Query 016914
Match_columns 380
No_of_seqs 219 out of 1594
Neff 8.0
Searched_HMMs 46136
Date Fri Mar 29 03:56:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016914.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016914hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03145 Protein phosphatase 2 100.0 8.3E-73 1.8E-77 549.9 36.6 357 11-380 9-365 (365)
2 KOG0697 Protein phosphatase 1B 100.0 2.1E-51 4.5E-56 369.2 22.5 269 79-354 21-300 (379)
3 KOG0698 Serine/threonine prote 100.0 7.2E-48 1.6E-52 372.9 28.6 264 78-353 37-312 (330)
4 PTZ00224 protein phosphatase 2 100.0 3.1E-47 6.6E-52 371.9 29.8 253 77-349 19-275 (381)
5 PF00481 PP2C: Protein phospha 100.0 2.9E-47 6.2E-52 356.8 14.8 249 81-337 1-254 (254)
6 KOG0699 Serine/threonine prote 100.0 1.4E-44 3.1E-49 335.3 18.5 167 180-346 329-504 (542)
7 COG0631 PTC1 Serine/threonine 100.0 1.8E-43 3.9E-48 331.7 20.6 243 77-348 5-255 (262)
8 cd00143 PP2Cc Serine/threonine 100.0 7.4E-38 1.6E-42 291.2 28.3 245 82-344 3-254 (254)
9 PRK14559 putative protein seri 100.0 2.8E-38 6E-43 325.0 26.3 253 79-348 374-638 (645)
10 smart00332 PP2Cc Serine/threon 100.0 3.9E-37 8.4E-42 287.1 28.2 244 80-342 6-255 (255)
11 KOG0700 Protein phosphatase 2C 100.0 4.4E-38 9.6E-43 299.1 19.9 218 115-332 96-378 (390)
12 KOG1323 Serine/threonine phosp 100.0 4.7E-28 1E-32 223.4 21.4 263 83-348 108-490 (493)
13 KOG1379 Serine/threonine prote 99.9 1.9E-22 4.1E-27 186.5 20.6 207 92-343 89-329 (330)
14 KOG0618 Serine/threonine phosp 99.9 4.6E-23 9.9E-28 212.5 15.1 242 80-346 522-773 (1081)
15 PF13672 PP2C_2: Protein phosp 99.8 1.9E-19 4E-24 163.8 13.4 181 85-311 3-195 (212)
16 smart00331 PP2C_SIG Sigma fact 99.7 8.6E-17 1.9E-21 144.1 18.3 175 92-329 15-192 (193)
17 TIGR02865 spore_II_E stage II 99.6 8.2E-15 1.8E-19 156.0 20.1 194 87-344 560-763 (764)
18 PF07228 SpoIIE: Stage II spor 99.5 1.5E-12 3.3E-17 116.2 18.0 178 116-345 2-193 (193)
19 COG2208 RsbU Serine phosphatas 98.5 1.6E-05 3.4E-10 78.6 19.4 185 93-345 161-366 (367)
20 PRK10693 response regulator of 65.0 42 0.00092 32.0 9.0 50 159-213 208-259 (303)
21 COG3700 AphA Acid phosphatase 51.3 28 0.00061 30.8 4.6 49 283-332 71-130 (237)
22 PHA02606 5.1 hypothetical prot 36.8 27 0.00058 30.1 2.2 26 5-30 124-149 (179)
23 cd00534 DHNA_DHNTPE Dihydroneo 35.2 1.6E+02 0.0034 23.7 6.5 60 289-350 42-103 (118)
24 COG1539 FolB Dihydroneopterin 31.3 2.2E+02 0.0048 23.3 6.8 61 289-351 43-105 (121)
25 KOG2675 Adenylate cyclase-asso 27.6 40 0.00086 33.8 2.0 9 182-190 379-387 (480)
26 PF06972 DUF1296: Protein of u 27.3 1E+02 0.0022 22.0 3.5 26 298-326 19-44 (60)
27 PF09436 DUF2016: Domain of un 26.2 40 0.00088 25.1 1.4 18 282-300 26-43 (72)
28 TIGR00525 folB dihydroneopteri 25.5 2.8E+02 0.0061 22.1 6.5 60 289-350 41-102 (116)
29 PF04155 Ground-like: Ground-l 24.3 2.4E+02 0.0053 20.7 5.4 42 299-342 7-48 (76)
30 PF12095 DUF3571: Protein of u 23.3 2.5E+02 0.0054 21.5 5.2 57 282-338 8-74 (83)
31 smart00331 PP2C_SIG Sigma fact 20.8 5.4E+02 0.012 22.0 9.3 63 282-344 27-94 (193)
32 PF06057 VirJ: Bacterial virul 20.4 4.2E+02 0.0091 23.7 6.9 63 284-346 2-79 (192)
33 PRK11593 folB bifunctional dih 20.2 4.4E+02 0.0095 21.2 6.6 59 289-350 42-102 (119)
No 1
>PLN03145 Protein phosphatase 2c; Provisional
Probab=100.00 E-value=8.3e-73 Score=549.94 Aligned_cols=357 Identities=83% Similarity=1.287 Sum_probs=322.5
Q ss_pred CCCCCCCCCCCCCCCCcccccccCCCccccCCCccceeccceeeeccccccccCcccccCCCCCCCCCceeeEEeccccC
Q 016914 11 ENGSSSRSGRPPNPPTAADRTGLTNDRVVVPRKKSLVRHASLVKTTTALDVSVEPVLGVGNHETEFVPVVRSGACADIGL 90 (380)
Q Consensus 11 ~~~~~~~~~~pp~~~~~~~r~~~~~~~~~~~~~~s~~r~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~G~ 90 (380)
+.|+||..++||+|+.++.| +.++.||.|.+.+.. .+.+.++.+.+++....|+|.++++++|++|.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~G~ 75 (365)
T PLN03145 9 GEGGSSGGGRPPNPSVAACC------------KPSLVRHSSLVKTPA-SDISVENELTFENMDTEFIPVVRSGAWADIGS 75 (365)
T ss_pred CCCCCcCCCCCCCCcccccc------------cchhhcchhhhhccc-cccccccccccccchhhccCceEEEEEccccC
Confidence 34444448999999999999 678999998877555 77888888888999999999999999999999
Q ss_pred CCCCCcceEEeccccccccCcCCCCCCceEEEEECCCCChhHHHHHHhhhhHHHhcCCCChHHHHHHHHHHHHHHhHHHH
Q 016914 91 RPTMEDVFLCVDNFMSDYGLKNLIDEPSAFYGMFDGHGGKHAADFASCHLPRFITEDEEFPQEIERVVASAFLQTDSAFA 170 (380)
Q Consensus 91 R~~nED~~~~~~~~~~~~~~~~~~~~~~~~~~V~DG~GG~~~a~~as~~l~~~l~~~~~~~~~~~~~l~~af~~~~~~l~ 170 (380)
|+.|||+|++..++....+..........||+|||||||+.++++|++++++.+.+...++..++++|.++|..+|++|.
T Consensus 76 R~~nED~~~~~~~~~~~~~~~~~~~~~~~lf~V~DGhGG~~age~as~~l~~~i~~~~~~~~~~~~al~~af~~~d~~~~ 155 (365)
T PLN03145 76 RSSMEDVYICVDNFMSDFGLKNSEDGPSAFYGVFDGHGGKHAADFACYHLPRFIVEDEDFPREIEKVVSSAFLQTDTAFA 155 (365)
T ss_pred CCCCCCceEecccccccccccccCCCCceEEEEEeCCCCHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHhHHHH
Confidence 99999999987766444444333445678999999999999999999999999988766777788899999999999998
Q ss_pred HHcccccccccCcceEEEEEeCCeEEEEecCCceEEEEeCCcceecCCCCCCCChHHHHHHHHcCCEEecccccCeeecc
Q 016914 171 EACSLDAALASGTTALAALVFGRRLVVANVGDCRAVLCRRGKAIEMSRDHKPVCSKEKKRIEASGGYVYDGYLNGQLNVA 250 (380)
Q Consensus 171 ~~~~~~~~~~~GtT~~~~~i~~~~l~vanvGDSRa~l~r~g~~~~lT~dH~~~~~~e~~Ri~~~gg~v~~~~~~g~l~~t 250 (380)
+.........+|||+++++|.++.+|+|||||||+|++++|++++||+||++.++.|++||+++||.+..++++|.+++|
T Consensus 156 ~~~~~~~~~~~GTTavv~li~~~~l~vaNvGDSRayl~r~g~~~~LT~DH~~~~~~E~~RI~~~Gg~v~~g~v~g~l~vT 235 (365)
T PLN03145 156 EACSLDASLASGTTALAALVVGRSLVVANAGDCRAVLCRRGKAIEMSRDHKPMCSKERKRIEASGGYVYDGYLNGQLNVA 235 (365)
T ss_pred hhhccccCCCCcCcEEEEEEECCeEEEEecCCceEEEEcCCeEEEecCCCCCCCHHHHHHHHHcCCceecceECCccccc
Confidence 86654444569999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCccccCCCCCCCCCccCcceEEEEcCCCCeEEEEEcCCccCCCChHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh
Q 016914 251 RALGDWHVEGMKGADGGPLSAEPELMSTKLTEEDEFLIIACDGVWDVFMSQNAVDFARRRLQEHNDPVMCSKDLVDEALK 330 (380)
Q Consensus 251 ralGd~~~k~~~~~~g~~~~~~p~i~~~~l~~~d~~LVL~SDGl~d~l~~~ei~~~i~~~l~~~~~~~~~a~~Lv~~A~~ 330 (380)
|+|||+.+|.++...+.++.++|++..++++++|.|||||||||||+|++++++++++..+.+..+|+++|+.|+++|++
T Consensus 236 RalGD~~~k~~k~~~~~~vs~ePdv~~~~l~~~D~fLILaSDGLwdvls~ee~v~~i~~~l~~~~~p~~aa~~Lv~~Al~ 315 (365)
T PLN03145 236 RALGDWHMEGMKGSDGGPLSAEPELMTTQLTEEDEFLIIGCDGIWDVFRSQNAVDFARRRLQEHNDPVMCSKELVDEALK 315 (365)
T ss_pred cccccccccccccccCCCcceEEEEEEEECCCCCEEEEEeCCccccCcCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh
Confidence 99999999887766666788999999999999999999999999999999999999988888778999999999999999
Q ss_pred CCCCCCeEEEEEEcCCCCCCCCCCCCcccccccChhhHHHHHHHhhhcCC
Q 016914 331 RKSGDNLAVVVVCFQSQPPPNLIAPRSRVQRSFSAEGLRELQSFLDSLGN 380 (380)
Q Consensus 331 ~g~~DNiTvivv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (380)
+++.||+|||||+|+..+||.+..+|++++|+|++|+|++||++||+++|
T Consensus 316 rgs~DNITvIVV~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (365)
T PLN03145 316 RKSGDNLAVVVVCFQSQPPPNLVAPRPRVQRSISAEGLRELQSFLDSLAN 365 (365)
T ss_pred CCCCCCEEEEEEEeecCCCccccccccccccccCHHHHHHHHHhhhccCC
Confidence 99999999999999999999999999999999999999999999999886
No 2
>KOG0697 consensus Protein phosphatase 1B (formerly 2C) [Signal transduction mechanisms]
Probab=100.00 E-value=2.1e-51 Score=369.17 Aligned_cols=269 Identities=36% Similarity=0.617 Sum_probs=241.9
Q ss_pred ceeeEEeccccCCCCCCcceEEeccccccccCcCCCCCCceEEEEECCCCChhHHHHHHhhhhHHHhcCCCChH------
Q 016914 79 VVRSGACADIGLRPTMEDVFLCVDNFMSDYGLKNLIDEPSAFYGMFDGHGGKHAADFASCHLPRFITEDEEFPQ------ 152 (380)
Q Consensus 79 ~~~~~~~s~~G~R~~nED~~~~~~~~~~~~~~~~~~~~~~~~~~V~DG~GG~~~a~~as~~l~~~l~~~~~~~~------ 152 (380)
.++||..|.+|||-.|||++.....+. ..-..|+||+|||||.|+..|.+++++|.+.|.+..+|..
T Consensus 21 glryg~SSMQGWR~eMEDah~A~~~l~-------~~l~dWSfFAVfDGHAGs~va~~c~~hLlehi~sse~F~~~~k~gs 93 (379)
T KOG0697|consen 21 GLRYGVSSMQGWRVEMEDAHTAVAGLP-------SPLEDWSFFAVFDGHAGSQVANHCAEHLLEHIISSEEFRGMTKNGS 93 (379)
T ss_pred ceeeeeccccchhhhhhhhhhhhhcCC-------CCccCceEEEEEcCccchHHHHHHHHHHHHHhhhhHHHhhhccCCc
Confidence 589999999999999999998765542 2346899999999999999999999999999987666654
Q ss_pred --HHHHHHHHHHHHHhHHHHHHccccc-ccccCcceEEEEEeCCeEEEEecCCceEEEEeCCcceecCCCCCCCChHHHH
Q 016914 153 --EIERVVASAFLQTDSAFAEACSLDA-ALASGTTALAALVFGRRLVVANVGDCRAVLCRRGKAIEMSRDHKPVCSKEKK 229 (380)
Q Consensus 153 --~~~~~l~~af~~~~~~l~~~~~~~~-~~~~GtT~~~~~i~~~~l~vanvGDSRa~l~r~g~~~~lT~dH~~~~~~e~~ 229 (380)
++++-|+..|+++|+.......... ..++|||++.+++....+|++|+||||++|+|+|+++.-|.||+|.++.|++
T Consensus 94 v~~~~~GIrtGFL~iDE~mr~~~~~~~~~drsGsTAVcv~vsp~h~y~~NcGDSRavl~rng~~~f~TqDHKP~~p~Eke 173 (379)
T KOG0697|consen 94 VENVEKGIRTGFLSIDEIMRTLSDISKGSDRSGSTAVCVFVSPTHIYIINCGDSRAVLCRNGEVVFSTQDHKPYLPKEKE 173 (379)
T ss_pred HHHHHhhHhhcceeHHHHHhhhhhhhcccccCCceEEEEEecCceEEEEecCcchhheecCCceEEeccCCCCCChHHHH
Confidence 7888899999999998877543322 2349999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCEEecccccCeeecccccCCCccccCCC--CCCCCCccCcceEEEEcCCCCeEEEEEcCCccCCCChHHHHHHH
Q 016914 230 RIEASGGYVYDGYLNGQLNVARALGDWHVEGMKG--ADGGPLSAEPELMSTKLTEEDEFLIIACDGVWDVFMSQNAVDFA 307 (380)
Q Consensus 230 Ri~~~gg~v~~~~~~g~l~~tralGd~~~k~~~~--~~g~~~~~~p~i~~~~l~~~d~~LVL~SDGl~d~l~~~ei~~~i 307 (380)
||+++||-|.--|+||.|+++|||||++||...+ ...+.++++|++..+.....|+||||+||||||+|+++|+.+++
T Consensus 174 RIqnAGGSVMIqRvNGsLAVSRAlGDydyK~v~~kgp~eQlVSPEPev~~~~R~eedeFivlACDGIwDVMtneelcefv 253 (379)
T KOG0697|consen 174 RIQNAGGSVMIQRVNGSLAVSRALGDYDYKNVPGKGPTEQLVSPEPEVYIIERSEEDEFIVLACDGIWDVMTNEELCEFV 253 (379)
T ss_pred HHhcCCCeEEEEEecceeeeehhccCcccccCCCCCchhcccCCCCceEEeeccccCcEEEEEccchhhhcccHHHHHHH
Confidence 9999999999999999999999999999998764 34567899999999999999999999999999999999999999
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHhCCCCCCeEEEEEEcCCCCCCCCCC
Q 016914 308 RRRLQEHNDPVMCSKDLVDEALKRKSGDNLAVVVVCFQSQPPPNLIA 354 (380)
Q Consensus 308 ~~~l~~~~~~~~~a~~Lv~~A~~~g~~DNiTvivv~~~~~~~~~~~~ 354 (380)
+..|.-..|...+|+.+++.++.+|+.||+|+|+|+|...|++.+..
T Consensus 254 ~sRl~Vt~dL~~vcn~VvDtCLhKGSRDNMsivlvcfp~APkv~~ea 300 (379)
T KOG0697|consen 254 KSRLEVTSDLEEVCNDVVDTCLHKGSRDNMSIVLVCFPGAPKVSIEA 300 (379)
T ss_pred HhhheecccHHHHHHHHHHHHHhccCccCceEEEEecCCCCCCCHHH
Confidence 99999899999999999999999999999999999998877765443
No 3
>KOG0698 consensus Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=100.00 E-value=7.2e-48 Score=372.86 Aligned_cols=264 Identities=43% Similarity=0.670 Sum_probs=227.5
Q ss_pred CceeeEE-eccccCCCCCCcceEEeccccccccCcCCCCC-CceEEEEECCCCChhHHHHHHhhhhHHHhcCCCChH---
Q 016914 78 PVVRSGA-CADIGLRPTMEDVFLCVDNFMSDYGLKNLIDE-PSAFYGMFDGHGGKHAADFASCHLPRFITEDEEFPQ--- 152 (380)
Q Consensus 78 ~~~~~~~-~s~~G~R~~nED~~~~~~~~~~~~~~~~~~~~-~~~~~~V~DG~GG~~~a~~as~~l~~~l~~~~~~~~--- 152 (380)
+.+..+. ++.+|.|..|||++.+...+... ..... ...||||||||||..+|+|+.++++..+.+...+..
T Consensus 37 ~~~~~~~~~~~~~~r~~med~~~~~~~~~~~----~~~~~~~~~ffgVfDGHGG~~~A~~~~~~L~~~l~~~~~~~~~~~ 112 (330)
T KOG0698|consen 37 ESYRLGSLLSIRGRRRKMEDRHVQLPDFLEE----DVGGEQDTAFFGVFDGHGGDLAAKFAAKHLHKNLLEQLAFPKDRQ 112 (330)
T ss_pred ccccceEEEecCCCCCccCcceeeccccccc----ccCCCCceEEEEEEeCCCCHHHHHHHHHHHHHHHHhhhhcccchH
Confidence 3445444 57788899999999987765311 11223 689999999999999999999999999988666555
Q ss_pred HHHHHHHHHHH-HHhHHHHHHcccccccccCcceEEEEEeCC-eEEEEecCCceEEEEeCC-cceecCCCCCCCChHHHH
Q 016914 153 EIERVVASAFL-QTDSAFAEACSLDAALASGTTALAALVFGR-RLVVANVGDCRAVLCRRG-KAIEMSRDHKPVCSKEKK 229 (380)
Q Consensus 153 ~~~~~l~~af~-~~~~~l~~~~~~~~~~~~GtT~~~~~i~~~-~l~vanvGDSRa~l~r~g-~~~~lT~dH~~~~~~e~~ 229 (380)
.++++++++|. ++|.++.+. .......|||++++++.++ .|||||+|||||+|++.| .+++||.||+|..+.|+.
T Consensus 113 ~~~~a~~~~F~~~~D~~~~~~--~~~~~~~gstav~~vi~~~~~l~vaN~GDSRaVl~~~~~~a~~Ls~DHkP~~~~E~~ 190 (330)
T KOG0698|consen 113 DVKDALRRAFLTKTDSEFLEK--REDNRSGGSTAVVALIKKGRKLYVANVGDSRAVLSRKGGVAVQLSVDHKPDREDERE 190 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHhh--ccCCCCCcceeeeeeEecCCEEEEEEcCCCcEEEecCCCeeeeCCCCCCCCcHHHHH
Confidence 48999999999 699999876 1112348899988888855 999999999999999765 899999999999999999
Q ss_pred HHHHcCCEEec----ccccCeeecccccCCCccccCCCCCCCCCccCcceEEEEcCCCCeEEEEEcCCccCCCChHHHHH
Q 016914 230 RIEASGGYVYD----GYLNGQLNVARALGDWHVEGMKGADGGPLSAEPELMSTKLTEEDEFLIIACDGVWDVFMSQNAVD 305 (380)
Q Consensus 230 Ri~~~gg~v~~----~~~~g~l~~tralGd~~~k~~~~~~g~~~~~~p~i~~~~l~~~d~~LVL~SDGl~d~l~~~ei~~ 305 (380)
||+++||+|.. .|++|.|+++|+|||..+|. .++.++|++....++..|+||||+||||||+|++||+++
T Consensus 191 RI~~~GG~v~~~~~~~Rv~G~LavsRa~GD~~~k~------~~v~a~Pei~~~~~~~~deFLiLasDGiwDv~s~qeav~ 264 (330)
T KOG0698|consen 191 RIEAAGGRVSNWGGVWRVNGVLAVSRAFGDVELKS------QGVIAEPEIQQVKINSDDEFLILASDGIWDVVSNQEAVD 264 (330)
T ss_pred HHHHcCCEEEEcCCcceEeceEEEeeecCCHHhcC------CcEecCCceEEEEcCCCCcEEEEeCCchhcccChHHHHH
Confidence 99999999984 39999999999999999985 368999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhCCCCCCeEEEEEEcCCCCCCCCC
Q 016914 306 FARRRLQEHNDPVMCSKDLVDEALKRKSGDNLAVVVVCFQSQPPPNLI 353 (380)
Q Consensus 306 ~i~~~l~~~~~~~~~a~~Lv~~A~~~g~~DNiTvivv~~~~~~~~~~~ 353 (380)
+++..+.....+..+++.|...|..+++.||||||||+|.+.+.....
T Consensus 265 ~V~~~~~~~~~~~~a~~~l~~~a~~~~s~DnitvvvV~l~~~~~~~~~ 312 (330)
T KOG0698|consen 265 LVRDELASISSPLAAAKLLATEALSRGSKDNITVVVVRLKSSPKSPSS 312 (330)
T ss_pred HHHHHhhccccHHHHHHHHHHHHhhcCCCCCeEEEEEEecCccccccC
Confidence 999877677889999999999999999999999999999887654433
No 4
>PTZ00224 protein phosphatase 2C; Provisional
Probab=100.00 E-value=3.1e-47 Score=371.90 Aligned_cols=253 Identities=28% Similarity=0.512 Sum_probs=217.3
Q ss_pred CCceeeEEeccccCCCCCCcceEEeccccccccCcCCCCCCceEEEEECCCCChhHHHHHHhhhhHHHhcCCCChHHHHH
Q 016914 77 VPVVRSGACADIGLRPTMEDVFLCVDNFMSDYGLKNLIDEPSAFYGMFDGHGGKHAADFASCHLPRFITEDEEFPQEIER 156 (380)
Q Consensus 77 ~~~~~~~~~s~~G~R~~nED~~~~~~~~~~~~~~~~~~~~~~~~~~V~DG~GG~~~a~~as~~l~~~l~~~~~~~~~~~~ 156 (380)
...+++|+.+++|.|++|||++++... ..+.+|+|||||||.++++++++++.+.+.+..... ..+
T Consensus 19 ~~~~~~g~~s~~G~R~~nED~~~v~~~------------~~~~lfgVfDGHgG~~~S~~~~~~l~~~l~~~~~~~--~~~ 84 (381)
T PTZ00224 19 NSIFRCASACVNGYRESMEDAHLLYLT------------DDWGFFGVFDGHVNDECSQYLARAWPQALEKEPEPM--TDE 84 (381)
T ss_pred CccEEEEEEeCCCCCCCCCCeeEeccC------------CCceEEEEEeCCCcHHHHHHHHHHHHHHHHhccccc--cHH
Confidence 356889999999999999999876432 355799999999999999999999998885432211 234
Q ss_pred HHHHHHHHHhHHHHHHcccccccccCcceEEEEEe-CCeEEEEecCCceEEEEeCCcceecCCCCCCCChHHHHHHHHcC
Q 016914 157 VVASAFLQTDSAFAEACSLDAALASGTTALAALVF-GRRLVVANVGDCRAVLCRRGKAIEMSRDHKPVCSKEKKRIEASG 235 (380)
Q Consensus 157 ~l~~af~~~~~~l~~~~~~~~~~~~GtT~~~~~i~-~~~l~vanvGDSRa~l~r~g~~~~lT~dH~~~~~~e~~Ri~~~g 235 (380)
.|.++|..+|++|.+... .+|||+++++|. ++.++|+||||||+|++++|++++||+||++.++.|+.||.++|
T Consensus 85 ~l~~a~~~~d~~i~~~~~-----~~GsTatv~lI~~~~~l~vaNVGDSRayl~r~g~~~~LT~DH~~~~~~E~~RI~~~g 159 (381)
T PTZ00224 85 RMEELCLEIDEEWMDSGR-----EGGSTGTFCVIMKDVHLQVGNVGDSRVLVCRDGKLVFATEDHKPNNPGERQRIEACG 159 (381)
T ss_pred HHHHHHHHHHHHHHhccc-----CCCCeEEEEEEEECCEEEEEEcccceEEEEECCEEEEcccCCCCCCHHHHhHHHHcc
Confidence 588999999999986432 369999998886 57999999999999999999999999999999999999999999
Q ss_pred CEEecccccCeeecccccCCCccccCCC--CCCCCCccCcceEEEEcCCCCeEEEEEcCCccC-CCChHHHHHHHHHHHh
Q 016914 236 GYVYDGYLNGQLNVARALGDWHVEGMKG--ADGGPLSAEPELMSTKLTEEDEFLIIACDGVWD-VFMSQNAVDFARRRLQ 312 (380)
Q Consensus 236 g~v~~~~~~g~l~~tralGd~~~k~~~~--~~g~~~~~~p~i~~~~l~~~d~~LVL~SDGl~d-~l~~~ei~~~i~~~l~ 312 (380)
|.+..+|++|.+.+||+|||..+|.... .....+.++|++..+.+.++| ||||||||||| +++++|+.+++.+.+.
T Consensus 160 g~v~~~Rv~G~l~vTRalGd~~~K~~~~~~~~~~~v~~~Pdi~~~~l~~~D-~llLaSDGL~d~~ls~eEi~~iv~~~l~ 238 (381)
T PTZ00224 160 GRVVSNRVDGDLAVSRAFGDRSFKVKGTGDYLEQKVIAVPDVTHLTCQSND-FIILACDGVFEGNFSNEEVVAFVKEQLE 238 (381)
T ss_pred CEeccccccCceeeecccCCcccccccccccccCcceeeeEEEEEECCCCC-EEEEECCCcCcCccCHHHHHHHHHHHHh
Confidence 9999999999999999999988775431 223346789999999999887 88899999999 7999999999987776
Q ss_pred cCCCHHHHHHHHHHHHHhCCCCCCeEEEEEEcCCCCC
Q 016914 313 EHNDPVMCSKDLVDEALKRKSGDNLAVVVVCFQSQPP 349 (380)
Q Consensus 313 ~~~~~~~~a~~Lv~~A~~~g~~DNiTvivv~~~~~~~ 349 (380)
...+++.+|+.|++.|+.+|+.||||||||+|...+.
T Consensus 239 ~~~~~~~aA~~Lv~~A~~rGs~DNITvIvV~~~~~~~ 275 (381)
T PTZ00224 239 TCDDLAVVAGRVCDEAIRRGSKDNISCLIVQLKDGAS 275 (381)
T ss_pred cCCCHHHHHHHHHHHHHhcCCCCCEEEEEEEeeCCCC
Confidence 6778999999999999999999999999999986653
No 5
>PF00481 PP2C: Protein phosphatase 2C; InterPro: IPR001932 This domain is found in protein phosphatase 2C, as well as other proteins eg. pyruvate dehydrogenase (lipoamide)-phosphatase (3.1.3.43 from EC), adenylate cyclase (4.6.1.1 from EC) and some bacterial stage II sporulation E proteins (3.1.3.16 from EC). Protein phosphatase 2C (PP2C) is one of the four major classes of mammalian serine/threonine specific protein phosphatases (3.1.3.16 from EC). PP2C [] is a monomeric enzyme of about 42 Kd which shows broad substrate specificity and is dependent on divalent cations (mainly manganese and magnesium) for its activity. Its exact physiological role is still unclear. Three isozymes are currently known in mammals: PP2C-alpha, -beta and -gamma. In yeast, there are at least four PP2C homologs: phosphatase PTC1 [], which has weak tyrosine phosphatase activity in addition to its activity on serines, phosphatases PTC2 and PTC3, and hypothetical protein YBR125c. Isozymes of PP2C are also known from Arabidopsis thaliana (ABI1, PPH1), Caenorhabditis elegans (FEM-2, F42G9.1, T23F11.1), Leishmania chagasi and Paramecium tetraurelia. In A. thaliana, the kinase associated protein phosphatase (KAPP) [] is an enzyme that dephosphorylates the Ser/Thr receptor-like kinase RLK5 and which contains a C-terminal PP2C domain. PP2C does not seem to be evolutionary related to the main family of serine/ threonine phosphatases: PP1, PP2A and PP2B. However, it is significantly similar to the catalytic subunit of pyruvate dehydrogenase phosphatase 3.1.3.43 from EC (PDPC) [], which catalyzes dephosphorylation and concomitant reactivation of the alpha subunit of the E1 component of the pyruvate dehydrogenase complex. PDPC is a mitochondrial enzyme and, like PP2C, is magnesium-dependent.; GO: 0003824 catalytic activity; PDB: 2I0O_A 2POP_C 2POM_A 2J4O_A 2I44_B 3MQ3_A 3N3C_A 2PNQ_B 2P8E_A 2IQ1_A ....
Probab=100.00 E-value=2.9e-47 Score=356.84 Aligned_cols=249 Identities=42% Similarity=0.712 Sum_probs=207.1
Q ss_pred eeEEeccccCCCCCCcceEEeccccccccCcCCCCCCceEEEEECCCCChhHHHHHHhhhhHHHhcCCCChH--HHHHHH
Q 016914 81 RSGACADIGLRPTMEDVFLCVDNFMSDYGLKNLIDEPSAFYGMFDGHGGKHAADFASCHLPRFITEDEEFPQ--EIERVV 158 (380)
Q Consensus 81 ~~~~~s~~G~R~~nED~~~~~~~~~~~~~~~~~~~~~~~~~~V~DG~GG~~~a~~as~~l~~~l~~~~~~~~--~~~~~l 158 (380)
.+++.+..|.|.+|||++++..++... .......+|+|||||||..+++++++++.+.+.+...+.. .+.++|
T Consensus 1 ~~~~~~~~g~r~~~eD~~~~~~~~~~~-----~~~~~~~l~~V~DGhgG~~~a~~~~~~l~~~l~~~~~~~~~~~~~~al 75 (254)
T PF00481_consen 1 DYGVSSMQGVRKEMEDRHLIIQNFNSN-----SGNDNVSLFGVFDGHGGSEAAEYASQNLPEFLKENLSFNDGNDIEEAL 75 (254)
T ss_dssp EEEEEEEECTSSSHHEEEEEEEEETCC-----TTEEEEEEEEEEEEESSSHHHHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred CcCeecCCCCCCcccCEEEEecCcccc-----CCCCCcEEEEEecCCCChhhHHHHHHHHHHHHHhhcccccccchhhcc
Confidence 367888999999999999998865321 2346889999999999999999999999987765432222 578999
Q ss_pred HHHHHH-HhHHHHHHcccccccccCcceEEEEEeCCeEEEEecCCceEEEEeCCcce-ecCCCCCCCChHHHHHHHHcCC
Q 016914 159 ASAFLQ-TDSAFAEACSLDAALASGTTALAALVFGRRLVVANVGDCRAVLCRRGKAI-EMSRDHKPVCSKEKKRIEASGG 236 (380)
Q Consensus 159 ~~af~~-~~~~l~~~~~~~~~~~~GtT~~~~~i~~~~l~vanvGDSRa~l~r~g~~~-~lT~dH~~~~~~e~~Ri~~~gg 236 (380)
..+|.. ++..+...........+|||+++++|.++++|+||||||||||++.+... +||+||+|.++.|+.||+++||
T Consensus 76 ~~a~~~~~~~~~~~~~~~~~~~~~GsTa~v~li~~~~l~vanvGDSravl~~~~~~~~~Lt~dH~~~~~~E~~RI~~~gg 155 (254)
T PF00481_consen 76 RQAFLAFTDESLYSDSENNESSKSGSTATVALIDGNKLYVANVGDSRAVLCRNGGIIKQLTRDHKPSNPDERERIRKAGG 155 (254)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHTTSEEEEEEEEEETTEEEEEEESS-EEEEEETTEEEEESS---STTSHHHHHHHHHTT-
T ss_pred cceeeecccccccccccccccccccccccccccccceeEEEeeeeeeeeeeeccccccccccccccchhhccceeecccc
Confidence 999999 88888873221133459999999999999999999999999999999888 9999999999999999999999
Q ss_pred EEe-cccccCeeecccccCCCccccCCCCCCCCCccCcceEEEEcCCCCeEEEEEcCCccCCCChHHHHHHHHHHHhcCC
Q 016914 237 YVY-DGYLNGQLNVARALGDWHVEGMKGADGGPLSAEPELMSTKLTEEDEFLIIACDGVWDVFMSQNAVDFARRRLQEHN 315 (380)
Q Consensus 237 ~v~-~~~~~g~l~~tralGd~~~k~~~~~~g~~~~~~p~i~~~~l~~~d~~LVL~SDGl~d~l~~~ei~~~i~~~l~~~~ 315 (380)
.+. ..|++|.|.+||+|||..+|... +.+++++|++..+.++++|.|||||||||||+|+++|+++++++......
T Consensus 156 ~v~~~~rv~g~l~~sRalGd~~~k~~~---~~~v~~~P~i~~~~l~~~d~flvlaSDGlwd~l~~~ei~~~v~~~~~~~~ 232 (254)
T PF00481_consen 156 RVSENGRVNGVLAVSRALGDFDLKPPG---KPGVIAEPDISEVDLTPDDEFLVLASDGLWDVLSNEEIVDIVRESLNSGR 232 (254)
T ss_dssp GEEETEEETTTBSSSB-EE-GGGTTCT---SSSSB---EEEEEEEBTTEEEEEEE-HHHHTTSHHHHHHHHHHHHHHHHS
T ss_pred ccccchhhhhccccccccccccccccc---cceeeeecccccccccccceEEEEEcccccccCCHHHHHHHHHHHHhcCC
Confidence 998 89999999999999999998732 34689999999999999999999999999999999999999998877666
Q ss_pred CHHHHHHHHHHHHHhCCCCCCe
Q 016914 316 DPVMCSKDLVDEALKRKSGDNL 337 (380)
Q Consensus 316 ~~~~~a~~Lv~~A~~~g~~DNi 337 (380)
.|+.+|+.|+++|+++|+.|||
T Consensus 233 ~~~~~a~~L~~~A~~~gs~DNi 254 (254)
T PF00481_consen 233 SPQEAAEKLVDEAIARGSKDNI 254 (254)
T ss_dssp HHHHHHHHHHHHHHHTTHHSHE
T ss_pred cHHHHHHHHHHHHHhcCCCCCC
Confidence 7999999999999999999997
No 6
>KOG0699 consensus Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=100.00 E-value=1.4e-44 Score=335.29 Aligned_cols=167 Identities=43% Similarity=0.692 Sum_probs=156.9
Q ss_pred ccCcceEEEEEeCCeEEEEecCCceEEEEeCCcceecCCCCCCCChHHHHHHHHcCCEEe-cccccCeeecccccCCCcc
Q 016914 180 ASGTTALAALVFGRRLVVANVGDCRAVLCRRGKAIEMSRDHKPVCSKEKKRIEASGGYVY-DGYLNGQLNVARALGDWHV 258 (380)
Q Consensus 180 ~~GtT~~~~~i~~~~l~vanvGDSRa~l~r~g~~~~lT~dH~~~~~~e~~Ri~~~gg~v~-~~~~~g~l~~tralGd~~~ 258 (380)
.+|||+++|++.+++|+|||.||||++|.|.|+++.|+.||+|....|..||.++||.|. ++|+||.|+++|||||..|
T Consensus 329 DSGtTAvVcLv~g~~liVANAGDSRcV~sr~GkAvdmS~DHKPEDevE~~RI~~AGG~vtlDGRVNGGLNLSRA~GDHaY 408 (542)
T KOG0699|consen 329 DSGTTAVVCLVGGDKLIVANAGDSRCVLSRNGKAVDMSVDHKPEDEVETNRIHAAGGQVTLDGRVNGGLNLSRAFGDHAY 408 (542)
T ss_pred CCCceEEEEEecCceEEEecCCCcceEEecCCceeecccCCCcccHHHHHHHHhcCCeEeecceecCccchhhhhhhhhh
Confidence 489999999999999999999999999999999999999999999999999999999998 9999999999999999999
Q ss_pred ccCCC--CCCCCCccCcceEEEEcCCCCeEEEEEcCCccCCCChHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhC-----
Q 016914 259 EGMKG--ADGGPLSAEPELMSTKLTEEDEFLIIACDGVWDVFMSQNAVDFARRRLQEHNDPVMCSKDLVDEALKR----- 331 (380)
Q Consensus 259 k~~~~--~~g~~~~~~p~i~~~~l~~~d~~LVL~SDGl~d~l~~~ei~~~i~~~l~~~~~~~~~a~~Lv~~A~~~----- 331 (380)
|.... ...+.+++-|+|..+.|+++|+|+||+|||||++|+.|+++++|+..|......-.+|++|++.++.-
T Consensus 409 K~N~~Lp~eEQMIsALPDiK~l~lTpedEFmVvACDGIWN~MsSqeVVdFvr~~l~~n~~ls~iceeL~D~CLAp~T~GD 488 (542)
T KOG0699|consen 409 KKNQELPLEEQMISALPDIKILALTPEDEFMVVACDGIWNSMSSQEVVDFVRDLLAKNSSLSEICEELCDACLAPSTDGD 488 (542)
T ss_pred hcccCCChHHHHhhhcccceeEeecCcccEEEEEccchhhhccHHHHHHHHHHHHhcCchHHHHHHHHHHhhcCCCCCCC
Confidence 87653 23567899999999999999999999999999999999999999999999999999999999999863
Q ss_pred -CCCCCeEEEEEEcCC
Q 016914 332 -KSGDNLAVVVVCFQS 346 (380)
Q Consensus 332 -g~~DNiTvivv~~~~ 346 (380)
.++||||||+++|.+
T Consensus 489 GTGCDNMT~ii~~Fkr 504 (542)
T KOG0699|consen 489 GTGCDNMTVIITTFKR 504 (542)
T ss_pred CcCCCcceEEEEEecc
Confidence 379999999999973
No 7
>COG0631 PTC1 Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=100.00 E-value=1.8e-43 Score=331.69 Aligned_cols=243 Identities=30% Similarity=0.431 Sum_probs=205.5
Q ss_pred CCceeeEEeccccC-CCCCCcceEEeccccccccCcCCCCCCceEEEEECCCCChhHHHHHHhhhhHHHhcCC----CCh
Q 016914 77 VPVVRSGACADIGL-RPTMEDVFLCVDNFMSDYGLKNLIDEPSAFYGMFDGHGGKHAADFASCHLPRFITEDE----EFP 151 (380)
Q Consensus 77 ~~~~~~~~~s~~G~-R~~nED~~~~~~~~~~~~~~~~~~~~~~~~~~V~DG~GG~~~a~~as~~l~~~l~~~~----~~~ 151 (380)
.+.+.+++.|+.|. |..|||++.+..+. .... ..||+|||||||+.++++|++.+++.|.+.. ...
T Consensus 5 ~~~~~~~~~s~~g~~R~~NeD~~~~~~~~--------~~~~-~~l~~V~DG~GGh~~ge~aS~~~v~~l~~~~~~~~~~~ 75 (262)
T COG0631 5 ILSLKVAGLSDVGTVRKHNEDAFLIKPNE--------NGNL-LLLFAVADGMGGHAAGEVASKLAVEALARLFDETNFNS 75 (262)
T ss_pred cceeeeeeeccCCCccCCCCcceeecccc--------CCcc-eeEEEEEeCccchhHHHHHHHHHHHHHHHHHHhccccc
Confidence 35678899999998 88999999986531 1122 6799999999999999999999998886531 111
Q ss_pred HH--HHHHHHHHHHHHhHHHHHHccc-ccccccCcceEEEEEeCCeEEEEecCCceEEEEeCCcceecCCCCCCCChHHH
Q 016914 152 QE--IERVVASAFLQTDSAFAEACSL-DAALASGTTALAALVFGRRLVVANVGDCRAVLCRRGKAIEMSRDHKPVCSKEK 228 (380)
Q Consensus 152 ~~--~~~~l~~af~~~~~~l~~~~~~-~~~~~~GtT~~~~~i~~~~l~vanvGDSRa~l~r~g~~~~lT~dH~~~~~~e~ 228 (380)
.. +.+.+.+++..++..+...... .....+|||++++++.++++++|||||||+||+++|++++||.||++.+..++
T Consensus 76 ~~~~~~~~l~~~~~~~n~~i~~~~~~~~~~~~mgtTl~~~~~~~~~l~~a~vGDSR~yl~~~~~~~~lT~DH~~~~~~~~ 155 (262)
T COG0631 76 LNESLEELLKEAILKANEAIAEEGQLNEDVRGMGTTLVLLLIRGNKLYVANVGDSRAYLLRDGELKQLTEDHSLVNRLEQ 155 (262)
T ss_pred cchhHHHHHHHHHHHHHHHHHHhhhcccccCCCceeEEEEEEECCeEEEEEccCCeEEEEcCCceEEeccCCcHHHHHHH
Confidence 11 6789999999999999887542 22346999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCEEecccccCeeecccccCCCccccCCCCCCCCCccCcceEEEEcCCCCeEEEEEcCCccCCCChHHHHHHHH
Q 016914 229 KRIEASGGYVYDGYLNGQLNVARALGDWHVEGMKGADGGPLSAEPELMSTKLTEEDEFLIIACDGVWDVFMSQNAVDFAR 308 (380)
Q Consensus 229 ~Ri~~~gg~v~~~~~~g~l~~tralGd~~~k~~~~~~g~~~~~~p~i~~~~l~~~d~~LVL~SDGl~d~l~~~ei~~~i~ 308 (380)
.|+...++.....+.+ .+||+||+.. ..+|++....++++| |||||||||||.++++++.++++
T Consensus 156 ~~~~~~~~~~~~~~~~---~ltralG~~~------------~~~p~~~~~~~~~~d-~llL~SDGl~d~v~~~~i~~il~ 219 (262)
T COG0631 156 RGIITPEEARSHPRRN---ALTRALGDFD------------LLEPDITELELEPGD-FLLLCSDGLWDVVSDDEIVDILK 219 (262)
T ss_pred hcCCCHHHHHhCccch---hhhhhcCCCc------------ccceeEEEEEcCCCC-EEEEECCCCccCcCHHHHHHHHh
Confidence 9877766655554444 7899999863 378999999999995 88899999999999999999965
Q ss_pred HHHhcCCCHHHHHHHHHHHHHhCCCCCCeEEEEEEcCCCC
Q 016914 309 RRLQEHNDPVMCSKDLVDEALKRKSGDNLAVVVVCFQSQP 348 (380)
Q Consensus 309 ~~l~~~~~~~~~a~~Lv~~A~~~g~~DNiTvivv~~~~~~ 348 (380)
. ..+++.++++|++.|+.+++.||+|+++|.+...+
T Consensus 220 ~----~~~~~~~~~~li~~a~~~g~~DNiT~ilv~~~~~~ 255 (262)
T COG0631 220 N----SETPQEAADKLIELALEGGGPDNITVVLVRLNGEG 255 (262)
T ss_pred c----CCCHHHHHHHHHHHHHhcCCCCceEEEEEEeeccc
Confidence 3 67899999999999999999999999999997665
No 8
>cd00143 PP2Cc Serine/threonine phosphatases, family 2C, catalytic domain; The protein architecture and deduced catalytic mechanism of PP2C phosphatases are similar to the PP1, PP2A, PP2B family of protein Ser/Thr phosphatases, with which PP2C shares no sequence similarity.
Probab=100.00 E-value=7.4e-38 Score=291.21 Aligned_cols=245 Identities=44% Similarity=0.708 Sum_probs=207.7
Q ss_pred eEEeccccCCCCCCcceEEeccccccccCcCCCCCCceEEEEECCCCChhHHHHHHhhhhHHHhcCCC-----ChHHHHH
Q 016914 82 SGACADIGLRPTMEDVFLCVDNFMSDYGLKNLIDEPSAFYGMFDGHGGKHAADFASCHLPRFITEDEE-----FPQEIER 156 (380)
Q Consensus 82 ~~~~s~~G~R~~nED~~~~~~~~~~~~~~~~~~~~~~~~~~V~DG~GG~~~a~~as~~l~~~l~~~~~-----~~~~~~~ 156 (380)
++..+..|.|+.|||++++..... ..++.+|+|||||||+..++++++.+.+.+.+... ....+..
T Consensus 3 ~~~~~~~g~r~~neD~~~~~~~~~---------~~~~~~~~V~DG~Gg~~~~~~as~~~~~~l~~~~~~~~~~~~~~~~~ 73 (254)
T cd00143 3 AGVSDKGGDRKTNEDAVVIKPNLN---------NEDGGLFGVFDGHGGHAAGEFASKLLVEELLEELEETLTLSEEDIEE 73 (254)
T ss_pred eeeecCCCCCCCCcceEEEeccCC---------CCCcEEEEEEcCCChHHHHHHHHHHHHHHHHHHHhhccccchHHHHH
Confidence 466667778999999998865410 03678999999999999999999999988866332 1456778
Q ss_pred HHHHHHHHHhHHHHHHccc-ccccccCcceEEEEEeCCeEEEEecCCceEEEEeCCcceecCCCCCCCChHHHHHHHHcC
Q 016914 157 VVASAFLQTDSAFAEACSL-DAALASGTTALAALVFGRRLVVANVGDCRAVLCRRGKAIEMSRDHKPVCSKEKKRIEASG 235 (380)
Q Consensus 157 ~l~~af~~~~~~l~~~~~~-~~~~~~GtT~~~~~i~~~~l~vanvGDSRa~l~r~g~~~~lT~dH~~~~~~e~~Ri~~~g 235 (380)
.|..+|..+++.+...... .....+|||++++++.++.++++|+||||+|++++++++++|.||++.++.+..|+...+
T Consensus 74 ~l~~~~~~~~~~l~~~~~~~~~~~~~gtT~~~~~~~~~~l~~~~vGDsr~~~~~~~~~~~lt~dh~~~~~~~~~~i~~~~ 153 (254)
T cd00143 74 ALRKAFLRADEEILEEAQDEPDDARSGTTAVVALIRGNKLYVANVGDSRAVLCRNGEAVQLTKDHKPVNEEERERIEKAG 153 (254)
T ss_pred HHHHHHHHHHHHHHHhhhhccCCCCCCCcEEEEEEECCEEEEEEecCcEEEEEcCCceeEcCCCCCCcChHHHHHHHHcC
Confidence 8999999999999876543 222358999999999999999999999999999999999999999999999999999999
Q ss_pred CEEecccccCeeecccccCCCccccCCCCCCCCCccCcceEEEEc-CCCCeEEEEEcCCccCCCChHHHHHHHHHHHhcC
Q 016914 236 GYVYDGYLNGQLNVARALGDWHVEGMKGADGGPLSAEPELMSTKL-TEEDEFLIIACDGVWDVFMSQNAVDFARRRLQEH 314 (380)
Q Consensus 236 g~v~~~~~~g~l~~tralGd~~~k~~~~~~g~~~~~~p~i~~~~l-~~~d~~LVL~SDGl~d~l~~~ei~~~i~~~l~~~ 314 (380)
+++.....++...+||++|+..+|. ....+|++....+ .++| +|||||||||+++++++|.+++.....+
T Consensus 154 ~~~~~~~~~~~~~~t~~lG~~~~~~-------~~~~~~~~~~~~l~~~~d-~ill~SDG~~~~l~~~~i~~~~~~~~~~- 224 (254)
T cd00143 154 GRVSNGRVPGVLAVTRALGDFDLKP-------GVSAEPDVTVVKLTEDDD-FLILASDGLWDVLSNQEAVDIVRSELAK- 224 (254)
T ss_pred CcEEeCEEcCceeeccccCCccccC-------CEEcCCeEEEEEeCCCCc-EEEEECCCCeeccChHHHHHHHHHHhcc-
Confidence 9888778888999999999987764 3578899999999 6766 6779999999999999999987653211
Q ss_pred CCHHHHHHHHHHHHHhCCCCCCeEEEEEEc
Q 016914 315 NDPVMCSKDLVDEALKRKSGDNLAVVVVCF 344 (380)
Q Consensus 315 ~~~~~~a~~Lv~~A~~~g~~DNiTvivv~~ 344 (380)
.+++++|+.|++.|..+++.||+|+||+.|
T Consensus 225 ~~~~~~a~~l~~~a~~~~~~Dn~t~i~~~~ 254 (254)
T cd00143 225 EDLQEAAQELVDLALRRGSHDNITVVVVRL 254 (254)
T ss_pred cCHHHHHHHHHHHHHhCCCCCCEEEEEEeC
Confidence 379999999999999999999999999975
No 9
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=100.00 E-value=2.8e-38 Score=324.99 Aligned_cols=253 Identities=21% Similarity=0.249 Sum_probs=183.7
Q ss_pred ceeeEEeccccC-CCCCCcceEEeccccccccCcCCCCCCceEEEEECCCCChhHHHHHHhhhhHHHhc----CCCChHH
Q 016914 79 VVRSGACADIGL-RPTMEDVFLCVDNFMSDYGLKNLIDEPSAFYGMFDGHGGKHAADFASCHLPRFITE----DEEFPQE 153 (380)
Q Consensus 79 ~~~~~~~s~~G~-R~~nED~~~~~~~~~~~~~~~~~~~~~~~~~~V~DG~GG~~~a~~as~~l~~~l~~----~~~~~~~ 153 (380)
.++++++|++|. |+.|||+|.+..++...............+|+|||||||+.++++||+.+.+.|.+ .......
T Consensus 374 ~l~~a~~Td~G~~R~~NEDa~~i~~~~~~~~~~~~~~~~~~~L~aVaDGmGGh~~GevAS~lAv~~L~~~~~~~~~~~~~ 453 (645)
T PRK14559 374 SLEDAGRTDVGRQRHHNEDYFGINTRIQKLENPHGRIVQARGLYILCDGMGGHAAGEVASALAVETLQQYFQQHWQDELP 453 (645)
T ss_pred eEEEEEECCCCCCCcccCCcccccccccccccccccccccceEEEEEeCCCCchhHHHHHHHHHHHHHHHHHhhhccccc
Confidence 478899999997 99999998765432111000000112457999999999999888887776665533 1111112
Q ss_pred HHHHHHHHHHHHhHHHHHHcccc---cccccCcceEEEEEeCCeEEEEecCCceEEEE-eCCcceecCCCCCCCChHHHH
Q 016914 154 IERVVASAFLQTDSAFAEACSLD---AALASGTTALAALVFGRRLVVANVGDCRAVLC-RRGKAIEMSRDHKPVCSKEKK 229 (380)
Q Consensus 154 ~~~~l~~af~~~~~~l~~~~~~~---~~~~~GtT~~~~~i~~~~l~vanvGDSRa~l~-r~g~~~~lT~dH~~~~~~e~~ 229 (380)
.++.|+++|..+|..|.+..... ...++|||++++++.++++|++||||||+|++ ++|++++||+||++.+..
T Consensus 454 ~~~~L~~ai~~AN~~I~~~~~~~~~~~~~~MGTTlv~alI~~~~l~ianVGDSRaYli~r~g~l~QLT~DHs~~~~l--- 530 (645)
T PRK14559 454 DEETIREAIYLANEAIYDLNQQNARSGSGRMGTTLVMALVQDTQVAVAHVGDSRLYRVTRKGGLEQLTVDHEVGQRE--- 530 (645)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcccccCCCCCceeeeEEEECCEEEEEEecCceEEEEecCCeEEEeCCCCCHHHHH---
Confidence 35679999999999998754322 23359999999999999999999999999998 578999999999986443
Q ss_pred HHHHcCCEEec--ccccCeeecccccCCCccccCCCCCCCCCccCcceEEEEcCCCCeEEEEEcCCccCC-CChHHHHHH
Q 016914 230 RIEASGGYVYD--GYLNGQLNVARALGDWHVEGMKGADGGPLSAEPELMSTKLTEEDEFLIIACDGVWDV-FMSQNAVDF 306 (380)
Q Consensus 230 Ri~~~gg~v~~--~~~~g~l~~tralGd~~~k~~~~~~g~~~~~~p~i~~~~l~~~d~~LVL~SDGl~d~-l~~~ei~~~ 306 (380)
.+.| .-.. ....+...+||++|+...+ ..+|++..+.+.++| +||||||||||+ +....+.+.
T Consensus 531 --v~~G-i~~~~a~~~p~~~~LTrALG~~~~~----------~l~Pdi~~~~L~~gD-~lLLCSDGL~D~~~ve~~~~~~ 596 (645)
T PRK14559 531 --IQRG-VEPQIAYARPDAYQLTQALGPRDNS----------AIQPDIQFLEIEEDT-LLLLCSDGLSDNDLLETHWQTH 596 (645)
T ss_pred --HHhC-CCHHHHhcCcccceeeeccCCCCCC----------cccceEEEEEcCCCC-EEEEECCCCCCCcccchHHHHH
Confidence 3333 1000 0112456789999986432 347999999998877 666999999995 333344444
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHhCCCCCCeEEEEEEcCCCC
Q 016914 307 ARRRLQEHNDPVMCSKDLVDEALKRKSGDNLAVVVVCFQSQP 348 (380)
Q Consensus 307 i~~~l~~~~~~~~~a~~Lv~~A~~~g~~DNiTvivv~~~~~~ 348 (380)
+...+....+++++++.|++.|+.+|+.||+|+|||++...|
T Consensus 597 l~~il~~~~~l~~aa~~Li~~Al~~gg~DNITvIvV~l~~~p 638 (645)
T PRK14559 597 LLPLLSSSANLDQGLNKLIDLANQYNGHDNITAILVRLKVRP 638 (645)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHcCCCCcEEEEEEEeccCC
Confidence 445566677899999999999999999999999999996544
No 10
>smart00332 PP2Cc Serine/threonine phosphatases, family 2C, catalytic domain. The protein architecture and deduced catalytic mechanism of PP2C phosphatases are similar to the PP1, PP2A, PP2B family of protein Ser/Thr phosphatases, with which PP2C shares no sequence similarity.
Probab=100.00 E-value=3.9e-37 Score=287.12 Aligned_cols=244 Identities=44% Similarity=0.757 Sum_probs=208.1
Q ss_pred eeeEEeccccCCCCCCcceEEeccccccccCcCCCCCCceEEEEECCCCChhHHHHHHhhhhHHHhcCCCCh----HHHH
Q 016914 80 VRSGACADIGLRPTMEDVFLCVDNFMSDYGLKNLIDEPSAFYGMFDGHGGKHAADFASCHLPRFITEDEEFP----QEIE 155 (380)
Q Consensus 80 ~~~~~~s~~G~R~~nED~~~~~~~~~~~~~~~~~~~~~~~~~~V~DG~GG~~~a~~as~~l~~~l~~~~~~~----~~~~ 155 (380)
+.++..+..|.|..|||++++...+ .....+|+|||||||..+++++++.+.+.+.+..... ..+.
T Consensus 6 ~~~~~~~~~~~r~~neD~~~~~~~~----------~~~~~~~~v~DG~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (255)
T smart00332 6 LRYGLSSMQGVRKPMEDAHVITPDL----------SDSGAFFGVFDGHGGSEAAKFLSKNLPEILAEELIKHKDELEDVE 75 (255)
T ss_pred eeEEEecCCCCCCCCcceEEEeccC----------CCCeEEEEEEeCCCcHHHHHHHHHHHHHHHHHhHhhcccchhHHH
Confidence 5556666677899999999876431 2568899999999999999999999998886643222 3578
Q ss_pred HHHHHHHHHHhHHHHHHccccc-ccccCcceEEEEEeCCeEEEEecCCceEEEEeCCcceecCCCCCCCChHHHHHHHHc
Q 016914 156 RVVASAFLQTDSAFAEACSLDA-ALASGTTALAALVFGRRLVVANVGDCRAVLCRRGKAIEMSRDHKPVCSKEKKRIEAS 234 (380)
Q Consensus 156 ~~l~~af~~~~~~l~~~~~~~~-~~~~GtT~~~~~i~~~~l~vanvGDSRa~l~r~g~~~~lT~dH~~~~~~e~~Ri~~~ 234 (380)
+.|.++|..++.++........ ...+|||++++++..++++++|+||||+|+++++++.++|+||++.+..|..||.+.
T Consensus 76 ~~l~~~~~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~l~~~~vGDsr~y~~~~~~~~~lt~dh~~~~~~~~~~i~~~ 155 (255)
T smart00332 76 EALRKAFLKTDEEILEELESLEEDAGSGSTAVVALISGNKLYVANVGDSRAVLCRNGKAVQLTEDHKPSNEDERARIEAA 155 (255)
T ss_pred HHHHHHHHHHHHHHHHhhhhccCCCCCCccEEEEEEECCEEEEEeccCceEEEEeCCceeEcCCCCCCcCHHHHHHHHHc
Confidence 8899999999999987644321 234899999999999999999999999999999999999999999999999999999
Q ss_pred CCEEecccccCeeecccccCCCccccCCCCCCCCCccCcceEEEEc-CCCCeEEEEEcCCccCCCChHHHHHHHHHHHhc
Q 016914 235 GGYVYDGYLNGQLNVARALGDWHVEGMKGADGGPLSAEPELMSTKL-TEEDEFLIIACDGVWDVFMSQNAVDFARRRLQE 313 (380)
Q Consensus 235 gg~v~~~~~~g~l~~tralGd~~~k~~~~~~g~~~~~~p~i~~~~l-~~~d~~LVL~SDGl~d~l~~~ei~~~i~~~l~~ 313 (380)
++.+..++.++...+||++|+..+|. .+..+|++...++ .++| +|||||||||++++++++.+++.+....
T Consensus 156 ~~~~~~~~~~~~~~lt~~~g~~~~~~-------~i~~~p~~~~~~~~~~~d-~ill~SDGv~~~l~~~~i~~~~~~~~~~ 227 (255)
T smart00332 156 GGFVINGRVNGVLALSRAIGDFFLKP-------YVSAEPDVTVVELTEKDD-FLILASDGLWDVLSNQEVVDIVRKHLSK 227 (255)
T ss_pred CCEEECCeECCeEecccccCCHhhcC-------CeEeeeEEEEEEecCCCc-EEEEECCccccCCCHHHHHHHHHHHhhc
Confidence 99998888889999999999987764 4678899999996 6666 6779999999999999999998764322
Q ss_pred CCCHHHHHHHHHHHHHhCCCCCCeEEEEE
Q 016914 314 HNDPVMCSKDLVDEALKRKSGDNLAVVVV 342 (380)
Q Consensus 314 ~~~~~~~a~~Lv~~A~~~g~~DNiTvivv 342 (380)
.+++++++.|++.|..++..||+|+|||
T Consensus 228 -~~~~~~~~~l~~~a~~~~~~Dn~T~ivv 255 (255)
T smart00332 228 -SDPEEAAKRLIDLALARGSKDNITVIVV 255 (255)
T ss_pred -CCHHHHHHHHHHHHHHcCCCCCeEEEEC
Confidence 3699999999999999999999999985
No 11
>KOG0700 consensus Protein phosphatase 2C/pyruvate dehydrogenase (lipoamide) phosphatase [Signal transduction mechanisms]
Probab=100.00 E-value=4.4e-38 Score=299.12 Aligned_cols=218 Identities=32% Similarity=0.471 Sum_probs=184.5
Q ss_pred CCCceEEEEECCCCChhHHHHHHhhhhHHHhc------------C-CC---------------------ChHHHHHHHHH
Q 016914 115 DEPSAFYGMFDGHGGKHAADFASCHLPRFITE------------D-EE---------------------FPQEIERVVAS 160 (380)
Q Consensus 115 ~~~~~~~~V~DG~GG~~~a~~as~~l~~~l~~------------~-~~---------------------~~~~~~~~l~~ 160 (380)
.+++.|+||||||||.++++|++++|..++.. . .+ ....+.++|.+
T Consensus 96 ~~~~~fvGIyDGhgGp~as~~v~~~L~~~v~~~L~~~~~~~~~~f~~e~~~~~~~~~~~~~~~~~~~~~~~~~v~~al~~ 175 (390)
T KOG0700|consen 96 ENGWLFVGIYDGHGGPDASRFLSDHLYPYVARELQGLLWQDEERFPSEYKSEELEHLLVYWKQLSSADQRHGDVLEALSK 175 (390)
T ss_pred cCCeEEEEEecCCCCccHHHHHHHHHHHHHHHHhhhhhhhhccccccccccchhhhhhhhhhcccccCccchhHHHHHHH
Confidence 68999999999999999999999999987761 1 11 14568899999
Q ss_pred HHHHHhHHHHHHcccc-----cccccCcceEEEEEeCCeEEEEecCCceEEEEe---CC---cceecCCCCCCCChHHHH
Q 016914 161 AFLQTDSAFAEACSLD-----AALASGTTALAALVFGRRLVVANVGDCRAVLCR---RG---KAIEMSRDHKPVCSKEKK 229 (380)
Q Consensus 161 af~~~~~~l~~~~~~~-----~~~~~GtT~~~~~i~~~~l~vanvGDSRa~l~r---~g---~~~~lT~dH~~~~~~e~~ 229 (380)
||.+++++|.+..... ...-+|+||++++|.+..|||||+|||||+|.+ ++ .++|||+||+.+++.|++
T Consensus 176 Af~~tee~fl~~v~~~~~~~p~lA~~GSC~Lv~~i~~~~LyVaN~GDSRAVLG~~~~~~~~~~A~qLS~dHn~~ne~Ev~ 255 (390)
T KOG0700|consen 176 AFEATEEDFLEMVDKQLQENPELALVGSCCLVGLIKGGDLYVANVGDSRAVLGVVENNGSWLVAVQLSTDHNASNEDEVR 255 (390)
T ss_pred HHHHHHHHHHHHHHHhhccchhhhhhcceEEEEEEeCCeEEEEecCcchhhhceecCCCCeEEEEecChhhccccHHHHH
Confidence 9999999998754321 122499999999999999999999999999974 33 579999999999999999
Q ss_pred HHHHcCC----EEecc--cccCeeecccccCCCccccCCCC--------------CCCCCccCcceEEEEcCCCCeEEEE
Q 016914 230 RIEASGG----YVYDG--YLNGQLNVARALGDWHVEGMKGA--------------DGGPLSAEPELMSTKLTEEDEFLII 289 (380)
Q Consensus 230 Ri~~~gg----~v~~~--~~~g~l~~tralGd~~~k~~~~~--------------~g~~~~~~p~i~~~~l~~~d~~LVL 289 (380)
||+..+- .+... |+.|.|.++|||||..+|..+-. ..++++++|+++...|++.|.||||
T Consensus 256 Rir~eHPdd~~~vv~~~~RvkG~L~vsRAfGd~~lK~~~~n~e~l~~~fr~~~~~t~PyltaeP~i~~HrL~p~DkFLIl 335 (390)
T KOG0700|consen 256 RIRSEHPDDPHIVVNKHWRVKGILQVSRAFGDGYLKWPEFNQEPLLEKFRIPYIGTPPYLTAEPSITHHKLTPNDKFLIL 335 (390)
T ss_pred HHHHhCCCCcceEeeccceeeEEEEeeeeccceeecchhhccchhHhhcCCCCCCCCCceeccceEEEEEcCCCCeEEEE
Confidence 9999873 44444 99999999999999999976621 2467899999999999999999999
Q ss_pred EcCCccCCCChHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCC
Q 016914 290 ACDGVWDVFMSQNAVDFARRRLQEHNDPVMCSKDLVDEALKRK 332 (380)
Q Consensus 290 ~SDGl~d~l~~~ei~~~i~~~l~~~~~~~~~a~~Lv~~A~~~g 332 (380)
+|||||++|++||+++++...+.....-+.+|+.||++|+.+.
T Consensus 336 ASDGLwE~lsNeeaV~lV~~~i~~~~pd~~~A~hLIr~aL~~a 378 (390)
T KOG0700|consen 336 ASDGLWEYLSNEEAVSLVHEFISGKFPDGNPATHLIRHALGRA 378 (390)
T ss_pred eccchhhhcChHHHHHHHHHhhccCCCCCCHHHHHHHHHHhhh
Confidence 9999999999999999999877653445788999999998654
No 12
>KOG1323 consensus Serine/threonine phosphatase [Signal transduction mechanisms]
Probab=99.96 E-value=4.7e-28 Score=223.36 Aligned_cols=263 Identities=28% Similarity=0.371 Sum_probs=194.8
Q ss_pred EEeccccCCCCCCcceEEeccccccc-cCcCCCCCCceEEEEECCCCChhHHHHHHhhhhHHHhcCCC------------
Q 016914 83 GACADIGLRPTMEDVFLCVDNFMSDY-GLKNLIDEPSAFYGMFDGHGGKHAADFASCHLPRFITEDEE------------ 149 (380)
Q Consensus 83 ~~~s~~G~R~~nED~~~~~~~~~~~~-~~~~~~~~~~~~~~V~DG~GG~~~a~~as~~l~~~l~~~~~------------ 149 (380)
|+.|.+-++..|.|.-.....-.... .........+.+|.+||||.|..+|-.|++.+++.+.+...
T Consensus 108 gs~t~~~n~n~~~~~~~l~~g~~~~~k~~~~a~~~~~~~~slfdghags~~avvAsrll~~hI~~ql~~vvd~i~~~~~~ 187 (493)
T KOG1323|consen 108 GSETRKRNSNENDDDPMLTPGGDDTVKSSMFAPRADGALFSLFDGHAGSAVAVVASRLLHRHIKEQLCEVVDTILHMDRH 187 (493)
T ss_pred CccccCCCCCccccCcCCCCCCCcchhhcccCCCCcceeeeeecCCCcchHHHHHHHHHHHhhhHHHHHHHHHHhhhccc
Confidence 55555555666666544322110000 01112456789999999999999999999888766543100
Q ss_pred ----------------------------ChHHHHHHHHHHHHHHhHHHHHHcccccccccCcceEEEEEeCCeEEEEecC
Q 016914 150 ----------------------------FPQEIERVVASAFLQTDSAFAEACSLDAALASGTTALAALVFGRRLVVANVG 201 (380)
Q Consensus 150 ----------------------------~~~~~~~~l~~af~~~~~~l~~~~~~~~~~~~GtT~~~~~i~~~~l~vanvG 201 (380)
...-+.-+|..||+.+|+.+....+.. ....|||++++++.-+++|+||.|
T Consensus 188 ~~~~~g~~~~~s~~s~~~~~~~~ek~Ir~E~LViGAlEsAFqemDeqiarer~~~-~~~GGCtalvvi~llGKlYvaNAG 266 (493)
T KOG1323|consen 188 ENLNFGKHRSESSYSMSEMSREDEKRIRHEHLVIGALESAFQEMDEQIARERQVW-RLPGGCTALVVIVLLGKLYVANAG 266 (493)
T ss_pred cccccccccccCCcccccccchhhccCchHHhhHHHHHHHHHHHHHHHHHHHHhh-cCCCCceEEEeeeeccceEEccCC
Confidence 011256789999999999998764433 234899999999999999999999
Q ss_pred CceEEEEeCCcceecCCCCCCCChHHHHHHHHcC--------CEEec---------------------------------
Q 016914 202 DCRAVLCRRGKAIEMSRDHKPVCSKEKKRIEASG--------GYVYD--------------------------------- 240 (380)
Q Consensus 202 DSRa~l~r~g~~~~lT~dH~~~~~~e~~Ri~~~g--------g~v~~--------------------------------- 240 (380)
||||+|+|++++++|+++.+| +.|++|++..+ +.+..
T Consensus 267 DsRAIlVrndeirplS~efTP--etERqRlQ~Laf~~PeLlgneFtrLEfprRl~~~dLgqrvLyRD~~MtGWayKtve~ 344 (493)
T KOG1323|consen 267 DSRAILVRNDEIRPLSKEFTP--ETERQRLQELAFRNPELLGNEFTRLEFPRRLTIKDLGQRVLYRDWNMTGWAYKTVEE 344 (493)
T ss_pred CceEEEEecCCeeecccccCc--HHHHHHHHHHhhcChHhhcccccceecccccChhhhcceeeeeccccccceeehhhh
Confidence 999999999999999999998 57899998854 11110
Q ss_pred --------------ccccCeeecccccCCCccccCCCC--CCCCCccCcceEEEEcCC----CCeEEEEEcCCccCCCCh
Q 016914 241 --------------GYLNGQLNVARALGDWHVEGMKGA--DGGPLSAEPELMSTKLTE----EDEFLIIACDGVWDVFMS 300 (380)
Q Consensus 241 --------------~~~~g~l~~tralGd~~~k~~~~~--~g~~~~~~p~i~~~~l~~----~d~~LVL~SDGl~d~l~~ 300 (380)
.|+.+.+.++|-|||.+.+.+... +.+.+.+.|++...++.+ .|+++||+||||||++++
T Consensus 345 ~DLr~pLI~gegrkaRll~TigVsRGlGDH~Lkv~dsnl~iKPFLssvPeV~V~dl~q~e~~~DdVvilatDGLWDVlSn 424 (493)
T KOG1323|consen 345 EDLRFPLISGEGRKARLLATIGVSRGLGDHHLKVVDSNLSIKPFLSSVPEVRVYDLRQYEHLTDDVVILATDGLWDVLSN 424 (493)
T ss_pred hcCCcceecccchhhhhhhhheeccccCcceeeeecCCcccchhhhcCCeeEEEehhhhccCCCcEEEEecCchhhhccc
Confidence 034456779999999999987754 467889999999888762 345899999999999999
Q ss_pred HHHHHHHHHHHhcC--CCHH---HHHHHHHHHHHh-------------CCCCCCeEEEEEEcCCCC
Q 016914 301 QNAVDFARRRLQEH--NDPV---MCSKDLVDEALK-------------RKSGDNLAVVVVCFQSQP 348 (380)
Q Consensus 301 ~ei~~~i~~~l~~~--~~~~---~~a~~Lv~~A~~-------------~g~~DNiTvivv~~~~~~ 348 (380)
+|+..+++..+... .||. .+|+.|+..|.. .++.|||||.||.+.-..
T Consensus 425 eeva~~Vrs~L~~~dp~Dp~RYt~aaqdlva~arg~~k~rgWr~~n~~lgSgDDIsVfVIPL~~~~ 490 (493)
T KOG1323|consen 425 EEVALIVRSFLPSTDPADPSRYTQAAQDLVAAARGQQKDRGWRMNNGGLGSGDDISVFVIPLKYCA 490 (493)
T ss_pred HHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHhcCccCCCceeccCCCcCCCCceEEEEEeccCCC
Confidence 99999999988643 3443 678888888742 257999999999986543
No 13
>KOG1379 consensus Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=99.90 E-value=1.9e-22 Score=186.55 Aligned_cols=207 Identities=18% Similarity=0.287 Sum_probs=142.2
Q ss_pred CCCCcceEEeccccccccCcCCCCCCceEEEEECCCCChh-----HHHHHHhhhh---HHHhcCCCChHHHHHHHHHHHH
Q 016914 92 PTMEDVFLCVDNFMSDYGLKNLIDEPSAFYGMFDGHGGKH-----AADFASCHLP---RFITEDEEFPQEIERVVASAFL 163 (380)
Q Consensus 92 ~~nED~~~~~~~~~~~~~~~~~~~~~~~~~~V~DG~GG~~-----~a~~as~~l~---~~l~~~~~~~~~~~~~l~~af~ 163 (380)
...||+|++..+ ....+.|||||+|||. .+.|..+.+. +.+.+....+.++...|..++.
T Consensus 89 ~~GEDa~Fvss~------------~~~~v~GVADGVGGWa~~GiDpg~fS~eLM~~ce~~v~~~~~~~~~P~~lL~~ay~ 156 (330)
T KOG1379|consen 89 KGGEDAWFVSSN------------PHAIVMGVADGVGGWAEYGIDPGAFSRELMSNCERLVQNSDFNPSDPVNLLEKAYA 156 (330)
T ss_pred CCCCcceeeccC------------cccceEEEccccchHhhcCcCHHHHHHHHHHHHHHHhcccccCCCChHHHHHHHHH
Confidence 458999998765 5677999999999876 4445444332 3333333344466666766654
Q ss_pred HHhHHHHHHcccccccccCcceEEEEEe--CCeEEEEecCCceEEEEeCCcceecCCCCCCCChHHHHHHHHcCCEEecc
Q 016914 164 QTDSAFAEACSLDAALASGTTALAALVF--GRRLVVANVGDCRAVLCRRGKAIEMSRDHKPVCSKEKKRIEASGGYVYDG 241 (380)
Q Consensus 164 ~~~~~l~~~~~~~~~~~~GtT~~~~~i~--~~~l~vanvGDSRa~l~r~g~~~~lT~dH~~~~~~e~~Ri~~~gg~v~~~ 241 (380)
++- +. +...-.+||++++.+. +++|++||+|||-..++|+|++++-|..+..
T Consensus 157 ~l~----~~---~~~~vGSSTAcI~~l~~~~~~Lh~aNLGDSGF~VvR~G~vv~~S~~Q~H------------------- 210 (330)
T KOG1379|consen 157 ELK----SQ---KVPIVGSSTACILALDRENGKLHTANLGDSGFLVVREGKVVFRSPEQQH------------------- 210 (330)
T ss_pred HHh----hc---CCCCCCcceeeeeeeecCCCeEEEeeccCcceEEEECCEEEEcCchhee-------------------
Confidence 432 22 1112267888888887 7899999999999999999999998877552
Q ss_pred cccCeeecccccCCCccccCCCCCCCCCccCcceEEEEcCCCCeEEEEEcCCccCCCChHHHHHHHHHHHh-cCCCHHHH
Q 016914 242 YLNGQLNVARALGDWHVEGMKGADGGPLSAEPELMSTKLTEEDEFLIIACDGVWDVFMSQNAVDFARRRLQ-EHNDPVMC 320 (380)
Q Consensus 242 ~~~g~l~~tralGd~~~k~~~~~~g~~~~~~p~i~~~~l~~~d~~LVL~SDGl~d~l~~~ei~~~i~~~l~-~~~~~~~~ 320 (380)
+.|-.+.++ ++-..+. ... ....-..+.+.+++.++| +|||+||||||+|.+++|.+++..... ...++|..
T Consensus 211 ~FN~PyQLs--~~p~~~~---~~~-~d~p~~ad~~~~~v~~GD-vIilATDGlfDNl~e~~Il~il~~~~~~~~~~lq~~ 283 (330)
T KOG1379|consen 211 YFNTPYQLS--SPPEGYS---SYI-SDVPDSADVTSFDVQKGD-VIILATDGLFDNLPEKEILSILKGLDARGNLDLQVT 283 (330)
T ss_pred ccCCceeec--cCCcccc---ccc-cCCccccceEEEeccCCC-EEEEecccccccccHHHHHHHHHHhhccccccHHHH
Confidence 111111111 1111110 000 012334567889999999 666999999999999999999887655 66789999
Q ss_pred HHHHHHHHHhC-----------------------CCCCCeEEEEEE
Q 016914 321 SKDLVDEALKR-----------------------KSGDNLAVVVVC 343 (380)
Q Consensus 321 a~~Lv~~A~~~-----------------------g~~DNiTvivv~ 343 (380)
|+.|++.|.+. |..||||+||..
T Consensus 284 A~~ia~~Ar~ls~d~~~~SPFA~~Ar~~g~~~~gGK~DdITvvls~ 329 (330)
T KOG1379|consen 284 AQKIAEKARELSRDPKFQSPFAQAAREHGFKAYGGKPDDITVVLSS 329 (330)
T ss_pred HHHHHHHHHHhccCcCcCChHHHHHHHhCcccCCCCcccEEEEEec
Confidence 99999999632 459999999875
No 14
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.90 E-value=4.6e-23 Score=212.49 Aligned_cols=242 Identities=29% Similarity=0.462 Sum_probs=206.8
Q ss_pred eeeEEeccccCCCCCCcceEEeccccccccCcCCCCCCceEEEEECCCCChhHHHHHHhhhhHHHhcCCCChHHHHHHHH
Q 016914 80 VRSGACADIGLRPTMEDVFLCVDNFMSDYGLKNLIDEPSAFYGMFDGHGGKHAADFASCHLPRFITEDEEFPQEIERVVA 159 (380)
Q Consensus 80 ~~~~~~s~~G~R~~nED~~~~~~~~~~~~~~~~~~~~~~~~~~V~DG~GG~~~a~~as~~l~~~l~~~~~~~~~~~~~l~ 159 (380)
|.+|.+-..|.|.++--+...+.+| -+.+.+.|+.+||-+......+...++..++.++.....+-.+.|+
T Consensus 522 ~t~Gv~~~~gqrnk~c~~~~~v~nf---------~~~~~a~~g~~dgs~n~~v~~~vq~~ma~~L~eev~~~~~et~~mr 592 (1081)
T KOG0618|consen 522 WTYGVAGVSGQRNKVCSRAVWVENF---------FLNPQATFGCFDGSRNSRVLSLVQDTMASYLAEEVQLYGNETEQMR 592 (1081)
T ss_pred eeeccchhcccccchhhhhhhhhhc---------ccCCcceEEEEcCCCchhHHHHHHHHHHHHHHHHHHhccChHHHHH
Confidence 4578888889888776665555554 3578889999999999999999999999988775544444455599
Q ss_pred HHHHHHhHHHHHHcccccccccCcceEEEEEeCC--------eEEEEecCCceEEEEeCCcceecCCCC-CCCChHHHHH
Q 016914 160 SAFLQTDSAFAEACSLDAALASGTTALAALVFGR--------RLVVANVGDCRAVLCRRGKAIEMSRDH-KPVCSKEKKR 230 (380)
Q Consensus 160 ~af~~~~~~l~~~~~~~~~~~~GtT~~~~~i~~~--------~l~vanvGDSRa~l~r~g~~~~lT~dH-~~~~~~e~~R 230 (380)
.+|...++++....+. .|..++.+.|..+ ++.+||+|+|.++++++|+-.++|+-. ...+++|.+|
T Consensus 593 ~~fl~~~rklg~~g~~-----lg~~~~~~~i~~d~~~~asS~~l~~Anvg~c~avls~ng~~~p~t~~~~~~v~~eE~~R 667 (1081)
T KOG0618|consen 593 NTFLRLNRKLGEEGQV-----LGGSVVLCQIVEDSLSPASSKTLFAANVGTCMAVLSRNGKPLPTTRSPMLEVDREEYKR 667 (1081)
T ss_pred HHHHHHhhhhhhhhcc-----ccchhhheeecccccCcccchhhhHhhhccchhhhhhcCCcCcccccccccCCHHHHHH
Confidence 9999999999766544 4556666666533 789999999999999999999988877 4459999999
Q ss_pred HHHcCCEEe-cccccCeeecccccCCCccccCCCCCCCCCccCcceEEEEcCCCCeEEEEEcCCccCCCChHHHHHHHHH
Q 016914 231 IEASGGYVY-DGYLNGQLNVARALGDWHVEGMKGADGGPLSAEPELMSTKLTEEDEFLIIACDGVWDVFMSQNAVDFARR 309 (380)
Q Consensus 231 i~~~gg~v~-~~~~~g~l~~tralGd~~~k~~~~~~g~~~~~~p~i~~~~l~~~d~~LVL~SDGl~d~l~~~ei~~~i~~ 309 (380)
|+..+|+|. +++++|....||++|.....+ .+.+.|+|..+.|++.|+|||+++-+||++|+-+++++.+|
T Consensus 668 I~~~~g~i~ed~k~ngvt~~tR~iG~~~l~P-------~v~p~Phv~~~~Lt~qdE~LIvgn~~lW~~Lsid~a~~~vR- 739 (1081)
T KOG0618|consen 668 IVDSKGFITEDNKLNGVTSSTRAIGPFSLFP-------HVLPDPHVSVVILTEQDEFLIVGNKQLWSVLSIDTAVDAVR- 739 (1081)
T ss_pred HHHhcCeecCCCeeeceeeeeeecccccccc-------cccCCCceeeEecccCceEEEEcchHHhhhccHHHHHHHHh-
Confidence 999999998 999999999999999987665 58899999999999999999999999999999999999977
Q ss_pred HHhcCCCHHHHHHHHHHHHHhCCCCCCeEEEEEEcCC
Q 016914 310 RLQEHNDPVMCSKDLVDEALKRKSGDNLAVVVVCFQS 346 (380)
Q Consensus 310 ~l~~~~~~~~~a~~Lv~~A~~~g~~DNiTvivv~~~~ 346 (380)
+..+|-.+|++|++.|...|..||++|+||++..
T Consensus 740 ---n~~dpL~AAkKL~d~AqSYgc~~nv~vlVv~l~~ 773 (1081)
T KOG0618|consen 740 ---NVEDPLLAAKKLCDLAQSYGCAENVSVLVVRLNH 773 (1081)
T ss_pred ---cCCchHHHHHHHHHHHHhcccccCeeEEEEEeec
Confidence 4779999999999999999999999999999863
No 15
>PF13672 PP2C_2: Protein phosphatase 2C; PDB: 2JFT_A 2JFS_A 2V06_A 2JFR_A 2J86_A 2J82_A 2Y09_A 2XZV_A 2CM1_A 1TXO_B ....
Probab=99.81 E-value=1.9e-19 Score=163.78 Aligned_cols=181 Identities=22% Similarity=0.240 Sum_probs=97.6
Q ss_pred eccccCCCCCCcceEEeccccccccCcCCCCCCceEEEEECCCCChhHHHHHHhhhhHH----HhcCCCChHH--HHHHH
Q 016914 85 CADIGLRPTMEDVFLCVDNFMSDYGLKNLIDEPSAFYGMFDGHGGKHAADFASCHLPRF----ITEDEEFPQE--IERVV 158 (380)
Q Consensus 85 ~s~~G~R~~nED~~~~~~~~~~~~~~~~~~~~~~~~~~V~DG~GG~~~a~~as~~l~~~----l~~~~~~~~~--~~~~l 158 (380)
.+++|.+..|||++.+... .+..+++|+||+||...++.+++.+.+. +.+....... ..+.+
T Consensus 3 ~sh~~~~~~nqD~~~~~~~------------~~~~~~aVaDG~g~~~~~~~aa~~av~~~~~~l~~~~~~~~~~~~~~~~ 70 (212)
T PF13672_consen 3 RSHRGRGAPNQDAFGIRTD------------DDGNLAAVADGVGGSPYGEEAAQLAVETFINYLKKLLSQESPSSIEALI 70 (212)
T ss_dssp ----TTSSS--EEEEEE-T------------CCTCEEEEEEEESTTTHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHH
T ss_pred ccccCCCCCCCCCEEeeeC------------CCCEEEEEEECCCCCchhHHHHHHHHHHHHHHHHhcccccchHHHHHHH
Confidence 5788999999999986543 5667779999999887776666555544 4444333322 22233
Q ss_pred HHHHHHHhHHH----HHHcccccccccCcceEEEEEeCCeEEEEecCCceEEE-EeCCcceecCCCCCCCChHHHHHHHH
Q 016914 159 ASAFLQTDSAF----AEACSLDAALASGTTALAALVFGRRLVVANVGDCRAVL-CRRGKAIEMSRDHKPVCSKEKKRIEA 233 (380)
Q Consensus 159 ~~af~~~~~~l----~~~~~~~~~~~~GtT~~~~~i~~~~l~vanvGDSRa~l-~r~g~~~~lT~dH~~~~~~e~~Ri~~ 233 (380)
+.+...+...+ ............+||++++++.++.++++|+||||+|+ .++|++..++.||+. +..
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~tTl~~~v~~~~~~~~~~iGD~~i~~~~~~g~~~~l~~~~~~----~~~---- 142 (212)
T PF13672_consen 71 RAIKKEILSIVRAFQSAKQADLELRDYGTTLLALVIDPDKVYIFNIGDSRIYVIRRNGEIQQLTDDHSG----EYP---- 142 (212)
T ss_dssp HHHHHHHHHHH----HHHHHSGGGTT-EE-EEEEEEETTEEEEEEESS-EEEEEEETTEEEE-S---BH----HHH----
T ss_pred HHHHHHHHHHhhhhhhhhhccccccccCceEEEEEEECCEEEEEEECCCeEEEEECCCEEEEcCCCccc----hhh----
Confidence 33333332221 01111122334899999999999999999999999975 489999999999972 111
Q ss_pred cCCEEecccccCeeecccccCCCccccCCCCCCCCCccCcceEEEEcCCCCeEEEEEcCCccCCCChHH-HHHHHHHHH
Q 016914 234 SGGYVYDGYLNGQLNVARALGDWHVEGMKGADGGPLSAEPELMSTKLTEEDEFLIIACDGVWDVFMSQN-AVDFARRRL 311 (380)
Q Consensus 234 ~gg~v~~~~~~g~l~~tralGd~~~k~~~~~~g~~~~~~p~i~~~~l~~~d~~LVL~SDGl~d~l~~~e-i~~~i~~~l 311 (380)
..+..+... ......++..+++.++|.|| |||||||+.+...+ +..++...+
T Consensus 143 --------------~~~~~~~~~-----------~~~~~~~~~~~~~~~~d~il-L~SDG~~~~l~~~~~~~~~l~~~~ 195 (212)
T PF13672_consen 143 --------------NQTRSLTGD-----------DPEPDVQYGSIPLEEGDVIL-LCSDGVWDNLRSYEDLEQFLKDLW 195 (212)
T ss_dssp --------------HCTTSCCHH-----------CCCTETEEEEEE--TT-EEE-EE-HHHHTTS-HHHHHHHH-----
T ss_pred --------------hhhhccCcc-----------ccccCCeEEEEEcCCCCEEE-EECcCccccCCCHHHHHHHhhhcc
Confidence 112222221 01222356667778888555 99999999998655 556655543
No 16
>smart00331 PP2C_SIG Sigma factor PP2C-like phosphatases.
Probab=99.75 E-value=8.6e-17 Score=144.08 Aligned_cols=175 Identities=20% Similarity=0.154 Sum_probs=128.5
Q ss_pred CCCCcceEEeccccccccCcCCCCCCceEEEEECCCCChhHHHHHHhhhhHHHhcCCCChHHHHHHHHHHHHHHhHHHHH
Q 016914 92 PTMEDVFLCVDNFMSDYGLKNLIDEPSAFYGMFDGHGGKHAADFASCHLPRFITEDEEFPQEIERVVASAFLQTDSAFAE 171 (380)
Q Consensus 92 ~~nED~~~~~~~~~~~~~~~~~~~~~~~~~~V~DG~GG~~~a~~as~~l~~~l~~~~~~~~~~~~~l~~af~~~~~~l~~ 171 (380)
....|.|.+... +.+..+|+|+||||+...|.+++..+...+.+...... .+.+.+..+|+.+..
T Consensus 15 ~~~GD~~~~~~~-----------~~~~~~~~v~Dg~G~G~~aa~~s~~~~~~~~~~~~~~~----~~~~~l~~~n~~l~~ 79 (193)
T smart00331 15 QVGGDFYDVVKL-----------PEGRLLIAIADVMGKGLAAALAMSMARSALRTLLSEGI----SLSQILERLNRAIYE 79 (193)
T ss_pred hcCccEEEEEEe-----------CCCeEEEEEEecCCCChHHHHHHHHHHHHHHHHhhcCC----CHHHHHHHHHHHHHh
Confidence 457788876543 35578999999999888888888888877755322211 245566777777766
Q ss_pred HcccccccccCcceEEEEE--eCCeEEEEecCCceEEEEe-CCcceecCCCCCCCChHHHHHHHHcCCEEecccccCeee
Q 016914 172 ACSLDAALASGTTALAALV--FGRRLVVANVGDCRAVLCR-RGKAIEMSRDHKPVCSKEKKRIEASGGYVYDGYLNGQLN 248 (380)
Q Consensus 172 ~~~~~~~~~~GtT~~~~~i--~~~~l~vanvGDSRa~l~r-~g~~~~lT~dH~~~~~~e~~Ri~~~gg~v~~~~~~g~l~ 248 (380)
.. ....++|++++++ ..++++++|+||+|+|+++ ++..++.+.+.
T Consensus 80 ~~----~~~~~~T~~~~~id~~~~~l~~~~~Gd~~~~~~~~~~~~~~~~~~~---------------------------- 127 (193)
T smart00331 80 NG----EDGMFATLFLALYDFAGGTLSYANAGHSPPYLLRADGGLVEDLDDL---------------------------- 127 (193)
T ss_pred cC----CCCcEEEEEEEEEECCCCEEEEEeCCCCceEEEECCCCeEEEcCCC----------------------------
Confidence 52 1237999999998 5779999999999999998 66665555542
Q ss_pred cccccCCCccccCCCCCCCCCccCcceEEEEcCCCCeEEEEEcCCccCCCChHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 016914 249 VARALGDWHVEGMKGADGGPLSAEPELMSTKLTEEDEFLIIACDGVWDVFMSQNAVDFARRRLQEHNDPVMCSKDLVDEA 328 (380)
Q Consensus 249 ~tralGd~~~k~~~~~~g~~~~~~p~i~~~~l~~~d~~LVL~SDGl~d~l~~~ei~~~i~~~l~~~~~~~~~a~~Lv~~A 328 (380)
+..+|.. ...+++...+.+.++|. |+|+|||||+.+..+++.+++.+.. ..++++.++++++.+
T Consensus 128 -~~~lG~~------------~~~~~~~~~~~l~~gd~-l~l~TDGl~e~~~~~~l~~~l~~~~--~~~~~~~~~~i~~~~ 191 (193)
T smart00331 128 -GAPLGLE------------PDVEVDVRELTLEPGDL-LLLYTDGLTEARNPERLEELLEELL--GSPPAEIAQRILEEL 191 (193)
T ss_pred -CceeeeC------------CCCcceeEEEeeCCCCE-EEEECCCccccCChHHHHHHHHHhc--CCCHHHHHHHHHHHH
Confidence 2345532 23346678889999995 5599999999999988888877643 457888888888776
Q ss_pred H
Q 016914 329 L 329 (380)
Q Consensus 329 ~ 329 (380)
.
T Consensus 192 ~ 192 (193)
T smart00331 192 L 192 (193)
T ss_pred h
Confidence 4
No 17
>TIGR02865 spore_II_E stage II sporulation protein E. Stage II sporulation protein E (SpoIIE) is a multiple membrane spanning protein with two separable functions. It plays a role in the switch to polar cell division during sporulation. By means of it protein phosphatase activity, located in the C-terminal region, it activates sigma-F. All proteins that score above the trusted cutoff to this model are found in endospore-forming Gram-positive bacteria. Surprisingly, a sequence from the Cyanobacterium-like (and presumably non-spore-forming) photosynthesizer Heliobacillus mobilis is homologous, and scores between the trusted and noise cutoffs.
Probab=99.64 E-value=8.2e-15 Score=156.03 Aligned_cols=194 Identities=19% Similarity=0.191 Sum_probs=136.1
Q ss_pred cccCCCCCCcceEEeccccccccCcCCCCCCceEEEEECCCCChhHHHHHHhhhhHHHhcC--CCChHHHHHHHHHHHHH
Q 016914 87 DIGLRPTMEDVFLCVDNFMSDYGLKNLIDEPSAFYGMFDGHGGKHAADFASCHLPRFITED--EEFPQEIERVVASAFLQ 164 (380)
Q Consensus 87 ~~G~R~~nED~~~~~~~~~~~~~~~~~~~~~~~~~~V~DG~GG~~~a~~as~~l~~~l~~~--~~~~~~~~~~l~~af~~ 164 (380)
.++.+..+.|.|.+... +++...++|+||+|....|..++..+.+.+.+. ..++ ...++..
T Consensus 560 ~k~g~~vsGD~y~~~~l-----------~~g~~~~~laDGmGhG~~Aa~~S~~~~~ll~~~~~~g~~------~~~ai~~ 622 (764)
T TIGR02865 560 AKDGELVSGDSYSFGKL-----------SAGKYAVAISDGMGSGPEAAQESSACVRLLEKFLESGFD------REVAIKT 622 (764)
T ss_pred cCCCCcccCceEEEEEE-----------CCCEEEEEEEcccCCCHHHHHHHHHHHHHHHHHHHcCCC------HHHHHHH
Confidence 34457789999987653 355678999999996666666666665555331 1122 2446666
Q ss_pred HhHHHHHHcccccccccCcceEEEEEe--CCeEEEEecCCceEEEEeCCcceecCCCCCCCChHHHHHHHHcCCEEeccc
Q 016914 165 TDSAFAEACSLDAALASGTTALAALVF--GRRLVVANVGDCRAVLCRRGKAIEMSRDHKPVCSKEKKRIEASGGYVYDGY 242 (380)
Q Consensus 165 ~~~~l~~~~~~~~~~~~GtT~~~~~i~--~~~l~vanvGDSRa~l~r~g~~~~lT~dH~~~~~~e~~Ri~~~gg~v~~~~ 242 (380)
+|..+...... .+.+|+.+++++ .+++.++|+|+++.|+.|++++.+++..+.|
T Consensus 623 lN~~L~~~~~~----~~faTl~l~~IDl~~g~~~~~~aG~~p~~i~r~~~v~~i~s~~lP-------------------- 678 (764)
T TIGR02865 623 VNSILSLRSTD----EKFSTLDLSVIDLYTGQAEFVKVGAVPSFIKRGAKVEVIRSSNLP-------------------- 678 (764)
T ss_pred HHHHHHhCCCC----CeEEEEEEEEEECCCCeEEEEecCCCceEEEECCEEEEecCCCce--------------------
Confidence 77776543211 268999999996 6799999999999999999988888665442
Q ss_pred ccCeeecccccCCCccccCCCCCCCCCccCcceEEEEcCCCCeEEEEEcCCccCCCChHH-HHHHHHHHHh--cCCCHHH
Q 016914 243 LNGQLNVARALGDWHVEGMKGADGGPLSAEPELMSTKLTEEDEFLIIACDGVWDVFMSQN-AVDFARRRLQ--EHNDPVM 319 (380)
Q Consensus 243 ~~g~l~~tralGd~~~k~~~~~~g~~~~~~p~i~~~~l~~~d~~LVL~SDGl~d~l~~~e-i~~~i~~~l~--~~~~~~~ 319 (380)
+|- ....+++..+.++.++| +|||+|||+||..++.+ -.+.+.+.+. ...+|++
T Consensus 679 ----------lGi------------l~~~~~~~~~~~L~~GD-~Lll~SDGv~E~~~~~~~~~~~l~~~l~~~~~~~p~e 735 (764)
T TIGR02865 679 ----------IGI------------LDEVDVELVRKKLKNGD-LIVMVSDGVLEGEKEVEGKVLWLVRKLKETNTNDPEE 735 (764)
T ss_pred ----------eEe------------ccCCccceEEEEeCCCC-EEEEECCCCCcCCcccccHHHHHHHHHHhcCCCCHHH
Confidence 221 11235667788999999 56699999999886533 1122333333 3468999
Q ss_pred HHHHHHHHHHhCC---CCCCeEEEEEEc
Q 016914 320 CSKDLVDEALKRK---SGDNLAVVVVCF 344 (380)
Q Consensus 320 ~a~~Lv~~A~~~g---~~DNiTvivv~~ 344 (380)
.++.|++++.+.. ..||+|++++++
T Consensus 736 la~~Il~~a~~~~~~~~~DD~Tvlvirv 763 (764)
T TIGR02865 736 IAEYLLEKAKELRSGKIKDDMTVIVAKV 763 (764)
T ss_pred HHHHHHHHHHHhcCCCCCCCeEEEEEEe
Confidence 9999999998643 489999999986
No 18
>PF07228 SpoIIE: Stage II sporulation protein E (SpoIIE); InterPro: IPR001932 This domain is found in protein phosphatase 2C, as well as other proteins eg. pyruvate dehydrogenase (lipoamide)-phosphatase (3.1.3.43 from EC), adenylate cyclase (4.6.1.1 from EC) and some bacterial stage II sporulation E proteins (3.1.3.16 from EC). Protein phosphatase 2C (PP2C) is one of the four major classes of mammalian serine/threonine specific protein phosphatases (3.1.3.16 from EC). PP2C [] is a monomeric enzyme of about 42 Kd which shows broad substrate specificity and is dependent on divalent cations (mainly manganese and magnesium) for its activity. Its exact physiological role is still unclear. Three isozymes are currently known in mammals: PP2C-alpha, -beta and -gamma. In yeast, there are at least four PP2C homologs: phosphatase PTC1 [], which has weak tyrosine phosphatase activity in addition to its activity on serines, phosphatases PTC2 and PTC3, and hypothetical protein YBR125c. Isozymes of PP2C are also known from Arabidopsis thaliana (ABI1, PPH1), Caenorhabditis elegans (FEM-2, F42G9.1, T23F11.1), Leishmania chagasi and Paramecium tetraurelia. In A. thaliana, the kinase associated protein phosphatase (KAPP) [] is an enzyme that dephosphorylates the Ser/Thr receptor-like kinase RLK5 and which contains a C-terminal PP2C domain. PP2C does not seem to be evolutionary related to the main family of serine/ threonine phosphatases: PP1, PP2A and PP2B. However, it is significantly similar to the catalytic subunit of pyruvate dehydrogenase phosphatase 3.1.3.43 from EC (PDPC) [], which catalyzes dephosphorylation and concomitant reactivation of the alpha subunit of the E1 component of the pyruvate dehydrogenase complex. PDPC is a mitochondrial enzyme and, like PP2C, is magnesium-dependent.; GO: 0003824 catalytic activity; PDB: 3KE6_B 3ZT9_A 3RNR_A 3EQ2_A 3F7A_B 3F79_A 3ES2_B 3PU9_B 3T91_B 3T9Q_B ....
Probab=99.50 E-value=1.5e-12 Score=116.24 Aligned_cols=178 Identities=18% Similarity=0.177 Sum_probs=112.7
Q ss_pred CCceEEEEECCCCChhHHHHHHhhhhHHHhcCCCChHHHHHHHHHHHHHHhHHHHHHcccccccccCcceEEEEEe--CC
Q 016914 116 EPSAFYGMFDGHGGKHAADFASCHLPRFITEDEEFPQEIERVVASAFLQTDSAFAEACSLDAALASGTTALAALVF--GR 193 (380)
Q Consensus 116 ~~~~~~~V~DG~GG~~~a~~as~~l~~~l~~~~~~~~~~~~~l~~af~~~~~~l~~~~~~~~~~~~GtT~~~~~i~--~~ 193 (380)
.+..++.|+|++|..-.|.+.+..+...+......... ..+.+..+|+.+....... ...+|+++++++ .+
T Consensus 2 ~~~~~~~v~D~~GhG~~aa~~~~~~~~~~~~~~~~~~~----p~~~l~~ln~~l~~~~~~~---~~~~t~~~~~~d~~~~ 74 (193)
T PF07228_consen 2 DGRYFIIVGDVSGHGVSAALLSAALASAIRELLDEGLD----PEELLEALNRRLYRDLKGD---NRYATACYAIIDPETG 74 (193)
T ss_dssp TTEEEEEEEEESSSSHHHHHHHHHHHHHHHHHHHTTTS----HHHHHHHHHHHHHHHTTTT---STTEEEEEEEEETTTT
T ss_pred CCEEEEEEEEecCCCHHHHHHHHHHHHHHHHHHHcCCC----HHHHHHHHHHHHHHHhhhc---cccceEEEEEecccce
Confidence 45678999999995555555555555444321111111 3456666777775543322 267888888876 56
Q ss_pred eEEEEecCCceEEEEeCC--cceecCCCCCCCChHHHHHHHHcCCEEecccccCeeecccccCCCccccCCCCCCCCCcc
Q 016914 194 RLVVANVGDCRAVLCRRG--KAIEMSRDHKPVCSKEKKRIEASGGYVYDGYLNGQLNVARALGDWHVEGMKGADGGPLSA 271 (380)
Q Consensus 194 ~l~vanvGDSRa~l~r~g--~~~~lT~dH~~~~~~e~~Ri~~~gg~v~~~~~~g~l~~tralGd~~~k~~~~~~g~~~~~ 271 (380)
+++++|+|++++++++++ ....+..... .+|-. ...
T Consensus 75 ~l~~~~aG~~~~l~~~~~~~~~~~~~~~~~------------------------------~lG~~------------~~~ 112 (193)
T PF07228_consen 75 TLTYANAGHPPPLLLRPGGREIEQLESEGP------------------------------PLGIF------------EDI 112 (193)
T ss_dssp EEEEEEESSSEEEEEETTCTEEEEETCSSB------------------------------BCSSS------------CTT
T ss_pred EEEEeCCCCCCEEEEeccccceeecccCcc------------------------------ceeee------------ccc
Confidence 899999999999999983 3333322222 13321 123
Q ss_pred CcceEEEEcCCCCeEEEEEcCCccCCCChHH-------HHHHHHHHHhcCCCHHHHHHHHHHHHHhC---CCCCCeEEEE
Q 016914 272 EPELMSTKLTEEDEFLIIACDGVWDVFMSQN-------AVDFARRRLQEHNDPVMCSKDLVDEALKR---KSGDNLAVVV 341 (380)
Q Consensus 272 ~p~i~~~~l~~~d~~LVL~SDGl~d~l~~~e-------i~~~i~~~l~~~~~~~~~a~~Lv~~A~~~---g~~DNiTviv 341 (380)
+....++++.++|. |+|+||||+|....+. +.+++.+. ...++++.++.|++.+.+. ...||+|+++
T Consensus 113 ~~~~~~~~l~~gd~-l~l~TDGl~e~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~l~~~~~~~~~~~~~DD~tvl~ 189 (193)
T PF07228_consen 113 DYQEQEIQLEPGDR-LLLYTDGLFEALNEDGEFFGEERLLELLDEN--RGLSPQEIIDALLEAIDRFGKGPLRDDITVLV 189 (193)
T ss_dssp CEEEEEEE--TTEE-EEEECHHHCTTTCHHCHHCCCHHHHHHHHCH--TTS-HHHHHHHHHHHHHHHTTSSTSS-EEEEE
T ss_pred cccceEEEeccccE-EEEeCCChhhccCCccchhHHHHHHHHHhhc--cCCCHHHHHHHHHHHHHHhcCCCCCCceEEEE
Confidence 45566788999995 6699999999984433 23333221 3567999999999999873 5789999999
Q ss_pred EEcC
Q 016914 342 VCFQ 345 (380)
Q Consensus 342 v~~~ 345 (380)
++++
T Consensus 190 ~~~~ 193 (193)
T PF07228_consen 190 IRRQ 193 (193)
T ss_dssp EEE-
T ss_pred EEEC
Confidence 9874
No 19
>COG2208 RsbU Serine phosphatase RsbU, regulator of sigma subunit [Signal transduction mechanisms / Transcription]
Probab=98.47 E-value=1.6e-05 Score=78.62 Aligned_cols=185 Identities=17% Similarity=0.172 Sum_probs=117.2
Q ss_pred CCCcceEEeccccccccCcCCCCCCceEEEEECCCC-ChhHHHHHHhhhh---HHHhcC-CCChHHHHHHHHHHHHHHhH
Q 016914 93 TMEDVFLCVDNFMSDYGLKNLIDEPSAFYGMFDGHG-GKHAADFASCHLP---RFITED-EEFPQEIERVVASAFLQTDS 167 (380)
Q Consensus 93 ~nED~~~~~~~~~~~~~~~~~~~~~~~~~~V~DG~G-G~~~a~~as~~l~---~~l~~~-~~~~~~~~~~l~~af~~~~~ 167 (380)
..-|.|-+... +....+++|.|..| |-.++-. ..... +.+... ...+ ...+..+|+
T Consensus 161 vGGD~yd~~~~-----------~~~~~~i~I~DvsG~Gv~aal~-m~~~~~~~~~~~~~~~~~p-------~~~l~~~n~ 221 (367)
T COG2208 161 VGGDYYDFIQL-----------GEKRLRIGIGDVSGKGVPAALL-MLMPKLALRLLLESGPLDP-------ADVLETLNR 221 (367)
T ss_pred cCCceEEEEEE-----------CCcEEEEEEEeccCCCHHHHHH-HHHHHHHHHHhhhcccCCH-------HHHHHHHHH
Confidence 56677766543 24688999999999 6655554 22222 222222 1222 234555566
Q ss_pred HHHHHcccccccccCcceEEEEEe--CCeEEEEecCCceEEEEeCCcc---eecCCCCCCCChHHHHHHHHcCCEEeccc
Q 016914 168 AFAEACSLDAALASGTTALAALVF--GRRLVVANVGDCRAVLCRRGKA---IEMSRDHKPVCSKEKKRIEASGGYVYDGY 242 (380)
Q Consensus 168 ~l~~~~~~~~~~~~GtT~~~~~i~--~~~l~vanvGDSRa~l~r~g~~---~~lT~dH~~~~~~e~~Ri~~~gg~v~~~~ 242 (380)
.+....... +-+|+..++++ .+.+.++|+|---+++++.+.. ..++.
T Consensus 222 ~~~~~~~~~----~f~T~~~~~~d~~~~~l~y~~aGH~p~~i~~~~~~~~~~~l~~------------------------ 273 (367)
T COG2208 222 VLKQNLEED----MFVTLFLGVYDLDSGELTYSNAGHEPALILSADGEIEVEDLTA------------------------ 273 (367)
T ss_pred HHHhcccCC----cEEEEEEEEEeccCCEEEEeeCCCCCeeEEEcCCCceeEEccC------------------------
Confidence 666543322 56777777776 5799999999998888876432 22211
Q ss_pred ccCeeecccccCCCccccCCCCCCCCCccCcceEEEEcCCCCeEEEEEcCCccCC-------CChHHHHHHHHHHHhcCC
Q 016914 243 LNGQLNVARALGDWHVEGMKGADGGPLSAEPELMSTKLTEEDEFLIIACDGVWDV-------FMSQNAVDFARRRLQEHN 315 (380)
Q Consensus 243 ~~g~l~~tralGd~~~k~~~~~~g~~~~~~p~i~~~~l~~~d~~LVL~SDGl~d~-------l~~~ei~~~i~~~l~~~~ 315 (380)
...++|.. ....+.+...++.++| .|||.|||+.+. +..+...+++.+ ....
T Consensus 274 ------~g~piG~~------------~~~~~~~~~~~l~~gd-~lvl~tDGv~Ea~~~~~~~~~~~~~~~~~~~--~~~~ 332 (367)
T COG2208 274 ------LGLPIGLL------------PDYQYEVASLQLEPGD-LLVLYTDGVTEARNSDGEFFGLERLLKILGR--LLGQ 332 (367)
T ss_pred ------CCceeeec------------CCccchheeEEecCCC-EEEEEcCCeeeeecCCccEecHHHHHHHHHH--HhCC
Confidence 12333432 3445666778889988 677999999993 455556666554 2456
Q ss_pred CHHHHHHHHHHHHHh----CCCCCCeEEEEEEcC
Q 016914 316 DPVMCSKDLVDEALK----RKSGDNLAVVVVCFQ 345 (380)
Q Consensus 316 ~~~~~a~~Lv~~A~~----~g~~DNiTvivv~~~ 345 (380)
++++.++.+++.... ..-.||+|++++++.
T Consensus 333 ~~~e~~~~i~~~l~~~~~~~~~~DDiTll~lk~~ 366 (367)
T COG2208 333 PAEEILEAILESLEELQGDQIQDDDITLLVLKVK 366 (367)
T ss_pred CHHHHHHHHHHHHHHhhCCccccCceEEEEEEec
Confidence 788888888777754 335788999999975
No 20
>PRK10693 response regulator of RpoS; Provisional
Probab=65.00 E-value=42 Score=31.98 Aligned_cols=50 Identities=10% Similarity=0.068 Sum_probs=33.3
Q ss_pred HHHHHHHhHHHHHHcccccccccCcceEEEEEe--CCeEEEEecCCceEEEEeCCcc
Q 016914 159 ASAFLQTDSAFAEACSLDAALASGTTALAALVF--GRRLVVANVGDCRAVLCRRGKA 213 (380)
Q Consensus 159 ~~af~~~~~~l~~~~~~~~~~~~GtT~~~~~i~--~~~l~vanvGDSRa~l~r~g~~ 213 (380)
...+..+|+.+...... ..-|+..++++ .+++.++|.|-.-.++..++++
T Consensus 208 ~~~l~~lN~~l~~~~~~-----~~~t~~~~~~d~~~~~l~~~~AGhp~~~~~~~~~~ 259 (303)
T PRK10693 208 GALLKQVNHLLRQANLP-----GQFPLLVGYYHRELKNLILVSAGLNATLNTGEHQV 259 (303)
T ss_pred HHHHHHHHHHHHhcCCC-----ceeeEEEEEEEcCCCeEEEEeCCCCCEEecCCeEE
Confidence 44566677777765221 12477777776 4589999999999885444433
No 21
>COG3700 AphA Acid phosphatase (class B) [General function prediction only]
Probab=51.32 E-value=28 Score=30.79 Aligned_cols=49 Identities=22% Similarity=0.387 Sum_probs=37.0
Q ss_pred CCeEEEEEcCCcc-----------CCCChHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCC
Q 016914 283 EDEFLIIACDGVW-----------DVFMSQNAVDFARRRLQEHNDPVMCSKDLVDEALKRK 332 (380)
Q Consensus 283 ~d~~LVL~SDGl~-----------d~l~~~ei~~~i~~~l~~~~~~~~~a~~Lv~~A~~~g 332 (380)
+|.+| ..|.|+| |+|.++...+.+.+...+..-|.+.|+.|++.-.+||
T Consensus 71 DDTvL-FsSp~F~~Gk~~~sPgs~DyLknq~FW~~vn~g~D~~SIPKevA~qLI~MHq~RG 130 (237)
T COG3700 71 DDTVL-FSSPGFWRGKKYFSPGSEDYLKNQVFWEKVNNGWDEFSIPKEVARQLIDMHQRRG 130 (237)
T ss_pred CCeeE-ecccccccCccccCCChHHhhcCHHHHHHHhcCCccccchHHHHHHHHHHHHhcC
Confidence 45444 7888886 6677888777766555566679999999999988876
No 22
>PHA02606 5.1 hypothetical protein; Provisional
Probab=36.83 E-value=27 Score=30.06 Aligned_cols=26 Identities=35% Similarity=0.400 Sum_probs=15.7
Q ss_pred cccCCCCCCCCCCCCCCCCCCCcccc
Q 016914 5 EEIGRLENGSSSRSGRPPNPPTAADR 30 (380)
Q Consensus 5 ~~~~~~~~~~~~~~~~pp~~~~~~~r 30 (380)
+.+|.|+|+.||.+..-+.|+++..|
T Consensus 124 ~~Ggsg~~~~~~~~~~e~~Ppp~p~~ 149 (179)
T PHA02606 124 ESGGSGSGSNSSEGAGETNPPPAPVR 149 (179)
T ss_pred CCCCcCCCccccccccccCCCCCcee
Confidence 34444445556666666777666666
No 23
>cd00534 DHNA_DHNTPE Dihydroneopterin aldolase (DHNA) and 7,8-dihydroneopterin triphosphate epimerase domain (DHNTPE); these enzymes have been designated folB and folX, respectively. Folate derivatives are essential cofactors in the biosynthesis of purines, pyrimidines, and amino acids, as well as formyl-tRNA. Mammalian cells are able to utilize pre-formed folates after uptake by a carrier-mediated active transport system. Most microbes and plants lack this system and must synthesize folates de novo from guanosine triphosphate. One enzyme from this pathway is DHNA which catalyses the conversion of 7,8-dihydroneopterin to 6-hydroxymethyl-7,8-dihydropterin in the biosynthetic pathway of tetrahydrofolate. Though it is known that DHNTPE catalyzes the epimerization of dihydroneopterin triphosphate to dihydromonapterin triphosphate, the biological role of this enzyme is still unclear. It is hypothesized that it is not an essential protein since a folX knockout in E. coli has a normal phenoty
Probab=35.19 E-value=1.6e+02 Score=23.72 Aligned_cols=60 Identities=10% Similarity=0.130 Sum_probs=43.3
Q ss_pred EEcCCccCCCChHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHhCCCCCCeEEEEEEcCCCCCC
Q 016914 289 IACDGVWDVFMSQNAVDFARRRLQE--HNDPVMCSKDLVDEALKRKSGDNLAVVVVCFQSQPPP 350 (380)
Q Consensus 289 L~SDGl~d~l~~~ei~~~i~~~l~~--~~~~~~~a~~Lv~~A~~~g~~DNiTvivv~~~~~~~~ 350 (380)
-.||-|-+.++...+.+.+.+.+.+ .+..+..|+.|.+..+.. .+.+.-+-|++.+..++
T Consensus 42 ~~~D~l~~tidY~~l~~~i~~~~~~~~~~llE~La~~ia~~i~~~--~~~v~~v~v~v~K~~~~ 103 (118)
T cd00534 42 GESDDLADTLNYAEVAKLIKKIVEGSPFKLIETLAEEIADILLED--YPKVSAIKVKVEKPNAP 103 (118)
T ss_pred hccCChhhccCHHHHHHHHHHHHhCCCHhHHHHHHHHHHHHHHHh--CCCceEEEEEEECCCCC
Confidence 4678888888999999988887654 346788899999888875 24455555666555444
No 24
>COG1539 FolB Dihydroneopterin aldolase [Coenzyme metabolism]
Probab=31.29 E-value=2.2e+02 Score=23.33 Aligned_cols=61 Identities=13% Similarity=0.139 Sum_probs=47.1
Q ss_pred EEcCCccCCCChHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHhCCCCCCeEEEEEEcCCCCCCC
Q 016914 289 IACDGVWDVFMSQNAVDFARRRLQEH--NDPVMCSKDLVDEALKRKSGDNLAVVVVCFQSQPPPN 351 (380)
Q Consensus 289 L~SDGl~d~l~~~ei~~~i~~~l~~~--~~~~~~a~~Lv~~A~~~g~~DNiTvivv~~~~~~~~~ 351 (380)
..||=|-|.+.-.++.+.+.+.+.+. .-.+..|+++.+..+.+- ..++.+=|.+.++.+|.
T Consensus 43 ~~~Ddl~dtl~Y~~v~~~i~~~v~~~~~~LiE~lA~~ia~~l~~~~--~~v~~~~v~v~KP~ap~ 105 (121)
T COG1539 43 AESDDLADTLNYAEVSELIKEIVEGKRFALIETLAEEIADLLLARF--PRVELVEVKVTKPKAPI 105 (121)
T ss_pred cCccchhheecHHHHHHHHHHHHhCCccchHHHHHHHHHHHHHhhC--CccEEEEEEEECCCCCC
Confidence 46788999999999999988877643 357888899988888754 67888878887665553
No 25
>KOG2675 consensus Adenylate cyclase-associated protein (CAP/Srv2p) [Cytoskeleton; Signal transduction mechanisms]
Probab=27.62 E-value=40 Score=33.82 Aligned_cols=9 Identities=0% Similarity=0.054 Sum_probs=3.3
Q ss_pred CcceEEEEE
Q 016914 182 GTTALAALV 190 (380)
Q Consensus 182 GtT~~~~~i 190 (380)
+|+=+.+++
T Consensus 379 ~Ckk~svVf 387 (480)
T KOG2675|consen 379 NCKKTSVVF 387 (480)
T ss_pred CCceeeEEE
Confidence 333333333
No 26
>PF06972 DUF1296: Protein of unknown function (DUF1296); InterPro: IPR009719 This family represents a conserved region approximately 60 residues long within a number of plant proteins of unknown function.
Probab=27.25 E-value=1e+02 Score=21.95 Aligned_cols=26 Identities=12% Similarity=0.188 Sum_probs=21.6
Q ss_pred CChHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 016914 298 FMSQNAVDFARRRLQEHNDPVMCSKDLVD 326 (380)
Q Consensus 298 l~~~ei~~~i~~~l~~~~~~~~~a~~Lv~ 326 (380)
.+++||..++..+ .-||.++++.|+.
T Consensus 19 hse~eIya~L~ec---nMDpnea~qrLL~ 44 (60)
T PF06972_consen 19 HSEEEIYAMLKEC---NMDPNEAVQRLLS 44 (60)
T ss_pred CCHHHHHHHHHHh---CCCHHHHHHHHHh
Confidence 5788999887764 7799999999986
No 27
>PF09436 DUF2016: Domain of unknown function (DUF2016); InterPro: IPR018560 This entry represents the N-terminal of proteins that contain a ubiquitin domain.
Probab=26.17 E-value=40 Score=25.07 Aligned_cols=18 Identities=22% Similarity=0.357 Sum_probs=13.2
Q ss_pred CCCeEEEEEcCCccCCCCh
Q 016914 282 EEDEFLIIACDGVWDVFMS 300 (380)
Q Consensus 282 ~~d~~LVL~SDGl~d~l~~ 300 (380)
.|.++| +++||+|=-+..
T Consensus 26 ~G~Rll-va~nGv~lEv~r 43 (72)
T PF09436_consen 26 PGHRLL-VASNGVFLEVRR 43 (72)
T ss_pred CCcEEE-EecCcEEEEEec
Confidence 566655 999999966544
No 28
>TIGR00525 folB dihydroneopterin aldolase. This model describes a bacterial dihydroneopterin aldolase, shown to form homo-octamers in E. coli. The equivalent activity is catalyzed by domains of larger folate biosynthesis proteins in other systems. The closely related parologous enzyme in E. coli, dihydroneopterin triphosphate epimerase, which is also homo-octameric, and dihydroneopterin aldolase domains of larger proteins, score below the trusted cutoff but may score well above the noise cutoff.
Probab=25.54 E-value=2.8e+02 Score=22.13 Aligned_cols=60 Identities=12% Similarity=0.058 Sum_probs=41.7
Q ss_pred EEcCCccCCCChHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHhCCCCCCeEEEEEEcCCCCCC
Q 016914 289 IACDGVWDVFMSQNAVDFARRRLQE--HNDPVMCSKDLVDEALKRKSGDNLAVVVVCFQSQPPP 350 (380)
Q Consensus 289 L~SDGl~d~l~~~ei~~~i~~~l~~--~~~~~~~a~~Lv~~A~~~g~~DNiTvivv~~~~~~~~ 350 (380)
-.+|.+-+.++..++.+.+...+.+ ....+..|+.+.+..+.... .+.-+-|++.++.+|
T Consensus 41 ~~~D~l~~tidY~~v~~~i~~~~~~~~~~llE~la~~Ia~~i~~~~~--~v~~v~v~i~Kp~ap 102 (116)
T TIGR00525 41 AESDDLGDTVNYAELYSAIEEIVAEKPRDLIETVAYRIADRLFADFP--QVQRVKVRVSKPNAP 102 (116)
T ss_pred hccCCchhccCHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHCC--CceEEEEEEEeCCCC
Confidence 4578888888999999988877653 24678888888888877532 344555555554443
No 29
>PF04155 Ground-like: Ground-like domain; InterPro: IPR007284 This group of proteins contain one or more copies of the ground-like domain, which are specific to Caenorhabditis elegans and Caenorhabditis briggsae. It has been proposed that the ground-like domain containing proteins may bind and modulate the activity of Patched-like membrane molecules, reminiscent of the modulating activities of neuropeptides [].
Probab=24.31 E-value=2.4e+02 Score=20.74 Aligned_cols=42 Identities=17% Similarity=0.259 Sum_probs=28.9
Q ss_pred ChHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCCCCeEEEEE
Q 016914 299 MSQNAVDFARRRLQEHNDPVMCSKDLVDEALKRKSGDNLAVVVV 342 (380)
Q Consensus 299 ~~~ei~~~i~~~l~~~~~~~~~a~~Lv~~A~~~g~~DNiTvivv 342 (380)
.++++.++|.+.+.+ .++...++.|...|.++-+. +..||+-
T Consensus 7 n~~~L~~ii~~~~~~-~~~~~s~~~Iq~~~e~~f~~-~f~vIcs 48 (76)
T PF04155_consen 7 NSEELRKIILKNMKE-CNLSISKRAIQKAAEKRFGG-SFEVICS 48 (76)
T ss_pred CCHHHHHHHHHHhcc-CCHHHHHHHHHHHHHHHhCC-CEEEEEe
Confidence 567888888877644 67888888887777655443 6666653
No 30
>PF12095 DUF3571: Protein of unknown function (DUF3571); InterPro: IPR021954 This family of proteins is functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 85 to 97 amino acids in length. ; PDB: 2KRX_A.
Probab=23.33 E-value=2.5e+02 Score=21.53 Aligned_cols=57 Identities=14% Similarity=0.178 Sum_probs=32.1
Q ss_pred CCCeEEEEEcCCccCCCChHHHHHHHHHHHhcC----------CCHHHHHHHHHHHHHhCCCCCCeE
Q 016914 282 EEDEFLIIACDGVWDVFMSQNAVDFARRRLQEH----------NDPVMCSKDLVDEALKRKSGDNLA 338 (380)
Q Consensus 282 ~~d~~LVL~SDGl~d~l~~~ei~~~i~~~l~~~----------~~~~~~a~~Lv~~A~~~g~~DNiT 338 (380)
..|.|+||-.+-==..++.+|+...+...+.+. .+.++.|+.|++.+.+-.-.+..+
T Consensus 8 ~~d~yVvLEp~~~Eqflt~~Ell~~Lk~~L~~~~~LP~dL~~~~s~~~qa~~Lldt~CeLeigpg~~ 74 (83)
T PF12095_consen 8 QEDHYVVLEPGQPEQFLTPEELLEKLKEWLQNQDDLPPDLAKFSSVEEQAQYLLDTACELEIGPGGY 74 (83)
T ss_dssp ----EEEEESSS-SEEE-HHHHHHHHHHHHHHTTTS-HHHHH---HHHHHHHHHHH---EEEETTEE
T ss_pred ccCCEEEecCCCCcccCCHHHHHHHHHHHHHcCCCCCHHHHhCCCHHHHHHHHHHhceeeecCCCCE
Confidence 456677777655555679999998888777653 346788899998886543333333
No 31
>smart00331 PP2C_SIG Sigma factor PP2C-like phosphatases.
Probab=20.83 E-value=5.4e+02 Score=22.01 Aligned_cols=63 Identities=17% Similarity=0.147 Sum_probs=38.1
Q ss_pred CCCeEEEEEcCCccCCCChHHHHHHHH----HHHhcCCCHHHHHHHHHHHHHhC-CCCCCeEEEEEEc
Q 016914 282 EEDEFLIIACDGVWDVFMSQNAVDFAR----RRLQEHNDPVMCSKDLVDEALKR-KSGDNLAVVVVCF 344 (380)
Q Consensus 282 ~~d~~LVL~SDGl~d~l~~~ei~~~i~----~~l~~~~~~~~~a~~Lv~~A~~~-g~~DNiTvivv~~ 344 (380)
+++.++++..||.-.-.....+...+. ..+....++.++.+.+-+..... ....-+|++++.+
T Consensus 27 ~~~~~~~~v~Dg~G~G~~aa~~s~~~~~~~~~~~~~~~~~~~~l~~~n~~l~~~~~~~~~~T~~~~~i 94 (193)
T smart00331 27 PEGRLLIAIADVMGKGLAAALAMSMARSALRTLLSEGISLSQILERLNRAIYENGEDGMFATLFLALY 94 (193)
T ss_pred CCCeEEEEEEecCCCChHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCcEEEEEEEEE
Confidence 334577789999987666554444333 33334456788777766555444 3334677777666
No 32
>PF06057 VirJ: Bacterial virulence protein (VirJ); InterPro: IPR010333 This entry contains several bacterial VirJ virulence proteins. VirJ is thought to be involved in the type IV secretion system. It is thought that the substrate proteins localised to the periplasm may associate with the pilus in a manner that is mediated by VirJ, and suggest a two-step process for type IV secretion in Agrobacterium [].
Probab=20.43 E-value=4.2e+02 Score=23.72 Aligned_cols=63 Identities=19% Similarity=0.306 Sum_probs=39.7
Q ss_pred CeEEEEEc-CCccCCCChHHHHHHHH-----------HHHhcCCCHHHHHHH---HHHHHHhCCCCCCeEEEEEEcCC
Q 016914 284 DEFLIIAC-DGVWDVFMSQNAVDFAR-----------RRLQEHNDPVMCSKD---LVDEALKRKSGDNLAVVVVCFQS 346 (380)
Q Consensus 284 d~~LVL~S-DGl~d~l~~~ei~~~i~-----------~~l~~~~~~~~~a~~---Lv~~A~~~g~~DNiTvivv~~~~ 346 (380)
|.+.|+.| ||=|..++.+-...+.. +++.+.++|++.+.. +++...+++..+++-+|=-.|..
T Consensus 2 Dt~~v~~SGDgGw~~~d~~~a~~l~~~G~~VvGvdsl~Yfw~~rtP~~~a~Dl~~~i~~y~~~w~~~~vvLiGYSFGA 79 (192)
T PF06057_consen 2 DTLAVFFSGDGGWRDLDKQIAEALAKQGVPVVGVDSLRYFWSERTPEQTAADLARIIRHYRARWGRKRVVLIGYSFGA 79 (192)
T ss_pred CEEEEEEeCCCCchhhhHHHHHHHHHCCCeEEEechHHHHhhhCCHHHHHHHHHHHHHHHHHHhCCceEEEEeecCCc
Confidence 45666666 99999877654433322 234467789988755 55555677777777555445543
No 33
>PRK11593 folB bifunctional dihydroneopterin aldolase/dihydroneopterin triphosphate 2'-epimerase; Provisional
Probab=20.22 E-value=4.4e+02 Score=21.15 Aligned_cols=59 Identities=10% Similarity=0.041 Sum_probs=43.0
Q ss_pred EEcCCccCCCChHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHhCCCCCCeEEEEEEcCCCCCC
Q 016914 289 IACDGVWDVFMSQNAVDFARRRLQEH--NDPVMCSKDLVDEALKRKSGDNLAVVVVCFQSQPPP 350 (380)
Q Consensus 289 L~SDGl~d~l~~~ei~~~i~~~l~~~--~~~~~~a~~Lv~~A~~~g~~DNiTvivv~~~~~~~~ 350 (380)
-.||-+-+.++-..+.+.+...+.+. ...+..|+.|.+..+..-. +.-+-|++.++.++
T Consensus 42 ~~~Ddl~~tidY~~v~~~I~~~~~~~~~~LlE~la~~ia~~i~~~~~---~~~v~v~v~Kp~a~ 102 (119)
T PRK11593 42 AKSDDVADCLSYADIAETVISHVEGARFALVERVAEEVAELLLARFN---SPWVRIKLSKPGAV 102 (119)
T ss_pred ccccCHhhccCHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHhhCC---CcEEEEEEECCCCC
Confidence 45788989999999999988877643 4788999999988876643 34455666655444
Done!