BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016916
(380 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1UH7|A Chain A, Crystal Structure Of Rhizopuspepsin At Ph 4.6
pdb|1UH8|A Chain A, Crystal Structure Of Rhizopuspepsin At Ph 8.0
pdb|1UH9|A Chain A, Crystal Structure Of Rhizopuspepsin At Ph 7.0
Length = 325
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 58/151 (38%), Gaps = 31/151 (20%)
Query: 57 IGQPARPYFLDLDTGSDLTWLQCDAPCVRCVEAPHPLYRPSNDLVPCEDPICASLHAPGH 116
IG P + + LD DTGS W+ C C + Y P+ ++ A G
Sbjct: 23 IGTPGKKFNLDFDTGSSDLWI-ASTLCTNC-GSRQTKYDPNQ---------SSTYQADGR 71
Query: 117 HNCEDPAQCDYELEYADGGSSLGVLVKDAFAFNYTNGQRLNPRLALGCGYNQVPGASYHP 176
+ + Y DG S+ G+L KD N G L + + + P
Sbjct: 72 T---------WSISYGDGSSASGILAKD----NVNLGGLLIKGQTIELAKREAASFASGP 118
Query: 177 LDGILGLG-------KGKSSIVSQLHSQKLI 200
DG+LGLG +G + + L SQ LI
Sbjct: 119 NDGLLGLGFDTITTVRGVKTPMDNLISQGLI 149
>pdb|3APR|E Chain E, Binding Of A Reduced Peptide Inhibitor To The Aspartic
Proteinase From Rhizopus Chinensis. Implications For A
Mechanism Of Action
pdb|4APR|E Chain E, Structures Of Complexes Of Rhizopuspepsin With Pepstatin
And Other Statine-Containing Inhibitors
pdb|5APR|E Chain E, Structures Of Complexes Of Rhizopuspepsin With Pepstatin
And Other Statine-Containing Inhibitors
pdb|6APR|E Chain E, Structures Of Complexes Of Rhizopuspepsin With Pepstatin
And Other Statine-Containing Inhibitors
pdb|2APR|A Chain A, Structure And Refinement At 1.8 Angstroms Resolution Of
The Aspartic Proteinase From Rhizopus Chinensis
Length = 325
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 58/151 (38%), Gaps = 31/151 (20%)
Query: 57 IGQPARPYFLDLDTGSDLTWLQCDAPCVRCVEAPHPLYRPSNDLVPCEDPICASLHAPGH 116
IG P + + LD DTGS W+ C C + Y P+ ++ A G
Sbjct: 23 IGTPGKKFNLDFDTGSSDLWI-ASTLCTNC-GSGQTKYDPNQ---------SSTYQADGR 71
Query: 117 HNCEDPAQCDYELEYADGGSSLGVLVKDAFAFNYTNGQRLNPRLALGCGYNQVPGASYHP 176
+ + Y DG S+ G+L KD N G L + + + P
Sbjct: 72 T---------WSISYGDGSSASGILAKD----NVNLGGLLIKGQTIELAKREAASFASGP 118
Query: 177 LDGILGLG-------KGKSSIVSQLHSQKLI 200
DG+LGLG +G + + L SQ LI
Sbjct: 119 NDGLLGLGFDTITTVRGVKTPMDNLISQGLI 149
>pdb|1WKR|A Chain A, Crystal Structure Of Aspartic Proteinase From Irpex
Lacteus
Length = 340
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 20/36 (55%)
Query: 51 YNVTMYIGQPARPYFLDLDTGSDLTWLQCDAPCVRC 86
Y V + +G PA Y L +DTGS TWL D V+
Sbjct: 14 YVVNVGVGSPATTYSLLVDTGSSNTWLGADKSYVKT 49
>pdb|2QZW|A Chain A, Secreted Aspartic Proteinase (Sap) 1 From Candida Albicans
pdb|2QZW|B Chain B, Secreted Aspartic Proteinase (Sap) 1 From Candida Albicans
Length = 341
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 32/139 (23%), Positives = 48/139 (34%), Gaps = 30/139 (21%)
Query: 51 YNVTMYIGQPARPYFLDLDTGSDLTWL-----QCDAPCVRCVEAPHPLYRPSNDLVPCED 105
Y + IG + + + +DTGS W+ CD P RP C+
Sbjct: 14 YAADITIGSNKQKFNVIVDTGSSDLWVPDASVTCDKP------------RPGQSADFCK- 60
Query: 106 PICASLHAPGHHNCEDPAQCDYELEYADGGSSLGVLVKDAFAFNYTNGQRLNPRLALGCG 165
++ P + + Y DG SS G L KD F G + ++
Sbjct: 61 --GKGIYTPKSSTTSQNLGTPFYIGYGDGSSSQGTLYKDTVGF---GGASITKQVFADIT 115
Query: 166 YNQVPGASYHPLDGILGLG 184
+P GILG+G
Sbjct: 116 KTSIP-------QGILGIG 127
>pdb|2BJU|A Chain A, Plasmepsin Ii Complexed With A Highly Active Achiral
Inhibitor
Length = 453
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 46/191 (24%), Positives = 68/191 (35%), Gaps = 51/191 (26%)
Query: 31 NHVGSSLLFQVHGNVYPTGYYNVTMY----IGQPARPYFLDLDTGSDLTWLQCDAPCVRC 86
N++GSS + N+ + N+ Y +G +P+ LDTGS W+ P V+C
Sbjct: 121 NYLGSS-----NDNIELVDFQNIMFYGDAEVGDNQQPFTFILDTGSANLWV----PSVKC 171
Query: 87 VEAPHPLYRPSNDLVPCEDPICASLHAPGHHNCEDPAQCDYELEYADGGSSLGVLVKDAF 146
A C + L+ + E+ Y G S G KD
Sbjct: 172 TTA------------GC---LTKHLYDSSKSRTYEKDGTKVEMNYVSGTVS-GFFSKDLV 215
Query: 147 AFNYTNGQRLNPRLALGCGYNQV-------PGASYHPLDGILGLGKGKSS------IVSQ 193
L+L + +V P + DGILGLG S IV +
Sbjct: 216 TVG---------NLSLPYKFIEVIDTNGFEPTYTASTFDGILGLGWKDLSIGSVDPIVVE 266
Query: 194 LHSQKLIRNVV 204
L +Q I N +
Sbjct: 267 LKNQNKIENAL 277
>pdb|1PFZ|A Chain A, Proplasmepsin Ii From Plasmodium Falciparum
pdb|1PFZ|B Chain B, Proplasmepsin Ii From Plasmodium Falciparum
pdb|1PFZ|C Chain C, Proplasmepsin Ii From Plasmodium Falciparum
pdb|1PFZ|D Chain D, Proplasmepsin Ii From Plasmodium Falciparum
Length = 380
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 46/191 (24%), Positives = 68/191 (35%), Gaps = 51/191 (26%)
Query: 31 NHVGSSLLFQVHGNVYPTGYYNVTMY----IGQPARPYFLDLDTGSDLTWLQCDAPCVRC 86
N++GSS + N+ + N+ Y +G +P+ LDTGS W+ P V+C
Sbjct: 48 NYLGSS-----NDNIELVDFQNIMFYGDAEVGDNQQPFTFILDTGSANLWV----PSVKC 98
Query: 87 VEAPHPLYRPSNDLVPCEDPICASLHAPGHHNCEDPAQCDYELEYADGGSSLGVLVKDAF 146
A C + L+ + E+ Y G S G KD
Sbjct: 99 TTA------------GC---LTKHLYDSSKSRTYEKDGTKVEMNYVSGTVS-GFFSKDLV 142
Query: 147 AFNYTNGQRLNPRLALGCGYNQV-------PGASYHPLDGILGLGKGKSS------IVSQ 193
L+L + +V P + DGILGLG S IV +
Sbjct: 143 TVG---------NLSLPYKFIEVIDTNGFEPTYTASTFDGILGLGWKDLSIGSVDPIVVE 193
Query: 194 LHSQKLIRNVV 204
L +Q I N +
Sbjct: 194 LKNQNKIENAL 204
>pdb|1ER8|E Chain E, The Active Site Of Aspartic Proteinases
pdb|2ER0|E Chain E, X-Ray Studies Of Aspartic Proteinase-Statine Inhibitor
Complexes
pdb|2ER6|E Chain E, The Structure Of A Synthetic Pepsin Inhibitor Complexed
With Endothiapepsin.
pdb|2ER7|E Chain E, X-Ray Analyses Of Aspartic Proteinases.Iii.
Three-Dimensional Structure Of Endothiapepsin Complexed
With A Transition-State Isostere Inhibitor Of Renin At
1.6 Angstroms Resolution
pdb|2ER9|E Chain E, X-Ray Studies Of Aspartic Proteinase-Statine Inhibitor
Complexes.
pdb|3ER3|E Chain E, The Active Site Of Aspartic Proteinases
pdb|3ER5|E Chain E, The Active Site Of Aspartic Proteinases
pdb|4ER1|E Chain E, The Active Site Of Aspartic Proteinases
pdb|4ER2|E Chain E, The Active Site Of Aspartic Proteinases
pdb|4ER4|E Chain E, High-Resolution X-Ray Analyses Of Renin
Inhibitor-Aspartic Proteinase Complexes
pdb|5ER1|E Chain E, A Rational Approach To The Design Of Antihypertensives.
X-Ray Studies Of Complexes Between Aspartic Proteinases
And Aminoalcohol Renin Inhibitors
pdb|5ER2|E Chain E, High-Resolution X-Ray Diffraction Study Of The Complex
Between Endothiapepsin And An Oligopeptide Inhibitor.
The Analysis Of The Inhibitor Binding And Description
Of The Rigid Body Shift In The Enzyme
pdb|1EED|P Chain P, X-Ray Crystallographic Analysis Of Inhibition Of
Endothiapepsin By Cyclohexyl Renin Inhibitors
pdb|1ENT|E Chain E, X-Ray Analyses Of Aspartic Proteinases. The
Three-Dimensional Structure At 2.1 Angstroms Resolution
Of Endothiapepsin
pdb|1EPL|E Chain E, A Structural Comparison Of 21 Inhibitor Complexes Of The
Aspartic Proteinase From Endothia Parasitica
pdb|1EPM|E Chain E, A Structural Comparison Of 21 Inhibitor Complexes Of The
Aspartic Proteinase From Endothia Parasitica
pdb|1EPN|E Chain E, A Structural Comparison Of 21 Inhibitor Complexes Of The
Aspartic Proteinase From Endothia Parasitica
pdb|1EPO|E Chain E, Endothia Aspartic Proteinase (Endothiapepsin) Complexed
With Cp-81,282 (Mor Phe Nle Chf Nme)
pdb|1EPP|E Chain E, Endothia Aspartic Proteinase (endothiapepsin) Complexed
With Pd-130, 693 (mas Phe Lys+mtf Sta Mba)
pdb|1EPQ|E Chain E, Endothia Aspartic Proteinase (Endothiapepsin) Complexed
With Pd-133, 450 (Sot Phe Gly+scc Gcl)
pdb|1E5O|E Chain E, Endothiapepsin Complex With Inhibitor Db2
pdb|1E81|E Chain E, Endothiapepsin Complex With Renin Inhibitor
Merck-Kgaa-Emd61395
pdb|1E82|E Chain E, Endothiapepsin Complex With Renin Inhibitor
Merck-Kgaa-Emd59601
pdb|1E80|E Chain E, Endothiapepsin Complex With Renin Inhibitor
Merck-Kgaa-Emd56133
pdb|1OD1|A Chain A, Endothiapepsin Pd135,040 Complex
pdb|4APE|A Chain A, The Active Site Of Aspartic Proteinases
pdb|2V00|A Chain A, X-Ray Crystal Structure Of Endothiapepsin Complexed With
Compound 1
pdb|3LZY|A Chain A, Crystal Structure Of Endothiapesin In Complex With Xenon
pdb|3PB5|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PBD|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PBZ|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PCW|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PCZ|A Chain A, Endothiapepsin In Complex With Benzamidine
pdb|3PGI|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PRS|A Chain A, Endothiapepsin In Complex With Ritonavir
pdb|3PI0|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PLD|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PLL|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PM4|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PMU|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PMY|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PSY|A Chain A, Endothiapepsin In Complex With An Inhibitor Based On The
Gewald Reaction
pdb|3PWW|A Chain A, Endothiapepsin In Complex With Saquinavir
pdb|3Q6Y|A Chain A, Endothiapepsin In Complex With A Pyrrolidine Based
Inhibitor
pdb|3T6I|A Chain A, Endothiapepsin In Complex With An Azepin Derivative
pdb|3T7P|A Chain A, Endothiapepsin In Complex With A Hydrazide Derivative
pdb|3T7Q|A Chain A, Endothiapepsin In Complex With An Inhibitor Based On The
Gewald Reaction
pdb|3T7X|A Chain A, Endothiapepsin In Complex With An Inhibitor Based On The
Gewald Reaction
Length = 330
Score = 28.5 bits (62), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 21/48 (43%), Gaps = 1/48 (2%)
Query: 51 YNVTMYIGQPARPYFLDLDTGSDLTWLQCDAPCVRCVEAPHPLYRPSN 98
Y + IG PA+ LD DTGS W+ V+ +Y PS
Sbjct: 17 YITPVQIGTPAQTLNLDFDTGSSDLWVFSSETTASEVDG-QTIYTPSK 63
>pdb|1EPR|E Chain E, Endothia Aspartic Proteinase (Endothiapepsin) Complexed
With Pd-135, 040
Length = 330
Score = 28.5 bits (62), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 21/48 (43%), Gaps = 1/48 (2%)
Query: 51 YNVTMYIGQPARPYFLDLDTGSDLTWLQCDAPCVRCVEAPHPLYRPSN 98
Y + IG PA+ LD DTGS W+ V+ +Y PS
Sbjct: 17 YITPVQIGTPAQTLNLDFDTGSSDLWVFSSETTASEVDG-QTIYTPSK 63
>pdb|3C9X|A Chain A, Crystal Structure Of Trichoderma Reesei Aspartic
Proteinase
pdb|3EMY|A Chain A, Crystal Structure Of Trichoderma Reesei Aspartic
Proteinase Complexed With Pepstatin A
Length = 329
Score = 28.5 bits (62), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
Query: 51 YNVTMYIGQPARPYFLDLDTGSDLTWL-QCDAPCVRCVEAPHPLYRP 96
Y ++ IG PA+ LD DTGS W+ + P + H +Y P
Sbjct: 17 YITSVSIGTPAQVLPLDFDTGSSDLWVFSSETP--KSSATGHAIYTP 61
>pdb|1GKT|A Chain A, Neutron Laue Diffraction Structure Of Endothiapepsin
Complexed With Transition State Analogue Inhibitor H261
Length = 329
Score = 28.5 bits (62), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 20/48 (41%), Gaps = 2/48 (4%)
Query: 51 YNVTMYIGQPARPYFLDLDTGSDLTWLQCDAPCVRCVEAPHPLYRPSN 98
Y + IG PA+ LD DTGS W+ E +Y PS
Sbjct: 17 YITPVQIGTPAQTLNLDFDTGSSDLWVFSSETTAS--EVXQTIYTPSK 62
>pdb|1GVT|A Chain A, Endothiapepsin Complex With Cp-80,794
pdb|1GVU|A Chain A, Endothiapepsin Complex With H189
pdb|1GVV|A Chain A, Five Atomic Resolution Structures Of Endothiapepsin
Inhibitor Complexes; Implications For The Aspartic
Proteinase Mechanism
pdb|1GVW|A Chain A, Endothiapepsin Complex With Pd-130,328
pdb|1GVX|A Chain A, Endothiapepsin Complexed With H256
pdb|1OEX|A Chain A, Atomic Resolution Structure Of Endothiapepsin In Complex
With A Hydroxyethylene Transition State Analogue
Inhibitor H261
pdb|2JJI|A Chain A, Endothiapepsin In Complex With A Gem-Diol Inhibitor.
pdb|2JJJ|A Chain A, Endothiapepsin In Complex With A Gem-Diol Inhibitor.
pdb|2VS2|A Chain A, Neutron Diffraction Structure Of Endothiapepsin In
Complex With A Gem- Diol Inhibitor.
pdb|3URJ|A Chain A, Type Iv Native Endothiapepsin
pdb|3URI|A Chain A, Endothiapepsin-Db5 Complex.
pdb|3URL|A Chain A, Endothiapepsin-Db6 Complex.
pdb|1OEW|A Chain A, Atomic Resolution Structure Of Native Endothiapepsin
Length = 329
Score = 28.5 bits (62), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 20/48 (41%), Gaps = 2/48 (4%)
Query: 51 YNVTMYIGQPARPYFLDLDTGSDLTWLQCDAPCVRCVEAPHPLYRPSN 98
Y + IG PA+ LD DTGS W+ E +Y PS
Sbjct: 17 YITPVQIGTPAQTLNLDFDTGSSDLWVFSSETTAS--EVXQTIYTPSK 62
>pdb|1MPP|A Chain A, X-Ray Analyses Of Aspartic Proteinases. V. Structure And
Refinement At 2.0 Angstroms Resolution Of The Aspartic
Proteinase From Mucor Pusillus
Length = 361
Score = 28.5 bits (62), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 51 YNVTMYIGQPARPYFLDLDTGSDLTWL 77
Y + + IG P + ++L DTGS TW+
Sbjct: 20 YAIPVSIGTPGQDFYLLFDTGSSDTWV 46
>pdb|1AM5|A Chain A, The Crystal Structure And Proposed Amino Acid Sequence Of
A Pepsin From Atlantic Cod (Gadus Morhua)
Length = 324
Score = 28.1 bits (61), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 60/173 (34%), Gaps = 48/173 (27%)
Query: 44 NVYPTGYYNVTMYIGQPARPYFLDLDTGSDLTWLQCDAPCVRCVEAPHPLYRPSNDLVPC 103
N T YY V + IG P + + DTGS W V + H C
Sbjct: 8 NEADTEYYGV-ISIGTPPESFKVIFDTGSSNLW----------VSSSH-----------C 45
Query: 104 EDPICASLHAPGHHNCEDPAQCD--------YELEYADGGSSLGVLVKDAFAFNYTNGQR 155
C+ +HN P Q +L Y GG G+L +D + G
Sbjct: 46 SAQACS------NHNKFKPRQSSTYVETGKTVDLTYGTGGMR-GILGQDTVSV----GGG 94
Query: 156 LNPRLALGCGYNQV-PGASYHPLDGILGL------GKGKSSIVSQLHSQKLIR 201
+P LG + P + P DGILGL G + + SQ L+
Sbjct: 95 SDPNQELGESQTEPGPFQAAAPFDGILGLAYPSIAAAGAVPVFDNMGSQSLVE 147
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.138 0.436
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,910,766
Number of Sequences: 62578
Number of extensions: 506558
Number of successful extensions: 929
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 925
Number of HSP's gapped (non-prelim): 15
length of query: 380
length of database: 14,973,337
effective HSP length: 101
effective length of query: 279
effective length of database: 8,652,959
effective search space: 2414175561
effective search space used: 2414175561
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)