (585)
T PRK14950 138 NALLKTLEE---PPPHAIFILATTEVHKVPATILSRCQ-RFDFHRHS 180 (585)
T ss_pred HHHHHHHhc---CCCCeEEEEEeCChhhhhHHHHhccc-eeeCCCCC
Confidence 557777653 23446677777777888889999985 46666553
No 141
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.09 E-value=1.1e-09 Score=116.77 Aligned_cols=149 Identities=18% Similarity=0.223 Sum_probs=94.6
Q ss_pred cCCCCccccccchHHHHHHHHHHHhccccCcccccccCCCCceEEEEcCCCCcHHHHHHHHHHhcCCeEEE---------
Q 016911 202 GSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFN--------- 272 (380)
Q Consensus 202 ~~p~~~~~~l~Gl~~~k~~L~~~l~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~l~~~~v~--------- 272 (380)
..+...|++++|++.+++.|+..+..- +-+..+||+||+|+||||+|+.+|+.++..--.
T Consensus 9 kyRP~~f~eivGQe~i~~~L~~~i~~~-----------ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~ 77 (620)
T PRK14954 9 KYRPSKFADITAQEHITHTIQNSLRMD-----------RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEV 77 (620)
T ss_pred HHCCCCHHHhcCcHHHHHHHHHHHHcC-----------CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCcccccccc
Confidence 346678999999999999988876331 223569999999999999999999998652100
Q ss_pred -Eec------chhhh-------hhcc---chHHHHHHHHHHHH----hcCCeEEEEcCcchhhhhccccchhhHHHHHHH
Q 016911 273 -ISA------SSVVS-------KWRG---DSEKLIKVLFELAR----HHAPSTIFLDEIDAIISQRGEARSEHEASRRLK 331 (380)
Q Consensus 273 -v~~------s~l~~-------~~~g---e~e~~l~~lf~~A~----~~~p~ILfIDEiD~l~~~~~~~~~~~~~~~~i~ 331 (380)
-.| ..+.. .+.+ ..-..++.+.+.+. .....|++|||+|.+... ..
T Consensus 78 ~~~Cg~C~sC~~~~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~-------------a~ 144 (620)
T PRK14954 78 TEPCGECESCRDFDAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTA-------------AF 144 (620)
T ss_pred CCCCccCHHHHHHhccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHH-------------HH
Confidence 001 00000 0001 11233444433332 223569999999988421 24
Q ss_pred HHHHHHhcCCccCCCcEEEEEEeCCCCCchHHHHhcccceeEecCCC
Q 016911 332 TELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRVSFSLIA 378 (380)
Q Consensus 332 ~~Ll~~ldgl~~~~~~VlVIatTN~~~~Ld~aLlrRF~~~I~~plPd 378 (380)
+.|+..++. ....+++|.+|+.+..+.+++++|+. .++|..++
T Consensus 145 naLLK~LEe---Pp~~tv~IL~t~~~~kLl~TI~SRc~-~vef~~l~ 187 (620)
T PRK14954 145 NAFLKTLEE---PPPHAIFIFATTELHKIPATIASRCQ-RFNFKRIP 187 (620)
T ss_pred HHHHHHHhC---CCCCeEEEEEeCChhhhhHHHHhhce-EEecCCCC
Confidence 567777753 33445566677777889899999974 56776654
No 142
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=99.08 E-value=7e-10 Score=107.95 Aligned_cols=139 Identities=21% Similarity=0.265 Sum_probs=94.8
Q ss_pred cccchHHHHHHHHHHHhccccCcccccccCCCCceEEEEcCCCCcHHHHHHHHHHhcC----------------------
Q 016911 210 SIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECK---------------------- 267 (380)
Q Consensus 210 ~l~Gl~~~k~~L~~~l~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~l~---------------------- 267 (380)
++++.+.....+........ +.+..+||+||||+|||++|.++|+.+.
T Consensus 2 ~~~~~~~~~~~l~~~~~~~~----------~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~ 71 (325)
T COG0470 2 ELVPWQEAVKRLLVQALESG----------RLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAG 71 (325)
T ss_pred CcccchhHHHHHHHHHHhcC----------CCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhc
Confidence 45666776666666553211 1223599999999999999999999885
Q ss_pred --CeEEEEecchhhhhhccchHHHHHHHHHHHHhc----CCeEEEEcCcchhhhhccccchhhHHHHHHHHHHHHHhcCC
Q 016911 268 --TTFFNISASSVVSKWRGDSEKLIKVLFELARHH----APSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGL 341 (380)
Q Consensus 268 --~~~v~v~~s~l~~~~~ge~e~~l~~lf~~A~~~----~p~ILfIDEiD~l~~~~~~~~~~~~~~~~i~~~Ll~~ldgl 341 (380)
..++.+++++....- .....++.+....... ...|++|||+|.+..+ ..+.++..+
T Consensus 72 ~~~d~lel~~s~~~~~~--i~~~~vr~~~~~~~~~~~~~~~kviiidead~mt~~-------------A~nallk~l--- 133 (325)
T COG0470 72 NHPDFLELNPSDLRKID--IIVEQVRELAEFLSESPLEGGYKVVIIDEADKLTED-------------AANALLKTL--- 133 (325)
T ss_pred CCCceEEecccccCCCc--chHHHHHHHHHHhccCCCCCCceEEEeCcHHHHhHH-------------HHHHHHHHh---
Confidence 467778877654321 1233444444433322 3569999999998542 345566666
Q ss_pred ccCCCcEEEEEEeCCCCCchHHHHhcccceeEecCC
Q 016911 342 TQSDELVFVLAATNLPWELDAAMLRRLEKRVSFSLI 377 (380)
Q Consensus 342 ~~~~~~VlVIatTN~~~~Ld~aLlrRF~~~I~~plP 377 (380)
.....+..+|.+||.++.+-+.+++|+. .+.|+.|
T Consensus 134 Eep~~~~~~il~~n~~~~il~tI~SRc~-~i~f~~~ 168 (325)
T COG0470 134 EEPPKNTRFILITNDPSKILPTIRSRCQ-RIRFKPP 168 (325)
T ss_pred ccCCCCeEEEEEcCChhhccchhhhcce-eeecCCc
Confidence 4456667889999999999999999985 4666544
No 143
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=99.08 E-value=8.9e-11 Score=120.28 Aligned_cols=154 Identities=23% Similarity=0.294 Sum_probs=99.5
Q ss_pred CccccccchHHHHHHHHHHHhccccCcccccccCCCCceEEEEcCCCCcHHHHHHHHHHhc---CCeEEEEecchhhhhh
Q 016911 206 VKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKW 282 (380)
Q Consensus 206 ~~~~~l~Gl~~~k~~L~~~l~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~l---~~~~v~v~~s~l~~~~ 282 (380)
.....++|.+..++++.+.+.. +......|||+|++||||..+|++|+... +.||+.+||..+....
T Consensus 138 ~~~~~liG~S~am~~l~~~i~k----------vA~s~a~VLI~GESGtGKElvAr~IH~~S~R~~~PFVavNcaAip~~l 207 (464)
T COG2204 138 SLGGELVGESPAMQQLRRLIAK----------VAPSDASVLITGESGTGKELVARAIHQASPRAKGPFIAVNCAAIPENL 207 (464)
T ss_pred cccCCceecCHHHHHHHHHHHH----------HhCCCCCEEEECCCCCcHHHHHHHHHhhCcccCCCceeeecccCCHHH
Confidence 4578999999999999887643 23556889999999999999999999988 5699999998664332
Q ss_pred c---------cchHH---HHHHHHHHHHhcCCeEEEEcCcchhhhhccccchhhHHHHHHHHHHHHHhcCCccCCCcEEE
Q 016911 283 R---------GDSEK---LIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFV 350 (380)
Q Consensus 283 ~---------ge~e~---~l~~lf~~A~~~~p~ILfIDEiD~l~~~~~~~~~~~~~~~~i~~~Ll~~ldgl~~~~~~VlV 350 (380)
. |.... .-...|+.|. +++||||||..+..+- +....+.+...-+..+.+-...+-+|.|
T Consensus 208 ~ESELFGhekGAFTGA~~~r~G~fE~A~---GGTLfLDEI~~mpl~~-----Q~kLLRvLqe~~~~rvG~~~~i~vdvRi 279 (464)
T COG2204 208 LESELFGHEKGAFTGAITRRIGRFEQAN---GGTLFLDEIGEMPLEL-----QVKLLRVLQEREFERVGGNKPIKVDVRI 279 (464)
T ss_pred HHHHhhcccccCcCCcccccCcceeEcC---CceEEeeccccCCHHH-----HHHHHHHHHcCeeEecCCCcccceeeEE
Confidence 1 11111 1122455554 6899999999886532 2223333322222333333334456899
Q ss_pred EEEeCCCCCchHHHHh-cccc-------eeEecCCCC
Q 016911 351 LAATNLPWELDAAMLR-RLEK-------RVSFSLIAL 379 (380)
Q Consensus 351 IatTN~~~~Ld~aLlr-RF~~-------~I~~plPd~ 379 (380)
|++||. +|...+.. +|.. ++.+.+|.+
T Consensus 280 IaaT~~--dL~~~v~~G~FReDLyyRLnV~~i~iPpL 314 (464)
T COG2204 280 IAATNR--DLEEEVAAGRFREDLYYRLNVVPLRLPPL 314 (464)
T ss_pred EeecCc--CHHHHHHcCCcHHHHHhhhccceecCCcc
Confidence 999998 55554444 4433 345555543
No 144
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.08 E-value=1.8e-09 Score=119.28 Aligned_cols=155 Identities=24% Similarity=0.285 Sum_probs=98.2
Q ss_pred cccccchHHHHHHHHHHHhccccCcccccccCCCCceEEEEcCCCCcHHHHHHHHHHhc---CCeEEEEecchhhhh---
Q 016911 208 WESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSK--- 281 (380)
Q Consensus 208 ~~~l~Gl~~~k~~L~~~l~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~l---~~~~v~v~~s~l~~~--- 281 (380)
...++|++.+++.+...+....... ...-+|...++|+||||||||++|+++|..+ +.+++.++++++...
T Consensus 567 ~~~viGQ~~ai~~l~~~i~~~~~gl---~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~~~~~~i~id~se~~~~~~~ 643 (857)
T PRK10865 567 HHRVIGQNEAVEAVSNAIRRSRAGL---SDPNRPIGSFLFLGPTGVGKTELCKALANFMFDSDDAMVRIDMSEFMEKHSV 643 (857)
T ss_pred CCeEeCCHHHHHHHHHHHHHHHhcc---cCCCCCCceEEEECCCCCCHHHHHHHHHHHhhcCCCcEEEEEhHHhhhhhhH
Confidence 4678999999999988775421100 0001333568999999999999999999987 457899999876432
Q ss_pred --hccchH-----HHHHHHHHHHHhcCCeEEEEcCcchhhhhccccchhhHHHHHHHHHHHHHhcCC--c------cCCC
Q 016911 282 --WRGDSE-----KLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGL--T------QSDE 346 (380)
Q Consensus 282 --~~ge~e-----~~l~~lf~~A~~~~p~ILfIDEiD~l~~~~~~~~~~~~~~~~i~~~Ll~~ldgl--~------~~~~ 346 (380)
.+|... ..-..+....+....+||+|||++++.+. +.+.|+..++.- . ..-+
T Consensus 644 ~~LiG~~pgy~g~~~~g~l~~~v~~~p~~vLllDEieka~~~-------------v~~~Ll~ile~g~l~d~~gr~vd~r 710 (857)
T PRK10865 644 SRLVGAPPGYVGYEEGGYLTEAVRRRPYSVILLDEVEKAHPD-------------VFNILLQVLDDGRLTDGQGRTVDFR 710 (857)
T ss_pred HHHhCCCCcccccchhHHHHHHHHhCCCCeEEEeehhhCCHH-------------HHHHHHHHHhhCceecCCceEEeec
Confidence 111110 00011223334445589999999977432 344455555421 1 1124
Q ss_pred cEEEEEEeCCCC-------------------------CchHHHHhcccceeEecCCC
Q 016911 347 LVFVLAATNLPW-------------------------ELDAAMLRRLEKRVSFSLIA 378 (380)
Q Consensus 347 ~VlVIatTN~~~-------------------------~Ld~aLlrRF~~~I~~plPd 378 (380)
+.+||+|||... .+.|+|+.|++.++.|..++
T Consensus 711 n~iiI~TSN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PELlnRld~iivF~PL~ 767 (857)
T PRK10865 711 NTVVIMTSNLGSDLIQERFGELDYAHMKELVLGVVSHNFRPEFINRIDEVVVFHPLG 767 (857)
T ss_pred ccEEEEeCCcchHHHHHhccccchHHHHHHHHHHHcccccHHHHHhCCeeEecCCCC
Confidence 466889999731 14478889998888887765
No 145
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=99.08 E-value=1.4e-09 Score=101.94 Aligned_cols=151 Identities=23% Similarity=0.353 Sum_probs=84.7
Q ss_pred CCCcccccc-c--hHHHHHHHHHHHhccccCcccccccCCCCceEEEEcCCCCcHHHHHHHHHHhc-----CCeEEEEec
Q 016911 204 PDVKWESIK-G--LENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC-----KTTFFNISA 275 (380)
Q Consensus 204 p~~~~~~l~-G--l~~~k~~L~~~l~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~l-----~~~~v~v~~ 275 (380)
|..+|++.+ | .+.+...+......+. .....++||||+|+|||+|+++++++. +..++++++
T Consensus 3 ~~~tFdnfv~g~~N~~a~~~~~~ia~~~~----------~~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~ 72 (219)
T PF00308_consen 3 PKYTFDNFVVGESNELAYAAAKAIAENPG----------ERYNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSA 72 (219)
T ss_dssp TT-SCCCS--TTTTHHHHHHHHHHHHSTT----------TSSSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEH
T ss_pred CCCccccCCcCCcHHHHHHHHHHHHhcCC----------CCCCceEEECCCCCCHHHHHHHHHHHHHhccccccceeecH
Confidence 566777774 4 2334444443322210 123468999999999999999999875 567889998
Q ss_pred chhhhhhccchHH-HHHHHHHHHHhcCCeEEEEcCcchhhhhccccchhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEe
Q 016911 276 SSVVSKWRGDSEK-LIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAAT 354 (380)
Q Consensus 276 s~l~~~~~ge~e~-~l~~lf~~A~~~~p~ILfIDEiD~l~~~~~~~~~~~~~~~~i~~~Ll~~ldgl~~~~~~VlVIatT 354 (380)
.++...+...... .+..+..... ..++|+||+++.+.... .+...+...++.+....+ .+||++.
T Consensus 73 ~~f~~~~~~~~~~~~~~~~~~~~~--~~DlL~iDDi~~l~~~~-----------~~q~~lf~l~n~~~~~~k-~li~ts~ 138 (219)
T PF00308_consen 73 EEFIREFADALRDGEIEEFKDRLR--SADLLIIDDIQFLAGKQ-----------RTQEELFHLFNRLIESGK-QLILTSD 138 (219)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHC--TSSEEEEETGGGGTTHH-----------HHHHHHHHHHHHHHHTTS-EEEEEES
T ss_pred HHHHHHHHHHHHcccchhhhhhhh--cCCEEEEecchhhcCch-----------HHHHHHHHHHHHHHhhCC-eEEEEeC
Confidence 8887654432211 1112222222 35799999999985431 133444444444444444 3445444
Q ss_pred CCCCC---chHHHHhcccc--eeEecCCC
Q 016911 355 NLPWE---LDAAMLRRLEK--RVSFSLIA 378 (380)
Q Consensus 355 N~~~~---Ld~aLlrRF~~--~I~~plPd 378 (380)
..|.. +++.+.+||.. .+++..|+
T Consensus 139 ~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd 167 (219)
T PF00308_consen 139 RPPSELSGLLPDLRSRLSWGLVVELQPPD 167 (219)
T ss_dssp S-TTTTTTS-HHHHHHHHCSEEEEE----
T ss_pred CCCccccccChhhhhhHhhcchhhcCCCC
Confidence 55554 67899999976 44555554
No 146
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.08 E-value=9.9e-10 Score=121.03 Aligned_cols=152 Identities=23% Similarity=0.312 Sum_probs=100.0
Q ss_pred ccccchHHHHHHHHHHHhccccCcccccccCCCCceEEEEcCCCCcHHHHHHHHHHhc---CCeEEEEecchhhhh----
Q 016911 209 ESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSK---- 281 (380)
Q Consensus 209 ~~l~Gl~~~k~~L~~~l~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~l---~~~~v~v~~s~l~~~---- 281 (380)
..++|++.+++.+...+.....- +....+|...+||+||+|+|||++|+++|..+ ..+++.++++++...
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~g---l~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~d~s~~~~~~~~~ 585 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVG---LKNPNRPIASFLFSGPTGVGKTELTKALASYFFGSEDAMIRLDMSEYMEKHTVS 585 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhc---ccCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCccceEEEEchhccccccHH
Confidence 57889999999988776542110 01112344568999999999999999999987 457888888766321
Q ss_pred --------hccchHHHHHHHHHHHHhcCCeEEEEcCcchhhhhccccchhhHHHHHHHHHHHHHhcCCc--------cCC
Q 016911 282 --------WRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT--------QSD 345 (380)
Q Consensus 282 --------~~ge~e~~l~~lf~~A~~~~p~ILfIDEiD~l~~~~~~~~~~~~~~~~i~~~Ll~~ldgl~--------~~~ 345 (380)
|+|..+ ...+....+....+||+|||+|++.++ +.+.|+..++.-. ..-
T Consensus 586 ~l~g~~~gyvg~~~--~~~l~~~~~~~p~~VvllDeieka~~~-------------v~~~Llq~le~g~~~d~~g~~v~~ 650 (821)
T CHL00095 586 KLIGSPPGYVGYNE--GGQLTEAVRKKPYTVVLFDEIEKAHPD-------------IFNLLLQILDDGRLTDSKGRTIDF 650 (821)
T ss_pred HhcCCCCcccCcCc--cchHHHHHHhCCCeEEEECChhhCCHH-------------HHHHHHHHhccCceecCCCcEEec
Confidence 222211 123445555566689999999987432 4556666666321 112
Q ss_pred CcEEEEEEeCCCCC-------------------------------------chHHHHhcccceeEecCCC
Q 016911 346 ELVFVLAATNLPWE-------------------------------------LDAAMLRRLEKRVSFSLIA 378 (380)
Q Consensus 346 ~~VlVIatTN~~~~-------------------------------------Ld~aLlrRF~~~I~~plPd 378 (380)
++.+||.|||.... +.|+++.|++.++.|...+
T Consensus 651 ~~~i~I~Tsn~g~~~i~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~f~peflnRid~ii~F~pL~ 720 (821)
T CHL00095 651 KNTLIIMTSNLGSKVIETNSGGLGFELSENQLSEKQYKRLSNLVNEELKQFFRPEFLNRLDEIIVFRQLT 720 (821)
T ss_pred CceEEEEeCCcchHHHHhhccccCCcccccccccccHHHHHHHHHHHHHHhcCHHHhccCCeEEEeCCCC
Confidence 56889999985421 2356778998888887654
No 147
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.06 E-value=1.7e-09 Score=119.65 Aligned_cols=155 Identities=24% Similarity=0.302 Sum_probs=100.3
Q ss_pred cccccchHHHHHHHHHHHhccccCcccccccCCCCceEEEEcCCCCcHHHHHHHHHHhc---CCeEEEEecchhhhh---
Q 016911 208 WESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSK--- 281 (380)
Q Consensus 208 ~~~l~Gl~~~k~~L~~~l~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~l---~~~~v~v~~s~l~~~--- 281 (380)
...++|++.+++.+...+...... .....+|...+||+||||||||++|+++|..+ +.+++.++++++...
T Consensus 564 ~~~v~GQ~~av~~v~~~i~~~~~g---l~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~~~~~i~~d~s~~~~~~~~ 640 (852)
T TIGR03346 564 HERVVGQDEAVEAVSDAIRRSRAG---LSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFDDEDAMVRIDMSEYMEKHSV 640 (852)
T ss_pred hcccCCChHHHHHHHHHHHHHhcc---CCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCCCCcEEEEechhhcccchH
Confidence 356899999999988877542110 01112455679999999999999999999987 568999998876432
Q ss_pred --hccchHH-----HHHHHHHHHHhcCCeEEEEcCcchhhhhccccchhhHHHHHHHHHHHHHhcCC--c------cCCC
Q 016911 282 --WRGDSEK-----LIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGL--T------QSDE 346 (380)
Q Consensus 282 --~~ge~e~-----~l~~lf~~A~~~~p~ILfIDEiD~l~~~~~~~~~~~~~~~~i~~~Ll~~ldgl--~------~~~~ 346 (380)
..|.... ....+....+....+||+|||++++.+. +.+.|+..++.- . ..-+
T Consensus 641 ~~l~g~~~g~~g~~~~g~l~~~v~~~p~~vlllDeieka~~~-------------v~~~Ll~~l~~g~l~d~~g~~vd~r 707 (852)
T TIGR03346 641 ARLIGAPPGYVGYEEGGQLTEAVRRKPYSVVLFDEVEKAHPD-------------VFNVLLQVLDDGRLTDGQGRTVDFR 707 (852)
T ss_pred HHhcCCCCCccCcccccHHHHHHHcCCCcEEEEeccccCCHH-------------HHHHHHHHHhcCceecCCCeEEecC
Confidence 1111100 0112333444555679999999987432 445566655422 1 1124
Q ss_pred cEEEEEEeCCCCC-------------------------chHHHHhcccceeEecCCC
Q 016911 347 LVFVLAATNLPWE-------------------------LDAAMLRRLEKRVSFSLIA 378 (380)
Q Consensus 347 ~VlVIatTN~~~~-------------------------Ld~aLlrRF~~~I~~plPd 378 (380)
+.+||+|||.... +.|.|+.|++.++.|..++
T Consensus 708 n~iiI~TSn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~pel~~Rid~IivF~PL~ 764 (852)
T TIGR03346 708 NTVIIMTSNLGSQFIQELAGGDDYEEMREAVMEVLRAHFRPEFLNRIDEIVVFHPLG 764 (852)
T ss_pred CcEEEEeCCcchHhHhhhcccccHHHHHHHHHHHHHhhcCHHHhcCcCeEEecCCcC
Confidence 5778999998422 3366777998888887765
No 148
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=99.06 E-value=1.5e-09 Score=106.58 Aligned_cols=140 Identities=16% Similarity=0.216 Sum_probs=94.1
Q ss_pred ccccccchHHHHHHHHHHHhccccCcccccccCCCCceEEEEcCCCCcHHHHHHHHHHhcCC--------eEEEEecchh
Q 016911 207 KWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKT--------TFFNISASSV 278 (380)
Q Consensus 207 ~~~~l~Gl~~~k~~L~~~l~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~l~~--------~~v~v~~s~l 278 (380)
.|++++|++.+++.+...+.. .+.+..+||+||+|+|||++|+++|+.+.. .++.+...
T Consensus 2 ~~~~i~g~~~~~~~l~~~~~~-----------~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~-- 68 (313)
T PRK05564 2 SFHTIIGHENIKNRIKNSIIK-----------NRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPI-- 68 (313)
T ss_pred ChhhccCcHHHHHHHHHHHHc-----------CCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccc--
Confidence 588999999999999887632 133467899999999999999999997622 22222221
Q ss_pred hhhhccchHHHHHHHHHHHH----hcCCeEEEEcCcchhhhhccccchhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEe
Q 016911 279 VSKWRGDSEKLIKVLFELAR----HHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAAT 354 (380)
Q Consensus 279 ~~~~~ge~e~~l~~lf~~A~----~~~p~ILfIDEiD~l~~~~~~~~~~~~~~~~i~~~Ll~~ldgl~~~~~~VlVIatT 354 (380)
.+.. -.-..++.+.+.+. .....|++||++|.+.. ...+.|+..++. .+..+++|.+|
T Consensus 69 ~~~~--i~v~~ir~~~~~~~~~p~~~~~kv~iI~~ad~m~~-------------~a~naLLK~LEe---pp~~t~~il~~ 130 (313)
T PRK05564 69 NKKS--IGVDDIRNIIEEVNKKPYEGDKKVIIIYNSEKMTE-------------QAQNAFLKTIEE---PPKGVFIILLC 130 (313)
T ss_pred cCCC--CCHHHHHHHHHHHhcCcccCCceEEEEechhhcCH-------------HHHHHHHHHhcC---CCCCeEEEEEe
Confidence 0111 11223444444332 23456999999988732 235668888753 44556677777
Q ss_pred CCCCCchHHHHhcccceeEecCCC
Q 016911 355 NLPWELDAAMLRRLEKRVSFSLIA 378 (380)
Q Consensus 355 N~~~~Ld~aLlrRF~~~I~~plPd 378 (380)
+.++.+.+++++|+. .++|+.|+
T Consensus 131 ~~~~~ll~TI~SRc~-~~~~~~~~ 153 (313)
T PRK05564 131 ENLEQILDTIKSRCQ-IYKLNRLS 153 (313)
T ss_pred CChHhCcHHHHhhce-eeeCCCcC
Confidence 888999999999985 67777665
No 149
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.05 E-value=1.2e-09 Score=118.17 Aligned_cols=151 Identities=23% Similarity=0.237 Sum_probs=97.1
Q ss_pred cccccchHHHHHHHHHHHhccccCcccccccCCCCceEEEEcCCCCcHHHHHHHHHHhc----------CCeEEEEecch
Q 016911 208 WESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC----------KTTFFNISASS 277 (380)
Q Consensus 208 ~~~l~Gl~~~k~~L~~~l~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~l----------~~~~v~v~~s~ 277 (380)
-+.|.|.++.++.|...+...+.. ..+...++|+|+||||||++++.+..++ ...+++++|..
T Consensus 754 PD~LPhREeEIeeLasfL~paIkg-------sgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~ 826 (1164)
T PTZ00112 754 PKYLPCREKEIKEVHGFLESGIKQ-------SGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMN 826 (1164)
T ss_pred CCcCCChHHHHHHHHHHHHHHHhc-------CCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCc
Confidence 368899999999998877544331 1233446799999999999999998766 25678999954
Q ss_pred hhhhh----------------cc-chHHHHHHHHHHHHh--cCCeEEEEcCcchhhhhccccchhhHHHHHHHHHHHHHh
Q 016911 278 VVSKW----------------RG-DSEKLIKVLFELARH--HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQM 338 (380)
Q Consensus 278 l~~~~----------------~g-e~e~~l~~lf~~A~~--~~p~ILfIDEiD~l~~~~~~~~~~~~~~~~i~~~Ll~~l 338 (380)
+...+ .+ .....+..+|..... ....||+|||||.|.... +.++-.|+.+.
T Consensus 827 Lstp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~----------QDVLYnLFR~~ 896 (1164)
T PTZ00112 827 VVHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKT----------QKVLFTLFDWP 896 (1164)
T ss_pred cCCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccH----------HHHHHHHHHHh
Confidence 32211 01 123455566655422 234699999999996431 12223333332
Q ss_pred cCCccCCCcEEEEEEeCCC---CCchHHHHhcccc-eeEecCCC
Q 016911 339 DGLTQSDELVFVLAATNLP---WELDAAMLRRLEK-RVSFSLIA 378 (380)
Q Consensus 339 dgl~~~~~~VlVIatTN~~---~~Ld~aLlrRF~~-~I~~plPd 378 (380)
......+.||+++|.. +.+++.+.+||.. .+.|+.++
T Consensus 897 ---~~s~SKLiLIGISNdlDLperLdPRLRSRLg~eeIvF~PYT 937 (1164)
T PTZ00112 897 ---TKINSKLVLIAISNTMDLPERLIPRCRSRLAFGRLVFSPYK 937 (1164)
T ss_pred ---hccCCeEEEEEecCchhcchhhhhhhhhccccccccCCCCC
Confidence 2234568899999864 4577888898864 36665554
No 150
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=99.05 E-value=7.1e-10 Score=110.62 Aligned_cols=151 Identities=19% Similarity=0.275 Sum_probs=92.9
Q ss_pred CCCCccccccchHHHHHHHHHHHhccccCcccccccCCCCceEEEEcCCCCcHHHHHHHHHHhcC-------CeEEEEec
Q 016911 203 SPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECK-------TTFFNISA 275 (380)
Q Consensus 203 ~p~~~~~~l~Gl~~~k~~L~~~l~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~l~-------~~~v~v~~ 275 (380)
.+..+|++|+|++++|..|......+ ...++||.|++|||||+++++++..+. .+|. .++
T Consensus 11 ~~~~pf~~ivGq~~~k~al~~~~~~p------------~~~~vli~G~~GtGKs~~ar~~~~~l~~~~~~~~~pf~-~~p 77 (350)
T CHL00081 11 RPVFPFTAIVGQEEMKLALILNVIDP------------KIGGVMIMGDRGTGKSTTIRALVDLLPEIEVVKDDPFN-SHP 77 (350)
T ss_pred CCCCCHHHHhChHHHHHHHHHhccCC------------CCCeEEEEcCCCCCHHHHHHHHHHHHhhcCccCCCCCC-CCC
Confidence 35668999999999999988665332 225899999999999999999988762 1221 000
Q ss_pred -------chhhhhh-------------------ccchHHHH------HHHHHHH---------HhcCCeEEEEcCcchhh
Q 016911 276 -------SSVVSKW-------------------RGDSEKLI------KVLFELA---------RHHAPSTIFLDEIDAII 314 (380)
Q Consensus 276 -------s~l~~~~-------------------~ge~e~~l------~~lf~~A---------~~~~p~ILfIDEiD~l~ 314 (380)
+...+.. .+.++..+ ...+... .....++||+||++.+.
T Consensus 78 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~ted~l~G~iD~~~al~~g~~~~~~GlL~~A~~GiL~lDEInrL~ 157 (350)
T CHL00081 78 SDPELMSDEVREAIQNGETIETEKIKIPMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLD 157 (350)
T ss_pred CChhhhchhhhhhhcccccccceeccccceecCCCCchhhccCcccHHHHhhcCcccccCCeeeecCCCEEEecChHhCC
Confidence 0000000 01122211 0011100 01224799999999885
Q ss_pred hhccccchhhHHHHHHHHHHHHHhcC---------Cc-cCCCcEEEEEEeCCCC-CchHHHHhcccceeEecCCCC
Q 016911 315 SQRGEARSEHEASRRLKTELLIQMDG---------LT-QSDELVFVLAATNLPW-ELDAAMLRRLEKRVSFSLIAL 379 (380)
Q Consensus 315 ~~~~~~~~~~~~~~~i~~~Ll~~ldg---------l~-~~~~~VlVIatTN~~~-~Ld~aLlrRF~~~I~~plPd~ 379 (380)
+. ++..|+..|+. .. ..+..+++|+|.|..+ .+.+++++||...+.+..|+.
T Consensus 158 ~~-------------~Q~~LLeam~e~~~~ier~G~s~~~p~rfiviaT~np~eg~l~~~LldRf~l~i~l~~~~~ 220 (350)
T CHL00081 158 DH-------------LVDILLDSAASGWNTVEREGISIRHPARFVLVGSGNPEEGELRPQLLDRFGMHAEIRTVKD 220 (350)
T ss_pred HH-------------HHHHHHHHHHhCCeEEeeCCeeeecCCCEEEEeccCcccCCCCHHHHHHhCceeecCCCCC
Confidence 43 23334444432 11 1234577888778665 599999999999998888763
No 151
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.03 E-value=8.9e-10 Score=110.61 Aligned_cols=135 Identities=25% Similarity=0.435 Sum_probs=90.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhcCCeEEEEecchhh-hhhccc-hHHHHHHHHHHHHh----cCCeEEEEcCcchhhhh
Q 016911 243 KGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVV-SKWRGD-SEKLIKVLFELARH----HAPSTIFLDEIDAIISQ 316 (380)
Q Consensus 243 ~~vLL~GppGtGKT~la~ala~~l~~~~v~v~~s~l~-~~~~ge-~e~~l~~lf~~A~~----~~p~ILfIDEiD~l~~~ 316 (380)
.++||.||+|+|||.||+.||..++.||...+|+.+. ..|+|+ .+..+..++..|.. ...+|+||||+|++...
T Consensus 227 SNvLllGPtGsGKTllaqTLAr~ldVPfaIcDcTtLTQAGYVGeDVEsvi~KLl~~A~~nVekAQqGIVflDEvDKi~~~ 306 (564)
T KOG0745|consen 227 SNVLLLGPTGSGKTLLAQTLARVLDVPFAICDCTTLTQAGYVGEDVESVIQKLLQEAEYNVEKAQQGIVFLDEVDKITKK 306 (564)
T ss_pred ccEEEECCCCCchhHHHHHHHHHhCCCeEEecccchhhcccccccHHHHHHHHHHHccCCHHHHhcCeEEEehhhhhccc
Confidence 6899999999999999999999999999999999885 457776 46667777665542 23579999999999744
Q ss_pred ccccchh-hHHHHHHHHHHHHHhcCCcc------------------CCCcEEEEEEeCCCCCchHHHHhcc-cceeEecC
Q 016911 317 RGEARSE-HEASRRLKTELLIQMDGLTQ------------------SDELVFVLAATNLPWELDAAMLRRL-EKRVSFSL 376 (380)
Q Consensus 317 ~~~~~~~-~~~~~~i~~~Ll~~ldgl~~------------------~~~~VlVIatTN~~~~Ld~aLlrRF-~~~I~~pl 376 (380)
...-... +-..+-+++.||..++|--. .+.+|++|+.. --..||..+.+|. +..+-|..
T Consensus 307 ~~~i~~~RDVsGEGVQQaLLKllEGtvVnVpeK~~~~~~rgd~vqiDTtnILFiasG-AF~~Ldk~I~rR~~d~slGFg~ 385 (564)
T KOG0745|consen 307 AESIHTSRDVSGEGVQQALLKLLEGTVVNVPEKGSRRKPRGDTVQIDTTNILFIASG-AFVGLDKIISRRLDDKSLGFGA 385 (564)
T ss_pred CccccccccccchhHHHHHHHHhcccEEcccCCCCCCCCCCCeEEEeccceEEEecc-cccchHHHHHHhhcchhcccCC
Confidence 3221111 11123456677777765210 11234444322 2235888888876 45566666
Q ss_pred CC
Q 016911 377 IA 378 (380)
Q Consensus 377 Pd 378 (380)
|+
T Consensus 386 ~s 387 (564)
T KOG0745|consen 386 PS 387 (564)
T ss_pred CC
Confidence 64
No 152
>PRK13531 regulatory ATPase RavA; Provisional
Probab=99.02 E-value=1.2e-09 Score=112.68 Aligned_cols=143 Identities=18% Similarity=0.212 Sum_probs=83.1
Q ss_pred ccccchHHHHHHHHHHHhccccCcccccccCCCCceEEEEcCCCCcHHHHHHHHHHhcCC--eEEEEecch-hhhhhccc
Q 016911 209 ESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKT--TFFNISASS-VVSKWRGD 285 (380)
Q Consensus 209 ~~l~Gl~~~k~~L~~~l~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~l~~--~~v~v~~s~-l~~~~~ge 285 (380)
..++|.+++++.+...+ ..+.++||+||||||||++|++++..++. +|....+.. ...+..|.
T Consensus 20 ~~i~gre~vI~lll~aa--------------lag~hVLL~GpPGTGKT~LAraLa~~~~~~~~F~~~~~~fttp~DLfG~ 85 (498)
T PRK13531 20 KGLYERSHAIRLCLLAA--------------LSGESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGP 85 (498)
T ss_pred hhccCcHHHHHHHHHHH--------------ccCCCEEEECCCChhHHHHHHHHHHHhcccCcceeeeeeecCcHHhcCc
Confidence 45778888887777554 34579999999999999999999997743 344333321 12222332
Q ss_pred h-HHHH--HHHHHHHH-h-c-CCeEEEEcCcchhhhhccccchhhHHHHHHHHHHHHHhcCCc-------cCCCcEEEEE
Q 016911 286 S-EKLI--KVLFELAR-H-H-APSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT-------QSDELVFVLA 352 (380)
Q Consensus 286 ~-e~~l--~~lf~~A~-~-~-~p~ILfIDEiD~l~~~~~~~~~~~~~~~~i~~~Ll~~ldgl~-------~~~~~VlVIa 352 (380)
. -... ...|.... . . ...+||+|||..+.+. +.+.|+..|..-. ..-...++++
T Consensus 86 l~i~~~~~~g~f~r~~~G~L~~A~lLfLDEI~rasp~-------------~QsaLLeam~Er~~t~g~~~~~lp~rfiv~ 152 (498)
T PRK13531 86 LSIQALKDEGRYQRLTSGYLPEAEIVFLDEIWKAGPA-------------ILNTLLTAINERRFRNGAHEEKIPMRLLVT 152 (498)
T ss_pred HHHhhhhhcCchhhhcCCccccccEEeecccccCCHH-------------HHHHHHHHHHhCeEecCCeEEeCCCcEEEE
Confidence 1 0000 11121111 1 0 2249999999866432 4455666663211 1112234455
Q ss_pred EeCCCCC---chHHHHhcccceeEecCCC
Q 016911 353 ATNLPWE---LDAAMLRRLEKRVSFSLIA 378 (380)
Q Consensus 353 tTN~~~~---Ld~aLlrRF~~~I~~plPd 378 (380)
|||...+ ..+++.+||-..+.+|.|+
T Consensus 153 ATN~LPE~g~~leAL~DRFliri~vp~l~ 181 (498)
T PRK13531 153 ASNELPEADSSLEALYDRMLIRLWLDKVQ 181 (498)
T ss_pred ECCCCcccCCchHHhHhhEEEEEECCCCC
Confidence 6674332 3359999998788888875
No 153
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.01 E-value=1.2e-09 Score=111.85 Aligned_cols=134 Identities=22% Similarity=0.323 Sum_probs=100.8
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHhcCCeEEEEe-cchhhhhhccchHHHHHHHHHHHHhcCCeEEEEcCcchhhhhccc
Q 016911 241 PWKGILLFGPPGTGKTMLAKAVATECKTTFFNIS-ASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGE 319 (380)
Q Consensus 241 ~~~~vLL~GppGtGKT~la~ala~~l~~~~v~v~-~s~l~~~~~ge~e~~l~~lf~~A~~~~p~ILfIDEiD~l~~~~~~ 319 (380)
+-..+||.||||+|||+||..+|...+.||+.+- +.++.+......-..++.+|+.|+...-+||++|+++.+..-
T Consensus 537 ~lvSvLl~Gp~~sGKTaLAA~iA~~S~FPFvKiiSpe~miG~sEsaKc~~i~k~F~DAYkS~lsiivvDdiErLiD~--- 613 (744)
T KOG0741|consen 537 PLVSVLLEGPPGSGKTALAAKIALSSDFPFVKIISPEDMIGLSESAKCAHIKKIFEDAYKSPLSIIVVDDIERLLDY--- 613 (744)
T ss_pred cceEEEEecCCCCChHHHHHHHHhhcCCCeEEEeChHHccCccHHHHHHHHHHHHHHhhcCcceEEEEcchhhhhcc---
Confidence 3467999999999999999999999999999754 444443322223446788999999998899999999998642
Q ss_pred cchhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCCCCCchH-HHHhcccceeEecCC
Q 016911 320 ARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDA-AMLRRLEKRVSFSLI 377 (380)
Q Consensus 320 ~~~~~~~~~~i~~~Ll~~ldgl~~~~~~VlVIatTN~~~~Ld~-aLlrRF~~~I~~plP 377 (380)
.......+..+++.|+..+.......++.+|++||.+.+-|.. .+++.|+..+.+|-.
T Consensus 614 vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vpnl 672 (744)
T KOG0741|consen 614 VPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVPNL 672 (744)
T ss_pred cccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecCcc
Confidence 2334456677888888888777777778889999887554332 456688888877754
No 154
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=99.01 E-value=9.2e-10 Score=118.05 Aligned_cols=144 Identities=21% Similarity=0.264 Sum_probs=93.9
Q ss_pred ccccccchHHHHHHHHHHHhccccCcccccccCCCCceEEEEcCCCCcHHHHHHHHHHhc--------------------
Q 016911 207 KWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC-------------------- 266 (380)
Q Consensus 207 ~~~~l~Gl~~~k~~L~~~l~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~l-------------------- 266 (380)
+|.+|+|++.++..+.-....+ ...++||.|+||||||++|++++..+
T Consensus 2 pf~~ivGq~~~~~al~~~av~~------------~~g~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p~~~~~ 69 (633)
T TIGR02442 2 PFTAIVGQEDLKLALLLNAVDP------------RIGGVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDPDDPEE 69 (633)
T ss_pred CcchhcChHHHHHHHHHHhhCC------------CCCeEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCCCCccc
Confidence 5789999999998877544221 12579999999999999999999988
Q ss_pred ---------------CCeEEEEecchhhhhhccch--HHHHH--------HHHHHHHhcCCeEEEEcCcchhhhhccccc
Q 016911 267 ---------------KTTFFNISASSVVSKWRGDS--EKLIK--------VLFELARHHAPSTIFLDEIDAIISQRGEAR 321 (380)
Q Consensus 267 ---------------~~~~v~v~~s~l~~~~~ge~--e~~l~--------~lf~~A~~~~p~ILfIDEiD~l~~~~~~~~ 321 (380)
..+|+.+.++......+|.. ++.++ .++.. ...+||||||++.+...
T Consensus 70 ~~~~~~~~~~~~~~~~~pfv~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~L~~---A~~GiL~lDEi~~l~~~----- 141 (633)
T TIGR02442 70 WCEECRRKYRPSEQRPVPFVNLPLGATEDRVVGSLDIERALREGEKAFQPGLLAE---AHRGILYIDEVNLLDDH----- 141 (633)
T ss_pred cChhhhhcccccccCCCCeeeCCCCCcHHHcCCcccHHHHhhcCCeeecCcceee---cCCCeEEeChhhhCCHH-----
Confidence 24666666554333333321 11110 11111 12469999999988542
Q ss_pred hhhHHHHHHHHHHHHHhcCC----------ccCCCcEEEEEEeCCCC-CchHHHHhcccceeEecCCC
Q 016911 322 SEHEASRRLKTELLIQMDGL----------TQSDELVFVLAATNLPW-ELDAAMLRRLEKRVSFSLIA 378 (380)
Q Consensus 322 ~~~~~~~~i~~~Ll~~ldgl----------~~~~~~VlVIatTN~~~-~Ld~aLlrRF~~~I~~plPd 378 (380)
+++.|+..|+.- ......+.+|+|+|..+ .+.++|++||...+.++.|.
T Consensus 142 --------~q~~Ll~~le~g~~~v~r~g~~~~~~~~~~lIat~np~eg~l~~~L~dR~~l~i~v~~~~ 201 (633)
T TIGR02442 142 --------LVDVLLDAAAMGVNRVEREGLSVSHPARFVLIGTMNPEEGDLRPQLLDRFGLCVDVAAPR 201 (633)
T ss_pred --------HHHHHHHHHhcCCEEEEECCceeeecCCeEEEEecCCCCCCCCHHHHhhcceEEEccCCC
Confidence 344566555421 11224578899988643 58899999998777776553
No 155
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=99.00 E-value=5.4e-10 Score=115.99 Aligned_cols=145 Identities=19% Similarity=0.247 Sum_probs=101.7
Q ss_pred hhccCCCCccccccchHHHHHHHHHHHhccccCcccccccCCCCceEEEEcCCCCcHHHHHHHHHHhcCCeE--E-----
Q 016911 199 IIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTF--F----- 271 (380)
Q Consensus 199 ~~~~~p~~~~~~l~Gl~~~k~~L~~~l~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~l~~~~--v----- 271 (380)
.+...+...|++++|++.+.+.|...+..- +-...+||.||.|+||||+||.+|..++..- .
T Consensus 6 L~rKyRP~~F~evvGQe~v~~~L~nal~~~-----------ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~ 74 (515)
T COG2812 6 LARKYRPKTFDDVVGQEHVVKTLSNALENG-----------RIAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCG 74 (515)
T ss_pred HHHHhCcccHHHhcccHHHHHHHHHHHHhC-----------cchhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcch
Confidence 345567788999999999999999887542 2336799999999999999999999986431 0
Q ss_pred EE-ecchhhhh-hc---------cchHHHHHHHHHHHH----hcCCeEEEEcCcchhhhhccccchhhHHHHHHHHHHHH
Q 016911 272 NI-SASSVVSK-WR---------GDSEKLIKVLFELAR----HHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLI 336 (380)
Q Consensus 272 ~v-~~s~l~~~-~~---------ge~e~~l~~lf~~A~----~~~p~ILfIDEiD~l~~~~~~~~~~~~~~~~i~~~Ll~ 336 (380)
.+ .|.++... ++ ..+-..++.+.+.+. ...+.|.+|||++.+. ....+.||.
T Consensus 75 ~C~~Ck~I~~g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS-------------~~afNALLK 141 (515)
T COG2812 75 KCISCKEINEGSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLS-------------KQAFNALLK 141 (515)
T ss_pred hhhhhHhhhcCCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhh-------------HHHHHHHhc
Confidence 00 01111110 00 112334444444443 3345699999999883 446677887
Q ss_pred HhcCCccCCCcEEEEEEeCCCCCchHHHHhcccc
Q 016911 337 QMDGLTQSDELVFVLAATNLPWELDAAMLRRLEK 370 (380)
Q Consensus 337 ~ldgl~~~~~~VlVIatTN~~~~Ld~aLlrRF~~ 370 (380)
.+ ...+..|.+|.+|..++.+++.+++|+.+
T Consensus 142 TL---EEPP~hV~FIlATTe~~Kip~TIlSRcq~ 172 (515)
T COG2812 142 TL---EEPPSHVKFILATTEPQKIPNTILSRCQR 172 (515)
T ss_pred cc---ccCccCeEEEEecCCcCcCchhhhhcccc
Confidence 77 56777899999999999999999998754
No 156
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.99 E-value=3.5e-09 Score=106.48 Aligned_cols=146 Identities=18% Similarity=0.192 Sum_probs=94.2
Q ss_pred CCccccccchHHHHHHHHHHHhccccCcccccccCCCCceEEEEcCCCCcHHHHHHHHHHhcCCe---------------
Q 016911 205 DVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT--------------- 269 (380)
Q Consensus 205 ~~~~~~l~Gl~~~k~~L~~~l~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~l~~~--------------- 269 (380)
...+++|+|++.+++.+.+.+... +.+..+||+||+|+||+++|.++|+.+-..
T Consensus 15 P~~~~~iiGq~~~~~~L~~~~~~~-----------rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l 83 (365)
T PRK07471 15 PRETTALFGHAAAEAALLDAYRSG-----------RLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSL 83 (365)
T ss_pred CCchhhccChHHHHHHHHHHHHcC-----------CCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccc
Confidence 346899999999999999876431 334579999999999999999999987211
Q ss_pred -------------------EEEEecc--hhhhhhcc-chHHHHHHHHHHHH----hcCCeEEEEcCcchhhhhccccchh
Q 016911 270 -------------------FFNISAS--SVVSKWRG-DSEKLIKVLFELAR----HHAPSTIFLDEIDAIISQRGEARSE 323 (380)
Q Consensus 270 -------------------~v~v~~s--~l~~~~~g-e~e~~l~~lf~~A~----~~~p~ILfIDEiD~l~~~~~~~~~~ 323 (380)
++.+... +-.+.... -.-..++.+...+. ...+.|++|||+|.+-.
T Consensus 84 ~~~~~c~~c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~~-------- 155 (365)
T PRK07471 84 AIDPDHPVARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEMNA-------- 155 (365)
T ss_pred cCCCCChHHHHHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhcCH--------
Confidence 0111100 00000000 01122344333322 23567999999998732
Q ss_pred hHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCCCCCchHHHHhcccceeEecCCC
Q 016911 324 HEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRVSFSLIA 378 (380)
Q Consensus 324 ~~~~~~i~~~Ll~~ldgl~~~~~~VlVIatTN~~~~Ld~aLlrRF~~~I~~plPd 378 (380)
...+.|++.++. ....+++|.+|+.++.+.+.+++|+. .+.|+.|+
T Consensus 156 -----~aanaLLK~LEe---pp~~~~~IL~t~~~~~llpti~SRc~-~i~l~~l~ 201 (365)
T PRK07471 156 -----NAANALLKVLEE---PPARSLFLLVSHAPARLLPTIRSRCR-KLRLRPLA 201 (365)
T ss_pred -----HHHHHHHHHHhc---CCCCeEEEEEECCchhchHHhhccce-EEECCCCC
Confidence 245567777743 34456678899999999999999985 56777665
No 157
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=98.99 E-value=9.6e-10 Score=113.14 Aligned_cols=124 Identities=15% Similarity=0.320 Sum_probs=76.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhc-----CCeEEEEecchhhhhhccchH-HHHHHHHHHHHhcCCeEEEEcCcchhhhh
Q 016911 243 KGILLFGPPGTGKTMLAKAVATEC-----KTTFFNISASSVVSKWRGDSE-KLIKVLFELARHHAPSTIFLDEIDAIISQ 316 (380)
Q Consensus 243 ~~vLL~GppGtGKT~la~ala~~l-----~~~~v~v~~s~l~~~~~ge~e-~~l~~lf~~A~~~~p~ILfIDEiD~l~~~ 316 (380)
..++||||||+|||+|++++++++ +..++++++.++...+..... ..... |.......+++|+|||++.+.+.
T Consensus 131 n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~f~~~~~~~~~~~~~~~-f~~~~~~~~dvLlIDDi~~l~~~ 209 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDLVDSMKEGKLNE-FREKYRKKVDVLLIDDVQFLIGK 209 (440)
T ss_pred CeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHhcccHHH-HHHHHHhcCCEEEEechhhhcCc
Confidence 469999999999999999999986 457888898887665432211 11112 22222235789999999988543
Q ss_pred ccccchhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCCCCC---chHHHHhcccc--eeEecCCCC
Q 016911 317 RGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWE---LDAAMLRRLEK--RVSFSLIAL 379 (380)
Q Consensus 317 ~~~~~~~~~~~~~i~~~Ll~~ldgl~~~~~~VlVIatTN~~~~---Ld~aLlrRF~~--~I~~plPd~ 379 (380)
.. ....++..++.+..... .+||++.+.|.. +.+.+.+||.. .+.+..||.
T Consensus 210 ~~-----------~q~elf~~~n~l~~~~k-~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~ 265 (440)
T PRK14088 210 TG-----------VQTELFHTFNELHDSGK-QIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDE 265 (440)
T ss_pred HH-----------HHHHHHHHHHHHHHcCC-eEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCH
Confidence 11 11223333333332332 344444455554 56778889953 556777774
No 158
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=98.97 E-value=1.6e-09 Score=112.97 Aligned_cols=142 Identities=27% Similarity=0.338 Sum_probs=88.0
Q ss_pred ccccccchHHHHHHHHHHHhccccCcccccccCCCCceEEEEcCCCCcHHHHHHHHHHhcC-------------------
Q 016911 207 KWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECK------------------- 267 (380)
Q Consensus 207 ~~~~l~Gl~~~k~~L~~~l~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~l~------------------- 267 (380)
.|+++.|++.+++.+.-.+ ..+.+++|.||||||||++++.++..+.
T Consensus 190 d~~dv~Gq~~~~~al~~aa--------------~~g~~vlliG~pGsGKTtlar~l~~llp~~~~~~~le~~~i~s~~g~ 255 (499)
T TIGR00368 190 DLKDIKGQQHAKRALEIAA--------------AGGHNLLLFGPPGSGKTMLASRLQGILPPLTNEEAIETARIWSLVGK 255 (499)
T ss_pred CHHHhcCcHHHHhhhhhhc--------------cCCCEEEEEecCCCCHHHHHHHHhcccCCCCCcEEEeccccccchhh
Confidence 6889999998877666433 3557899999999999999999997541
Q ss_pred ---------CeEEEEecchhhhhhccchHHHHHHHHHHHHhcCCeEEEEcCcchhhhhccccchhhHHHHHHHHHHHHHh
Q 016911 268 ---------TTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQM 338 (380)
Q Consensus 268 ---------~~~v~v~~s~l~~~~~ge~e~~l~~lf~~A~~~~p~ILfIDEiD~l~~~~~~~~~~~~~~~~i~~~Ll~~l 338 (380)
.||...+++......+|.........+..|. +++|||||++.+... ++..|+..|
T Consensus 256 ~~~~~~~~~~Pf~~p~~s~s~~~~~ggg~~~~pG~i~lA~---~GvLfLDEi~e~~~~-------------~~~~L~~~L 319 (499)
T TIGR00368 256 LIDRKQIKQRPFRSPHHSASKPALVGGGPIPLPGEISLAH---NGVLFLDELPEFKRS-------------VLDALREPI 319 (499)
T ss_pred hccccccccCCccccccccchhhhhCCccccchhhhhccC---CCeEecCChhhCCHH-------------HHHHHHHHH
Confidence 1222222222211122221111111233333 579999999987432 333444444
Q ss_pred cCC----------ccCCCcEEEEEEeCCC------C-----------------CchHHHHhcccceeEecCCC
Q 016911 339 DGL----------TQSDELVFVLAATNLP------W-----------------ELDAAMLRRLEKRVSFSLIA 378 (380)
Q Consensus 339 dgl----------~~~~~~VlVIatTN~~------~-----------------~Ld~aLlrRF~~~I~~plPd 378 (380)
+.- ......+.+|+++|.- . .+..+|++||+..+.++.++
T Consensus 320 E~~~v~i~r~g~~~~~pa~frlIaa~Npcpcg~~~~~~~~c~c~~~~~~~y~~~is~pllDR~dl~~~~~~~~ 392 (499)
T TIGR00368 320 EDGSISISRASAKIFYPARFQLVAAMNPCPCGHYGGKNTHCRCSPQQISRYWNKLSGPFLDRIDLSVEVPLLP 392 (499)
T ss_pred HcCcEEEEecCcceeccCCeEEEEecCCcccCcCCCCcccccCCHHHHHHHhhhccHhHHhhCCEEEEEcCCC
Confidence 321 1123457889999853 1 38889999999988887664
No 159
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.97 E-value=5.1e-09 Score=111.80 Aligned_cols=142 Identities=23% Similarity=0.284 Sum_probs=96.4
Q ss_pred CCCCccccccchHHHHHHHHHHHhccccCcccccccCCCCceEEEEcCCCCcHHHHHHHHHHhcCC--------------
Q 016911 203 SPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKT-------------- 268 (380)
Q Consensus 203 ~p~~~~~~l~Gl~~~k~~L~~~l~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~l~~-------------- 268 (380)
.+...|++++|++.+++.|...+..- ..+..+||+||+|+|||++|+.+|..++.
T Consensus 11 yRP~~f~~viGq~~~~~~L~~~i~~~-----------~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~ 79 (614)
T PRK14971 11 YRPSTFESVVGQEALTTTLKNAIATN-----------KLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECE 79 (614)
T ss_pred HCCCCHHHhcCcHHHHHHHHHHHHcC-----------CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcch
Confidence 35578999999999999998876431 23456899999999999999999998752
Q ss_pred -----------eEEEEecchhhhhhccchHHHHHHHHHHHHhc----CCeEEEEcCcchhhhhccccchhhHHHHHHHHH
Q 016911 269 -----------TFFNISASSVVSKWRGDSEKLIKVLFELARHH----APSTIFLDEIDAIISQRGEARSEHEASRRLKTE 333 (380)
Q Consensus 269 -----------~~v~v~~s~l~~~~~ge~e~~l~~lf~~A~~~----~p~ILfIDEiD~l~~~~~~~~~~~~~~~~i~~~ 333 (380)
.++.+++.+. .....++.+...+... ...|++|||+|.+.. ...+.
T Consensus 80 sC~~~~~~~~~n~~~ld~~~~------~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls~-------------~a~na 140 (614)
T PRK14971 80 SCVAFNEQRSYNIHELDAASN------NSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLSQ-------------AAFNA 140 (614)
T ss_pred HHHHHhcCCCCceEEeccccc------CCHHHHHHHHHHHhhCcccCCcEEEEEECcccCCH-------------HHHHH
Confidence 2233332210 1123344554444322 245999999998843 23456
Q ss_pred HHHHhcCCccCCCcEEEEEEeCCCCCchHHHHhcccceeEecCCC
Q 016911 334 LLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRVSFSLIA 378 (380)
Q Consensus 334 Ll~~ldgl~~~~~~VlVIatTN~~~~Ld~aLlrRF~~~I~~plPd 378 (380)
|+..++. ....+++|.+|+.+..+-+++++|+. .++|..++
T Consensus 141 LLK~LEe---pp~~tifIL~tt~~~kIl~tI~SRc~-iv~f~~ls 181 (614)
T PRK14971 141 FLKTLEE---PPSYAIFILATTEKHKILPTILSRCQ-IFDFNRIQ 181 (614)
T ss_pred HHHHHhC---CCCCeEEEEEeCCchhchHHHHhhhh-eeecCCCC
Confidence 7777753 33445677777777889999999985 47776554
No 160
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.97 E-value=7e-09 Score=103.83 Aligned_cols=146 Identities=14% Similarity=0.153 Sum_probs=93.6
Q ss_pred CCccccccchHHHHHHHHHHHhccccCcccccccCCCCceEEEEcCCCCcHHHHHHHHHHhcCC-------eEEEE----
Q 016911 205 DVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKT-------TFFNI---- 273 (380)
Q Consensus 205 ~~~~~~l~Gl~~~k~~L~~~l~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~l~~-------~~v~v---- 273 (380)
...++.++|++.+++.+...+..- +.+..+||+||+|+|||++|+.+|+.+.. +....
T Consensus 19 P~~~~~l~Gh~~a~~~L~~a~~~g-----------rl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~~~~ 87 (351)
T PRK09112 19 PSENTRLFGHEEAEAFLAQAYREG-----------KLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADPDP 87 (351)
T ss_pred CCchhhccCcHHHHHHHHHHHHcC-----------CCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCCCCC
Confidence 346899999999999999876431 23357999999999999999999998843 11100
Q ss_pred ecc---hh--------h---hh--hc------cchHHHHHHHHHHHH----hcCCeEEEEcCcchhhhhccccchhhHHH
Q 016911 274 SAS---SV--------V---SK--WR------GDSEKLIKVLFELAR----HHAPSTIFLDEIDAIISQRGEARSEHEAS 327 (380)
Q Consensus 274 ~~s---~l--------~---~~--~~------ge~e~~l~~lf~~A~----~~~p~ILfIDEiD~l~~~~~~~~~~~~~~ 327 (380)
.|. .+ . .. .. .-.-..++.+..... .....|++|||+|.+-.
T Consensus 88 ~c~~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l~~------------ 155 (351)
T PRK09112 88 ASPVWRQIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDMNR------------ 155 (351)
T ss_pred CCHHHHHHHcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhcCH------------
Confidence 110 00 0 00 00 001122333332222 23456999999998832
Q ss_pred HHHHHHHHHHhcCCccCCCcEEEEEEeCCCCCchHHHHhcccceeEecCCC
Q 016911 328 RRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRVSFSLIA 378 (380)
Q Consensus 328 ~~i~~~Ll~~ldgl~~~~~~VlVIatTN~~~~Ld~aLlrRF~~~I~~plPd 378 (380)
...+.|+..++. .....++|..|+.++.+.+++++|+ ..+.|+.|+
T Consensus 156 -~aanaLLk~LEE---pp~~~~fiLit~~~~~llptIrSRc-~~i~l~pl~ 201 (351)
T PRK09112 156 -NAANAILKTLEE---PPARALFILISHSSGRLLPTIRSRC-QPISLKPLD 201 (351)
T ss_pred -HHHHHHHHHHhc---CCCCceEEEEECChhhccHHHHhhc-cEEEecCCC
Confidence 234567777754 3334566667788888899999999 578887775
No 161
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=98.97 E-value=1.2e-09 Score=115.40 Aligned_cols=123 Identities=15% Similarity=0.262 Sum_probs=78.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhc-----CCeEEEEecchhhhhhccchHHHHHHHHHHHHhcCCeEEEEcCcchhhhhc
Q 016911 243 KGILLFGPPGTGKTMLAKAVATEC-----KTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQR 317 (380)
Q Consensus 243 ~~vLL~GppGtGKT~la~ala~~l-----~~~~v~v~~s~l~~~~~ge~e~~l~~lf~~A~~~~p~ILfIDEiD~l~~~~ 317 (380)
..++|||++|+|||+|++++++.+ +..++++++.++...+...........|... ....++|+|||++.+..+.
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~el~~al~~~~~~~f~~~-y~~~DLLlIDDIq~l~gke 393 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTNEFINSIRDGKGDSFRRR-YREMDILLVDDIQFLEDKE 393 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHHHHhccHHHHHHH-hhcCCEEEEehhccccCCH
Confidence 459999999999999999999976 4678899998887666543322222223322 2236899999999885432
Q ss_pred cccchhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCCC-C---CchHHHHhccccee--EecCCCC
Q 016911 318 GEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLP-W---ELDAAMLRRLEKRV--SFSLIAL 379 (380)
Q Consensus 318 ~~~~~~~~~~~~i~~~Ll~~ldgl~~~~~~VlVIatTN~~-~---~Ld~aLlrRF~~~I--~~plPd~ 379 (380)
. ....|+..++.+....+. ||.|+|.+ . .+++.|.+||...+ .+..||.
T Consensus 394 ~-----------tqeeLF~l~N~l~e~gk~--IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~ 448 (617)
T PRK14086 394 S-----------TQEEFFHTFNTLHNANKQ--IVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPEL 448 (617)
T ss_pred H-----------HHHHHHHHHHHHHhcCCC--EEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCH
Confidence 1 112233333333333332 34466664 2 47889999996665 5555653
No 162
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=98.96 E-value=1.7e-10 Score=99.10 Aligned_cols=110 Identities=31% Similarity=0.343 Sum_probs=58.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcCCeEEEEecc-hhh-hhhccc----hHHHHHHHHHHHHh-cCCeEEEEcCcchhhhh
Q 016911 244 GILLFGPPGTGKTMLAKAVATECKTTFFNISAS-SVV-SKWRGD----SEKLIKVLFELARH-HAPSTIFLDEIDAIISQ 316 (380)
Q Consensus 244 ~vLL~GppGtGKT~la~ala~~l~~~~v~v~~s-~l~-~~~~ge----~e~~l~~lf~~A~~-~~p~ILfIDEiD~l~~~ 316 (380)
|+||+|+||+|||++++++|..++..|..+.++ ++. ++..|. ... ..|...+. .-..|+++|||....++
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~~~~f~RIq~tpdllPsDi~G~~v~~~~~---~~f~~~~GPif~~ill~DEiNrappk 77 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSLGLSFKRIQFTPDLLPSDILGFPVYDQET---GEFEFRPGPIFTNILLADEINRAPPK 77 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHTT--EEEEE--TT--HHHHHEEEEEETTT---TEEEEEE-TT-SSEEEEETGGGS-HH
T ss_pred CEeeECCCccHHHHHHHHHHHHcCCceeEEEecCCCCcccceeeeeeccCC---CeeEeecChhhhceeeecccccCCHH
Confidence 689999999999999999999999999988774 232 222221 000 00000000 00249999999887554
Q ss_pred ccccchhhHHHHHHHHHHHHHhcCC--------ccCCCcEEEEEEeCCCC-----CchHHHHhccc
Q 016911 317 RGEARSEHEASRRLKTELLIQMDGL--------TQSDELVFVLAATNLPW-----ELDAAMLRRLE 369 (380)
Q Consensus 317 ~~~~~~~~~~~~~i~~~Ll~~ldgl--------~~~~~~VlVIatTN~~~-----~Ld~aLlrRF~ 369 (380)
+++.++..|..- ..-....+||||.|..+ .|++++++||-
T Consensus 78 -------------tQsAlLeam~Er~Vt~~g~~~~lp~pf~ViATqNp~e~~Gty~Lpea~~DRF~ 130 (131)
T PF07726_consen 78 -------------TQSALLEAMEERQVTIDGQTYPLPDPFFVIATQNPVEQEGTYPLPEAQLDRFM 130 (131)
T ss_dssp -------------HHHHHHHHHHHSEEEETTEEEE--SS-EEEEEE-TT--S------HHHHTTSS
T ss_pred -------------HHHHHHHHHHcCeEEeCCEEEECCCcEEEEEecCccccCceecCCHHHhcccc
Confidence 344455555322 12235588999999876 49999999993
No 163
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=98.96 E-value=1.7e-09 Score=111.34 Aligned_cols=123 Identities=15% Similarity=0.316 Sum_probs=74.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhc---CCeEEEEecchhhhhhccchHHHHHHHHHHHHhcCCeEEEEcCcchhhhhcc
Q 016911 242 WKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRG 318 (380)
Q Consensus 242 ~~~vLL~GppGtGKT~la~ala~~l---~~~~v~v~~s~l~~~~~ge~e~~l~~lf~~A~~~~p~ILfIDEiD~l~~~~~ 318 (380)
...++|+||||+|||+|++++++++ +..++++++.++...+...........|.... ...++|+|||++.+.+...
T Consensus 141 ~npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~~f~~~~~~~l~~~~~~~f~~~~-~~~dvLiIDDiq~l~~k~~ 219 (445)
T PRK12422 141 FNPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSELFTEHLVSAIRSGEMQRFRQFY-RNVDALFIEDIEVFSGKGA 219 (445)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHHHHHHHHHHHHhcchHHHHHHHc-ccCCEEEEcchhhhcCChh
Confidence 3679999999999999999999976 67888888877655443222111111233322 2467999999998754211
Q ss_pred ccchhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCC-CC---CchHHHHhcccc--eeEecCCC
Q 016911 319 EARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNL-PW---ELDAAMLRRLEK--RVSFSLIA 378 (380)
Q Consensus 319 ~~~~~~~~~~~i~~~Ll~~ldgl~~~~~~VlVIatTN~-~~---~Ld~aLlrRF~~--~I~~plPd 378 (380)
....++..++.+.... .. +|.||+. |. .+++.+.+||.. .+.++.|+
T Consensus 220 -----------~qeelf~l~N~l~~~~-k~-IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd 272 (445)
T PRK12422 220 -----------TQEEFFHTFNSLHTEG-KL-IVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLT 272 (445)
T ss_pred -----------hHHHHHHHHHHHHHCC-Cc-EEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCC
Confidence 1122333322222222 23 4455554 43 477899999974 55555565
No 164
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.96 E-value=4e-09 Score=95.80 Aligned_cols=116 Identities=16% Similarity=0.266 Sum_probs=76.3
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHhcCCe------------------------EEEEecchhhhhhccchHHHHHHHHHH
Q 016911 241 PWKGILLFGPPGTGKTMLAKAVATECKTT------------------------FFNISASSVVSKWRGDSEKLIKVLFEL 296 (380)
Q Consensus 241 ~~~~vLL~GppGtGKT~la~ala~~l~~~------------------------~v~v~~s~l~~~~~ge~e~~l~~lf~~ 296 (380)
.+..+||+||+|+|||++|+.++..+... +..+.... . ......++.+...
T Consensus 13 ~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~---~--~~~~~~i~~i~~~ 87 (188)
T TIGR00678 13 LAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEG---Q--SIKVDQVRELVEF 87 (188)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEecccc---C--cCCHHHHHHHHHH
Confidence 34679999999999999999999987431 22222111 0 0112344444444
Q ss_pred HHh----cCCeEEEEcCcchhhhhccccchhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCCCCCchHHHHhccccee
Q 016911 297 ARH----HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRV 372 (380)
Q Consensus 297 A~~----~~p~ILfIDEiD~l~~~~~~~~~~~~~~~~i~~~Ll~~ldgl~~~~~~VlVIatTN~~~~Ld~aLlrRF~~~I 372 (380)
+.. ....|++|||+|.+... ..+.|+..++. .+...++|.+|+.+..+.+++++|+. .+
T Consensus 88 ~~~~~~~~~~kviiide~~~l~~~-------------~~~~Ll~~le~---~~~~~~~il~~~~~~~l~~~i~sr~~-~~ 150 (188)
T TIGR00678 88 LSRTPQESGRRVVIIEDAERMNEA-------------AANALLKTLEE---PPPNTLFILITPSPEKLLPTIRSRCQ-VL 150 (188)
T ss_pred HccCcccCCeEEEEEechhhhCHH-------------HHHHHHHHhcC---CCCCeEEEEEECChHhChHHHHhhcE-Ee
Confidence 443 33569999999988432 24457777754 33345677778888889999999984 67
Q ss_pred EecCCC
Q 016911 373 SFSLIA 378 (380)
Q Consensus 373 ~~plPd 378 (380)
+|+.|+
T Consensus 151 ~~~~~~ 156 (188)
T TIGR00678 151 PFPPLS 156 (188)
T ss_pred eCCCCC
Confidence 887775
No 165
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=98.95 E-value=1.4e-09 Score=108.00 Aligned_cols=142 Identities=24% Similarity=0.254 Sum_probs=87.1
Q ss_pred ccchHHHHHHHHHHHhccccCcccccccCCCCceEEEEcCCCCcHHHHHHHHHHhc---CCeEEEEecchhhhhhc----
Q 016911 211 IKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKWR---- 283 (380)
Q Consensus 211 l~Gl~~~k~~L~~~l~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~l---~~~~v~v~~s~l~~~~~---- 283 (380)
++|.+...+.+.+.+... ......|||+|++||||+++|+++.... +.+|+.++|..+.....
T Consensus 1 liG~S~~m~~~~~~~~~~----------a~~~~pVLI~GE~GtGK~~lAr~iH~~s~r~~~pfv~vnc~~~~~~~l~~~l 70 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRL----------APLDRPVLIIGERGTGKELIAARLHYLSKRWQGPLVKLNCAALSENLLDSEL 70 (329)
T ss_pred CCcCCHHHHHHHHHHHHH----------hCCCCCEEEECCCCChHHHHHHHHHHhcCccCCCeEEEeCCCCChHHHHHHH
Confidence 356666666666554332 2345789999999999999999998766 47999999987643211
Q ss_pred -cch-------HHHHHHHHHHHHhcCCeEEEEcCcchhhhhccccchhhHHHHHHHHHHHHHhcCC--------ccCCCc
Q 016911 284 -GDS-------EKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGL--------TQSDEL 347 (380)
Q Consensus 284 -ge~-------e~~l~~lf~~A~~~~p~ILfIDEiD~l~~~~~~~~~~~~~~~~i~~~Ll~~ldgl--------~~~~~~ 347 (380)
|.. .......+..|. +++||||||+.+... ++..|+..++.- .....+
T Consensus 71 fG~~~g~~~ga~~~~~G~~~~a~---gGtL~Ldei~~L~~~-------------~Q~~Ll~~l~~~~~~~~g~~~~~~~~ 134 (329)
T TIGR02974 71 FGHEAGAFTGAQKRHQGRFERAD---GGTLFLDELATASLL-------------VQEKLLRVIEYGEFERVGGSQTLQVD 134 (329)
T ss_pred hccccccccCcccccCCchhhCC---CCEEEeCChHhCCHH-------------HHHHHHHHHHcCcEEecCCCceeccc
Confidence 100 000111233333 689999999998543 223344444221 122345
Q ss_pred EEEEEEeCCCC-------CchHHHHhcccceeEecCCCC
Q 016911 348 VFVLAATNLPW-------ELDAAMLRRLEKRVSFSLIAL 379 (380)
Q Consensus 348 VlVIatTN~~~-------~Ld~aLlrRF~~~I~~plPd~ 379 (380)
+.+|++|+..- .+.+.|..|+. .+.+.+|.+
T Consensus 135 ~RiI~at~~~l~~~~~~g~fr~dL~~rl~-~~~i~lPpL 172 (329)
T TIGR02974 135 VRLVCATNADLPALAAEGRFRADLLDRLA-FDVITLPPL 172 (329)
T ss_pred eEEEEechhhHHHHhhcCchHHHHHHHhc-chhcCCCch
Confidence 78899997641 35567777874 345556553
No 166
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=98.94 E-value=2.6e-09 Score=106.28 Aligned_cols=144 Identities=19% Similarity=0.280 Sum_probs=88.2
Q ss_pred ccccccchHHHHHHHHHHHhccccCcccccccCCCCceEEEEcCCCCcHHHHHHHHHHhcC-------CeEE--------
Q 016911 207 KWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECK-------TTFF-------- 271 (380)
Q Consensus 207 ~~~~l~Gl~~~k~~L~~~l~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~l~-------~~~v-------- 271 (380)
+|..|+|++.++..+.-.+..+ ...+++|.|+||+||||+++++++.+. .++-
T Consensus 2 pf~~ivgq~~~~~al~~~~~~~------------~~g~vli~G~~G~gKttl~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (337)
T TIGR02030 2 PFTAIVGQDEMKLALLLNVIDP------------KIGGVMVMGDRGTGKSTAVRALAALLPEIKAVAGCPFNSSPSDPEM 69 (337)
T ss_pred CccccccHHHHHHHHHHHhcCC------------CCCeEEEEcCCCCCHHHHHHHHHHhhcccccccCCCCCCCCCCccc
Confidence 6889999999998876544221 236899999999999999999998772 2111
Q ss_pred -EEecc-------------------hhhh-----hhccch--HHHH--------HHHHHHHHhcCCeEEEEcCcchhhhh
Q 016911 272 -NISAS-------------------SVVS-----KWRGDS--EKLI--------KVLFELARHHAPSTIFLDEIDAIISQ 316 (380)
Q Consensus 272 -~v~~s-------------------~l~~-----~~~ge~--e~~l--------~~lf~~A~~~~p~ILfIDEiD~l~~~ 316 (380)
..+|. ++-. ...|.. ++.+ ..++.. ..+++|||||++.+.+.
T Consensus 70 ~~~~~r~~~~~~~~~~~~~~~~~~~~lP~~~t~d~l~G~~d~~~~l~~g~~~~~~GlL~~---A~~GvL~lDEi~~L~~~ 146 (337)
T TIGR02030 70 MCEEVRIRVDSQEPLSIIKKPVPVVDLPLGATEDRVCGTLDIERALTEGVKAFEPGLLAR---ANRGILYIDEVNLLEDH 146 (337)
T ss_pred cChHHhhhhhcccccccccCCCCcCCCCCCCcccceecchhHhhHhhcCCEEeecCccee---ccCCEEEecChHhCCHH
Confidence 00000 0000 111111 0100 011111 22479999999988442
Q ss_pred ccccchhhHHHHHHHHHHHHHhcC---------C-ccCCCcEEEEEEeCCCC-CchHHHHhcccceeEecCCC
Q 016911 317 RGEARSEHEASRRLKTELLIQMDG---------L-TQSDELVFVLAATNLPW-ELDAAMLRRLEKRVSFSLIA 378 (380)
Q Consensus 317 ~~~~~~~~~~~~~i~~~Ll~~ldg---------l-~~~~~~VlVIatTN~~~-~Ld~aLlrRF~~~I~~plPd 378 (380)
++..|+..|+. . ...+.++++|+|+|..+ .+.+++++||...+.++.|+
T Consensus 147 -------------~Q~~Ll~~l~~g~~~v~r~G~~~~~~~r~iviat~np~eg~l~~~LldRf~l~i~l~~p~ 206 (337)
T TIGR02030 147 -------------LVDVLLDVAASGWNVVEREGISIRHPARFVLVGSGNPEEGELRPQLLDRFGLHAEIRTVR 206 (337)
T ss_pred -------------HHHHHHHHHHhCCeEEEECCEEEEcCCCEEEEeccccccCCCCHHHHhhcceEEECCCCC
Confidence 33344554432 1 11234577888888655 59999999999888888775
No 167
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=98.94 E-value=8.7e-09 Score=92.13 Aligned_cols=133 Identities=23% Similarity=0.315 Sum_probs=84.4
Q ss_pred chHHHHHHHHHHHhccccCcccccccCCCCceEEEEcCCCCcHHHHHHHHHHhcCC-----------------------e
Q 016911 213 GLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKT-----------------------T 269 (380)
Q Consensus 213 Gl~~~k~~L~~~l~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~l~~-----------------------~ 269 (380)
|++++++.|...+..- +.+..+||+||+|+||+++|+++|..+.. .
T Consensus 1 gq~~~~~~L~~~~~~~-----------~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d 69 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSG-----------RLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPD 69 (162)
T ss_dssp S-HHHHHHHHHHHHCT-----------C--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTT
T ss_pred CcHHHHHHHHHHHHcC-----------CcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcc
Confidence 6777888888766431 33467899999999999999999997721 1
Q ss_pred EEEEecchhhhhhccchHHHHHHHHHHHH----hcCCeEEEEcCcchhhhhccccchhhHHHHHHHHHHHHHhcCCccCC
Q 016911 270 FFNISASSVVSKWRGDSEKLIKVLFELAR----HHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSD 345 (380)
Q Consensus 270 ~v~v~~s~l~~~~~ge~e~~l~~lf~~A~----~~~p~ILfIDEiD~l~~~~~~~~~~~~~~~~i~~~Ll~~ldgl~~~~ 345 (380)
++.++...... .-.-..++.+...+. .....|++|||+|.+.. ...+.|+..|+ ...
T Consensus 70 ~~~~~~~~~~~---~i~i~~ir~i~~~~~~~~~~~~~KviiI~~ad~l~~-------------~a~NaLLK~LE---epp 130 (162)
T PF13177_consen 70 FIIIKPDKKKK---SIKIDQIREIIEFLSLSPSEGKYKVIIIDEADKLTE-------------EAQNALLKTLE---EPP 130 (162)
T ss_dssp EEEEETTTSSS---SBSHHHHHHHHHHCTSS-TTSSSEEEEEETGGGS-H-------------HHHHHHHHHHH---STT
T ss_pred eEEEecccccc---hhhHHHHHHHHHHHHHHHhcCCceEEEeehHhhhhH-------------HHHHHHHHHhc---CCC
Confidence 22332221100 012234444444333 22456999999998843 35677888884 455
Q ss_pred CcEEEEEEeCCCCCchHHHHhcccceeEecC
Q 016911 346 ELVFVLAATNLPWELDAAMLRRLEKRVSFSL 376 (380)
Q Consensus 346 ~~VlVIatTN~~~~Ld~aLlrRF~~~I~~pl 376 (380)
.++.+|.+|+.++.+.+++++|+. .+.|+.
T Consensus 131 ~~~~fiL~t~~~~~il~TI~SRc~-~i~~~~ 160 (162)
T PF13177_consen 131 ENTYFILITNNPSKILPTIRSRCQ-VIRFRP 160 (162)
T ss_dssp TTEEEEEEES-GGGS-HHHHTTSE-EEEE--
T ss_pred CCEEEEEEECChHHChHHHHhhce-EEecCC
Confidence 678899999999999999999984 455544
No 168
>PRK08727 hypothetical protein; Validated
Probab=98.94 E-value=8.2e-09 Score=97.48 Aligned_cols=113 Identities=21% Similarity=0.319 Sum_probs=67.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhc---CCeEEEEecchhhhhhccchHHHHHHHHHHHHhcCCeEEEEcCcchhhhhccc
Q 016911 243 KGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGE 319 (380)
Q Consensus 243 ~~vLL~GppGtGKT~la~ala~~l---~~~~v~v~~s~l~~~~~ge~e~~l~~lf~~A~~~~p~ILfIDEiD~l~~~~~~ 319 (380)
..++|+||+|||||+|+.+++.++ +....+++..++.. .+...+.... ...+|+|||++.+......
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~~~~--------~~~~~~~~l~--~~dlLiIDDi~~l~~~~~~ 111 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQAAAG--------RLRDALEALE--GRSLVALDGLESIAGQRED 111 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHHhhh--------hHHHHHHHHh--cCCEEEEeCcccccCChHH
Confidence 459999999999999999998765 44556666544332 1222333333 3469999999988543211
Q ss_pred cchhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeC-CCCC---chHHHHhcccc--eeEecCCC
Q 016911 320 ARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATN-LPWE---LDAAMLRRLEK--RVSFSLIA 378 (380)
Q Consensus 320 ~~~~~~~~~~i~~~Ll~~ldgl~~~~~~VlVIatTN-~~~~---Ld~aLlrRF~~--~I~~plPd 378 (380)
. ..++..++...... ..+|+|+| .|.. +++++.+||.. .+.++.|+
T Consensus 112 --------~---~~lf~l~n~~~~~~--~~vI~ts~~~p~~l~~~~~dL~SRl~~~~~~~l~~~~ 163 (233)
T PRK08727 112 --------E---VALFDFHNRARAAG--ITLLYTARQMPDGLALVLPDLRSRLAQCIRIGLPVLD 163 (233)
T ss_pred --------H---HHHHHHHHHHHHcC--CeEEEECCCChhhhhhhhHHHHHHHhcCceEEecCCC
Confidence 1 12222222222222 23555665 4444 47999999844 45555554
No 169
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=98.93 E-value=6.4e-09 Score=103.17 Aligned_cols=139 Identities=16% Similarity=0.187 Sum_probs=92.4
Q ss_pred ccccccc-hHHHHHHHHHHHhccccCcccccccCCCCceEEEEcCCCCcHHHHHHHHHHhcCCe----------------
Q 016911 207 KWESIKG-LENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT---------------- 269 (380)
Q Consensus 207 ~~~~l~G-l~~~k~~L~~~l~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~l~~~---------------- 269 (380)
.|+.|.| ++.+++.+...+.. .+.+..+||+||+|+||+++|+++|+.+..+
T Consensus 3 ~~~~i~~~q~~~~~~L~~~~~~-----------~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~ 71 (329)
T PRK08058 3 TWEQLTALQPVVVKMLQNSIAK-----------NRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKR 71 (329)
T ss_pred cHHHHHhhHHHHHHHHHHHHHc-----------CCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHH
Confidence 4778888 88888888877632 1344678999999999999999999887321
Q ss_pred --------EEEEecchhhhhhccchHHHHHHHHHHHH----hcCCeEEEEcCcchhhhhccccchhhHHHHHHHHHHHHH
Q 016911 270 --------FFNISASSVVSKWRGDSEKLIKVLFELAR----HHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQ 337 (380)
Q Consensus 270 --------~v~v~~s~l~~~~~ge~e~~l~~lf~~A~----~~~p~ILfIDEiD~l~~~~~~~~~~~~~~~~i~~~Ll~~ 337 (380)
+..+... +.. -.-..++.+.+.+. .....|++|||+|.+.. ...+.|+..
T Consensus 72 ~~~~~hpD~~~i~~~---~~~--i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~-------------~a~NaLLK~ 133 (329)
T PRK08058 72 IDSGNHPDVHLVAPD---GQS--IKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTA-------------SAANSLLKF 133 (329)
T ss_pred HhcCCCCCEEEeccc---ccc--CCHHHHHHHHHHHhhCCcccCceEEEeehHhhhCH-------------HHHHHHHHH
Confidence 2222111 000 11223344433332 22346999999988832 245678888
Q ss_pred hcCCccCCCcEEEEEEeCCCCCchHHHHhcccceeEecCCC
Q 016911 338 MDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRVSFSLIA 378 (380)
Q Consensus 338 ldgl~~~~~~VlVIatTN~~~~Ld~aLlrRF~~~I~~plPd 378 (380)
++. .++.+++|.+|+.+..+.+++++|+. .++|+.|+
T Consensus 134 LEE---Pp~~~~~Il~t~~~~~ll~TIrSRc~-~i~~~~~~ 170 (329)
T PRK08058 134 LEE---PSGGTTAILLTENKHQILPTILSRCQ-VVEFRPLP 170 (329)
T ss_pred hcC---CCCCceEEEEeCChHhCcHHHHhhce-eeeCCCCC
Confidence 853 44557778888888899999999984 56777665
No 170
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=98.92 E-value=6.4e-09 Score=103.17 Aligned_cols=119 Identities=18% Similarity=0.244 Sum_probs=80.9
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHhcCC------------------------eEEEEecchhhhhhccchHHHHHHHHH
Q 016911 240 SPWKGILLFGPPGTGKTMLAKAVATECKT------------------------TFFNISASSVVSKWRGDSEKLIKVLFE 295 (380)
Q Consensus 240 ~~~~~vLL~GppGtGKT~la~ala~~l~~------------------------~~v~v~~s~l~~~~~ge~e~~l~~lf~ 295 (380)
+.+..+||+||+|+||+++|+++|+.+.. .++.+...+- +. .-.-..++.+.+
T Consensus 20 r~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~-~~--~i~id~iR~l~~ 96 (328)
T PRK05707 20 RHPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEA-DK--TIKVDQVRELVS 96 (328)
T ss_pred CcceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCC-CC--CCCHHHHHHHHH
Confidence 34567999999999999999999998843 1222221100 00 011233444444
Q ss_pred HHH----hcCCeEEEEcCcchhhhhccccchhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCCCCCchHHHHhcccce
Q 016911 296 LAR----HHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKR 371 (380)
Q Consensus 296 ~A~----~~~p~ILfIDEiD~l~~~~~~~~~~~~~~~~i~~~Ll~~ldgl~~~~~~VlVIatTN~~~~Ld~aLlrRF~~~ 371 (380)
.+. .....|++||++|.+-. ...+.|++.++ ...+++++|.+|+.++.+.++++||+..
T Consensus 97 ~~~~~~~~~~~kv~iI~~a~~m~~-------------~aaNaLLK~LE---EPp~~~~fiL~t~~~~~ll~TI~SRc~~- 159 (328)
T PRK05707 97 FVVQTAQLGGRKVVLIEPAEAMNR-------------NAANALLKSLE---EPSGDTVLLLISHQPSRLLPTIKSRCQQ- 159 (328)
T ss_pred HHhhccccCCCeEEEECChhhCCH-------------HHHHHHHHHHh---CCCCCeEEEEEECChhhCcHHHHhhcee-
Confidence 333 33456999999998843 34567888875 3455688889999999999999999965
Q ss_pred eEecCCC
Q 016911 372 VSFSLIA 378 (380)
Q Consensus 372 I~~plPd 378 (380)
+.|+.|+
T Consensus 160 ~~~~~~~ 166 (328)
T PRK05707 160 QACPLPS 166 (328)
T ss_pred eeCCCcC
Confidence 7887775
No 171
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=98.91 E-value=1.7e-09 Score=113.57 Aligned_cols=147 Identities=24% Similarity=0.328 Sum_probs=93.3
Q ss_pred CccccccchHHHHHHHHHHHhccccCcccccccCCCCceEEEEcCCCCcHHHHHHHHHHh-----------cCCeEEEEe
Q 016911 206 VKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATE-----------CKTTFFNIS 274 (380)
Q Consensus 206 ~~~~~l~Gl~~~k~~L~~~l~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~-----------l~~~~v~v~ 274 (380)
..+++++|.+...+.+.+.+... ......|||+|++||||+++|+++... .+.||+.+|
T Consensus 216 ~~f~~iiG~S~~m~~~~~~i~~~----------A~s~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~in 285 (538)
T PRK15424 216 YVLGDLLGQSPQMEQVRQTILLY----------ARSSAAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVN 285 (538)
T ss_pred cchhheeeCCHHHHHHHHHHHHH----------hCCCCcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEEee
Confidence 35788999999888888766432 234578999999999999999999987 367999999
Q ss_pred cchhhhhh-----ccchH--------HHHHHHHHHHHhcCCeEEEEcCcchhhhhccccchhhHHHHHHHHHHHHHhcCC
Q 016911 275 ASSVVSKW-----RGDSE--------KLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGL 341 (380)
Q Consensus 275 ~s~l~~~~-----~ge~e--------~~l~~lf~~A~~~~p~ILfIDEiD~l~~~~~~~~~~~~~~~~i~~~Ll~~ldgl 341 (380)
|+.+.... .|..+ .....+|+.|. +++||||||+.+... .+..|+..++.-
T Consensus 286 Caal~e~lleseLFG~~~gaftga~~~~~~Gl~e~A~---gGTLfLdeI~~Lp~~-------------~Q~kLl~~L~e~ 349 (538)
T PRK15424 286 CGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAH---GGTLFLDEIGEMPLP-------------LQTRLLRVLEEK 349 (538)
T ss_pred cccCChhhHHHHhcCCccccccCccccccCCchhccC---CCEEEEcChHhCCHH-------------HHHHHHhhhhcC
Confidence 98764321 11100 01112444443 579999999998653 223344444321
Q ss_pred --------ccCCCcEEEEEEeCCCCC-------chHHHHhcccceeEecCCCC
Q 016911 342 --------TQSDELVFVLAATNLPWE-------LDAAMLRRLEKRVSFSLIAL 379 (380)
Q Consensus 342 --------~~~~~~VlVIatTN~~~~-------Ld~aLlrRF~~~I~~plPd~ 379 (380)
....-++.+|++||..-. +.+.+..|+. .+.+.+|.+
T Consensus 350 ~~~r~G~~~~~~~dvRiIaat~~~L~~~v~~g~Fr~dL~yrL~-~~~I~lPPL 401 (538)
T PRK15424 350 EVTRVGGHQPVPVDVRVISATHCDLEEDVRQGRFRRDLFYRLS-ILRLQLPPL 401 (538)
T ss_pred eEEecCCCceeccceEEEEecCCCHHHHHhcccchHHHHHHhc-CCeecCCCh
Confidence 112234689999987411 2233444543 466677764
No 172
>PRK05642 DNA replication initiation factor; Validated
Probab=98.91 E-value=5.1e-09 Score=98.97 Aligned_cols=114 Identities=19% Similarity=0.275 Sum_probs=71.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhc---CCeEEEEecchhhhhhccchHHHHHHHHHHHHhcCCeEEEEcCcchhhhhccc
Q 016911 243 KGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGE 319 (380)
Q Consensus 243 ~~vLL~GppGtGKT~la~ala~~l---~~~~v~v~~s~l~~~~~ge~e~~l~~lf~~A~~~~p~ILfIDEiD~l~~~~~~ 319 (380)
..++|+||+|+|||+|++++++++ +...++++..++.... ..+.+.... .++|+|||++.+.+...
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~~~~~--------~~~~~~~~~--~d~LiiDDi~~~~~~~~- 114 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELLDRG--------PELLDNLEQ--YELVCLDDLDVIAGKAD- 114 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHHHhhh--------HHHHHhhhh--CCEEEEechhhhcCChH-
Confidence 678999999999999999998765 5677888887765431 122222222 35999999998744311
Q ss_pred cchhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCCCCC---chHHHHhcccceeE--ecCCC
Q 016911 320 ARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWE---LDAAMLRRLEKRVS--FSLIA 378 (380)
Q Consensus 320 ~~~~~~~~~~i~~~Ll~~ldgl~~~~~~VlVIatTN~~~~---Ld~aLlrRF~~~I~--~plPd 378 (380)
....|+..++...... ..++|+++..|.. ..+.+++||...+. +..|+
T Consensus 115 ----------~~~~Lf~l~n~~~~~g-~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~ 167 (234)
T PRK05642 115 ----------WEEALFHLFNRLRDSG-RRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLS 167 (234)
T ss_pred ----------HHHHHHHHHHHHHhcC-CEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCC
Confidence 1223444443333333 3455555555543 46899999964444 45544
No 173
>PRK12377 putative replication protein; Provisional
Probab=98.90 E-value=2e-08 Score=95.96 Aligned_cols=122 Identities=21% Similarity=0.273 Sum_probs=72.3
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhc---CCeEEEEecchhhhhhccchH--HHHHHHHHHHHhcCCeEEEEcCcchhhhh
Q 016911 242 WKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKWRGDSE--KLIKVLFELARHHAPSTIFLDEIDAIISQ 316 (380)
Q Consensus 242 ~~~vLL~GppGtGKT~la~ala~~l---~~~~v~v~~s~l~~~~~ge~e--~~l~~lf~~A~~~~p~ILfIDEiD~l~~~ 316 (380)
..+++|+||||||||+||.++|+.+ +..++.++..++......... .....++... ...++|+|||++....+
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~~l~~~~~~~~~~~~~l~~l--~~~dLLiIDDlg~~~~s 178 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMSRLHESYDNGQSGEKFLQEL--CKVDLLVLDEIGIQRET 178 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHHHHHHHHhccchHHHHHHHh--cCCCEEEEcCCCCCCCC
Confidence 3689999999999999999999988 567778888777664332110 0111223222 34579999999765321
Q ss_pred ccccchhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCCCCC-----chHHHHhcccc----eeEecCCC
Q 016911 317 RGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWE-----LDAAMLRRLEK----RVSFSLIA 378 (380)
Q Consensus 317 ~~~~~~~~~~~~~i~~~Ll~~ldgl~~~~~~VlVIatTN~~~~-----Ld~aLlrRF~~----~I~~plPd 378 (380)
. ....++..+++.- .... ..+|.|||.... +...+++|+.+ .+.|.=+|
T Consensus 179 ~--------~~~~~l~~ii~~R---~~~~--~ptiitSNl~~~~l~~~~~~ri~dRl~~~~~~~v~~~g~s 236 (248)
T PRK12377 179 K--------NEQVVLNQIIDRR---TASM--RSVGMLTNLNHEAMSTLLGERVMDRMTMNGGRWVNFNWES 236 (248)
T ss_pred H--------HHHHHHHHHHHHH---HhcC--CCEEEEcCCCHHHHHHHhhHHHHHHHhhCCCeEEEeCCcC
Confidence 1 1122333333322 2221 235779997632 56678888742 25554443
No 174
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=98.90 E-value=3.2e-09 Score=91.94 Aligned_cols=126 Identities=25% Similarity=0.349 Sum_probs=76.9
Q ss_pred chHHHHHHHHHHHhccccCcccccccCCCCceEEEEcCCCCcHHHHHHHHHHhcC---CeEEEEecchhhhhhccchHHH
Q 016911 213 GLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECK---TTFFNISASSVVSKWRGDSEKL 289 (380)
Q Consensus 213 Gl~~~k~~L~~~l~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~l~---~~~v~v~~s~l~~~~~ge~e~~ 289 (380)
|.+...+.+.+.+... ......|+|+|++||||+++|++++.... .+++.++|..+.
T Consensus 2 G~S~~~~~l~~~l~~~----------a~~~~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~~~~~~~---------- 61 (138)
T PF14532_consen 2 GKSPAMRRLRRQLERL----------AKSSSPVLITGEPGTGKSLLARALHRYSGRANGPFIVIDCASLP---------- 61 (138)
T ss_dssp -SCHHHHHHHHHHHHH----------HCSSS-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCCCHHCTC----------
T ss_pred CCCHHHHHHHHHHHHH----------hCCCCcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEechhhCc----------
Confidence 4555555665554332 13457899999999999999999998774 366667776543
Q ss_pred HHHHHHHHHhcCCeEEEEcCcchhhhhccccchhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCCCC-------CchH
Q 016911 290 IKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPW-------ELDA 362 (380)
Q Consensus 290 l~~lf~~A~~~~p~ILfIDEiD~l~~~~~~~~~~~~~~~~i~~~Ll~~ldgl~~~~~~VlVIatTN~~~-------~Ld~ 362 (380)
..+++.+ .+++|||+|+|.+... .+..|+..+.... ..++.+|+++..+- .+++
T Consensus 62 -~~~l~~a---~~gtL~l~~i~~L~~~-------------~Q~~L~~~l~~~~--~~~~RlI~ss~~~l~~l~~~~~~~~ 122 (138)
T PF14532_consen 62 -AELLEQA---KGGTLYLKNIDRLSPE-------------AQRRLLDLLKRQE--RSNVRLIASSSQDLEELVEEGRFSP 122 (138)
T ss_dssp -HHHHHHC---TTSEEEEECGCCS-HH-------------HHHHHHHHHHHCT--TTTSEEEEEECC-CCCHHHHSTHHH
T ss_pred -HHHHHHc---CCCEEEECChHHCCHH-------------HHHHHHHHHHhcC--CCCeEEEEEeCCCHHHHhhccchhH
Confidence 2234443 4689999999999543 2233444443222 33456677775542 2778
Q ss_pred HHHhcccceeEecCCC
Q 016911 363 AMLRRLEKRVSFSLIA 378 (380)
Q Consensus 363 aLlrRF~~~I~~plPd 378 (380)
.|..||.. +.+.+|+
T Consensus 123 ~L~~~l~~-~~i~lPp 137 (138)
T PF14532_consen 123 DLYYRLSQ-LEIHLPP 137 (138)
T ss_dssp HHHHHCST-CEEEE--
T ss_pred HHHHHhCC-CEEeCCC
Confidence 88888864 5677765
No 175
>PRK08116 hypothetical protein; Validated
Probab=98.90 E-value=6.3e-09 Score=100.42 Aligned_cols=124 Identities=19% Similarity=0.258 Sum_probs=73.8
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHhc---CCeEEEEecchhhhhhccc----hHHHHHHHHHHHHhcCCeEEEEcCcchh
Q 016911 241 PWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKWRGD----SEKLIKVLFELARHHAPSTIFLDEIDAI 313 (380)
Q Consensus 241 ~~~~vLL~GppGtGKT~la~ala~~l---~~~~v~v~~s~l~~~~~ge----~e~~l~~lf~~A~~~~p~ILfIDEiD~l 313 (380)
.+.+++|+|+||||||+||.++++.+ +.+++.++.+++...+... .......++.... ..++|+|||++..
T Consensus 113 ~~~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~i~~~~~~~~~~~~~~~~~~l~--~~dlLviDDlg~e 190 (268)
T PRK08116 113 ENVGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNRIKSTYKSSGKEDENEIIRSLV--NADLLILDDLGAE 190 (268)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhccccccHHHHHHHhc--CCCEEEEecccCC
Confidence 34689999999999999999999986 6788889988876544311 1111122333222 2469999999643
Q ss_pred hhhccccchhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCCCC-C----chHHHHhcc---cceeEecCCCC
Q 016911 314 ISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPW-E----LDAAMLRRL---EKRVSFSLIAL 379 (380)
Q Consensus 314 ~~~~~~~~~~~~~~~~i~~~Ll~~ldgl~~~~~~VlVIatTN~~~-~----Ld~aLlrRF---~~~I~~plPd~ 379 (380)
.. .++. ...|+..++...... ..+|.|||.+. + ++..+.+|+ ...+.+.-||+
T Consensus 191 ~~--------t~~~---~~~l~~iin~r~~~~--~~~IiTsN~~~~eL~~~~~~ri~sRl~e~~~~v~~~g~d~ 251 (268)
T PRK08116 191 RD--------TEWA---REKVYNIIDSRYRKG--LPTIVTTNLSLEELKNQYGKRIYDRILEMCTPVENEGKSY 251 (268)
T ss_pred CC--------CHHH---HHHHHHHHHHHHHCC--CCEEEECCCCHHHHHHHHhHHHHHHHHHcCEEEEeeCcCh
Confidence 11 1111 223444443322222 23677888763 2 456777775 33455555553
No 176
>PRK08181 transposase; Validated
Probab=98.88 E-value=4.2e-09 Score=101.74 Aligned_cols=122 Identities=20% Similarity=0.305 Sum_probs=73.0
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHhc---CCeEEEEecchhhhhhccch-HHHHHHHHHHHHhcCCeEEEEcCcchhhhh
Q 016911 241 PWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKWRGDS-EKLIKVLFELARHHAPSTIFLDEIDAIISQ 316 (380)
Q Consensus 241 ~~~~vLL~GppGtGKT~la~ala~~l---~~~~v~v~~s~l~~~~~ge~-e~~l~~lf~~A~~~~p~ILfIDEiD~l~~~ 316 (380)
...+++|+||||||||+||.+++.++ +..++.++..++........ .......+.... .+++|+|||++.+..+
T Consensus 105 ~~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l~~a~~~~~~~~~l~~l~--~~dLLIIDDlg~~~~~ 182 (269)
T PRK08181 105 KGANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKLQVARRELQLESAIAKLD--KFDLLILDDLAYVTKD 182 (269)
T ss_pred cCceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHHHHHHhCCcHHHHHHHHh--cCCEEEEeccccccCC
Confidence 45789999999999999999999765 67788888888776543211 111222333322 3679999999876432
Q ss_pred ccccchhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCCCCC----------chHHHHhcccc---eeEecCCC
Q 016911 317 RGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWE----------LDAAMLRRLEK---RVSFSLIA 378 (380)
Q Consensus 317 ~~~~~~~~~~~~~i~~~Ll~~ldgl~~~~~~VlVIatTN~~~~----------Ld~aLlrRF~~---~I~~plPd 378 (380)
.. .... |+..++..... . .+|.|||.+.. +..++++|+-+ .+.|.=+|
T Consensus 183 ~~--------~~~~---Lf~lin~R~~~-~--s~IiTSN~~~~~w~~~~~D~~~a~aildRL~h~~~~i~~~g~s 243 (269)
T PRK08181 183 QA--------ETSV---LFELISARYER-R--SILITANQPFGEWNRVFPDPAMTLAAVDRLVHHATIFEMNVES 243 (269)
T ss_pred HH--------HHHH---HHHHHHHHHhC-C--CEEEEcCCCHHHHHHhcCCccchhhHHHhhhcCceEEecCCcc
Confidence 11 1222 33333322222 2 36778988742 33567777633 34444333
No 177
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=98.88 E-value=1.3e-08 Score=100.54 Aligned_cols=143 Identities=14% Similarity=0.191 Sum_probs=93.8
Q ss_pred ccccccchHHHHHHHHHHHhccccCcccccccCCCCceEEEEcCCCCcHHHHHHHHHHhcCCe-----------------
Q 016911 207 KWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT----------------- 269 (380)
Q Consensus 207 ~~~~l~Gl~~~k~~L~~~l~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~l~~~----------------- 269 (380)
.|++|+|++.+++.+...+..- +-+..+||+||+|+||+++|.++|+.+...
T Consensus 2 ~f~~iiGq~~~~~~L~~~i~~~-----------rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hP 70 (314)
T PRK07399 2 LFANLIGQPLAIELLTAAIKQN-----------RIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHP 70 (314)
T ss_pred cHHHhCCHHHHHHHHHHHHHhC-----------CCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCC
Confidence 4789999999999999887431 234689999999999999999999887221
Q ss_pred -EEEEecchhh-hh--------hcc-------c-hHHHHHHHHHHHH----hcCCeEEEEcCcchhhhhccccchhhHHH
Q 016911 270 -FFNISASSVV-SK--------WRG-------D-SEKLIKVLFELAR----HHAPSTIFLDEIDAIISQRGEARSEHEAS 327 (380)
Q Consensus 270 -~v~v~~s~l~-~~--------~~g-------e-~e~~l~~lf~~A~----~~~p~ILfIDEiD~l~~~~~~~~~~~~~~ 327 (380)
++.+.+.... +. ..| . .-..++.+...+. .....|++||++|.+-.
T Consensus 71 Dl~~i~p~~~~~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~~------------ 138 (314)
T PRK07399 71 DLLWVEPTYQHQGKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMNE------------ 138 (314)
T ss_pred CEEEEeccccccccccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhcCH------------
Confidence 1222211000 00 000 0 0123344444333 23457999999998832
Q ss_pred HHHHHHHHHHhcCCccCCCcEEEEEEeCCCCCchHHHHhcccceeEecCCC
Q 016911 328 RRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRVSFSLIA 378 (380)
Q Consensus 328 ~~i~~~Ll~~ldgl~~~~~~VlVIatTN~~~~Ld~aLlrRF~~~I~~plPd 378 (380)
...+.|+..++.. + +.++|.+|+.++.+-+++++|+. .+.|+.|+
T Consensus 139 -~aaNaLLK~LEEP---p-~~~fILi~~~~~~Ll~TI~SRcq-~i~f~~l~ 183 (314)
T PRK07399 139 -AAANALLKTLEEP---G-NGTLILIAPSPESLLPTIVSRCQ-IIPFYRLS 183 (314)
T ss_pred -HHHHHHHHHHhCC---C-CCeEEEEECChHhCcHHHHhhce-EEecCCCC
Confidence 2456788888643 3 34567788889999999999984 57776664
No 178
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=98.87 E-value=3e-09 Score=111.61 Aligned_cols=147 Identities=24% Similarity=0.309 Sum_probs=93.4
Q ss_pred CccccccchHHHHHHHHHHHhccccCcccccccCCCCceEEEEcCCCCcHHHHHHHHHHhc---CCeEEEEecchhhhhh
Q 016911 206 VKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKW 282 (380)
Q Consensus 206 ~~~~~l~Gl~~~k~~L~~~l~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~l---~~~~v~v~~s~l~~~~ 282 (380)
..|++++|.+...+.+.+.+... ......|||+|++||||+++|+++.... +.||+.++|..+....
T Consensus 209 ~~f~~iiG~S~~m~~~~~~i~~~----------A~~~~pVLI~GE~GTGKe~lA~~IH~~S~r~~~pfv~inC~~l~e~l 278 (526)
T TIGR02329 209 YRLDDLLGASAPMEQVRALVRLY----------ARSDATVLILGESGTGKELVAQAIHQLSGRRDFPFVAINCGAIAESL 278 (526)
T ss_pred cchhheeeCCHHHHHHHHHHHHH----------hCCCCcEEEECCCCcCHHHHHHHHHHhcCcCCCCEEEeccccCChhH
Confidence 45889999999888888766432 2345789999999999999999999765 6799999998764321
Q ss_pred -----ccchH--------HHHHHHHHHHHhcCCeEEEEcCcchhhhhccccchhhHHHHHHHHHHHHHhcCC--------
Q 016911 283 -----RGDSE--------KLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGL-------- 341 (380)
Q Consensus 283 -----~ge~e--------~~l~~lf~~A~~~~p~ILfIDEiD~l~~~~~~~~~~~~~~~~i~~~Ll~~ldgl-------- 341 (380)
.|..+ .....+|+.|. +++||||||+.+... ++..|+..++.-
T Consensus 279 leseLFG~~~gaftga~~~~~~Gl~e~A~---gGTLfLdeI~~Lp~~-------------~Q~~Ll~~L~~~~~~r~g~~ 342 (526)
T TIGR02329 279 LEAELFGYEEGAFTGARRGGRTGLIEAAH---RGTLFLDEIGEMPLP-------------LQTRLLRVLEEREVVRVGGT 342 (526)
T ss_pred HHHHhcCCcccccccccccccccchhhcC---CceEEecChHhCCHH-------------HHHHHHHHHhcCcEEecCCC
Confidence 11100 01122344443 579999999998653 223344444321
Q ss_pred ccCCCcEEEEEEeCCCC-------CchHHHHhcccceeEecCCCC
Q 016911 342 TQSDELVFVLAATNLPW-------ELDAAMLRRLEKRVSFSLIAL 379 (380)
Q Consensus 342 ~~~~~~VlVIatTN~~~-------~Ld~aLlrRF~~~I~~plPd~ 379 (380)
....-++.+|++|+..- .+.+.|..|+. .+.+.+|.+
T Consensus 343 ~~~~~dvRiIaat~~~l~~~v~~g~fr~dL~~rL~-~~~I~lPPL 386 (526)
T TIGR02329 343 EPVPVDVRVVAATHCALTTAVQQGRFRRDLFYRLS-ILRIALPPL 386 (526)
T ss_pred ceeeecceEEeccCCCHHHHhhhcchhHHHHHhcC-CcEEeCCCc
Confidence 11123467899998742 13334444553 356666654
No 179
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=98.87 E-value=8.9e-09 Score=106.28 Aligned_cols=122 Identities=14% Similarity=0.240 Sum_probs=76.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhc-----CCeEEEEecchhhhhhccchHH---HHHHHHHHHHhcCCeEEEEcCcchh
Q 016911 242 WKGILLFGPPGTGKTMLAKAVATEC-----KTTFFNISASSVVSKWRGDSEK---LIKVLFELARHHAPSTIFLDEIDAI 313 (380)
Q Consensus 242 ~~~vLL~GppGtGKT~la~ala~~l-----~~~~v~v~~s~l~~~~~ge~e~---~l~~lf~~A~~~~p~ILfIDEiD~l 313 (380)
...++|+|++|+|||+|++++++.+ +..++++++.++...+...... .+...... ....++|+|||++.+
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~~~~~~~l~~~~~~~~~~~~~--~~~~dvLiIDDiq~l 218 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFARKAVDILQKTHKEIEQFKNE--ICQNDVLIIDDVQFL 218 (450)
T ss_pred cCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHHhhhHHHHHHHH--hccCCEEEEeccccc
Confidence 3579999999999999999999865 4678889988887665533222 12222122 224579999999988
Q ss_pred hhhccccchhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCCC-C---CchHHHHhcccceeEecCCC
Q 016911 314 ISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLP-W---ELDAAMLRRLEKRVSFSLIA 378 (380)
Q Consensus 314 ~~~~~~~~~~~~~~~~i~~~Ll~~ldgl~~~~~~VlVIatTN~~-~---~Ld~aLlrRF~~~I~~plPd 378 (380)
.++. .....|...++......+ .+|.|++.+ . .+++.+.+||...+.+++..
T Consensus 219 ~~k~-----------~~~e~lf~l~N~~~~~~k--~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~ 274 (450)
T PRK14087 219 SYKE-----------KTNEIFFTIFNNFIENDK--QLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQK 274 (450)
T ss_pred cCCH-----------HHHHHHHHHHHHHHHcCC--cEEEECCCCHHHHhhccHHHHHHHhCCceeccCC
Confidence 5321 122233333333333333 245566654 3 36789999997665555543
No 180
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=98.87 E-value=4.3e-09 Score=104.26 Aligned_cols=145 Identities=24% Similarity=0.238 Sum_probs=92.1
Q ss_pred cccccchHHHHHHHHHHHhccccCcccccccCCCCceEEEEcCCCCcHHHHHHHHHHhc---CCeEEEEecchhhhh---
Q 016911 208 WESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSK--- 281 (380)
Q Consensus 208 ~~~l~Gl~~~k~~L~~~l~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~l---~~~~v~v~~s~l~~~--- 281 (380)
+++++|.+...+.+.+.+... ......|||+|++||||+++|+++.... +.+|+.++|..+...
T Consensus 5 ~~~liG~S~~~~~~~~~i~~~----------a~~~~pVlI~GE~GtGK~~lA~~iH~~s~r~~~pfv~v~c~~~~~~~~~ 74 (326)
T PRK11608 5 KDNLLGEANSFLEVLEQVSRL----------APLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLLD 74 (326)
T ss_pred cCccEECCHHHHHHHHHHHHH----------hCCCCCEEEECCCCCcHHHHHHHHHHhCCccCCCeEEEeCCCCCHHHHH
Confidence 567899888888887766442 2345789999999999999999998776 469999999876322
Q ss_pred --hccchH-------HHHHHHHHHHHhcCCeEEEEcCcchhhhhccccchhhHHHHHHHHHHHHHhcCCc--------cC
Q 016911 282 --WRGDSE-------KLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT--------QS 344 (380)
Q Consensus 282 --~~ge~e-------~~l~~lf~~A~~~~p~ILfIDEiD~l~~~~~~~~~~~~~~~~i~~~Ll~~ldgl~--------~~ 344 (380)
+.|... ......+..+ .+++|||||++.+... .+..|+..++.-. ..
T Consensus 75 ~~lfg~~~~~~~g~~~~~~g~l~~a---~gGtL~l~~i~~L~~~-------------~Q~~L~~~l~~~~~~~~g~~~~~ 138 (326)
T PRK11608 75 SELFGHEAGAFTGAQKRHPGRFERA---DGGTLFLDELATAPML-------------VQEKLLRVIEYGELERVGGSQPL 138 (326)
T ss_pred HHHccccccccCCcccccCCchhcc---CCCeEEeCChhhCCHH-------------HHHHHHHHHhcCcEEeCCCCcee
Confidence 111100 0001123333 3679999999998643 2333444443211 11
Q ss_pred CCcEEEEEEeCCC-------CCchHHHHhcccceeEecCCCC
Q 016911 345 DELVFVLAATNLP-------WELDAAMLRRLEKRVSFSLIAL 379 (380)
Q Consensus 345 ~~~VlVIatTN~~-------~~Ld~aLlrRF~~~I~~plPd~ 379 (380)
..++.||++|+.. ..+.+.|..||. .+.+.+|.+
T Consensus 139 ~~~~RiI~~s~~~l~~l~~~g~f~~dL~~~l~-~~~i~lPpL 179 (326)
T PRK11608 139 QVNVRLVCATNADLPAMVAEGKFRADLLDRLA-FDVVQLPPL 179 (326)
T ss_pred eccEEEEEeCchhHHHHHHcCCchHHHHHhcC-CCEEECCCh
Confidence 2347888888764 235577777884 245555553
No 181
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=98.85 E-value=1e-08 Score=111.03 Aligned_cols=147 Identities=26% Similarity=0.341 Sum_probs=93.5
Q ss_pred CCccccccchHHHHHHHHHHHhccccCcccccccCCCCceEEEEcCCCCcHHHHHHHHHHhc---CCeEEEEecchhhhh
Q 016911 205 DVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSK 281 (380)
Q Consensus 205 ~~~~~~l~Gl~~~k~~L~~~l~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~l---~~~~v~v~~s~l~~~ 281 (380)
+..+++++|.+..++.+.+.+... .....+|||+|++|||||++|++++... +.+++.++|..+...
T Consensus 372 n~~~~~liG~S~~~~~~~~~~~~~----------a~~~~pVLI~GE~GTGK~~lA~~ih~~s~r~~~~~v~i~c~~~~~~ 441 (686)
T PRK15429 372 DSEFGEIIGRSEAMYSVLKQVEMV----------AQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAG 441 (686)
T ss_pred cccccceeecCHHHHHHHHHHHHH----------hCCCCCEEEECCCCcCHHHHHHHHHHhcCCCCCCeEEEecccCChh
Confidence 345789999999888887666442 2345689999999999999999998866 579999999876332
Q ss_pred -----hccc--------hHHHHHHHHHHHHhcCCeEEEEcCcchhhhhccccchhhHHHHHHHHHHHHHhcCC-------
Q 016911 282 -----WRGD--------SEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGL------- 341 (380)
Q Consensus 282 -----~~ge--------~e~~l~~lf~~A~~~~p~ILfIDEiD~l~~~~~~~~~~~~~~~~i~~~Ll~~ldgl------- 341 (380)
..|. .... ...++.+ .+++||||||+.+... ++..|+..++.-
T Consensus 442 ~~~~~lfg~~~~~~~g~~~~~-~g~le~a---~~GtL~Ldei~~L~~~-------------~Q~~L~~~l~~~~~~~~g~ 504 (686)
T PRK15429 442 LLESDLFGHERGAFTGASAQR-IGRFELA---DKSSLFLDEVGDMPLE-------------LQPKLLRVLQEQEFERLGS 504 (686)
T ss_pred HhhhhhcCcccccccccccch-hhHHHhc---CCCeEEEechhhCCHH-------------HHHHHHHHHHhCCEEeCCC
Confidence 1111 1111 1223333 3589999999998543 223344444321
Q ss_pred -ccCCCcEEEEEEeCCCC-------CchHHHHhcccceeEecCCCC
Q 016911 342 -TQSDELVFVLAATNLPW-------ELDAAMLRRLEKRVSFSLIAL 379 (380)
Q Consensus 342 -~~~~~~VlVIatTN~~~-------~Ld~aLlrRF~~~I~~plPd~ 379 (380)
.....++.+|++|+..- .+.+.+..|+. .+.+.+|.+
T Consensus 505 ~~~~~~~~RiI~~t~~~l~~~~~~~~f~~~L~~~l~-~~~i~lPpL 549 (686)
T PRK15429 505 NKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLN-VFPIHLPPL 549 (686)
T ss_pred CCcccceEEEEEeCCCCHHHHHHcCcccHHHHhccC-eeEEeCCCh
Confidence 11224578999998742 13334444553 456677764
No 182
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=98.84 E-value=7.7e-09 Score=96.95 Aligned_cols=137 Identities=22% Similarity=0.230 Sum_probs=87.9
Q ss_pred cCCCCccccccchHHHHHHHHHHHhccccCcccccccCCCCceEEEEcCCCCcHHHHHHHHHHhc-C----CeEEEEecc
Q 016911 202 GSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC-K----TTFFNISAS 276 (380)
Q Consensus 202 ~~p~~~~~~l~Gl~~~k~~L~~~l~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~l-~----~~~v~v~~s 276 (380)
..+...+.+|+|.++.+..+.-.... ..-.+++|.||||+||||-+.++|.++ | -.+.++|++
T Consensus 20 KYrP~~l~dIVGNe~tv~rl~via~~------------gnmP~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLELNAS 87 (333)
T KOG0991|consen 20 KYRPSVLQDIVGNEDTVERLSVIAKE------------GNMPNLIISGPPGTGKTTSILCLARELLGDSYKEAVLELNAS 87 (333)
T ss_pred hhCchHHHHhhCCHHHHHHHHHHHHc------------CCCCceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhccCc
Confidence 34666789999999999988865432 223689999999999999999999988 2 245677776
Q ss_pred hhhhhhccchHHHHHHHHHHHHh-c---CCeEEEEcCcchhhhhccccchhhHHHHHHHHHHHHHhcCCccCCCcEEEEE
Q 016911 277 SVVSKWRGDSEKLIKVLFELARH-H---APSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLA 352 (380)
Q Consensus 277 ~l~~~~~ge~e~~l~~lf~~A~~-~---~p~ILfIDEiD~l~~~~~~~~~~~~~~~~i~~~Ll~~ldgl~~~~~~VlVIa 352 (380)
+-.+- ......++. |.+-+- . ...||+|||+|++.... +...++... + +.....+..
T Consensus 88 deRGI--DvVRn~IK~-FAQ~kv~lp~grhKIiILDEADSMT~gA------QQAlRRtME-i---------yS~ttRFal 148 (333)
T KOG0991|consen 88 DERGI--DVVRNKIKM-FAQKKVTLPPGRHKIIILDEADSMTAGA------QQALRRTME-I---------YSNTTRFAL 148 (333)
T ss_pred ccccc--HHHHHHHHH-HHHhhccCCCCceeEEEeeccchhhhHH------HHHHHHHHH-H---------Hcccchhhh
Confidence 64321 112223332 333332 2 23599999999985322 122333321 1 112234678
Q ss_pred EeCCCCCchHHHHhccc
Q 016911 353 ATNLPWELDAAMLRRLE 369 (380)
Q Consensus 353 tTN~~~~Ld~aLlrRF~ 369 (380)
++|..+.+-+++.+|+.
T Consensus 149 aCN~s~KIiEPIQSRCA 165 (333)
T KOG0991|consen 149 ACNQSEKIIEPIQSRCA 165 (333)
T ss_pred hhcchhhhhhhHHhhhH
Confidence 99998888888888653
No 183
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=98.84 E-value=3.4e-09 Score=106.97 Aligned_cols=134 Identities=22% Similarity=0.313 Sum_probs=90.5
Q ss_pred CCccccccchHHHHHHHHHHHhccccCcccccccCCCCceEEEEcCCCCcHHHHHHHHHHhc----CCeEEEEecchhhh
Q 016911 205 DVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC----KTTFFNISASSVVS 280 (380)
Q Consensus 205 ~~~~~~l~Gl~~~k~~L~~~l~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~l----~~~~v~v~~s~l~~ 280 (380)
...+.+++|.+...+.+.+.++. ....+.+||+.|++||||+.+|++|+... +.||+.+||+.+..
T Consensus 74 ~~~~~~LIG~~~~~~~~~eqik~----------~ap~~~~vLi~GetGtGKel~A~~iH~~s~r~~~~PFI~~NCa~~~e 143 (403)
T COG1221 74 SEALDDLIGESPSLQELREQIKA----------YAPSGLPVLIIGETGTGKELFARLIHALSARRAEAPFIAFNCAAYSE 143 (403)
T ss_pred chhhhhhhccCHHHHHHHHHHHh----------hCCCCCcEEEecCCCccHHHHHHHHHHhhhcccCCCEEEEEHHHhCc
Confidence 34588999999888888876644 22456899999999999999999997543 67999999987643
Q ss_pred hhcc---------c---hHHHHHHHHHHHHhcCCeEEEEcCcchhhhhccccchhhHHHHHHHHHHHHHhcC--------
Q 016911 281 KWRG---------D---SEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDG-------- 340 (380)
Q Consensus 281 ~~~g---------e---~e~~l~~lf~~A~~~~p~ILfIDEiD~l~~~~~~~~~~~~~~~~i~~~Ll~~ldg-------- 340 (380)
.... . ....-..+|+.|. +++||+|||..+.+.. +..|+..++.
T Consensus 144 n~~~~eLFG~~kGaftGa~~~k~Glfe~A~---GGtLfLDEI~~LP~~~-------------Q~kLl~~le~g~~~rvG~ 207 (403)
T COG1221 144 NLQEAELFGHEKGAFTGAQGGKAGLFEQAN---GGTLFLDEIHRLPPEG-------------QEKLLRVLEEGEYRRVGG 207 (403)
T ss_pred CHHHHHHhccccceeecccCCcCchheecC---CCEEehhhhhhCCHhH-------------HHHHHHHHHcCceEecCC
Confidence 3221 0 1112233555555 5899999999997642 2234444443
Q ss_pred CccCCCcEEEEEEeCCCCCchHHHHh
Q 016911 341 LTQSDELVFVLAATNLPWELDAAMLR 366 (380)
Q Consensus 341 l~~~~~~VlVIatTN~~~~Ld~aLlr 366 (380)
-.....+|.+|++||. +++.+++.
T Consensus 208 ~~~~~~dVRli~AT~~--~l~~~~~~ 231 (403)
T COG1221 208 SQPRPVDVRLICATTE--DLEEAVLA 231 (403)
T ss_pred CCCcCCCceeeecccc--CHHHHHHh
Confidence 2234456889999986 55554444
No 184
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=98.83 E-value=9.6e-09 Score=107.88 Aligned_cols=149 Identities=24% Similarity=0.290 Sum_probs=94.6
Q ss_pred CCCccccccchHHHHHHHHHHHhccccCcccccccCCCCceEEEEcCCCCcHHHHHHHHHHhc---CCeEEEEecchhhh
Q 016911 204 PDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVS 280 (380)
Q Consensus 204 p~~~~~~l~Gl~~~k~~L~~~l~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~l---~~~~v~v~~s~l~~ 280 (380)
....|++++|.+...+.+.+.+... ......+||+|++||||+++|+++.... +.+|+.++|+.+..
T Consensus 199 ~~~~f~~~ig~s~~~~~~~~~~~~~----------A~~~~pvlI~GE~GtGK~~lA~aiH~~s~r~~~pfv~inca~~~~ 268 (520)
T PRK10820 199 DDSAFSQIVAVSPKMRQVVEQARKL----------AMLDAPLLITGDTGTGKDLLAYACHLRSPRGKKPFLALNCASIPD 268 (520)
T ss_pred ccccccceeECCHHHHHHHHHHHHH----------hCCCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeccccCCH
Confidence 4557899999998777776654331 1234679999999999999999998765 46999999987643
Q ss_pred hh-----ccchH-------HHHHHHHHHHHhcCCeEEEEcCcchhhhhccccchhhHHHHHHHHHHHHHhcCC-------
Q 016911 281 KW-----RGDSE-------KLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGL------- 341 (380)
Q Consensus 281 ~~-----~ge~e-------~~l~~lf~~A~~~~p~ILfIDEiD~l~~~~~~~~~~~~~~~~i~~~Ll~~ldgl------- 341 (380)
.. .|... .....+|+.|. +++||||||+.+.+.. +..|+..+..-
T Consensus 269 ~~~e~elFG~~~~~~~~~~~~~~g~~e~a~---~GtL~LdeI~~L~~~~-------------Q~~Ll~~l~~~~~~~~g~ 332 (520)
T PRK10820 269 DVVESELFGHAPGAYPNALEGKKGFFEQAN---GGSVLLDEIGEMSPRM-------------QAKLLRFLNDGTFRRVGE 332 (520)
T ss_pred HHHHHHhcCCCCCCcCCcccCCCChhhhcC---CCEEEEeChhhCCHHH-------------HHHHHHHHhcCCcccCCC
Confidence 21 11100 00112344433 5799999999986532 23344444221
Q ss_pred -ccCCCcEEEEEEeCCCC-------CchHHHHhcccceeEecCCCC
Q 016911 342 -TQSDELVFVLAATNLPW-------ELDAAMLRRLEKRVSFSLIAL 379 (380)
Q Consensus 342 -~~~~~~VlVIatTN~~~-------~Ld~aLlrRF~~~I~~plPd~ 379 (380)
.....++.||++|+.+- .+.+.|..|+.. +.+.+|.+
T Consensus 333 ~~~~~~~vRiI~st~~~l~~l~~~g~f~~dL~~rL~~-~~i~lPpL 377 (520)
T PRK10820 333 DHEVHVDVRVICATQKNLVELVQKGEFREDLYYRLNV-LTLNLPPL 377 (520)
T ss_pred CcceeeeeEEEEecCCCHHHHHHcCCccHHHHhhcCe-eEEeCCCc
Confidence 11123477888887642 244667777753 67777765
No 185
>PRK09862 putative ATP-dependent protease; Provisional
Probab=98.83 E-value=1.3e-08 Score=106.13 Aligned_cols=142 Identities=25% Similarity=0.289 Sum_probs=86.7
Q ss_pred ccccccchHHHHHHHHHHHhccccCcccccccCCCCceEEEEcCCCCcHHHHHHHHHHhcCC----eEEEEec-------
Q 016911 207 KWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKT----TFFNISA------- 275 (380)
Q Consensus 207 ~~~~l~Gl~~~k~~L~~~l~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~l~~----~~v~v~~------- 275 (380)
.+.++.|...+++.+.-. ...+.+++|.||||+|||++++.++..+.- ..+.+..
T Consensus 189 d~~~v~Gq~~~~~al~la--------------a~~G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i~s~~g~ 254 (506)
T PRK09862 189 DLSDVIGQEQGKRGLEIT--------------AAGGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAILSLVNA 254 (506)
T ss_pred CeEEEECcHHHHhhhhee--------------ccCCcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchhhhhhcc
Confidence 577788887766654321 245679999999999999999999986621 1111111
Q ss_pred -----------------chhhhhhccchHHHHHHHHHHHHhcCCeEEEEcCcchhhhhccccchhhHHHHHHHHHHHHHh
Q 016911 276 -----------------SSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQM 338 (380)
Q Consensus 276 -----------------s~l~~~~~ge~e~~l~~lf~~A~~~~p~ILfIDEiD~l~~~~~~~~~~~~~~~~i~~~Ll~~l 338 (380)
+.-....+|.....-...+..|. .++|||||++.+.. .++..|+..|
T Consensus 255 ~~~~~~~~~rPfr~ph~~~s~~~l~GGg~~~~pG~l~~A~---gGvLfLDEi~e~~~-------------~~~~~L~~~L 318 (506)
T PRK09862 255 ESVQKQWRQRPFRSPHHSASLTAMVGGGAIPGPGEISLAH---NGVLFLDELPEFER-------------RTLDALREPI 318 (506)
T ss_pred ccccCCcCCCCccCCCccchHHHHhCCCceehhhHhhhcc---CCEEecCCchhCCH-------------HHHHHHHHHH
Confidence 00000112221111122344444 47999999987632 2344444444
Q ss_pred cCC----------ccCCCcEEEEEEeCCCC---------------------CchHHHHhcccceeEecCCC
Q 016911 339 DGL----------TQSDELVFVLAATNLPW---------------------ELDAAMLRRLEKRVSFSLIA 378 (380)
Q Consensus 339 dgl----------~~~~~~VlVIatTN~~~---------------------~Ld~aLlrRF~~~I~~plPd 378 (380)
+.- .....++.+|+|+|... .++.++++||+..+.++.|+
T Consensus 319 E~g~v~I~r~g~~~~~pa~f~lIAa~NP~pcG~~~~~~c~c~~~~~~~Y~~~ls~plLDRfdL~v~v~~~~ 389 (506)
T PRK09862 319 ESGQIHLSRTRAKITYPARFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLDRFDLSLEIPLPP 389 (506)
T ss_pred HcCcEEEecCCcceeccCCEEEEEeecCccceecCCCCCCcCHHHHHHHHhhCCHhHHhhccEEEEeCCCC
Confidence 221 11234588999999753 37789999999999999875
No 186
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=98.83 E-value=1.7e-08 Score=105.82 Aligned_cols=146 Identities=25% Similarity=0.308 Sum_probs=93.7
Q ss_pred ccccccchHHHHHHHHHHHhccccCcccccccCCCCceEEEEcCCCCcHHHHHHHHHHhc---CCeEEEEecchhhhhh-
Q 016911 207 KWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKW- 282 (380)
Q Consensus 207 ~~~~l~Gl~~~k~~L~~~l~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~l---~~~~v~v~~s~l~~~~- 282 (380)
...+++|.+..++.+.+.+... ......|||+|++||||+++|++++... +.+|+.++|..+....
T Consensus 185 ~~~~iig~s~~~~~~~~~i~~~----------a~~~~pVlI~Ge~GtGK~~~A~~ih~~s~r~~~p~v~v~c~~~~~~~~ 254 (509)
T PRK05022 185 KEGEMIGQSPAMQQLKKEIEVV----------AASDLNVLILGETGVGKELVARAIHAASPRADKPLVYLNCAALPESLA 254 (509)
T ss_pred cCCceeecCHHHHHHHHHHHHH----------hCCCCcEEEECCCCccHHHHHHHHHHhCCcCCCCeEEEEcccCChHHH
Confidence 4678999999888888776442 2445789999999999999999999876 5799999998774321
Q ss_pred ----ccchH-------HHHHHHHHHHHhcCCeEEEEcCcchhhhhccccchhhHHHHHHHHHHHHHhcCC--------cc
Q 016911 283 ----RGDSE-------KLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGL--------TQ 343 (380)
Q Consensus 283 ----~ge~e-------~~l~~lf~~A~~~~p~ILfIDEiD~l~~~~~~~~~~~~~~~~i~~~Ll~~ldgl--------~~ 343 (380)
.|... ......|..+ .+++|||||||.+... .+..|+..++.- ..
T Consensus 255 e~~lfG~~~g~~~ga~~~~~g~~~~a---~gGtL~ldeI~~L~~~-------------~Q~~Ll~~l~~~~~~~~g~~~~ 318 (509)
T PRK05022 255 ESELFGHVKGAFTGAISNRSGKFELA---DGGTLFLDEIGELPLA-------------LQAKLLRVLQYGEIQRVGSDRS 318 (509)
T ss_pred HHHhcCccccccCCCcccCCcchhhc---CCCEEEecChhhCCHH-------------HHHHHHHHHhcCCEeeCCCCcc
Confidence 11100 0001123333 3679999999998643 223344443221 11
Q ss_pred CCCcEEEEEEeCCCC-------CchHHHHhcccceeEecCCCC
Q 016911 344 SDELVFVLAATNLPW-------ELDAAMLRRLEKRVSFSLIAL 379 (380)
Q Consensus 344 ~~~~VlVIatTN~~~-------~Ld~aLlrRF~~~I~~plPd~ 379 (380)
...++.+|++|+..- .+.+.|..|+. .+.+.+|.+
T Consensus 319 ~~~~~RiI~~t~~~l~~~~~~~~f~~dL~~rl~-~~~i~lPpL 360 (509)
T PRK05022 319 LRVDVRVIAATNRDLREEVRAGRFRADLYHRLS-VFPLSVPPL 360 (509)
T ss_pred eecceEEEEecCCCHHHHHHcCCccHHHHhccc-ccEeeCCCc
Confidence 223578999998742 24455555653 356667764
No 187
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=98.82 E-value=1.2e-08 Score=107.31 Aligned_cols=149 Identities=29% Similarity=0.326 Sum_probs=93.7
Q ss_pred CCCccccccchHHHHHHHHHHHhccccCcccccccCCCCceEEEEcCCCCcHHHHHHHHHHhc---CCeEEEEecchhhh
Q 016911 204 PDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVS 280 (380)
Q Consensus 204 p~~~~~~l~Gl~~~k~~L~~~l~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~l---~~~~v~v~~s~l~~ 280 (380)
+...++.++|.+...+.+.+.+... ......|||+|++||||+++|++++... +.+|+.++|..+..
T Consensus 191 ~~~~~~~liG~s~~~~~~~~~~~~~----------a~~~~pvli~Ge~GtGK~~lA~~ih~~s~r~~~pfv~i~c~~~~~ 260 (534)
T TIGR01817 191 RSGKEDGIIGKSPAMRQVVDQARVV----------ARSNSTVLLRGESGTGKELIAKAIHYLSPRAKRPFVKVNCAALSE 260 (534)
T ss_pred ccCccCceEECCHHHHHHHHHHHHH----------hCcCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeecCCCCH
Confidence 4456889999999888888766442 2345789999999999999999999876 56999999987633
Q ss_pred hhc-----cchHH-------HHHHHHHHHHhcCCeEEEEcCcchhhhhccccchhhHHHHHHHHHHHHHhcCCc------
Q 016911 281 KWR-----GDSEK-------LIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT------ 342 (380)
Q Consensus 281 ~~~-----ge~e~-------~l~~lf~~A~~~~p~ILfIDEiD~l~~~~~~~~~~~~~~~~i~~~Ll~~ldgl~------ 342 (380)
... |.... .....+..+ .+++|||||++.+... .+..|+..++.-.
T Consensus 261 ~~~~~~lfg~~~~~~~~~~~~~~g~~~~a---~~GtL~ldei~~L~~~-------------~Q~~Ll~~l~~~~~~~~~~ 324 (534)
T TIGR01817 261 TLLESELFGHEKGAFTGAIAQRKGRFELA---DGGTLFLDEIGEISPA-------------FQAKLLRVLQEGEFERVGG 324 (534)
T ss_pred HHHHHHHcCCCCCccCCCCcCCCCccccc---CCCeEEEechhhCCHH-------------HHHHHHHHHhcCcEEECCC
Confidence 211 10000 000112222 3579999999998643 2333444443211
Q ss_pred --cCCCcEEEEEEeCCCC-------CchHHHHhcccceeEecCCCC
Q 016911 343 --QSDELVFVLAATNLPW-------ELDAAMLRRLEKRVSFSLIAL 379 (380)
Q Consensus 343 --~~~~~VlVIatTN~~~-------~Ld~aLlrRF~~~I~~plPd~ 379 (380)
....++.+|++|+..- .+.+.|..|+. .+.+.+|.+
T Consensus 325 ~~~~~~~~riI~~s~~~l~~~~~~~~f~~~L~~rl~-~~~i~lPpL 369 (534)
T TIGR01817 325 NRTLKVDVRLVAATNRDLEEAVAKGEFRADLYYRIN-VVPIFLPPL 369 (534)
T ss_pred CceEeecEEEEEeCCCCHHHHHHcCCCCHHHHHHhc-CCeeeCCCc
Confidence 1112477898887641 24455555664 345556654
No 188
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.81 E-value=2e-08 Score=98.44 Aligned_cols=70 Identities=27% Similarity=0.355 Sum_probs=49.9
Q ss_pred ccccchHHHHHHHHHHHhccccCccccccc--CCCCceEEEEcCCCCcHHHHHHHHHHhcCCeEEEEecchh
Q 016911 209 ESIKGLENAKRLLKEAVVMPIKYPKYFTGL--LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSV 278 (380)
Q Consensus 209 ~~l~Gl~~~k~~L~~~l~~~l~~~~~~~~~--~~~~~~vLL~GppGtGKT~la~ala~~l~~~~v~v~~s~l 278 (380)
.-|+|++++|+.+.-++.........-..+ --.|+++|+.||.|+|||.+|+.+|...+.||+.+.++.+
T Consensus 15 ~yIIGQ~~AKkaVAIALRNR~RR~qL~~~lr~EV~PKNILMIGpTGVGKTEIARRLAkl~~aPFiKVEATKf 86 (444)
T COG1220 15 RYIIGQDEAKKAVAIALRNRWRRMQLEEELRDEVTPKNILMIGPTGVGKTEIARRLAKLAGAPFIKVEATKF 86 (444)
T ss_pred hHhcCcHHHHHHHHHHHHHHHHHHhcCHHHhhccCccceEEECCCCCcHHHHHHHHHHHhCCCeEEEEeeee
Confidence 357999999998764443321111111111 1245899999999999999999999999999998877544
No 189
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=98.80 E-value=6.5e-08 Score=91.09 Aligned_cols=146 Identities=21% Similarity=0.277 Sum_probs=101.2
Q ss_pred CCccccccchHHHHHHHHHHHhccccCcccccccCCCCceEEEEcCCCCcHHHHHHHHHHhc---CCeEEEEecchhhhh
Q 016911 205 DVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSK 281 (380)
Q Consensus 205 ~~~~~~l~Gl~~~k~~L~~~l~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~l---~~~~v~v~~s~l~~~ 281 (380)
.+.+.+|+|.+.+++.|.+....... ..|..++||||..|||||+|+||+.+++ +..+++|+..++..
T Consensus 56 ~i~L~~l~Gvd~qk~~L~~NT~~F~~--------G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~glrLVEV~k~dl~~- 126 (287)
T COG2607 56 PIDLADLVGVDRQKEALVRNTEQFAE--------GLPANNVLLWGARGTGKSSLVKALLNEYADEGLRLVEVDKEDLAT- 126 (287)
T ss_pred CcCHHHHhCchHHHHHHHHHHHHHHc--------CCcccceEEecCCCCChHHHHHHHHHHHHhcCCeEEEEcHHHHhh-
Confidence 35689999999999999876644332 3567899999999999999999999888 66789999887743
Q ss_pred hccchHHHHHHHHHHHHh-cCCeEEEEcCcchhhhhccccchhhHHHHHHHHHHHHHhcC-CccCCCcEEEEEEeCCCCC
Q 016911 282 WRGDSEKLIKVLFELARH-HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDG-LTQSDELVFVLAATNLPWE 359 (380)
Q Consensus 282 ~~ge~e~~l~~lf~~A~~-~~p~ILfIDEiD~l~~~~~~~~~~~~~~~~i~~~Ll~~ldg-l~~~~~~VlVIatTN~~~~ 359 (380)
+-.+++..+. ..+-|||+|++--= .... ....|-..++| +...+.+|+|.||+|+...
T Consensus 127 --------Lp~l~~~Lr~~~~kFIlFcDDLSFe--------~gd~----~yK~LKs~LeG~ve~rP~NVl~YATSNRRHL 186 (287)
T COG2607 127 --------LPDLVELLRARPEKFILFCDDLSFE--------EGDD----AYKALKSALEGGVEGRPANVLFYATSNRRHL 186 (287)
T ss_pred --------HHHHHHHHhcCCceEEEEecCCCCC--------CCch----HHHHHHHHhcCCcccCCCeEEEEEecCCccc
Confidence 2223333332 22469999997321 1111 12234444554 4777889999999999876
Q ss_pred chHH----------------------HHhcccceeEecCCCC
Q 016911 360 LDAA----------------------MLRRLEKRVSFSLIAL 379 (380)
Q Consensus 360 Ld~a----------------------LlrRF~~~I~~plPd~ 379 (380)
+++. +.+||.--+.|+.+++
T Consensus 187 l~e~~~dn~~~~~eih~~eaveEKlSlSDRFGLwL~F~~~~Q 228 (287)
T COG2607 187 LPEDMKDNEGSTGEIHPSEAVEEKLSLSDRFGLWLSFYPCDQ 228 (287)
T ss_pred ccHhhhhCCCcccccChhHHHHHhhchhhhcceeecccCCCH
Confidence 5422 3347877777777764
No 190
>PRK07952 DNA replication protein DnaC; Validated
Probab=98.79 E-value=9.2e-08 Score=91.21 Aligned_cols=121 Identities=20% Similarity=0.247 Sum_probs=74.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhc---CCeEEEEecchhhhhhccch---HHHHHHHHHHHHhcCCeEEEEcCcchhhhh
Q 016911 243 KGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKWRGDS---EKLIKVLFELARHHAPSTIFLDEIDAIISQ 316 (380)
Q Consensus 243 ~~vLL~GppGtGKT~la~ala~~l---~~~~v~v~~s~l~~~~~ge~---e~~l~~lf~~A~~~~p~ILfIDEiD~l~~~ 316 (380)
.+++|+|+||||||+|+.++|..+ +..++.++..++........ ......++.... ..++|+|||++....
T Consensus 100 ~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~l~~~l~~~~~~~~~~~~~~l~~l~--~~dlLvIDDig~~~~- 176 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMSAMKDTFSNSETSEEQLLNDLS--NVDLLVIDEIGVQTE- 176 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHHHHHHHHHHhhccccHHHHHHHhc--cCCEEEEeCCCCCCC-
Confidence 589999999999999999999988 67888888888875443211 111223333333 367999999987531
Q ss_pred ccccchhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCCCCC-----chHHHHhccc----ceeEecCCC
Q 016911 317 RGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWE-----LDAAMLRRLE----KRVSFSLIA 378 (380)
Q Consensus 317 ~~~~~~~~~~~~~i~~~Ll~~ldgl~~~~~~VlVIatTN~~~~-----Ld~aLlrRF~----~~I~~plPd 378 (380)
.+....++..+++.- . .....+|.|||.... ++..+.+|+. ..+.|.=+|
T Consensus 177 -------s~~~~~~l~~Ii~~R---y--~~~~~tiitSNl~~~~l~~~~g~ri~sRl~~~~~~~i~f~~~s 235 (244)
T PRK07952 177 -------SRYEKVIINQIVDRR---S--SSKRPTGMLTNSNMEEMTKLLGERVMDRMRLGNSLWVIFNWDS 235 (244)
T ss_pred -------CHHHHHHHHHHHHHH---H--hCCCCEEEeCCCCHHHHHHHhChHHHHHHHHCCceEEEeeCCc
Confidence 122233444444332 1 112236779997642 5566777772 245554333
No 191
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=98.78 E-value=2e-08 Score=107.79 Aligned_cols=148 Identities=20% Similarity=0.252 Sum_probs=91.2
Q ss_pred CCccccccchHHHHHHHHHHHhccccCcccccccCCCCceEEEEcCCCCcHHHHHHHHHHhc---CCeEEEEecchhhhh
Q 016911 205 DVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSK 281 (380)
Q Consensus 205 ~~~~~~l~Gl~~~k~~L~~~l~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~l---~~~~v~v~~s~l~~~ 281 (380)
...|++++|.+...+.+.+.+... ......|||+|++||||+++|++++... +.+|+.++|..+...
T Consensus 321 ~~~~~~l~g~s~~~~~~~~~~~~~----------a~~~~pvli~Ge~GtGK~~~A~~ih~~s~r~~~pfv~vnc~~~~~~ 390 (638)
T PRK11388 321 SHTFDHMPQDSPQMRRLIHFGRQA----------AKSSFPVLLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQLYPDE 390 (638)
T ss_pred cccccceEECCHHHHHHHHHHHHH----------hCcCCCEEEECCCCcCHHHHHHHHHHhCCccCCCeEEEECCCCChH
Confidence 346889999888877777655432 2344679999999999999999999876 479999999876321
Q ss_pred -----hccch----HHHHHHHHHHHHhcCCeEEEEcCcchhhhhccccchhhHHHHHHHHHHHHHhcCCc--------cC
Q 016911 282 -----WRGDS----EKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT--------QS 344 (380)
Q Consensus 282 -----~~ge~----e~~l~~lf~~A~~~~p~ILfIDEiD~l~~~~~~~~~~~~~~~~i~~~Ll~~ldgl~--------~~ 344 (380)
..|.. .......|+.| .+++||||||+.+... .+..|+..++.-. ..
T Consensus 391 ~~~~elfg~~~~~~~~~~~g~~~~a---~~GtL~ldei~~l~~~-------------~Q~~Ll~~l~~~~~~~~~~~~~~ 454 (638)
T PRK11388 391 ALAEEFLGSDRTDSENGRLSKFELA---HGGTLFLEKVEYLSPE-------------LQSALLQVLKTGVITRLDSRRLI 454 (638)
T ss_pred HHHHHhcCCCCcCccCCCCCceeEC---CCCEEEEcChhhCCHH-------------HHHHHHHHHhcCcEEeCCCCceE
Confidence 22211 00000112222 3679999999998653 2233444443211 11
Q ss_pred CCcEEEEEEeCCCC-------CchHHHHhcccceeEecCCCC
Q 016911 345 DELVFVLAATNLPW-------ELDAAMLRRLEKRVSFSLIAL 379 (380)
Q Consensus 345 ~~~VlVIatTN~~~-------~Ld~aLlrRF~~~I~~plPd~ 379 (380)
.-++.+|+||+..- .+.+.|..|+. .+.+.+|.+
T Consensus 455 ~~~~riI~~t~~~l~~~~~~~~f~~dL~~~l~-~~~i~lPpL 495 (638)
T PRK11388 455 PVDVRVIATTTADLAMLVEQNRFSRQLYYALH-AFEITIPPL 495 (638)
T ss_pred EeeEEEEEeccCCHHHHHhcCCChHHHhhhhc-eeEEeCCCh
Confidence 12477899998731 23344444552 456666654
No 192
>PRK06620 hypothetical protein; Validated
Probab=98.77 E-value=3.4e-08 Score=92.28 Aligned_cols=100 Identities=13% Similarity=0.227 Sum_probs=61.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhcCCeEEEEecchhhhhhccchHHHHHHHHHHHHhcCCeEEEEcCcchhhhhccccch
Q 016911 243 KGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARS 322 (380)
Q Consensus 243 ~~vLL~GppGtGKT~la~ala~~l~~~~v~v~~s~l~~~~~ge~e~~l~~lf~~A~~~~p~ILfIDEiD~l~~~~~~~~~ 322 (380)
..++||||||+|||+|++++++..+..++. .... .+ ..+ . ..++|+|||++.+.
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~--~~~~-------~~----~~~---~--~~d~lliDdi~~~~-------- 98 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSNAYIIK--DIFF-------NE----EIL---E--KYNAFIIEDIENWQ-------- 98 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccCCEEcc--hhhh-------ch----hHH---h--cCCEEEEeccccch--------
Confidence 679999999999999999999988753322 1110 00 111 1 23699999998541
Q ss_pred hhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCCCCC--chHHHHhcccce--eEecCCC
Q 016911 323 EHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWE--LDAAMLRRLEKR--VSFSLIA 378 (380)
Q Consensus 323 ~~~~~~~i~~~Ll~~ldgl~~~~~~VlVIatTN~~~~--Ld~aLlrRF~~~--I~~plPd 378 (380)
...+-.+++.+ .... ..++|+++..|.. + +++++|+... +.+..|+
T Consensus 99 -----~~~lf~l~N~~---~e~g-~~ilits~~~p~~l~l-~~L~SRl~~gl~~~l~~pd 148 (214)
T PRK06620 99 -----EPALLHIFNII---NEKQ-KYLLLTSSDKSRNFTL-PDLSSRIKSVLSILLNSPD 148 (214)
T ss_pred -----HHHHHHHHHHH---HhcC-CEEEEEcCCCccccch-HHHHHHHhCCceEeeCCCC
Confidence 01122233333 3333 3556666655554 6 8899999644 6666665
No 193
>PRK06526 transposase; Provisional
Probab=98.76 E-value=1.5e-08 Score=97.12 Aligned_cols=73 Identities=21% Similarity=0.303 Sum_probs=48.5
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHhc---CCeEEEEecchhhhhhccc-hHHHHHHHHHHHHhcCCeEEEEcCcchhh
Q 016911 240 SPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKWRGD-SEKLIKVLFELARHHAPSTIFLDEIDAII 314 (380)
Q Consensus 240 ~~~~~vLL~GppGtGKT~la~ala~~l---~~~~v~v~~s~l~~~~~ge-~e~~l~~lf~~A~~~~p~ILfIDEiD~l~ 314 (380)
....+++|+||||||||+||.+++.++ +..+..+++.+++...... ........+.. ...+++|+|||++.+.
T Consensus 96 ~~~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~~l~~~~~~~~~~~~l~~--l~~~dlLIIDD~g~~~ 172 (254)
T PRK06526 96 TGKENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVARLAAAHHAGRLQAELVK--LGRYPLLIVDEVGYIP 172 (254)
T ss_pred hcCceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHHHHHHHHhcCcHHHHHHH--hccCCEEEEcccccCC
Confidence 445789999999999999999998876 6666667776665543211 01111122222 2336799999998764
No 194
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.76 E-value=1.1e-07 Score=95.84 Aligned_cols=147 Identities=24% Similarity=0.344 Sum_probs=94.9
Q ss_pred ccccchHHHHHHHHHHHhccccCcccccccCCCCceEEEEcCCCCcHHHHHHHHHHhcCCe-----EEEEecchhhhhhc
Q 016911 209 ESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT-----FFNISASSVVSKWR 283 (380)
Q Consensus 209 ~~l~Gl~~~k~~L~~~l~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~l~~~-----~v~v~~s~l~~~~~ 283 (380)
+.+.+.++.+.++...+...+.. ..+.+++++|+||||||.+++.+++++..+ ++++||....+.+.
T Consensus 17 ~~l~~Re~ei~~l~~~l~~~~~~--------~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~ 88 (366)
T COG1474 17 EELPHREEEINQLASFLAPALRG--------ERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQ 88 (366)
T ss_pred ccccccHHHHHHHHHHHHHHhcC--------CCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHH
Confidence 45888999998888775443321 233569999999999999999999998443 89999965533211
Q ss_pred ---------------cch-HHHHHHHHHHHHh-cCCeEEEEcCcchhhhhccccchhhHHHHHHHHHHHHHhcCCccCCC
Q 016911 284 ---------------GDS-EKLIKVLFELARH-HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDE 346 (380)
Q Consensus 284 ---------------ge~-e~~l~~lf~~A~~-~~p~ILfIDEiD~l~~~~~~~~~~~~~~~~i~~~Ll~~ldgl~~~~~ 346 (380)
|.+ ......+++.... ....||+|||+|.+....+ .++-.|+... .....
T Consensus 89 i~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~----------~~LY~L~r~~---~~~~~ 155 (366)
T COG1474 89 VLSKILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDG----------EVLYSLLRAP---GENKV 155 (366)
T ss_pred HHHHHHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccc----------hHHHHHHhhc---cccce
Confidence 222 2222333333322 3456999999999976432 2333343333 22245
Q ss_pred cEEEEEEeCCCC---CchHHHHhcccc-eeEecC
Q 016911 347 LVFVLAATNLPW---ELDAAMLRRLEK-RVSFSL 376 (380)
Q Consensus 347 ~VlVIatTN~~~---~Ld~aLlrRF~~-~I~~pl 376 (380)
.+.+|+.+|..+ .+|+-+.++|.. .|.||.
T Consensus 156 ~v~vi~i~n~~~~~~~ld~rv~s~l~~~~I~F~p 189 (366)
T COG1474 156 KVSIIAVSNDDKFLDYLDPRVKSSLGPSEIVFPP 189 (366)
T ss_pred eEEEEEEeccHHHHHHhhhhhhhccCcceeeeCC
Confidence 688999999875 488899998743 344443
No 195
>smart00350 MCM minichromosome maintenance proteins.
Probab=98.75 E-value=2e-08 Score=105.25 Aligned_cols=153 Identities=24% Similarity=0.255 Sum_probs=85.6
Q ss_pred ccccchHHHHHHHHHHHhccccCcccccc-cCCCCceEEEEcCCCCcHHHHHHHHHHhcCCeEEEE----ecchhhhhhc
Q 016911 209 ESIKGLENAKRLLKEAVVMPIKYPKYFTG-LLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNI----SASSVVSKWR 283 (380)
Q Consensus 209 ~~l~Gl~~~k~~L~~~l~~~l~~~~~~~~-~~~~~~~vLL~GppGtGKT~la~ala~~l~~~~v~v----~~s~l~~~~~ 283 (380)
..+.|.+.++..+.-.+..-.. +..-.+ .+....++||+|+||+|||++|+++++.+....+.. ++..+.....
T Consensus 203 p~i~G~~~~k~~l~l~l~gg~~-~~~~~~~~~r~~~~vLL~G~pGtGKs~lar~l~~~~~r~~~~~~~~~~~~~l~~~~~ 281 (509)
T smart00350 203 PSIYGHEDIKKAILLLLFGGVH-KNLPDGMKIRGDINILLLGDPGTAKSQLLKYVEKTAPRAVYTTGKGSSAVGLTAAVT 281 (509)
T ss_pred ccccCcHHHHHHHHHHHhCCCc-cccCCCccccccceEEEeCCCChhHHHHHHHHHHHcCcceEcCCCCCCcCCccccce
Confidence 4678888887776644322110 000011 133446899999999999999999999885433322 2222221111
Q ss_pred cc---hHHHH-HHHHHHHHhcCCeEEEEcCcchhhhhccccchhhHHHHHHHHHHHHHhcC---------C-ccCCCcEE
Q 016911 284 GD---SEKLI-KVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDG---------L-TQSDELVF 349 (380)
Q Consensus 284 ge---~e~~l-~~lf~~A~~~~p~ILfIDEiD~l~~~~~~~~~~~~~~~~i~~~Ll~~ldg---------l-~~~~~~Vl 349 (380)
.. .+..+ ...+.. ...++++|||++.+... ....|+..|+. . ......+.
T Consensus 282 ~~~~~g~~~~~~G~l~~---A~~Gil~iDEi~~l~~~-------------~q~~L~e~me~~~i~i~k~G~~~~l~~~~~ 345 (509)
T smart00350 282 RDPETREFTLEGGALVL---ADNGVCCIDEFDKMDDS-------------DRTAIHEAMEQQTISIAKAGITTTLNARCS 345 (509)
T ss_pred EccCcceEEecCccEEe---cCCCEEEEechhhCCHH-------------HHHHHHHHHhcCEEEEEeCCEEEEecCCcE
Confidence 11 00000 001111 23579999999998542 22334444422 1 11224578
Q ss_pred EEEEeCCCC-------------CchHHHHhcccceeEe-cCCC
Q 016911 350 VLAATNLPW-------------ELDAAMLRRLEKRVSF-SLIA 378 (380)
Q Consensus 350 VIatTN~~~-------------~Ld~aLlrRF~~~I~~-plPd 378 (380)
||||+|..+ .+++++++||+..+.+ +.|+
T Consensus 346 viAa~NP~~g~y~~~~~~~~n~~l~~~lLsRFdLi~~~~d~~~ 388 (509)
T smart00350 346 VLAAANPIGGRYDPKLTPEENIDLPAPILSRFDLLFVVLDEVD 388 (509)
T ss_pred EEEEeCCCCcccCCCcChhhccCCChHHhCceeeEEEecCCCC
Confidence 999999763 4999999999865443 3443
No 196
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=98.73 E-value=1.3e-07 Score=93.68 Aligned_cols=117 Identities=13% Similarity=0.168 Sum_probs=79.0
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHhcCCe------------------------EEEEecchhhhhhccchHHHHHHHHHH
Q 016911 241 PWKGILLFGPPGTGKTMLAKAVATECKTT------------------------FFNISASSVVSKWRGDSEKLIKVLFEL 296 (380)
Q Consensus 241 ~~~~vLL~GppGtGKT~la~ala~~l~~~------------------------~v~v~~s~l~~~~~ge~e~~l~~lf~~ 296 (380)
-+..+||+||+|+||+++|+++|+.+... ++.+...+ +.. -.-..++.+.+.
T Consensus 23 l~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~--~~~--I~id~iR~l~~~ 98 (325)
T PRK06871 23 GHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEPID--NKD--IGVDQVREINEK 98 (325)
T ss_pred cceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEcccc--CCC--CCHHHHHHHHHH
Confidence 34689999999999999999999987321 12221100 011 122334443333
Q ss_pred H----HhcCCeEEEEcCcchhhhhccccchhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCCCCCchHHHHhccccee
Q 016911 297 A----RHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRV 372 (380)
Q Consensus 297 A----~~~~p~ILfIDEiD~l~~~~~~~~~~~~~~~~i~~~Ll~~ldgl~~~~~~VlVIatTN~~~~Ld~aLlrRF~~~I 372 (380)
+ ......|++||++|.+.. ...+.|++.++ ..+..+++|.+|+.++.+.|+++||+. .+
T Consensus 99 ~~~~~~~g~~KV~iI~~a~~m~~-------------~AaNaLLKtLE---EPp~~~~fiL~t~~~~~llpTI~SRC~-~~ 161 (325)
T PRK06871 99 VSQHAQQGGNKVVYIQGAERLTE-------------AAANALLKTLE---EPRPNTYFLLQADLSAALLPTIYSRCQ-TW 161 (325)
T ss_pred HhhccccCCceEEEEechhhhCH-------------HHHHHHHHHhc---CCCCCeEEEEEECChHhCchHHHhhce-EE
Confidence 3 233456999999999843 34567888884 466678889999999999999999985 46
Q ss_pred EecCCC
Q 016911 373 SFSLIA 378 (380)
Q Consensus 373 ~~plPd 378 (380)
.|+.|+
T Consensus 162 ~~~~~~ 167 (325)
T PRK06871 162 LIHPPE 167 (325)
T ss_pred eCCCCC
Confidence 677664
No 197
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=98.72 E-value=1.4e-07 Score=94.34 Aligned_cols=62 Identities=19% Similarity=0.306 Sum_probs=48.3
Q ss_pred cc-cccchHHHHHHHHHHHhccccCcccccccCCCCceEEEEcCCCCcHHHHHHHHHHhcCC-------eEEEEec
Q 016911 208 WE-SIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKT-------TFFNISA 275 (380)
Q Consensus 208 ~~-~l~Gl~~~k~~L~~~l~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~l~~-------~~v~v~~ 275 (380)
|+ ++.|+++++.++.+.+..... +.....+.++|+||||+||||+|+++++.++. +++.+..
T Consensus 49 F~~~~~G~~~~i~~lv~~l~~~a~------g~~~~r~il~L~GPPGsGKStla~~La~~l~~ys~t~eG~~Y~~~~ 118 (361)
T smart00763 49 FDHDFFGMEEAIERFVNYFKSAAQ------GLEERKQILYLLGPVGGGKSSLVECLKRGLEEYSKTPEGRRYTFKW 118 (361)
T ss_pred cchhccCcHHHHHHHHHHHHHHHh------cCCCCCcEEEEECCCCCCHHHHHHHHHHHHhhhcccccCceEEEEe
Confidence 55 899999999888876644321 11234477899999999999999999999965 8888776
No 198
>PRK09183 transposase/IS protein; Provisional
Probab=98.69 E-value=6.5e-08 Score=92.96 Aligned_cols=74 Identities=26% Similarity=0.334 Sum_probs=50.3
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHhc---CCeEEEEecchhhhhhccc-hHHHHHHHHHHHHhcCCeEEEEcCcchhh
Q 016911 240 SPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKWRGD-SEKLIKVLFELARHHAPSTIFLDEIDAII 314 (380)
Q Consensus 240 ~~~~~vLL~GppGtGKT~la~ala~~l---~~~~v~v~~s~l~~~~~ge-~e~~l~~lf~~A~~~~p~ILfIDEiD~l~ 314 (380)
..+.+++|+||||||||+|+.+++... +..+..+++.++...+... ....+...+... ...+++++|||++...
T Consensus 100 ~~~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~~~l~~a~~~~~~~~~~~~~-~~~~dlLiiDdlg~~~ 177 (259)
T PRK09183 100 ERNENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLLQLSTAQRQGRYKTTLQRG-VMAPRLLIIDEIGYLP 177 (259)
T ss_pred hcCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHHHHHHHHHHCCcHHHHHHHH-hcCCCEEEEcccccCC
Confidence 456789999999999999999997764 6677777877776443211 111223334332 2346799999998753
No 199
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=98.69 E-value=1e-08 Score=104.55 Aligned_cols=47 Identities=45% Similarity=0.647 Sum_probs=41.1
Q ss_pred CccccccchHHHHHHHHHHHhccccCcccccccCCCCceEEEEcCCCCcHHHHHHHHHHhc
Q 016911 206 VKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC 266 (380)
Q Consensus 206 ~~~~~l~Gl~~~k~~L~~~l~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~l 266 (380)
..|.|++|++.+|+.+.-.. ..+.++|++||||||||++|+-+...+
T Consensus 176 ~D~~DV~GQ~~AKrAleiAA--------------AGgHnLl~~GpPGtGKTmla~Rl~~lL 222 (490)
T COG0606 176 PDFKDVKGQEQAKRALEIAA--------------AGGHNLLLVGPPGTGKTMLASRLPGLL 222 (490)
T ss_pred cchhhhcCcHHHHHHHHHHH--------------hcCCcEEEecCCCCchHHhhhhhcccC
Confidence 46889999999999988654 456899999999999999999998776
No 200
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=98.69 E-value=9.8e-09 Score=93.28 Aligned_cols=72 Identities=28% Similarity=0.464 Sum_probs=48.3
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHhc---CCeEEEEecchhhhhhccch-HHHHHHHHHHHHhcCCeEEEEcCcchh
Q 016911 240 SPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKWRGDS-EKLIKVLFELARHHAPSTIFLDEIDAI 313 (380)
Q Consensus 240 ~~~~~vLL~GppGtGKT~la~ala~~l---~~~~v~v~~s~l~~~~~ge~-e~~l~~lf~~A~~~~p~ILfIDEiD~l 313 (380)
..+.+++|+||||+|||+||.+++.++ +.++..++.++++....... .......+.... ...+|+|||+...
T Consensus 45 ~~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~~~~~~~~~~~~~~~l~--~~dlLilDDlG~~ 120 (178)
T PF01695_consen 45 ENGENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELKQSRSDGSYEELLKRLK--RVDLLILDDLGYE 120 (178)
T ss_dssp SC--EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHCCHCCTTHCHHHHHHH--TSSCEEEETCTSS
T ss_pred ccCeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceeccccccccccchhhhcCccc--cccEeccccccee
Confidence 456899999999999999999999877 77888899988876644221 111122233333 2579999999754
No 201
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=98.68 E-value=9.6e-08 Score=95.27 Aligned_cols=122 Identities=16% Similarity=0.193 Sum_probs=80.7
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHhcCCe-------------------------EEEEecchhh---------------
Q 016911 240 SPWKGILLFGPPGTGKTMLAKAVATECKTT-------------------------FFNISASSVV--------------- 279 (380)
Q Consensus 240 ~~~~~vLL~GppGtGKT~la~ala~~l~~~-------------------------~v~v~~s~l~--------------- 279 (380)
+.+..+||+||+|+||+++|+.+|+.+... ++.+......
T Consensus 19 rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~~~~~~~~Cg~C~~C~~~~~~~HPD~~~i~p~~~~~~~~~~~~~~~~~~~ 98 (342)
T PRK06964 19 RLPHALLLHGQAGIGKLDFAQHLAQGLLCETPQPDGEPCGTCAACNWFAQGNHPDYRIVRPEALAAEAPGAADEAKEADA 98 (342)
T ss_pred CcceEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccccccccccccchh
Confidence 445789999999999999999999887331 1112111000
Q ss_pred ---hh----h-ccchHHHHHHHHHHHH----hcCCeEEEEcCcchhhhhccccchhhHHHHHHHHHHHHHhcCCccCCCc
Q 016911 280 ---SK----W-RGDSEKLIKVLFELAR----HHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDEL 347 (380)
Q Consensus 280 ---~~----~-~ge~e~~l~~lf~~A~----~~~p~ILfIDEiD~l~~~~~~~~~~~~~~~~i~~~Ll~~ldgl~~~~~~ 347 (380)
+. . ..-.-..++.+...+. .....|++||++|.+-. ...+.||+.++ .....
T Consensus 99 ~~~~~k~~~~~~~I~idqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~-------------~AaNaLLKtLE---EPp~~ 162 (342)
T PRK06964 99 DEGGKKTKAPSKEIKIEQVRALLDFCGVGTHRGGARVVVLYPAEALNV-------------AAANALLKTLE---EPPPG 162 (342)
T ss_pred hcccccccccccccCHHHHHHHHHHhccCCccCCceEEEEechhhcCH-------------HHHHHHHHHhc---CCCcC
Confidence 00 0 0011233444444332 22345999999998843 34567888885 45666
Q ss_pred EEEEEEeCCCCCchHHHHhcccceeEecCCC
Q 016911 348 VFVLAATNLPWELDAAMLRRLEKRVSFSLIA 378 (380)
Q Consensus 348 VlVIatTN~~~~Ld~aLlrRF~~~I~~plPd 378 (380)
+++|.+|+.++.|.|+++||+ ..+.|+.|+
T Consensus 163 t~fiL~t~~~~~LLpTI~SRc-q~i~~~~~~ 192 (342)
T PRK06964 163 TVFLLVSARIDRLLPTILSRC-RQFPMTVPA 192 (342)
T ss_pred cEEEEEECChhhCcHHHHhcC-EEEEecCCC
Confidence 889999999999999999999 468888776
No 202
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.68 E-value=1.4e-07 Score=99.96 Aligned_cols=120 Identities=23% Similarity=0.290 Sum_probs=76.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhcCCeEEEEecchhhhhhccchHHHHHHHHH-HHH---hcCCeEEEEcCcchhhhhcc
Q 016911 243 KGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFE-LAR---HHAPSTIFLDEIDAIISQRG 318 (380)
Q Consensus 243 ~~vLL~GppGtGKT~la~ala~~l~~~~v~v~~s~l~~~~~ge~e~~l~~lf~-~A~---~~~p~ILfIDEiD~l~~~~~ 318 (380)
+.+||+||||-||||||+.+|.+.|+.++++|+++--+.- ....++..+.. ..- ...|..|+|||||--.
T Consensus 327 KilLL~GppGlGKTTLAHViAkqaGYsVvEINASDeRt~~--~v~~kI~~avq~~s~l~adsrP~CLViDEIDGa~---- 400 (877)
T KOG1969|consen 327 KILLLCGPPGLGKTTLAHVIAKQAGYSVVEINASDERTAP--MVKEKIENAVQNHSVLDADSRPVCLVIDEIDGAP---- 400 (877)
T ss_pred ceEEeecCCCCChhHHHHHHHHhcCceEEEecccccccHH--HHHHHHHHHHhhccccccCCCcceEEEecccCCc----
Confidence 6788999999999999999999999999999998753221 11222222111 111 1458899999998542
Q ss_pred ccchhhHHHHHHHHHHHHHhc-------CCcc---------CCC--cEEEEEEeCCCCCchHHHHh--cccceeEecCCC
Q 016911 319 EARSEHEASRRLKTELLIQMD-------GLTQ---------SDE--LVFVLAATNLPWELDAAMLR--RLEKRVSFSLIA 378 (380)
Q Consensus 319 ~~~~~~~~~~~i~~~Ll~~ld-------gl~~---------~~~--~VlVIatTN~~~~Ld~aLlr--RF~~~I~~plPd 378 (380)
+..+..++..+. |-.. ..+ .-.|||.+|..- -|+|+. -|.+++.|+.|.
T Consensus 401 ---------~~~Vdvilslv~a~~k~~~Gkq~~~~~~rkkkr~~~L~RPIICICNdLY--aPaLR~Lr~~A~ii~f~~p~ 469 (877)
T KOG1969|consen 401 ---------RAAVDVILSLVKATNKQATGKQAKKDKKRKKKRSKLLTRPIICICNDLY--APALRPLRPFAEIIAFVPPS 469 (877)
T ss_pred ---------HHHHHHHHHHHHhhcchhhcCcccchhhhhhhccccccCCEEEEecCcc--chhhhhcccceEEEEecCCC
Confidence 112222332222 1110 000 123789999844 477765 688999999887
Q ss_pred C
Q 016911 379 L 379 (380)
Q Consensus 379 ~ 379 (380)
.
T Consensus 470 ~ 470 (877)
T KOG1969|consen 470 Q 470 (877)
T ss_pred h
Confidence 4
No 203
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=98.68 E-value=1.2e-07 Score=94.49 Aligned_cols=122 Identities=16% Similarity=0.211 Sum_probs=80.6
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHhcCC------------------------eEEEEecchh-hhhhccchHHHHHHHH
Q 016911 240 SPWKGILLFGPPGTGKTMLAKAVATECKT------------------------TFFNISASSV-VSKWRGDSEKLIKVLF 294 (380)
Q Consensus 240 ~~~~~vLL~GppGtGKT~la~ala~~l~~------------------------~~v~v~~s~l-~~~~~ge~e~~l~~lf 294 (380)
+.+..+||+||+|+||+++|.++|..+-. .++.+....- ..-.+.+.....+.+.
T Consensus 22 rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~~I~idqiR~l~~~~~ 101 (334)
T PRK07993 22 RGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEKGKSSLGVDAVREVTEKLY 101 (334)
T ss_pred CcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccCCHHHHHHHHHHHh
Confidence 34568999999999999999999988722 1122211100 0001112222222233
Q ss_pred HHHHhcCCeEEEEcCcchhhhhccccchhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCCCCCchHHHHhcccceeEe
Q 016911 295 ELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRVSF 374 (380)
Q Consensus 295 ~~A~~~~p~ILfIDEiD~l~~~~~~~~~~~~~~~~i~~~Ll~~ldgl~~~~~~VlVIatTN~~~~Ld~aLlrRF~~~I~~ 374 (380)
.........|++||++|.+-. ...+.|++.++ +.+.++++|.+|+.++.+.|+++||+. .+.|
T Consensus 102 ~~~~~g~~kV~iI~~ae~m~~-------------~AaNaLLKtLE---EPp~~t~fiL~t~~~~~lLpTIrSRCq-~~~~ 164 (334)
T PRK07993 102 EHARLGGAKVVWLPDAALLTD-------------AAANALLKTLE---EPPENTWFFLACREPARLLATLRSRCR-LHYL 164 (334)
T ss_pred hccccCCceEEEEcchHhhCH-------------HHHHHHHHHhc---CCCCCeEEEEEECChhhChHHHHhccc-cccC
Confidence 233334456999999999832 35577888884 456678899999999999999999997 4688
Q ss_pred cCCC
Q 016911 375 SLIA 378 (380)
Q Consensus 375 plPd 378 (380)
+.|+
T Consensus 165 ~~~~ 168 (334)
T PRK07993 165 APPP 168 (334)
T ss_pred CCCC
Confidence 7775
No 204
>PRK06835 DNA replication protein DnaC; Validated
Probab=98.67 E-value=6.3e-08 Score=96.14 Aligned_cols=113 Identities=22% Similarity=0.334 Sum_probs=68.3
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhc---CCeEEEEecchhhhhhccc---hHHHHHHHHHHHHhcCCeEEEEcCcchhhh
Q 016911 242 WKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKWRGD---SEKLIKVLFELARHHAPSTIFLDEIDAIIS 315 (380)
Q Consensus 242 ~~~vLL~GppGtGKT~la~ala~~l---~~~~v~v~~s~l~~~~~ge---~e~~l~~lf~~A~~~~p~ILfIDEiD~l~~ 315 (380)
..+++|+||+|+|||+|+.++|+++ +..++.++..++....... ........+.... ..++|+|||++....
T Consensus 183 ~~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l~~~~~~~~~~~~~~~~~l~--~~DLLIIDDlG~e~~ 260 (329)
T PRK06835 183 NENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEILREIRFNNDKELEEVYDLLI--NCDLLIIDDLGTEKI 260 (329)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHHHHHHhccchhHHHHHHHhc--cCCEEEEeccCCCCC
Confidence 3789999999999999999999987 7788888888876654211 0011111122222 357999999977532
Q ss_pred hccccchhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCCCC-C----chHHHHhccc
Q 016911 316 QRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPW-E----LDAAMLRRLE 369 (380)
Q Consensus 316 ~~~~~~~~~~~~~~i~~~Ll~~ldgl~~~~~~VlVIatTN~~~-~----Ld~aLlrRF~ 369 (380)
. .. ....|+..++....... .+|.|||.+. . +++.+.+|+.
T Consensus 261 t--------~~---~~~~Lf~iin~R~~~~k--~tIiTSNl~~~el~~~~~eri~SRL~ 306 (329)
T PRK06835 261 T--------EF---SKSELFNLINKRLLRQK--KMIISTNLSLEELLKTYSERISSRLL 306 (329)
T ss_pred C--------HH---HHHHHHHHHHHHHHCCC--CEEEECCCCHHHHHHHHhHHHHHHHH
Confidence 1 11 12233333332222222 2567888753 2 4567778773
No 205
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=98.65 E-value=1.1e-07 Score=96.26 Aligned_cols=124 Identities=18% Similarity=0.312 Sum_probs=82.4
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHhc-----CCeEEEEecchhhhhhccchHHHHHHHHHHHHhcCCeEEEEcCcchhhh
Q 016911 241 PWKGILLFGPPGTGKTMLAKAVATEC-----KTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIIS 315 (380)
Q Consensus 241 ~~~~vLL~GppGtGKT~la~ala~~l-----~~~~v~v~~s~l~~~~~ge~e~~l~~lf~~A~~~~p~ILfIDEiD~l~~ 315 (380)
+...++||||+|+|||+|++|+++.. +..+++++...+...++......-..-|+.-. .-++++|||++.+.+
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se~f~~~~v~a~~~~~~~~Fk~~y--~~dlllIDDiq~l~g 189 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSEDFTNDFVKALRDNEMEKFKEKY--SLDLLLIDDIQFLAG 189 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccHHHHHHHHHHHHHhhhHHHHHHhh--ccCeeeechHhHhcC
Confidence 45779999999999999999999877 44688888888877666444333333455444 346999999999865
Q ss_pred hccccchhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCCCCC---chHHHHhcccceeE--ecCCC
Q 016911 316 QRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWE---LDAAMLRRLEKRVS--FSLIA 378 (380)
Q Consensus 316 ~~~~~~~~~~~~~~i~~~Ll~~ldgl~~~~~~VlVIatTN~~~~---Ld~aLlrRF~~~I~--~plPd 378 (380)
+. ++..++...+..+....+ -+|+.+...|.+ +.+.|.+||...+. +..|+
T Consensus 190 k~-----------~~qeefFh~FN~l~~~~k-qIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd 245 (408)
T COG0593 190 KE-----------RTQEEFFHTFNALLENGK-QIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPD 245 (408)
T ss_pred Ch-----------hHHHHHHHHHHHHHhcCC-EEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCC
Confidence 42 123445555554444444 334444445544 66899999976554 44554
No 206
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=98.64 E-value=2.3e-07 Score=91.71 Aligned_cols=121 Identities=21% Similarity=0.257 Sum_probs=77.7
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHhcCCe---------------------EEEEe--cchhhhh-hccchHHHHHHHHHH
Q 016911 241 PWKGILLFGPPGTGKTMLAKAVATECKTT---------------------FFNIS--ASSVVSK-WRGDSEKLIKVLFEL 296 (380)
Q Consensus 241 ~~~~vLL~GppGtGKT~la~ala~~l~~~---------------------~v~v~--~s~l~~~-~~ge~e~~l~~lf~~ 296 (380)
-+..+||+||+|+||+++|.++|+.+... ++.+. ...-..+ ...-.-..++.+.+.
T Consensus 25 l~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~~~p~~~~~k~~~~I~idqIR~l~~~ 104 (319)
T PRK08769 25 LGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVSFIPNRTGDKLRTEIVIEQVREISQK 104 (319)
T ss_pred cceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEecCCCcccccccccccHHHHHHHHHH
Confidence 34579999999999999999999877221 11111 0000000 000112334444443
Q ss_pred HHh----cCCeEEEEcCcchhhhhccccchhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCCCCCchHHHHhccccee
Q 016911 297 ARH----HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRV 372 (380)
Q Consensus 297 A~~----~~p~ILfIDEiD~l~~~~~~~~~~~~~~~~i~~~Ll~~ldgl~~~~~~VlVIatTN~~~~Ld~aLlrRF~~~I 372 (380)
+.. ....|++||++|.+.. ...+.|++.++ ....++++|.+|+.++.+.|+++||+. .+
T Consensus 105 ~~~~p~~g~~kV~iI~~ae~m~~-------------~AaNaLLKtLE---EPp~~~~fiL~~~~~~~lLpTIrSRCq-~i 167 (319)
T PRK08769 105 LALTPQYGIAQVVIVDPADAINR-------------AACNALLKTLE---EPSPGRYLWLISAQPARLPATIRSRCQ-RL 167 (319)
T ss_pred HhhCcccCCcEEEEeccHhhhCH-------------HHHHHHHHHhh---CCCCCCeEEEEECChhhCchHHHhhhe-Ee
Confidence 332 2346999999999832 34567888774 455567788899999999999999995 56
Q ss_pred EecCCC
Q 016911 373 SFSLIA 378 (380)
Q Consensus 373 ~~plPd 378 (380)
.|+.|+
T Consensus 168 ~~~~~~ 173 (319)
T PRK08769 168 EFKLPP 173 (319)
T ss_pred eCCCcC
Confidence 777775
No 207
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=98.63 E-value=1.1e-07 Score=91.26 Aligned_cols=72 Identities=26% Similarity=0.428 Sum_probs=52.2
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHhc---CCeEEEEecchhhhhhccchHH-HH-HHHHHHHHhcCCeEEEEcCcchhh
Q 016911 241 PWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKWRGDSEK-LI-KVLFELARHHAPSTIFLDEIDAII 314 (380)
Q Consensus 241 ~~~~vLL~GppGtGKT~la~ala~~l---~~~~v~v~~s~l~~~~~ge~e~-~l-~~lf~~A~~~~p~ILfIDEiD~l~ 314 (380)
.+.+++|+||||+|||+||-|+++++ +.++..++.++++......... .. ..+..... ..++|+|||+....
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~~~~~~~~~~~l~~~l~--~~dlLIiDDlG~~~ 180 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKAAFDEGRLEEKLLRELK--KVDLLIIDDIGYEP 180 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhcCchHHHHHHHhh--cCCEEEEecccCcc
Confidence 45799999999999999999999988 7889999999988765432221 11 11222122 24699999998763
No 208
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=98.62 E-value=4.8e-07 Score=89.50 Aligned_cols=119 Identities=15% Similarity=0.115 Sum_probs=80.1
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHhcCC-----------------------eEEEEecchhhhhhccchHHHHHHHHHH
Q 016911 240 SPWKGILLFGPPGTGKTMLAKAVATECKT-----------------------TFFNISASSVVSKWRGDSEKLIKVLFEL 296 (380)
Q Consensus 240 ~~~~~vLL~GppGtGKT~la~ala~~l~~-----------------------~~v~v~~s~l~~~~~ge~e~~l~~lf~~ 296 (380)
+.+..+||+||.|+||+++|+++|+.+.. .++.+.... .++. -.-..++.+-..
T Consensus 23 rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~-~~~~--I~vdqiR~l~~~ 99 (319)
T PRK06090 23 RIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVIKPEK-EGKS--ITVEQIRQCNRL 99 (319)
T ss_pred CcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecCc-CCCc--CCHHHHHHHHHH
Confidence 34468999999999999999999987721 122222210 0000 112333444333
Q ss_pred HH----hcCCeEEEEcCcchhhhhccccchhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCCCCCchHHHHhccccee
Q 016911 297 AR----HHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRV 372 (380)
Q Consensus 297 A~----~~~p~ILfIDEiD~l~~~~~~~~~~~~~~~~i~~~Ll~~ldgl~~~~~~VlVIatTN~~~~Ld~aLlrRF~~~I 372 (380)
+. .....|++||++|.+-. ...+.|++.++ +.+.++++|.+|+.++.+.|+++||+. .+
T Consensus 100 ~~~~~~~~~~kV~iI~~ae~m~~-------------~AaNaLLKtLE---EPp~~t~fiL~t~~~~~lLpTI~SRCq-~~ 162 (319)
T PRK06090 100 AQESSQLNGYRLFVIEPADAMNE-------------SASNALLKTLE---EPAPNCLFLLVTHNQKRLLPTIVSRCQ-QW 162 (319)
T ss_pred HhhCcccCCceEEEecchhhhCH-------------HHHHHHHHHhc---CCCCCeEEEEEECChhhChHHHHhcce-eE
Confidence 32 23346999999999832 34567888884 456668899999999999999999996 57
Q ss_pred EecCCC
Q 016911 373 SFSLIA 378 (380)
Q Consensus 373 ~~plPd 378 (380)
.|+.|+
T Consensus 163 ~~~~~~ 168 (319)
T PRK06090 163 VVTPPS 168 (319)
T ss_pred eCCCCC
Confidence 787776
No 209
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=98.60 E-value=1.3e-07 Score=103.53 Aligned_cols=148 Identities=18% Similarity=0.169 Sum_probs=84.5
Q ss_pred cccccchHHHHHHHHHHHhccccCccccc---------ccCCCCceEEEEcCCCCcHHHHHHHHHHhcC-------CeEE
Q 016911 208 WESIKGLENAKRLLKEAVVMPIKYPKYFT---------GLLSPWKGILLFGPPGTGKTMLAKAVATECK-------TTFF 271 (380)
Q Consensus 208 ~~~l~Gl~~~k~~L~~~l~~~l~~~~~~~---------~~~~~~~~vLL~GppGtGKT~la~ala~~l~-------~~~v 271 (380)
...|.|.+.+|+.+.-.+..-........ ..+....++||+|+||||||.+|+++++... .++.
T Consensus 449 aP~I~G~e~vK~ailL~L~gG~~k~~~~~~~~dg~~~~~~iRgdihVLLvGDPGTGKSqLAr~Ih~lspR~~ytsG~~~s 528 (915)
T PTZ00111 449 APSIKARNNVKIGLLCQLFSGNKNSSDFNKSPDACYKVDNFRGIINVLLCGDPGTAKSQLLHYTHLLSPRSIYTSGKSSS 528 (915)
T ss_pred CCeEECCHHHHHHHHHHHhcCCccccccccccccccccccccCCceEEEeCCCCccHHHHHHHHHHhCCccccCCCCCCc
Confidence 34788999988877644322111100000 1134456899999999999999999998653 3444
Q ss_pred EEecchhhhhhccc--hHHHH-HHHHHHHHhcCCeEEEEcCcchhhhhccccchhhHHHHHHHHHHHHHhcC--------
Q 016911 272 NISASSVVSKWRGD--SEKLI-KVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDG-------- 340 (380)
Q Consensus 272 ~v~~s~l~~~~~ge--~e~~l-~~lf~~A~~~~p~ILfIDEiD~l~~~~~~~~~~~~~~~~i~~~Ll~~ldg-------- 340 (380)
.+++..... +.+. .+..+ ...+. ....++++|||++.+... ....|+..|+.
T Consensus 529 ~vgLTa~~~-~~d~~tG~~~le~GaLv---lAdgGtL~IDEidkms~~-------------~Q~aLlEaMEqqtIsI~Ka 591 (915)
T PTZ00111 529 SVGLTASIK-FNESDNGRAMIQPGAVV---LANGGVCCIDELDKCHNE-------------SRLSLYEVMEQQTVTIAKA 591 (915)
T ss_pred cccccchhh-hcccccCcccccCCcEE---EcCCCeEEecchhhCCHH-------------HHHHHHHHHhCCEEEEecC
Confidence 444443321 0100 00000 00111 223579999999998543 12234444421
Q ss_pred -C-ccCCCcEEEEEEeCCCC-------------CchHHHHhccccee
Q 016911 341 -L-TQSDELVFVLAATNLPW-------------ELDAAMLRRLEKRV 372 (380)
Q Consensus 341 -l-~~~~~~VlVIatTN~~~-------------~Ld~aLlrRF~~~I 372 (380)
+ ..-...+.||||+|... .+++++++|||-+.
T Consensus 592 Gi~~tL~ar~rVIAAaNP~~gryd~~~s~~eni~Lp~~LLSRFDLIf 638 (915)
T PTZ00111 592 GIVATLKAETAILASCNPINSRYNKNKAVIENINISPSLFTRFDLIY 638 (915)
T ss_pred CcceecCCCeEEEEEcCCcccccCcccCcccccCCChHHhhhhcEEE
Confidence 1 11234588999999853 28899999997653
No 210
>PRK04132 replication factor C small subunit; Provisional
Probab=98.60 E-value=1.9e-07 Score=102.40 Aligned_cols=116 Identities=22% Similarity=0.213 Sum_probs=84.3
Q ss_pred CCCceEEEEc--CCCCcHHHHHHHHHHhc-----CCeEEEEecchhhhhhccchHHHHHHHHHHHHhc------CCeEEE
Q 016911 240 SPWKGILLFG--PPGTGKTMLAKAVATEC-----KTTFFNISASSVVSKWRGDSEKLIKVLFELARHH------APSTIF 306 (380)
Q Consensus 240 ~~~~~vLL~G--ppGtGKT~la~ala~~l-----~~~~v~v~~s~l~~~~~ge~e~~l~~lf~~A~~~------~p~ILf 306 (380)
-|+-+-+..| |++.||||+|+++|+++ +.+++++|+++..+. ..++.+...+... +..|++
T Consensus 562 ~~~~~~~~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd~rgi------d~IR~iIk~~a~~~~~~~~~~KVvI 635 (846)
T PRK04132 562 VPGYHNFIGGNLPTVLHNTTAALALARELFGENWRHNFLELNASDERGI------NVIREKVKEFARTKPIGGASFKIIF 635 (846)
T ss_pred cCchhhhhcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeCCCcccH------HHHHHHHHHHHhcCCcCCCCCEEEE
Confidence 4556667789 99999999999999998 568999999884221 2334333322211 236999
Q ss_pred EcCcchhhhhccccchhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCCCCCchHHHHhcccceeEecCCC
Q 016911 307 LDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRVSFSLIA 378 (380)
Q Consensus 307 IDEiD~l~~~~~~~~~~~~~~~~i~~~Ll~~ldgl~~~~~~VlVIatTN~~~~Ld~aLlrRF~~~I~~plPd 378 (380)
|||+|.+... .++.|+..|+ .....+.+|++||.++.+.+++++|+ ..+.|+.|+
T Consensus 636 IDEaD~Lt~~-------------AQnALLk~lE---ep~~~~~FILi~N~~~kIi~tIrSRC-~~i~F~~ls 690 (846)
T PRK04132 636 LDEADALTQD-------------AQQALRRTME---MFSSNVRFILSCNYSSKIIEPIQSRC-AIFRFRPLR 690 (846)
T ss_pred EECcccCCHH-------------HHHHHHHHhh---CCCCCeEEEEEeCChhhCchHHhhhc-eEEeCCCCC
Confidence 9999998432 3456777774 34456789999999999999999998 457777765
No 211
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=98.58 E-value=4.2e-07 Score=99.48 Aligned_cols=131 Identities=23% Similarity=0.274 Sum_probs=91.0
Q ss_pred ccccchHHHHHHHHHHHhccccCcccccccCCCCceEEEEcCCCCcHHHHHHHHHHhc---CCeEEEEecchhhh-----
Q 016911 209 ESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVS----- 280 (380)
Q Consensus 209 ~~l~Gl~~~k~~L~~~l~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~l---~~~~v~v~~s~l~~----- 280 (380)
..++|++++...+-+++.....-. .+. +|..-++|.||.|+|||-||+++|..+ ...++.++++++..
T Consensus 562 ~~V~gQ~eAv~aIa~AI~~sr~gl---~~~-~~~awflflGpdgvGKt~lAkaLA~~~Fgse~~~IriDmse~~evskli 637 (898)
T KOG1051|consen 562 ERVIGQDEAVAAIAAAIRRSRAGL---KDP-NPDAWFLFLGPDGVGKTELAKALAEYVFGSEENFIRLDMSEFQEVSKLI 637 (898)
T ss_pred hhccchHHHHHHHHHHHHhhhccc---CCC-CCCeEEEEECCCchhHHHHHHHHHHHHcCCccceEEechhhhhhhhhcc
Confidence 467888888888888775532211 111 467889999999999999999999988 45788999986332
Q ss_pred ----hhccchHHHHHHHHHHHHhcCCeEEEEcCcchhhhhccccchhhHHHHHHHHHHHHHhcCCccC--------CCcE
Q 016911 281 ----KWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQS--------DELV 348 (380)
Q Consensus 281 ----~~~ge~e~~l~~lf~~A~~~~p~ILfIDEiD~l~~~~~~~~~~~~~~~~i~~~Ll~~ldgl~~~--------~~~V 348 (380)
.|+|..+. ..+.+..+....+||+|||||+.-+ .+.+.|+..+|..... -+++
T Consensus 638 gsp~gyvG~e~g--g~LteavrrrP~sVVLfdeIEkAh~-------------~v~n~llq~lD~GrltDs~Gr~Vd~kN~ 702 (898)
T KOG1051|consen 638 GSPPGYVGKEEG--GQLTEAVKRRPYSVVLFEEIEKAHP-------------DVLNILLQLLDRGRLTDSHGREVDFKNA 702 (898)
T ss_pred CCCcccccchhH--HHHHHHHhcCCceEEEEechhhcCH-------------HHHHHHHHHHhcCccccCCCcEeeccce
Confidence 24444332 3567777788889999999987632 2445566666543222 2568
Q ss_pred EEEEEeCCCC
Q 016911 349 FVLAATNLPW 358 (380)
Q Consensus 349 lVIatTN~~~ 358 (380)
+||.|+|...
T Consensus 703 I~IMTsn~~~ 712 (898)
T KOG1051|consen 703 IFIMTSNVGS 712 (898)
T ss_pred EEEEecccch
Confidence 8999988743
No 212
>PRK06921 hypothetical protein; Provisional
Probab=98.57 E-value=3e-07 Score=88.77 Aligned_cols=68 Identities=24% Similarity=0.358 Sum_probs=45.7
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhc----CCeEEEEecchhhhhhccchHHHHHHHHHHHHhcCCeEEEEcCcch
Q 016911 242 WKGILLFGPPGTGKTMLAKAVATEC----KTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDA 312 (380)
Q Consensus 242 ~~~vLL~GppGtGKT~la~ala~~l----~~~~v~v~~s~l~~~~~ge~e~~l~~lf~~A~~~~p~ILfIDEiD~ 312 (380)
..+++|+||||+|||+|+.++|+++ +..+++++..++........ .......... ...++|+|||++.
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l~~~l~~~~-~~~~~~~~~~--~~~dlLiIDDl~~ 188 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGFGDLKDDF-DLLEAKLNRM--KKVEVLFIDDLFK 188 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHHHHHHHHHH-HHHHHHHHHh--cCCCEEEEecccc
Confidence 4789999999999999999999976 45677777766654432111 1111222222 2357999999943
No 213
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=98.56 E-value=2.7e-07 Score=98.70 Aligned_cols=53 Identities=36% Similarity=0.548 Sum_probs=44.8
Q ss_pred CCCCccccccchHHHHHHHHHHHhccccCcccccccCCCCceEEEEcCCCCcHHHHHHHHHHhcCCe
Q 016911 203 SPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT 269 (380)
Q Consensus 203 ~p~~~~~~l~Gl~~~k~~L~~~l~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~l~~~ 269 (380)
.|...+++++|++++++.++..+. .+.+++|+||||||||++++++++.++..
T Consensus 12 ~~~~~~~~viG~~~a~~~l~~a~~--------------~~~~~ll~G~pG~GKT~la~~la~~l~~~ 64 (608)
T TIGR00764 12 VPERLIDQVIGQEEAVEIIKKAAK--------------QKRNVLLIGEPGVGKSMLAKAMAELLPDE 64 (608)
T ss_pred cchhhHhhccCHHHHHHHHHHHHH--------------cCCCEEEECCCCCCHHHHHHHHHHHcCch
Confidence 456678999999999998887763 23589999999999999999999999654
No 214
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=98.55 E-value=2.5e-07 Score=98.61 Aligned_cols=122 Identities=20% Similarity=0.265 Sum_probs=77.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhcCC--eEEEEecchhhhhhccchH--HHHH-H--HHH--HHHhcCCeEEEEcCcchh
Q 016911 243 KGILLFGPPGTGKTMLAKAVATECKT--TFFNISASSVVSKWRGDSE--KLIK-V--LFE--LARHHAPSTIFLDEIDAI 313 (380)
Q Consensus 243 ~~vLL~GppGtGKT~la~ala~~l~~--~~v~v~~s~l~~~~~ge~e--~~l~-~--lf~--~A~~~~p~ILfIDEiD~l 313 (380)
.++||.|+||||||++|++++..++. +|+.+.+........|... ..+. . .+. .......++|||||++.+
T Consensus 17 g~vLl~G~~GtgKs~lar~l~~~~~~~~pfv~i~~~~t~d~L~G~idl~~~~~~g~~~~~~G~L~~A~~GvL~lDEi~rl 96 (589)
T TIGR02031 17 GGVAIRARAGTGKTALARALAEILPPIMPFVELPLGVTEDRLIGGIDVEESLAGGQRVTQPGLLDEAPRGVLYVDMANLL 96 (589)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhCCcCCCeEecCcccchhhcccchhhhhhhhcCcccCCCCCeeeCCCCcEeccchhhC
Confidence 58999999999999999999998854 5887775333233333321 0000 0 000 000122469999999988
Q ss_pred hhhccccchhhHHHHHHHHHHHHHhcCCc----------cCCCcEEEEEEeCCCC---CchHHHHhcccceeEecCC
Q 016911 314 ISQRGEARSEHEASRRLKTELLIQMDGLT----------QSDELVFVLAATNLPW---ELDAAMLRRLEKRVSFSLI 377 (380)
Q Consensus 314 ~~~~~~~~~~~~~~~~i~~~Ll~~ldgl~----------~~~~~VlVIatTN~~~---~Ld~aLlrRF~~~I~~plP 377 (380)
.+. +++.|+..|+.-. .....+.||+|+|..+ .+.+++++||...+.+..|
T Consensus 97 ~~~-------------~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np~e~~g~L~~~LldRf~l~v~~~~~ 160 (589)
T TIGR02031 97 DDG-------------LSNRLLQALDEGVVIVEREGISVVHPAKFALIATYDPAEGGGGLPDHLLDRLALHVSLEDV 160 (589)
T ss_pred CHH-------------HHHHHHHHHHcCCeEEEECCCceeecCceEEEEecCCccccCCCCHHHHHhccCeeecCCC
Confidence 543 3445555554211 1124578899999875 6999999999987666544
No 215
>PRK08939 primosomal protein DnaI; Reviewed
Probab=98.54 E-value=3.3e-07 Score=90.15 Aligned_cols=71 Identities=23% Similarity=0.352 Sum_probs=50.1
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHhc---CCeEEEEecchhhhhhccchH-HHHHHHHHHHHhcCCeEEEEcCcchh
Q 016911 241 PWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKWRGDSE-KLIKVLFELARHHAPSTIFLDEIDAI 313 (380)
Q Consensus 241 ~~~~vLL~GppGtGKT~la~ala~~l---~~~~v~v~~s~l~~~~~ge~e-~~l~~lf~~A~~~~p~ILfIDEiD~l 313 (380)
...+++|+||+|+|||+|+.|+|+++ +.++..++.++++........ ......+.... ..++|+|||++.-
T Consensus 155 ~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~~lk~~~~~~~~~~~l~~l~--~~dlLiIDDiG~e 229 (306)
T PRK08939 155 KVKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIRELKNSISDGSVKEKIDAVK--EAPVLMLDDIGAE 229 (306)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHHHHHHHHhcCcHHHHHHHhc--CCCEEEEecCCCc
Confidence 45799999999999999999999988 677888888877655432111 11222333322 3579999999764
No 216
>PF13173 AAA_14: AAA domain
Probab=98.51 E-value=4e-07 Score=77.75 Aligned_cols=69 Identities=32% Similarity=0.479 Sum_probs=47.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhcC--CeEEEEecchhhhhhccchHHHHHHHHHHHHhcCCeEEEEcCcchh
Q 016911 243 KGILLFGPPGTGKTMLAKAVATECK--TTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAI 313 (380)
Q Consensus 243 ~~vLL~GppGtGKT~la~ala~~l~--~~~v~v~~s~l~~~~~ge~e~~l~~lf~~A~~~~p~ILfIDEiD~l 313 (380)
+.++|+||.|+||||+++.+++.+. ..++.+++.+.........+ ....+.+. ....+.+|||||++.+
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~i~iDEiq~~ 73 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDRRLADPD-LLEYFLEL-IKPGKKYIFIDEIQYL 73 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHHHHhhhh-hHHHHHHh-hccCCcEEEEehhhhh
Confidence 5789999999999999999998876 77888888766442211111 12222222 2224679999999877
No 217
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=98.51 E-value=4.8e-07 Score=89.78 Aligned_cols=122 Identities=14% Similarity=0.142 Sum_probs=77.3
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHhcCC-------------------------eEEEEecchh---hhhh-ccchHHHH
Q 016911 240 SPWKGILLFGPPGTGKTMLAKAVATECKT-------------------------TFFNISASSV---VSKW-RGDSEKLI 290 (380)
Q Consensus 240 ~~~~~vLL~GppGtGKT~la~ala~~l~~-------------------------~~v~v~~s~l---~~~~-~ge~e~~l 290 (380)
+.+..+||+||+|+|||++|+.+|+.+.. .++.+++..- .++. ..-.-..+
T Consensus 19 r~~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~~~~~g~~~~~I~id~i 98 (325)
T PRK08699 19 RRPNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSDEPENGRKLLQIKIDAV 98 (325)
T ss_pred CcceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEecccccccccccCCCcCHHHH
Confidence 34567999999999999999999998732 1333332110 0000 00123344
Q ss_pred HHHHHHHHh----cCCeEEEEcCcchhhhhccccchhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCCCCCchHHHHh
Q 016911 291 KVLFELARH----HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLR 366 (380)
Q Consensus 291 ~~lf~~A~~----~~p~ILfIDEiD~l~~~~~~~~~~~~~~~~i~~~Ll~~ldgl~~~~~~VlVIatTN~~~~Ld~aLlr 366 (380)
+.+.+.+.. ....|++||+++.+-. ...+.++..++... ..+.+|.+|+.++.+.+.+.+
T Consensus 99 R~l~~~~~~~p~~~~~kV~iiEp~~~Ld~-------------~a~naLLk~LEep~---~~~~~Ilvth~~~~ll~ti~S 162 (325)
T PRK08699 99 REIIDNVYLTSVRGGLRVILIHPAESMNL-------------QAANSLLKVLEEPP---PQVVFLLVSHAADKVLPTIKS 162 (325)
T ss_pred HHHHHHHhhCcccCCceEEEEechhhCCH-------------HHHHHHHHHHHhCc---CCCEEEEEeCChHhChHHHHH
Confidence 555554442 3346999999998833 23455666665442 235577789888999999999
Q ss_pred cccceeEecCCC
Q 016911 367 RLEKRVSFSLIA 378 (380)
Q Consensus 367 RF~~~I~~plPd 378 (380)
|+. .+.|+.|+
T Consensus 163 Rc~-~~~~~~~~ 173 (325)
T PRK08699 163 RCR-KMVLPAPS 173 (325)
T ss_pred Hhh-hhcCCCCC
Confidence 985 46677665
No 218
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=98.51 E-value=1.3e-07 Score=96.84 Aligned_cols=145 Identities=21% Similarity=0.262 Sum_probs=87.2
Q ss_pred cccccchHHHHHHHHHHHhccccCcccccccCCCCceEEEEcCCCCcHHHHHHHHHHhc---CCeEEEEecchhhhhhc-
Q 016911 208 WESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKWR- 283 (380)
Q Consensus 208 ~~~l~Gl~~~k~~L~~~l~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~l---~~~~v~v~~s~l~~~~~- 283 (380)
+..++|.+...+.+...+.. .......++++|++||||+++|+++.... +.+|+.++|..+.....
T Consensus 138 ~~~lig~s~~~~~l~~~i~~----------~a~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~v~v~c~~~~~~~~~ 207 (445)
T TIGR02915 138 LRGLITSSPGMQKICRTIEK----------IAPSDITVLLLGESGTGKEVLARALHQLSDRKDKRFVAINCAAIPENLLE 207 (445)
T ss_pred ccceeecCHHHHHHHHHHHH----------HhCCCCCEEEECCCCcCHHHHHHHHHHhCCcCCCCeEEEECCCCChHHHH
Confidence 45677777766666654432 12344679999999999999999998876 56899999987643211
Q ss_pred ----cch-------HHHHHHHHHHHHhcCCeEEEEcCcchhhhhccccchhhHHHHHHHHHHHHHhcC--------CccC
Q 016911 284 ----GDS-------EKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDG--------LTQS 344 (380)
Q Consensus 284 ----ge~-------e~~l~~lf~~A~~~~p~ILfIDEiD~l~~~~~~~~~~~~~~~~i~~~Ll~~ldg--------l~~~ 344 (380)
|.. .......+. ...+++|||||++.+... .+..|+..++. ....
T Consensus 208 ~~lfg~~~~~~~~~~~~~~g~~~---~a~~gtl~l~~i~~l~~~-------------~q~~l~~~l~~~~~~~~~~~~~~ 271 (445)
T TIGR02915 208 SELFGYEKGAFTGAVKQTLGKIE---YAHGGTLFLDEIGDLPLN-------------LQAKLLRFLQERVIERLGGREEI 271 (445)
T ss_pred HHhcCCCCCCcCCCccCCCCcee---ECCCCEEEEechhhCCHH-------------HHHHHHHHHhhCeEEeCCCCcee
Confidence 100 000001111 233679999999998653 22334443321 1112
Q ss_pred CCcEEEEEEeCCC-------CCchHHHHhcccceeEecCCCC
Q 016911 345 DELVFVLAATNLP-------WELDAAMLRRLEKRVSFSLIAL 379 (380)
Q Consensus 345 ~~~VlVIatTN~~-------~~Ld~aLlrRF~~~I~~plPd~ 379 (380)
..++.+|+||+.. ..+.+.|..|+. .+.+.+|.+
T Consensus 272 ~~~~rii~~~~~~l~~~~~~~~~~~~L~~~l~-~~~i~lPpL 312 (445)
T TIGR02915 272 PVDVRIVCATNQDLKRMIAEGTFREDLFYRIA-EISITIPPL 312 (445)
T ss_pred eeceEEEEecCCCHHHHHHcCCccHHHHHHhc-cceecCCCc
Confidence 2357889998874 234555666663 356666654
No 219
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=98.51 E-value=6.1e-07 Score=90.50 Aligned_cols=148 Identities=24% Similarity=0.301 Sum_probs=92.4
Q ss_pred CCccccccchHHHHHHHHHHHhccccCcccccccCCCCceEEEEcCCCCcHHHHHHHHHHhcCCeEEEEecc--------
Q 016911 205 DVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISAS-------- 276 (380)
Q Consensus 205 ~~~~~~l~Gl~~~k~~L~~~l~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~l~~~~v~v~~s-------- 276 (380)
..++..++|++..+..|.-.... ..-.++||-|+.|+||||++|+++..|.---+...|.
T Consensus 13 ~~pf~aivGqd~lk~aL~l~av~------------P~iggvLI~G~kGtaKSt~~Rala~LLp~~~~V~gc~f~cdP~~P 80 (423)
T COG1239 13 NLPFTAIVGQDPLKLALGLNAVD------------PQIGGALIAGEKGTAKSTLARALADLLPEIEVVIGCPFNCDPDDP 80 (423)
T ss_pred ccchhhhcCchHHHHHHhhhhcc------------cccceeEEecCCCccHHHHHHHHHHhCCccceecCCCCCCCCCCh
Confidence 45788999999988877633211 2236899999999999999999999883222222331
Q ss_pred ------------------------hhhhhhccchHHHH----------HH---HHH---HHHhcCCeEEEEcCcchhhhh
Q 016911 277 ------------------------SVVSKWRGDSEKLI----------KV---LFE---LARHHAPSTIFLDEIDAIISQ 316 (380)
Q Consensus 277 ------------------------~l~~~~~ge~e~~l----------~~---lf~---~A~~~~p~ILfIDEiD~l~~~ 316 (380)
.++..-.+.++.++ +. .|. .++.+ .+|+++||+..|..
T Consensus 81 ~~~c~~c~~k~~e~~~~~~~~r~v~~v~lPl~ateDrvvGslDi~ka~~~g~~af~PGlLa~An-RGIlYvDEvnlL~d- 158 (423)
T COG1239 81 EEMCDECRAKGDELEWLPREKRKVPFVALPLGATEDRLVGSLDIEKALEEGPKAFQPGLLARAN-RGILYVDEVNLLDD- 158 (423)
T ss_pred hhhhHHHHhhccccccccccceecceecCCCccchhhhccccCHHHHHhcCccccCCcchhhcc-CCEEEEeccccccH-
Confidence 01111112233311 10 010 12222 36999999987732
Q ss_pred ccccchhhHHHHHHHHHHHHHhc---------CCc-cCCCcEEEEEEeCCCC-CchHHHHhcccceeEecCCC
Q 016911 317 RGEARSEHEASRRLKTELLIQMD---------GLT-QSDELVFVLAATNLPW-ELDAAMLRRLEKRVSFSLIA 378 (380)
Q Consensus 317 ~~~~~~~~~~~~~i~~~Ll~~ld---------gl~-~~~~~VlVIatTN~~~-~Ld~aLlrRF~~~I~~plPd 378 (380)
.+++.|++.+. |++ ...-++++|+|+|..+ +|-+.|++||...+....|.
T Consensus 159 ------------~lvd~LLd~aaeG~n~vereGisi~hpa~fvligTmNPEeGeLrpqLlDRfg~~v~~~~~~ 219 (423)
T COG1239 159 ------------HLVDALLDVAAEGVNDVEREGISIRHPARFLLIGTMNPEEGELRPQLLDRFGLEVDTHYPL 219 (423)
T ss_pred ------------HHHHHHHHHHHhCCceeeeCceeeccCccEEEEeecCccccccchhhHhhhcceeeccCCC
Confidence 34555555442 332 2345688999999875 49999999999988887765
No 220
>PRK09087 hypothetical protein; Validated
Probab=98.50 E-value=3.7e-07 Score=86.03 Aligned_cols=106 Identities=22% Similarity=0.252 Sum_probs=62.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhcCCeEEEEecchhhhhhccchHHHHHHHHHHHHhcCCeEEEEcCcchhhhhccccc
Q 016911 242 WKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEAR 321 (380)
Q Consensus 242 ~~~vLL~GppGtGKT~la~ala~~l~~~~v~v~~s~l~~~~~ge~e~~l~~lf~~A~~~~p~ILfIDEiD~l~~~~~~~~ 321 (380)
...++|+||+|+|||||+++++...+..+ ++...+.... +.... ..+|+|||++.+..+
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~~~~~~--i~~~~~~~~~-----------~~~~~---~~~l~iDDi~~~~~~----- 102 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREKSDALL--IHPNEIGSDA-----------ANAAA---EGPVLIEDIDAGGFD----- 102 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhcCCEE--ecHHHcchHH-----------HHhhh---cCeEEEECCCCCCCC-----
Confidence 34599999999999999999998776553 3332222111 11111 148999999976211
Q ss_pred hhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCCCCC---chHHHHhccc--ceeEecCCC
Q 016911 322 SEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWE---LDAAMLRRLE--KRVSFSLIA 378 (380)
Q Consensus 322 ~~~~~~~~i~~~Ll~~ldgl~~~~~~VlVIatTN~~~~---Ld~aLlrRF~--~~I~~plPd 378 (380)
+ ..|+..++.+.... ..+||+++..|.. ..+.+++||. ..+++..|+
T Consensus 103 -~--------~~lf~l~n~~~~~g-~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd 154 (226)
T PRK09087 103 -E--------TGLFHLINSVRQAG-TSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPD 154 (226)
T ss_pred -H--------HHHHHHHHHHHhCC-CeEEEECCCChHHhccccccHHHHHhCCceeecCCCC
Confidence 1 12333333333232 3445555544432 3688999996 455666665
No 221
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.46 E-value=2e-06 Score=72.58 Aligned_cols=73 Identities=23% Similarity=0.419 Sum_probs=48.3
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhc--------CCeEEEEecchhhhh--------------hcc--chHHHHHHHHHHH
Q 016911 242 WKGILLFGPPGTGKTMLAKAVATEC--------KTTFFNISASSVVSK--------------WRG--DSEKLIKVLFELA 297 (380)
Q Consensus 242 ~~~vLL~GppGtGKT~la~ala~~l--------~~~~v~v~~s~l~~~--------------~~g--e~e~~l~~lf~~A 297 (380)
...++++||||+|||++++.++..+ +.+++.+++...... ... ........+.+..
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~l 83 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDAL 83 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHHH
Confidence 4689999999999999999999987 678888887644310 001 1233444444555
Q ss_pred HhcCCeEEEEcCcchhh
Q 016911 298 RHHAPSTIFLDEIDAII 314 (380)
Q Consensus 298 ~~~~p~ILfIDEiD~l~ 314 (380)
......+|+|||+|.+.
T Consensus 84 ~~~~~~~lviDe~~~l~ 100 (131)
T PF13401_consen 84 DRRRVVLLVIDEADHLF 100 (131)
T ss_dssp HHCTEEEEEEETTHHHH
T ss_pred HhcCCeEEEEeChHhcC
Confidence 55544599999999974
No 222
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=98.44 E-value=6.6e-07 Score=90.00 Aligned_cols=103 Identities=19% Similarity=0.234 Sum_probs=62.3
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHhcCC-eEEEEecchhhhhhccchH------HHHHHHHHHHHhcCCeEEEEcCcch
Q 016911 240 SPWKGILLFGPPGTGKTMLAKAVATECKT-TFFNISASSVVSKWRGDSE------KLIKVLFELARHHAPSTIFLDEIDA 312 (380)
Q Consensus 240 ~~~~~vLL~GppGtGKT~la~ala~~l~~-~~v~v~~s~l~~~~~ge~e------~~l~~lf~~A~~~~p~ILfIDEiD~ 312 (380)
.+++|++|||++|+|||+|+.++.+.+.. .-..++...++........ ..+..+.+.... ...||++||+..
T Consensus 60 ~~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~R~HFh~Fm~~vh~~l~~~~~~~~~l~~va~~l~~-~~~lLcfDEF~V 138 (362)
T PF03969_consen 60 PPPKGLYLWGPVGRGKTMLMDLFYDSLPIKRKRRVHFHEFMLDVHSRLHQLRGQDDPLPQVADELAK-ESRLLCFDEFQV 138 (362)
T ss_pred CCCceEEEECCCCCchhHHHHHHHHhCCccccccccccHHHHHHHHHHHHHhCCCccHHHHHHHHHh-cCCEEEEeeeec
Confidence 56799999999999999999999988855 3334444454433221111 111222222111 124999999964
Q ss_pred hhhhccccchhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCCCC
Q 016911 313 IISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPW 358 (380)
Q Consensus 313 l~~~~~~~~~~~~~~~~i~~~Ll~~ldgl~~~~~~VlVIatTN~~~ 358 (380)
- +.....++..|+..+ -..++++|+|||++-
T Consensus 139 ~----------DiaDAmil~rLf~~l-----~~~gvvlVaTSN~~P 169 (362)
T PF03969_consen 139 T----------DIADAMILKRLFEAL-----FKRGVVLVATSNRPP 169 (362)
T ss_pred c----------chhHHHHHHHHHHHH-----HHCCCEEEecCCCCh
Confidence 2 112244556666655 234578899999874
No 223
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=98.44 E-value=6e-07 Score=92.60 Aligned_cols=143 Identities=23% Similarity=0.276 Sum_probs=89.9
Q ss_pred ccccccchHHHHHHHHHHHhccccCcccccccCCCCceEEEEcCCCCcHHHHHHHHHHhc---CCeEEEEecchhhhhhc
Q 016911 207 KWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKWR 283 (380)
Q Consensus 207 ~~~~l~Gl~~~k~~L~~~l~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~l---~~~~v~v~~s~l~~~~~ 283 (380)
.+.+++|.+...+.+.+.+.. .......+++.|++||||+++|++++... +.+|+.++|+.+.....
T Consensus 136 ~~~~lig~s~~~~~l~~~~~~----------~~~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~i~i~c~~~~~~~~ 205 (469)
T PRK10923 136 PTTDIIGEAPAMQDVFRIIGR----------LSRSSISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPKDLI 205 (469)
T ss_pred ccccceecCHHHHHHHHHHHH----------HhccCCeEEEEeCCCCcHHHHHHHHHhcCCCCCCCeEeeeCCCCCHHHH
Confidence 355788887777666655432 12345789999999999999999999877 56999999987733211
Q ss_pred cchHHHHHHHHHH---------------HHhcCCeEEEEcCcchhhhhccccchhhHHHHHHHHHHHHHhcCC-------
Q 016911 284 GDSEKLIKVLFEL---------------ARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGL------- 341 (380)
Q Consensus 284 ge~e~~l~~lf~~---------------A~~~~p~ILfIDEiD~l~~~~~~~~~~~~~~~~i~~~Ll~~ldgl------- 341 (380)
...+|.. .....++.|||||++.+... .+..|+..++.-
T Consensus 206 ------~~~lfg~~~g~~~~~~~~~~g~~~~a~~Gtl~l~~i~~l~~~-------------~q~~L~~~l~~~~~~~~~~ 266 (469)
T PRK10923 206 ------ESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEIGDMPLD-------------VQTRLLRVLADGQFYRVGG 266 (469)
T ss_pred ------HHHhcCCCCCCCCCCCcCCCCCeeECCCCEEEEeccccCCHH-------------HHHHHHHHHhcCcEEeCCC
Confidence 1111110 11223579999999998653 223344444321
Q ss_pred -ccCCCcEEEEEEeCCCC-------CchHHHHhcccceeEecCCCC
Q 016911 342 -TQSDELVFVLAATNLPW-------ELDAAMLRRLEKRVSFSLIAL 379 (380)
Q Consensus 342 -~~~~~~VlVIatTN~~~-------~Ld~aLlrRF~~~I~~plPd~ 379 (380)
.....++.+|+||+..- .+.+.|..||. .+.+.+|.+
T Consensus 267 ~~~~~~~~rii~~~~~~l~~~~~~~~~~~~L~~~l~-~~~i~~PpL 311 (469)
T PRK10923 267 YAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHRLN-VIRVHLPPL 311 (469)
T ss_pred CCeEEeeEEEEEeCCCCHHHHHHcCCchHHHHHHhc-ceeecCCCc
Confidence 11123468898987642 35567777874 356666654
No 224
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.43 E-value=1.8e-06 Score=92.41 Aligned_cols=61 Identities=15% Similarity=0.149 Sum_probs=47.2
Q ss_pred CCCCccccccchHHHHHHHHHHHhccccCcccccccCCCCceEEEEcCCCCcHHHHHHHHHHhcCCeE
Q 016911 203 SPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTF 270 (380)
Q Consensus 203 ~p~~~~~~l~Gl~~~k~~L~~~l~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~l~~~~ 270 (380)
.+...+++++|.+..++.+..++..... ...+...++|+||||||||++++.+|+.++..+
T Consensus 78 yrP~~ldel~~~~~ki~~l~~~l~~~~~-------~~~~~~illL~GP~GsGKTTl~~~la~~l~~~~ 138 (637)
T TIGR00602 78 YKPETQHELAVHKKKIEEVETWLKAQVL-------ENAPKRILLITGPSGCGKSTTIKILSKELGIQV 138 (637)
T ss_pred hCCCCHHHhcCcHHHHHHHHHHHHhccc-------ccCCCcEEEEECCCCCCHHHHHHHHHHHhhhHH
Confidence 4566789999999999988877643211 123445699999999999999999999987654
No 225
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=98.41 E-value=3.1e-06 Score=72.99 Aligned_cols=72 Identities=25% Similarity=0.410 Sum_probs=47.9
Q ss_pred EEEEcCCCCcHHHHHHHHHHhc---CCeEEEEecchhhhhh----------------------c--cchHHHHHHHHHHH
Q 016911 245 ILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKW----------------------R--GDSEKLIKVLFELA 297 (380)
Q Consensus 245 vLL~GppGtGKT~la~ala~~l---~~~~v~v~~s~l~~~~----------------------~--ge~e~~l~~lf~~A 297 (380)
++++||||+|||+++..++... +.+.+.++........ . .............+
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIEELTERLIGESLKGALDNLIIVFATADDPAAARLLSKAERLR 81 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcchHHHHHHHhhhhhccccccEEEEEcCCCCCcHHHHHHHHHHHH
Confidence 6899999999999999998877 4566666554322110 0 01112222334556
Q ss_pred HhcCCeEEEEcCcchhhhh
Q 016911 298 RHHAPSTIFLDEIDAIISQ 316 (380)
Q Consensus 298 ~~~~p~ILfIDEiD~l~~~ 316 (380)
....+.+++|||+..+...
T Consensus 82 ~~~~~~~lviDe~~~~~~~ 100 (165)
T cd01120 82 ERGGDDLIILDELTRLVRA 100 (165)
T ss_pred hCCCCEEEEEEcHHHHHHH
Confidence 6777899999999988653
No 226
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=98.41 E-value=1.1e-06 Score=90.24 Aligned_cols=145 Identities=23% Similarity=0.326 Sum_probs=85.9
Q ss_pred cccccchHHHHHHHHHHHhccccCcccccccCCCCceEEEEcCCCCcHHHHHHHHHHhc---CCeEEEEecchhhhhhc-
Q 016911 208 WESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKWR- 283 (380)
Q Consensus 208 ~~~l~Gl~~~k~~L~~~l~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~l---~~~~v~v~~s~l~~~~~- 283 (380)
+..++|.+.....+.+.+.. .......++++|++||||+++|+++.... +.+|+.++|..+.....
T Consensus 142 ~~~ii~~S~~~~~~~~~~~~----------~a~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~~~i~c~~~~~~~~~ 211 (457)
T PRK11361 142 WGHILTNSPAMMDICKDTAK----------IALSQASVLISGESGTGKELIARAIHYNSRRAKGPFIKVNCAALPESLLE 211 (457)
T ss_pred ccceecccHHHhHHHHHHHH----------HcCCCcEEEEEcCCCccHHHHHHHHHHhCCCCCCCeEEEECCCCCHHHHH
Confidence 34567766655555544322 12344689999999999999999998765 57999999987643211
Q ss_pred ----cchHH-------HHHHHHHHHHhcCCeEEEEcCcchhhhhccccchhhHHHHHHHHHHHHHhcCC--------ccC
Q 016911 284 ----GDSEK-------LIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGL--------TQS 344 (380)
Q Consensus 284 ----ge~e~-------~l~~lf~~A~~~~p~ILfIDEiD~l~~~~~~~~~~~~~~~~i~~~Ll~~ldgl--------~~~ 344 (380)
|.... .....+.. ..+++|||||++.+... .+..|+..++.- ...
T Consensus 212 ~~lfg~~~~~~~~~~~~~~g~~~~---a~~gtl~ld~i~~l~~~-------------~q~~L~~~l~~~~~~~~~~~~~~ 275 (457)
T PRK11361 212 SELFGHEKGAFTGAQTLRQGLFER---ANEGTLLLDEIGEMPLV-------------LQAKLLRILQEREFERIGGHQTI 275 (457)
T ss_pred HHhcCCCCCCCCCCCCCCCCceEE---CCCCEEEEechhhCCHH-------------HHHHHHHHHhcCcEEeCCCCcee
Confidence 10000 00011222 23579999999998653 223344444321 111
Q ss_pred CCcEEEEEEeCCCC-------CchHHHHhcccceeEecCCCC
Q 016911 345 DELVFVLAATNLPW-------ELDAAMLRRLEKRVSFSLIAL 379 (380)
Q Consensus 345 ~~~VlVIatTN~~~-------~Ld~aLlrRF~~~I~~plPd~ 379 (380)
..++.+|+||+..- .+.+.+..|+. .+.+.+|.+
T Consensus 276 ~~~~rii~~t~~~l~~~~~~g~~~~~l~~~l~-~~~i~~ppL 316 (457)
T PRK11361 276 KVDIRIIAATNRDLQAMVKEGTFREDLFYRLN-VIHLILPPL 316 (457)
T ss_pred eeceEEEEeCCCCHHHHHHcCCchHHHHHHhc-cceecCCCh
Confidence 23478899998642 24455555663 366666654
No 227
>KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair]
Probab=98.36 E-value=3.8e-07 Score=88.99 Aligned_cols=139 Identities=20% Similarity=0.193 Sum_probs=88.3
Q ss_pred ccCCCCccccccchHHHHHHHHHHHhccccCcccccccCCCCceEEEEcCCCCcHHHHHHHHHHhcCCe------EEEEe
Q 016911 201 RGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT------FFNIS 274 (380)
Q Consensus 201 ~~~p~~~~~~l~Gl~~~k~~L~~~l~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~l~~~------~v~v~ 274 (380)
.+.+...++++++.++....+.+.... ..-.++|+|||||+|||+...+.|..+..+ +..++
T Consensus 33 ekyrP~~l~dv~~~~ei~st~~~~~~~------------~~lPh~L~YgPPGtGktsti~a~a~~ly~~~~~~~m~leln 100 (360)
T KOG0990|consen 33 EKYRPPFLGIVIKQEPIWSTENRYSGM------------PGLPHLLFYGPPGTGKTSTILANARDFYSPHPTTSMLLELN 100 (360)
T ss_pred cCCCCchhhhHhcCCchhhHHHHhccC------------CCCCcccccCCCCCCCCCchhhhhhhhcCCCCchhHHHHhh
Confidence 344556678888888887777765322 111399999999999999999999988553 12223
Q ss_pred cchhhhhhccchHHHHHHHHHHHHh-------cCCeEEEEcCcchhhhhccccchhhHHHHHHHHHHHHHhcCCccCCCc
Q 016911 275 ASSVVSKWRGDSEKLIKVLFELARH-------HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDEL 347 (380)
Q Consensus 275 ~s~l~~~~~ge~e~~l~~lf~~A~~-------~~p~ILfIDEiD~l~~~~~~~~~~~~~~~~i~~~Ll~~ldgl~~~~~~ 347 (380)
.++-.+- + ....--..|..++. ..+..+++||+|.+.... +++|-..+. ....+
T Consensus 101 aSd~rgi--d-~vr~qi~~fast~~~~~fst~~~fKlvILDEADaMT~~A-------------QnALRRvie---k~t~n 161 (360)
T KOG0990|consen 101 ASDDRGI--D-PVRQQIHLFASTQQPTTYSTHAAFKLVILDEADAMTRDA-------------QNALRRVIE---KYTAN 161 (360)
T ss_pred ccCccCC--c-chHHHHHHHHhhccceeccccCceeEEEecchhHhhHHH-------------HHHHHHHHH---Hhccc
Confidence 3222111 1 11222234554443 256799999999985432 222333332 23444
Q ss_pred EEEEEEeCCCCCchHHHHhcccc
Q 016911 348 VFVLAATNLPWELDAAMLRRLEK 370 (380)
Q Consensus 348 VlVIatTN~~~~Ld~aLlrRF~~ 370 (380)
+.++..+|.+..+.+++++||..
T Consensus 162 ~rF~ii~n~~~ki~pa~qsRctr 184 (360)
T KOG0990|consen 162 TRFATISNPPQKIHPAQQSRCTR 184 (360)
T ss_pred eEEEEeccChhhcCchhhccccc
Confidence 66778899999999999998865
No 228
>PLN03140 ABC transporter G family member; Provisional
Probab=98.35 E-value=2.9e-07 Score=106.94 Aligned_cols=125 Identities=18% Similarity=0.218 Sum_probs=87.7
Q ss_pred ccccccchhhHHHHHhhhhccchhhh---hHHHHHHHHHhcCCCCCCCCcHHHHHHhhhccchhhccCCCCc--cccccc
Q 016911 139 VQNTSDMAVYEQYRTQFQGSGSTCLN---GVLANVINERLQKPLLPNFDSAETRALAESLCRDIIRGSPDVK--WESIKG 213 (380)
Q Consensus 139 ~~~~~~L~~~~~~~~~~~~~~~~~~~---~~~~~~l~er~~~~v~~~l~~~e~r~~~~~~~~~~~~~~p~~~--~~~l~G 213 (380)
++|+.+|+ ..+++..++++.+..+ +.++..++++.+ +++.++|+.++++.++++..++.++...++ ++.+..
T Consensus 83 ~~~~~~~~--~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~-~~~~~~~~~~v~~~~l~v~~~~~~~~~~~~t~~~~~~~ 159 (1470)
T PLN03140 83 EVDVTKLD--GNDRQKFIDMVFKVAEEDNEKFLKKFRNRID-RVGIKLPTVEVRFEHLTVEADCYIGSRALPTLPNAARN 159 (1470)
T ss_pred ccccccCC--hHHHHHHHHhhhcccchhHHHHHHHHHhhhc-cccCCCCCCeeEEeCCEEEEEecCCcccCCcHHHHHHH
Confidence 48999998 6888888888776555 556777888888 899999999999999999999876654432 222222
Q ss_pred hHHHHHHHHHH-Hh--ccccCcccccccCCCCceEEEEcCCCCcHHHHHHHHHHhc
Q 016911 214 LENAKRLLKEA-VV--MPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC 266 (380)
Q Consensus 214 l~~~k~~L~~~-l~--~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~l 266 (380)
.-+....+... .. ......+.++..++|+..++|.||||+|||||++++++.+
T Consensus 160 ~~~~~~~~~~~~~~k~~~~~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l 215 (1470)
T PLN03140 160 IAESALGMLGINLAKKTKLTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKL 215 (1470)
T ss_pred HHHHHHHHhccccCCCccceeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCC
Confidence 11111111000 00 1112234455558999999999999999999999999986
No 229
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=98.26 E-value=6.3e-06 Score=80.45 Aligned_cols=116 Identities=11% Similarity=0.112 Sum_probs=75.9
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHhcCCe----------------EEEEecchhhhhhccchHHHHHHHHHHHH----hc
Q 016911 241 PWKGILLFGPPGTGKTMLAKAVATECKTT----------------FFNISASSVVSKWRGDSEKLIKVLFELAR----HH 300 (380)
Q Consensus 241 ~~~~vLL~GppGtGKT~la~ala~~l~~~----------------~v~v~~s~l~~~~~ge~e~~l~~lf~~A~----~~ 300 (380)
-+..+||+||+|+||+++|.++|..+-.. ++.+.... .+.. -.-..++.+...+. ..
T Consensus 18 l~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~~-~~~~--I~idqiR~l~~~~~~~p~e~ 94 (290)
T PRK05917 18 VPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQG-KGRL--HSIETPRAIKKQIWIHPYES 94 (290)
T ss_pred cCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecCC-CCCc--CcHHHHHHHHHHHhhCccCC
Confidence 34689999999999999999999877321 11111100 0000 01223344433333 23
Q ss_pred CCeEEEEcCcchhhhhccccchhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCCCCCchHHHHhcccceeEecC
Q 016911 301 APSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRVSFSL 376 (380)
Q Consensus 301 ~p~ILfIDEiD~l~~~~~~~~~~~~~~~~i~~~Ll~~ldgl~~~~~~VlVIatTN~~~~Ld~aLlrRF~~~I~~pl 376 (380)
...|++||++|.+.. ...+.|++.++ ..+.++++|..|+.++.+.|+++||+. .+.|+.
T Consensus 95 ~~kv~ii~~ad~mt~-------------~AaNaLLK~LE---EPp~~~~fiL~~~~~~~ll~TI~SRcq-~~~~~~ 153 (290)
T PRK05917 95 PYKIYIIHEADRMTL-------------DAISAFLKVLE---DPPQHGVIILTSAKPQRLPPTIRSRSL-SIHIPM 153 (290)
T ss_pred CceEEEEechhhcCH-------------HHHHHHHHHhh---cCCCCeEEEEEeCChhhCcHHHHhcce-EEEccc
Confidence 346999999999843 24567888874 466678888999999999999999985 355554
No 230
>COG1485 Predicted ATPase [General function prediction only]
Probab=98.21 E-value=9.2e-06 Score=80.49 Aligned_cols=103 Identities=22% Similarity=0.292 Sum_probs=63.3
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHhcCCeE-EEEecchhhhh-------hccchHHHHHHHHHHHHhcCCeEEEEcCc
Q 016911 239 LSPWKGILLFGPPGTGKTMLAKAVATECKTTF-FNISASSVVSK-------WRGDSEKLIKVLFELARHHAPSTIFLDEI 310 (380)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~la~ala~~l~~~~-v~v~~s~l~~~-------~~ge~e~~l~~lf~~A~~~~p~ILfIDEi 310 (380)
..+++|++|||+.|+|||+|.......+..+- ..++...++.. ..|+..-.-...-+.+.. -.||++||+
T Consensus 62 ~~~~~GlYl~GgVGrGKT~LMD~Fy~~lp~~~k~R~HFh~FM~~vH~~l~~l~g~~dpl~~iA~~~~~~--~~vLCfDEF 139 (367)
T COG1485 62 HGPVRGLYLWGGVGRGKTMLMDLFYESLPGERKRRLHFHRFMARVHQRLHTLQGQTDPLPPIADELAAE--TRVLCFDEF 139 (367)
T ss_pred CCCCceEEEECCCCccHHHHHHHHHhhCCccccccccHHHHHHHHHHHHHHHcCCCCccHHHHHHHHhc--CCEEEeeee
Confidence 45779999999999999999999998885533 44444444332 223331111111222222 249999999
Q ss_pred chhhhhccccchhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCCCC
Q 016911 311 DAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPW 358 (380)
Q Consensus 311 D~l~~~~~~~~~~~~~~~~i~~~Ll~~ldgl~~~~~~VlVIatTN~~~ 358 (380)
..- +.....++..|+..+ -..+|.+++|||.+-
T Consensus 140 ~Vt----------DI~DAMiL~rL~~~L-----f~~GV~lvaTSN~~P 172 (367)
T COG1485 140 EVT----------DIADAMILGRLLEAL-----FARGVVLVATSNTAP 172 (367)
T ss_pred eec----------ChHHHHHHHHHHHHH-----HHCCcEEEEeCCCCh
Confidence 532 111244666666665 233588899999864
No 231
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.21 E-value=1e-05 Score=77.81 Aligned_cols=142 Identities=16% Similarity=0.219 Sum_probs=89.7
Q ss_pred CCCccccccchHHHHHHHHHHHhccccCcccccccCCCCceEEEEcCCCCcHHHHHHHHHHhcCC---e--------E--
Q 016911 204 PDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKT---T--------F-- 270 (380)
Q Consensus 204 p~~~~~~l~Gl~~~k~~L~~~l~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~l~~---~--------~-- 270 (380)
+...++.+.+.++....++..... ....++++|||+|+||-|.+.++-+++.. + |
T Consensus 8 rpksl~~l~~~~e~~~~Lksl~~~------------~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~t 75 (351)
T KOG2035|consen 8 RPKSLDELIYHEELANLLKSLSST------------GDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTT 75 (351)
T ss_pred CcchhhhcccHHHHHHHHHHhccc------------CCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEec
Confidence 334566777888777777765421 12368999999999999999999887711 0 0
Q ss_pred ----------------EEEecchhhhhhccch-HHHHHHHHHHHHhc---------CCeEEEEcCcchhhhhccccchhh
Q 016911 271 ----------------FNISASSVVSKWRGDS-EKLIKVLFELARHH---------APSTIFLDEIDAIISQRGEARSEH 324 (380)
Q Consensus 271 ----------------v~v~~s~l~~~~~ge~-e~~l~~lf~~A~~~---------~p~ILfIDEiD~l~~~~~~~~~~~ 324 (380)
+++++++. |.. .-.+..+....-+. .-.+++|.|+|.+..+.
T Consensus 76 pS~kklEistvsS~yHlEitPSDa-----G~~DRvViQellKevAQt~qie~~~qr~fKvvvi~ead~LT~dA------- 143 (351)
T KOG2035|consen 76 PSKKKLEISTVSSNYHLEITPSDA-----GNYDRVVIQELLKEVAQTQQIETQGQRPFKVVVINEADELTRDA------- 143 (351)
T ss_pred CCCceEEEEEecccceEEeChhhc-----CcccHHHHHHHHHHHHhhcchhhccccceEEEEEechHhhhHHH-------
Confidence 12222221 222 22333443333222 23599999999996432
Q ss_pred HHHHHHHHHHHHHhcCCccCCCcEEEEEEeCCCCCchHHHHhcccceeEecCCCC
Q 016911 325 EASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRVSFSLIAL 379 (380)
Q Consensus 325 ~~~~~i~~~Ll~~ldgl~~~~~~VlVIatTN~~~~Ld~aLlrRF~~~I~~plPd~ 379 (380)
+..|-..|+ ....++.+|..+|..+.+-+++++|+ ..+.+|.|+.
T Consensus 144 ------Q~aLRRTME---kYs~~~RlIl~cns~SriIepIrSRC-l~iRvpaps~ 188 (351)
T KOG2035|consen 144 ------QHALRRTME---KYSSNCRLILVCNSTSRIIEPIRSRC-LFIRVPAPSD 188 (351)
T ss_pred ------HHHHHHHHH---HHhcCceEEEEecCcccchhHHhhhe-eEEeCCCCCH
Confidence 222333342 23345678889999999999999998 4578888875
No 232
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.16 E-value=3.5e-05 Score=73.31 Aligned_cols=26 Identities=31% Similarity=0.346 Sum_probs=23.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhcC
Q 016911 242 WKGILLFGPPGTGKTMLAKAVATECK 267 (380)
Q Consensus 242 ~~~vLL~GppGtGKT~la~ala~~l~ 267 (380)
...++|+||+|+||||+++.+++.+.
T Consensus 43 ~~~~~l~G~~G~GKTtl~~~l~~~l~ 68 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLIRNLLKRLD 68 (269)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHhcC
Confidence 34688999999999999999999875
No 233
>PRK15115 response regulator GlrR; Provisional
Probab=98.16 E-value=4.1e-06 Score=85.72 Aligned_cols=70 Identities=27% Similarity=0.406 Sum_probs=49.5
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHhc---CCeEEEEecchhhhhhccchHHHHHHHHHH---------------HHhcCC
Q 016911 241 PWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKWRGDSEKLIKVLFEL---------------ARHHAP 302 (380)
Q Consensus 241 ~~~~vLL~GppGtGKT~la~ala~~l---~~~~v~v~~s~l~~~~~ge~e~~l~~lf~~---------------A~~~~p 302 (380)
....++++|++||||+++|+++.... +.+|+.++|..+..... -..+|.. .....+
T Consensus 156 ~~~~vli~Ge~GtGk~~lA~~ih~~s~r~~~~f~~i~c~~~~~~~~------~~~lfg~~~~~~~~~~~~~~g~~~~a~~ 229 (444)
T PRK15115 156 SDVSVLINGQSGTGKEILAQAIHNASPRASKPFIAINCGALPEQLL------ESELFGHARGAFTGAVSNREGLFQAAEG 229 (444)
T ss_pred CCCeEEEEcCCcchHHHHHHHHHHhcCCCCCCeEEEeCCCCCHHHH------HHHhcCCCcCCCCCCccCCCCcEEECCC
Confidence 34679999999999999999998876 57999999987643221 1112211 112235
Q ss_pred eEEEEcCcchhhhh
Q 016911 303 STIFLDEIDAIISQ 316 (380)
Q Consensus 303 ~ILfIDEiD~l~~~ 316 (380)
++|||||+|.+...
T Consensus 230 gtl~l~~i~~l~~~ 243 (444)
T PRK15115 230 GTLFLDEIGDMPAP 243 (444)
T ss_pred CEEEEEccccCCHH
Confidence 79999999998653
No 234
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=98.16 E-value=2.4e-06 Score=87.83 Aligned_cols=147 Identities=21% Similarity=0.232 Sum_probs=86.4
Q ss_pred ccccchHHHHHHHHHHHhccccCcccccccCCCCceEEEEcCCCCcHHHHHHHHHHhc---CCeEEEEecchhhhhhc--
Q 016911 209 ESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKWR-- 283 (380)
Q Consensus 209 ~~l~Gl~~~k~~L~~~l~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~l---~~~~v~v~~s~l~~~~~-- 283 (380)
..++|.......+.+.+... ......+++.|++||||+++|+++.... +.+|+.++|..+.....
T Consensus 134 ~~lig~s~~~~~v~~~i~~~----------a~~~~~vli~Ge~GtGK~~~A~~ih~~~~~~~~~~~~~~c~~~~~~~~~~ 203 (463)
T TIGR01818 134 AELIGEAPAMQEVFRAIGRL----------SRSDITVLINGESGTGKELVARALHRHSPRANGPFIALNMAAIPKDLIES 203 (463)
T ss_pred cceeecCHHHHHHHHHHHHH----------hCcCCeEEEECCCCCCHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHH
Confidence 45777777666666544321 1334679999999999999999998875 56999999987643221
Q ss_pred ---cchH----HHHHHHHHHHHhcCCeEEEEcCcchhhhhccccchhhHHHHHHHHHHHHHhcCC--------ccCCCcE
Q 016911 284 ---GDSE----KLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGL--------TQSDELV 348 (380)
Q Consensus 284 ---ge~e----~~l~~lf~~A~~~~p~ILfIDEiD~l~~~~~~~~~~~~~~~~i~~~Ll~~ldgl--------~~~~~~V 348 (380)
|... ..............+++|||||++.+.... ...|+..++.- .....++
T Consensus 204 ~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~l~ei~~l~~~~-------------q~~ll~~l~~~~~~~~~~~~~~~~~~ 270 (463)
T TIGR01818 204 ELFGHEKGAFTGANTRRQGRFEQADGGTLFLDEIGDMPLDA-------------QTRLLRVLADGEFYRVGGRTPIKVDV 270 (463)
T ss_pred HhcCCCCCCCCCcccCCCCcEEECCCCeEEEEchhhCCHHH-------------HHHHHHHHhcCcEEECCCCceeeeee
Confidence 1000 000000000112236799999999986532 23344443321 1112246
Q ss_pred EEEEEeCCCC-------CchHHHHhcccceeEecCCCC
Q 016911 349 FVLAATNLPW-------ELDAAMLRRLEKRVSFSLIAL 379 (380)
Q Consensus 349 lVIatTN~~~-------~Ld~aLlrRF~~~I~~plPd~ 379 (380)
.+|++|+..- .+.+.|..|+. .+.+.+|.+
T Consensus 271 rii~~~~~~l~~~~~~~~f~~~L~~rl~-~~~i~lPpL 307 (463)
T TIGR01818 271 RIVAATHQNLEALVRQGKFREDLFHRLN-VIRIHLPPL 307 (463)
T ss_pred EEEEeCCCCHHHHHHcCCcHHHHHHHhC-cceecCCCc
Confidence 7888887642 34556767764 356666654
No 235
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=98.12 E-value=8e-06 Score=81.67 Aligned_cols=77 Identities=35% Similarity=0.386 Sum_probs=53.1
Q ss_pred CccccccchHHHHHHHHHHHhccccCcccccccCCCCceEEEEcCCCCcHHHHHHHHHHhcC--CeEEEEecchhhhhhc
Q 016911 206 VKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECK--TTFFNISASSVVSKWR 283 (380)
Q Consensus 206 ~~~~~l~Gl~~~k~~L~~~l~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~l~--~~~v~v~~s~l~~~~~ 283 (380)
..-+.++|+.++.++..-.+.+-.. . --.++++||.||||||||.||-++|++++ .||..++++++.+.-+
T Consensus 21 ~~~~GlVGQ~~AReAagiiv~mIk~-~------K~aGr~iLiaGppGtGKTAlA~~ia~eLG~~~PF~~isgSEiyS~e~ 93 (398)
T PF06068_consen 21 YIADGLVGQEKAREAAGIIVDMIKE-G------KIAGRAILIAGPPGTGKTALAMAIAKELGEDVPFVSISGSEIYSSEV 93 (398)
T ss_dssp SEETTEES-HHHHHHHHHHHHHHHT-T--------TT-EEEEEE-TTSSHHHHHHHHHHHCTTTS-EEEEEGGGG-BTTC
T ss_pred eccccccChHHHHHHHHHHHHHHhc-c------cccCcEEEEeCCCCCCchHHHHHHHHHhCCCCCeeEcccceeeeccc
Confidence 3357899999999887644433211 1 12468999999999999999999999995 8999999999987665
Q ss_pred cchHHH
Q 016911 284 GDSEKL 289 (380)
Q Consensus 284 ge~e~~ 289 (380)
..++..
T Consensus 94 kKTE~L 99 (398)
T PF06068_consen 94 KKTEAL 99 (398)
T ss_dssp -HHHHH
T ss_pred CchHHH
Confidence 544433
No 236
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.11 E-value=1.2e-05 Score=77.84 Aligned_cols=127 Identities=20% Similarity=0.281 Sum_probs=67.8
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHhcCC-e--EEEEecchhhhhhccchHHHHHHHHHHH-----------HhcCCeEEE
Q 016911 241 PWKGILLFGPPGTGKTMLAKAVATECKT-T--FFNISASSVVSKWRGDSEKLIKVLFELA-----------RHHAPSTIF 306 (380)
Q Consensus 241 ~~~~vLL~GppGtGKT~la~ala~~l~~-~--~v~v~~s~l~~~~~ge~e~~l~~lf~~A-----------~~~~p~ILf 306 (380)
..+++||+||+|||||++++.+-..++. . ...++++.... ...+..+.+.. ...+..|+|
T Consensus 32 ~~~pvLl~G~~GtGKT~li~~~l~~l~~~~~~~~~~~~s~~Tt------s~~~q~~ie~~l~k~~~~~~gP~~~k~lv~f 105 (272)
T PF12775_consen 32 NGRPVLLVGPSGTGKTSLIQNFLSSLDSDKYLVITINFSAQTT------SNQLQKIIESKLEKRRGRVYGPPGGKKLVLF 105 (272)
T ss_dssp CTEEEEEESSTTSSHHHHHHHHHHCSTTCCEEEEEEES-TTHH------HHHHHHCCCTTECECTTEEEEEESSSEEEEE
T ss_pred cCCcEEEECCCCCchhHHHHhhhccCCccccceeEeeccCCCC------HHHHHHHHhhcEEcCCCCCCCCCCCcEEEEE
Confidence 4579999999999999999888776643 2 23344443211 11122111110 011235999
Q ss_pred EcCcchhhhhccccchhhHHHHHHHHHHHHHhcCCccCC-------CcEEEEEEeCCCC---CchHHHHhcccceeEecC
Q 016911 307 LDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSD-------ELVFVLAATNLPW---ELDAAMLRRLEKRVSFSL 376 (380)
Q Consensus 307 IDEiD~l~~~~~~~~~~~~~~~~i~~~Ll~~ldgl~~~~-------~~VlVIatTN~~~---~Ld~aLlrRF~~~I~~pl 376 (380)
|||+..-.++..+.+...+ ++.+++.. .|+.... .++.+||+++... .+++.++|.|. ++.++.
T Consensus 106 iDDlN~p~~d~ygtq~~iE----lLRQ~i~~-~g~yd~~~~~~~~i~~i~~vaa~~p~~Gr~~is~R~~r~f~-i~~~~~ 179 (272)
T PF12775_consen 106 IDDLNMPQPDKYGTQPPIE----LLRQLIDY-GGFYDRKKLEWKSIEDIQFVAAMNPTGGRNPISPRFLRHFN-ILNIPY 179 (272)
T ss_dssp EETTT-S---TTS--HHHH----HHHHHHHC-SEEECTTTTEEEEECSEEEEEEESSTTT--SHHHHHHTTEE-EEE---
T ss_pred ecccCCCCCCCCCCcCHHH----HHHHHHHh-cCcccCCCcEEEEEeeeEEEEecCCCCCCCCCChHHhhheE-EEEecC
Confidence 9999877666544333222 33333322 1222221 3577889988643 38888888884 688888
Q ss_pred CCC
Q 016911 377 IAL 379 (380)
Q Consensus 377 Pd~ 379 (380)
|+.
T Consensus 180 p~~ 182 (272)
T PF12775_consen 180 PSD 182 (272)
T ss_dssp -TC
T ss_pred CCh
Confidence 875
No 237
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=98.11 E-value=6.5e-06 Score=81.59 Aligned_cols=86 Identities=34% Similarity=0.384 Sum_probs=63.2
Q ss_pred CCccccccchHHHHHHHHHHHhccccCcccccccCCCCceEEEEcCCCCcHHHHHHHHHHhc--CCeEEEEecchhhhhh
Q 016911 205 DVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC--KTTFFNISASSVVSKW 282 (380)
Q Consensus 205 ~~~~~~l~Gl~~~k~~L~~~l~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~l--~~~~v~v~~s~l~~~~ 282 (380)
...-+-++|+.++.++.--.+.+. + ..-..++++|+.||||||||.||-++|++| +.||+.++++++++.-
T Consensus 35 k~~~dG~VGQ~~AReAaGvIv~mi-k------~gk~aGrgiLi~GppgTGKTAlA~gIa~eLG~dvPF~~isgsEiYS~E 107 (450)
T COG1224 35 KFIGDGLVGQEEAREAAGVIVKMI-K------QGKMAGRGILIVGPPGTGKTALAMGIARELGEDVPFVAISGSEIYSLE 107 (450)
T ss_pred eEcCCcccchHHHHHhhhHHHHHH-H------hCcccccEEEEECCCCCcHHHHHHHHHHHhCCCCCceeeccceeeeec
Confidence 334578899999888765433321 1 112456899999999999999999999999 5799999999998776
Q ss_pred ccchHHHHHHHHHHHH
Q 016911 283 RGDSEKLIKVLFELAR 298 (380)
Q Consensus 283 ~ge~e~~l~~lf~~A~ 298 (380)
...++...+. |+.+.
T Consensus 108 ~kKTE~L~qa-~RraI 122 (450)
T COG1224 108 VKKTEALTQA-LRRAI 122 (450)
T ss_pred ccHHHHHHHH-HHHhh
Confidence 6666655443 44443
No 238
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=98.09 E-value=1.8e-05 Score=75.96 Aligned_cols=121 Identities=10% Similarity=-0.002 Sum_probs=76.8
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHhcCCeEEEEecc--------------hhhhhhc---cchHHHHHHHHHHHH----
Q 016911 240 SPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISAS--------------SVVSKWR---GDSEKLIKVLFELAR---- 298 (380)
Q Consensus 240 ~~~~~vLL~GppGtGKT~la~ala~~l~~~~v~v~~s--------------~l~~~~~---ge~e~~l~~lf~~A~---- 298 (380)
.++..+||+||+|+||..+|.++|..+-..--.-.|. ++.--+. .-....++.+.+...
T Consensus 5 ~~~HA~Lf~G~~G~G~~~lA~~~A~~llC~~~~~~Cg~C~sC~~i~~~~HPDl~~i~p~~~~I~id~ir~l~~~l~~~s~ 84 (261)
T PRK05818 5 NKTHPLLLIERKGSFLKPFLYEYLTSIVCTKANGFCKTCESCLKILNGKYNDFYLIFDQKNPIKKEDALSIINKLNRPSV 84 (261)
T ss_pred CCCcceeeeCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHhcCCCCCEEEecCCcccCCHHHHHHHHHHHccCch
Confidence 4667899999999999999999998772110000011 1100000 011223333333221
Q ss_pred h-cCCeEEEEcCcchhhhhccccchhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCCCCCchHHHHhcccceeEecCC
Q 016911 299 H-HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRVSFSLI 377 (380)
Q Consensus 299 ~-~~p~ILfIDEiD~l~~~~~~~~~~~~~~~~i~~~Ll~~ldgl~~~~~~VlVIatTN~~~~Ld~aLlrRF~~~I~~plP 377 (380)
. ....|++||++|.+.. ...+.|+..++ ....++++|.+|+.++.+.+.++||+.. +.|+.+
T Consensus 85 e~~~~KV~II~~ae~m~~-------------~AaNaLLK~LE---EPp~~t~fiLit~~~~~lLpTI~SRCq~-~~~~~~ 147 (261)
T PRK05818 85 ESNGKKIYIIYGIEKLNK-------------QSANSLLKLIE---EPPKNTYGIFTTRNENNILNTILSRCVQ-YVVLSK 147 (261)
T ss_pred hcCCCEEEEeccHhhhCH-------------HHHHHHHHhhc---CCCCCeEEEEEECChHhCchHhhhheee-eecCCh
Confidence 1 2357999999998843 35577888874 4666788999999999999999999854 555554
No 239
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=98.08 E-value=3.2e-05 Score=71.09 Aligned_cols=81 Identities=17% Similarity=0.286 Sum_probs=53.7
Q ss_pred ccccCCCCceEEEEcCCCCcHHHHHHHHHHhc---CCeEEEEecchhhhhhc-----------------------cchHH
Q 016911 235 FTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKWR-----------------------GDSEK 288 (380)
Q Consensus 235 ~~~~~~~~~~vLL~GppGtGKT~la~ala~~l---~~~~v~v~~s~l~~~~~-----------------------ge~e~ 288 (380)
..+++.++.-++++||||+|||+++..++... +...++++..++..... .+...
T Consensus 5 l~GGi~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~~~~~rl~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 84 (209)
T TIGR02237 5 LGGGVERGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEGLSPERFKQIAEDRPERALSNFIVFEVFDFDEQGV 84 (209)
T ss_pred hcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCCHHHHHHHHHhChHHHhcCEEEEECCCHHHHHH
Confidence 34557778889999999999999999887644 56777777754211100 00111
Q ss_pred HHHHHHHHHHhcCCeEEEEcCcchhhh
Q 016911 289 LIKVLFELARHHAPSTIFLDEIDAIIS 315 (380)
Q Consensus 289 ~l~~lf~~A~~~~p~ILfIDEiD~l~~ 315 (380)
.+..+...+....+++|+||-+..+..
T Consensus 85 ~~~~l~~~~~~~~~~lvVIDSis~l~~ 111 (209)
T TIGR02237 85 AIQKTSKFIDRDSASLVVVDSFTALYR 111 (209)
T ss_pred HHHHHHHHHhhcCccEEEEeCcHHHhH
Confidence 233344445555788999999998864
No 240
>PHA00729 NTP-binding motif containing protein
Probab=98.06 E-value=1.3e-05 Score=75.62 Aligned_cols=25 Identities=36% Similarity=0.534 Sum_probs=23.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhcC
Q 016911 243 KGILLFGPPGTGKTMLAKAVATECK 267 (380)
Q Consensus 243 ~~vLL~GppGtGKT~la~ala~~l~ 267 (380)
.+++|+|+|||||||+|.+++..++
T Consensus 18 ~nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 18 VSAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4899999999999999999999875
No 241
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=98.06 E-value=8.9e-06 Score=76.45 Aligned_cols=111 Identities=22% Similarity=0.277 Sum_probs=55.5
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhcCCeEEEEecch-h-hh----hhc----cchHHHHHHHHHHHH--hcCCeEEEEcC
Q 016911 242 WKGILLFGPPGTGKTMLAKAVATECKTTFFNISASS-V-VS----KWR----GDSEKLIKVLFELAR--HHAPSTIFLDE 309 (380)
Q Consensus 242 ~~~vLL~GppGtGKT~la~ala~~l~~~~v~v~~s~-l-~~----~~~----ge~e~~l~~lf~~A~--~~~p~ILfIDE 309 (380)
+..+||||+||+||||+|+.++.. .-++..+.+. . .+ ..+ ...-..+...+..+. .....+|+||.
T Consensus 12 ~~~~liyG~~G~GKtt~a~~~~~~--~~~~~~d~~~~~l~g~~~~~v~~~d~~~~~~~~~d~l~~~~~~~~~ydtVVIDs 89 (220)
T TIGR01618 12 PNMYLIYGKPGTGKTSTIKYLPGK--TLVLSFDMSSKVLIGDENVDIADHDDMPPIQAMVEFYVMQNIQAVKYDNIVIDN 89 (220)
T ss_pred CcEEEEECCCCCCHHHHHHhcCCC--CEEEeccccchhccCCCCCceeecCCCCCHHHHHHHHHHHHhccccCCEEEEec
Confidence 467999999999999999999742 1222222211 0 00 000 011112222222222 23467999999
Q ss_pred cchhhh------hccccc--hhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEe
Q 016911 310 IDAIIS------QRGEAR--SEHEASRRLKTELLIQMDGLTQSDELVFVLAAT 354 (380)
Q Consensus 310 iD~l~~------~~~~~~--~~~~~~~~i~~~Ll~~ldgl~~~~~~VlVIatT 354 (380)
++.+.. .+.... ........+...++..+..+.....+|++++-.
T Consensus 90 I~~l~~~~~~~~~r~~k~~~~~~~~yg~~~~~fl~~l~~L~~~g~nII~tAhe 142 (220)
T TIGR01618 90 ISALQNLWLENIGRAAKNGQPELQHYQKLDLWFLDLLTVLKESNKNIYATAWE 142 (220)
T ss_pred HHHHHHHHHHHHhhhcCCCCcccccHHHHHHHHHHHHHHHHhCCCcEEEEEee
Confidence 998755 121111 011112224444555555555455566665544
No 242
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=98.05 E-value=4.5e-05 Score=72.27 Aligned_cols=124 Identities=16% Similarity=0.123 Sum_probs=68.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhcCCeEEEEecchhhhhhccchHHHHHHHHHHHHhcCCeEEEEcCcchhhhhccccc
Q 016911 242 WKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEAR 321 (380)
Q Consensus 242 ~~~vLL~GppGtGKT~la~ala~~l~~~~v~v~~s~l~~~~~ge~e~~l~~lf~~A~~~~p~ILfIDEiD~l~~~~~~~~ 321 (380)
..+-.+.||+|||||..++.+|..+|.+++.++|++.+.. ..+..++.-+-.. ++-+++||++.+..+.-
T Consensus 32 ~~~~~~~GpagtGKtetik~La~~lG~~~~vfnc~~~~~~------~~l~ril~G~~~~-GaW~cfdefnrl~~~vL--- 101 (231)
T PF12774_consen 32 NLGGALSGPAGTGKTETIKDLARALGRFVVVFNCSEQMDY------QSLSRILKGLAQS-GAWLCFDEFNRLSEEVL--- 101 (231)
T ss_dssp TTEEEEESSTTSSHHHHHHHHHHCTT--EEEEETTSSS-H------HHHHHHHHHHHHH-T-EEEEETCCCSSHHHH---
T ss_pred CCCCCCcCCCCCCchhHHHHHHHHhCCeEEEecccccccH------HHHHHHHHHHhhc-CchhhhhhhhhhhHHHH---
Confidence 3567899999999999999999999999999999886532 3444555433332 57999999998843211
Q ss_pred hhhHHHHHHHHHHHHHhcCCcc----------CCCcEEEEEEeCCC----CCchHHHHhcccceeEecCCCC
Q 016911 322 SEHEASRRLKTELLIQMDGLTQ----------SDELVFVLAATNLP----WELDAAMLRRLEKRVSFSLIAL 379 (380)
Q Consensus 322 ~~~~~~~~i~~~Ll~~ldgl~~----------~~~~VlVIatTN~~----~~Ld~aLlrRF~~~I~~plPd~ 379 (380)
..... .+..+...+..-.. -....-+..|.|.. ..+++.++.-| +-+.+..||+
T Consensus 102 --S~i~~-~i~~i~~al~~~~~~~~~~g~~i~l~~~~~iFiT~np~y~gr~~LP~nLk~lF-Rpvam~~PD~ 169 (231)
T PF12774_consen 102 --SVISQ-QIQSIQDALRAKQKSFTLEGQEIKLNPNCGIFITMNPGYAGRSELPENLKALF-RPVAMMVPDL 169 (231)
T ss_dssp --HHHHH-HHHHHHHHHHCTSSEEEETTCEEE--TT-EEEEEE-B-CCCC--S-HHHCTTE-EEEE--S--H
T ss_pred --HHHHH-HHHHHHHhhcccccccccCCCEEEEccceeEEEeeccccCCcccCCHhHHHHh-heeEEeCCCH
Confidence 11111 11222222211000 01224456677743 35888888877 4577777774
No 243
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=98.04 E-value=4.9e-06 Score=82.53 Aligned_cols=128 Identities=27% Similarity=0.319 Sum_probs=84.7
Q ss_pred CCCccccccchHHHHHHHHHHHhccccCcccccccCCCCceEEEEcCCCCcHHHHHHHHHHhc---CCeEEEEecchhhh
Q 016911 204 PDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVS 280 (380)
Q Consensus 204 p~~~~~~l~Gl~~~k~~L~~~l~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~l---~~~~v~v~~s~l~~ 280 (380)
+...|+.+++.+...+.+.+.... ...-...+||.|..||||-.+|++....+ +.||+.+||..+-.
T Consensus 199 ~~~~F~~~v~~S~~mk~~v~qA~k----------~AmlDAPLLI~GeTGTGKdLlAkaCH~~S~R~~~pFlalNCA~lPe 268 (511)
T COG3283 199 DVSGFEQIVAVSPKMKHVVEQAQK----------LAMLDAPLLITGETGTGKDLLAKACHLASPRHSKPFLALNCASLPE 268 (511)
T ss_pred cccchHHHhhccHHHHHHHHHHHH----------hhccCCCeEEecCCCchHHHHHHHHhhcCcccCCCeeEeecCCCch
Confidence 445688888888777666543221 11223579999999999999999998877 67999999987643
Q ss_pred hhc-----cch--HHHHHHHHHHHHhcCCeEEEEcCcchhhhhccccchhhHHHHHHHHHHHHHhcCCc--------cCC
Q 016911 281 KWR-----GDS--EKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT--------QSD 345 (380)
Q Consensus 281 ~~~-----ge~--e~~l~~lf~~A~~~~p~ILfIDEiD~l~~~~~~~~~~~~~~~~i~~~Ll~~ldgl~--------~~~ 345 (380)
... |.. .+-...+|+.|. ++.+|+|||..+.+. ++..|+..+..-. ...
T Consensus 269 ~~aEsElFG~apg~~gk~GffE~An---gGTVlLDeIgEmSp~-------------lQaKLLRFL~DGtFRRVGee~Ev~ 332 (511)
T COG3283 269 DAAESELFGHAPGDEGKKGFFEQAN---GGTVLLDEIGEMSPR-------------LQAKLLRFLNDGTFRRVGEDHEVH 332 (511)
T ss_pred hHhHHHHhcCCCCCCCccchhhhcc---CCeEEeehhhhcCHH-------------HHHHHHHHhcCCceeecCCcceEE
Confidence 321 111 123345777777 579999999888653 3444555443211 112
Q ss_pred CcEEEEEEeCCC
Q 016911 346 ELVFVLAATNLP 357 (380)
Q Consensus 346 ~~VlVIatTN~~ 357 (380)
-+|.||+||..+
T Consensus 333 vdVRVIcatq~n 344 (511)
T COG3283 333 VDVRVICATQVN 344 (511)
T ss_pred EEEEEEeccccc
Confidence 358899999774
No 244
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.04 E-value=1.7e-05 Score=72.59 Aligned_cols=44 Identities=43% Similarity=0.570 Sum_probs=31.9
Q ss_pred cchHHHHHHHHHHHhccccCcccccccCCCCceEEEEcCCCCcHHHHHHHHHHhcC
Q 016911 212 KGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECK 267 (380)
Q Consensus 212 ~Gl~~~k~~L~~~l~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~l~ 267 (380)
.|.++..+.|.+.+.. .+...++++||.|+|||+|++.+...+.
T Consensus 2 ~gR~~el~~l~~~l~~------------~~~~~~~l~G~rg~GKTsLl~~~~~~~~ 45 (234)
T PF01637_consen 2 FGREKELEKLKELLES------------GPSQHILLYGPRGSGKTSLLKEFINELK 45 (234)
T ss_dssp -S-HHHHHHHHHCHHH--------------SSEEEEEESTTSSHHHHHHHHHHHCT
T ss_pred CCHHHHHHHHHHHHHh------------hcCcEEEEEcCCcCCHHHHHHHHHHHhh
Confidence 4666666666655422 2457899999999999999999999883
No 245
>PF05729 NACHT: NACHT domain
Probab=98.03 E-value=6.7e-05 Score=65.16 Aligned_cols=23 Identities=30% Similarity=0.592 Sum_probs=21.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhc
Q 016911 244 GILLFGPPGTGKTMLAKAVATEC 266 (380)
Q Consensus 244 ~vLL~GppGtGKT~la~ala~~l 266 (380)
-++|+|+||+|||++++.++..+
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~ 24 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQL 24 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHH
Confidence 57899999999999999999877
No 246
>KOG0478 consensus DNA replication licensing factor, MCM4 component [Replication, recombination and repair]
Probab=98.01 E-value=1.1e-05 Score=85.37 Aligned_cols=156 Identities=24% Similarity=0.203 Sum_probs=79.3
Q ss_pred cccchHHHHHHHHHHHhccccCcccccc--cCCCCceEEEEcCCCCcHHHHHHHHHHhcCCeEEEE-ecchhhhh--hc-
Q 016911 210 SIKGLENAKRLLKEAVVMPIKYPKYFTG--LLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNI-SASSVVSK--WR- 283 (380)
Q Consensus 210 ~l~Gl~~~k~~L~~~l~~~l~~~~~~~~--~~~~~~~vLL~GppGtGKT~la~ala~~l~~~~v~v-~~s~l~~~--~~- 283 (380)
.|.|++.+|+.+.-.+.- .....+.. ......++||+|.||||||.+++.+++.+..-.+.- ..+.-++. |+
T Consensus 430 sIye~edvKkglLLqLfG--Gt~k~~~~~~~~R~~INILL~GDPGtsKSqlLqyv~~l~pRg~yTSGkGsSavGLTayVt 507 (804)
T KOG0478|consen 430 SIYELEDVKKGLLLQLFG--GTRKEDEKSGRFRGDINILLVGDPGTSKSQLLQYCHRLLPRGVYTSGKGSSAVGLTAYVT 507 (804)
T ss_pred hhhcccchhhhHHHHHhc--CCcccccccccccccceEEEecCCCcCHHHHHHHHHHhCCcceeecCCccchhcceeeEE
Confidence 556777777666532211 11111111 133447899999999999999999999885443321 11111111 00
Q ss_pred --cchHHHHHHHHHHHHhcCCeEEEEcCcchhhhhccccchhhHHHHHHHHHHHHHhcCC-ccCCCcEEEEEEeCCCC--
Q 016911 284 --GDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGL-TQSDELVFVLAATNLPW-- 358 (380)
Q Consensus 284 --ge~e~~l~~lf~~A~~~~p~ILfIDEiD~l~~~~~~~~~~~~~~~~i~~~Ll~~ldgl-~~~~~~VlVIatTN~~~-- 358 (380)
+++.+.+-+ -........+|=+|||+|++..... ..-+++.++- ++--..-|+ ..-+...-|||++|...
T Consensus 508 rd~dtkqlVLe-sGALVLSD~GiCCIDEFDKM~dStr--SvLhEvMEQQ--TvSIAKAGII~sLNAR~SVLAaANP~~sk 582 (804)
T KOG0478|consen 508 KDPDTRQLVLE-SGALVLSDNGICCIDEFDKMSDSTR--SVLHEVMEQQ--TLSIAKAGIIASLNARCSVLAAANPIRSK 582 (804)
T ss_pred ecCccceeeee-cCcEEEcCCceEEchhhhhhhHHHH--HHHHHHHHHh--hhhHhhcceeeeccccceeeeeecccccc
Confidence 011110000 0011123457889999999944321 1112211110 011111122 22234456899999554
Q ss_pred -----------CchHHHHhccccee
Q 016911 359 -----------ELDAAMLRRLEKRV 372 (380)
Q Consensus 359 -----------~Ld~aLlrRF~~~I 372 (380)
.|++.|++||+-+.
T Consensus 583 ynp~k~i~eNI~LpptLLSRFDLIy 607 (804)
T KOG0478|consen 583 YNPNKSIIENINLPPTLLSRFDLIF 607 (804)
T ss_pred CCCCCchhhccCCChhhhhhhcEEE
Confidence 28999999998643
No 247
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.01 E-value=6.4e-05 Score=73.52 Aligned_cols=100 Identities=21% Similarity=0.336 Sum_probs=60.5
Q ss_pred cccchHHHHHHHHHHHhccccCcccccccCCCCceEEEEcCCCCcHHHHHHHHHHhc---------CCeEEEEecchh--
Q 016911 210 SIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---------KTTFFNISASSV-- 278 (380)
Q Consensus 210 ~l~Gl~~~k~~L~~~l~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~l---------~~~~v~v~~s~l-- 278 (380)
..+|...+.+.+... ...+.+|+. ....++||+|++|.|||++++.++..- ..|++.+.+..-
T Consensus 35 rWIgY~~A~~~L~~L-~~Ll~~P~~-----~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~ 108 (302)
T PF05621_consen 35 RWIGYPRAKEALDRL-EELLEYPKR-----HRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPD 108 (302)
T ss_pred CeecCHHHHHHHHHH-HHHHhCCcc-----cCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCC
Confidence 446666665555432 222333321 233689999999999999999998654 246666665321
Q ss_pred ----hh--------hhc--cchHHHHHHHHHHHHhcCCeEEEEcCcchhhh
Q 016911 279 ----VS--------KWR--GDSEKLIKVLFELARHHAPSTIFLDEIDAIIS 315 (380)
Q Consensus 279 ----~~--------~~~--ge~e~~l~~lf~~A~~~~p~ILfIDEiD~l~~ 315 (380)
.. .+. ....+....+....+.....+|+|||++.+..
T Consensus 109 ~~~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLa 159 (302)
T PF05621_consen 109 ERRFYSAILEALGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLA 159 (302)
T ss_pred hHHHHHHHHHHhCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhc
Confidence 11 110 11233333445566666788999999999754
No 248
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=97.98 E-value=6.3e-05 Score=67.40 Aligned_cols=71 Identities=23% Similarity=0.323 Sum_probs=44.3
Q ss_pred EEEEcCCCCcHHHHHHHHHHhc---CCeEEEEecchhhhhhc------c-----------------------chH-----
Q 016911 245 ILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKWR------G-----------------------DSE----- 287 (380)
Q Consensus 245 vLL~GppGtGKT~la~ala~~l---~~~~v~v~~s~l~~~~~------g-----------------------e~e----- 287 (380)
+++.||||||||+++..++... +.+..+++..+-..... | ..+
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e~~~~~~~~~~~~~g~~~~~l~~~g~l~~~d~~~~~~s~~~~~~~~ 81 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLEESPEELIENAESLGWDLERLEDEGLLAIVDADPDEIGPAESSLRL 81 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHcCCChHHHHhcCCeEEEecCccccchhhhhhhH
Confidence 6899999999999998876644 55665555422111100 0 000
Q ss_pred HHHHHHHHHHHhcCCeEEEEcCcchhhh
Q 016911 288 KLIKVLFELARHHAPSTIFLDEIDAIIS 315 (380)
Q Consensus 288 ~~l~~lf~~A~~~~p~ILfIDEiD~l~~ 315 (380)
.....+...+....|.+++||++..+..
T Consensus 82 ~~~~~i~~~~~~~~~~~lviD~~~~~~~ 109 (187)
T cd01124 82 ELIQRLKDAIEEFKAKRVVIDSVSGLLL 109 (187)
T ss_pred HHHHHHHHHHHHhCCCEEEEeCcHHHhh
Confidence 1123444555566789999999988754
No 249
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=97.98 E-value=6.8e-06 Score=87.47 Aligned_cols=121 Identities=14% Similarity=0.105 Sum_probs=82.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhcCC--eEEEEecchhhhhhccch--HHHH--------HHHHHHHHhcCCeEEEEcCc
Q 016911 243 KGILLFGPPGTGKTMLAKAVATECKT--TFFNISASSVVSKWRGDS--EKLI--------KVLFELARHHAPSTIFLDEI 310 (380)
Q Consensus 243 ~~vLL~GppGtGKT~la~ala~~l~~--~~v~v~~s~l~~~~~ge~--e~~l--------~~lf~~A~~~~p~ILfIDEi 310 (380)
.+++|-|++|+|||+++++++..+.. ||+.+..+.-....+|.. +..+ ..++..|. .+||||||+
T Consensus 26 gGv~i~g~~G~~ks~~~r~l~~llp~~~p~r~~p~~~t~~~L~Gg~Dl~~~l~~g~~~~~pGlla~Ah---~GvL~lDe~ 102 (584)
T PRK13406 26 GGVVLRARAGPVRDRWLAALRALLPAGTPLRRLPPGIADDRLLGGLDLAATLRAGRPVAQRGLLAEAD---GGVLVLAMA 102 (584)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhcCCCCCcccCCCCCcHHHccCCchHHhHhhcCCcCCCCCceeecc---CCEEEecCc
Confidence 58999999999999999999999854 888777655444455443 2211 11222222 479999999
Q ss_pred chhhhhccccchhhHHHHHHHHHHHHHhcCC----------ccCCCcEEEEEEeCCC---CCchHHHHhcccceeEecCC
Q 016911 311 DAIISQRGEARSEHEASRRLKTELLIQMDGL----------TQSDELVFVLAATNLP---WELDAAMLRRLEKRVSFSLI 377 (380)
Q Consensus 311 D~l~~~~~~~~~~~~~~~~i~~~Ll~~ldgl----------~~~~~~VlVIatTN~~---~~Ld~aLlrRF~~~I~~plP 377 (380)
..+.+ .+++.|+.-|+.- .......++|+|-|.. ..|.+++++||+..+.++.|
T Consensus 103 n~~~~-------------~~~~aLleame~G~vtIeR~G~s~~~Pa~F~LIat~~~~~~~~~L~~~lLDRf~l~v~v~~~ 169 (584)
T PRK13406 103 ERLEP-------------GTAARLAAALDTGEVRLERDGLALRLPARFGLVALDEGAEEDERAPAALADRLAFHLDLDGL 169 (584)
T ss_pred ccCCH-------------HHHHHHHHHHhCCcEEEEECCcEEecCCCcEEEecCCChhcccCCCHHhHhheEEEEEcCCC
Confidence 88743 3566677766531 1123457778874432 23999999999999998877
Q ss_pred CC
Q 016911 378 AL 379 (380)
Q Consensus 378 d~ 379 (380)
+.
T Consensus 170 ~~ 171 (584)
T PRK13406 170 AL 171 (584)
T ss_pred Ch
Confidence 53
No 250
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=97.96 E-value=2.9e-05 Score=79.17 Aligned_cols=91 Identities=22% Similarity=0.353 Sum_probs=59.1
Q ss_pred cccchHHHHHHHHHHHhccccCcccccccCCCCceEEEEcCCCCcHHHHHHHHHHhc---CCeEEEEecchhhhhhccch
Q 016911 210 SIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKWRGDS 286 (380)
Q Consensus 210 ~l~Gl~~~k~~L~~~l~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~l---~~~~v~v~~s~l~~~~~ge~ 286 (380)
.++|.+.....+...+.. .......++++|.+|+||+++|+++.... +.+|+.++|..+......
T Consensus 140 ~lig~s~~~~~~~~~i~~----------~~~~~~~vli~ge~g~gk~~~a~~ih~~s~~~~~~~i~~~c~~~~~~~~~-- 207 (441)
T PRK10365 140 GMVGKSPAMQHLLSEIAL----------VAPSEATVLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAALNESLLE-- 207 (441)
T ss_pred ceEecCHHHHHHHHHHhh----------ccCCCCeEEEEecCCCCHHHHHHHHHHcCCCCCCCeeeeeCCCCCHHHHH--
Confidence 456666655555443322 12344789999999999999999998765 579999999876432210
Q ss_pred HHHHHHHHH---------------HHHhcCCeEEEEcCcchhhhh
Q 016911 287 EKLIKVLFE---------------LARHHAPSTIFLDEIDAIISQ 316 (380)
Q Consensus 287 e~~l~~lf~---------------~A~~~~p~ILfIDEiD~l~~~ 316 (380)
..+|. ......+++|||||++.+...
T Consensus 208 ----~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~ldei~~l~~~ 248 (441)
T PRK10365 208 ----SELFGHEKGAFTGADKRREGRFVEADGGTLFLDEIGDISPM 248 (441)
T ss_pred ----HHhcCCCCCCcCCCCcCCCCceeECCCCEEEEeccccCCHH
Confidence 11111 011223689999999999653
No 251
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=97.95 E-value=7.3e-05 Score=73.10 Aligned_cols=118 Identities=14% Similarity=0.103 Sum_probs=73.3
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHhcCCeEE--EEec--------------chhhhhh-cc--chHHHHHHHHHHHH--
Q 016911 240 SPWKGILLFGPPGTGKTMLAKAVATECKTTFF--NISA--------------SSVVSKW-RG--DSEKLIKVLFELAR-- 298 (380)
Q Consensus 240 ~~~~~vLL~GppGtGKT~la~ala~~l~~~~v--~v~~--------------s~l~~~~-~g--e~e~~l~~lf~~A~-- 298 (380)
+.+..+||+|| .||+++|+.+|..+...-- .-.| +++.--. .| -.-..++.+...+.
T Consensus 22 rl~hAyLf~G~--~G~~~~A~~~A~~llC~~~~~~~~Cg~C~~C~~i~~~~HPD~~~i~p~~~~I~idqIR~l~~~~~~~ 99 (290)
T PRK07276 22 RLNHAYLFSGD--FASFEMALFLAQSLFCEQKEGVLPCGHCRSCRLIEQGEFSDVTVIEPQGQVIKTDTIRELVKNFSQS 99 (290)
T ss_pred CcceeeeeeCC--ccHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCeeeecCCCCcCCHHHHHHHHHHHhhC
Confidence 34568999996 6899999999987722100 0001 1110000 01 11234444443333
Q ss_pred --hcCCeEEEEcCcchhhhhccccchhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCCCCCchHHHHhcccceeEecC
Q 016911 299 --HHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRVSFSL 376 (380)
Q Consensus 299 --~~~p~ILfIDEiD~l~~~~~~~~~~~~~~~~i~~~Ll~~ldgl~~~~~~VlVIatTN~~~~Ld~aLlrRF~~~I~~pl 376 (380)
.....|++||++|.+.. ...+.|++.++ ..+.++++|.+|+.++.+-|+++||+. .+.|+.
T Consensus 100 p~~~~~kV~II~~ad~m~~-------------~AaNaLLKtLE---EPp~~t~~iL~t~~~~~lLpTI~SRcq-~i~f~~ 162 (290)
T PRK07276 100 GYEGKQQVFIIKDADKMHV-------------NAANSLLKVIE---EPQSEIYIFLLTNDENKVLPTIKSRTQ-IFHFPK 162 (290)
T ss_pred cccCCcEEEEeehhhhcCH-------------HHHHHHHHHhc---CCCCCeEEEEEECChhhCchHHHHcce-eeeCCC
Confidence 22346999999999843 24567888884 455567888899999999999999985 466654
No 252
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.94 E-value=5.8e-05 Score=76.25 Aligned_cols=113 Identities=19% Similarity=0.287 Sum_probs=62.4
Q ss_pred cCCCCceEEEEcCCCCcHHHHHHHHHHhc----C-CeEEEEecchhh----------hhhcc------chHHHHHHHHHH
Q 016911 238 LLSPWKGILLFGPPGTGKTMLAKAVATEC----K-TTFFNISASSVV----------SKWRG------DSEKLIKVLFEL 296 (380)
Q Consensus 238 ~~~~~~~vLL~GppGtGKT~la~ala~~l----~-~~~v~v~~s~l~----------~~~~g------e~e~~l~~lf~~ 296 (380)
.+..+..++|.||+|+||||++..+|..+ + ..+..+....+. ....+ .....+....
T Consensus 133 ~~~~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l-- 210 (374)
T PRK14722 133 LMERGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLAL-- 210 (374)
T ss_pred cccCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHH--
Confidence 34566789999999999999999999764 3 244444433321 00001 0111112222
Q ss_pred HHhcCCeEEEEcCcchhhhhccccchhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCCCCCchHHH
Q 016911 297 ARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAM 364 (380)
Q Consensus 297 A~~~~p~ILfIDEiD~l~~~~~~~~~~~~~~~~i~~~Ll~~ldgl~~~~~~VlVIatTN~~~~Ld~aL 364 (380)
......++|+||.......+ ..+.+.+..+.........++|+.+|+..+.++..+
T Consensus 211 ~~l~~~DlVLIDTaG~~~~d------------~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi 266 (374)
T PRK14722 211 AELRNKHMVLIDTIGMSQRD------------RTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVV 266 (374)
T ss_pred HHhcCCCEEEEcCCCCCccc------------HHHHHHHHHHhccCCCCeEEEEecCccChHHHHHHH
Confidence 22334689999999644211 112233444444333345577888888776666443
No 253
>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite.; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A.
Probab=97.92 E-value=1.1e-06 Score=87.50 Aligned_cols=149 Identities=23% Similarity=0.250 Sum_probs=69.6
Q ss_pred ccccchHHHHHHHHHHHhccccCcccccccCCCCceEEEEcCCCCcHHHHHHHHHHhcCCeEEEEecc----hhhhhhcc
Q 016911 209 ESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISAS----SVVSKWRG 284 (380)
Q Consensus 209 ~~l~Gl~~~k~~L~~~l~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~l~~~~v~v~~s----~l~~~~~g 284 (380)
..|.|.+.+|..+.-.+.........-....+...++||.|.||+|||.|.+.+++.....++..... .+......
T Consensus 24 P~i~g~~~iK~aill~L~~~~~~~~~~~~~~r~~ihiLlvGdpg~gKS~ll~~~~~~~pr~v~~~g~~~s~~gLta~~~~ 103 (331)
T PF00493_consen 24 PSIYGHEDIKKAILLQLFGGVEKNDPDGTRIRGNIHILLVGDPGTGKSQLLKYVAKLAPRSVYTSGKGSSAAGLTASVSR 103 (331)
T ss_dssp STTTT-HHHHHHHCCCCTT--SCCCCT-TEE--S--EEEECSCHHCHHHHHHCCCCT-SSEEEEECCGSTCCCCCEEECC
T ss_pred CcCcCcHHHHHHHHHHHHhccccccccccccccccceeeccchhhhHHHHHHHHHhhCCceEEECCCCcccCCccceecc
Confidence 35778777766554211111110000001134457999999999999999999987775554332111 11111100
Q ss_pred ---chHHHHH-HHHHHHHhcCCeEEEEcCcchhhhhccccchhhHHHHHHHHHHHHHhcC----Ccc------CCCcEEE
Q 016911 285 ---DSEKLIK-VLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDG----LTQ------SDELVFV 350 (380)
Q Consensus 285 ---e~e~~l~-~lf~~A~~~~p~ILfIDEiD~l~~~~~~~~~~~~~~~~i~~~Ll~~ldg----l~~------~~~~VlV 350 (380)
..+..+. ..+-.| .++|.+|||+|.+-.+ ....|...|+. +.. -+....|
T Consensus 104 d~~~~~~~leaGalvla---d~GiccIDe~dk~~~~-------------~~~~l~eaMEqq~isi~kagi~~~l~ar~sv 167 (331)
T PF00493_consen 104 DPVTGEWVLEAGALVLA---DGGICCIDEFDKMKED-------------DRDALHEAMEQQTISIAKAGIVTTLNARCSV 167 (331)
T ss_dssp CGGTSSECEEE-HHHHC---TTSEEEECTTTT--CH-------------HHHHHHHHHHCSCEEECTSSSEEEEE---EE
T ss_pred ccccceeEEeCCchhcc---cCceeeecccccccch-------------HHHHHHHHHHcCeeccchhhhcccccchhhh
Confidence 0000111 122222 3589999999998432 12234444432 111 1234668
Q ss_pred EEEeCCCC-------------CchHHHHhcccceeE
Q 016911 351 LAATNLPW-------------ELDAAMLRRLEKRVS 373 (380)
Q Consensus 351 IatTN~~~-------------~Ld~aLlrRF~~~I~ 373 (380)
+|++|... .+++.|++|||-++.
T Consensus 168 laa~NP~~g~~~~~~~~~~ni~l~~~LLSRFDLif~ 203 (331)
T PF00493_consen 168 LAAANPKFGRYDPNKSLSENINLPPPLLSRFDLIFL 203 (331)
T ss_dssp EEEE--TT--S-TTS-CGCCT-S-CCCHCC-SEEEC
T ss_pred HHHHhhhhhhcchhhhhHHhcccchhhHhhcCEEEE
Confidence 99998876 378899999997644
No 254
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
Probab=97.91 E-value=1.3e-05 Score=86.01 Aligned_cols=156 Identities=24% Similarity=0.230 Sum_probs=84.5
Q ss_pred cccccchHHHHHHHHHHHhccccCcccccc--cCCCCceEEEEcCCCCcHHHHHHHHHHhcCCeEEEE-ecchhh---hh
Q 016911 208 WESIKGLENAKRLLKEAVVMPIKYPKYFTG--LLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNI-SASSVV---SK 281 (380)
Q Consensus 208 ~~~l~Gl~~~k~~L~~~l~~~l~~~~~~~~--~~~~~~~vLL~GppGtGKT~la~ala~~l~~~~v~v-~~s~l~---~~ 281 (380)
...|.|.+.+|+.+.-.+.- ...+.... .+....|+||.|.||+|||.|.+.+++.+...++.- .++.-. ..
T Consensus 285 aPsIyG~e~VKkAilLqLfg--Gv~k~~~~g~~iRGDInILLvGDPgtaKSqlLk~v~~~aPr~vytsgkgss~~GLTAa 362 (682)
T COG1241 285 APSIYGHEDVKKAILLQLFG--GVKKNLPDGTRIRGDIHILLVGDPGTAKSQLLKYVAKLAPRGVYTSGKGSSAAGLTAA 362 (682)
T ss_pred cccccCcHHHHHHHHHHhcC--CCcccCCCCcccccceeEEEcCCCchhHHHHHHHHHhhCCceEEEccccccccCceeE
Confidence 45788999988877633321 22222111 144457999999999999999999999886655432 222111 11
Q ss_pred hccch---HHHHHHHHHHHHhcCCeEEEEcCcchhhhhccccchhhHHHHHHHHHHHHHhcCCc------cCCCcEEEEE
Q 016911 282 WRGDS---EKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT------QSDELVFVLA 352 (380)
Q Consensus 282 ~~ge~---e~~l~~lf~~A~~~~p~ILfIDEiD~l~~~~~~~~~~~~~~~~i~~~Ll~~ldgl~------~~~~~VlVIa 352 (380)
..... +..+.. ......+++|.+|||+|++-.... . .+....-++.-.+. .-+....|+|
T Consensus 363 v~rd~~tge~~Lea--GALVlAD~Gv~cIDEfdKm~~~dr-----~----aihEaMEQQtIsIaKAGI~atLnARcsvLA 431 (682)
T COG1241 363 VVRDKVTGEWVLEA--GALVLADGGVCCIDEFDKMNEEDR-----V----AIHEAMEQQTISIAKAGITATLNARCSVLA 431 (682)
T ss_pred EEEccCCCeEEEeC--CEEEEecCCEEEEEeccCCChHHH-----H----HHHHHHHhcEeeecccceeeecchhhhhhh
Confidence 11000 000000 001123468999999998732210 1 11111111111111 1123355889
Q ss_pred EeCCCC-------------CchHHHHhcccceeEecCCC
Q 016911 353 ATNLPW-------------ELDAAMLRRLEKRVSFSLIA 378 (380)
Q Consensus 353 tTN~~~-------------~Ld~aLlrRF~~~I~~plPd 378 (380)
|+|... +++++|++|||-. |.++|
T Consensus 432 AaNP~~Gryd~~~~~~enI~l~~~lLSRFDLi--fvl~D 468 (682)
T COG1241 432 AANPKFGRYDPKKTVAENINLPAPLLSRFDLI--FVLKD 468 (682)
T ss_pred hhCCCCCcCCCCCCHHHhcCCChhHHhhCCee--EEecC
Confidence 998886 2889999999854 44443
No 255
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=97.88 E-value=2.4e-05 Score=64.95 Aligned_cols=23 Identities=48% Similarity=0.908 Sum_probs=20.6
Q ss_pred EEEEcCCCCcHHHHHHHHHHhcC
Q 016911 245 ILLFGPPGTGKTMLAKAVATECK 267 (380)
Q Consensus 245 vLL~GppGtGKT~la~ala~~l~ 267 (380)
|.|+||||+|||++++.++..+.
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~ 23 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLL 23 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHH
Confidence 57999999999999999988774
No 256
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=97.88 E-value=8e-05 Score=69.39 Aligned_cols=41 Identities=27% Similarity=0.433 Sum_probs=33.2
Q ss_pred cccCCCCceEEEEcCCCCcHHHHHHHHHHhc---CCeEEEEecc
Q 016911 236 TGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISAS 276 (380)
Q Consensus 236 ~~~~~~~~~vLL~GppGtGKT~la~ala~~l---~~~~v~v~~s 276 (380)
.+.+.++.-++++|+||+|||+++..+|... +.+.+++++.
T Consensus 17 ~GGi~~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e 60 (225)
T PRK09361 17 GGGFERGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTE 60 (225)
T ss_pred cCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 3456777889999999999999999998744 6677777765
No 257
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=97.86 E-value=7.4e-05 Score=78.58 Aligned_cols=64 Identities=20% Similarity=0.168 Sum_probs=46.7
Q ss_pred CCCccccccchHHHHHHHHHHHhccccCcccccccCCCCceEEEEcCCCCcHHHHHHHHHHhcCCeEEEEe
Q 016911 204 PDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNIS 274 (380)
Q Consensus 204 p~~~~~~l~Gl~~~k~~L~~~l~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~l~~~~v~v~ 274 (380)
...+.++|.....-+++++.++...... ..+.+-+||+|||||||||+++.+|++++..+.+-.
T Consensus 14 ~P~~~~eLavhkkKv~eV~~wl~~~~~~-------~~~~~iLlLtGP~G~GKtttv~~La~elg~~v~Ew~ 77 (519)
T PF03215_consen 14 APKTLDELAVHKKKVEEVRSWLEEMFSG-------SSPKRILLLTGPSGCGKTTTVKVLAKELGFEVQEWI 77 (519)
T ss_pred CCCCHHHhhccHHHHHHHHHHHHHHhcc-------CCCcceEEEECCCCCCHHHHHHHHHHHhCCeeEEec
Confidence 4455677777777777777766542211 123457889999999999999999999988877643
No 258
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=97.86 E-value=0.00011 Score=81.04 Aligned_cols=149 Identities=21% Similarity=0.302 Sum_probs=101.1
Q ss_pred cccccch-HHHHHHHHHHHhccccCcccccccCCCCceEEEEcCCCCcHHHHHHHHHHhc----------CCeEEEEecc
Q 016911 208 WESIKGL-ENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC----------KTTFFNISAS 276 (380)
Q Consensus 208 ~~~l~Gl-~~~k~~L~~~l~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~l----------~~~~v~v~~s 276 (380)
++.++|. ++.++.+.+.+.. +..++-+|.|.||+|||.++.-+|+.. +..++.++..
T Consensus 185 ldPvigr~deeirRvi~iL~R------------rtk~NPvLVG~~gvgktaiv~gla~ri~~G~vp~~l~~~~l~~l~~g 252 (898)
T KOG1051|consen 185 LDPVIGRHDEEIRRVIEILSR------------KTKNNPVLVGEPGVGKTAIVEGLAQRIATGDVPETLKDKKLIALDFG 252 (898)
T ss_pred CCCccCCchHHHHHHHHHHhc------------cCCCCceEEecCCCCchhHHHHHHHHhhcCCCCccccccceEEEEhh
Confidence 5667776 6666666655533 222789999999999999999999876 3456666766
Q ss_pred hhh--hhhccchHHHHHHHHHHHH-hcCCeEEEEcCcchhhhhccccchhhHHHHHHHHHHHHHhcCCccCCCcEEEEEE
Q 016911 277 SVV--SKWRGDSEKLIKVLFELAR-HHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAA 353 (380)
Q Consensus 277 ~l~--~~~~ge~e~~l~~lf~~A~-~~~p~ILfIDEiD~l~~~~~~~~~~~~~~~~i~~~Ll~~ldgl~~~~~~VlVIat 353 (380)
.+. ..+.|+.+.+++.+...+. ...+.||||||++.+.+.....+ .-...+.|-..+ ..+.+.+|+|
T Consensus 253 ~l~aGa~~rge~E~rlk~l~k~v~~~~~gvILfigelh~lvg~g~~~~-----~~d~~nlLkp~L-----~rg~l~~IGa 322 (898)
T KOG1051|consen 253 SLVAGAKRRGEFEERLKELLKEVESGGGGVILFLGELHWLVGSGSNYG-----AIDAANLLKPLL-----ARGGLWCIGA 322 (898)
T ss_pred hcccCcccchHHHHHHHHHHHHHhcCCCcEEEEecceeeeecCCCcch-----HHHHHHhhHHHH-----hcCCeEEEec
Confidence 544 3467889999999999888 44667999999999987644311 112223233222 2222778887
Q ss_pred eCCCC-----CchHHHHhcccceeEecCCCC
Q 016911 354 TNLPW-----ELDAAMLRRLEKRVSFSLIAL 379 (380)
Q Consensus 354 TN~~~-----~Ld~aLlrRF~~~I~~plPd~ 379 (380)
|.... +-+|++-+||+- +.++.|+.
T Consensus 323 tT~e~Y~k~iekdPalErrw~l-~~v~~pS~ 352 (898)
T KOG1051|consen 323 TTLETYRKCIEKDPALERRWQL-VLVPIPSV 352 (898)
T ss_pred ccHHHHHHHHhhCcchhhCcce-eEeccCcc
Confidence 76322 367999999974 67777763
No 259
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=97.86 E-value=0.00018 Score=67.92 Aligned_cols=79 Identities=22% Similarity=0.331 Sum_probs=48.4
Q ss_pred cccCCCCceEEEEcCCCCcHHHHHHHHHHhc---CCeEEEEecchhhhhhc-----------------------------
Q 016911 236 TGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKWR----------------------------- 283 (380)
Q Consensus 236 ~~~~~~~~~vLL~GppGtGKT~la~ala~~l---~~~~v~v~~s~l~~~~~----------------------------- 283 (380)
.+.+.++..+++.|+||||||+++..++..+ +....+++..+-.....
T Consensus 18 ~ggi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~e~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~ 97 (230)
T PRK08533 18 GGGIPAGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSTQLTTTEFIKQMMSLGYDINKKLISGKLLYIPVYPLLS 97 (230)
T ss_pred CCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHhCCchHHHhhcCcEEEEEeccccc
Confidence 3346777889999999999999975554433 44555555431111000
Q ss_pred --cchHHHHHHHHHHHHhcCCeEEEEcCcchhh
Q 016911 284 --GDSEKLIKVLFELARHHAPSTIFLDEIDAII 314 (380)
Q Consensus 284 --ge~e~~l~~lf~~A~~~~p~ILfIDEiD~l~ 314 (380)
.+.+..+..+...+....|.++++||+-.+.
T Consensus 98 ~~~~~~~~l~~il~~~~~~~~~~lVIDe~t~~l 130 (230)
T PRK08533 98 GNSEKRKFLKKLMNTRRFYEKDVIIIDSLSSLI 130 (230)
T ss_pred ChHHHHHHHHHHHHHHHhcCCCEEEEECccHHh
Confidence 0012333444555555568899999998765
No 260
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=97.85 E-value=8.5e-05 Score=73.36 Aligned_cols=149 Identities=20% Similarity=0.289 Sum_probs=87.0
Q ss_pred cccchHHHHHHHHHHHhccccCcccccccCCCCceEEEEcCCCCcHHHHHHHHH---HhcCCeEEEEecchhhhh-----
Q 016911 210 SIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVA---TECKTTFFNISASSVVSK----- 281 (380)
Q Consensus 210 ~l~Gl~~~k~~L~~~l~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala---~~l~~~~v~v~~s~l~~~----- 281 (380)
.+.|..+..+.+.+.+..... ...+..+++.||.|+|||++....- ++.+-+++.+......-.
T Consensus 25 ~l~g~~~~~~~l~~~lkqt~~--------~gEsnsviiigprgsgkT~li~~~Ls~~q~~~E~~l~v~Lng~~~~dk~al 96 (408)
T KOG2228|consen 25 NLFGVQDEQKHLSELLKQTIL--------HGESNSVIIIGPRGSGKTILIDTRLSDIQENGENFLLVRLNGELQTDKIAL 96 (408)
T ss_pred ceeehHHHHHHHHHHHHHHHH--------hcCCCceEEEccCCCCceEeeHHHHhhHHhcCCeEEEEEECccchhhHHHH
Confidence 456666666666665544322 2445789999999999999765442 355666666554322111
Q ss_pred ----------------hccchHHHHHHHHHHHHh-----cCCeEEEEcCcchhhhhccccchhhHHHHHHHHHHHHHhcC
Q 016911 282 ----------------WRGDSEKLIKVLFELARH-----HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDG 340 (380)
Q Consensus 282 ----------------~~ge~e~~l~~lf~~A~~-----~~p~ILfIDEiD~l~~~~~~~~~~~~~~~~i~~~Ll~~ldg 340 (380)
..|.....+..+....+. ..+.|.++||+|.+.+.. +++ -+++.+|-
T Consensus 97 ~~I~rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~----------rQt--llYnlfDi 164 (408)
T KOG2228|consen 97 KGITRQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHS----------RQT--LLYNLFDI 164 (408)
T ss_pred HHHHHHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccch----------hhH--HHHHHHHH
Confidence 112233333333333221 123456678999886532 111 24555554
Q ss_pred CccCCCcEEEEEEeCCCCC---chHHHHhcccceeEecCCC
Q 016911 341 LTQSDELVFVLAATNLPWE---LDAAMLRRLEKRVSFSLIA 378 (380)
Q Consensus 341 l~~~~~~VlVIatTN~~~~---Ld~aLlrRF~~~I~~plPd 378 (380)
......+++||+.|.+.+- |...+.+||.+..-+=+|.
T Consensus 165 sqs~r~Piciig~Ttrld~lE~LEKRVKSRFshr~I~m~~~ 205 (408)
T KOG2228|consen 165 SQSARAPICIIGVTTRLDILELLEKRVKSRFSHRVIFMLPS 205 (408)
T ss_pred HhhcCCCeEEEEeeccccHHHHHHHHHHhhcccceeeccCC
Confidence 4556677999998877754 6678888998885444443
No 261
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=97.84 E-value=0.0001 Score=78.57 Aligned_cols=105 Identities=22% Similarity=0.314 Sum_probs=68.8
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhc----------CCeEEEEecchhhhh----------hccch------HHHHHHHHH
Q 016911 242 WKGILLFGPPGTGKTMLAKAVATEC----------KTTFFNISASSVVSK----------WRGDS------EKLIKVLFE 295 (380)
Q Consensus 242 ~~~vLL~GppGtGKT~la~ala~~l----------~~~~v~v~~s~l~~~----------~~ge~------e~~l~~lf~ 295 (380)
+..+++.|-||||||.+++.+-..+ ...|+.+|+..+.+. +.|+. -..+..-|.
T Consensus 422 g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l~~~~~~Y~~I~~~lsg~~~~~~~al~~L~~~f~ 501 (767)
T KOG1514|consen 422 GSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRLASPREIYEKIWEALSGERVTWDAALEALNFRFT 501 (767)
T ss_pred ceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceeecCHHHHHHHHHHhcccCcccHHHHHHHHHHhhc
Confidence 3478999999999999999987755 457888888665432 11221 111122222
Q ss_pred HH-HhcCCeEEEEcCcchhhhhccccchhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCCCCC
Q 016911 296 LA-RHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWE 359 (380)
Q Consensus 296 ~A-~~~~p~ILfIDEiD~l~~~~~~~~~~~~~~~~i~~~Ll~~ldgl~~~~~~VlVIatTN~~~~ 359 (380)
.. ....++||+|||+|.|....+. -|++.+|.......+++||+.+|..+.
T Consensus 502 ~~k~~~~~~VvLiDElD~Lvtr~Qd-------------VlYn~fdWpt~~~sKLvvi~IaNTmdl 553 (767)
T KOG1514|consen 502 VPKPKRSTTVVLIDELDILVTRSQD-------------VLYNIFDWPTLKNSKLVVIAIANTMDL 553 (767)
T ss_pred cCCCCCCCEEEEeccHHHHhcccHH-------------HHHHHhcCCcCCCCceEEEEecccccC
Confidence 11 2334789999999999765432 255555655666777889999988665
No 262
>COG3284 AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription]
Probab=97.84 E-value=5e-06 Score=87.46 Aligned_cols=126 Identities=25% Similarity=0.330 Sum_probs=76.2
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHhc--CCeEEEEecchhhhhhc---------cchH----HHHHHHHHHHHhcCCeE
Q 016911 240 SPWKGILLFGPPGTGKTMLAKAVATEC--KTTFFNISASSVVSKWR---------GDSE----KLIKVLFELARHHAPST 304 (380)
Q Consensus 240 ~~~~~vLL~GppGtGKT~la~ala~~l--~~~~v~v~~s~l~~~~~---------ge~e----~~l~~lf~~A~~~~p~I 304 (380)
.....+++.|.|||||-.+++++.... ..||+.++|..+....+ |... +-.+..++.|. .+.
T Consensus 334 ~~~~pvll~GEtGtGKe~laraiH~~s~~~gpfvAvNCaAip~~liesELFGy~~GafTga~~kG~~g~~~~A~---gGt 410 (606)
T COG3284 334 ATDLPVLLQGETGTGKEVLARAIHQNSEAAGPFVAVNCAAIPEALIESELFGYVAGAFTGARRKGYKGKLEQAD---GGT 410 (606)
T ss_pred hcCCCeEecCCcchhHHHHHHHHHhcccccCCeEEEEeccchHHhhhHHHhccCccccccchhccccccceecC---CCc
Confidence 344689999999999999999998877 56999999976543322 2211 22222333333 579
Q ss_pred EEEcCcchhhhhccccchhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCCCCCchHHHHh-cccceeEecC
Q 016911 305 IFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLR-RLEKRVSFSL 376 (380)
Q Consensus 305 LfIDEiD~l~~~~~~~~~~~~~~~~i~~~Ll~~ldgl~~~~~~VlVIatTN~~~~Ld~aLlr-RF~~~I~~pl 376 (380)
+|+|||..+.-.- +....+.+.+.-+.-+++-. .+-.|.||+||++ +|..-+.. ||.+.++|.+
T Consensus 411 lFldeIgd~p~~~-----Qs~LLrVl~e~~v~p~g~~~-~~vdirvi~ath~--dl~~lv~~g~fredLyyrL 475 (606)
T COG3284 411 LFLDEIGDMPLAL-----QSRLLRVLQEGVVTPLGGTR-IKVDIRVIAATHR--DLAQLVEQGRFREDLYYRL 475 (606)
T ss_pred cHHHHhhhchHHH-----HHHHHHHHhhCceeccCCcc-eeEEEEEEeccCc--CHHHHHHcCCchHHHHHHh
Confidence 9999999885421 12222222222222233433 4456889999998 44333333 6666555543
No 263
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.83 E-value=1.8e-05 Score=66.12 Aligned_cols=31 Identities=35% Similarity=0.662 Sum_probs=27.9
Q ss_pred EEEEcCCCCcHHHHHHHHHHhcCCeEEEEec
Q 016911 245 ILLFGPPGTGKTMLAKAVATECKTTFFNISA 275 (380)
Q Consensus 245 vLL~GppGtGKT~la~ala~~l~~~~v~v~~ 275 (380)
++|.|+||+||||+|+.+|+.++.+++.++.
T Consensus 2 I~I~G~~gsGKST~a~~La~~~~~~~i~~d~ 32 (121)
T PF13207_consen 2 IIISGPPGSGKSTLAKELAERLGFPVISMDD 32 (121)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHTCEEEEEHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCeEEEecc
Confidence 7899999999999999999999988876664
No 264
>PRK11823 DNA repair protein RadA; Provisional
Probab=97.80 E-value=0.00014 Score=75.30 Aligned_cols=80 Identities=25% Similarity=0.392 Sum_probs=55.2
Q ss_pred ccCCCCceEEEEcCCCCcHHHHHHHHHHhc---CCeEEEEecchhhhhhc------cc--------hHHHHHHHHHHHHh
Q 016911 237 GLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKWR------GD--------SEKLIKVLFELARH 299 (380)
Q Consensus 237 ~~~~~~~~vLL~GppGtGKT~la~ala~~l---~~~~v~v~~s~l~~~~~------ge--------~e~~l~~lf~~A~~ 299 (380)
+.+.++..++++|+||+|||+++..++... +.++++++..+...... +. .+..+..+......
T Consensus 75 GGi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ees~~qi~~ra~rlg~~~~~l~~~~e~~l~~i~~~i~~ 154 (446)
T PRK11823 75 GGLVPGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEESASQIKLRAERLGLPSDNLYLLAETNLEAILATIEE 154 (446)
T ss_pred CCccCCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccccHHHHHHHHHHcCCChhcEEEeCCCCHHHHHHHHHh
Confidence 456777889999999999999999998765 56777777654332211 10 11223445556666
Q ss_pred cCCeEEEEcCcchhhhh
Q 016911 300 HAPSTIFLDEIDAIISQ 316 (380)
Q Consensus 300 ~~p~ILfIDEiD~l~~~ 316 (380)
..|.+|+||++..+...
T Consensus 155 ~~~~lVVIDSIq~l~~~ 171 (446)
T PRK11823 155 EKPDLVVIDSIQTMYSP 171 (446)
T ss_pred hCCCEEEEechhhhccc
Confidence 67899999999988653
No 265
>KOG2383 consensus Predicted ATPase [General function prediction only]
Probab=97.80 E-value=0.00025 Score=71.41 Aligned_cols=28 Identities=39% Similarity=0.587 Sum_probs=24.7
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHhc
Q 016911 239 LSPWKGILLFGPPGTGKTMLAKAVATEC 266 (380)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~la~ala~~l 266 (380)
-.+++|++|||..|||||+|...+-..+
T Consensus 111 ~~~PkGlYlYG~VGcGKTmLMDlFy~~~ 138 (467)
T KOG2383|consen 111 PGPPKGLYLYGSVGCGKTMLMDLFYDAL 138 (467)
T ss_pred CCCCceEEEecccCcchhHHHHHHhhcC
Confidence 3568999999999999999999988666
No 266
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=97.79 E-value=0.00015 Score=73.29 Aligned_cols=79 Identities=25% Similarity=0.346 Sum_probs=53.9
Q ss_pred ccCCCCceEEEEcCCCCcHHHHHHHHHHhc---CCeEEEEecchhhhhh------ccc--------hHHHHHHHHHHHHh
Q 016911 237 GLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKW------RGD--------SEKLIKVLFELARH 299 (380)
Q Consensus 237 ~~~~~~~~vLL~GppGtGKT~la~ala~~l---~~~~v~v~~s~l~~~~------~ge--------~e~~l~~lf~~A~~ 299 (380)
+.+.++..++++|+||+|||+++..+|... +.++++++..+-.... .+. .+..+..+......
T Consensus 77 GGi~~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EEs~~qi~~Ra~rlg~~~~~l~l~~e~~le~I~~~i~~ 156 (372)
T cd01121 77 GGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEESPEQIKLRADRLGISTENLYLLAETNLEDILASIEE 156 (372)
T ss_pred CCccCCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCcCHHHHHHHHHHcCCCcccEEEEccCcHHHHHHHHHh
Confidence 346777889999999999999999998765 3467677654322111 010 12223455566666
Q ss_pred cCCeEEEEcCcchhhh
Q 016911 300 HAPSTIFLDEIDAIIS 315 (380)
Q Consensus 300 ~~p~ILfIDEiD~l~~ 315 (380)
..|.+|+||++..+..
T Consensus 157 ~~~~lVVIDSIq~l~~ 172 (372)
T cd01121 157 LKPDLVIIDSIQTVYS 172 (372)
T ss_pred cCCcEEEEcchHHhhc
Confidence 7899999999998854
No 267
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=97.79 E-value=0.00023 Score=69.98 Aligned_cols=115 Identities=10% Similarity=0.017 Sum_probs=73.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhcCC-------------eEEEEecchhhhhhccchHHHHHHHHHHHH-----hcCCe
Q 016911 242 WKGILLFGPPGTGKTMLAKAVATECKT-------------TFFNISASSVVSKWRGDSEKLIKVLFELAR-----HHAPS 303 (380)
Q Consensus 242 ~~~vLL~GppGtGKT~la~ala~~l~~-------------~~v~v~~s~l~~~~~ge~e~~l~~lf~~A~-----~~~p~ 303 (380)
...+||+|+.|.||+++++.+++.+.. .+..++.. +... .-..++.+.+... .....
T Consensus 18 ~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~---g~~i--~vd~Ir~l~~~~~~~~~~~~~~K 92 (299)
T PRK07132 18 SHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIF---DKDL--SKSEFLSAINKLYFSSFVQSQKK 92 (299)
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccC---CCcC--CHHHHHHHHHHhccCCcccCCce
Confidence 357889999999999999999988721 12222210 0101 1123333333222 12457
Q ss_pred EEEEcCcchhhhhccccchhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCCCCCchHHHHhcccceeEecCCC
Q 016911 304 TIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRVSFSLIA 378 (380)
Q Consensus 304 ILfIDEiD~l~~~~~~~~~~~~~~~~i~~~Ll~~ldgl~~~~~~VlVIatTN~~~~Ld~aLlrRF~~~I~~plPd 378 (380)
|++||++|.+.. ...+.|+..++. .+..+++|.+|+.++.+-+++++|+. .++|..|+
T Consensus 93 vvII~~~e~m~~-------------~a~NaLLK~LEE---Pp~~t~~il~~~~~~kll~TI~SRc~-~~~f~~l~ 150 (299)
T PRK07132 93 ILIIKNIEKTSN-------------SLLNALLKTIEE---PPKDTYFLLTTKNINKVLPTIVSRCQ-VFNVKEPD 150 (299)
T ss_pred EEEEecccccCH-------------HHHHHHHHHhhC---CCCCeEEEEEeCChHhChHHHHhCeE-EEECCCCC
Confidence 999999988732 244568887753 45567777788788889999999985 46776654
No 268
>PRK08118 topology modulation protein; Reviewed
Probab=97.77 E-value=6.2e-05 Score=67.60 Aligned_cols=34 Identities=29% Similarity=0.530 Sum_probs=30.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhcCCeEEEEecc
Q 016911 243 KGILLFGPPGTGKTMLAKAVATECKTTFFNISAS 276 (380)
Q Consensus 243 ~~vLL~GppGtGKT~la~ala~~l~~~~v~v~~s 276 (380)
..+++.||||+||||+|+.|++.++.+++.++.-
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l 35 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLNIPVHHLDAL 35 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCceecchh
Confidence 3689999999999999999999999998877753
No 269
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.76 E-value=1.2e-05 Score=90.56 Aligned_cols=122 Identities=25% Similarity=0.350 Sum_probs=82.6
Q ss_pred ccccccchhhHHHHHhhhhccchhhh---hHHHHHHHHHhcCCCCCCCCcHHHHHHhhhccchhhccCCCCccccccchH
Q 016911 139 VQNTSDMAVYEQYRTQFQGSGSTCLN---GVLANVINERLQKPLLPNFDSAETRALAESLCRDIIRGSPDVKWESIKGLE 215 (380)
Q Consensus 139 ~~~~~~L~~~~~~~~~~~~~~~~~~~---~~~~~~l~er~~~~v~~~l~~~e~r~~~~~~~~~~~~~~p~~~~~~l~Gl~ 215 (380)
.+|+.+++ ..+++...+......+ +.++..++++++ ++ ++|.+++++..+.+.+++..+ ++...-...-.+
T Consensus 41 ~~d~~~~~--~~~~~~~~~~~~~~~~~d~~~~l~~~r~~~~-~~--~~p~~~~~~~~~gv~a~~~~~-~t~~n~~~~~~~ 114 (1391)
T KOG0065|consen 41 EVDVTKLD--PDDDPKFIEKSSKHWEQDNEKLLEKLRERID-RV--ELPTIEVRFSALGVEADVTYG-PTLVNILSNPLE 114 (1391)
T ss_pred cccccCCC--cccchhHHHHhHHHHhhhHHHHHHHHHhhcC-cc--cCCceEEEeeecccccccccc-hhhhhhhhhHHH
Confidence 47777777 5556666666666555 677888999998 65 889999999999999988876 222211111111
Q ss_pred HHHHHHHHHHhccccCcccccccCCCCceEEEEcCCCCcHHHHHHHHHHhc
Q 016911 216 NAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC 266 (380)
Q Consensus 216 ~~k~~L~~~l~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~l 266 (380)
.........-...+...+..++.++|++.+|+.||||+||||+.+++++.+
T Consensus 115 ~~~~~~~~~~~~~~~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~ 165 (1391)
T KOG0065|consen 115 SILRMLGKRKKKKIQILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKL 165 (1391)
T ss_pred HHhhhccccccccceeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCC
Confidence 111111111011123445667779999999999999999999999999877
No 270
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=97.73 E-value=0.00022 Score=66.09 Aligned_cols=39 Identities=33% Similarity=0.451 Sum_probs=31.4
Q ss_pred ccCCCCceEEEEcCCCCcHHHHHHHHHHhc---CCeEEEEec
Q 016911 237 GLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISA 275 (380)
Q Consensus 237 ~~~~~~~~vLL~GppGtGKT~la~ala~~l---~~~~v~v~~ 275 (380)
+.+.++..++++|+||+|||+++..+|... +.+.++++.
T Consensus 14 GGi~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~~ 55 (218)
T cd01394 14 GGVERGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDT 55 (218)
T ss_pred CCccCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEC
Confidence 456777889999999999999999998765 556666655
No 271
>PHA02624 large T antigen; Provisional
Probab=97.73 E-value=0.0001 Score=78.13 Aligned_cols=123 Identities=18% Similarity=0.201 Sum_probs=72.5
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHhcCCeEEEEecchhhhhhccchHHHHHHHHHHHHhcCCeEEEEcCcchhhhhcc
Q 016911 239 LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRG 318 (380)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~la~ala~~l~~~~v~v~~s~l~~~~~ge~e~~l~~lf~~A~~~~p~ILfIDEiD~l~~~~~ 318 (380)
++..+.++|+||||||||+++.+|++.++...+.++++.-.. + |...-..+..+.+||++-.-.....
T Consensus 428 iPKk~~il~~GPpnTGKTtf~~sLl~~L~G~vlsVNsPt~ks----------~--FwL~pl~D~~~~l~dD~t~~~~~~~ 495 (647)
T PHA02624 428 VPKRRYWLFKGPVNSGKTTLAAALLDLCGGKSLNVNCPPDKL----------N--FELGCAIDQFMVVFEDVKGQPADNK 495 (647)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHcCCeEEEeeCCcchh----------H--HHhhhhhhceEEEeeeccccccccc
Confidence 455578999999999999999999999977777777544211 1 2222222235899999854332111
Q ss_pred ccchhhHHHHHHHHHHHHHhcCC-cc-----CCCc-----EEEEEEeCCCCCchHHHHhcccceeEecC
Q 016911 319 EARSEHEASRRLKTELLIQMDGL-TQ-----SDEL-----VFVLAATNLPWELDAAMLRRLEKRVSFSL 376 (380)
Q Consensus 319 ~~~~~~~~~~~i~~~Ll~~ldgl-~~-----~~~~-----VlVIatTN~~~~Ld~aLlrRF~~~I~~pl 376 (380)
.-+...... -...|.+.+||- .- .... -..|.|||. ..++..+.-||..++.|..
T Consensus 496 ~Lp~G~~~d--Nl~~lRn~LDG~V~v~ld~KH~n~~q~~~PPlliT~Ne-y~iP~T~~~Rf~~~~~F~~ 561 (647)
T PHA02624 496 DLPSGQGMN--NLDNLRDYLDGSVPVNLEKKHLNKRSQIFPPGIVTMNE-YLIPQTVKARFAKVLDFKP 561 (647)
T ss_pred cCCcccccc--hhhHHHhhcCCCCccccchhccCchhccCCCeEEeecC-cccchhHHHHHHHhccccc
Confidence 000000000 013455666664 11 0000 124668886 3578899999998888753
No 272
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=97.72 E-value=0.00012 Score=65.01 Aligned_cols=59 Identities=22% Similarity=0.326 Sum_probs=37.5
Q ss_pred ccchHHHHHHHHHHHhccccCcccccccCCCCceEEEEcCCCCcHHHHHHHHHHhcCCe---EEEEecchh
Q 016911 211 IKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT---FFNISASSV 278 (380)
Q Consensus 211 l~Gl~~~k~~L~~~l~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~l~~~---~v~v~~s~l 278 (380)
++|.++..+.+...+. ... ...++.++++|++|+|||++++.+...+..+ ++.+++...
T Consensus 2 fvgR~~e~~~l~~~l~-~~~--------~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~~~~~~~~~~~~~ 63 (185)
T PF13191_consen 2 FVGREEEIERLRDLLD-AAQ--------SGSPRNLLLTGESGSGKTSLLRALLDRLAERGGYVISINCDDS 63 (185)
T ss_dssp -TT-HHHHHHHHHTTG-GTS--------S-----EEE-B-TTSSHHHHHHHHHHHHHHHT--EEEEEEETT
T ss_pred CCCHHHHHHHHHHHHH-HHH--------cCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEEEecc
Confidence 5788888888887763 111 2445889999999999999999998877433 666666655
No 273
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=97.71 E-value=0.00029 Score=69.82 Aligned_cols=80 Identities=26% Similarity=0.332 Sum_probs=53.5
Q ss_pred ccCCCCceEEEEcCCCCcHHHHHHHHHHhc---CCeEEEEecchhhhh----------------hccchHHHHHHHHHHH
Q 016911 237 GLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSK----------------WRGDSEKLIKVLFELA 297 (380)
Q Consensus 237 ~~~~~~~~vLL~GppGtGKT~la~ala~~l---~~~~v~v~~s~l~~~----------------~~ge~e~~l~~lf~~A 297 (380)
+.+.+++.++++||||||||+|+..++... +.+.+.+++...... .....+..+..+....
T Consensus 50 GGlp~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~~~~~li 129 (321)
T TIGR02012 50 GGLPRGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYARKLGVDIDNLLVSQPDTGEQALEIAETLV 129 (321)
T ss_pred CCCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEcccchhHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHh
Confidence 456777889999999999999988765544 556666665332111 1122334444444455
Q ss_pred HhcCCeEEEEcCcchhhhh
Q 016911 298 RHHAPSTIFLDEIDAIISQ 316 (380)
Q Consensus 298 ~~~~p~ILfIDEiD~l~~~ 316 (380)
+...+++|+||-+..+.+.
T Consensus 130 ~~~~~~lIVIDSv~al~~~ 148 (321)
T TIGR02012 130 RSGAVDIIVVDSVAALVPK 148 (321)
T ss_pred hccCCcEEEEcchhhhccc
Confidence 5667899999999988764
No 274
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.71 E-value=0.00037 Score=62.40 Aligned_cols=25 Identities=36% Similarity=0.518 Sum_probs=22.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhc
Q 016911 242 WKGILLFGPPGTGKTMLAKAVATEC 266 (380)
Q Consensus 242 ~~~vLL~GppGtGKT~la~ala~~l 266 (380)
...+.++|+||+||||++..++..+
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~L 29 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEKL 29 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHHH
Confidence 4679999999999999999999887
No 275
>PRK04296 thymidine kinase; Provisional
Probab=97.70 E-value=0.00041 Score=63.46 Aligned_cols=32 Identities=16% Similarity=0.159 Sum_probs=25.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhc---CCeEEEEe
Q 016911 243 KGILLFGPPGTGKTMLAKAVATEC---KTTFFNIS 274 (380)
Q Consensus 243 ~~vLL~GppGtGKT~la~ala~~l---~~~~v~v~ 274 (380)
.-++++||||+||||++..++..+ +..++.++
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k 37 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFK 37 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEe
Confidence 457899999999999998888766 55555554
No 276
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=97.70 E-value=0.00031 Score=64.92 Aligned_cols=27 Identities=22% Similarity=0.439 Sum_probs=22.7
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHhc
Q 016911 240 SPWKGILLFGPPGTGKTMLAKAVATEC 266 (380)
Q Consensus 240 ~~~~~vLL~GppGtGKT~la~ala~~l 266 (380)
..+..++|+||+|+||||+++.++...
T Consensus 23 ~~g~~~~ltGpNg~GKSTllr~i~~~~ 49 (199)
T cd03283 23 EKKNGILITGSNMSGKSTFLRTIGVNV 49 (199)
T ss_pred cCCcEEEEECCCCCChHHHHHHHHHHH
Confidence 345788999999999999999998533
No 277
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=97.69 E-value=0.00039 Score=69.07 Aligned_cols=80 Identities=25% Similarity=0.322 Sum_probs=53.8
Q ss_pred ccCCCCceEEEEcCCCCcHHHHHHHHHHhc---CCeEEEEecchhhhh----------------hccchHHHHHHHHHHH
Q 016911 237 GLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSK----------------WRGDSEKLIKVLFELA 297 (380)
Q Consensus 237 ~~~~~~~~vLL~GppGtGKT~la~ala~~l---~~~~v~v~~s~l~~~----------------~~ge~e~~l~~lf~~A 297 (380)
+.+.+++.+.++||||+|||+|+..++... +...+.++...-... .....+..+..+...+
T Consensus 50 GGlp~G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~i~~~li 129 (325)
T cd00983 50 GGYPKGRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDAEHALDPVYAKKLGVDLDNLLISQPDTGEQALEIADSLV 129 (325)
T ss_pred CCccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEECccccHHHHHHHHcCCCHHHheecCCCCHHHHHHHHHHHH
Confidence 356777889999999999999998877543 666777766321110 1112333444444445
Q ss_pred HhcCCeEEEEcCcchhhhh
Q 016911 298 RHHAPSTIFLDEIDAIISQ 316 (380)
Q Consensus 298 ~~~~p~ILfIDEiD~l~~~ 316 (380)
+...+++|+||-+..+.+.
T Consensus 130 ~s~~~~lIVIDSvaal~~~ 148 (325)
T cd00983 130 RSGAVDLIVVDSVAALVPK 148 (325)
T ss_pred hccCCCEEEEcchHhhccc
Confidence 5667899999999988763
No 278
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=97.69 E-value=8.6e-05 Score=68.04 Aligned_cols=122 Identities=13% Similarity=0.091 Sum_probs=56.8
Q ss_pred EEEEcCCCCcHHHHHHHH-HHh-c--CCeEEEEecchhhhhhccc-----hHH------------HHHHHHHHHHhcCCe
Q 016911 245 ILLFGPPGTGKTMLAKAV-ATE-C--KTTFFNISASSVVSKWRGD-----SEK------------LIKVLFELARHHAPS 303 (380)
Q Consensus 245 vLL~GppGtGKT~la~al-a~~-l--~~~~v~v~~s~l~~~~~ge-----~e~------------~l~~lf~~A~~~~p~ 303 (380)
.+++|.||+|||+.|-.. ... + +.+++. +...+.-..... ... .............++
T Consensus 3 ~~~~G~pGsGKS~~av~~~i~~~l~~gr~V~t-ni~gL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (193)
T PF05707_consen 3 YLITGKPGSGKSYYAVSYVIIPALKKGRPVYT-NIPGLNIEKIQPVLGYDIPTRLIDLSDPDFEEDWDDPDDWRKLPKGS 81 (193)
T ss_dssp EEEE--TTSSHHHHHHHHHHH-GGGS---EEE---TTB-S--EEEE--TTT-S-----S--SSSEEGGGHHHHTTSGTT-
T ss_pred EEEEcCCCCcHhHHHHHHHHHHHHhCCCEEEE-ccCCcchhhhhhhccccccccccccccccchhhhhhhhhhcccCCCc
Confidence 578999999999987555 322 2 555544 443222111111 000 001112222222578
Q ss_pred EEEEcCcchhhhhccccchhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCCCCCchHHHHhcccceeEecC
Q 016911 304 TIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRVSFSL 376 (380)
Q Consensus 304 ILfIDEiD~l~~~~~~~~~~~~~~~~i~~~Ll~~ldgl~~~~~~VlVIatTN~~~~Ld~aLlrRF~~~I~~pl 376 (380)
+|+|||+..+.+.+...... .... +..+.. -+...+-||.+|..+..+|+.+++..+..+.+.-
T Consensus 82 liviDEa~~~~~~r~~~~~~---~~~~----~~~l~~--hRh~g~diiliTQ~~~~id~~ir~lve~~~~~~k 145 (193)
T PF05707_consen 82 LIVIDEAQNFFPSRSWKGKK---VPEI----IEFLAQ--HRHYGWDIILITQSPSQIDKFIRDLVEYHYHCRK 145 (193)
T ss_dssp EEEETTGGGTSB---T-T-------HH----HHGGGG--CCCTT-EEEEEES-GGGB-HHHHCCEEEEEEEEE
T ss_pred EEEEECChhhcCCCcccccc---chHH----HHHHHH--hCcCCcEEEEEeCCHHHHhHHHHHHHheEEEEEe
Confidence 99999999998876542110 1112 233321 1333466888999999999999987766665543
No 279
>PRK07261 topology modulation protein; Provisional
Probab=97.68 E-value=0.00011 Score=66.24 Aligned_cols=34 Identities=21% Similarity=0.442 Sum_probs=29.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcCCeEEEEecch
Q 016911 244 GILLFGPPGTGKTMLAKAVATECKTTFFNISASS 277 (380)
Q Consensus 244 ~vLL~GppGtGKT~la~ala~~l~~~~v~v~~s~ 277 (380)
.+++.|+||+||||+|+.++..++.+++.++.-.
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~ 35 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLH 35 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEE
Confidence 4899999999999999999999998887766443
No 280
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=97.68 E-value=0.00029 Score=62.73 Aligned_cols=74 Identities=20% Similarity=0.140 Sum_probs=46.9
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHhcC--CeEEEEecchhh--------hhhcc-----chHHHHHHHHHHHHhcCCe
Q 016911 239 LSPWKGILLFGPPGTGKTMLAKAVATECK--TTFFNISASSVV--------SKWRG-----DSEKLIKVLFELARHHAPS 303 (380)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~la~ala~~l~--~~~v~v~~s~l~--------~~~~g-----e~e~~l~~lf~~A~~~~p~ 303 (380)
+.++..+.|.||+|+|||||++.++.... .--+.++...+. ...++ ......+-.+..+....|.
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~qLS~G~~qrl~laral~~~p~ 102 (163)
T cd03216 23 VRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGIAMVYQLSVGERQMVEIARALARNAR 102 (163)
T ss_pred EeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHhcCeEEEEecCHHHHHHHHHHHHHhcCCC
Confidence 67888999999999999999999998762 111222221111 00011 1122334455666677899
Q ss_pred EEEEcCcch
Q 016911 304 TIFLDEIDA 312 (380)
Q Consensus 304 ILfIDEiD~ 312 (380)
++++||-..
T Consensus 103 illlDEP~~ 111 (163)
T cd03216 103 LLILDEPTA 111 (163)
T ss_pred EEEEECCCc
Confidence 999999753
No 281
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=97.65 E-value=0.00075 Score=63.37 Aligned_cols=78 Identities=19% Similarity=0.329 Sum_probs=51.4
Q ss_pred ccCCCCceEEEEcCCCCcHHHHHHHHHHhc---CCeEEEEecchhhhhhc------------------------------
Q 016911 237 GLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKWR------------------------------ 283 (380)
Q Consensus 237 ~~~~~~~~vLL~GppGtGKT~la~ala~~l---~~~~v~v~~s~l~~~~~------------------------------ 283 (380)
+.+.++..++++|+||+|||+++..++... +.+.++++..+-...+.
T Consensus 20 gG~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e~~~~~~~~~~~~~g~~~~~~~~~g~l~i~~~~~~~~~ 99 (234)
T PRK06067 20 GGIPFPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTENTSKSYLKQMESVKIDISDFFLWGYLRIFPLNTEGFE 99 (234)
T ss_pred CCCcCCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcCCCHHHHHHHHHHCCCChhHHHhCCCceEEeccccccc
Confidence 456778889999999999999999996543 55666666532211100
Q ss_pred ---cchHHHHHHHHHHHHhcCCeEEEEcCcchhh
Q 016911 284 ---GDSEKLIKVLFELARHHAPSTIFLDEIDAII 314 (380)
Q Consensus 284 ---ge~e~~l~~lf~~A~~~~p~ILfIDEiD~l~ 314 (380)
...+..+..+........+.+++||++..+.
T Consensus 100 ~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~ 133 (234)
T PRK06067 100 WNSTLANKLLELIIEFIKSKREDVIIIDSLTIFA 133 (234)
T ss_pred cCcchHHHHHHHHHHHHHhcCCCEEEEecHHHHH
Confidence 0113344444455555578899999998764
No 282
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=97.65 E-value=0.0006 Score=64.40 Aligned_cols=40 Identities=23% Similarity=0.338 Sum_probs=29.9
Q ss_pred cccCCCCceEEEEcCCCCcHHHHHHHHHHh---cCCeEEEEec
Q 016911 236 TGLLSPWKGILLFGPPGTGKTMLAKAVATE---CKTTFFNISA 275 (380)
Q Consensus 236 ~~~~~~~~~vLL~GppGtGKT~la~ala~~---l~~~~v~v~~ 275 (380)
.+++.++..+|+.||||+|||+++..++.. -+.+.++++.
T Consensus 15 ~GG~~~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~ 57 (237)
T TIGR03877 15 HGGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVAL 57 (237)
T ss_pred cCCCcCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEe
Confidence 456778899999999999999999766543 2555555544
No 283
>PRK00131 aroK shikimate kinase; Reviewed
Probab=97.65 E-value=5.3e-05 Score=66.83 Aligned_cols=35 Identities=23% Similarity=0.356 Sum_probs=30.6
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHhcCCeEEEEe
Q 016911 240 SPWKGILLFGPPGTGKTMLAKAVATECKTTFFNIS 274 (380)
Q Consensus 240 ~~~~~vLL~GppGtGKT~la~ala~~l~~~~v~v~ 274 (380)
.++..++|+|+|||||||+|+.+|+.++.+++..+
T Consensus 2 ~~~~~i~l~G~~GsGKstla~~La~~l~~~~~d~d 36 (175)
T PRK00131 2 LKGPNIVLIGFMGAGKSTIGRLLAKRLGYDFIDTD 36 (175)
T ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHhCCCEEECh
Confidence 35678999999999999999999999998887544
No 284
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=97.63 E-value=0.00039 Score=64.50 Aligned_cols=41 Identities=27% Similarity=0.320 Sum_probs=31.9
Q ss_pred cccCCCCceEEEEcCCCCcHHHHHHHHHHhc---C------CeEEEEecc
Q 016911 236 TGLLSPWKGILLFGPPGTGKTMLAKAVATEC---K------TTFFNISAS 276 (380)
Q Consensus 236 ~~~~~~~~~vLL~GppGtGKT~la~ala~~l---~------~~~v~v~~s 276 (380)
.+++.++.-+.|+||||+|||+++..+|... + ...++++..
T Consensus 13 ~GG~~~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e 62 (226)
T cd01393 13 GGGIPTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTE 62 (226)
T ss_pred CCCCcCCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecC
Confidence 3557778889999999999999999987653 2 556666654
No 285
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=97.62 E-value=0.00035 Score=65.19 Aligned_cols=42 Identities=24% Similarity=0.281 Sum_probs=32.0
Q ss_pred cccCCCCceEEEEcCCCCcHHHHHHHHHHhc---------CCeEEEEecch
Q 016911 236 TGLLSPWKGILLFGPPGTGKTMLAKAVATEC---------KTTFFNISASS 277 (380)
Q Consensus 236 ~~~~~~~~~vLL~GppGtGKT~la~ala~~l---------~~~~v~v~~s~ 277 (380)
.+++.++.-+.|+||||+|||+++..++... +...++++..+
T Consensus 13 ~GGi~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~ 63 (235)
T cd01123 13 GGGIETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEG 63 (235)
T ss_pred cCCCCCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCC
Confidence 3457788889999999999999999997543 24666666543
No 286
>KOG0481 consensus DNA replication licensing factor, MCM5 component [Replication, recombination and repair]
Probab=97.59 E-value=0.00016 Score=74.64 Aligned_cols=181 Identities=20% Similarity=0.214 Sum_probs=96.3
Q ss_pred HHHHHHhhhccchhhccCCCCccccccchHHHHHHHHHHHhccccCccccccc-CCCCceEEEEcCCCCcHHHHHHHHHH
Q 016911 186 AETRALAESLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVAT 264 (380)
Q Consensus 186 ~e~r~~~~~~~~~~~~~~p~~~~~~l~Gl~~~k~~L~~~l~~~l~~~~~~~~~-~~~~~~vLL~GppGtGKT~la~ala~ 264 (380)
-|..|..++-..+++....+.---.|.|.+++|+.+.-.+-- -....+-.+. ....-+|||.|.|||.||-|++-+-.
T Consensus 308 EEEeFk~la~~~d~Ye~is~sIAPSIfG~~DiKkAiaClLFg-GsrK~LpDg~~lRGDINVLLLGDPgtAKSQlLKFvEk 386 (729)
T KOG0481|consen 308 EEEEFKKLAASPDVYERISKSIAPSIFGHEDIKKAIACLLFG-GSRKRLPDGVTLRGDINVLLLGDPGTAKSQLLKFVEK 386 (729)
T ss_pred HHHHHHHHhcCccHHHHHhhccCchhcCchhHHHHHHHHhhc-CccccCCCcceeccceeEEEecCCchhHHHHHHHHHh
Confidence 344566666566666554444445788999999888765422 1111111122 34457899999999999999999987
Q ss_pred hcCCeEEEEecc----hhhhhhccchHHHHHHHHH----HHHhcCCeEEEEcCcchhhhhccccchhhHHHHHHHHHHHH
Q 016911 265 ECKTTFFNISAS----SVVSKWRGDSEKLIKVLFE----LARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLI 336 (380)
Q Consensus 265 ~l~~~~v~v~~s----~l~~~~~ge~e~~l~~lf~----~A~~~~p~ILfIDEiD~l~~~~~~~~~~~~~~~~i~~~Ll~ 336 (380)
-....++.-... .+......++.. +. |. .....+++|++|||+|++-.+.. -.-|+..++-.-.+
T Consensus 387 vsPIaVYTSGKGSSAAGLTASV~RD~~t--Re-FylEGGAMVLADgGVvCIDEFDKMre~DR--VAIHEAMEQQTISI-- 459 (729)
T KOG0481|consen 387 VSPIAVYTSGKGSSAAGLTASVIRDPST--RE-FYLEGGAMVLADGGVVCIDEFDKMREDDR--VAIHEAMEQQTISI-- 459 (729)
T ss_pred cCceEEEecCCCcccccceeeEEecCCc--ce-EEEecceEEEecCCEEEeehhhccCchhh--hHHHHHHHhhhHHH--
Confidence 766555432211 111111100000 00 00 00012367999999999844311 11122221111111
Q ss_pred HhcCCc-cCCCcEEEEEEeCCCC-------------CchHHHHhcccceeEe
Q 016911 337 QMDGLT-QSDELVFVLAATNLPW-------------ELDAAMLRRLEKRVSF 374 (380)
Q Consensus 337 ~ldgl~-~~~~~VlVIatTN~~~-------------~Ld~aLlrRF~~~I~~ 374 (380)
.--|+. .-+....|+|++|.+. ++.+.+++|||.++-+
T Consensus 460 AKAGITT~LNSRtSVLAAANpvfGRyDd~Kt~~dNIDf~~TILSRFDmIFIV 511 (729)
T KOG0481|consen 460 AKAGITTTLNSRTSVLAAANPVFGRYDDTKTGEDNIDFMPTILSRFDMIFIV 511 (729)
T ss_pred hhhcceeeecchhhhhhhcCCccccccccCCcccccchhhhHhhhccEEEEE
Confidence 111221 1223455888998764 1568999999986544
No 287
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=97.58 E-value=0.00021 Score=67.48 Aligned_cols=74 Identities=24% Similarity=0.359 Sum_probs=50.6
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHhc--------CCeEEEEecc-hhhhhhccc-------------hHHHHHHHHHHH
Q 016911 240 SPWKGILLFGPPGTGKTMLAKAVATEC--------KTTFFNISAS-SVVSKWRGD-------------SEKLIKVLFELA 297 (380)
Q Consensus 240 ~~~~~vLL~GppGtGKT~la~ala~~l--------~~~~v~v~~s-~l~~~~~ge-------------~e~~l~~lf~~A 297 (380)
..+.++|+.|||||||||+++-+|..+ ...+..++-+ ++.+...|. .......+....
T Consensus 135 ~g~lntLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDersEIag~~~gvpq~~~g~R~dVld~cpk~~gmmmaI 214 (308)
T COG3854 135 NGWLNTLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDERSEIAGCLNGVPQHGRGRRMDVLDPCPKAEGMMMAI 214 (308)
T ss_pred cCceeeEEecCCCCChHHHHHHHHHHhhccccccCCceEEEEeccchhhccccCCchhhhhhhhhhcccchHHHHHHHHH
Confidence 455789999999999999999998866 2344455543 333322221 222334456677
Q ss_pred HhcCCeEEEEcCcchh
Q 016911 298 RHHAPSTIFLDEIDAI 313 (380)
Q Consensus 298 ~~~~p~ILfIDEiD~l 313 (380)
+...|.|+++|||...
T Consensus 215 rsm~PEViIvDEIGt~ 230 (308)
T COG3854 215 RSMSPEVIIVDEIGTE 230 (308)
T ss_pred HhcCCcEEEEeccccH
Confidence 8889999999999754
No 288
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=97.55 E-value=0.00083 Score=61.71 Aligned_cols=25 Identities=28% Similarity=0.469 Sum_probs=21.5
Q ss_pred CCCC-ceEEEEcCCCCcHHHHHHHHH
Q 016911 239 LSPW-KGILLFGPPGTGKTMLAKAVA 263 (380)
Q Consensus 239 ~~~~-~~vLL~GppGtGKT~la~ala 263 (380)
+.++ +.++|+||.|+||||+++.++
T Consensus 24 i~~~~~~~~ltG~Ng~GKStll~~i~ 49 (200)
T cd03280 24 LGENKRVLVITGPNAGGKTVTLKTLG 49 (200)
T ss_pred ECCCceEEEEECCCCCChHHHHHHHH
Confidence 3444 569999999999999999998
No 289
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=97.55 E-value=0.00058 Score=62.77 Aligned_cols=25 Identities=20% Similarity=0.359 Sum_probs=22.0
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHH
Q 016911 240 SPWKGILLFGPPGTGKTMLAKAVAT 264 (380)
Q Consensus 240 ~~~~~vLL~GppGtGKT~la~ala~ 264 (380)
.++..++|+||.|+||||+++.++.
T Consensus 27 ~~~~~~~l~G~Ng~GKStll~~i~~ 51 (202)
T cd03243 27 GSGRLLLITGPNMGGKSTYLRSIGL 51 (202)
T ss_pred cCCeEEEEECCCCCccHHHHHHHHH
Confidence 4456899999999999999999983
No 290
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.54 E-value=0.0003 Score=60.21 Aligned_cols=34 Identities=41% Similarity=0.637 Sum_probs=27.5
Q ss_pred EEEEcCCCCcHHHHHHHHHHhcCCeEEEEecchhhh
Q 016911 245 ILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVS 280 (380)
Q Consensus 245 vLL~GppGtGKT~la~ala~~l~~~~v~v~~s~l~~ 280 (380)
+++.||||+||||+++.++..++ ...++...+..
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~~--~~~i~~D~~~~ 35 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRLG--AVVISQDEIRR 35 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHST--EEEEEHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHCC--CEEEeHHHHHH
Confidence 68999999999999999999998 44455555543
No 291
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.54 E-value=0.0012 Score=67.18 Aligned_cols=108 Identities=16% Similarity=0.155 Sum_probs=59.7
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhc-------CCeE--EEEecchhhh--------h------hccchHHHHHHHHHHHH
Q 016911 242 WKGILLFGPPGTGKTMLAKAVATEC-------KTTF--FNISASSVVS--------K------WRGDSEKLIKVLFELAR 298 (380)
Q Consensus 242 ~~~vLL~GppGtGKT~la~ala~~l-------~~~~--v~v~~s~l~~--------~------~~ge~e~~l~~lf~~A~ 298 (380)
+..++|+||+|+||||++..+|..+ +..+ +.+++-.... . ........+...+...
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~- 252 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQS- 252 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHh-
Confidence 4689999999999999999998765 2333 3444311110 0 1111222233333332
Q ss_pred hcCCeEEEEcCcchhhhhccccchhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCCCCCchH
Q 016911 299 HHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDA 362 (380)
Q Consensus 299 ~~~p~ILfIDEiD~l~~~~~~~~~~~~~~~~i~~~Ll~~ldgl~~~~~~VlVIatTN~~~~Ld~ 362 (380)
...++|+||+++....+ ...+..+...++........++|+.+|.....+..
T Consensus 253 -~~~DlVLIDTaGr~~~~-----------~~~l~el~~~l~~~~~~~e~~LVlsat~~~~~~~~ 304 (388)
T PRK12723 253 -KDFDLVLVDTIGKSPKD-----------FMKLAEMKELLNACGRDAEFHLAVSSTTKTSDVKE 304 (388)
T ss_pred -CCCCEEEEcCCCCCccC-----------HHHHHHHHHHHHhcCCCCeEEEEEcCCCCHHHHHH
Confidence 34579999999876321 01123344444333333355778877777666653
No 292
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=97.53 E-value=0.00062 Score=63.42 Aligned_cols=77 Identities=25% Similarity=0.392 Sum_probs=51.1
Q ss_pred ccCCCCceEEEEcCCCCcHHHHHHHHHHhc----CCeEEEEecchhhhh--------------h----------------
Q 016911 237 GLLSPWKGILLFGPPGTGKTMLAKAVATEC----KTTFFNISASSVVSK--------------W---------------- 282 (380)
Q Consensus 237 ~~~~~~~~vLL~GppGtGKT~la~ala~~l----~~~~v~v~~s~l~~~--------------~---------------- 282 (380)
+++.++..+|+.||||+|||+++..++... +.+.+.++..+-... +
T Consensus 14 GGip~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ee~~~~l~~~~~s~g~d~~~~~~~g~l~~~d~~~~~~ 93 (226)
T PF06745_consen 14 GGIPKGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSFEEPPEELIENMKSFGWDLEEYEDSGKLKIIDAFPERI 93 (226)
T ss_dssp TSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEESSS-HHHHHHHHHTTTS-HHHHHHTTSEEEEESSGGGS
T ss_pred CCCCCCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEecCCHHHHHHHHHHcCCcHHHHhhcCCEEEEecccccc
Confidence 556778899999999999999998765433 566666665322110 0
Q ss_pred ---ccchHHHHHHHHHHHHhcCCeEEEEcCcchh
Q 016911 283 ---RGDSEKLIKVLFELARHHAPSTIFLDEIDAI 313 (380)
Q Consensus 283 ---~ge~e~~l~~lf~~A~~~~p~ILfIDEiD~l 313 (380)
....+.....+........+.+++||-+..+
T Consensus 94 ~~~~~~~~~l~~~i~~~i~~~~~~~vVIDsls~l 127 (226)
T PF06745_consen 94 GWSPNDLEELLSKIREAIEELKPDRVVIDSLSAL 127 (226)
T ss_dssp T-TSCCHHHHHHHHHHHHHHHTSSEEEEETHHHH
T ss_pred cccccCHHHHHHHHHHHHHhcCCCEEEEECHHHH
Confidence 1123445555666666667899999999988
No 293
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=97.52 E-value=0.00044 Score=67.47 Aligned_cols=98 Identities=21% Similarity=0.292 Sum_probs=60.2
Q ss_pred cccchHHHHHHHHHHHhccccCcccccccCCCCceEEEEcCCCCcHHHHHHHHHHhc-----CCeEEE-----Eecc--h
Q 016911 210 SIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC-----KTTFFN-----ISAS--S 277 (380)
Q Consensus 210 ~l~Gl~~~k~~L~~~l~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~l-----~~~~v~-----v~~s--~ 277 (380)
.+.|+--+++.+-..+......+. -+.+..+-|+|++||||+.+++.+|+.+ ..+++. .++. .
T Consensus 83 ~lfGQHla~~~Vv~alk~~~~n~~-----p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~Gl~S~~V~~fvat~hFP~~~ 157 (344)
T KOG2170|consen 83 ALFGQHLAKQLVVNALKSHWANPN-----PRKPLVLSFHGWTGTGKNYVAEIIAENLYRGGLRSPFVHHFVATLHFPHAS 157 (344)
T ss_pred HhhchHHHHHHHHHHHHHHhcCCC-----CCCCeEEEecCCCCCchhHHHHHHHHHHHhccccchhHHHhhhhccCCChH
Confidence 556777666666666555444332 1334556689999999999999999877 222221 1111 1
Q ss_pred hhhhhccchHHHHHHHHHHHHhcCCeEEEEcCcchhhh
Q 016911 278 VVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIIS 315 (380)
Q Consensus 278 l~~~~~ge~e~~l~~lf~~A~~~~p~ILfIDEiD~l~~ 315 (380)
-...|. ++..+.+...+..+..+++++||+|++.+
T Consensus 158 ~ie~Yk---~eL~~~v~~~v~~C~rslFIFDE~DKmp~ 192 (344)
T KOG2170|consen 158 KIEDYK---EELKNRVRGTVQACQRSLFIFDEVDKLPP 192 (344)
T ss_pred HHHHHH---HHHHHHHHHHHHhcCCceEEechhhhcCH
Confidence 112222 23334455556667778999999999954
No 294
>KOG0480 consensus DNA replication licensing factor, MCM6 component [Replication, recombination and repair]
Probab=97.51 E-value=0.0001 Score=77.69 Aligned_cols=155 Identities=19% Similarity=0.175 Sum_probs=83.4
Q ss_pred CccccccchHHHHHHHHHHHhccccCccccccc-CCCCceEEEEcCCCCcHHHHHHHHHHhcCCeEEEEecch----hhh
Q 016911 206 VKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASS----VVS 280 (380)
Q Consensus 206 ~~~~~l~Gl~~~k~~L~~~l~~~l~~~~~~~~~-~~~~~~vLL~GppGtGKT~la~ala~~l~~~~v~v~~s~----l~~ 280 (380)
.-+..|.|.+.+|..+.-.+.--.... .-.+. ++...++++.|.||+|||-++++.++.+...+|...-+. +..
T Consensus 342 Sl~PsIyGhe~VK~GilL~LfGGv~K~-a~eg~~lRGDinv~iVGDPgt~KSQfLk~v~~fsPR~vYtsGkaSSaAGLTa 420 (764)
T KOG0480|consen 342 SLFPSIYGHELVKAGILLSLFGGVHKS-AGEGTSLRGDINVCIVGDPGTGKSQFLKAVCAFSPRSVYTSGKASSAAGLTA 420 (764)
T ss_pred hhCccccchHHHHhhHHHHHhCCcccc-CCCCccccCCceEEEeCCCCccHHHHHHHHhccCCcceEecCcccccccceE
Confidence 346788899998887764332211111 11122 455679999999999999999999999976665432211 111
Q ss_pred hhccchHHHHHHHHH--HHHhcCCeEEEEcCcchhhhhccccchhhHHHHHHHHHHHHHhcCCc------cCCCcEEEEE
Q 016911 281 KWRGDSEKLIKVLFE--LARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT------QSDELVFVLA 352 (380)
Q Consensus 281 ~~~ge~e~~l~~lf~--~A~~~~p~ILfIDEiD~l~~~~~~~~~~~~~~~~i~~~Ll~~ldgl~------~~~~~VlVIa 352 (380)
..+.+.+.. .-.++ ...-.+.+|=+|||+|++-.+.+ ..+....-++--.+. .-+....|||
T Consensus 421 aVvkD~esg-df~iEAGALmLADnGICCIDEFDKMd~~dq---------vAihEAMEQQtISIaKAGv~aTLnARtSIlA 490 (764)
T KOG0480|consen 421 AVVKDEESG-DFTIEAGALMLADNGICCIDEFDKMDVKDQ---------VAIHEAMEQQTISIAKAGVVATLNARTSILA 490 (764)
T ss_pred EEEecCCCC-ceeeecCcEEEccCceEEechhcccChHhH---------HHHHHHHHhheehheecceEEeecchhhhhh
Confidence 111110000 00000 00112357999999999843111 111111111111111 1112244788
Q ss_pred EeCCCC-------------CchHHHHhcccce
Q 016911 353 ATNLPW-------------ELDAAMLRRLEKR 371 (380)
Q Consensus 353 tTN~~~-------------~Ld~aLlrRF~~~ 371 (380)
|+|... .+++++++|||-.
T Consensus 491 AANPv~GhYdR~ktl~eNi~msApimSRFDL~ 522 (764)
T KOG0480|consen 491 AANPVGGHYDRKKTLRENINMSAPIMSRFDLF 522 (764)
T ss_pred hcCCcCCccccccchhhhcCCCchhhhhhcEE
Confidence 998775 2889999999853
No 295
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=97.51 E-value=0.0012 Score=59.82 Aligned_cols=28 Identities=36% Similarity=0.445 Sum_probs=25.4
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHhc
Q 016911 239 LSPWKGILLFGPPGTGKTMLAKAVATEC 266 (380)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~la~ala~~l 266 (380)
..++-.++|+||+|||||++.+++|...
T Consensus 26 v~~Ge~iaitGPSG~GKStllk~va~Li 53 (223)
T COG4619 26 VRAGEFIAITGPSGCGKSTLLKIVASLI 53 (223)
T ss_pred ecCCceEEEeCCCCccHHHHHHHHHhcc
Confidence 5778889999999999999999999855
No 296
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=97.49 E-value=0.00078 Score=60.79 Aligned_cols=34 Identities=24% Similarity=0.349 Sum_probs=28.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcCCeEEEEecch
Q 016911 244 GILLFGPPGTGKTMLAKAVATECKTTFFNISASS 277 (380)
Q Consensus 244 ~vLL~GppGtGKT~la~ala~~l~~~~v~v~~s~ 277 (380)
.+++.|+||+|||++|..++..++.+++++....
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~~~~~~~iat~~ 36 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQSGLQVLYIATAQ 36 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHcCCCcEeCcCCC
Confidence 5899999999999999999999887776666543
No 297
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.48 E-value=0.0017 Score=67.93 Aligned_cols=34 Identities=29% Similarity=0.411 Sum_probs=29.9
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHhcCCeEEEEe
Q 016911 241 PWKGILLFGPPGTGKTMLAKAVATECKTTFFNIS 274 (380)
Q Consensus 241 ~~~~vLL~GppGtGKT~la~ala~~l~~~~v~v~ 274 (380)
+.+.+||+||+||||||.++.++.+++..+.+-.
T Consensus 109 ~~~iLLltGPsGcGKSTtvkvLskelg~~~~Ew~ 142 (634)
T KOG1970|consen 109 GSRILLLTGPSGCGKSTTVKVLSKELGYQLIEWS 142 (634)
T ss_pred CceEEEEeCCCCCCchhHHHHHHHhhCceeeeec
Confidence 3467899999999999999999999998887654
No 298
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=97.48 E-value=0.0013 Score=75.71 Aligned_cols=54 Identities=20% Similarity=0.382 Sum_probs=42.3
Q ss_pred CCCccccccchHHHHHHHHHHHhccccCcccccccCCCCceEEEEcCCCCcHHHHHHHHHHhcC
Q 016911 204 PDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECK 267 (380)
Q Consensus 204 p~~~~~~l~Gl~~~k~~L~~~l~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~l~ 267 (380)
+...+++++|++..++++...+... ....+.+-|+|++|+||||||+++++.+.
T Consensus 179 ~~~~~~~~vG~~~~l~~l~~lL~l~----------~~~~~vvgI~G~gGiGKTTLA~~l~~~l~ 232 (1153)
T PLN03210 179 PSNDFEDFVGIEDHIAKMSSLLHLE----------SEEVRMVGIWGSSGIGKTTIARALFSRLS 232 (1153)
T ss_pred cCcccccccchHHHHHHHHHHHccc----------cCceEEEEEEcCCCCchHHHHHHHHHHHh
Confidence 3445788999999998888765321 13457889999999999999999988763
No 299
>KOG0477 consensus DNA replication licensing factor, MCM2 component [Replication, recombination and repair]
Probab=97.48 E-value=0.00018 Score=75.67 Aligned_cols=151 Identities=25% Similarity=0.281 Sum_probs=81.5
Q ss_pred ccccchHHHHHHHHHHHhccccCccccc--ccCCCCceEEEEcCCCCcHHHHHHHHHHhcCCeEEEEecchhhhh----h
Q 016911 209 ESIKGLENAKRLLKEAVVMPIKYPKYFT--GLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSK----W 282 (380)
Q Consensus 209 ~~l~Gl~~~k~~L~~~l~~~l~~~~~~~--~~~~~~~~vLL~GppGtGKT~la~ala~~l~~~~v~v~~s~l~~~----~ 282 (380)
-.|.|...+|..+.-++.- ..++... ..+....++||+|.||||||-.+|.+++.....++......-.-. .
T Consensus 449 PsIyGh~~VK~AvAlaLfG--Gv~kn~~~khkvRGDinvLL~GDPGTaKSQFLKY~eK~s~RAV~tTGqGASavGLTa~v 526 (854)
T KOG0477|consen 449 PSIYGHEDVKRAVALALFG--GVPKNPGGKHKVRGDINVLLLGDPGTAKSQFLKYAEKTSPRAVFTTGQGASAVGLTAYV 526 (854)
T ss_pred chhhchHHHHHHHHHHHhc--CCccCCCCCceeccceeEEEecCCCccHHHHHHHHHhcCcceeEeccCCccccceeEEE
Confidence 3678899988887754422 1222111 124455789999999999999999999988776664332211000 0
Q ss_pred ccc---hHHHHH-HHHHHHHhcCCeEEEEcCcchhhhhccccchhhHHHHHH-----HHHHHHHhcCCccCCCcEEEEEE
Q 016911 283 RGD---SEKLIK-VLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRL-----KTELLIQMDGLTQSDELVFVLAA 353 (380)
Q Consensus 283 ~ge---~e~~l~-~lf~~A~~~~p~ILfIDEiD~l~~~~~~~~~~~~~~~~i-----~~~Ll~~ldgl~~~~~~VlVIat 353 (380)
... .+..+. ..+-. ...+|-+|||+|++-.... -+-|+...+- ...+...+ ...+.||||
T Consensus 527 ~KdPvtrEWTLEaGALVL---ADkGvClIDEFDKMndqDR--tSIHEAMEQQSISISKAGIVtsL------qArctvIAA 595 (854)
T KOG0477|consen 527 RKDPVTREWTLEAGALVL---ADKGVCLIDEFDKMNDQDR--TSIHEAMEQQSISISKAGIVTSL------QARCTVIAA 595 (854)
T ss_pred eeCCccceeeeccCeEEE---ccCceEEeehhhhhccccc--chHHHHHHhcchhhhhhhHHHHH------Hhhhhhhee
Confidence 000 000000 00111 1256889999999843211 1112111110 00112222 123568999
Q ss_pred eCCCC-------------CchHHHHhccccee
Q 016911 354 TNLPW-------------ELDAAMLRRLEKRV 372 (380)
Q Consensus 354 TN~~~-------------~Ld~aLlrRF~~~I 372 (380)
+|... +|...+++||+..-
T Consensus 596 anPigGRY~~s~tFaqNV~ltePIlSRFDiLc 627 (854)
T KOG0477|consen 596 ANPIGGRYNPSLTFAQNVDLTEPILSRFDILC 627 (854)
T ss_pred cCCCCCccCCccchhhccccccchhhhcceee
Confidence 98732 37788999998643
No 300
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.48 E-value=0.00065 Score=59.69 Aligned_cols=74 Identities=26% Similarity=0.337 Sum_probs=45.2
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHhcCC--eEEEEecchhhh-------hhcc-----chHHHHHHHHHHHHhcCCeE
Q 016911 239 LSPWKGILLFGPPGTGKTMLAKAVATECKT--TFFNISASSVVS-------KWRG-----DSEKLIKVLFELARHHAPST 304 (380)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~la~ala~~l~~--~~v~v~~s~l~~-------~~~g-----e~e~~l~~lf~~A~~~~p~I 304 (380)
+.++..+.|.|++|+||||++++++..+.. --+.++...+.. ...+ ......+..+..+-...|.+
T Consensus 22 i~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~qlS~G~~~r~~l~~~l~~~~~i 101 (157)
T cd00267 22 LKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRIGYVPQLSGGQRQRVALARALLLNPDL 101 (157)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCCHHHHHhceEEEeeCCHHHHHHHHHHHHHhcCCCE
Confidence 567789999999999999999999997732 112333221110 0000 01112223344555556889
Q ss_pred EEEcCcch
Q 016911 305 IFLDEIDA 312 (380)
Q Consensus 305 LfIDEiD~ 312 (380)
+++||...
T Consensus 102 ~ilDEp~~ 109 (157)
T cd00267 102 LLLDEPTS 109 (157)
T ss_pred EEEeCCCc
Confidence 99999864
No 301
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=97.47 E-value=0.0012 Score=67.82 Aligned_cols=134 Identities=19% Similarity=0.237 Sum_probs=81.7
Q ss_pred cccccchHHHHHHHHHHHhccccCcccccccCCCCceEEEEcCCCCcHHHHHHHHHHhc----CC-eEEEEecchhhh--
Q 016911 208 WESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC----KT-TFFNISASSVVS-- 280 (380)
Q Consensus 208 ~~~l~Gl~~~k~~L~~~l~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~l----~~-~~v~v~~s~l~~-- 280 (380)
-..+.|.+..+..+++++..++.. +.+..+++.|.||||||.+..-+-..+ .. ..++++|..+..
T Consensus 149 p~~l~gRe~e~~~v~~F~~~hle~--------~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~ 220 (529)
T KOG2227|consen 149 PGTLKGRELEMDIVREFFSLHLEL--------NTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEAS 220 (529)
T ss_pred CCCccchHHHHHHHHHHHHhhhhc--------ccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchH
Confidence 357889999888888887665442 455789999999999999988665544 22 447888875421
Q ss_pred --------hh----ccc-hHHHHHHHHHH-HHhc-CCeEEEEcCcchhhhhccccchhhHHHHHHHHHHHHHhcCCccCC
Q 016911 281 --------KW----RGD-SEKLIKVLFEL-ARHH-APSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSD 345 (380)
Q Consensus 281 --------~~----~ge-~e~~l~~lf~~-A~~~-~p~ILfIDEiD~l~~~~~~~~~~~~~~~~i~~~Ll~~ldgl~~~~ 345 (380)
.+ .+. ........|.. ..+. .+-|+++||+|.+....+. ++.++. +.. +...
T Consensus 221 aiF~kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~----------vLy~lF-ewp--~lp~ 287 (529)
T KOG2227|consen 221 AIFKKIFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQT----------VLYTLF-EWP--KLPN 287 (529)
T ss_pred HHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccc----------eeeeeh-hcc--cCCc
Confidence 11 111 11122222322 2222 2569999999999743322 111222 222 3345
Q ss_pred CcEEEEEEeCCCCCchH
Q 016911 346 ELVFVLAATNLPWELDA 362 (380)
Q Consensus 346 ~~VlVIatTN~~~~Ld~ 362 (380)
..+++|+.+|..+.-|.
T Consensus 288 sr~iLiGiANslDlTdR 304 (529)
T KOG2227|consen 288 SRIILIGIANSLDLTDR 304 (529)
T ss_pred ceeeeeeehhhhhHHHH
Confidence 66788899998765443
No 302
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.46 E-value=0.0016 Score=59.12 Aligned_cols=74 Identities=22% Similarity=0.185 Sum_probs=44.8
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHhcCC--eEEEEecchh--hhhhc-cchHHHHHHHHHHHHhcCCeEEEEcCcch
Q 016911 239 LSPWKGILLFGPPGTGKTMLAKAVATECKT--TFFNISASSV--VSKWR-GDSEKLIKVLFELARHHAPSTIFLDEIDA 312 (380)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~la~ala~~l~~--~~v~v~~s~l--~~~~~-ge~e~~l~~lf~~A~~~~p~ILfIDEiD~ 312 (380)
+.++..+.|.||+|+|||||++.++..... --+.++...+ ..... -....+.+..+..+-...|.++++||--.
T Consensus 22 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~q~~~LSgGq~qrv~laral~~~p~lllLDEPts 100 (177)
T cd03222 22 VKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGITPVYKPQYIDLSGGELQRVAIAAALLRNATFYLFDEPSA 100 (177)
T ss_pred ECCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEEEEEEcccCCCCHHHHHHHHHHHHHhcCCCEEEEECCcc
Confidence 467788999999999999999999987621 1122222111 00100 01112233345555666789999999753
No 303
>PHA02774 E1; Provisional
Probab=97.45 E-value=0.00054 Score=72.42 Aligned_cols=34 Identities=24% Similarity=0.540 Sum_probs=28.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhcCCeEEE-Eec
Q 016911 242 WKGILLFGPPGTGKTMLAKAVATECKTTFFN-ISA 275 (380)
Q Consensus 242 ~~~vLL~GppGtGKT~la~ala~~l~~~~v~-v~~ 275 (380)
...++|+||||||||++|.+|++.++...+. +|.
T Consensus 434 knciv~~GPP~TGKS~fa~sL~~~L~G~vi~fvN~ 468 (613)
T PHA02774 434 KNCLVIYGPPDTGKSMFCMSLIKFLKGKVISFVNS 468 (613)
T ss_pred ccEEEEECCCCCCHHHHHHHHHHHhCCCEEEEEEC
Confidence 4689999999999999999999999655543 553
No 304
>PRK13947 shikimate kinase; Provisional
Probab=97.45 E-value=0.00012 Score=64.93 Aligned_cols=31 Identities=42% Similarity=0.548 Sum_probs=28.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcCCeEEEEe
Q 016911 244 GILLFGPPGTGKTMLAKAVATECKTTFFNIS 274 (380)
Q Consensus 244 ~vLL~GppGtGKT~la~ala~~l~~~~v~v~ 274 (380)
+++|.|+||||||++++.+|+.++.+++..+
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~~~id~d 33 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSFGFIDTD 33 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCEEECc
Confidence 6899999999999999999999999987655
No 305
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=97.45 E-value=0.0011 Score=57.97 Aligned_cols=72 Identities=22% Similarity=0.346 Sum_probs=44.5
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHhcCC--eEEEEecc---hhhhhhccchHHHHHHHHHHHHhcCCeEEEEcCcch
Q 016911 239 LSPWKGILLFGPPGTGKTMLAKAVATECKT--TFFNISAS---SVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDA 312 (380)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~la~ala~~l~~--~~v~v~~s---~l~~~~~ge~e~~l~~lf~~A~~~~p~ILfIDEiD~ 312 (380)
+.++..+.+.||+|+||||+++++++.... --+.++.. .+...+.+ ....+-.+..+-...|.++++||-..
T Consensus 23 ~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~~~i~~~~~lS~--G~~~rv~laral~~~p~illlDEP~~ 99 (144)
T cd03221 23 INPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGSTVKIGYFEQLSG--GEKMRLALAKLLLENPNLLLLDEPTN 99 (144)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCeEEEEEEccCCH--HHHHHHHHHHHHhcCCCEEEEeCCcc
Confidence 577889999999999999999999987621 11111111 00000111 12223334555566789999999753
No 306
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.43 E-value=0.00029 Score=64.86 Aligned_cols=68 Identities=21% Similarity=0.304 Sum_probs=41.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcCC----eEEEEecc-hhhhh---------hccchHHHHHHHHHHHHhcCCeEEEEcC
Q 016911 244 GILLFGPPGTGKTMLAKAVATECKT----TFFNISAS-SVVSK---------WRGDSEKLIKVLFELARHHAPSTIFLDE 309 (380)
Q Consensus 244 ~vLL~GppGtGKT~la~ala~~l~~----~~v~v~~s-~l~~~---------~~ge~e~~l~~lf~~A~~~~p~ILfIDE 309 (380)
.+++.||+|+||||++++++..+.. .++.+... ++... .++.........+..+....|++|++||
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~E~~~~~~~~~i~q~~vg~~~~~~~~~i~~aLr~~pd~ii~gE 82 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPIEFVHESKRSLINQREVGLDTLSFENALKAALRQDPDVILVGE 82 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCccccccCccceeeecccCCCccCHHHHHHHHhcCCcCEEEEcC
Confidence 4789999999999999999887742 22322211 11100 0121122334455566667799999999
Q ss_pred cc
Q 016911 310 ID 311 (380)
Q Consensus 310 iD 311 (380)
+.
T Consensus 83 ir 84 (198)
T cd01131 83 MR 84 (198)
T ss_pred CC
Confidence 83
No 307
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=97.42 E-value=0.00029 Score=68.61 Aligned_cols=80 Identities=36% Similarity=0.400 Sum_probs=56.2
Q ss_pred CCCccccccchHHHHHHHHHHHhccccCcccccccCCCCceEEEEcCCCCcHHHHHHHHHHhc--CCeEEEEecchhhhh
Q 016911 204 PDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC--KTTFFNISASSVVSK 281 (380)
Q Consensus 204 p~~~~~~l~Gl~~~k~~L~~~l~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~l--~~~~v~v~~s~l~~~ 281 (380)
+...-..++|+.++.+..--.+.+ ++..+ -.++.+||.||||||||.||-++++++ +.||..+..++.++.
T Consensus 33 ~~~~~~g~vGQ~~AReAagiivdl-ik~Kk------maGravLlaGppgtGKTAlAlaisqELG~kvPFcpmvgSEvyS~ 105 (456)
T KOG1942|consen 33 AVEVAAGFVGQENAREAAGIIVDL-IKSKK------MAGRAVLLAGPPGTGKTALALAISQELGPKVPFCPMVGSEVYSN 105 (456)
T ss_pred eeecccccccchhhhhhhhHHHHH-HHhhh------ccCcEEEEecCCCCchhHHHHHHHHHhCCCCCcccccchhhhhh
Confidence 334456788998887765432222 11111 346899999999999999999999999 568888888888776
Q ss_pred hccchHHHH
Q 016911 282 WRGDSEKLI 290 (380)
Q Consensus 282 ~~ge~e~~l 290 (380)
-+..++-..
T Consensus 106 EvKKTEvLm 114 (456)
T KOG1942|consen 106 EVKKTEVLM 114 (456)
T ss_pred hhhHHHHHH
Confidence 555444433
No 308
>PRK09354 recA recombinase A; Provisional
Probab=97.42 E-value=0.0012 Score=66.07 Aligned_cols=79 Identities=25% Similarity=0.320 Sum_probs=52.4
Q ss_pred ccCCCCceEEEEcCCCCcHHHHHHHHHHhc---CCeEEEEecchhhhh----------------hccchHHHHHHHHHHH
Q 016911 237 GLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSK----------------WRGDSEKLIKVLFELA 297 (380)
Q Consensus 237 ~~~~~~~~vLL~GppGtGKT~la~ala~~l---~~~~v~v~~s~l~~~----------------~~ge~e~~l~~lf~~A 297 (380)
+.+..++-+.++||||||||+|+..++... +...++++...-... .....+..+..+-...
T Consensus 55 GGip~G~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId~E~s~~~~~a~~lGvdld~lli~qp~~~Eq~l~i~~~li 134 (349)
T PRK09354 55 GGLPRGRIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYAKKLGVDIDNLLVSQPDTGEQALEIADTLV 134 (349)
T ss_pred CCCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHh
Confidence 456777889999999999999998776433 666666665431111 0112333344444445
Q ss_pred HhcCCeEEEEcCcchhhh
Q 016911 298 RHHAPSTIFLDEIDAIIS 315 (380)
Q Consensus 298 ~~~~p~ILfIDEiD~l~~ 315 (380)
+...+++|+||-+-.+.+
T Consensus 135 ~s~~~~lIVIDSvaaL~~ 152 (349)
T PRK09354 135 RSGAVDLIVVDSVAALVP 152 (349)
T ss_pred hcCCCCEEEEeChhhhcc
Confidence 566788999999998875
No 309
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=97.41 E-value=0.00019 Score=75.86 Aligned_cols=63 Identities=24% Similarity=0.380 Sum_probs=47.1
Q ss_pred ccccccchHHHHHHHHHHHhccccCcccccccCCCCceEEEEcCCCCcHHHHHHHHHHhc-CCeEEEEec
Q 016911 207 KWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC-KTTFFNISA 275 (380)
Q Consensus 207 ~~~~l~Gl~~~k~~L~~~l~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~l-~~~~v~v~~ 275 (380)
-|+++.|++++++.+.+.+..... ++....+-++|.||||+|||+|+++|+..+ ..+++.+..
T Consensus 74 fF~d~yGlee~ieriv~~l~~Aa~------gl~~~~~IL~LvGPpG~GKSsLa~~la~~le~~~~Y~~kg 137 (644)
T PRK15455 74 AFEEFYGMEEAIEQIVSYFRHAAQ------GLEEKKQILYLLGPVGGGKSSLAERLKSLMERVPIYVLKA 137 (644)
T ss_pred chhcccCcHHHHHHHHHHHHHHHH------hcCCCCceEEEecCCCCCchHHHHHHHHHHHhCcceeecC
Confidence 378999999999998877633222 122345678999999999999999999987 346665544
No 310
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=97.41 E-value=0.00031 Score=71.81 Aligned_cols=64 Identities=17% Similarity=0.238 Sum_probs=41.8
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHh--c--CCeEEEEecchhhhhhccchHHHHHHHHHHHHhcCCeEEEEcCcchhhh
Q 016911 240 SPWKGILLFGPPGTGKTMLAKAVATE--C--KTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIIS 315 (380)
Q Consensus 240 ~~~~~vLL~GppGtGKT~la~ala~~--l--~~~~v~v~~s~l~~~~~ge~e~~l~~lf~~A~~~~p~ILfIDEiD~l~~ 315 (380)
....++++.||+|||||+++.+++.. + | -.++.+.++.... . ..... -...++|+|||+..+.-
T Consensus 207 e~~~Nli~lGp~GTGKThla~~l~~~~a~~sG---~f~T~a~Lf~~L~----~---~~lg~--v~~~DlLI~DEvgylp~ 274 (449)
T TIGR02688 207 EPNYNLIELGPKGTGKSYIYNNLSPYVILISG---GTITVAKLFYNIS----T---RQIGL--VGRWDVVAFDEVATLKF 274 (449)
T ss_pred hcCCcEEEECCCCCCHHHHHHHHhHHHHHHcC---CcCcHHHHHHHHH----H---HHHhh--hccCCEEEEEcCCCCcC
Confidence 45689999999999999999998766 2 3 2334444433221 1 11111 12357999999998654
No 311
>PRK03839 putative kinase; Provisional
Probab=97.41 E-value=0.00013 Score=65.51 Aligned_cols=31 Identities=29% Similarity=0.525 Sum_probs=28.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcCCeEEEEe
Q 016911 244 GILLFGPPGTGKTMLAKAVATECKTTFFNIS 274 (380)
Q Consensus 244 ~vLL~GppGtGKT~la~ala~~l~~~~v~v~ 274 (380)
.++|.|+||+||||+++.+|+.++.+++.++
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~~~~id~d 32 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLGYEYVDLT 32 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEehh
Confidence 4889999999999999999999999887655
No 312
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=97.41 E-value=0.00065 Score=58.44 Aligned_cols=53 Identities=19% Similarity=0.229 Sum_probs=40.0
Q ss_pred ccccchHHHHHHHHHHHhccccCcccccccCCCCceEEEEcCCCCcHHHHHHHHHHhc
Q 016911 209 ESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC 266 (380)
Q Consensus 209 ~~l~Gl~~~k~~L~~~l~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~l 266 (380)
..|.|+.-+.+.+..++...+..+. -..+..+.|+|+||||||.+++.||+.+
T Consensus 25 ~~l~GQhla~~~v~~ai~~~l~~~~-----p~KpLVlSfHG~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 25 RNLFGQHLAVEVVVNAIKGHLANPN-----PRKPLVLSFHGWTGTGKNFVSRLIAEHL 77 (127)
T ss_pred HHccCcHHHHHHHHHHHHHHHcCCC-----CCCCEEEEeecCCCCcHHHHHHHHHHHH
Confidence 4678888888888877766554431 1233456699999999999999999986
No 313
>PRK06762 hypothetical protein; Provisional
Probab=97.40 E-value=0.00065 Score=60.11 Aligned_cols=38 Identities=26% Similarity=0.324 Sum_probs=30.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhcCCeEEEEecchhhh
Q 016911 243 KGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVS 280 (380)
Q Consensus 243 ~~vLL~GppGtGKT~la~ala~~l~~~~v~v~~s~l~~ 280 (380)
.-++|.|+||+||||+|+.+++.++..++.++...+..
T Consensus 3 ~li~i~G~~GsGKST~A~~L~~~l~~~~~~i~~D~~r~ 40 (166)
T PRK06762 3 TLIIIRGNSGSGKTTIAKQLQERLGRGTLLVSQDVVRR 40 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCeEEecHHHHHH
Confidence 56889999999999999999999965666666655543
No 314
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=97.39 E-value=0.0014 Score=59.19 Aligned_cols=71 Identities=14% Similarity=0.207 Sum_probs=44.9
Q ss_pred EEEEcCCCCcHHHHHHHHHHhcCCeEEEEecchhhhh----h-------------ccchHHHHHHHHHHHHhcCCeEEEE
Q 016911 245 ILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSK----W-------------RGDSEKLIKVLFELARHHAPSTIFL 307 (380)
Q Consensus 245 vLL~GppGtGKT~la~ala~~l~~~~v~v~~s~l~~~----~-------------~ge~e~~l~~lf~~A~~~~p~ILfI 307 (380)
+|+.|++|+|||++|..++...+.+.+++....-.+. . ..+....+...+... ..+++|+|
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~~~~~~~y~at~~~~d~em~~rI~~H~~~R~~~w~t~E~~~~l~~~l~~~--~~~~~VLI 79 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAELGGPVTYIATAEAFDDEMAERIARHRKRRPAHWRTIETPRDLVSALKEL--DPGDVVLI 79 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCCeEEEEccCcCCHHHHHHHHHHHHhCCCCceEeecHHHHHHHHHhc--CCCCEEEE
Confidence 6899999999999999999887667766655432211 0 011222233332221 14679999
Q ss_pred cCcchhhhhc
Q 016911 308 DEIDAIISQR 317 (380)
Q Consensus 308 DEiD~l~~~~ 317 (380)
|-+..+..+.
T Consensus 80 Dclt~~~~n~ 89 (169)
T cd00544 80 DCLTLWVTNL 89 (169)
T ss_pred EcHhHHHHHh
Confidence 9998876654
No 315
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.38 E-value=0.0015 Score=61.02 Aligned_cols=22 Identities=32% Similarity=0.529 Sum_probs=20.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHH
Q 016911 243 KGILLFGPPGTGKTMLAKAVAT 264 (380)
Q Consensus 243 ~~vLL~GppGtGKT~la~ala~ 264 (380)
+.++|+||.|+|||++++.++.
T Consensus 30 ~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 30 SIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred eEEEEECCCCCChHHHHHHHHH
Confidence 7799999999999999999983
No 316
>PRK04328 hypothetical protein; Provisional
Probab=97.37 E-value=0.0024 Score=60.91 Aligned_cols=39 Identities=23% Similarity=0.336 Sum_probs=28.4
Q ss_pred ccCCCCceEEEEcCCCCcHHHHHHHHHHh-c--CCeEEEEec
Q 016911 237 GLLSPWKGILLFGPPGTGKTMLAKAVATE-C--KTTFFNISA 275 (380)
Q Consensus 237 ~~~~~~~~vLL~GppGtGKT~la~ala~~-l--~~~~v~v~~ 275 (380)
+.+.++..+|+.||||+|||+++..++.. + +.+.++++.
T Consensus 18 GGip~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis~ 59 (249)
T PRK04328 18 GGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVAL 59 (249)
T ss_pred CCCcCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEEe
Confidence 45677889999999999999998876543 2 445554444
No 317
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=97.35 E-value=0.0014 Score=67.99 Aligned_cols=79 Identities=25% Similarity=0.334 Sum_probs=53.1
Q ss_pred ccCCCCceEEEEcCCCCcHHHHHHHHHHhc---CCeEEEEecchhhhhh------ccc--------hHHHHHHHHHHHHh
Q 016911 237 GLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKW------RGD--------SEKLIKVLFELARH 299 (380)
Q Consensus 237 ~~~~~~~~vLL~GppGtGKT~la~ala~~l---~~~~v~v~~s~l~~~~------~ge--------~e~~l~~lf~~A~~ 299 (380)
+.+.++..+++.|+||+|||+++..++... +.++++++..+..... .+. .+..+..+...+..
T Consensus 89 GGi~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EEs~~qi~~ra~rlg~~~~~l~~~~e~~~~~I~~~i~~ 168 (454)
T TIGR00416 89 GGIVPGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEESLQQIKMRAIRLGLPEPNLYVLSETNWEQICANIEE 168 (454)
T ss_pred CCccCCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcCCHHHHHHHHHHcCCChHHeEEcCCCCHHHHHHHHHh
Confidence 456778899999999999999999987755 3466666654332211 011 01123445555566
Q ss_pred cCCeEEEEcCcchhhh
Q 016911 300 HAPSTIFLDEIDAIIS 315 (380)
Q Consensus 300 ~~p~ILfIDEiD~l~~ 315 (380)
..|.+|+||.+..+..
T Consensus 169 ~~~~~vVIDSIq~l~~ 184 (454)
T TIGR00416 169 ENPQACVIDSIQTLYS 184 (454)
T ss_pred cCCcEEEEecchhhcc
Confidence 6789999999988754
No 318
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=97.35 E-value=0.00029 Score=64.81 Aligned_cols=36 Identities=33% Similarity=0.453 Sum_probs=26.7
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhc---CCeEEEEecch
Q 016911 242 WKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASS 277 (380)
Q Consensus 242 ~~~vLL~GppGtGKT~la~ala~~l---~~~~v~v~~s~ 277 (380)
.+..++.||||||||++++.+...+ +..++.+.++.
T Consensus 18 ~~~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~apT~ 56 (196)
T PF13604_consen 18 DRVSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLAPTN 56 (196)
T ss_dssp CSEEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEESSH
T ss_pred CeEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEECCcH
Confidence 3568889999999999999987766 55666666543
No 319
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=97.35 E-value=0.003 Score=57.33 Aligned_cols=26 Identities=19% Similarity=0.235 Sum_probs=23.5
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHH
Q 016911 239 LSPWKGILLFGPPGTGKTMLAKAVAT 264 (380)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~la~ala~ 264 (380)
+.++..+.|.||+|+|||||.+++..
T Consensus 18 i~~G~~~~l~G~nG~GKSTLl~~il~ 43 (176)
T cd03238 18 IPLNVLVVVTGVSGSGKSTLVNEGLY 43 (176)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhh
Confidence 67788999999999999999999964
No 320
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=97.35 E-value=0.00018 Score=62.29 Aligned_cols=31 Identities=29% Similarity=0.525 Sum_probs=27.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcCCeEEEEe
Q 016911 244 GILLFGPPGTGKTMLAKAVATECKTTFFNIS 274 (380)
Q Consensus 244 ~vLL~GppGtGKT~la~ala~~l~~~~v~v~ 274 (380)
+++|+|+||+|||++++.+|..++.+++..+
T Consensus 1 ~i~l~G~~GsGKstla~~la~~l~~~~~~~d 31 (154)
T cd00464 1 NIVLIGMMGAGKTTVGRLLAKALGLPFVDLD 31 (154)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHhCCCEEEch
Confidence 4789999999999999999999998887555
No 321
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.35 E-value=0.0011 Score=59.24 Aligned_cols=28 Identities=29% Similarity=0.557 Sum_probs=25.9
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHhc
Q 016911 239 LSPWKGILLFGPPGTGKTMLAKAVATEC 266 (380)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~la~ala~~l 266 (380)
+.++..+.|.||+|+|||||++.+++.+
T Consensus 25 i~~G~~~~l~G~nGsGKstLl~~i~G~~ 52 (171)
T cd03228 25 IKPGEKVAIVGPSGSGKSTLLKLLLRLY 52 (171)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 5778899999999999999999999976
No 322
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=97.35 E-value=0.0022 Score=61.60 Aligned_cols=40 Identities=18% Similarity=0.301 Sum_probs=30.0
Q ss_pred cccCCCCceEEEEcCCCCcHHHHHHHHHHhc---CCeEEEEec
Q 016911 236 TGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISA 275 (380)
Q Consensus 236 ~~~~~~~~~vLL~GppGtGKT~la~ala~~l---~~~~v~v~~ 275 (380)
.+++.++..++++|+||||||+++..++... +.+.++++.
T Consensus 30 ~GGip~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~ 72 (259)
T TIGR03878 30 LGGIPAYSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVTV 72 (259)
T ss_pred CCCeECCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEe
Confidence 4457788899999999999999998876533 445555553
No 323
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=97.34 E-value=0.0049 Score=55.35 Aligned_cols=28 Identities=29% Similarity=0.469 Sum_probs=25.9
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHhc
Q 016911 239 LSPWKGILLFGPPGTGKTMLAKAVATEC 266 (380)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~la~ala~~l 266 (380)
+.++..+.+.||+|+|||||++.+++..
T Consensus 25 i~~Ge~~~i~G~nGsGKStLl~~l~G~~ 52 (178)
T cd03247 25 LKQGEKIALLGRSGSGKSTLLQLLTGDL 52 (178)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 6788899999999999999999999876
No 324
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=97.32 E-value=0.00038 Score=67.45 Aligned_cols=69 Identities=28% Similarity=0.361 Sum_probs=44.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhcCC----------eEEEEe-cchhhhhhc-------c------chHHHHHHHHHHHH
Q 016911 243 KGILLFGPPGTGKTMLAKAVATECKT----------TFFNIS-ASSVVSKWR-------G------DSEKLIKVLFELAR 298 (380)
Q Consensus 243 ~~vLL~GppGtGKT~la~ala~~l~~----------~~v~v~-~s~l~~~~~-------g------e~e~~l~~lf~~A~ 298 (380)
.++++.||+|+||||++++++..+.. .+..++ ..++...+. + +.......++..+.
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~~~~r~~v~~~~~k~~~~~~~i~ 191 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILSTGISQLGLRGKKVGIVDERSEIAGCVNGVPQHDVGIRTDVLDGCPKAEGMMMLIR 191 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCCCCceEEECCEEeecchhHHHHHHHhcccccccccccccccccchHHHHHHHHHH
Confidence 68999999999999999999998732 222222 122221111 0 11122344666777
Q ss_pred hcCCeEEEEcCcc
Q 016911 299 HHAPSTIFLDEID 311 (380)
Q Consensus 299 ~~~p~ILfIDEiD 311 (380)
...|.+|++||+.
T Consensus 192 ~~~P~villDE~~ 204 (270)
T TIGR02858 192 SMSPDVIVVDEIG 204 (270)
T ss_pred hCCCCEEEEeCCC
Confidence 7889999999963
No 325
>PRK00625 shikimate kinase; Provisional
Probab=97.32 E-value=0.00022 Score=64.61 Aligned_cols=31 Identities=39% Similarity=0.559 Sum_probs=28.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcCCeEEEEe
Q 016911 244 GILLFGPPGTGKTMLAKAVATECKTTFFNIS 274 (380)
Q Consensus 244 ~vLL~GppGtGKT~la~ala~~l~~~~v~v~ 274 (380)
+++|.|.||+||||+++.+|+.++.+++.++
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~~~~id~D 32 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLSLPFFDTD 32 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCEEEhh
Confidence 5899999999999999999999999987766
No 326
>PRK14974 cell division protein FtsY; Provisional
Probab=97.31 E-value=0.003 Score=63.15 Aligned_cols=73 Identities=16% Similarity=0.159 Sum_probs=44.8
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHhc---CCeEEEEecchhhh-------hhc-------------cchHHHHHHHHHHH
Q 016911 241 PWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVS-------KWR-------------GDSEKLIKVLFELA 297 (380)
Q Consensus 241 ~~~~vLL~GppGtGKT~la~ala~~l---~~~~v~v~~s~l~~-------~~~-------------ge~e~~l~~lf~~A 297 (380)
.+..++|.|+||+||||++..+|..+ +..+..+++..+.. .+. ......+......+
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai~~~ 218 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAIEHA 218 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHHHHH
Confidence 35789999999999999998888766 44555555432110 000 11112233334444
Q ss_pred HhcCCeEEEEcCcchh
Q 016911 298 RHHAPSTIFLDEIDAI 313 (380)
Q Consensus 298 ~~~~p~ILfIDEiD~l 313 (380)
.....++|+||....+
T Consensus 219 ~~~~~DvVLIDTaGr~ 234 (336)
T PRK14974 219 KARGIDVVLIDTAGRM 234 (336)
T ss_pred HhCCCCEEEEECCCcc
Confidence 4455679999999766
No 327
>COG4650 RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=97.30 E-value=0.00025 Score=69.08 Aligned_cols=77 Identities=25% Similarity=0.384 Sum_probs=50.8
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHH------hcCCeEEEEecchhhhh---------hccchHHHHHHHHHHHHhcCCeE
Q 016911 240 SPWKGILLFGPPGTGKTMLAKAVAT------ECKTTFFNISASSVVSK---------WRGDSEKLIKVLFELARHHAPST 304 (380)
Q Consensus 240 ~~~~~vLL~GppGtGKT~la~ala~------~l~~~~v~v~~s~l~~~---------~~ge~e~~l~~lf~~A~~~~p~I 304 (380)
.....+||.||.|.|||.||+.+.. ++..+|+++||..+.++ ..|.....-..--...+...++.
T Consensus 206 rsr~p~ll~gptgagksflarriyelk~arhq~sg~fvevncatlrgd~amsalfghvkgaftga~~~r~gllrsadggm 285 (531)
T COG4650 206 RSRAPILLNGPTGAGKSFLARRIYELKQARHQFSGAFVEVNCATLRGDTAMSALFGHVKGAFTGARESREGLLRSADGGM 285 (531)
T ss_pred hccCCeEeecCCCcchhHHHHHHHHHHHHHHhcCCceEEEeeeeecCchHHHHHHhhhccccccchhhhhhhhccCCCce
Confidence 3446799999999999999998854 45789999999876443 11211111111111223445789
Q ss_pred EEEcCcchhhhh
Q 016911 305 IFLDEIDAIISQ 316 (380)
Q Consensus 305 LfIDEiD~l~~~ 316 (380)
+|+|||..+..+
T Consensus 286 lfldeigelgad 297 (531)
T COG4650 286 LFLDEIGELGAD 297 (531)
T ss_pred EehHhhhhcCcc
Confidence 999999988543
No 328
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=97.30 E-value=0.00021 Score=64.11 Aligned_cols=35 Identities=20% Similarity=0.350 Sum_probs=29.5
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhcCCeEEEEecc
Q 016911 242 WKGILLFGPPGTGKTMLAKAVATECKTTFFNISAS 276 (380)
Q Consensus 242 ~~~vLL~GppGtGKT~la~ala~~l~~~~v~v~~s 276 (380)
++.++|.|+||+||||+|+.++..++.+++.++..
T Consensus 2 ~~~i~l~G~~gsGKst~a~~l~~~~~~~~~~~~~D 36 (175)
T cd00227 2 GRIIILNGGSSAGKSSIARALQSVLAEPWLHFGVD 36 (175)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhhCCCccccCcc
Confidence 46789999999999999999999988777655544
No 329
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.29 E-value=0.0019 Score=61.60 Aligned_cols=28 Identities=25% Similarity=0.411 Sum_probs=25.3
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHhc
Q 016911 239 LSPWKGILLFGPPGTGKTMLAKAVATEC 266 (380)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~la~ala~~l 266 (380)
+.++--+.|.||+|||||||.+.+|...
T Consensus 26 v~~GEfvsilGpSGcGKSTLLriiAGL~ 53 (248)
T COG1116 26 VEKGEFVAILGPSGCGKSTLLRLIAGLE 53 (248)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 5677889999999999999999999866
No 330
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=97.29 E-value=0.0032 Score=60.19 Aligned_cols=39 Identities=26% Similarity=0.175 Sum_probs=30.4
Q ss_pred ccCCCCceEEEEcCCCCcHHHHHHHHHHhc----CCeEEEEec
Q 016911 237 GLLSPWKGILLFGPPGTGKTMLAKAVATEC----KTTFFNISA 275 (380)
Q Consensus 237 ~~~~~~~~vLL~GppGtGKT~la~ala~~l----~~~~v~v~~ 275 (380)
+++.++..+++.|+||+|||+++..++... +.++..++.
T Consensus 25 gG~~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~ 67 (271)
T cd01122 25 KGLRKGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTISL 67 (271)
T ss_pred EEEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEc
Confidence 456777889999999999999998887654 556655554
No 331
>PRK14532 adenylate kinase; Provisional
Probab=97.29 E-value=0.00025 Score=64.08 Aligned_cols=30 Identities=33% Similarity=0.585 Sum_probs=26.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcCCeEEEE
Q 016911 244 GILLFGPPGTGKTMLAKAVATECKTTFFNI 273 (380)
Q Consensus 244 ~vLL~GppGtGKT~la~ala~~l~~~~v~v 273 (380)
++++.||||+||||+++.+|+.++..++.+
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~g~~~is~ 31 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEERGMVQLST 31 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCeEEeC
Confidence 589999999999999999999998766544
No 332
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.28 E-value=0.0058 Score=63.19 Aligned_cols=72 Identities=22% Similarity=0.224 Sum_probs=45.7
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHhc---CCeEEEEecchhhhh---------------hcc-----chHHHHHHHHHH
Q 016911 240 SPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSK---------------WRG-----DSEKLIKVLFEL 296 (380)
Q Consensus 240 ~~~~~vLL~GppGtGKT~la~ala~~l---~~~~v~v~~s~l~~~---------------~~g-----e~e~~l~~lf~~ 296 (380)
.++..++++|++|+||||++..+|..+ +..+..+++...... ..+ .....++.....
T Consensus 93 ~~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al~~ 172 (437)
T PRK00771 93 LKPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGLEK 172 (437)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHH
Confidence 356789999999999999999999877 455555555432110 011 112233444444
Q ss_pred HHhcCCeEEEEcCcchh
Q 016911 297 ARHHAPSTIFLDEIDAI 313 (380)
Q Consensus 297 A~~~~p~ILfIDEiD~l 313 (380)
+... ++|+||.....
T Consensus 173 ~~~~--DvVIIDTAGr~ 187 (437)
T PRK00771 173 FKKA--DVIIVDTAGRH 187 (437)
T ss_pred hhcC--CEEEEECCCcc
Confidence 4443 79999998665
No 333
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=97.28 E-value=0.0039 Score=55.79 Aligned_cols=28 Identities=29% Similarity=0.612 Sum_probs=25.5
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHhc
Q 016911 239 LSPWKGILLFGPPGTGKTMLAKAVATEC 266 (380)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~la~ala~~l 266 (380)
+.++..+.|.||+|+|||||++.++...
T Consensus 25 i~~Ge~~~i~G~nGsGKStLl~~l~G~~ 52 (173)
T cd03246 25 IEPGESLAIIGPSGSGKSTLARLILGLL 52 (173)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 5677889999999999999999999876
No 334
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=97.28 E-value=0.0034 Score=58.46 Aligned_cols=41 Identities=24% Similarity=0.231 Sum_probs=31.2
Q ss_pred cccCCCCceEEEEcCCCCcHHHHHHHHHHhc---CCeEEEEecc
Q 016911 236 TGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISAS 276 (380)
Q Consensus 236 ~~~~~~~~~vLL~GppGtGKT~la~ala~~l---~~~~v~v~~s 276 (380)
.+.+.++..+++.|+||+|||+++..++... +.+.++++..
T Consensus 10 ~gGi~~g~~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~e 53 (224)
T TIGR03880 10 GGGFPEGHVIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISLE 53 (224)
T ss_pred cCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECC
Confidence 3456778899999999999999998887543 5566666653
No 335
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=97.28 E-value=0.0031 Score=57.26 Aligned_cols=19 Identities=26% Similarity=0.546 Sum_probs=18.1
Q ss_pred EEEEcCCCCcHHHHHHHHH
Q 016911 245 ILLFGPPGTGKTMLAKAVA 263 (380)
Q Consensus 245 vLL~GppGtGKT~la~ala 263 (380)
++|+||.|+|||++++.++
T Consensus 2 ~~ltG~N~~GKst~l~~i~ 20 (185)
T smart00534 2 VIITGPNMGGKSTYLRQVG 20 (185)
T ss_pred EEEECCCCCcHHHHHHHHH
Confidence 6899999999999999998
No 336
>PRK06217 hypothetical protein; Validated
Probab=97.27 E-value=0.00028 Score=63.92 Aligned_cols=31 Identities=26% Similarity=0.423 Sum_probs=28.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcCCeEEEEe
Q 016911 244 GILLFGPPGTGKTMLAKAVATECKTTFFNIS 274 (380)
Q Consensus 244 ~vLL~GppGtGKT~la~ala~~l~~~~v~v~ 274 (380)
.|+|.|+||+||||++++++..++.+++..+
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~~~~~~~D 33 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLDIPHLDTD 33 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEEEcC
Confidence 5899999999999999999999998887655
No 337
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=97.26 E-value=0.00027 Score=63.45 Aligned_cols=33 Identities=24% Similarity=0.498 Sum_probs=26.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHhcCCeEEEEecchhh
Q 016911 245 ILLFGPPGTGKTMLAKAVATECKTTFFNISASSVV 279 (380)
Q Consensus 245 vLL~GppGtGKT~la~ala~~l~~~~v~v~~s~l~ 279 (380)
+++.||||+||||+++.+|..++...+ +.+++.
T Consensus 2 i~i~G~pGsGKst~a~~la~~~~~~~i--s~~d~l 34 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVENFGFTHL--SAGDLL 34 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeEE--ECChHH
Confidence 689999999999999999999986554 444443
No 338
>KOG0482 consensus DNA replication licensing factor, MCM7 component [Replication, recombination and repair]
Probab=97.26 E-value=0.00031 Score=72.54 Aligned_cols=155 Identities=22% Similarity=0.218 Sum_probs=85.9
Q ss_pred ccccchHHHHHHHHHHHhccccCccccccc--CCCCceEEEEcCCCCcHHHHHHHHHHhcCCeEEEEecchhhhhhccch
Q 016911 209 ESIKGLENAKRLLKEAVVMPIKYPKYFTGL--LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDS 286 (380)
Q Consensus 209 ~~l~Gl~~~k~~L~~~l~~~l~~~~~~~~~--~~~~~~vLL~GppGtGKT~la~ala~~l~~~~v~v~~s~l~~~~~ge~ 286 (380)
-+|.|.+++|+.|.-.+.--.. +....+ +....+++|.|.||+.||-|++.+.+......+...... .-+|-+
T Consensus 342 PEIyGheDVKKaLLLlLVGgvd--~~~~dGMKIRGdINicLmGDPGVAKSQLLkyi~rlapRgvYTTGrGS---SGVGLT 416 (721)
T KOG0482|consen 342 PEIYGHEDVKKALLLLLVGGVD--KSPGDGMKIRGDINICLMGDPGVAKSQLLKYISRLAPRGVYTTGRGS---SGVGLT 416 (721)
T ss_pred hhhccchHHHHHHHHHhhCCCC--CCCCCCceeecceeEEecCCCchhHHHHHHHHHhcCcccceecCCCC---Cccccc
Confidence 4788999999888755433111 111112 455578999999999999999999988765555433211 112222
Q ss_pred HHHHHHHHH--------HHHhcCCeEEEEcCcchhhhhccccchhhHHHHHHHHHHHHHhcCC-ccCCCcEEEEEEeCCC
Q 016911 287 EKLIKVLFE--------LARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGL-TQSDELVFVLAATNLP 357 (380)
Q Consensus 287 e~~l~~lf~--------~A~~~~p~ILfIDEiD~l~~~~~~~~~~~~~~~~i~~~Ll~~ldgl-~~~~~~VlVIatTN~~ 357 (380)
....++-.. ..-....+|-+|||+|++..... -.-|++..+-.-.+-+ -|+ ..-+..+.|+|++|..
T Consensus 417 AAVmkDpvTgEM~LEGGALVLAD~GICCIDEfDKM~e~DR--tAIHEVMEQQTISIaK--AGI~TtLNAR~sILaAANPa 492 (721)
T KOG0482|consen 417 AAVMKDPVTGEMVLEGGALVLADGGICCIDEFDKMDESDR--TAIHEVMEQQTISIAK--AGINTTLNARTSILAAANPA 492 (721)
T ss_pred hhhhcCCCCCeeEeccceEEEccCceEeehhhhhhhhhhh--HHHHHHHHhhhhhhhh--hccccchhhhHHhhhhcCcc
Confidence 222211000 00011246889999999854321 1122222211111111 112 1223345688888876
Q ss_pred C-------------CchHHHHhccccee
Q 016911 358 W-------------ELDAAMLRRLEKRV 372 (380)
Q Consensus 358 ~-------------~Ld~aLlrRF~~~I 372 (380)
. .|+.||++|||..+
T Consensus 493 yGRYnprrs~e~NI~LPaALLSRFDll~ 520 (721)
T KOG0482|consen 493 YGRYNPRRSPEQNINLPAALLSRFDLLW 520 (721)
T ss_pred ccccCcccChhHhcCCcHHHHHhhhhhh
Confidence 5 29999999998654
No 339
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=97.26 E-value=0.0048 Score=54.80 Aligned_cols=24 Identities=25% Similarity=0.465 Sum_probs=20.7
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHh
Q 016911 242 WKGILLFGPPGTGKTMLAKAVATE 265 (380)
Q Consensus 242 ~~~vLL~GppGtGKT~la~ala~~ 265 (380)
++.+++.||.|+|||+++++++-.
T Consensus 21 ~~~~~i~G~NgsGKS~~l~~i~~~ 44 (162)
T cd03227 21 GSLTIITGPNGSGKSTILDAIGLA 44 (162)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 358999999999999999998543
No 340
>PRK13949 shikimate kinase; Provisional
Probab=97.25 E-value=0.00027 Score=63.60 Aligned_cols=32 Identities=41% Similarity=0.599 Sum_probs=29.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhcCCeEEEEe
Q 016911 243 KGILLFGPPGTGKTMLAKAVATECKTTFFNIS 274 (380)
Q Consensus 243 ~~vLL~GppGtGKT~la~ala~~l~~~~v~v~ 274 (380)
+.++|.|+||+||||+++.+|+.++.+++..+
T Consensus 2 ~~I~liG~~GsGKstl~~~La~~l~~~~id~D 33 (169)
T PRK13949 2 ARIFLVGYMGAGKTTLGKALARELGLSFIDLD 33 (169)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCCeeccc
Confidence 36899999999999999999999999887766
No 341
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=97.24 E-value=0.00038 Score=63.37 Aligned_cols=33 Identities=36% Similarity=0.683 Sum_probs=26.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcCCeEEEEecchh
Q 016911 244 GILLFGPPGTGKTMLAKAVATECKTTFFNISASSV 278 (380)
Q Consensus 244 ~vLL~GppGtGKT~la~ala~~l~~~~v~v~~s~l 278 (380)
.++|.||||+||||+|+.||+.++. ..++..++
T Consensus 2 riiilG~pGaGK~T~A~~La~~~~i--~hlstgd~ 34 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKLGL--PHLDTGDI 34 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCC--cEEcHhHH
Confidence 5899999999999999999999654 44554433
No 342
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=97.23 E-value=0.0039 Score=55.55 Aligned_cols=28 Identities=39% Similarity=0.632 Sum_probs=25.8
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHhc
Q 016911 239 LSPWKGILLFGPPGTGKTMLAKAVATEC 266 (380)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~la~ala~~l 266 (380)
+.++..+.+.||+|+|||||++.++..+
T Consensus 24 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 51 (166)
T cd03223 24 IKPGDRLLITGPSGTGKSSLFRALAGLW 51 (166)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 5778899999999999999999999876
No 343
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=97.22 E-value=0.00071 Score=64.86 Aligned_cols=71 Identities=27% Similarity=0.356 Sum_probs=44.8
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHhcC---CeEEEEec-chhhhh------hc-cchHHHHHHHHHHHHhcCCeEEEEcC
Q 016911 241 PWKGILLFGPPGTGKTMLAKAVATECK---TTFFNISA-SSVVSK------WR-GDSEKLIKVLFELARHHAPSTIFLDE 309 (380)
Q Consensus 241 ~~~~vLL~GppGtGKT~la~ala~~l~---~~~v~v~~-s~l~~~------~~-ge~e~~l~~lf~~A~~~~p~ILfIDE 309 (380)
...++++.|++|+||||+++++...++ ..++.+.- .++.-. .. .........++..+....|++|+++|
T Consensus 126 ~~~~ili~G~tGSGKTT~l~all~~i~~~~~~iv~iEd~~E~~l~~~~~~~~~~~~~~~~~~~~l~~~LR~~pD~iiigE 205 (270)
T PF00437_consen 126 GRGNILISGPTGSGKTTLLNALLEEIPPEDERIVTIEDPPELRLPGPNQIQIQTRRDEISYEDLLKSALRQDPDVIIIGE 205 (270)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHCHTTTSEEEEEESSS-S--SCSSEEEEEEETTTBSHHHHHHHHTTS--SEEEESC
T ss_pred cceEEEEECCCccccchHHHHHhhhccccccceEEeccccceeecccceEEEEeecCcccHHHHHHHHhcCCCCcccccc
Confidence 357899999999999999999999883 33443332 122111 00 11223445566777778899999999
Q ss_pred cc
Q 016911 310 ID 311 (380)
Q Consensus 310 iD 311 (380)
+.
T Consensus 206 iR 207 (270)
T PF00437_consen 206 IR 207 (270)
T ss_dssp E-
T ss_pred cC
Confidence 95
No 344
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=97.22 E-value=0.00063 Score=67.98 Aligned_cols=71 Identities=21% Similarity=0.283 Sum_probs=45.0
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHhcC----CeEEEEec-chhhh---------hhccchHHHHHHHHHHHHhcCCeEEE
Q 016911 241 PWKGILLFGPPGTGKTMLAKAVATECK----TTFFNISA-SSVVS---------KWRGDSEKLIKVLFELARHHAPSTIF 306 (380)
Q Consensus 241 ~~~~vLL~GppGtGKT~la~ala~~l~----~~~v~v~~-s~l~~---------~~~ge~e~~l~~lf~~A~~~~p~ILf 306 (380)
+...+++.||+|+||||+++++...++ ..++.+.- .++.. ..++.........++.+....|++|+
T Consensus 121 ~~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~E~~~~~~~~~i~q~evg~~~~~~~~~l~~~lr~~pd~i~ 200 (343)
T TIGR01420 121 PRGLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDPIEYVHRNKRSLINQREVGLDTLSFANALRAALREDPDVIL 200 (343)
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCChhhhccCccceEEccccCCCCcCHHHHHHHhhccCCCEEE
Confidence 346789999999999999999988664 23333321 12110 01122112234455666678899999
Q ss_pred EcCcc
Q 016911 307 LDEID 311 (380)
Q Consensus 307 IDEiD 311 (380)
+||+.
T Consensus 201 vgEir 205 (343)
T TIGR01420 201 IGEMR 205 (343)
T ss_pred EeCCC
Confidence 99994
No 345
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=97.21 E-value=0.0026 Score=60.79 Aligned_cols=26 Identities=35% Similarity=0.507 Sum_probs=23.1
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHh
Q 016911 240 SPWKGILLFGPPGTGKTMLAKAVATE 265 (380)
Q Consensus 240 ~~~~~vLL~GppGtGKT~la~ala~~ 265 (380)
.....+.|+|++|+|||+||..++..
T Consensus 17 ~~~~~v~I~G~~G~GKT~LA~~~~~~ 42 (287)
T PF00931_consen 17 NEVRVVAIVGMGGIGKTTLARQVARD 42 (287)
T ss_dssp TSSEEEEEEESTTSSHHHHHHHHHCH
T ss_pred CCeEEEEEEcCCcCCcceeeeecccc
Confidence 34578999999999999999999987
No 346
>PRK13948 shikimate kinase; Provisional
Probab=97.20 E-value=0.00041 Score=63.38 Aligned_cols=35 Identities=23% Similarity=0.303 Sum_probs=32.1
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHhcCCeEEEEe
Q 016911 240 SPWKGILLFGPPGTGKTMLAKAVATECKTTFFNIS 274 (380)
Q Consensus 240 ~~~~~vLL~GppGtGKT~la~ala~~l~~~~v~v~ 274 (380)
+++.+++|.|.+|+||||+++.+|+.++.+|+..+
T Consensus 8 ~~~~~I~LiG~~GsGKSTvg~~La~~lg~~~iD~D 42 (182)
T PRK13948 8 RPVTWVALAGFMGTGKSRIGWELSRALMLHFIDTD 42 (182)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEECC
Confidence 56689999999999999999999999999998666
No 347
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.20 E-value=0.0016 Score=58.25 Aligned_cols=28 Identities=32% Similarity=0.350 Sum_probs=25.5
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHhc
Q 016911 239 LSPWKGILLFGPPGTGKTMLAKAVATEC 266 (380)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~la~ala~~l 266 (380)
+.++..+.|.||+|+|||||++.++...
T Consensus 23 i~~Ge~~~i~G~nGsGKStLl~~l~G~~ 50 (173)
T cd03230 23 VEKGEIYGLLGPNGAGKTTLIKIILGLL 50 (173)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 5677889999999999999999999865
No 348
>KOG0479 consensus DNA replication licensing factor, MCM3 component [Replication, recombination and repair]
Probab=97.20 E-value=0.00096 Score=70.00 Aligned_cols=149 Identities=22% Similarity=0.251 Sum_probs=84.1
Q ss_pred ccccchHHHHHHHHHHHhccccCccccccc--CCCCceEEEEcCCCCcHHHHHHHHHHhcCCeEEEEec-c------hhh
Q 016911 209 ESIKGLENAKRLLKEAVVMPIKYPKYFTGL--LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISA-S------SVV 279 (380)
Q Consensus 209 ~~l~Gl~~~k~~L~~~l~~~l~~~~~~~~~--~~~~~~vLL~GppGtGKT~la~ala~~l~~~~v~v~~-s------~l~ 279 (380)
-.|.|.+.+|+.+.-.+.-- ..+....+ +...-++|+.|.|.+.||-|++.+.+.....+-.... + .-+
T Consensus 301 PSI~GH~~vKkAillLLlGG--vEk~L~NGshlRGDINiLlvGDPSvAKSQLLRyVLntAplAI~TTGRGSSGVGLTAAV 378 (818)
T KOG0479|consen 301 PSIYGHDYVKKAILLLLLGG--VEKNLENGSHLRGDINILLVGDPSVAKSQLLRYVLNTAPLAIATTGRGSSGVGLTAAV 378 (818)
T ss_pred cccccHHHHHHHHHHHHhcc--ceeccCCCceeccceeEEEecCchHHHHHHHHHHHhcccccccccCCCCCCccceeEE
Confidence 47889999988877544221 11122222 4455789999999999999999998766332211110 0 001
Q ss_pred hhhccchHHHHHH-HHHHHHhcCCeEEEEcCcchhhhhccccchhhHHHHHHHHHHHHHh------cCC-ccCCCcEEEE
Q 016911 280 SKWRGDSEKLIKV-LFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQM------DGL-TQSDELVFVL 351 (380)
Q Consensus 280 ~~~~ge~e~~l~~-lf~~A~~~~p~ILfIDEiD~l~~~~~~~~~~~~~~~~i~~~Ll~~l------dgl-~~~~~~VlVI 351 (380)
..-....++++.. ..-. ...+|++|||+|++..- .+..+.+...+- -|+ ..-+..+.|+
T Consensus 379 TtD~eTGERRLEAGAMVL---ADRGVVCIDEFDKMsDi----------DRvAIHEVMEQqtVTIaKAGIHasLNARCSVl 445 (818)
T KOG0479|consen 379 TTDQETGERRLEAGAMVL---ADRGVVCIDEFDKMSDI----------DRVAIHEVMEQQTVTIAKAGIHASLNARCSVL 445 (818)
T ss_pred eeccccchhhhhcCceEE---ccCceEEehhcccccch----------hHHHHHHHHhcceEEeEeccchhhhccceeee
Confidence 1111223444321 1111 23579999999998431 122222222221 122 1123457899
Q ss_pred EEeCCCCC-------------chHHHHhccccee
Q 016911 352 AATNLPWE-------------LDAAMLRRLEKRV 372 (380)
Q Consensus 352 atTN~~~~-------------Ld~aLlrRF~~~I 372 (380)
|++|.... |+..|++||+-.+
T Consensus 446 AAANPvyG~Yd~~k~P~eNIgLpDSLLSRFDLlF 479 (818)
T KOG0479|consen 446 AAANPVYGQYDQSKTPMENIGLPDSLLSRFDLLF 479 (818)
T ss_pred eecCccccccCCCCChhhccCCcHHHHhhhcEEE
Confidence 99998752 8899999998543
No 349
>PRK14530 adenylate kinase; Provisional
Probab=97.20 E-value=0.00038 Score=64.64 Aligned_cols=31 Identities=32% Similarity=0.507 Sum_probs=27.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhcCCeEEEE
Q 016911 243 KGILLFGPPGTGKTMLAKAVATECKTTFFNI 273 (380)
Q Consensus 243 ~~vLL~GppGtGKT~la~ala~~l~~~~v~v 273 (380)
..++|.||||+||||+++.+|..++.+++..
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~~~~~~~i~~ 34 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAEEFGVEHVTT 34 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCeEEec
Confidence 4699999999999999999999999777643
No 350
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=97.20 E-value=0.0014 Score=63.32 Aligned_cols=92 Identities=16% Similarity=0.215 Sum_probs=55.3
Q ss_pred ccccccchHHHHHHHHHHHhccccCcccccccCCCCceEEEEcCCCCcHHHHHHHHHHhcC---CeEEEEe-cchhhhh-
Q 016911 207 KWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECK---TTFFNIS-ASSVVSK- 281 (380)
Q Consensus 207 ~~~~l~Gl~~~k~~L~~~l~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~l~---~~~v~v~-~s~l~~~- 281 (380)
.++++.-..+..+.+.+.+. .+...+++.||+|+||||+++++...+. ..++.+. ..++.-.
T Consensus 58 ~l~~lg~~~~~~~~l~~~~~-------------~~~GlilisG~tGSGKTT~l~all~~i~~~~~~iitiEdp~E~~~~~ 124 (264)
T cd01129 58 DLEKLGLKPENLEIFRKLLE-------------KPHGIILVTGPTGSGKTTTLYSALSELNTPEKNIITVEDPVEYQIPG 124 (264)
T ss_pred CHHHcCCCHHHHHHHHHHHh-------------cCCCEEEEECCCCCcHHHHHHHHHhhhCCCCCeEEEECCCceecCCC
Confidence 45555544555555555432 2335689999999999999999977663 2344432 1121110
Q ss_pred -----hccchHHHHHHHHHHHHhcCCeEEEEcCcc
Q 016911 282 -----WRGDSEKLIKVLFELARHHAPSTIFLDEID 311 (380)
Q Consensus 282 -----~~ge~e~~l~~lf~~A~~~~p~ILfIDEiD 311 (380)
...+...........+....|++|+++|+.
T Consensus 125 ~~q~~v~~~~~~~~~~~l~~~lR~~PD~i~vgEiR 159 (264)
T cd01129 125 INQVQVNEKAGLTFARGLRAILRQDPDIIMVGEIR 159 (264)
T ss_pred ceEEEeCCcCCcCHHHHHHHHhccCCCEEEeccCC
Confidence 001111234556666777889999999995
No 351
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=97.19 E-value=0.00037 Score=60.56 Aligned_cols=29 Identities=31% Similarity=0.568 Sum_probs=25.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHhcCCeEEEE
Q 016911 245 ILLFGPPGTGKTMLAKAVATECKTTFFNI 273 (380)
Q Consensus 245 vLL~GppGtGKT~la~ala~~l~~~~v~v 273 (380)
++|.|+||+||||+|+.++..++..++..
T Consensus 2 i~l~G~~GsGKST~a~~l~~~~~~~~i~~ 30 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAERLGAPFIDG 30 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHhhcCCEEEeC
Confidence 68999999999999999999988766543
No 352
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=97.19 E-value=0.00047 Score=79.09 Aligned_cols=131 Identities=24% Similarity=0.195 Sum_probs=76.0
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHhcCCeEEEEecchh------hhhh-ccc--hHHHHH-HHHHHHHhcCCeEEEEcCc
Q 016911 241 PWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSV------VSKW-RGD--SEKLIK-VLFELARHHAPSTIFLDEI 310 (380)
Q Consensus 241 ~~~~vLL~GppGtGKT~la~ala~~l~~~~v~v~~s~l------~~~~-~ge--~e~~l~-~lf~~A~~~~p~ILfIDEi 310 (380)
-.+++||.|.||+|||+|..++|++.|..++.++.++- ++.+ .++ .+-..+ .-|-.|. ..+.-++|||+
T Consensus 1542 v~kpilLEGsPGVGKTSlItaLAr~tG~kliRINLSeQTdL~DLfGsd~Pve~~Gef~w~dapfL~am-r~G~WVlLDEi 1620 (4600)
T COG5271 1542 VGKPILLEGSPGVGKTSLITALARKTGKKLIRINLSEQTDLCDLFGSDLPVEEGGEFRWMDAPFLHAM-RDGGWVLLDEI 1620 (4600)
T ss_pred cCCceeecCCCCccHHHHHHHHHHHhcCceEEeeccccchHHHHhCCCCCcccCceeEecccHHHHHh-hcCCEEEeehh
Confidence 34789999999999999999999999999999998743 2221 111 111111 1222232 23568999999
Q ss_pred chhhhhccccchhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCCCC------CchHHHHhcccceeEec
Q 016911 311 DAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPW------ELDAAMLRRLEKRVSFS 375 (380)
Q Consensus 311 D~l~~~~~~~~~~~~~~~~i~~~Ll~~ldgl~~~~~~VlVIatTN~~~------~Ld~aLlrRF~~~I~~p 375 (380)
.-....-- .+-+.+...--...+.++|..-.-..+..|.||-|.-+ .|+..++.||.. +.+.
T Consensus 1621 NLaSQSVl--EGLNacLDhR~eayIPEld~~f~~HpnfrVFAaqNPq~qggGRKgLPkSF~nRFsv-V~~d 1688 (4600)
T COG5271 1621 NLASQSVL--EGLNACLDHRREAYIPELDKTFDVHPNFRVFAAQNPQDQGGGRKGLPKSFLNRFSV-VKMD 1688 (4600)
T ss_pred hhhHHHHH--HHHHHHHhhccccccccccceeeccCCeeeeeecCchhcCCCcccCCHHHhhhhhe-EEec
Confidence 75432100 00011111111122333433323335577777777654 399999999964 4444
No 353
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=97.18 E-value=0.00036 Score=59.81 Aligned_cols=30 Identities=30% Similarity=0.572 Sum_probs=27.6
Q ss_pred EEEEcCCCCcHHHHHHHHHHhcCCeEEEEe
Q 016911 245 ILLFGPPGTGKTMLAKAVATECKTTFFNIS 274 (380)
Q Consensus 245 vLL~GppGtGKT~la~ala~~l~~~~v~v~ 274 (380)
+.+.|+|||||||+|+.+|..++.+++..+
T Consensus 2 I~i~G~~GsGKst~a~~la~~~~~~~~~~~ 31 (147)
T cd02020 2 IAIDGPAGSGKSTVAKLLAKKLGLPYLDTG 31 (147)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCceeccc
Confidence 679999999999999999999999987766
No 354
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=97.17 E-value=0.00047 Score=74.20 Aligned_cols=52 Identities=35% Similarity=0.551 Sum_probs=43.9
Q ss_pred cCCCCccccccchHHHHHHHHHHHhccccCcccccccCCCCceEEEEcCCCCcHHHHHHHHHHhcC
Q 016911 202 GSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECK 267 (380)
Q Consensus 202 ~~p~~~~~~l~Gl~~~k~~L~~~l~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~l~ 267 (380)
..|...|++++|++++++.|...+.. +++++|+||||||||+++++++..++
T Consensus 24 ~~~~~~~~~vigq~~a~~~L~~~~~~--------------~~~~l~~G~~G~GKttla~~l~~~l~ 75 (637)
T PRK13765 24 EVPERLIDQVIGQEHAVEVIKKAAKQ--------------RRHVMMIGSPGTGKSMLAKAMAELLP 75 (637)
T ss_pred ccCcccHHHcCChHHHHHHHHHHHHh--------------CCeEEEECCCCCcHHHHHHHHHHHcC
Confidence 44667899999999999988876532 25899999999999999999999874
No 355
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=97.17 E-value=0.0012 Score=63.26 Aligned_cols=30 Identities=27% Similarity=0.433 Sum_probs=25.7
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHhcCC
Q 016911 239 LSPWKGILLFGPPGTGKTMLAKAVATECKT 268 (380)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~la~ala~~l~~ 268 (380)
+..+..++|.||+|+||||+++.+++.+..
T Consensus 13 i~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~ 42 (249)
T cd01128 13 IGKGQRGLIVAPPKAGKTTLLQSIANAITK 42 (249)
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhcccc
Confidence 345678999999999999999999988743
No 356
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=97.17 E-value=0.0027 Score=57.23 Aligned_cols=28 Identities=29% Similarity=0.431 Sum_probs=25.8
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHhc
Q 016911 239 LSPWKGILLFGPPGTGKTMLAKAVATEC 266 (380)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~la~ala~~l 266 (380)
+.++..+.|.||+|+|||||++.++...
T Consensus 22 i~~G~~~~l~G~nGsGKStLl~~i~G~~ 49 (180)
T cd03214 22 IEAGEIVGILGPNGAGKSTLLKTLAGLL 49 (180)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 5778899999999999999999999876
No 357
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=97.16 E-value=0.0039 Score=65.20 Aligned_cols=81 Identities=21% Similarity=0.247 Sum_probs=56.7
Q ss_pred ccccCCCCceEEEEcCCCCcHHHHHHHHHHhc---CCeEEEEecchhhhhhc------c---------------------
Q 016911 235 FTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKWR------G--------------------- 284 (380)
Q Consensus 235 ~~~~~~~~~~vLL~GppGtGKT~la~ala~~l---~~~~v~v~~s~l~~~~~------g--------------------- 284 (380)
+.+.+.++..+|+.||||+|||+++..++... +-+.+++...+-..... |
T Consensus 256 lgGG~~~gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s~eEs~~~i~~~~~~lg~~~~~~~~~g~l~~~~~~p~~ 335 (484)
T TIGR02655 256 CGGGFFKDSIILATGATGTGKTLLVSKFLENACANKERAILFAYEESRAQLLRNAYSWGIDFEEMEQQGLLKIICAYPES 335 (484)
T ss_pred hcCCccCCcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCHHHHHHHHHHcCCChHHHhhCCcEEEEEccccc
Confidence 34457888899999999999999998887755 44566665533211110 0
Q ss_pred -chHHHHHHHHHHHHhcCCeEEEEcCcchhhh
Q 016911 285 -DSEKLIKVLFELARHHAPSTIFLDEIDAIIS 315 (380)
Q Consensus 285 -e~e~~l~~lf~~A~~~~p~ILfIDEiD~l~~ 315 (380)
..+..+..+.+......|.+|+||-+..+..
T Consensus 336 ~~~~~~~~~i~~~i~~~~~~~vvIDsi~~~~~ 367 (484)
T TIGR02655 336 AGLEDHLQIIKSEIADFKPARIAIDSLSALAR 367 (484)
T ss_pred CChHHHHHHHHHHHHHcCCCEEEEcCHHHHHH
Confidence 1245666677777777899999999987754
No 358
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=97.15 E-value=0.0014 Score=59.57 Aligned_cols=72 Identities=26% Similarity=0.402 Sum_probs=45.7
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHhcCC--eEEEEecc-hhhhh---hc----------cchHHHHHHHHHHHHhcCCe
Q 016911 240 SPWKGILLFGPPGTGKTMLAKAVATECKT--TFFNISAS-SVVSK---WR----------GDSEKLIKVLFELARHHAPS 303 (380)
Q Consensus 240 ~~~~~vLL~GppGtGKT~la~ala~~l~~--~~v~v~~s-~l~~~---~~----------ge~e~~l~~lf~~A~~~~p~ 303 (380)
+.+..+++.||+|+||||++++++..+.. ..+.+... ++... +. +........+...+....|+
T Consensus 23 ~~g~~i~I~G~tGSGKTTll~aL~~~i~~~~~~i~ied~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lR~~pd 102 (186)
T cd01130 23 EARKNILISGGTGSGKTTLLNALLAFIPPDERIITIEDTAELQLPHPNWVRLVTRPGNVEGSGEVTMADLLRSALRMRPD 102 (186)
T ss_pred hCCCEEEEECCCCCCHHHHHHHHHhhcCCCCCEEEECCccccCCCCCCEEEEEEecCCCCCCCccCHHHHHHHHhccCCC
Confidence 45688999999999999999999987732 22222111 11100 00 11122345566666777899
Q ss_pred EEEEcCcc
Q 016911 304 TIFLDEID 311 (380)
Q Consensus 304 ILfIDEiD 311 (380)
+++++|+-
T Consensus 103 ~i~igEir 110 (186)
T cd01130 103 RIIVGEVR 110 (186)
T ss_pred EEEEEccC
Confidence 99999994
No 359
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=97.15 E-value=0.00035 Score=61.77 Aligned_cols=33 Identities=39% Similarity=0.631 Sum_probs=29.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhcCCeEEEEe
Q 016911 242 WKGILLFGPPGTGKTMLAKAVATECKTTFFNIS 274 (380)
Q Consensus 242 ~~~vLL~GppGtGKT~la~ala~~l~~~~v~v~ 274 (380)
..++|++|.|||||||++..+|..++.+++.++
T Consensus 7 ~PNILvtGTPG~GKstl~~~lae~~~~~~i~is 39 (176)
T KOG3347|consen 7 RPNILVTGTPGTGKSTLAERLAEKTGLEYIEIS 39 (176)
T ss_pred CCCEEEeCCCCCCchhHHHHHHHHhCCceEehh
Confidence 368999999999999999999999998876543
No 360
>PRK10536 hypothetical protein; Provisional
Probab=97.15 E-value=0.005 Score=59.29 Aligned_cols=23 Identities=39% Similarity=0.498 Sum_probs=21.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHh
Q 016911 243 KGILLFGPPGTGKTMLAKAVATE 265 (380)
Q Consensus 243 ~~vLL~GppGtGKT~la~ala~~ 265 (380)
..+++.||+|||||+||.+++..
T Consensus 75 ~lV~i~G~aGTGKT~La~a~a~~ 97 (262)
T PRK10536 75 QLIFATGEAGCGKTWISAAKAAE 97 (262)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 48999999999999999999884
No 361
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=97.14 E-value=0.00043 Score=62.44 Aligned_cols=29 Identities=38% Similarity=0.659 Sum_probs=25.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHhcCCeEEEE
Q 016911 245 ILLFGPPGTGKTMLAKAVATECKTTFFNI 273 (380)
Q Consensus 245 vLL~GppGtGKT~la~ala~~l~~~~v~v 273 (380)
+++.|+||+||||+++.||..++..++.+
T Consensus 2 I~i~G~pGsGKst~a~~La~~~~~~~i~~ 30 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKYGLPHIST 30 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeEEEC
Confidence 78999999999999999999998766543
No 362
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=97.13 E-value=0.0041 Score=58.22 Aligned_cols=38 Identities=26% Similarity=0.288 Sum_probs=29.8
Q ss_pred cCCCCceEEEEcCCCCcHHHHHHHHHHhc----CCeEEEEec
Q 016911 238 LLSPWKGILLFGPPGTGKTMLAKAVATEC----KTTFFNISA 275 (380)
Q Consensus 238 ~~~~~~~vLL~GppGtGKT~la~ala~~l----~~~~v~v~~ 275 (380)
++.++..++|.|+||+|||+++..++... +.+++.+++
T Consensus 9 Gl~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~ 50 (242)
T cd00984 9 GLQPGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSL 50 (242)
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeC
Confidence 45677889999999999999998876544 566666654
No 363
>PF14516 AAA_35: AAA-like domain
Probab=97.13 E-value=0.0038 Score=62.09 Aligned_cols=39 Identities=21% Similarity=0.151 Sum_probs=32.5
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHhc---CCeEEEEecchh
Q 016911 240 SPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSV 278 (380)
Q Consensus 240 ~~~~~vLL~GppGtGKT~la~ala~~l---~~~~v~v~~s~l 278 (380)
+++..+.+.||..+|||+++..+.+.+ +...+.+++..+
T Consensus 29 ~~G~~~~I~apRq~GKTSll~~l~~~l~~~~~~~v~id~~~~ 70 (331)
T PF14516_consen 29 QPGSYIRIKAPRQMGKTSLLLRLLERLQQQGYRCVYIDLQQL 70 (331)
T ss_pred cCCCEEEEECcccCCHHHHHHHHHHHHHHCCCEEEEEEeecC
Confidence 567889999999999999998887666 677778887654
No 364
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=97.13 E-value=0.0064 Score=56.67 Aligned_cols=39 Identities=23% Similarity=0.296 Sum_probs=29.2
Q ss_pred ccCCCCceEEEEcCCCCcHHHHHHHHHHhc---CCeEEEEec
Q 016911 237 GLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISA 275 (380)
Q Consensus 237 ~~~~~~~~vLL~GppGtGKT~la~ala~~l---~~~~v~v~~ 275 (380)
+.+.++..+++.|+||+|||+++..++... +.+.+.++.
T Consensus 15 GGi~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is~ 56 (229)
T TIGR03881 15 GGIPRGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVTT 56 (229)
T ss_pred CCCcCCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEEc
Confidence 456788899999999999999998776432 445555553
No 365
>PRK14531 adenylate kinase; Provisional
Probab=97.12 E-value=0.00047 Score=62.43 Aligned_cols=31 Identities=26% Similarity=0.532 Sum_probs=27.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhcCCeEEEE
Q 016911 243 KGILLFGPPGTGKTMLAKAVATECKTTFFNI 273 (380)
Q Consensus 243 ~~vLL~GppGtGKT~la~ala~~l~~~~v~v 273 (380)
..++++||||+||||+++.+|..++.+.+.+
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~g~~~is~ 33 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAHGLRHLST 33 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeEec
Confidence 4689999999999999999999998776543
No 366
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=97.12 E-value=0.00038 Score=62.98 Aligned_cols=33 Identities=27% Similarity=0.494 Sum_probs=30.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhcCCeEEEEec
Q 016911 243 KGILLFGPPGTGKTMLAKAVATECKTTFFNISA 275 (380)
Q Consensus 243 ~~vLL~GppGtGKT~la~ala~~l~~~~v~v~~ 275 (380)
.+++|.|++|+||||+.+++|+.++.+|+..|.
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L~~~F~D~D~ 35 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKALNLPFIDTDQ 35 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHcCCCcccchH
Confidence 579999999999999999999999999986663
No 367
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=97.11 E-value=0.0067 Score=58.82 Aligned_cols=37 Identities=22% Similarity=0.249 Sum_probs=28.6
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHhc---CCeEEEEecc
Q 016911 240 SPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISAS 276 (380)
Q Consensus 240 ~~~~~vLL~GppGtGKT~la~ala~~l---~~~~v~v~~s 276 (380)
.+++.++++||+|+||||++..+|..+ +..+..+++.
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D 109 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGD 109 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 445778889999999999999998766 5556555554
No 368
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=97.11 E-value=0.00043 Score=61.04 Aligned_cols=29 Identities=31% Similarity=0.539 Sum_probs=25.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHhcCCeEEEE
Q 016911 245 ILLFGPPGTGKTMLAKAVATECKTTFFNI 273 (380)
Q Consensus 245 vLL~GppGtGKT~la~ala~~l~~~~v~v 273 (380)
+++.||||+||||+++.++..++..++..
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~~~~v~~ 29 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLGAKFIEG 29 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcCCeEEeC
Confidence 47899999999999999999998766543
No 369
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.10 E-value=0.0035 Score=64.04 Aligned_cols=68 Identities=26% Similarity=0.324 Sum_probs=44.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcCCeEEEEecchhhhhhccchHHHHHHHHHHHHhcCCeEEEEcCcchh
Q 016911 244 GILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAI 313 (380)
Q Consensus 244 ~vLL~GppGtGKT~la~ala~~l~~~~v~v~~s~l~~~~~ge~e~~l~~lf~~A~~~~p~ILfIDEiD~l 313 (380)
-++++||.+|||||+++.+...+....+.++..+.......- ....+... .+.......||||||..+
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~~~~~~iy~~~~d~~~~~~~l-~d~~~~~~-~~~~~~~~yifLDEIq~v 106 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKGLLEEIIYINFDDLRLDRIEL-LDLLRAYI-ELKEREKSYIFLDEIQNV 106 (398)
T ss_pred EEEEECCccccHHHHHHHHHhhCCcceEEEEecchhcchhhH-HHHHHHHH-HhhccCCceEEEecccCc
Confidence 899999999999999999988886555666655554332211 11122222 222214469999999876
No 370
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=97.10 E-value=0.0014 Score=53.91 Aligned_cols=24 Identities=38% Similarity=0.544 Sum_probs=20.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhc
Q 016911 243 KGILLFGPPGTGKTMLAKAVATEC 266 (380)
Q Consensus 243 ~~vLL~GppGtGKT~la~ala~~l 266 (380)
+++++.||+|+|||+++..++..+
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~ 24 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILEL 24 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHH
Confidence 368999999999999888877665
No 371
>PRK05973 replicative DNA helicase; Provisional
Probab=97.10 E-value=0.0053 Score=58.43 Aligned_cols=41 Identities=32% Similarity=0.342 Sum_probs=31.5
Q ss_pred ccccCCCCceEEEEcCCCCcHHHHHHHHHHhc---CCeEEEEec
Q 016911 235 FTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISA 275 (380)
Q Consensus 235 ~~~~~~~~~~vLL~GppGtGKT~la~ala~~l---~~~~v~v~~ 275 (380)
..+++.++..+++.|+||+|||+++..++... +.+.++++.
T Consensus 57 l~GGl~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfSl 100 (237)
T PRK05973 57 LFSQLKPGDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFTL 100 (237)
T ss_pred hcCCCCCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEE
Confidence 44567888899999999999999998776544 656655554
No 372
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=97.10 E-value=0.0013 Score=65.48 Aligned_cols=72 Identities=22% Similarity=0.322 Sum_probs=48.2
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHhcCC--eEEEEec-chhhh-----------hh--ccchHHHHHHHHHHHHhcCCe
Q 016911 240 SPWKGILLFGPPGTGKTMLAKAVATECKT--TFFNISA-SSVVS-----------KW--RGDSEKLIKVLFELARHHAPS 303 (380)
Q Consensus 240 ~~~~~vLL~GppGtGKT~la~ala~~l~~--~~v~v~~-s~l~~-----------~~--~ge~e~~l~~lf~~A~~~~p~ 303 (380)
+...++++.|++|+||||+++++...... .++.+.- .++.- .. .+...-....+.+.+....|+
T Consensus 158 ~~~~nili~G~tgSGKTTll~aL~~~ip~~~ri~tiEd~~El~l~~~~n~~~~~~~~~~~~~~~~~~~~ll~~~LR~~PD 237 (332)
T PRK13900 158 ISKKNIIISGGTSTGKTTFTNAALREIPAIERLITVEDAREIVLSNHPNRVHLLASKGGQGRAKVTTQDLIEACLRLRPD 237 (332)
T ss_pred HcCCcEEEECCCCCCHHHHHHHHHhhCCCCCeEEEecCCCccccccCCCEEEEEecCCCCCcCcCcHHHHHHHHhccCCC
Confidence 45589999999999999999999988742 3333211 11110 00 111222346677888888999
Q ss_pred EEEEcCcc
Q 016911 304 TIFLDEID 311 (380)
Q Consensus 304 ILfIDEiD 311 (380)
.|++.|+-
T Consensus 238 ~IivGEiR 245 (332)
T PRK13900 238 RIIVGELR 245 (332)
T ss_pred eEEEEecC
Confidence 99999985
No 373
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=97.09 E-value=0.0015 Score=64.20 Aligned_cols=71 Identities=25% Similarity=0.361 Sum_probs=46.8
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHhcC-----CeEEEEecc-hhhhh-------hccchHHHHHHHHHHHHhcCCeEEEE
Q 016911 241 PWKGILLFGPPGTGKTMLAKAVATECK-----TTFFNISAS-SVVSK-------WRGDSEKLIKVLFELARHHAPSTIFL 307 (380)
Q Consensus 241 ~~~~vLL~GppGtGKT~la~ala~~l~-----~~~v~v~~s-~l~~~-------~~ge~e~~l~~lf~~A~~~~p~ILfI 307 (380)
...++++.|++|+||||++++++..+. ..++.+.-. ++.-. ...........++..+....|+.|++
T Consensus 131 ~~~~ilI~G~tGSGKTTll~al~~~i~~~~~~~ri~tiEd~~El~~~~~~~v~~~~~~~~~~~~~~l~~aLR~~pD~iiv 210 (299)
T TIGR02782 131 ARKNILVVGGTGSGKTTLANALLAEIAKNDPTDRVVIIEDTRELQCAAPNVVQLRTSDDAISMTRLLKATLRLRPDRIIV 210 (299)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHHhhccCCCceEEEECCchhhcCCCCCEEEEEecCCCCCHHHHHHHHhcCCCCEEEE
Confidence 457899999999999999999998762 233333221 11100 00111114556777888889999999
Q ss_pred cCcc
Q 016911 308 DEID 311 (380)
Q Consensus 308 DEiD 311 (380)
.|+-
T Consensus 211 GEiR 214 (299)
T TIGR02782 211 GEVR 214 (299)
T ss_pred eccC
Confidence 9984
No 374
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=97.08 E-value=0.0035 Score=60.98 Aligned_cols=38 Identities=26% Similarity=0.301 Sum_probs=29.1
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHhc----C-CeEEEEecch
Q 016911 240 SPWKGILLFGPPGTGKTMLAKAVATEC----K-TTFFNISASS 277 (380)
Q Consensus 240 ~~~~~vLL~GppGtGKT~la~ala~~l----~-~~~v~v~~s~ 277 (380)
..+..++|.||+|+||||++..+|..+ + ..+..+++..
T Consensus 192 ~~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~ 234 (282)
T TIGR03499 192 EQGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDT 234 (282)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCc
Confidence 455788999999999999999998765 3 4555566543
No 375
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.08 E-value=0.003 Score=58.28 Aligned_cols=72 Identities=24% Similarity=0.257 Sum_probs=41.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhc---CCeEEEEecchhh----------hhhc---------c-chHHHHHHHHHHHH
Q 016911 242 WKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVV----------SKWR---------G-DSEKLIKVLFELAR 298 (380)
Q Consensus 242 ~~~vLL~GppGtGKT~la~ala~~l---~~~~v~v~~s~l~----------~~~~---------g-e~e~~l~~lf~~A~ 298 (380)
|+.++|.||+|+||||.+-.+|..+ +..+-.+++.... .... . +.....+...+...
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~~~ 80 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEKFR 80 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHHHh
Confidence 3578999999999999998888766 3343333332110 0000 1 12334444555555
Q ss_pred hcCCeEEEEcCcchh
Q 016911 299 HHAPSTIFLDEIDAI 313 (380)
Q Consensus 299 ~~~p~ILfIDEiD~l 313 (380)
...-++|+||-...-
T Consensus 81 ~~~~D~vlIDT~Gr~ 95 (196)
T PF00448_consen 81 KKGYDLVLIDTAGRS 95 (196)
T ss_dssp HTTSSEEEEEE-SSS
T ss_pred hcCCCEEEEecCCcc
Confidence 544579999987543
No 376
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=97.07 E-value=0.0027 Score=67.62 Aligned_cols=59 Identities=29% Similarity=0.337 Sum_probs=39.3
Q ss_pred cccchHHHHHH---hhhcccchheeeecc------ccCCC--ceeeeecCCCccceeeeEEEecccchhh
Q 016911 10 LDFDIRALTKC---LKEGIITSRFIISKF------IIGPP--HAFFYSFGSPPFQFSLAIQLAGCCSVET 68 (380)
Q Consensus 10 ~~~~~~~~~~~---~~~~~~~~~~~~~~~------~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (380)
+..||+-+|+. |--|++.|-..+.-| ..|++ +++.|||++|.+-.-+++..++-||+-+
T Consensus 154 i~eDi~~~t~~t~~l~~g~l~s~islisF~~iLw~lsg~~~~~~~g~~~~I~g~mv~~~i~Ya~~~s~~~ 223 (604)
T COG4178 154 IQEDIRNFTETTLDLSFGLLQSVISLISFTGILWSLSGGLAFTIGGFSFGIPGYMVWAVIIYAISASLLT 223 (604)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHccCcceEeecccccccchHHHHHHHHHHHHHHHHH
Confidence 34788877763 445666554444333 45766 5678999999998887777666666544
No 377
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.07 E-value=0.0039 Score=58.15 Aligned_cols=23 Identities=52% Similarity=0.712 Sum_probs=21.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhc
Q 016911 244 GILLFGPPGTGKTMLAKAVATEC 266 (380)
Q Consensus 244 ~vLL~GppGtGKT~la~ala~~l 266 (380)
-++|+|+||+||||+|+-+|+++
T Consensus 3 LiIlTGyPgsGKTtfakeLak~L 25 (261)
T COG4088 3 LIILTGYPGSGKTTFAKELAKEL 25 (261)
T ss_pred eEEEecCCCCCchHHHHHHHHHH
Confidence 47899999999999999999998
No 378
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=97.06 E-value=0.0047 Score=56.43 Aligned_cols=28 Identities=32% Similarity=0.497 Sum_probs=25.8
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHhc
Q 016911 239 LSPWKGILLFGPPGTGKTMLAKAVATEC 266 (380)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~la~ala~~l 266 (380)
+.++..+.|.||+|+|||||++.++..+
T Consensus 32 i~~Ge~~~l~G~nGsGKStLl~~i~Gl~ 59 (194)
T cd03213 32 AKPGELTAIMGPSGAGKSTLLNALAGRR 59 (194)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 5778899999999999999999999976
No 379
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=97.06 E-value=0.0032 Score=62.13 Aligned_cols=41 Identities=20% Similarity=0.284 Sum_probs=31.6
Q ss_pred ccCCCCceEEEEcCCCCcHHHHHHHHHHhc---------CCeEEEEecch
Q 016911 237 GLLSPWKGILLFGPPGTGKTMLAKAVATEC---------KTTFFNISASS 277 (380)
Q Consensus 237 ~~~~~~~~vLL~GppGtGKT~la~ala~~l---------~~~~v~v~~s~ 277 (380)
+++..+.-++++||||+|||+++..+|... +...++++..+
T Consensus 97 GGi~~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~ 146 (317)
T PRK04301 97 GGIETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEG 146 (317)
T ss_pred CCccCCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCC
Confidence 456677889999999999999999988652 33666776644
No 380
>PRK13695 putative NTPase; Provisional
Probab=97.05 E-value=0.0038 Score=55.86 Aligned_cols=23 Identities=43% Similarity=0.608 Sum_probs=20.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhc
Q 016911 244 GILLFGPPGTGKTMLAKAVATEC 266 (380)
Q Consensus 244 ~vLL~GppGtGKT~la~ala~~l 266 (380)
.++|.|++|+||||+++.+++.+
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l 24 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELL 24 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999987765
No 381
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=97.05 E-value=0.015 Score=57.79 Aligned_cols=36 Identities=22% Similarity=0.187 Sum_probs=28.4
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHhc---CCeEEEEec
Q 016911 240 SPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISA 275 (380)
Q Consensus 240 ~~~~~vLL~GppGtGKT~la~ala~~l---~~~~v~v~~ 275 (380)
.++..++|.||+|+||||++..+|..+ +..+..+++
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~ 150 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAG 150 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEec
Confidence 345788999999999999999999877 445555554
No 382
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=97.04 E-value=0.0044 Score=60.82 Aligned_cols=41 Identities=22% Similarity=0.279 Sum_probs=31.6
Q ss_pred ccCCCCceEEEEcCCCCcHHHHHHHHHHhc---------CCeEEEEecch
Q 016911 237 GLLSPWKGILLFGPPGTGKTMLAKAVATEC---------KTTFFNISASS 277 (380)
Q Consensus 237 ~~~~~~~~vLL~GppGtGKT~la~ala~~l---------~~~~v~v~~s~ 277 (380)
+++..+.-++++||||+|||+++..+|... +...++++..+
T Consensus 90 GGi~~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~ 139 (310)
T TIGR02236 90 GGIETQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTEN 139 (310)
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCC
Confidence 445667888999999999999999887653 34677777654
No 383
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=97.03 E-value=0.00093 Score=67.63 Aligned_cols=69 Identities=23% Similarity=0.291 Sum_probs=44.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhcC-----CeEEEEecc-hhh-----------hhhccchHHHHHHHHHHHHhcCCeEE
Q 016911 243 KGILLFGPPGTGKTMLAKAVATECK-----TTFFNISAS-SVV-----------SKWRGDSEKLIKVLFELARHHAPSTI 305 (380)
Q Consensus 243 ~~vLL~GppGtGKT~la~ala~~l~-----~~~v~v~~s-~l~-----------~~~~ge~e~~l~~lf~~A~~~~p~IL 305 (380)
..+++.||+|+||||+++++...+. ...+.+.-. ++. ...++..........+.+....|++|
T Consensus 150 GlilI~G~TGSGKTT~l~al~~~i~~~~~~~~IvtiEdp~E~~~~~~~~~~~~~q~evg~~~~~~~~~l~~aLR~~PD~I 229 (372)
T TIGR02525 150 GLGLICGETGSGKSTLAASIYQHCGETYPDRKIVTYEDPIEYILGSPDDLLPPAQSQIGRDVDSFANGIRLALRRAPKII 229 (372)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEecCchhccCCCceeecccccccCCCccCHHHHHHHhhccCCCEE
Confidence 5789999999999999999987662 344444321 211 00112111233455666777889999
Q ss_pred EEcCcc
Q 016911 306 FLDEID 311 (380)
Q Consensus 306 fIDEiD 311 (380)
+++|+.
T Consensus 230 ~vGEiR 235 (372)
T TIGR02525 230 GVGEIR 235 (372)
T ss_pred eeCCCC
Confidence 999995
No 384
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=97.03 E-value=0.00067 Score=60.29 Aligned_cols=32 Identities=28% Similarity=0.465 Sum_probs=28.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhcCCeEEEEe
Q 016911 243 KGILLFGPPGTGKTMLAKAVATECKTTFFNIS 274 (380)
Q Consensus 243 ~~vLL~GppGtGKT~la~ala~~l~~~~v~v~ 274 (380)
..++|.|++|+||||+++.+|..++.+++..+
T Consensus 3 ~~i~~~G~~GsGKst~~~~la~~lg~~~~d~D 34 (171)
T PRK03731 3 QPLFLVGARGCGKTTVGMALAQALGYRFVDTD 34 (171)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEEEcc
Confidence 46889999999999999999999999988655
No 385
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.03 E-value=0.0055 Score=56.87 Aligned_cols=25 Identities=24% Similarity=0.324 Sum_probs=21.6
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHH
Q 016911 240 SPWKGILLFGPPGTGKTMLAKAVAT 264 (380)
Q Consensus 240 ~~~~~vLL~GppGtGKT~la~ala~ 264 (380)
..+..++|.||.|+|||++++.++.
T Consensus 27 ~~~~~~~l~G~n~~GKstll~~i~~ 51 (204)
T cd03282 27 GSSRFHIITGPNMSGKSTYLKQIAL 51 (204)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 4457799999999999999999974
No 386
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.02 E-value=0.01 Score=60.66 Aligned_cols=73 Identities=21% Similarity=0.216 Sum_probs=44.8
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHhc---CCeEEEEecchhh-------hhh---------ccchHHHHHHHHHHHHh-c
Q 016911 241 PWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVV-------SKW---------RGDSEKLIKVLFELARH-H 300 (380)
Q Consensus 241 ~~~~vLL~GppGtGKT~la~ala~~l---~~~~v~v~~s~l~-------~~~---------~ge~e~~l~~lf~~A~~-~ 300 (380)
.++.++|.||+|+||||++..||..+ +..+..+++.... ..| .......+......+.. .
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~~~ 319 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEA 319 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHhcc
Confidence 34789999999999999999999877 3344444443211 111 01233344444444432 2
Q ss_pred CCeEEEEcCcchh
Q 016911 301 APSTIFLDEIDAI 313 (380)
Q Consensus 301 ~p~ILfIDEiD~l 313 (380)
..++|+||-....
T Consensus 320 ~~DvVLIDTaGRs 332 (436)
T PRK11889 320 RVDYILIDTAGKN 332 (436)
T ss_pred CCCEEEEeCcccc
Confidence 3579999988654
No 387
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=97.02 E-value=0.0024 Score=56.02 Aligned_cols=34 Identities=26% Similarity=0.498 Sum_probs=27.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHhc---CCeEEEEecchh
Q 016911 245 ILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSV 278 (380)
Q Consensus 245 vLL~GppGtGKT~la~ala~~l---~~~~v~v~~s~l 278 (380)
+++.|+||+||||+++.++..+ +...+.++...+
T Consensus 2 i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~~d~~ 38 (149)
T cd02027 2 IWLTGLSGSGKSTIARALEEKLFQRGRPVYVLDGDNV 38 (149)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCHHH
Confidence 6899999999999999999988 556666665443
No 388
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=97.02 E-value=0.00081 Score=60.55 Aligned_cols=34 Identities=26% Similarity=0.613 Sum_probs=30.3
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhcCCeEEEEec
Q 016911 242 WKGILLFGPPGTGKTMLAKAVATECKTTFFNISA 275 (380)
Q Consensus 242 ~~~vLL~GppGtGKT~la~ala~~l~~~~v~v~~ 275 (380)
...++|.|++|+||||+++.+|+.++.+++..+.
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l~~~~vd~D~ 37 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQ 37 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHcCCcEEECCc
Confidence 3579999999999999999999999998877664
No 389
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=97.01 E-value=0.011 Score=52.85 Aligned_cols=23 Identities=30% Similarity=0.336 Sum_probs=19.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhc
Q 016911 244 GILLFGPPGTGKTMLAKAVATEC 266 (380)
Q Consensus 244 ~vLL~GppGtGKT~la~ala~~l 266 (380)
.+.+|+++|.|||++|-++|-..
T Consensus 4 ~i~vy~g~G~Gkt~~a~g~~~ra 26 (159)
T cd00561 4 LIQVYTGNGKGKTTAALGLALRA 26 (159)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 57788999999999999887655
No 390
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=97.01 E-value=0.0011 Score=61.94 Aligned_cols=39 Identities=31% Similarity=0.445 Sum_probs=29.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcCCeEEEEecchhhhhh
Q 016911 244 GILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKW 282 (380)
Q Consensus 244 ~vLL~GppGtGKT~la~ala~~l~~~~v~v~~s~l~~~~ 282 (380)
-++|+||+|||||.+|-++|+.++.+++..+.-......
T Consensus 3 v~~i~GpT~tGKt~~ai~lA~~~g~pvI~~Driq~y~~l 41 (233)
T PF01745_consen 3 VYLIVGPTGTGKTALAIALAQKTGAPVISLDRIQCYPEL 41 (233)
T ss_dssp EEEEE-STTSSHHHHHHHHHHHH--EEEEE-SGGG-GGG
T ss_pred EEEEECCCCCChhHHHHHHHHHhCCCEEEecceeccccc
Confidence 478999999999999999999999999999977665543
No 391
>PTZ00088 adenylate kinase 1; Provisional
Probab=97.01 E-value=0.00074 Score=63.87 Aligned_cols=32 Identities=31% Similarity=0.584 Sum_probs=27.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhcCCeEEEEe
Q 016911 243 KGILLFGPPGTGKTMLAKAVATECKTTFFNIS 274 (380)
Q Consensus 243 ~~vLL~GppGtGKT~la~ala~~l~~~~v~v~ 274 (380)
..+++.||||+||||+|+.+|+.++.+++.++
T Consensus 7 mrIvl~G~PGsGK~T~a~~La~~~g~~~is~g 38 (229)
T PTZ00088 7 LKIVLFGAPGVGKGTFAEILSKKENLKHINMG 38 (229)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCcEEECC
Confidence 45999999999999999999999987765443
No 392
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.01 E-value=0.0064 Score=57.26 Aligned_cols=26 Identities=23% Similarity=0.202 Sum_probs=22.9
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHH
Q 016911 239 LSPWKGILLFGPPGTGKTMLAKAVAT 264 (380)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~la~ala~ 264 (380)
..++..++|.||.|+|||++.+.++.
T Consensus 28 ~~~g~~~~itG~N~~GKStll~~i~~ 53 (222)
T cd03287 28 AEGGYCQIITGPNMGGKSSYIRQVAL 53 (222)
T ss_pred ecCCcEEEEECCCCCCHHHHHHHHHH
Confidence 35567889999999999999999987
No 393
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=97.00 E-value=0.0011 Score=65.20 Aligned_cols=73 Identities=23% Similarity=0.388 Sum_probs=47.1
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHhcCC--eEEEEec-chhhhh---h---------ccchHHHHHHHHHHHHhcCCe
Q 016911 239 LSPWKGILLFGPPGTGKTMLAKAVATECKT--TFFNISA-SSVVSK---W---------RGDSEKLIKVLFELARHHAPS 303 (380)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~la~ala~~l~~--~~v~v~~-s~l~~~---~---------~ge~e~~l~~lf~~A~~~~p~ 303 (380)
+..+.++++.||+|+||||+++++++.+.. ..+.+.- .++... . .+...-....++..+....|+
T Consensus 141 v~~~~~ili~G~tGsGKTTll~al~~~~~~~~~iv~ied~~El~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~Lr~~pd 220 (308)
T TIGR02788 141 IASRKNIIISGGTGSGKTTFLKSLVDEIPKDERIITIEDTREIFLPHPNYVHLFYSKGGQGLAKVTPKDLLQSCLRMRPD 220 (308)
T ss_pred hhCCCEEEEECCCCCCHHHHHHHHHccCCccccEEEEcCccccCCCCCCEEEEEecCCCCCcCccCHHHHHHHHhcCCCC
Confidence 356689999999999999999999987732 2222211 111100 0 011122345566777778899
Q ss_pred EEEEcCcc
Q 016911 304 TIFLDEID 311 (380)
Q Consensus 304 ILfIDEiD 311 (380)
+|++||+-
T Consensus 221 ~ii~gE~r 228 (308)
T TIGR02788 221 RIILGELR 228 (308)
T ss_pred eEEEeccC
Confidence 99999995
No 394
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=97.00 E-value=0.0097 Score=52.08 Aligned_cols=24 Identities=25% Similarity=0.486 Sum_probs=18.8
Q ss_pred ceEEEEcCCCCcHHH-HHHHHHHhc
Q 016911 243 KGILLFGPPGTGKTM-LAKAVATEC 266 (380)
Q Consensus 243 ~~vLL~GppGtGKT~-la~ala~~l 266 (380)
..+++.||+|+|||+ ++..+...+
T Consensus 25 ~~~~i~~~~GsGKT~~~~~~~~~~~ 49 (201)
T smart00487 25 RDVILAAPTGSGKTLAALLPALEAL 49 (201)
T ss_pred CcEEEECCCCCchhHHHHHHHHHHh
Confidence 689999999999999 555555544
No 395
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.99 E-value=0.0069 Score=56.71 Aligned_cols=121 Identities=23% Similarity=0.306 Sum_probs=72.8
Q ss_pred cccCCCCceEEEEcCCCCcHHHHHHHHHHhc---CCeEEEEecchhh---------------------------------
Q 016911 236 TGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVV--------------------------------- 279 (380)
Q Consensus 236 ~~~~~~~~~vLL~GppGtGKT~la~ala~~l---~~~~v~v~~s~l~--------------------------------- 279 (380)
.++++.+.-+++.|+.|||||.|.+.++.=+ +....+++...-.
T Consensus 22 GGGiP~GsL~lIEGd~~tGKSvLsqr~~YG~L~~g~~v~yvsTe~T~refi~qm~sl~ydv~~~~l~G~l~~~~~~~~~~ 101 (235)
T COG2874 22 GGGIPVGSLILIEGDNGTGKSVLSQRFAYGFLMNGYRVTYVSTELTVREFIKQMESLSYDVSDFLLSGRLLFFPVNLEPV 101 (235)
T ss_pred cCCCccCeEEEEECCCCccHHHHHHHHHHHHHhCCceEEEEEechhHHHHHHHHHhcCCCchHHHhcceeEEEEeccccc
Confidence 4446777788999999999999999887533 2233222221000
Q ss_pred hhhccchHHHHHHHHHHHHhcCCeEEEEcCcchhhhhccccchhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCCCCC
Q 016911 280 SKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWE 359 (380)
Q Consensus 280 ~~~~ge~e~~l~~lf~~A~~~~p~ILfIDEiD~l~~~~~~~~~~~~~~~~i~~~Ll~~ldgl~~~~~~VlVIatTN~~~~ 359 (380)
....+...+.++.+.+..+.+...|++||-+..+.-..+ ...+..++..+..+....+ +|.-|-+|..
T Consensus 102 ~~~~~~~~~~L~~l~~~~k~~~~dViIIDSls~~~~~~~---------~~~vl~fm~~~r~l~d~gK---vIilTvhp~~ 169 (235)
T COG2874 102 NWGRRSARKLLDLLLEFIKRWEKDVIIIDSLSAFATYDS---------EDAVLNFMTFLRKLSDLGK---VIILTVHPSA 169 (235)
T ss_pred ccChHHHHHHHHHHHhhHHhhcCCEEEEecccHHhhccc---------HHHHHHHHHHHHHHHhCCC---EEEEEeChhh
Confidence 001123456667777777777889999999988765321 1123344455444444443 3334555677
Q ss_pred chHHHHhcc
Q 016911 360 LDAAMLRRL 368 (380)
Q Consensus 360 Ld~aLlrRF 368 (380)
++++++-|+
T Consensus 170 l~e~~~~ri 178 (235)
T COG2874 170 LDEDVLTRI 178 (235)
T ss_pred cCHHHHHHH
Confidence 888777664
No 396
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=96.99 E-value=0.0047 Score=61.11 Aligned_cols=42 Identities=19% Similarity=0.200 Sum_probs=31.3
Q ss_pred cccCCCCceEEEEcCCCCcHHHHHHHHHHh---------cCCeEEEEecch
Q 016911 236 TGLLSPWKGILLFGPPGTGKTMLAKAVATE---------CKTTFFNISASS 277 (380)
Q Consensus 236 ~~~~~~~~~vLL~GppGtGKT~la~ala~~---------l~~~~v~v~~s~ 277 (380)
.+++.++.-+.++||||+|||+++..+|-. .+...++++...
T Consensus 90 gGGi~~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~ 140 (313)
T TIGR02238 90 GGGIESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEG 140 (313)
T ss_pred CCCCcCCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCC
Confidence 445777788999999999999999887632 244667776543
No 397
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=96.99 E-value=0.0032 Score=56.87 Aligned_cols=28 Identities=25% Similarity=0.185 Sum_probs=25.6
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHhc
Q 016911 239 LSPWKGILLFGPPGTGKTMLAKAVATEC 266 (380)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~la~ala~~l 266 (380)
+.++..+.|.||+|+|||||++.++...
T Consensus 23 i~~G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (182)
T cd03215 23 VRAGEIVGIAGLVGNGQTELAEALFGLR 50 (182)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 5777889999999999999999999876
No 398
>PRK13946 shikimate kinase; Provisional
Probab=96.98 E-value=0.00067 Score=61.57 Aligned_cols=33 Identities=24% Similarity=0.478 Sum_probs=30.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhcCCeEEEEec
Q 016911 243 KGILLFGPPGTGKTMLAKAVATECKTTFFNISA 275 (380)
Q Consensus 243 ~~vLL~GppGtGKT~la~ala~~l~~~~v~v~~ 275 (380)
..+++.|.+||||||+++.+|+.++.+++..+.
T Consensus 11 ~~I~l~G~~GsGKsti~~~LA~~Lg~~~id~D~ 43 (184)
T PRK13946 11 RTVVLVGLMGAGKSTVGRRLATMLGLPFLDADT 43 (184)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCeECcCH
Confidence 679999999999999999999999999877663
No 399
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=96.98 E-value=0.0039 Score=62.46 Aligned_cols=41 Identities=22% Similarity=0.186 Sum_probs=30.6
Q ss_pred cccCCCCceEEEEcCCCCcHHHHHHHHHHhc---------CCeEEEEecc
Q 016911 236 TGLLSPWKGILLFGPPGTGKTMLAKAVATEC---------KTTFFNISAS 276 (380)
Q Consensus 236 ~~~~~~~~~vLL~GppGtGKT~la~ala~~l---------~~~~v~v~~s 276 (380)
.+++..+.-+.|+||||||||+++..+|-.. +...++++..
T Consensus 120 gGGi~~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE 169 (344)
T PLN03187 120 GGGIETRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTE 169 (344)
T ss_pred CCCCCCCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcC
Confidence 3456777889999999999999998886321 3466666663
No 400
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.98 E-value=0.0038 Score=56.11 Aligned_cols=28 Identities=29% Similarity=0.500 Sum_probs=25.3
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHhc
Q 016911 239 LSPWKGILLFGPPGTGKTMLAKAVATEC 266 (380)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~la~ala~~l 266 (380)
+.++..+.|.||+|+|||||++++++.+
T Consensus 23 i~~G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (178)
T cd03229 23 IEAGEIVALLGPSGSGKSTLLRCIAGLE 50 (178)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 5677889999999999999999999875
No 401
>PRK06547 hypothetical protein; Provisional
Probab=96.97 E-value=0.00081 Score=60.79 Aligned_cols=35 Identities=29% Similarity=0.397 Sum_probs=28.9
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHhcCCeEEEEe
Q 016911 240 SPWKGILLFGPPGTGKTMLAKAVATECKTTFFNIS 274 (380)
Q Consensus 240 ~~~~~vLL~GppGtGKT~la~ala~~l~~~~v~v~ 274 (380)
.+...+++.|++||||||+++.+++.++.+++..+
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~~~~~~~~~~d 47 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAARTGFQLVHLD 47 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhCCCeeccc
Confidence 34567888899999999999999999887766543
No 402
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=96.97 E-value=0.00068 Score=60.73 Aligned_cols=28 Identities=32% Similarity=0.536 Sum_probs=26.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHhcCCeEEE
Q 016911 245 ILLFGPPGTGKTMLAKAVATECKTTFFN 272 (380)
Q Consensus 245 vLL~GppGtGKT~la~ala~~l~~~~v~ 272 (380)
+-+.|||||||||+++.+|..++.+++.
T Consensus 3 ItIsG~pGsG~TTva~~lAe~~gl~~vs 30 (179)
T COG1102 3 ITISGLPGSGKTTVARELAEHLGLKLVS 30 (179)
T ss_pred EEeccCCCCChhHHHHHHHHHhCCceee
Confidence 5688999999999999999999999876
No 403
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.97 E-value=0.0098 Score=61.29 Aligned_cols=38 Identities=26% Similarity=0.317 Sum_probs=28.2
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHhc-----CCeEEEEecch
Q 016911 240 SPWKGILLFGPPGTGKTMLAKAVATEC-----KTTFFNISASS 277 (380)
Q Consensus 240 ~~~~~vLL~GppGtGKT~la~ala~~l-----~~~~v~v~~s~ 277 (380)
.++..++|.||+|+||||++..+|..+ +..+..+++..
T Consensus 219 ~~~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~ 261 (424)
T PRK05703 219 KQGGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDT 261 (424)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCc
Confidence 345688999999999999998887654 34566666544
No 404
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=96.96 E-value=0.0021 Score=65.34 Aligned_cols=27 Identities=30% Similarity=0.457 Sum_probs=23.5
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHhc
Q 016911 240 SPWKGILLFGPPGTGKTMLAKAVATEC 266 (380)
Q Consensus 240 ~~~~~vLL~GppGtGKT~la~ala~~l 266 (380)
..+...+|.||||+|||+|++.+++..
T Consensus 167 GkGQR~lIvgppGvGKTTLaK~Ian~I 193 (416)
T PRK09376 167 GKGQRGLIVAPPKAGKTVLLQNIANSI 193 (416)
T ss_pred ccCceEEEeCCCCCChhHHHHHHHHHH
Confidence 445678999999999999999999876
No 405
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=96.96 E-value=0.0061 Score=61.97 Aligned_cols=81 Identities=25% Similarity=0.395 Sum_probs=61.1
Q ss_pred ccCCCCceEEEEcCCCCcHHHHHHHHHHhc--CCeEEEEecchhhhhhc------c--------chHHHHHHHHHHHHhc
Q 016911 237 GLLSPWKGILLFGPPGTGKTMLAKAVATEC--KTTFFNISASSVVSKWR------G--------DSEKLIKVLFELARHH 300 (380)
Q Consensus 237 ~~~~~~~~vLL~GppGtGKT~la~ala~~l--~~~~v~v~~s~l~~~~~------g--------e~e~~l~~lf~~A~~~ 300 (380)
+.+-|+..+|+-|.||.|||||+..++..+ ..++.+++..+-..... + -.+..+..+.......
T Consensus 88 GG~V~Gs~iLIgGdPGIGKSTLLLQva~~lA~~~~vLYVsGEES~~QiklRA~RL~~~~~~l~l~aEt~~e~I~~~l~~~ 167 (456)
T COG1066 88 GGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGKVLYVSGEESLQQIKLRADRLGLPTNNLYLLAETNLEDIIAELEQE 167 (456)
T ss_pred CCcccccEEEEccCCCCCHHHHHHHHHHHHHhcCcEEEEeCCcCHHHHHHHHHHhCCCccceEEehhcCHHHHHHHHHhc
Confidence 446788899999999999999998888776 33788888765433211 1 2455667778888888
Q ss_pred CCeEEEEcCcchhhhhc
Q 016911 301 APSTIFLDEIDAIISQR 317 (380)
Q Consensus 301 ~p~ILfIDEiD~l~~~~ 317 (380)
.|.+++||-|..+....
T Consensus 168 ~p~lvVIDSIQT~~s~~ 184 (456)
T COG1066 168 KPDLVVIDSIQTLYSEE 184 (456)
T ss_pred CCCEEEEeccceeeccc
Confidence 99999999999887654
No 406
>PRK14528 adenylate kinase; Provisional
Probab=96.95 E-value=0.00079 Score=61.35 Aligned_cols=31 Identities=32% Similarity=0.578 Sum_probs=27.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhcCCeEEEE
Q 016911 243 KGILLFGPPGTGKTMLAKAVATECKTTFFNI 273 (380)
Q Consensus 243 ~~vLL~GppGtGKT~la~ala~~l~~~~v~v 273 (380)
+.+++.||||+||||+++.++..++.+.+.+
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~~~~~~is~ 32 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCERLSIPQIST 32 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeeeC
Confidence 4689999999999999999999998776543
No 407
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=96.95 E-value=0.00081 Score=60.22 Aligned_cols=30 Identities=27% Similarity=0.466 Sum_probs=25.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhcCCeEEE
Q 016911 243 KGILLFGPPGTGKTMLAKAVATECKTTFFN 272 (380)
Q Consensus 243 ~~vLL~GppGtGKT~la~ala~~l~~~~v~ 272 (380)
.-+++.||||+||||+++.++..++...+.
T Consensus 4 ~ii~i~G~~GsGKsTl~~~l~~~~g~~~~~ 33 (188)
T TIGR01360 4 KIIFIVGGPGSGKGTQCEKIVEKYGFTHLS 33 (188)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCcEEe
Confidence 468899999999999999999998765543
No 408
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=96.95 E-value=0.0013 Score=64.89 Aligned_cols=36 Identities=25% Similarity=0.456 Sum_probs=32.5
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHhcCCeEEEEe
Q 016911 239 LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNIS 274 (380)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~la~ala~~l~~~~v~v~ 274 (380)
..+...++|.|+||||||++++.+|..++.+++.++
T Consensus 130 ~~~~~~I~l~G~~GsGKStvg~~La~~Lg~~~id~D 165 (309)
T PRK08154 130 AARRRRIALIGLRGAGKSTLGRMLAARLGVPFVELN 165 (309)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEeHH
Confidence 567789999999999999999999999999998554
No 409
>PLN02200 adenylate kinase family protein
Probab=96.93 E-value=0.001 Score=63.05 Aligned_cols=38 Identities=18% Similarity=0.281 Sum_probs=30.4
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHhcCCeEEEEecchhh
Q 016911 240 SPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVV 279 (380)
Q Consensus 240 ~~~~~vLL~GppGtGKT~la~ala~~l~~~~v~v~~s~l~ 279 (380)
+.+..+++.|+|||||||+++.+|..++... ++.+++.
T Consensus 41 ~~~~ii~I~G~PGSGKsT~a~~La~~~g~~h--is~gdll 78 (234)
T PLN02200 41 KTPFITFVLGGPGSGKGTQCEKIVETFGFKH--LSAGDLL 78 (234)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhCCeE--EEccHHH
Confidence 3456789999999999999999999998654 5555554
No 410
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.92 E-value=0.015 Score=52.86 Aligned_cols=27 Identities=33% Similarity=0.461 Sum_probs=24.5
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHh
Q 016911 239 LSPWKGILLFGPPGTGKTMLAKAVATE 265 (380)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~la~ala~~ 265 (380)
+.++..+.|.||+|+|||||++.++..
T Consensus 30 i~~Ge~~~l~G~nGsGKSTLl~~l~G~ 56 (192)
T cd03232 30 VKPGTLTALMGESGAGKTTLLDVLAGR 56 (192)
T ss_pred EeCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 567789999999999999999999974
No 411
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.92 E-value=0.0044 Score=66.69 Aligned_cols=28 Identities=29% Similarity=0.520 Sum_probs=25.9
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHhc
Q 016911 239 LSPWKGILLFGPPGTGKTMLAKAVATEC 266 (380)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~la~ala~~l 266 (380)
++|+..+-|.||+|+||||++..+-+.+
T Consensus 491 i~pGe~vALVGPSGsGKSTiasLL~rfY 518 (716)
T KOG0058|consen 491 IRPGEVVALVGPSGSGKSTIASLLLRFY 518 (716)
T ss_pred eCCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 7899999999999999999999998766
No 412
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.90 E-value=0.013 Score=53.90 Aligned_cols=28 Identities=36% Similarity=0.560 Sum_probs=25.7
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHhc
Q 016911 239 LSPWKGILLFGPPGTGKTMLAKAVATEC 266 (380)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~la~ala~~l 266 (380)
+.++..+.|.||+|+|||||++.+++..
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 52 (207)
T PRK13539 25 LAAGEALVLTGPNGSGKTTLLRLIAGLL 52 (207)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 5778899999999999999999999875
No 413
>PRK02496 adk adenylate kinase; Provisional
Probab=96.90 E-value=0.00084 Score=60.56 Aligned_cols=30 Identities=27% Similarity=0.547 Sum_probs=26.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcCCeEEEE
Q 016911 244 GILLFGPPGTGKTMLAKAVATECKTTFFNI 273 (380)
Q Consensus 244 ~vLL~GppGtGKT~la~ala~~l~~~~v~v 273 (380)
.+++.||||+||||+++.++..++.+.+.+
T Consensus 3 ~i~i~G~pGsGKst~a~~la~~~~~~~i~~ 32 (184)
T PRK02496 3 RLIFLGPPGAGKGTQAVVLAEHLHIPHIST 32 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEEh
Confidence 488999999999999999999998766543
No 414
>PRK13764 ATPase; Provisional
Probab=96.90 E-value=0.0017 Score=69.43 Aligned_cols=70 Identities=21% Similarity=0.353 Sum_probs=41.7
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHhcC---CeEEEEe-cchh-----hhhhccchHHHHHHHHHHHHhcCCeEEEEcCcc
Q 016911 241 PWKGILLFGPPGTGKTMLAKAVATECK---TTFFNIS-ASSV-----VSKWRGDSEKLIKVLFELARHHAPSTIFLDEID 311 (380)
Q Consensus 241 ~~~~vLL~GppGtGKT~la~ala~~l~---~~~v~v~-~s~l-----~~~~~ge~e~~l~~lf~~A~~~~p~ILfIDEiD 311 (380)
...++|+.||||+||||++++++..+. ..+..+. ..++ ...+.. ...........+....|++|++||+-
T Consensus 256 ~~~~ILIsG~TGSGKTTll~AL~~~i~~~~riV~TiEDp~El~~~~~i~q~~~-~~~~~~~~~~~lLR~rPD~IivGEiR 334 (602)
T PRK13764 256 RAEGILIAGAPGAGKSTFAQALAEFYADMGKIVKTMESPRDLQVPPEITQYSK-LEGSMEETADILLLVRPDYTIYDEMR 334 (602)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHHHhhCCCEEEEECCCccccCCCcceEEee-ccccHHHHHHHHHhhCCCEEEECCCC
Confidence 357899999999999999999998874 2222221 1111 111110 00011222233345679999999985
No 415
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.
Probab=96.89 E-value=0.0015 Score=64.82 Aligned_cols=38 Identities=29% Similarity=0.248 Sum_probs=31.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhcCCeEEEEecchhh
Q 016911 242 WKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVV 279 (380)
Q Consensus 242 ~~~vLL~GppGtGKT~la~ala~~l~~~~v~v~~s~l~ 279 (380)
...++|.|+||+|||||++.++..++.+++.--..+..
T Consensus 162 ~~~~~~~G~~~~gkstl~~~l~~~~~~~~v~E~~R~~~ 199 (325)
T TIGR01526 162 VKTVAILGGESTGKSTLVNKLAAVFNTTSAWEYAREYV 199 (325)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhCCCEEeehhHHHH
Confidence 35799999999999999999999999888654444433
No 416
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.89 E-value=0.019 Score=52.81 Aligned_cols=29 Identities=34% Similarity=0.626 Sum_probs=26.0
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHhcC
Q 016911 239 LSPWKGILLFGPPGTGKTMLAKAVATECK 267 (380)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~la~ala~~l~ 267 (380)
+.++..+.|.||+|+|||||++.++....
T Consensus 30 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 58 (202)
T cd03233 30 VKPGEMVLVLGRPGSGCSTLLKALANRTE 58 (202)
T ss_pred ECCCcEEEEECCCCCCHHHHHHHhcccCC
Confidence 57788999999999999999999998753
No 417
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.89 E-value=0.014 Score=60.00 Aligned_cols=71 Identities=21% Similarity=0.268 Sum_probs=41.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhc----CCeEEEEecchhhh-------hh---cc---chHHHHHHHHHHHHhcCCeE
Q 016911 242 WKGILLFGPPGTGKTMLAKAVATEC----KTTFFNISASSVVS-------KW---RG---DSEKLIKVLFELARHHAPST 304 (380)
Q Consensus 242 ~~~vLL~GppGtGKT~la~ala~~l----~~~~v~v~~s~l~~-------~~---~g---e~e~~l~~lf~~A~~~~p~I 304 (380)
+..+++.||+|+||||++..+|..+ +..+..+++...-. .| .+ ........+...+.....++
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~~~~~D~ 302 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLARDGSEL 302 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHHhCCCCE
Confidence 4568899999999999999998754 33454444433111 11 01 11122333344444445678
Q ss_pred EEEcCcch
Q 016911 305 IFLDEIDA 312 (380)
Q Consensus 305 LfIDEiD~ 312 (380)
|+||=...
T Consensus 303 VLIDTaGr 310 (432)
T PRK12724 303 ILIDTAGY 310 (432)
T ss_pred EEEeCCCC
Confidence 99986543
No 418
>PRK06581 DNA polymerase III subunit delta'; Validated
Probab=96.89 E-value=0.0074 Score=57.61 Aligned_cols=121 Identities=9% Similarity=0.056 Sum_probs=78.6
Q ss_pred CceEEEEcCCC-CcHHHHHHHHHHhcCC---------eEEEEecchhhhhh-ccchHHHHHHHHHHHH----hcCCeEEE
Q 016911 242 WKGILLFGPPG-TGKTMLAKAVATECKT---------TFFNISASSVVSKW-RGDSEKLIKVLFELAR----HHAPSTIF 306 (380)
Q Consensus 242 ~~~vLL~GppG-tGKT~la~ala~~l~~---------~~v~v~~s~l~~~~-~ge~e~~l~~lf~~A~----~~~p~ILf 306 (380)
...+||.|..+ ++|..++.-++..+.. .++.+....-..+. ..-.-..+|.+...+. .....|++
T Consensus 15 shAYLfeG~n~~~~~~~~~~f~~~~l~~~~i~~~~HPD~~~I~pe~~~~~~~~~I~IdqIReL~~~l~~~p~~g~~KViI 94 (263)
T PRK06581 15 YNSWLIEAENIEQALKDLEKFIYIKLFKNSIPLENNPDYHFIARETSATSNAKNISIEQIRKLQDFLSKTSAISGYKVAI 94 (263)
T ss_pred hheeeEeCCChhhHHHHHHHHHHHHHhccCcccCCCCCEEEEeccccccccCCcccHHHHHHHHHHHhhCcccCCcEEEE
Confidence 36799999998 9999999888876622 23333321100000 0012233344433332 33456999
Q ss_pred EcCcchhhhhccccchhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCCCCCchHHHHhcccceeEecCCCC
Q 016911 307 LDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRVSFSLIAL 379 (380)
Q Consensus 307 IDEiD~l~~~~~~~~~~~~~~~~i~~~Ll~~ldgl~~~~~~VlVIatTN~~~~Ld~aLlrRF~~~I~~plPd~ 379 (380)
|+++|.+.. ...+.||..++ ..+..+++|..|..++.+.+.++||+. .+.|+.|+.
T Consensus 95 I~~ae~mt~-------------~AANALLKtLE---EPP~~t~fILit~~~~~LLpTIrSRCq-~i~~~~p~~ 150 (263)
T PRK06581 95 IYSAELMNL-------------NAANSCLKILE---DAPKNSYIFLITSRAASIISTIRSRCF-KINVRSSIL 150 (263)
T ss_pred EechHHhCH-------------HHHHHHHHhhc---CCCCCeEEEEEeCChhhCchhHhhceE-EEeCCCCCH
Confidence 999999843 34567888874 456667888889899999999999984 577887763
No 419
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=96.89 E-value=0.003 Score=59.95 Aligned_cols=34 Identities=26% Similarity=0.510 Sum_probs=27.3
Q ss_pred EEEEcCCCCcHHHHHHHHHHhc---CCeEEEEecchh
Q 016911 245 ILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSV 278 (380)
Q Consensus 245 vLL~GppGtGKT~la~ala~~l---~~~~v~v~~s~l 278 (380)
++|.|+||+||||+|+.++..+ +.+++.++...+
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~D~l 38 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLSEKNIDVIILGTDLI 38 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEccHHH
Confidence 6899999999999999999887 455666665433
No 420
>PTZ00035 Rad51 protein; Provisional
Probab=96.89 E-value=0.0067 Score=60.67 Aligned_cols=29 Identities=31% Similarity=0.306 Sum_probs=25.0
Q ss_pred cccCCCCceEEEEcCCCCcHHHHHHHHHH
Q 016911 236 TGLLSPWKGILLFGPPGTGKTMLAKAVAT 264 (380)
Q Consensus 236 ~~~~~~~~~vLL~GppGtGKT~la~ala~ 264 (380)
.+++.++.-+.++||||+|||+++..++.
T Consensus 112 gGGi~~G~iteI~G~~GsGKT~l~~~l~~ 140 (337)
T PTZ00035 112 GGGIETGSITELFGEFRTGKTQLCHTLCV 140 (337)
T ss_pred CCCCCCCeEEEEECCCCCchhHHHHHHHH
Confidence 35577788899999999999999998874
No 421
>PRK14527 adenylate kinase; Provisional
Probab=96.88 E-value=0.00084 Score=61.09 Aligned_cols=32 Identities=31% Similarity=0.498 Sum_probs=27.3
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHhcCCeEEE
Q 016911 241 PWKGILLFGPPGTGKTMLAKAVATECKTTFFN 272 (380)
Q Consensus 241 ~~~~vLL~GppGtGKT~la~ala~~l~~~~v~ 272 (380)
.+..+++.||||+||||+++.++..++...+.
T Consensus 5 ~~~~i~i~G~pGsGKsT~a~~La~~~~~~~is 36 (191)
T PRK14527 5 KNKVVIFLGPPGAGKGTQAERLAQELGLKKLS 36 (191)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCCCCC
Confidence 45679999999999999999999999865543
No 422
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=96.87 E-value=0.00076 Score=56.12 Aligned_cols=22 Identities=45% Similarity=0.643 Sum_probs=20.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHhc
Q 016911 245 ILLFGPPGTGKTMLAKAVATEC 266 (380)
Q Consensus 245 vLL~GppGtGKT~la~ala~~l 266 (380)
|+|.|+||+||||+|+.|+..+
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999986
No 423
>PRK00889 adenylylsulfate kinase; Provisional
Probab=96.87 E-value=0.005 Score=54.99 Aligned_cols=37 Identities=22% Similarity=0.260 Sum_probs=29.5
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHhc---CCeEEEEecch
Q 016911 241 PWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASS 277 (380)
Q Consensus 241 ~~~~vLL~GppGtGKT~la~ala~~l---~~~~v~v~~s~ 277 (380)
++..+.|.|+||+||||+++.++..+ +..+..++...
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~id~D~ 42 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEKLREAGYPVEVLDGDA 42 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEcCcc
Confidence 45678999999999999999999987 44456566543
No 424
>KOG1968 consensus Replication factor C, subunit RFC1 (large subunit) [Replication, recombination and repair]
Probab=96.86 E-value=0.00085 Score=74.33 Aligned_cols=120 Identities=27% Similarity=0.238 Sum_probs=74.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHhcCCeEEEEecchhhhhhc-----cc--hHHHHHHHH---H--HHHhcCCeEEEEcCcch
Q 016911 245 ILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWR-----GD--SEKLIKVLF---E--LARHHAPSTIFLDEIDA 312 (380)
Q Consensus 245 vLL~GppGtGKT~la~ala~~l~~~~v~v~~s~l~~~~~-----ge--~e~~l~~lf---~--~A~~~~p~ILfIDEiD~ 312 (380)
+++.||||.|||+.+.+.|..++..+++.|.++..+.+. ++ ....+...+ . ........||++||+|-
T Consensus 360 ~l~~G~pGigKT~~~h~~~k~~g~~v~E~Nas~~RSk~~l~~~~~~~~~s~si~~~~~~~~~~~~~~~~~~vil~devD~ 439 (871)
T KOG1968|consen 360 LLLSGPPGIGKTTAAHKAAKELGFKVVEKNASDVRSKKELLNKLGNATSSHSIKGSKKKKGNRQSLNSDHFLILMDEVDG 439 (871)
T ss_pred HHhcCCCCCCchhhHhhhhhhcccceeecCccccccccHHHhhhhccccccchhhhhcccccccccccceeEEEEecccc
Confidence 689999999999999999999999999999986654322 11 111222222 0 01111123999999998
Q ss_pred hhhhccccchhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCCCCCchHHHHhcccceeEecCCCC
Q 016911 313 IISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRVSFSLIAL 379 (380)
Q Consensus 313 l~~~~~~~~~~~~~~~~i~~~Ll~~ldgl~~~~~~VlVIatTN~~~~Ld~aLlrRF~~~I~~plPd~ 379 (380)
+.... +-.+..+...+. ...+-+|+++|........-+.|-...++|+-|+.
T Consensus 440 ~~~~d----------Rg~v~~l~~l~~-----ks~~Piv~~cndr~~p~sr~~~~~~~~l~f~kP~~ 491 (871)
T KOG1968|consen 440 MFGED----------RGGVSKLSSLCK-----KSSRPLVCTCNDRNLPKSRALSRACSDLRFSKPSS 491 (871)
T ss_pred ccchh----------hhhHHHHHHHHH-----hccCCeEEEecCCCCccccchhhhcceeeecCCcH
Confidence 86511 112233333332 11133788998877666555555556788888874
No 425
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=96.86 E-value=0.00096 Score=61.71 Aligned_cols=29 Identities=34% Similarity=0.655 Sum_probs=25.5
Q ss_pred EEEEcCCCCcHHHHHHHHHHhcCCeEEEE
Q 016911 245 ILLFGPPGTGKTMLAKAVATECKTTFFNI 273 (380)
Q Consensus 245 vLL~GppGtGKT~la~ala~~l~~~~v~v 273 (380)
+++.||||+||||+|+.+|..++.+.+.+
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~g~~~is~ 30 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKYGLPHIST 30 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCeeeh
Confidence 78999999999999999999998766543
No 426
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=96.85 E-value=0.0062 Score=66.54 Aligned_cols=28 Identities=25% Similarity=0.449 Sum_probs=25.7
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHhc
Q 016911 239 LSPWKGILLFGPPGTGKTMLAKAVATEC 266 (380)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~la~ala~~l 266 (380)
++++..+.+.|++|||||||+|.+.+.+
T Consensus 496 I~~Ge~vaIvG~SGsGKSTL~KLL~gly 523 (709)
T COG2274 496 IPPGEKVAIVGRSGSGKSTLLKLLLGLY 523 (709)
T ss_pred eCCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 6778889999999999999999999866
No 427
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=96.85 E-value=0.013 Score=61.34 Aligned_cols=41 Identities=22% Similarity=0.239 Sum_probs=30.9
Q ss_pred cccCCCCceEEEEcCCCCcHHHHHHHHHHh----cCCeEEEEecc
Q 016911 236 TGLLSPWKGILLFGPPGTGKTMLAKAVATE----CKTTFFNISAS 276 (380)
Q Consensus 236 ~~~~~~~~~vLL~GppGtGKT~la~ala~~----l~~~~v~v~~s 276 (380)
.+.+.+++.+|+.||||||||+++..++.. .+.+.++++..
T Consensus 15 ~GGlp~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~e 59 (484)
T TIGR02655 15 HGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVTFE 59 (484)
T ss_pred CCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 445778899999999999999999887442 24566666543
No 428
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=96.85 E-value=0.008 Score=54.13 Aligned_cols=81 Identities=26% Similarity=0.359 Sum_probs=45.3
Q ss_pred cccCCCCceEEEEcCCCCcHHHHHHHHHHhc-------------CCeEEEEecchhhhh----h---ccc----------
Q 016911 236 TGLLSPWKGILLFGPPGTGKTMLAKAVATEC-------------KTTFFNISASSVVSK----W---RGD---------- 285 (380)
Q Consensus 236 ~~~~~~~~~vLL~GppGtGKT~la~ala~~l-------------~~~~v~v~~s~l~~~----~---~ge---------- 285 (380)
.+++.++.-+++.||||+|||+++..++..+ +.+++.++...-... + ...
T Consensus 26 ~g~~~~g~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~~~~~~~rl~~~~~~~~~~~~~~~~ 105 (193)
T PF13481_consen 26 DGLLPRGELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDSESQIARRLRALLQDYDDDANLFFV 105 (193)
T ss_dssp TTEE-TTSEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-HHHHHHHHHHHHTTS-HHHHHHHH
T ss_pred CCcccCCeEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCCHHHHHHHHHHHhcccCCccceEEe
Confidence 3445566789999999999999998887654 235555554321100 0 000
Q ss_pred -------------------hHHHHHHHHHHHHh-cCCeEEEEcCcchhhhh
Q 016911 286 -------------------SEKLIKVLFELARH-HAPSTIFLDEIDAIISQ 316 (380)
Q Consensus 286 -------------------~e~~l~~lf~~A~~-~~p~ILfIDEiD~l~~~ 316 (380)
....+..+.+.+.. ..+.+|+||-+..+...
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~lvviD~l~~~~~~ 156 (193)
T PF13481_consen 106 DLSNWGCIRLFEPDSGGPLLDEDLEELEAALKELYGPDLVVIDPLQSLHDG 156 (193)
T ss_dssp HH--E-EE---TTS---TTSHHHHHHHHHHHTT----SEEEEE-GGGG--S
T ss_pred eccccccceeeecccccccchHHHHHHHHHHhhcCCCcEEEEcCHHHHhcC
Confidence 12233445555565 56889999999999765
No 429
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=96.85 E-value=0.0032 Score=62.54 Aligned_cols=71 Identities=21% Similarity=0.316 Sum_probs=46.2
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHhc-----CCeEEEEe-cchhhhh------hccchHHHHHHHHHHHHhcCCeEEEEc
Q 016911 241 PWKGILLFGPPGTGKTMLAKAVATEC-----KTTFFNIS-ASSVVSK------WRGDSEKLIKVLFELARHHAPSTIFLD 308 (380)
Q Consensus 241 ~~~~vLL~GppGtGKT~la~ala~~l-----~~~~v~v~-~s~l~~~------~~ge~e~~l~~lf~~A~~~~p~ILfID 308 (380)
...++++.|++|+||||++++++... +..++.+. ..++.-. +.....-....+...+....|+.|++.
T Consensus 143 ~~~nilI~G~tGSGKTTll~aL~~~i~~~~~~~rivtiEd~~El~~~~~n~v~l~~~~~~~~~~lv~~aLR~~PD~IivG 222 (323)
T PRK13833 143 SRLNIVISGGTGSGKTTLANAVIAEIVASAPEDRLVILEDTAEIQCAAENAVALHTSDTVDMARLLKSTMRLRPDRIIVG 222 (323)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHHHhcCCCCceEEEecCCcccccCCCCEEEeccCCCcCHHHHHHHHhCCCCCEEEEe
Confidence 45789999999999999999998875 22333332 1222110 001111234566777788899999999
Q ss_pred Ccc
Q 016911 309 EID 311 (380)
Q Consensus 309 EiD 311 (380)
|+-
T Consensus 223 EiR 225 (323)
T PRK13833 223 EVR 225 (323)
T ss_pred ecC
Confidence 983
No 430
>PRK04040 adenylate kinase; Provisional
Probab=96.83 E-value=0.0013 Score=60.25 Aligned_cols=35 Identities=23% Similarity=0.376 Sum_probs=28.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhc--CCeEEEEecchh
Q 016911 242 WKGILLFGPPGTGKTMLAKAVATEC--KTTFFNISASSV 278 (380)
Q Consensus 242 ~~~vLL~GppGtGKT~la~ala~~l--~~~~v~v~~s~l 278 (380)
+..++++|+|||||||+++.++..+ +..+ ++.+++
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~l~~~~~~--~~~g~~ 38 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEKLKEDYKI--VNFGDV 38 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHhccCCeE--EecchH
Confidence 3578999999999999999999999 5555 444444
No 431
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=96.82 E-value=0.004 Score=61.83 Aligned_cols=72 Identities=22% Similarity=0.419 Sum_probs=46.9
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHhc-----CCeEEEEec-chhhh---h---hccchHHHHHHHHHHHHhcCCeEEEE
Q 016911 240 SPWKGILLFGPPGTGKTMLAKAVATEC-----KTTFFNISA-SSVVS---K---WRGDSEKLIKVLFELARHHAPSTIFL 307 (380)
Q Consensus 240 ~~~~~vLL~GppGtGKT~la~ala~~l-----~~~~v~v~~-s~l~~---~---~~ge~e~~l~~lf~~A~~~~p~ILfI 307 (380)
....++++.|++|+||||++++++... +..++.+.- .++.- . +....+.....++..+....|+.|++
T Consensus 146 ~~~~~ilI~G~tGSGKTTll~aL~~~~~~~~~~~rivtIEd~~El~~~~~~~v~~~~~~~~~~~~ll~~aLR~~PD~Iiv 225 (319)
T PRK13894 146 RAHRNILVIGGTGSGKTTLVNAIINEMVIQDPTERVFIIEDTGEIQCAAENYVQYHTSIDVNMTALLKTTLRMRPDRILV 225 (319)
T ss_pred HcCCeEEEECCCCCCHHHHHHHHHHhhhhcCCCceEEEEcCCCccccCCCCEEEEecCCCCCHHHHHHHHhcCCCCEEEE
Confidence 455899999999999999999999763 122332221 12110 0 10111223566777888889999999
Q ss_pred cCcc
Q 016911 308 DEID 311 (380)
Q Consensus 308 DEiD 311 (380)
.|+-
T Consensus 226 GEiR 229 (319)
T PRK13894 226 GEVR 229 (319)
T ss_pred eccC
Confidence 9984
No 432
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=96.81 E-value=0.0043 Score=56.90 Aligned_cols=42 Identities=26% Similarity=0.325 Sum_probs=32.3
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHhc-CCeEEEEecchhhhh
Q 016911 240 SPWKGILLFGPPGTGKTMLAKAVATEC-KTTFFNISASSVVSK 281 (380)
Q Consensus 240 ~~~~~vLL~GppGtGKT~la~ala~~l-~~~~v~v~~s~l~~~ 281 (380)
..|..+++.|+||+|||+++..+...+ ...++.++..++...
T Consensus 13 ~~P~~~i~aG~~GsGKSt~~~~~~~~~~~~~~v~i~~D~~r~~ 55 (199)
T PF06414_consen 13 EKPTLIIIAGQPGSGKSTLARQLLEEFGGGGIVVIDADEFRQF 55 (199)
T ss_dssp SS-EEEEEES-TTSTTHHHHHHHHHHT-TT-SEEE-GGGGGGG
T ss_pred cCCEEEEEeCCCCCCHHHHHHHhhhhccCCCeEEEehHHHHHh
Confidence 456789999999999999999999988 778888988776543
No 433
>PRK06696 uridine kinase; Validated
Probab=96.81 E-value=0.003 Score=59.05 Aligned_cols=39 Identities=21% Similarity=0.176 Sum_probs=31.5
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHhc---CCeEEEEecchhh
Q 016911 241 PWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVV 279 (380)
Q Consensus 241 ~~~~vLL~GppGtGKT~la~ala~~l---~~~~v~v~~s~l~ 279 (380)
.+.-|.+.|++|+||||+|+.|+..+ +.+++.++..++.
T Consensus 21 ~~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf~ 62 (223)
T PRK06696 21 RPLRVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDFH 62 (223)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecccccc
Confidence 34678899999999999999999998 5667776655553
No 434
>PRK00279 adk adenylate kinase; Reviewed
Probab=96.81 E-value=0.0012 Score=61.18 Aligned_cols=30 Identities=33% Similarity=0.613 Sum_probs=26.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcCCeEEEE
Q 016911 244 GILLFGPPGTGKTMLAKAVATECKTTFFNI 273 (380)
Q Consensus 244 ~vLL~GppGtGKT~la~ala~~l~~~~v~v 273 (380)
.++++||||+||||+++.+|..++.+.+.+
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~~~~~is~ 31 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKYGIPHIST 31 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEEC
Confidence 489999999999999999999998766553
No 435
>PF13245 AAA_19: Part of AAA domain
Probab=96.79 E-value=0.002 Score=50.40 Aligned_cols=33 Identities=33% Similarity=0.496 Sum_probs=22.0
Q ss_pred ceEEEEcCCCCcHH-HHHHHHHHhc------CCeEEEEec
Q 016911 243 KGILLFGPPGTGKT-MLAKAVATEC------KTTFFNISA 275 (380)
Q Consensus 243 ~~vLL~GppGtGKT-~la~ala~~l------~~~~v~v~~ 275 (380)
..+++.|||||||| +++..++... +..+..+..
T Consensus 11 ~~~vv~g~pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~a~ 50 (76)
T PF13245_consen 11 PLFVVQGPPGTGKTTTLAARIAELLAARADPGKRVLVLAP 50 (76)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEECC
Confidence 45667999999999 5556666555 344555544
No 436
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=96.79 E-value=0.0045 Score=63.15 Aligned_cols=28 Identities=29% Similarity=0.464 Sum_probs=25.4
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHhc
Q 016911 239 LSPWKGILLFGPPGTGKTMLAKAVATEC 266 (380)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~la~ala~~l 266 (380)
+.++..++|.||||+|||++++.+++.+
T Consensus 165 ig~Gq~~~IvG~~g~GKTtL~~~i~~~I 192 (415)
T TIGR00767 165 IGKGQRGLIVAPPKAGKTVLLQKIAQAI 192 (415)
T ss_pred eCCCCEEEEECCCCCChhHHHHHHHHhh
Confidence 5677889999999999999999999976
No 437
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=96.78 E-value=0.011 Score=62.04 Aligned_cols=79 Identities=23% Similarity=0.210 Sum_probs=50.3
Q ss_pred ccCCCCceEEEEcCCCCcHHHHHHHHHHhc----CCeEEEEecchhhhh--------------hc---------------
Q 016911 237 GLLSPWKGILLFGPPGTGKTMLAKAVATEC----KTTFFNISASSVVSK--------------WR--------------- 283 (380)
Q Consensus 237 ~~~~~~~~vLL~GppGtGKT~la~ala~~l----~~~~v~v~~s~l~~~--------------~~--------------- 283 (380)
+++.++..+|+.|+||+|||+++..++... +.+.++++..+-... +.
T Consensus 26 GG~p~Gs~~li~G~pGsGKT~l~~qf~~~~~~~~ge~~lyis~ee~~~~i~~~~~~~g~d~~~~~~~g~l~~~~~~~~~~ 105 (509)
T PRK09302 26 GGLPKGRPTLVSGTAGTGKTLFALQFLVNGIKRFDEPGVFVTFEESPEDIIRNVASFGWDLQKLIDEGKLFILDASPDPS 105 (509)
T ss_pred CCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCEEEEEccCCHHHHHHHHHHcCCCHHHHhhCCeEEEEecCcccc
Confidence 346778899999999999999998775432 445555554322110 00
Q ss_pred -------cchHHHHHHHHHHHHhcCCeEEEEcCcchhhh
Q 016911 284 -------GDSEKLIKVLFELARHHAPSTIFLDEIDAIIS 315 (380)
Q Consensus 284 -------ge~e~~l~~lf~~A~~~~p~ILfIDEiD~l~~ 315 (380)
.+.+..+..+........+..++||-+..+..
T Consensus 106 ~~~~~~~~~~~~l~~~l~~~i~~~~~~~vVIDSls~l~~ 144 (509)
T PRK09302 106 EQEEAGEYDLEALFIRIEYAIDKIGAKRVVLDSIEALFS 144 (509)
T ss_pred cccccccccHHHHHHHHHHHHHhhCCCEEEECCHHHHHh
Confidence 01123344455556667788999999987654
No 438
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=96.78 E-value=0.013 Score=56.20 Aligned_cols=28 Identities=32% Similarity=0.399 Sum_probs=24.7
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHhc
Q 016911 239 LSPWKGILLFGPPGTGKTMLAKAVATEC 266 (380)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~la~ala~~l 266 (380)
+.++.-+-|.||.|+|||||.|++.+.+
T Consensus 27 v~~G~~~~iiGPNGaGKSTLlK~iLGll 54 (254)
T COG1121 27 VEKGEITALIGPNGAGKSTLLKAILGLL 54 (254)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 5666788999999999999999999855
No 439
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=96.76 E-value=0.0056 Score=54.50 Aligned_cols=33 Identities=33% Similarity=0.360 Sum_probs=26.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhc---CCeEEEEecc
Q 016911 244 GILLFGPPGTGKTMLAKAVATEC---KTTFFNISAS 276 (380)
Q Consensus 244 ~vLL~GppGtGKT~la~ala~~l---~~~~v~v~~s 276 (380)
.+++.|+||+|||+++..++..+ +..+..+++.
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D 37 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAAD 37 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcC
Confidence 36889999999999999998876 5566666655
No 440
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=96.76 E-value=0.0011 Score=60.05 Aligned_cols=30 Identities=30% Similarity=0.468 Sum_probs=26.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcCCeEEEEe
Q 016911 244 GILLFGPPGTGKTMLAKAVATECKTTFFNIS 274 (380)
Q Consensus 244 ~vLL~GppGtGKT~la~ala~~l~~~~v~v~ 274 (380)
.++++|.||+||||+++.++ .++..++.++
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~-~lg~~~i~l~ 31 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR-ELGYKVIELN 31 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH-HhCCceeeHH
Confidence 57899999999999999999 8888776655
No 441
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=96.76 E-value=0.0065 Score=60.20 Aligned_cols=28 Identities=32% Similarity=0.338 Sum_probs=24.6
Q ss_pred ccCCCCceEEEEcCCCCcHHHHHHHHHH
Q 016911 237 GLLSPWKGILLFGPPGTGKTMLAKAVAT 264 (380)
Q Consensus 237 ~~~~~~~~vLL~GppGtGKT~la~ala~ 264 (380)
+++.++.-+.++||||+|||+++..++.
T Consensus 91 gGi~~g~i~~i~G~~g~GKT~l~~~~~~ 118 (316)
T TIGR02239 91 GGIETGSITEIFGEFRTGKTQLCHTLAV 118 (316)
T ss_pred CCCCCCeEEEEECCCCCCcCHHHHHHHH
Confidence 4567788899999999999999998875
No 442
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=96.76 E-value=0.013 Score=64.53 Aligned_cols=79 Identities=22% Similarity=0.291 Sum_probs=51.1
Q ss_pred ccCCCCceEEEEcCCCCcHHHHHHHHHHh---cCCeEEEEecchhhhh----------------hccchHHHHHHHHHHH
Q 016911 237 GLLSPWKGILLFGPPGTGKTMLAKAVATE---CKTTFFNISASSVVSK----------------WRGDSEKLIKVLFELA 297 (380)
Q Consensus 237 ~~~~~~~~vLL~GppGtGKT~la~ala~~---l~~~~v~v~~s~l~~~----------------~~ge~e~~l~~lf~~A 297 (380)
+++.++..++++||||||||+|+..++.. .+...++++..+-... .....+..+..+-...
T Consensus 55 GGip~GsiteI~G~~GsGKTtLal~~~~~a~~~G~~v~yId~E~t~~~~~A~~lGvDl~~llv~~~~~~E~~l~~i~~lv 134 (790)
T PRK09519 55 GGLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPDYAKKLGVDTDSLLVSQPDTGEQALEIADMLI 134 (790)
T ss_pred CCccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchhHHHHHHcCCChhHeEEecCCCHHHHHHHHHHHh
Confidence 34677788999999999999999665442 3556666665432210 0112233333333444
Q ss_pred HhcCCeEEEEcCcchhhh
Q 016911 298 RHHAPSTIFLDEIDAIIS 315 (380)
Q Consensus 298 ~~~~p~ILfIDEiD~l~~ 315 (380)
....+.+|+||-+..+.+
T Consensus 135 ~~~~~~LVVIDSI~aL~~ 152 (790)
T PRK09519 135 RSGALDIVVIDSVAALVP 152 (790)
T ss_pred hcCCCeEEEEcchhhhcc
Confidence 555789999999999885
No 443
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=96.76 E-value=0.0017 Score=65.10 Aligned_cols=72 Identities=24% Similarity=0.385 Sum_probs=47.1
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHhcCC--eEEEEec-chhhhh--------h----ccchHHHHHHHHHHHHhcCCeE
Q 016911 240 SPWKGILLFGPPGTGKTMLAKAVATECKT--TFFNISA-SSVVSK--------W----RGDSEKLIKVLFELARHHAPST 304 (380)
Q Consensus 240 ~~~~~vLL~GppGtGKT~la~ala~~l~~--~~v~v~~-s~l~~~--------~----~ge~e~~l~~lf~~A~~~~p~I 304 (380)
+...++++.||+|+||||++++++..++. .++.+.- .++.-. + .+...-....++..+....|+.
T Consensus 160 ~~~~nilI~G~tGSGKTTll~aLl~~i~~~~rivtiEd~~El~l~~~~~v~l~~~~~~~~~~~~t~~~ll~~~LR~~pD~ 239 (344)
T PRK13851 160 VGRLTMLLCGPTGSGKTTMSKTLISAIPPQERLITIEDTLELVIPHENHVRLLYSKNGAGLGAVTAEHLLQASLRMRPDR 239 (344)
T ss_pred HcCCeEEEECCCCccHHHHHHHHHcccCCCCCEEEECCCccccCCCCCEEEEEeeccccCcCccCHHHHHHHHhcCCCCe
Confidence 45689999999999999999999987732 2222221 111100 0 0111223456777777888999
Q ss_pred EEEcCcc
Q 016911 305 IFLDEID 311 (380)
Q Consensus 305 LfIDEiD 311 (380)
|++.|+-
T Consensus 240 IivGEiR 246 (344)
T PRK13851 240 ILLGEMR 246 (344)
T ss_pred EEEEeeC
Confidence 9999984
No 444
>PTZ00202 tuzin; Provisional
Probab=96.74 E-value=0.037 Score=57.29 Aligned_cols=60 Identities=10% Similarity=0.090 Sum_probs=46.5
Q ss_pred cccccchHHHHHHHHHHHhccccCcccccccCCCCceEEEEcCCCCcHHHHHHHHHHhcCCeEEEEecc
Q 016911 208 WESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISAS 276 (380)
Q Consensus 208 ~~~l~Gl~~~k~~L~~~l~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~l~~~~v~v~~s 276 (380)
..+.+|.+....+|...+...- ...++-+.|.|++|||||++++.+...++.+.+.+|..
T Consensus 261 ~~~FVGReaEla~Lr~VL~~~d---------~~~privvLtG~~G~GKTTLlR~~~~~l~~~qL~vNpr 320 (550)
T PTZ00202 261 IRQFVSREAEESWVRQVLRRLD---------TAHPRIVVFTGFRGCGKSSLCRSAVRKEGMPAVFVDVR 320 (550)
T ss_pred ccCCCCcHHHHHHHHHHHhccC---------CCCceEEEEECCCCCCHHHHHHHHHhcCCceEEEECCC
Confidence 5688999999999987763210 12235788999999999999999999998776666654
No 445
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=96.74 E-value=0.0028 Score=63.40 Aligned_cols=24 Identities=50% Similarity=0.632 Sum_probs=21.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhc
Q 016911 243 KGILLFGPPGTGKTMLAKAVATEC 266 (380)
Q Consensus 243 ~~vLL~GppGtGKT~la~ala~~l 266 (380)
..+++.|.||||||.||-.++..+
T Consensus 2 ~v~~I~G~aGTGKTvla~~l~~~l 25 (352)
T PF09848_consen 2 QVILITGGAGTGKTVLALNLAKEL 25 (352)
T ss_pred eEEEEEecCCcCHHHHHHHHHHHh
Confidence 357899999999999999999987
No 446
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.73 E-value=0.014 Score=61.10 Aligned_cols=27 Identities=33% Similarity=0.549 Sum_probs=23.4
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHhc
Q 016911 240 SPWKGILLFGPPGTGKTMLAKAVATEC 266 (380)
Q Consensus 240 ~~~~~vLL~GppGtGKT~la~ala~~l 266 (380)
..+..++|.||+|+||||++..||..+
T Consensus 254 ~~g~Vi~LvGpnGvGKTTTiaKLA~~~ 280 (484)
T PRK06995 254 DRGGVFALMGPTGVGKTTTTAKLAARC 280 (484)
T ss_pred cCCcEEEEECCCCccHHHHHHHHHHHH
Confidence 345678999999999999999999866
No 447
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.73 E-value=0.0035 Score=65.10 Aligned_cols=70 Identities=29% Similarity=0.315 Sum_probs=44.5
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHhcCCeEEE-Eecchhhh------------hhccchHHHHHHHHHHHHhcCCeEEE
Q 016911 240 SPWKGILLFGPPGTGKTMLAKAVATECKTTFFN-ISASSVVS------------KWRGDSEKLIKVLFELARHHAPSTIF 306 (380)
Q Consensus 240 ~~~~~vLL~GppGtGKT~la~ala~~l~~~~v~-v~~s~l~~------------~~~ge~e~~l~~lf~~A~~~~p~ILf 306 (380)
.|...+|++||.|+||||...++.+.++.+... ++..+-+. ..+|-+ ....++.....+|+||.
T Consensus 256 ~p~GliLvTGPTGSGKTTTLY~~L~~ln~~~~nI~TiEDPVE~~~~gI~Q~qVN~k~glt---fa~~LRa~LRqDPDvIm 332 (500)
T COG2804 256 RPQGLILVTGPTGSGKTTTLYAALSELNTPERNIITIEDPVEYQLPGINQVQVNPKIGLT---FARALRAILRQDPDVIM 332 (500)
T ss_pred CCCeEEEEeCCCCCCHHHHHHHHHHHhcCCCceEEEeeCCeeeecCCcceeecccccCCC---HHHHHHHHhccCCCeEE
Confidence 455668889999999999999999988654432 11111111 111111 12344555677899999
Q ss_pred EcCcch
Q 016911 307 LDEIDA 312 (380)
Q Consensus 307 IDEiD~ 312 (380)
+.||-.
T Consensus 333 VGEIRD 338 (500)
T COG2804 333 VGEIRD 338 (500)
T ss_pred EeccCC
Confidence 999953
No 448
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=96.72 E-value=0.0031 Score=60.68 Aligned_cols=28 Identities=29% Similarity=0.388 Sum_probs=25.5
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHhc
Q 016911 239 LSPWKGILLFGPPGTGKTMLAKAVATEC 266 (380)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~la~ala~~l 266 (380)
+.++.-+.|.||.|||||||.+++++.+
T Consensus 25 i~~G~i~~iiGpNG~GKSTLLk~l~g~l 52 (258)
T COG1120 25 IPKGEITGILGPNGSGKSTLLKCLAGLL 52 (258)
T ss_pred ecCCcEEEEECCCCCCHHHHHHHHhccC
Confidence 5677889999999999999999999877
No 449
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=96.72 E-value=0.0031 Score=64.49 Aligned_cols=30 Identities=23% Similarity=0.315 Sum_probs=27.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhcCCeEEE
Q 016911 243 KGILLFGPPGTGKTMLAKAVATECKTTFFN 272 (380)
Q Consensus 243 ~~vLL~GppGtGKT~la~ala~~l~~~~v~ 272 (380)
+.|.|.|++|||||||+++||..++..++.
T Consensus 220 ~~IvI~G~~gsGKTTL~~~La~~~g~~~v~ 249 (399)
T PRK08099 220 RTVAILGGESSGKSTLVNKLANIFNTTSAW 249 (399)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHhCCCeee
Confidence 679999999999999999999999877543
No 450
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=96.72 E-value=0.0057 Score=64.08 Aligned_cols=93 Identities=16% Similarity=0.179 Sum_probs=54.4
Q ss_pred ccccccchHHHHHHHHHHHhccccCcccccccCCCCceEEEEcCCCCcHHHHHHHHHHhcC---CeEEEEec-chhhhhh
Q 016911 207 KWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECK---TTFFNISA-SSVVSKW 282 (380)
Q Consensus 207 ~~~~l~Gl~~~k~~L~~~l~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~l~---~~~v~v~~-s~l~~~~ 282 (380)
.++++.-..+..+.+...+. .+...++++||+|+||||++.++...++ ..++.+.- .++.-..
T Consensus 220 ~l~~Lg~~~~~~~~l~~~~~-------------~~~GlilitGptGSGKTTtL~a~L~~l~~~~~~iiTiEDpvE~~~~~ 286 (486)
T TIGR02533 220 DLETLGMSPELLSRFERLIR-------------RPHGIILVTGPTGSGKTTTLYAALSRLNTPERNILTVEDPVEYQIEG 286 (486)
T ss_pred CHHHcCCCHHHHHHHHHHHh-------------cCCCEEEEEcCCCCCHHHHHHHHHhccCCCCCcEEEEcCCeeeecCC
Confidence 45565555555555555442 2334578999999999999998877763 23433321 1111000
Q ss_pred -----cc-chHHHHHHHHHHHHhcCCeEEEEcCcch
Q 016911 283 -----RG-DSEKLIKVLFELARHHAPSTIFLDEIDA 312 (380)
Q Consensus 283 -----~g-e~e~~l~~lf~~A~~~~p~ILfIDEiD~ 312 (380)
+. ..........+.+....|++|++.|+-.
T Consensus 287 ~~q~~v~~~~g~~f~~~lr~~LR~dPDvI~vGEiRd 322 (486)
T TIGR02533 287 IGQIQVNPKIGLTFAAGLRAILRQDPDIIMVGEIRD 322 (486)
T ss_pred CceEEEccccCccHHHHHHHHHhcCCCEEEEeCCCC
Confidence 10 1111233455566678899999999853
No 451
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=96.71 E-value=0.0012 Score=57.73 Aligned_cols=33 Identities=33% Similarity=0.617 Sum_probs=26.5
Q ss_pred EEcCCCCcHHHHHHHHHHhcCCeEEEEecchhhhh
Q 016911 247 LFGPPGTGKTMLAKAVATECKTTFFNISASSVVSK 281 (380)
Q Consensus 247 L~GppGtGKT~la~ala~~l~~~~v~v~~s~l~~~ 281 (380)
+.||||+||||+++.||..++.. .++..++...
T Consensus 1 i~G~PgsGK~t~~~~la~~~~~~--~is~~~llr~ 33 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRYGLV--HISVGDLLRE 33 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHHTSE--EEEHHHHHHH
T ss_pred CcCCCCCChHHHHHHHHHhcCcc--eechHHHHHH
Confidence 68999999999999999999754 5566555543
No 452
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=96.71 E-value=0.0076 Score=57.33 Aligned_cols=28 Identities=25% Similarity=0.358 Sum_probs=24.9
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHhc
Q 016911 239 LSPWKGILLFGPPGTGKTMLAKAVATEC 266 (380)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~la~ala~~l 266 (380)
+.++..+=|.|++|||||||+++++...
T Consensus 30 i~~Ge~lgivGeSGsGKSTL~r~l~Gl~ 57 (252)
T COG1124 30 IERGETLGIVGESGSGKSTLARLLAGLE 57 (252)
T ss_pred ecCCCEEEEEcCCCCCHHHHHHHHhccc
Confidence 5677889999999999999999999755
No 453
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=96.71 E-value=0.018 Score=60.48 Aligned_cols=79 Identities=22% Similarity=0.231 Sum_probs=51.1
Q ss_pred ccCCCCceEEEEcCCCCcHHHHHHHHHHhc---CCeEEEEecchhhhhhc----------------------------cc
Q 016911 237 GLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKWR----------------------------GD 285 (380)
Q Consensus 237 ~~~~~~~~vLL~GppGtGKT~la~ala~~l---~~~~v~v~~s~l~~~~~----------------------------ge 285 (380)
+.+..+..+++.|+||+|||+++..++... +.+.++++..+-..... ..
T Consensus 268 GG~~~g~~~li~G~~G~GKT~l~~~~~~~~~~~g~~~~yis~e~~~~~i~~~~~~~g~~~~~~~~~g~l~i~~~~~~~~~ 347 (509)
T PRK09302 268 GGFFRGSIILVSGATGTGKTLLASKFAEAACRRGERCLLFAFEESRAQLIRNARSWGIDLEKMEEKGLLKIICARPESYG 347 (509)
T ss_pred CCCCCCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEecCCHHHHHHHHHHcCCChHHHhhcCCceeecCCcccCC
Confidence 446677889999999999999998887544 55666555432111000 01
Q ss_pred hHHHHHHHHHHHHhcCCeEEEEcCcchhhh
Q 016911 286 SEKLIKVLFELARHHAPSTIFLDEIDAIIS 315 (380)
Q Consensus 286 ~e~~l~~lf~~A~~~~p~ILfIDEiD~l~~ 315 (380)
.+..+..+........+.+++||-+..+..
T Consensus 348 ~~~~~~~i~~~i~~~~~~~vVIDslt~l~~ 377 (509)
T PRK09302 348 LEDHLIIIKREIEEFKPSRVAIDPLSALAR 377 (509)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEcCHHHHHH
Confidence 123334444555566788999999988754
No 454
>PRK04182 cytidylate kinase; Provisional
Probab=96.71 E-value=0.0016 Score=57.79 Aligned_cols=29 Identities=34% Similarity=0.551 Sum_probs=26.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcCCeEEE
Q 016911 244 GILLFGPPGTGKTMLAKAVATECKTTFFN 272 (380)
Q Consensus 244 ~vLL~GppGtGKT~la~ala~~l~~~~v~ 272 (380)
.++|.|+|||||||+++.+|..++.+++.
T Consensus 2 ~I~i~G~~GsGKstia~~la~~lg~~~id 30 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKLGLKHVS 30 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEec
Confidence 47899999999999999999999988765
No 455
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=96.68 E-value=0.0019 Score=58.65 Aligned_cols=29 Identities=38% Similarity=0.578 Sum_probs=25.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhcCCeEE
Q 016911 243 KGILLFGPPGTGKTMLAKAVATECKTTFF 271 (380)
Q Consensus 243 ~~vLL~GppGtGKT~la~ala~~l~~~~v 271 (380)
..++|.||+|+|||||++.++..++.+++
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~~~~~~~ 31 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQREQTQLL 31 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhccCCCeEE
Confidence 46899999999999999999998876554
No 456
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.68 E-value=0.0023 Score=57.30 Aligned_cols=39 Identities=26% Similarity=0.333 Sum_probs=30.0
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHhcC---CeEEEEecchh
Q 016911 240 SPWKGILLFGPPGTGKTMLAKAVATECK---TTFFNISASSV 278 (380)
Q Consensus 240 ~~~~~vLL~GppGtGKT~la~ala~~l~---~~~v~v~~s~l 278 (380)
.++..++|.|+||+||||+++.++..+. ...+.++...+
T Consensus 5 ~~~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~~~d~~ 46 (176)
T PRK05541 5 PNGYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLDGDEL 46 (176)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEecHHH
Confidence 4567899999999999999999999885 23445554333
No 457
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=96.67 E-value=0.0019 Score=62.59 Aligned_cols=34 Identities=32% Similarity=0.496 Sum_probs=26.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhc-CCeEEEEecchh
Q 016911 243 KGILLFGPPGTGKTMLAKAVATEC-KTTFFNISASSV 278 (380)
Q Consensus 243 ~~vLL~GppGtGKT~la~ala~~l-~~~~v~v~~s~l 278 (380)
..+++.|+|||||||+|+.++..+ +..+ ++...+
T Consensus 3 ~liil~G~pGSGKSTla~~L~~~~~~~~~--l~~D~~ 37 (300)
T PHA02530 3 KIILTVGVPGSGKSTWAREFAAKNPKAVN--VNRDDL 37 (300)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHCCCCEE--EeccHH
Confidence 468889999999999999999998 5444 444433
No 458
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.67 E-value=0.003 Score=61.84 Aligned_cols=71 Identities=21% Similarity=0.313 Sum_probs=47.5
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHhcCC----eEEEEec-chh--------h-hhhccchHHHHHHHHHHHHhcCCeEEE
Q 016911 241 PWKGILLFGPPGTGKTMLAKAVATECKT----TFFNISA-SSV--------V-SKWRGDSEKLIKVLFELARHHAPSTIF 306 (380)
Q Consensus 241 ~~~~vLL~GppGtGKT~la~ala~~l~~----~~v~v~~-s~l--------~-~~~~ge~e~~l~~lf~~A~~~~p~ILf 306 (380)
+..-+|.+||.||||||...++-+.+|. +.+.+.- -++ . ..-+|.-.......++.|...+|+||+
T Consensus 124 ~~GLILVTGpTGSGKSTTlAamId~iN~~~~~HIlTIEDPIE~vh~skkslI~QREvG~dT~sF~~aLraALReDPDVIl 203 (353)
T COG2805 124 PRGLILVTGPTGSGKSTTLAAMIDYINKHKAKHILTIEDPIEYVHESKKSLINQREVGRDTLSFANALRAALREDPDVIL 203 (353)
T ss_pred CCceEEEeCCCCCcHHHHHHHHHHHHhccCCcceEEecCchHhhhcchHhhhhHHHhcccHHHHHHHHHHHhhcCCCEEE
Confidence 3345788899999999999999888743 2332221 111 1 123344455555667778888999999
Q ss_pred EcCcc
Q 016911 307 LDEID 311 (380)
Q Consensus 307 IDEiD 311 (380)
+-|+-
T Consensus 204 vGEmR 208 (353)
T COG2805 204 VGEMR 208 (353)
T ss_pred Eeccc
Confidence 99984
No 459
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=96.67 E-value=0.031 Score=53.39 Aligned_cols=40 Identities=35% Similarity=0.487 Sum_probs=31.2
Q ss_pred ccCCCCceEEEEcCCCCcHHHHHHHHHHhc---CCeEEEEecc
Q 016911 237 GLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISAS 276 (380)
Q Consensus 237 ~~~~~~~~vLL~GppGtGKT~la~ala~~l---~~~~v~v~~s 276 (380)
+....+..+|++|+||||||+++..++... +.+.+.++..
T Consensus 18 GG~p~g~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs~~ 60 (260)
T COG0467 18 GGLPRGSVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVSTE 60 (260)
T ss_pred CCCcCCcEEEEEcCCCCcHHHHHHHHHHHHHhcCCcEEEEEec
Confidence 456778899999999999999998886654 5566666553
No 460
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.66 E-value=0.033 Score=58.85 Aligned_cols=29 Identities=34% Similarity=0.387 Sum_probs=24.4
Q ss_pred cCCCCceEEEEcCCCCcHHHHHHHHHHhc
Q 016911 238 LLSPWKGILLFGPPGTGKTMLAKAVATEC 266 (380)
Q Consensus 238 ~~~~~~~vLL~GppGtGKT~la~ala~~l 266 (380)
++..+..+.|+||+|+||||++..|+..+
T Consensus 346 ~l~~G~vIaLVGPtGvGKTTtaakLAa~l 374 (559)
T PRK12727 346 PLERGGVIALVGPTGAGKTTTIAKLAQRF 374 (559)
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 34567889999999999999999998754
No 461
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=96.65 E-value=0.016 Score=61.70 Aligned_cols=28 Identities=39% Similarity=0.488 Sum_probs=26.0
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHhc
Q 016911 239 LSPWKGILLFGPPGTGKTMLAKAVATEC 266 (380)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~la~ala~~l 266 (380)
++++..+.+.||+|+|||||++.+++.+
T Consensus 373 i~~G~~vaIvG~SGsGKSTL~~lL~g~~ 400 (588)
T PRK11174 373 LPAGQRIALVGPSGAGKTSLLNALLGFL 400 (588)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 6888999999999999999999999876
No 462
>PRK08233 hypothetical protein; Provisional
Probab=96.65 E-value=0.0027 Score=56.53 Aligned_cols=32 Identities=25% Similarity=0.312 Sum_probs=25.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhcC-CeEEEEe
Q 016911 243 KGILLFGPPGTGKTMLAKAVATECK-TTFFNIS 274 (380)
Q Consensus 243 ~~vLL~GppGtGKT~la~ala~~l~-~~~v~v~ 274 (380)
.-+.+.|+||+||||+|+.++..++ ..++..+
T Consensus 4 ~iI~I~G~~GsGKtTla~~L~~~l~~~~~~~~d 36 (182)
T PRK08233 4 KIITIAAVSGGGKTTLTERLTHKLKNSKALYFD 36 (182)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhCCCCceEEEC
Confidence 4578899999999999999999985 4444443
No 463
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.64 E-value=0.013 Score=60.18 Aligned_cols=28 Identities=29% Similarity=0.409 Sum_probs=23.9
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHhc
Q 016911 239 LSPWKGILLFGPPGTGKTMLAKAVATEC 266 (380)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~la~ala~~l 266 (380)
...+..+.|.||+|+||||++..||..+
T Consensus 188 ~~~g~vi~lvGpnG~GKTTtlakLA~~~ 215 (420)
T PRK14721 188 IEQGGVYALIGPTGVGKTTTTAKLAARA 215 (420)
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 3556789999999999999999998753
No 464
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=96.64 E-value=0.023 Score=51.64 Aligned_cols=24 Identities=25% Similarity=0.335 Sum_probs=21.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHh
Q 016911 242 WKGILLFGPPGTGKTMLAKAVATE 265 (380)
Q Consensus 242 ~~~vLL~GppGtGKT~la~ala~~ 265 (380)
...+++.|++|+|||+|.+.+.+.
T Consensus 41 ~~~I~iiG~~g~GKStLl~~l~~~ 64 (204)
T cd01878 41 IPTVALVGYTNAGKSTLFNALTGA 64 (204)
T ss_pred CCeEEEECCCCCCHHHHHHHHhcc
Confidence 368999999999999999999864
No 465
>PLN02674 adenylate kinase
Probab=96.64 E-value=0.002 Score=61.62 Aligned_cols=38 Identities=26% Similarity=0.536 Sum_probs=30.3
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHhcCCeEEEEecchhhh
Q 016911 241 PWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVS 280 (380)
Q Consensus 241 ~~~~vLL~GppGtGKT~la~ala~~l~~~~v~v~~s~l~~ 280 (380)
+...++|.||||+||+|+++.+|..++... ++..++..
T Consensus 30 ~~~~i~l~G~PGsGKgT~a~~La~~~~~~h--is~GdllR 67 (244)
T PLN02674 30 PDKRLILIGPPGSGKGTQSPIIKDEYCLCH--LATGDMLR 67 (244)
T ss_pred cCceEEEECCCCCCHHHHHHHHHHHcCCcE--EchhHHHH
Confidence 346799999999999999999999998654 55555543
No 466
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=96.63 E-value=0.018 Score=54.93 Aligned_cols=120 Identities=13% Similarity=0.201 Sum_probs=64.4
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHhcCC---eEEEEecchh--hhhh-----c------cchHHHHHH----HHHHHH-
Q 016911 240 SPWKGILLFGPPGTGKTMLAKAVATECKT---TFFNISASSV--VSKW-----R------GDSEKLIKV----LFELAR- 298 (380)
Q Consensus 240 ~~~~~vLL~GppGtGKT~la~ala~~l~~---~~v~v~~s~l--~~~~-----~------ge~e~~l~~----lf~~A~- 298 (380)
..+-.+++.|++|||||++++.+...+.. +++.+....- ...+ + .+.+..+.. +-+.+.
T Consensus 11 ~~~fr~viIG~sGSGKT~li~~lL~~~~~~f~~I~l~t~~~n~~~~~~i~p~~i~~~~~~e~le~~l~~~k~~I~k~~~k 90 (241)
T PF04665_consen 11 KDPFRMVIIGKSGSGKTTLIKSLLYYLRHKFDHIFLITPEYNNEYYKYIWPDHIFKVFDKEELEYILIRQKEKIEKYIKK 90 (241)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHhhcccCCEEEEEecCCchhhhhhcchhhccccccHHHHHHHHHHHHHHHHHHhhh
Confidence 34467999999999999999998776633 2232222110 1111 1 011111111 111111
Q ss_pred --h---cCCeEEEEcCcchhhhhccccchhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCCCCCchHHHHhcccceeE
Q 016911 299 --H---HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRVS 373 (380)
Q Consensus 299 --~---~~p~ILfIDEiD~l~~~~~~~~~~~~~~~~i~~~Ll~~ldgl~~~~~~VlVIatTN~~~~Ld~aLlrRF~~~I~ 373 (380)
. ..+.+|++||+..- .. -...+..++..- +.-++.+|..+.....+++.++.=.+..+-
T Consensus 91 ~~~~k~~~~~LiIlDD~~~~-------~~----k~~~l~~~~~~g-----RH~~is~i~l~Q~~~~lp~~iR~n~~y~i~ 154 (241)
T PF04665_consen 91 SPQKKNNPRFLIILDDLGDK-------KL----KSKILRQFFNNG-----RHYNISIIFLSQSYFHLPPNIRSNIDYFII 154 (241)
T ss_pred hcccCCCCCeEEEEeCCCCc-------hh----hhHHHHHHHhcc-----cccceEEEEEeeecccCCHHHhhcceEEEE
Confidence 1 23679999997431 00 112333444322 333477888888888899998776665554
Q ss_pred ec
Q 016911 374 FS 375 (380)
Q Consensus 374 ~p 375 (380)
++
T Consensus 155 ~~ 156 (241)
T PF04665_consen 155 FN 156 (241)
T ss_pred ec
Confidence 43
No 467
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=96.63 E-value=0.013 Score=59.07 Aligned_cols=42 Identities=21% Similarity=0.370 Sum_probs=30.7
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHhcC---CeEEEEecchhhhh
Q 016911 240 SPWKGILLFGPPGTGKTMLAKAVATECK---TTFFNISASSVVSK 281 (380)
Q Consensus 240 ~~~~~vLL~GppGtGKT~la~ala~~l~---~~~v~v~~s~l~~~ 281 (380)
..+..+++.|+.|||||++.+++...+. ..+..+..+.+...
T Consensus 20 ~~~~~~fv~G~~GtGKs~l~~~i~~~~~~~~~~~~~~a~tg~AA~ 64 (364)
T PF05970_consen 20 EEGLNFFVTGPAGTGKSFLIKAIIDYLRSRGKKVLVTAPTGIAAF 64 (364)
T ss_pred cCCcEEEEEcCCCCChhHHHHHHHHHhccccceEEEecchHHHHH
Confidence 3457899999999999999999988773 34554554444443
No 468
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=96.63 E-value=0.0052 Score=59.58 Aligned_cols=71 Identities=25% Similarity=0.253 Sum_probs=38.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhc---CCeEEEEecchhhhh---h-ccchHHHHHHHHH----HHHhcCCeEEEEcCcch
Q 016911 244 GILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSK---W-RGDSEKLIKVLFE----LARHHAPSTIFLDEIDA 312 (380)
Q Consensus 244 ~vLL~GppGtGKT~la~ala~~l---~~~~v~v~~s~l~~~---~-~ge~e~~l~~lf~----~A~~~~p~ILfIDEiD~ 312 (380)
-++|+|.||+|||++|+.|+..+ +..+..++...+... | -...++..+..+. .+... ..||++|+...
T Consensus 3 Liil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~~~~~~~~~y~~~~~Ek~~R~~l~s~v~r~ls~-~~iVI~Dd~nY 81 (270)
T PF08433_consen 3 LIILCGLPCSGKTTRAKELKKYLEEKGKEVVIISDDSLGIDRNDYADSKKEKEARGSLKSAVERALSK-DTIVILDDNNY 81 (270)
T ss_dssp EEEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-THHHH-TTSSS--GGGHHHHHHHHHHHHHHHHTT--SEEEE-S---
T ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEcccccccchhhhhchhhhHHHHHHHHHHHHHhhcc-CeEEEEeCCch
Confidence 47899999999999999999876 566666765444311 2 1233555544333 33333 36999998876
Q ss_pred hhh
Q 016911 313 IIS 315 (380)
Q Consensus 313 l~~ 315 (380)
+-+
T Consensus 82 iKg 84 (270)
T PF08433_consen 82 IKG 84 (270)
T ss_dssp SHH
T ss_pred HHH
Confidence 643
No 469
>PRK01184 hypothetical protein; Provisional
Probab=96.63 E-value=0.0019 Score=58.17 Aligned_cols=29 Identities=31% Similarity=0.424 Sum_probs=24.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcCCeEEEE
Q 016911 244 GILLFGPPGTGKTMLAKAVATECKTTFFNI 273 (380)
Q Consensus 244 ~vLL~GppGtGKT~la~ala~~l~~~~v~v 273 (380)
-++|+|+||+||||+++ ++.+++.+++..
T Consensus 3 ~i~l~G~~GsGKsT~a~-~~~~~g~~~i~~ 31 (184)
T PRK01184 3 IIGVVGMPGSGKGEFSK-IAREMGIPVVVM 31 (184)
T ss_pred EEEEECCCCCCHHHHHH-HHHHcCCcEEEh
Confidence 57899999999999998 788888777554
No 470
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=96.63 E-value=0.033 Score=52.65 Aligned_cols=28 Identities=21% Similarity=0.371 Sum_probs=24.8
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHhc
Q 016911 239 LSPWKGILLFGPPGTGKTMLAKAVATEC 266 (380)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~la~ala~~l 266 (380)
++++..+.+.||+|||||||...++...
T Consensus 28 i~~Ge~vaI~GpSGSGKSTLLniig~ld 55 (226)
T COG1136 28 IEAGEFVAIVGPSGSGKSTLLNLLGGLD 55 (226)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 5777889999999999999999998654
No 471
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=96.62 E-value=0.0027 Score=57.98 Aligned_cols=23 Identities=39% Similarity=0.624 Sum_probs=16.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhc
Q 016911 244 GILLFGPPGTGKTMLAKAVATEC 266 (380)
Q Consensus 244 ~vLL~GppGtGKT~la~ala~~l 266 (380)
-.+++||||||||+++..++..+
T Consensus 19 ~~~i~GpPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 19 ITLIQGPPGTGKTTTLASIIAQL 41 (236)
T ss_dssp -EEEE-STTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCChHHHHHHHHHHh
Confidence 48999999999997665555443
No 472
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=96.62 E-value=0.011 Score=64.93 Aligned_cols=71 Identities=23% Similarity=0.275 Sum_probs=42.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhc---C--CeEEEEecchhhhh----hccchHHHHHHHHHHHH----------hcCCe
Q 016911 243 KGILLFGPPGTGKTMLAKAVATEC---K--TTFFNISASSVVSK----WRGDSEKLIKVLFELAR----------HHAPS 303 (380)
Q Consensus 243 ~~vLL~GppGtGKT~la~ala~~l---~--~~~v~v~~s~l~~~----~~ge~e~~l~~lf~~A~----------~~~p~ 303 (380)
+.+++.|+|||||||+++++...+ + .+++.+.++.-... ..|.....++.++.... ....+
T Consensus 339 ~~~iitGgpGTGKTt~l~~i~~~~~~~~~~~~v~l~ApTg~AA~~L~e~~g~~a~Tih~lL~~~~~~~~~~~~~~~~~~~ 418 (720)
T TIGR01448 339 KVVILTGGPGTGKTTITRAIIELAEELGGLLPVGLAAPTGRAAKRLGEVTGLTASTIHRLLGYGPDTFRHNHLEDPIDCD 418 (720)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCceEEEEeCchHHHHHHHHhcCCccccHHHHhhccCCccchhhhhccccCC
Confidence 578999999999999999997755 3 44444444322221 12222233333333211 12357
Q ss_pred EEEEcCcchh
Q 016911 304 TIFLDEIDAI 313 (380)
Q Consensus 304 ILfIDEiD~l 313 (380)
+|++||+..+
T Consensus 419 llIvDEaSMv 428 (720)
T TIGR01448 419 LLIVDESSMM 428 (720)
T ss_pred EEEEeccccC
Confidence 9999999765
No 473
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=96.62 E-value=0.002 Score=56.70 Aligned_cols=30 Identities=37% Similarity=0.581 Sum_probs=26.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcCCeEEEE
Q 016911 244 GILLFGPPGTGKTMLAKAVATECKTTFFNI 273 (380)
Q Consensus 244 ~vLL~GppGtGKT~la~ala~~l~~~~v~v 273 (380)
.+.+.|++|+|||++|+.+++.++.+++..
T Consensus 2 iI~i~G~~GSGKstia~~la~~lg~~~~~~ 31 (171)
T TIGR02173 2 IITISGPPGSGKTTVAKILAEKLSLKLISA 31 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCceecH
Confidence 378999999999999999999999887654
No 474
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=96.60 E-value=0.014 Score=54.59 Aligned_cols=22 Identities=32% Similarity=0.475 Sum_probs=20.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHH
Q 016911 243 KGILLFGPPGTGKTMLAKAVAT 264 (380)
Q Consensus 243 ~~vLL~GppGtGKT~la~ala~ 264 (380)
..++|+||+|+|||++.+.++.
T Consensus 31 ~~~~l~Gpn~sGKstllr~i~~ 52 (216)
T cd03284 31 QILLITGPNMAGKSTYLRQVAL 52 (216)
T ss_pred eEEEEECCCCCChHHHHHHHHH
Confidence 6789999999999999999964
No 475
>PRK10436 hypothetical protein; Provisional
Probab=96.60 E-value=0.0065 Score=63.25 Aligned_cols=93 Identities=16% Similarity=0.227 Sum_probs=56.0
Q ss_pred CccccccchHHHHHHHHHHHhccccCcccccccCCCCceEEEEcCCCCcHHHHHHHHHHhcC---CeEEEEec-chhhhh
Q 016911 206 VKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECK---TTFFNISA-SSVVSK 281 (380)
Q Consensus 206 ~~~~~l~Gl~~~k~~L~~~l~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~l~---~~~v~v~~-s~l~~~ 281 (380)
.+++++.-.....+.+.+.+. .+...+|+.||+|+||||++.++...++ .+++.+.- .+..-.
T Consensus 195 ~~L~~LG~~~~~~~~l~~~~~-------------~~~GliLvtGpTGSGKTTtL~a~l~~~~~~~~~i~TiEDPvE~~l~ 261 (462)
T PRK10436 195 LDLETLGMTPAQLAQFRQALQ-------------QPQGLILVTGPTGSGKTVTLYSALQTLNTAQINICSVEDPVEIPLA 261 (462)
T ss_pred CCHHHcCcCHHHHHHHHHHHH-------------hcCCeEEEECCCCCChHHHHHHHHHhhCCCCCEEEEecCCccccCC
Confidence 356666555555555655442 3446789999999999999988777663 23333321 111100
Q ss_pred -----hcc-chHHHHHHHHHHHHhcCCeEEEEcCcc
Q 016911 282 -----WRG-DSEKLIKVLFELARHHAPSTIFLDEID 311 (380)
Q Consensus 282 -----~~g-e~e~~l~~lf~~A~~~~p~ILfIDEiD 311 (380)
.++ ..........+.+....|++|++.|+-
T Consensus 262 gi~Q~~v~~~~g~~f~~~lr~~LR~dPDvI~vGEIR 297 (462)
T PRK10436 262 GINQTQIHPKAGLTFQRVLRALLRQDPDVIMVGEIR 297 (462)
T ss_pred CcceEeeCCccCcCHHHHHHHHhcCCCCEEEECCCC
Confidence 011 111223455666777889999999995
No 476
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=96.60 E-value=0.0094 Score=59.72 Aligned_cols=42 Identities=21% Similarity=0.316 Sum_probs=31.1
Q ss_pred cccCCCCceEEEEcCCCCcHHHHHHHHHHhc---------CCeEEEEecch
Q 016911 236 TGLLSPWKGILLFGPPGTGKTMLAKAVATEC---------KTTFFNISASS 277 (380)
Q Consensus 236 ~~~~~~~~~vLL~GppGtGKT~la~ala~~l---------~~~~v~v~~s~ 277 (380)
.+++.++.-+.++|+||+|||+++..+|... +...++++...
T Consensus 117 ~GG~~~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~ 167 (342)
T PLN03186 117 EGGIETGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEG 167 (342)
T ss_pred cCCCcCceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCC
Confidence 3456777889999999999999998877322 23566776654
No 477
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.58 E-value=0.03 Score=52.59 Aligned_cols=26 Identities=15% Similarity=0.286 Sum_probs=21.8
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHh
Q 016911 240 SPWKGILLFGPPGTGKTMLAKAVATE 265 (380)
Q Consensus 240 ~~~~~vLL~GppGtGKT~la~ala~~ 265 (380)
.+...++|+||.|+|||++++.++..
T Consensus 28 ~~~~~~~l~G~n~~GKstll~~i~~~ 53 (222)
T cd03285 28 GKSRFLIITGPNMGGKSTYIRQIGVI 53 (222)
T ss_pred cCCeEEEEECCCCCChHHHHHHHHHH
Confidence 35567899999999999999998753
No 478
>PF00488 MutS_V: MutS domain V C-terminus.; InterPro: IPR000432 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the C-terminal domain found in proteins in the MutS family of DNA mismatch repair proteins. The C-terminal region of MutS is comprised of the ATPase domain and the HTH (helix-turn-helix) domain, the latter being involved in dimer contacts. Yeast MSH3 [], bacterial proteins involved in DNA mismatch repair, and the predicted protein product of the Rep-3 gene of mouse share extensive sequence similarity. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein. ; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 1FW6_A 1EWQ_A 1EWR_B 1NNE_B 2WTU_A 1OH7_A 1OH5_B 1W7A_B 1NG9_A 1OH8_B ....
Probab=96.58 E-value=0.019 Score=54.43 Aligned_cols=24 Identities=25% Similarity=0.432 Sum_probs=21.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhc
Q 016911 243 KGILLFGPPGTGKTMLAKAVATEC 266 (380)
Q Consensus 243 ~~vLL~GppGtGKT~la~ala~~l 266 (380)
+.++|+||..+|||+++|.++-..
T Consensus 44 ~~~iiTGpN~sGKSt~lk~i~~~~ 67 (235)
T PF00488_consen 44 RIIIITGPNMSGKSTFLKQIGLIV 67 (235)
T ss_dssp SEEEEESSTTSSHHHHHHHHHHHH
T ss_pred eEEEEeCCCccchhhHHHHHHHHh
Confidence 678999999999999999997643
No 479
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=96.58 E-value=0.014 Score=53.49 Aligned_cols=27 Identities=33% Similarity=0.524 Sum_probs=25.3
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHh
Q 016911 239 LSPWKGILLFGPPGTGKTMLAKAVATE 265 (380)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~la~ala~~ 265 (380)
+.++..+.|.|++|+|||||++.++..
T Consensus 23 i~~Ge~~~i~G~nGsGKStLl~~l~G~ 49 (200)
T cd03217 23 IKKGEVHALMGPNGSGKSTLAKTIMGH 49 (200)
T ss_pred ECCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 578889999999999999999999997
No 480
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=96.56 E-value=0.014 Score=56.10 Aligned_cols=118 Identities=19% Similarity=0.244 Sum_probs=62.3
Q ss_pred cccCCCCceEEEEcCCCCcHHHHHHHHHHhc---------CCeEEEEecchhh---------hhhcc-------------
Q 016911 236 TGLLSPWKGILLFGPPGTGKTMLAKAVATEC---------KTTFFNISASSVV---------SKWRG------------- 284 (380)
Q Consensus 236 ~~~~~~~~~vLL~GppGtGKT~la~ala~~l---------~~~~v~v~~s~l~---------~~~~g------------- 284 (380)
.+++..+.-+=|+||||+|||.++..+|-.. +...++++...-+ ..+..
T Consensus 32 ~GGi~~g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~~i~~~~~~~~~~~l~~I~v~~ 111 (256)
T PF08423_consen 32 GGGIPTGSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQQIAERFGLDPEEILDNIFVIR 111 (256)
T ss_dssp TSSEETTSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHHHHHHHTTS-HHHHHHTEEEEE
T ss_pred CCCCCCCcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHHHHhhccccccchhhhceeeee
Confidence 3445666667799999999999998887432 4457777764311 11100
Q ss_pred --chH---HHHHHHHHHHHhcCCeEEEEcCcchhhhhccccchhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEe
Q 016911 285 --DSE---KLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAAT 354 (380)
Q Consensus 285 --e~e---~~l~~lf~~A~~~~p~ILfIDEiD~l~~~~~~~~~~~~~~~~i~~~Ll~~ldgl~~~~~~VlVIatT 354 (380)
..+ ..+..+........-.+|+||-+-.++........+...-...+..+...+..+.... ++.||.|-
T Consensus 112 ~~~~~~l~~~L~~l~~~l~~~~ikLIVIDSIaalfr~e~~~~~~~~~R~~~L~~~~~~L~~lA~~~-~iaVvvTN 185 (256)
T PF08423_consen 112 VFDLEELLELLEQLPKLLSESKIKLIVIDSIAALFRSEFSGRGDLAERQRMLARLARILKRLARKY-NIAVVVTN 185 (256)
T ss_dssp -SSHHHHHHHHHHHHHHHHHSCEEEEEEETSSHHHHHHSGSTTTHHHHHHHHHHHHHHHHHHHHHT-T-EEEEEE
T ss_pred cCCHHHHHHHHHHHHhhccccceEEEEecchHHHHHHHHccchhhHHHHHHHHHHHHHHHHHHHhC-CceEEeec
Confidence 011 1112222222234467999999999876432211111112344455555554444333 35555444
No 481
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=96.56 E-value=0.0032 Score=48.05 Aligned_cols=22 Identities=36% Similarity=0.590 Sum_probs=20.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHhc
Q 016911 245 ILLFGPPGTGKTMLAKAVATEC 266 (380)
Q Consensus 245 vLL~GppGtGKT~la~ala~~l 266 (380)
+.+.|+||+|||+++++++..+
T Consensus 2 i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5789999999999999999986
No 482
>PF13479 AAA_24: AAA domain
Probab=96.54 E-value=0.0058 Score=56.86 Aligned_cols=68 Identities=26% Similarity=0.320 Sum_probs=38.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhcCCeEE-EEecchh-hhhh-----c-cchHHHHHHHHHHH--HhcCCeEEEEcCcc
Q 016911 242 WKGILLFGPPGTGKTMLAKAVATECKTTFF-NISASSV-VSKW-----R-GDSEKLIKVLFELA--RHHAPSTIFLDEID 311 (380)
Q Consensus 242 ~~~vLL~GppGtGKT~la~ala~~l~~~~v-~v~~s~l-~~~~-----~-ge~e~~l~~lf~~A--~~~~p~ILfIDEiD 311 (380)
+..++|||+||+|||++|..+ +.+++ .+..+.. ...+ + -.+-..+...+... ......+|+||.++
T Consensus 3 ~~~~lIyG~~G~GKTt~a~~~----~k~l~id~E~g~~~~~~~~~~~~i~i~s~~~~~~~~~~l~~~~~~y~tiVIDsis 78 (213)
T PF13479_consen 3 PIKILIYGPPGSGKTTLAASL----PKPLFIDTENGSDSLKFLDDGDVIPITSWEDFLEALDELEEDEADYDTIVIDSIS 78 (213)
T ss_pred ceEEEEECCCCCCHHHHHHhC----CCeEEEEeCCCccchhhhcCCCeeCcCCHHHHHHHHHHHHhccCCCCEEEEECHH
Confidence 467999999999999999988 33332 2332211 1111 0 01222233333222 23456799999887
Q ss_pred hh
Q 016911 312 AI 313 (380)
Q Consensus 312 ~l 313 (380)
.+
T Consensus 79 ~~ 80 (213)
T PF13479_consen 79 WL 80 (213)
T ss_pred HH
Confidence 65
No 483
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=96.54 E-value=0.0032 Score=56.16 Aligned_cols=39 Identities=26% Similarity=0.313 Sum_probs=32.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhc---CCeEEEEecchhhh
Q 016911 242 WKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVS 280 (380)
Q Consensus 242 ~~~vLL~GppGtGKT~la~ala~~l---~~~~v~v~~s~l~~ 280 (380)
+..+.|+|.||+||||||+++...+ +.+.+.++...+..
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LDgD~lR~ 43 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALERRLFARGIKVYLLDGDNLRH 43 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEHHHHCT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEecCcchhh
Confidence 3568899999999999999999888 77888898876653
No 484
>PRK14526 adenylate kinase; Provisional
Probab=96.54 E-value=0.0024 Score=59.58 Aligned_cols=28 Identities=32% Similarity=0.673 Sum_probs=24.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcCCeEE
Q 016911 244 GILLFGPPGTGKTMLAKAVATECKTTFF 271 (380)
Q Consensus 244 ~vLL~GppGtGKT~la~ala~~l~~~~v 271 (380)
.++|+||||+||||+++.+|..++.+.+
T Consensus 2 ~i~l~G~pGsGKsT~a~~La~~~~~~~i 29 (211)
T PRK14526 2 KLVFLGPPGSGKGTIAKILSNELNYYHI 29 (211)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcee
Confidence 4789999999999999999999886554
No 485
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=96.53 E-value=0.0022 Score=56.59 Aligned_cols=27 Identities=37% Similarity=0.519 Sum_probs=21.2
Q ss_pred EEEEcCCCCcHHHHHHHHHHhcCCeEEE
Q 016911 245 ILLFGPPGTGKTMLAKAVATECKTTFFN 272 (380)
Q Consensus 245 vLL~GppGtGKT~la~ala~~l~~~~v~ 272 (380)
|.|+|+||||||||++.|+.. +.+++.
T Consensus 2 I~i~G~~stGKTTL~~~L~~~-g~~~v~ 28 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR-GYPVVP 28 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH-T-EEE-
T ss_pred EEEECCCCCCHHHHHHHHHHc-CCeEEe
Confidence 789999999999999999998 877763
No 486
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=96.53 E-value=0.012 Score=64.85 Aligned_cols=72 Identities=18% Similarity=0.184 Sum_probs=43.6
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhc---CCeEEEEecchhhhhhc----cchHHHHHHHHH-HHH----hcCCeEEEEcC
Q 016911 242 WKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKWR----GDSEKLIKVLFE-LAR----HHAPSTIFLDE 309 (380)
Q Consensus 242 ~~~vLL~GppGtGKT~la~ala~~l---~~~~v~v~~s~l~~~~~----ge~e~~l~~lf~-~A~----~~~p~ILfIDE 309 (380)
.+.++|.|+||||||++++++...+ +..+..+.++....... |.....+..+.. ... ....++|++||
T Consensus 368 ~~~~il~G~aGTGKTtll~~i~~~~~~~g~~V~~~ApTg~Aa~~L~~~~g~~a~Ti~~~~~~~~~~~~~~~~~~llIvDE 447 (744)
T TIGR02768 368 GDIAVVVGRAGTGKSTMLKAAREAWEAAGYRVIGAALSGKAAEGLQAESGIESRTLASLEYAWANGRDLLSDKDVLVIDE 447 (744)
T ss_pred CCEEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEeCcHHHHHHHHhccCCceeeHHHHHhhhccCcccCCCCcEEEEEC
Confidence 3578899999999999999997654 66666665544332221 211122222211 111 12357999999
Q ss_pred cchh
Q 016911 310 IDAI 313 (380)
Q Consensus 310 iD~l 313 (380)
+..+
T Consensus 448 asMv 451 (744)
T TIGR02768 448 AGMV 451 (744)
T ss_pred cccC
Confidence 9766
No 487
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=96.53 E-value=0.11 Score=53.72 Aligned_cols=74 Identities=18% Similarity=0.144 Sum_probs=46.4
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHhc---CCeEEEEecchhh----------hh-----hc-----cchHHHHHHHHHH
Q 016911 240 SPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVV----------SK-----WR-----GDSEKLIKVLFEL 296 (380)
Q Consensus 240 ~~~~~vLL~GppGtGKT~la~ala~~l---~~~~v~v~~s~l~----------~~-----~~-----ge~e~~l~~lf~~ 296 (380)
.++..++|+|++|+||||++..+|..+ +..+..+++.... .. +. ..........+..
T Consensus 98 ~~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~ 177 (429)
T TIGR01425 98 GKQNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEK 177 (429)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHH
Confidence 345778999999999999999999776 5566666653221 00 01 0112233334455
Q ss_pred HHhcCCeEEEEcCcchh
Q 016911 297 ARHHAPSTIFLDEIDAI 313 (380)
Q Consensus 297 A~~~~p~ILfIDEiD~l 313 (380)
++....++|+||=....
T Consensus 178 ~~~~~~DvViIDTaGr~ 194 (429)
T TIGR01425 178 FKKENFDIIIVDTSGRH 194 (429)
T ss_pred HHhCCCCEEEEECCCCC
Confidence 55445689999987654
No 488
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.52 E-value=0.019 Score=62.96 Aligned_cols=27 Identities=33% Similarity=0.568 Sum_probs=23.2
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHhc
Q 016911 240 SPWKGILLFGPPGTGKTMLAKAVATEC 266 (380)
Q Consensus 240 ~~~~~vLL~GppGtGKT~la~ala~~l 266 (380)
.++..++|.||.|+||||++..||..+
T Consensus 183 ~~g~Vi~lVGpnGvGKTTTiaKLA~~~ 209 (767)
T PRK14723 183 AQGGVLALVGPTGVGKTTTTAKLAARC 209 (767)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHhhH
Confidence 345678999999999999999999765
No 489
>PRK10867 signal recognition particle protein; Provisional
Probab=96.50 E-value=0.018 Score=59.42 Aligned_cols=74 Identities=22% Similarity=0.300 Sum_probs=47.5
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHhc----CCeEEEEecchhhhh----------------hc----cchHHHHHHHHH
Q 016911 240 SPWKGILLFGPPGTGKTMLAKAVATEC----KTTFFNISASSVVSK----------------WR----GDSEKLIKVLFE 295 (380)
Q Consensus 240 ~~~~~vLL~GppGtGKT~la~ala~~l----~~~~v~v~~s~l~~~----------------~~----ge~e~~l~~lf~ 295 (380)
.++..+++.|++|+||||++..+|..+ +..+..+++...... +. ............
T Consensus 98 ~~p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~aa~eQL~~~a~~~gv~v~~~~~~~dp~~i~~~a~~ 177 (433)
T PRK10867 98 KPPTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRPAAIEQLKTLGEQIGVPVFPSGDGQDPVDIAKAALE 177 (433)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccchHHHHHHHHHHhhcCCeEEecCCCCCHHHHHHHHHH
Confidence 346788999999999999888887655 455666666422110 00 122334444555
Q ss_pred HHHhcCCeEEEEcCcchh
Q 016911 296 LARHHAPSTIFLDEIDAI 313 (380)
Q Consensus 296 ~A~~~~p~ILfIDEiD~l 313 (380)
.+.....++|++|=...+
T Consensus 178 ~a~~~~~DvVIIDTaGrl 195 (433)
T PRK10867 178 EAKENGYDVVIVDTAGRL 195 (433)
T ss_pred HHHhcCCCEEEEeCCCCc
Confidence 666666789999987654
No 490
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.50 E-value=0.018 Score=54.10 Aligned_cols=26 Identities=27% Similarity=0.381 Sum_probs=22.3
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHh
Q 016911 240 SPWKGILLFGPPGTGKTMLAKAVATE 265 (380)
Q Consensus 240 ~~~~~vLL~GppGtGKT~la~ala~~ 265 (380)
.++..++|+||.|.|||++.+.++..
T Consensus 28 ~~~~~~~itG~n~~gKs~~l~~i~~~ 53 (218)
T cd03286 28 TSPRILVLTGPNMGGKSTLLRTVCLA 53 (218)
T ss_pred cCCcEEEEECCCCCchHHHHHHHHHH
Confidence 45578899999999999999998764
No 491
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=96.49 E-value=0.043 Score=49.72 Aligned_cols=23 Identities=26% Similarity=0.407 Sum_probs=20.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhc
Q 016911 244 GILLFGPPGTGKTMLAKAVATEC 266 (380)
Q Consensus 244 ~vLL~GppGtGKT~la~ala~~l 266 (380)
-.+++||.|+|||++..|++-.+
T Consensus 24 ~~~i~G~NGsGKSnil~Ai~~~~ 46 (178)
T cd03239 24 FNAIVGPNGSGKSNIVDAICFVL 46 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHc
Confidence 67899999999999999997665
No 492
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=96.48 E-value=0.021 Score=60.90 Aligned_cols=28 Identities=25% Similarity=0.494 Sum_probs=25.9
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHhc
Q 016911 239 LSPWKGILLFGPPGTGKTMLAKAVATEC 266 (380)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~la~ala~~l 266 (380)
++++..+.+.|++|+|||||++.+++..
T Consensus 358 i~~G~~v~IvG~sGsGKSTLl~lL~gl~ 385 (588)
T PRK13657 358 AKPGQTVAIVGPTGAGKSTLINLLQRVF 385 (588)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 6788899999999999999999999876
No 493
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=96.48 E-value=0.023 Score=60.39 Aligned_cols=28 Identities=25% Similarity=0.419 Sum_probs=25.9
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHhc
Q 016911 239 LSPWKGILLFGPPGTGKTMLAKAVATEC 266 (380)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~la~ala~~l 266 (380)
++++..+.|.|++|+|||||++.+++.+
T Consensus 366 i~~G~~~aIvG~sGsGKSTLl~ll~gl~ 393 (582)
T PRK11176 366 IPAGKTVALVGRSGSGKSTIANLLTRFY 393 (582)
T ss_pred eCCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 5778889999999999999999999877
No 494
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=96.48 E-value=0.0087 Score=63.83 Aligned_cols=72 Identities=18% Similarity=0.203 Sum_probs=44.5
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHhcCC---eEEEEecc-hhh-----hhhcc-chHHHHHHHHHHHHhcCCeEEEEcCc
Q 016911 241 PWKGILLFGPPGTGKTMLAKAVATECKT---TFFNISAS-SVV-----SKWRG-DSEKLIKVLFELARHHAPSTIFLDEI 310 (380)
Q Consensus 241 ~~~~vLL~GppGtGKT~la~ala~~l~~---~~v~v~~s-~l~-----~~~~g-e~e~~l~~lf~~A~~~~p~ILfIDEi 310 (380)
+...+|++||+|+||||++.++.+.++. +++.+.-. +.. ...+. ..........+.+....|+||++.|+
T Consensus 315 ~~Glilv~G~tGSGKTTtl~a~l~~~~~~~~~i~tiEdpvE~~~~~~~q~~v~~~~g~~~~~~l~~~LR~dPDvI~vGEi 394 (564)
T TIGR02538 315 PQGMVLVTGPTGSGKTVSLYTALNILNTEEVNISTAEDPVEINLPGINQVNVNPKIGLTFAAALRSFLRQDPDIIMVGEI 394 (564)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHhhCCCCceEEEecCCceecCCCceEEEeccccCCCHHHHHHHHhccCCCEEEeCCC
Confidence 4456889999999999999888877742 33322211 111 00001 11122345566677788999999999
Q ss_pred ch
Q 016911 311 DA 312 (380)
Q Consensus 311 D~ 312 (380)
..
T Consensus 395 Rd 396 (564)
T TIGR02538 395 RD 396 (564)
T ss_pred CC
Confidence 53
No 495
>PF08303 tRNA_lig_kinase: tRNA ligase kinase domain; InterPro: IPR015966 This entry represents a kinase domain found in fungal tRNA ligases []. Please see the following relevant references: [, ].; GO: 0003972 RNA ligase (ATP) activity, 0005524 ATP binding, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation
Probab=96.46 E-value=0.037 Score=49.80 Aligned_cols=61 Identities=21% Similarity=0.327 Sum_probs=38.7
Q ss_pred EcCCCCcHHHHHHHHHHhcCCeEEEEecchhhhhhccchHHHHHHHHHHHHhcCCeEEEEcCcch
Q 016911 248 FGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDA 312 (380)
Q Consensus 248 ~GppGtGKT~la~ala~~l~~~~v~v~~s~l~~~~~ge~e~~l~~lf~~A~~~~p~ILfIDEiD~ 312 (380)
.+.+||||||++.+|++.++- +-.+.-.++.++ ...+.++.+.+........++|.|==..
T Consensus 5 IAtiGCGKTTva~aL~~LFg~-wgHvQnDnI~~k---~~~~f~~~~l~~L~~~~~~vViaDRNNh 65 (168)
T PF08303_consen 5 IATIGCGKTTVALALSNLFGE-WGHVQNDNITGK---RKPKFIKAVLELLAKDTHPVVIADRNNH 65 (168)
T ss_pred ecCCCcCHHHHHHHHHHHcCC-CCccccCCCCCC---CHHHHHHHHHHHHhhCCCCEEEEeCCCc
Confidence 578999999999999999973 222343444332 2445555555555333456888884433
No 496
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=96.45 E-value=0.0035 Score=54.52 Aligned_cols=30 Identities=27% Similarity=0.252 Sum_probs=26.6
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHhcCCe
Q 016911 240 SPWKGILLFGPPGTGKTMLAKAVATECKTT 269 (380)
Q Consensus 240 ~~~~~vLL~GppGtGKT~la~ala~~l~~~ 269 (380)
+++..++|.|+.|+||||+++.+++.++..
T Consensus 20 ~~~~~i~l~G~lGaGKTtl~~~l~~~lg~~ 49 (133)
T TIGR00150 20 DFGTVVLLKGDLGAGKTTLVQGLLQGLGIQ 49 (133)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHcCCC
Confidence 566789999999999999999999999753
No 497
>PF05272 VirE: Virulence-associated protein E; InterPro: IPR007936 This family contains several bacterial virulence-associated protein E like proteins.
Probab=96.44 E-value=0.002 Score=59.70 Aligned_cols=26 Identities=23% Similarity=0.386 Sum_probs=22.3
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHh
Q 016911 240 SPWKGILLFGPPGTGKTMLAKAVATE 265 (380)
Q Consensus 240 ~~~~~vLL~GppGtGKT~la~ala~~ 265 (380)
+....++|.|+.|+|||+..+.|+.+
T Consensus 50 k~d~~lvl~G~QG~GKStf~~~L~~~ 75 (198)
T PF05272_consen 50 KNDTVLVLVGKQGIGKSTFFRKLGPE 75 (198)
T ss_pred cCceeeeEecCCcccHHHHHHHHhHH
Confidence 44567899999999999999999655
No 498
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=96.44 E-value=0.021 Score=60.04 Aligned_cols=28 Identities=29% Similarity=0.542 Sum_probs=26.0
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHhc
Q 016911 239 LSPWKGILLFGPPGTGKTMLAKAVATEC 266 (380)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~la~ala~~l 266 (380)
++++..+.+.||+|+|||||++.+++..
T Consensus 358 i~~G~~vaIvG~SGsGKSTLl~lL~g~~ 385 (529)
T TIGR02868 358 LPPGERVAILGPSGSGKSTLLMLLTGLL 385 (529)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 6788999999999999999999999876
No 499
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=96.43 E-value=0.023 Score=61.91 Aligned_cols=28 Identities=25% Similarity=0.417 Sum_probs=25.5
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHhc
Q 016911 239 LSPWKGILLFGPPGTGKTMLAKAVATEC 266 (380)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~la~ala~~l 266 (380)
++++..+.+.|++|+|||||++.+++.+
T Consensus 488 i~~G~~iaIvG~sGsGKSTLlklL~gl~ 515 (694)
T TIGR03375 488 IRPGEKVAIIGRIGSGKSTLLKLLLGLY 515 (694)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 5678889999999999999999999876
No 500
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=96.41 E-value=0.003 Score=56.57 Aligned_cols=25 Identities=28% Similarity=0.466 Sum_probs=22.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhcC
Q 016911 243 KGILLFGPPGTGKTMLAKAVATECK 267 (380)
Q Consensus 243 ~~vLL~GppGtGKT~la~ala~~l~ 267 (380)
..++|.||||+||||++++++..++
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~~ 26 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARLA 26 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 3578999999999999999999774
Done!