Query 016911
Match_columns 380
No_of_seqs 354 out of 2273
Neff 6.6
Searched_HMMs 29240
Date Mon Mar 25 05:50:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016911.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016911hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4b4t_J 26S protease regulatory 100.0 1.9E-34 6.4E-39 289.5 17.1 185 194-379 133-321 (405)
2 4b4t_M 26S protease regulatory 100.0 7.1E-33 2.4E-37 281.1 14.1 182 197-379 169-354 (434)
3 4b4t_I 26S protease regulatory 100.0 5E-33 1.7E-37 280.5 12.1 180 199-379 172-355 (437)
4 4b4t_L 26S protease subunit RP 100.0 8E-33 2.7E-37 280.9 12.9 184 195-379 167-354 (437)
5 4b4t_H 26S protease regulatory 100.0 2.9E-32 9.9E-37 277.2 16.6 179 200-379 200-382 (467)
6 4b4t_K 26S protease regulatory 100.0 3.8E-32 1.3E-36 275.4 15.3 179 200-379 163-346 (428)
7 3cf2_A TER ATPase, transitiona 100.0 1.5E-30 5.2E-35 280.8 14.2 183 197-380 465-651 (806)
8 1xwi_A SKD1 protein; VPS4B, AA 100.0 5.2E-28 1.8E-32 236.3 19.0 178 200-379 3-181 (322)
9 3cf2_A TER ATPase, transitiona 100.0 7.2E-29 2.5E-33 267.8 11.6 174 203-379 198-374 (806)
10 3eie_A Vacuolar protein sortin 100.0 7.8E-28 2.7E-32 234.3 16.0 180 198-379 7-186 (322)
11 2qp9_X Vacuolar protein sortin 99.9 3.9E-27 1.3E-31 233.0 15.4 181 197-379 39-219 (355)
12 2zan_A Vacuolar protein sortin 99.9 2.1E-26 7.3E-31 234.3 13.5 182 196-379 121-303 (444)
13 3cf0_A Transitional endoplasmi 99.9 1.7E-26 5.9E-31 222.9 11.3 182 197-379 3-188 (301)
14 3b9p_A CG5977-PA, isoform A; A 99.9 7.1E-25 2.4E-29 209.4 15.3 183 195-379 7-191 (297)
15 3d8b_A Fidgetin-like protein 1 99.9 1.4E-24 4.8E-29 214.6 16.6 183 195-379 70-253 (357)
16 3vfd_A Spastin; ATPase, microt 99.9 1.6E-24 5.5E-29 216.1 15.6 184 194-379 100-284 (389)
17 2x8a_A Nuclear valosin-contain 99.9 1.2E-24 4E-29 208.2 12.9 175 202-379 3-180 (274)
18 3h4m_A Proteasome-activating n 99.9 8.9E-24 3E-28 200.4 16.1 177 202-379 10-190 (285)
19 2qz4_A Paraplegin; AAA+, SPG7, 99.9 1.6E-23 5.3E-28 195.6 14.0 174 204-379 1-179 (262)
20 1lv7_A FTSH; alpha/beta domain 99.9 2.9E-23 1E-27 194.6 15.6 176 202-379 5-184 (257)
21 2ce7_A Cell division protein F 99.9 2.9E-23 9.8E-28 213.1 14.2 175 203-379 10-188 (476)
22 3hu3_A Transitional endoplasmi 99.9 2.1E-23 7.1E-28 214.9 12.8 173 204-379 199-374 (489)
23 1ypw_A Transitional endoplasmi 99.9 1.2E-23 3.9E-28 228.6 1.5 182 198-380 466-651 (806)
24 2r62_A Cell division protease 99.9 6.4E-24 2.2E-28 199.9 -2.8 178 202-380 4-186 (268)
25 2dhr_A FTSH; AAA+ protein, hex 99.9 1.2E-21 4.1E-26 202.2 12.3 175 203-379 25-203 (499)
26 1ixz_A ATP-dependent metallopr 99.9 5.2E-21 1.8E-25 178.9 14.6 178 200-379 7-188 (254)
27 3t15_A Ribulose bisphosphate c 99.8 8.7E-22 3E-26 189.7 8.6 138 239-378 33-186 (293)
28 1iy2_A ATP-dependent metallopr 99.8 5.1E-20 1.8E-24 175.0 17.7 176 202-379 33-212 (278)
29 1ypw_A Transitional endoplasmi 99.8 1.7E-20 5.9E-25 203.7 12.3 174 203-379 198-374 (806)
30 2c9o_A RUVB-like 1; hexameric 99.8 7.8E-20 2.7E-24 186.3 3.8 168 204-379 32-226 (456)
31 3syl_A Protein CBBX; photosynt 99.7 9.5E-18 3.2E-22 160.4 9.3 159 210-379 32-206 (309)
32 1g41_A Heat shock protein HSLU 99.7 5.5E-18 1.9E-22 172.2 5.0 159 209-379 15-180 (444)
33 1ofh_A ATP-dependent HSL prote 99.7 6.3E-17 2.1E-21 153.9 11.3 169 209-378 15-203 (310)
34 3hws_A ATP-dependent CLP prote 99.7 8.8E-17 3E-21 158.4 12.5 131 210-340 16-156 (363)
35 1d2n_A N-ethylmaleimide-sensit 99.7 4.3E-17 1.5E-21 153.9 9.3 135 240-377 62-198 (272)
36 2p65_A Hypothetical protein PF 99.7 6.3E-17 2.1E-21 141.5 9.3 152 205-378 18-187 (187)
37 1jbk_A CLPB protein; beta barr 99.7 2.4E-16 8.2E-21 137.7 10.2 152 205-379 18-187 (195)
38 3m6a_A ATP-dependent protease 99.6 1.2E-16 4.2E-21 166.3 8.1 155 208-379 80-255 (543)
39 3pfi_A Holliday junction ATP-d 99.6 1.9E-15 6.5E-20 146.5 15.4 149 203-379 23-186 (338)
40 1um8_A ATP-dependent CLP prote 99.6 3.3E-15 1.1E-19 147.6 11.1 160 209-369 21-223 (376)
41 3uk6_A RUVB-like 2; hexameric 99.6 1.2E-14 4E-19 142.2 12.8 151 204-378 39-260 (368)
42 3u61_B DNA polymerase accessor 99.6 1.7E-14 5.8E-19 139.1 12.1 141 203-378 20-166 (324)
43 1hqc_A RUVB; extended AAA-ATPa 99.5 1.5E-14 5.3E-19 138.7 10.8 149 204-379 7-170 (324)
44 3pxg_A Negative regulator of g 99.5 8.8E-15 3E-19 149.6 8.8 147 195-379 166-327 (468)
45 4fcw_A Chaperone protein CLPB; 99.5 3.1E-14 1.1E-18 135.8 12.0 154 209-378 17-217 (311)
46 3n70_A Transport activator; si 99.5 1.9E-14 6.5E-19 123.9 9.1 133 210-379 2-144 (145)
47 3co5_A Putative two-component 99.5 1.1E-14 3.7E-19 125.3 6.5 133 210-379 5-142 (143)
48 3pxi_A Negative regulator of g 99.5 6.6E-14 2.3E-18 150.7 14.1 150 209-378 491-663 (758)
49 2chg_A Replication factor C sm 99.5 3.2E-13 1.1E-17 120.4 15.4 140 204-378 12-162 (226)
50 1r6b_X CLPA protein; AAA+, N-t 99.5 8.1E-14 2.8E-18 149.8 12.7 152 209-378 458-654 (758)
51 3pxi_A Negative regulator of g 99.5 3.3E-14 1.1E-18 153.1 9.1 147 195-379 166-327 (758)
52 1qvr_A CLPB protein; coiled co 99.5 2.4E-14 8.1E-19 156.3 7.9 154 203-379 164-334 (854)
53 1r6b_X CLPA protein; AAA+, N-t 99.5 3.6E-14 1.2E-18 152.6 9.2 155 203-379 180-351 (758)
54 3pvs_A Replication-associated 99.5 2.2E-13 7.4E-18 138.8 13.1 137 204-378 21-166 (447)
55 1l8q_A Chromosomal replication 99.5 6.9E-13 2.4E-17 128.1 15.0 150 204-376 6-166 (324)
56 2v1u_A Cell division control p 99.5 5.2E-13 1.8E-17 130.0 14.0 156 206-378 16-202 (387)
57 1g8p_A Magnesium-chelatase 38 99.4 2.9E-13 9.9E-18 131.0 11.4 148 203-378 18-219 (350)
58 2qby_B CDC6 homolog 3, cell di 99.4 7.7E-13 2.6E-17 129.4 14.0 145 209-378 20-198 (384)
59 2bjv_A PSP operon transcriptio 99.4 6.2E-13 2.1E-17 124.7 12.2 147 206-379 3-179 (265)
60 3te6_A Regulatory protein SIR3 99.4 5.8E-13 2E-17 130.0 11.4 145 211-378 22-199 (318)
61 2chq_A Replication factor C sm 99.4 4.3E-13 1.5E-17 127.6 9.0 145 203-378 11-162 (319)
62 2r44_A Uncharacterized protein 99.4 2.2E-13 7.4E-18 131.9 6.9 141 207-379 25-187 (331)
63 1sxj_D Activator 1 41 kDa subu 99.4 1.1E-12 3.9E-17 126.8 11.0 140 204-378 32-193 (353)
64 1ojl_A Transcriptional regulat 99.4 6.9E-13 2.4E-17 128.2 9.2 144 209-379 2-175 (304)
65 1iqp_A RFCS; clamp loader, ext 99.4 2.6E-12 8.8E-17 122.6 13.0 145 203-378 19-170 (327)
66 2z4s_A Chromosomal replication 99.4 2.9E-12 1E-16 130.0 14.1 153 204-379 100-265 (440)
67 2qby_A CDC6 homolog 1, cell di 99.4 7E-12 2.4E-16 121.8 16.2 156 204-378 15-198 (386)
68 1sxj_A Activator 1 95 kDa subu 99.4 7.1E-13 2.4E-17 136.9 9.5 162 203-379 33-211 (516)
69 1sxj_B Activator 1 37 kDa subu 99.4 2.7E-12 9.1E-17 122.3 12.4 140 204-378 16-167 (323)
70 1njg_A DNA polymerase III subu 99.4 1.7E-12 5.8E-17 116.7 10.3 141 204-378 18-186 (250)
71 3bos_A Putative DNA replicatio 99.4 3.2E-12 1.1E-16 116.1 12.1 142 204-379 23-176 (242)
72 1qvr_A CLPB protein; coiled co 99.3 3.4E-12 1.1E-16 139.3 12.2 153 208-378 557-758 (854)
73 3nbx_X ATPase RAVA; AAA+ ATPas 99.3 1.7E-12 5.9E-17 133.9 9.1 143 209-379 22-184 (500)
74 1sxj_E Activator 1 40 kDa subu 99.3 6.3E-12 2.1E-16 122.1 11.3 145 202-378 7-194 (354)
75 1jr3_A DNA polymerase III subu 99.3 7.1E-12 2.4E-16 122.1 11.7 142 203-378 10-179 (373)
76 1fnn_A CDC6P, cell division co 99.3 3.4E-11 1.2E-15 117.6 14.9 151 207-378 15-194 (389)
77 1sxj_C Activator 1 40 kDa subu 99.2 2.8E-11 9.7E-16 117.7 10.8 141 203-378 19-170 (340)
78 1in4_A RUVB, holliday junction 99.2 1.9E-10 6.6E-15 112.0 14.1 147 204-378 20-181 (334)
79 3cmw_A Protein RECA, recombina 99.2 2.9E-11 9.9E-16 139.0 9.4 152 204-357 1015-1218(1706)
80 2gno_A DNA polymerase III, gam 99.2 1.7E-10 5.9E-15 111.7 13.5 131 213-379 1-141 (305)
81 3f9v_A Minichromosome maintena 99.2 3.6E-12 1.2E-16 134.1 0.6 151 209-377 295-478 (595)
82 1a5t_A Delta prime, HOLB; zinc 99.2 4.5E-10 1.5E-14 109.5 15.3 134 214-378 7-168 (334)
83 3ec2_A DNA replication protein 99.1 9.4E-11 3.2E-15 103.4 8.7 98 205-313 6-112 (180)
84 2kjq_A DNAA-related protein; s 99.0 4.4E-10 1.5E-14 97.5 7.9 108 241-377 35-148 (149)
85 3k1j_A LON protease, ATP-depen 99.0 3.6E-10 1.2E-14 118.8 6.9 52 202-267 34-85 (604)
86 1w5s_A Origin recognition comp 99.0 4.7E-09 1.6E-13 103.2 13.0 159 207-378 20-216 (412)
87 4akg_A Glutathione S-transfera 99.0 3.5E-09 1.2E-13 126.5 14.1 129 240-380 1265-1421(2695)
88 2w58_A DNAI, primosome compone 98.9 1.7E-09 5.8E-14 96.8 6.7 70 243-314 55-128 (202)
89 2r2a_A Uncharacterized protein 98.8 5.9E-09 2E-13 95.0 6.8 127 243-379 6-155 (199)
90 1ny5_A Transcriptional regulat 98.7 5.3E-09 1.8E-13 104.2 4.1 143 209-379 137-310 (387)
91 2qgz_A Helicase loader, putati 98.7 1.4E-08 4.9E-13 98.1 6.5 71 242-314 152-227 (308)
92 2vhj_A Ntpase P4, P4; non- hyd 98.7 2E-08 6.7E-13 98.1 6.0 77 239-317 120-198 (331)
93 3dzd_A Transcriptional regulat 98.6 1.4E-07 4.9E-12 93.3 9.3 143 209-379 129-301 (368)
94 1tue_A Replication protein E1; 98.5 1.1E-07 3.6E-12 87.3 7.0 109 242-377 58-179 (212)
95 3f8t_A Predicted ATPase involv 98.5 1.7E-07 6E-12 95.6 6.8 136 211-371 215-374 (506)
96 2fna_A Conserved hypothetical 98.4 1.1E-06 3.7E-11 84.0 11.4 58 204-277 8-65 (357)
97 2qen_A Walker-type ATPase; unk 98.4 3.1E-06 1.1E-10 80.7 14.4 58 204-277 7-64 (350)
98 3cmu_A Protein RECA, recombina 98.3 1.1E-06 3.7E-11 102.6 10.3 118 238-357 1423-1563(2050)
99 4akg_A Glutathione S-transfera 98.3 2.1E-06 7.1E-11 103.0 12.5 124 242-379 645-782 (2695)
100 1ye8_A Protein THEP1, hypothet 98.1 1.4E-05 4.8E-10 70.9 11.1 27 244-270 2-28 (178)
101 2w0m_A SSO2452; RECA, SSPF, un 98.0 2.9E-05 9.9E-10 69.6 11.1 37 238-274 19-58 (235)
102 3vkg_A Dynein heavy chain, cyt 98.0 6.8E-06 2.3E-10 99.5 8.8 127 241-379 1303-1458(3245)
103 2cvh_A DNA repair and recombin 98.0 4.2E-05 1.4E-09 68.3 11.8 41 237-277 15-55 (220)
104 1n0w_A DNA repair protein RAD5 98.0 2.7E-05 9.1E-10 70.7 9.5 79 237-315 19-133 (243)
105 1u0j_A DNA replication protein 97.9 3.5E-06 1.2E-10 80.1 3.3 27 242-268 104-130 (267)
106 1svm_A Large T antigen; AAA+ f 97.9 4E-06 1.4E-10 83.4 3.7 101 239-360 166-267 (377)
107 2ehv_A Hypothetical protein PH 97.9 0.00013 4.6E-09 66.2 13.0 27 237-263 25-51 (251)
108 4a74_A DNA repair and recombin 97.8 5E-05 1.7E-09 68.2 9.1 30 237-266 20-49 (231)
109 3vkg_A Dynein heavy chain, cyt 97.8 7.9E-05 2.7E-09 90.4 11.9 126 243-379 605-742 (3245)
110 3hr8_A Protein RECA; alpha and 97.8 6.8E-05 2.3E-09 74.0 9.1 79 237-315 56-153 (356)
111 2z43_A DNA repair and recombin 97.7 9.1E-05 3.1E-09 71.6 9.2 80 237-316 102-218 (324)
112 1xp8_A RECA protein, recombina 97.7 0.00013 4.6E-09 72.1 10.3 78 238-315 70-166 (366)
113 1v5w_A DMC1, meiotic recombina 97.7 0.00018 6E-09 70.2 10.8 80 237-316 117-234 (343)
114 2zr9_A Protein RECA, recombina 97.7 7.3E-05 2.5E-09 73.4 7.9 78 238-315 57-153 (349)
115 2dr3_A UPF0273 protein PH0284; 97.7 0.00022 7.6E-09 64.6 10.6 40 236-275 17-59 (247)
116 1qhx_A CPT, protein (chloramph 97.7 4E-05 1.4E-09 66.4 5.3 35 243-277 4-38 (178)
117 1u94_A RECA protein, recombina 97.6 0.00011 3.7E-09 72.5 8.0 78 238-315 59-155 (356)
118 2orw_A Thymidine kinase; TMTK, 97.6 2.2E-05 7.6E-10 70.0 2.7 32 242-273 3-37 (184)
119 3trf_A Shikimate kinase, SK; a 97.5 4.3E-05 1.5E-09 66.8 3.7 33 242-274 5-37 (185)
120 1pzn_A RAD51, DNA repair and r 97.5 0.00026 9E-09 69.3 9.7 40 237-276 126-174 (349)
121 3cmu_A Protein RECA, recombina 97.5 0.00018 6.2E-09 84.3 9.6 79 238-316 1077-1174(2050)
122 2b8t_A Thymidine kinase; deoxy 97.5 0.00023 7.9E-09 65.7 8.3 73 240-313 10-101 (223)
123 3vaa_A Shikimate kinase, SK; s 97.5 5.1E-05 1.8E-09 67.6 3.8 35 240-274 23-57 (199)
124 3lda_A DNA repair protein RAD5 97.5 0.00023 7.9E-09 71.2 8.3 79 237-315 173-287 (400)
125 1zp6_A Hypothetical protein AT 97.4 0.00011 3.9E-09 64.3 4.8 39 240-278 7-45 (191)
126 2zts_A Putative uncharacterize 97.4 0.0014 4.9E-08 59.1 12.0 40 236-275 24-67 (251)
127 2i1q_A DNA repair and recombin 97.4 0.00045 1.5E-08 66.3 8.7 79 237-315 93-218 (322)
128 3kb2_A SPBC2 prophage-derived 97.4 0.00012 4E-09 62.7 4.1 31 244-274 3-33 (173)
129 1vma_A Cell division protein F 97.3 0.003 1E-07 60.8 14.1 73 240-312 102-197 (306)
130 3iij_A Coilin-interacting nucl 97.3 0.00013 4.3E-09 63.6 4.1 34 241-274 10-43 (180)
131 2rhm_A Putative kinase; P-loop 97.3 0.00011 3.9E-09 64.2 3.7 33 241-273 4-36 (193)
132 1via_A Shikimate kinase; struc 97.3 0.00011 3.6E-09 63.9 3.5 30 244-273 6-35 (175)
133 1kag_A SKI, shikimate kinase I 97.3 0.00018 6E-09 62.0 4.8 31 242-272 4-34 (173)
134 1g5t_A COB(I)alamin adenosyltr 97.3 0.0015 5.2E-08 59.1 11.1 115 243-373 29-176 (196)
135 3upu_A ATP-dependent DNA helic 97.3 0.0005 1.7E-08 69.4 8.7 60 204-276 19-83 (459)
136 2p5t_B PEZT; postsegregational 97.3 0.00044 1.5E-08 64.1 7.7 39 240-278 30-68 (253)
137 2iyv_A Shikimate kinase, SK; t 97.3 0.00012 3.9E-09 64.0 3.4 32 243-274 3-34 (184)
138 1y63_A LMAJ004144AAA protein; 97.3 0.00015 5.1E-09 63.8 4.1 34 241-274 9-43 (184)
139 1zuh_A Shikimate kinase; alpha 97.3 0.00013 4.3E-09 62.9 3.5 33 242-274 7-39 (168)
140 2c95_A Adenylate kinase 1; tra 97.3 0.00016 5.6E-09 63.3 3.8 33 241-273 8-40 (196)
141 1nlf_A Regulatory protein REPA 97.2 0.0026 8.9E-08 59.5 12.3 29 238-266 26-54 (279)
142 1aky_A Adenylate kinase; ATP:A 97.2 0.00018 6E-09 65.0 3.9 33 241-273 3-35 (220)
143 1tev_A UMP-CMP kinase; ploop, 97.2 0.00018 6.1E-09 62.7 3.7 32 242-273 3-34 (196)
144 3io5_A Recombination and repai 97.2 0.0007 2.4E-08 65.9 8.1 77 237-315 24-125 (333)
145 2cdn_A Adenylate kinase; phosp 97.2 0.0002 6.9E-09 63.5 3.9 33 241-273 19-51 (201)
146 1gvn_B Zeta; postsegregational 97.2 0.00049 1.7E-08 65.4 6.6 39 240-278 31-69 (287)
147 2iut_A DNA translocase FTSK; n 97.2 0.0045 1.6E-07 64.5 14.4 65 303-378 345-411 (574)
148 3dm5_A SRP54, signal recogniti 97.2 0.0016 5.4E-08 66.0 10.7 73 241-313 99-194 (443)
149 1e6c_A Shikimate kinase; phosp 97.2 0.00021 7E-09 61.5 3.5 31 243-273 3-33 (173)
150 1z6t_A APAF-1, apoptotic prote 97.2 0.0042 1.4E-07 64.0 14.0 48 207-264 122-169 (591)
151 3lw7_A Adenylate kinase relate 97.2 0.00023 7.7E-09 60.5 3.7 29 244-273 3-31 (179)
152 3cm0_A Adenylate kinase; ATP-b 97.2 0.00025 8.6E-09 61.8 4.1 32 242-273 4-35 (186)
153 4gp7_A Metallophosphoesterase; 97.2 0.0012 4E-08 57.5 8.3 22 240-261 7-28 (171)
154 1knq_A Gluconate kinase; ALFA/ 97.2 0.00029 1E-08 60.9 4.3 32 241-272 7-38 (175)
155 1kht_A Adenylate kinase; phosp 97.1 0.00021 7.2E-09 62.1 3.1 30 243-272 4-38 (192)
156 3t61_A Gluconokinase; PSI-biol 97.1 0.0003 1E-08 62.4 4.1 32 242-273 18-49 (202)
157 3a4m_A L-seryl-tRNA(SEC) kinas 97.1 0.0011 3.8E-08 61.7 8.1 37 242-278 4-43 (260)
158 2ze6_A Isopentenyl transferase 97.1 0.0003 1E-08 65.6 4.1 32 244-275 3-34 (253)
159 2eyu_A Twitching motility prot 97.1 0.00052 1.8E-08 64.5 5.8 72 240-311 23-108 (261)
160 3jvv_A Twitching mobility prot 97.1 0.00052 1.8E-08 67.6 5.9 71 241-311 122-206 (356)
161 1ly1_A Polynucleotide kinase; 97.1 0.00033 1.1E-08 60.3 4.0 29 243-271 3-32 (181)
162 3cmw_A Protein RECA, recombina 97.1 0.00072 2.5E-08 78.4 7.9 78 238-315 728-824 (1706)
163 2bwj_A Adenylate kinase 5; pho 97.1 0.00027 9.4E-09 62.0 3.6 32 242-273 12-43 (199)
164 2vli_A Antibiotic resistance p 97.1 0.00026 8.8E-09 61.4 3.3 30 242-271 5-34 (183)
165 1zd8_A GTP:AMP phosphotransfer 97.1 0.0003 1E-08 63.9 3.8 32 242-273 7-38 (227)
166 4eun_A Thermoresistant glucoki 97.1 0.00043 1.5E-08 61.6 4.8 33 240-272 27-59 (200)
167 3dl0_A Adenylate kinase; phosp 97.1 0.0003 1E-08 63.1 3.7 30 244-273 2-31 (216)
168 1qf9_A UMP/CMP kinase, protein 97.1 0.00034 1.2E-08 60.8 3.8 31 243-273 7-37 (194)
169 1ukz_A Uridylate kinase; trans 97.1 0.00038 1.3E-08 61.7 4.2 33 242-274 15-47 (203)
170 3tlx_A Adenylate kinase 2; str 97.1 0.00034 1.2E-08 64.7 4.0 34 240-273 27-60 (243)
171 2pt5_A Shikimate kinase, SK; a 97.1 0.00031 1.1E-08 60.1 3.5 30 244-273 2-31 (168)
172 1ak2_A Adenylate kinase isoenz 97.0 0.00037 1.3E-08 63.6 4.1 33 241-273 15-47 (233)
173 3fb4_A Adenylate kinase; psych 97.0 0.00033 1.1E-08 62.7 3.5 30 244-273 2-31 (216)
174 2r8r_A Sensor protein; KDPD, P 97.0 0.0013 4.4E-08 60.9 7.3 33 243-275 7-42 (228)
175 1jr3_D DNA polymerase III, del 97.0 0.0035 1.2E-07 60.3 10.8 115 242-378 18-143 (343)
176 2pez_A Bifunctional 3'-phospho 97.0 0.00059 2E-08 59.3 4.8 38 241-278 4-44 (179)
177 3be4_A Adenylate kinase; malar 97.0 0.00034 1.2E-08 63.2 3.2 31 243-273 6-36 (217)
178 3e1s_A Exodeoxyribonuclease V, 97.0 0.00046 1.6E-08 72.1 4.4 35 242-276 204-241 (574)
179 3uie_A Adenylyl-sulfate kinase 97.0 0.0007 2.4E-08 60.2 5.0 39 240-278 23-64 (200)
180 1zak_A Adenylate kinase; ATP:A 97.0 0.0003 1E-08 63.5 2.6 31 242-272 5-35 (222)
181 3umf_A Adenylate kinase; rossm 96.9 0.00064 2.2E-08 62.4 4.7 38 240-279 27-64 (217)
182 2v54_A DTMP kinase, thymidylat 96.9 0.00078 2.7E-08 59.4 4.9 34 241-274 3-37 (204)
183 2r6a_A DNAB helicase, replicat 96.9 0.0055 1.9E-07 61.8 11.6 39 237-275 198-240 (454)
184 3sr0_A Adenylate kinase; phosp 96.9 0.0007 2.4E-08 61.5 4.3 34 244-279 2-35 (206)
185 1cke_A CK, MSSA, protein (cyti 96.8 0.00092 3.1E-08 60.0 4.9 30 243-272 6-35 (227)
186 2pbr_A DTMP kinase, thymidylat 96.8 0.00087 3E-08 58.3 4.5 31 244-274 2-35 (195)
187 2ius_A DNA translocase FTSK; n 96.8 0.013 4.4E-07 60.3 13.9 66 302-378 297-365 (512)
188 1e4v_A Adenylate kinase; trans 96.8 0.00057 2E-08 61.4 3.3 30 244-273 2-31 (214)
189 3kl4_A SRP54, signal recogniti 96.8 0.0032 1.1E-07 63.5 9.1 73 241-313 96-191 (433)
190 2ewv_A Twitching motility prot 96.8 0.001 3.4E-08 65.7 5.2 73 239-311 133-219 (372)
191 2bbw_A Adenylate kinase 4, AK4 96.8 0.00078 2.7E-08 61.9 4.2 31 241-271 26-56 (246)
192 2jaq_A Deoxyguanosine kinase; 96.8 0.00085 2.9E-08 58.8 4.2 29 244-272 2-30 (205)
193 1nks_A Adenylate kinase; therm 96.7 0.00064 2.2E-08 59.0 2.9 35 244-278 3-40 (194)
194 2q6t_A DNAB replication FORK h 96.7 0.0086 3E-07 60.1 11.6 39 237-275 195-237 (444)
195 2if2_A Dephospho-COA kinase; a 96.7 0.0008 2.8E-08 59.6 3.6 30 244-274 3-32 (204)
196 2ga8_A Hypothetical 39.9 kDa p 96.7 0.00061 2.1E-08 67.2 2.9 30 243-272 25-54 (359)
197 3sfz_A APAF-1, apoptotic pepti 96.7 0.012 4.1E-07 65.1 13.5 50 206-265 121-170 (1249)
198 2pt7_A CAG-ALFA; ATPase, prote 96.7 0.00098 3.3E-08 64.7 4.1 73 240-312 169-251 (330)
199 2z0h_A DTMP kinase, thymidylat 96.7 0.0013 4.4E-08 57.5 4.5 31 244-274 2-35 (197)
200 3crm_A TRNA delta(2)-isopenten 96.7 0.0014 4.6E-08 63.8 5.0 33 243-275 6-38 (323)
201 2xb4_A Adenylate kinase; ATP-b 96.7 0.0012 4E-08 60.0 4.2 30 244-273 2-31 (223)
202 2qt1_A Nicotinamide riboside k 96.7 0.0011 3.7E-08 59.0 3.9 36 239-274 18-54 (207)
203 3nwj_A ATSK2; P loop, shikimat 96.7 0.00099 3.4E-08 62.3 3.8 33 242-274 48-80 (250)
204 2plr_A DTMP kinase, probable t 96.7 0.0011 3.6E-08 58.6 3.8 27 242-268 4-30 (213)
205 3bh0_A DNAB-like replicative h 96.7 0.0099 3.4E-07 57.0 10.8 38 238-275 64-104 (315)
206 2j41_A Guanylate kinase; GMP, 96.6 0.0012 4.2E-08 58.1 3.8 27 240-266 4-30 (207)
207 4e22_A Cytidylate kinase; P-lo 96.6 0.0018 6.1E-08 60.1 5.1 32 240-271 25-56 (252)
208 2wwf_A Thymidilate kinase, put 96.6 0.00058 2E-08 60.6 1.6 28 241-268 9-36 (212)
209 1uf9_A TT1252 protein; P-loop, 96.6 0.0012 4.2E-08 57.9 3.8 31 242-273 8-38 (203)
210 1jjv_A Dephospho-COA kinase; P 96.6 0.001 3.5E-08 59.0 3.2 28 244-272 4-31 (206)
211 3ake_A Cytidylate kinase; CMP 96.6 0.0014 4.9E-08 57.7 4.1 31 244-274 4-34 (208)
212 2yvu_A Probable adenylyl-sulfa 96.6 0.002 6.8E-08 56.3 5.0 39 240-278 11-52 (186)
213 2qor_A Guanylate kinase; phosp 96.6 0.0014 4.8E-08 58.4 4.0 28 240-267 10-37 (204)
214 1nn5_A Similar to deoxythymidy 96.6 0.00066 2.3E-08 60.2 1.7 27 241-267 8-34 (215)
215 3r20_A Cytidylate kinase; stru 96.5 0.0018 6E-08 60.1 4.6 31 242-272 9-39 (233)
216 2fz4_A DNA repair protein RAD2 96.5 0.0036 1.2E-07 57.5 6.5 37 243-279 109-146 (237)
217 3foz_A TRNA delta(2)-isopenten 96.5 0.0013 4.6E-08 63.6 3.5 37 242-278 10-46 (316)
218 1uj2_A Uridine-cytidine kinase 96.5 0.0027 9.2E-08 58.6 5.4 38 242-279 22-67 (252)
219 3a8t_A Adenylate isopentenyltr 96.5 0.0018 6.1E-08 63.4 4.3 35 242-276 40-74 (339)
220 2grj_A Dephospho-COA kinase; T 96.5 0.0015 5.3E-08 58.5 3.5 31 243-273 13-43 (192)
221 3tr0_A Guanylate kinase, GMP k 96.5 0.0019 6.5E-08 56.9 4.0 27 240-266 5-31 (205)
222 1vht_A Dephospho-COA kinase; s 96.5 0.002 6.7E-08 57.8 4.2 31 242-273 4-34 (218)
223 2px0_A Flagellar biosynthesis 96.4 0.011 3.6E-07 56.6 9.3 37 240-276 103-143 (296)
224 1m7g_A Adenylylsulfate kinase; 96.4 0.0021 7.3E-08 57.5 4.1 39 240-278 23-65 (211)
225 1kgd_A CASK, peripheral plasma 96.4 0.002 6.9E-08 56.3 3.9 26 242-267 5-30 (180)
226 3tau_A Guanylate kinase, GMP k 96.4 0.0019 6.6E-08 57.9 3.8 28 240-267 6-33 (208)
227 2bdt_A BH3686; alpha-beta prot 96.4 0.0026 9E-08 55.6 4.4 26 243-268 3-28 (189)
228 1q3t_A Cytidylate kinase; nucl 96.4 0.003 1E-07 57.6 4.9 33 240-272 14-46 (236)
229 3thx_B DNA mismatch repair pro 96.3 0.014 4.6E-07 64.2 10.7 26 239-264 670-695 (918)
230 2h92_A Cytidylate kinase; ross 96.3 0.0023 7.8E-08 57.2 3.8 31 243-273 4-34 (219)
231 1tf7_A KAIC; homohexamer, hexa 96.3 0.01 3.5E-07 60.9 9.2 37 239-275 36-76 (525)
232 3zvl_A Bifunctional polynucleo 96.3 0.0056 1.9E-07 61.1 6.8 32 241-272 257-288 (416)
233 3asz_A Uridine kinase; cytidin 96.3 0.0026 8.9E-08 56.5 3.9 32 240-271 4-37 (211)
234 3c8u_A Fructokinase; YP_612366 96.2 0.0024 8.3E-08 57.1 3.5 28 240-267 20-47 (208)
235 1lvg_A Guanylate kinase, GMP k 96.2 0.0023 7.7E-08 57.1 3.2 26 241-266 3-28 (198)
236 1tf7_A KAIC; homohexamer, hexa 96.2 0.016 5.5E-07 59.4 10.0 76 238-313 277-383 (525)
237 1ltq_A Polynucleotide kinase; 96.2 0.0021 7.2E-08 60.5 3.1 29 243-271 3-32 (301)
238 1xx6_A Thymidine kinase; NESG, 96.2 0.0069 2.3E-07 54.3 6.2 34 241-274 7-43 (191)
239 3b6e_A Interferon-induced heli 96.2 0.038 1.3E-06 48.4 11.0 23 243-265 49-71 (216)
240 3e70_C DPA, signal recognition 96.2 0.02 6.7E-07 55.6 9.7 27 240-266 127-153 (328)
241 1znw_A Guanylate kinase, GMP k 96.1 0.0033 1.1E-07 56.1 3.9 28 239-266 17-44 (207)
242 2gxq_A Heat resistant RNA depe 96.1 0.025 8.5E-07 49.5 9.6 18 242-259 38-55 (207)
243 1rz3_A Hypothetical protein rb 96.1 0.012 4.1E-07 52.2 7.4 37 240-276 20-59 (201)
244 3thx_A DNA mismatch repair pro 96.1 0.024 8.3E-07 62.4 11.2 26 239-264 659-684 (934)
245 2f6r_A COA synthase, bifunctio 96.1 0.0033 1.1E-07 59.4 3.6 31 242-273 75-105 (281)
246 3bgw_A DNAB-like replicative h 96.1 0.025 8.7E-07 57.0 10.3 39 237-275 192-233 (444)
247 2yhs_A FTSY, cell division pro 96.1 0.024 8.3E-07 58.1 10.2 28 239-266 290-317 (503)
248 3a00_A Guanylate kinase, GMP k 96.1 0.0035 1.2E-07 55.0 3.5 25 243-267 2-26 (186)
249 1zu4_A FTSY; GTPase, signal re 96.0 0.025 8.7E-07 54.5 9.8 37 239-275 102-141 (320)
250 1z6g_A Guanylate kinase; struc 96.0 0.0038 1.3E-07 56.5 3.7 28 239-266 20-47 (218)
251 1htw_A HI0065; nucleotide-bind 96.0 0.0046 1.6E-07 53.6 4.0 28 239-266 30-57 (158)
252 1qde_A EIF4A, translation init 96.0 0.051 1.7E-06 48.3 11.1 17 242-258 51-67 (224)
253 2a5y_B CED-4; apoptosis; HET: 96.0 0.029 1E-06 57.7 10.6 44 212-264 131-174 (549)
254 2axn_A 6-phosphofructo-2-kinas 96.0 0.016 5.5E-07 59.7 8.6 38 241-278 34-74 (520)
255 1w4r_A Thymidine kinase; type 96.0 0.022 7.7E-07 51.3 8.4 35 241-275 19-56 (195)
256 3exa_A TRNA delta(2)-isopenten 96.0 0.0057 2E-07 59.3 4.8 34 243-276 4-37 (322)
257 2qmh_A HPR kinase/phosphorylas 96.0 0.0048 1.6E-07 56.1 3.9 34 240-274 32-65 (205)
258 3llm_A ATP-dependent RNA helic 96.0 0.054 1.8E-06 49.1 11.2 22 242-263 76-97 (235)
259 3d3q_A TRNA delta(2)-isopenten 96.0 0.0044 1.5E-07 60.6 4.0 33 243-275 8-40 (340)
260 2oap_1 GSPE-2, type II secreti 95.9 0.0046 1.6E-07 63.7 4.3 72 240-311 258-343 (511)
261 1q57_A DNA primase/helicase; d 95.9 0.04 1.4E-06 56.0 11.3 39 237-275 237-279 (503)
262 1g41_A Heat shock protein HSLU 95.9 0.017 5.9E-07 58.4 8.3 90 285-378 236-337 (444)
263 2j9r_A Thymidine kinase; TK1, 95.9 0.02 6.7E-07 52.4 7.7 35 241-275 27-64 (214)
264 3b9q_A Chloroplast SRP recepto 95.8 0.011 3.8E-07 56.6 6.2 28 239-266 97-124 (302)
265 2j37_W Signal recognition part 95.8 0.032 1.1E-06 57.3 9.9 36 240-275 99-137 (504)
266 1ex7_A Guanylate kinase; subst 95.8 0.0067 2.3E-07 54.2 4.3 24 243-266 2-25 (186)
267 3fdi_A Uncharacterized protein 95.8 0.0057 2E-07 54.9 3.9 30 243-272 7-36 (201)
268 1s96_A Guanylate kinase, GMP k 95.8 0.0058 2E-07 55.7 3.9 29 239-267 13-41 (219)
269 1p9r_A General secretion pathw 95.8 0.012 4E-07 59.1 6.4 70 241-310 166-245 (418)
270 1t6n_A Probable ATP-dependent 95.8 0.09 3.1E-06 46.5 11.6 23 242-264 51-73 (220)
271 1wb9_A DNA mismatch repair pro 95.8 0.031 1.1E-06 60.5 10.0 26 240-265 605-630 (800)
272 3ney_A 55 kDa erythrocyte memb 95.7 0.0067 2.3E-07 54.7 3.8 27 241-267 18-44 (197)
273 2v9p_A Replication protein E1; 95.7 0.0065 2.2E-07 58.5 3.8 32 239-270 123-154 (305)
274 2jeo_A Uridine-cytidine kinase 95.7 0.007 2.4E-07 55.5 3.9 31 239-269 22-52 (245)
275 1ls1_A Signal recognition part 95.6 0.028 9.6E-07 53.4 8.2 72 241-312 97-191 (295)
276 1j8m_F SRP54, signal recogniti 95.6 0.051 1.8E-06 51.8 10.0 72 242-313 98-192 (297)
277 3eph_A TRNA isopentenyltransfe 95.6 0.007 2.4E-07 60.6 4.0 34 242-275 2-35 (409)
278 4eaq_A DTMP kinase, thymidylat 95.6 0.0081 2.8E-07 55.0 4.0 33 240-272 24-58 (229)
279 4b3f_X DNA-binding protein smu 95.6 0.033 1.1E-06 58.5 9.1 34 244-277 207-243 (646)
280 2og2_A Putative signal recogni 95.5 0.015 5.1E-07 57.2 6.0 28 239-266 154-181 (359)
281 3lnc_A Guanylate kinase, GMP k 95.5 0.0042 1.4E-07 56.3 1.8 28 239-266 24-52 (231)
282 1cr0_A DNA primase/helicase; R 95.5 0.008 2.7E-07 56.5 3.6 29 238-266 31-59 (296)
283 1x6v_B Bifunctional 3'-phospho 95.4 0.01 3.5E-07 62.5 4.6 37 241-277 51-90 (630)
284 1gtv_A TMK, thymidylate kinase 95.4 0.0046 1.6E-07 54.7 1.6 24 244-267 2-25 (214)
285 2xau_A PRE-mRNA-splicing facto 95.4 0.072 2.4E-06 57.4 11.0 25 241-265 108-132 (773)
286 3tif_A Uncharacterized ABC tra 95.3 0.0074 2.5E-07 55.6 2.8 28 239-266 28-55 (235)
287 2cbz_A Multidrug resistance-as 95.3 0.0077 2.6E-07 55.5 2.8 28 239-266 28-55 (237)
288 2v3c_C SRP54, signal recogniti 95.3 0.033 1.1E-06 56.0 7.7 36 241-276 98-136 (432)
289 1vec_A ATP-dependent RNA helic 95.3 0.074 2.5E-06 46.5 9.1 19 242-260 40-58 (206)
290 1vt4_I APAF-1 related killer D 95.2 0.049 1.7E-06 60.8 9.3 43 212-265 131-173 (1221)
291 2oxc_A Probable ATP-dependent 95.2 0.13 4.3E-06 46.2 10.7 18 242-259 61-78 (230)
292 3aez_A Pantothenate kinase; tr 95.2 0.012 4E-07 56.7 3.9 28 239-266 87-114 (312)
293 2ffh_A Protein (FFH); SRP54, s 95.2 0.1 3.4E-06 52.5 10.8 35 241-275 97-134 (425)
294 2qm8_A GTPase/ATPase; G protei 95.1 0.044 1.5E-06 53.1 7.8 27 240-266 53-79 (337)
295 2xxa_A Signal recognition part 95.1 0.049 1.7E-06 54.8 8.4 73 240-312 98-194 (433)
296 1bif_A 6-phosphofructo-2-kinas 95.1 0.054 1.8E-06 54.7 8.7 27 241-267 38-64 (469)
297 2pcj_A ABC transporter, lipopr 95.1 0.0073 2.5E-07 55.1 2.1 28 239-266 27-54 (224)
298 1a7j_A Phosphoribulokinase; tr 95.1 0.0095 3.3E-07 56.6 2.9 36 243-278 6-44 (290)
299 1mv5_A LMRA, multidrug resista 95.1 0.0093 3.2E-07 55.1 2.8 28 239-266 25-52 (243)
300 2i3b_A HCR-ntpase, human cance 95.1 0.012 4.2E-07 52.4 3.3 24 243-266 2-25 (189)
301 1b0u_A Histidine permease; ABC 95.1 0.0099 3.4E-07 55.6 2.8 28 239-266 29-56 (262)
302 2pl3_A Probable ATP-dependent 95.1 0.15 5.2E-06 45.6 10.7 20 241-260 61-80 (236)
303 3hdt_A Putative kinase; struct 95.0 0.014 4.9E-07 53.4 3.8 30 243-272 15-44 (223)
304 1ewq_A DNA mismatch repair pro 95.0 0.079 2.7E-06 57.1 10.0 25 242-266 576-600 (765)
305 1sq5_A Pantothenate kinase; P- 95.0 0.015 5E-07 55.5 3.9 28 240-267 78-105 (308)
306 3gmt_A Adenylate kinase; ssgci 95.0 0.017 5.8E-07 53.4 4.1 31 243-273 9-39 (230)
307 3k53_A Ferrous iron transport 95.0 0.037 1.3E-06 51.4 6.4 24 243-266 4-27 (271)
308 2o8b_B DNA mismatch repair pro 94.9 0.087 3E-06 58.5 10.3 22 242-263 789-810 (1022)
309 2ghi_A Transport protein; mult 94.9 0.011 3.9E-07 55.2 2.8 28 239-266 43-70 (260)
310 2ixe_A Antigen peptide transpo 94.9 0.011 3.9E-07 55.6 2.8 28 239-266 42-69 (271)
311 2pze_A Cystic fibrosis transme 94.9 0.0097 3.3E-07 54.5 2.3 28 239-266 31-58 (229)
312 3bor_A Human initiation factor 94.9 0.083 2.8E-06 47.7 8.5 18 242-259 67-84 (237)
313 1odf_A YGR205W, hypothetical 3 94.9 0.028 9.7E-07 53.4 5.6 28 240-267 29-56 (290)
314 1m8p_A Sulfate adenylyltransfe 94.9 0.017 5.7E-07 60.3 4.2 38 241-278 395-436 (573)
315 1g6h_A High-affinity branched- 94.9 0.01 3.4E-07 55.4 2.3 28 239-266 30-57 (257)
316 1c9k_A COBU, adenosylcobinamid 94.9 0.018 6.3E-07 51.2 3.9 32 245-277 2-33 (180)
317 2olj_A Amino acid ABC transpor 94.9 0.012 4.1E-07 55.3 2.8 28 239-266 47-74 (263)
318 1sgw_A Putative ABC transporte 94.9 0.0098 3.4E-07 54.1 2.1 28 239-266 32-59 (214)
319 2ff7_A Alpha-hemolysin translo 94.9 0.01 3.5E-07 55.0 2.3 28 239-266 32-59 (247)
320 2zu0_C Probable ATP-dependent 94.8 0.015 5E-07 54.6 3.4 27 239-265 43-69 (267)
321 1p5z_B DCK, deoxycytidine kina 94.8 0.011 3.7E-07 54.7 2.4 28 240-267 22-49 (263)
322 1ji0_A ABC transporter; ATP bi 94.8 0.011 3.6E-07 54.6 2.3 28 239-266 29-56 (240)
323 2onk_A Molybdate/tungstate ABC 94.8 0.014 5E-07 53.9 3.2 27 239-266 22-48 (240)
324 1vpl_A ABC transporter, ATP-bi 94.8 0.013 4.4E-07 54.8 2.8 28 239-266 38-65 (256)
325 3fvq_A Fe(3+) IONS import ATP- 94.8 0.014 4.7E-07 57.5 3.1 28 239-266 27-54 (359)
326 2d2e_A SUFC protein; ABC-ATPas 94.8 0.013 4.5E-07 54.3 2.9 27 239-265 26-52 (250)
327 1rj9_A FTSY, signal recognitio 94.8 0.017 6E-07 55.3 3.8 26 241-266 101-126 (304)
328 2yz2_A Putative ABC transporte 94.8 0.013 4.6E-07 54.8 2.8 28 239-266 30-57 (266)
329 3gfo_A Cobalt import ATP-bindi 94.7 0.011 3.8E-07 55.9 2.3 28 239-266 31-58 (275)
330 2qi9_C Vitamin B12 import ATP- 94.7 0.011 3.9E-07 54.9 2.3 28 239-266 23-50 (249)
331 4f4c_A Multidrug resistance pr 94.7 0.044 1.5E-06 62.5 7.5 28 239-266 441-468 (1321)
332 1lw7_A Transcriptional regulat 94.7 0.02 7E-07 55.7 4.1 31 239-269 165-197 (365)
333 3p32_A Probable GTPase RV1496/ 94.7 0.062 2.1E-06 52.2 7.6 26 241-266 78-103 (355)
334 4g1u_C Hemin import ATP-bindin 94.7 0.012 4E-07 55.4 2.1 28 239-266 34-61 (266)
335 2ged_A SR-beta, signal recogni 94.6 0.039 1.3E-06 47.5 5.4 27 240-266 46-72 (193)
336 2yyz_A Sugar ABC transporter, 94.6 0.017 5.8E-07 56.8 3.4 28 239-266 26-53 (359)
337 3tqf_A HPR(Ser) kinase; transf 94.6 0.019 6.4E-07 51.1 3.3 26 240-265 14-39 (181)
338 2it1_A 362AA long hypothetical 94.6 0.017 5.8E-07 56.8 3.3 28 239-266 26-53 (362)
339 3cr8_A Sulfate adenylyltranfer 94.6 0.014 4.6E-07 60.7 2.7 39 240-278 367-409 (552)
340 2ocp_A DGK, deoxyguanosine kin 94.6 0.027 9.3E-07 51.2 4.5 26 242-267 2-27 (241)
341 1v43_A Sugar-binding transport 94.6 0.018 6E-07 57.0 3.3 28 239-266 34-61 (372)
342 2ihy_A ABC transporter, ATP-bi 94.6 0.013 4.5E-07 55.4 2.3 28 239-266 44-71 (279)
343 3rlf_A Maltose/maltodextrin im 94.6 0.018 6.1E-07 57.2 3.3 28 239-266 26-53 (381)
344 2gza_A Type IV secretion syste 94.5 0.013 4.4E-07 57.4 2.2 72 240-311 173-262 (361)
345 3iuy_A Probable ATP-dependent 94.5 0.12 4.1E-06 46.1 8.6 20 241-260 56-75 (228)
346 1q0u_A Bstdead; DEAD protein, 94.5 0.15 5.1E-06 45.2 9.2 18 243-260 42-59 (219)
347 2nq2_C Hypothetical ABC transp 94.5 0.013 4.6E-07 54.5 2.2 28 239-266 28-55 (253)
348 1z47_A CYSA, putative ABC-tran 94.5 0.016 5.4E-07 57.0 2.8 28 239-266 38-65 (355)
349 3b85_A Phosphate starvation-in 94.5 0.014 4.8E-07 52.8 2.2 25 241-265 21-45 (208)
350 1xti_A Probable ATP-dependent 94.5 0.48 1.7E-05 45.1 13.3 22 242-263 45-66 (391)
351 3fe2_A Probable ATP-dependent 94.5 0.12 4.1E-06 46.7 8.5 19 242-260 66-84 (242)
352 3ice_A Transcription terminati 94.5 0.078 2.7E-06 52.9 7.7 27 240-266 172-198 (422)
353 3tqc_A Pantothenate kinase; bi 94.5 0.041 1.4E-06 53.2 5.5 27 241-267 91-117 (321)
354 3d31_A Sulfate/molybdate ABC t 94.4 0.015 5.2E-07 56.9 2.5 28 239-266 23-50 (348)
355 3kta_A Chromosome segregation 94.4 0.027 9.2E-07 48.6 3.8 24 244-267 28-51 (182)
356 1g29_1 MALK, maltose transport 94.4 0.018 6.1E-07 56.9 2.8 28 239-266 26-53 (372)
357 3dkp_A Probable ATP-dependent 94.3 0.22 7.7E-06 44.8 9.9 18 242-259 66-83 (245)
358 3gd7_A Fusion complex of cysti 94.3 0.021 7.2E-07 56.8 3.1 28 239-266 44-71 (390)
359 2bbs_A Cystic fibrosis transme 94.3 0.019 6.4E-07 54.7 2.6 28 239-266 61-88 (290)
360 3vkw_A Replicase large subunit 94.2 0.053 1.8E-06 54.8 5.9 26 240-265 159-184 (446)
361 3iby_A Ferrous iron transport 94.1 0.079 2.7E-06 49.1 6.6 23 243-265 2-24 (256)
362 1oxx_K GLCV, glucose, ABC tran 94.1 0.016 5.3E-07 56.9 1.8 28 239-266 28-55 (353)
363 1hv8_A Putative ATP-dependent 94.1 0.32 1.1E-05 45.7 10.9 23 242-264 44-66 (367)
364 3nh6_A ATP-binding cassette SU 94.0 0.018 6.1E-07 55.4 2.0 28 239-266 77-104 (306)
365 2pjz_A Hypothetical protein ST 94.0 0.023 8E-07 53.2 2.7 27 239-266 28-54 (263)
366 4edh_A DTMP kinase, thymidylat 94.0 0.033 1.1E-06 50.5 3.6 32 242-273 6-40 (213)
367 3sop_A Neuronal-specific septi 93.9 0.028 9.5E-07 52.8 3.0 23 244-266 4-26 (270)
368 3tmk_A Thymidylate kinase; pho 93.9 0.053 1.8E-06 49.4 4.8 30 241-270 4-33 (216)
369 3tbk_A RIG-I helicase domain; 93.9 0.41 1.4E-05 47.8 11.9 23 243-265 20-42 (555)
370 2f9l_A RAB11B, member RAS onco 93.9 0.033 1.1E-06 48.7 3.3 23 243-265 6-28 (199)
371 1g8f_A Sulfate adenylyltransfe 93.9 0.028 9.5E-07 57.9 3.1 28 241-268 394-421 (511)
372 3ber_A Probable ATP-dependent 93.8 0.21 7.1E-06 45.6 8.7 19 242-260 80-98 (249)
373 1xjc_A MOBB protein homolog; s 93.8 0.038 1.3E-06 48.6 3.5 24 243-266 5-28 (169)
374 2p67_A LAO/AO transport system 93.8 0.15 5.2E-06 49.2 8.1 27 240-266 54-80 (341)
375 1oix_A RAS-related protein RAB 93.8 0.032 1.1E-06 48.6 3.0 24 243-266 30-53 (191)
376 2npi_A Protein CLP1; CLP1-PCF1 93.7 0.035 1.2E-06 56.3 3.6 28 239-266 135-162 (460)
377 2c9o_A RUVB-like 1; hexameric 93.7 0.052 1.8E-06 54.5 4.8 60 302-378 296-367 (456)
378 3v9p_A DTMP kinase, thymidylat 93.7 0.034 1.2E-06 51.1 3.1 26 241-266 24-49 (227)
379 2dyk_A GTP-binding protein; GT 93.7 0.041 1.4E-06 45.5 3.4 23 243-265 2-24 (161)
380 2vp4_A Deoxynucleoside kinase; 93.7 0.041 1.4E-06 49.9 3.6 26 240-265 18-43 (230)
381 4i1u_A Dephospho-COA kinase; s 93.7 0.043 1.5E-06 49.9 3.7 31 243-274 10-40 (210)
382 1nrj_B SR-beta, signal recogni 93.6 0.047 1.6E-06 48.1 3.9 26 241-266 11-36 (218)
383 2lkc_A Translation initiation 93.5 0.055 1.9E-06 45.6 4.0 25 240-264 6-30 (178)
384 1np6_A Molybdopterin-guanine d 93.5 0.039 1.3E-06 48.5 3.1 24 243-266 7-30 (174)
385 2gks_A Bifunctional SAT/APS ki 93.5 0.16 5.5E-06 52.5 8.2 37 242-278 372-411 (546)
386 2f1r_A Molybdopterin-guanine d 93.5 0.023 7.8E-07 49.8 1.6 25 243-267 3-27 (171)
387 3oiy_A Reverse gyrase helicase 93.5 0.14 4.7E-06 49.9 7.4 21 242-262 36-56 (414)
388 3tui_C Methionine import ATP-b 93.5 0.038 1.3E-06 54.5 3.3 28 239-266 51-78 (366)
389 3i8s_A Ferrous iron transport 93.5 0.15 5.1E-06 47.6 7.3 23 243-265 4-26 (274)
390 3a1s_A Iron(II) transport prot 93.5 0.13 4.5E-06 47.6 6.9 23 243-265 6-28 (258)
391 1z2a_A RAS-related protein RAB 93.4 0.048 1.6E-06 45.3 3.4 23 243-265 6-28 (168)
392 1u8z_A RAS-related protein RAL 93.4 0.046 1.6E-06 45.2 3.3 24 242-265 4-27 (168)
393 4a1f_A DNAB helicase, replicat 93.4 0.079 2.7E-06 51.6 5.3 38 238-275 42-82 (338)
394 1kao_A RAP2A; GTP-binding prot 93.4 0.048 1.7E-06 45.0 3.3 23 243-265 4-26 (167)
395 2wsm_A Hydrogenase expression/ 93.3 0.063 2.2E-06 47.4 4.2 24 243-266 31-54 (221)
396 1sky_E F1-ATPase, F1-ATP synth 93.3 0.04 1.4E-06 56.1 3.2 25 242-266 151-175 (473)
397 1ko7_A HPR kinase/phosphatase; 93.3 0.096 3.3E-06 50.5 5.7 25 241-265 143-167 (314)
398 2gj8_A MNME, tRNA modification 93.3 0.046 1.6E-06 46.8 3.1 25 241-265 3-27 (172)
399 2wji_A Ferrous iron transport 93.3 0.043 1.5E-06 46.4 2.8 23 243-265 4-26 (165)
400 3lv8_A DTMP kinase, thymidylat 93.2 0.049 1.7E-06 50.3 3.4 26 241-266 26-51 (236)
401 2ce2_X GTPase HRAS; signaling 93.2 0.051 1.7E-06 44.8 3.2 24 243-266 4-27 (166)
402 1s2m_A Putative ATP-dependent 93.2 0.23 7.8E-06 47.8 8.3 21 242-262 58-78 (400)
403 1upt_A ARL1, ADP-ribosylation 93.2 0.064 2.2E-06 44.7 3.8 24 241-264 6-29 (171)
404 1pui_A ENGB, probable GTP-bind 93.2 0.022 7.6E-07 49.9 0.9 28 239-266 23-50 (210)
405 2gk6_A Regulator of nonsense t 93.2 0.078 2.7E-06 55.5 5.3 24 243-266 196-219 (624)
406 2zej_A Dardarin, leucine-rich 93.2 0.037 1.3E-06 47.7 2.3 22 243-264 3-24 (184)
407 3ld9_A DTMP kinase, thymidylat 93.2 0.058 2E-06 49.4 3.7 28 241-268 20-47 (223)
408 1ek0_A Protein (GTP-binding pr 93.1 0.046 1.6E-06 45.4 2.8 24 243-266 4-27 (170)
409 2nzj_A GTP-binding protein REM 93.1 0.05 1.7E-06 45.6 3.0 24 242-265 4-27 (175)
410 2xtp_A GTPase IMAP family memb 93.1 0.2 6.8E-06 45.7 7.3 25 241-265 21-45 (260)
411 1ky3_A GTP-binding protein YPT 93.1 0.056 1.9E-06 45.5 3.3 24 242-265 8-31 (182)
412 2wjg_A FEOB, ferrous iron tran 93.0 0.053 1.8E-06 46.3 3.1 23 243-265 8-30 (188)
413 1z0j_A RAB-22, RAS-related pro 93.0 0.062 2.1E-06 44.7 3.4 24 243-266 7-30 (170)
414 2dpy_A FLII, flagellum-specifi 92.9 0.081 2.8E-06 53.2 4.8 29 240-268 155-183 (438)
415 3lxw_A GTPase IMAP family memb 92.9 0.066 2.3E-06 49.2 3.8 25 241-265 20-44 (247)
416 2erx_A GTP-binding protein DI- 92.9 0.059 2E-06 44.8 3.2 22 243-264 4-25 (172)
417 1wms_A RAB-9, RAB9, RAS-relate 92.9 0.064 2.2E-06 45.1 3.4 23 243-265 8-30 (177)
418 3clv_A RAB5 protein, putative; 92.8 0.074 2.5E-06 45.4 3.8 24 242-265 7-30 (208)
419 1g16_A RAS-related protein SEC 92.8 0.062 2.1E-06 44.7 3.2 23 243-265 4-26 (170)
420 1z08_A RAS-related protein RAB 92.8 0.068 2.3E-06 44.6 3.4 23 243-265 7-29 (170)
421 4ag6_A VIRB4 ATPase, type IV s 92.8 0.093 3.2E-06 51.3 4.9 34 241-274 34-70 (392)
422 4tmk_A Protein (thymidylate ki 92.8 0.064 2.2E-06 48.6 3.4 25 242-266 3-27 (213)
423 1c1y_A RAS-related protein RAP 92.7 0.068 2.3E-06 44.3 3.3 23 243-265 4-26 (167)
424 1nij_A Hypothetical protein YJ 92.7 0.11 3.7E-06 49.7 5.2 24 243-266 5-28 (318)
425 2hxs_A RAB-26, RAS-related pro 92.7 0.072 2.5E-06 44.8 3.5 24 242-265 6-29 (178)
426 1yqt_A RNAse L inhibitor; ATP- 92.7 0.064 2.2E-06 55.4 3.7 28 239-266 44-71 (538)
427 1r2q_A RAS-related protein RAB 92.7 0.072 2.5E-06 44.2 3.4 22 243-264 7-28 (170)
428 2qtf_A Protein HFLX, GTP-bindi 92.7 0.24 8.3E-06 48.4 7.7 24 243-266 180-203 (364)
429 3bc1_A RAS-related protein RAB 92.7 0.071 2.4E-06 45.3 3.4 23 243-265 12-34 (195)
430 2fwr_A DNA repair protein RAD2 92.6 0.099 3.4E-06 52.0 4.9 37 243-279 109-146 (472)
431 2obl_A ESCN; ATPase, hydrolase 92.6 0.082 2.8E-06 51.5 4.2 30 240-269 69-98 (347)
432 3b1v_A Ferrous iron uptake tra 92.6 0.16 5.6E-06 47.5 6.1 23 243-265 4-26 (272)
433 1r8s_A ADP-ribosylation factor 92.5 0.078 2.7E-06 44.0 3.4 22 244-265 2-23 (164)
434 3ly5_A ATP-dependent RNA helic 92.5 0.63 2.1E-05 42.7 9.9 18 243-260 92-109 (262)
435 2a9k_A RAS-related protein RAL 92.5 0.076 2.6E-06 44.9 3.3 23 243-265 19-41 (187)
436 1f2t_A RAD50 ABC-ATPase; DNA d 92.4 0.084 2.9E-06 44.8 3.5 24 243-266 24-47 (149)
437 3q85_A GTP-binding protein REM 92.4 0.077 2.6E-06 44.3 3.3 21 244-264 4-24 (169)
438 3pey_A ATP-dependent RNA helic 92.4 0.8 2.7E-05 43.3 10.9 21 242-262 44-64 (395)
439 1z0f_A RAB14, member RAS oncog 92.4 0.083 2.8E-06 44.3 3.4 24 243-266 16-39 (179)
440 1w36_D RECD, exodeoxyribonucle 92.3 0.068 2.3E-06 55.9 3.4 24 243-266 165-188 (608)
441 3t1o_A Gliding protein MGLA; G 92.3 0.085 2.9E-06 45.0 3.5 24 243-266 15-38 (198)
442 1svi_A GTP-binding protein YSX 92.3 0.078 2.7E-06 45.5 3.3 24 242-265 23-46 (195)
443 2fn4_A P23, RAS-related protei 92.3 0.078 2.7E-06 44.6 3.1 23 243-265 10-32 (181)
444 2y8e_A RAB-protein 6, GH09086P 92.3 0.079 2.7E-06 44.4 3.2 23 243-265 15-37 (179)
445 3q72_A GTP-binding protein RAD 92.3 0.08 2.7E-06 44.0 3.2 22 243-264 3-24 (166)
446 2hf9_A Probable hydrogenase ni 92.3 0.16 5.4E-06 45.0 5.3 25 242-266 38-62 (226)
447 2qag_B Septin-6, protein NEDD5 92.2 0.071 2.4E-06 53.6 3.3 27 240-266 38-66 (427)
448 4dsu_A GTPase KRAS, isoform 2B 92.2 0.087 3E-06 44.7 3.4 24 243-266 5-28 (189)
449 1fuu_A Yeast initiation factor 92.2 0.6 2.1E-05 44.4 9.7 18 242-259 58-75 (394)
450 3b5x_A Lipid A export ATP-bind 92.2 0.071 2.4E-06 55.3 3.3 28 239-266 366-393 (582)
451 3con_A GTPase NRAS; structural 92.2 0.089 3E-06 45.1 3.4 24 243-266 22-45 (190)
452 4dcu_A GTP-binding protein ENG 92.2 0.45 1.5E-05 47.6 9.1 22 243-264 24-45 (456)
453 1wp9_A ATP-dependent RNA helic 92.1 0.61 2.1E-05 45.0 9.8 33 244-276 25-61 (494)
454 3kkq_A RAS-related protein M-R 92.1 0.092 3.2E-06 44.6 3.5 24 242-265 18-41 (183)
455 2oil_A CATX-8, RAS-related pro 92.1 0.092 3.1E-06 45.2 3.4 23 243-265 26-48 (193)
456 4a2p_A RIG-I, retinoic acid in 92.1 1.1 3.7E-05 44.8 11.9 23 243-265 23-45 (556)
457 2zj8_A DNA helicase, putative 92.1 0.37 1.3E-05 50.9 8.8 19 241-259 38-56 (720)
458 2v6i_A RNA helicase; membrane, 92.1 0.33 1.1E-05 48.3 7.9 18 242-259 2-19 (431)
459 2efe_B Small GTP-binding prote 92.1 0.094 3.2E-06 44.2 3.4 23 243-265 13-35 (181)
460 3tw8_B RAS-related protein RAB 92.0 0.085 2.9E-06 44.3 3.1 22 243-264 10-31 (181)
461 3eiq_A Eukaryotic initiation f 92.0 0.52 1.8E-05 45.3 9.1 19 242-260 77-95 (414)
462 3pqc_A Probable GTP-binding pr 92.0 0.092 3.1E-06 44.8 3.3 23 243-265 24-46 (195)
463 1m2o_B GTP-binding protein SAR 92.0 0.089 3E-06 45.6 3.2 23 242-264 23-45 (190)
464 1m7b_A RND3/RHOE small GTP-bin 92.0 0.085 2.9E-06 45.2 3.1 24 242-265 7-30 (184)
465 2bme_A RAB4A, RAS-related prot 92.0 0.09 3.1E-06 44.7 3.2 23 243-265 11-33 (186)
466 2rcn_A Probable GTPase ENGC; Y 92.0 0.081 2.8E-06 51.9 3.2 26 242-267 215-240 (358)
467 2g6b_A RAS-related protein RAB 91.9 0.099 3.4E-06 44.0 3.4 24 242-265 10-33 (180)
468 3bwd_D RAC-like GTP-binding pr 91.9 0.11 3.8E-06 43.8 3.7 24 242-265 8-31 (182)
469 1ksh_A ARF-like protein 2; sma 91.9 0.084 2.9E-06 45.0 2.9 25 241-265 17-41 (186)
470 2atv_A RERG, RAS-like estrogen 91.9 0.11 3.6E-06 45.0 3.7 25 241-265 27-51 (196)
471 3fho_A ATP-dependent RNA helic 91.9 1.6 5.4E-05 44.1 12.9 24 242-265 158-182 (508)
472 3b60_A Lipid A export ATP-bind 91.9 0.067 2.3E-06 55.5 2.7 28 239-266 366-393 (582)
473 1mh1_A RAC1; GTP-binding, GTPa 91.9 0.1 3.5E-06 44.1 3.4 23 243-265 6-28 (186)
474 2cxx_A Probable GTP-binding pr 91.9 0.079 2.7E-06 45.1 2.7 22 244-265 3-24 (190)
475 2wjy_A Regulator of nonsense t 91.8 0.14 4.9E-06 55.3 5.3 24 243-266 372-395 (800)
476 1vg8_A RAS-related protein RAB 91.8 0.098 3.3E-06 45.3 3.3 25 242-266 8-32 (207)
477 1knx_A Probable HPR(Ser) kinas 91.8 0.084 2.9E-06 50.9 3.0 25 240-264 145-169 (312)
478 1u0l_A Probable GTPase ENGC; p 91.8 0.08 2.7E-06 50.2 2.9 26 242-267 169-194 (301)
479 2www_A Methylmalonic aciduria 91.7 0.1 3.6E-06 50.6 3.7 26 241-266 73-98 (349)
480 2bov_A RAla, RAS-related prote 91.7 0.11 3.8E-06 44.9 3.5 24 242-265 14-37 (206)
481 1yrb_A ATP(GTP)binding protein 91.7 0.19 6.7E-06 45.5 5.3 34 241-274 13-48 (262)
482 2orv_A Thymidine kinase; TP4A 91.7 0.27 9.2E-06 45.5 6.2 34 241-274 18-54 (234)
483 3tkl_A RAS-related protein RAB 91.6 0.11 3.8E-06 44.5 3.4 24 243-266 17-40 (196)
484 1moz_A ARL1, ADP-ribosylation 91.6 0.075 2.6E-06 45.1 2.3 24 241-264 17-40 (183)
485 2gf0_A GTP-binding protein DI- 91.6 0.12 4E-06 44.4 3.6 23 242-264 8-30 (199)
486 2gf9_A RAS-related protein RAB 91.6 0.11 3.8E-06 44.5 3.4 24 243-266 23-46 (189)
487 2p5s_A RAS and EF-hand domain 91.5 0.12 4.1E-06 44.9 3.5 25 241-265 27-51 (199)
488 1zj6_A ADP-ribosylation factor 91.5 0.11 3.9E-06 44.4 3.3 24 241-264 15-38 (187)
489 2ykg_A Probable ATP-dependent 91.5 0.89 3E-05 47.3 10.8 23 242-264 28-50 (696)
490 1zd9_A ADP-ribosylation factor 91.5 0.1 3.4E-06 45.0 2.9 25 241-265 21-45 (188)
491 1z06_A RAS-related protein RAB 91.5 0.11 3.9E-06 44.5 3.3 23 243-265 21-43 (189)
492 1x3s_A RAS-related protein RAB 91.4 0.12 4.1E-06 44.1 3.4 23 243-265 16-38 (195)
493 3euj_A Chromosome partition pr 91.4 0.12 4E-06 52.9 3.7 27 239-266 27-53 (483)
494 1zbd_A Rabphilin-3A; G protein 91.4 0.11 3.8E-06 45.0 3.2 23 243-265 9-31 (203)
495 1tq4_A IIGP1, interferon-induc 91.3 0.15 5.2E-06 50.9 4.5 24 242-265 69-92 (413)
496 3fht_A ATP-dependent RNA helic 91.3 0.89 3E-05 43.5 9.8 18 242-259 64-81 (412)
497 2yv5_A YJEQ protein; hydrolase 91.3 0.12 4.1E-06 49.1 3.6 24 242-266 165-188 (302)
498 3t5g_A GTP-binding protein RHE 91.3 0.12 4E-06 43.8 3.2 22 243-264 7-28 (181)
499 3cph_A RAS-related protein SEC 91.3 0.13 4.5E-06 44.7 3.5 25 241-265 19-43 (213)
500 2fg5_A RAB-22B, RAS-related pr 91.3 0.12 3.9E-06 44.7 3.2 23 243-265 24-46 (192)
No 1
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.9e-34 Score=289.52 Aligned_cols=185 Identities=37% Similarity=0.643 Sum_probs=168.3
Q ss_pred hccchhhccCCCCccccccchHHHHHHHHHHHhccccCccccccc-CCCCceEEEEcCCCCcHHHHHHHHHHhcCCeEEE
Q 016911 194 SLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFN 272 (380)
Q Consensus 194 ~~~~~~~~~~p~~~~~~l~Gl~~~k~~L~~~l~~~l~~~~~~~~~-~~~~~~vLL~GppGtGKT~la~ala~~l~~~~v~ 272 (380)
.+........|+.+|++|+|+++++++|++.+..|+.+|+.|... +.|++|+|||||||||||++|+++|++++.+|+.
T Consensus 133 ~~~~~~~~~~p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~ 212 (405)
T 4b4t_J 133 LVSLMMVEKVPDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIR 212 (405)
T ss_dssp CTTSCEEECSCSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEE
T ss_pred hhhhccccCCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCceE
Confidence 445556667899999999999999999999999999999999875 8889999999999999999999999999999999
Q ss_pred EecchhhhhhccchHHHHHHHHHHHHhcCCeEEEEcCcchhhhhccccc-hhhHHHHHHHHHHHHHhcCCccCCCcEEEE
Q 016911 273 ISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEAR-SEHEASRRLKTELLIQMDGLTQSDELVFVL 351 (380)
Q Consensus 273 v~~s~l~~~~~ge~e~~l~~lf~~A~~~~p~ILfIDEiD~l~~~~~~~~-~~~~~~~~i~~~Ll~~ldgl~~~~~~VlVI 351 (380)
++++++.++|+|++++.++.+|..|+..+|+||||||+|.+++.+.... ..+...++++++|+.+||++... .+|+||
T Consensus 213 v~~s~l~sk~vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~-~~V~vI 291 (405)
T 4b4t_J 213 VSGAELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETS-KNIKII 291 (405)
T ss_dssp EEGGGGSCSSTTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCC-CCEEEE
T ss_pred EEhHHhhccccchHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCC-CCeEEE
Confidence 9999999999999999999999999999999999999999998875432 33455678899999999998654 458999
Q ss_pred EEeCCCCCchHHHHh--cccceeEecCCCC
Q 016911 352 AATNLPWELDAAMLR--RLEKRVSFSLIAL 379 (380)
Q Consensus 352 atTN~~~~Ld~aLlr--RF~~~I~~plPd~ 379 (380)
+|||+|+.||+|++| ||++.|+|++|+.
T Consensus 292 aATNrpd~LDpAllRpGRfD~~I~i~lPd~ 321 (405)
T 4b4t_J 292 MATNRLDILDPALLRPGRIDRKIEFPPPSV 321 (405)
T ss_dssp EEESCSSSSCHHHHSTTSSCCEEECCCCCH
T ss_pred eccCChhhCCHhHcCCCcCceEEEcCCcCH
Confidence 999999999999999 9999999999984
No 2
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.1e-33 Score=281.07 Aligned_cols=182 Identities=38% Similarity=0.620 Sum_probs=164.6
Q ss_pred chhhccCCCCccccccchHHHHHHHHHHHhccccCccccccc-CCCCceEEEEcCCCCcHHHHHHHHHHhcCCeEEEEec
Q 016911 197 RDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISA 275 (380)
Q Consensus 197 ~~~~~~~p~~~~~~l~Gl~~~k~~L~~~l~~~l~~~~~~~~~-~~~~~~vLL~GppGtGKT~la~ala~~l~~~~v~v~~ 275 (380)
.......|+.+|++|+|++++++.|++.+..|+.+++.|... +.+++++|||||||||||++|+++|++++.+|+.+++
T Consensus 169 ~~~~~~~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~~ 248 (434)
T 4b4t_M 169 AMEVDEKPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFLKLAA 248 (434)
T ss_dssp CCEEESSCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEG
T ss_pred hcccCCCCCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEEeh
Confidence 334456789999999999999999999999999999999876 7889999999999999999999999999999999999
Q ss_pred chhhhhhccchHHHHHHHHHHHHhcCCeEEEEcCcchhhhhccccch-hhHHHHHHHHHHHHHhcCCccCCCcEEEEEEe
Q 016911 276 SSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARS-EHEASRRLKTELLIQMDGLTQSDELVFVLAAT 354 (380)
Q Consensus 276 s~l~~~~~ge~e~~l~~lf~~A~~~~p~ILfIDEiD~l~~~~~~~~~-~~~~~~~i~~~Ll~~ldgl~~~~~~VlVIatT 354 (380)
+++.+.|+|++++.++.+|..|+..+|+||||||+|.+++.+..... ......+++..|+.+||++.... +|+||+||
T Consensus 249 s~l~~~~vGese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~~-~ViVIaaT 327 (434)
T 4b4t_M 249 PQLVQMYIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDD-RVKVLAAT 327 (434)
T ss_dssp GGGCSSCSSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSSC-SSEEEEEC
T ss_pred hhhhhcccchHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCCC-CEEEEEeC
Confidence 99999999999999999999999999999999999999988754433 23456678899999999987544 58899999
Q ss_pred CCCCCchHHHHh--cccceeEecCCCC
Q 016911 355 NLPWELDAAMLR--RLEKRVSFSLIAL 379 (380)
Q Consensus 355 N~~~~Ld~aLlr--RF~~~I~~plPd~ 379 (380)
|+|+.||+|++| ||++.|+|++|+.
T Consensus 328 Nrp~~LD~AllRpGRfD~~I~i~lPd~ 354 (434)
T 4b4t_M 328 NRVDVLDPALLRSGRLDRKIEFPLPSE 354 (434)
T ss_dssp SSCCCCCTTTCSTTSEEEEEECCCCCH
T ss_pred CCchhcCHhHhcCCceeEEEEeCCcCH
Confidence 999999999999 9999999999984
No 3
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.98 E-value=5e-33 Score=280.52 Aligned_cols=180 Identities=38% Similarity=0.634 Sum_probs=163.2
Q ss_pred hhccCCCCccccccchHHHHHHHHHHHhccccCccccccc-CCCCceEEEEcCCCCcHHHHHHHHHHhcCCeEEEEecch
Q 016911 199 IIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASS 277 (380)
Q Consensus 199 ~~~~~p~~~~~~l~Gl~~~k~~L~~~l~~~l~~~~~~~~~-~~~~~~vLL~GppGtGKT~la~ala~~l~~~~v~v~~s~ 277 (380)
.....|+.+|++|+|+++++++|++.+..|+.+++.|... +.+++++|||||||||||++|+++|++++.+|+.+++++
T Consensus 172 ~~~~~p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~s~ 251 (437)
T 4b4t_I 172 KMDKSPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSE 251 (437)
T ss_dssp EEESSCCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEESGG
T ss_pred eeccCCCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCCEEEEEHHH
Confidence 3456799999999999999999999999999999999876 788899999999999999999999999999999999999
Q ss_pred hhhhhccchHHHHHHHHHHHHhcCCeEEEEcCcchhhhhccccch-hhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCC
Q 016911 278 VVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARS-EHEASRRLKTELLIQMDGLTQSDELVFVLAATNL 356 (380)
Q Consensus 278 l~~~~~ge~e~~l~~lf~~A~~~~p~ILfIDEiD~l~~~~~~~~~-~~~~~~~i~~~Ll~~ldgl~~~~~~VlVIatTN~ 356 (380)
+.+.|+|++++.++.+|..|+..+|+||||||+|.++..+..... .+....+++.+|+.++|++... .+|+||+|||+
T Consensus 252 l~sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~-~~ViVIaATNr 330 (437)
T 4b4t_I 252 LIQKYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDR-GDVKVIMATNK 330 (437)
T ss_dssp GCCSSSSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCS-SSEEEEEEESC
T ss_pred hhhccCchHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCC-CCEEEEEeCCC
Confidence 999999999999999999999999999999999999988754322 2334567888999999988654 45899999999
Q ss_pred CCCchHHHHh--cccceeEecCCCC
Q 016911 357 PWELDAAMLR--RLEKRVSFSLIAL 379 (380)
Q Consensus 357 ~~~Ld~aLlr--RF~~~I~~plPd~ 379 (380)
++.||+|++| ||++.|+|++|+.
T Consensus 331 pd~LDpALlRpGRfD~~I~v~lPd~ 355 (437)
T 4b4t_I 331 IETLDPALIRPGRIDRKILFENPDL 355 (437)
T ss_dssp STTCCTTSSCTTTEEEEECCCCCCH
T ss_pred hhhcCHHHhcCCceeEEEEcCCcCH
Confidence 9999999999 9999999999984
No 4
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.98 E-value=8e-33 Score=280.89 Aligned_cols=184 Identities=39% Similarity=0.622 Sum_probs=165.3
Q ss_pred ccchhhccCCCCccccccchHHHHHHHHHHHhccccCccccccc-CCCCceEEEEcCCCCcHHHHHHHHHHhcCCeEEEE
Q 016911 195 LCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNI 273 (380)
Q Consensus 195 ~~~~~~~~~p~~~~~~l~Gl~~~k~~L~~~l~~~l~~~~~~~~~-~~~~~~vLL~GppGtGKT~la~ala~~l~~~~v~v 273 (380)
+........|+.+|++|+|++++++.|++.+..|+.+++.|... +.|++|+|||||||||||++|+++|++++.+|+.+
T Consensus 167 ~~~~~~~~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v 246 (437)
T 4b4t_L 167 VYNMTSFEQGEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFS 246 (437)
T ss_dssp CSSCEEEESCSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEE
T ss_pred hheeeeccCCCCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEE
Confidence 33444556799999999999999999999999999999999876 88999999999999999999999999999999999
Q ss_pred ecchhhhhhccchHHHHHHHHHHHHhcCCeEEEEcCcchhhhhccccc-hhhHHHHHHHHHHHHHhcCCccCCCcEEEEE
Q 016911 274 SASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEAR-SEHEASRRLKTELLIQMDGLTQSDELVFVLA 352 (380)
Q Consensus 274 ~~s~l~~~~~ge~e~~l~~lf~~A~~~~p~ILfIDEiD~l~~~~~~~~-~~~~~~~~i~~~Ll~~ldgl~~~~~~VlVIa 352 (380)
+++++.++|.|++++.++.+|..|+...|+||||||+|.+++.+...+ ..+....+++++||.+||++.... +|+||+
T Consensus 247 ~~s~l~sk~~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~-~vivI~ 325 (437)
T 4b4t_L 247 PASGIVDKYIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLG-QTKIIM 325 (437)
T ss_dssp EGGGTCCSSSSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTT-SSEEEE
T ss_pred ehhhhccccchHHHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCC-CeEEEE
Confidence 999999999999999999999999999999999999999998875432 234456778899999999987544 588999
Q ss_pred EeCCCCCchHHHHh--cccceeEecCCCC
Q 016911 353 ATNLPWELDAAMLR--RLEKRVSFSLIAL 379 (380)
Q Consensus 353 tTN~~~~Ld~aLlr--RF~~~I~~plPd~ 379 (380)
|||+|+.||+|++| ||++.|+||+|+.
T Consensus 326 ATNrp~~LDpAllRpGRfD~~I~i~lPd~ 354 (437)
T 4b4t_L 326 ATNRPDTLDPALLRPGRLDRKVEIPLPNE 354 (437)
T ss_dssp EESSTTSSCTTTTSTTSEEEEECCCCCCH
T ss_pred ecCCchhhCHHHhCCCccceeeecCCcCH
Confidence 99999999999998 6999999999984
No 5
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.98 E-value=2.9e-32 Score=277.18 Aligned_cols=179 Identities=39% Similarity=0.669 Sum_probs=163.7
Q ss_pred hccCCCCccccccchHHHHHHHHHHHhccccCccccccc-CCCCceEEEEcCCCCcHHHHHHHHHHhcCCeEEEEecchh
Q 016911 200 IRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSV 278 (380)
Q Consensus 200 ~~~~p~~~~~~l~Gl~~~k~~L~~~l~~~l~~~~~~~~~-~~~~~~vLL~GppGtGKT~la~ala~~l~~~~v~v~~s~l 278 (380)
....|+++|++|+|++++++.|++.+..++.+++.|... +.+++++|||||||||||++|+++|++++.+|+.++++++
T Consensus 200 v~e~P~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs~s~L 279 (467)
T 4b4t_H 200 VEEKPDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSEL 279 (467)
T ss_dssp EESSCSCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEEGGGG
T ss_pred ecCCCCCCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCeEEEEhHHh
Confidence 346799999999999999999999999999999999876 7899999999999999999999999999999999999999
Q ss_pred hhhhccchHHHHHHHHHHHHhcCCeEEEEcCcchhhhhcccc-chhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCCC
Q 016911 279 VSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEA-RSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLP 357 (380)
Q Consensus 279 ~~~~~ge~e~~l~~lf~~A~~~~p~ILfIDEiD~l~~~~~~~-~~~~~~~~~i~~~Ll~~ldgl~~~~~~VlVIatTN~~ 357 (380)
.+.|+|++++.++.+|..|+..+|+||||||+|.++..+... ........+++.+++.+||++... ..|+||+|||++
T Consensus 280 ~sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~-~~ViVIaATNrp 358 (467)
T 4b4t_H 280 VQKYVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPR-GNIKVMFATNRP 358 (467)
T ss_dssp CCCSSSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCT-TTEEEEEECSCT
T ss_pred hcccCCHHHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCC-CcEEEEeCCCCc
Confidence 999999999999999999999999999999999999887543 333455677888999999998654 458999999999
Q ss_pred CCchHHHHh--cccceeEecCCCC
Q 016911 358 WELDAAMLR--RLEKRVSFSLIAL 379 (380)
Q Consensus 358 ~~Ld~aLlr--RF~~~I~~plPd~ 379 (380)
+.||+|++| ||++.|+|++|+.
T Consensus 359 d~LDpALlRpGRFD~~I~i~lPd~ 382 (467)
T 4b4t_H 359 NTLDPALLRPGRIDRKVEFSLPDL 382 (467)
T ss_dssp TSBCHHHHSTTTCCEEECCCCCCH
T ss_pred ccCChhhhccccccEEEEeCCcCH
Confidence 999999999 9999999999984
No 6
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.97 E-value=3.8e-32 Score=275.37 Aligned_cols=179 Identities=41% Similarity=0.700 Sum_probs=162.6
Q ss_pred hccCCCCccccccchHHHHHHHHHHHhccccCccccccc-CCCCceEEEEcCCCCcHHHHHHHHHHhcCCeEEEEecchh
Q 016911 200 IRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSV 278 (380)
Q Consensus 200 ~~~~p~~~~~~l~Gl~~~k~~L~~~l~~~l~~~~~~~~~-~~~~~~vLL~GppGtGKT~la~ala~~l~~~~v~v~~s~l 278 (380)
....|+.+|++|+|++++++.|++.+..++.+++.|... +.+++|+|||||||||||++|+++|++++.+|+.++++++
T Consensus 163 ~~~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~~~l 242 (428)
T 4b4t_K 163 ENEKPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEF 242 (428)
T ss_dssp EESSCSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEEGGGT
T ss_pred CCCCCCCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEecchh
Confidence 446789999999999999999999999999999999875 8899999999999999999999999999999999999999
Q ss_pred hhhhccchHHHHHHHHHHHHhcCCeEEEEcCcchhhhhccccc-hhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCCC
Q 016911 279 VSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEAR-SEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLP 357 (380)
Q Consensus 279 ~~~~~ge~e~~l~~lf~~A~~~~p~ILfIDEiD~l~~~~~~~~-~~~~~~~~i~~~Ll~~ldgl~~~~~~VlVIatTN~~ 357 (380)
.+.|+|++++.++.+|..|+..+|+||||||+|.++..+.... ..+....+++++|+.+||++.... +|+||+|||++
T Consensus 243 ~~~~~Ge~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~~-~v~vI~aTN~~ 321 (428)
T 4b4t_K 243 VHKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQST-NVKVIMATNRA 321 (428)
T ss_dssp CCSSCSHHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSSC-SEEEEEEESCS
T ss_pred hccccchhHHHHHHHHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCCCC-CEEEEEecCCh
Confidence 9999999999999999999999999999999999998875332 233456788999999999987544 58999999999
Q ss_pred CCchHHHHh--cccceeEec-CCCC
Q 016911 358 WELDAAMLR--RLEKRVSFS-LIAL 379 (380)
Q Consensus 358 ~~Ld~aLlr--RF~~~I~~p-lPd~ 379 (380)
+.+|++++| ||+..|+|| +|+.
T Consensus 322 ~~LD~AllRpGRfd~~I~~p~lPd~ 346 (428)
T 4b4t_K 322 DTLDPALLRPGRLDRKIEFPSLRDR 346 (428)
T ss_dssp SSCCHHHHSSSSEEEEEECCSSCCH
T ss_pred hhcChhhhcCCcceEEEEcCCCCCH
Confidence 999999999 999999996 8873
No 7
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=99.97 E-value=1.5e-30 Score=280.84 Aligned_cols=183 Identities=39% Similarity=0.741 Sum_probs=153.9
Q ss_pred chhhccCCCCccccccchHHHHHHHHHHHhccccCccccccc-CCCCceEEEEcCCCCcHHHHHHHHHHhcCCeEEEEec
Q 016911 197 RDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISA 275 (380)
Q Consensus 197 ~~~~~~~p~~~~~~l~Gl~~~k~~L~~~l~~~l~~~~~~~~~-~~~~~~vLL~GppGtGKT~la~ala~~l~~~~v~v~~ 275 (380)
++.....|...|++++|++++++.|++.+.+++++++.|... ..+++++||+||||||||++|+++|.+++.+|+.++.
T Consensus 465 r~~~~~~p~v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v~~ 544 (806)
T 3cf2_A 465 RETVVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKG 544 (806)
T ss_dssp CCCCCBCCCCCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTCEEEECCH
T ss_pred ccccccCCCCCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCCceEEecc
Confidence 444556688899999999999999999999999999999876 7889999999999999999999999999999999999
Q ss_pred chhhhhhccchHHHHHHHHHHHHhcCCeEEEEcCcchhhhhcccc-chhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEe
Q 016911 276 SSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEA-RSEHEASRRLKTELLIQMDGLTQSDELVFVLAAT 354 (380)
Q Consensus 276 s~l~~~~~ge~e~~l~~lf~~A~~~~p~ILfIDEiD~l~~~~~~~-~~~~~~~~~i~~~Ll~~ldgl~~~~~~VlVIatT 354 (380)
+++.++|+|++++.++.+|..|+...||||||||+|.+++.++.. ...+...++++++||.+||++... .+|+||+||
T Consensus 545 ~~l~s~~vGese~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~~-~~V~vi~aT 623 (806)
T 3cf2_A 545 PELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTK-KNVFIIGAT 623 (806)
T ss_dssp HHHHTTTCSSCHHHHHHHHHHHHTTCSEEEECSCGGGCC--------------CHHHHHHHHHHHSSCSS-SSEEEECC-
T ss_pred chhhccccchHHHHHHHHHHHHHHcCCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCCCC-CCEEEEEeC
Confidence 999999999999999999999999999999999999999887543 334556788999999999999754 459999999
Q ss_pred CCCCCchHHHHh--cccceeEecCCCCC
Q 016911 355 NLPWELDAAMLR--RLEKRVSFSLIALT 380 (380)
Q Consensus 355 N~~~~Ld~aLlr--RF~~~I~~plPd~~ 380 (380)
|+|+.||++++| ||++.++|++|+.+
T Consensus 624 N~p~~lD~AllRpgRfd~~i~v~lPd~~ 651 (806)
T 3cf2_A 624 NRPDIIDPAILRPGRLDQLIYIPLPDEK 651 (806)
T ss_dssp CCSSSSCHHHHSTTTSCCEEEC-----C
T ss_pred CCchhCCHhHcCCCcceEEEEECCcCHH
Confidence 999999999999 99999999999863
No 8
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=99.96 E-value=5.2e-28 Score=236.30 Aligned_cols=178 Identities=57% Similarity=0.985 Sum_probs=162.2
Q ss_pred hccCCCCccccccchHHHHHHHHHHHhccccCcccccccCCCCceEEEEcCCCCcHHHHHHHHHHhc-CCeEEEEecchh
Q 016911 200 IRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC-KTTFFNISASSV 278 (380)
Q Consensus 200 ~~~~p~~~~~~l~Gl~~~k~~L~~~l~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~l-~~~~v~v~~s~l 278 (380)
....|..+|++|+|++++++.|++.+..++.+++.+.+...+++++||+||||||||++|+++|+++ +.+++.++++++
T Consensus 3 ~~~~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~~i~~~~l 82 (322)
T 1xwi_A 3 VIERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDL 82 (322)
T ss_dssp EEECCCCCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTTSCEEEEEECCSS
T ss_pred eecCCCCCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcCCCcEEEEEhHHH
Confidence 3456888999999999999999999999999999998777888999999999999999999999999 889999999999
Q ss_pred hhhhccchHHHHHHHHHHHHhcCCeEEEEcCcchhhhhccccchhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCCCC
Q 016911 279 VSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPW 358 (380)
Q Consensus 279 ~~~~~ge~e~~l~~lf~~A~~~~p~ILfIDEiD~l~~~~~~~~~~~~~~~~i~~~Ll~~ldgl~~~~~~VlVIatTN~~~ 358 (380)
...+.|+.++.++.+|..+....|+||||||+|.+.+.++.. ......++.++++..++++......++||+|||+++
T Consensus 83 ~~~~~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~--~~~~~~~~~~~ll~~ld~~~~~~~~v~vI~atn~~~ 160 (322)
T 1xwi_A 83 VSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSEN--ESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPW 160 (322)
T ss_dssp CCSSCCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSC--CTTHHHHHHHHHHHHHHCSSSCCTTEEEEEEESCTT
T ss_pred HhhhhhHHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccc--cchHHHHHHHHHHHHHhcccccCCCEEEEEecCCcc
Confidence 999999999999999999999999999999999998876543 334567888999999999876667799999999999
Q ss_pred CchHHHHhcccceeEecCCCC
Q 016911 359 ELDAAMLRRLEKRVSFSLIAL 379 (380)
Q Consensus 359 ~Ld~aLlrRF~~~I~~plPd~ 379 (380)
.+|++++|||+..+++++|+.
T Consensus 161 ~ld~al~rRf~~~i~i~~P~~ 181 (322)
T 1xwi_A 161 VLDSAIRRRFEKRIYIPLPEP 181 (322)
T ss_dssp TSCHHHHHTCCEEEECCCCCH
T ss_pred cCCHHHHhhcCeEEEeCCcCH
Confidence 999999999999999999984
No 9
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=99.95 E-value=7.2e-29 Score=267.81 Aligned_cols=174 Identities=40% Similarity=0.679 Sum_probs=160.4
Q ss_pred CCCCccccccchHHHHHHHHHHHhccccCccccccc-CCCCceEEEEcCCCCcHHHHHHHHHHhcCCeEEEEecchhhhh
Q 016911 203 SPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSK 281 (380)
Q Consensus 203 ~p~~~~~~l~Gl~~~k~~L~~~l~~~l~~~~~~~~~-~~~~~~vLL~GppGtGKT~la~ala~~l~~~~v~v~~s~l~~~ 281 (380)
.|..+|++|.|+++++++|++.+..++.+++.|... +.|++++||+||||||||++|+++|++++.+++.++++++.++
T Consensus 198 ~~~v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~~~l~sk 277 (806)
T 3cf2_A 198 LNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSK 277 (806)
T ss_dssp SSSCCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEHHHHHSS
T ss_pred CCCCChhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCeEEEEEhHHhhcc
Confidence 467889999999999999999999999999999987 7899999999999999999999999999999999999999999
Q ss_pred hccchHHHHHHHHHHHHhcCCeEEEEcCcchhhhhccccchhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCCCCCch
Q 016911 282 WRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELD 361 (380)
Q Consensus 282 ~~ge~e~~l~~lf~~A~~~~p~ILfIDEiD~l~~~~~~~~~~~~~~~~i~~~Ll~~ldgl~~~~~~VlVIatTN~~~~Ld 361 (380)
|.|++++.++.+|..|+...|+||||||+|.+++.++... +...++++++|+.+|+++.... .|+||+|||+++.+|
T Consensus 278 ~~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~--~~~~~riv~~LL~~mdg~~~~~-~V~VIaaTN~~d~LD 354 (806)
T 3cf2_A 278 LAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTH--GEVERRIVSQLLTLMDGLKQRA-HVIVMAATNRPNSID 354 (806)
T ss_dssp CTTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCC--CTTHHHHHHHHHTHHHHCCGGG-CEEEEEECSSTTTSC
T ss_pred cchHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCC--ChHHHHHHHHHHHHHhcccccC-CEEEEEecCChhhcC
Confidence 9999999999999999999999999999999998876433 2345788999999999986544 589999999999999
Q ss_pred HHHHh--cccceeEecCCCC
Q 016911 362 AAMLR--RLEKRVSFSLIAL 379 (380)
Q Consensus 362 ~aLlr--RF~~~I~~plPd~ 379 (380)
++++| ||++.|++++|+.
T Consensus 355 ~ALrR~GRFd~~I~i~~Pd~ 374 (806)
T 3cf2_A 355 PALRRFGRFDREVDIGIPDA 374 (806)
T ss_dssp TTTTSTTSSCEEEECCCCCH
T ss_pred HHHhCCcccceEEecCCCCH
Confidence 99999 9999999999984
No 10
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=99.95 E-value=7.8e-28 Score=234.25 Aligned_cols=180 Identities=56% Similarity=0.970 Sum_probs=160.8
Q ss_pred hhhccCCCCccccccchHHHHHHHHHHHhccccCcccccccCCCCceEEEEcCCCCcHHHHHHHHHHhcCCeEEEEecch
Q 016911 198 DIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASS 277 (380)
Q Consensus 198 ~~~~~~p~~~~~~l~Gl~~~k~~L~~~l~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~l~~~~v~v~~s~ 277 (380)
.+....|+..|++++|++++++.|.+.+..++.+++.+.....+++++||+||||||||++|+++|++++.+++.+++++
T Consensus 7 ~~~~~~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~v~~~~ 86 (322)
T 3eie_A 7 AILSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSD 86 (322)
T ss_dssp CSEEECCCCCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHHTCEEEEEEHHH
T ss_pred ceeecCCCCCHHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHHCCCEEEEchHH
Confidence 44566788999999999999999999999999999988888888899999999999999999999999999999999999
Q ss_pred hhhhhccchHHHHHHHHHHHHhcCCeEEEEcCcchhhhhccccchhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCCC
Q 016911 278 VVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLP 357 (380)
Q Consensus 278 l~~~~~ge~e~~l~~lf~~A~~~~p~ILfIDEiD~l~~~~~~~~~~~~~~~~i~~~Ll~~ldgl~~~~~~VlVIatTN~~ 357 (380)
+.+.+.|+.++.++.+|..+....|+||||||+|.+.+.+... .....+++.+.++..++++......++||+|||.+
T Consensus 87 l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~--~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~atn~~ 164 (322)
T 3eie_A 87 LVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEG--ESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIP 164 (322)
T ss_dssp HHTTTGGGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC--------CCTHHHHHHHHHHHGGGGTSCCCEEEEEEESCG
T ss_pred HhhcccchHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCC--cchHHHHHHHHHHHHhccccccCCceEEEEecCCh
Confidence 9999999999999999999999999999999999998765432 23345678889999999887667789999999999
Q ss_pred CCchHHHHhcccceeEecCCCC
Q 016911 358 WELDAAMLRRLEKRVSFSLIAL 379 (380)
Q Consensus 358 ~~Ld~aLlrRF~~~I~~plPd~ 379 (380)
+.+|+++++||+..+++++|+.
T Consensus 165 ~~ld~al~~Rf~~~i~~~~p~~ 186 (322)
T 3eie_A 165 WQLDSAIRRRFERRIYIPLPDL 186 (322)
T ss_dssp GGSCHHHHHHCCEEEECCCCCH
T ss_pred hhCCHHHHcccCeEEEeCCCCH
Confidence 9999999999999999999984
No 11
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=99.94 E-value=3.9e-27 Score=233.01 Aligned_cols=181 Identities=56% Similarity=0.964 Sum_probs=150.6
Q ss_pred chhhccCCCCccccccchHHHHHHHHHHHhccccCcccccccCCCCceEEEEcCCCCcHHHHHHHHHHhcCCeEEEEecc
Q 016911 197 RDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISAS 276 (380)
Q Consensus 197 ~~~~~~~p~~~~~~l~Gl~~~k~~L~~~l~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~l~~~~v~v~~s 276 (380)
..+....|...|++|+|++.+++.|.+.+..++.+++.+.....+++++||+||||||||++|+++|++++.+++.++++
T Consensus 39 ~~~~~~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~v~~~ 118 (355)
T 2qp9_X 39 SAILSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSS 118 (355)
T ss_dssp --------CCCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHHTCEEEEEEHH
T ss_pred hhhcccCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEeeHH
Confidence 33444567889999999999999999999999999999888788889999999999999999999999999999999999
Q ss_pred hhhhhhccchHHHHHHHHHHHHhcCCeEEEEcCcchhhhhccccchhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCC
Q 016911 277 SVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNL 356 (380)
Q Consensus 277 ~l~~~~~ge~e~~l~~lf~~A~~~~p~ILfIDEiD~l~~~~~~~~~~~~~~~~i~~~Ll~~ldgl~~~~~~VlVIatTN~ 356 (380)
++...+.|+.++.++.+|..+....|+||||||+|.+.+.+... .....+++.++|+..++++......++||+|||.
T Consensus 119 ~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~--~~~~~~~~~~~ll~~l~~~~~~~~~v~vI~atn~ 196 (355)
T 2qp9_X 119 DLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEG--ESEASRRIKTELLVQMNGVGNDSQGVLVLGATNI 196 (355)
T ss_dssp HHHSCC---CHHHHHHHHHHHHHTSSEEEEEECGGGGTC--------CTHHHHHHHHHHHHHHHCC---CCEEEEEEESC
T ss_pred HHhhhhcchHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCC--cchHHHHHHHHHHHHhhcccccCCCeEEEeecCC
Confidence 99999999999999999999999899999999999998765432 3345677889999999988666677999999999
Q ss_pred CCCchHHHHhcccceeEecCCCC
Q 016911 357 PWELDAAMLRRLEKRVSFSLIAL 379 (380)
Q Consensus 357 ~~~Ld~aLlrRF~~~I~~plPd~ 379 (380)
++.+++++++||+..+++++|+.
T Consensus 197 ~~~ld~al~rRf~~~i~i~~P~~ 219 (355)
T 2qp9_X 197 PWQLDSAIRRRFERRIYIPLPDL 219 (355)
T ss_dssp GGGSCHHHHHTCCEEEECCCCCH
T ss_pred cccCCHHHHcccCEEEEeCCcCH
Confidence 99999999999999999999984
No 12
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=99.93 E-value=2.1e-26 Score=234.28 Aligned_cols=182 Identities=57% Similarity=0.966 Sum_probs=151.7
Q ss_pred cchhhccCCCCccccccchHHHHHHHHHHHhccccCcccccccCCCCceEEEEcCCCCcHHHHHHHHHHhc-CCeEEEEe
Q 016911 196 CRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC-KTTFFNIS 274 (380)
Q Consensus 196 ~~~~~~~~p~~~~~~l~Gl~~~k~~L~~~l~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~l-~~~~v~v~ 274 (380)
...+....|...|++|+|++++++.|.+.+..++.+++.+.+...+++++||+||||||||++|+++|.++ +.+++.++
T Consensus 121 ~~~i~~~~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v~ 200 (444)
T 2zan_A 121 QGAIVIERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSIS 200 (444)
T ss_dssp ---CBCCCCCCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHCCSSEEEEEC
T ss_pred hcceeccCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHcCCCCEEEEe
Confidence 34455567888999999999999999999988999998888767788999999999999999999999999 88999999
Q ss_pred cchhhhhhccchHHHHHHHHHHHHhcCCeEEEEcCcchhhhhccccchhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEe
Q 016911 275 ASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAAT 354 (380)
Q Consensus 275 ~s~l~~~~~ge~e~~l~~lf~~A~~~~p~ILfIDEiD~l~~~~~~~~~~~~~~~~i~~~Ll~~ldgl~~~~~~VlVIatT 354 (380)
++++.+.+.|+.+..++.+|..+....|+||||||+|.+.+.+... .....+++.+.++..++++......++||+||
T Consensus 201 ~~~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~--~~~~~~~~~~~lL~~l~~~~~~~~~v~vI~at 278 (444)
T 2zan_A 201 SSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSEN--ESEAARRIKTEFLVQMQGVGVDNDGILVLGAT 278 (444)
T ss_dssp CC---------CCCTHHHHHHHHHHSCSEEEEESCTTTTCCCSSCC--CCGGGHHHHHHHHTTTTCSSCCCSSCEEEEEE
T ss_pred HHHHHhhhcchHHHHHHHHHHHHHHcCCeEEEEechHhhccCCCCc--cccHHHHHHHHHHHHHhCcccCCCCEEEEecC
Confidence 9999999999999999999999999999999999999998766543 23345678899999999886656779999999
Q ss_pred CCCCCchHHHHhcccceeEecCCCC
Q 016911 355 NLPWELDAAMLRRLEKRVSFSLIAL 379 (380)
Q Consensus 355 N~~~~Ld~aLlrRF~~~I~~plPd~ 379 (380)
|+++.++++++|||+..+++++|+.
T Consensus 279 n~~~~ld~al~rRf~~~i~i~~P~~ 303 (444)
T 2zan_A 279 NIPWVLDSAIRRRFEKRIYIPLPEA 303 (444)
T ss_dssp SCGGGSCHHHHTTCCEEEECCCCCH
T ss_pred CCccccCHHHHhhcceEEEeCCcCH
Confidence 9999999999999999999999984
No 13
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=99.93 E-value=1.7e-26 Score=222.92 Aligned_cols=182 Identities=40% Similarity=0.743 Sum_probs=157.0
Q ss_pred chhhccCCCCccccccchHHHHHHHHHHHhccccCccccccc-CCCCceEEEEcCCCCcHHHHHHHHHHhcCCeEEEEec
Q 016911 197 RDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISA 275 (380)
Q Consensus 197 ~~~~~~~p~~~~~~l~Gl~~~k~~L~~~l~~~l~~~~~~~~~-~~~~~~vLL~GppGtGKT~la~ala~~l~~~~v~v~~ 275 (380)
++.....|..+|++++|++++++.+.+.+..++.+++.+... ..++.++||+||||||||++|+++|+.++.+++.+++
T Consensus 3 ~~~~~~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~~ 82 (301)
T 3cf0_A 3 RETVVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKG 82 (301)
T ss_dssp CCCCEECCCCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEECH
T ss_pred ccccccCCCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCCCEEEEEh
Confidence 455667789999999999999999999999888888877665 6788999999999999999999999999999999999
Q ss_pred chhhhhhccchHHHHHHHHHHHHhcCCeEEEEcCcchhhhhccccch-hhHHHHHHHHHHHHHhcCCccCCCcEEEEEEe
Q 016911 276 SSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARS-EHEASRRLKTELLIQMDGLTQSDELVFVLAAT 354 (380)
Q Consensus 276 s~l~~~~~ge~e~~l~~lf~~A~~~~p~ILfIDEiD~l~~~~~~~~~-~~~~~~~i~~~Ll~~ldgl~~~~~~VlVIatT 354 (380)
+++...+.|+.++.++.+|..+....|+||||||+|.+...++.... ......++++.++..++++.. ..+++||+||
T Consensus 83 ~~l~~~~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~-~~~v~vi~at 161 (301)
T 3cf0_A 83 PELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMST-KKNVFIIGAT 161 (301)
T ss_dssp HHHHHHHHTTCTTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCT-TSSEEEEEEE
T ss_pred HHHHhhhcCchHHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccC-CCCEEEEEec
Confidence 99999999999999999999999999999999999999876542211 111234567788999988754 3468999999
Q ss_pred CCCCCchHHHHh--cccceeEecCCCC
Q 016911 355 NLPWELDAAMLR--RLEKRVSFSLIAL 379 (380)
Q Consensus 355 N~~~~Ld~aLlr--RF~~~I~~plPd~ 379 (380)
|+++.+|+++++ ||+..+++++|+.
T Consensus 162 n~~~~ld~al~r~gRf~~~i~i~~p~~ 188 (301)
T 3cf0_A 162 NRPDIIDPAILRPGRLDQLIYIPLPDE 188 (301)
T ss_dssp SCGGGSCGGGGSTTSSCEEEECCCCCH
T ss_pred CCccccChHHhcCCccceEEecCCcCH
Confidence 999999999999 9999999999974
No 14
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=99.92 E-value=7.1e-25 Score=209.36 Aligned_cols=183 Identities=54% Similarity=0.886 Sum_probs=154.0
Q ss_pred ccchhhccCCCCccccccchHHHHHHHHHHHhccccCcccccccCCCCceEEEEcCCCCcHHHHHHHHHHhcCCeEEEEe
Q 016911 195 LCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNIS 274 (380)
Q Consensus 195 ~~~~~~~~~p~~~~~~l~Gl~~~k~~L~~~l~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~l~~~~v~v~ 274 (380)
+.+++....+...|++++|.+.+++.+.+.+..+..+++.+.+...++.++||+||||||||++|+++|+.++.+++.++
T Consensus 7 ~~~~~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~~~~~~~i~ 86 (297)
T 3b9p_A 7 ILDEIVEGGAKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATECSATFLNIS 86 (297)
T ss_dssp HHTTTBCCSSCCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHTTCEEEEEE
T ss_pred HHHHhccCCCCCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEee
Confidence 34455556688899999999999999999998888888888777778899999999999999999999999999999999
Q ss_pred cchhhhhhccchHHHHHHHHHHHHhcCCeEEEEcCcchhhhhccccchhhHHHHHHHHHHHHHhcCCccC--CCcEEEEE
Q 016911 275 ASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQS--DELVFVLA 352 (380)
Q Consensus 275 ~s~l~~~~~ge~e~~l~~lf~~A~~~~p~ILfIDEiD~l~~~~~~~~~~~~~~~~i~~~Ll~~ldgl~~~--~~~VlVIa 352 (380)
++++...+.++.+..++.+|..+....|+||||||+|.+...++... ......+.+.++..+++.... ...++||+
T Consensus 87 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~--~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~ 164 (297)
T 3b9p_A 87 AASLTSKYVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSE--HEASRRLKTEFLVEFDGLPGNPDGDRIVVLA 164 (297)
T ss_dssp STTTSSSSCSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-------CCSHHHHHHHHHHHHHCC------CEEEEE
T ss_pred HHHHhhcccchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCc--chHHHHHHHHHHHHHhcccccCCCCcEEEEe
Confidence 99999999999999999999999999999999999999987654321 222345667788888776433 24689999
Q ss_pred EeCCCCCchHHHHhcccceeEecCCCC
Q 016911 353 ATNLPWELDAAMLRRLEKRVSFSLIAL 379 (380)
Q Consensus 353 tTN~~~~Ld~aLlrRF~~~I~~plPd~ 379 (380)
+||.++.+++++++||+..+++++|+.
T Consensus 165 ~tn~~~~l~~~l~~R~~~~i~~~~p~~ 191 (297)
T 3b9p_A 165 ATNRPQELDEAALRRFTKRVYVSLPDE 191 (297)
T ss_dssp EESCGGGBCHHHHHHCCEEEECCCCCH
T ss_pred ecCChhhCCHHHHhhCCeEEEeCCcCH
Confidence 999999999999999999999999974
No 15
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=99.92 E-value=1.4e-24 Score=214.57 Aligned_cols=183 Identities=52% Similarity=0.873 Sum_probs=155.7
Q ss_pred ccchhhccCCCCccccccchHHHHHHHHHHHhccccCcccccccCCCCceEEEEcCCCCcHHHHHHHHHHhcCCeEEEEe
Q 016911 195 LCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNIS 274 (380)
Q Consensus 195 ~~~~~~~~~p~~~~~~l~Gl~~~k~~L~~~l~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~l~~~~v~v~ 274 (380)
+..++....+...|++++|++.+++.+.+.+..++..++.+.....+++++||+||||||||++|+++|..++.+++.++
T Consensus 70 i~~~i~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~i~ 149 (357)
T 3d8b_A 70 IMNEIMDHGPPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQSGATFFSIS 149 (357)
T ss_dssp HHHHTBCCSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHHTTCEEEEEE
T ss_pred HHhhcccCCCCCCHHHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHHcCCeEEEEe
Confidence 33445556678899999999999999999998888888887777778899999999999999999999999999999999
Q ss_pred cchhhhhhccchHHHHHHHHHHHHhcCCeEEEEcCcchhhhhccccchhhHHHHHHHHHHHHHhcCCcc-CCCcEEEEEE
Q 016911 275 ASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQ-SDELVFVLAA 353 (380)
Q Consensus 275 ~s~l~~~~~ge~e~~l~~lf~~A~~~~p~ILfIDEiD~l~~~~~~~~~~~~~~~~i~~~Ll~~ldgl~~-~~~~VlVIat 353 (380)
++++...+.++.+..++.+|..+....|+||||||+|.+...+.. ..+....++++.++..+++... ....++||+|
T Consensus 150 ~~~l~~~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~--~~~~~~~~~~~~lL~~l~~~~~~~~~~v~vI~a 227 (357)
T 3d8b_A 150 ASSLTSKWVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGD--GEHESSRRIKTEFLVQLDGATTSSEDRILVVGA 227 (357)
T ss_dssp GGGGCCSSTTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC--------CHHHHHHHHHHHHHHC----CCCCEEEEEE
T ss_pred hHHhhccccchHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCC--CcchHHHHHHHHHHHHHhcccccCCCCEEEEEe
Confidence 999999999999999999999999889999999999999876542 2233456788889999987743 3457999999
Q ss_pred eCCCCCchHHHHhcccceeEecCCCC
Q 016911 354 TNLPWELDAAMLRRLEKRVSFSLIAL 379 (380)
Q Consensus 354 TN~~~~Ld~aLlrRF~~~I~~plPd~ 379 (380)
||.++.+++++++||+..+++++|+.
T Consensus 228 tn~~~~l~~~l~~Rf~~~i~i~~p~~ 253 (357)
T 3d8b_A 228 TNRPQEIDEAARRRLVKRLYIPLPEA 253 (357)
T ss_dssp ESCGGGBCHHHHTTCCEEEECCCCCH
T ss_pred cCChhhCCHHHHhhCceEEEeCCcCH
Confidence 99999999999999999999999974
No 16
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=99.92 E-value=1.6e-24 Score=216.09 Aligned_cols=184 Identities=52% Similarity=0.831 Sum_probs=148.1
Q ss_pred hccchhhccCCCCccccccchHHHHHHHHHHHhccccCcccccccCCCCceEEEEcCCCCcHHHHHHHHHHhcCCeEEEE
Q 016911 194 SLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNI 273 (380)
Q Consensus 194 ~~~~~~~~~~p~~~~~~l~Gl~~~k~~L~~~l~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~l~~~~v~v 273 (380)
.+..++....+...|++++|++.+++.+.+.+..+..+++.+.+...+++++||+||||||||++|+++|..++.+++.+
T Consensus 100 ~~~~~~~~~~~~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~~~~~~~v 179 (389)
T 3vfd_A 100 LIMNEIVDNGTAVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAESNATFFNI 179 (389)
T ss_dssp TGGGTTBCCSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEE
T ss_pred HHHhhhhccCCCCChHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhhcCcEEEe
Confidence 34455566678889999999999999999999888888888887777889999999999999999999999999999999
Q ss_pred ecchhhhhhccchHHHHHHHHHHHHhcCCeEEEEcCcchhhhhccccchhhHHHHHHHHHHHHHhcCCcc-CCCcEEEEE
Q 016911 274 SASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQ-SDELVFVLA 352 (380)
Q Consensus 274 ~~s~l~~~~~ge~e~~l~~lf~~A~~~~p~ILfIDEiD~l~~~~~~~~~~~~~~~~i~~~Ll~~ldgl~~-~~~~VlVIa 352 (380)
+|+++.+.+.++.+..++.+|..+....|+||||||+|.+...+... ......+++..|+..+++... ....++||+
T Consensus 180 ~~~~l~~~~~g~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~--~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~ 257 (389)
T 3vfd_A 180 SAASLTSKYVGEGEKLVRALFAVARELQPSIIFIDQVDSLLCERREG--EHDASRRLKTEFLIEFDGVQSAGDDRVLVMG 257 (389)
T ss_dssp CSCCC-------CHHHHHHHHHHHHHSSSEEEEEETGGGGC----------CTHHHHHHHHHHHHHHHC-----CEEEEE
T ss_pred eHHHhhccccchHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCc--cchHHHHHHHHHHHHhhcccccCCCCEEEEE
Confidence 99999999999999999999999999999999999999997765422 233356777888888887754 345699999
Q ss_pred EeCCCCCchHHHHhcccceeEecCCCC
Q 016911 353 ATNLPWELDAAMLRRLEKRVSFSLIAL 379 (380)
Q Consensus 353 tTN~~~~Ld~aLlrRF~~~I~~plPd~ 379 (380)
|||.++.+++++++||...+++++|+.
T Consensus 258 atn~~~~l~~~l~~R~~~~i~i~~p~~ 284 (389)
T 3vfd_A 258 ATNRPQELDEAVLRRFIKRVYVSLPNE 284 (389)
T ss_dssp EESCGGGCCHHHHTTCCEEEECCCCCH
T ss_pred ecCCchhcCHHHHcCcceEEEcCCcCH
Confidence 999999999999999999999999974
No 17
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.91 E-value=1.2e-24 Score=208.21 Aligned_cols=175 Identities=40% Similarity=0.685 Sum_probs=141.8
Q ss_pred cCCCCccccccchHHHHHHHHHHHhccccCccccccc-CCCCceEEEEcCCCCcHHHHHHHHHHhcCCeEEEEecchhhh
Q 016911 202 GSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVS 280 (380)
Q Consensus 202 ~~p~~~~~~l~Gl~~~k~~L~~~l~~~l~~~~~~~~~-~~~~~~vLL~GppGtGKT~la~ala~~l~~~~v~v~~s~l~~ 280 (380)
..|..+|++++|++++++.+.+.+..++..++.+..+ ..++++++|+||||||||+|++++|+.++.+++.+++.++..
T Consensus 3 ~~~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~~~~i~i~g~~l~~ 82 (274)
T 2x8a_A 3 TVPNVTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLN 82 (274)
T ss_dssp ---------CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEEETTTTCS
T ss_pred CCCCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcCCCEEEEEcHHHHh
Confidence 3577899999999999999999988899888888776 677788999999999999999999999999999999999988
Q ss_pred hhccchHHHHHHHHHHHHhcCCeEEEEcCcchhhhhccccchhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCCCCCc
Q 016911 281 KWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWEL 360 (380)
Q Consensus 281 ~~~ge~e~~l~~lf~~A~~~~p~ILfIDEiD~l~~~~~~~~~~~~~~~~i~~~Ll~~ldgl~~~~~~VlVIatTN~~~~L 360 (380)
.+.++.++.++.+|..+....|+++|+||+|.+...+... ......++.++++.+|++.... ..++++++||+|+.+
T Consensus 83 ~~~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~--~~~~~~~~~~~~l~~Lsgg~~~-~~~i~ia~tn~p~~L 159 (274)
T 2x8a_A 83 MYVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDR--ETGASVRVVNQLLTEMDGLEAR-QQVFIMAATNRPDII 159 (274)
T ss_dssp STTHHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC-----------CTTHHHHHHHHHHTCCST-TCEEEEEEESCGGGS
T ss_pred hhhhHHHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCC--cchHHHHHHHHHHHhhhccccc-CCEEEEeecCChhhC
Confidence 8888889999999999988889999999999987654321 1122345678899999987543 458899999999999
Q ss_pred hHHHHh--cccceeEecCCCC
Q 016911 361 DAAMLR--RLEKRVSFSLIAL 379 (380)
Q Consensus 361 d~aLlr--RF~~~I~~plPd~ 379 (380)
|++++| ||++.+++++|+.
T Consensus 160 D~al~r~gRfd~~i~~~~P~~ 180 (274)
T 2x8a_A 160 DPAILRPGRLDKTLFVGLPPP 180 (274)
T ss_dssp CHHHHSTTSSCEEEECCSCCH
T ss_pred CHhhcCcccCCeEEEeCCcCH
Confidence 999999 9999999999984
No 18
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=99.91 E-value=8.9e-24 Score=200.37 Aligned_cols=177 Identities=43% Similarity=0.697 Sum_probs=151.6
Q ss_pred cCCCCccccccchHHHHHHHHHHHhccccCccccccc-CCCCceEEEEcCCCCcHHHHHHHHHHhcCCeEEEEecchhhh
Q 016911 202 GSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVS 280 (380)
Q Consensus 202 ~~p~~~~~~l~Gl~~~k~~L~~~l~~~l~~~~~~~~~-~~~~~~vLL~GppGtGKT~la~ala~~l~~~~v~v~~s~l~~ 280 (380)
..|...|++++|++++++.+.+.+..++..++.+... ..++.++||+||||||||++|+++|+.++.+++.++++++..
T Consensus 10 ~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~ 89 (285)
T 3h4m_A 10 ERPNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNATFIRVVGSELVK 89 (285)
T ss_dssp SSCCCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTCEEEEEEGGGGCC
T ss_pred CCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehHHHHH
Confidence 4577889999999999999999988888777776665 567889999999999999999999999999999999999999
Q ss_pred hhccchHHHHHHHHHHHHhcCCeEEEEcCcchhhhhccccc-hhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCCCCC
Q 016911 281 KWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEAR-SEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWE 359 (380)
Q Consensus 281 ~~~ge~e~~l~~lf~~A~~~~p~ILfIDEiD~l~~~~~~~~-~~~~~~~~i~~~Ll~~ldgl~~~~~~VlVIatTN~~~~ 359 (380)
.+.+..+..++.+|..+....|+||||||+|.+.+.+.... .........+..++..++++... ..++||+|||.++.
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~-~~~~vI~ttn~~~~ 168 (285)
T 3h4m_A 90 KFIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDAR-GDVKIIGATNRPDI 168 (285)
T ss_dssp CSTTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSS-SSEEEEEECSCGGG
T ss_pred hccchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCC-CCEEEEEeCCCchh
Confidence 99999999999999999999999999999999987654321 12233455667778888766443 45889999999999
Q ss_pred chHHHHh--cccceeEecCCCC
Q 016911 360 LDAAMLR--RLEKRVSFSLIAL 379 (380)
Q Consensus 360 Ld~aLlr--RF~~~I~~plPd~ 379 (380)
+++++++ ||+..+.++.|+.
T Consensus 169 l~~~l~~~~Rf~~~i~~~~p~~ 190 (285)
T 3h4m_A 169 LDPAILRPGRFDRIIEVPAPDE 190 (285)
T ss_dssp BCHHHHSTTSEEEEEECCCCCH
T ss_pred cCHHHcCCCcCCeEEEECCCCH
Confidence 9999999 9999999999974
No 19
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=99.90 E-value=1.6e-23 Score=195.56 Aligned_cols=174 Identities=37% Similarity=0.570 Sum_probs=133.2
Q ss_pred CCCccccccchHHHHHHHHHHHhccccCccccccc-CCCCceEEEEcCCCCcHHHHHHHHHHhcCCeEEEEecchhhhhh
Q 016911 204 PDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKW 282 (380)
Q Consensus 204 p~~~~~~l~Gl~~~k~~L~~~l~~~l~~~~~~~~~-~~~~~~vLL~GppGtGKT~la~ala~~l~~~~v~v~~s~l~~~~ 282 (380)
|...|++++|++.+++.+.+.+.. +..++.+... ..+++++||+||||||||++|+++|++++.+++.++++++...+
T Consensus 1 ~~~~~~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~ 79 (262)
T 2qz4_A 1 MGVSFKDVAGMHEAKLEVREFVDY-LKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGAEFVEVI 79 (262)
T ss_dssp CCCCTTSSCSCHHHHHHHHHHHHH-HHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCCEEEEETTTTSSSS
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHH-HHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHHHhhc
Confidence 457899999999999999987654 5555555443 56778999999999999999999999999999999999998888
Q ss_pred ccchHHHHHHHHHHHHhcCCeEEEEcCcchhhhhccccch--hhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCCCCCc
Q 016911 283 RGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARS--EHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWEL 360 (380)
Q Consensus 283 ~ge~e~~l~~lf~~A~~~~p~ILfIDEiD~l~~~~~~~~~--~~~~~~~i~~~Ll~~ldgl~~~~~~VlVIatTN~~~~L 360 (380)
.+.....++.+|..+....|+||||||+|.+...+..... ........+..++..+++... ...++||+|||.++.+
T Consensus 80 ~~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~-~~~~~vi~~tn~~~~l 158 (262)
T 2qz4_A 80 GGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGT-TDHVIVLASTNRADIL 158 (262)
T ss_dssp TTHHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCT-TCCEEEEEEESCGGGG
T ss_pred cChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCC-CCCEEEEecCCChhhc
Confidence 8888899999999999888999999999999776532110 122234566778888877643 3468899999999999
Q ss_pred hHHHHh--cccceeEecCCCC
Q 016911 361 DAAMLR--RLEKRVSFSLIAL 379 (380)
Q Consensus 361 d~aLlr--RF~~~I~~plPd~ 379 (380)
|+++++ ||+..+++++|+.
T Consensus 159 d~~l~~~~R~~~~i~i~~p~~ 179 (262)
T 2qz4_A 159 DGALMRPGRLDRHVFIDLPTL 179 (262)
T ss_dssp GSGGGSTTSCCEEEECCSCCH
T ss_pred CHHHhcCCcCCeEEEeCCcCH
Confidence 999999 9999999999974
No 20
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=99.90 E-value=2.9e-23 Score=194.63 Aligned_cols=176 Identities=39% Similarity=0.612 Sum_probs=144.4
Q ss_pred cCCCCccccccchHHHHHHHHHHHhccccCccccccc-CCCCceEEEEcCCCCcHHHHHHHHHHhcCCeEEEEecchhhh
Q 016911 202 GSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVS 280 (380)
Q Consensus 202 ~~p~~~~~~l~Gl~~~k~~L~~~l~~~l~~~~~~~~~-~~~~~~vLL~GppGtGKT~la~ala~~l~~~~v~v~~s~l~~ 280 (380)
..+...|++++|++.+++.+.+.+.. +..++.+... ...+++++|+||||||||++|+++|+.++.+++.++++++..
T Consensus 5 ~~~~~~~~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~i~~~~~~~ 83 (257)
T 1lv7_A 5 DQIKTTFADVAGCDEAKEEVAELVEY-LREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVE 83 (257)
T ss_dssp CSSCCCGGGSCSCHHHHHHTHHHHHH-HHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEECSCSSTT
T ss_pred cCCCCCHHHhcCcHHHHHHHHHHHHH-HhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCCEEEEeHHHHHH
Confidence 45677899999999999999887654 4455555444 466789999999999999999999999999999999999998
Q ss_pred hhccchHHHHHHHHHHHHhcCCeEEEEcCcchhhhhcccc-chhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCCCCC
Q 016911 281 KWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEA-RSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWE 359 (380)
Q Consensus 281 ~~~ge~e~~l~~lf~~A~~~~p~ILfIDEiD~l~~~~~~~-~~~~~~~~~i~~~Ll~~ldgl~~~~~~VlVIatTN~~~~ 359 (380)
.+.+..++.++.+|..+....|+++||||+|.+...++.. ........+.++.++..++++.. ...++||+|||.++.
T Consensus 84 ~~~~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~-~~~~~vI~~tn~~~~ 162 (257)
T 1lv7_A 84 MFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEG-NEGIIVIAATNRPDV 162 (257)
T ss_dssp SCCCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCS-SSCEEEEEEESCTTT
T ss_pred HhhhhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCccc-CCCEEEEEeeCCchh
Confidence 8899999999999999998889999999999998765421 11222334677888899988754 445889999999999
Q ss_pred chHHHHh--cccceeEecCCCC
Q 016911 360 LDAAMLR--RLEKRVSFSLIAL 379 (380)
Q Consensus 360 Ld~aLlr--RF~~~I~~plPd~ 379 (380)
+++++++ ||+..+++++|+.
T Consensus 163 l~~~l~r~~rf~~~i~i~~P~~ 184 (257)
T 1lv7_A 163 LDPALLRPGRFDRQVVVGLPDV 184 (257)
T ss_dssp SCGGGGSTTSSCEEEECCCCCH
T ss_pred CCHHHcCCCcCCeEEEeCCCCH
Confidence 9999998 9999999999974
No 21
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=99.89 E-value=2.9e-23 Score=213.13 Aligned_cols=175 Identities=41% Similarity=0.631 Sum_probs=146.1
Q ss_pred CCCCccccccchHHHHHHHHHHHhccccCccccccc-CCCCceEEEEcCCCCcHHHHHHHHHHhcCCeEEEEecchhhhh
Q 016911 203 SPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSK 281 (380)
Q Consensus 203 ~p~~~~~~l~Gl~~~k~~L~~~l~~~l~~~~~~~~~-~~~~~~vLL~GppGtGKT~la~ala~~l~~~~v~v~~s~l~~~ 281 (380)
.+..+|++++|++++++++++.+.. +..+..+... ...++++||+||||||||++|+++|++++.+|+.++++++...
T Consensus 10 ~~~~~f~di~G~~~~~~~l~e~v~~-l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~f~~is~~~~~~~ 88 (476)
T 2ce7_A 10 NKRVTFKDVGGAEEAIEELKEVVEF-LKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVPFFHISGSDFVEL 88 (476)
T ss_dssp SCCCCGGGCCSCHHHHHHHHHHHHH-HHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGTTTC
T ss_pred CCCCCHHHhCCcHHHHHHHHHHHHH-hhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCeeeCCHHHHHHH
Confidence 4667899999999999999987654 4455555554 5677899999999999999999999999999999999999999
Q ss_pred hccchHHHHHHHHHHHHhcCCeEEEEcCcchhhhhcccc-chhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCCCCCc
Q 016911 282 WRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEA-RSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWEL 360 (380)
Q Consensus 282 ~~ge~e~~l~~lf~~A~~~~p~ILfIDEiD~l~~~~~~~-~~~~~~~~~i~~~Ll~~ldgl~~~~~~VlVIatTN~~~~L 360 (380)
+.|.....++.+|..+....|+||||||+|.+...++.. ...+....+++++|+..++++... ..++||++||+++.+
T Consensus 89 ~~g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~-~~viVIaaTn~~~~L 167 (476)
T 2ce7_A 89 FVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSK-EGIIVMAATNRPDIL 167 (476)
T ss_dssp CTTHHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGG-GTEEEEEEESCGGGS
T ss_pred HhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCC-CCEEEEEecCChhhh
Confidence 999999999999999999999999999999998765421 122334466788999999877543 458899999999999
Q ss_pred hHHHHh--cccceeEecCCCC
Q 016911 361 DAAMLR--RLEKRVSFSLIAL 379 (380)
Q Consensus 361 d~aLlr--RF~~~I~~plPd~ 379 (380)
|+++++ ||+..+.+++|+.
T Consensus 168 d~allR~gRFd~~i~i~~Pd~ 188 (476)
T 2ce7_A 168 DPALLRPGRFDKKIVVDPPDM 188 (476)
T ss_dssp CGGGGSTTSSCEEEECCCCCH
T ss_pred chhhcccCcceeEeecCCCCH
Confidence 999998 9999999999984
No 22
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=99.89 E-value=2.1e-23 Score=214.94 Aligned_cols=173 Identities=40% Similarity=0.687 Sum_probs=154.2
Q ss_pred CCCccccccchHHHHHHHHHHHhccccCccccccc-CCCCceEEEEcCCCCcHHHHHHHHHHhcCCeEEEEecchhhhhh
Q 016911 204 PDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKW 282 (380)
Q Consensus 204 p~~~~~~l~Gl~~~k~~L~~~l~~~l~~~~~~~~~-~~~~~~vLL~GppGtGKT~la~ala~~l~~~~v~v~~s~l~~~~ 282 (380)
+...|++++|++.+++.+.+.+..++.+++.+... ..++.++||+||||||||++|+++|+.++.+|+.++|+++.+.+
T Consensus 199 ~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~vn~~~l~~~~ 278 (489)
T 3hu3_A 199 NEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKL 278 (489)
T ss_dssp TCCCGGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCSSEEEEEEHHHHHTSC
T ss_pred CCCCHHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhCCCEEEEEchHhhhhh
Confidence 45679999999999999999999888888888776 67889999999999999999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHHHhcCCeEEEEcCcchhhhhccccchhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCCCCCchH
Q 016911 283 RGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDA 362 (380)
Q Consensus 283 ~ge~e~~l~~lf~~A~~~~p~ILfIDEiD~l~~~~~~~~~~~~~~~~i~~~Ll~~ldgl~~~~~~VlVIatTN~~~~Ld~ 362 (380)
.|+.+..++.+|..+....|+||||||+|.+.+.++.. ......+++..|+..+++... ...++||+|||+++.+++
T Consensus 279 ~g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~--~~~~~~~~~~~LL~~ld~~~~-~~~v~vIaaTn~~~~Ld~ 355 (489)
T 3hu3_A 279 AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKT--HGEVERRIVSQLLTLMDGLKQ-RAHVIVMAATNRPNSIDP 355 (489)
T ss_dssp TTHHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSC--CCHHHHHHHHHHHHHHHHSCT-TSCEEEEEEESCGGGBCG
T ss_pred cchhHHHHHHHHHHHHhcCCcEEEecchhhhccccccc--cchHHHHHHHHHHHHhhcccc-CCceEEEEecCCccccCH
Confidence 99999999999999999999999999999998876532 234557788899999987654 345899999999999999
Q ss_pred HHHh--cccceeEecCCCC
Q 016911 363 AMLR--RLEKRVSFSLIAL 379 (380)
Q Consensus 363 aLlr--RF~~~I~~plPd~ 379 (380)
++++ ||+..+++++|+.
T Consensus 356 al~r~gRf~~~i~i~~P~~ 374 (489)
T 3hu3_A 356 ALRRFGRFDREVDIGIPDA 374 (489)
T ss_dssp GGGSTTSSCEEEECCCCCH
T ss_pred HHhCCCcCceEEEeCCCCH
Confidence 9999 9999999999984
No 23
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.87 E-value=1.2e-23 Score=228.59 Aligned_cols=182 Identities=39% Similarity=0.737 Sum_probs=156.7
Q ss_pred hhhccCCCCccccccchHHHHHHHHHHHhccccCccccccc-CCCCceEEEEcCCCCcHHHHHHHHHHhcCCeEEEEecc
Q 016911 198 DIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISAS 276 (380)
Q Consensus 198 ~~~~~~p~~~~~~l~Gl~~~k~~L~~~l~~~l~~~~~~~~~-~~~~~~vLL~GppGtGKT~la~ala~~l~~~~v~v~~s 276 (380)
+.....+...|+++.|++.+++.+.+.+..++.+++.+... ..++.++||+||||||||++|+++|+.++.+++.++++
T Consensus 466 ~~~~~~~~v~~~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~ 545 (806)
T 1ypw_A 466 ETVVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGP 545 (806)
T ss_dssp CCCCCCCCCSSCSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHTCCCCCCCCS
T ss_pred hhcccCccccccccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhCCCEEEEech
Confidence 34455678889999999999999999988888888777665 67889999999999999999999999999999999999
Q ss_pred hhhhhhccchHHHHHHHHHHHHhcCCeEEEEcCcchhhhhcccc-chhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeC
Q 016911 277 SVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEA-RSEHEASRRLKTELLIQMDGLTQSDELVFVLAATN 355 (380)
Q Consensus 277 ~l~~~~~ge~e~~l~~lf~~A~~~~p~ILfIDEiD~l~~~~~~~-~~~~~~~~~i~~~Ll~~ldgl~~~~~~VlVIatTN 355 (380)
++...|+|+.++.++.+|..++...|+||||||+|.+...+... ........+++++|+..|+++... .+++||+|||
T Consensus 546 ~l~~~~~g~~~~~i~~~f~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~v~~~LL~~ld~~~~~-~~v~vI~tTN 624 (806)
T 1ypw_A 546 ELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTK-KNVFIIGATN 624 (806)
T ss_dssp SSTTCCTTTSSHHHHHHHHHHHHHCSBCCCCSSHHHHCCTTTTCCSHHHHHHHHHHHHHHTTCC-------CCBCCCCCB
T ss_pred HhhhhhcCccHHHHHHHHHHHHhcCCeEEEEEChhhhhhhccCCCCCcchhHHHHHHHHHHHHhccccc-CCeEEEEecC
Confidence 99999999999999999999999999999999999998776533 233456788999999999988544 4588999999
Q ss_pred CCCCchHHHHh--cccceeEecCCCCC
Q 016911 356 LPWELDAAMLR--RLEKRVSFSLIALT 380 (380)
Q Consensus 356 ~~~~Ld~aLlr--RF~~~I~~plPd~~ 380 (380)
+++.+|++++| ||+..++|++|+.+
T Consensus 625 ~~~~ld~allrpgRf~~~i~~~~p~~~ 651 (806)
T 1ypw_A 625 RPDIIDPAILRPGRLDQLIYIPLPDEK 651 (806)
T ss_dssp SCGGGSCTTSSGGGTTSCCCCCCCCCS
T ss_pred CcccCCHHHhCccccCceeecCCCCHH
Confidence 99999999999 99999999999863
No 24
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=99.86 E-value=6.4e-24 Score=199.87 Aligned_cols=178 Identities=40% Similarity=0.631 Sum_probs=140.3
Q ss_pred cCCCCccccccchHHHHHHHHHHHhccccCccccccc-CCCCceEEEEcCCCCcHHHHHHHHHHhcCCeEEEEecchhhh
Q 016911 202 GSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVS 280 (380)
Q Consensus 202 ~~p~~~~~~l~Gl~~~k~~L~~~l~~~l~~~~~~~~~-~~~~~~vLL~GppGtGKT~la~ala~~l~~~~v~v~~s~l~~ 280 (380)
..+...|++++|.+++++.+.+.+.. +.+++.+... ..+++++||+||||||||++|+++|+.++.+++.++++++..
T Consensus 4 ~~~~~~~~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~ 82 (268)
T 2r62_A 4 EKPNVRFKDMAGNEEAKEEVVEIVDF-LKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIE 82 (268)
T ss_dssp CCCCCCSTTSSSCTTTHHHHHHHHHH-HHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTCCCCCCCSCTTTT
T ss_pred cCCCCCHHHhCCcHHHHHHHHHHHHH-HHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEechHHHHH
Confidence 45677899999999999999987654 5555555443 566788999999999999999999999999999999999988
Q ss_pred hhccchHHHHHHHHHHHHhcCCeEEEEcCcchhhhhccccc--hhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCCCC
Q 016911 281 KWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEAR--SEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPW 358 (380)
Q Consensus 281 ~~~ge~e~~l~~lf~~A~~~~p~ILfIDEiD~l~~~~~~~~--~~~~~~~~i~~~Ll~~ldgl~~~~~~VlVIatTN~~~ 358 (380)
.+.+.....++.+|..+....|+||||||+|.+...+.... .......+.++.++..+++.......++||+|||.++
T Consensus 83 ~~~~~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~ttn~~~ 162 (268)
T 2r62_A 83 MFVGLGASRVRDLFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGSENAPVIVLAATNRPE 162 (268)
T ss_dssp SCSSSCSSSSSTTHHHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSSCSCSCCEEEECBSCCT
T ss_pred hhcchHHHHHHHHHHHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCcccCCCCEEEEEecCCch
Confidence 88887777778889999888899999999999976542110 0000112245567777877665556688999999999
Q ss_pred CchHHHHh--cccceeEecCCCCC
Q 016911 359 ELDAAMLR--RLEKRVSFSLIALT 380 (380)
Q Consensus 359 ~Ld~aLlr--RF~~~I~~plPd~~ 380 (380)
.+++++++ ||+..+++++|+.+
T Consensus 163 ~ld~~l~r~~Rf~~~i~i~~p~~~ 186 (268)
T 2r62_A 163 ILDPALMRPGRFDRQVLVDKPDFN 186 (268)
T ss_dssp TSCGGGGSSSSSCCCCBCCCCCTT
T ss_pred hcCHhHcCCCCCCeEEEecCcCHH
Confidence 99999999 99999999999863
No 25
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=99.86 E-value=1.2e-21 Score=202.15 Aligned_cols=175 Identities=39% Similarity=0.642 Sum_probs=146.0
Q ss_pred CCCCccccccchHHHHHHHHHHHhccccCccccccc-CCCCceEEEEcCCCCcHHHHHHHHHHhcCCeEEEEecchhhhh
Q 016911 203 SPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSK 281 (380)
Q Consensus 203 ~p~~~~~~l~Gl~~~k~~L~~~l~~~l~~~~~~~~~-~~~~~~vLL~GppGtGKT~la~ala~~l~~~~v~v~~s~l~~~ 281 (380)
.+..+|++++|+++++..+++.+.. +..+..+..+ ...+++++|+||||||||+||+++|+.++.+++.++++++...
T Consensus 25 ~~~~~f~dv~G~~~~k~~l~~lv~~-l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~~~~i~i~g~~~~~~ 103 (499)
T 2dhr_A 25 APKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEM 103 (499)
T ss_dssp CCCCCTTSSCSCHHHHHHHHHHHHH-HHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTTCCEEEEEGGGGTSS
T ss_pred CCCCCHHHcCCcHHHHHHHHHHHHH-hhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEehhHHHHh
Confidence 3778899999999999999987654 4445555554 5667889999999999999999999999999999999999888
Q ss_pred hccchHHHHHHHHHHHHhcCCeEEEEcCcchhhhhcccc-chhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCCCCCc
Q 016911 282 WRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEA-RSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWEL 360 (380)
Q Consensus 282 ~~ge~e~~l~~lf~~A~~~~p~ILfIDEiD~l~~~~~~~-~~~~~~~~~i~~~Ll~~ldgl~~~~~~VlVIatTN~~~~L 360 (380)
+.+.....++.+|+.+....|+|+||||+|.+...++.. ...+....+.+++++..+++... ...+++|++||+|+.+
T Consensus 104 ~~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~~-~~~viviAatn~p~~L 182 (499)
T 2dhr_A 104 FVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEK-DTAIVVMAATNRPDIL 182 (499)
T ss_dssp CTTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCCS-SCCCEEEECCSCGGGS
T ss_pred hhhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhccccc-CccEEEEEecCChhhc
Confidence 888888889999999887789999999999997655421 11233345678889999998764 3457899999999999
Q ss_pred hHHHHh--cccceeEecCCCC
Q 016911 361 DAAMLR--RLEKRVSFSLIAL 379 (380)
Q Consensus 361 d~aLlr--RF~~~I~~plPd~ 379 (380)
|++++| ||+..+.+++|+.
T Consensus 183 D~aLlr~gRfdr~i~i~~Pd~ 203 (499)
T 2dhr_A 183 DPALLRPGRFDRQIAIDAPDV 203 (499)
T ss_dssp CTTTSSTTSSCCEEECCCCCH
T ss_pred CcccccccccceEEecCCCCH
Confidence 999998 9999999999984
No 26
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=99.85 E-value=5.2e-21 Score=178.95 Aligned_cols=178 Identities=38% Similarity=0.634 Sum_probs=140.6
Q ss_pred hccCCCCccccccchHHHHHHHHHHHhccccCccccccc-CCCCceEEEEcCCCCcHHHHHHHHHHhcCCeEEEEecchh
Q 016911 200 IRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSV 278 (380)
Q Consensus 200 ~~~~p~~~~~~l~Gl~~~k~~L~~~l~~~l~~~~~~~~~-~~~~~~vLL~GppGtGKT~la~ala~~l~~~~v~v~~s~l 278 (380)
....|..+|++++|.++++..+++.... ...+..+... ...+++++|+|||||||||+++++++.++.+++.+++.++
T Consensus 7 ~~~~~~~~~~~i~g~~~~~~~l~~l~~~-~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~~~~i~~~~~~~ 85 (254)
T 1ixz_A 7 LTEAPKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDF 85 (254)
T ss_dssp -CCCCSCCGGGCCSCHHHHHHHHHHHHH-HHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred ccCCCCCCHHHhCCcHHHHHHHHHHHHH-HHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeeHHHH
Confidence 3456888999999999999999876554 3333444443 4566789999999999999999999999999999999988
Q ss_pred hhhhccchHHHHHHHHHHHHhcCCeEEEEcCcchhhhhcccc-chhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCCC
Q 016911 279 VSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEA-RSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLP 357 (380)
Q Consensus 279 ~~~~~ge~e~~l~~lf~~A~~~~p~ILfIDEiD~l~~~~~~~-~~~~~~~~~i~~~Ll~~ldgl~~~~~~VlVIatTN~~ 357 (380)
...+.+...+.+..+|+.+....|+++++||+|.+...+... ........+.++.++..+++... ...++++++||.|
T Consensus 86 ~~~~~~~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~-~~~~i~~a~t~~p 164 (254)
T 1ixz_A 86 VEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEK-DTAIVVMAATNRP 164 (254)
T ss_dssp HHSCTTHHHHHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCT-TCCEEEEEEESCG
T ss_pred HHHHhhHHHHHHHHHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCC-CCCEEEEEccCCc
Confidence 877777778888899999887788999999999987654321 11223345677888889987754 3458899999999
Q ss_pred CCchHHHHh--cccceeEecCCCC
Q 016911 358 WELDAAMLR--RLEKRVSFSLIAL 379 (380)
Q Consensus 358 ~~Ld~aLlr--RF~~~I~~plPd~ 379 (380)
+.+|++++| ||+..+++++|+.
T Consensus 165 ~~ld~~l~r~~rf~~~i~i~~p~~ 188 (254)
T 1ixz_A 165 DILDPALLRPGRFDRQIAIDAPDV 188 (254)
T ss_dssp GGSCGGGGSTTSSCEEEECCSCCH
T ss_pred hhCCHHHcCCCcCCeEEeeCCcCH
Confidence 999999998 9999999999984
No 27
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=99.85 E-value=8.7e-22 Score=189.65 Aligned_cols=138 Identities=22% Similarity=0.230 Sum_probs=101.7
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHhcCCeEEEEecchhhhhhccchHHHHHHHHHHH----HhcCCeEEEEcCcchhh
Q 016911 239 LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELA----RHHAPSTIFLDEIDAII 314 (380)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~la~ala~~l~~~~v~v~~s~l~~~~~ge~e~~l~~lf~~A----~~~~p~ILfIDEiD~l~ 314 (380)
.++++++||+||||||||++|+++|+.++.+++.++++++...+.|+.+..++.+|..+ +...|+||||||+|++.
T Consensus 33 ~~~p~~lLl~GppGtGKT~la~aiA~~l~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~vl~iDEiD~~~ 112 (293)
T 3t15_A 33 IKVPLILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLFINDLDAGA 112 (293)
T ss_dssp CCCCSEEEEEECTTSCHHHHHHHHHHHHTCCCEEEEHHHHHCC---HHHHHHHHHHHHHHHHHTTSSCCCEEEECCC---
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCEEEEeHHHhhhccCchhHHHHHHHHHHHHHHHhcCCCeEEEEechhhhc
Confidence 46778999999999999999999999999999999999999999999999999999988 56679999999999998
Q ss_pred hhccccchhhHHHHHHHHHHHHHhcCCc----------cCCCcEEEEEEeCCCCCchHHHHh--cccceeEecCCC
Q 016911 315 SQRGEARSEHEASRRLKTELLIQMDGLT----------QSDELVFVLAATNLPWELDAAMLR--RLEKRVSFSLIA 378 (380)
Q Consensus 315 ~~~~~~~~~~~~~~~i~~~Ll~~ldgl~----------~~~~~VlVIatTN~~~~Ld~aLlr--RF~~~I~~plPd 378 (380)
+............+.+.+.|+..+|+.. ....+++||+|||+++.+|++++| ||+..++ +|+
T Consensus 113 ~~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~ttN~~~~ld~al~R~~R~d~~i~--~P~ 186 (293)
T 3t15_A 113 GRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APT 186 (293)
T ss_dssp -----------CHHHHHHHHHHHHHCCC-----------CCCCCCEEEECSSCCC--CHHHHHHHEEEEEE--CCC
T ss_pred CCCCCCccccchHHHHHHHHHHHhccccccccccccccccCCCcEEEEecCCcccCCHHHhCCCCCceeEe--CcC
Confidence 7544322222234456678888887443 123468899999999999999997 9988776 454
No 28
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=99.84 E-value=5.1e-20 Score=174.96 Aligned_cols=176 Identities=39% Similarity=0.637 Sum_probs=139.2
Q ss_pred cCCCCccccccchHHHHHHHHHHHhccccCccccccc-CCCCceEEEEcCCCCcHHHHHHHHHHhcCCeEEEEecchhhh
Q 016911 202 GSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVS 280 (380)
Q Consensus 202 ~~p~~~~~~l~Gl~~~k~~L~~~l~~~l~~~~~~~~~-~~~~~~vLL~GppGtGKT~la~ala~~l~~~~v~v~~s~l~~ 280 (380)
..|..+|++++|.+++++.+...... ...+..+..+ ...+++++|+|||||||||+++++++.++.+++.+++.++..
T Consensus 33 ~~~~~~~~~i~g~~~~~~~l~~l~~~-~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~~~~i~~~~~~~~~ 111 (278)
T 1iy2_A 33 EAPKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVE 111 (278)
T ss_dssp CCCCCCGGGSSSCHHHHHHHHHHHHH-HHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHH
T ss_pred CCCCCCHHHhCChHHHHHHHHHHHHH-HHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcCCCEEEecHHHHHH
Confidence 44778899999999999999876544 2333334333 455677999999999999999999999999999999998887
Q ss_pred hhccchHHHHHHHHHHHHhcCCeEEEEcCcchhhhhcccc-chhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCCCCC
Q 016911 281 KWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEA-RSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWE 359 (380)
Q Consensus 281 ~~~ge~e~~l~~lf~~A~~~~p~ILfIDEiD~l~~~~~~~-~~~~~~~~~i~~~Ll~~ldgl~~~~~~VlVIatTN~~~~ 359 (380)
.+.+...+.+..+|+.+....|+++++||+|.+...+... ..........+..++..+++... ...++++++||.|+.
T Consensus 112 ~~~~~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~-~~~~i~~a~t~~p~~ 190 (278)
T 1iy2_A 112 MFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEK-DTAIVVMAATNRPDI 190 (278)
T ss_dssp STTTHHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCT-TCCEEEEEEESCTTS
T ss_pred HHhhHHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCC-CCCEEEEEecCCchh
Confidence 7777778888899999987788999999999987654321 11122345667788888887653 445889999999999
Q ss_pred chHHHHh--cccceeEecCCCC
Q 016911 360 LDAAMLR--RLEKRVSFSLIAL 379 (380)
Q Consensus 360 Ld~aLlr--RF~~~I~~plPd~ 379 (380)
+|+++++ ||+..+++++|+.
T Consensus 191 ld~~l~r~~rf~~~i~i~~p~~ 212 (278)
T 1iy2_A 191 LDPALLRPGRFDRQIAIDAPDV 212 (278)
T ss_dssp SCHHHHSTTSSCCEEECCCCCH
T ss_pred CCHhHcCCCcCCeEEEeCCcCH
Confidence 9999998 9999999999984
No 29
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.82 E-value=1.7e-20 Score=203.67 Aligned_cols=174 Identities=40% Similarity=0.677 Sum_probs=155.0
Q ss_pred CCCCccccccchHHHHHHHHHHHhccccCccccccc-CCCCceEEEEcCCCCcHHHHHHHHHHhcCCeEEEEecchhhhh
Q 016911 203 SPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSK 281 (380)
Q Consensus 203 ~p~~~~~~l~Gl~~~k~~L~~~l~~~l~~~~~~~~~-~~~~~~vLL~GppGtGKT~la~ala~~l~~~~v~v~~s~l~~~ 281 (380)
.+...|++|+|++.+++.+.+.+..++.+++.+..+ +.++.++||+||||||||++|+++|+.++.+++.+++.++.+.
T Consensus 198 ~~~v~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~~~i~v~~~~l~~~ 277 (806)
T 1ypw_A 198 LNEVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSK 277 (806)
T ss_dssp SSSCCGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTCEEEEEEHHHHSSS
T ss_pred cCCCCHHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCcEEEEEchHhhhh
Confidence 356789999999999999999999999999988877 7888999999999999999999999999999999999999999
Q ss_pred hccchHHHHHHHHHHHHhcCCeEEEEcCcchhhhhccccchhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCCCCCch
Q 016911 282 WRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELD 361 (380)
Q Consensus 282 ~~ge~e~~l~~lf~~A~~~~p~ILfIDEiD~l~~~~~~~~~~~~~~~~i~~~Ll~~ldgl~~~~~~VlVIatTN~~~~Ld 361 (380)
+.++.+..++.+|..+....|+++||||+|.+.+.+... .....+++...++..+++.... ..+++|++||+++.+|
T Consensus 278 ~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~--~~~~~~~~~~~Ll~ll~g~~~~-~~v~vI~atn~~~~ld 354 (806)
T 1ypw_A 278 LAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKT--HGEVERRIVSQLLTLMDGLKQR-AHVIVMAATNRPNSID 354 (806)
T ss_dssp STTHHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCC--CSHHHHHHHHHHHHHHHSSCTT-SCCEEEEECSCTTTSC
T ss_pred hhhhHHHHHHHHHHHHHhcCCcEEEeccHHHhhhccccc--cchHHHHHHHHHHHHhhhhccc-ccEEEecccCCchhcC
Confidence 999999999999999999899999999999998776432 2344567888899999887654 4588999999999999
Q ss_pred HHHHh--cccceeEecCCCC
Q 016911 362 AAMLR--RLEKRVSFSLIAL 379 (380)
Q Consensus 362 ~aLlr--RF~~~I~~plPd~ 379 (380)
+++++ ||+..+.+++|+.
T Consensus 355 ~al~r~gRf~~~i~i~~p~~ 374 (806)
T 1ypw_A 355 PALRRFGRFDREVDIGIPDA 374 (806)
T ss_dssp TTTTSTTSSCEEECCCCCCH
T ss_pred HHHhcccccccccccCCCCH
Confidence 99998 9999999999974
No 30
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=99.77 E-value=7.8e-20 Score=186.26 Aligned_cols=168 Identities=20% Similarity=0.219 Sum_probs=124.7
Q ss_pred CCCccccccchHHHHHHHHHHHhccccCcccccccCCCCceEEEEcCCCCcHHHHHHHHHHhcC--CeEEEEecchhhhh
Q 016911 204 PDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECK--TTFFNISASSVVSK 281 (380)
Q Consensus 204 p~~~~~~l~Gl~~~k~~L~~~l~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~l~--~~~v~v~~s~l~~~ 281 (380)
|...|++++|++++++.+...+... .....+++++||+||||||||++|+++|+.++ .+|+.++++++...
T Consensus 32 ~~~~~~~iiG~~~~~~~l~~~~~~~-------~~~~~~~~~iLl~GppGtGKT~la~ala~~l~~~~~~~~~~~~~~~~~ 104 (456)
T 2c9o_A 32 AKQAASGLVGQENAREACGVIVELI-------KSKKMAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYST 104 (456)
T ss_dssp BCSEETTEESCHHHHHHHHHHHHHH-------HTTCCTTCEEEEECCTTSSHHHHHHHHHHHHCTTSCEEEEEGGGGCCS
T ss_pred hhhchhhccCHHHHHHHHHHHHHHH-------HhCCCCCCeEEEECCCcCCHHHHHHHHHHHhCCCceEEEEeHHHHHHH
Confidence 5566899999999999888765432 12234678999999999999999999999998 99999999999999
Q ss_pred hccchHHHHHHHHHHH---HhcCCeEEEEcCcchhhhhccccchhh--HHHH---------------HHHHHHHHHhcCC
Q 016911 282 WRGDSEKLIKVLFELA---RHHAPSTIFLDEIDAIISQRGEARSEH--EASR---------------RLKTELLIQMDGL 341 (380)
Q Consensus 282 ~~ge~e~~l~~lf~~A---~~~~p~ILfIDEiD~l~~~~~~~~~~~--~~~~---------------~i~~~Ll~~ldgl 341 (380)
+.++++. ++..|..+ +...|+||||||+|.+.+.+....... .... ++...++..++..
T Consensus 105 ~~~~~~~-~~~~f~~a~~~~~~~~~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~~ 183 (456)
T 2c9o_A 105 EIKKTEV-LMENFRRAIGLRIKETKEVYEGEVTELTPCETENPMGGYGKTISHVIIGLKTAKGTKQLKLDPSIFESLQKE 183 (456)
T ss_dssp SSCHHHH-HHHHHHHTEEEEEEEEEEEEEEEEEEEEEC--------------CEEEEEEETTEEEEEEECHHHHHHHHHT
T ss_pred hhhhhHH-HHHHHHHHHhhhhcCCcEEEEechhhcccccCCCCCCCcchHHHHHHHHHhccccchhHhhhHHHHHHHhhc
Confidence 9999987 88999999 777899999999999988765321110 0000 1122355555422
Q ss_pred c-cCCCcEEEEEEeCCCCCchHHHHh--cccc--eeEecCCCC
Q 016911 342 T-QSDELVFVLAATNLPWELDAAMLR--RLEK--RVSFSLIAL 379 (380)
Q Consensus 342 ~-~~~~~VlVIatTN~~~~Ld~aLlr--RF~~--~I~~plPd~ 379 (380)
. .....++|++|||+++.+|+++++ ||+. .+.+|+|+.
T Consensus 184 ~~~~~~~v~i~attn~~~~ld~a~~r~~rfd~~~~~~v~~p~~ 226 (456)
T 2c9o_A 184 RVEAGDVIYIEANSGAVKRQGRCDTYATEFDLEAEEYVPLPKG 226 (456)
T ss_dssp TCCTTEEEEEETTTCCEEEEEEETTSCCTTSCSSSSEECCCCS
T ss_pred cCCCCCEEEEEcCCCCcccCChhhcCCcccCcceeEecCCCch
Confidence 1 223446666999999999999976 9988 778888853
No 31
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.72 E-value=9.5e-18 Score=160.36 Aligned_cols=159 Identities=19% Similarity=0.255 Sum_probs=120.1
Q ss_pred cccchHHHHHHHHHHHhccccCcccccc----cCCCCceEEEEcCCCCcHHHHHHHHHHhc-------CCeEEEEecchh
Q 016911 210 SIKGLENAKRLLKEAVVMPIKYPKYFTG----LLSPWKGILLFGPPGTGKTMLAKAVATEC-------KTTFFNISASSV 278 (380)
Q Consensus 210 ~l~Gl~~~k~~L~~~l~~~l~~~~~~~~----~~~~~~~vLL~GppGtGKT~la~ala~~l-------~~~~v~v~~s~l 278 (380)
+++|++.+++.+.+.+..... ++.... ...++.++||+||||||||++|+++|+.+ +.+++.++++++
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~-~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~l 110 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLV-ERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDL 110 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHH-HHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGGT
T ss_pred HccChHHHHHHHHHHHHHHHh-HHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHHh
Confidence 799999999999987655331 221111 13456789999999999999999999988 348999999999
Q ss_pred hhhhccchHHHHHHHHHHHHhcCCeEEEEcCcchhhhhccccchhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCCCC
Q 016911 279 VSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPW 358 (380)
Q Consensus 279 ~~~~~ge~e~~l~~lf~~A~~~~p~ILfIDEiD~l~~~~~~~~~~~~~~~~i~~~Ll~~ldgl~~~~~~VlVIatTN~~~ 358 (380)
...+.|.....+..+|..+. ++||||||+|.+...++... .....++.|+..++. ...++.+|++||.+.
T Consensus 111 ~~~~~g~~~~~~~~~~~~~~---~~vl~iDEid~l~~~~~~~~----~~~~~~~~Ll~~l~~---~~~~~~~i~~~~~~~ 180 (309)
T 3syl_A 111 VGQYIGHTAPKTKEVLKRAM---GGVLFIDEAYYLYRPDNERD----YGQEAIEILLQVMEN---NRDDLVVILAGYADR 180 (309)
T ss_dssp CCSSTTCHHHHHHHHHHHHT---TSEEEEETGGGSCCCC---C----CTHHHHHHHHHHHHH---CTTTCEEEEEECHHH
T ss_pred hhhcccccHHHHHHHHHhcC---CCEEEEEChhhhccCCCccc----ccHHHHHHHHHHHhc---CCCCEEEEEeCChHH
Confidence 99999998888888888774 68999999999975443211 123456667777753 344577888998754
Q ss_pred -----CchHHHHhcccceeEecCCCC
Q 016911 359 -----ELDAAMLRRLEKRVSFSLIAL 379 (380)
Q Consensus 359 -----~Ld~aLlrRF~~~I~~plPd~ 379 (380)
.+++++++||+..++|+.|+.
T Consensus 181 ~~~~~~~~~~l~~R~~~~i~~~~~~~ 206 (309)
T 3syl_A 181 MENFFQSNPGFRSRIAHHIEFPDYSD 206 (309)
T ss_dssp HHHHHHHSTTHHHHEEEEEEECCCCH
T ss_pred HHHHHhhCHHHHHhCCeEEEcCCcCH
Confidence 256899999999999999874
No 32
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=99.70 E-value=5.5e-18 Score=172.24 Aligned_cols=159 Identities=21% Similarity=0.237 Sum_probs=81.4
Q ss_pred ccccchHHHHHHHHHHHhccccCccccccc--CCCCceEEEEcCCCCcHHHHHHHHHHhcCCeEEEEecchhhh-hhccc
Q 016911 209 ESIKGLENAKRLLKEAVVMPIKYPKYFTGL--LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVS-KWRGD 285 (380)
Q Consensus 209 ~~l~Gl~~~k~~L~~~l~~~l~~~~~~~~~--~~~~~~vLL~GppGtGKT~la~ala~~l~~~~v~v~~s~l~~-~~~ge 285 (380)
+.|+|++++++.+...+..+.+....+... ..+++++||+||||||||++|+++|..++.+++.++++.+.. .|+|.
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~~~~~~v~~~~~~~~g~vG~ 94 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGK 94 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGGC----CCC
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcCCCceeecchhhcccceeec
Confidence 478999999999988876655544443333 135689999999999999999999999999999999999887 58885
Q ss_pred -hHHHHHHHHHHHHhcCCeEEEEcCcchhhhhccccchhhHHHHHHHHHHHHHhcCCccCCCcEEEEEE-eCCCCCchHH
Q 016911 286 -SEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAA-TNLPWELDAA 363 (380)
Q Consensus 286 -~e~~l~~lf~~A~~~~p~ILfIDEiD~l~~~~~~~~~~~~~~~~i~~~Ll~~ldgl~~~~~~VlVIat-TN~~~~Ld~a 363 (380)
.+..++.+|..+.. ++++||++.+.... .....+++++.|+..||++..... + +++ ||+++.+|++
T Consensus 95 d~e~~lr~lf~~a~~----~~~~De~d~~~~~~-----~~~~e~rvl~~LL~~~dg~~~~~~-v--~a~~TN~~~~ld~a 162 (444)
T 1g41_A 95 EVDSIIRDLTDSAMK----LVRQQEIAKNRARA-----EDVAEERILDALLPPAKNQWGEVE-N--HDSHSSTRQAFRKK 162 (444)
T ss_dssp CTHHHHHHHHHHHHH----HHHHHHHHSCC--------------------------------------------------
T ss_pred cHHHHHHHHHHHHHh----cchhhhhhhhhccc-----hhhHHHHHHHHHHHHhhccccccc-c--ccccccCHHHHHHH
Confidence 89999999998875 34588888764322 233457899999999999865433 2 555 9999999999
Q ss_pred HHh--cccceeEecCCCC
Q 016911 364 MLR--RLEKRVSFSLIAL 379 (380)
Q Consensus 364 Llr--RF~~~I~~plPd~ 379 (380)
|++ ||++.|++++|+.
T Consensus 163 L~rggr~D~~i~i~lP~~ 180 (444)
T 1g41_A 163 LREGQLDDKEIEIDVSAG 180 (444)
T ss_dssp ------------------
T ss_pred HHcCCCcceEEEEcCCCC
Confidence 998 9999999999985
No 33
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=99.69 E-value=6.3e-17 Score=153.86 Aligned_cols=169 Identities=24% Similarity=0.363 Sum_probs=116.1
Q ss_pred ccccchHHHHHHHHHHHhccccCccccccc--CCCCceEEEEcCCCCcHHHHHHHHHHhcCCeEEEEecchhhh-hhccc
Q 016911 209 ESIKGLENAKRLLKEAVVMPIKYPKYFTGL--LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVS-KWRGD 285 (380)
Q Consensus 209 ~~l~Gl~~~k~~L~~~l~~~l~~~~~~~~~--~~~~~~vLL~GppGtGKT~la~ala~~l~~~~v~v~~s~l~~-~~~ge 285 (380)
+.++|++++++.+...+..+.......... ..++.++||+||||||||++|+++|+.++.+++.++++.+.. .+.+.
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~i~~~~~~~~~~~~~ 94 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGK 94 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGGSSCCSGGG
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEcchhcccCCccCc
Confidence 468999999999987765532222111111 235679999999999999999999999999999999998765 44443
Q ss_pred -hHHHHHHHHHHH-----HhcCCeEEEEcCcchhhhhccccchhhHHHHHHHHHHHHHhcCCcc-------CCCcEEEEE
Q 016911 286 -SEKLIKVLFELA-----RHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQ-------SDELVFVLA 352 (380)
Q Consensus 286 -~e~~l~~lf~~A-----~~~~p~ILfIDEiD~l~~~~~~~~~~~~~~~~i~~~Ll~~ldgl~~-------~~~~VlVIa 352 (380)
....++.++..+ ....++||||||+|.+........ .......+.+.|+..+++... ....+++|+
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~-~~~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~i~ 173 (310)
T 1ofh_A 95 EVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKGEYSG-ADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIA 173 (310)
T ss_dssp STTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGGSCCSSCCS-SHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEE
T ss_pred cHHHHHHHHHHHhhHHHhhccCCCEEEEEChhhcCccccccc-cchhHHHHHHHHHHHhcCCeEecccccccCCcEEEEE
Confidence 234455555422 112257999999999977653221 122233456677777765321 223577888
Q ss_pred Ee----CCCCCchHHHHhcccceeEecCCC
Q 016911 353 AT----NLPWELDAAMLRRLEKRVSFSLIA 378 (380)
Q Consensus 353 tT----N~~~~Ld~aLlrRF~~~I~~plPd 378 (380)
++ +.+..+++++++||+..++|+.|+
T Consensus 174 ~~~~~~~~~~~l~~~l~~R~~~~i~~~~~~ 203 (310)
T 1ofh_A 174 SGAFQVARPSDLIPELQGRLPIRVELTALS 203 (310)
T ss_dssp EECCSSSCGGGSCHHHHHTCCEEEECCCCC
T ss_pred cCCcccCCcccCCHHHHhhCCceEEcCCcC
Confidence 84 566779999999999888988886
No 34
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=99.69 E-value=8.8e-17 Score=158.37 Aligned_cols=131 Identities=26% Similarity=0.414 Sum_probs=93.0
Q ss_pred cccchHHHHHHHHHHHhccccCccc---ccccCCCCceEEEEcCCCCcHHHHHHHHHHhcCCeEEEEecchhhhh-hccc
Q 016911 210 SIKGLENAKRLLKEAVVMPIKYPKY---FTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSK-WRGD 285 (380)
Q Consensus 210 ~l~Gl~~~k~~L~~~l~~~l~~~~~---~~~~~~~~~~vLL~GppGtGKT~la~ala~~l~~~~v~v~~s~l~~~-~~ge 285 (380)
.++|++.+++.+...+......... ......++.++||+||||||||++|+++|+.++.+++.++|+++... +.|.
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~~~~~~~~~~~l~~~~~~g~ 95 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGE 95 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHTTCHHHHH
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEechHHhcccccccc
Confidence 4799999999998877433222111 11223467899999999999999999999999999999999988743 6665
Q ss_pred h-HHHHHHHHHHH----HhcCCeEEEEcCcchhhhhccccchh-hHHHHHHHHHHHHHhcC
Q 016911 286 S-EKLIKVLFELA----RHHAPSTIFLDEIDAIISQRGEARSE-HEASRRLKTELLIQMDG 340 (380)
Q Consensus 286 ~-e~~l~~lf~~A----~~~~p~ILfIDEiD~l~~~~~~~~~~-~~~~~~i~~~Ll~~ldg 340 (380)
. ...+..++..+ ....++||||||+|.+.+.+...... ....+.+++.|+..|++
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~~~~~~Ll~~leg 156 (363)
T 3hws_A 96 DVENIIQKLLQKCDYDVQKAQRGIVYIDQIDKISRKSDNPSITRDVSGEGVQQALLKLIEG 156 (363)
T ss_dssp HHTHHHHHHHHHTTTCHHHHHHCEEEEECHHHHCCCSSCC---CHHHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHhhhhHHhcCCcEEEEeChhhhcccccccccccccchHHHHHHHHHHhcC
Confidence 4 45566666554 23347899999999998765443222 22234578888888874
No 35
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=99.69 E-value=4.3e-17 Score=153.91 Aligned_cols=135 Identities=21% Similarity=0.311 Sum_probs=100.8
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHhcCCeEEEEecchhhhh-hccchHHHHHHHHHHHHhcCCeEEEEcCcchhhhhcc
Q 016911 240 SPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSK-WRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRG 318 (380)
Q Consensus 240 ~~~~~vLL~GppGtGKT~la~ala~~l~~~~v~v~~s~l~~~-~~ge~e~~l~~lf~~A~~~~p~ILfIDEiD~l~~~~~ 318 (380)
.++.++||+||||||||++|+++|+.++.+++.+++++.... ..+.....++.+|..+....+++|||||+|.+.+.+.
T Consensus 62 ~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~ 141 (272)
T 1d2n_A 62 TPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPDKMIGFSETAKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVP 141 (272)
T ss_dssp CSEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEEECGGGCTTCCHHHHHHHHHHHHHHHHTSSEEEEEECCHHHHTTCBT
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHhCCCEEEEeCHHHhcCCchHHHHHHHHHHHHHHHhcCCcEEEEEChhhhhccCC
Confidence 556899999999999999999999999999999988753211 1122235667788888777789999999999966543
Q ss_pred ccchhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCCCCCchH-HHHhcccceeEecCC
Q 016911 319 EARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDA-AMLRRLEKRVSFSLI 377 (380)
Q Consensus 319 ~~~~~~~~~~~i~~~Ll~~ldgl~~~~~~VlVIatTN~~~~Ld~-aLlrRF~~~I~~plP 377 (380)
.... ....+++.|...+++.......++||+|||.++.+++ .+.+||...+.+|.+
T Consensus 142 ~~~~---~~~~~l~~L~~~~~~~~~~~~~~~ii~ttn~~~~l~~~~l~~rf~~~i~~p~l 198 (272)
T 1d2n_A 142 IGPR---FSNLVLQALLVLLKKAPPQGRKLLIIGTTSRKDVLQEMEMLNAFSTTIHVPNI 198 (272)
T ss_dssp TTTB---CCHHHHHHHHHHTTCCCSTTCEEEEEEEESCHHHHHHTTCTTTSSEEEECCCE
T ss_pred CChh---HHHHHHHHHHHHhcCccCCCCCEEEEEecCChhhcchhhhhcccceEEcCCCc
Confidence 1111 1234556666777766556667889999999988887 678899887776543
No 36
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=99.68 E-value=6.3e-17 Score=141.52 Aligned_cols=152 Identities=20% Similarity=0.321 Sum_probs=107.9
Q ss_pred CCccccccchHHHHHHHHHHHhccccCcccccccCCCCceEEEEcCCCCcHHHHHHHHHHhc----------CCeEEEEe
Q 016911 205 DVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC----------KTTFFNIS 274 (380)
Q Consensus 205 ~~~~~~l~Gl~~~k~~L~~~l~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~l----------~~~~v~v~ 274 (380)
...+++++|.++.++.+.+.+.. ....+++|+||||||||++|+++++.+ +.+++.++
T Consensus 18 ~~~~~~~~g~~~~~~~l~~~l~~------------~~~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (187)
T 2p65_A 18 AGKLDPVIGRDTEIRRAIQILSR------------RTKNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLVSLD 85 (187)
T ss_dssp TTCSCCCCSCHHHHHHHHHHHTS------------SSSCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEEEEEC
T ss_pred ccccchhhcchHHHHHHHHHHhC------------CCCCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeEEEEe
Confidence 44688999999988888876532 234689999999999999999999987 77888898
Q ss_pred cchhhhh--hccchHHHHHHHHHHHHhc-CCeEEEEcCcchhhhhccccchhhHHHHHHHHHHHHHhcCCccCCCcEEEE
Q 016911 275 ASSVVSK--WRGDSEKLIKVLFELARHH-APSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVL 351 (380)
Q Consensus 275 ~s~l~~~--~~ge~e~~l~~lf~~A~~~-~p~ILfIDEiD~l~~~~~~~~~~~~~~~~i~~~Ll~~ldgl~~~~~~VlVI 351 (380)
+..+... +.+.....+..++..+... .+.+|+|||+|.+.+.+........ +.+.+...++ ...+.+|
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~~~~----~~~~l~~~~~-----~~~~~ii 156 (187)
T 2p65_A 86 LSSLIAGAKYRGDFEERLKSILKEVQDAEGQVVMFIDEIHTVVGAGAVAEGALD----AGNILKPMLA-----RGELRCI 156 (187)
T ss_dssp HHHHHHHCCSHHHHHHHHHHHHHHHHHTTTSEEEEETTGGGGSSSSSSCTTSCC----THHHHHHHHH-----TTCSCEE
T ss_pred HHHhhcCCCchhHHHHHHHHHHHHHHhcCCceEEEEeCHHHhcccccccccchH----HHHHHHHHHh-----cCCeeEE
Confidence 8777532 3445555666777666554 5789999999999744321111111 1222333332 2346688
Q ss_pred EEeCCCC-----CchHHHHhcccceeEecCCC
Q 016911 352 AATNLPW-----ELDAAMLRRLEKRVSFSLIA 378 (380)
Q Consensus 352 atTN~~~-----~Ld~aLlrRF~~~I~~plPd 378 (380)
++||.+. .+++++++||.. ++++.|+
T Consensus 157 ~~~~~~~~~~~~~~~~~l~~R~~~-i~i~~p~ 187 (187)
T 2p65_A 157 GATTVSEYRQFIEKDKALERRFQQ-ILVEQPS 187 (187)
T ss_dssp EEECHHHHHHHTTTCHHHHHHEEE-EECCSCC
T ss_pred EecCHHHHHHHHhccHHHHHhcCc-ccCCCCC
Confidence 8888765 589999999985 8999886
No 37
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=99.66 E-value=2.4e-16 Score=137.65 Aligned_cols=152 Identities=20% Similarity=0.311 Sum_probs=106.5
Q ss_pred CCccccccchHHHHHHHHHHHhccccCcccccccCCCCceEEEEcCCCCcHHHHHHHHHHhc----------CCeEEEEe
Q 016911 205 DVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC----------KTTFFNIS 274 (380)
Q Consensus 205 ~~~~~~l~Gl~~~k~~L~~~l~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~l----------~~~~v~v~ 274 (380)
...+++++|.++.++.+.+.+.. ..+.+++|+||||||||++++++++.+ +.+++.++
T Consensus 18 ~~~~~~~~g~~~~~~~l~~~l~~------------~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (195)
T 1jbk_A 18 QGKLDPVIGRDEEIRRTIQVLQR------------RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALD 85 (195)
T ss_dssp TTCSCCCCSCHHHHHHHHHHHTS------------SSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEEC
T ss_pred hccccccccchHHHHHHHHHHhc------------CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEee
Confidence 44688999999988888876532 234789999999999999999999986 67889999
Q ss_pred cchhhh--hhccchHHHHHHHHHHHH-hcCCeEEEEcCcchhhhhccccchhhHHHHHHHHHHHHHhcCCccCCCcEEEE
Q 016911 275 ASSVVS--KWRGDSEKLIKVLFELAR-HHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVL 351 (380)
Q Consensus 275 ~s~l~~--~~~ge~e~~l~~lf~~A~-~~~p~ILfIDEiD~l~~~~~~~~~~~~~~~~i~~~Ll~~ldgl~~~~~~VlVI 351 (380)
+..+.. .+.+.....++.++..+. ...+.||+|||+|.+........ ... +.+.+...++ ...+.+|
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~-~~~----~~~~l~~~~~-----~~~~~~i 155 (195)
T 1jbk_A 86 MGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADG-AMD----AGNMLKPALA-----RGELHCV 155 (195)
T ss_dssp HHHHHTTTCSHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT-------CCC----CHHHHHHHHH-----TTSCCEE
T ss_pred HHHHhccCCccccHHHHHHHHHHHHhhcCCCeEEEEeCHHHHhccCcccc-hHH----HHHHHHHhhc-----cCCeEEE
Confidence 887762 344555666677776553 34578999999999975432110 011 1112222221 2346678
Q ss_pred EEeCCCC-----CchHHHHhcccceeEecCCCC
Q 016911 352 AATNLPW-----ELDAAMLRRLEKRVSFSLIAL 379 (380)
Q Consensus 352 atTN~~~-----~Ld~aLlrRF~~~I~~plPd~ 379 (380)
++||.+. .+++++++||. .++++.|+.
T Consensus 156 ~~~~~~~~~~~~~~~~~l~~r~~-~i~~~~p~~ 187 (195)
T 1jbk_A 156 GATTLDEYRQYIEKDAALERRFQ-KVFVAEPSV 187 (195)
T ss_dssp EEECHHHHHHHTTTCHHHHTTEE-EEECCCCCH
T ss_pred EeCCHHHHHHHHhcCHHHHHHhc-eeecCCCCH
Confidence 8888876 68999999998 588988874
No 38
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=99.65 E-value=1.2e-16 Score=166.32 Aligned_cols=155 Identities=26% Similarity=0.261 Sum_probs=105.9
Q ss_pred cccccchHHHHHHHHHHHhccccCcccccccCCCCceEEEEcCCCCcHHHHHHHHHHhcCCeEEEEecchhhh-------
Q 016911 208 WESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVS------- 280 (380)
Q Consensus 208 ~~~l~Gl~~~k~~L~~~l~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~l~~~~v~v~~s~l~~------- 280 (380)
.+++.|++++++.+.+.+.......+ .++.+++|+||||||||++|+++|..++.++..+++..+..
T Consensus 80 ~~di~G~~~vk~~i~~~~~l~~~~~~------~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~~~~~~~~g~ 153 (543)
T 3m6a_A 80 DEEHHGLEKVKERILEYLAVQKLTKS------LKGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESEIRGH 153 (543)
T ss_dssp HHHCSSCHHHHHHHHHHHHHHHHSSS------CCSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC----------
T ss_pred HHHhccHHHHHHHHHHHHHHHHhccc------CCCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecccchhhhhhhH
Confidence 56799999999988765543221111 15678999999999999999999999999999999876543
Q ss_pred --hhccchHHHHHHHHHHHHhcCCeEEEEcCcchhhhhccccchhhHHHHHHHHHHHHHhcCCccC------------CC
Q 016911 281 --KWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQS------------DE 346 (380)
Q Consensus 281 --~~~ge~e~~l~~lf~~A~~~~p~ILfIDEiD~l~~~~~~~~~~~~~~~~i~~~Ll~~ldgl~~~------------~~ 346 (380)
.++|.....+...|..+....| ||||||+|.+....+. ...+.|+..++..... ..
T Consensus 154 ~~~~ig~~~~~~~~~~~~a~~~~~-vl~lDEid~l~~~~~~---------~~~~~LL~~ld~~~~~~~~~~~~~~~~~~~ 223 (543)
T 3m6a_A 154 RRTYVGAMPGRIIQGMKKAGKLNP-VFLLDEIDKMSSDFRG---------DPSSAMLEVLDPEQNSSFSDHYIEETFDLS 223 (543)
T ss_dssp ----------CHHHHHHTTCSSSE-EEEEEESSSCC------------------CCGGGTCTTTTTBCCCSSSCCCCBCS
T ss_pred HHHHhccCchHHHHHHHHhhccCC-EEEEhhhhhhhhhhcc---------CHHHHHHHHHhhhhcceeecccCCeeeccc
Confidence 4556666666667777765555 9999999999765321 1334566666543211 14
Q ss_pred cEEEEEEeCCCCCchHHHHhcccceeEecCCCC
Q 016911 347 LVFVLAATNLPWELDAAMLRRLEKRVSFSLIAL 379 (380)
Q Consensus 347 ~VlVIatTN~~~~Ld~aLlrRF~~~I~~plPd~ 379 (380)
+++||+|||.++.++++|++||+ .++|+.|+.
T Consensus 224 ~v~iI~ttN~~~~l~~aL~~R~~-vi~~~~~~~ 255 (543)
T 3m6a_A 224 KVLFIATANNLATIPGPLRDRME-IINIAGYTE 255 (543)
T ss_dssp SCEEEEECSSTTTSCHHHHHHEE-EEECCCCCH
T ss_pred ceEEEeccCccccCCHHHHhhcc-eeeeCCCCH
Confidence 57899999999999999999995 688888863
No 39
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=99.64 E-value=1.9e-15 Score=146.48 Aligned_cols=149 Identities=18% Similarity=0.210 Sum_probs=108.7
Q ss_pred CCCCccccccchHHHHHHHHHHHhccccCcccccccCCCCceEEEEcCCCCcHHHHHHHHHHhcCCeEEEEecchhhhhh
Q 016911 203 SPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKW 282 (380)
Q Consensus 203 ~p~~~~~~l~Gl~~~k~~L~~~l~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~l~~~~v~v~~s~l~~~~ 282 (380)
.+...|++++|.+..++.+...+..... ...+..++||+||||||||++|+++|+.++.+++.++++.+.
T Consensus 23 ~~p~~~~~iiG~~~~~~~l~~~l~~~~~-------~~~~~~~vll~G~~GtGKT~la~~ia~~~~~~~~~~~~~~~~--- 92 (338)
T 3pfi_A 23 LRPSNFDGYIGQESIKKNLNVFIAAAKK-------RNECLDHILFSGPAGLGKTTLANIISYEMSANIKTTAAPMIE--- 92 (338)
T ss_dssp CCCCSGGGCCSCHHHHHHHHHHHHHHHH-------TTSCCCCEEEECSTTSSHHHHHHHHHHHTTCCEEEEEGGGCC---
T ss_pred cCCCCHHHhCChHHHHHHHHHHHHHHHh-------cCCCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEecchhcc---
Confidence 3445799999999999999887654321 123457899999999999999999999999999999987653
Q ss_pred ccchHHHHHHHHHHHHhcCCeEEEEcCcchhhhhccccchhhHHHHHHHHHHHHHhcCCc---------------cCCCc
Q 016911 283 RGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT---------------QSDEL 347 (380)
Q Consensus 283 ~ge~e~~l~~lf~~A~~~~p~ILfIDEiD~l~~~~~~~~~~~~~~~~i~~~Ll~~ldgl~---------------~~~~~ 347 (380)
....+...+.. ...+++|||||++.+... ....|+..++... .....
T Consensus 93 ---~~~~~~~~~~~--~~~~~vl~lDEi~~l~~~-------------~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~ 154 (338)
T 3pfi_A 93 ---KSGDLAAILTN--LSEGDILFIDEIHRLSPA-------------IEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPK 154 (338)
T ss_dssp ---SHHHHHHHHHT--CCTTCEEEEETGGGCCHH-------------HHHHHHHHHHTSCC---------CCCCCCCCCC
T ss_pred ---chhHHHHHHHh--ccCCCEEEEechhhcCHH-------------HHHHHHHHHHhccchhhcccCccccceecCCCC
Confidence 12222333322 345789999999988532 2333444443321 11124
Q ss_pred EEEEEEeCCCCCchHHHHhcccceeEecCCCC
Q 016911 348 VFVLAATNLPWELDAAMLRRLEKRVSFSLIAL 379 (380)
Q Consensus 348 VlVIatTN~~~~Ld~aLlrRF~~~I~~plPd~ 379 (380)
+.+|++||....+++++++||+..+.++.|+.
T Consensus 155 ~~~i~atn~~~~l~~~L~~R~~~~i~l~~~~~ 186 (338)
T 3pfi_A 155 FTLIGATTRAGMLSNPLRDRFGMQFRLEFYKD 186 (338)
T ss_dssp CEEEEEESCGGGSCHHHHTTCSEEEECCCCCH
T ss_pred eEEEEeCCCccccCHHHHhhcCEEeeCCCcCH
Confidence 78999999999999999999998999998863
No 40
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=99.59 E-value=3.3e-15 Score=147.63 Aligned_cols=160 Identities=22% Similarity=0.324 Sum_probs=99.9
Q ss_pred ccccchHHHHHHHHHHHhccccCccc------------------ccccCCCCceEEEEcCCCCcHHHHHHHHHHhcCCeE
Q 016911 209 ESIKGLENAKRLLKEAVVMPIKYPKY------------------FTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTF 270 (380)
Q Consensus 209 ~~l~Gl~~~k~~L~~~l~~~l~~~~~------------------~~~~~~~~~~vLL~GppGtGKT~la~ala~~l~~~~ 270 (380)
+.++|++.+++.+...+.......+. ......+..++||+||||||||++|+++|+.++.++
T Consensus 21 ~~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l~~~~ 100 (376)
T 1um8_A 21 NYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHLDIPI 100 (376)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCE
T ss_pred hHccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHHHhCCCE
Confidence 35789999999998776432221110 112334667899999999999999999999999999
Q ss_pred EEEecchhh-hhhccch-HHHHHHHHHHHH----hcCCeEEEEcCcchhhhhccccchh-hHHHHHHHHHHHHHhcCCc-
Q 016911 271 FNISASSVV-SKWRGDS-EKLIKVLFELAR----HHAPSTIFLDEIDAIISQRGEARSE-HEASRRLKTELLIQMDGLT- 342 (380)
Q Consensus 271 v~v~~s~l~-~~~~ge~-e~~l~~lf~~A~----~~~p~ILfIDEiD~l~~~~~~~~~~-~~~~~~i~~~Ll~~ldgl~- 342 (380)
+.++++.+. ..+.|.. +..+..++..+. ...++||||||+|.+...+...... +.....+++.|+..+++..
T Consensus 101 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~~~Ll~~le~~~~ 180 (376)
T 1um8_A 101 AISDATSLTEAGYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLV 180 (376)
T ss_dssp EEEEGGGCC--------CTHHHHHHHHHTTTCHHHHTTSEEEEETGGGC--------------CHHHHHHHHHHHHCCEE
T ss_pred EEecchhhhhcCcCCccHHHHHHHHHhhccchhhhcCCeEEEEcCHHHHhhhcCCCceecccchHHHHHHHHHHhhccce
Confidence 999998875 3444442 344444444321 2357899999999997653221111 1111235667777776431
Q ss_pred -----------------cCCCcEEEEEEeCCCCCchHHHHhccc
Q 016911 343 -----------------QSDELVFVLAATNLPWELDAAMLRRLE 369 (380)
Q Consensus 343 -----------------~~~~~VlVIatTN~~~~Ld~aLlrRF~ 369 (380)
-...++++|+++| .+.+++++.+||.
T Consensus 181 ~~~~~~~~~~~~~~~~~i~t~n~~~I~~~~-~~~l~~~l~~R~~ 223 (376)
T 1um8_A 181 NIPPKGGRKHPEGNFIQIDTSDILFICAGA-FDGLAEIIKKRTT 223 (376)
T ss_dssp C---------------CEECTTCEEEEEEC-CTTHHHHTTTSCS
T ss_pred ecccccccccCCcceEEEecCCeEEEecCC-HHHHHHHHHHHhc
Confidence 1124467888888 6789999999996
No 41
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=99.57 E-value=1.2e-14 Score=142.19 Aligned_cols=151 Identities=22% Similarity=0.265 Sum_probs=99.1
Q ss_pred CCCccccccchHHHHHHHHHHHhccccCcccccccCCCCceEEEEcCCCCcHHHHHHHHHHhcCC--eEEEEecchhhhh
Q 016911 204 PDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKT--TFFNISASSVVSK 281 (380)
Q Consensus 204 p~~~~~~l~Gl~~~k~~L~~~l~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~l~~--~~v~v~~s~l~~~ 281 (380)
|...|++++|.+..++.+....... .....++.++||+||||||||++|+++|+.++. +++.+++..+...
T Consensus 39 p~~~~~~ivG~~~~~~~l~~l~~~~-------~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~ 111 (368)
T 3uk6_A 39 PRQASQGMVGQLAARRAAGVVLEMI-------REGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIFSL 111 (368)
T ss_dssp BCSEETTEESCHHHHHHHHHHHHHH-------HTTCCTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEGGGGSCS
T ss_pred cCcchhhccChHHHHHHHHHHHHHH-------HcCCCCCCEEEEECCCCCCHHHHHHHHHHHhcccCCcccccchhhhhc
Confidence 4555999999999988766543221 112245679999999999999999999999964 7888887664332
Q ss_pred hc-------------------------------------------------cchHHHHHHHHHHHHh-----c----CCe
Q 016911 282 WR-------------------------------------------------GDSEKLIKVLFELARH-----H----APS 303 (380)
Q Consensus 282 ~~-------------------------------------------------ge~e~~l~~lf~~A~~-----~----~p~ 303 (380)
+. ++....++..+..+.. . .|+
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 191 (368)
T 3uk6_A 112 EMSKTEALTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPG 191 (368)
T ss_dssp SSCHHHHHHHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBC
T ss_pred ccchhHHHHHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCc
Confidence 21 1112333444433322 1 157
Q ss_pred EEEEcCcchhhhhccccchhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEe-----------CCCCCchHHHHhccccee
Q 016911 304 TIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAAT-----------NLPWELDAAMLRRLEKRV 372 (380)
Q Consensus 304 ILfIDEiD~l~~~~~~~~~~~~~~~~i~~~Ll~~ldgl~~~~~~VlVIatT-----------N~~~~Ld~aLlrRF~~~I 372 (380)
||||||+|.+.. ...+.|+..++. ....++++++. |.+..+++++++||.. +
T Consensus 192 vl~IDEi~~l~~-------------~~~~~L~~~le~---~~~~~~ii~t~~~~~~i~~t~~~~~~~l~~~l~sR~~~-i 254 (368)
T 3uk6_A 192 VLFIDEVHMLDI-------------ESFSFLNRALES---DMAPVLIMATNRGITRIRGTSYQSPHGIPIDLLDRLLI-V 254 (368)
T ss_dssp EEEEESGGGSBH-------------HHHHHHHHHTTC---TTCCEEEEEESCSEEECBTSSCEEETTCCHHHHTTEEE-E
T ss_pred eEEEhhccccCh-------------HHHHHHHHHhhC---cCCCeeeeecccceeeeeccCCCCcccCCHHHHhhccE-E
Confidence 999999998843 234456666543 23345555443 3467899999999976 7
Q ss_pred EecCCC
Q 016911 373 SFSLIA 378 (380)
Q Consensus 373 ~~plPd 378 (380)
.|+.|+
T Consensus 255 ~~~~~~ 260 (368)
T 3uk6_A 255 STTPYS 260 (368)
T ss_dssp EECCCC
T ss_pred EecCCC
Confidence 888876
No 42
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=99.55 E-value=1.7e-14 Score=139.11 Aligned_cols=141 Identities=17% Similarity=0.114 Sum_probs=103.5
Q ss_pred CCCCccccccchHHHHHHHHHHHhccccCcccccccCCCCceEEEEcCCCCcHHHHHHHHHHhcCCeEEEEecchhhhhh
Q 016911 203 SPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKW 282 (380)
Q Consensus 203 ~p~~~~~~l~Gl~~~k~~L~~~l~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~l~~~~v~v~~s~l~~~~ 282 (380)
.+..++++++|.+..++.+...+.. ...+..+|++||||||||++++++|+.++.+++.+++++..
T Consensus 20 ~rP~~~~~ivg~~~~~~~l~~~l~~-----------~~~~~~~L~~G~~G~GKT~la~~la~~l~~~~~~i~~~~~~--- 85 (324)
T 3u61_B 20 YRPSTIDECILPAFDKETFKSITSK-----------GKIPHIILHSPSPGTGKTTVAKALCHDVNADMMFVNGSDCK--- 85 (324)
T ss_dssp SCCCSTTTSCCCHHHHHHHHHHHHT-----------TCCCSEEEECSSTTSSHHHHHHHHHHHTTEEEEEEETTTCC---
T ss_pred hCCCCHHHHhCcHHHHHHHHHHHHc-----------CCCCeEEEeeCcCCCCHHHHHHHHHHHhCCCEEEEcccccC---
Confidence 3456799999999999999887752 13445678889999999999999999999999999987642
Q ss_pred ccchHHHHHHHHHH-HHhc----CCeEEEEcCcchhh-hhccccchhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCC
Q 016911 283 RGDSEKLIKVLFEL-ARHH----APSTIFLDEIDAII-SQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNL 356 (380)
Q Consensus 283 ~ge~e~~l~~lf~~-A~~~----~p~ILfIDEiD~l~-~~~~~~~~~~~~~~~i~~~Ll~~ldgl~~~~~~VlVIatTN~ 356 (380)
...++..+.. +... .+.||||||+|.+. .. ..+.|+..++.. ...+.+|++||.
T Consensus 86 ----~~~i~~~~~~~~~~~~~~~~~~vliiDEi~~l~~~~-------------~~~~L~~~le~~---~~~~~iI~~~n~ 145 (324)
T 3u61_B 86 ----IDFVRGPLTNFASAASFDGRQKVIVIDEFDRSGLAE-------------SQRHLRSFMEAY---SSNCSIIITANN 145 (324)
T ss_dssp ----HHHHHTHHHHHHHBCCCSSCEEEEEEESCCCGGGHH-------------HHHHHHHHHHHH---GGGCEEEEEESS
T ss_pred ----HHHHHHHHHHHHhhcccCCCCeEEEEECCcccCcHH-------------HHHHHHHHHHhC---CCCcEEEEEeCC
Confidence 2233333332 3221 46899999999985 21 223344444322 234678899999
Q ss_pred CCCchHHHHhcccceeEecCCC
Q 016911 357 PWELDAAMLRRLEKRVSFSLIA 378 (380)
Q Consensus 357 ~~~Ld~aLlrRF~~~I~~plPd 378 (380)
+..+++++++||. .+.|+.|+
T Consensus 146 ~~~l~~~l~sR~~-~i~~~~~~ 166 (324)
T 3u61_B 146 IDGIIKPLQSRCR-VITFGQPT 166 (324)
T ss_dssp GGGSCTTHHHHSE-EEECCCCC
T ss_pred ccccCHHHHhhCc-EEEeCCCC
Confidence 9999999999995 68998887
No 43
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.54 E-value=1.5e-14 Score=138.72 Aligned_cols=149 Identities=22% Similarity=0.286 Sum_probs=104.6
Q ss_pred CCCccccccchHHHHHHHHHHHhccccCcccccccCCCCceEEEEcCCCCcHHHHHHHHHHhcCCeEEEEecchhhhhhc
Q 016911 204 PDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWR 283 (380)
Q Consensus 204 p~~~~~~l~Gl~~~k~~L~~~l~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~l~~~~v~v~~s~l~~~~~ 283 (380)
+...|++++|.+..++.+...+..... ...++.+++|+||||||||++|+++++.++.+++.++++.+..
T Consensus 7 ~p~~~~~~ig~~~~~~~l~~~l~~~~~-------~~~~~~~vll~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~--- 76 (324)
T 1hqc_A 7 RPKTLDEYIGQERLKQKLRVYLEAAKA-------RKEPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEK--- 76 (324)
T ss_dssp CCCSTTTCCSCHHHHHHHHHHHHHHHH-------HCSCCCCCEEECCTTCCCHHHHHHHHHHHTCCEEEECTTTCCS---
T ss_pred CcccHHHhhCHHHHHHHHHHHHHHHHc-------cCCCCCcEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccccCC---
Confidence 445789999999999988877643211 1134578999999999999999999999999999999876532
Q ss_pred cchHHHHHHHHHHHHhcCCeEEEEcCcchhhhhccccchhhHHHHHHHHHHHHHhcCCc---------------cCCCcE
Q 016911 284 GDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT---------------QSDELV 348 (380)
Q Consensus 284 ge~e~~l~~lf~~A~~~~p~ILfIDEiD~l~~~~~~~~~~~~~~~~i~~~Ll~~ldgl~---------------~~~~~V 348 (380)
...+...+..+ ...+++|||||++.+.... ...|+..++... ....++
T Consensus 77 ---~~~l~~~l~~~-~~~~~~l~lDEi~~l~~~~-------------~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~ 139 (324)
T 1hqc_A 77 ---PGDLAAILANS-LEEGDILFIDEIHRLSRQA-------------EEHLYPAMEDFVMDIVIGQGPAARTIRLELPRF 139 (324)
T ss_dssp ---HHHHHHHHTTT-CCTTCEEEETTTTSCCHHH-------------HHHHHHHHHHSEEEECCSSSSSCCCEEEECCCC
T ss_pred ---hHHHHHHHHHh-ccCCCEEEEECCcccccch-------------HHHHHHHHHhhhhHHhccccccccccccCCCCE
Confidence 12222222210 2457899999999885321 122333332211 011247
Q ss_pred EEEEEeCCCCCchHHHHhcccceeEecCCCC
Q 016911 349 FVLAATNLPWELDAAMLRRLEKRVSFSLIAL 379 (380)
Q Consensus 349 lVIatTN~~~~Ld~aLlrRF~~~I~~plPd~ 379 (380)
.+|++||.+..+++++.+||...+.++.|+.
T Consensus 140 ~~i~~t~~~~~~~~~l~~R~~~~i~l~~~~~ 170 (324)
T 1hqc_A 140 TLIGATTRPGLITAPLLSRFGIVEHLEYYTP 170 (324)
T ss_dssp EEEEEESCCSSCSCSTTTTCSCEEECCCCCH
T ss_pred EEEEeCCCcccCCHHHHhcccEEEecCCCCH
Confidence 7999999999999999999988899988863
No 44
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=99.54 E-value=8.8e-15 Score=149.60 Aligned_cols=147 Identities=22% Similarity=0.333 Sum_probs=103.7
Q ss_pred ccchhhccCCCCccccccchHHHHHHHHHHHhccccCcccccccCCCCceEEEEcCCCCcHHHHHHHHHHhc--------
Q 016911 195 LCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC-------- 266 (380)
Q Consensus 195 ~~~~~~~~~p~~~~~~l~Gl~~~k~~L~~~l~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~l-------- 266 (380)
++.+.........+++++|.+..++.+...+.. ....++||+||||||||++|+++|..+
T Consensus 166 ~~~~l~~~~r~~~ld~iiGr~~~i~~l~~~l~r------------~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~ 233 (468)
T 3pxg_A 166 LARDLTAIAKEDSLDPVIGRSKEIQRVIEVLSR------------RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEI 233 (468)
T ss_dssp SCCBHHHHTTSSCSCCCCCCHHHHHHHHHHHHC------------SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTT
T ss_pred HHHHHHHHHhcCCCCCccCcHHHHHHHHHHHhc------------cCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChh
Confidence 344444445566789999999999988877643 234689999999999999999999986
Q ss_pred --CCeEEEEecchhhhhhccchHHHHHHHHHHHHhcCCeEEEEcCcchhhhhccccchhhHHHHHHHHHHHHHhcCCccC
Q 016911 267 --KTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQS 344 (380)
Q Consensus 267 --~~~~v~v~~s~l~~~~~ge~e~~l~~lf~~A~~~~p~ILfIDEiD~l~~~~~~~~~~~~~~~~i~~~Ll~~ldgl~~~ 344 (380)
+.+++.++++ ..+.|+.+..++.++..+....+.||||| .. ....+.|+..+ .
T Consensus 234 l~~~~~~~l~~~---~~~~g~~e~~~~~~~~~~~~~~~~iLfiD------~~-----------~~a~~~L~~~L-----~ 288 (468)
T 3pxg_A 234 LRDKRVMTLDMG---TKYRGEFEDRLKKVMDEIRQAGNIILFID------AA-----------IDASNILKPSL-----A 288 (468)
T ss_dssp TSSCCEECC-------------CTTHHHHHHHHHTCCCCEEEEC------C-------------------CCCT-----T
T ss_pred hcCCeEEEeeCC---ccccchHHHHHHHHHHHHHhcCCeEEEEe------Cc-----------hhHHHHHHHhh-----c
Confidence 7789988887 66778878888899999998888999999 10 01222333333 2
Q ss_pred CCcEEEEEEeCCCC-----CchHHHHhcccceeEecCCCC
Q 016911 345 DELVFVLAATNLPW-----ELDAAMLRRLEKRVSFSLIAL 379 (380)
Q Consensus 345 ~~~VlVIatTN~~~-----~Ld~aLlrRF~~~I~~plPd~ 379 (380)
.+.+.+|++||.++ .+++++++||. .+.|+.|+.
T Consensus 289 ~g~v~vI~at~~~e~~~~~~~~~al~~Rf~-~i~v~~p~~ 327 (468)
T 3pxg_A 289 RGELQCIGATTLDEYRKYIEKDAALERRFQ-PIQVDQPSV 327 (468)
T ss_dssp SSSCEEEEECCTTTTHHHHTTCSHHHHSEE-EEECCCCCH
T ss_pred CCCEEEEecCCHHHHHHHhhcCHHHHHhCc-cceeCCCCH
Confidence 34578999999987 68999999997 499999873
No 45
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=99.53 E-value=3.1e-14 Score=135.83 Aligned_cols=154 Identities=23% Similarity=0.300 Sum_probs=101.6
Q ss_pred ccccchHHHHHHHHHHHhccccCcccccccCCCCceEEEEcCCCCcHHHHHHHHHHhc---CCeEEEEecchhhhh----
Q 016911 209 ESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSK---- 281 (380)
Q Consensus 209 ~~l~Gl~~~k~~L~~~l~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~l---~~~~v~v~~s~l~~~---- 281 (380)
+.++|++.+++.+...+....... ....+|..+++|+||||||||++|+++|+.+ +.+++.++|+.+...
T Consensus 17 ~~i~G~~~~~~~l~~~i~~~~~~~---~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (311)
T 4fcw_A 17 KRVVGQDEAIRAVADAIRRARAGL---KDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAVS 93 (311)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTC---SCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGGCCSTTHHH
T ss_pred hhcCCHHHHHHHHHHHHHHHhcCC---CCCCCCceEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeecccccccccHH
Confidence 467899999998887765432110 1112455689999999999999999999988 567999999866432
Q ss_pred -hccchH-----HHHHHHHHHHHhcCCeEEEEcCcchhhhhccccchhhHHHHHHHHHHHHHhcCCcc--------CCCc
Q 016911 282 -WRGDSE-----KLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQ--------SDEL 347 (380)
Q Consensus 282 -~~ge~e-----~~l~~lf~~A~~~~p~ILfIDEiD~l~~~~~~~~~~~~~~~~i~~~Ll~~ldgl~~--------~~~~ 347 (380)
..|... .....+........++||||||+|.+.+. +.+.|+..++.... .-.+
T Consensus 94 ~l~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEi~~l~~~-------------~~~~Ll~~le~~~~~~~~~~~~~~~~ 160 (311)
T 4fcw_A 94 RLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDAIEKAHPD-------------VFNILLQMLDDGRLTDSHGRTVDFRN 160 (311)
T ss_dssp HHHCCCTTSTTTTTCCHHHHHHHHCSSEEEEEETGGGSCHH-------------HHHHHHHHHHHSEEECTTSCEEECTT
T ss_pred HhcCCCCccccccccchHHHHHHhCCCeEEEEeChhhcCHH-------------HHHHHHHHHhcCEEEcCCCCEEECCC
Confidence 111100 00012233334445689999999988432 34455555543221 1135
Q ss_pred EEEEEEeCC--------------------------CCCchHHHHhcccceeEecCCC
Q 016911 348 VFVLAATNL--------------------------PWELDAAMLRRLEKRVSFSLIA 378 (380)
Q Consensus 348 VlVIatTN~--------------------------~~~Ld~aLlrRF~~~I~~plPd 378 (380)
+++|+|||. ...+++++++||+..+.|+.|+
T Consensus 161 ~iiI~ttn~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~R~~~~~~~~p~~ 217 (311)
T 4fcw_A 161 TVIIMTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRPLT 217 (311)
T ss_dssp EEEEEEESTTHHHHHTTTTSCCCSSTHHHHTHHHHHHHSCHHHHTTCSEEEECCCCC
T ss_pred cEEEEecccCHHHHHhhhcccccHHHHHHHHHHHHHHhCCHHHHhcCCeEEEeCCCC
Confidence 779999998 3357889999999888888876
No 46
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=99.53 E-value=1.9e-14 Score=123.87 Aligned_cols=133 Identities=13% Similarity=0.156 Sum_probs=92.0
Q ss_pred cccchHHHHHHHHHHHhccccCcccccccCCCCceEEEEcCCCCcHHHHHHHHHHhc---CCeEEEEecchhhhhhccch
Q 016911 210 SIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKWRGDS 286 (380)
Q Consensus 210 ~l~Gl~~~k~~L~~~l~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~l---~~~~v~v~~s~l~~~~~ge~ 286 (380)
+++|.+..++.+.+.+... .....++||+||||||||++|++++... +.+++ ++|+.+...
T Consensus 2 ~iiG~s~~~~~~~~~~~~~----------a~~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~~~~~~~----- 65 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQL----------SETDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFV-YRELTPDNA----- 65 (145)
T ss_dssp --CCSSHHHHHHHHHHHHH----------TTCCSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCE-EEECCTTTS-----
T ss_pred CceeCCHHHHHHHHHHHHH----------hCCCCCEEEECCCCCCHHHHHHHHHHhCCccCCCEE-EECCCCCcc-----
Confidence 5778888888877765432 2345789999999999999999999987 77899 999887544
Q ss_pred HHHHHHHHHHHHhcCCeEEEEcCcchhhhhccccchhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCCCC-------C
Q 016911 287 EKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPW-------E 359 (380)
Q Consensus 287 e~~l~~lf~~A~~~~p~ILfIDEiD~l~~~~~~~~~~~~~~~~i~~~Ll~~ldgl~~~~~~VlVIatTN~~~-------~ 359 (380)
......+..+. +++|||||+|.+... ....|+..+. .....+.+|+|||.+- .
T Consensus 66 -~~~~~~~~~a~---~g~l~ldei~~l~~~-------------~q~~Ll~~l~---~~~~~~~~I~~t~~~~~~~~~~~~ 125 (145)
T 3n70_A 66 -PQLNDFIALAQ---GGTLVLSHPEHLTRE-------------QQYHLVQLQS---QEHRPFRLIGIGDTSLVELAASNH 125 (145)
T ss_dssp -SCHHHHHHHHT---TSCEEEECGGGSCHH-------------HHHHHHHHHH---SSSCSSCEEEEESSCHHHHHHHSC
T ss_pred -hhhhcHHHHcC---CcEEEEcChHHCCHH-------------HHHHHHHHHh---hcCCCEEEEEECCcCHHHHHHcCC
Confidence 12334455554 579999999998542 2234555552 2333466889999752 3
Q ss_pred chHHHHhcccceeEecCCCC
Q 016911 360 LDAAMLRRLEKRVSFSLIAL 379 (380)
Q Consensus 360 Ld~aLlrRF~~~I~~plPd~ 379 (380)
+.+.+..|+. .+.+.+|.+
T Consensus 126 ~~~~L~~rl~-~~~i~lPpL 144 (145)
T 3n70_A 126 IIAELYYCFA-MTQIACLPL 144 (145)
T ss_dssp CCHHHHHHHH-HHEEECCCC
T ss_pred CCHHHHHHhc-CCEEeCCCC
Confidence 5677777875 466777765
No 47
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=99.52 E-value=1.1e-14 Score=125.26 Aligned_cols=133 Identities=11% Similarity=0.102 Sum_probs=90.5
Q ss_pred cccchHHHHHHHHHHHhccccCcccccccCCCCceEEEEcCCCCcHHHHHHHHHHhcCCeEEEEecchhhhhhccchHHH
Q 016911 210 SIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKL 289 (380)
Q Consensus 210 ~l~Gl~~~k~~L~~~l~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~l~~~~v~v~~s~l~~~~~ge~e~~ 289 (380)
+++|.++.++.+.+.+.... ....+++|+||||||||++|++++.... +++.++|+.+...+
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~----------~~~~~vll~G~~GtGKt~lA~~i~~~~~-~~~~~~~~~~~~~~------- 66 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAA----------KRTSPVFLTGEAGSPFETVARYFHKNGT-PWVSPARVEYLIDM------- 66 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHH----------TCSSCEEEEEETTCCHHHHHGGGCCTTS-CEECCSSTTHHHHC-------
T ss_pred CceeCCHHHHHHHHHHHHHh----------CCCCcEEEECCCCccHHHHHHHHHHhCC-CeEEechhhCChHh-------
Confidence 57888888888887664322 3446899999999999999999999888 99999998876543
Q ss_pred HHHHHHHHHhcCCeEEEEcCcchhhhhccccchhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCCC-CC----chHHH
Q 016911 290 IKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLP-WE----LDAAM 364 (380)
Q Consensus 290 l~~lf~~A~~~~p~ILfIDEiD~l~~~~~~~~~~~~~~~~i~~~Ll~~ldgl~~~~~~VlVIatTN~~-~~----Ld~aL 364 (380)
....+..+. +++|||||+|.+.... ...|+..++.. ....+.+|+|||.+ .. +++.+
T Consensus 67 ~~~~~~~a~---~~~l~lDei~~l~~~~-------------q~~Ll~~l~~~--~~~~~~iI~~tn~~~~~~~~~~~~~L 128 (143)
T 3co5_A 67 PMELLQKAE---GGVLYVGDIAQYSRNI-------------QTGITFIIGKA--ERCRVRVIASCSYAAGSDGISCEEKL 128 (143)
T ss_dssp HHHHHHHTT---TSEEEEEECTTCCHHH-------------HHHHHHHHHHH--TTTTCEEEEEEEECTTTC--CHHHHH
T ss_pred hhhHHHhCC---CCeEEEeChHHCCHHH-------------HHHHHHHHHhC--CCCCEEEEEecCCCHHHHHhCccHHH
Confidence 344555554 5799999999985431 22233333321 13446788888865 22 56677
Q ss_pred HhcccceeEecCCCC
Q 016911 365 LRRLEKRVSFSLIAL 379 (380)
Q Consensus 365 lrRF~~~I~~plPd~ 379 (380)
..|+.. +.+.+|.+
T Consensus 129 ~~rl~~-~~i~lPpL 142 (143)
T 3co5_A 129 AGLFSE-SVVRIPPL 142 (143)
T ss_dssp HHHSSS-EEEEECCC
T ss_pred HHHhcC-cEEeCCCC
Confidence 778743 56667765
No 48
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.52 E-value=6.6e-14 Score=150.74 Aligned_cols=150 Identities=20% Similarity=0.261 Sum_probs=105.6
Q ss_pred ccccchHHHHHHHHHHHhccccCcccccccCCCCceEEEEcCCCCcHHHHHHHHHHhc---CCeEEEEecchhhhhhccc
Q 016911 209 ESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKWRGD 285 (380)
Q Consensus 209 ~~l~Gl~~~k~~L~~~l~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~l---~~~~v~v~~s~l~~~~~ge 285 (380)
+.++|++.+++.+...+....... ....+|..++||+||||||||++|+++|..+ +.+++.++|+++...+...
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~---~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~~~~~~~~ 567 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGL---KDPKRPIGSFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYMEKHSTS 567 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTC---SCTTSCSEEEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGGCSSCCCC
T ss_pred CcCcChHHHHHHHHHHHHHHHccc---CCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechhcccccccc
Confidence 578999999998887775432111 1112343479999999999999999999998 6799999999988766544
Q ss_pred hHHHHHHHHHHHHhcCCeEEEEcCcchhhhhccccchhhHHHHHHHHHHHHHhcCCc--------cCCCcEEEEEEeCCC
Q 016911 286 SEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT--------QSDELVFVLAATNLP 357 (380)
Q Consensus 286 ~e~~l~~lf~~A~~~~p~ILfIDEiD~l~~~~~~~~~~~~~~~~i~~~Ll~~ldgl~--------~~~~~VlVIatTN~~ 357 (380)
...+....+...++||||||+|.+.+ .+.+.|+..++.-. ....++++|+|||.+
T Consensus 568 ----~~~l~~~~~~~~~~vl~lDEi~~~~~-------------~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn~~ 630 (758)
T 3pxi_A 568 ----GGQLTEKVRRKPYSVVLLDAIEKAHP-------------DVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSNVG 630 (758)
T ss_dssp -------CHHHHHHCSSSEEEEECGGGSCH-------------HHHHHHHHHHHHSBCC-----CCBCTTCEEEEEESSS
T ss_pred ----cchhhHHHHhCCCeEEEEeCccccCH-------------HHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCCCC
Confidence 12223344455678999999998743 24455665555321 123457899999976
Q ss_pred CC------------chHHHHhcccceeEecCCC
Q 016911 358 WE------------LDAAMLRRLEKRVSFSLIA 378 (380)
Q Consensus 358 ~~------------Ld~aLlrRF~~~I~~plPd 378 (380)
.. +.+++++||+..+.|+.|+
T Consensus 631 ~~~~~~~~~~~~~~f~p~l~~Rl~~~i~~~~l~ 663 (758)
T 3pxi_A 631 ASEKDKVMGELKRAFRPEFINRIDEIIVFHSLE 663 (758)
T ss_dssp TTCCHHHHHHHHHHSCHHHHTTSSEEEECC--C
T ss_pred hhhHHHHHHHHHhhCCHHHHhhCCeEEecCCCC
Confidence 54 7899999999889888876
No 49
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.51 E-value=3.2e-13 Score=120.41 Aligned_cols=140 Identities=24% Similarity=0.309 Sum_probs=97.3
Q ss_pred CCCccccccchHHHHHHHHHHHhccccCcccccccCCCCceEEEEcCCCCcHHHHHHHHHHhc-----CCeEEEEecchh
Q 016911 204 PDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC-----KTTFFNISASSV 278 (380)
Q Consensus 204 p~~~~~~l~Gl~~~k~~L~~~l~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~l-----~~~~v~v~~s~l 278 (380)
+...+++++|.++.++.+.+.+... ...+++|+||||+|||++++++++.+ ...++.++++..
T Consensus 12 ~p~~~~~~~g~~~~~~~l~~~l~~~------------~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~ 79 (226)
T 2chg_A 12 RPRTLDEVVGQDEVIQRLKGYVERK------------NIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDE 79 (226)
T ss_dssp SCSSGGGCCSCHHHHHHHHHHHHTT------------CCCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETTCT
T ss_pred CCCCHHHHcCcHHHHHHHHHHHhCC------------CCCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEeccccc
Confidence 4456889999999999998876431 22459999999999999999999876 456788887654
Q ss_pred hhhhccchHHHHHHHH-HHHH-----hcCCeEEEEcCcchhhhhccccchhhHHHHHHHHHHHHHhcCCccCCCcEEEEE
Q 016911 279 VSKWRGDSEKLIKVLF-ELAR-----HHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLA 352 (380)
Q Consensus 279 ~~~~~ge~e~~l~~lf-~~A~-----~~~p~ILfIDEiD~l~~~~~~~~~~~~~~~~i~~~Ll~~ldgl~~~~~~VlVIa 352 (380)
... ..+.... .... ...+.+|+|||+|.+... ..+.|+..++. ....+.+|+
T Consensus 80 ~~~------~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~-------------~~~~l~~~l~~---~~~~~~~i~ 137 (226)
T 2chg_A 80 RGI------DVVRHKIKEFARTAPIGGAPFKIIFLDEADALTAD-------------AQAALRRTMEM---YSKSCRFIL 137 (226)
T ss_dssp TCH------HHHHHHHHHHHTSCCSTTCSCEEEEEETGGGSCHH-------------HHHHHHHHHHH---TTTTEEEEE
T ss_pred cCh------HHHHHHHHHHhcccCCCccCceEEEEeChhhcCHH-------------HHHHHHHHHHh---cCCCCeEEE
Confidence 321 1122222 2222 245789999999988432 12234444432 234577889
Q ss_pred EeCCCCCchHHHHhcccceeEecCCC
Q 016911 353 ATNLPWELDAAMLRRLEKRVSFSLIA 378 (380)
Q Consensus 353 tTN~~~~Ld~aLlrRF~~~I~~plPd 378 (380)
+||.+..+++++.+||. .+.++.|+
T Consensus 138 ~~~~~~~~~~~l~~r~~-~i~~~~~~ 162 (226)
T 2chg_A 138 SCNYVSRIIEPIQSRCA-VFRFKPVP 162 (226)
T ss_dssp EESCGGGSCHHHHTTSE-EEECCCCC
T ss_pred EeCChhhcCHHHHHhCc-eeecCCCC
Confidence 99999999999999997 67777665
No 50
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.49 E-value=8.1e-14 Score=149.81 Aligned_cols=152 Identities=22% Similarity=0.265 Sum_probs=104.6
Q ss_pred ccccchHHHHHHHHHHHhccccCcccccccCCCCceEEEEcCCCCcHHHHHHHHHHhcCCeEEEEecchhhhh-------
Q 016911 209 ESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSK------- 281 (380)
Q Consensus 209 ~~l~Gl~~~k~~L~~~l~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~l~~~~v~v~~s~l~~~------- 281 (380)
+.++|++++++.+...+.....- .....+|..++||+||||||||++|+++|..++.+++.++|+++...
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~~g---~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l~~~~~~i~~s~~~~~~~~~~l~ 534 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMARAG---LGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLI 534 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTT---CSCTTSCSEEEEEECSTTSSHHHHHHHHHHHHTCEEEEEEGGGCSSSSCCSSSC
T ss_pred hhccCHHHHHHHHHHHHHHHhcc---cCCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCEEEEechhhcchhhHhhhc
Confidence 34778888888777665432110 00112355689999999999999999999999999999999987543
Q ss_pred -----hccchHHHHHHHHHHHHhcCCeEEEEcCcchhhhhccccchhhHHHHHHHHHHHHHhcCCcc--------CCCcE
Q 016911 282 -----WRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQ--------SDELV 348 (380)
Q Consensus 282 -----~~ge~e~~l~~lf~~A~~~~p~ILfIDEiD~l~~~~~~~~~~~~~~~~i~~~Ll~~ldgl~~--------~~~~V 348 (380)
|+|..+. ..+....+...++||||||+|++.+ .+++.|+..++.-.. .-.++
T Consensus 535 g~~~g~~g~~~~--~~l~~~~~~~~~~vl~lDEi~~~~~-------------~~~~~Ll~~le~~~~~~~~g~~~~~~~~ 599 (758)
T 1r6b_X 535 GAPPGYVGFDQG--GLLTDAVIKHPHAVLLLDEIEKAHP-------------DVFNILLQVMDNGTLTDNNGRKADFRNV 599 (758)
T ss_dssp CCCSCSHHHHHT--THHHHHHHHCSSEEEEEETGGGSCH-------------HHHHHHHHHHHHSEEEETTTEEEECTTE
T ss_pred CCCCCCcCcccc--chHHHHHHhCCCcEEEEeCccccCH-------------HHHHHHHHHhcCcEEEcCCCCEEecCCe
Confidence 2222111 1233444555679999999998743 245556666653211 11457
Q ss_pred EEEEEeCCCC-------------------------CchHHHHhcccceeEecCCC
Q 016911 349 FVLAATNLPW-------------------------ELDAAMLRRLEKRVSFSLIA 378 (380)
Q Consensus 349 lVIatTN~~~-------------------------~Ld~aLlrRF~~~I~~plPd 378 (380)
+||+|||.+. .+++++++||+..+.|+.|+
T Consensus 600 ~iI~tsN~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~l~ 654 (758)
T 1r6b_X 600 VLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLS 654 (758)
T ss_dssp EEEEEECSSCC-----------------CHHHHHHHSCHHHHTTCSEEEECCCCC
T ss_pred EEEEecCcchhhhhhcccCccccchHHHHHHHHHHhcCHHHHhhCCcceeeCCCC
Confidence 8999999854 46789999999888888876
No 51
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.49 E-value=3.3e-14 Score=153.13 Aligned_cols=147 Identities=22% Similarity=0.322 Sum_probs=104.6
Q ss_pred ccchhhccCCCCccccccchHHHHHHHHHHHhccccCcccccccCCCCceEEEEcCCCCcHHHHHHHHHHhc--------
Q 016911 195 LCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC-------- 266 (380)
Q Consensus 195 ~~~~~~~~~p~~~~~~l~Gl~~~k~~L~~~l~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~l-------- 266 (380)
+..+.........+++++|.++.++.+...+.. ....++||+||||||||++|+++|..+
T Consensus 166 ~~~~l~~~~~~~~ld~iiG~~~~i~~l~~~l~~------------~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~ 233 (758)
T 3pxi_A 166 LARDLTAIAKEDSLDPVIGRSKEIQRVIEVLSR------------RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEI 233 (758)
T ss_dssp SCCBHHHHTTSSCSCCCCCCHHHHHHHHHHHHC------------SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTT
T ss_pred HHHHHHHHHhhCCCCCccCchHHHHHHHHHHhC------------CCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChh
Confidence 344444445566789999999999998887643 234689999999999999999999997
Q ss_pred --CCeEEEEecchhhhhhccchHHHHHHHHHHHHhcCCeEEEEcCcchhhhhccccchhhHHHHHHHHHHHHHhcCCccC
Q 016911 267 --KTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQS 344 (380)
Q Consensus 267 --~~~~v~v~~s~l~~~~~ge~e~~l~~lf~~A~~~~p~ILfIDEiD~l~~~~~~~~~~~~~~~~i~~~Ll~~ldgl~~~ 344 (380)
+.+++.+++ ...+.|+.+..++.+|..+....++||||| .. ....+.|+..++
T Consensus 234 l~~~~~~~~~~---g~~~~G~~e~~l~~~~~~~~~~~~~iLfiD------~~-----------~~~~~~L~~~l~----- 288 (758)
T 3pxi_A 234 LRDKRVMTLDM---GTKYRGEFEDRLKKVMDEIRQAGNIILFID------AA-----------IDASNILKPSLA----- 288 (758)
T ss_dssp TSSCCEECC-------------CTTHHHHHHHHHTCCCCEEEEC------C-------------------CCCTT-----
T ss_pred hcCCeEEEecc---cccccchHHHHHHHHHHHHHhcCCEEEEEc------Cc-----------hhHHHHHHHHHh-----
Confidence 778888887 455788888899999999998889999999 00 012233433332
Q ss_pred CCcEEEEEEeCCCC-----CchHHHHhcccceeEecCCCC
Q 016911 345 DELVFVLAATNLPW-----ELDAAMLRRLEKRVSFSLIAL 379 (380)
Q Consensus 345 ~~~VlVIatTN~~~-----~Ld~aLlrRF~~~I~~plPd~ 379 (380)
.+.+.+|++||..+ .+++++++||. .+.|+.|+.
T Consensus 289 ~~~v~~I~at~~~~~~~~~~~d~al~rRf~-~i~v~~p~~ 327 (758)
T 3pxi_A 289 RGELQCIGATTLDEYRKYIEKDAALERRFQ-PIQVDQPSV 327 (758)
T ss_dssp SSSCEEEEECCTTTTHHHHTTCSHHHHSEE-EEECCCCCH
T ss_pred cCCEEEEeCCChHHHHHHhhccHHHHhhCc-EEEeCCCCH
Confidence 34578999999988 69999999994 599999974
No 52
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.49 E-value=2.4e-14 Score=156.31 Aligned_cols=154 Identities=19% Similarity=0.319 Sum_probs=101.9
Q ss_pred CCCCccccccchHHHHHHHHHHHhccccCcccccccCCCCceEEEEcCCCCcHHHHHHHHHHhc----------CCeEEE
Q 016911 203 SPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC----------KTTFFN 272 (380)
Q Consensus 203 ~p~~~~~~l~Gl~~~k~~L~~~l~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~l----------~~~~v~ 272 (380)
.+...+++++|.++.++.+...+.. ....+++|+||||||||++++++|..+ +.+++.
T Consensus 164 ~r~~~ld~viGr~~~i~~l~~~l~~------------~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~ 231 (854)
T 1qvr_A 164 AAEGKLDPVIGRDEEIRRVIQILLR------------RTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVS 231 (854)
T ss_dssp HHTTCSCCCCSCHHHHHHHHHHHHC------------SSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEE
T ss_pred HhcCCCcccCCcHHHHHHHHHHHhc------------CCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEE
Confidence 3455789999999988888876532 234689999999999999999999987 789999
Q ss_pred Eecchhh--hhhccchHHHHHHHHHHHHhc-CCeEEEEcCcchhhhhccccchhhHHHHHHHHHHHHHhcCCccCCCcEE
Q 016911 273 ISASSVV--SKWRGDSEKLIKVLFELARHH-APSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVF 349 (380)
Q Consensus 273 v~~s~l~--~~~~ge~e~~l~~lf~~A~~~-~p~ILfIDEiD~l~~~~~~~~~~~~~~~~i~~~Ll~~ldgl~~~~~~Vl 349 (380)
++++.+. ..+.|+.+..++.++..+... .+.||||||++.+.+..... .. ....+.|...+. ...+.
T Consensus 232 l~~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~-g~----~~~~~~L~~~l~-----~~~i~ 301 (854)
T 1qvr_A 232 LQMGSLLAGAKYRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAE-GA----VDAGNMLKPALA-----RGELR 301 (854)
T ss_dssp ECC-----------CHHHHHHHHHHHHHTTCSSEEEEECCC------------------------HHHHH-----TTCCC
T ss_pred eehHHhhccCccchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCcc-ch----HHHHHHHHHHHh-----CCCeE
Confidence 9999886 457788899999999988865 67899999999997654321 11 112223333332 23466
Q ss_pred EEEEeCCCC----CchHHHHhcccceeEecCCCC
Q 016911 350 VLAATNLPW----ELDAAMLRRLEKRVSFSLIAL 379 (380)
Q Consensus 350 VIatTN~~~----~Ld~aLlrRF~~~I~~plPd~ 379 (380)
+|++||.++ .+++++.+||+. +.++.|+.
T Consensus 302 ~I~at~~~~~~~~~~d~aL~rRf~~-i~l~~p~~ 334 (854)
T 1qvr_A 302 LIGATTLDEYREIEKDPALERRFQP-VYVDEPTV 334 (854)
T ss_dssp EEEEECHHHHHHHTTCTTTCSCCCC-EEECCCCH
T ss_pred EEEecCchHHhhhccCHHHHhCCce-EEeCCCCH
Confidence 888888764 478999999985 89999873
No 53
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.49 E-value=3.6e-14 Score=152.56 Aligned_cols=155 Identities=24% Similarity=0.344 Sum_probs=114.1
Q ss_pred CCCCccccccchHHHHHHHHHHHhccccCcccccccCCCCceEEEEcCCCCcHHHHHHHHHHhc----------CCeEEE
Q 016911 203 SPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC----------KTTFFN 272 (380)
Q Consensus 203 ~p~~~~~~l~Gl~~~k~~L~~~l~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~l----------~~~~v~ 272 (380)
.....+++++|.++.++.+.+.+.. ....++||+||||||||++|+++|..+ +..++.
T Consensus 180 ~~~~~~d~~iGr~~~i~~l~~~l~~------------~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~ 247 (758)
T 1r6b_X 180 ARVGGIDPLIGREKELERAIQVLCR------------RRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYS 247 (758)
T ss_dssp HHTTCSCCCCSCHHHHHHHHHHHTS------------SSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEE
T ss_pred HhcCCCCCccCCHHHHHHHHHHHhc------------cCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEE
Confidence 3445789999999999888876632 245789999999999999999999987 667888
Q ss_pred Eecchhh--hhhccchHHHHHHHHHHHHhcCCeEEEEcCcchhhhhccccchhhHHHHHHHHHHHHHhcCCccCCCcEEE
Q 016911 273 ISASSVV--SKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFV 350 (380)
Q Consensus 273 v~~s~l~--~~~~ge~e~~l~~lf~~A~~~~p~ILfIDEiD~l~~~~~~~~~~~~~~~~i~~~Ll~~ldgl~~~~~~VlV 350 (380)
++++.+. ..+.|..+..++.++..+....++||||||++.+.+.........+ ..+.|. .+- ..+.+.+
T Consensus 248 ~~~~~l~~~~~~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~~~----~~~~L~----~~l-~~~~~~~ 318 (758)
T 1r6b_X 248 LDIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVD----AANLIK----PLL-SSGKIRV 318 (758)
T ss_dssp CCCC---CCCCCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHH----HHHHHS----SCS-SSCCCEE
T ss_pred EcHHHHhccccccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCcchHH----HHHHHH----HHH-hCCCeEE
Confidence 8887776 3577889999999999998878899999999999765432211111 222222 222 2345678
Q ss_pred EEEeCCCC-----CchHHHHhcccceeEecCCCC
Q 016911 351 LAATNLPW-----ELDAAMLRRLEKRVSFSLIAL 379 (380)
Q Consensus 351 IatTN~~~-----~Ld~aLlrRF~~~I~~plPd~ 379 (380)
|++||.++ .+|+++.+||. .+.++.|+.
T Consensus 319 I~at~~~~~~~~~~~d~aL~~Rf~-~i~v~~p~~ 351 (758)
T 1r6b_X 319 IGSTTYQEFSNIFEKDRALARRFQ-KIDITEPSI 351 (758)
T ss_dssp EEEECHHHHHCCCCCTTSSGGGEE-EEECCCCCH
T ss_pred EEEeCchHHhhhhhcCHHHHhCce-EEEcCCCCH
Confidence 88888643 57899999998 689999874
No 54
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=99.47 E-value=2.2e-13 Score=138.76 Aligned_cols=137 Identities=26% Similarity=0.372 Sum_probs=95.0
Q ss_pred CCCccccccchHHHH---HHHHHHHhccccCcccccccCCCCceEEEEcCCCCcHHHHHHHHHHhcCCeEEEEecchhhh
Q 016911 204 PDVKWESIKGLENAK---RLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVS 280 (380)
Q Consensus 204 p~~~~~~l~Gl~~~k---~~L~~~l~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~l~~~~v~v~~s~l~~ 280 (380)
+..++++++|++.++ +.+...+.. ....++||+||||||||++|+++++.++.+++.+++....
T Consensus 21 rP~~l~~ivGq~~~~~~~~~L~~~i~~------------~~~~~vLL~GppGtGKTtlAr~ia~~~~~~f~~l~a~~~~- 87 (447)
T 3pvs_A 21 RPENLAQYIGQQHLLAAGKPLPRAIEA------------GHLHSMILWGPPGTGKTTLAEVIARYANADVERISAVTSG- 87 (447)
T ss_dssp CCCSTTTCCSCHHHHSTTSHHHHHHHH------------TCCCEEEEECSTTSSHHHHHHHHHHHTTCEEEEEETTTCC-
T ss_pred CCCCHHHhCCcHHHHhchHHHHHHHHc------------CCCcEEEEECCCCCcHHHHHHHHHHHhCCCeEEEEeccCC-
Confidence 445789999999988 566665533 1226899999999999999999999999999999875432
Q ss_pred hhccchHHHHHHHHHHHH----hcCCeEEEEcCcchhhhhccccchhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEe--
Q 016911 281 KWRGDSEKLIKVLFELAR----HHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAAT-- 354 (380)
Q Consensus 281 ~~~ge~e~~l~~lf~~A~----~~~p~ILfIDEiD~l~~~~~~~~~~~~~~~~i~~~Ll~~ldgl~~~~~~VlVIatT-- 354 (380)
.+.++.++..+. ...+.||||||+|.+.... .+.|+..++. +.+.+|++|
T Consensus 88 ------~~~ir~~~~~a~~~~~~~~~~iLfIDEI~~l~~~~-------------q~~LL~~le~-----~~v~lI~att~ 143 (447)
T 3pvs_A 88 ------VKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQ-------------QDAFLPHIED-----GTITFIGATTE 143 (447)
T ss_dssp ------HHHHHHHHHHHHHHHHTTCCEEEEEETTTCC-------------------CCHHHHHT-----TSCEEEEEESS
T ss_pred ------HHHHHHHHHHHHHhhhcCCCcEEEEeChhhhCHHH-------------HHHHHHHHhc-----CceEEEecCCC
Confidence 233444444443 3457899999999985432 2335555542 235666666
Q ss_pred CCCCCchHHHHhcccceeEecCCC
Q 016911 355 NLPWELDAAMLRRLEKRVSFSLIA 378 (380)
Q Consensus 355 N~~~~Ld~aLlrRF~~~I~~plPd 378 (380)
|....+++++++|+. ++.++.|+
T Consensus 144 n~~~~l~~aL~sR~~-v~~l~~l~ 166 (447)
T 3pvs_A 144 NPSFELNSALLSRAR-VYLLKSLS 166 (447)
T ss_dssp CGGGSSCHHHHTTEE-EEECCCCC
T ss_pred CcccccCHHHhCcee-EEeeCCcC
Confidence 444579999999996 56676665
No 55
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=99.46 E-value=6.9e-13 Score=128.09 Aligned_cols=150 Identities=23% Similarity=0.263 Sum_probs=92.9
Q ss_pred CCCcccccc-c--hHHHHHHHHHHHhccccCcccccccCCCCceEEEEcCCCCcHHHHHHHHHHhc---CCeEEEEecch
Q 016911 204 PDVKWESIK-G--LENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASS 277 (380)
Q Consensus 204 p~~~~~~l~-G--l~~~k~~L~~~l~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~l---~~~~v~v~~s~ 277 (380)
+..+|++++ | ...+...+...+..+ ...+.+++|+||||||||++|+++++.+ +.+++.+++.+
T Consensus 6 ~~~~f~~fv~g~~~~~a~~~~~~~~~~~----------~~~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~ 75 (324)
T 1l8q_A 6 PKYTLENFIVGEGNRLAYEVVKEALENL----------GSLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADD 75 (324)
T ss_dssp TTCCSSSCCCCTTTHHHHHHHHHHHHTT----------TTSCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHH
T ss_pred CCCCcccCCCCCcHHHHHHHHHHHHhCc----------CCCCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHHH
Confidence 455688886 4 444444555444321 1245789999999999999999999988 88999999988
Q ss_pred hhhhhccchHHHHHHHHHHHHhcCCeEEEEcCcchhhhhccccchhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCCC
Q 016911 278 VVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLP 357 (380)
Q Consensus 278 l~~~~~ge~e~~l~~lf~~A~~~~p~ILfIDEiD~l~~~~~~~~~~~~~~~~i~~~Ll~~ldgl~~~~~~VlVIatTN~~ 357 (380)
+...+.+.........|.... ..+++|||||++.+..... ....++..++..... +..+|+++++.+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~-~~~~vL~iDEi~~l~~~~~-----------~~~~l~~~l~~~~~~-~~~iii~~~~~~ 142 (324)
T 1l8q_A 76 FAQAMVEHLKKGTINEFRNMY-KSVDLLLLDDVQFLSGKER-----------TQIEFFHIFNTLYLL-EKQIILASDRHP 142 (324)
T ss_dssp HHHHHHHHHHHTCHHHHHHHH-HTCSEEEEECGGGGTTCHH-----------HHHHHHHHHHHHHHT-TCEEEEEESSCG
T ss_pred HHHHHHHHHHcCcHHHHHHHh-cCCCEEEEcCcccccCChH-----------HHHHHHHHHHHHHHC-CCeEEEEecCCh
Confidence 866555433222222232222 2378999999999854211 111222222221112 235566666666
Q ss_pred C---CchHHHHhcccc--eeEecC
Q 016911 358 W---ELDAAMLRRLEK--RVSFSL 376 (380)
Q Consensus 358 ~---~Ld~aLlrRF~~--~I~~pl 376 (380)
. .+++++++||.. .++++.
T Consensus 143 ~~l~~l~~~L~sR~~~~~~i~l~~ 166 (324)
T 1l8q_A 143 QKLDGVSDRLVSRFEGGILVEIEL 166 (324)
T ss_dssp GGCTTSCHHHHHHHHTSEEEECCC
T ss_pred HHHHHhhhHhhhcccCceEEEeCC
Confidence 5 589999999974 444443
No 56
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.46 E-value=5.2e-13 Score=130.01 Aligned_cols=156 Identities=21% Similarity=0.192 Sum_probs=104.6
Q ss_pred CccccccchHHHHHHHHHHHhccccCcccccccCCCCceEEEEcCCCCcHHHHHHHHHHhc---------CCeEEEEecc
Q 016911 206 VKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---------KTTFFNISAS 276 (380)
Q Consensus 206 ~~~~~l~Gl~~~k~~L~~~l~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~l---------~~~~v~v~~s 276 (380)
...++++|.++.++.+...+...+. ...+.+++|+||||||||++++++++.+ +.+++.++|.
T Consensus 16 ~~p~~~~gr~~~~~~l~~~l~~~~~--------~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~ 87 (387)
T 2v1u_A 16 YVPDVLPHREAELRRLAEVLAPALR--------GEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNAR 87 (387)
T ss_dssp CCCSCCTTCHHHHHHHHHTTGGGTS--------SCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETT
T ss_pred cCCCCCCCHHHHHHHHHHHHHHHHc--------CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECC
Confidence 3447899999999988876543211 1345789999999999999999999988 7889999987
Q ss_pred hhhhhh----------------ccc-hHHHHHHHHHHHHhc-CCeEEEEcCcchhhhhccccchhhHHHHHHHHHHHHHh
Q 016911 277 SVVSKW----------------RGD-SEKLIKVLFELARHH-APSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQM 338 (380)
Q Consensus 277 ~l~~~~----------------~ge-~e~~l~~lf~~A~~~-~p~ILfIDEiD~l~~~~~~~~~~~~~~~~i~~~Ll~~l 338 (380)
...... .+. .......++...... .+.||+|||+|.+..... ....+..++..+
T Consensus 88 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~--------~~~~l~~l~~~~ 159 (387)
T 2v1u_A 88 HRETPYRVASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPG--------GQDLLYRITRIN 159 (387)
T ss_dssp TSCSHHHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTT--------HHHHHHHHHHGG
T ss_pred cCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCC--------CChHHHhHhhch
Confidence 532211 121 223344555544333 377999999999864320 123444555554
Q ss_pred cCCccCCCcEEEEEEeCCC---CCchHHHHhcccc-eeEecCCC
Q 016911 339 DGLTQSDELVFVLAATNLP---WELDAAMLRRLEK-RVSFSLIA 378 (380)
Q Consensus 339 dgl~~~~~~VlVIatTN~~---~~Ld~aLlrRF~~-~I~~plPd 378 (380)
+.... ..++.+|++||.+ +.+++.+.+||.. .+.|+.|+
T Consensus 160 ~~~~~-~~~~~~I~~t~~~~~~~~l~~~l~~r~~~~~i~l~~l~ 202 (387)
T 2v1u_A 160 QELGD-RVWVSLVGITNSLGFVENLEPRVKSSLGEVELVFPPYT 202 (387)
T ss_dssp GCC------CEEEEECSCSTTSSSSCHHHHTTTTSEECCBCCCC
T ss_pred hhcCC-CceEEEEEEECCCchHhhhCHHHHhcCCCeEEeeCCCC
Confidence 32210 4457789999888 6789999999975 77777765
No 57
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=99.45 E-value=2.9e-13 Score=131.01 Aligned_cols=148 Identities=21% Similarity=0.265 Sum_probs=90.6
Q ss_pred CCCCccccccchHHHHHHHHHHHhccccCcccccccCCCCceEEEEcCCCCcHHHHHHHHHHhcCCe-------------
Q 016911 203 SPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT------------- 269 (380)
Q Consensus 203 ~p~~~~~~l~Gl~~~k~~L~~~l~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~l~~~------------- 269 (380)
.+..+|++++|.+..++.+...... ....++||+||||||||++|+++++.++..
T Consensus 18 ~~~~~f~~i~G~~~~~~~l~~~~~~------------~~~~~vLl~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~ 85 (350)
T 1g8p_A 18 RPVFPFSAIVGQEDMKLALLLTAVD------------PGIGGVLVFGDRGTGKSTAVRALAALLPEIEAVEGCPVSSPNV 85 (350)
T ss_dssp CCCCCGGGSCSCHHHHHHHHHHHHC------------GGGCCEEEECCGGGCTTHHHHHHHHHSCCEEEETTCTTCCSSG
T ss_pred CCCCCchhccChHHHHHHHHHHhhC------------CCCceEEEECCCCccHHHHHHHHHHhCcccccccccccccccc
Confidence 3566799999999977765433221 123569999999999999999999988631
Q ss_pred --------------------EEEEecchhhhhhccch--HHHHH--------HHHHHHHhcCCeEEEEcCcchhhhhccc
Q 016911 270 --------------------FFNISASSVVSKWRGDS--EKLIK--------VLFELARHHAPSTIFLDEIDAIISQRGE 319 (380)
Q Consensus 270 --------------------~v~v~~s~l~~~~~ge~--e~~l~--------~lf~~A~~~~p~ILfIDEiD~l~~~~~~ 319 (380)
++.+..........|.. .+.+. ..+..+ .++||||||++.+...
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~g~~~~a---~~~vl~iDEi~~l~~~--- 159 (350)
T 1g8p_A 86 EMIPDWATVLSTNVIRKPTPVVDLPLGVSEDRVVGALDIERAISKGEKAFEPGLLARA---NRGYLYIDECNLLEDH--- 159 (350)
T ss_dssp GGSCTTCCCSCCCEEEECCCEEEECTTCCHHHHHCEECHHHHHHHCGGGEECCHHHHH---TTEEEEETTGGGSCHH---
T ss_pred ccccchhhhhccccccCCCcccccCCCcchhhheeechhhhhhcCCceeecCceeeec---CCCEEEEeChhhCCHH---
Confidence 12111111011111110 00000 011112 2689999999988542
Q ss_pred cchhhHHHHHHHHHHHHHhcC----Ccc------CCCcEEEEEEeCCCC-CchHHHHhcccceeEecCCC
Q 016911 320 ARSEHEASRRLKTELLIQMDG----LTQ------SDELVFVLAATNLPW-ELDAAMLRRLEKRVSFSLIA 378 (380)
Q Consensus 320 ~~~~~~~~~~i~~~Ll~~ldg----l~~------~~~~VlVIatTN~~~-~Ld~aLlrRF~~~I~~plPd 378 (380)
..+.|+..++. +.. ....+.+|+|||..+ .+++++++||+..+.++.|+
T Consensus 160 ----------~~~~Ll~~le~~~~~~~~~g~~~~~~~~~~li~~~n~~~~~l~~~L~~R~~~~~~l~~~~ 219 (350)
T 1g8p_A 160 ----------IVDLLLDVAQSGENVVERDGLSIRHPARFVLVGSGNPEEGDLRPQLLDRFGLSVEVLSPR 219 (350)
T ss_dssp ----------HHHHHHHHHHHSEEEECCTTCCEEEECCEEEEEEECSCSCCCCHHHHTTCSEEEECCCCC
T ss_pred ----------HHHHHHHHHhcCceEEEecceEEeeCCceEEEEEeCCCCCCCCHHHHhhcceEEEcCCCC
Confidence 22334443331 111 113588999999754 79999999998889998885
No 58
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.44 E-value=7.7e-13 Score=129.45 Aligned_cols=145 Identities=23% Similarity=0.224 Sum_probs=101.7
Q ss_pred ccccchHHHHHHHHHHHhccccCcccccccCCCCceEEEEcCCCCcHHHHHHHHHHhc-----------CCeEEEEecch
Q 016911 209 ESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC-----------KTTFFNISASS 277 (380)
Q Consensus 209 ~~l~Gl~~~k~~L~~~l~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~l-----------~~~~v~v~~s~ 277 (380)
++++|.++.++.+...+..... ...+.+++|+||||||||++++++++.+ +.+++.++|..
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~--------~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~ 91 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVK--------NEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCRE 91 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHT--------TCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHc--------CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECcc
Confidence 7899999999988877644322 1345689999999999999999999987 88999999876
Q ss_pred hh-hh----------h-------ccc-hHHHHHHHHHHHHhcCCeEEEEcCcchhhhhccccchhhHHHHHH-HHHHHHH
Q 016911 278 VV-SK----------W-------RGD-SEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRL-KTELLIQ 337 (380)
Q Consensus 278 l~-~~----------~-------~ge-~e~~l~~lf~~A~~~~p~ILfIDEiD~l~~~~~~~~~~~~~~~~i-~~~Ll~~ 337 (380)
.. .. . .+. ....+..++.......+ ||+|||+|.+...... .. +..++..
T Consensus 92 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~-vlilDEi~~l~~~~~~---------~~~l~~l~~~ 161 (384)
T 2qby_B 92 VGGTPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRA-IIYLDEVDTLVKRRGG---------DIVLYQLLRS 161 (384)
T ss_dssp HCSCHHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCE-EEEEETTHHHHHSTTS---------HHHHHHHHTS
T ss_pred CCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCC-EEEEECHHHhccCCCC---------ceeHHHHhcC
Confidence 43 11 1 111 13334555554544443 9999999998653211 11 2223222
Q ss_pred hcCCccCCCcEEEEEEeCCC---CCchHHHHhcccceeEecCCC
Q 016911 338 MDGLTQSDELVFVLAATNLP---WELDAAMLRRLEKRVSFSLIA 378 (380)
Q Consensus 338 ldgl~~~~~~VlVIatTN~~---~~Ld~aLlrRF~~~I~~plPd 378 (380)
. .++.+|++||.+ +.+++.+++||...+.|+.|+
T Consensus 162 ~-------~~~~iI~~t~~~~~~~~l~~~l~sr~~~~i~l~~l~ 198 (384)
T 2qby_B 162 D-------ANISVIMISNDINVRDYMEPRVLSSLGPSVIFKPYD 198 (384)
T ss_dssp S-------SCEEEEEECSSTTTTTTSCHHHHHTCCCEEEECCCC
T ss_pred C-------cceEEEEEECCCchHhhhCHHHHhcCCCeEEECCCC
Confidence 1 568889999987 678999999998788888775
No 59
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=99.43 E-value=6.2e-13 Score=124.68 Aligned_cols=147 Identities=22% Similarity=0.204 Sum_probs=90.2
Q ss_pred CccccccchHHHHHHHHHHHhccccCcccccccCCCCceEEEEcCCCCcHHHHHHHHHHhcC---CeEEEEecchhhhhh
Q 016911 206 VKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECK---TTFFNISASSVVSKW 282 (380)
Q Consensus 206 ~~~~~l~Gl~~~k~~L~~~l~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~l~---~~~v~v~~s~l~~~~ 282 (380)
.+|++++|.+..++.+.+.+.... ....++||+||||||||++|++++..+. .+++.++|+.+....
T Consensus 3 ~~f~~~ig~~~~~~~~~~~~~~~~----------~~~~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~~~~~~ 72 (265)
T 2bjv_A 3 EYKDNLLGEANSFLEVLEQVSHLA----------PLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENL 72 (265)
T ss_dssp -------CCCHHHHHHHHHHHHHT----------TSCSCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGGSCHHH
T ss_pred cccccceeCCHHHHHHHHHHHHHh----------CCCCCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecCCCChhH
Confidence 367889999988888776654322 2347899999999999999999999884 689999998764321
Q ss_pred -----ccchHHH-------HHHHHHHHHhcCCeEEEEcCcchhhhhccccchhhHHHHHHHHHHHHHhcCC--------c
Q 016911 283 -----RGDSEKL-------IKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGL--------T 342 (380)
Q Consensus 283 -----~ge~e~~-------l~~lf~~A~~~~p~ILfIDEiD~l~~~~~~~~~~~~~~~~i~~~Ll~~ldgl--------~ 342 (380)
.|..... ....+..+ .+++|||||++.+... .+..|+..++.- .
T Consensus 73 ~~~~l~g~~~~~~~g~~~~~~~~l~~a---~~~~l~lDEi~~l~~~-------------~q~~Ll~~l~~~~~~~~g~~~ 136 (265)
T 2bjv_A 73 LDSELFGHEAGAFTGAQKRHPGRFERA---DGGTLFLDELATAPMM-------------VQEKLLRVIEYGELERVGGSQ 136 (265)
T ss_dssp HHHHHHCCC---------CCCCHHHHT---TTSEEEEESGGGSCHH-------------HHHHHHHHHHHCEECCCCC--
T ss_pred HHHHhcCCcccccccccccccchhhhc---CCcEEEEechHhcCHH-------------HHHHHHHHHHhCCeecCCCcc
Confidence 1111000 01122222 3579999999988542 223344444321 1
Q ss_pred cCCCcEEEEEEeCCC-------CCchHHHHhcccceeEecCCCC
Q 016911 343 QSDELVFVLAATNLP-------WELDAAMLRRLEKRVSFSLIAL 379 (380)
Q Consensus 343 ~~~~~VlVIatTN~~-------~~Ld~aLlrRF~~~I~~plPd~ 379 (380)
.....+.+|+|||.+ ..+.+++.+||.. +.+.+|++
T Consensus 137 ~~~~~~~iI~atn~~~~~~~~~~~~~~~L~~Rl~~-~~i~lp~L 179 (265)
T 2bjv_A 137 PLQVNVRLVCATNADLPAMVNEGTFRADLLDALAF-DVVQLPPL 179 (265)
T ss_dssp CEECCCEEEEEESSCHHHHHHHTSSCHHHHHHHCS-EEEECCCG
T ss_pred cccCCeEEEEecCcCHHHHHHcCCccHHHHHhhcC-cEEeCCCh
Confidence 112347789999985 2367899999964 56666654
No 60
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=99.42 E-value=5.8e-13 Score=129.97 Aligned_cols=145 Identities=8% Similarity=0.063 Sum_probs=99.2
Q ss_pred ccchHHHHHHHHHHHhccccCcccccccCCCCceEEEEcCCCCcHHHHHHHHHHhc----------CCeEEEEecchhhh
Q 016911 211 IKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC----------KTTFFNISASSVVS 280 (380)
Q Consensus 211 l~Gl~~~k~~L~~~l~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~l----------~~~~v~v~~s~l~~ 280 (380)
|.|.++..+.+...+...+. ...+.+++|+||||||||++++++++++ +..++.++|..+..
T Consensus 22 L~~Re~E~~~i~~~L~~~i~--------~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t 93 (318)
T 3te6_A 22 LKSQVEDFTRIFLPIYDSLM--------SSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAG 93 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHH--------TTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC-
T ss_pred cCCHHHHHHHHHHHHHHHhc--------CCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCC
Confidence 66777777777766544332 2456899999999999999999999988 35788999876432
Q ss_pred h----------h------ccchHHHHHHHHHHH--HhcCCeEEEEcCcchhhhhccccchhhHHHHHHHHHHHHHhcCCc
Q 016911 281 K----------W------RGDSEKLIKVLFELA--RHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT 342 (380)
Q Consensus 281 ~----------~------~ge~e~~l~~lf~~A--~~~~p~ILfIDEiD~l~~~~~~~~~~~~~~~~i~~~Ll~~ldgl~ 342 (380)
. . .+.....++..|... ....+.||+|||+|.+. . +.++..++.+. .
T Consensus 94 ~~~~~~~I~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~--~----------q~~L~~l~~~~---~ 158 (318)
T 3te6_A 94 MDALYEKIWFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLL--S----------EKILQYFEKWI---S 158 (318)
T ss_dssp -HHHHHHHHHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSC--C----------THHHHHHHHHH---H
T ss_pred HHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhh--c----------chHHHHHHhcc---c
Confidence 2 1 133556677777764 34457899999999996 1 12333444432 2
Q ss_pred cCCCcEEEEEEeCCCCC----chHHHHhccc-ceeEecCCC
Q 016911 343 QSDELVFVLAATNLPWE----LDAAMLRRLE-KRVSFSLIA 378 (380)
Q Consensus 343 ~~~~~VlVIatTN~~~~----Ld~aLlrRF~-~~I~~plPd 378 (380)
....++.||+++|..+. +++++++||. ..+.|+.++
T Consensus 159 ~~~s~~~vI~i~n~~d~~~~~L~~~v~SR~~~~~i~F~pYt 199 (318)
T 3te6_A 159 SKNSKLSIICVGGHNVTIREQINIMPSLKAHFTEIKLNKVD 199 (318)
T ss_dssp CSSCCEEEEEECCSSCCCHHHHHTCHHHHTTEEEEECCCCC
T ss_pred ccCCcEEEEEEecCcccchhhcchhhhccCCceEEEeCCCC
Confidence 24456889999999875 4455678996 567777665
No 61
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=99.40 E-value=4.3e-13 Score=127.59 Aligned_cols=145 Identities=23% Similarity=0.258 Sum_probs=99.4
Q ss_pred CCCCccccccchHHHHHHHHHHHhccccCcccccccCCCCceEEEEcCCCCcHHHHHHHHHHhc-----CCeEEEEecch
Q 016911 203 SPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC-----KTTFFNISASS 277 (380)
Q Consensus 203 ~p~~~~~~l~Gl~~~k~~L~~~l~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~l-----~~~~v~v~~s~ 277 (380)
.+...|++++|.+..++.+...+.. ....+++|+||||+|||++|+++++.+ +.+++.+++++
T Consensus 11 ~~p~~~~~~~g~~~~~~~l~~~l~~------------~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~ 78 (319)
T 2chq_A 11 YRPRTLDEVVGQDEVIQRLKGYVER------------KNIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASD 78 (319)
T ss_dssp TSCSSGGGSCSCHHHHHHHHTTTTT------------TCCCCEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEETTS
T ss_pred cCCCCHHHHhCCHHHHHHHHHHHhC------------CCCCeEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeCcc
Confidence 4556789999999999888765532 122359999999999999999999986 44678888876
Q ss_pred hhhhhccchHHHHHHHHHHH-H-hcCCeEEEEcCcchhhhhccccchhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeC
Q 016911 278 VVSKWRGDSEKLIKVLFELA-R-HHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATN 355 (380)
Q Consensus 278 l~~~~~ge~e~~l~~lf~~A-~-~~~p~ILfIDEiD~l~~~~~~~~~~~~~~~~i~~~Ll~~ldgl~~~~~~VlVIatTN 355 (380)
..+ .......+....... . ...+.||+|||+|.+... ..+.|+..++ .....+.+|++||
T Consensus 79 ~~~--~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~-------------~~~~L~~~le---~~~~~~~~i~~~~ 140 (319)
T 2chq_A 79 ERG--IDVVRHKIKEFARTAPIGGAPFKIIFLDEADALTAD-------------AQAALRRTME---MYSKSCRFILSCN 140 (319)
T ss_dssp TTC--TTTSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCHH-------------HHHTTGGGTS---SSSSSEEEEEEES
T ss_pred ccC--hHHHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCHH-------------HHHHHHHHHH---hcCCCCeEEEEeC
Confidence 432 112222222221110 0 134789999999988432 2334555553 3345678899999
Q ss_pred CCCCchHHHHhcccceeEecCCC
Q 016911 356 LPWELDAAMLRRLEKRVSFSLIA 378 (380)
Q Consensus 356 ~~~~Ld~aLlrRF~~~I~~plPd 378 (380)
.+..+.+++.+|+. .+.|+.|+
T Consensus 141 ~~~~l~~~l~sr~~-~i~~~~~~ 162 (319)
T 2chq_A 141 YVSRIIEPIQSRCA-VFRFKPVP 162 (319)
T ss_dssp CGGGSCHHHHTTCE-EEECCCCC
T ss_pred ChhhcchHHHhhCe-EEEecCCC
Confidence 99999999999996 67787765
No 62
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=99.40 E-value=2.2e-13 Score=131.88 Aligned_cols=141 Identities=21% Similarity=0.233 Sum_probs=93.4
Q ss_pred ccccccchHHHHHHHHHHHhccccCcccccccCCCCceEEEEcCCCCcHHHHHHHHHHhcCCeEEEEecch------hhh
Q 016911 207 KWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASS------VVS 280 (380)
Q Consensus 207 ~~~~l~Gl~~~k~~L~~~l~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~l~~~~v~v~~s~------l~~ 280 (380)
.+++++|.+++++.+...+.. +.++||+||||||||++|+++|+.++.+++.+++.. +.+
T Consensus 25 ~~~~i~g~~~~~~~l~~~l~~--------------~~~vll~G~pGtGKT~la~~la~~~~~~~~~i~~~~~~~~~~l~g 90 (331)
T 2r44_A 25 VGKVVVGQKYMINRLLIGICT--------------GGHILLEGVPGLAKTLSVNTLAKTMDLDFHRIQFTPDLLPSDLIG 90 (331)
T ss_dssp HTTTCCSCHHHHHHHHHHHHH--------------TCCEEEESCCCHHHHHHHHHHHHHTTCCEEEEECCTTCCHHHHHE
T ss_pred hccceeCcHHHHHHHHHHHHc--------------CCeEEEECCCCCcHHHHHHHHHHHhCCCeEEEecCCCCChhhcCC
Confidence 356889999998888765532 368999999999999999999999999999988742 221
Q ss_pred hhccchHHHHHHHHHHHHhcC---CeEEEEcCcchhhhhccccchhhHHHHHHHHHHHHHhcCC--------ccCCCcEE
Q 016911 281 KWRGDSEKLIKVLFELARHHA---PSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGL--------TQSDELVF 349 (380)
Q Consensus 281 ~~~ge~e~~l~~lf~~A~~~~---p~ILfIDEiD~l~~~~~~~~~~~~~~~~i~~~Ll~~ldgl--------~~~~~~Vl 349 (380)
....... ...+. .... .+||||||++.+.+. ..+.|+..++.. ......++
T Consensus 91 ~~~~~~~---~~~~~--~~~g~l~~~vl~iDEi~~~~~~-------------~~~~Ll~~l~~~~~~~~g~~~~~~~~~~ 152 (331)
T 2r44_A 91 TMIYNQH---KGNFE--VKKGPVFSNFILADEVNRSPAK-------------VQSALLECMQEKQVTIGDTTYPLDNPFL 152 (331)
T ss_dssp EEEEETT---TTEEE--EEECTTCSSEEEEETGGGSCHH-------------HHHHHHHHHHHSEEEETTEEEECCSSCE
T ss_pred ceeecCC---CCceE--eccCcccccEEEEEccccCCHH-------------HHHHHHHHHhcCceeeCCEEEECCCCEE
Confidence 1110000 00000 0011 269999999987432 223344443321 11234577
Q ss_pred EEEEeCCCC-----CchHHHHhcccceeEecCCCC
Q 016911 350 VLAATNLPW-----ELDAAMLRRLEKRVSFSLIAL 379 (380)
Q Consensus 350 VIatTN~~~-----~Ld~aLlrRF~~~I~~plPd~ 379 (380)
||+|+|..+ .+++++++||...+.++.|+.
T Consensus 153 viat~np~~~~~~~~l~~~l~~Rf~~~i~i~~p~~ 187 (331)
T 2r44_A 153 VLATQNPVEQEGTYPLPEAQVDRFMMKIHLTYLDK 187 (331)
T ss_dssp EEEEECTTCCSCCCCCCHHHHTTSSEEEECCCCCH
T ss_pred EEEecCCCcccCcccCCHHHHhheeEEEEcCCCCH
Confidence 888888554 389999999988899999874
No 63
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.39 E-value=1.1e-12 Score=126.75 Aligned_cols=140 Identities=19% Similarity=0.300 Sum_probs=94.6
Q ss_pred CCCccccccchHHHHHHHHHHHhccccCcccccccCCCCceEEEEcCCCCcHHHHHHHHHHhcC------CeEEEEecch
Q 016911 204 PDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECK------TTFFNISASS 277 (380)
Q Consensus 204 p~~~~~~l~Gl~~~k~~L~~~l~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~l~------~~~v~v~~s~ 277 (380)
+...|++++|.+++++.+...+.. ....+++|+||||+|||++++++++.++ ..++.+++++
T Consensus 32 ~p~~~~~i~g~~~~~~~l~~~l~~------------~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~ 99 (353)
T 1sxj_D 32 RPKNLDEVTAQDHAVTVLKKTLKS------------ANLPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASD 99 (353)
T ss_dssp CCSSTTTCCSCCTTHHHHHHHTTC------------TTCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSS
T ss_pred CCCCHHHhhCCHHHHHHHHHHHhc------------CCCCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEcccc
Confidence 455789999999999888877532 1123599999999999999999999864 3577788766
Q ss_pred hhhhhccchHHHHHHHHH-HHH---------------hcCCeEEEEcCcchhhhhccccchhhHHHHHHHHHHHHHhcCC
Q 016911 278 VVSKWRGDSEKLIKVLFE-LAR---------------HHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGL 341 (380)
Q Consensus 278 l~~~~~ge~e~~l~~lf~-~A~---------------~~~p~ILfIDEiD~l~~~~~~~~~~~~~~~~i~~~Ll~~ldgl 341 (380)
..+. ..++.... ... ...+.||+|||+|.+... ..+.|+..++..
T Consensus 100 ~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~~~l~~~-------------~~~~Ll~~le~~ 160 (353)
T 1sxj_D 100 ERGI------SIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMTAD-------------AQSALRRTMETY 160 (353)
T ss_dssp CCCH------HHHTTHHHHHHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGSCHH-------------HHHHHHHHHHHT
T ss_pred ccch------HHHHHHHHHHhhhcccccchhhcccCCCCCceEEEEECCCccCHH-------------HHHHHHHHHHhc
Confidence 4211 11111111 111 123569999999988542 123455555332
Q ss_pred ccCCCcEEEEEEeCCCCCchHHHHhcccceeEecCCC
Q 016911 342 TQSDELVFVLAATNLPWELDAAMLRRLEKRVSFSLIA 378 (380)
Q Consensus 342 ~~~~~~VlVIatTN~~~~Ld~aLlrRF~~~I~~plPd 378 (380)
...+.+|++||.+..+++++++|+. .+.|+.|+
T Consensus 161 ---~~~~~~il~~~~~~~l~~~l~sR~~-~i~~~~~~ 193 (353)
T 1sxj_D 161 ---SGVTRFCLICNYVTRIIDPLASQCS-KFRFKALD 193 (353)
T ss_dssp ---TTTEEEEEEESCGGGSCHHHHHHSE-EEECCCCC
T ss_pred ---CCCceEEEEeCchhhCcchhhccCc-eEEeCCCC
Confidence 2345677889999999999999996 67776664
No 64
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=99.38 E-value=6.9e-13 Score=128.19 Aligned_cols=144 Identities=23% Similarity=0.280 Sum_probs=95.2
Q ss_pred ccccchHHHHHHHHHHHhccccCcccccccCCCCceEEEEcCCCCcHHHHHHHHHHhc---CCeEEEEecchhhhhhc--
Q 016911 209 ESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKWR-- 283 (380)
Q Consensus 209 ~~l~Gl~~~k~~L~~~l~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~l---~~~~v~v~~s~l~~~~~-- 283 (380)
++++|.+..++.+.+.+... .....++||+||||||||++|++++..+ +.+++.++|+.+.....
T Consensus 2 ~~iig~s~~~~~~~~~~~~~----------a~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~~~~~~l~~~ 71 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMV----------APSDATVLIHGDSGTGKELVARALHACSARSDRPLVTLNCAALNESLLES 71 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHH----------CSTTSCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECSSCCHHHHHH
T ss_pred CCcEECCHHHHHHHHHHHHH----------hCCCCcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEeCCCCChHHHHH
Confidence 35788888888887765442 2345789999999999999999999976 67899999987643211
Q ss_pred ---cc----hH---HHHHHHHHHHHhcCCeEEEEcCcchhhhhccccchhhHHHHHHHHHHHHHhcCCc--------cCC
Q 016911 284 ---GD----SE---KLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT--------QSD 345 (380)
Q Consensus 284 ---ge----~e---~~l~~lf~~A~~~~p~ILfIDEiD~l~~~~~~~~~~~~~~~~i~~~Ll~~ldgl~--------~~~ 345 (380)
|. .. ......|..+. +++|||||++.+... .+..|+..++... ...
T Consensus 72 ~lfg~~~g~~tg~~~~~~g~~~~a~---~g~L~LDEi~~l~~~-------------~q~~Ll~~l~~~~~~~~g~~~~~~ 135 (304)
T 1ojl_A 72 ELFGHEKGAFTGADKRREGRFVEAD---GGTLFLDEIGDISPL-------------MQVRLLRAIQEREVQRVGSNQTIS 135 (304)
T ss_dssp HHTCCCSSCCC---CCCCCHHHHHT---TSEEEEESCTTCCHH-------------HHHHHHHHHHSSBCCBTTBCCCCB
T ss_pred HhcCccccccCchhhhhcCHHHhcC---CCEEEEeccccCCHH-------------HHHHHHHHHhcCEeeecCCccccc
Confidence 11 00 01122344444 579999999998542 2334555554321 112
Q ss_pred CcEEEEEEeCCC-------CCchHHHHhcccceeEecCCCC
Q 016911 346 ELVFVLAATNLP-------WELDAAMLRRLEKRVSFSLIAL 379 (380)
Q Consensus 346 ~~VlVIatTN~~-------~~Ld~aLlrRF~~~I~~plPd~ 379 (380)
.++.||+|||.+ ..+++.|.+||. .+.+.+|++
T Consensus 136 ~~~riI~atn~~l~~~v~~g~fr~~L~~Rl~-~~~i~lPpL 175 (304)
T 1ojl_A 136 VDVRLIAATHRDLAEEVSAGRFRQDLYYRLN-VVAIEMPSL 175 (304)
T ss_dssp CCCEEEEEESSCHHHHHHHTSSCHHHHHHHS-SEEEECCCS
T ss_pred CCeEEEEecCccHHHHHHhCCcHHHHHhhcC-eeEEeccCH
Confidence 357899999985 135677888886 567777764
No 65
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.38 E-value=2.6e-12 Score=122.59 Aligned_cols=145 Identities=24% Similarity=0.262 Sum_probs=97.8
Q ss_pred CCCCccccccchHHHHHHHHHHHhccccCcccccccCCCCceEEEEcCCCCcHHHHHHHHHHhcC-----CeEEEEecch
Q 016911 203 SPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECK-----TTFFNISASS 277 (380)
Q Consensus 203 ~p~~~~~~l~Gl~~~k~~L~~~l~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~l~-----~~~v~v~~s~ 277 (380)
.+...|++++|.+..++.+...+.. ....+++|+||||+|||++|+++++.+. ..++.+++++
T Consensus 19 ~~p~~~~~~~g~~~~~~~l~~~l~~------------~~~~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~~~ 86 (327)
T 1iqp_A 19 YRPQRLDDIVGQEHIVKRLKHYVKT------------GSMPHLLFAGPPGVGKTTAALALARELFGENWRHNFLELNASD 86 (327)
T ss_dssp TCCCSTTTCCSCHHHHHHHHHHHHH------------TCCCEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEETTC
T ss_pred cCCCCHHHhhCCHHHHHHHHHHHHc------------CCCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEeeccc
Confidence 4556789999999999999877643 1223699999999999999999999863 3477788765
Q ss_pred hhhhhccchHHHHHHHHHHH--HhcCCeEEEEcCcchhhhhccccchhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeC
Q 016911 278 VVSKWRGDSEKLIKVLFELA--RHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATN 355 (380)
Q Consensus 278 l~~~~~ge~e~~l~~lf~~A--~~~~p~ILfIDEiD~l~~~~~~~~~~~~~~~~i~~~Ll~~ldgl~~~~~~VlVIatTN 355 (380)
..+. ......+....... ....+.||+|||+|.+... ..+.|+..++. ....+.+|++||
T Consensus 87 ~~~~--~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~-------------~~~~L~~~le~---~~~~~~~i~~~~ 148 (327)
T 1iqp_A 87 ERGI--NVIREKVKEFARTKPIGGASFKIIFLDEADALTQD-------------AQQALRRTMEM---FSSNVRFILSCN 148 (327)
T ss_dssp HHHH--HTTHHHHHHHHHSCCGGGCSCEEEEEETGGGSCHH-------------HHHHHHHHHHH---TTTTEEEEEEES
T ss_pred cCch--HHHHHHHHHHHhhCCcCCCCCeEEEEeCCCcCCHH-------------HHHHHHHHHHh---cCCCCeEEEEeC
Confidence 4321 11112222211100 0134789999999988432 22345555532 234577888999
Q ss_pred CCCCchHHHHhcccceeEecCCC
Q 016911 356 LPWELDAAMLRRLEKRVSFSLIA 378 (380)
Q Consensus 356 ~~~~Ld~aLlrRF~~~I~~plPd 378 (380)
.+..+.+++.+|+. .+.|+.|+
T Consensus 149 ~~~~l~~~l~sr~~-~~~~~~l~ 170 (327)
T 1iqp_A 149 YSSKIIEPIQSRCA-IFRFRPLR 170 (327)
T ss_dssp CGGGSCHHHHHTEE-EEECCCCC
T ss_pred CccccCHHHHhhCc-EEEecCCC
Confidence 99999999999997 67777665
No 66
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=99.38 E-value=2.9e-12 Score=129.95 Aligned_cols=153 Identities=17% Similarity=0.275 Sum_probs=93.8
Q ss_pred CCCcccccc-chH--HHHHHHHHHHhccccCcccccccCCCCceEEEEcCCCCcHHHHHHHHHHhc-----CCeEEEEec
Q 016911 204 PDVKWESIK-GLE--NAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC-----KTTFFNISA 275 (380)
Q Consensus 204 p~~~~~~l~-Gl~--~~k~~L~~~l~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~l-----~~~~v~v~~ 275 (380)
+..+|++++ |.. .+...+......+ .. +.+++|+||||+|||+||+++++.+ +.+++.+++
T Consensus 100 ~~~tfd~fv~g~~n~~a~~~~~~~a~~~----------~~-~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~ 168 (440)
T 2z4s_A 100 PDYTFENFVVGPGNSFAYHAALEVAKHP----------GR-YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITS 168 (440)
T ss_dssp TTCSGGGCCCCTTTHHHHHHHHHHHHST----------TS-SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEH
T ss_pred CCCChhhcCCCCchHHHHHHHHHHHhCC----------CC-CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeH
Confidence 455788877 533 3333344333221 11 4689999999999999999999988 788999999
Q ss_pred chhhhhhccchHHHHHHHHHHHHhcCCeEEEEcCcchhhhhccccchhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeC
Q 016911 276 SSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATN 355 (380)
Q Consensus 276 s~l~~~~~ge~e~~l~~lf~~A~~~~p~ILfIDEiD~l~~~~~~~~~~~~~~~~i~~~Ll~~ldgl~~~~~~VlVIatTN 355 (380)
..+...+.+.........|.......++||||||++.+..... ....++..++.+... +..+||++.+
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vL~IDEi~~l~~~~~-----------~q~~l~~~l~~l~~~-~~~iIitt~~ 236 (440)
T 2z4s_A 169 EKFLNDLVDSMKEGKLNEFREKYRKKVDILLIDDVQFLIGKTG-----------VQTELFHTFNELHDS-GKQIVICSDR 236 (440)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHTTTCSEEEEECGGGGSSCHH-----------HHHHHHHHHHHHHTT-TCEEEEEESS
T ss_pred HHHHHHHHHHHHcccHHHHHHHhcCCCCEEEEeCcccccCChH-----------HHHHHHHHHHHHHHC-CCeEEEEECC
Confidence 8876554433222111223333332578999999999864210 112233333222222 2344554444
Q ss_pred CCCC---chHHHHhccc--ceeEecCCCC
Q 016911 356 LPWE---LDAAMLRRLE--KRVSFSLIAL 379 (380)
Q Consensus 356 ~~~~---Ld~aLlrRF~--~~I~~plPd~ 379 (380)
.+.. +++.+++||. ..+.++.|+.
T Consensus 237 ~~~~l~~l~~~L~sR~~~g~~i~l~~p~~ 265 (440)
T 2z4s_A 237 EPQKLSEFQDRLVSRFQMGLVAKLEPPDE 265 (440)
T ss_dssp CGGGCSSCCHHHHHHHHSSBCCBCCCCCH
T ss_pred CHHHHHHHHHHHHhhccCCeEEEeCCCCH
Confidence 4444 8899999996 6778888864
No 67
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.38 E-value=7e-12 Score=121.75 Aligned_cols=156 Identities=21% Similarity=0.246 Sum_probs=104.8
Q ss_pred CCCccccccchHHHHHHHHHHHhccccCcccccccCCCCceEEEEcCCCCcHHHHHHHHHHhc------CCeEEEEecch
Q 016911 204 PDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC------KTTFFNISASS 277 (380)
Q Consensus 204 p~~~~~~l~Gl~~~k~~L~~~l~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~l------~~~~v~v~~s~ 277 (380)
+....++++|.++.++.+.+.+..... ...+..++|+||||+|||++++++++.+ +.+++.++|..
T Consensus 15 ~~~~p~~~~gr~~e~~~l~~~l~~~~~--------~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~ 86 (386)
T 2qby_A 15 PDYIPDELPHREDQIRKIASILAPLYR--------EEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQ 86 (386)
T ss_dssp SSCCCSCCTTCHHHHHHHHHSSGGGGG--------TCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHH
T ss_pred CccCCCCCCChHHHHHHHHHHHHHHHc--------CCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCC
Confidence 334457899999999888876543211 1345789999999999999999999988 78899999864
Q ss_pred hhh------hh----------ccc-hHHHHHHHHHHHHhcC-CeEEEEcCcchhhhhccccchhhHHHHHHHHHHHHHhc
Q 016911 278 VVS------KW----------RGD-SEKLIKVLFELARHHA-PSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMD 339 (380)
Q Consensus 278 l~~------~~----------~ge-~e~~l~~lf~~A~~~~-p~ILfIDEiD~l~~~~~~~~~~~~~~~~i~~~Ll~~ld 339 (380)
... .. .+. .......++....... |.||+|||++.+...... ..+..++..++
T Consensus 87 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~---------~~l~~l~~~~~ 157 (386)
T 2qby_A 87 IDTPYRVLADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYND---------DILYKLSRINS 157 (386)
T ss_dssp HCSHHHHHHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCS---------THHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcC---------HHHHHHhhchh
Confidence 321 10 111 2333445555544433 889999999998654211 13445555554
Q ss_pred CCccCCCcEEEEEEeCCC---CCchHHHHhcccc-eeEecCCC
Q 016911 340 GLTQSDELVFVLAATNLP---WELDAAMLRRLEK-RVSFSLIA 378 (380)
Q Consensus 340 gl~~~~~~VlVIatTN~~---~~Ld~aLlrRF~~-~I~~plPd 378 (380)
.. ...++.+|++||.+ ..+++.+.+||.. .+.++.++
T Consensus 158 ~~--~~~~~~~I~~~~~~~~~~~~~~~~~~r~~~~~i~l~~l~ 198 (386)
T 2qby_A 158 EV--NKSKISFIGITNDVKFVDLLDPRVKSSLSEEEIIFPPYN 198 (386)
T ss_dssp SC--CC--EEEEEEESCGGGGGGCTTHHHHTTTTEEEEECCCC
T ss_pred hc--CCCeEEEEEEECCCChHhhhCHHHhccCCCeeEEeCCCC
Confidence 33 33457888899877 3578889999864 77887765
No 68
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.38 E-value=7.1e-13 Score=136.90 Aligned_cols=162 Identities=18% Similarity=0.151 Sum_probs=97.3
Q ss_pred CCCCccccccchHHHHHHHHHHHhccccC-ccccccc----CCCCceEEEEcCCCCcHHHHHHHHHHhcCCeEEEEecch
Q 016911 203 SPDVKWESIKGLENAKRLLKEAVVMPIKY-PKYFTGL----LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASS 277 (380)
Q Consensus 203 ~p~~~~~~l~Gl~~~k~~L~~~l~~~l~~-~~~~~~~----~~~~~~vLL~GppGtGKT~la~ala~~l~~~~v~v~~s~ 277 (380)
.+...|++++|.+..++.+.+.+...... +..+... ..+.+++||+||||||||++|+++|++++.+++.+++++
T Consensus 33 yrP~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~~~~i~in~s~ 112 (516)
T 1sxj_A 33 YAPTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGYDILEQNASD 112 (516)
T ss_dssp TCCSSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTTCEEEEECTTS
T ss_pred cCCCCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcCCCEEEEeCCC
Confidence 34557999999999999999887652211 1112111 124579999999999999999999999999999999987
Q ss_pred hhhhhccchH-------HHHHHHHHHH-----HhcCCeEEEEcCcchhhhhccccchhhHHHHHHHHHHHHHhcCCccCC
Q 016911 278 VVSKWRGDSE-------KLIKVLFELA-----RHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSD 345 (380)
Q Consensus 278 l~~~~~ge~e-------~~l~~lf~~A-----~~~~p~ILfIDEiD~l~~~~~~~~~~~~~~~~i~~~Ll~~ldgl~~~~ 345 (380)
.......... ..+..+|..+ ....+.||||||+|.+...... .+..|+..++. ..
T Consensus 113 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~~~----------~l~~L~~~l~~---~~ 179 (516)
T 1sxj_A 113 VRSKTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDRG----------GVGQLAQFCRK---TS 179 (516)
T ss_dssp CCCHHHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCTTSTT----------HHHHHHHHHHH---CS
T ss_pred cchHHHHHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEECCCccchhhHH----------HHHHHHHHHHh---cC
Confidence 6543211000 0011122222 1245789999999999653221 12334444321 22
Q ss_pred CcEEEEEEeCCCCCchHHHHhcccceeEecCCCC
Q 016911 346 ELVFVLAATNLPWELDAAMLRRLEKRVSFSLIAL 379 (380)
Q Consensus 346 ~~VlVIatTN~~~~Ld~aLlrRF~~~I~~plPd~ 379 (380)
..+++|+++.....+. .+.+| ...+.|+.|+.
T Consensus 180 ~~iIli~~~~~~~~l~-~l~~r-~~~i~f~~~~~ 211 (516)
T 1sxj_A 180 TPLILICNERNLPKMR-PFDRV-CLDIQFRRPDA 211 (516)
T ss_dssp SCEEEEESCTTSSTTG-GGTTT-SEEEECCCCCH
T ss_pred CCEEEEEcCCCCccch-hhHhc-eEEEEeCCCCH
Confidence 2343333333223344 34444 45788888863
No 69
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.37 E-value=2.7e-12 Score=122.27 Aligned_cols=140 Identities=16% Similarity=0.153 Sum_probs=98.0
Q ss_pred CCCccccccchHHHHHHHHHHHhccccCcccccccCCCCceEEEEcCCCCcHHHHHHHHHHhc-----CCeEEEEecchh
Q 016911 204 PDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC-----KTTFFNISASSV 278 (380)
Q Consensus 204 p~~~~~~l~Gl~~~k~~L~~~l~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~l-----~~~~v~v~~s~l 278 (380)
+...+++++|.+..++.+...+... .. .+++|+||||+|||++|+++++.+ +.+++.+++++.
T Consensus 16 ~p~~~~~~~g~~~~~~~l~~~l~~~-----------~~-~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~ 83 (323)
T 1sxj_B 16 RPQVLSDIVGNKETIDRLQQIAKDG-----------NM-PHMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASDD 83 (323)
T ss_dssp CCSSGGGCCSCTHHHHHHHHHHHSC-----------CC-CCEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTSC
T ss_pred CCCCHHHHHCCHHHHHHHHHHHHcC-----------CC-CeEEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecCccc
Confidence 4456889999999999988876431 22 349999999999999999999986 345777877653
Q ss_pred hhhhccchHHHHHHHHHHHH-------hcCCeEEEEcCcchhhhhccccchhhHHHHHHHHHHHHHhcCCccCCCcEEEE
Q 016911 279 VSKWRGDSEKLIKVLFELAR-------HHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVL 351 (380)
Q Consensus 279 ~~~~~ge~e~~l~~lf~~A~-------~~~p~ILfIDEiD~l~~~~~~~~~~~~~~~~i~~~Ll~~ldgl~~~~~~VlVI 351 (380)
.+ ...++.++.... ...+.||+|||+|.+... ..+.|+..++. ....+.+|
T Consensus 84 ~~------~~~i~~~~~~~~~~~~~~~~~~~~viiiDe~~~l~~~-------------~~~~L~~~le~---~~~~~~~i 141 (323)
T 1sxj_B 84 RG------IDVVRNQIKHFAQKKLHLPPGKHKIVILDEADSMTAG-------------AQQALRRTMEL---YSNSTRFA 141 (323)
T ss_dssp CS------HHHHHTHHHHHHHBCCCCCTTCCEEEEEESGGGSCHH-------------HHHTTHHHHHH---TTTTEEEE
T ss_pred cC------hHHHHHHHHHHHhccccCCCCCceEEEEECcccCCHH-------------HHHHHHHHHhc---cCCCceEE
Confidence 21 233344443332 223789999999988432 12334444432 33457788
Q ss_pred EEeCCCCCchHHHHhcccceeEecCCC
Q 016911 352 AATNLPWELDAAMLRRLEKRVSFSLIA 378 (380)
Q Consensus 352 atTN~~~~Ld~aLlrRF~~~I~~plPd 378 (380)
++||.+..+.+++.+|+. .+.|+.|+
T Consensus 142 l~~~~~~~l~~~l~sr~~-~i~~~~~~ 167 (323)
T 1sxj_B 142 FACNQSNKIIEPLQSQCA-ILRYSKLS 167 (323)
T ss_dssp EEESCGGGSCHHHHTTSE-EEECCCCC
T ss_pred EEeCChhhchhHHHhhce-EEeecCCC
Confidence 899999999999999986 67887775
No 70
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.37 E-value=1.7e-12 Score=116.74 Aligned_cols=141 Identities=20% Similarity=0.259 Sum_probs=94.2
Q ss_pred CCCccccccchHHHHHHHHHHHhccccCcccccccCCCCceEEEEcCCCCcHHHHHHHHHHhcCCe--------------
Q 016911 204 PDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT-------------- 269 (380)
Q Consensus 204 p~~~~~~l~Gl~~~k~~L~~~l~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~l~~~-------------- 269 (380)
+...+++++|.+..++.+...+... ..+..++|+||||+|||++++++++.+...
T Consensus 18 ~p~~~~~~~g~~~~~~~l~~~l~~~-----------~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (250)
T 1njg_A 18 RPQTFADVVGQEHVLTALANGLSLG-----------RIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNC 86 (250)
T ss_dssp CCCSGGGCCSCHHHHHHHHHHHHHT-----------CCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCSCSHHH
T ss_pred CCccHHHHhCcHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHH
Confidence 4446889999999999988776431 233579999999999999999999877431
Q ss_pred ----------EEEEecchhhhhhccchHHHHHHHHHHHH----hcCCeEEEEcCcchhhhhccccchhhHHHHHHHHHHH
Q 016911 270 ----------FFNISASSVVSKWRGDSEKLIKVLFELAR----HHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELL 335 (380)
Q Consensus 270 ----------~v~v~~s~l~~~~~ge~e~~l~~lf~~A~----~~~p~ILfIDEiD~l~~~~~~~~~~~~~~~~i~~~Ll 335 (380)
++.++... ......++.++..+. ...+.+|+|||+|.+... ..+.|+
T Consensus 87 ~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~~-------------~~~~l~ 147 (250)
T 1njg_A 87 REIEQGRFVDLIEIDAAS------RTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRH-------------SFNALL 147 (250)
T ss_dssp HHHHTTCCSSEEEEETTC------GGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHH-------------HHHHHH
T ss_pred HHHhccCCcceEEecCcc------cccHHHHHHHHHHhhhchhcCCceEEEEECcccccHH-------------HHHHHH
Confidence 22222211 012233444444332 234689999999987321 234455
Q ss_pred HHhcCCccCCCcEEEEEEeCCCCCchHHHHhcccceeEecCCC
Q 016911 336 IQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRVSFSLIA 378 (380)
Q Consensus 336 ~~ldgl~~~~~~VlVIatTN~~~~Ld~aLlrRF~~~I~~plPd 378 (380)
..++. ....+.+|++||.+..+++++.+|+ ..++++.|+
T Consensus 148 ~~l~~---~~~~~~~i~~t~~~~~~~~~l~~r~-~~i~l~~l~ 186 (250)
T 1njg_A 148 KTLEE---PPEHVKFLLATTDPQKLPVTILSRC-LQFHLKALD 186 (250)
T ss_dssp HHHHS---CCTTEEEEEEESCGGGSCHHHHTTS-EEEECCCCC
T ss_pred HHHhc---CCCceEEEEEeCChHhCCHHHHHHh-hhccCCCCC
Confidence 55543 2445788899999888999999996 466776665
No 71
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=99.37 E-value=3.2e-12 Score=116.14 Aligned_cols=142 Identities=16% Similarity=0.168 Sum_probs=88.5
Q ss_pred CCCccccccc---hHHHHHHHHHHHhccccCcccccccCCCCceEEEEcCCCCcHHHHHHHHHHhc---CCeEEEEecch
Q 016911 204 PDVKWESIKG---LENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASS 277 (380)
Q Consensus 204 p~~~~~~l~G---l~~~k~~L~~~l~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~l---~~~~v~v~~s~ 277 (380)
+..+|+++++ ...+++.+...... ..+.+++|+||||||||+++++++..+ +.+++.+++.+
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~l~~~~~~------------~~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~ 90 (242)
T 3bos_A 23 DDETFTSYYPAAGNDELIGALKSAASG------------DGVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGI 90 (242)
T ss_dssp TTCSTTTSCC--CCHHHHHHHHHHHHT------------CSCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGG
T ss_pred CCCChhhccCCCCCHHHHHHHHHHHhC------------CCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHH
Confidence 3456888886 24556666554422 245789999999999999999999887 46788899887
Q ss_pred hhhhhccchHHHHHHHHHHHHhcCCeEEEEcCcchhhhhccccchhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeC-C
Q 016911 278 VVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATN-L 356 (380)
Q Consensus 278 l~~~~~ge~e~~l~~lf~~A~~~~p~ILfIDEiD~l~~~~~~~~~~~~~~~~i~~~Ll~~ldgl~~~~~~VlVIatTN-~ 356 (380)
+........ . ....+.+|+|||++.+..... ....++..++....... +.+|++|| .
T Consensus 91 ~~~~~~~~~--------~--~~~~~~vliiDe~~~~~~~~~-----------~~~~l~~~l~~~~~~~~-~~ii~~~~~~ 148 (242)
T 3bos_A 91 HASISTALL--------E--GLEQFDLICIDDVDAVAGHPL-----------WEEAIFDLYNRVAEQKR-GSLIVSASAS 148 (242)
T ss_dssp GGGSCGGGG--------T--TGGGSSEEEEETGGGGTTCHH-----------HHHHHHHHHHHHHHHCS-CEEEEEESSC
T ss_pred HHHHHHHHH--------H--hccCCCEEEEeccccccCCHH-----------HHHHHHHHHHHHHHcCC-CeEEEEcCCC
Confidence 755432111 1 113368999999998854210 11122222222222222 32444554 4
Q ss_pred CC---CchHHHHhccc--ceeEecCCCC
Q 016911 357 PW---ELDAAMLRRLE--KRVSFSLIAL 379 (380)
Q Consensus 357 ~~---~Ld~aLlrRF~--~~I~~plPd~ 379 (380)
+. .+++.+.+||. ..++++.|+.
T Consensus 149 ~~~~~~~~~~l~~r~~~~~~i~l~~~~~ 176 (242)
T 3bos_A 149 PMEAGFVLPDLVSRMHWGLTYQLQPMMD 176 (242)
T ss_dssp TTTTTCCCHHHHHHHHHSEEEECCCCCG
T ss_pred HHHHHHhhhhhhhHhhcCceEEeCCCCH
Confidence 43 45689999996 7788888874
No 72
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.34 E-value=3.4e-12 Score=139.33 Aligned_cols=153 Identities=25% Similarity=0.326 Sum_probs=103.2
Q ss_pred cccccchHHHHHHHHHHHhccccCcccccccCCCCceEEEEcCCCCcHHHHHHHHHHhc---CCeEEEEecchhhhh---
Q 016911 208 WESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSK--- 281 (380)
Q Consensus 208 ~~~l~Gl~~~k~~L~~~l~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~l---~~~~v~v~~s~l~~~--- 281 (380)
++.++|.+.+++.+...+...... .....+|..++||+||||||||++|++++..+ +.+++.++|+++...
T Consensus 557 ~~~viG~~~a~~~l~~~i~~~~~g---~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~~~~~~~~~~~ 633 (854)
T 1qvr_A 557 HKRVVGQDEAIRAVADAIRRARAG---LKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAV 633 (854)
T ss_dssp HHHSCSCHHHHHHHHHHHHHHGGG---CSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTTCCSSGGG
T ss_pred hcccCCcHHHHHHHHHHHHHHhcc---cCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEEechhccchhHH
Confidence 357899999999888776442110 01112344689999999999999999999998 789999999876543
Q ss_pred ---------hccchHHHHHHHHHHHHhcCCeEEEEcCcchhhhhccccchhhHHHHHHHHHHHHHhcCCcc--------C
Q 016911 282 ---------WRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQ--------S 344 (380)
Q Consensus 282 ---------~~ge~e~~l~~lf~~A~~~~p~ILfIDEiD~l~~~~~~~~~~~~~~~~i~~~Ll~~ldgl~~--------~ 344 (380)
|+|..+ ...+........++||||||++.+.+ .+.+.|+..++.-.. .
T Consensus 634 s~l~g~~~~~~G~~~--~g~l~~~~~~~~~~vl~lDEi~~l~~-------------~~~~~Ll~~l~~~~~~~~~g~~vd 698 (854)
T 1qvr_A 634 SRLIGAPPGYVGYEE--GGQLTEAVRRRPYSVILFDEIEKAHP-------------DVFNILLQILDDGRLTDSHGRTVD 698 (854)
T ss_dssp GGC----------------CHHHHHHHCSSEEEEESSGGGSCH-------------HHHHHHHHHHTTTEECCSSSCCEE
T ss_pred HHHcCCCCCCcCccc--cchHHHHHHhCCCeEEEEecccccCH-------------HHHHHHHHHhccCceECCCCCEec
Confidence 112211 12233444455578999999998733 355667777764321 1
Q ss_pred CCcEEEEEEeCCC--------------------------CCchHHHHhcccceeEecCCC
Q 016911 345 DELVFVLAATNLP--------------------------WELDAAMLRRLEKRVSFSLIA 378 (380)
Q Consensus 345 ~~~VlVIatTN~~--------------------------~~Ld~aLlrRF~~~I~~plPd 378 (380)
-.+++||+|||.. ..+.++|++||+..+.|+.|+
T Consensus 699 ~~~~iiI~tsn~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~f~~~l~~Rl~~~i~~~pl~ 758 (854)
T 1qvr_A 699 FRNTVIILTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRPLT 758 (854)
T ss_dssp CTTEEEEEECCTTHHHHHHHHHTTCCHHHHHHHHHHHHHTTSCHHHHHTCSBCCBCCCCC
T ss_pred cCCeEEEEecCcChHHHhhhcccccchHHHHHHHHHHHHhhCCHHHHHhcCeEEeCCCCC
Confidence 2467899999972 235688899998888887664
No 73
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=99.33 E-value=1.7e-12 Score=133.87 Aligned_cols=143 Identities=20% Similarity=0.224 Sum_probs=87.2
Q ss_pred ccccchHHHHHHHHHHHhccccCcccccccCCCCceEEEEcCCCCcHHHHHHHHHHhcC--CeEEEEecc-----hhhhh
Q 016911 209 ESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECK--TTFFNISAS-----SVVSK 281 (380)
Q Consensus 209 ~~l~Gl~~~k~~L~~~l~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~l~--~~~v~v~~s-----~l~~~ 281 (380)
..++|.+.+++.+...+. .+.++||+||||||||++|+++|..++ .++..+++. ++.+.
T Consensus 22 ~~ivGq~~~i~~l~~al~--------------~~~~VLL~GpPGtGKT~LAraLa~~l~~~~~f~~~~~~~~t~~dL~G~ 87 (500)
T 3nbx_X 22 KGLYERSHAIRLCLLAAL--------------SGESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGP 87 (500)
T ss_dssp TTCSSCHHHHHHHHHHHH--------------HTCEEEEECCSSSSHHHHHHHGGGGBSSCCEEEEECCTTCCHHHHHCC
T ss_pred hhhHHHHHHHHHHHHHHh--------------cCCeeEeecCchHHHHHHHHHHHHHHhhhhHHHHHHHhcCCHHHhcCc
Confidence 357889988887765542 236899999999999999999999884 355555553 22222
Q ss_pred hccchHHHHHHHHHHHHh-c--CCeEEEEcCcchhhhhccccchhhHHHHHHHHHHHHHhcC-------CccCCCcEEEE
Q 016911 282 WRGDSEKLIKVLFELARH-H--APSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDG-------LTQSDELVFVL 351 (380)
Q Consensus 282 ~~ge~e~~l~~lf~~A~~-~--~p~ILfIDEiD~l~~~~~~~~~~~~~~~~i~~~Ll~~ldg-------l~~~~~~VlVI 351 (380)
+.+..... ...+..+.. . .++|||||||+.+.+ .+.+.|+..|+. ........++|
T Consensus 88 ~~~~~~~~-~g~~~~~~~g~l~~~~IL~IDEI~r~~~-------------~~q~~LL~~lee~~v~i~G~~~~~~~~~iI 153 (500)
T 3nbx_X 88 LSIQALKD-EGRYERLTSGYLPEAEIVFLDEIWKAGP-------------AILNTLLTAINERQFRNGAHVEKIPMRLLV 153 (500)
T ss_dssp BC-----------CBCCTTSGGGCSEEEEESGGGCCH-------------HHHHHHHHHHHSSEEECSSSEEECCCCEEE
T ss_pred ccHHHHhh-chhHHhhhccCCCcceeeeHHhHhhhcH-------------HHHHHHHHHHHHHhccCCCCcCCcchhhhh
Confidence 22111111 112221111 1 367999999987632 234456666642 11111222467
Q ss_pred EEeCCCCC---chHHHHhcccceeEecCCCC
Q 016911 352 AATNLPWE---LDAAMLRRLEKRVSFSLIAL 379 (380)
Q Consensus 352 atTN~~~~---Ld~aLlrRF~~~I~~plPd~ 379 (380)
+|||.... ..+++++||...+.++.|+.
T Consensus 154 ~ATN~lpe~~~~~~aLldRF~~~i~v~~p~~ 184 (500)
T 3nbx_X 154 AASNELPEADSSLEALYDRMLIRLWLDKVQD 184 (500)
T ss_dssp EEESSCCCTTCTTHHHHTTCCEEEECCSCCC
T ss_pred hccccCCCccccHHHHHHHHHHHHHHHHhhh
Confidence 78886433 55799999988899999874
No 74
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.31 E-value=6.3e-12 Score=122.08 Aligned_cols=145 Identities=14% Similarity=0.167 Sum_probs=90.9
Q ss_pred cCCCCccccccchHHHHHHHHHHHhccccCcccccccCCCCceEEEEcCCCCcHHHHHHHHHHhcCC-------------
Q 016911 202 GSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKT------------- 268 (380)
Q Consensus 202 ~~p~~~~~~l~Gl~~~k~~L~~~l~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~l~~------------- 268 (380)
..+...+++++|.+.+++.+...+.. .... .+++|+||+|+||||+++++++.+..
T Consensus 7 kyrP~~~~~~vg~~~~~~~l~~~~~~----------~~~~-~~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~ 75 (354)
T 1sxj_E 7 KYRPKSLNALSHNEELTNFLKSLSDQ----------PRDL-PHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQF 75 (354)
T ss_dssp TTCCCSGGGCCSCHHHHHHHHTTTTC----------TTCC-CCEEEECSTTSSHHHHHHTHHHHHSCTTCCC--------
T ss_pred ccCCCCHHHhcCCHHHHHHHHHHHhh----------CCCC-CeEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceee
Confidence 34566799999999998887765411 0122 33999999999999999999996411
Q ss_pred ----------------eEEEEecchhhhhhccchHHHHHHHHHHHH--------------hcCCeEEEEcCcchhhhhcc
Q 016911 269 ----------------TFFNISASSVVSKWRGDSEKLIKVLFELAR--------------HHAPSTIFLDEIDAIISQRG 318 (380)
Q Consensus 269 ----------------~~v~v~~s~l~~~~~ge~e~~l~~lf~~A~--------------~~~p~ILfIDEiD~l~~~~~ 318 (380)
.++.++.++.. ......++.....+. ...|.|++|||++.+...
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~i~~~~~~~~~~~~~~ls~l~~~~~vlilDE~~~L~~~-- 149 (354)
T 1sxj_E 76 VTASNRKLELNVVSSPYHLEITPSDMG----NNDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSLTKD-- 149 (354)
T ss_dssp ----------CCEECSSEEEECCC--------CCHHHHHHHHHHHTTTTC------------CCEEEEEECTTSSCHH--
T ss_pred cccccccceeeeecccceEEecHhhcC----CcchHHHHHHHHHHHHhccccccccccccCCCCeEEEEeCccccCHH--
Confidence 12233322210 001112333333221 225679999999986321
Q ss_pred ccchhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCCCCCchHHHHhcccceeEecCCC
Q 016911 319 EARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRVSFSLIA 378 (380)
Q Consensus 319 ~~~~~~~~~~~i~~~Ll~~ldgl~~~~~~VlVIatTN~~~~Ld~aLlrRF~~~I~~plPd 378 (380)
..+.++..++.. ...+.+|.+|+.++.+.+++++|+ ..+.|+.|+
T Consensus 150 -----------~~~~L~~~le~~---~~~~~~Il~t~~~~~l~~~l~sR~-~~~~~~~~~ 194 (354)
T 1sxj_E 150 -----------AQAALRRTMEKY---SKNIRLIMVCDSMSPIIAPIKSQC-LLIRCPAPS 194 (354)
T ss_dssp -----------HHHHHHHHHHHS---TTTEEEEEEESCSCSSCHHHHTTS-EEEECCCCC
T ss_pred -----------HHHHHHHHHHhh---cCCCEEEEEeCCHHHHHHHHHhhc-eEEecCCcC
Confidence 223445544332 234678889999999999999999 678888776
No 75
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=99.31 E-value=7.1e-12 Score=122.08 Aligned_cols=142 Identities=20% Similarity=0.247 Sum_probs=96.1
Q ss_pred CCCCccccccchHHHHHHHHHHHhccccCcccccccCCCCceEEEEcCCCCcHHHHHHHHHHhcCCe-------------
Q 016911 203 SPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT------------- 269 (380)
Q Consensus 203 ~p~~~~~~l~Gl~~~k~~L~~~l~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~l~~~------------- 269 (380)
.+...|++++|.+..++.+...+... ..+..++|+||||+|||++++++++.++..
T Consensus 10 ~rp~~~~~~vg~~~~~~~L~~~l~~~-----------~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~ 78 (373)
T 1jr3_A 10 WRPQTFADVVGQEHVLTALANGLSLG-----------RIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDN 78 (373)
T ss_dssp TCCCSTTTSCSCHHHHHHHHHHHHHT-----------CCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCSSSHH
T ss_pred hCCCchhhccCcHHHHHHHHHHHHhC-----------CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHH
Confidence 34457889999999999988876421 233578999999999999999999987431
Q ss_pred -----------EEEEecchhhhhhccchHHHHHHHHHHHH----hcCCeEEEEcCcchhhhhccccchhhHHHHHHHHHH
Q 016911 270 -----------FFNISASSVVSKWRGDSEKLIKVLFELAR----HHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTEL 334 (380)
Q Consensus 270 -----------~v~v~~s~l~~~~~ge~e~~l~~lf~~A~----~~~p~ILfIDEiD~l~~~~~~~~~~~~~~~~i~~~L 334 (380)
++.++...- .....++.++..+. ...+.||+|||+|.+... ..+.|
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~-------------~~~~L 139 (373)
T 1jr3_A 79 CREIEQGRFVDLIEIDAASR------TKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRH-------------SFNAL 139 (373)
T ss_dssp HHHHHTSCCSSCEEEETTCS------CCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCHH-------------HHHHH
T ss_pred HHHHhccCCCceEEeccccc------CCHHHHHHHHHHHhhccccCCeEEEEEECcchhcHH-------------HHHHH
Confidence 233332210 01112344444443 234679999999988321 23456
Q ss_pred HHHhcCCccCCCcEEEEEEeCCCCCchHHHHhcccceeEecCCC
Q 016911 335 LIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRVSFSLIA 378 (380)
Q Consensus 335 l~~ldgl~~~~~~VlVIatTN~~~~Ld~aLlrRF~~~I~~plPd 378 (380)
+..++. ....+.+|++|+.+..+.+++++|+ ..+.|+.|+
T Consensus 140 l~~le~---~~~~~~~Il~~~~~~~l~~~l~sr~-~~i~~~~l~ 179 (373)
T 1jr3_A 140 LKTLEE---PPEHVKFLLATTDPQKLPVTILSRC-LQFHLKALD 179 (373)
T ss_dssp HHHHHS---CCSSEEEEEEESCGGGSCHHHHTTS-EEEECCCCC
T ss_pred HHHHhc---CCCceEEEEEeCChHhCcHHHHhhe-eEeeCCCCC
Confidence 666643 3445778889998888999999998 567777765
No 76
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.29 E-value=3.4e-11 Score=117.56 Aligned_cols=151 Identities=16% Similarity=0.135 Sum_probs=99.9
Q ss_pred ccccccchHHHHHHHHHHHhccccCcccccccCCCCc--eEEEEcCCCCcHHHHHHHHHHhc----CCeEEEEecchhhh
Q 016911 207 KWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWK--GILLFGPPGTGKTMLAKAVATEC----KTTFFNISASSVVS 280 (380)
Q Consensus 207 ~~~~l~Gl~~~k~~L~~~l~~~l~~~~~~~~~~~~~~--~vLL~GppGtGKT~la~ala~~l----~~~~v~v~~s~l~~ 280 (380)
..++++|.++.++.+...+...... ..+. +++|+||||+|||++++++++.+ +..++.++|.....
T Consensus 15 ~p~~l~gr~~~~~~l~~~l~~~~~~--------~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~~~ 86 (389)
T 1fnn_A 15 VPKRLPHREQQLQQLDILLGNWLRN--------PGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRN 86 (389)
T ss_dssp CCSCCTTCHHHHHHHHHHHHHHHHS--------TTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCCS
T ss_pred CCCCCCChHHHHHHHHHHHHHHHcC--------CCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccCCC
Confidence 3478999999999888776442211 2234 89999999999999999999988 57888999765321
Q ss_pred h------h----------ccc-hHHHHHHHHHHHH-hcCCeEEEEcCcchhhhhccccchhhHHHHHHHHHHHHHhcCCc
Q 016911 281 K------W----------RGD-SEKLIKVLFELAR-HHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT 342 (380)
Q Consensus 281 ~------~----------~ge-~e~~l~~lf~~A~-~~~p~ILfIDEiD~l~~~~~~~~~~~~~~~~i~~~Ll~~ldgl~ 342 (380)
. . .+. .......+..... ...|.||+|||++.+. ...+..|+..++...
T Consensus 87 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~-------------~~~~~~L~~~~~~~~ 153 (389)
T 1fnn_A 87 FTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLA-------------PDILSTFIRLGQEAD 153 (389)
T ss_dssp HHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSC-------------HHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccc-------------hHHHHHHHHHHHhCC
Confidence 1 0 011 1222233333322 2347899999999881 123445555554332
Q ss_pred c-CCCcEEEEEEeCCC---CCchHHHHhcccc-eeEecCCC
Q 016911 343 Q-SDELVFVLAATNLP---WELDAAMLRRLEK-RVSFSLIA 378 (380)
Q Consensus 343 ~-~~~~VlVIatTN~~---~~Ld~aLlrRF~~-~I~~plPd 378 (380)
. ...++.+|++||.+ +.+++.+.+||.. .+.|+.++
T Consensus 154 ~~~~~~~~iI~~~~~~~~~~~l~~~~~~r~~~~~i~~~pl~ 194 (389)
T 1fnn_A 154 KLGAFRIALVIVGHNDAVLNNLDPSTRGIMGKYVIRFSPYT 194 (389)
T ss_dssp HHSSCCEEEEEEESSTHHHHTSCHHHHHHHTTCEEECCCCB
T ss_pred CCCcCCEEEEEEECCchHHHHhCHHhhhcCCCceEEeCCCC
Confidence 1 11357888999988 5688999999975 67777654
No 77
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.23 E-value=2.8e-11 Score=117.75 Aligned_cols=141 Identities=21% Similarity=0.265 Sum_probs=93.6
Q ss_pred CCCCccccccchHHHHHHHHHHHhccccCcccccccCCCCceEEEEcCCCCcHHHHHHHHHHhcC-----CeEEEEecch
Q 016911 203 SPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECK-----TTFFNISASS 277 (380)
Q Consensus 203 ~p~~~~~~l~Gl~~~k~~L~~~l~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~l~-----~~~v~v~~s~ 277 (380)
.+...+++++|.+.+++.+...+..- .. .+++|+||||||||++++++|+.+. ..+..+++++
T Consensus 19 ~rp~~~~~~~g~~~~~~~L~~~i~~g-----------~~-~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~ 86 (340)
T 1sxj_C 19 YRPETLDEVYGQNEVITTVRKFVDEG-----------KL-PHLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNASD 86 (340)
T ss_dssp TCCSSGGGCCSCHHHHHHHHHHHHTT-----------CC-CCEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECTTS
T ss_pred hCCCcHHHhcCcHHHHHHHHHHHhcC-----------CC-ceEEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEcCcc
Confidence 35567899999999999888776421 11 2499999999999999999999873 2466666654
Q ss_pred hhhhhccchHHHHHHHHHH-HHh-----cCCeEEEEcCcchhhhhccccchhhHHHHHHHHHHHHHhcCCccCCCcEEEE
Q 016911 278 VVSKWRGDSEKLIKVLFEL-ARH-----HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVL 351 (380)
Q Consensus 278 l~~~~~ge~e~~l~~lf~~-A~~-----~~p~ILfIDEiD~l~~~~~~~~~~~~~~~~i~~~Ll~~ldgl~~~~~~VlVI 351 (380)
..+ ...++..... +.. ..+.|++|||+|.+... ..+.|+..++. ....+.+|
T Consensus 87 ~~~------~~~ir~~i~~~~~~~~~~~~~~~viiiDe~~~l~~~-------------~~~~L~~~le~---~~~~~~~i 144 (340)
T 1sxj_C 87 DRG------IDVVRNQIKDFASTRQIFSKGFKLIILDEADAMTNA-------------AQNALRRVIER---YTKNTRFC 144 (340)
T ss_dssp CCS------HHHHHTHHHHHHHBCCSSSCSCEEEEETTGGGSCHH-------------HHHHHHHHHHH---TTTTEEEE
T ss_pred ccc------HHHHHHHHHHHHhhcccCCCCceEEEEeCCCCCCHH-------------HHHHHHHHHhc---CCCCeEEE
Confidence 211 1222222222 211 23689999999988432 12345555532 23446678
Q ss_pred EEeCCCCCchHHHHhcccceeEecCCC
Q 016911 352 AATNLPWELDAAMLRRLEKRVSFSLIA 378 (380)
Q Consensus 352 atTN~~~~Ld~aLlrRF~~~I~~plPd 378 (380)
.+||.+..+.+++++|+. .+.|+.++
T Consensus 145 l~~n~~~~i~~~i~sR~~-~~~~~~l~ 170 (340)
T 1sxj_C 145 VLANYAHKLTPALLSQCT-RFRFQPLP 170 (340)
T ss_dssp EEESCGGGSCHHHHTTSE-EEECCCCC
T ss_pred EEecCccccchhHHhhce-eEeccCCC
Confidence 889999999999999986 45665443
No 78
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.18 E-value=1.9e-10 Score=112.05 Aligned_cols=147 Identities=21% Similarity=0.257 Sum_probs=95.4
Q ss_pred CCCccccccchHHHHHHHHHHHhccccCcccccccCCCCceEEEEcCCCCcHHHHHHHHHHhcCCeEEEEecchhhhhhc
Q 016911 204 PDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWR 283 (380)
Q Consensus 204 p~~~~~~l~Gl~~~k~~L~~~l~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~l~~~~v~v~~s~l~~~~~ 283 (380)
....+++++|.+.+++.+...+..... ...+..+++|+||||+||||+++++|+.++.++...++..+..
T Consensus 20 r~~~l~~~~g~~~~~~~l~~~i~~~~~-------~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~--- 89 (334)
T 1in4_A 20 RPKSLDEFIGQENVKKKLSLALEAAKM-------RGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVK--- 89 (334)
T ss_dssp SCSSGGGCCSCHHHHHHHHHHHHHHHH-------HTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCS---
T ss_pred CCccHHHccCcHHHHHHHHHHHHHHHh-------cCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcC---
Confidence 344688899998888887765532110 0134468999999999999999999999998877666543321
Q ss_pred cchHHHHHHHHHHHHhcCCeEEEEcCcchhhhhccccchhhHHHHHHHHHHHHHhcCCc---------------cCCCcE
Q 016911 284 GDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT---------------QSDELV 348 (380)
Q Consensus 284 ge~e~~l~~lf~~A~~~~p~ILfIDEiD~l~~~~~~~~~~~~~~~~i~~~Ll~~ldgl~---------------~~~~~V 348 (380)
...+..++.. ...+.|+||||++.+.+.. .+.++..+.... ..-..+
T Consensus 90 ---~~~l~~~~~~--~~~~~v~~iDE~~~l~~~~-------------~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~ 151 (334)
T 1in4_A 90 ---QGDMAAILTS--LERGDVLFIDEIHRLNKAV-------------EELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPF 151 (334)
T ss_dssp ---HHHHHHHHHH--CCTTCEEEEETGGGCCHHH-------------HHHHHHHHHTSCCCC---------------CCC
T ss_pred ---HHHHHHHHHH--ccCCCEEEEcchhhcCHHH-------------HHHHHHHHHhcccceeeccCcccccccccCCCe
Confidence 1122222221 2246799999999885411 111222221110 001235
Q ss_pred EEEEEeCCCCCchHHHHhcccceeEecCCC
Q 016911 349 FVLAATNLPWELDAAMLRRLEKRVSFSLIA 378 (380)
Q Consensus 349 lVIatTN~~~~Ld~aLlrRF~~~I~~plPd 378 (380)
.++++|+.+..+++++++||.....++.|+
T Consensus 152 ~li~at~~~~~Ls~~l~sR~~l~~~Ld~~~ 181 (334)
T 1in4_A 152 TLVGATTRSGLLSSPLRSRFGIILELDFYT 181 (334)
T ss_dssp EEEEEESCGGGSCHHHHTTCSEEEECCCCC
T ss_pred EEEEecCCcccCCHHHHHhcCceeeCCCCC
Confidence 677899999999999999998777787775
No 79
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=99.18 E-value=2.9e-11 Score=139.01 Aligned_cols=152 Identities=18% Similarity=0.194 Sum_probs=106.0
Q ss_pred CCCccccccchHHHHHHHHHHHhccccC----------cccccc-------------------cCCCCceEEEEcCCCCc
Q 016911 204 PDVKWESIKGLENAKRLLKEAVVMPIKY----------PKYFTG-------------------LLSPWKGILLFGPPGTG 254 (380)
Q Consensus 204 p~~~~~~l~Gl~~~k~~L~~~l~~~l~~----------~~~~~~-------------------~~~~~~~vLL~GppGtG 254 (380)
+...|+++.|+++.++.+.+.+.+++.+ ++.+.. ....++.+|++||||||
T Consensus 1015 ~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tG~~glD~~lg~GG~p~g~~~l~~G~~g~G 1094 (1706)
T 3cmw_A 1015 SGSSTGSMSAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSG 1094 (1706)
T ss_dssp ---------CTTHHHHHHHHHHHHHHHHHHCGGGSEEGGGCGGGSCCEECCSCHHHHHHTSSSSEETTSEEEEECSTTSS
T ss_pred CCceeeecCCccHHHHHHHHHHHHHHhhccCcccchhchhhhhccccccccCchhHHHHhccCCCCCCCEEEEEcCCCCC
Confidence 3467999999999999999888887743 333332 12234459999999999
Q ss_pred HHHHHHHHHHhc---CCeEEEEecchhh------------hhhccc----hHHHHHHHHHHHHhcCCeEEEEcCcchhhh
Q 016911 255 KTMLAKAVATEC---KTTFFNISASSVV------------SKWRGD----SEKLIKVLFELARHHAPSTIFLDEIDAIIS 315 (380)
Q Consensus 255 KT~la~ala~~l---~~~~v~v~~s~l~------------~~~~ge----~e~~l~~lf~~A~~~~p~ILfIDEiD~l~~ 315 (380)
||++|++++.+. +.+.+.++..+.. ..|+++ +++.++.++..|+...|++||+|+++.+.+
T Consensus 1095 KT~la~~~~~~~~~~g~~~~fi~~~~~~~~~~~~~~G~d~~~~~~~~~~~~e~~l~~~~~~ar~~~~~~i~~d~~~al~~ 1174 (1706)
T 3cmw_A 1095 KTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTP 1174 (1706)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTCCSEEEESCGGGCCC
T ss_pred hHHHHHHHHHHhhhcCCceeEEEcccchHHHHHHHhCCCHHHHhhccccchHHHHHHHHHHHHhcCCeEEEeCchHhcCc
Confidence 999999999866 4565666665433 456667 899999999999999999999999999988
Q ss_pred hccc---c-chhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCCC
Q 016911 316 QRGE---A-RSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLP 357 (380)
Q Consensus 316 ~~~~---~-~~~~~~~~~i~~~Ll~~ldgl~~~~~~VlVIatTN~~ 357 (380)
.+.. . ..+..+..+++++++..++++....+ |+|| +||+.
T Consensus 1175 ~~~~~g~~~~~~~~~~~r~~~q~l~~~~~~~~~~~-v~v~-~~n~~ 1218 (1706)
T 3cmw_A 1175 KAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSN-TLLI-FINQI 1218 (1706)
T ss_dssp HHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHHTT-CEEE-EEECE
T ss_pred ccccccccccccccHHHHHHHHHHHHHHhhhccCC-eEEE-Eeccc
Confidence 7431 1 11225677888999999988655444 5555 77765
No 80
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=99.18 E-value=1.7e-10 Score=111.68 Aligned_cols=131 Identities=11% Similarity=0.098 Sum_probs=90.7
Q ss_pred chHHHHHHHHHHHhccccCcccccccCCCCceEEEEcCCCCcHHHHHHHHHHhc------CCeEEEEecchhhhhhccch
Q 016911 213 GLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC------KTTFFNISASSVVSKWRGDS 286 (380)
Q Consensus 213 Gl~~~k~~L~~~l~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~l------~~~~v~v~~s~l~~~~~ge~ 286 (380)
|++++++.+...+... + ..++||+||||+|||++|+++|+.+ ...++.++++.- ...
T Consensus 1 g~~~~~~~L~~~i~~~-----------~-~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~-----~~~ 63 (305)
T 2gno_A 1 GAKDQLETLKRIIEKS-----------E-GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGE-----NIG 63 (305)
T ss_dssp ---CHHHHHHHHHHTC-----------S-SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSS-----CBC
T ss_pred ChHHHHHHHHHHHHCC-----------C-CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCcC-----CCC
Confidence 4566677777665431 2 3689999999999999999999863 346677765420 122
Q ss_pred HHHHHHHHHHHHhc----CCeEEEEcCcchhhhhccccchhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCCCCCchH
Q 016911 287 EKLIKVLFELARHH----APSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDA 362 (380)
Q Consensus 287 e~~l~~lf~~A~~~----~p~ILfIDEiD~l~~~~~~~~~~~~~~~~i~~~Ll~~ldgl~~~~~~VlVIatTN~~~~Ld~ 362 (380)
-..++.+.+.+... ...|++|||+|.+... ..+.|+..++ ..+..+++|.+|+.++.+.+
T Consensus 64 id~ir~li~~~~~~p~~~~~kvviIdead~lt~~-------------a~naLLk~LE---ep~~~t~fIl~t~~~~kl~~ 127 (305)
T 2gno_A 64 IDDIRTIKDFLNYSPELYTRKYVIVHDCERMTQQ-------------AANAFLKALE---EPPEYAVIVLNTRRWHYLLP 127 (305)
T ss_dssp HHHHHHHHHHHTSCCSSSSSEEEEETTGGGBCHH-------------HHHHTHHHHH---SCCTTEEEEEEESCGGGSCH
T ss_pred HHHHHHHHHHHhhccccCCceEEEeccHHHhCHH-------------HHHHHHHHHh---CCCCCeEEEEEECChHhChH
Confidence 33456666666533 2469999999998432 3456777775 34456778888888999999
Q ss_pred HHHhcccceeEecCCCC
Q 016911 363 AMLRRLEKRVSFSLIAL 379 (380)
Q Consensus 363 aLlrRF~~~I~~plPd~ 379 (380)
++++| .++|+.|+.
T Consensus 128 tI~SR---~~~f~~l~~ 141 (305)
T 2gno_A 128 TIKSR---VFRVVVNVP 141 (305)
T ss_dssp HHHTT---SEEEECCCC
T ss_pred HHHce---eEeCCCCCH
Confidence 99999 788888764
No 81
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=99.16 E-value=3.6e-12 Score=134.08 Aligned_cols=151 Identities=22% Similarity=0.235 Sum_probs=89.7
Q ss_pred ccccchHHHHHHHHHHHhccccCccccc-ccCCCCceEEEEcCCCCcHHHHHHHHHHhcCCeEEEE----ecchhhhhhc
Q 016911 209 ESIKGLENAKRLLKEAVVMPIKYPKYFT-GLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNI----SASSVVSKWR 283 (380)
Q Consensus 209 ~~l~Gl~~~k~~L~~~l~~~l~~~~~~~-~~~~~~~~vLL~GppGtGKT~la~ala~~l~~~~v~v----~~s~l~~~~~ 283 (380)
..+.|++.+++.+...+... ...... .......++||+||||||||++|+++|+.++...+.. ++.++.+...
T Consensus 295 ~~I~G~e~vk~al~~~l~~g--~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~~~r~~~~~~~~~~~~~l~~~~~ 372 (595)
T 3f9v_A 295 PSIYGHWELKEALALALFGG--VPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRVAPRAVYTTGKGSTAAGLTAAVV 372 (595)
T ss_dssp STTSCCHHHHHHHTTTTTCC--CCEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTTCSCEECCCTTCSTTTTSEEECS
T ss_pred chhcChHHHHHHHHHHHhCC--CcccccCCCcCCCcceEEECCCchHHHHHHHHHHHhCCCceecCCCccccccccceee
Confidence 57889998887664332111 000000 1233445899999999999999999999997766543 2223222211
Q ss_pred cch---H-HHHHHHHHHHHhcCCeEEEEcCcchhhhhccccchhhHHHHHHHHHHHHHhcCCc----------cCCCcEE
Q 016911 284 GDS---E-KLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT----------QSDELVF 349 (380)
Q Consensus 284 ge~---e-~~l~~lf~~A~~~~p~ILfIDEiD~l~~~~~~~~~~~~~~~~i~~~Ll~~ldgl~----------~~~~~Vl 349 (380)
... + ......+..|. ++|+||||+|.+.+. ..+.|+..|+.-. ....++.
T Consensus 373 ~~~~~g~~~~~~G~l~~A~---~gil~IDEid~l~~~-------------~q~~Ll~~le~~~i~i~~~g~~~~~~~~~~ 436 (595)
T 3f9v_A 373 REKGTGEYYLEAGALVLAD---GGIAVIDEIDKMRDE-------------DRVAIHEAMEQQTVSIAKAGIVAKLNARAA 436 (595)
T ss_dssp SGGGTSSCSEEECHHHHHS---SSEECCTTTTCCCSH-------------HHHHHHHHHHSSSEEEESSSSEEEECCCCE
T ss_pred eccccccccccCCeeEecC---CCcEEeehhhhCCHh-------------HhhhhHHHHhCCEEEEecCCcEEEecCceE
Confidence 100 0 00011223332 579999999988432 2334555554211 1234578
Q ss_pred EEEEeCCCC-------------CchHHHHhcccc-eeEecCC
Q 016911 350 VLAATNLPW-------------ELDAAMLRRLEK-RVSFSLI 377 (380)
Q Consensus 350 VIatTN~~~-------------~Ld~aLlrRF~~-~I~~plP 377 (380)
||+|||... .+++++++||+. .+..+.|
T Consensus 437 vIaatNp~~G~~~~~~~~~~ni~l~~aLl~RFDl~~~~~~~~ 478 (595)
T 3f9v_A 437 VIAAGNPKFGRYISERPVSDNINLPPTILSRFDLIFILKDQP 478 (595)
T ss_dssp EEEEECCTTCCSCTTSCSCTTTCSCSSSGGGCSCCEEECCTT
T ss_pred EEEEcCCcCCccCcccCchhccCCCHHHHhhCeEEEEeCCCC
Confidence 999999986 899999999974 3444444
No 82
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=99.16 E-value=4.5e-10 Score=109.46 Aligned_cols=134 Identities=13% Similarity=0.136 Sum_probs=89.6
Q ss_pred hHHHHHHHHHHHhccccCcccccccCCCCceEEEEcCCCCcHHHHHHHHHHhcCCe------------------------
Q 016911 214 LENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT------------------------ 269 (380)
Q Consensus 214 l~~~k~~L~~~l~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~l~~~------------------------ 269 (380)
+.+..+.+...+.. .+.+..+||+||||+|||++|+++|+.+...
T Consensus 7 ~~~~~~~l~~~i~~-----------~~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d 75 (334)
T 1a5t_A 7 LRPDFEKLVASYQA-----------GRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPD 75 (334)
T ss_dssp GHHHHHHHHHHHHT-----------TCCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTT
T ss_pred hHHHHHHHHHHHHc-----------CCcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCC
Confidence 45566666665532 1334579999999999999999999987432
Q ss_pred EEEEecchhhhhhccchHHHHHHHHHHHHh----cCCeEEEEcCcchhhhhccccchhhHHHHHHHHHHHHHhcCCccCC
Q 016911 270 FFNISASSVVSKWRGDSEKLIKVLFELARH----HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSD 345 (380)
Q Consensus 270 ~v~v~~s~l~~~~~ge~e~~l~~lf~~A~~----~~p~ILfIDEiD~l~~~~~~~~~~~~~~~~i~~~Ll~~ldgl~~~~ 345 (380)
++.++..+- + .......++.+.+.+.. ..+.|++|||+|.+... ..+.|+..++. ..
T Consensus 76 ~~~~~~~~~-~--~~~~i~~ir~l~~~~~~~~~~~~~kvviIdead~l~~~-------------a~naLLk~lEe---p~ 136 (334)
T 1a5t_A 76 YYTLAPEKG-K--NTLGVDAVREVTEKLNEHARLGGAKVVWVTDAALLTDA-------------AANALLKTLEE---PP 136 (334)
T ss_dssp EEEECCCTT-C--SSBCHHHHHHHHHHTTSCCTTSSCEEEEESCGGGBCHH-------------HHHHHHHHHTS---CC
T ss_pred EEEEecccc-C--CCCCHHHHHHHHHHHhhccccCCcEEEEECchhhcCHH-------------HHHHHHHHhcC---CC
Confidence 333333210 0 01123445666655543 23679999999988432 34567777743 44
Q ss_pred CcEEEEEEeCCCCCchHHHHhcccceeEecCCC
Q 016911 346 ELVFVLAATNLPWELDAAMLRRLEKRVSFSLIA 378 (380)
Q Consensus 346 ~~VlVIatTN~~~~Ld~aLlrRF~~~I~~plPd 378 (380)
..+++|.+||.++.+.+++++|+. .+.|+.|+
T Consensus 137 ~~~~~Il~t~~~~~l~~ti~SRc~-~~~~~~~~ 168 (334)
T 1a5t_A 137 AETWFFLATREPERLLATLRSRCR-LHYLAPPP 168 (334)
T ss_dssp TTEEEEEEESCGGGSCHHHHTTSE-EEECCCCC
T ss_pred CCeEEEEEeCChHhCcHHHhhcce-eeeCCCCC
Confidence 567888899999999999999985 57887775
No 83
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.14 E-value=9.4e-11 Score=103.45 Aligned_cols=98 Identities=15% Similarity=0.169 Sum_probs=59.5
Q ss_pred CCccccccc----hHHHHHHHHHHHhccccCcccccccCCCCceEEEEcCCCCcHHHHHHHHHHhc----CCeEEEEecc
Q 016911 205 DVKWESIKG----LENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC----KTTFFNISAS 276 (380)
Q Consensus 205 ~~~~~~l~G----l~~~k~~L~~~l~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~l----~~~~v~v~~s 276 (380)
..+|+++++ ...+++.+.+.+.... ..++.+++|+|||||||||+++++++.+ +..++.+++.
T Consensus 6 ~~~f~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~ 76 (180)
T 3ec2_A 6 NANLDTYHPKNVSQNRALLTIRVFVHNFN---------PEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTK 76 (180)
T ss_dssp TCCSSSCCCCSHHHHHHHHHHHHHHHSCC---------GGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHH
T ss_pred hCccccccCCCHHHHHHHHHHHHHHHhcc---------ccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHH
Confidence 445777765 3344444444432211 1345789999999999999999999887 5567778877
Q ss_pred hhhhhhccchHHH-HHHHHHHHHhcCCeEEEEcCcchh
Q 016911 277 SVVSKWRGDSEKL-IKVLFELARHHAPSTIFLDEIDAI 313 (380)
Q Consensus 277 ~l~~~~~ge~e~~-l~~lf~~A~~~~p~ILfIDEiD~l 313 (380)
++...+....... ........ ..|.+|+|||++..
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~--~~~~llilDE~~~~ 112 (180)
T 3ec2_A 77 DLIFRLKHLMDEGKDTKFLKTV--LNSPVLVLDDLGSE 112 (180)
T ss_dssp HHHHHHHHHHHHTCCSHHHHHH--HTCSEEEEETCSSS
T ss_pred HHHHHHHHHhcCchHHHHHHHh--cCCCEEEEeCCCCC
Confidence 7654432111000 00112222 24789999999854
No 84
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=99.03 E-value=4.4e-10 Score=97.53 Aligned_cols=108 Identities=16% Similarity=0.226 Sum_probs=69.5
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHhc---CCeEEEEecchhhhhhccchHHHHHHHHHHHHhcCCeEEEEcCcchhhhhc
Q 016911 241 PWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQR 317 (380)
Q Consensus 241 ~~~~vLL~GppGtGKT~la~ala~~l---~~~~v~v~~s~l~~~~~ge~e~~l~~lf~~A~~~~p~ILfIDEiD~l~~~~ 317 (380)
++..++|+||+|+|||+|++++++.+ +...+.++..++... +....+.+|+|||++.+....
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~~~~~---------------~~~~~~~lLilDE~~~~~~~~ 99 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASMPLT---------------DAAFEAEYLAVDQVEKLGNEE 99 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTTSCCC---------------GGGGGCSEEEEESTTCCCSHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHHhhHH---------------HHHhCCCEEEEeCccccChHH
Confidence 45789999999999999999999987 666777887765432 112247899999998753221
Q ss_pred cccchhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeC-CCCCch--HHHHhcccceeEecCC
Q 016911 318 GEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATN-LPWELD--AAMLRRLEKRVSFSLI 377 (380)
Q Consensus 318 ~~~~~~~~~~~~i~~~Ll~~ldgl~~~~~~VlVIatTN-~~~~Ld--~aLlrRF~~~I~~plP 377 (380)
+..+-.+++.+ ......+ +|.||| .|..+. +.+.+|+...+.+.+.
T Consensus 100 ----------~~~l~~li~~~---~~~g~~~-iiits~~~p~~l~~~~~L~SRl~~g~~~~l~ 148 (149)
T 2kjq_A 100 ----------QALLFSIFNRF---RNSGKGF-LLLGSEYTPQQLVIREDLRTRMAYCLVYEVK 148 (149)
T ss_dssp ----------HHHHHHHHHHH---HHHTCCE-EEEEESSCTTTSSCCHHHHHHGGGSEECCCC
T ss_pred ----------HHHHHHHHHHH---HHcCCcE-EEEECCCCHHHccccHHHHHHHhcCeeEEec
Confidence 11222222222 2222222 444666 444332 8999999887777654
No 85
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=98.99 E-value=3.6e-10 Score=118.84 Aligned_cols=52 Identities=35% Similarity=0.521 Sum_probs=43.8
Q ss_pred cCCCCccccccchHHHHHHHHHHHhccccCcccccccCCCCceEEEEcCCCCcHHHHHHHHHHhcC
Q 016911 202 GSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECK 267 (380)
Q Consensus 202 ~~p~~~~~~l~Gl~~~k~~L~~~l~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~l~ 267 (380)
..+...+++++|.+.+++.+...+. .+.+++|+|||||||||+|+++++.++
T Consensus 34 ~~rp~~l~~i~G~~~~l~~l~~~i~--------------~g~~vll~Gp~GtGKTtlar~ia~~l~ 85 (604)
T 3k1j_A 34 EVPEKLIDQVIGQEHAVEVIKTAAN--------------QKRHVLLIGEPGTGKSMLGQAMAELLP 85 (604)
T ss_dssp CCCSSHHHHCCSCHHHHHHHHHHHH--------------TTCCEEEECCTTSSHHHHHHHHHHTSC
T ss_pred cccccccceEECchhhHhhcccccc--------------CCCEEEEEeCCCCCHHHHHHHHhccCC
Confidence 3456678999999999988887652 346899999999999999999999884
No 86
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=98.95 E-value=4.7e-09 Score=103.23 Aligned_cols=159 Identities=14% Similarity=0.088 Sum_probs=92.5
Q ss_pred ccccccchHHHHHHHHHHH-hccccCcccccccCCCCceEEE--EcCCCCcHHHHHHHHHHhc---------CCeEEEEe
Q 016911 207 KWESIKGLENAKRLLKEAV-VMPIKYPKYFTGLLSPWKGILL--FGPPGTGKTMLAKAVATEC---------KTTFFNIS 274 (380)
Q Consensus 207 ~~~~l~Gl~~~k~~L~~~l-~~~l~~~~~~~~~~~~~~~vLL--~GppGtGKT~la~ala~~l---------~~~~v~v~ 274 (380)
..+.++|.+..++.+.+.+ ...... ....+..++| +||||+|||++++.+++.+ +..++.++
T Consensus 20 ~p~~l~gR~~el~~l~~~l~~~~~~~------~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (412)
T 1w5s_A 20 IPPELRVRRGEAEALARIYLNRLLSG------AGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVN 93 (412)
T ss_dssp CCSSCSSSCHHHHHHHHHHHHHHHTS------SCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred CCCCCCChHHHHHHHHHHHhHHHhcC------CCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEE
Confidence 3478999999888888776 432211 0023468899 9999999999999999876 45677888
Q ss_pred cchhh------hhh----------ccc-hHHHHHHHHHHHH-hcCCeEEEEcCcchhhhhccccchhhHHHHHHHHHHHH
Q 016911 275 ASSVV------SKW----------RGD-SEKLIKVLFELAR-HHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLI 336 (380)
Q Consensus 275 ~s~l~------~~~----------~ge-~e~~l~~lf~~A~-~~~p~ILfIDEiD~l~~~~~~~~~~~~~~~~i~~~Ll~ 336 (380)
|.... ... .+. .......+..... ...|.||+|||++.+...... . ...+..++.
T Consensus 94 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~---~----~~~l~~l~~ 166 (412)
T 1w5s_A 94 AFNAPNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRI---A----AEDLYTLLR 166 (412)
T ss_dssp GGGCCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTS---C----HHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCc---c----hHHHHHHHH
Confidence 74321 110 011 1222233332222 234789999999998542110 0 112233333
Q ss_pred HhcCCccCC--CcEEEEEEeCCCC---Cch---HHHHhcccceeEecCCC
Q 016911 337 QMDGLTQSD--ELVFVLAATNLPW---ELD---AAMLRRLEKRVSFSLIA 378 (380)
Q Consensus 337 ~ldgl~~~~--~~VlVIatTN~~~---~Ld---~aLlrRF~~~I~~plPd 378 (380)
.+....... .++.+|++|+.++ .++ +.+.++|...+.++.++
T Consensus 167 ~~~~~~~~~~~~~v~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~ 216 (412)
T 1w5s_A 167 VHEEIPSRDGVNRIGFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYK 216 (412)
T ss_dssp HHHHSCCTTSCCBEEEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCC
T ss_pred HHHhcccCCCCceEEEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCC
Confidence 333222113 5688888887664 244 66777886665555543
No 87
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=98.95 E-value=3.5e-09 Score=126.54 Aligned_cols=129 Identities=20% Similarity=0.273 Sum_probs=84.1
Q ss_pred CCCceEEEEcCCCCcHHHHH-HHHHHhcCCeEEEEecchhhhhhccchHHHHHHHHHHH-H--------------hcCCe
Q 016911 240 SPWKGILLFGPPGTGKTMLA-KAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELA-R--------------HHAPS 303 (380)
Q Consensus 240 ~~~~~vLL~GppGtGKT~la-~ala~~l~~~~v~v~~s~l~~~~~ge~e~~l~~lf~~A-~--------------~~~p~ 303 (380)
..++++||+||||||||++| ++++...+..++.++++...+. ..+...++.. . ...+.
T Consensus 1265 ~~~~~vLL~GPpGtGKT~la~~~l~~~~~~~~~~infsa~ts~------~~~~~~i~~~~~~~~~~~g~~~~P~~~gk~~ 1338 (2695)
T 4akg_A 1265 NSKRGIILCGPPGSGKTMIMNNALRNSSLYDVVGINFSKDTTT------EHILSALHRHTNYVTTSKGLTLLPKSDIKNL 1338 (2695)
T ss_dssp HHTCEEEEECSTTSSHHHHHHHHHHSCSSCEEEEEECCTTCCH------HHHHHHHHHHBCCEEETTTEEEEEBSSSSCE
T ss_pred HCCCeEEEECCCCCCHHHHHHHHHhcCCCCceEEEEeecCCCH------HHHHHHHHHHhhhccccCCccccCCCCCceE
Confidence 34579999999999999999 5555555778888888765422 2223333322 1 12246
Q ss_pred EEEEcCcchhhhhccccchhhHHHHHHHHHHHHHhcCCccCC-------CcEEEEEEeCCCC-----CchHHHHhcccce
Q 016911 304 TIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSD-------ELVFVLAATNLPW-----ELDAAMLRRLEKR 371 (380)
Q Consensus 304 ILfIDEiD~l~~~~~~~~~~~~~~~~i~~~Ll~~ldgl~~~~-------~~VlVIatTN~~~-----~Ld~aLlrRF~~~ 371 (380)
||||||++....++.+.+...+ ++.+++. ..++.... .++.+|||+|++. .++++++||| .+
T Consensus 1339 VlFiDEinmp~~d~yg~q~~le----lLRq~le-~gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~l~~rllRrf-~v 1412 (2695)
T 4akg_A 1339 VLFCDEINLPKLDKYGSQNVVL----FLRQLME-KQGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSERFTRHA-AI 1412 (2695)
T ss_dssp EEEEETTTCSCCCSSSCCHHHH----HHHHHHH-TSSEECTTTCCEEEEESEEEEEEECCTTSTTCCCCCHHHHTTE-EE
T ss_pred EEEecccccccccccCchhHHH----HHHHHHh-cCCEEEcCCCcEEEecCEEEEEecCCCccCCCccCChhhhhee-eE
Confidence 9999999875444433333222 3333432 22332211 3488999999995 7999999999 78
Q ss_pred eEecCCCCC
Q 016911 372 VSFSLIALT 380 (380)
Q Consensus 372 I~~plPd~~ 380 (380)
+.++.|+.+
T Consensus 1413 i~i~~P~~~ 1421 (2695)
T 4akg_A 1413 LYLGYPSGK 1421 (2695)
T ss_dssp EECCCCTTT
T ss_pred EEeCCCCHH
Confidence 999999853
No 88
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=98.89 E-value=1.7e-09 Score=96.81 Aligned_cols=70 Identities=21% Similarity=0.375 Sum_probs=48.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhc---CCeEEEEecchhhhhhccchH-HHHHHHHHHHHhcCCeEEEEcCcchhh
Q 016911 243 KGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKWRGDSE-KLIKVLFELARHHAPSTIFLDEIDAII 314 (380)
Q Consensus 243 ~~vLL~GppGtGKT~la~ala~~l---~~~~v~v~~s~l~~~~~ge~e-~~l~~lf~~A~~~~p~ILfIDEiD~l~ 314 (380)
.+++|+||||||||++|+++++.+ +.+++.+++.++......... .....++..... +.+|+|||++...
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~lilDei~~~~ 128 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVPELFRELKHSLQDQTMNEKLDYIKK--VPVLMLDDLGAEA 128 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHHHHHHHHHHC---CCCHHHHHHHHH--SSEEEEEEECCC-
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhHHHHHHHHHHhccchHHHHHHHhcC--CCEEEEcCCCCCc
Confidence 789999999999999999999988 678888888877654332110 001222233232 4699999997654
No 89
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=98.80 E-value=5.9e-09 Score=94.99 Aligned_cols=127 Identities=14% Similarity=0.174 Sum_probs=78.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHh--------cC-CeEEEEecchhhhhhc----------cchHH--HHHHHHHHH--Hh
Q 016911 243 KGILLFGPPGTGKTMLAKAVATE--------CK-TTFFNISASSVVSKWR----------GDSEK--LIKVLFELA--RH 299 (380)
Q Consensus 243 ~~vLL~GppGtGKT~la~ala~~--------l~-~~~v~v~~s~l~~~~~----------ge~e~--~l~~lf~~A--~~ 299 (380)
..+|++|+||||||++|..++.. .+ .+++..++.++..... ..... ....++..+ ..
T Consensus 6 mi~l~tG~pGsGKT~~a~~~~~~~~~~~~~~~g~r~v~~~~~~gL~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~ 85 (199)
T 2r2a_A 6 EICLITGTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFTNIKGLKIPHTYIETDAKKLPKSTDEQLSAHDMYEWIKKPE 85 (199)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCGGGSCCTTSCCCCEEECCTTBCSCCEEEECCTTTCSSCCSSCEEGGGHHHHTTSGG
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhhcccccCceEEEEecCCCccccccccchhhhhccccCcccccHHHHHHHhhccc
Confidence 46789999999999999886443 23 6677777665543221 11100 012222321 12
Q ss_pred cCCeEEEEcCcchhhhhccccchhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCCCCCchHHHHhcccceeEecCCCC
Q 016911 300 HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRVSFSLIAL 379 (380)
Q Consensus 300 ~~p~ILfIDEiD~l~~~~~~~~~~~~~~~~i~~~Ll~~ldgl~~~~~~VlVIatTN~~~~Ld~aLlrRF~~~I~~plPd~ 379 (380)
..++||+|||++.+.+.+...... ..++..+.. .+...+-||.+|+.+..++.++++|++..++++.|..
T Consensus 86 ~~~~vliIDEAq~l~~~~~~~~e~--------~rll~~l~~--~r~~~~~iil~tq~~~~l~~~lr~ri~~~~~l~~~~~ 155 (199)
T 2r2a_A 86 NIGSIVIVDEAQDVWPARSAGSKI--------PENVQWLNT--HRHQGIDIFVLTQGPKLLDQNLRTLVRKHYHIASNKM 155 (199)
T ss_dssp GTTCEEEETTGGGTSBCCCTTCCC--------CHHHHGGGG--TTTTTCEEEEEESCGGGBCHHHHTTEEEEEEEEECSS
T ss_pred cCceEEEEEChhhhccCccccchh--------HHHHHHHHh--cCcCCeEEEEECCCHHHHhHHHHHHhheEEEEcCccc
Confidence 336899999999997654221111 014444432 2333456788898899999999999999999887653
No 90
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=98.71 E-value=5.3e-09 Score=104.18 Aligned_cols=143 Identities=23% Similarity=0.295 Sum_probs=88.2
Q ss_pred ccccchHHHHHHHHHHHhccccCcccccccCCCCceEEEEcCCCCcHHHHHHHHHHhc---CCeEEEEecchhhhhhc--
Q 016911 209 ESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKWR-- 283 (380)
Q Consensus 209 ~~l~Gl~~~k~~L~~~l~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~l---~~~~v~v~~s~l~~~~~-- 283 (380)
..++|.+...+.+.+.+.. .......++++|++||||+++|++++... +.+|+.++|+.+.....
T Consensus 137 ~~~ig~s~~m~~l~~~i~~----------~a~~~~~vli~Ge~GtGK~~lAr~ih~~s~r~~~~fv~v~~~~~~~~~~~~ 206 (387)
T 1ny5_A 137 EEYVFESPKMKEILEKIKK----------ISCAECPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDIFEA 206 (387)
T ss_dssp CCCCCCSHHHHHHHHHHHH----------HTTCCSCEEEECSTTSSHHHHHHHHHHHSTTTTSCEEEEETTTSCHHHHHH
T ss_pred hhhhhccHHhhHHHHHHHH----------hcCCCCCeEEecCCCcCHHHHHHHHHHhcCCCCCCeEEEecCCCCHHHHHH
Confidence 4567777666666655433 12344678999999999999999999877 47999999987643211
Q ss_pred -----------cchHHHHHHHHHHHHhcCCeEEEEcCcchhhhhccccchhhHHHHHHHHHHHHHhcC--------CccC
Q 016911 284 -----------GDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDG--------LTQS 344 (380)
Q Consensus 284 -----------ge~e~~l~~lf~~A~~~~p~ILfIDEiD~l~~~~~~~~~~~~~~~~i~~~Ll~~ldg--------l~~~ 344 (380)
|.... ....|+.|. +++||||||+.+... .+..|+..++. ....
T Consensus 207 elfg~~~g~~tga~~~-~~g~~~~a~---~gtlfldei~~l~~~-------------~q~~Ll~~l~~~~~~~~g~~~~~ 269 (387)
T 1ny5_A 207 ELFGYEKGAFTGAVSS-KEGFFELAD---GGTLFLDEIGELSLE-------------AQAKLLRVIESGKFYRLGGRKEI 269 (387)
T ss_dssp HHHCBCTTSSTTCCSC-BCCHHHHTT---TSEEEEESGGGCCHH-------------HHHHHHHHHHHSEECCBTCCSBE
T ss_pred HhcCCCCCCCCCcccc-cCCceeeCC---CcEEEEcChhhCCHH-------------HHHHHHHHHhcCcEEeCCCCcee
Confidence 11110 123444544 579999999998543 22234433321 1222
Q ss_pred CCcEEEEEEeCCCC-------CchHHHHhcccceeEecCCCC
Q 016911 345 DELVFVLAATNLPW-------ELDAAMLRRLEKRVSFSLIAL 379 (380)
Q Consensus 345 ~~~VlVIatTN~~~-------~Ld~aLlrRF~~~I~~plPd~ 379 (380)
..++.+|+|||..- .+.+.|..|+. .+.+.+|.+
T Consensus 270 ~~~~rii~at~~~l~~~~~~g~fr~dl~~rl~-~~~i~lPpL 310 (387)
T 1ny5_A 270 EVNVRILAATNRNIKELVKEGKFREDLYYRLG-VIEIEIPPL 310 (387)
T ss_dssp ECCCEEEEEESSCHHHHHHTTSSCHHHHHHHT-TEEEECCCG
T ss_pred eccEEEEEeCCCCHHHHHHcCCccHHHHHhhc-CCeecCCcc
Confidence 24578999999731 23445555653 345666654
No 91
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=98.70 E-value=1.4e-08 Score=98.07 Aligned_cols=71 Identities=24% Similarity=0.305 Sum_probs=47.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhcC----CeEEEEecchhhhhhccch-HHHHHHHHHHHHhcCCeEEEEcCcchhh
Q 016911 242 WKGILLFGPPGTGKTMLAKAVATECK----TTFFNISASSVVSKWRGDS-EKLIKVLFELARHHAPSTIFLDEIDAII 314 (380)
Q Consensus 242 ~~~vLL~GppGtGKT~la~ala~~l~----~~~v~v~~s~l~~~~~ge~-e~~l~~lf~~A~~~~p~ILfIDEiD~l~ 314 (380)
..+++|+||||||||+||.++|..+. .+++.++++++........ .......+.... ...+|+|||++...
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~~l~~~l~~~~~~~~~~~~~~~~~--~~~lLiiDdig~~~ 227 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFPSFAIDVKNAISNGSVKEEIDAVK--NVPVLILDDIGAEQ 227 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHHHHHHHHHCCCC----CCTTHHHH--TSSEEEEETCCC--
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHHHHHHHHHHHhccchHHHHHHHhc--CCCEEEEcCCCCCC
Confidence 57999999999999999999998664 6788888887766543321 111112222222 24699999997653
No 92
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=98.65 E-value=2e-08 Score=98.08 Aligned_cols=77 Identities=16% Similarity=0.232 Sum_probs=51.4
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHhcCCe--EEEEecchhhhhhccchHHHHHHHHHHHHhcCCeEEEEcCcchhhhh
Q 016911 239 LSPWKGILLFGPPGTGKTMLAKAVATECKTT--FFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQ 316 (380)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~la~ala~~l~~~--~v~v~~s~l~~~~~ge~e~~l~~lf~~A~~~~p~ILfIDEiD~l~~~ 316 (380)
+.++..++|+||||+|||+||.++|...+.+ |+.+...+....+....+..+..+.+...... +|+||+++.+...
T Consensus 120 i~~gsviLI~GpPGsGKTtLAlqlA~~~G~~VlyIs~~~eE~v~~~~~~le~~l~~i~~~l~~~~--LLVIDsI~aL~~~ 197 (331)
T 2vhj_A 120 RYASGMVIVTGKGNSGKTPLVHALGEALGGKDKYATVRFGEPLSGYNTDFNVFVDDIARAMLQHR--VIVIDSLKNVIGA 197 (331)
T ss_dssp EEESEEEEEECSCSSSHHHHHHHHHHHHHTTSCCEEEEBSCSSTTCBCCHHHHHHHHHHHHHHCS--EEEEECCTTTC--
T ss_pred CCCCcEEEEEcCCCCCHHHHHHHHHHhCCCCEEEEEecchhhhhhhhcCHHHHHHHHHHHHhhCC--EEEEecccccccc
Confidence 4455678999999999999999999865433 55552233333333455666666666665544 9999999998654
Q ss_pred c
Q 016911 317 R 317 (380)
Q Consensus 317 ~ 317 (380)
.
T Consensus 198 ~ 198 (331)
T 2vhj_A 198 A 198 (331)
T ss_dssp -
T ss_pred c
Confidence 3
No 93
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=98.56 E-value=1.4e-07 Score=93.27 Aligned_cols=143 Identities=22% Similarity=0.277 Sum_probs=86.4
Q ss_pred ccccchHHHHHHHHHHHhccccCcccccccCCCCceEEEEcCCCCcHHHHHHHHHHhcCC--eEEEEecchhhhhhc---
Q 016911 209 ESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKT--TFFNISASSVVSKWR--- 283 (380)
Q Consensus 209 ~~l~Gl~~~k~~L~~~l~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~l~~--~~v~v~~s~l~~~~~--- 283 (380)
..++|.+.....+.+.+... ......++++|++||||+++|++++...+. .|+.++|+.+.....
T Consensus 129 ~~~ig~s~~~~~~~~~~~~~----------a~~~~~vli~GesGtGKe~lAr~ih~~s~r~~~fv~vnc~~~~~~~~~~~ 198 (368)
T 3dzd_A 129 IEFVGEHPKILEIKRLIPKI----------AKSKAPVLITGESGTGKEIVARLIHRYSGRKGAFVDLNCASIPQELAESE 198 (368)
T ss_dssp CCCCCCSHHHHHHHHHHHHH----------HTSCSCEEEECCTTSSHHHHHHHHHHHHCCCSCEEEEESSSSCTTTHHHH
T ss_pred ccccccchHHHHHHhhhhhh----------hccchhheEEeCCCchHHHHHHHHHHhccccCCcEEEEcccCChHHHHHH
Confidence 45778777776666554321 123457999999999999999999987743 399999987633211
Q ss_pred ----------cchHHHHHHHHHHHHhcCCeEEEEcCcchhhhhccccchhhHHHHHHHHHHHHHhcCC--------ccCC
Q 016911 284 ----------GDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGL--------TQSD 345 (380)
Q Consensus 284 ----------ge~e~~l~~lf~~A~~~~p~ILfIDEiD~l~~~~~~~~~~~~~~~~i~~~Ll~~ldgl--------~~~~ 345 (380)
|... .....|+.|. +++||||||+.+... .+..|+..++.- ....
T Consensus 199 lfg~~~g~~tga~~-~~~g~~~~a~---~gtlfldei~~l~~~-------------~Q~~Ll~~l~~~~~~~~g~~~~~~ 261 (368)
T 3dzd_A 199 LFGHEKGAFTGALT-RKKGKLELAD---QGTLFLDEVGELDQR-------------VQAKLLRVLETGSFTRLGGNQKIE 261 (368)
T ss_dssp HHEECSCSSSSCCC-CEECHHHHTT---TSEEEEETGGGSCHH-------------HHHHHHHHHHHSEECCBTCCCBEE
T ss_pred hcCccccccCCccc-ccCChHhhcC---CCeEEecChhhCCHH-------------HHHHHHHHHHhCCcccCCCCccee
Confidence 1000 0112344444 579999999998543 233344444311 1112
Q ss_pred CcEEEEEEeCCCC-------CchHHHHhcccceeEecCCCC
Q 016911 346 ELVFVLAATNLPW-------ELDAAMLRRLEKRVSFSLIAL 379 (380)
Q Consensus 346 ~~VlVIatTN~~~-------~Ld~aLlrRF~~~I~~plPd~ 379 (380)
-++.+|++||..- .+.+.|..|+. .+.+.+|.+
T Consensus 262 ~~~rii~at~~~l~~~v~~g~fr~dL~~rl~-~~~i~lPpL 301 (368)
T 3dzd_A 262 VDIRVISATNKNLEEEIKKGNFREDLYYRLS-VFQIYLPPL 301 (368)
T ss_dssp CCCEEEEEESSCHHHHHHTTSSCHHHHHHHT-SEEEECCCG
T ss_pred eeeEEEEecCCCHHHHHHcCCccHHHHHHhC-CeEEeCCCh
Confidence 2477899999731 13345555653 455666654
No 94
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=98.54 E-value=1.1e-07 Score=87.35 Aligned_cols=109 Identities=17% Similarity=0.203 Sum_probs=62.8
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhcCCeEEEEecchhhhhhccchHHHHHHHHHHHHhcCCeEEEEcCcchhhhhccccc
Q 016911 242 WKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEAR 321 (380)
Q Consensus 242 ~~~vLL~GppGtGKT~la~ala~~l~~~~v~v~~s~l~~~~~ge~e~~l~~lf~~A~~~~p~ILfIDEiD~l~~~~~~~~ 321 (380)
.++++++||||||||++|.++|+.+...++.+..+.. ..+ +..+ ....|++|||+|.-.
T Consensus 58 kn~ili~GPPGtGKTt~a~ala~~l~g~i~~fans~s-~f~-----------l~~l--~~~kIiiLDEad~~~------- 116 (212)
T 1tue_A 58 KNCLVFCGPANTGKSYFGMSFIHFIQGAVISFVNSTS-HFW-----------LEPL--TDTKVAMLDDATTTC------- 116 (212)
T ss_dssp CSEEEEESCGGGCHHHHHHHHHHHHTCEECCCCCSSS-CGG-----------GGGG--TTCSSEEEEEECHHH-------
T ss_pred ccEEEEECCCCCCHHHHHHHHHHHhCCCeeeEEeccc-hhh-----------hccc--CCCCEEEEECCCchh-------
Confidence 4679999999999999999999998765433211100 000 0111 123599999998421
Q ss_pred hhhHHHHHHHHHHHHHhcCCc----c-CC-----CcEEEEEEeCCCC---CchHHHHhcccceeEecCC
Q 016911 322 SEHEASRRLKTELLIQMDGLT----Q-SD-----ELVFVLAATNLPW---ELDAAMLRRLEKRVSFSLI 377 (380)
Q Consensus 322 ~~~~~~~~i~~~Ll~~ldgl~----~-~~-----~~VlVIatTN~~~---~Ld~aLlrRF~~~I~~plP 377 (380)
.+.+...+...+||.. . .. ....+|.|||..- .--+.|.+|+. .+.|+.|
T Consensus 117 -----~~~~d~~lrn~ldG~~~~iD~Khr~~~~~~~~PlIITtN~~~~~~~~~~~L~SRi~-~f~F~~~ 179 (212)
T 1tue_A 117 -----WTYFDTYMRNALDGNPISIDRKHKPLIQLKCPPILLTTNIHPAKDNRWPYLESRIT-VFEFPNA 179 (212)
T ss_dssp -----HHHHHHHCHHHHHTCCEEEC----CCEEECCCCEEEEESSCTTSSSSCHHHHTSCE-EEECCSC
T ss_pred -----HHHHHHHHHHHhCCCcccHHHhhcCccccCCCCEEEecCCCcccccchhhhhhhEE-EEEcCCC
Confidence 1222334455555531 0 10 1124677999842 23367888884 5666643
No 95
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=98.45 E-value=1.7e-07 Score=95.58 Aligned_cols=136 Identities=20% Similarity=0.178 Sum_probs=81.1
Q ss_pred ccchHHHHHHHHHHHhccccCcccccccCCCCceEEEEcCCCCcHHHHHHHH-HHhcCCeEEEEecc----hhhhhhccc
Q 016911 211 IKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAV-ATECKTTFFNISAS----SVVSKWRGD 285 (380)
Q Consensus 211 l~Gl~~~k~~L~~~l~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~la~al-a~~l~~~~v~v~~s----~l~~~~~ge 285 (380)
|.|++.+|+.+.-.+..-.. + .....++||.|+||+ ||++|+++ +..+....+..... .+.....+.
T Consensus 215 I~G~e~vK~aLll~L~GG~~--k-----~rgdihVLL~G~PGt-KS~Lar~i~~~i~pR~~ft~g~~ss~~gLt~s~r~~ 286 (506)
T 3f8t_A 215 LPGAEEVGKMLALQLFSCVG--K-----NSERLHVLLAGYPVV-CSEILHHVLDHLAPRGVYVDLRRTELTDLTAVLKED 286 (506)
T ss_dssp STTCHHHHHHHHHHHTTCCS--S-----GGGCCCEEEESCHHH-HHHHHHHHHHHTCSSEEEEEGGGCCHHHHSEEEEES
T ss_pred cCCCHHHHHHHHHHHcCCcc--c-----cCCceeEEEECCCCh-HHHHHHHHHHHhCCCeEEecCCCCCccCceEEEEcC
Confidence 88999988777754422110 0 122348999999999 99999999 88775544432211 111110000
Q ss_pred h-HHHHHHHHHHHHhcCCeEEEEcCcchhhhhccccchhhHHHHHHHHHHHHHhc-------CCccCCCcEEEEEEeCCC
Q 016911 286 S-EKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMD-------GLTQSDELVFVLAATNLP 357 (380)
Q Consensus 286 ~-e~~l~~lf~~A~~~~p~ILfIDEiD~l~~~~~~~~~~~~~~~~i~~~Ll~~ld-------gl~~~~~~VlVIatTN~~ 357 (380)
+ -..-...+..|. .+|+|+||++.+.++ .+..|+..|+ |. ..+.++.||||+|..
T Consensus 287 tG~~~~~G~l~LAd---gGvl~lDEIn~~~~~-------------~qsaLlEaMEe~~VtI~G~-~lparf~VIAA~NP~ 349 (506)
T 3f8t_A 287 RGWALRAGAAVLAD---GGILAVDHLEGAPEP-------------HRWALMEAMDKGTVTVDGI-ALNARCAVLAAINPG 349 (506)
T ss_dssp SSEEEEECHHHHTT---TSEEEEECCTTCCHH-------------HHHHHHHHHHHSEEEETTE-EEECCCEEEEEECCC
T ss_pred CCcccCCCeeEEcC---CCeeehHhhhhCCHH-------------HHHHHHHHHhCCcEEECCE-EcCCCeEEEEEeCcc
Confidence 0 000011233333 479999999988543 2233444433 33 334567899999987
Q ss_pred C-----------CchHHHHhcccce
Q 016911 358 W-----------ELDAAMLRRLEKR 371 (380)
Q Consensus 358 ~-----------~Ld~aLlrRF~~~ 371 (380)
+ .|++++++||+..
T Consensus 350 ~~yd~~~s~~~~~Lp~alLDRFDLi 374 (506)
T 3f8t_A 350 EQWPSDPPIARIDLDQDFLSHFDLI 374 (506)
T ss_dssp C--CCSCGGGGCCSCHHHHTTCSEE
T ss_pred cccCCCCCccccCCChHHhhheeeE
Confidence 5 7899999999653
No 96
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=98.43 E-value=1.1e-06 Score=84.03 Aligned_cols=58 Identities=19% Similarity=0.197 Sum_probs=45.9
Q ss_pred CCCccccccchHHHHHHHHHHHhccccCcccccccCCCCceEEEEcCCCCcHHHHHHHHHHhcCCeEEEEecch
Q 016911 204 PDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASS 277 (380)
Q Consensus 204 p~~~~~~l~Gl~~~k~~L~~~l~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~l~~~~v~v~~s~ 277 (380)
+....+.++|.++.++.|.+ +.. ..++++||+|+|||+|++.+++..+...+.+++..
T Consensus 8 ~~~~~~~~~gR~~el~~L~~-l~~---------------~~v~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~ 65 (357)
T 2fna_A 8 PKDNRKDFFDREKEIEKLKG-LRA---------------PITLVLGLRRTGKSSIIKIGINELNLPYIYLDLRK 65 (357)
T ss_dssp CCCSGGGSCCCHHHHHHHHH-TCS---------------SEEEEEESTTSSHHHHHHHHHHHHTCCEEEEEGGG
T ss_pred CCCCHHHhcChHHHHHHHHH-hcC---------------CcEEEECCCCCCHHHHHHHHHHhcCCCEEEEEchh
Confidence 34455778999988888776 521 48999999999999999999998876677777654
No 97
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=98.42 E-value=3.1e-06 Score=80.68 Aligned_cols=58 Identities=28% Similarity=0.307 Sum_probs=45.5
Q ss_pred CCCccccccchHHHHHHHHHHHhccccCcccccccCCCCceEEEEcCCCCcHHHHHHHHHHhcCCeEEEEecch
Q 016911 204 PDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASS 277 (380)
Q Consensus 204 p~~~~~~l~Gl~~~k~~L~~~l~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~l~~~~v~v~~s~ 277 (380)
+...-+.++|.+..++.|.+.+.. +..++++||+|+|||++++.+++..+ .+.+++..
T Consensus 7 ~~~~~~~~~gR~~el~~L~~~l~~--------------~~~v~i~G~~G~GKT~Ll~~~~~~~~--~~~~~~~~ 64 (350)
T 2qen_A 7 PKTRREDIFDREEESRKLEESLEN--------------YPLTLLLGIRRVGKSSLLRAFLNERP--GILIDCRE 64 (350)
T ss_dssp CCCSGGGSCSCHHHHHHHHHHHHH--------------CSEEEEECCTTSSHHHHHHHHHHHSS--EEEEEHHH
T ss_pred CCCChHhcCChHHHHHHHHHHHhc--------------CCeEEEECCCcCCHHHHHHHHHHHcC--cEEEEeec
Confidence 344456789999999888876632 15899999999999999999999886 56666643
No 98
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=98.33 E-value=1.1e-06 Score=102.64 Aligned_cols=118 Identities=20% Similarity=0.270 Sum_probs=77.1
Q ss_pred cCCCCceEEEEcCCCCcHHHHHHHHHHhc---CCeEEEEecchhh----hhhc------------cchHHHHHHHHHHHH
Q 016911 238 LLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVV----SKWR------------GDSEKLIKVLFELAR 298 (380)
Q Consensus 238 ~~~~~~~vLL~GppGtGKT~la~ala~~l---~~~~v~v~~s~l~----~~~~------------ge~e~~l~~lf~~A~ 298 (380)
++.++.+++|+||||||||+||.+++.+. +.....++..+.. .... ...++.++.++..++
T Consensus 1423 Gi~~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~~~~~l~a~~~G~dl~~l~v~~~~~~E~~l~~~~~lvr 1502 (2050)
T 3cmu_A 1423 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 1502 (2050)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEcccccCHHHHHHcCCCchhceeecCChHHHHHHHHHHHHh
Confidence 35678999999999999999999997765 5566666655332 1111 244567777788888
Q ss_pred hcCCeEEEEcCcchhhhhcc---c-cchhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCCC
Q 016911 299 HHAPSTIFLDEIDAIISQRG---E-ARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLP 357 (380)
Q Consensus 299 ~~~p~ILfIDEiD~l~~~~~---~-~~~~~~~~~~i~~~Ll~~ldgl~~~~~~VlVIatTN~~ 357 (380)
..+|++|+|||++.+.+... . ..+......+++.+++.+|.+.....+ ++|| +||..
T Consensus 1503 ~~~~~lVVIDsi~al~p~~~~~g~~~~~~~~~~~R~lsqlL~~L~~~~~~~~-v~VI-~tNq~ 1563 (2050)
T 3cmu_A 1503 SGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSN-TLLI-FINQI 1563 (2050)
T ss_dssp HTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTT-CEEE-EEECE
T ss_pred cCCCCEEEEcChhHhcccccccccccccccchHHHHHHHHHHHHHHHHHhCC-cEEE-EEccc
Confidence 88999999999998876421 1 111111234566667777766543333 4444 56544
No 99
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=98.32 E-value=2.1e-06 Score=103.01 Aligned_cols=124 Identities=17% Similarity=0.121 Sum_probs=82.6
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhcCCeEEEEecchhhhhhccchHHHHHHHHHHHHhcCCeEEEEcCcchhhhhccccc
Q 016911 242 WKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEAR 321 (380)
Q Consensus 242 ~~~vLL~GppGtGKT~la~ala~~l~~~~v~v~~s~l~~~~~ge~e~~l~~lf~~A~~~~p~ILfIDEiD~l~~~~~~~~ 321 (380)
..+.++.||+|||||++++++|+.++.+++.++|++-+.. ..+..+|..+... ++.+++||++.+.++--
T Consensus 645 ~~~~~l~GpaGtGKTe~vk~LA~~lg~~~v~~nc~e~ld~------~~lg~~~~g~~~~-Gaw~~~DE~nr~~~evL--- 714 (2695)
T 4akg_A 645 KYGGCFFGPAGTGKTETVKAFGQNLGRVVVVFNCDDSFDY------QVLSRLLVGITQI-GAWGCFDEFNRLDEKVL--- 714 (2695)
T ss_dssp TCEEEEECCTTSCHHHHHHHHHHTTTCCCEEEETTSSCCH------HHHHHHHHHHHHH-TCEEEEETTTSSCHHHH---
T ss_pred CCCCcccCCCCCCcHHHHHHHHHHhCCcEEEEECCCCCCh------hHhhHHHHHHHhc-CCEeeehhhhhcChHHH---
Confidence 3688999999999999999999999999999999875432 3334455544443 57999999998754211
Q ss_pred hhhHHHHHHHHHHHHHhcC----Cc------cCCCcEEEEEEeCC----CCCchHHHHhcccceeEecCCCC
Q 016911 322 SEHEASRRLKTELLIQMDG----LT------QSDELVFVLAATNL----PWELDAAMLRRLEKRVSFSLIAL 379 (380)
Q Consensus 322 ~~~~~~~~i~~~Ll~~ldg----l~------~~~~~VlVIatTN~----~~~Ld~aLlrRF~~~I~~plPd~ 379 (380)
. .....+..+...+.. +. .-.....|++|.|. ...|++++++||. .+.+..||.
T Consensus 715 --s-~l~~~l~~i~~al~~~~~~i~~~g~~i~l~~~~~vfiT~NPgy~g~~eLP~~Lk~~Fr-~v~m~~Pd~ 782 (2695)
T 4akg_A 715 --S-AVSANIQQIQNGLQVGKSHITLLEEETPLSPHTAVFITLNPGYNGRSELPENLKKSFR-EFSMKSPQS 782 (2695)
T ss_dssp --H-HHHHHHHHHHHHHHHTCSEEECSSSEEECCTTCEEEEEECCCSSSSCCCCHHHHTTEE-EEECCCCCH
T ss_pred --H-HHHHHHHHHHHHHHcCCcEEeeCCcEEecCCCceEEEEeCCCccCcccccHHHHhheE-EEEeeCCCH
Confidence 1 111111222222210 10 11234567888884 3469999999994 688888874
No 100
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=98.14 E-value=1.4e-05 Score=70.94 Aligned_cols=27 Identities=33% Similarity=0.540 Sum_probs=23.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcCCeE
Q 016911 244 GILLFGPPGTGKTMLAKAVATECKTTF 270 (380)
Q Consensus 244 ~vLL~GppGtGKT~la~ala~~l~~~~ 270 (380)
.+.|.||+|+|||||++.+++.++..+
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i~~ 28 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGKRA 28 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcC
Confidence 578999999999999999999875443
No 101
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=98.03 E-value=2.9e-05 Score=69.57 Aligned_cols=37 Identities=24% Similarity=0.272 Sum_probs=28.7
Q ss_pred cCCCCceEEEEcCCCCcHHHHHHHHHHhc---CCeEEEEe
Q 016911 238 LLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNIS 274 (380)
Q Consensus 238 ~~~~~~~vLL~GppGtGKT~la~ala~~l---~~~~v~v~ 274 (380)
.+.++..++|.||||+||||+++.++..+ +..++.++
T Consensus 19 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~ 58 (235)
T 2w0m_A 19 GIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVT 58 (235)
T ss_dssp SEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred CCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 35667789999999999999999998654 44555444
No 102
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=98.03 E-value=6.8e-06 Score=99.48 Aligned_cols=127 Identities=20% Similarity=0.278 Sum_probs=78.3
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHh-cCCeEEEEecchhhhhhccchHHHHHHHHHHH----H------------hcCCe
Q 016911 241 PWKGILLFGPPGTGKTMLAKAVATE-CKTTFFNISASSVVSKWRGDSEKLIKVLFELA----R------------HHAPS 303 (380)
Q Consensus 241 ~~~~vLL~GppGtGKT~la~ala~~-l~~~~v~v~~s~l~~~~~ge~e~~l~~lf~~A----~------------~~~p~ 303 (380)
.++++||+||||||||+++...... .+.+++.++++.-... ..+...++.. . ..+..
T Consensus 1303 ~~~pvLL~GptGtGKT~li~~~L~~l~~~~~~~infS~~Tta------~~l~~~~e~~~e~~~~~~~G~~~~p~~~Gk~~ 1376 (3245)
T 3vkg_A 1303 EHRPLILCGPPGSGKTMTLTSTLRAFPDFEVVSLNFSSATTP------ELLLKTFDHHCEYKRTPSGETVLRPTQLGKWL 1376 (3245)
T ss_dssp TTCCCEEESSTTSSHHHHHHHHGGGCTTEEEEEECCCTTCCH------HHHHHHHHHHEEEEECTTSCEEEEESSTTCEE
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHhCCCCceEEEEeeCCCCH------HHHHHHHhhcceEEeccCCCcccCCCcCCceE
Confidence 4578999999999999877554444 4667888888764321 2222222210 0 01125
Q ss_pred EEEEcCcchhhhhccccchhhHHHHHHHHHHHHHhcCCccC-------CCcEEEEEEeCCCC-----CchHHHHhcccce
Q 016911 304 TIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQS-------DELVFVLAATNLPW-----ELDAAMLRRLEKR 371 (380)
Q Consensus 304 ILfIDEiD~l~~~~~~~~~~~~~~~~i~~~Ll~~ldgl~~~-------~~~VlVIatTN~~~-----~Ld~aLlrRF~~~ 371 (380)
|+||||++.-..+..+.+...+ ++.+++.. .++... -.++.+|||+|.+. .+++.++|||. .
T Consensus 1377 VlFiDDiNmp~~D~yGtQ~~ie----lLrqlld~-~g~yd~~~~~~~~i~d~~~vaamnPp~~gGr~~l~~Rf~r~F~-v 1450 (3245)
T 3vkg_A 1377 VVFCDEINLPSTDKYGTQRVIT----FIRQMVEK-GGFWRTSDHTWIKLDKIQFVGACNPPTDAGRVQLTHRFLRHAP-I 1450 (3245)
T ss_dssp EEEETTTTCCCCCTTSCCHHHH----HHHHHHHH-SEEEETTTTEEEEESSEEEEEEECCTTSTTCCCCCHHHHTTCC-E
T ss_pred EEEecccCCCCccccccccHHH----HHHHHHHc-CCeEECCCCeEEEecCeEEEEEcCCCCCCCCccCCHHHHhhce-E
Confidence 9999999875544443333222 33333332 122111 14578999999884 49999999996 4
Q ss_pred eEecCCCC
Q 016911 372 VSFSLIAL 379 (380)
Q Consensus 372 I~~plPd~ 379 (380)
+.++.|+.
T Consensus 1451 i~i~~ps~ 1458 (3245)
T 3vkg_A 1451 LLVDFPST 1458 (3245)
T ss_dssp EECCCCCH
T ss_pred EEeCCCCH
Confidence 88888863
No 103
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=98.02 E-value=4.2e-05 Score=68.31 Aligned_cols=41 Identities=22% Similarity=0.271 Sum_probs=33.2
Q ss_pred ccCCCCceEEEEcCCCCcHHHHHHHHHHhcCCeEEEEecch
Q 016911 237 GLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASS 277 (380)
Q Consensus 237 ~~~~~~~~vLL~GppGtGKT~la~ala~~l~~~~v~v~~s~ 277 (380)
+.+.++..++|.||||+|||++++.++...+.+.+.++...
T Consensus 15 Ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~v~~i~~~~ 55 (220)
T 2cvh_A 15 GGFAPGVLTQVYGPYASGKTTLALQTGLLSGKKVAYVDTEG 55 (220)
T ss_dssp SSBCTTSEEEEECSTTSSHHHHHHHHHHHHCSEEEEEESSC
T ss_pred CCCcCCEEEEEECCCCCCHHHHHHHHHHHcCCcEEEEECCC
Confidence 34677788999999999999999999985566777776543
No 104
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.96 E-value=2.7e-05 Score=70.68 Aligned_cols=79 Identities=16% Similarity=0.211 Sum_probs=51.1
Q ss_pred ccCCCCceEEEEcCCCCcHHHHHHHHHHh--c-------CCeEEEEecchh--hh------hhcc---------------
Q 016911 237 GLLSPWKGILLFGPPGTGKTMLAKAVATE--C-------KTTFFNISASSV--VS------KWRG--------------- 284 (380)
Q Consensus 237 ~~~~~~~~vLL~GppGtGKT~la~ala~~--l-------~~~~v~v~~s~l--~~------~~~g--------------- 284 (380)
+.+.++..++|+||||+|||++++.++.. + +...+.++.... .. ...+
T Consensus 19 ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 98 (243)
T 1n0w_A 19 GGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARA 98 (243)
T ss_dssp TSEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEEC
T ss_pred CCCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHHcCCCHHHHhhCeEEEec
Confidence 34567788999999999999999999984 3 446666665431 00 0000
Q ss_pred -chH---HHHHHHHHHHHhcCCeEEEEcCcchhhh
Q 016911 285 -DSE---KLIKVLFELARHHAPSTIFLDEIDAIIS 315 (380)
Q Consensus 285 -e~e---~~l~~lf~~A~~~~p~ILfIDEiD~l~~ 315 (380)
..+ ..+..+........|.+|+|||+..+..
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~ 133 (243)
T 1n0w_A 99 FNTDHQTQLLYQASAMMVESRYALLIVDSATALYR 133 (243)
T ss_dssp CSHHHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC
T ss_pred CCHHHHHHHHHHHHHHHhcCCceEEEEeCchHHHH
Confidence 011 1122334444456789999999988764
No 105
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=97.94 E-value=3.5e-06 Score=80.07 Aligned_cols=27 Identities=44% Similarity=0.612 Sum_probs=24.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhcCC
Q 016911 242 WKGILLFGPPGTGKTMLAKAVATECKT 268 (380)
Q Consensus 242 ~~~vLL~GppGtGKT~la~ala~~l~~ 268 (380)
..+++|+||||||||++|.++|+.+..
T Consensus 104 ~n~~~l~GppgtGKt~~a~ala~~~~l 130 (267)
T 1u0j_A 104 RNTIWLFGPATTGKTNIAEAIAHTVPF 130 (267)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHSSC
T ss_pred CcEEEEECCCCCCHHHHHHHHHhhhcc
Confidence 468999999999999999999997643
No 106
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=97.93 E-value=4e-06 Score=83.43 Aligned_cols=101 Identities=20% Similarity=0.162 Sum_probs=59.4
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHhcCCeEEEEecchhhhhhccchHHHHHHHHHHHHhcCCeEEEEcCcchhhh-hc
Q 016911 239 LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIIS-QR 317 (380)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~la~ala~~l~~~~v~v~~s~l~~~~~ge~e~~l~~lf~~A~~~~p~ILfIDEiD~l~~-~~ 317 (380)
+.++..++|+||||+||||+++++++.++..++.+....-. .. +.........++++||++.+.. .+
T Consensus 166 i~~~~~i~l~G~~GsGKSTl~~~l~~~~~g~~~~~~~~~~~------~~------~~lg~~~q~~~~l~dd~~~~~~~~r 233 (377)
T 1svm_A 166 IPKKRYWLFKGPIDSGKTTLAAALLELCGGKALNVNLPLDR------LN------FELGVAIDQFLVVFEDVKGTGGESR 233 (377)
T ss_dssp CTTCCEEEEECSTTSSHHHHHHHHHHHHCCEEECCSSCTTT------HH------HHHGGGTTCSCEEETTCCCSTTTTT
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhhcCCcEEEEeccchh------HH------HHHHHhcchhHHHHHHHHHHHHHHh
Confidence 56778999999999999999999999887766554332210 00 1111222345789999998865 22
Q ss_pred cccchhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCCCCCc
Q 016911 318 GEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWEL 360 (380)
Q Consensus 318 ~~~~~~~~~~~~i~~~Ll~~ldgl~~~~~~VlVIatTN~~~~L 360 (380)
......... ....+...++|. +.|+.++|+++.+
T Consensus 234 ~l~~~~~~~---~~~~l~~~ldG~------v~v~~~tn~~~~l 267 (377)
T 1svm_A 234 DLPSGQGIN---NLDNLRDYLDGS------VKVNLEKKHLNKR 267 (377)
T ss_dssp TCCCCSHHH---HHHTTHHHHHCS------SCEEECCSSSCCE
T ss_pred hccccCcch---HHHHHHHHhcCC------CeEeeccCchhhH
Confidence 111111100 122344445542 3456777777765
No 107
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.89 E-value=0.00013 Score=66.18 Aligned_cols=27 Identities=37% Similarity=0.458 Sum_probs=24.0
Q ss_pred ccCCCCceEEEEcCCCCcHHHHHHHHH
Q 016911 237 GLLSPWKGILLFGPPGTGKTMLAKAVA 263 (380)
Q Consensus 237 ~~~~~~~~vLL~GppGtGKT~la~ala 263 (380)
+.+.++..+.|.||+|+|||||++.++
T Consensus 25 Ggi~~G~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 25 GGFPEGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp TSEETTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCCCcEEEEEeCCCCCHHHHHHHHH
Confidence 345777889999999999999999998
No 108
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.84 E-value=5e-05 Score=68.18 Aligned_cols=30 Identities=33% Similarity=0.386 Sum_probs=25.8
Q ss_pred ccCCCCceEEEEcCCCCcHHHHHHHHHHhc
Q 016911 237 GLLSPWKGILLFGPPGTGKTMLAKAVATEC 266 (380)
Q Consensus 237 ~~~~~~~~vLL~GppGtGKT~la~ala~~l 266 (380)
+.+.++..+.|.||+|+||||+++.++...
T Consensus 20 ggi~~G~~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 20 GGIETQAITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp SSEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 345677889999999999999999999843
No 109
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=97.78 E-value=7.9e-05 Score=90.40 Aligned_cols=126 Identities=14% Similarity=0.135 Sum_probs=80.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhcCCeEEEEecchhhhhhccchHHHHHHHHHHHHhcCCeEEEEcCcchhhhhccccch
Q 016911 243 KGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARS 322 (380)
Q Consensus 243 ~~vLL~GppGtGKT~la~ala~~l~~~~v~v~~s~l~~~~~ge~e~~l~~lf~~A~~~~p~ILfIDEiD~l~~~~~~~~~ 322 (380)
.+..+.||+|||||.+++.+|+.++.+++.++|++-... ..+..+|.-+-.. ++-.++||++.+-.+--. .
T Consensus 605 ~gg~~~GPaGtGKTet~k~La~~lgr~~~vfnC~~~~d~------~~~g~i~~G~~~~-GaW~cfDEfNrl~~~vLS--v 675 (3245)
T 3vkg_A 605 MGGNPFGPAGTGKTETVKALGSQLGRFVLVFCCDEGFDL------QAMSRIFVGLCQC-GAWGCFDEFNRLEERILS--A 675 (3245)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHTTCCEEEEECSSCCCH------HHHHHHHHHHHHH-TCEEEEETTTSSCHHHHH--H
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHhCCeEEEEeCCCCCCH------HHHHHHHhhHhhc-CcEEEehhhhcCCHHHHH--H
Confidence 567899999999999999999999999999999875432 2333444433332 579999999987432110 0
Q ss_pred hhHHHHHHHHHHHHH-----hc-C--CccCCCcEEEEEEeCC----CCCchHHHHhcccceeEecCCCC
Q 016911 323 EHEASRRLKTELLIQ-----MD-G--LTQSDELVFVLAATNL----PWELDAAMLRRLEKRVSFSLIAL 379 (380)
Q Consensus 323 ~~~~~~~i~~~Ll~~-----ld-g--l~~~~~~VlVIatTN~----~~~Ld~aLlrRF~~~I~~plPd~ 379 (380)
-......+...+... +. | +.. .....|++|.|. ...|++.+++||.. +.+..||+
T Consensus 676 v~~qi~~I~~a~~~~~~~~~~~~G~~i~l-~~~~~vfiTmNpgY~gr~eLP~nLk~lFr~-v~m~~Pd~ 742 (3245)
T 3vkg_A 676 VSQQIQTIQVALKENSKEVELLGGKNISL-HQDMGIFVTMNPGYAGRSNLPDNLKKLFRS-MAMIKPDR 742 (3245)
T ss_dssp HHHHHHHHHHHHHHTCSEECCC---CEEC-CTTCEEEECBCCCGGGCCCSCHHHHTTEEE-EECCSCCH
T ss_pred HHHHHHHHHHHHHcCCCeEEecCCCEEee-cCCeEEEEEeCCCccCcccChHHHHhhcEE-EEEeCCCH
Confidence 011111122222221 11 1 111 233567888884 34799999999954 89999985
No 110
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.76 E-value=6.8e-05 Score=73.98 Aligned_cols=79 Identities=23% Similarity=0.288 Sum_probs=53.2
Q ss_pred ccCCCCceEEEEcCCCCcHHHHHHHHHHhc---CCeEEEEecchhhhh----------------hccchHHHHHHHHHHH
Q 016911 237 GLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSK----------------WRGDSEKLIKVLFELA 297 (380)
Q Consensus 237 ~~~~~~~~vLL~GppGtGKT~la~ala~~l---~~~~v~v~~s~l~~~----------------~~ge~e~~l~~lf~~A 297 (380)
+.+.++..++|+||||+|||||+..++..+ +..+++++....... .....+..+..+....
T Consensus 56 GGi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~~~ra~rlgv~~~~l~i~~~~~~e~~l~~~~~l~ 135 (356)
T 3hr8_A 56 GGYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALDPVYAKNLGVDLKSLLISQPDHGEQALEIVDELV 135 (356)
T ss_dssp SSEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHHTCCGGGCEEECCSSHHHHHHHHHHHH
T ss_pred CCccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccchHHHHHcCCchhhhhhhhccCHHHHHHHHHHHh
Confidence 346677889999999999999999998765 556666666432110 0112333333333344
Q ss_pred HhcCCeEEEEcCcchhhh
Q 016911 298 RHHAPSTIFLDEIDAIIS 315 (380)
Q Consensus 298 ~~~~p~ILfIDEiD~l~~ 315 (380)
+...+++++||.+..+.+
T Consensus 136 ~~~~~dlvVIDSi~~l~~ 153 (356)
T 3hr8_A 136 RSGVVDLIVVDSVAALVP 153 (356)
T ss_dssp HTSCCSEEEEECTTTCCC
T ss_pred hhcCCCeEEehHhhhhcC
Confidence 456789999999988875
No 111
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.72 E-value=9.1e-05 Score=71.56 Aligned_cols=80 Identities=20% Similarity=0.295 Sum_probs=52.8
Q ss_pred ccCCCCceEEEEcCCCCcHHHHHHHHHHhc---------CCeEEEEecchhh--h------hhcc---------------
Q 016911 237 GLLSPWKGILLFGPPGTGKTMLAKAVATEC---------KTTFFNISASSVV--S------KWRG--------------- 284 (380)
Q Consensus 237 ~~~~~~~~vLL~GppGtGKT~la~ala~~l---------~~~~v~v~~s~l~--~------~~~g--------------- 284 (380)
+.+.++..++|+||||+|||+++..++... +...++++..... . ...+
T Consensus 102 GGl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~~~~~~g~~~~~~~~~l~~~~~ 181 (324)
T 2z43_A 102 GGIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIENMAKALGLDIDNVMNNIYYIRA 181 (324)
T ss_dssp TSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEEC
T ss_pred CCCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHhCCCHHHHhccEEEEeC
Confidence 345677889999999999999999998764 4566777665420 0 0000
Q ss_pred -chH---HHHHHHHHHHHh-cCCeEEEEcCcchhhhh
Q 016911 285 -DSE---KLIKVLFELARH-HAPSTIFLDEIDAIISQ 316 (380)
Q Consensus 285 -e~e---~~l~~lf~~A~~-~~p~ILfIDEiD~l~~~ 316 (380)
..+ ..+..+...... ..+.+|+||.+..+...
T Consensus 182 ~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~ 218 (324)
T 2z43_A 182 INTDHQIAIVDDLQELVSKDPSIKLIVVDSVTSHFRA 218 (324)
T ss_dssp CSHHHHHHHHHHHHHHHHHCTTEEEEEETTTTHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhccCCCEEEEeCcHHHhhh
Confidence 111 123334444444 67899999999998753
No 112
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=97.70 E-value=0.00013 Score=72.07 Aligned_cols=78 Identities=22% Similarity=0.288 Sum_probs=52.0
Q ss_pred cCCCCceEEEEcCCCCcHHHHHHHHHHhc---CCeEEEEecchhhhhh----c------------cchHHHHHHHHHHHH
Q 016911 238 LLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKW----R------------GDSEKLIKVLFELAR 298 (380)
Q Consensus 238 ~~~~~~~vLL~GppGtGKT~la~ala~~l---~~~~v~v~~s~l~~~~----~------------ge~e~~l~~lf~~A~ 298 (380)
.+.++..++|+||||+|||++|..++... +.+++.++........ . ...+..+..+....+
T Consensus 70 Gl~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s~~~~~a~~~g~d~~~l~i~~~~~~e~~l~~l~~l~~ 149 (366)
T 1xp8_A 70 GIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALDPVYARALGVNTDELLVSQPDNGEQALEIMELLVR 149 (366)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHT
T ss_pred CccCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCChhHHHHHHcCCCHHHceeecCCcHHHHHHHHHHHHh
Confidence 45677889999999999999999887754 5566666654321111 0 122333333333444
Q ss_pred hcCCeEEEEcCcchhhh
Q 016911 299 HHAPSTIFLDEIDAIIS 315 (380)
Q Consensus 299 ~~~p~ILfIDEiD~l~~ 315 (380)
...+++|+||.+..+.+
T Consensus 150 ~~~~~lVVIDsl~~l~~ 166 (366)
T 1xp8_A 150 SGAIDVVVVDSVAALTP 166 (366)
T ss_dssp TTCCSEEEEECTTTCCC
T ss_pred cCCCCEEEEeChHHhcc
Confidence 56688999999999874
No 113
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.69 E-value=0.00018 Score=70.22 Aligned_cols=80 Identities=19% Similarity=0.187 Sum_probs=52.2
Q ss_pred ccCCCCceEEEEcCCCCcHHHHHHHHHHhc---------CCeEEEEecchhhh--------hhcc---------------
Q 016911 237 GLLSPWKGILLFGPPGTGKTMLAKAVATEC---------KTTFFNISASSVVS--------KWRG--------------- 284 (380)
Q Consensus 237 ~~~~~~~~vLL~GppGtGKT~la~ala~~l---------~~~~v~v~~s~l~~--------~~~g--------------- 284 (380)
+.+.++..++|+||||+|||+++..+|... +...++++...... ...+
T Consensus 117 GGl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~~~~~~g~~~~~~l~~l~~~~~ 196 (343)
T 1v5w_A 117 GGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDIADRFNVDHDAVLDNVLYARA 196 (343)
T ss_dssp SSBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEEC
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHcCCCHHHHHhceeEeec
Confidence 346777889999999999999999998862 45667776644200 0000
Q ss_pred -chH---HHHHHHHHHHHh--cCCeEEEEcCcchhhhh
Q 016911 285 -DSE---KLIKVLFELARH--HAPSTIFLDEIDAIISQ 316 (380)
Q Consensus 285 -e~e---~~l~~lf~~A~~--~~p~ILfIDEiD~l~~~ 316 (380)
..+ ..+..+...... ..+.+|+||.+..+...
T Consensus 197 ~~~e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~l~~~ 234 (343)
T 1v5w_A 197 YTSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFRV 234 (343)
T ss_dssp CSTTHHHHHHHHHHHHHHHSCSSEEEEEEETSGGGHHH
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCccEEEEechHHHHHH
Confidence 011 222233344444 66889999999998754
No 114
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=97.68 E-value=7.3e-05 Score=73.38 Aligned_cols=78 Identities=23% Similarity=0.291 Sum_probs=51.5
Q ss_pred cCCCCceEEEEcCCCCcHHHHHHHHHHhc---CCeEEEEecchhhhh----hcc------------chHHHHHHHHHHHH
Q 016911 238 LLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSK----WRG------------DSEKLIKVLFELAR 298 (380)
Q Consensus 238 ~~~~~~~vLL~GppGtGKT~la~ala~~l---~~~~v~v~~s~l~~~----~~g------------e~e~~l~~lf~~A~ 298 (380)
.+.++..++|+||||+|||+++..++... +....+++....... ..| ..+..+..+...+.
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~~~~~~a~~lG~~~~~l~i~~~~~~e~~l~~~~~l~~ 136 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTGEQALEIADMLVR 136 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHT
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCcCHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHHh
Confidence 45677889999999999999999998654 455666665332111 111 12333333333444
Q ss_pred hcCCeEEEEcCcchhhh
Q 016911 299 HHAPSTIFLDEIDAIIS 315 (380)
Q Consensus 299 ~~~p~ILfIDEiD~l~~ 315 (380)
...|++|+||++..+.+
T Consensus 137 ~~~~~lIVIDsl~~l~~ 153 (349)
T 2zr9_A 137 SGALDIIVIDSVAALVP 153 (349)
T ss_dssp TTCCSEEEEECGGGCCC
T ss_pred cCCCCEEEEcChHhhcc
Confidence 56789999999999874
No 115
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=97.67 E-value=0.00022 Score=64.56 Aligned_cols=40 Identities=25% Similarity=0.337 Sum_probs=29.5
Q ss_pred cccCCCCceEEEEcCCCCcHHHHHHHHHHhc---CCeEEEEec
Q 016911 236 TGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISA 275 (380)
Q Consensus 236 ~~~~~~~~~vLL~GppGtGKT~la~ala~~l---~~~~v~v~~ 275 (380)
.+.+.++..+++.||||+|||+++..++... +.+.+.++.
T Consensus 17 ~gGl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~ 59 (247)
T 2dr3_A 17 HGGIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVAL 59 (247)
T ss_dssp TTSEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred CCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEc
Confidence 3446677889999999999999988876543 445555544
No 116
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.67 E-value=4e-05 Score=66.41 Aligned_cols=35 Identities=17% Similarity=0.342 Sum_probs=30.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhcCCeEEEEecch
Q 016911 243 KGILLFGPPGTGKTMLAKAVATECKTTFFNISASS 277 (380)
Q Consensus 243 ~~vLL~GppGtGKT~la~ala~~l~~~~v~v~~s~ 277 (380)
..++|.|+||+||||++++++..++.+++.++...
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l~~~~~~~~~D~ 38 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDS 38 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCCeEEeccch
Confidence 56899999999999999999999998888766543
No 117
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.61 E-value=0.00011 Score=72.46 Aligned_cols=78 Identities=26% Similarity=0.313 Sum_probs=50.6
Q ss_pred cCCCCceEEEEcCCCCcHHHHHHHHHHhc---CCeEEEEecchhhhh----hcc------------chHHHHHHHHHHHH
Q 016911 238 LLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSK----WRG------------DSEKLIKVLFELAR 298 (380)
Q Consensus 238 ~~~~~~~vLL~GppGtGKT~la~ala~~l---~~~~v~v~~s~l~~~----~~g------------e~e~~l~~lf~~A~ 298 (380)
.+.++..++|+|+||+|||++|..++... +.+++.++....... ..+ ..+.....+-...+
T Consensus 59 Gl~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~s~~~~~a~~~g~~~~~l~i~~~~~~e~~~~~~~~l~~ 138 (356)
T 1u94_A 59 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 138 (356)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCccHHHHHHcCCChhheeeeCCCCHHHHHHHHHHHHh
Confidence 45677889999999999999999988754 556777776321110 001 11222222223334
Q ss_pred hcCCeEEEEcCcchhhh
Q 016911 299 HHAPSTIFLDEIDAIIS 315 (380)
Q Consensus 299 ~~~p~ILfIDEiD~l~~ 315 (380)
...+++|+||.+..+..
T Consensus 139 ~~~~~lVVIDsl~~l~~ 155 (356)
T 1u94_A 139 SGAVDVIVVDSVAALTP 155 (356)
T ss_dssp HTCCSEEEEECGGGCCC
T ss_pred ccCCCEEEEcCHHHhcc
Confidence 56688999999998864
No 118
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=97.60 E-value=2.2e-05 Score=69.96 Aligned_cols=32 Identities=22% Similarity=0.101 Sum_probs=23.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhc---CCeEEEE
Q 016911 242 WKGILLFGPPGTGKTMLAKAVATEC---KTTFFNI 273 (380)
Q Consensus 242 ~~~vLL~GppGtGKT~la~ala~~l---~~~~v~v 273 (380)
+.-++++||+|+||||++..++..+ +...+.+
T Consensus 3 g~i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~ 37 (184)
T 2orw_A 3 GKLTVITGPMYSGKTTELLSFVEIYKLGKKKVAVF 37 (184)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHHTTCEEEEE
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 3568899999999999996666543 4454444
No 119
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.54 E-value=4.3e-05 Score=66.75 Aligned_cols=33 Identities=27% Similarity=0.429 Sum_probs=29.3
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhcCCeEEEEe
Q 016911 242 WKGILLFGPPGTGKTMLAKAVATECKTTFFNIS 274 (380)
Q Consensus 242 ~~~vLL~GppGtGKT~la~ala~~l~~~~v~v~ 274 (380)
...++|.|+|||||||+++.+|..++.+++..+
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~~~~i~~d 37 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTKRILYDSD 37 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHCCCEEEHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCCEEECh
Confidence 467999999999999999999999998887554
No 120
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=97.54 E-value=0.00026 Score=69.28 Aligned_cols=40 Identities=28% Similarity=0.323 Sum_probs=31.7
Q ss_pred ccCCCCceEEEEcCCCCcHHHHHHHHHHhc---------CCeEEEEecc
Q 016911 237 GLLSPWKGILLFGPPGTGKTMLAKAVATEC---------KTTFFNISAS 276 (380)
Q Consensus 237 ~~~~~~~~vLL~GppGtGKT~la~ala~~l---------~~~~v~v~~s 276 (380)
+.+.++..+.|+||||+|||+|++.++... +...++++..
T Consensus 126 ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e 174 (349)
T 1pzn_A 126 GGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTE 174 (349)
T ss_dssp SSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESS
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCC
Confidence 346777889999999999999999999876 2355666653
No 121
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=97.53 E-value=0.00018 Score=84.31 Aligned_cols=79 Identities=25% Similarity=0.324 Sum_probs=56.3
Q ss_pred cCCCCceEEEEcCCCCcHHHHHHHHHHhc---CCeEEEEecchhhhhhc----c------------chHHHHHHHHHHHH
Q 016911 238 LLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKWR----G------------DSEKLIKVLFELAR 298 (380)
Q Consensus 238 ~~~~~~~vLL~GppGtGKT~la~ala~~l---~~~~v~v~~s~l~~~~~----g------------e~e~~l~~lf~~A~ 298 (380)
++.++..++++||||||||++|.+++.+. +.+...++..+...... | ..+...+......+
T Consensus 1077 gi~~g~~vll~G~~GtGKT~la~~~~~ea~k~Ge~~~Fit~ee~~~~L~a~~~G~dl~~l~~~~pd~~e~~~~i~~~l~~ 1156 (2050)
T 3cmu_A 1077 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 1156 (2050)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHH
T ss_pred CcCCCcEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEccccHHHHHHHHcCCChhHheeecCcchHHHHHHHHHHHH
Confidence 46788999999999999999999997654 67777787765433222 1 12233343444555
Q ss_pred hcCCeEEEEcCcchhhhh
Q 016911 299 HHAPSTIFLDEIDAIISQ 316 (380)
Q Consensus 299 ~~~p~ILfIDEiD~l~~~ 316 (380)
...|++|+||++..+.+.
T Consensus 1157 ~~~~dlvVIDsl~~L~~~ 1174 (2050)
T 3cmu_A 1157 SGAVDVIVVDSVAALTPK 1174 (2050)
T ss_dssp HTCCSEEEESCGGGCCCH
T ss_pred hCCCCEEEECCccccccc
Confidence 667999999999998553
No 122
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=97.51 E-value=0.00023 Score=65.67 Aligned_cols=73 Identities=15% Similarity=0.109 Sum_probs=43.5
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHhc---CCeEEEEecch-------hhhhhccch-----HHHHHHHHHHHHh----c
Q 016911 240 SPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASS-------VVSKWRGDS-----EKLIKVLFELARH----H 300 (380)
Q Consensus 240 ~~~~~vLL~GppGtGKT~la~ala~~l---~~~~v~v~~s~-------l~~~~~ge~-----e~~l~~lf~~A~~----~ 300 (380)
.++.-++++||+|+||||++..++..+ +..++.+.... +... .|.. -.....++..+.. .
T Consensus 10 ~~G~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d~r~~~~i~sr-lG~~~~~~~~~~~~~i~~~i~~~~~~~ 88 (223)
T 2b8t_A 10 KIGWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDTRSIRNIQSR-TGTSLPSVEVESAPEILNYIMSNSFND 88 (223)
T ss_dssp -CCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCCGGGCSSCCCC-CCCSSCCEEESSTHHHHHHHHSTTSCT
T ss_pred CCcEEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccCchHHHHHHHh-cCCCccccccCCHHHHHHHHHHHhhCC
Confidence 345678899999999999998887766 44555553221 1111 1100 0011234444443 3
Q ss_pred CCeEEEEcCcchh
Q 016911 301 APSTIFLDEIDAI 313 (380)
Q Consensus 301 ~p~ILfIDEiD~l 313 (380)
.+++|+|||+..+
T Consensus 89 ~~dvViIDEaQ~l 101 (223)
T 2b8t_A 89 ETKVIGIDEVQFF 101 (223)
T ss_dssp TCCEEEECSGGGS
T ss_pred CCCEEEEecCccC
Confidence 4789999999765
No 123
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.51 E-value=5.1e-05 Score=67.63 Aligned_cols=35 Identities=34% Similarity=0.494 Sum_probs=30.3
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHhcCCeEEEEe
Q 016911 240 SPWKGILLFGPPGTGKTMLAKAVATECKTTFFNIS 274 (380)
Q Consensus 240 ~~~~~vLL~GppGtGKT~la~ala~~l~~~~v~v~ 274 (380)
.++..++|.|+|||||||+++.+++.++.+++..+
T Consensus 23 ~~~~~i~l~G~~GsGKsTl~~~La~~l~~~~i~~d 57 (199)
T 3vaa_A 23 NAMVRIFLTGYMGAGKTTLGKAFARKLNVPFIDLD 57 (199)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEHH
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHcCCCEEcch
Confidence 45678999999999999999999999998886544
No 124
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=97.47 E-value=0.00023 Score=71.21 Aligned_cols=79 Identities=22% Similarity=0.299 Sum_probs=49.1
Q ss_pred ccCCCCceEEEEcCCCCcHHHHHHHHHHhc---------CCeEEEEecchhhh--------hhcc---------------
Q 016911 237 GLLSPWKGILLFGPPGTGKTMLAKAVATEC---------KTTFFNISASSVVS--------KWRG--------------- 284 (380)
Q Consensus 237 ~~~~~~~~vLL~GppGtGKT~la~ala~~l---------~~~~v~v~~s~l~~--------~~~g--------------- 284 (380)
+.+.++..++|+||||+|||+|++.++... +...++++...... ...+
T Consensus 173 GGI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~~~vleni~~~~~ 252 (400)
T 3lda_A 173 GGVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPDDALNNVAYARA 252 (400)
T ss_dssp TSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEEC
T ss_pred CCcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCChHhHhhcEEEecc
Confidence 457788899999999999999999765322 23466666543110 0001
Q ss_pred -ch---HHHHHHHHHHHHhcCCeEEEEcCcchhhh
Q 016911 285 -DS---EKLIKVLFELARHHAPSTIFLDEIDAIIS 315 (380)
Q Consensus 285 -e~---e~~l~~lf~~A~~~~p~ILfIDEiD~l~~ 315 (380)
.. ...+..+........|.+|+||++-.+..
T Consensus 253 ~~~~~~~~~l~~~~~~l~~~~~~llVIDs~t~~~~ 287 (400)
T 3lda_A 253 YNADHQLRLLDAAAQMMSESRFSLIVVDSVMALYR 287 (400)
T ss_dssp CSHHHHHHHHHHHHHHHHHSCEEEEEEETGGGGCC
T ss_pred CChHHHHHHHHHHHHHHHhcCCceEEecchhhhCc
Confidence 01 11222333344456789999999987764
No 125
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.42 E-value=0.00011 Score=64.27 Aligned_cols=39 Identities=26% Similarity=0.324 Sum_probs=32.8
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHhcCCeEEEEecchh
Q 016911 240 SPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSV 278 (380)
Q Consensus 240 ~~~~~vLL~GppGtGKT~la~ala~~l~~~~v~v~~s~l 278 (380)
.++..+.|.||||+||||+++.++..++...+.++..++
T Consensus 7 ~~g~~i~l~G~~GsGKSTl~~~La~~~~~g~i~i~~d~~ 45 (191)
T 1zp6_A 7 LGGNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDL 45 (191)
T ss_dssp CTTEEEEEEECTTSCHHHHHHHHHTCSSSCEEEECTTHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHhccCCCeEEEcccch
Confidence 456789999999999999999999988777777776544
No 126
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=97.39 E-value=0.0014 Score=59.13 Aligned_cols=40 Identities=25% Similarity=0.250 Sum_probs=29.8
Q ss_pred cccCCCCceEEEEcCCCCcHHHHHHHHHHh----cCCeEEEEec
Q 016911 236 TGLLSPWKGILLFGPPGTGKTMLAKAVATE----CKTTFFNISA 275 (380)
Q Consensus 236 ~~~~~~~~~vLL~GppGtGKT~la~ala~~----l~~~~v~v~~ 275 (380)
.+++.++.-+++.|+||+|||++|..+|.. .+.+++.++.
T Consensus 24 ~GGl~~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~ 67 (251)
T 2zts_A 24 EGGFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTL 67 (251)
T ss_dssp TTSEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEES
T ss_pred cCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeecc
Confidence 345677888999999999999999877543 2556655554
No 127
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=97.37 E-value=0.00045 Score=66.26 Aligned_cols=79 Identities=15% Similarity=0.220 Sum_probs=50.8
Q ss_pred ccCCCCceEEEEcCCCCcHHHHHHHHHHhc---------------C----CeEEEEecchhh-hh-------hcc-----
Q 016911 237 GLLSPWKGILLFGPPGTGKTMLAKAVATEC---------------K----TTFFNISASSVV-SK-------WRG----- 284 (380)
Q Consensus 237 ~~~~~~~~vLL~GppGtGKT~la~ala~~l---------------~----~~~v~v~~s~l~-~~-------~~g----- 284 (380)
+.+.++..++|+||||+|||+++..+|... + .+.++++..... .. ..+
T Consensus 93 GGl~~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~~~~~~g~~~~~ 172 (322)
T 2i1q_A 93 GGLESQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQMAEHAGIDGQT 172 (322)
T ss_dssp SSEETTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHHHHHHHTCCHHH
T ss_pred CCccCCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHHHHHHcCCCHHH
Confidence 346677889999999999999999998642 2 566667654321 00 000
Q ss_pred -----------chH---HHHHHHHHHHHh-cCCeEEEEcCcchhhh
Q 016911 285 -----------DSE---KLIKVLFELARH-HAPSTIFLDEIDAIIS 315 (380)
Q Consensus 285 -----------e~e---~~l~~lf~~A~~-~~p~ILfIDEiD~l~~ 315 (380)
..+ ..+..+...... ..+.+|+||.+..+..
T Consensus 173 ~~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~ 218 (322)
T 2i1q_A 173 VLDNTFVARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSLTSTFR 218 (322)
T ss_dssp HHHTEEEEECSSHHHHHHHHHTHHHHHHTTCEEEEEEEECSSHHHH
T ss_pred HhcCEEEEeCCCHHHHHHHHHHHHHHHhhccCccEEEEECcHHHHH
Confidence 111 122233444444 5678999999999875
No 128
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.37 E-value=0.00012 Score=62.68 Aligned_cols=31 Identities=29% Similarity=0.247 Sum_probs=27.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcCCeEEEEe
Q 016911 244 GILLFGPPGTGKTMLAKAVATECKTTFFNIS 274 (380)
Q Consensus 244 ~vLL~GppGtGKT~la~ala~~l~~~~v~v~ 274 (380)
.++|.|+||+||||+++.++..++.+++..+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~~~~i~~d 33 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELKYPIIKGS 33 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHCCCEEECC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeeecCc
Confidence 5889999999999999999999998876554
No 129
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=97.34 E-value=0.003 Score=60.84 Aligned_cols=73 Identities=19% Similarity=0.219 Sum_probs=46.3
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHhc---CCeEEEEecchhhh-------hh-------------ccchHHHHHHHHHH
Q 016911 240 SPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVS-------KW-------------RGDSEKLIKVLFEL 296 (380)
Q Consensus 240 ~~~~~vLL~GppGtGKT~la~ala~~l---~~~~v~v~~s~l~~-------~~-------------~ge~e~~l~~lf~~ 296 (380)
.++..+++.||+|+||||++..+|..+ +..+..+++..... .| .++........+..
T Consensus 102 ~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~s~~~~~~v~~~al~~ 181 (306)
T 1vma_A 102 EPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDAVAH 181 (306)
T ss_dssp SSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccccHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHH
Confidence 456789999999999999999999876 44555555432110 01 01222222333444
Q ss_pred HHhcCCeEEEEcCcch
Q 016911 297 ARHHAPSTIFLDEIDA 312 (380)
Q Consensus 297 A~~~~p~ILfIDEiD~ 312 (380)
+....+++++||+...
T Consensus 182 a~~~~~dvvIiDtpg~ 197 (306)
T 1vma_A 182 ALARNKDVVIIDTAGR 197 (306)
T ss_dssp HHHTTCSEEEEEECCC
T ss_pred HHhcCCCEEEEECCCc
Confidence 5566788999998853
No 130
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=97.34 E-value=0.00013 Score=63.65 Aligned_cols=34 Identities=38% Similarity=0.638 Sum_probs=29.4
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHhcCCeEEEEe
Q 016911 241 PWKGILLFGPPGTGKTMLAKAVATECKTTFFNIS 274 (380)
Q Consensus 241 ~~~~vLL~GppGtGKT~la~ala~~l~~~~v~v~ 274 (380)
.+..++|+|+||+||||+++.++..++.+++..+
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~~~~~~~~~~d 43 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELASKSGLKYINVG 43 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHHCCEEEEHH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHhCCeEEEHH
Confidence 3467999999999999999999999998876554
No 131
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.34 E-value=0.00011 Score=64.18 Aligned_cols=33 Identities=33% Similarity=0.427 Sum_probs=28.8
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHhcCCeEEEE
Q 016911 241 PWKGILLFGPPGTGKTMLAKAVATECKTTFFNI 273 (380)
Q Consensus 241 ~~~~vLL~GppGtGKT~la~ala~~l~~~~v~v 273 (380)
.+..++|.|+||+||||+++.++..++.+++..
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~~l~~~~i~~ 36 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALATGLRLPLLSK 36 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHcCCeEecH
Confidence 456789999999999999999999998877654
No 132
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=97.33 E-value=0.00011 Score=63.93 Aligned_cols=30 Identities=33% Similarity=0.600 Sum_probs=27.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcCCeEEEE
Q 016911 244 GILLFGPPGTGKTMLAKAVATECKTTFFNI 273 (380)
Q Consensus 244 ~vLL~GppGtGKT~la~ala~~l~~~~v~v 273 (380)
.++|.|+||+||||+++.+|..++.+++..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~~~~~d~ 35 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLDLVFLDS 35 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHTCEEEEH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCEEcc
Confidence 589999999999999999999999887654
No 133
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.32 E-value=0.00018 Score=61.99 Aligned_cols=31 Identities=29% Similarity=0.688 Sum_probs=27.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhcCCeEEE
Q 016911 242 WKGILLFGPPGTGKTMLAKAVATECKTTFFN 272 (380)
Q Consensus 242 ~~~vLL~GppGtGKT~la~ala~~l~~~~v~ 272 (380)
+..+.|.|||||||||+++.++..++.+++.
T Consensus 4 ~~~i~l~G~~GsGKSTl~~~La~~l~~~~id 34 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEFYD 34 (173)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHTTCEEEE
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhCCCEEe
Confidence 3568999999999999999999999876654
No 134
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=97.32 E-value=0.0015 Score=59.06 Aligned_cols=115 Identities=12% Similarity=0.101 Sum_probs=66.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhc---CCeEEEEecc---------hhhhhhc-------------c----chHHHHHHH
Q 016911 243 KGILLFGPPGTGKTMLAKAVATEC---KTTFFNISAS---------SVVSKWR-------------G----DSEKLIKVL 293 (380)
Q Consensus 243 ~~vLL~GppGtGKT~la~ala~~l---~~~~v~v~~s---------~l~~~~~-------------g----e~e~~l~~l 293 (380)
..+++++++|.||||+|-++|-.. |..+..+... .+..... . +........
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a~~~ 108 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREADTAACMAV 108 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCCCCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHHHHH
Confidence 578999999999999999998766 6666666321 1222220 0 012233334
Q ss_pred HHHHHh----cCCeEEEEcCcchhhhhccccchhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCCCCCchHHHHhccc
Q 016911 294 FELARH----HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLE 369 (380)
Q Consensus 294 f~~A~~----~~p~ILfIDEiD~l~~~~~~~~~~~~~~~~i~~~Ll~~ldgl~~~~~~VlVIatTN~~~~Ld~aLlrRF~ 369 (380)
+..+.. ...++|+|||+.....-.--. ...++..+ ..+....-||.|+|.+ ++.|...-|
T Consensus 109 l~~a~~~l~~~~yDlvILDEi~~al~~g~l~----------~~ev~~~l---~~Rp~~~~vIlTGr~a---p~~l~e~AD 172 (196)
T 1g5t_A 109 WQHGKRMLADPLLDMVVLDELTYMVAYDYLP----------LEEVISAL---NARPGHQTVIITGRGC---HRDILDLAD 172 (196)
T ss_dssp HHHHHHHTTCTTCSEEEEETHHHHHHTTSSC----------HHHHHHHH---HTSCTTCEEEEECSSC---CHHHHHHCS
T ss_pred HHHHHHHHhcCCCCEEEEeCCCccccCCCCC----------HHHHHHHH---HhCcCCCEEEEECCCC---cHHHHHhCc
Confidence 444432 347899999997653322111 12244444 2344556688899874 566766555
Q ss_pred ceeE
Q 016911 370 KRVS 373 (380)
Q Consensus 370 ~~I~ 373 (380)
.+-+
T Consensus 173 ~VTe 176 (196)
T 1g5t_A 173 TVSE 176 (196)
T ss_dssp EEEE
T ss_pred ceee
Confidence 4433
No 135
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=97.31 E-value=0.0005 Score=69.44 Aligned_cols=60 Identities=20% Similarity=0.341 Sum_probs=38.9
Q ss_pred CCCcccccc-chHHHHHHHHHHHhccccCcccccccCCCCceEEEEcCCCCcHHHHHHHHHHhc---CC-eEEEEecc
Q 016911 204 PDVKWESIK-GLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KT-TFFNISAS 276 (380)
Q Consensus 204 p~~~~~~l~-Gl~~~k~~L~~~l~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~l---~~-~~v~v~~s 276 (380)
+..+++++. ++.+++..+...+.. ....+++.|+||||||+++.+++..+ +. .++.+..+
T Consensus 19 ~p~~~~~Ln~~Q~~av~~~~~~i~~-------------~~~~~li~G~aGTGKT~ll~~~~~~l~~~~~~~il~~a~T 83 (459)
T 3upu_A 19 SHMTFDDLTEGQKNAFNIVMKAIKE-------------KKHHVTINGPAGTGATTLTKFIIEALISTGETGIILAAPT 83 (459)
T ss_dssp --CCSSCCCHHHHHHHHHHHHHHHS-------------SSCEEEEECCTTSCHHHHHHHHHHHHHHTTCCCEEEEESS
T ss_pred CCCccccCCHHHHHHHHHHHHHHhc-------------CCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCceEEEecCc
Confidence 445666665 566666555544422 12389999999999999999998877 33 44445443
No 136
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.31 E-value=0.00044 Score=64.14 Aligned_cols=39 Identities=28% Similarity=0.324 Sum_probs=32.7
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHhcCCeEEEEecchh
Q 016911 240 SPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSV 278 (380)
Q Consensus 240 ~~~~~vLL~GppGtGKT~la~ala~~l~~~~v~v~~s~l 278 (380)
..+..++|.|+||+||||+++.++..++..++.++...+
T Consensus 30 ~~~~~i~l~G~~GsGKSTla~~L~~~l~~~~~~~~~D~~ 68 (253)
T 2p5t_B 30 KQPIAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGDSF 68 (253)
T ss_dssp SSCEEEEEESCGGGTTHHHHHHHHHHTTTCCEEECGGGG
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHhcCCCcEEEecHHH
Confidence 445789999999999999999999999866677776654
No 137
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=97.31 E-value=0.00012 Score=64.03 Aligned_cols=32 Identities=22% Similarity=0.482 Sum_probs=28.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhcCCeEEEEe
Q 016911 243 KGILLFGPPGTGKTMLAKAVATECKTTFFNIS 274 (380)
Q Consensus 243 ~~vLL~GppGtGKT~la~ala~~l~~~~v~v~ 274 (380)
..++|.|+||+||||+++.++..++.+++..+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id~D 34 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALGVGLLDTD 34 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHTCCEEEHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCEEeCc
Confidence 35899999999999999999999998876544
No 138
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.30 E-value=0.00015 Score=63.84 Aligned_cols=34 Identities=35% Similarity=0.509 Sum_probs=28.7
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHh-cCCeEEEEe
Q 016911 241 PWKGILLFGPPGTGKTMLAKAVATE-CKTTFFNIS 274 (380)
Q Consensus 241 ~~~~vLL~GppGtGKT~la~ala~~-l~~~~v~v~ 274 (380)
.+..++|+|+|||||||+++.++.. ++.+++.++
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~l~g~~~id~d 43 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAELDGFQHLEVG 43 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHHSTTEEEEEHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhcCCCEEeeHH
Confidence 3467999999999999999999999 687776544
No 139
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=97.30 E-value=0.00013 Score=62.90 Aligned_cols=33 Identities=24% Similarity=0.410 Sum_probs=28.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhcCCeEEEEe
Q 016911 242 WKGILLFGPPGTGKTMLAKAVATECKTTFFNIS 274 (380)
Q Consensus 242 ~~~vLL~GppGtGKT~la~ala~~l~~~~v~v~ 274 (380)
..+++|.|+|||||||+++.+|..++.+++..+
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~lg~~~id~D 39 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLALKLEVLDTD 39 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHHHTCCEEEHH
T ss_pred cceEEEECCCCCCHHHHHHHHHHHhCCCEEECh
Confidence 367999999999999999999999999887543
No 140
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=97.25 E-value=0.00016 Score=63.27 Aligned_cols=33 Identities=21% Similarity=0.347 Sum_probs=28.8
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHhcCCeEEEE
Q 016911 241 PWKGILLFGPPGTGKTMLAKAVATECKTTFFNI 273 (380)
Q Consensus 241 ~~~~vLL~GppGtGKT~la~ala~~l~~~~v~v 273 (380)
++..++|.|+|||||||+++.++..++.+++..
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~ 40 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQKYGYTHLST 40 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhCCeEEcH
Confidence 446799999999999999999999999877654
No 141
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=97.24 E-value=0.0026 Score=59.51 Aligned_cols=29 Identities=31% Similarity=0.335 Sum_probs=24.9
Q ss_pred cCCCCceEEEEcCCCCcHHHHHHHHHHhc
Q 016911 238 LLSPWKGILLFGPPGTGKTMLAKAVATEC 266 (380)
Q Consensus 238 ~~~~~~~vLL~GppGtGKT~la~ala~~l 266 (380)
.+.++..++|+||||+|||||++.++..+
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~ 54 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQI 54 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 45677889999999999999999998644
No 142
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=97.24 E-value=0.00018 Score=64.97 Aligned_cols=33 Identities=24% Similarity=0.438 Sum_probs=28.8
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHhcCCeEEEE
Q 016911 241 PWKGILLFGPPGTGKTMLAKAVATECKTTFFNI 273 (380)
Q Consensus 241 ~~~~vLL~GppGtGKT~la~ala~~l~~~~v~v 273 (380)
++..++|.|+||+||||+++.++..++.+++..
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 35 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERFHAAHLAT 35 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCceEEeh
Confidence 456799999999999999999999999876554
No 143
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=97.23 E-value=0.00018 Score=62.71 Aligned_cols=32 Identities=19% Similarity=0.310 Sum_probs=27.7
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhcCCeEEEE
Q 016911 242 WKGILLFGPPGTGKTMLAKAVATECKTTFFNI 273 (380)
Q Consensus 242 ~~~vLL~GppGtGKT~la~ala~~l~~~~v~v 273 (380)
+..++|.|+|||||||+++.++..++.+++..
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 34 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKYGYTHLSA 34 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCCeEEeH
Confidence 35789999999999999999999998776543
No 144
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=97.22 E-value=0.0007 Score=65.92 Aligned_cols=77 Identities=14% Similarity=0.228 Sum_probs=48.7
Q ss_pred ccCCCCceEEEEcCCCCcHHHHHHHHHHhc-----CCeEEEEecchhhh----hhc------------cchHHH-HHHHH
Q 016911 237 GLLSPWKGILLFGPPGTGKTMLAKAVATEC-----KTTFFNISASSVVS----KWR------------GDSEKL-IKVLF 294 (380)
Q Consensus 237 ~~~~~~~~vLL~GppGtGKT~la~ala~~l-----~~~~v~v~~s~l~~----~~~------------ge~e~~-l~~lf 294 (380)
+.+.++ .++++||||+|||+|+..++... +...++++..+-.. ... ...+.. +. +.
T Consensus 24 GGl~~G-iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~ra~~lGvd~d~llv~~~~~~E~~~l~-i~ 101 (333)
T 3io5_A 24 GGMQSG-LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPAYLRSMGVDPERVIHTPVQSLEQLRID-MV 101 (333)
T ss_dssp CCBCSE-EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHHHHHHTTCCGGGEEEEECSBHHHHHHH-HH
T ss_pred CCCcCC-eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHHHHHHhCCCHHHeEEEcCCCHHHHHHH-HH
Confidence 345566 68999999999999987776543 55677777643211 001 112222 22 22
Q ss_pred HH---HHhcCCeEEEEcCcchhhh
Q 016911 295 EL---ARHHAPSTIFLDEIDAIIS 315 (380)
Q Consensus 295 ~~---A~~~~p~ILfIDEiD~l~~ 315 (380)
+. .+...|++|+||-+..+.+
T Consensus 102 ~~l~~i~~~~~~lvVIDSI~aL~~ 125 (333)
T 3io5_A 102 NQLDAIERGEKVVVFIDSLGNLAS 125 (333)
T ss_dssp HHHHTCCTTCCEEEEEECSTTCBC
T ss_pred HHHHHhhccCceEEEEeccccccc
Confidence 22 2456799999999999875
No 145
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=97.20 E-value=0.0002 Score=63.55 Aligned_cols=33 Identities=30% Similarity=0.476 Sum_probs=28.4
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHhcCCeEEEE
Q 016911 241 PWKGILLFGPPGTGKTMLAKAVATECKTTFFNI 273 (380)
Q Consensus 241 ~~~~vLL~GppGtGKT~la~ala~~l~~~~v~v 273 (380)
.+..++|.|+||+||||+++.++..++.+++.+
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~~l~~~~i~~ 51 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAEKLGIPQIST 51 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCcEEeh
Confidence 335689999999999999999999999887654
No 146
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.18 E-value=0.00049 Score=65.42 Aligned_cols=39 Identities=31% Similarity=0.418 Sum_probs=31.2
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHhcCCeEEEEecchh
Q 016911 240 SPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSV 278 (380)
Q Consensus 240 ~~~~~vLL~GppGtGKT~la~ala~~l~~~~v~v~~s~l 278 (380)
..+..++|.||||+||||+++.++..++..++.+++..+
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~~~~~~~~~Is~D~~ 69 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTF 69 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECTHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCCCeEEEechHh
Confidence 345678999999999999999999988555667776443
No 147
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=97.18 E-value=0.0045 Score=64.51 Aligned_cols=65 Identities=14% Similarity=0.265 Sum_probs=43.8
Q ss_pred eEEEEcCcchhhhhccccchhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCCCC--CchHHHHhcccceeEecCCC
Q 016911 303 STIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPW--ELDAAMLRRLEKRVSFSLIA 378 (380)
Q Consensus 303 ~ILfIDEiD~l~~~~~~~~~~~~~~~~i~~~Ll~~ldgl~~~~~~VlVIatTN~~~--~Ld~aLlrRF~~~I~~plPd 378 (380)
-+|+|||+..+..... ......+..+...- +.-.|.+|.+|.+|. .++..+++-|...|.+.+.+
T Consensus 345 ivvVIDE~~~L~~~~~------~~~~~~L~~Iar~G-----Ra~GIhLIlaTQRPs~d~I~~~Iran~~~RI~lrv~s 411 (574)
T 2iut_A 345 IVVVVDEFADMMMIVG------KKVEELIARIAQKA-----RAAGIHLILATQRPSVDVITGLIKANIPTRIAFQVSS 411 (574)
T ss_dssp EEEEESCCTTHHHHTC------HHHHHHHHHHHHHC-----TTTTEEEEEEESCCCTTTSCHHHHHTCCEEEEECCSC
T ss_pred EEEEEeCHHHHhhhhh------HHHHHHHHHHHHHH-----hhCCeEEEEEecCcccccccHHHHhhhccEEEEEcCC
Confidence 5899999998875421 11222333343332 344588899999997 79999999888877777653
No 148
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=97.18 E-value=0.0016 Score=65.98 Aligned_cols=73 Identities=18% Similarity=0.127 Sum_probs=49.9
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHhc---CCeEEEEecchhhh----------h----------hccchHHHHHHHHHHH
Q 016911 241 PWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVS----------K----------WRGDSEKLIKVLFELA 297 (380)
Q Consensus 241 ~~~~vLL~GppGtGKT~la~ala~~l---~~~~v~v~~s~l~~----------~----------~~ge~e~~l~~lf~~A 297 (380)
++..+++.|++|+||||++..+|..+ +..+..+++..... . ........++..+..+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a 178 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYF 178 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHH
Confidence 46789999999999999999998766 55666566532210 0 1122344555667777
Q ss_pred HhcCCeEEEEcCcchh
Q 016911 298 RHHAPSTIFLDEIDAI 313 (380)
Q Consensus 298 ~~~~p~ILfIDEiD~l 313 (380)
....+++++||....+
T Consensus 179 ~~~~~DvVIIDTaGrl 194 (443)
T 3dm5_A 179 KSKGVDIIIVDTAGRH 194 (443)
T ss_dssp HHTTCSEEEEECCCCS
T ss_pred HhCCCCEEEEECCCcc
Confidence 7666789999988644
No 149
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=97.17 E-value=0.00021 Score=61.46 Aligned_cols=31 Identities=23% Similarity=0.440 Sum_probs=27.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhcCCeEEEE
Q 016911 243 KGILLFGPPGTGKTMLAKAVATECKTTFFNI 273 (380)
Q Consensus 243 ~~vLL~GppGtGKT~la~ala~~l~~~~v~v 273 (380)
..++|.|+||+||||+++.++..++.+++..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id~ 33 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALGYEFVDT 33 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCcEEcc
Confidence 3589999999999999999999999877653
No 150
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=97.17 E-value=0.0042 Score=63.97 Aligned_cols=48 Identities=13% Similarity=0.095 Sum_probs=37.8
Q ss_pred ccccccchHHHHHHHHHHHhccccCcccccccCCCCceEEEEcCCCCcHHHHHHHHHH
Q 016911 207 KWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVAT 264 (380)
Q Consensus 207 ~~~~l~Gl~~~k~~L~~~l~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~ 264 (380)
....++|.+..++.|.+.+... ....+.+.|+|++|+|||+||..++.
T Consensus 122 ~~~~~vGR~~~l~~L~~~L~~~----------~~~~~~v~I~G~~GiGKTtLa~~~~~ 169 (591)
T 1z6t_A 122 RPVVFVTRKKLVNAIQQKLSKL----------KGEPGWVTIHGMAGCGKSVLAAEAVR 169 (591)
T ss_dssp CCSSCCCCHHHHHHHHHHHTTS----------TTSCEEEEEECCTTSSHHHHHHHHHC
T ss_pred CCCeecccHHHHHHHHHHHhcc----------cCCCceEEEEcCCCCCHHHHHHHHHh
Confidence 3567899999999998876421 12346799999999999999999865
No 151
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.17 E-value=0.00023 Score=60.51 Aligned_cols=29 Identities=34% Similarity=0.520 Sum_probs=25.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcCCeEEEE
Q 016911 244 GILLFGPPGTGKTMLAKAVATECKTTFFNI 273 (380)
Q Consensus 244 ~vLL~GppGtGKT~la~ala~~l~~~~v~v 273 (380)
.++|.||||+||||+++.+ ..++.+++.+
T Consensus 3 ~I~l~G~~GsGKsT~a~~L-~~~g~~~i~~ 31 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL-KERGAKVIVM 31 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH-HHTTCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHH-HHCCCcEEEH
Confidence 5889999999999999999 8888887654
No 152
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.17 E-value=0.00025 Score=61.75 Aligned_cols=32 Identities=28% Similarity=0.494 Sum_probs=27.5
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhcCCeEEEE
Q 016911 242 WKGILLFGPPGTGKTMLAKAVATECKTTFFNI 273 (380)
Q Consensus 242 ~~~vLL~GppGtGKT~la~ala~~l~~~~v~v 273 (380)
+..++|.|+|||||||+++.++..++.+++..
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~~l~~~~i~~ 35 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQELGFKKLST 35 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHHHTCEEECH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCeEecH
Confidence 45689999999999999999999998766543
No 153
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=97.16 E-value=0.0012 Score=57.53 Aligned_cols=22 Identities=32% Similarity=0.579 Sum_probs=19.4
Q ss_pred CCCceEEEEcCCCCcHHHHHHH
Q 016911 240 SPWKGILLFGPPGTGKTMLAKA 261 (380)
Q Consensus 240 ~~~~~vLL~GppGtGKT~la~a 261 (380)
.++.-+.|.||+|+||||++++
T Consensus 7 ~~gei~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 7 PELSLVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp ESSEEEEEECCTTSCHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHH
Confidence 4567899999999999999994
No 154
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.15 E-value=0.00029 Score=60.90 Aligned_cols=32 Identities=28% Similarity=0.503 Sum_probs=27.5
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHhcCCeEEE
Q 016911 241 PWKGILLFGPPGTGKTMLAKAVATECKTTFFN 272 (380)
Q Consensus 241 ~~~~vLL~GppGtGKT~la~ala~~l~~~~v~ 272 (380)
++..++|.||||+||||+++.++..++..++.
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~~~g~~~i~ 38 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAHQLHAAFLD 38 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHHHHTCEEEE
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHhhCcEEEe
Confidence 34678999999999999999999998866654
No 155
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=97.12 E-value=0.00021 Score=62.13 Aligned_cols=30 Identities=20% Similarity=0.375 Sum_probs=26.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhcC-----CeEEE
Q 016911 243 KGILLFGPPGTGKTMLAKAVATECK-----TTFFN 272 (380)
Q Consensus 243 ~~vLL~GppGtGKT~la~ala~~l~-----~~~v~ 272 (380)
..++|.|+||+||||+++.++..++ .+++.
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~i~ 38 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVS 38 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHTTTCCCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhcCcceEEEe
Confidence 5689999999999999999999887 56654
No 156
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.11 E-value=0.0003 Score=62.45 Aligned_cols=32 Identities=28% Similarity=0.532 Sum_probs=27.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhcCCeEEEE
Q 016911 242 WKGILLFGPPGTGKTMLAKAVATECKTTFFNI 273 (380)
Q Consensus 242 ~~~vLL~GppGtGKT~la~ala~~l~~~~v~v 273 (380)
+..++|.|+||+||||+++.++..++..++..
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~lg~~~i~~ 49 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEACGYPFIEG 49 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHHTCCEEEG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCEEEeC
Confidence 45799999999999999999999998776653
No 157
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=97.11 E-value=0.0011 Score=61.72 Aligned_cols=37 Identities=24% Similarity=0.370 Sum_probs=30.3
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHh---cCCeEEEEecchh
Q 016911 242 WKGILLFGPPGTGKTMLAKAVATE---CKTTFFNISASSV 278 (380)
Q Consensus 242 ~~~vLL~GppGtGKT~la~ala~~---l~~~~v~v~~s~l 278 (380)
+..++|.|+||+||||+++.++.. .+.+++.++...+
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~~ 43 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLI 43 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECchHH
Confidence 457899999999999999999998 6777776665544
No 158
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=97.10 E-value=0.0003 Score=65.58 Aligned_cols=32 Identities=28% Similarity=0.397 Sum_probs=28.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcCCeEEEEec
Q 016911 244 GILLFGPPGTGKTMLAKAVATECKTTFFNISA 275 (380)
Q Consensus 244 ~vLL~GppGtGKT~la~ala~~l~~~~v~v~~ 275 (380)
.++|.|||||||||+|+.+|..++.+++..+.
T Consensus 3 li~I~G~~GSGKSTla~~La~~~~~~~i~~D~ 34 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQETGWPVVALDR 34 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCCCEEECCS
T ss_pred EEEEECCCCcCHHHHHHHHHhcCCCeEEeccH
Confidence 57899999999999999999999988877654
No 159
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=97.10 E-value=0.00052 Score=64.52 Aligned_cols=72 Identities=22% Similarity=0.320 Sum_probs=44.0
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHhcC----CeEEEEecc--hhhh--------hhccchHHHHHHHHHHHHhcCCeEE
Q 016911 240 SPWKGILLFGPPGTGKTMLAKAVATECK----TTFFNISAS--SVVS--------KWRGDSEKLIKVLFELARHHAPSTI 305 (380)
Q Consensus 240 ~~~~~vLL~GppGtGKT~la~ala~~l~----~~~v~v~~s--~l~~--------~~~ge~e~~l~~lf~~A~~~~p~IL 305 (380)
.++..+++.||+|+||||++++++..+. ..++..... .+.. ..++.....++..+..+....|.+|
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~~~~~~~~v~q~~~gl~~~~l~~~la~aL~~~p~il 102 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQREVGEDTKSFADALRAALREDPDVI 102 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHHHHCCSEE
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceeecCCcceeeeHHHhCCCHHHHHHHHHHHHhhCCCEE
Confidence 5677899999999999999999998662 233222110 0000 0001011223445555555679999
Q ss_pred EEcCcc
Q 016911 306 FLDEID 311 (380)
Q Consensus 306 fIDEiD 311 (380)
++||.-
T Consensus 103 llDEp~ 108 (261)
T 2eyu_A 103 FVGEMR 108 (261)
T ss_dssp EESCCC
T ss_pred EeCCCC
Confidence 999984
No 160
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=97.09 E-value=0.00052 Score=67.57 Aligned_cols=71 Identities=20% Similarity=0.257 Sum_probs=44.7
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHhcC----CeEEEEec-chhhh---------hhccchHHHHHHHHHHHHhcCCeEEE
Q 016911 241 PWKGILLFGPPGTGKTMLAKAVATECK----TTFFNISA-SSVVS---------KWRGDSEKLIKVLFELARHHAPSTIF 306 (380)
Q Consensus 241 ~~~~vLL~GppGtGKT~la~ala~~l~----~~~v~v~~-s~l~~---------~~~ge~e~~l~~lf~~A~~~~p~ILf 306 (380)
++..+++.||+|+||||+++++++.++ ..++.+.- .++.. ...+.........+..+....|++|+
T Consensus 122 ~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~~~~~~v~q~~~~~~~~~~~~~La~aL~~~Pdvil 201 (356)
T 3jvv_A 122 PRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHESKKCLVNQREVHRDTLGFSEALRSALREDPDIIL 201 (356)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHTTSCCSEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhhccccceeeeeeccccCCHHHHHHHHhhhCcCEEe
Confidence 445799999999999999999988762 33333221 11110 00111111233456677778899999
Q ss_pred EcCcc
Q 016911 307 LDEID 311 (380)
Q Consensus 307 IDEiD 311 (380)
+||+-
T Consensus 202 lDEp~ 206 (356)
T 3jvv_A 202 VGEMR 206 (356)
T ss_dssp ESCCC
T ss_pred cCCCC
Confidence 99994
No 161
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.09 E-value=0.00033 Score=60.30 Aligned_cols=29 Identities=31% Similarity=0.359 Sum_probs=24.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHH-hcCCeEE
Q 016911 243 KGILLFGPPGTGKTMLAKAVAT-ECKTTFF 271 (380)
Q Consensus 243 ~~vLL~GppGtGKT~la~ala~-~l~~~~v 271 (380)
..++|.|+||+||||+++.++. .++..++
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~~~~~~~~i 32 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIAKNPGFYNI 32 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSTTEEEE
T ss_pred eEEEEecCCCCCHHHHHHHHHhhcCCcEEe
Confidence 4689999999999999999998 5665444
No 162
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=97.09 E-value=0.00072 Score=78.37 Aligned_cols=78 Identities=26% Similarity=0.329 Sum_probs=52.5
Q ss_pred cCCCCceEEEEcCCCCcHHHHHHHHHHhc---CCeEEEEecchhh----hhhcc------------chHHHHHHHHHHHH
Q 016911 238 LLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVV----SKWRG------------DSEKLIKVLFELAR 298 (380)
Q Consensus 238 ~~~~~~~vLL~GppGtGKT~la~ala~~l---~~~~v~v~~s~l~----~~~~g------------e~e~~l~~lf~~A~ 298 (380)
.+.++..++|+||||+|||++|..+|... +.++.+++..... ....| ..+.....+-....
T Consensus 728 Gl~~G~lVlI~G~PG~GKTtLal~lA~~aa~~g~~VlyiS~Ees~~ql~A~~lGvd~~~L~i~~~~~leei~~~l~~lv~ 807 (1706)
T 3cmw_A 728 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 807 (1706)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHH
T ss_pred CcCCCceEEEECCCCCCcHHHHHHHHHHHHHcCCCeEEEeccchHHHHHHHHcCCChhheEEecCCcHHHHHHHHHHHHH
Confidence 46788899999999999999999998765 4467676654332 11111 12222222222333
Q ss_pred hcCCeEEEEcCcchhhh
Q 016911 299 HHAPSTIFLDEIDAIIS 315 (380)
Q Consensus 299 ~~~p~ILfIDEiD~l~~ 315 (380)
...+++|+||.+..+.+
T Consensus 808 ~~~~~lVVIDsLq~l~~ 824 (1706)
T 3cmw_A 808 SGAVDVIVVDSVAALTP 824 (1706)
T ss_dssp HTCCSEEEESCSTTCCC
T ss_pred ccCCCEEEEechhhhcc
Confidence 57789999999999874
No 163
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=97.09 E-value=0.00027 Score=61.98 Aligned_cols=32 Identities=25% Similarity=0.417 Sum_probs=27.8
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhcCCeEEEE
Q 016911 242 WKGILLFGPPGTGKTMLAKAVATECKTTFFNI 273 (380)
Q Consensus 242 ~~~vLL~GppGtGKT~la~ala~~l~~~~v~v 273 (380)
+..++|.|+||+||||+++.++..++.+++..
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~ 43 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKYGFTHLST 43 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCeEEcH
Confidence 35799999999999999999999998776544
No 164
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=97.08 E-value=0.00026 Score=61.40 Aligned_cols=30 Identities=30% Similarity=0.352 Sum_probs=23.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhcCCeEE
Q 016911 242 WKGILLFGPPGTGKTMLAKAVATECKTTFF 271 (380)
Q Consensus 242 ~~~vLL~GppGtGKT~la~ala~~l~~~~v 271 (380)
+..++|.|+||+||||+++.++..++.+++
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l~~~~i 34 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERLPGSFV 34 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHSTTCEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCCCEE
Confidence 356899999999999999999999998876
No 165
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=97.08 E-value=0.0003 Score=63.86 Aligned_cols=32 Identities=19% Similarity=0.433 Sum_probs=28.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhcCCeEEEE
Q 016911 242 WKGILLFGPPGTGKTMLAKAVATECKTTFFNI 273 (380)
Q Consensus 242 ~~~vLL~GppGtGKT~la~ala~~l~~~~v~v 273 (380)
+..++|.|+||+||||+++.++..++.+++..
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 38 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHFELKHLSS 38 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHSSSEEEEH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCCeEEec
Confidence 46799999999999999999999999877654
No 166
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.08 E-value=0.00043 Score=61.60 Aligned_cols=33 Identities=33% Similarity=0.578 Sum_probs=27.3
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHhcCCeEEE
Q 016911 240 SPWKGILLFGPPGTGKTMLAKAVATECKTTFFN 272 (380)
Q Consensus 240 ~~~~~vLL~GppGtGKT~la~ala~~l~~~~v~ 272 (380)
.++..+.|.||+|+||||+++.+++.++..++.
T Consensus 27 ~~g~~i~l~G~~GsGKSTl~~~L~~~~g~~~i~ 59 (200)
T 4eun_A 27 EPTRHVVVMGVSGSGKTTIAHGVADETGLEFAE 59 (200)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHHCCEEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhhCCeEEc
Confidence 345679999999999999999999999765543
No 167
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=97.07 E-value=0.0003 Score=63.05 Aligned_cols=30 Identities=20% Similarity=0.453 Sum_probs=26.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcCCeEEEE
Q 016911 244 GILLFGPPGTGKTMLAKAVATECKTTFFNI 273 (380)
Q Consensus 244 ~vLL~GppGtGKT~la~ala~~l~~~~v~v 273 (380)
.++|.||||+||||+++.++..++.+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYGIPHIST 31 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEeH
Confidence 478999999999999999999998777654
No 168
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=97.06 E-value=0.00034 Score=60.80 Aligned_cols=31 Identities=16% Similarity=0.385 Sum_probs=27.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhcCCeEEEE
Q 016911 243 KGILLFGPPGTGKTMLAKAVATECKTTFFNI 273 (380)
Q Consensus 243 ~~vLL~GppGtGKT~la~ala~~l~~~~v~v 273 (380)
..++|.|+|||||||+++.++..++.+++..
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~~l~~~~i~~ 37 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVRDFGWVHLSA 37 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCeEeeH
Confidence 5689999999999999999999998776654
No 169
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=97.06 E-value=0.00038 Score=61.69 Aligned_cols=33 Identities=18% Similarity=0.366 Sum_probs=28.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhcCCeEEEEe
Q 016911 242 WKGILLFGPPGTGKTMLAKAVATECKTTFFNIS 274 (380)
Q Consensus 242 ~~~vLL~GppGtGKT~la~ala~~l~~~~v~v~ 274 (380)
+..++|.|+|||||||+++.++..++.+++..+
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~~~~g~~~i~~d 47 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLVKDYSFVHLSAG 47 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHSSCEEEEHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCceEEeHH
Confidence 356889999999999999999999987766543
No 170
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=97.06 E-value=0.00034 Score=64.68 Aligned_cols=34 Identities=18% Similarity=0.312 Sum_probs=29.0
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHhcCCeEEEE
Q 016911 240 SPWKGILLFGPPGTGKTMLAKAVATECKTTFFNI 273 (380)
Q Consensus 240 ~~~~~vLL~GppGtGKT~la~ala~~l~~~~v~v 273 (380)
.++..++|.||||+||||+++.+++.++.+++.+
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~g~~~is~ 60 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKKSHCYCHLST 60 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHhCCeEEec
Confidence 3557899999999999999999999998766544
No 171
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=97.05 E-value=0.00031 Score=60.07 Aligned_cols=30 Identities=20% Similarity=0.433 Sum_probs=26.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcCCeEEEE
Q 016911 244 GILLFGPPGTGKTMLAKAVATECKTTFFNI 273 (380)
Q Consensus 244 ~vLL~GppGtGKT~la~ala~~l~~~~v~v 273 (380)
.++|.|+||+||||+++.++..++.+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~ 31 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLNIPFYDV 31 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHTCCEEEH
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 478999999999999999999999877653
No 172
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=97.04 E-value=0.00037 Score=63.63 Aligned_cols=33 Identities=27% Similarity=0.392 Sum_probs=28.6
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHhcCCeEEEE
Q 016911 241 PWKGILLFGPPGTGKTMLAKAVATECKTTFFNI 273 (380)
Q Consensus 241 ~~~~vLL~GppGtGKT~la~ala~~l~~~~v~v 273 (380)
.+..++|.|+|||||||+++.||..++.+++..
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 47 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNFCVCHLAT 47 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCceecH
Confidence 346799999999999999999999999777654
No 173
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=97.02 E-value=0.00033 Score=62.67 Aligned_cols=30 Identities=27% Similarity=0.507 Sum_probs=26.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcCCeEEEE
Q 016911 244 GILLFGPPGTGKTMLAKAVATECKTTFFNI 273 (380)
Q Consensus 244 ~vLL~GppGtGKT~la~ala~~l~~~~v~v 273 (380)
.++|.||||+||||+++.++..++.+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYEIPHIST 31 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEeeH
Confidence 478999999999999999999998777654
No 174
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=97.00 E-value=0.0013 Score=60.90 Aligned_cols=33 Identities=21% Similarity=0.185 Sum_probs=26.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhc---CCeEEEEec
Q 016911 243 KGILLFGPPGTGKTMLAKAVATEC---KTTFFNISA 275 (380)
Q Consensus 243 ~~vLL~GppGtGKT~la~ala~~l---~~~~v~v~~ 275 (380)
..+++.|+||+||||++-.+|..+ |..++.++.
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~ 42 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVV 42 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEe
Confidence 569999999999999999998776 556554444
No 175
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=97.00 E-value=0.0035 Score=60.26 Aligned_cols=115 Identities=14% Similarity=0.066 Sum_probs=66.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhc---CC-eEEEEecchhhhhhccchHHHHHHHHHHHHhcCCeEEEEcCcch-hhhh
Q 016911 242 WKGILLFGPPGTGKTMLAKAVATEC---KT-TFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDA-IISQ 316 (380)
Q Consensus 242 ~~~vLL~GppGtGKT~la~ala~~l---~~-~~v~v~~s~l~~~~~ge~e~~l~~lf~~A~~~~p~ILfIDEiD~-l~~~ 316 (380)
...+||+||+|.||++.++.+++.+ +. +...+.... . .+.......+-.........|++|||++. +...
T Consensus 18 ~~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~---~--~~~~~l~~~~~~~plf~~~kvvii~~~~~kl~~~ 92 (343)
T 1jr3_D 18 RAAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFSIDP---N--TDWNAIFSLCQAMSLFASRQTLLLLLPENGPNAA 92 (343)
T ss_dssp CSEEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEECCT---T--CCHHHHHHHHHHHHHCCSCEEEEEECCSSCCCTT
T ss_pred CcEEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEEecC---C--CCHHHHHHHhcCcCCccCCeEEEEECCCCCCChH
Confidence 4689999999999999999998865 21 222221111 0 12222222222222233467999999987 6321
Q ss_pred ccccchhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCCC------CCchHHHHhcccceeEecCCC
Q 016911 317 RGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLP------WELDAAMLRRLEKRVSFSLIA 378 (380)
Q Consensus 317 ~~~~~~~~~~~~~i~~~Ll~~ldgl~~~~~~VlVIatTN~~------~~Ld~aLlrRF~~~I~~plPd 378 (380)
..+.|+..++.. +..+++|.+++.+ ..+.+++.+|.. .+.|..|+
T Consensus 93 -------------~~~aLl~~le~p---~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~-~~~~~~l~ 143 (343)
T 1jr3_D 93 -------------INEQLLTLTGLL---HDDLLLIVRGNKLSKAQENAAWFTALANRSV-QVTCQTPE 143 (343)
T ss_dssp -------------HHHHHHHHHTTC---BTTEEEEEEESCCCTTTTTSHHHHHHTTTCE-EEEECCCC
T ss_pred -------------HHHHHHHHHhcC---CCCeEEEEEcCCCChhhHhhHHHHHHHhCce-EEEeeCCC
Confidence 234566666432 2334444444442 347788888874 56676554
No 176
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.99 E-value=0.00059 Score=59.32 Aligned_cols=38 Identities=18% Similarity=0.281 Sum_probs=32.0
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHhc---CCeEEEEecchh
Q 016911 241 PWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSV 278 (380)
Q Consensus 241 ~~~~vLL~GppGtGKT~la~ala~~l---~~~~v~v~~s~l 278 (380)
++..+.|.|++|+||||+++.++..+ +.+++.++...+
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~~~~ 44 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNI 44 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECChHH
Confidence 45678899999999999999999988 888888775433
No 177
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.98 E-value=0.00034 Score=63.16 Aligned_cols=31 Identities=23% Similarity=0.500 Sum_probs=27.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhcCCeEEEE
Q 016911 243 KGILLFGPPGTGKTMLAKAVATECKTTFFNI 273 (380)
Q Consensus 243 ~~vLL~GppGtGKT~la~ala~~l~~~~v~v 273 (380)
..++|.|+||+||||+++.+|..++.+++..
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 36 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEYGLAHLST 36 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCceEEeh
Confidence 5689999999999999999999999877654
No 178
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=96.97 E-value=0.00046 Score=72.11 Aligned_cols=35 Identities=31% Similarity=0.346 Sum_probs=27.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhc---CCeEEEEecc
Q 016911 242 WKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISAS 276 (380)
Q Consensus 242 ~~~vLL~GppGtGKT~la~ala~~l---~~~~v~v~~s 276 (380)
...+++.||||||||+++.+++..+ +.++..+..+
T Consensus 204 ~~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~ApT 241 (574)
T 3e1s_A 204 HRLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLCAPT 241 (574)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEecCc
Confidence 3678999999999999999998765 5566555443
No 179
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.96 E-value=0.0007 Score=60.19 Aligned_cols=39 Identities=23% Similarity=0.238 Sum_probs=30.5
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHhc---CCeEEEEecchh
Q 016911 240 SPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSV 278 (380)
Q Consensus 240 ~~~~~vLL~GppGtGKT~la~ala~~l---~~~~v~v~~s~l 278 (380)
.++..+.|.||+|+||||++++++..+ +...+.++...+
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~~ 64 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDNV 64 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCchh
Confidence 456789999999999999999999988 444345665444
No 180
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.96 E-value=0.0003 Score=63.52 Aligned_cols=31 Identities=16% Similarity=0.321 Sum_probs=27.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhcCCeEEE
Q 016911 242 WKGILLFGPPGTGKTMLAKAVATECKTTFFN 272 (380)
Q Consensus 242 ~~~vLL~GppGtGKT~la~ala~~l~~~~v~ 272 (380)
+..++|.|+||+||||+++.+|..++..++.
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~ 35 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTKYQLAHIS 35 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHHHCCEECC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCceec
Confidence 4579999999999999999999999876544
No 181
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.94 E-value=0.00064 Score=62.36 Aligned_cols=38 Identities=21% Similarity=0.412 Sum_probs=30.3
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHhcCCeEEEEecchhh
Q 016911 240 SPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVV 279 (380)
Q Consensus 240 ~~~~~vLL~GppGtGKT~la~ala~~l~~~~v~v~~s~l~ 279 (380)
+.++-++|.||||+||+|.|+.|++.++.+. ++..++.
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~~g~~h--IstGdll 64 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQKFHFNH--LSSGDLL 64 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHHHCCEE--ECHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHCCce--EcHHHHH
Confidence 4456788999999999999999999998665 4444444
No 182
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.91 E-value=0.00078 Score=59.35 Aligned_cols=34 Identities=18% Similarity=0.111 Sum_probs=28.8
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHhc-CCeEEEEe
Q 016911 241 PWKGILLFGPPGTGKTMLAKAVATEC-KTTFFNIS 274 (380)
Q Consensus 241 ~~~~vLL~GppGtGKT~la~ala~~l-~~~~v~v~ 274 (380)
.+..+.|.|++|+||||+++.++..+ +.+++.++
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l~g~~~~~~~ 37 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESIPANTIKYLN 37 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTSCGGGEEEEE
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHCCCceEEEe
Confidence 34678999999999999999999998 56776655
No 183
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=96.89 E-value=0.0055 Score=61.76 Aligned_cols=39 Identities=21% Similarity=0.192 Sum_probs=30.8
Q ss_pred ccCCCCceEEEEcCCCCcHHHHHHHHHHhc----CCeEEEEec
Q 016911 237 GLLSPWKGILLFGPPGTGKTMLAKAVATEC----KTTFFNISA 275 (380)
Q Consensus 237 ~~~~~~~~vLL~GppGtGKT~la~ala~~l----~~~~v~v~~ 275 (380)
+.+.++..+++.|+||+|||+++..+|... +.++..++.
T Consensus 198 gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~ 240 (454)
T 2r6a_A 198 SGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSL 240 (454)
T ss_dssp SSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEES
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEEC
Confidence 447788899999999999999999988754 446666553
No 184
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=96.87 E-value=0.0007 Score=61.46 Aligned_cols=34 Identities=35% Similarity=0.578 Sum_probs=27.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcCCeEEEEecchhh
Q 016911 244 GILLFGPPGTGKTMLAKAVATECKTTFFNISASSVV 279 (380)
Q Consensus 244 ~vLL~GppGtGKT~la~ala~~l~~~~v~v~~s~l~ 279 (380)
.++|.||||+||+|.|+.||+.++.+. ++..++.
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g~~~--istGdll 35 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKGFVH--ISTGDIL 35 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCEE--EEHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCeE--EcHHHHH
Confidence 478899999999999999999998765 4444543
No 185
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.85 E-value=0.00092 Score=60.01 Aligned_cols=30 Identities=33% Similarity=0.483 Sum_probs=26.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhcCCeEEE
Q 016911 243 KGILLFGPPGTGKTMLAKAVATECKTTFFN 272 (380)
Q Consensus 243 ~~vLL~GppGtGKT~la~ala~~l~~~~v~ 272 (380)
..+.|.||+||||||+++.+++.++.+++.
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d 35 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEALQWHLLD 35 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCccc
Confidence 468899999999999999999999876654
No 186
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.84 E-value=0.00087 Score=58.30 Aligned_cols=31 Identities=26% Similarity=0.074 Sum_probs=27.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhc---CCeEEEEe
Q 016911 244 GILLFGPPGTGKTMLAKAVATEC---KTTFFNIS 274 (380)
Q Consensus 244 ~vLL~GppGtGKT~la~ala~~l---~~~~v~v~ 274 (380)
.+.|.|+|||||||+++.++..+ +.+++..+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d 35 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYR 35 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 47899999999999999999988 88887765
No 187
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=96.84 E-value=0.013 Score=60.34 Aligned_cols=66 Identities=15% Similarity=0.286 Sum_probs=40.6
Q ss_pred Ce-EEEEcCcchhhhhccccchhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCCCC--CchHHHHhcccceeEecCCC
Q 016911 302 PS-TIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPW--ELDAAMLRRLEKRVSFSLIA 378 (380)
Q Consensus 302 p~-ILfIDEiD~l~~~~~~~~~~~~~~~~i~~~Ll~~ldgl~~~~~~VlVIatTN~~~--~Ld~aLlrRF~~~I~~plPd 378 (380)
|. +|+|||+..+.... .......+..+...- +.-.+.+|.+|.++. .++..+++-|...+.|.+.+
T Consensus 297 P~ivlvIDE~~~ll~~~------~~~~~~~l~~Lar~g-----Ra~GI~LIlaTQrp~~dvl~~~i~~n~~~RI~lrv~s 365 (512)
T 2ius_A 297 PYIVVLVDEFADLMMTV------GKKVEELIARLAQKA-----RAAGIHLVLATQRPSVDVITGLIKANIPTRIAFTVSS 365 (512)
T ss_dssp CEEEEEEETHHHHHHHH------HHHHHHHHHHHHHHC-----GGGTEEEEEEESCCCTTTSCHHHHHHCCEEEEECCSS
T ss_pred CcEEEEEeCHHHHHhhh------hHHHHHHHHHHHHHh-----hhCCcEEEEEecCCccccccHHHHhhcCCeEEEEcCC
Confidence 44 89999998776421 111222333333222 222477788998887 58888888887777776543
No 188
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=96.82 E-value=0.00057 Score=61.36 Aligned_cols=30 Identities=23% Similarity=0.355 Sum_probs=26.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcCCeEEEE
Q 016911 244 GILLFGPPGTGKTMLAKAVATECKTTFFNI 273 (380)
Q Consensus 244 ~vLL~GppGtGKT~la~ala~~l~~~~v~v 273 (380)
.++|.|+||+||||+++.++..++.+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g~~~i~~ 31 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYGIPQIST 31 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEeH
Confidence 478999999999999999999998777654
No 189
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.82 E-value=0.0032 Score=63.54 Aligned_cols=73 Identities=18% Similarity=0.062 Sum_probs=46.8
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHhc---CCeEEEEecchhh----------hhhc----------cchHHHHHHHHHHH
Q 016911 241 PWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVV----------SKWR----------GDSEKLIKVLFELA 297 (380)
Q Consensus 241 ~~~~vLL~GppGtGKT~la~ala~~l---~~~~v~v~~s~l~----------~~~~----------ge~e~~l~~lf~~A 297 (380)
++..+++.||+|+||||++..+|..+ +..+..+++.... .... .............+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~~a 175 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIF 175 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHHHH
Confidence 46788999999999999999999766 5555555543110 0000 11223334445555
Q ss_pred HhcCCeEEEEcCcchh
Q 016911 298 RHHAPSTIFLDEIDAI 313 (380)
Q Consensus 298 ~~~~p~ILfIDEiD~l 313 (380)
....+++++||....+
T Consensus 176 ~~~~~DvvIIDTaGr~ 191 (433)
T 3kl4_A 176 VKNKMDIIIVDTAGRH 191 (433)
T ss_dssp TTTTCSEEEEEECCCS
T ss_pred HhcCCCEEEEECCCCc
Confidence 5556889999988654
No 190
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=96.81 E-value=0.001 Score=65.73 Aligned_cols=73 Identities=22% Similarity=0.309 Sum_probs=45.0
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHhcC----CeEEEEecc-hh--------hhh-hccchHHHHHHHHHHHHhcCCeE
Q 016911 239 LSPWKGILLFGPPGTGKTMLAKAVATECK----TTFFNISAS-SV--------VSK-WRGDSEKLIKVLFELARHHAPST 304 (380)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~la~ala~~l~----~~~v~v~~s-~l--------~~~-~~ge~e~~l~~lf~~A~~~~p~I 304 (380)
+.++..+++.||+|+||||+++++++.+. ..++.+... ++ +.. .++.....+...+..+....|++
T Consensus 133 ~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e~~~~~~~~~v~Q~~~g~~~~~~~~~l~~~L~~~pd~ 212 (372)
T 2ewv_A 133 HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQREVGEDTKSFADALRAALREDPDV 212 (372)
T ss_dssp TSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCSHHHHHHHTTSCCSE
T ss_pred hcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHhhhhccCceEEEeeecCCCHHHHHHHHHHHhhhCcCE
Confidence 35667899999999999999999998762 334333211 10 000 00101112244555566678999
Q ss_pred EEEcCcc
Q 016911 305 IFLDEID 311 (380)
Q Consensus 305 LfIDEiD 311 (380)
|++||+-
T Consensus 213 illdE~~ 219 (372)
T 2ewv_A 213 IFVGEMR 219 (372)
T ss_dssp EEESCCC
T ss_pred EEECCCC
Confidence 9999994
No 191
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=96.81 E-value=0.00078 Score=61.87 Aligned_cols=31 Identities=23% Similarity=0.514 Sum_probs=26.4
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHhcCCeEE
Q 016911 241 PWKGILLFGPPGTGKTMLAKAVATECKTTFF 271 (380)
Q Consensus 241 ~~~~vLL~GppGtGKT~la~ala~~l~~~~v 271 (380)
.+..+.|.||+|+||||+++.++..++....
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~ 56 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHL 56 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEe
Confidence 3568999999999999999999988876543
No 192
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.81 E-value=0.00085 Score=58.85 Aligned_cols=29 Identities=24% Similarity=0.547 Sum_probs=25.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcCCeEEE
Q 016911 244 GILLFGPPGTGKTMLAKAVATECKTTFFN 272 (380)
Q Consensus 244 ~vLL~GppGtGKT~la~ala~~l~~~~v~ 272 (380)
.+.|.|++|+||||+++.+++.++..++.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~~~~~~ 30 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLGYEIFK 30 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCCEEEC
T ss_pred EEEEECCCccCHHHHHHHHHHhcCCcEEc
Confidence 47899999999999999999999886653
No 193
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.75 E-value=0.00064 Score=59.00 Aligned_cols=35 Identities=20% Similarity=0.152 Sum_probs=27.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcC---CeEEEEecchh
Q 016911 244 GILLFGPPGTGKTMLAKAVATECK---TTFFNISASSV 278 (380)
Q Consensus 244 ~vLL~GppGtGKT~la~ala~~l~---~~~v~v~~s~l 278 (380)
.++|.|+||+||||+++.++..++ .++..++.++.
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~~~~~ 40 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGDF 40 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEEHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCceEEEEECChH
Confidence 588999999999999999999885 23445554444
No 194
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=96.74 E-value=0.0086 Score=60.13 Aligned_cols=39 Identities=26% Similarity=0.243 Sum_probs=30.7
Q ss_pred ccCCCCceEEEEcCCCCcHHHHHHHHHHhc----CCeEEEEec
Q 016911 237 GLLSPWKGILLFGPPGTGKTMLAKAVATEC----KTTFFNISA 275 (380)
Q Consensus 237 ~~~~~~~~vLL~GppGtGKT~la~ala~~l----~~~~v~v~~ 275 (380)
+++.++.-+++.|+||+|||+++..+|... +.++..++.
T Consensus 195 gGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~sl 237 (444)
T 2q6t_A 195 GTLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSL 237 (444)
T ss_dssp CCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEES
T ss_pred CCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 456788889999999999999999887643 456666554
No 195
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.74 E-value=0.0008 Score=59.56 Aligned_cols=30 Identities=23% Similarity=0.277 Sum_probs=25.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcCCeEEEEe
Q 016911 244 GILLFGPPGTGKTMLAKAVATECKTTFFNIS 274 (380)
Q Consensus 244 ~vLL~GppGtGKT~la~ala~~l~~~~v~v~ 274 (380)
.+.|.|++||||||+++.+++ ++.+++..+
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~g~~~i~~d 32 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-LGAYVLDAD 32 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-TTCEEEEHH
T ss_pred EEEEECCCCcCHHHHHHHHHH-CCCEEEEcc
Confidence 588999999999999999999 887765543
No 196
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.73 E-value=0.00061 Score=67.16 Aligned_cols=30 Identities=23% Similarity=0.566 Sum_probs=26.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhcCCeEEE
Q 016911 243 KGILLFGPPGTGKTMLAKAVATECKTTFFN 272 (380)
Q Consensus 243 ~~vLL~GppGtGKT~la~ala~~l~~~~v~ 272 (380)
.+++|.|+||+||||+++++|..++.+|+.
T Consensus 25 ~~i~l~G~~G~GKTTl~~~la~~l~~~f~~ 54 (359)
T 2ga8_A 25 VCVILVGSPGSGKSTIAEELCQIINEKYHT 54 (359)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHHhCCCeee
Confidence 469999999999999999999999887744
No 197
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=96.71 E-value=0.012 Score=65.09 Aligned_cols=50 Identities=12% Similarity=0.115 Sum_probs=39.0
Q ss_pred CccccccchHHHHHHHHHHHhccccCcccccccCCCCceEEEEcCCCCcHHHHHHHHHHh
Q 016911 206 VKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATE 265 (380)
Q Consensus 206 ~~~~~l~Gl~~~k~~L~~~l~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~ 265 (380)
.....++|.++.++.|.+.+...- ...+.+.|+|+.|+|||+||+.+++.
T Consensus 121 ~~~~~~vgR~~~~~~l~~~l~~~~----------~~~~~v~i~G~gG~GKTtLa~~~~~~ 170 (1249)
T 3sfz_A 121 QRPVIFVTRKKLVHAIQQKLWKLN----------GEPGWVTIYGMAGCGKSVLAAEAVRD 170 (1249)
T ss_dssp CCCSSCCCCHHHHHHHHHHHHTTT----------TSCEEEEEECSTTSSHHHHHHHHTCC
T ss_pred CCCceeccHHHHHHHHHHHHhhcc----------CCCCEEEEEeCCCCCHHHHHHHHhcC
Confidence 345678999999999988763210 23467889999999999999998765
No 198
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=96.70 E-value=0.00098 Score=64.75 Aligned_cols=73 Identities=16% Similarity=0.202 Sum_probs=47.1
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHhcC--CeEEEEecchhhh-----h---hccchHHHHHHHHHHHHhcCCeEEEEcC
Q 016911 240 SPWKGILLFGPPGTGKTMLAKAVATECK--TTFFNISASSVVS-----K---WRGDSEKLIKVLFELARHHAPSTIFLDE 309 (380)
Q Consensus 240 ~~~~~vLL~GppGtGKT~la~ala~~l~--~~~v~v~~s~l~~-----~---~~ge~e~~l~~lf~~A~~~~p~ILfIDE 309 (380)
.++..+++.||+|+||||++++++..+. ...+.++...... . ++.......+..+..|....|.+|++||
T Consensus 169 ~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e~~~~~~~~~i~~~~ggg~~~r~~la~aL~~~p~ilildE 248 (330)
T 2pt7_A 169 AIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIVFKHHKNYTQLFFGGNITSADCLKSCLRMRPDRIILGE 248 (330)
T ss_dssp HHTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCCCCCSSCSSEEEEECBTTBCHHHHHHHHTTSCCSEEEECC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeeccccccchhEEEEEeCCChhHHHHHHHHhhhCCCEEEEcC
Confidence 3457899999999999999999999873 2334444321100 0 1100122334456666677899999999
Q ss_pred cch
Q 016911 310 IDA 312 (380)
Q Consensus 310 iD~ 312 (380)
...
T Consensus 249 ~~~ 251 (330)
T 2pt7_A 249 LRS 251 (330)
T ss_dssp CCS
T ss_pred CCh
Confidence 854
No 199
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.70 E-value=0.0013 Score=57.52 Aligned_cols=31 Identities=19% Similarity=0.115 Sum_probs=26.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhc---CCeEEEEe
Q 016911 244 GILLFGPPGTGKTMLAKAVATEC---KTTFFNIS 274 (380)
Q Consensus 244 ~vLL~GppGtGKT~la~ala~~l---~~~~v~v~ 274 (380)
-+.|.|++||||||+++.+++.+ +.+++...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~~~ 35 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKR 35 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHCCC-EEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEee
Confidence 37899999999999999999998 88877554
No 200
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=96.69 E-value=0.0014 Score=63.83 Aligned_cols=33 Identities=33% Similarity=0.543 Sum_probs=29.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhcCCeEEEEec
Q 016911 243 KGILLFGPPGTGKTMLAKAVATECKTTFFNISA 275 (380)
Q Consensus 243 ~~vLL~GppGtGKT~la~ala~~l~~~~v~v~~ 275 (380)
..++|.||+|+|||++++.+|..++..++.++.
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~~~iis~Ds 38 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALPCELISVDS 38 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSCEEEEEECT
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCcEEeccc
Confidence 478999999999999999999999988888764
No 201
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.67 E-value=0.0012 Score=59.97 Aligned_cols=30 Identities=30% Similarity=0.548 Sum_probs=26.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcCCeEEEE
Q 016911 244 GILLFGPPGTGKTMLAKAVATECKTTFFNI 273 (380)
Q Consensus 244 ~vLL~GppGtGKT~la~ala~~l~~~~v~v 273 (380)
.++|.|+||+||||+++.++..++.+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg~~~i~~ 31 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYSLAHIES 31 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEch
Confidence 478999999999999999999998766544
No 202
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=96.67 E-value=0.0011 Score=59.01 Aligned_cols=36 Identities=25% Similarity=0.153 Sum_probs=28.8
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHhc-CCeEEEEe
Q 016911 239 LSPWKGILLFGPPGTGKTMLAKAVATEC-KTTFFNIS 274 (380)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~la~ala~~l-~~~~v~v~ 274 (380)
+.++..+.|.|++|+||||+++.+++.+ +..++..+
T Consensus 18 ~~~~~~i~i~G~~GsGKSTl~~~L~~~~~~~~~i~~D 54 (207)
T 2qt1_A 18 GSKTFIIGISGVTNSGKTTLAKNLQKHLPNCSVISQD 54 (207)
T ss_dssp SCCCEEEEEEESTTSSHHHHHHHHHTTSTTEEEEEGG
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHhcCCcEEEeCC
Confidence 4555678899999999999999999988 55555433
No 203
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=96.67 E-value=0.00099 Score=62.33 Aligned_cols=33 Identities=33% Similarity=0.502 Sum_probs=29.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhcCCeEEEEe
Q 016911 242 WKGILLFGPPGTGKTMLAKAVATECKTTFFNIS 274 (380)
Q Consensus 242 ~~~vLL~GppGtGKT~la~ala~~l~~~~v~v~ 274 (380)
+..+.|.|++|+||||+++.+|..++.+++..+
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~lg~~~~d~d 80 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSLGYTFFDCD 80 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHHTCEEEEHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCcEEeCc
Confidence 568999999999999999999999998876643
No 204
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.67 E-value=0.0011 Score=58.58 Aligned_cols=27 Identities=22% Similarity=0.097 Sum_probs=24.3
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhcCC
Q 016911 242 WKGILLFGPPGTGKTMLAKAVATECKT 268 (380)
Q Consensus 242 ~~~vLL~GppGtGKT~la~ala~~l~~ 268 (380)
+..++|.|+||+||||+++.++..++.
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~l~~ 30 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDWIEL 30 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHhh
Confidence 356899999999999999999998865
No 205
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=96.65 E-value=0.0099 Score=57.00 Aligned_cols=38 Identities=21% Similarity=0.100 Sum_probs=29.9
Q ss_pred cCCCCceEEEEcCCCCcHHHHHHHHHHhc---CCeEEEEec
Q 016911 238 LLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISA 275 (380)
Q Consensus 238 ~~~~~~~vLL~GppGtGKT~la~ala~~l---~~~~v~v~~ 275 (380)
++.++.-++|.|+||+|||+++..+|... +.+...++.
T Consensus 64 Gl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~sl 104 (315)
T 3bh0_A 64 GYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSL 104 (315)
T ss_dssp SBCTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEES
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEEC
Confidence 45778899999999999999999988654 446665554
No 206
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=96.61 E-value=0.0012 Score=58.10 Aligned_cols=27 Identities=30% Similarity=0.365 Sum_probs=24.1
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHhc
Q 016911 240 SPWKGILLFGPPGTGKTMLAKAVATEC 266 (380)
Q Consensus 240 ~~~~~vLL~GppGtGKT~la~ala~~l 266 (380)
.++..+.|.||+|+||||+++.++..+
T Consensus 4 ~~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 4 EKGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 456778999999999999999999877
No 207
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=96.61 E-value=0.0018 Score=60.09 Aligned_cols=32 Identities=31% Similarity=0.365 Sum_probs=27.7
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHhcCCeEE
Q 016911 240 SPWKGILLFGPPGTGKTMLAKAVATECKTTFF 271 (380)
Q Consensus 240 ~~~~~vLL~GppGtGKT~la~ala~~l~~~~v 271 (380)
.++..+.|.||+||||||+++.++..++..++
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~ 56 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAESLNWRLL 56 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcC
Confidence 34567899999999999999999999987664
No 208
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.60 E-value=0.00058 Score=60.59 Aligned_cols=28 Identities=25% Similarity=0.179 Sum_probs=24.4
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHhcCC
Q 016911 241 PWKGILLFGPPGTGKTMLAKAVATECKT 268 (380)
Q Consensus 241 ~~~~vLL~GppGtGKT~la~ala~~l~~ 268 (380)
.+..++|.|+|||||||+++.++..++.
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~~l~~ 36 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVEYLKN 36 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 3567999999999999999999998744
No 209
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.60 E-value=0.0012 Score=57.88 Aligned_cols=31 Identities=19% Similarity=0.171 Sum_probs=26.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhcCCeEEEE
Q 016911 242 WKGILLFGPPGTGKTMLAKAVATECKTTFFNI 273 (380)
Q Consensus 242 ~~~vLL~GppGtGKT~la~ala~~l~~~~v~v 273 (380)
+..+.|.|++||||||+++.++.. +.+++..
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~-g~~~id~ 38 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW-GYPVLDL 38 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT-TCCEEEH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC-CCEEEcc
Confidence 457899999999999999999998 7766543
No 210
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=96.60 E-value=0.001 Score=59.03 Aligned_cols=28 Identities=25% Similarity=0.305 Sum_probs=24.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcCCeEEE
Q 016911 244 GILLFGPPGTGKTMLAKAVATECKTTFFN 272 (380)
Q Consensus 244 ~vLL~GppGtGKT~la~ala~~l~~~~v~ 272 (380)
.+.|.||+||||||+++.++. ++.+++.
T Consensus 4 ~i~l~G~~GsGKST~~~~La~-lg~~~id 31 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD-LGVPLVD 31 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT-TTCCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHH-CCCcccc
Confidence 578999999999999999998 7877654
No 211
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=96.59 E-value=0.0014 Score=57.68 Aligned_cols=31 Identities=23% Similarity=0.419 Sum_probs=27.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcCCeEEEEe
Q 016911 244 GILLFGPPGTGKTMLAKAVATECKTTFFNIS 274 (380)
Q Consensus 244 ~vLL~GppGtGKT~la~ala~~l~~~~v~v~ 274 (380)
.+.|.|++|+||||+++.++..++.+++..+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg~~~~d~d 34 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALGVPYLSSG 34 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTCCEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCceeccc
Confidence 6889999999999999999999998776543
No 212
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.59 E-value=0.002 Score=56.27 Aligned_cols=39 Identities=23% Similarity=0.195 Sum_probs=29.8
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHhc---CCeEEEEecchh
Q 016911 240 SPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSV 278 (380)
Q Consensus 240 ~~~~~vLL~GppGtGKT~la~ala~~l---~~~~v~v~~s~l 278 (380)
.++..++|.|+||+||||+++.++..+ +.++..++...+
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~d~~ 52 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGDWA 52 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeHHHH
Confidence 345678999999999999999999987 344555554433
No 213
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.57 E-value=0.0014 Score=58.37 Aligned_cols=28 Identities=32% Similarity=0.513 Sum_probs=25.0
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHhcC
Q 016911 240 SPWKGILLFGPPGTGKTMLAKAVATECK 267 (380)
Q Consensus 240 ~~~~~vLL~GppGtGKT~la~ala~~l~ 267 (380)
.++..++|.||||+||||+++.++..++
T Consensus 10 ~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 10 ARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 4567899999999999999999998874
No 214
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.56 E-value=0.00066 Score=60.24 Aligned_cols=27 Identities=19% Similarity=0.124 Sum_probs=23.8
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHhcC
Q 016911 241 PWKGILLFGPPGTGKTMLAKAVATECK 267 (380)
Q Consensus 241 ~~~~vLL~GppGtGKT~la~ala~~l~ 267 (380)
.+..++|.|+|||||||+++.++..++
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~~l~ 34 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVEALC 34 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 356799999999999999999999763
No 215
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.55 E-value=0.0018 Score=60.10 Aligned_cols=31 Identities=23% Similarity=0.444 Sum_probs=27.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhcCCeEEE
Q 016911 242 WKGILLFGPPGTGKTMLAKAVATECKTTFFN 272 (380)
Q Consensus 242 ~~~vLL~GppGtGKT~la~ala~~l~~~~v~ 272 (380)
+..+.|.||||+||||+++.++..++.+++.
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~lg~~~~d 39 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARALGARYLD 39 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCccc
Confidence 3578999999999999999999999876644
No 216
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=96.52 E-value=0.0036 Score=57.46 Aligned_cols=37 Identities=27% Similarity=0.318 Sum_probs=29.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhcCCeEEEEecc-hhh
Q 016911 243 KGILLFGPPGTGKTMLAKAVATECKTTFFNISAS-SVV 279 (380)
Q Consensus 243 ~~vLL~GppGtGKT~la~ala~~l~~~~v~v~~s-~l~ 279 (380)
..+++.||+|+|||.++.+++...+.+.+.+... .+.
T Consensus 109 ~~~ll~~~tG~GKT~~a~~~~~~~~~~~liv~P~~~L~ 146 (237)
T 2fz4_A 109 KRGCIVLPTGSGKTHVAMAAINELSTPTLIVVPTLALA 146 (237)
T ss_dssp SEEEEEESSSTTHHHHHHHHHHHSCSCEEEEESSHHHH
T ss_pred CCEEEEeCCCCCHHHHHHHHHHHcCCCEEEEeCCHHHH
Confidence 3589999999999999999998887666665544 443
No 217
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=96.49 E-value=0.0013 Score=63.59 Aligned_cols=37 Identities=27% Similarity=0.448 Sum_probs=31.3
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhcCCeEEEEecchh
Q 016911 242 WKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSV 278 (380)
Q Consensus 242 ~~~vLL~GppGtGKT~la~ala~~l~~~~v~v~~s~l 278 (380)
+..+++.||+|+|||+|+..+|..++..++..+...+
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~qv 46 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKILPVELISVDSALI 46 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSCEEEEECCTTTT
T ss_pred CcEEEEECCCccCHHHHHHHHHHhCCCcEEecccccc
Confidence 3568899999999999999999999988877765544
No 218
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.48 E-value=0.0027 Score=58.60 Aligned_cols=38 Identities=16% Similarity=0.060 Sum_probs=30.5
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhcCCe--------EEEEecchhh
Q 016911 242 WKGILLFGPPGTGKTMLAKAVATECKTT--------FFNISASSVV 279 (380)
Q Consensus 242 ~~~vLL~GppGtGKT~la~ala~~l~~~--------~v~v~~s~l~ 279 (380)
+..+.|.|++||||||+++.++..++.+ ...++..++.
T Consensus 22 ~~iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~~ 67 (252)
T 1uj2_A 22 PFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFY 67 (252)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGB
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCccc
Confidence 3568899999999999999999999876 3356666554
No 219
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=96.48 E-value=0.0018 Score=63.39 Aligned_cols=35 Identities=29% Similarity=0.357 Sum_probs=30.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhcCCeEEEEecc
Q 016911 242 WKGILLFGPPGTGKTMLAKAVATECKTTFFNISAS 276 (380)
Q Consensus 242 ~~~vLL~GppGtGKT~la~ala~~l~~~~v~v~~s 276 (380)
+..++|.||+|+|||+|+..||..++..++..+.-
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~~l~~eiIs~Ds~ 74 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAAHFPLEVINSDKM 74 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTTSCEEEEECCSS
T ss_pred CceEEEECCCCCCHHHHHHHHHHHCCCcEEccccc
Confidence 35789999999999999999999999888766543
No 220
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.46 E-value=0.0015 Score=58.48 Aligned_cols=31 Identities=23% Similarity=0.316 Sum_probs=26.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhcCCeEEEE
Q 016911 243 KGILLFGPPGTGKTMLAKAVATECKTTFFNI 273 (380)
Q Consensus 243 ~~vLL~GppGtGKT~la~ala~~l~~~~v~v 273 (380)
..+.|+|++||||||+++.++..++.+++..
T Consensus 13 ~iIgltG~~GSGKSTva~~L~~~lg~~vid~ 43 (192)
T 2grj_A 13 MVIGVTGKIGTGKSTVCEILKNKYGAHVVNV 43 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCEEEEC
Confidence 4578999999999999999999988777553
No 221
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=96.46 E-value=0.0019 Score=56.87 Aligned_cols=27 Identities=26% Similarity=0.411 Sum_probs=23.7
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHhc
Q 016911 240 SPWKGILLFGPPGTGKTMLAKAVATEC 266 (380)
Q Consensus 240 ~~~~~vLL~GppGtGKT~la~ala~~l 266 (380)
.++..+.|.||+|+||||+++.++..+
T Consensus 5 ~~g~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 5 NKANLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 345678999999999999999999876
No 222
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.45 E-value=0.002 Score=57.78 Aligned_cols=31 Identities=26% Similarity=0.285 Sum_probs=26.5
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhcCCeEEEE
Q 016911 242 WKGILLFGPPGTGKTMLAKAVATECKTTFFNI 273 (380)
Q Consensus 242 ~~~vLL~GppGtGKT~la~ala~~l~~~~v~v 273 (380)
+..+.|.|++||||||+++.++. ++.+++..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~-lg~~~id~ 34 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD-LGINVIDA 34 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH-TTCEEEEH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH-cCCEEEEc
Confidence 35688999999999999999998 88777654
No 223
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.42 E-value=0.011 Score=56.55 Aligned_cols=37 Identities=30% Similarity=0.341 Sum_probs=28.7
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHhc----CCeEEEEecc
Q 016911 240 SPWKGILLFGPPGTGKTMLAKAVATEC----KTTFFNISAS 276 (380)
Q Consensus 240 ~~~~~vLL~GppGtGKT~la~ala~~l----~~~~v~v~~s 276 (380)
.++..+++.||+|+||||++..+|..+ |..+..+++.
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D 143 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTD 143 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecC
Confidence 456789999999999999999998765 4455555543
No 224
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.41 E-value=0.0021 Score=57.51 Aligned_cols=39 Identities=18% Similarity=0.261 Sum_probs=30.6
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHhcC----CeEEEEecchh
Q 016911 240 SPWKGILLFGPPGTGKTMLAKAVATECK----TTFFNISASSV 278 (380)
Q Consensus 240 ~~~~~vLL~GppGtGKT~la~ala~~l~----~~~v~v~~s~l 278 (380)
.++..++|.|++|+||||+++.++..++ .+++.++...+
T Consensus 23 ~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~~ 65 (211)
T 1m7g_A 23 QRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNI 65 (211)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChHH
Confidence 4557789999999999999999999774 45666765433
No 225
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=96.41 E-value=0.002 Score=56.33 Aligned_cols=26 Identities=23% Similarity=0.487 Sum_probs=23.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhcC
Q 016911 242 WKGILLFGPPGTGKTMLAKAVATECK 267 (380)
Q Consensus 242 ~~~vLL~GppGtGKT~la~ala~~l~ 267 (380)
+..+.|.||+|+|||||++.++....
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 46789999999999999999998763
No 226
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=96.40 E-value=0.0019 Score=57.86 Aligned_cols=28 Identities=32% Similarity=0.381 Sum_probs=24.5
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHhcC
Q 016911 240 SPWKGILLFGPPGTGKTMLAKAVATECK 267 (380)
Q Consensus 240 ~~~~~vLL~GppGtGKT~la~ala~~l~ 267 (380)
.++..+.|.||+|+||||+++.++..+.
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 3567789999999999999999998874
No 227
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=96.37 E-value=0.0026 Score=55.55 Aligned_cols=26 Identities=31% Similarity=0.528 Sum_probs=22.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhcCC
Q 016911 243 KGILLFGPPGTGKTMLAKAVATECKT 268 (380)
Q Consensus 243 ~~vLL~GppGtGKT~la~ala~~l~~ 268 (380)
..+.|.||+|+||||+++.++...+.
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~~~~g 28 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAAQLDN 28 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSSS
T ss_pred eEEEEECCCCCcHHHHHHHHhcccCC
Confidence 35789999999999999999987654
No 228
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.37 E-value=0.003 Score=57.62 Aligned_cols=33 Identities=27% Similarity=0.427 Sum_probs=28.5
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHhcCCeEEE
Q 016911 240 SPWKGILLFGPPGTGKTMLAKAVATECKTTFFN 272 (380)
Q Consensus 240 ~~~~~vLL~GppGtGKT~la~ala~~l~~~~v~ 272 (380)
.++..+.|.|++|+||||+++.++..++.+++.
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~~lg~~~~d 46 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAKDFGFTYLD 46 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHHHHCCEEEE
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHcCCceec
Confidence 455678999999999999999999999877654
No 229
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=96.34 E-value=0.014 Score=64.22 Aligned_cols=26 Identities=27% Similarity=0.314 Sum_probs=22.9
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHH
Q 016911 239 LSPWKGILLFGPPGTGKTMLAKAVAT 264 (380)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~la~ala~ 264 (380)
..++..++|+||.|+||||+.+.++.
T Consensus 670 ~~~g~i~~ItGPNGaGKSTlLr~i~~ 695 (918)
T 3thx_B 670 EDSERVMIITGPNMGGKSSYIKQVAL 695 (918)
T ss_dssp TTSCCEEEEESCCCHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCchHHHHHHHHH
Confidence 45677899999999999999999874
No 230
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=96.33 E-value=0.0023 Score=57.21 Aligned_cols=31 Identities=35% Similarity=0.536 Sum_probs=27.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhcCCeEEEE
Q 016911 243 KGILLFGPPGTGKTMLAKAVATECKTTFFNI 273 (380)
Q Consensus 243 ~~vLL~GppGtGKT~la~ala~~l~~~~v~v 273 (380)
..+.|.|++|+||||+++.++..++.+++..
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~~~g~~~~~~ 34 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVASELSMIYVDT 34 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHTTCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCceecC
Confidence 4689999999999999999999999877654
No 231
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=96.32 E-value=0.01 Score=60.87 Aligned_cols=37 Identities=22% Similarity=0.215 Sum_probs=26.8
Q ss_pred CCCCceEEEEcCCCCcHHHHHHH--HHHhc--CCeEEEEec
Q 016911 239 LSPWKGILLFGPPGTGKTMLAKA--VATEC--KTTFFNISA 275 (380)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~la~a--la~~l--~~~~v~v~~ 275 (380)
+.++..++|.||+|+|||||++. ++... +..-+.++.
T Consensus 36 i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g 76 (525)
T 1tf7_A 36 LPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTF 76 (525)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEES
T ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEE
Confidence 45678899999999999999999 44543 233444443
No 232
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=96.29 E-value=0.0056 Score=61.13 Aligned_cols=32 Identities=19% Similarity=0.263 Sum_probs=26.9
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHhcCCeEEE
Q 016911 241 PWKGILLFGPPGTGKTMLAKAVATECKTTFFN 272 (380)
Q Consensus 241 ~~~~vLL~GppGtGKT~la~ala~~l~~~~v~ 272 (380)
.+..++|.|+||+||||+++.++..++..++.
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~~~~~~~i~ 288 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLVSAGYVHVN 288 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTGGGTCEECC
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhcCcEEEc
Confidence 44678899999999999999999998765543
No 233
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=96.27 E-value=0.0026 Score=56.50 Aligned_cols=32 Identities=28% Similarity=0.244 Sum_probs=26.2
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHhcC--CeEE
Q 016911 240 SPWKGILLFGPPGTGKTMLAKAVATECK--TTFF 271 (380)
Q Consensus 240 ~~~~~vLL~GppGtGKT~la~ala~~l~--~~~v 271 (380)
.++..+.|.||+|+||||+++.+++.++ ..++
T Consensus 4 ~~~~~i~i~G~~GsGKSTl~~~l~~~~~~~i~~v 37 (211)
T 3asz_A 4 PKPFVIGIAGGTASGKTTLAQALARTLGERVALL 37 (211)
T ss_dssp -CCEEEEEEESTTSSHHHHHHHHHHHHGGGEEEE
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHhCCCeEEE
Confidence 3456788999999999999999999887 4444
No 234
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=96.24 E-value=0.0024 Score=57.08 Aligned_cols=28 Identities=29% Similarity=0.481 Sum_probs=24.9
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHhcC
Q 016911 240 SPWKGILLFGPPGTGKTMLAKAVATECK 267 (380)
Q Consensus 240 ~~~~~vLL~GppGtGKT~la~ala~~l~ 267 (380)
.++..+.|.||+|+|||||++.++..+.
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4567889999999999999999999875
No 235
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=96.23 E-value=0.0023 Score=57.12 Aligned_cols=26 Identities=35% Similarity=0.520 Sum_probs=22.1
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHhc
Q 016911 241 PWKGILLFGPPGTGKTMLAKAVATEC 266 (380)
Q Consensus 241 ~~~~vLL~GppGtGKT~la~ala~~l 266 (380)
+++.+.|.||+|+|||||++.++..+
T Consensus 3 ~g~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp --CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 55789999999999999999998754
No 236
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=96.22 E-value=0.016 Score=59.42 Aligned_cols=76 Identities=20% Similarity=0.237 Sum_probs=49.2
Q ss_pred cCCCCceEEEEcCCCCcHHHHHHHHHHhc---CCeEEEEecchh----hhh---------------hc---------cch
Q 016911 238 LLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSV----VSK---------------WR---------GDS 286 (380)
Q Consensus 238 ~~~~~~~vLL~GppGtGKT~la~ala~~l---~~~~v~v~~s~l----~~~---------------~~---------ge~ 286 (380)
.+.++..++|.||+|+|||||++.++... +.+.+.+...+- ... .. -..
T Consensus 277 ~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~~~ee~~~~l~~~~~~~g~~~~~~~~~g~~~~~~~~p~~LS~ 356 (525)
T 1tf7_A 277 GFFKDSIILATGATGTGKTLLVSRFVENACANKERAILFAYEESRAQLLRNAYSWGMDFEEMERQNLLKIVCAYPESAGL 356 (525)
T ss_dssp SEESSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEESSSCHHHHHHHHHTTSCCHHHHHHTTSEEECCCCGGGSCH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEEEeCCHHHHHHHHHHcCCCHHHHHhCCCEEEEEeccccCCH
Confidence 45677889999999999999999998765 334444433211 000 00 023
Q ss_pred HHHHHHHHHHHHhcCCeEEEEcCcchh
Q 016911 287 EKLIKVLFELARHHAPSTIFLDEIDAI 313 (380)
Q Consensus 287 e~~l~~lf~~A~~~~p~ILfIDEiD~l 313 (380)
....+.+...+....|.+|+||=+..+
T Consensus 357 g~~q~~~~a~~l~~~p~llilDp~~~L 383 (525)
T 1tf7_A 357 EDHLQIIKSEINDFKPARIAIDSLSAL 383 (525)
T ss_dssp HHHHHHHHHHHHTTCCSEEEEECHHHH
T ss_pred HHHHHHHHHHHHhhCCCEEEEcChHHH
Confidence 445566667777788999999944444
No 237
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=96.22 E-value=0.0021 Score=60.46 Aligned_cols=29 Identities=31% Similarity=0.377 Sum_probs=24.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhc-CCeEE
Q 016911 243 KGILLFGPPGTGKTMLAKAVATEC-KTTFF 271 (380)
Q Consensus 243 ~~vLL~GppGtGKT~la~ala~~l-~~~~v 271 (380)
..++|.|+||+||||+++.++..+ +..++
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~~~~~~~i 32 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAKNPGFYNI 32 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSTTEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHhCCCcEEe
Confidence 468999999999999999999874 55444
No 238
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=96.20 E-value=0.0069 Score=54.28 Aligned_cols=34 Identities=15% Similarity=0.007 Sum_probs=26.0
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHhc---CCeEEEEe
Q 016911 241 PWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNIS 274 (380)
Q Consensus 241 ~~~~vLL~GppGtGKT~la~ala~~l---~~~~v~v~ 274 (380)
++.-.+++||+|+||||.+..++..+ +..+..+.
T Consensus 7 ~g~i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~k 43 (191)
T 1xx6_A 7 HGWVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFK 43 (191)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEE
Confidence 45678899999999999988887766 55555553
No 239
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=96.18 E-value=0.038 Score=48.37 Aligned_cols=23 Identities=39% Similarity=0.624 Sum_probs=20.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHh
Q 016911 243 KGILLFGPPGTGKTMLAKAVATE 265 (380)
Q Consensus 243 ~~vLL~GppGtGKT~la~ala~~ 265 (380)
.++++.+|+|+|||.++...+..
T Consensus 49 ~~~li~~~tGsGKT~~~~~~~~~ 71 (216)
T 3b6e_A 49 KNIIICLPTGSGKTRVAVYIAKD 71 (216)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHH
T ss_pred CCEEEEcCCCCCHHHHHHHHHHH
Confidence 57999999999999998877654
No 240
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=96.16 E-value=0.02 Score=55.58 Aligned_cols=27 Identities=26% Similarity=0.197 Sum_probs=24.2
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHhc
Q 016911 240 SPWKGILLFGPPGTGKTMLAKAVATEC 266 (380)
Q Consensus 240 ~~~~~vLL~GppGtGKT~la~ala~~l 266 (380)
.++..+.|.||+|+||||+++.+|..+
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l 153 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWL 153 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 456789999999999999999999876
No 241
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=96.15 E-value=0.0033 Score=56.13 Aligned_cols=28 Identities=18% Similarity=0.369 Sum_probs=23.9
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHhc
Q 016911 239 LSPWKGILLFGPPGTGKTMLAKAVATEC 266 (380)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~la~ala~~l 266 (380)
+.++..+.|.||+|+|||||+++++..+
T Consensus 17 i~~Gei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 17 AAVGRVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp --CCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3566789999999999999999999876
No 242
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=96.14 E-value=0.025 Score=49.50 Aligned_cols=18 Identities=33% Similarity=0.340 Sum_probs=15.7
Q ss_pred CceEEEEcCCCCcHHHHH
Q 016911 242 WKGILLFGPPGTGKTMLA 259 (380)
Q Consensus 242 ~~~vLL~GppGtGKT~la 259 (380)
++.+++.+|+|+|||..+
T Consensus 38 ~~~~li~~~TGsGKT~~~ 55 (207)
T 2gxq_A 38 GKDLIGQARTGTGKTLAF 55 (207)
T ss_dssp TCCEEEECCTTSCHHHHH
T ss_pred CCCEEEECCCCChHHHHH
Confidence 367999999999999864
No 243
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.12 E-value=0.012 Score=52.24 Aligned_cols=37 Identities=16% Similarity=0.109 Sum_probs=28.6
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHhc---CCeEEEEecc
Q 016911 240 SPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISAS 276 (380)
Q Consensus 240 ~~~~~vLL~GppGtGKT~la~ala~~l---~~~~v~v~~s 276 (380)
.++..+.|.|++|+||||+++.++..+ +.+++..+..
T Consensus 20 ~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d 59 (201)
T 1rz3_A 20 AGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMD 59 (201)
T ss_dssp SSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGG
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccC
Confidence 345678899999999999999999876 5555555433
No 244
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=96.11 E-value=0.024 Score=62.37 Aligned_cols=26 Identities=15% Similarity=0.147 Sum_probs=22.1
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHH
Q 016911 239 LSPWKGILLFGPPGTGKTMLAKAVAT 264 (380)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~la~ala~ 264 (380)
..++..++|+||.|+||||+++.++.
T Consensus 659 ~~~g~i~~ItGpNGsGKSTlLr~ial 684 (934)
T 3thx_A 659 KDKQMFHIITGPNMGGKSTYIRQTGV 684 (934)
T ss_dssp TTTBCEEEEECCTTSSHHHHHHHHHH
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 34567899999999999999999943
No 245
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=96.06 E-value=0.0033 Score=59.36 Aligned_cols=31 Identities=19% Similarity=0.243 Sum_probs=25.7
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhcCCeEEEE
Q 016911 242 WKGILLFGPPGTGKTMLAKAVATECKTTFFNI 273 (380)
Q Consensus 242 ~~~vLL~GppGtGKT~la~ala~~l~~~~v~v 273 (380)
+..+.|.|++||||||+++.++ .++.+++..
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La-~lg~~~id~ 105 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLK-NLGAYIIDS 105 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHH-HHTCEEEEH
T ss_pred CEEEEEECCCCCCHHHHHHHHH-HCCCcEEeh
Confidence 3568899999999999999999 578766543
No 246
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=96.06 E-value=0.025 Score=56.98 Aligned_cols=39 Identities=21% Similarity=0.064 Sum_probs=31.1
Q ss_pred ccCCCCceEEEEcCCCCcHHHHHHHHHHhc---CCeEEEEec
Q 016911 237 GLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISA 275 (380)
Q Consensus 237 ~~~~~~~~vLL~GppGtGKT~la~ala~~l---~~~~v~v~~ 275 (380)
+++.++.-+++.|+||+|||+++..+|... +.++..++.
T Consensus 192 gGl~~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSl 233 (444)
T 3bgw_A 192 YGYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSL 233 (444)
T ss_dssp SSBCSSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECS
T ss_pred CCCCCCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEEC
Confidence 356788889999999999999998887654 556666654
No 247
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=96.06 E-value=0.024 Score=58.13 Aligned_cols=28 Identities=29% Similarity=0.226 Sum_probs=25.1
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHhc
Q 016911 239 LSPWKGILLFGPPGTGKTMLAKAVATEC 266 (380)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~la~ala~~l 266 (380)
+.++..+.|.|++|+||||+++.|+..+
T Consensus 290 i~~GeVI~LVGpNGSGKTTLl~~LAgll 317 (503)
T 2yhs_A 290 GKAPFVILMVGVNGVGKTTTIGKLARQF 317 (503)
T ss_dssp SCTTEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCcccHHHHHHHHHHHh
Confidence 5667789999999999999999999876
No 248
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=96.05 E-value=0.0035 Score=54.98 Aligned_cols=25 Identities=40% Similarity=0.660 Sum_probs=22.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhcC
Q 016911 243 KGILLFGPPGTGKTMLAKAVATECK 267 (380)
Q Consensus 243 ~~vLL~GppGtGKT~la~ala~~l~ 267 (380)
+.+.|.||+|+||||+++.++..+.
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 4578999999999999999998763
No 249
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=96.03 E-value=0.025 Score=54.52 Aligned_cols=37 Identities=24% Similarity=0.197 Sum_probs=29.4
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHhc---CCeEEEEec
Q 016911 239 LSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISA 275 (380)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~la~ala~~l---~~~~v~v~~ 275 (380)
..++..+++.|++|+||||++..+|..+ +..+..+++
T Consensus 102 ~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~ 141 (320)
T 1zu4_A 102 ENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAA 141 (320)
T ss_dssp TTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 4566789999999999999999999876 455555554
No 250
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=96.03 E-value=0.0038 Score=56.55 Aligned_cols=28 Identities=29% Similarity=0.514 Sum_probs=24.1
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHhc
Q 016911 239 LSPWKGILLFGPPGTGKTMLAKAVATEC 266 (380)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~la~ala~~l 266 (380)
+.++..+.|.||+|+|||||++.+++.+
T Consensus 20 i~~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 20 MNNIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp --CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 4667789999999999999999999876
No 251
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=96.01 E-value=0.0046 Score=53.64 Aligned_cols=28 Identities=25% Similarity=0.262 Sum_probs=25.0
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHhc
Q 016911 239 LSPWKGILLFGPPGTGKTMLAKAVATEC 266 (380)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~la~ala~~l 266 (380)
+.++..+.|.||.|+|||||++.++..+
T Consensus 30 i~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 30 TEKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp CSSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 3566789999999999999999999987
No 252
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=96.00 E-value=0.051 Score=48.26 Aligned_cols=17 Identities=35% Similarity=0.341 Sum_probs=15.3
Q ss_pred CceEEEEcCCCCcHHHH
Q 016911 242 WKGILLFGPPGTGKTML 258 (380)
Q Consensus 242 ~~~vLL~GppGtGKT~l 258 (380)
++.+++.+|+|+|||..
T Consensus 51 ~~~~lv~~pTGsGKT~~ 67 (224)
T 1qde_A 51 GHDVLAQAQSGTGKTGT 67 (224)
T ss_dssp TCCEEEECCTTSSHHHH
T ss_pred CCCEEEECCCCCcHHHH
Confidence 46899999999999987
No 253
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=95.98 E-value=0.029 Score=57.66 Aligned_cols=44 Identities=16% Similarity=0.039 Sum_probs=34.5
Q ss_pred cchHHHHHHHHHHHhccccCcccccccCCCCceEEEEcCCCCcHHHHHHHHHH
Q 016911 212 KGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVAT 264 (380)
Q Consensus 212 ~Gl~~~k~~L~~~l~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~ 264 (380)
+|.+..++.+.+.+...- ....+.+.|+|++|+|||+||+.+++
T Consensus 131 ~GR~~~~~~l~~~L~~~~---------~~~~~vv~I~G~gGvGKTtLA~~v~~ 174 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMC---------DLDSFFLFLHGRAGSGKSVIASQALS 174 (549)
T ss_dssp CCCHHHHHHHHHHHHHHT---------TSSSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhccc---------CCCceEEEEEcCCCCCHHHHHHHHHH
Confidence 499999998888763210 12346788999999999999999996
No 254
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=95.98 E-value=0.016 Score=59.67 Aligned_cols=38 Identities=18% Similarity=0.201 Sum_probs=29.1
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHhc---CCeEEEEecchh
Q 016911 241 PWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSV 278 (380)
Q Consensus 241 ~~~~vLL~GppGtGKT~la~ala~~l---~~~~v~v~~s~l 278 (380)
.+..+++.|.||+||||+++.++..+ +.....++..++
T Consensus 34 ~~~lIvlvGlpGSGKSTia~~La~~L~~~~~d~~v~s~D~~ 74 (520)
T 2axn_A 34 SPTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGEY 74 (520)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEecccHH
Confidence 34568899999999999999999988 444445565544
No 255
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=95.96 E-value=0.022 Score=51.32 Aligned_cols=35 Identities=20% Similarity=0.159 Sum_probs=26.8
Q ss_pred CCceEEEEcCCCCcHH-HHHHHHHHhc--CCeEEEEec
Q 016911 241 PWKGILLFGPPGTGKT-MLAKAVATEC--KTTFFNISA 275 (380)
Q Consensus 241 ~~~~vLL~GppGtGKT-~la~ala~~l--~~~~v~v~~ 275 (380)
.+.-.+++||.|+||| .|++++.+.. +..++.++.
T Consensus 19 ~g~l~fiyG~MgsGKTt~Ll~~i~n~~~~~~kvl~~kp 56 (195)
T 1w4r_A 19 RGQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKY 56 (195)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEcc
Confidence 4567889999999999 7888887644 566666653
No 256
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=95.96 E-value=0.0057 Score=59.31 Aligned_cols=34 Identities=21% Similarity=0.268 Sum_probs=28.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhcCCeEEEEecc
Q 016911 243 KGILLFGPPGTGKTMLAKAVATECKTTFFNISAS 276 (380)
Q Consensus 243 ~~vLL~GppGtGKT~la~ala~~l~~~~v~v~~s 276 (380)
..++|.||+|+|||+|+..+|..++..++..+..
T Consensus 4 ~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~ 37 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAKRLNGEVISGDSM 37 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHTTTEEEEECCGG
T ss_pred cEEEEECCCcCCHHHHHHHHHHhCccceeecCcc
Confidence 4678999999999999999999998777665543
No 257
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=95.96 E-value=0.0048 Score=56.14 Aligned_cols=34 Identities=21% Similarity=0.243 Sum_probs=27.7
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHhcCCeEEEEe
Q 016911 240 SPWKGILLFGPPGTGKTMLAKAVATECKTTFFNIS 274 (380)
Q Consensus 240 ~~~~~vLL~GppGtGKT~la~ala~~l~~~~v~v~ 274 (380)
..++.++|.||+|+|||++|..++...+ .++..+
T Consensus 32 ~~g~~ilI~GpsGsGKStLA~~La~~g~-~iIsdD 65 (205)
T 2qmh_A 32 IYGLGVLITGDSGVGKSETALELVQRGH-RLIADD 65 (205)
T ss_dssp ETTEEEEEECCCTTTTHHHHHHHHTTTC-EEEESS
T ss_pred ECCEEEEEECCCCCCHHHHHHHHHHhCC-eEEecc
Confidence 3457899999999999999999999875 554433
No 258
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=95.96 E-value=0.054 Score=49.07 Aligned_cols=22 Identities=23% Similarity=0.312 Sum_probs=18.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHH
Q 016911 242 WKGILLFGPPGTGKTMLAKAVA 263 (380)
Q Consensus 242 ~~~vLL~GppGtGKT~la~ala 263 (380)
+..+++.||+|||||++...+.
T Consensus 76 g~~~~i~g~TGsGKTt~~~~~~ 97 (235)
T 3llm_A 76 NSVVIIRGATGCGKTTQVPQFI 97 (235)
T ss_dssp CSEEEEECCTTSSHHHHHHHHH
T ss_pred CCEEEEEeCCCCCcHHhHHHHH
Confidence 3689999999999998766553
No 259
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=95.95 E-value=0.0044 Score=60.62 Aligned_cols=33 Identities=27% Similarity=0.370 Sum_probs=28.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhcCCeEEEEec
Q 016911 243 KGILLFGPPGTGKTMLAKAVATECKTTFFNISA 275 (380)
Q Consensus 243 ~~vLL~GppGtGKT~la~ala~~l~~~~v~v~~ 275 (380)
..++|.||+|+|||++++.+|..++..++..+.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~~~iis~Ds 40 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFNGEIISGDS 40 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTTEEEEECCS
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcCCceecccc
Confidence 468899999999999999999999876665543
No 260
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=95.95 E-value=0.0046 Score=63.67 Aligned_cols=72 Identities=19% Similarity=0.284 Sum_probs=44.8
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHhcC--CeEEEEecch-hhhh---h--------ccchHHHHHHHHHHHHhcCCeEE
Q 016911 240 SPWKGILLFGPPGTGKTMLAKAVATECK--TTFFNISASS-VVSK---W--------RGDSEKLIKVLFELARHHAPSTI 305 (380)
Q Consensus 240 ~~~~~vLL~GppGtGKT~la~ala~~l~--~~~v~v~~s~-l~~~---~--------~ge~e~~l~~lf~~A~~~~p~IL 305 (380)
..+.++++.||+|+||||+++++++.+. ...+.+.... +... + .+............+....|+++
T Consensus 258 ~~g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~E~~~~~~~~v~~~~r~~~~~~~~~~~~~l~~~LR~~PD~i 337 (511)
T 2oap_1 258 EHKFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTREIKLYHENWIAEVTRTGMGEGEIDMYDLLRAALRQRPDYI 337 (511)
T ss_dssp HTTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCCCSSEEEEECBCCSSSCCBCHHHHHHTTGGGCCSEE
T ss_pred hCCCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcccccCCCCCeEEEEeecccccCCcCHHHHHHHhhccCCCeE
Confidence 3556799999999999999999999873 2344443322 1100 0 01111122334445556789999
Q ss_pred EEcCcc
Q 016911 306 FLDEID 311 (380)
Q Consensus 306 fIDEiD 311 (380)
+++|+-
T Consensus 338 ivgEir 343 (511)
T 2oap_1 338 IVGEVR 343 (511)
T ss_dssp EESCCC
T ss_pred EeCCcC
Confidence 999984
No 261
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=95.94 E-value=0.04 Score=56.02 Aligned_cols=39 Identities=8% Similarity=-0.147 Sum_probs=30.5
Q ss_pred ccCCCCceEEEEcCCCCcHHHHHHHHHHhc----CCeEEEEec
Q 016911 237 GLLSPWKGILLFGPPGTGKTMLAKAVATEC----KTTFFNISA 275 (380)
Q Consensus 237 ~~~~~~~~vLL~GppGtGKT~la~ala~~l----~~~~v~v~~ 275 (380)
+++.++..++|.|+||+|||+++..+|... +.++..++.
T Consensus 237 gGl~~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~ 279 (503)
T 1q57_A 237 LGARGGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAML 279 (503)
T ss_dssp CCCCTTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEES
T ss_pred cccCCCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEec
Confidence 346778889999999999999999887654 446666554
No 262
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=95.91 E-value=0.017 Score=58.41 Aligned_cols=90 Identities=23% Similarity=0.379 Sum_probs=59.4
Q ss_pred chHHHHHHHHHHHHhcCCeEEEEcCcchhhhhccccchhhHHH-HHHHHHHHHHhcCCc-------cCCCcEEEEEEe--
Q 016911 285 DSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEAS-RRLKTELLIQMDGLT-------QSDELVFVLAAT-- 354 (380)
Q Consensus 285 e~e~~l~~lf~~A~~~~p~ILfIDEiD~l~~~~~~~~~~~~~~-~~i~~~Ll~~ldgl~-------~~~~~VlVIatT-- 354 (380)
..+...+.....|.. .+++++||+|++...... ...+.+ .-+++.||..+++-. -...++++|+|.
T Consensus 236 ~~~~~~~~ai~~ae~--~~il~~DEidki~~~~~~--~~~D~s~egvq~aLL~~le~~~~~~~~~~~d~~~ilfI~~gaf 311 (444)
T 1g41_A 236 NPEELKQKAIDAVEQ--NGIVFIDEIDKICKKGEY--SGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIASGAF 311 (444)
T ss_dssp CHHHHHHHHHHHHHH--HCEEEEETGGGGSCCSSC--SSSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEEEECC
T ss_pred CHHHHHHHHHHHhcc--CCeeeHHHHHHHhhccCC--CCCCchHHHHHHHHHHHhcccccccccceecCCcEEEEecccc
Confidence 345556666666633 259999999999865331 122222 346678888888742 135668899887
Q ss_pred --CCCCCchHHHHhcccceeEecCCC
Q 016911 355 --NLPWELDAAMLRRLEKRVSFSLIA 378 (380)
Q Consensus 355 --N~~~~Ld~aLlrRF~~~I~~plPd 378 (380)
+.+.++-|+|++||+.++.|+-.+
T Consensus 312 ~~~~~~dlipel~~R~~i~i~l~~lt 337 (444)
T 1g41_A 312 QVARPSDLIPELQGRLPIRVELTALS 337 (444)
T ss_dssp SSCCGGGSCHHHHTTCCEEEECCCCC
T ss_pred ccCChhhcchHHhcccceeeeCCCCC
Confidence 244456689999999877776544
No 263
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=95.86 E-value=0.02 Score=52.45 Aligned_cols=35 Identities=11% Similarity=-0.090 Sum_probs=26.1
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHhc---CCeEEEEec
Q 016911 241 PWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISA 275 (380)
Q Consensus 241 ~~~~vLL~GppGtGKT~la~ala~~l---~~~~v~v~~ 275 (380)
++.-.+++||.|+||||.+..++..+ +..++.+.+
T Consensus 27 ~G~l~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k~ 64 (214)
T 2j9r_A 27 NGWIEVICGSMFSGKSEELIRRVRRTQFAKQHAIVFKP 64 (214)
T ss_dssp SCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEe
Confidence 34556789999999999988887655 566666653
No 264
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=95.84 E-value=0.011 Score=56.56 Aligned_cols=28 Identities=25% Similarity=0.255 Sum_probs=25.0
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHhc
Q 016911 239 LSPWKGILLFGPPGTGKTMLAKAVATEC 266 (380)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~la~ala~~l 266 (380)
..++..+.|.||+|+||||+++.+|..+
T Consensus 97 ~~~g~vi~lvG~nGsGKTTll~~Lag~l 124 (302)
T 3b9q_A 97 FRKPAVIMIVGVNGGGKTTSLGKLAHRL 124 (302)
T ss_dssp SSSCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4567789999999999999999999876
No 265
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=95.83 E-value=0.032 Score=57.34 Aligned_cols=36 Identities=25% Similarity=0.200 Sum_probs=27.6
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHhc---CCeEEEEec
Q 016911 240 SPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISA 275 (380)
Q Consensus 240 ~~~~~vLL~GppGtGKT~la~ala~~l---~~~~v~v~~ 275 (380)
.++..+++.|+||+||||++..+|..+ +..+..+++
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~ 137 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICA 137 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEec
Confidence 345689999999999999999999766 555666655
No 266
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=95.83 E-value=0.0067 Score=54.17 Aligned_cols=24 Identities=42% Similarity=0.696 Sum_probs=21.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhc
Q 016911 243 KGILLFGPPGTGKTMLAKAVATEC 266 (380)
Q Consensus 243 ~~vLL~GppGtGKT~la~ala~~l 266 (380)
+.++|.||+|+|||||++.+....
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC
Confidence 458999999999999999998765
No 267
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=95.81 E-value=0.0057 Score=54.91 Aligned_cols=30 Identities=20% Similarity=0.267 Sum_probs=27.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhcCCeEEE
Q 016911 243 KGILLFGPPGTGKTMLAKAVATECKTTFFN 272 (380)
Q Consensus 243 ~~vLL~GppGtGKT~la~ala~~l~~~~v~ 272 (380)
..+.|.|++|||||++++.+|..++.+|+.
T Consensus 7 ~iI~i~g~~GsGk~ti~~~la~~lg~~~~D 36 (201)
T 3fdi_A 7 IIIAIGREFGSGGHLVAKKLAEHYNIPLYS 36 (201)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHTTCCEEC
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHhCcCEEC
Confidence 358899999999999999999999999874
No 268
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=95.79 E-value=0.0058 Score=55.75 Aligned_cols=29 Identities=21% Similarity=0.310 Sum_probs=24.4
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHhcC
Q 016911 239 LSPWKGILLFGPPGTGKTMLAKAVATECK 267 (380)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~la~ala~~l~ 267 (380)
.+++..+.|.||+|+|||||++.++....
T Consensus 13 ~~~G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 13 MAQGTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp --CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 35667899999999999999999998764
No 269
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=95.78 E-value=0.012 Score=59.11 Aligned_cols=70 Identities=19% Similarity=0.251 Sum_probs=40.8
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHhcC---CeEEEEecc-hhhhh------hccchHHHHHHHHHHHHhcCCeEEEEcCc
Q 016911 241 PWKGILLFGPPGTGKTMLAKAVATECK---TTFFNISAS-SVVSK------WRGDSEKLIKVLFELARHHAPSTIFLDEI 310 (380)
Q Consensus 241 ~~~~vLL~GppGtGKT~la~ala~~l~---~~~v~v~~s-~l~~~------~~ge~e~~l~~lf~~A~~~~p~ILfIDEi 310 (380)
++..+++.||+|+||||+++++++.++ ..++...-. +..-. ...............+....|+++++.|+
T Consensus 166 ~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ie~~~~~~~q~~v~~~~g~~f~~~lr~~Lrq~pd~i~vgEi 245 (418)
T 1p9r_A 166 PHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFDIDGIGQTQVNPRVDMTFARGLRAILRQDPDVVMVGEI 245 (418)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSCCSSSEEEECBGGGTBCHHHHHHHHGGGCCSEEEESCC
T ss_pred cCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccchhccCCcceEEEccccCcCHHHHHHHHhccCCCeEEEcCc
Confidence 456789999999999999999999873 234333211 11000 00000011222334444567899999985
No 270
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=95.75 E-value=0.09 Score=46.54 Aligned_cols=23 Identities=22% Similarity=0.170 Sum_probs=18.3
Q ss_pred CceEEEEcCCCCcHHHHHHHHHH
Q 016911 242 WKGILLFGPPGTGKTMLAKAVAT 264 (380)
Q Consensus 242 ~~~vLL~GppGtGKT~la~ala~ 264 (380)
++.+++.+|+|+|||..+...+-
T Consensus 51 ~~~~li~~~TGsGKT~~~~~~~~ 73 (220)
T 1t6n_A 51 GMDVLCQAKSGMGKTAVFVLATL 73 (220)
T ss_dssp TCCEEEECCTTSCHHHHHHHHHH
T ss_pred CCCEEEECCCCCchhhhhhHHHH
Confidence 36799999999999987655443
No 271
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=95.75 E-value=0.031 Score=60.53 Aligned_cols=26 Identities=19% Similarity=0.304 Sum_probs=22.9
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHh
Q 016911 240 SPWKGILLFGPPGTGKTMLAKAVATE 265 (380)
Q Consensus 240 ~~~~~vLL~GppGtGKT~la~ala~~ 265 (380)
.++..++|+||.|+||||+++.++..
T Consensus 605 ~~g~i~~ItGpNGsGKSTlLr~iagl 630 (800)
T 1wb9_A 605 PQRRMLIITGPNMGGKSTYMRQTALI 630 (800)
T ss_dssp SSSCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCChHHHHHHHHHH
Confidence 45678999999999999999999864
No 272
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=95.69 E-value=0.0067 Score=54.74 Aligned_cols=27 Identities=22% Similarity=0.481 Sum_probs=23.6
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHhcC
Q 016911 241 PWKGILLFGPPGTGKTMLAKAVATECK 267 (380)
Q Consensus 241 ~~~~vLL~GppGtGKT~la~ala~~l~ 267 (380)
+++.+.|.||+|+|||||+++|++...
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 456789999999999999999998764
No 273
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=95.66 E-value=0.0065 Score=58.50 Aligned_cols=32 Identities=25% Similarity=0.458 Sum_probs=27.8
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHhcCCeE
Q 016911 239 LSPWKGILLFGPPGTGKTMLAKAVATECKTTF 270 (380)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~la~ala~~l~~~~ 270 (380)
++++..+.|+||+|+|||||++.|++.+...+
T Consensus 123 i~~Ge~vaIvGpsGsGKSTLl~lL~gl~~G~I 154 (305)
T 2v9p_A 123 IPKKNCLAFIGPPNTGKSMLCNSLIHFLGGSV 154 (305)
T ss_dssp CTTCSEEEEECSSSSSHHHHHHHHHHHHTCEE
T ss_pred ecCCCEEEEECCCCCcHHHHHHHHhhhcCceE
Confidence 57788999999999999999999999874444
No 274
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=95.66 E-value=0.007 Score=55.49 Aligned_cols=31 Identities=13% Similarity=0.000 Sum_probs=25.6
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHhcCCe
Q 016911 239 LSPWKGILLFGPPGTGKTMLAKAVATECKTT 269 (380)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~la~ala~~l~~~ 269 (380)
+.++.-+-|.||+|+||||+++.++..++..
T Consensus 22 i~~g~iigI~G~~GsGKSTl~k~L~~~lG~~ 52 (245)
T 2jeo_A 22 SMRPFLIGVSGGTASGKSTVCEKIMELLGQN 52 (245)
T ss_dssp -CCSEEEEEECSTTSSHHHHHHHHHHHHTGG
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhchh
Confidence 3455678899999999999999999987643
No 275
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=95.65 E-value=0.028 Score=53.44 Aligned_cols=72 Identities=24% Similarity=0.210 Sum_probs=45.3
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHhc---CCeEEEEecchhh-------hhh--------c----c-chHHHHHHHHHHH
Q 016911 241 PWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVV-------SKW--------R----G-DSEKLIKVLFELA 297 (380)
Q Consensus 241 ~~~~vLL~GppGtGKT~la~ala~~l---~~~~v~v~~s~l~-------~~~--------~----g-e~e~~l~~lf~~A 297 (380)
++..+.+.|++|+||||++..+|..+ +..+..+++.... ..+ . + ......+.....+
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~~~~~ql~~~~~~~~l~~~~~~~~~~p~~l~~~~l~~~ 176 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKA 176 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccHhHHHHHHHhcccCCeEEEEcCCCCCHHHHHHHHHHHH
Confidence 56778888999999999999999876 4455555542100 000 0 0 1223334555565
Q ss_pred HhcCCeEEEEcCcch
Q 016911 298 RHHAPSTIFLDEIDA 312 (380)
Q Consensus 298 ~~~~p~ILfIDEiD~ 312 (380)
....+++|+||+-..
T Consensus 177 ~~~~~D~viiDtpp~ 191 (295)
T 1ls1_A 177 RLEARDLILVDTAGR 191 (295)
T ss_dssp HHHTCCEEEEECCCC
T ss_pred HhCCCCEEEEeCCCC
Confidence 545678999999743
No 276
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=95.63 E-value=0.051 Score=51.77 Aligned_cols=72 Identities=22% Similarity=0.072 Sum_probs=45.6
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhc---CCeEEEEecchhhh-------hh------------c-cchHHHHHHHHHHHH
Q 016911 242 WKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVS-------KW------------R-GDSEKLIKVLFELAR 298 (380)
Q Consensus 242 ~~~vLL~GppGtGKT~la~ala~~l---~~~~v~v~~s~l~~-------~~------------~-ge~e~~l~~lf~~A~ 298 (380)
+..+++.|++|+||||++..+|..+ +..+..+++..... .+ . ......+......++
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~~~ 177 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEKFL 177 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHHHH
Confidence 5678889999999999999999776 55566555531100 00 0 112333345555665
Q ss_pred hcCCeEEEEcCcchh
Q 016911 299 HHAPSTIFLDEIDAI 313 (380)
Q Consensus 299 ~~~p~ILfIDEiD~l 313 (380)
....++++||-...+
T Consensus 178 ~~~~D~ViIDTpg~~ 192 (297)
T 1j8m_F 178 SEKMEIIIVDTAGRH 192 (297)
T ss_dssp HTTCSEEEEECCCSC
T ss_pred hCCCCEEEEeCCCCc
Confidence 455689999976543
No 277
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=95.63 E-value=0.007 Score=60.57 Aligned_cols=34 Identities=26% Similarity=0.375 Sum_probs=28.6
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhcCCeEEEEec
Q 016911 242 WKGILLFGPPGTGKTMLAKAVATECKTTFFNISA 275 (380)
Q Consensus 242 ~~~vLL~GppGtGKT~la~ala~~l~~~~v~v~~ 275 (380)
...++|.||+|+|||+|+..+|..++..++..+.
T Consensus 2 ~~~i~i~GptgsGKttla~~La~~~~~~iis~Ds 35 (409)
T 3eph_A 2 KKVIVIAGTTGVGKSQLSIQLAQKFNGEVINSDS 35 (409)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHHHHTEEEEECCT
T ss_pred CcEEEEECcchhhHHHHHHHHHHHCCCeEeecCc
Confidence 3568899999999999999999999877765543
No 278
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=95.57 E-value=0.0081 Score=54.97 Aligned_cols=33 Identities=24% Similarity=0.214 Sum_probs=27.1
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHhcC--CeEEE
Q 016911 240 SPWKGILLFGPPGTGKTMLAKAVATECK--TTFFN 272 (380)
Q Consensus 240 ~~~~~vLL~GppGtGKT~la~ala~~l~--~~~v~ 272 (380)
..+..+.|.|+||+||||+++.+++.++ ..++.
T Consensus 24 ~~g~~i~i~G~~GsGKsT~~~~l~~~l~~~~~~~~ 58 (229)
T 4eaq_A 24 AMSAFITFEGPEGSGKTTVINEVYHRLVKDYDVIM 58 (229)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHHTTTSCEEE
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHhcCCCcee
Confidence 3556788999999999999999999886 45543
No 279
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=95.55 E-value=0.033 Score=58.54 Aligned_cols=34 Identities=26% Similarity=0.438 Sum_probs=23.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhc---CCeEEEEecch
Q 016911 244 GILLFGPPGTGKTMLAKAVATEC---KTTFFNISASS 277 (380)
Q Consensus 244 ~vLL~GppGtGKT~la~ala~~l---~~~~v~v~~s~ 277 (380)
-.|++||||||||+++-.+...+ +..+..+..+.
T Consensus 207 ~~lI~GPPGTGKT~ti~~~I~~l~~~~~~ILv~a~TN 243 (646)
T 4b3f_X 207 LAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCAPSN 243 (646)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESSH
T ss_pred ceEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEcCch
Confidence 57999999999998665554433 55665555544
No 280
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=95.54 E-value=0.015 Score=57.25 Aligned_cols=28 Identities=25% Similarity=0.255 Sum_probs=25.1
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHhc
Q 016911 239 LSPWKGILLFGPPGTGKTMLAKAVATEC 266 (380)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~la~ala~~l 266 (380)
..++..+.|.||+|+||||+++.+|..+
T Consensus 154 ~~~g~vi~lvG~nGsGKTTll~~Lag~l 181 (359)
T 2og2_A 154 FRKPAVIMIVGVNGGGKTTSLGKLAHRL 181 (359)
T ss_dssp SSSSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cCCCeEEEEEcCCCChHHHHHHHHHhhc
Confidence 4567789999999999999999999876
No 281
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=95.52 E-value=0.0042 Score=56.30 Aligned_cols=28 Identities=29% Similarity=0.291 Sum_probs=18.3
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHH-Hhc
Q 016911 239 LSPWKGILLFGPPGTGKTMLAKAVA-TEC 266 (380)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~la~ala-~~l 266 (380)
+.++..+.|.||+|+||||+++.++ ..+
T Consensus 24 v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 24 KSVGVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp EECCCEEEEECSCC----CHHHHHHC---
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 3556778999999999999999999 654
No 282
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=95.46 E-value=0.008 Score=56.49 Aligned_cols=29 Identities=17% Similarity=0.159 Sum_probs=25.5
Q ss_pred cCCCCceEEEEcCCCCcHHHHHHHHHHhc
Q 016911 238 LLSPWKGILLFGPPGTGKTMLAKAVATEC 266 (380)
Q Consensus 238 ~~~~~~~vLL~GppGtGKT~la~ala~~l 266 (380)
.+.++..++|.||||+||||+++.++..+
T Consensus 31 ~l~~G~~~~i~G~~G~GKTTl~~~ia~~~ 59 (296)
T 1cr0_A 31 GARGGEVIMVTSGSGMGKSTFVRQQALQW 59 (296)
T ss_dssp SBCTTCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence 35677889999999999999999998865
No 283
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=95.42 E-value=0.01 Score=62.54 Aligned_cols=37 Identities=19% Similarity=0.261 Sum_probs=31.9
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHhc---CCeEEEEecch
Q 016911 241 PWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASS 277 (380)
Q Consensus 241 ~~~~vLL~GppGtGKT~la~ala~~l---~~~~v~v~~s~ 277 (380)
.+..++|.|.||+||||++++++..+ +.+++.++...
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lDgD~ 90 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDN 90 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEESHHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEechHH
Confidence 34678999999999999999999999 88998887543
No 284
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=95.40 E-value=0.0046 Score=54.73 Aligned_cols=24 Identities=25% Similarity=0.365 Sum_probs=21.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcC
Q 016911 244 GILLFGPPGTGKTMLAKAVATECK 267 (380)
Q Consensus 244 ~vLL~GppGtGKT~la~ala~~l~ 267 (380)
-+.|.|++|+||||+++.++..++
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 478999999999999999999884
No 285
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=95.35 E-value=0.072 Score=57.41 Aligned_cols=25 Identities=20% Similarity=0.224 Sum_probs=19.9
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHh
Q 016911 241 PWKGILLFGPPGTGKTMLAKAVATE 265 (380)
Q Consensus 241 ~~~~vLL~GppGtGKT~la~ala~~ 265 (380)
....+++.||+|+|||+++..++..
T Consensus 108 ~~~~vii~gpTGSGKTtllp~ll~~ 132 (773)
T 2xau_A 108 NNQIMVFVGETGSGKTTQIPQFVLF 132 (773)
T ss_dssp HCSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 3467999999999999977766443
No 286
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=95.34 E-value=0.0074 Score=55.57 Aligned_cols=28 Identities=18% Similarity=0.381 Sum_probs=25.6
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHhc
Q 016911 239 LSPWKGILLFGPPGTGKTMLAKAVATEC 266 (380)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~la~ala~~l 266 (380)
+.++..+.|.||+|+|||||++.++...
T Consensus 28 i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 28 IKEGEFVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 6778889999999999999999999866
No 287
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=95.30 E-value=0.0077 Score=55.53 Aligned_cols=28 Identities=25% Similarity=0.329 Sum_probs=25.7
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHhc
Q 016911 239 LSPWKGILLFGPPGTGKTMLAKAVATEC 266 (380)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~la~ala~~l 266 (380)
+.++..+.|.||+|+|||||++.+++.+
T Consensus 28 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 28 IPEGALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 6778889999999999999999999876
No 288
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=95.29 E-value=0.033 Score=55.99 Aligned_cols=36 Identities=33% Similarity=0.252 Sum_probs=28.4
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHhc---CCeEEEEecc
Q 016911 241 PWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISAS 276 (380)
Q Consensus 241 ~~~~vLL~GppGtGKT~la~ala~~l---~~~~v~v~~s 276 (380)
++..+++.|+||+||||++..+|..+ +..+..+++.
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D 136 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAAD 136 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecc
Confidence 34689999999999999999999876 3455556553
No 289
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=95.27 E-value=0.074 Score=46.45 Aligned_cols=19 Identities=32% Similarity=0.226 Sum_probs=16.1
Q ss_pred CceEEEEcCCCCcHHHHHH
Q 016911 242 WKGILLFGPPGTGKTMLAK 260 (380)
Q Consensus 242 ~~~vLL~GppGtGKT~la~ 260 (380)
++++++.+|+|+|||..+.
T Consensus 40 ~~~~lv~apTGsGKT~~~~ 58 (206)
T 1vec_A 40 GRDILARAKNGTGKSGAYL 58 (206)
T ss_dssp TCCEEEECCSSSTTHHHHH
T ss_pred CCCEEEECCCCCchHHHHH
Confidence 3689999999999997554
No 290
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=95.24 E-value=0.049 Score=60.78 Aligned_cols=43 Identities=28% Similarity=0.294 Sum_probs=34.4
Q ss_pred cchHHHHHHHHHHHhccccCcccccccCCCCceEEEEcCCCCcHHHHHHHHHHh
Q 016911 212 KGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATE 265 (380)
Q Consensus 212 ~Gl~~~k~~L~~~l~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~la~ala~~ 265 (380)
+|.+..++.|.+.+... ...+.+.|+|+.|+|||+||+.+++.
T Consensus 131 VGRe~eLeeL~elL~~~-----------d~~RVV~IvGmGGIGKTTLAk~Vy~d 173 (1221)
T 1vt4_I 131 VSRLQPYLKLRQALLEL-----------RPAKNVLIDGVLGSGKTWVALDVCLS 173 (1221)
T ss_dssp CCCHHHHHHHHHHHHHC-----------CSSCEEEECCSTTSSHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHhcc-----------CCCeEEEEEcCCCccHHHHHHHHHHh
Confidence 89999888888776421 12467899999999999999999853
No 291
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=95.22 E-value=0.13 Score=46.20 Aligned_cols=18 Identities=28% Similarity=0.355 Sum_probs=15.8
Q ss_pred CceEEEEcCCCCcHHHHH
Q 016911 242 WKGILLFGPPGTGKTMLA 259 (380)
Q Consensus 242 ~~~vLL~GppGtGKT~la 259 (380)
++.+++.+|+|+|||..+
T Consensus 61 ~~~~l~~a~TGsGKT~~~ 78 (230)
T 2oxc_A 61 GLDLIVQAKSGTGKTCVF 78 (230)
T ss_dssp TCCEEEECCTTSSHHHHH
T ss_pred CCCEEEECCCCCcHHHHH
Confidence 478999999999999863
No 292
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=95.20 E-value=0.012 Score=56.68 Aligned_cols=28 Identities=18% Similarity=0.013 Sum_probs=24.7
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHhc
Q 016911 239 LSPWKGILLFGPPGTGKTMLAKAVATEC 266 (380)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~la~ala~~l 266 (380)
..++..+.|.||+|+|||||++.|+..+
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll 114 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQALL 114 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhhc
Confidence 3566778899999999999999999976
No 293
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=95.18 E-value=0.1 Score=52.45 Aligned_cols=35 Identities=26% Similarity=0.217 Sum_probs=28.1
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHhc---CCeEEEEec
Q 016911 241 PWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISA 275 (380)
Q Consensus 241 ~~~~vLL~GppGtGKT~la~ala~~l---~~~~v~v~~ 275 (380)
++..+++.|++|+||||++..+|..+ +..+..+++
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~ 134 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAA 134 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeec
Confidence 56778899999999999999999876 455555554
No 294
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=95.15 E-value=0.044 Score=53.07 Aligned_cols=27 Identities=22% Similarity=0.274 Sum_probs=23.7
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHhc
Q 016911 240 SPWKGILLFGPPGTGKTMLAKAVATEC 266 (380)
Q Consensus 240 ~~~~~vLL~GppGtGKT~la~ala~~l 266 (380)
.++..+.|.||||+|||||+++++..+
T Consensus 53 ~~g~~v~i~G~~GaGKSTLl~~l~g~~ 79 (337)
T 2qm8_A 53 GRAIRVGITGVPGVGKSTTIDALGSLL 79 (337)
T ss_dssp CCSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhh
Confidence 456788999999999999999999765
No 295
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=95.14 E-value=0.049 Score=54.79 Aligned_cols=73 Identities=16% Similarity=0.215 Sum_probs=46.6
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHhc----CCeEEEEecchhhhh----------------hc----cchHHHHHHHHH
Q 016911 240 SPWKGILLFGPPGTGKTMLAKAVATEC----KTTFFNISASSVVSK----------------WR----GDSEKLIKVLFE 295 (380)
Q Consensus 240 ~~~~~vLL~GppGtGKT~la~ala~~l----~~~~v~v~~s~l~~~----------------~~----ge~e~~l~~lf~ 295 (380)
.+++.+++.|++|+||||++-.+|..+ +..+..+++...... +. ......+...+.
T Consensus 98 ~~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l~ 177 (433)
T 2xxa_A 98 QPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALK 177 (433)
T ss_dssp SSSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHHHH
Confidence 356788899999999999999988665 566666666521110 00 012333355555
Q ss_pred HHHhcCCeEEEEcCcch
Q 016911 296 LARHHAPSTIFLDEIDA 312 (380)
Q Consensus 296 ~A~~~~p~ILfIDEiD~ 312 (380)
.+.....++++||-...
T Consensus 178 ~~~~~~~D~VIIDTpG~ 194 (433)
T 2xxa_A 178 EAKLKFYDVLLVDTAGR 194 (433)
T ss_dssp HHHHTTCSEEEEECCCC
T ss_pred HHHhCCCCEEEEECCCc
Confidence 55544568999997643
No 296
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=95.13 E-value=0.054 Score=54.68 Aligned_cols=27 Identities=26% Similarity=0.324 Sum_probs=23.7
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHhcC
Q 016911 241 PWKGILLFGPPGTGKTMLAKAVATECK 267 (380)
Q Consensus 241 ~~~~vLL~GppGtGKT~la~ala~~l~ 267 (380)
.+..+++.|.||+||||+++.++..++
T Consensus 38 ~~~~IvlvGlpGsGKSTia~~La~~l~ 64 (469)
T 1bif_A 38 CPTLIVMVGLPARGKTYISKKLTRYLN 64 (469)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 345789999999999999999998874
No 297
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=95.12 E-value=0.0073 Score=55.14 Aligned_cols=28 Identities=18% Similarity=0.229 Sum_probs=25.2
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHhc
Q 016911 239 LSPWKGILLFGPPGTGKTMLAKAVATEC 266 (380)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~la~ala~~l 266 (380)
+.++..+.|.||+|+|||||++.++..+
T Consensus 27 i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 27 VKKGEFVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp EETTCEEEEEECTTSCHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 5677789999999999999999999876
No 298
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=95.12 E-value=0.0095 Score=56.60 Aligned_cols=36 Identities=14% Similarity=0.237 Sum_probs=24.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhcC---CeEEEEecchh
Q 016911 243 KGILLFGPPGTGKTMLAKAVATECK---TTFFNISASSV 278 (380)
Q Consensus 243 ~~vLL~GppGtGKT~la~ala~~l~---~~~v~v~~s~l 278 (380)
.-+.|.||+|+||||+++.++..++ ..+..++..++
T Consensus 6 ~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~ 44 (290)
T 1a7j_A 6 PIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAF 44 (290)
T ss_dssp CEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGG
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchh
Confidence 4588999999999999999999875 33444554443
No 299
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=95.11 E-value=0.0093 Score=55.09 Aligned_cols=28 Identities=25% Similarity=0.341 Sum_probs=25.5
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHhc
Q 016911 239 LSPWKGILLFGPPGTGKTMLAKAVATEC 266 (380)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~la~ala~~l 266 (380)
+.++..+.|.||+|+|||||++.++..+
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 25 AQPNSIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp ECTTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 6778889999999999999999999865
No 300
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=95.07 E-value=0.012 Score=52.40 Aligned_cols=24 Identities=38% Similarity=0.686 Sum_probs=21.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhc
Q 016911 243 KGILLFGPPGTGKTMLAKAVATEC 266 (380)
Q Consensus 243 ~~vLL~GppGtGKT~la~ala~~l 266 (380)
..+.|.||+|+||||+++.++..+
T Consensus 2 ~~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 2 RHVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCChHHHHHHHHHhhc
Confidence 357899999999999999999876
No 301
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=95.05 E-value=0.0099 Score=55.64 Aligned_cols=28 Identities=18% Similarity=0.273 Sum_probs=25.5
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHhc
Q 016911 239 LSPWKGILLFGPPGTGKTMLAKAVATEC 266 (380)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~la~ala~~l 266 (380)
+.++..+.|.||+|+|||||++.++..+
T Consensus 29 i~~Ge~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 29 ARAGDVISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 5777889999999999999999999876
No 302
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=95.05 E-value=0.15 Score=45.63 Aligned_cols=20 Identities=30% Similarity=0.286 Sum_probs=16.5
Q ss_pred CCceEEEEcCCCCcHHHHHH
Q 016911 241 PWKGILLFGPPGTGKTMLAK 260 (380)
Q Consensus 241 ~~~~vLL~GppGtGKT~la~ 260 (380)
.++.+++.+|+|+|||..+-
T Consensus 61 ~~~~~li~a~TGsGKT~~~~ 80 (236)
T 2pl3_A 61 QGKDVLGAAKTGSGKTLAFL 80 (236)
T ss_dssp TTCCEEEECCTTSCHHHHHH
T ss_pred CCCCEEEEeCCCCcHHHHHH
Confidence 34789999999999998643
No 303
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=95.03 E-value=0.014 Score=53.40 Aligned_cols=30 Identities=23% Similarity=0.334 Sum_probs=27.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhcCCeEEE
Q 016911 243 KGILLFGPPGTGKTMLAKAVATECKTTFFN 272 (380)
Q Consensus 243 ~~vLL~GppGtGKT~la~ala~~l~~~~v~ 272 (380)
..+.|.|++|||||++++.+|..++.+++.
T Consensus 15 ~iI~i~g~~gsGk~~i~~~la~~lg~~~~d 44 (223)
T 3hdt_A 15 LIITIEREYGSGGRIVGKKLAEELGIHFYD 44 (223)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHTCEEEC
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHcCCcEEc
Confidence 467899999999999999999999998854
No 304
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=95.02 E-value=0.079 Score=57.10 Aligned_cols=25 Identities=24% Similarity=0.361 Sum_probs=22.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhc
Q 016911 242 WKGILLFGPPGTGKTMLAKAVATEC 266 (380)
Q Consensus 242 ~~~vLL~GppGtGKT~la~ala~~l 266 (380)
+..++|+||.|+||||+++.++...
T Consensus 576 g~i~~I~GpNGsGKSTlLr~iagl~ 600 (765)
T 1ewq_A 576 HELVLITGPNMAGKSTFLRQTALIA 600 (765)
T ss_dssp SCEEEEESCSSSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHHhhh
Confidence 5679999999999999999998643
No 305
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=94.99 E-value=0.015 Score=55.54 Aligned_cols=28 Identities=18% Similarity=0.077 Sum_probs=24.1
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHhcC
Q 016911 240 SPWKGILLFGPPGTGKTMLAKAVATECK 267 (380)
Q Consensus 240 ~~~~~vLL~GppGtGKT~la~ala~~l~ 267 (380)
.++..+.|.||+|+||||+++.++..++
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3456788999999999999999999765
No 306
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=94.97 E-value=0.017 Score=53.39 Aligned_cols=31 Identities=23% Similarity=0.414 Sum_probs=26.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhcCCeEEEE
Q 016911 243 KGILLFGPPGTGKTMLAKAVATECKTTFFNI 273 (380)
Q Consensus 243 ~~vLL~GppGtGKT~la~ala~~l~~~~v~v 273 (380)
..+-|.|+||+||||+++.++..++.+.+..
T Consensus 9 ~~~~~~G~pGsGKsT~a~~L~~~~g~~~is~ 39 (230)
T 3gmt_A 9 MRLILLGAPGAGKGTQANFIKEKFGIPQIST 39 (230)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHTCCEECH
T ss_pred cceeeECCCCCCHHHHHHHHHHHhCCCeeec
Confidence 4577999999999999999999998777543
No 307
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=94.96 E-value=0.037 Score=51.39 Aligned_cols=24 Identities=33% Similarity=0.466 Sum_probs=21.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhc
Q 016911 243 KGILLFGPPGTGKTMLAKAVATEC 266 (380)
Q Consensus 243 ~~vLL~GppGtGKT~la~ala~~l 266 (380)
..+.|.|+||+|||||..++.+..
T Consensus 4 ~~i~lvG~~g~GKTTL~n~l~g~~ 27 (271)
T 3k53_A 4 KTVALVGNPNVGKTTIFNALTGLR 27 (271)
T ss_dssp EEEEEEECSSSSHHHHHHHHHTTC
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC
Confidence 578999999999999999998653
No 308
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=94.93 E-value=0.087 Score=58.55 Aligned_cols=22 Identities=27% Similarity=0.377 Sum_probs=20.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHH
Q 016911 242 WKGILLFGPPGTGKTMLAKAVA 263 (380)
Q Consensus 242 ~~~vLL~GppGtGKT~la~ala 263 (380)
+..++|+||.|+||||+++.++
T Consensus 789 g~i~~ItGpNgsGKSTlLr~iG 810 (1022)
T 2o8b_B 789 AYCVLVTGPNMGGKSTLMRQAG 810 (1022)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHH
Confidence 5789999999999999999983
No 309
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=94.93 E-value=0.011 Score=55.18 Aligned_cols=28 Identities=25% Similarity=0.323 Sum_probs=25.6
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHhc
Q 016911 239 LSPWKGILLFGPPGTGKTMLAKAVATEC 266 (380)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~la~ala~~l 266 (380)
+.++..+.|.||+|+|||||++.++..+
T Consensus 43 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 43 IPSGTTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 5778889999999999999999999875
No 310
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=94.93 E-value=0.011 Score=55.57 Aligned_cols=28 Identities=36% Similarity=0.494 Sum_probs=25.6
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHhc
Q 016911 239 LSPWKGILLFGPPGTGKTMLAKAVATEC 266 (380)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~la~ala~~l 266 (380)
+.++..+.|.||+|+|||||++.++..+
T Consensus 42 i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 42 LYPGKVTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 6777889999999999999999999876
No 311
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=94.93 E-value=0.0097 Score=54.51 Aligned_cols=28 Identities=25% Similarity=0.306 Sum_probs=25.5
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHhc
Q 016911 239 LSPWKGILLFGPPGTGKTMLAKAVATEC 266 (380)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~la~ala~~l 266 (380)
+.++..+.|.||.|+|||||++.++..+
T Consensus 31 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 31 IERGQLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 5677889999999999999999999876
No 312
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=94.90 E-value=0.083 Score=47.72 Aligned_cols=18 Identities=28% Similarity=0.259 Sum_probs=15.7
Q ss_pred CceEEEEcCCCCcHHHHH
Q 016911 242 WKGILLFGPPGTGKTMLA 259 (380)
Q Consensus 242 ~~~vLL~GppGtGKT~la 259 (380)
++.+++.+|+|+|||..+
T Consensus 67 ~~~~li~apTGsGKT~~~ 84 (237)
T 3bor_A 67 GYDVIAQAQSGTGKTATF 84 (237)
T ss_dssp TCCEEECCCSSHHHHHHH
T ss_pred CCCEEEECCCCCcHHHHH
Confidence 467999999999999864
No 313
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=94.89 E-value=0.028 Score=53.40 Aligned_cols=28 Identities=21% Similarity=0.255 Sum_probs=24.1
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHhcC
Q 016911 240 SPWKGILLFGPPGTGKTMLAKAVATECK 267 (380)
Q Consensus 240 ~~~~~vLL~GppGtGKT~la~ala~~l~ 267 (380)
.++..+.|.|++|+||||+++.++..++
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~ 56 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLM 56 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhh
Confidence 3456788999999999999999999885
No 314
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=94.89 E-value=0.017 Score=60.29 Aligned_cols=38 Identities=21% Similarity=0.217 Sum_probs=31.4
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHhcC----CeEEEEecchh
Q 016911 241 PWKGILLFGPPGTGKTMLAKAVATECK----TTFFNISASSV 278 (380)
Q Consensus 241 ~~~~vLL~GppGtGKT~la~ala~~l~----~~~v~v~~s~l 278 (380)
.+..++|.|+||+||||+|++++..++ .+++.++...+
T Consensus 395 ~~~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~D~i 436 (573)
T 1m8p_A 395 QGFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGDTV 436 (573)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEHHHH
T ss_pred cceEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEECcHHH
Confidence 346788999999999999999999986 67777775543
No 315
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=94.88 E-value=0.01 Score=55.36 Aligned_cols=28 Identities=25% Similarity=0.428 Sum_probs=25.2
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHhc
Q 016911 239 LSPWKGILLFGPPGTGKTMLAKAVATEC 266 (380)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~la~ala~~l 266 (380)
+.++..+.|.||+|+|||||++.+++.+
T Consensus 30 i~~Ge~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 30 VNKGDVTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred EeCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 5677889999999999999999999876
No 316
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=94.88 E-value=0.018 Score=51.20 Aligned_cols=32 Identities=28% Similarity=0.399 Sum_probs=27.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHhcCCeEEEEecch
Q 016911 245 ILLFGPPGTGKTMLAKAVATECKTTFFNISASS 277 (380)
Q Consensus 245 vLL~GppGtGKT~la~ala~~l~~~~v~v~~s~ 277 (380)
++++|++|+|||++|..++.. +.+.+++....
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~-~~~~~yiaT~~ 33 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD-APQVLYIATSQ 33 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS-CSSEEEEECCC
T ss_pred EEEECCCCCcHHHHHHHHHhc-CCCeEEEecCC
Confidence 789999999999999999988 77777777644
No 317
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=94.86 E-value=0.012 Score=55.25 Aligned_cols=28 Identities=18% Similarity=0.424 Sum_probs=25.5
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHhc
Q 016911 239 LSPWKGILLFGPPGTGKTMLAKAVATEC 266 (380)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~la~ala~~l 266 (380)
+.++..+.|.||+|+|||||++.++..+
T Consensus 47 i~~Gei~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 47 IREGEVVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEEcCCCCcHHHHHHHHHcCC
Confidence 5777889999999999999999999876
No 318
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=94.86 E-value=0.0098 Score=54.15 Aligned_cols=28 Identities=32% Similarity=0.453 Sum_probs=25.2
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHhc
Q 016911 239 LSPWKGILLFGPPGTGKTMLAKAVATEC 266 (380)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~la~ala~~l 266 (380)
+.++..+.|.||+|+|||||++.++..+
T Consensus 32 i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 32 IEKGNVVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp EETTCCEEEECCTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 5677789999999999999999999876
No 319
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=94.85 E-value=0.01 Score=55.03 Aligned_cols=28 Identities=25% Similarity=0.345 Sum_probs=25.4
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHhc
Q 016911 239 LSPWKGILLFGPPGTGKTMLAKAVATEC 266 (380)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~la~ala~~l 266 (380)
+.++..+.|.||+|+|||||++.++..+
T Consensus 32 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 32 IKQGEVIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 5677889999999999999999999876
No 320
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=94.84 E-value=0.015 Score=54.61 Aligned_cols=27 Identities=30% Similarity=0.556 Sum_probs=25.0
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHh
Q 016911 239 LSPWKGILLFGPPGTGKTMLAKAVATE 265 (380)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~la~ala~~ 265 (380)
+.++..+.|.||+|+|||||++.++..
T Consensus 43 i~~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 43 VHPGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 577788999999999999999999996
No 321
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=94.83 E-value=0.011 Score=54.71 Aligned_cols=28 Identities=21% Similarity=0.358 Sum_probs=24.1
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHhcC
Q 016911 240 SPWKGILLFGPPGTGKTMLAKAVATECK 267 (380)
Q Consensus 240 ~~~~~vLL~GppGtGKT~la~ala~~l~ 267 (380)
..+..++|.|++|+||||+++.|+..++
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~~l~ 49 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQLCE 49 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 3456789999999999999999999984
No 322
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=94.83 E-value=0.011 Score=54.61 Aligned_cols=28 Identities=29% Similarity=0.330 Sum_probs=25.2
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHhc
Q 016911 239 LSPWKGILLFGPPGTGKTMLAKAVATEC 266 (380)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~la~ala~~l 266 (380)
+.++..+.|.||+|+|||||++.++..+
T Consensus 29 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 29 VPRGQIVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 5677789999999999999999999866
No 323
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=94.81 E-value=0.014 Score=53.88 Aligned_cols=27 Identities=26% Similarity=0.524 Sum_probs=24.4
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHhc
Q 016911 239 LSPWKGILLFGPPGTGKTMLAKAVATEC 266 (380)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~la~ala~~l 266 (380)
+.+ ..+.|.||+|+|||||++.+++.+
T Consensus 22 i~~-e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 22 MGR-DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp ECS-SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred ECC-EEEEEECCCCCCHHHHHHHHhCCC
Confidence 566 788999999999999999999876
No 324
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=94.80 E-value=0.013 Score=54.82 Aligned_cols=28 Identities=29% Similarity=0.373 Sum_probs=25.5
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHhc
Q 016911 239 LSPWKGILLFGPPGTGKTMLAKAVATEC 266 (380)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~la~ala~~l 266 (380)
+.++..+.|.||.|+|||||++.++..+
T Consensus 38 i~~Gei~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 38 IEEGEIFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 5777889999999999999999999876
No 325
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=94.80 E-value=0.014 Score=57.53 Aligned_cols=28 Identities=32% Similarity=0.485 Sum_probs=25.5
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHhc
Q 016911 239 LSPWKGILLFGPPGTGKTMLAKAVATEC 266 (380)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~la~ala~~l 266 (380)
+.++..+.|.||+|||||||+++++...
T Consensus 27 i~~Ge~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 27 LDPGEILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp ECTTCEEEEEESTTSSHHHHHHHHHTSS
T ss_pred EcCCCEEEEECCCCchHHHHHHHHhcCC
Confidence 5777889999999999999999999866
No 326
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=94.79 E-value=0.013 Score=54.30 Aligned_cols=27 Identities=33% Similarity=0.514 Sum_probs=24.7
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHh
Q 016911 239 LSPWKGILLFGPPGTGKTMLAKAVATE 265 (380)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~la~ala~~ 265 (380)
+.++..+.|.||+|+|||||++.++..
T Consensus 26 i~~Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 26 VPKGEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 567788999999999999999999996
No 327
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=94.78 E-value=0.017 Score=55.28 Aligned_cols=26 Identities=23% Similarity=0.284 Sum_probs=23.4
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHhc
Q 016911 241 PWKGILLFGPPGTGKTMLAKAVATEC 266 (380)
Q Consensus 241 ~~~~vLL~GppGtGKT~la~ala~~l 266 (380)
++..+.|.||+|+||||+++.+|..+
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll 126 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYY 126 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 45678999999999999999999876
No 328
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=94.75 E-value=0.013 Score=54.82 Aligned_cols=28 Identities=29% Similarity=0.401 Sum_probs=25.5
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHhc
Q 016911 239 LSPWKGILLFGPPGTGKTMLAKAVATEC 266 (380)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~la~ala~~l 266 (380)
+.++..+.|.||+|+|||||++.++..+
T Consensus 30 i~~Ge~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 30 INEGECLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 6777889999999999999999999866
No 329
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=94.75 E-value=0.011 Score=55.86 Aligned_cols=28 Identities=18% Similarity=0.212 Sum_probs=25.3
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHhc
Q 016911 239 LSPWKGILLFGPPGTGKTMLAKAVATEC 266 (380)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~la~ala~~l 266 (380)
+.++..+.|.||+|+|||||++.++..+
T Consensus 31 i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 31 IKRGEVTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 5677889999999999999999999866
No 330
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=94.74 E-value=0.011 Score=54.92 Aligned_cols=28 Identities=29% Similarity=0.394 Sum_probs=25.2
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHhc
Q 016911 239 LSPWKGILLFGPPGTGKTMLAKAVATEC 266 (380)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~la~ala~~l 266 (380)
+.++..+.|.||+|+|||||++.+++.+
T Consensus 23 i~~Ge~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 23 VRAGEILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 5677789999999999999999999876
No 331
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=94.73 E-value=0.044 Score=62.50 Aligned_cols=28 Identities=18% Similarity=0.331 Sum_probs=25.6
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHhc
Q 016911 239 LSPWKGILLFGPPGTGKTMLAKAVATEC 266 (380)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~la~ala~~l 266 (380)
++++..+.+.||+|+|||||++++.+.+
T Consensus 441 i~~G~~vaivG~sGsGKSTll~ll~~~~ 468 (1321)
T 4f4c_A 441 VNAGQTVALVGSSGCGKSTIISLLLRYY 468 (1321)
T ss_dssp ECTTCEEEEEECSSSCHHHHHHHHTTSS
T ss_pred ecCCcEEEEEecCCCcHHHHHHHhcccc
Confidence 5777889999999999999999999877
No 332
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=94.72 E-value=0.02 Score=55.72 Aligned_cols=31 Identities=29% Similarity=0.464 Sum_probs=26.4
Q ss_pred CCC--CceEEEEcCCCCcHHHHHHHHHHhcCCe
Q 016911 239 LSP--WKGILLFGPPGTGKTMLAKAVATECKTT 269 (380)
Q Consensus 239 ~~~--~~~vLL~GppGtGKT~la~ala~~l~~~ 269 (380)
+.+ ...+.|.||+|+|||||++.|++.++..
T Consensus 165 v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~ 197 (365)
T 1lw7_A 165 ARPFFAKTVAILGGESSGKSVLVNKLAAVFNTT 197 (365)
T ss_dssp TGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCE
T ss_pred HHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 445 6789999999999999999999987543
No 333
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=94.70 E-value=0.062 Score=52.19 Aligned_cols=26 Identities=23% Similarity=0.339 Sum_probs=22.6
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHhc
Q 016911 241 PWKGILLFGPPGTGKTMLAKAVATEC 266 (380)
Q Consensus 241 ~~~~vLL~GppGtGKT~la~ala~~l 266 (380)
....+.|.|+||+||||++..++..+
T Consensus 78 ~~~~I~i~G~~G~GKSTl~~~L~~~l 103 (355)
T 3p32_A 78 NAHRVGITGVPGVGKSTAIEALGMHL 103 (355)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHH
Confidence 34678999999999999999998765
No 334
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=94.66 E-value=0.012 Score=55.39 Aligned_cols=28 Identities=21% Similarity=0.433 Sum_probs=25.3
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHhc
Q 016911 239 LSPWKGILLFGPPGTGKTMLAKAVATEC 266 (380)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~la~ala~~l 266 (380)
+.++..+.|.||+|+|||||++++++.+
T Consensus 34 i~~Ge~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 34 IASGEMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp EETTCEEEEECCTTSCHHHHHHHHTSSS
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 5677889999999999999999999866
No 335
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=94.64 E-value=0.039 Score=47.48 Aligned_cols=27 Identities=33% Similarity=0.491 Sum_probs=23.1
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHhc
Q 016911 240 SPWKGILLFGPPGTGKTMLAKAVATEC 266 (380)
Q Consensus 240 ~~~~~vLL~GppGtGKT~la~ala~~l 266 (380)
.....+++.|++|+|||+|+.++....
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 344689999999999999999998754
No 336
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=94.63 E-value=0.017 Score=56.80 Aligned_cols=28 Identities=29% Similarity=0.336 Sum_probs=25.4
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHhc
Q 016911 239 LSPWKGILLFGPPGTGKTMLAKAVATEC 266 (380)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~la~ala~~l 266 (380)
+.++..+.|.||+|||||||++.++...
T Consensus 26 i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 26 VKDGEFVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred EcCCCEEEEEcCCCchHHHHHHHHHCCC
Confidence 5677889999999999999999999876
No 337
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=94.63 E-value=0.019 Score=51.14 Aligned_cols=26 Identities=27% Similarity=0.376 Sum_probs=23.1
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHh
Q 016911 240 SPWKGILLFGPPGTGKTMLAKAVATE 265 (380)
Q Consensus 240 ~~~~~vLL~GppGtGKT~la~ala~~ 265 (380)
-.+.++||.|++|+||||+|.++...
T Consensus 14 v~G~gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 14 IDKMGVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp ETTEEEEEEESSSSSHHHHHHHHHHT
T ss_pred ECCEEEEEEcCCCCCHHHHHHHHHHc
Confidence 35689999999999999999999874
No 338
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=94.62 E-value=0.017 Score=56.85 Aligned_cols=28 Identities=29% Similarity=0.446 Sum_probs=25.4
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHhc
Q 016911 239 LSPWKGILLFGPPGTGKTMLAKAVATEC 266 (380)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~la~ala~~l 266 (380)
+.++..+.|.||+|||||||++.++...
T Consensus 26 i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 26 IKDGEFMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred ECCCCEEEEECCCCchHHHHHHHHhcCC
Confidence 5677889999999999999999999876
No 339
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=94.62 E-value=0.014 Score=60.73 Aligned_cols=39 Identities=23% Similarity=0.280 Sum_probs=30.8
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHhcC----CeEEEEecchh
Q 016911 240 SPWKGILLFGPPGTGKTMLAKAVATECK----TTFFNISASSV 278 (380)
Q Consensus 240 ~~~~~vLL~GppGtGKT~la~ala~~l~----~~~v~v~~s~l 278 (380)
.++..+.|.|++|+|||||+++|+..++ ..+..++...+
T Consensus 367 ~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~ 409 (552)
T 3cr8_A 367 RQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIV 409 (552)
T ss_dssp GSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHH
T ss_pred ccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHH
Confidence 4567799999999999999999999884 34555666554
No 340
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=94.60 E-value=0.027 Score=51.21 Aligned_cols=26 Identities=15% Similarity=0.207 Sum_probs=23.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhcC
Q 016911 242 WKGILLFGPPGTGKTMLAKAVATECK 267 (380)
Q Consensus 242 ~~~vLL~GppGtGKT~la~ala~~l~ 267 (380)
+..+.+.|++|+||||+++.++..++
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 35689999999999999999999984
No 341
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=94.58 E-value=0.018 Score=56.97 Aligned_cols=28 Identities=29% Similarity=0.421 Sum_probs=25.4
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHhc
Q 016911 239 LSPWKGILLFGPPGTGKTMLAKAVATEC 266 (380)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~la~ala~~l 266 (380)
+.++..+.|.||+|||||||++.+|...
T Consensus 34 i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 34 IKDGEFLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred ECCCCEEEEECCCCChHHHHHHHHHcCC
Confidence 5677889999999999999999999866
No 342
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=94.57 E-value=0.013 Score=55.44 Aligned_cols=28 Identities=25% Similarity=0.362 Sum_probs=25.3
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHhc
Q 016911 239 LSPWKGILLFGPPGTGKTMLAKAVATEC 266 (380)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~la~ala~~l 266 (380)
+.++..+.|.||+|+|||||++.++..+
T Consensus 44 i~~Ge~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 44 IAKGDKWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 5677789999999999999999999876
No 343
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=94.57 E-value=0.018 Score=57.15 Aligned_cols=28 Identities=25% Similarity=0.428 Sum_probs=25.5
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHhc
Q 016911 239 LSPWKGILLFGPPGTGKTMLAKAVATEC 266 (380)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~la~ala~~l 266 (380)
+.++..+.|.||+|||||||++.++...
T Consensus 26 i~~Ge~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 26 IHEGEFVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred ECCCCEEEEEcCCCchHHHHHHHHHcCC
Confidence 5777889999999999999999999876
No 344
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=94.55 E-value=0.013 Score=57.41 Aligned_cols=72 Identities=22% Similarity=0.266 Sum_probs=45.2
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHhcC--CeEEEEecc-hhhhh-------hcc-c-------hHHHHHHHHHHHHhcC
Q 016911 240 SPWKGILLFGPPGTGKTMLAKAVATECK--TTFFNISAS-SVVSK-------WRG-D-------SEKLIKVLFELARHHA 301 (380)
Q Consensus 240 ~~~~~vLL~GppGtGKT~la~ala~~l~--~~~v~v~~s-~l~~~-------~~g-e-------~e~~l~~lf~~A~~~~ 301 (380)
.++..++|.||+|+||||++++++..++ ...+.++.. ++... ++. + .....+..+..+....
T Consensus 173 ~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~~~e~~~~~~~~~v~~v~~q~~~~~~~~~~t~~~~i~~~l~~~ 252 (361)
T 2gza_A 173 QLERVIVVAGETGSGKTTLMKALMQEIPFDQRLITIEDVPELFLPDHPNHVHLFYPSEAKEEENAPVTAATLLRSCLRMK 252 (361)
T ss_dssp HTTCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEESSSCCCCTTCSSEEEEECC----------CCHHHHHHHHTTSC
T ss_pred hcCCEEEEECCCCCCHHHHHHHHHhcCCCCceEEEECCccccCccccCCEEEEeecCccccccccccCHHHHHHHHHhcC
Confidence 5667899999999999999999999873 233444321 11000 111 0 1112345555666667
Q ss_pred CeEEEEcCcc
Q 016911 302 PSTIFLDEID 311 (380)
Q Consensus 302 p~ILfIDEiD 311 (380)
|+.++++|+.
T Consensus 253 pd~~l~~e~r 262 (361)
T 2gza_A 253 PTRILLAELR 262 (361)
T ss_dssp CSEEEESCCC
T ss_pred CCEEEEcCch
Confidence 8999999974
No 345
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=94.54 E-value=0.12 Score=46.06 Aligned_cols=20 Identities=25% Similarity=0.326 Sum_probs=16.6
Q ss_pred CCceEEEEcCCCCcHHHHHH
Q 016911 241 PWKGILLFGPPGTGKTMLAK 260 (380)
Q Consensus 241 ~~~~vLL~GppGtGKT~la~ 260 (380)
.++.+++.+|+|+|||..+.
T Consensus 56 ~~~~~l~~apTGsGKT~~~~ 75 (228)
T 3iuy_A 56 QGIDLIVVAQTGTGKTLSYL 75 (228)
T ss_dssp TTCCEEEECCTTSCHHHHHH
T ss_pred CCCCEEEECCCCChHHHHHH
Confidence 34789999999999998643
No 346
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=94.54 E-value=0.15 Score=45.19 Aligned_cols=18 Identities=28% Similarity=0.257 Sum_probs=15.6
Q ss_pred ceEEEEcCCCCcHHHHHH
Q 016911 243 KGILLFGPPGTGKTMLAK 260 (380)
Q Consensus 243 ~~vLL~GppGtGKT~la~ 260 (380)
+.+++.+|+|+|||..+.
T Consensus 42 ~~~lv~a~TGsGKT~~~~ 59 (219)
T 1q0u_A 42 ESMVGQSQTGTGKTHAYL 59 (219)
T ss_dssp CCEEEECCSSHHHHHHHH
T ss_pred CCEEEECCCCChHHHHHH
Confidence 679999999999998643
No 347
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=94.54 E-value=0.013 Score=54.51 Aligned_cols=28 Identities=21% Similarity=0.259 Sum_probs=25.2
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHhc
Q 016911 239 LSPWKGILLFGPPGTGKTMLAKAVATEC 266 (380)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~la~ala~~l 266 (380)
+.++..+.|.||+|+|||||++.+++.+
T Consensus 28 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 28 LNKGDILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp EETTCEEEEECCSSSSHHHHHHHHTTSS
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 5677789999999999999999999876
No 348
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=94.54 E-value=0.016 Score=56.98 Aligned_cols=28 Identities=29% Similarity=0.437 Sum_probs=25.2
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHhc
Q 016911 239 LSPWKGILLFGPPGTGKTMLAKAVATEC 266 (380)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~la~ala~~l 266 (380)
+.++..+.|.||+|||||||++.++...
T Consensus 38 i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 38 IREGEMVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred ECCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 5677789999999999999999999876
No 349
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=94.51 E-value=0.014 Score=52.81 Aligned_cols=25 Identities=40% Similarity=0.525 Sum_probs=22.1
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHh
Q 016911 241 PWKGILLFGPPGTGKTMLAKAVATE 265 (380)
Q Consensus 241 ~~~~vLL~GppGtGKT~la~ala~~ 265 (380)
++..+.|.||+|+|||||++.++..
T Consensus 21 ~Ge~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 21 TNTIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp HCSEEEEECCTTSSTTHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4467889999999999999999975
No 350
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=94.51 E-value=0.48 Score=45.10 Aligned_cols=22 Identities=23% Similarity=0.197 Sum_probs=17.8
Q ss_pred CceEEEEcCCCCcHHHHHHHHH
Q 016911 242 WKGILLFGPPGTGKTMLAKAVA 263 (380)
Q Consensus 242 ~~~vLL~GppGtGKT~la~ala 263 (380)
+..+++.+|+|+|||..+-..+
T Consensus 45 ~~~~lv~a~TGsGKT~~~~~~~ 66 (391)
T 1xti_A 45 GMDVLCQAKSGMGKTAVFVLAT 66 (391)
T ss_dssp TCCEEEECSSCSSHHHHHHHHH
T ss_pred CCcEEEECCCCCcHHHHHHHHH
Confidence 4789999999999998764443
No 351
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=94.49 E-value=0.12 Score=46.74 Aligned_cols=19 Identities=21% Similarity=0.198 Sum_probs=16.2
Q ss_pred CceEEEEcCCCCcHHHHHH
Q 016911 242 WKGILLFGPPGTGKTMLAK 260 (380)
Q Consensus 242 ~~~vLL~GppGtGKT~la~ 260 (380)
++.+++.+|+|+|||..+.
T Consensus 66 g~~~l~~apTGsGKT~~~~ 84 (242)
T 3fe2_A 66 GLDMVGVAQTGSGKTLSYL 84 (242)
T ss_dssp TCCEEEEECTTSCHHHHHH
T ss_pred CCCEEEECCCcCHHHHHHH
Confidence 4689999999999998743
No 352
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=94.48 E-value=0.078 Score=52.95 Aligned_cols=27 Identities=33% Similarity=0.480 Sum_probs=23.8
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHhc
Q 016911 240 SPWKGILLFGPPGTGKTMLAKAVATEC 266 (380)
Q Consensus 240 ~~~~~vLL~GppGtGKT~la~ala~~l 266 (380)
.++..++|.||+|+|||+|++.+++..
T Consensus 172 ~rGQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 172 GRGQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp BTTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred cCCcEEEEecCCCCChhHHHHHHHHHH
Confidence 456789999999999999999998865
No 353
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=94.45 E-value=0.041 Score=53.23 Aligned_cols=27 Identities=15% Similarity=0.046 Sum_probs=23.4
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHhcC
Q 016911 241 PWKGILLFGPPGTGKTMLAKAVATECK 267 (380)
Q Consensus 241 ~~~~vLL~GppGtGKT~la~ala~~l~ 267 (380)
.+.-+.|.||+||||||+++.++..++
T Consensus 91 ~p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 91 VPYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 345688999999999999999998874
No 354
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=94.45 E-value=0.015 Score=56.92 Aligned_cols=28 Identities=25% Similarity=0.475 Sum_probs=25.4
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHhc
Q 016911 239 LSPWKGILLFGPPGTGKTMLAKAVATEC 266 (380)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~la~ala~~l 266 (380)
+.++..+.|.||+|||||||++.++...
T Consensus 23 i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 23 VESGEYFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp ECTTCEEEEECCCTHHHHHHHHHHHTSS
T ss_pred EcCCCEEEEECCCCccHHHHHHHHHcCC
Confidence 5677889999999999999999999876
No 355
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=94.40 E-value=0.027 Score=48.56 Aligned_cols=24 Identities=21% Similarity=0.286 Sum_probs=21.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhcC
Q 016911 244 GILLFGPPGTGKTMLAKAVATECK 267 (380)
Q Consensus 244 ~vLL~GppGtGKT~la~ala~~l~ 267 (380)
-.+|+||.|+|||+++++|+..++
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTT
T ss_pred cEEEECCCCCCHHHHHHHHHHHHc
Confidence 678999999999999999988764
No 356
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=94.37 E-value=0.018 Score=56.88 Aligned_cols=28 Identities=29% Similarity=0.418 Sum_probs=25.2
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHhc
Q 016911 239 LSPWKGILLFGPPGTGKTMLAKAVATEC 266 (380)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~la~ala~~l 266 (380)
+.++..+.|.||+|||||||++.++...
T Consensus 26 i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 26 VKDGEFMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred EcCCCEEEEECCCCcHHHHHHHHHHcCC
Confidence 5677789999999999999999999876
No 357
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=94.32 E-value=0.22 Score=44.78 Aligned_cols=18 Identities=33% Similarity=0.530 Sum_probs=15.6
Q ss_pred CceEEEEcCCCCcHHHHH
Q 016911 242 WKGILLFGPPGTGKTMLA 259 (380)
Q Consensus 242 ~~~vLL~GppGtGKT~la 259 (380)
++.+++.+|+|+|||..+
T Consensus 66 ~~~~l~~a~TGsGKT~~~ 83 (245)
T 3dkp_A 66 GRELLASAPTGSGKTLAF 83 (245)
T ss_dssp TCCEEEECCTTSCHHHHH
T ss_pred CCCEEEECCCCCcHHHHH
Confidence 467999999999999864
No 358
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=94.26 E-value=0.021 Score=56.76 Aligned_cols=28 Identities=32% Similarity=0.454 Sum_probs=25.4
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHhc
Q 016911 239 LSPWKGILLFGPPGTGKTMLAKAVATEC 266 (380)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~la~ala~~l 266 (380)
+.++..+.|.||+|||||||+++++...
T Consensus 44 i~~Ge~~~llGpsGsGKSTLLr~iaGl~ 71 (390)
T 3gd7_A 44 ISPGQRVGLLGRTGSGKSTLLSAFLRLL 71 (390)
T ss_dssp ECTTCEEEEEESTTSSHHHHHHHHHTCS
T ss_pred EcCCCEEEEECCCCChHHHHHHHHhCCC
Confidence 6778899999999999999999999854
No 359
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=94.25 E-value=0.019 Score=54.72 Aligned_cols=28 Identities=25% Similarity=0.306 Sum_probs=25.8
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHhc
Q 016911 239 LSPWKGILLFGPPGTGKTMLAKAVATEC 266 (380)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~la~ala~~l 266 (380)
+.++..+.|.||.|+|||||++.+++.+
T Consensus 61 i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 61 IERGQLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp ECTTCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 6788889999999999999999999876
No 360
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=94.22 E-value=0.053 Score=54.83 Aligned_cols=26 Identities=35% Similarity=0.294 Sum_probs=21.3
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHh
Q 016911 240 SPWKGILLFGPPGTGKTMLAKAVATE 265 (380)
Q Consensus 240 ~~~~~vLL~GppGtGKT~la~ala~~ 265 (380)
...+-.++.|+||||||++...++..
T Consensus 159 ~~~~v~~I~G~aGsGKTt~I~~~~~~ 184 (446)
T 3vkw_A 159 SSAKVVLVDGVPGCGKTKEILSRVNF 184 (446)
T ss_dssp CCSEEEEEEECTTSCHHHHHHHHCCT
T ss_pred ccccEEEEEcCCCCCHHHHHHHHhcc
Confidence 34466789999999999999888754
No 361
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=94.14 E-value=0.079 Score=49.11 Aligned_cols=23 Identities=39% Similarity=0.574 Sum_probs=20.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHh
Q 016911 243 KGILLFGPPGTGKTMLAKAVATE 265 (380)
Q Consensus 243 ~~vLL~GppGtGKT~la~ala~~ 265 (380)
+.+++.|+||+|||||..++.+.
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~ 24 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNA 24 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHCC
Confidence 36899999999999999999865
No 362
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=94.13 E-value=0.016 Score=56.91 Aligned_cols=28 Identities=25% Similarity=0.415 Sum_probs=25.3
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHhc
Q 016911 239 LSPWKGILLFGPPGTGKTMLAKAVATEC 266 (380)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~la~ala~~l 266 (380)
+.++..+.|.||+|||||||++.+|...
T Consensus 28 i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 28 IENGERFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp ECTTCEEEEECSCHHHHHHHHHHHHTSS
T ss_pred ECCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 5677889999999999999999999866
No 363
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=94.10 E-value=0.32 Score=45.70 Aligned_cols=23 Identities=22% Similarity=0.092 Sum_probs=18.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHH
Q 016911 242 WKGILLFGPPGTGKTMLAKAVAT 264 (380)
Q Consensus 242 ~~~vLL~GppGtGKT~la~ala~ 264 (380)
...+++.+|+|+|||..+-..+-
T Consensus 44 ~~~~l~~~~TGsGKT~~~~~~~~ 66 (367)
T 1hv8_A 44 EYNIVAQARTGSGKTASFAIPLI 66 (367)
T ss_dssp CSEEEEECCSSSSHHHHHHHHHH
T ss_pred CCCEEEECCCCChHHHHHHHHHH
Confidence 36899999999999998655443
No 364
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=94.04 E-value=0.018 Score=55.41 Aligned_cols=28 Identities=25% Similarity=0.484 Sum_probs=25.9
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHhc
Q 016911 239 LSPWKGILLFGPPGTGKTMLAKAVATEC 266 (380)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~la~ala~~l 266 (380)
+.++..+.|.||+|+|||||++.+++.+
T Consensus 77 i~~Ge~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 77 VMPGQTLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp ECTTCEEEEESSSCHHHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCchHHHHHHHHHcCC
Confidence 6788899999999999999999999866
No 365
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=94.01 E-value=0.023 Score=53.24 Aligned_cols=27 Identities=30% Similarity=0.609 Sum_probs=24.5
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHhc
Q 016911 239 LSPWKGILLFGPPGTGKTMLAKAVATEC 266 (380)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~la~ala~~l 266 (380)
+. +..+.|.||+|+|||||++.++..+
T Consensus 28 i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 28 VN-GEKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp EC-SSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EC-CEEEEEECCCCCCHHHHHHHHhCCC
Confidence 56 7789999999999999999999875
No 366
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=93.98 E-value=0.033 Score=50.46 Aligned_cols=32 Identities=22% Similarity=0.127 Sum_probs=25.8
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhc---CCeEEEE
Q 016911 242 WKGILLFGPPGTGKTMLAKAVATEC---KTTFFNI 273 (380)
Q Consensus 242 ~~~vLL~GppGtGKT~la~ala~~l---~~~~v~v 273 (380)
+.-+.|.|++|+||||+++.++..+ +.+++..
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~~~ 40 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAERLRERGIEVQLT 40 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcccc
Confidence 4668899999999999999999887 3455443
No 367
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=93.93 E-value=0.028 Score=52.85 Aligned_cols=23 Identities=26% Similarity=0.505 Sum_probs=21.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhc
Q 016911 244 GILLFGPPGTGKTMLAKAVATEC 266 (380)
Q Consensus 244 ~vLL~GppGtGKT~la~ala~~l 266 (380)
.+.|.||+|+|||||++++++..
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68899999999999999999865
No 368
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=93.91 E-value=0.053 Score=49.38 Aligned_cols=30 Identities=27% Similarity=0.193 Sum_probs=26.0
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHhcCCeE
Q 016911 241 PWKGILLFGPPGTGKTMLAKAVATECKTTF 270 (380)
Q Consensus 241 ~~~~vLL~GppGtGKT~la~ala~~l~~~~ 270 (380)
.+.-+.+.|++|+||||+++.+++.++.+.
T Consensus 4 ~g~~i~~eG~~g~GKst~~~~l~~~l~~~~ 33 (216)
T 3tmk_A 4 RGKLILIEGLDRTGKTTQCNILYKKLQPNC 33 (216)
T ss_dssp CCCEEEEEECSSSSHHHHHHHHHHHHCSSE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcccc
Confidence 356789999999999999999999997643
No 369
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=93.90 E-value=0.41 Score=47.77 Aligned_cols=23 Identities=26% Similarity=0.573 Sum_probs=18.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHh
Q 016911 243 KGILLFGPPGTGKTMLAKAVATE 265 (380)
Q Consensus 243 ~~vLL~GppGtGKT~la~ala~~ 265 (380)
+++++.+|+|+|||..+-..+..
T Consensus 20 ~~~l~~~~tGsGKT~~~~~~~~~ 42 (555)
T 3tbk_A 20 KNTIICAPTGCGKTFVSLLICEH 42 (555)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CCEEEEeCCCChHHHHHHHHHHH
Confidence 67999999999999886655543
No 370
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=93.88 E-value=0.033 Score=48.67 Aligned_cols=23 Identities=26% Similarity=0.453 Sum_probs=21.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHh
Q 016911 243 KGILLFGPPGTGKTMLAKAVATE 265 (380)
Q Consensus 243 ~~vLL~GppGtGKT~la~ala~~ 265 (380)
..+.+.|++|+|||||++.++..
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHhcC
Confidence 46899999999999999999875
No 371
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=93.86 E-value=0.028 Score=57.87 Aligned_cols=28 Identities=14% Similarity=0.019 Sum_probs=25.0
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHhcCC
Q 016911 241 PWKGILLFGPPGTGKTMLAKAVATECKT 268 (380)
Q Consensus 241 ~~~~vLL~GppGtGKT~la~ala~~l~~ 268 (380)
.+..++|.|.+||||||++++||..++.
T Consensus 394 ~~~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 394 QGFSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp CCEEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred cceEEEecccCCCCHHHHHHHHHHHHHH
Confidence 3467899999999999999999999974
No 372
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=93.81 E-value=0.21 Score=45.65 Aligned_cols=19 Identities=26% Similarity=0.287 Sum_probs=16.2
Q ss_pred CceEEEEcCCCCcHHHHHH
Q 016911 242 WKGILLFGPPGTGKTMLAK 260 (380)
Q Consensus 242 ~~~vLL~GppGtGKT~la~ 260 (380)
++.+++.+|+|+|||..+-
T Consensus 80 ~~~~lv~a~TGsGKT~~~~ 98 (249)
T 3ber_A 80 GRDIIGLAETGSGKTGAFA 98 (249)
T ss_dssp TCCEEEECCTTSCHHHHHH
T ss_pred CCCEEEEcCCCCCchhHhH
Confidence 4789999999999998643
No 373
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=93.81 E-value=0.038 Score=48.60 Aligned_cols=24 Identities=21% Similarity=0.188 Sum_probs=21.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhc
Q 016911 243 KGILLFGPPGTGKTMLAKAVATEC 266 (380)
Q Consensus 243 ~~vLL~GppGtGKT~la~ala~~l 266 (380)
..+.+.|++|+||||++..++..+
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l 28 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAA 28 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHhh
Confidence 468899999999999999998876
No 374
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=93.80 E-value=0.15 Score=49.17 Aligned_cols=27 Identities=22% Similarity=0.288 Sum_probs=23.1
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHhc
Q 016911 240 SPWKGILLFGPPGTGKTMLAKAVATEC 266 (380)
Q Consensus 240 ~~~~~vLL~GppGtGKT~la~ala~~l 266 (380)
..+..+.+.|+||+||||++..++..+
T Consensus 54 ~~~~~i~i~G~~g~GKSTl~~~l~~~~ 80 (341)
T 2p67_A 54 GNTLRLGVTGTPGAGKSTFLEAFGMLL 80 (341)
T ss_dssp SCSEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 345678899999999999999998764
No 375
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=93.78 E-value=0.032 Score=48.63 Aligned_cols=24 Identities=25% Similarity=0.393 Sum_probs=21.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhc
Q 016911 243 KGILLFGPPGTGKTMLAKAVATEC 266 (380)
Q Consensus 243 ~~vLL~GppGtGKT~la~ala~~l 266 (380)
..+.|.|++|+|||||++.++...
T Consensus 30 ~kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 30 FKVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCC
Confidence 468999999999999999998754
No 376
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=93.74 E-value=0.035 Score=56.28 Aligned_cols=28 Identities=21% Similarity=0.284 Sum_probs=24.9
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHhc
Q 016911 239 LSPWKGILLFGPPGTGKTMLAKAVATEC 266 (380)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~la~ala~~l 266 (380)
+.++..+.|.||+|+|||||++.+++..
T Consensus 135 i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 135 NFEGPRVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp SSSCCCEEEEESTTSSHHHHHHHHHHTT
T ss_pred eCCCCEEEEECCCCCCHHHHHHHHhCcc
Confidence 4567789999999999999999999865
No 377
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=93.73 E-value=0.052 Score=54.53 Aligned_cols=60 Identities=22% Similarity=0.316 Sum_probs=40.7
Q ss_pred CeEEEEcCcchhhhhccccchhhHHHHHHHHHHHHHhcCCccCCCcEEEEEE---------eC---CCCCchHHHHhccc
Q 016911 302 PSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAA---------TN---LPWELDAAMLRRLE 369 (380)
Q Consensus 302 p~ILfIDEiD~l~~~~~~~~~~~~~~~~i~~~Ll~~ldgl~~~~~~VlVIat---------TN---~~~~Ld~aLlrRF~ 369 (380)
|.|+||||+|.+.. ...+.|+..++. ....++|+++ ++ .+..+++.+++||.
T Consensus 296 ~~VliIDEa~~l~~-------------~a~~aLlk~lEe---~~~~~~il~tn~~~~~i~~~~~~~~~~~l~~~i~sR~~ 359 (456)
T 2c9o_A 296 PGVLFVDEVHMLDI-------------ECFTYLHRALES---SIAPIVIFASNRGNCVIRGTEDITSPHGIPLDLLDRVM 359 (456)
T ss_dssp ECEEEEESGGGCBH-------------HHHHHHHHHTTS---TTCCEEEEEECCSEEECBTTSSCEEETTCCHHHHTTEE
T ss_pred ceEEEEechhhcCH-------------HHHHHHHHHhhc---cCCCEEEEecCCccccccccccccccccCChhHHhhcc
Confidence 36999999999832 355677777753 3344544454 22 15679999999997
Q ss_pred ceeEecCCC
Q 016911 370 KRVSFSLIA 378 (380)
Q Consensus 370 ~~I~~plPd 378 (380)
. +.|+.|+
T Consensus 360 ~-~~~~~~~ 367 (456)
T 2c9o_A 360 I-IRTMLYT 367 (456)
T ss_dssp E-EECCCCC
T ss_pred e-eeCCCCC
Confidence 7 4777665
No 378
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=93.69 E-value=0.034 Score=51.06 Aligned_cols=26 Identities=27% Similarity=0.135 Sum_probs=20.3
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHhc
Q 016911 241 PWKGILLFGPPGTGKTMLAKAVATEC 266 (380)
Q Consensus 241 ~~~~vLL~GppGtGKT~la~ala~~l 266 (380)
.+.-+.|.|++|+||||+++.+++.+
T Consensus 24 ~g~~I~~eG~~GsGKsT~~~~l~~~l 49 (227)
T 3v9p_A 24 RGKFITFEGIDGAGKTTHLQWFCDRL 49 (227)
T ss_dssp CCCEEEEECCC---CHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 45678899999999999999999987
No 379
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=93.68 E-value=0.041 Score=45.48 Aligned_cols=23 Identities=22% Similarity=0.504 Sum_probs=20.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHh
Q 016911 243 KGILLFGPPGTGKTMLAKAVATE 265 (380)
Q Consensus 243 ~~vLL~GppGtGKT~la~ala~~ 265 (380)
..+++.|++|+|||+++..+.+.
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 36899999999999999999864
No 380
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=93.68 E-value=0.041 Score=49.85 Aligned_cols=26 Identities=23% Similarity=0.221 Sum_probs=23.2
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHh
Q 016911 240 SPWKGILLFGPPGTGKTMLAKAVATE 265 (380)
Q Consensus 240 ~~~~~vLL~GppGtGKT~la~ala~~ 265 (380)
.++..+.|.|+.|+||||+++.++..
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhc
Confidence 45567889999999999999999987
No 381
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=93.66 E-value=0.043 Score=49.90 Aligned_cols=31 Identities=29% Similarity=0.341 Sum_probs=26.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhcCCeEEEEe
Q 016911 243 KGILLFGPPGTGKTMLAKAVATECKTTFFNIS 274 (380)
Q Consensus 243 ~~vLL~GppGtGKT~la~ala~~l~~~~v~v~ 274 (380)
-.+-|+|..||||||+++.++. +|.+++..+
T Consensus 10 ~~iglTGgigsGKStv~~~l~~-~g~~vidaD 40 (210)
T 4i1u_A 10 YAIGLTGGIGSGKTTVADLFAA-RGASLVDTD 40 (210)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH-TTCEEEEHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH-CCCcEEECc
Confidence 4588999999999999999998 888775443
No 382
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=93.64 E-value=0.047 Score=48.10 Aligned_cols=26 Identities=31% Similarity=0.482 Sum_probs=22.7
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHhc
Q 016911 241 PWKGILLFGPPGTGKTMLAKAVATEC 266 (380)
Q Consensus 241 ~~~~vLL~GppGtGKT~la~ala~~l 266 (380)
....+++.|++|+|||+|+.+++...
T Consensus 11 ~~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 11 YQPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34689999999999999999998754
No 383
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=93.55 E-value=0.055 Score=45.59 Aligned_cols=25 Identities=24% Similarity=0.264 Sum_probs=22.0
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHH
Q 016911 240 SPWKGILLFGPPGTGKTMLAKAVAT 264 (380)
Q Consensus 240 ~~~~~vLL~GppGtGKT~la~ala~ 264 (380)
.....+++.|++|+|||+|+.++..
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~ 30 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRH 30 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhC
Confidence 4456899999999999999999976
No 384
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=93.55 E-value=0.039 Score=48.49 Aligned_cols=24 Identities=29% Similarity=0.254 Sum_probs=21.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhc
Q 016911 243 KGILLFGPPGTGKTMLAKAVATEC 266 (380)
Q Consensus 243 ~~vLL~GppGtGKT~la~ala~~l 266 (380)
..+.+.|++|+||||+++.+...+
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhc
Confidence 568899999999999999998865
No 385
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=93.54 E-value=0.16 Score=52.53 Aligned_cols=37 Identities=24% Similarity=0.253 Sum_probs=29.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhcC---CeEEEEecchh
Q 016911 242 WKGILLFGPPGTGKTMLAKAVATECK---TTFFNISASSV 278 (380)
Q Consensus 242 ~~~vLL~GppGtGKT~la~ala~~l~---~~~v~v~~s~l 278 (380)
+..++|.|++|+||||+++.++..++ .++..++...+
T Consensus 372 ~~~I~l~G~~GsGKSTia~~La~~L~~~G~~~~~ld~D~i 411 (546)
T 2gks_A 372 GFCVWLTGLPCAGKSTIAEILATMLQARGRKVTLLDGDVV 411 (546)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECHHHH
T ss_pred ceEEEccCCCCCCHHHHHHHHHHHhhhcCCeEEEECchHh
Confidence 45688999999999999999999874 45666665443
No 386
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=93.54 E-value=0.023 Score=49.84 Aligned_cols=25 Identities=20% Similarity=0.263 Sum_probs=22.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhcC
Q 016911 243 KGILLFGPPGTGKTMLAKAVATECK 267 (380)
Q Consensus 243 ~~vLL~GppGtGKT~la~ala~~l~ 267 (380)
..+.|.|++|+|||||++.++..+.
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~ 27 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILR 27 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhh
Confidence 4678999999999999999998873
No 387
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=93.53 E-value=0.14 Score=49.93 Aligned_cols=21 Identities=29% Similarity=0.463 Sum_probs=16.9
Q ss_pred CceEEEEcCCCCcHHHHHHHH
Q 016911 242 WKGILLFGPPGTGKTMLAKAV 262 (380)
Q Consensus 242 ~~~vLL~GppGtGKT~la~al 262 (380)
++.+++.+|+|+|||..+...
T Consensus 36 ~~~~lv~apTGsGKT~~~l~~ 56 (414)
T 3oiy_A 36 GKSFTMVAPTGVGKTTFGMMT 56 (414)
T ss_dssp TCCEECCSCSSSSHHHHHHHH
T ss_pred CCCEEEEeCCCCCHHHHHHHH
Confidence 468999999999999954444
No 388
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=93.52 E-value=0.038 Score=54.48 Aligned_cols=28 Identities=21% Similarity=0.249 Sum_probs=25.6
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHhc
Q 016911 239 LSPWKGILLFGPPGTGKTMLAKAVATEC 266 (380)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~la~ala~~l 266 (380)
+.++..+.|.||+|+|||||+++++...
T Consensus 51 i~~Gei~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 51 VPAGQIYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EcCCCEEEEEcCCCchHHHHHHHHhcCC
Confidence 6777889999999999999999999866
No 389
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=93.52 E-value=0.15 Score=47.55 Aligned_cols=23 Identities=35% Similarity=0.466 Sum_probs=20.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHh
Q 016911 243 KGILLFGPPGTGKTMLAKAVATE 265 (380)
Q Consensus 243 ~~vLL~GppGtGKT~la~ala~~ 265 (380)
..+.+.|.||+|||||..++.+.
T Consensus 4 ~~I~lvG~~n~GKSTLin~l~g~ 26 (274)
T 3i8s_A 4 LTIGLIGNPNSGKTTLFNQLTGS 26 (274)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTT
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 57899999999999999999864
No 390
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=93.50 E-value=0.13 Score=47.59 Aligned_cols=23 Identities=35% Similarity=0.426 Sum_probs=20.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHh
Q 016911 243 KGILLFGPPGTGKTMLAKAVATE 265 (380)
Q Consensus 243 ~~vLL~GppGtGKT~la~ala~~ 265 (380)
..+++.|+||+|||+|..++.+.
T Consensus 6 ~kI~lvG~~nvGKTsL~n~l~g~ 28 (258)
T 3a1s_A 6 VKVALAGCPNVGKTSLFNALTGT 28 (258)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHHCC
Confidence 46899999999999999999863
No 391
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=93.44 E-value=0.048 Score=45.31 Aligned_cols=23 Identities=13% Similarity=0.278 Sum_probs=20.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHh
Q 016911 243 KGILLFGPPGTGKTMLAKAVATE 265 (380)
Q Consensus 243 ~~vLL~GppGtGKT~la~ala~~ 265 (380)
..+++.|++|+|||+|+.++...
T Consensus 6 ~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 6 IKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEEECcCCCCHHHHHHHHHcC
Confidence 57899999999999999999864
No 392
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=93.43 E-value=0.046 Score=45.19 Aligned_cols=24 Identities=21% Similarity=0.455 Sum_probs=21.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHh
Q 016911 242 WKGILLFGPPGTGKTMLAKAVATE 265 (380)
Q Consensus 242 ~~~vLL~GppGtGKT~la~ala~~ 265 (380)
...+++.|++|+|||+|+.++...
T Consensus 4 ~~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 4 LHKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHhC
Confidence 357999999999999999999864
No 393
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=93.39 E-value=0.079 Score=51.59 Aligned_cols=38 Identities=16% Similarity=0.094 Sum_probs=30.2
Q ss_pred cCCCCceEEEEcCCCCcHHHHHHHHHHhc---CCeEEEEec
Q 016911 238 LLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISA 275 (380)
Q Consensus 238 ~~~~~~~vLL~GppGtGKT~la~ala~~l---~~~~v~v~~ 275 (380)
++.++.-++|.|+||+|||+++..+|... +.++..++.
T Consensus 42 Gl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSl 82 (338)
T 4a1f_A 42 GFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSL 82 (338)
T ss_dssp SBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEES
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeC
Confidence 45777889999999999999999998764 566655544
No 394
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=93.36 E-value=0.048 Score=45.04 Aligned_cols=23 Identities=26% Similarity=0.475 Sum_probs=20.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHh
Q 016911 243 KGILLFGPPGTGKTMLAKAVATE 265 (380)
Q Consensus 243 ~~vLL~GppGtGKT~la~ala~~ 265 (380)
..+++.|++|+|||+|+.++...
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 47999999999999999998754
No 395
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=93.33 E-value=0.063 Score=47.44 Aligned_cols=24 Identities=25% Similarity=0.459 Sum_probs=21.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhc
Q 016911 243 KGILLFGPPGTGKTMLAKAVATEC 266 (380)
Q Consensus 243 ~~vLL~GppGtGKT~la~ala~~l 266 (380)
..+++.|++|+||||++..++..+
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 578999999999999999998875
No 396
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=93.32 E-value=0.04 Score=56.10 Aligned_cols=25 Identities=36% Similarity=0.473 Sum_probs=21.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhc
Q 016911 242 WKGILLFGPPGTGKTMLAKAVATEC 266 (380)
Q Consensus 242 ~~~vLL~GppGtGKT~la~ala~~l 266 (380)
+..++|+||+|+|||+|+..++...
T Consensus 151 Gq~~~i~G~sGvGKTtL~~~l~~~~ 175 (473)
T 1sky_E 151 GGKIGLFGGAGVGKTVLIQELIHNI 175 (473)
T ss_dssp TCEEEEECCSSSCHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCccHHHHHHHhhh
Confidence 4568999999999999999887654
No 397
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=93.28 E-value=0.096 Score=50.53 Aligned_cols=25 Identities=28% Similarity=0.369 Sum_probs=22.7
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHh
Q 016911 241 PWKGILLFGPPGTGKTMLAKAVATE 265 (380)
Q Consensus 241 ~~~~vLL~GppGtGKT~la~ala~~ 265 (380)
.+.+++|.|++|+|||++|.++...
T Consensus 143 ~g~~vl~~G~sG~GKSt~a~~l~~~ 167 (314)
T 1ko7_A 143 YGVGVLITGDSGIGKSETALELIKR 167 (314)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHT
T ss_pred CCEEEEEEeCCCCCHHHHHHHHHhc
Confidence 5689999999999999999999874
No 398
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=93.27 E-value=0.046 Score=46.77 Aligned_cols=25 Identities=28% Similarity=0.421 Sum_probs=21.6
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHh
Q 016911 241 PWKGILLFGPPGTGKTMLAKAVATE 265 (380)
Q Consensus 241 ~~~~vLL~GppGtGKT~la~ala~~ 265 (380)
++..++|.|+||+|||+|..+++..
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4467999999999999999999874
No 399
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=93.25 E-value=0.043 Score=46.37 Aligned_cols=23 Identities=35% Similarity=0.550 Sum_probs=20.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHh
Q 016911 243 KGILLFGPPGTGKTMLAKAVATE 265 (380)
Q Consensus 243 ~~vLL~GppGtGKT~la~ala~~ 265 (380)
..+.+.|++|+|||+|.+.+++.
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999999863
No 400
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=93.25 E-value=0.049 Score=50.29 Aligned_cols=26 Identities=27% Similarity=0.275 Sum_probs=23.1
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHhc
Q 016911 241 PWKGILLFGPPGTGKTMLAKAVATEC 266 (380)
Q Consensus 241 ~~~~vLL~GppGtGKT~la~ala~~l 266 (380)
.+.-+.|.|++|+||||+++.++..+
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~l 51 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVETL 51 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 34678899999999999999999877
No 401
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=93.22 E-value=0.051 Score=44.76 Aligned_cols=24 Identities=21% Similarity=0.400 Sum_probs=20.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhc
Q 016911 243 KGILLFGPPGTGKTMLAKAVATEC 266 (380)
Q Consensus 243 ~~vLL~GppGtGKT~la~ala~~l 266 (380)
..+++.|++|+|||+|+..+....
T Consensus 4 ~~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 4 YKLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHhCc
Confidence 468999999999999999997643
No 402
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=93.21 E-value=0.23 Score=47.76 Aligned_cols=21 Identities=33% Similarity=0.229 Sum_probs=16.9
Q ss_pred CceEEEEcCCCCcHHHHHHHH
Q 016911 242 WKGILLFGPPGTGKTMLAKAV 262 (380)
Q Consensus 242 ~~~vLL~GppGtGKT~la~al 262 (380)
++.+++.+|+|+|||..+-..
T Consensus 58 ~~~~li~a~TGsGKT~~~~~~ 78 (400)
T 1s2m_A 58 GRDILARAKNGTGKTAAFVIP 78 (400)
T ss_dssp TCCEEEECCTTSCHHHHHHHH
T ss_pred CCCEEEECCCCcHHHHHHHHH
Confidence 367999999999999865443
No 403
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=93.19 E-value=0.064 Score=44.74 Aligned_cols=24 Identities=29% Similarity=0.393 Sum_probs=21.3
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHH
Q 016911 241 PWKGILLFGPPGTGKTMLAKAVAT 264 (380)
Q Consensus 241 ~~~~vLL~GppGtGKT~la~ala~ 264 (380)
....+++.|++|+|||+|+.++..
T Consensus 6 ~~~~i~v~G~~~~GKssl~~~l~~ 29 (171)
T 1upt_A 6 REMRILILGLDGAGKTTILYRLQV 29 (171)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHhc
Confidence 446799999999999999999975
No 404
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=93.19 E-value=0.022 Score=49.87 Aligned_cols=28 Identities=11% Similarity=0.133 Sum_probs=22.9
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHhc
Q 016911 239 LSPWKGILLFGPPGTGKTMLAKAVATEC 266 (380)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~la~ala~~l 266 (380)
..++..+.|.|++|+|||||++++++..
T Consensus 23 ~~~~~~v~lvG~~g~GKSTLl~~l~g~~ 50 (210)
T 1pui_A 23 SDTGIEVAFAGRSNAGKSSALNTLTNQK 50 (210)
T ss_dssp CSCSEEEEEEECTTSSHHHHHTTTCCC-
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3556679999999999999999987543
No 405
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=93.17 E-value=0.078 Score=55.53 Aligned_cols=24 Identities=38% Similarity=0.589 Sum_probs=19.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhc
Q 016911 243 KGILLFGPPGTGKTMLAKAVATEC 266 (380)
Q Consensus 243 ~~vLL~GppGtGKT~la~ala~~l 266 (380)
..++++||||||||+++..++..+
T Consensus 196 ~~~li~GppGTGKT~~~~~~i~~l 219 (624)
T 2gk6_A 196 PLSLIQGPPGTGKTVTSATIVYHL 219 (624)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEECCCCCCHHHHHHHHHHHH
Confidence 468999999999999887776543
No 406
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=93.16 E-value=0.037 Score=47.69 Aligned_cols=22 Identities=27% Similarity=0.560 Sum_probs=20.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHH
Q 016911 243 KGILLFGPPGTGKTMLAKAVAT 264 (380)
Q Consensus 243 ~~vLL~GppGtGKT~la~ala~ 264 (380)
..+++.|++|+|||+|++.++.
T Consensus 3 ~kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 3 MKLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp CEEEEESCTTSSHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 3589999999999999999986
No 407
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=93.16 E-value=0.058 Score=49.41 Aligned_cols=28 Identities=25% Similarity=0.135 Sum_probs=23.9
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHhcCC
Q 016911 241 PWKGILLFGPPGTGKTMLAKAVATECKT 268 (380)
Q Consensus 241 ~~~~vLL~GppGtGKT~la~ala~~l~~ 268 (380)
.+.-+.|.|++|+||||+++.+++.++.
T Consensus 20 ~~~~i~~~G~~g~GKst~~~~l~~~l~~ 47 (223)
T 3ld9_A 20 GSMFITFEGIDGSGKTTQSHLLAEYLSE 47 (223)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 3466888999999999999999987754
No 408
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=93.12 E-value=0.046 Score=45.42 Aligned_cols=24 Identities=17% Similarity=0.332 Sum_probs=20.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhc
Q 016911 243 KGILLFGPPGTGKTMLAKAVATEC 266 (380)
Q Consensus 243 ~~vLL~GppGtGKT~la~ala~~l 266 (380)
..+++.|++|+|||+|+.++...-
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 4 IKLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHhcCC
Confidence 468999999999999999997543
No 409
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=93.11 E-value=0.05 Score=45.61 Aligned_cols=24 Identities=42% Similarity=0.639 Sum_probs=21.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHh
Q 016911 242 WKGILLFGPPGTGKTMLAKAVATE 265 (380)
Q Consensus 242 ~~~vLL~GppGtGKT~la~ala~~ 265 (380)
...+++.|++|+|||+|+..+...
T Consensus 4 ~~ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 4 LYRVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEEEECCCCccHHHHHHHHhcC
Confidence 357999999999999999999754
No 410
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=93.08 E-value=0.2 Score=45.72 Aligned_cols=25 Identities=28% Similarity=0.452 Sum_probs=21.7
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHh
Q 016911 241 PWKGILLFGPPGTGKTMLAKAVATE 265 (380)
Q Consensus 241 ~~~~vLL~GppGtGKT~la~ala~~ 265 (380)
+...++|.|++|+|||||..++...
T Consensus 21 ~~~~I~lvG~~g~GKStl~n~l~~~ 45 (260)
T 2xtp_A 21 SELRIILVGKTGTGKSAAGNSILRK 45 (260)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHTS
T ss_pred CceEEEEECCCCCCHHHHHHHHhCC
Confidence 3468999999999999999999753
No 411
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=93.05 E-value=0.056 Score=45.51 Aligned_cols=24 Identities=25% Similarity=0.487 Sum_probs=21.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHh
Q 016911 242 WKGILLFGPPGTGKTMLAKAVATE 265 (380)
Q Consensus 242 ~~~vLL~GppGtGKT~la~ala~~ 265 (380)
...+++.|++|+|||+|+..+...
T Consensus 8 ~~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 8 ILKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHhC
Confidence 367999999999999999998764
No 412
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=93.00 E-value=0.053 Score=46.31 Aligned_cols=23 Identities=35% Similarity=0.550 Sum_probs=20.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHh
Q 016911 243 KGILLFGPPGTGKTMLAKAVATE 265 (380)
Q Consensus 243 ~~vLL~GppGtGKT~la~ala~~ 265 (380)
..+++.|++|+|||+|++.++..
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 57999999999999999999873
No 413
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=92.96 E-value=0.062 Score=44.70 Aligned_cols=24 Identities=21% Similarity=0.387 Sum_probs=21.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhc
Q 016911 243 KGILLFGPPGTGKTMLAKAVATEC 266 (380)
Q Consensus 243 ~~vLL~GppGtGKT~la~ala~~l 266 (380)
..+++.|++|+|||+|+.++....
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 579999999999999999998654
No 414
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=92.95 E-value=0.081 Score=53.23 Aligned_cols=29 Identities=24% Similarity=0.332 Sum_probs=25.5
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHhcCC
Q 016911 240 SPWKGILLFGPPGTGKTMLAKAVATECKT 268 (380)
Q Consensus 240 ~~~~~vLL~GppGtGKT~la~ala~~l~~ 268 (380)
.++..+.|.||+|+|||||++.+++....
T Consensus 155 ~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~ 183 (438)
T 2dpy_A 155 GRGQRMGLFAGSGVGKSVLLGMMARYTRA 183 (438)
T ss_dssp BTTCEEEEEECTTSSHHHHHHHHHHHSCC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcccCC
Confidence 45678999999999999999999998853
No 415
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=92.94 E-value=0.066 Score=49.16 Aligned_cols=25 Identities=20% Similarity=0.474 Sum_probs=21.6
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHh
Q 016911 241 PWKGILLFGPPGTGKTMLAKAVATE 265 (380)
Q Consensus 241 ~~~~vLL~GppGtGKT~la~ala~~ 265 (380)
+...++|.|.||+|||+|+.++.+.
T Consensus 20 ~~l~I~lvG~~g~GKSSlin~l~~~ 44 (247)
T 3lxw_A 20 STRRLILVGRTGAGKSATGNSILGQ 44 (247)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHTS
T ss_pred CceEEEEECCCCCcHHHHHHHHhCC
Confidence 3467999999999999999999753
No 416
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=92.90 E-value=0.059 Score=44.82 Aligned_cols=22 Identities=27% Similarity=0.472 Sum_probs=20.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHH
Q 016911 243 KGILLFGPPGTGKTMLAKAVAT 264 (380)
Q Consensus 243 ~~vLL~GppGtGKT~la~ala~ 264 (380)
..+++.|++|+|||+|+.++..
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 4689999999999999999986
No 417
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=92.87 E-value=0.064 Score=45.11 Aligned_cols=23 Identities=30% Similarity=0.497 Sum_probs=20.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHh
Q 016911 243 KGILLFGPPGTGKTMLAKAVATE 265 (380)
Q Consensus 243 ~~vLL~GppGtGKT~la~ala~~ 265 (380)
..+++.|++|+|||+|+..+...
T Consensus 8 ~~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 8 FKVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 57999999999999999999754
No 418
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=92.84 E-value=0.074 Score=45.39 Aligned_cols=24 Identities=17% Similarity=0.319 Sum_probs=21.6
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHh
Q 016911 242 WKGILLFGPPGTGKTMLAKAVATE 265 (380)
Q Consensus 242 ~~~vLL~GppGtGKT~la~ala~~ 265 (380)
...+++.|++|+|||+|+.++...
T Consensus 7 ~~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 7 SYKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 467999999999999999999875
No 419
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=92.81 E-value=0.062 Score=44.68 Aligned_cols=23 Identities=35% Similarity=0.538 Sum_probs=20.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHh
Q 016911 243 KGILLFGPPGTGKTMLAKAVATE 265 (380)
Q Consensus 243 ~~vLL~GppGtGKT~la~ala~~ 265 (380)
..+++.|++|+|||+|+.++...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 46899999999999999999754
No 420
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=92.79 E-value=0.068 Score=44.55 Aligned_cols=23 Identities=26% Similarity=0.313 Sum_probs=20.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHh
Q 016911 243 KGILLFGPPGTGKTMLAKAVATE 265 (380)
Q Consensus 243 ~~vLL~GppGtGKT~la~ala~~ 265 (380)
..+++.|++|+|||+|+.++...
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 7 FKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 57999999999999999999864
No 421
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=92.78 E-value=0.093 Score=51.32 Aligned_cols=34 Identities=21% Similarity=0.292 Sum_probs=26.3
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHhc---CCeEEEEe
Q 016911 241 PWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNIS 274 (380)
Q Consensus 241 ~~~~vLL~GppGtGKT~la~ala~~l---~~~~v~v~ 274 (380)
...++++.||+|+|||++++.++..+ +..++.++
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~D 70 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREYMQGSRVIIID 70 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEEe
Confidence 45689999999999999999998654 44444444
No 422
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=92.77 E-value=0.064 Score=48.63 Aligned_cols=25 Identities=32% Similarity=0.324 Sum_probs=22.5
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhc
Q 016911 242 WKGILLFGPPGTGKTMLAKAVATEC 266 (380)
Q Consensus 242 ~~~vLL~GppGtGKT~la~ala~~l 266 (380)
+.-+.|.|++|+||||+++.++..+
T Consensus 3 g~~i~~eG~~gsGKsT~~~~l~~~l 27 (213)
T 4tmk_A 3 SKYIVIEGLEGAGKTTARNVVVETL 27 (213)
T ss_dssp CCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4568899999999999999999887
No 423
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=92.73 E-value=0.068 Score=44.31 Aligned_cols=23 Identities=22% Similarity=0.434 Sum_probs=20.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHh
Q 016911 243 KGILLFGPPGTGKTMLAKAVATE 265 (380)
Q Consensus 243 ~~vLL~GppGtGKT~la~ala~~ 265 (380)
..+++.|++|+|||+|..++...
T Consensus 4 ~ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 4 YKLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46899999999999999999864
No 424
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=92.73 E-value=0.11 Score=49.69 Aligned_cols=24 Identities=38% Similarity=0.407 Sum_probs=21.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhc
Q 016911 243 KGILLFGPPGTGKTMLAKAVATEC 266 (380)
Q Consensus 243 ~~vLL~GppGtGKT~la~ala~~l 266 (380)
.-++|.|+.|+||||+++.+....
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSC
T ss_pred cEEEEEecCCCCHHHHHHHHHhhc
Confidence 468899999999999999999764
No 425
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=92.72 E-value=0.072 Score=44.83 Aligned_cols=24 Identities=33% Similarity=0.448 Sum_probs=20.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHh
Q 016911 242 WKGILLFGPPGTGKTMLAKAVATE 265 (380)
Q Consensus 242 ~~~vLL~GppGtGKT~la~ala~~ 265 (380)
...+++.|++|+|||+|+..+...
T Consensus 6 ~~ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 6 QLKIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHGG
T ss_pred eEEEEEECcCCCCHHHHHHHHHhC
Confidence 357999999999999999999753
No 426
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=92.70 E-value=0.064 Score=55.36 Aligned_cols=28 Identities=29% Similarity=0.382 Sum_probs=25.4
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHhc
Q 016911 239 LSPWKGILLFGPPGTGKTMLAKAVATEC 266 (380)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~la~ala~~l 266 (380)
+.++..+.|.||.|+|||||++.++..+
T Consensus 44 i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~ 71 (538)
T 1yqt_A 44 VKEGMVVGIVGPNGTGKSTAVKILAGQL 71 (538)
T ss_dssp CCTTSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 5778889999999999999999999865
No 427
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=92.70 E-value=0.072 Score=44.20 Aligned_cols=22 Identities=23% Similarity=0.377 Sum_probs=20.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHH
Q 016911 243 KGILLFGPPGTGKTMLAKAVAT 264 (380)
Q Consensus 243 ~~vLL~GppGtGKT~la~ala~ 264 (380)
..+++.|++|+|||+|+.++..
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~ 28 (170)
T 1r2q_A 7 FKLVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHc
Confidence 4689999999999999999986
No 428
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=92.67 E-value=0.24 Score=48.41 Aligned_cols=24 Identities=25% Similarity=0.284 Sum_probs=20.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhc
Q 016911 243 KGILLFGPPGTGKTMLAKAVATEC 266 (380)
Q Consensus 243 ~~vLL~GppGtGKT~la~ala~~l 266 (380)
..+.|.|+||+|||||.+++++..
T Consensus 180 ~~V~lvG~~naGKSTLln~L~~~~ 203 (364)
T 2qtf_A 180 PSIGIVGYTNSGKTSLFNSLTGLT 203 (364)
T ss_dssp CEEEEECBTTSSHHHHHHHHHCC-
T ss_pred cEEEEECCCCCCHHHHHHHHHCCC
Confidence 348899999999999999998643
No 429
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=92.67 E-value=0.071 Score=45.31 Aligned_cols=23 Identities=26% Similarity=0.341 Sum_probs=20.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHh
Q 016911 243 KGILLFGPPGTGKTMLAKAVATE 265 (380)
Q Consensus 243 ~~vLL~GppGtGKT~la~ala~~ 265 (380)
..+++.|++|+|||+|+.++...
T Consensus 12 ~ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 12 IKFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 57999999999999999999863
No 430
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=92.63 E-value=0.099 Score=52.00 Aligned_cols=37 Identities=27% Similarity=0.318 Sum_probs=29.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhcCCeEEEEecc-hhh
Q 016911 243 KGILLFGPPGTGKTMLAKAVATECKTTFFNISAS-SVV 279 (380)
Q Consensus 243 ~~vLL~GppGtGKT~la~ala~~l~~~~v~v~~s-~l~ 279 (380)
..+++.+|+|+|||.++-.++...+.+.+.+-+. .+.
T Consensus 109 ~~~ll~~~TGsGKT~~~l~~i~~~~~~~Lvl~P~~~L~ 146 (472)
T 2fwr_A 109 KRGCIVLPTGSGKTHVAMAAINELSTPTLIVVPTLALA 146 (472)
T ss_dssp TEEEEECCTTSCHHHHHHHHHHHHCSCEEEEESSHHHH
T ss_pred CCEEEEeCCCCCHHHHHHHHHHHcCCCEEEEECCHHHH
Confidence 4599999999999999988888777766666554 443
No 431
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=92.61 E-value=0.082 Score=51.52 Aligned_cols=30 Identities=20% Similarity=0.288 Sum_probs=25.9
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHhcCCe
Q 016911 240 SPWKGILLFGPPGTGKTMLAKAVATECKTT 269 (380)
Q Consensus 240 ~~~~~vLL~GppGtGKT~la~ala~~l~~~ 269 (380)
.++..+.|.||+|+|||||++.+++.....
T Consensus 69 ~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~ 98 (347)
T 2obl_A 69 GIGQRIGIFAGSGVGKSTLLGMICNGASAD 98 (347)
T ss_dssp ETTCEEEEEECTTSSHHHHHHHHHHHSCCS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 456789999999999999999999988543
No 432
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=92.56 E-value=0.16 Score=47.49 Aligned_cols=23 Identities=35% Similarity=0.544 Sum_probs=20.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHh
Q 016911 243 KGILLFGPPGTGKTMLAKAVATE 265 (380)
Q Consensus 243 ~~vLL~GppGtGKT~la~ala~~ 265 (380)
..+.|.|+||+|||||..++.+.
T Consensus 4 ~kI~lvG~~nvGKSTL~n~L~g~ 26 (272)
T 3b1v_A 4 TEIALIGNPNSGKTSLFNLITGH 26 (272)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCC
T ss_pred eEEEEECCCCCCHHHHHHHHHCC
Confidence 46899999999999999999864
No 433
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=92.52 E-value=0.078 Score=43.97 Aligned_cols=22 Identities=27% Similarity=0.376 Sum_probs=19.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHHh
Q 016911 244 GILLFGPPGTGKTMLAKAVATE 265 (380)
Q Consensus 244 ~vLL~GppGtGKT~la~ala~~ 265 (380)
.+++.|++|+|||+|+..+...
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4899999999999999999753
No 434
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=92.48 E-value=0.63 Score=42.73 Aligned_cols=18 Identities=28% Similarity=0.440 Sum_probs=15.7
Q ss_pred ceEEEEcCCCCcHHHHHH
Q 016911 243 KGILLFGPPGTGKTMLAK 260 (380)
Q Consensus 243 ~~vLL~GppGtGKT~la~ 260 (380)
+.+++.+|+|+|||..+.
T Consensus 92 ~~~lv~a~TGsGKT~~~~ 109 (262)
T 3ly5_A 92 RDLLAAAKTGSGKTLAFL 109 (262)
T ss_dssp CCCEECCCTTSCHHHHHH
T ss_pred CcEEEEccCCCCchHHHH
Confidence 679999999999998654
No 435
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=92.47 E-value=0.076 Score=44.90 Aligned_cols=23 Identities=22% Similarity=0.485 Sum_probs=20.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHh
Q 016911 243 KGILLFGPPGTGKTMLAKAVATE 265 (380)
Q Consensus 243 ~~vLL~GppGtGKT~la~ala~~ 265 (380)
..+++.|++|+|||+|+.++...
T Consensus 19 ~ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 19 HKVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHhhC
Confidence 57999999999999999999863
No 436
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=92.45 E-value=0.084 Score=44.84 Aligned_cols=24 Identities=29% Similarity=0.393 Sum_probs=21.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhc
Q 016911 243 KGILLFGPPGTGKTMLAKAVATEC 266 (380)
Q Consensus 243 ~~vLL~GppGtGKT~la~ala~~l 266 (380)
.-.+|+||.|+|||++..|+.-.+
T Consensus 24 g~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 24 GINLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 457899999999999999998655
No 437
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=92.44 E-value=0.077 Score=44.26 Aligned_cols=21 Identities=33% Similarity=0.605 Sum_probs=19.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHH
Q 016911 244 GILLFGPPGTGKTMLAKAVAT 264 (380)
Q Consensus 244 ~vLL~GppGtGKT~la~ala~ 264 (380)
.+++.|++|+|||+|+..+..
T Consensus 4 ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 589999999999999999964
No 438
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=92.41 E-value=0.8 Score=43.34 Aligned_cols=21 Identities=24% Similarity=0.260 Sum_probs=17.3
Q ss_pred CceEEEEcCCCCcHHHHHHHH
Q 016911 242 WKGILLFGPPGTGKTMLAKAV 262 (380)
Q Consensus 242 ~~~vLL~GppGtGKT~la~al 262 (380)
+.++++.+|+|+|||..+-..
T Consensus 44 ~~~~lv~a~TGsGKT~~~~~~ 64 (395)
T 3pey_A 44 PRNMIAQSQSGTGKTAAFSLT 64 (395)
T ss_dssp CCCEEEECCTTSCHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHH
Confidence 478999999999999865433
No 439
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=92.37 E-value=0.083 Score=44.31 Aligned_cols=24 Identities=21% Similarity=0.337 Sum_probs=21.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhc
Q 016911 243 KGILLFGPPGTGKTMLAKAVATEC 266 (380)
Q Consensus 243 ~~vLL~GppGtGKT~la~ala~~l 266 (380)
..+++.|++|+|||+|+..+....
T Consensus 16 ~~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 16 FKYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 579999999999999999998643
No 440
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=92.34 E-value=0.068 Score=55.91 Aligned_cols=24 Identities=29% Similarity=0.408 Sum_probs=20.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhc
Q 016911 243 KGILLFGPPGTGKTMLAKAVATEC 266 (380)
Q Consensus 243 ~~vLL~GppGtGKT~la~ala~~l 266 (380)
+.+++.|+||||||+++..+...+
T Consensus 165 ~~~vi~G~pGTGKTt~l~~ll~~l 188 (608)
T 1w36_D 165 RISVISGGPGTGKTTTVAKLLAAL 188 (608)
T ss_dssp SEEEEECCTTSTHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCCHHHHHHHHHHHH
Confidence 679999999999999988776544
No 441
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=92.34 E-value=0.085 Score=45.02 Aligned_cols=24 Identities=29% Similarity=0.375 Sum_probs=21.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhc
Q 016911 243 KGILLFGPPGTGKTMLAKAVATEC 266 (380)
Q Consensus 243 ~~vLL~GppGtGKT~la~ala~~l 266 (380)
..+++.|++|+|||+|++.+.+..
T Consensus 15 ~ki~vvG~~~~GKssL~~~l~~~~ 38 (198)
T 3t1o_A 15 FKIVYYGPGLSGKTTNLKWIYSKV 38 (198)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHTS
T ss_pred cEEEEECCCCCCHHHHHHHHHhhc
Confidence 579999999999999999988765
No 442
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=92.34 E-value=0.078 Score=45.50 Aligned_cols=24 Identities=21% Similarity=0.332 Sum_probs=21.3
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHh
Q 016911 242 WKGILLFGPPGTGKTMLAKAVATE 265 (380)
Q Consensus 242 ~~~vLL~GppGtGKT~la~ala~~ 265 (380)
...+++.|++|+|||+|..++.+.
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 23 LPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 467999999999999999999754
No 443
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=92.30 E-value=0.078 Score=44.56 Aligned_cols=23 Identities=22% Similarity=0.413 Sum_probs=21.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHh
Q 016911 243 KGILLFGPPGTGKTMLAKAVATE 265 (380)
Q Consensus 243 ~~vLL~GppGtGKT~la~ala~~ 265 (380)
..+++.|++|+|||+|+.++...
T Consensus 10 ~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 10 HKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 57999999999999999999865
No 444
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=92.30 E-value=0.079 Score=44.44 Aligned_cols=23 Identities=22% Similarity=0.354 Sum_probs=20.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHh
Q 016911 243 KGILLFGPPGTGKTMLAKAVATE 265 (380)
Q Consensus 243 ~~vLL~GppGtGKT~la~ala~~ 265 (380)
..+++.|++|+|||+|+.++...
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46999999999999999999853
No 445
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=92.29 E-value=0.08 Score=44.00 Aligned_cols=22 Identities=41% Similarity=0.748 Sum_probs=19.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHH
Q 016911 243 KGILLFGPPGTGKTMLAKAVAT 264 (380)
Q Consensus 243 ~~vLL~GppGtGKT~la~ala~ 264 (380)
..+++.|++|+|||+|++.+.+
T Consensus 3 ~ki~~vG~~~~GKSsli~~l~~ 24 (166)
T 3q72_A 3 YKVLLLGAPGVGKSALARIFGG 24 (166)
T ss_dssp CEEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEEECCCCCCHHHHHHHHcC
Confidence 4689999999999999999864
No 446
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=92.28 E-value=0.16 Score=44.99 Aligned_cols=25 Identities=24% Similarity=0.384 Sum_probs=21.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhc
Q 016911 242 WKGILLFGPPGTGKTMLAKAVATEC 266 (380)
Q Consensus 242 ~~~vLL~GppGtGKT~la~ala~~l 266 (380)
...+++.|++|+||||++..++...
T Consensus 38 ~~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 38 VVAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHh
Confidence 3578899999999999999998765
No 447
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=92.24 E-value=0.071 Score=53.60 Aligned_cols=27 Identities=30% Similarity=0.285 Sum_probs=22.4
Q ss_pred CCCce--EEEEcCCCCcHHHHHHHHHHhc
Q 016911 240 SPWKG--ILLFGPPGTGKTMLAKAVATEC 266 (380)
Q Consensus 240 ~~~~~--vLL~GppGtGKT~la~ala~~l 266 (380)
.++.. +.|.||+|+|||||+++|++..
T Consensus 38 ~~Gei~~vaLvG~nGaGKSTLln~L~G~~ 66 (427)
T 2qag_B 38 SQGFCFNILCVGETGLGKSTLMDTLFNTK 66 (427)
T ss_dssp C-CCEEEEEEECSTTSSSHHHHHHHHTSC
T ss_pred cCCCeeEEEEECCCCCCHHHHHHHHhCcc
Confidence 45555 8999999999999999998763
No 448
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=92.22 E-value=0.087 Score=44.69 Aligned_cols=24 Identities=21% Similarity=0.412 Sum_probs=21.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhc
Q 016911 243 KGILLFGPPGTGKTMLAKAVATEC 266 (380)
Q Consensus 243 ~~vLL~GppGtGKT~la~ala~~l 266 (380)
..+++.|++|+|||+|+.++....
T Consensus 5 ~ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 5 YKLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEEECCCCCCHHHHHHHHHhCC
Confidence 579999999999999999998643
No 449
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=92.19 E-value=0.6 Score=44.39 Aligned_cols=18 Identities=33% Similarity=0.279 Sum_probs=15.5
Q ss_pred CceEEEEcCCCCcHHHHH
Q 016911 242 WKGILLFGPPGTGKTMLA 259 (380)
Q Consensus 242 ~~~vLL~GppGtGKT~la 259 (380)
+..+++.+|+|+|||..+
T Consensus 58 ~~~~lv~~~TGsGKT~~~ 75 (394)
T 1fuu_A 58 GHDVLAQAQSGTGKTGTF 75 (394)
T ss_dssp TCCEEECCCSSHHHHHHH
T ss_pred CCCEEEECCCCChHHHHH
Confidence 367999999999999874
No 450
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=92.19 E-value=0.071 Score=55.34 Aligned_cols=28 Identities=25% Similarity=0.393 Sum_probs=25.4
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHhc
Q 016911 239 LSPWKGILLFGPPGTGKTMLAKAVATEC 266 (380)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~la~ala~~l 266 (380)
++++..+.|.||+|+|||||++.+++.+
T Consensus 366 i~~G~~~~ivG~sGsGKSTll~~l~g~~ 393 (582)
T 3b5x_A 366 IPQGKTVALVGRSGSGKSTIANLFTRFY 393 (582)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 5777889999999999999999999866
No 451
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=92.18 E-value=0.089 Score=45.05 Aligned_cols=24 Identities=21% Similarity=0.400 Sum_probs=21.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhc
Q 016911 243 KGILLFGPPGTGKTMLAKAVATEC 266 (380)
Q Consensus 243 ~~vLL~GppGtGKT~la~ala~~l 266 (380)
..+++.|++|+|||+|+..++...
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSS
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 479999999999999999998643
No 452
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=92.16 E-value=0.45 Score=47.60 Aligned_cols=22 Identities=23% Similarity=0.462 Sum_probs=19.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHH
Q 016911 243 KGILLFGPPGTGKTMLAKAVAT 264 (380)
Q Consensus 243 ~~vLL~GppGtGKT~la~ala~ 264 (380)
..++|.|.||+|||||...+.+
T Consensus 24 ~~V~lvG~~nvGKSTL~n~l~~ 45 (456)
T 4dcu_A 24 PVVAIVGRPNVGKSTIFNRIAG 45 (456)
T ss_dssp CEEEEECSSSSSHHHHHHHHEE
T ss_pred CEEEEECCCCCcHHHHHHHHhC
Confidence 4699999999999999999965
No 453
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=92.15 E-value=0.61 Score=45.03 Aligned_cols=33 Identities=24% Similarity=0.375 Sum_probs=25.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhc----CCeEEEEecc
Q 016911 244 GILLFGPPGTGKTMLAKAVATEC----KTTFFNISAS 276 (380)
Q Consensus 244 ~vLL~GppGtGKT~la~ala~~l----~~~~v~v~~s 276 (380)
++++..|+|+|||..+-+++... +...+.+-+.
T Consensus 25 ~~ll~~~tG~GKT~~~~~~~~~~~~~~~~~~liv~P~ 61 (494)
T 1wp9_A 25 NCLIVLPTGLGKTLIAMMIAEYRLTKYGGKVLMLAPT 61 (494)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHHHHSCSCEEEECSS
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHhcCCCeEEEEECC
Confidence 89999999999999888776554 4555555543
No 454
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=92.14 E-value=0.092 Score=44.55 Aligned_cols=24 Identities=21% Similarity=0.315 Sum_probs=21.3
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHh
Q 016911 242 WKGILLFGPPGTGKTMLAKAVATE 265 (380)
Q Consensus 242 ~~~vLL~GppGtGKT~la~ala~~ 265 (380)
...+++.|++|+|||+|+.++...
T Consensus 18 ~~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 18 TYKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 357899999999999999999864
No 455
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=92.09 E-value=0.092 Score=45.16 Aligned_cols=23 Identities=30% Similarity=0.471 Sum_probs=20.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHh
Q 016911 243 KGILLFGPPGTGKTMLAKAVATE 265 (380)
Q Consensus 243 ~~vLL~GppGtGKT~la~ala~~ 265 (380)
..+++.|++|+|||+|+..+...
T Consensus 26 ~ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 26 FKVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 57999999999999999999863
No 456
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=92.08 E-value=1.1 Score=44.84 Aligned_cols=23 Identities=30% Similarity=0.616 Sum_probs=18.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHh
Q 016911 243 KGILLFGPPGTGKTMLAKAVATE 265 (380)
Q Consensus 243 ~~vLL~GppGtGKT~la~ala~~ 265 (380)
.++++.+|+|+|||..+-..+..
T Consensus 23 ~~~l~~~~tGsGKT~~~~~~~~~ 45 (556)
T 4a2p_A 23 KNALICAPTGSGKTFVSILICEH 45 (556)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CCEEEEcCCCChHHHHHHHHHHH
Confidence 57999999999999887655533
No 457
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=92.08 E-value=0.37 Score=50.91 Aligned_cols=19 Identities=37% Similarity=0.489 Sum_probs=17.1
Q ss_pred CCceEEEEcCCCCcHHHHH
Q 016911 241 PWKGILLFGPPGTGKTMLA 259 (380)
Q Consensus 241 ~~~~vLL~GppGtGKT~la 259 (380)
.+.++++.||+|+|||+++
T Consensus 38 ~~~~~lv~apTGsGKT~~~ 56 (720)
T 2zj8_A 38 EGKNALISIPTASGKTLIA 56 (720)
T ss_dssp GTCEEEEECCGGGCHHHHH
T ss_pred CCCcEEEEcCCccHHHHHH
Confidence 3578999999999999987
No 458
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=92.08 E-value=0.33 Score=48.27 Aligned_cols=18 Identities=33% Similarity=0.255 Sum_probs=16.0
Q ss_pred CceEEEEcCCCCcHHHHH
Q 016911 242 WKGILLFGPPGTGKTMLA 259 (380)
Q Consensus 242 ~~~vLL~GppGtGKT~la 259 (380)
++.+++.||+|+|||.++
T Consensus 2 g~~~lv~a~TGsGKT~~~ 19 (431)
T 2v6i_A 2 RELTVLDLHPGAGKTRRV 19 (431)
T ss_dssp CCEEEEECCTTSCTTTTH
T ss_pred CCEEEEEcCCCCCHHHHH
Confidence 468999999999999975
No 459
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=92.05 E-value=0.094 Score=44.23 Aligned_cols=23 Identities=26% Similarity=0.504 Sum_probs=20.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHh
Q 016911 243 KGILLFGPPGTGKTMLAKAVATE 265 (380)
Q Consensus 243 ~~vLL~GppGtGKT~la~ala~~ 265 (380)
..+++.|++|+|||+|+.++...
T Consensus 13 ~ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 13 AKLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 57999999999999999999764
No 460
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=92.04 E-value=0.085 Score=44.32 Aligned_cols=22 Identities=32% Similarity=0.480 Sum_probs=20.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHH
Q 016911 243 KGILLFGPPGTGKTMLAKAVAT 264 (380)
Q Consensus 243 ~~vLL~GppGtGKT~la~ala~ 264 (380)
..+++.|++|+|||+|+.++..
T Consensus 10 ~~i~v~G~~~~GKssl~~~l~~ 31 (181)
T 3tw8_B 10 FKLLIIGDSGVGKSSLLLRFAD 31 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHCS
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 5799999999999999999965
No 461
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=92.03 E-value=0.52 Score=45.26 Aligned_cols=19 Identities=26% Similarity=0.239 Sum_probs=16.0
Q ss_pred CceEEEEcCCCCcHHHHHH
Q 016911 242 WKGILLFGPPGTGKTMLAK 260 (380)
Q Consensus 242 ~~~vLL~GppGtGKT~la~ 260 (380)
++.+++.+|+|+|||..+-
T Consensus 77 ~~~~lv~a~TGsGKT~~~~ 95 (414)
T 3eiq_A 77 GYDVIAQAQSGTGKTATFA 95 (414)
T ss_dssp TCCEEECCCSCSSSHHHHH
T ss_pred CCCEEEECCCCCcccHHHH
Confidence 3579999999999998743
No 462
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=92.02 E-value=0.092 Score=44.79 Aligned_cols=23 Identities=22% Similarity=0.362 Sum_probs=20.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHh
Q 016911 243 KGILLFGPPGTGKTMLAKAVATE 265 (380)
Q Consensus 243 ~~vLL~GppGtGKT~la~ala~~ 265 (380)
..+++.|++|+|||+|+.++...
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 24 GEVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 57999999999999999999765
No 463
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=92.00 E-value=0.089 Score=45.61 Aligned_cols=23 Identities=26% Similarity=0.417 Sum_probs=20.6
Q ss_pred CceEEEEcCCCCcHHHHHHHHHH
Q 016911 242 WKGILLFGPPGTGKTMLAKAVAT 264 (380)
Q Consensus 242 ~~~vLL~GppGtGKT~la~ala~ 264 (380)
...+++.|++|+|||+|...+..
T Consensus 23 ~~ki~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 23 HGKLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp -CEEEEEESTTSSHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhc
Confidence 35799999999999999999987
No 464
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=92.00 E-value=0.085 Score=45.17 Aligned_cols=24 Identities=29% Similarity=0.356 Sum_probs=21.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHh
Q 016911 242 WKGILLFGPPGTGKTMLAKAVATE 265 (380)
Q Consensus 242 ~~~vLL~GppGtGKT~la~ala~~ 265 (380)
...+++.|++|+|||+|+..+...
T Consensus 7 ~~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 7 KCKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEEECCCCCCHHHHHHHHhcC
Confidence 357899999999999999999864
No 465
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=91.97 E-value=0.09 Score=44.67 Aligned_cols=23 Identities=30% Similarity=0.472 Sum_probs=20.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHh
Q 016911 243 KGILLFGPPGTGKTMLAKAVATE 265 (380)
Q Consensus 243 ~~vLL~GppGtGKT~la~ala~~ 265 (380)
..+++.|++|+|||+|+..+...
T Consensus 11 ~ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 11 FKFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 57999999999999999999764
No 466
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=91.96 E-value=0.081 Score=51.94 Aligned_cols=26 Identities=23% Similarity=0.249 Sum_probs=22.8
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhcC
Q 016911 242 WKGILLFGPPGTGKTMLAKAVATECK 267 (380)
Q Consensus 242 ~~~vLL~GppGtGKT~la~ala~~l~ 267 (380)
+..+.|.||+|+|||||+++|+....
T Consensus 215 G~~~~lvG~sG~GKSTLln~L~g~~~ 240 (358)
T 2rcn_A 215 GRISIFAGQSGVGKSSLLNALLGLQN 240 (358)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHCCSS
T ss_pred CCEEEEECCCCccHHHHHHHHhcccc
Confidence 45789999999999999999997654
No 467
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=91.95 E-value=0.099 Score=44.04 Aligned_cols=24 Identities=29% Similarity=0.358 Sum_probs=21.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHh
Q 016911 242 WKGILLFGPPGTGKTMLAKAVATE 265 (380)
Q Consensus 242 ~~~vLL~GppGtGKT~la~ala~~ 265 (380)
...+++.|++|+|||+|+.++...
T Consensus 10 ~~~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 10 AFKVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHHhC
Confidence 357999999999999999999763
No 468
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=91.93 E-value=0.11 Score=43.79 Aligned_cols=24 Identities=21% Similarity=0.277 Sum_probs=21.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHh
Q 016911 242 WKGILLFGPPGTGKTMLAKAVATE 265 (380)
Q Consensus 242 ~~~vLL~GppGtGKT~la~ala~~ 265 (380)
...+++.|++|+|||+|...+...
T Consensus 8 ~~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 8 FIKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 357999999999999999999754
No 469
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=91.93 E-value=0.084 Score=45.05 Aligned_cols=25 Identities=28% Similarity=0.352 Sum_probs=21.9
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHh
Q 016911 241 PWKGILLFGPPGTGKTMLAKAVATE 265 (380)
Q Consensus 241 ~~~~vLL~GppGtGKT~la~ala~~ 265 (380)
+...+++.|++|+|||+|...+...
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~~ 41 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNGE 41 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTC
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcC
Confidence 4568999999999999999999753
No 470
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=91.93 E-value=0.11 Score=45.03 Aligned_cols=25 Identities=28% Similarity=0.431 Sum_probs=21.8
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHh
Q 016911 241 PWKGILLFGPPGTGKTMLAKAVATE 265 (380)
Q Consensus 241 ~~~~vLL~GppGtGKT~la~ala~~ 265 (380)
+...+++.|++|+|||+|+..+...
T Consensus 27 ~~~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 27 AEVKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 3467999999999999999999864
No 471
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=91.91 E-value=1.6 Score=44.11 Aligned_cols=24 Identities=21% Similarity=0.234 Sum_probs=18.4
Q ss_pred CceEEEEcCCCCcHHHHHH-HHHHh
Q 016911 242 WKGILLFGPPGTGKTMLAK-AVATE 265 (380)
Q Consensus 242 ~~~vLL~GppGtGKT~la~-ala~~ 265 (380)
.+.+++.+|+|+|||..+- .+...
T Consensus 158 ~~~~ll~apTGsGKT~~~~~~il~~ 182 (508)
T 3fho_A 158 PRNMIGQSQSGTGKTAAFALTMLSR 182 (508)
T ss_dssp CCCEEEECCSSTTSHHHHHHHHHHH
T ss_pred CCCEEEECCCCccHHHHHHHHHHHH
Confidence 4789999999999998743 33433
No 472
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=91.90 E-value=0.067 Score=55.53 Aligned_cols=28 Identities=25% Similarity=0.426 Sum_probs=25.5
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHhc
Q 016911 239 LSPWKGILLFGPPGTGKTMLAKAVATEC 266 (380)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~la~ala~~l 266 (380)
++++..+.|.||+|+|||||++.+++.+
T Consensus 366 i~~G~~~~ivG~sGsGKSTLl~~l~g~~ 393 (582)
T 3b60_A 366 IPAGKTVALVGRSGSGKSTIASLITRFY 393 (582)
T ss_dssp ECTTCEEEEEECTTSSHHHHHHHHTTTT
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhhcc
Confidence 5777889999999999999999999876
No 473
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=91.87 E-value=0.1 Score=44.12 Aligned_cols=23 Identities=26% Similarity=0.296 Sum_probs=20.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHh
Q 016911 243 KGILLFGPPGTGKTMLAKAVATE 265 (380)
Q Consensus 243 ~~vLL~GppGtGKT~la~ala~~ 265 (380)
..+++.|++|+|||+|+..+...
T Consensus 6 ~~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 6 IKCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 46899999999999999999753
No 474
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=91.87 E-value=0.079 Score=45.10 Aligned_cols=22 Identities=23% Similarity=0.389 Sum_probs=19.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHHh
Q 016911 244 GILLFGPPGTGKTMLAKAVATE 265 (380)
Q Consensus 244 ~vLL~GppGtGKT~la~ala~~ 265 (380)
.+++.|++|+|||+|+..+.+.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 5899999999999999999864
No 475
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=91.83 E-value=0.14 Score=55.33 Aligned_cols=24 Identities=38% Similarity=0.589 Sum_probs=19.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhc
Q 016911 243 KGILLFGPPGTGKTMLAKAVATEC 266 (380)
Q Consensus 243 ~~vLL~GppGtGKT~la~ala~~l 266 (380)
..+++.||||||||+++..++..+
T Consensus 372 ~~~lI~GppGTGKT~ti~~~i~~l 395 (800)
T 2wjy_A 372 PLSLIQGPPGTGKTVTSATIVYHL 395 (800)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHH
Confidence 467899999999999887776543
No 476
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=91.80 E-value=0.098 Score=45.35 Aligned_cols=25 Identities=24% Similarity=0.433 Sum_probs=21.7
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhc
Q 016911 242 WKGILLFGPPGTGKTMLAKAVATEC 266 (380)
Q Consensus 242 ~~~vLL~GppGtGKT~la~ala~~l 266 (380)
...+++.|++|+|||+|+.++...-
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 8 LLKVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCC
Confidence 3679999999999999999997643
No 477
>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2
Probab=91.78 E-value=0.084 Score=50.90 Aligned_cols=25 Identities=32% Similarity=0.353 Sum_probs=22.2
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHH
Q 016911 240 SPWKGILLFGPPGTGKTMLAKAVAT 264 (380)
Q Consensus 240 ~~~~~vLL~GppGtGKT~la~ala~ 264 (380)
-.+.++||.|++|+|||++|..+..
T Consensus 145 ~~g~gvli~G~sG~GKStlal~l~~ 169 (312)
T 1knx_A 145 VFGVGVLLTGRSGIGKSECALDLIN 169 (312)
T ss_dssp ETTEEEEEEESSSSSHHHHHHHHHT
T ss_pred ECCEEEEEEcCCCCCHHHHHHHHHH
Confidence 4568999999999999999999865
No 478
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=91.76 E-value=0.08 Score=50.23 Aligned_cols=26 Identities=31% Similarity=0.298 Sum_probs=22.5
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhcC
Q 016911 242 WKGILLFGPPGTGKTMLAKAVATECK 267 (380)
Q Consensus 242 ~~~vLL~GppGtGKT~la~ala~~l~ 267 (380)
+..+.|.||+|+|||||+++++....
T Consensus 169 geiv~l~G~sG~GKSTll~~l~g~~~ 194 (301)
T 1u0l_A 169 GKISTMAGLSGVGKSSLLNAINPGLK 194 (301)
T ss_dssp SSEEEEECSTTSSHHHHHHHHSTTCC
T ss_pred CCeEEEECCCCCcHHHHHHHhccccc
Confidence 35688999999999999999998663
No 479
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=91.71 E-value=0.1 Score=50.62 Aligned_cols=26 Identities=27% Similarity=0.345 Sum_probs=22.4
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHhc
Q 016911 241 PWKGILLFGPPGTGKTMLAKAVATEC 266 (380)
Q Consensus 241 ~~~~vLL~GppGtGKT~la~ala~~l 266 (380)
....+.|.|+||+|||||..+++..+
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~~~ 98 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGKML 98 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 34678899999999999999999754
No 480
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=91.67 E-value=0.11 Score=44.89 Aligned_cols=24 Identities=21% Similarity=0.455 Sum_probs=21.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHh
Q 016911 242 WKGILLFGPPGTGKTMLAKAVATE 265 (380)
Q Consensus 242 ~~~vLL~GppGtGKT~la~ala~~ 265 (380)
...+++.|++|+|||+|+.++...
T Consensus 14 ~~ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 14 LHKVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHhC
Confidence 357999999999999999999754
No 481
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=91.67 E-value=0.19 Score=45.52 Aligned_cols=34 Identities=18% Similarity=0.237 Sum_probs=26.2
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHhc--CCeEEEEe
Q 016911 241 PWKGILLFGPPGTGKTMLAKAVATEC--KTTFFNIS 274 (380)
Q Consensus 241 ~~~~vLL~GppGtGKT~la~ala~~l--~~~~v~v~ 274 (380)
....+++.|.+|+||||++..++..+ +..+..++
T Consensus 13 ~~~i~~~~GkgGvGKTTl~~~La~~l~~g~~v~vvd 48 (262)
T 1yrb_A 13 ASMIVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVN 48 (262)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHTTTSCEEEEE
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEEe
Confidence 34568899999999999999998665 44555554
No 482
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=91.65 E-value=0.27 Score=45.46 Aligned_cols=34 Identities=15% Similarity=0.099 Sum_probs=23.6
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHhc---CCeEEEEe
Q 016911 241 PWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNIS 274 (380)
Q Consensus 241 ~~~~vLL~GppGtGKT~la~ala~~l---~~~~v~v~ 274 (380)
.+.-.+++|+.|+||||.+...+... +..++.+.
T Consensus 18 ~g~l~v~~G~MgsGKTT~lL~~~~r~~~~g~kvli~k 54 (234)
T 2orv_A 18 RGQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIK 54 (234)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEe
Confidence 34567889999999998776665444 55555554
No 483
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=91.64 E-value=0.11 Score=44.49 Aligned_cols=24 Identities=33% Similarity=0.494 Sum_probs=21.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhc
Q 016911 243 KGILLFGPPGTGKTMLAKAVATEC 266 (380)
Q Consensus 243 ~~vLL~GppGtGKT~la~ala~~l 266 (380)
..+++.|++|+|||+|+.++....
T Consensus 17 ~ki~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 17 FKLLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 579999999999999999998643
No 484
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=91.63 E-value=0.075 Score=45.06 Aligned_cols=24 Identities=29% Similarity=0.379 Sum_probs=21.0
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHH
Q 016911 241 PWKGILLFGPPGTGKTMLAKAVAT 264 (380)
Q Consensus 241 ~~~~vLL~GppGtGKT~la~ala~ 264 (380)
....+++.|++|+|||+|...+..
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CccEEEEECCCCCCHHHHHHHHhc
Confidence 456899999999999999999863
No 485
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=91.63 E-value=0.12 Score=44.43 Aligned_cols=23 Identities=26% Similarity=0.420 Sum_probs=20.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHHH
Q 016911 242 WKGILLFGPPGTGKTMLAKAVAT 264 (380)
Q Consensus 242 ~~~vLL~GppGtGKT~la~ala~ 264 (380)
...+++.|++|+|||+|+.++..
T Consensus 8 ~~ki~vvG~~~~GKSsli~~l~~ 30 (199)
T 2gf0_A 8 DYRVVVFGAGGVGKSSLVLRFVK 30 (199)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHH
T ss_pred eeEEEEECCCCCcHHHHHHHHHc
Confidence 46799999999999999999986
No 486
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=91.62 E-value=0.11 Score=44.54 Aligned_cols=24 Identities=29% Similarity=0.360 Sum_probs=21.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhc
Q 016911 243 KGILLFGPPGTGKTMLAKAVATEC 266 (380)
Q Consensus 243 ~~vLL~GppGtGKT~la~ala~~l 266 (380)
..+++.|++|+|||+|+.++...-
T Consensus 23 ~ki~vvG~~~~GKSsli~~l~~~~ 46 (189)
T 2gf9_A 23 FKLLLIGNSSVGKTSFLFRYADDS 46 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 579999999999999999997643
No 487
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=91.53 E-value=0.12 Score=44.91 Aligned_cols=25 Identities=20% Similarity=0.252 Sum_probs=21.3
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHh
Q 016911 241 PWKGILLFGPPGTGKTMLAKAVATE 265 (380)
Q Consensus 241 ~~~~vLL~GppGtGKT~la~ala~~ 265 (380)
....+++.|++|+|||+|+..+...
T Consensus 27 ~~~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 27 KAYKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp -CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhC
Confidence 3467999999999999999999754
No 488
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=91.46 E-value=0.11 Score=44.38 Aligned_cols=24 Identities=17% Similarity=0.279 Sum_probs=21.5
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHH
Q 016911 241 PWKGILLFGPPGTGKTMLAKAVAT 264 (380)
Q Consensus 241 ~~~~vLL~GppGtGKT~la~ala~ 264 (380)
....+++.|++|+|||+|...+..
T Consensus 15 ~~~~i~v~G~~~~GKssl~~~l~~ 38 (187)
T 1zj6_A 15 QEHKVIIVGLDNAGKTTILYQFSM 38 (187)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHHT
T ss_pred CccEEEEECCCCCCHHHHHHHHhc
Confidence 446899999999999999999984
No 489
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=91.46 E-value=0.89 Score=47.34 Aligned_cols=23 Identities=26% Similarity=0.509 Sum_probs=19.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHHH
Q 016911 242 WKGILLFGPPGTGKTMLAKAVAT 264 (380)
Q Consensus 242 ~~~vLL~GppGtGKT~la~ala~ 264 (380)
++++++.+|+|+|||..+...+.
T Consensus 28 g~~~iv~~~TGsGKTl~~~~~i~ 50 (696)
T 2ykg_A 28 GKNTIICAPTGCGKTFVSLLICE 50 (696)
T ss_dssp TCCEEEECCTTSSHHHHHHHHHH
T ss_pred CCCEEEEcCCCchHHHHHHHHHH
Confidence 36899999999999997766654
No 490
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=91.45 E-value=0.1 Score=44.96 Aligned_cols=25 Identities=24% Similarity=0.283 Sum_probs=21.5
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHh
Q 016911 241 PWKGILLFGPPGTGKTMLAKAVATE 265 (380)
Q Consensus 241 ~~~~vLL~GppGtGKT~la~ala~~ 265 (380)
....+++.|++|+|||+|+..+...
T Consensus 21 ~~~ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 21 EEMELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CccEEEEECCCCCCHHHHHHHHHcC
Confidence 3457999999999999999999853
No 491
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=91.45 E-value=0.11 Score=44.48 Aligned_cols=23 Identities=26% Similarity=0.372 Sum_probs=20.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHh
Q 016911 243 KGILLFGPPGTGKTMLAKAVATE 265 (380)
Q Consensus 243 ~~vLL~GppGtGKT~la~ala~~ 265 (380)
..+++.|++|+|||+|+..+...
T Consensus 21 ~ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 21 FKIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 57999999999999999999753
No 492
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=91.42 E-value=0.12 Score=44.11 Aligned_cols=23 Identities=30% Similarity=0.510 Sum_probs=20.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHh
Q 016911 243 KGILLFGPPGTGKTMLAKAVATE 265 (380)
Q Consensus 243 ~~vLL~GppGtGKT~la~ala~~ 265 (380)
..+++.|++|+|||+|+.++...
T Consensus 16 ~~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 16 LKILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 57999999999999999999764
No 493
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=91.37 E-value=0.12 Score=52.86 Aligned_cols=27 Identities=22% Similarity=0.214 Sum_probs=24.1
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHhc
Q 016911 239 LSPWKGILLFGPPGTGKTMLAKAVATEC 266 (380)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~la~ala~~l 266 (380)
+.+ ..+.|.||+|+|||||+++++..+
T Consensus 27 i~~-e~~~liG~nGsGKSTLl~~l~Gl~ 53 (483)
T 3euj_A 27 FDE-LVTTLSGGNGAGKSTTMAGFVTAL 53 (483)
T ss_dssp CCS-SEEEEECCTTSSHHHHHHHHHHHH
T ss_pred Ecc-ceEEEECCCCCcHHHHHHHHhcCC
Confidence 456 788999999999999999999876
No 494
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=91.37 E-value=0.11 Score=44.98 Aligned_cols=23 Identities=30% Similarity=0.374 Sum_probs=20.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHh
Q 016911 243 KGILLFGPPGTGKTMLAKAVATE 265 (380)
Q Consensus 243 ~~vLL~GppGtGKT~la~ala~~ 265 (380)
..+++.|++|+|||+|+..+...
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~ 31 (203)
T 1zbd_A 9 FKILIIGNSSVGKTSFLFRYADD 31 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 57999999999999999999764
No 495
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=91.33 E-value=0.15 Score=50.91 Aligned_cols=24 Identities=17% Similarity=0.299 Sum_probs=21.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHh
Q 016911 242 WKGILLFGPPGTGKTMLAKAVATE 265 (380)
Q Consensus 242 ~~~vLL~GppGtGKT~la~ala~~ 265 (380)
...+.|.||+|+|||||.+++++.
T Consensus 69 ~~~valvG~nGaGKSTLln~L~Gl 92 (413)
T 1tq4_A 69 VLNVAVTGETGSGKSSFINTLRGI 92 (413)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTC
T ss_pred CeEEEEECCCCCcHHHHHHHHhCC
Confidence 357889999999999999999984
No 496
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=91.30 E-value=0.89 Score=43.47 Aligned_cols=18 Identities=28% Similarity=0.307 Sum_probs=16.1
Q ss_pred CceEEEEcCCCCcHHHHH
Q 016911 242 WKGILLFGPPGTGKTMLA 259 (380)
Q Consensus 242 ~~~vLL~GppGtGKT~la 259 (380)
+..+++.+|+|+|||..+
T Consensus 64 ~~~~lv~apTGsGKT~~~ 81 (412)
T 3fht_A 64 PQNLIAQSQSGTGKTAAF 81 (412)
T ss_dssp CCCEEEECCTTSCHHHHH
T ss_pred CCeEEEECCCCchHHHHH
Confidence 478999999999999875
No 497
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=91.28 E-value=0.12 Score=49.08 Aligned_cols=24 Identities=25% Similarity=0.313 Sum_probs=21.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhc
Q 016911 242 WKGILLFGPPGTGKTMLAKAVATEC 266 (380)
Q Consensus 242 ~~~vLL~GppGtGKT~la~ala~~l 266 (380)
+..+.|.||+|+|||||+++++ ..
T Consensus 165 G~i~~l~G~sG~GKSTLln~l~-~~ 188 (302)
T 2yv5_A 165 GFICILAGPSGVGKSSILSRLT-GE 188 (302)
T ss_dssp TCEEEEECSTTSSHHHHHHHHH-SC
T ss_pred CcEEEEECCCCCCHHHHHHHHH-Hh
Confidence 3578899999999999999999 65
No 498
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=91.28 E-value=0.12 Score=43.78 Aligned_cols=22 Identities=23% Similarity=0.372 Sum_probs=20.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHH
Q 016911 243 KGILLFGPPGTGKTMLAKAVAT 264 (380)
Q Consensus 243 ~~vLL~GppGtGKT~la~ala~ 264 (380)
..+++.|++|+|||+|+..+..
T Consensus 7 ~ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 7 RKIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEECcCCCCHHHHHHHHHc
Confidence 5799999999999999999984
No 499
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=91.28 E-value=0.13 Score=44.75 Aligned_cols=25 Identities=32% Similarity=0.477 Sum_probs=21.2
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHh
Q 016911 241 PWKGILLFGPPGTGKTMLAKAVATE 265 (380)
Q Consensus 241 ~~~~vLL~GppGtGKT~la~ala~~ 265 (380)
....+++.|++|+|||+|+.++...
T Consensus 19 ~~~~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 19 SIMKILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHC
T ss_pred cceEEEEECCCCCCHHHHHHHHHhC
Confidence 3467999999999999999999853
No 500
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=91.27 E-value=0.12 Score=44.72 Aligned_cols=23 Identities=22% Similarity=0.426 Sum_probs=20.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHh
Q 016911 243 KGILLFGPPGTGKTMLAKAVATE 265 (380)
Q Consensus 243 ~~vLL~GppGtGKT~la~ala~~ 265 (380)
..+++.|++|+|||+|+..+...
T Consensus 24 ~ki~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 24 LKVCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 57999999999999999999764
Done!