Query 016916
Match_columns 380
No_of_seqs 159 out of 1247
Neff 8.5
Searched_HMMs 46136
Date Fri Mar 29 03:58:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016916.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016916hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03146 aspartyl protease fam 100.0 2.4E-52 5.2E-57 413.2 33.9 307 47-378 81-407 (431)
2 KOG1339 Aspartyl protease [Pos 100.0 1.2E-50 2.7E-55 398.5 33.8 322 35-378 31-372 (398)
3 PTZ00165 aspartyl protease; Pr 100.0 2.5E-47 5.3E-52 379.7 29.2 285 46-377 116-426 (482)
4 cd05490 Cathepsin_D2 Cathepsin 100.0 1.3E-46 2.8E-51 361.1 29.5 282 46-377 2-306 (325)
5 cd05478 pepsin_A Pepsin A, asp 100.0 1.3E-46 2.8E-51 359.8 28.3 278 47-377 7-298 (317)
6 cd05486 Cathespin_E Cathepsin 100.0 1.3E-46 2.8E-51 359.7 26.7 276 51-377 1-297 (316)
7 cd05475 nucellin_like Nucellin 100.0 3.9E-46 8.4E-51 349.2 28.9 249 49-378 1-252 (273)
8 cd05472 cnd41_like Chloroplast 100.0 4.3E-46 9.2E-51 353.5 29.3 265 50-377 1-277 (299)
9 cd05477 gastricsin Gastricsins 100.0 5.4E-46 1.2E-50 355.7 29.5 279 49-377 2-298 (318)
10 cd05488 Proteinase_A_fungi Fun 100.0 7E-46 1.5E-50 355.2 28.3 281 47-377 7-301 (320)
11 cd06096 Plasmepsin_5 Plasmepsi 100.0 1.3E-45 2.9E-50 354.1 28.6 273 49-377 2-303 (326)
12 cd05489 xylanase_inhibitor_I_l 100.0 1E-44 2.2E-49 351.3 31.6 304 57-378 2-342 (362)
13 cd05485 Cathepsin_D_like Cathe 100.0 4.6E-45 1E-49 350.7 27.9 282 46-377 7-310 (329)
14 cd05487 renin_like Renin stimu 100.0 5.6E-45 1.2E-49 349.9 28.2 282 46-377 4-306 (326)
15 cd06098 phytepsin Phytepsin, a 100.0 1.1E-44 2.4E-49 346.5 29.9 270 46-377 6-298 (317)
16 PTZ00147 plasmepsin-1; Provisi 100.0 4.2E-44 9E-49 354.1 28.2 285 37-377 128-429 (453)
17 PTZ00013 plasmepsin 4 (PM4); P 100.0 1.8E-43 3.9E-48 348.9 28.7 284 38-377 128-428 (450)
18 cd05473 beta_secretase_like Be 100.0 7.9E-43 1.7E-47 339.8 28.2 292 50-378 3-326 (364)
19 cd05476 pepsin_A_like_plant Ch 100.0 5.3E-41 1.1E-45 313.2 25.8 226 50-377 1-243 (265)
20 cd06097 Aspergillopepsin_like 100.0 1.4E-40 3E-45 312.5 23.4 212 51-286 1-225 (278)
21 cd05474 SAP_like SAPs, pepsin- 100.0 1.5E-40 3.3E-45 314.6 23.5 245 50-377 2-275 (295)
22 PF00026 Asp: Eukaryotic aspar 100.0 7.3E-40 1.6E-44 312.6 16.6 278 50-376 1-296 (317)
23 cd05471 pepsin_like Pepsin-lik 100.0 9.7E-38 2.1E-42 293.0 25.1 239 51-330 1-256 (283)
24 PF14543 TAXi_N: Xylanase inhi 100.0 7.1E-29 1.5E-33 214.5 14.2 156 51-220 1-164 (164)
25 cd05470 pepsin_retropepsin_lik 99.9 4.3E-22 9.2E-27 160.4 13.0 107 53-183 1-109 (109)
26 PF14541 TAXi_C: Xylanase inhi 99.8 2.2E-18 4.9E-23 148.6 11.4 133 240-378 1-143 (161)
27 cd05483 retropepsin_like_bacte 97.9 4.3E-05 9.3E-10 59.1 7.0 93 50-185 2-94 (96)
28 TIGR02281 clan_AA_DTGA clan AA 96.2 0.044 9.5E-07 44.6 9.3 102 39-185 2-103 (121)
29 PF13650 Asp_protease_2: Aspar 95.0 0.19 4.2E-06 37.7 8.5 88 54-184 2-89 (90)
30 cd05479 RP_DDI RP_DDI; retrope 93.4 0.65 1.4E-05 37.8 8.8 31 48-80 14-44 (124)
31 cd05484 retropepsin_like_LTR_2 91.5 0.22 4.8E-06 38.1 3.5 28 51-80 1-28 (91)
32 PF13975 gag-asp_proteas: gag- 85.8 1.5 3.2E-05 32.0 4.2 31 48-80 6-36 (72)
33 TIGR02281 clan_AA_DTGA clan AA 85.8 2 4.4E-05 34.8 5.5 40 234-281 5-44 (121)
34 PF13650 Asp_protease_2: Aspar 82.2 2.3 5E-05 31.7 4.2 30 247-281 2-31 (90)
35 PF00077 RVP: Retroviral aspar 79.3 3.1 6.6E-05 32.1 4.1 27 52-80 7-33 (100)
36 PF13975 gag-asp_proteas: gag- 78.1 4.3 9.4E-05 29.5 4.3 30 247-281 12-41 (72)
37 cd05484 retropepsin_like_LTR_2 77.7 4.1 8.9E-05 30.9 4.3 30 247-281 4-33 (91)
38 COG3577 Predicted aspartyl pro 76.2 15 0.00033 32.5 7.7 81 34-149 91-171 (215)
39 cd05483 retropepsin_like_bacte 73.9 6.7 0.00014 29.5 4.6 31 246-281 5-35 (96)
40 cd06095 RP_RTVL_H_like Retrope 67.8 6.9 0.00015 29.4 3.4 25 54-80 2-26 (86)
41 cd06095 RP_RTVL_H_like Retrope 66.3 9.1 0.0002 28.8 3.8 29 248-281 3-31 (86)
42 PF12384 Peptidase_A2B: Ty3 tr 65.5 8.4 0.00018 32.9 3.7 31 50-80 32-62 (177)
43 cd05482 HIV_retropepsin_like R 63.5 10 0.00022 28.9 3.5 25 54-80 2-26 (87)
44 cd05479 RP_DDI RP_DDI; retrope 63.0 12 0.00026 30.3 4.1 29 247-280 20-48 (124)
45 PF00077 RVP: Retroviral aspar 61.8 8.6 0.00019 29.5 3.0 28 246-278 8-35 (100)
46 TIGR03698 clan_AA_DTGF clan AA 53.4 9.9 0.00022 30.0 2.0 21 260-280 17-38 (107)
47 cd05481 retropepsin_like_LTR_1 51.6 18 0.00038 27.8 3.1 23 260-282 11-33 (93)
48 COG5550 Predicted aspartyl pro 51.6 10 0.00023 30.7 1.9 20 262-281 29-49 (125)
49 PF11925 DUF3443: Protein of u 48.7 66 0.0014 31.2 7.1 82 5-96 197-287 (370)
50 COG3577 Predicted aspartyl pro 45.6 59 0.0013 28.9 5.7 40 233-280 98-137 (215)
51 PF09668 Asp_protease: Asparty 45.4 31 0.00068 28.1 3.8 30 246-280 27-56 (124)
52 PF09668 Asp_protease: Asparty 40.2 51 0.0011 26.9 4.3 36 49-87 23-58 (124)
53 cd05471 pepsin_like Pepsin-lik 27.4 94 0.002 28.3 4.5 45 34-80 167-219 (283)
54 TIGR03698 clan_AA_DTGF clan AA 26.1 89 0.0019 24.5 3.5 27 53-79 2-33 (107)
55 cd05476 pepsin_A_like_plant Ch 25.3 1.4E+02 0.003 27.3 5.2 47 34-80 131-193 (265)
56 cd05472 cnd41_like Chloroplast 22.9 81 0.0018 29.4 3.2 47 34-80 131-188 (299)
57 cd05475 nucellin_like Nucellin 22.8 94 0.002 28.7 3.5 43 37-80 146-194 (273)
58 cd06098 phytepsin Phytepsin, a 22.5 1.2E+02 0.0027 28.6 4.4 31 50-80 189-227 (317)
59 cd06096 Plasmepsin_5 Plasmepsi 21.3 1.3E+02 0.0027 28.6 4.2 31 50-80 209-248 (326)
60 cd06097 Aspergillopepsin_like 20.5 1.3E+02 0.0027 27.8 3.9 43 35-80 166-215 (278)
No 1
>PLN03146 aspartyl protease family protein; Provisional
Probab=100.00 E-value=2.4e-52 Score=413.22 Aligned_cols=307 Identities=28% Similarity=0.518 Sum_probs=250.7
Q ss_pred CCeeEEEEEEecCCCcEEEEEEEcCCCceEEeCCCCCCCCCCCCCCCCCCCCC----CCCCCCccccCcCCCCCCCCCCC
Q 016916 47 PTGYYNVTMYIGQPARPYFLDLDTGSDLTWLQCDAPCVRCVEAPHPLYRPSND----LVPCEDPICASLHAPGHHNCEDP 122 (380)
Q Consensus 47 ~~~~y~~~i~vGtP~Q~~~v~~DTGSs~~wv~~~~~c~~C~~~~~~~f~p~~S----~~~c~~~~c~~~~~~~~~~c~~~ 122 (380)
.+++|+++|.||||||++.|++||||+++||+|. +|..|..+.++.|||++| .++|+++.|+.+.. ...|..+
T Consensus 81 ~~~~Y~v~i~iGTPpq~~~vi~DTGS~l~Wv~C~-~C~~C~~~~~~~fdps~SST~~~~~C~s~~C~~~~~--~~~c~~~ 157 (431)
T PLN03146 81 NGGEYLMNISIGTPPVPILAIADTGSDLIWTQCK-PCDDCYKQVSPLFDPKKSSTYKDVSCDSSQCQALGN--QASCSDE 157 (431)
T ss_pred CCccEEEEEEcCCCCceEEEEECCCCCcceEcCC-CCcccccCCCCcccCCCCCCCcccCCCCcccccCCC--CCCCCCC
Confidence 4579999999999999999999999999999999 999999888899999999 38999999987653 2347666
Q ss_pred CCCceeEEeCCCCeEEEEEEEEEEEEeecCC-CcCCCceEEeeeEecCCCCCCCCcceEEeeCCCCCchhhhcccccccc
Q 016916 123 AQCDYELEYADGGSSLGVLVKDAFAFNYTNG-QRLNPRLALGCGYNQVPGASYHPLDGILGLGKGKSSIVSQLHSQKLIR 201 (380)
Q Consensus 123 ~~~~~~i~Y~~Gs~~~G~l~~D~v~l~~~~g-~~~~~~~~FG~~~~~~~~~~~~~~~GIlGLg~~~~s~~~~l~~~g~i~ 201 (380)
+.|.|.+.|++|+.+.|.+++|+|+|++..+ ...++++.|||++...+.+. ...+||||||+..+|++.||... +.
T Consensus 158 ~~c~y~i~Ygdgs~~~G~l~~Dtltlg~~~~~~~~v~~~~FGc~~~~~g~f~-~~~~GilGLG~~~~Sl~sql~~~--~~ 234 (431)
T PLN03146 158 NTCTYSYSYGDGSFTKGNLAVETLTIGSTSGRPVSFPGIVFGCGHNNGGTFD-EKGSGIVGLGGGPLSLISQLGSS--IG 234 (431)
T ss_pred CCCeeEEEeCCCCceeeEEEEEEEEeccCCCCcceeCCEEEeCCCCCCCCcc-CCCceeEecCCCCccHHHHhhHh--hC
Confidence 6799999999998889999999999975321 13578999999987644332 25799999999999999998753 55
Q ss_pred ceeeeeecC-----CCceeEEECCCCCCC-CCcEEeecccCC-CCCeeEEeeEEEECCEEeeeCC--------CCEEEcc
Q 016916 202 NVVGHCLSG-----GGGGFLFFGDDLYDS-SRVVWTSMSSDY-TKYYSPGVAELFFGGETTGLKN--------LPVVFDS 266 (380)
Q Consensus 202 ~~Fs~~l~~-----~~~G~l~~G~~~~~~-g~l~~~pl~~~~-~~~w~v~l~~i~vg~~~~~~~~--------~~aiiDS 266 (380)
++||+||.+ ...|.|+||+..+.. +.+.|+|++... ..+|.|.|++|+||++.+.++. +.+||||
T Consensus 235 ~~FSycL~~~~~~~~~~g~l~fG~~~~~~~~~~~~tPl~~~~~~~~y~V~L~gIsVgg~~l~~~~~~~~~~~~g~~iiDS 314 (431)
T PLN03146 235 GKFSYCLVPLSSDSNGTSKINFGTNAIVSGSGVVSTPLVSKDPDTFYYLTLEAISVGSKKLPYTGSSKNGVEEGNIIIDS 314 (431)
T ss_pred CcEEEECCCCCCCCCCcceEEeCCccccCCCCceEcccccCCCCCeEEEeEEEEEECCEECcCCccccccCCCCcEEEeC
Confidence 699999963 247999999865443 458999998642 2799999999999999876532 4799999
Q ss_pred cccceeeCHHHHHHHHHHHHHHhccCCCccCCCCCCcCcccccccCCccccccccccceEEEEEecCCCCeEEEEcCCeE
Q 016916 267 GSSYTYLNRVTYQTLTSIMKKELSAKSLKEAPEDETLPLCWKGRRPFKNVHDVKKCFRTLALSFTDGKTRTLFELTPEAY 346 (380)
Q Consensus 267 GTs~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~P~l~f~f~g~~~~~~~~l~~~~y 346 (380)
||++++||+++|++|.++|.+++.... .......+++||+... . ..+|+|+|+|+| ++++|++++|
T Consensus 315 GTt~t~Lp~~~y~~l~~~~~~~~~~~~--~~~~~~~~~~C~~~~~------~--~~~P~i~~~F~G----a~~~l~~~~~ 380 (431)
T PLN03146 315 GTTLTLLPSDFYSELESAVEEAIGGER--VSDPQGLLSLCYSSTS------D--IKLPIITAHFTG----ADVKLQPLNT 380 (431)
T ss_pred CccceecCHHHHHHHHHHHHHHhcccc--CCCCCCCCCccccCCC------C--CCCCeEEEEECC----CeeecCccee
Confidence 999999999999999999998886431 1112234578997431 1 358999999996 9999999999
Q ss_pred EEEeCCCeEEEEEEeCCcCCCCCeeEEccccc
Q 016916 347 LIISNKGNVCLGILNGAEVGLQDLNVIGGIGD 378 (380)
Q Consensus 347 ~~~~~~~~~C~~~~~~~~~~~~~~~IlG~~~~ 378 (380)
++...++..|+++.... +.||||++|+
T Consensus 381 ~~~~~~~~~Cl~~~~~~-----~~~IlG~~~q 407 (431)
T PLN03146 381 FVKVSEDLVCFAMIPTS-----SIAIFGNLAQ 407 (431)
T ss_pred EEEcCCCcEEEEEecCC-----CceEECeeeE
Confidence 99877678899987643 3699999976
No 2
>KOG1339 consensus Aspartyl protease [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-50 Score=398.51 Aligned_cols=322 Identities=32% Similarity=0.587 Sum_probs=261.7
Q ss_pred CeEEEEEecCCCCCeeEEEEEEecCCCcEEEEEEEcCCCceEEeCCCCCC-CCCCCCCCCCCCCCC----CCCCCCcccc
Q 016916 35 SSLLFQVHGNVYPTGYYNVTMYIGQPARPYFLDLDTGSDLTWLQCDAPCV-RCVEAPHPLYRPSND----LVPCEDPICA 109 (380)
Q Consensus 35 ~~~~lpl~~~~~~~~~y~~~i~vGtP~Q~~~v~~DTGSs~~wv~~~~~c~-~C~~~~~~~f~p~~S----~~~c~~~~c~ 109 (380)
..+.++.....+..++|+++|.||||||.+.|+|||||+++||+|. +|. .|..+.++.|+|++| .+.|.++.|+
T Consensus 31 ~~~~~~~~~~~~~~~~Y~~~i~IGTPpq~f~v~~DTGS~~lWV~c~-~c~~~C~~~~~~~f~p~~SSt~~~~~c~~~~c~ 109 (398)
T KOG1339|consen 31 SLLPLPESLSSYSSGEYYGNISIGTPPQSFTVVLDTGSDLLWVPCA-PCSSACYSQHNPIFDPSASSTYKSVGCSSPRCK 109 (398)
T ss_pred cccccccccccccccccEEEEecCCCCeeeEEEEeCCCCceeeccc-cccccccccCCCccCccccccccccCCCCcccc
Confidence 3344555556667889999999999999999999999999999999 999 798765566999999 4899999999
Q ss_pred CcCCCCCCCCCCCCCCceeEEeCCCCeEEEEEEEEEEEEeecCCCcCCCceEEeeeEecCCCCCC-CCcceEEeeCCCCC
Q 016916 110 SLHAPGHHNCEDPAQCDYELEYADGGSSLGVLVKDAFAFNYTNGQRLNPRLALGCGYNQVPGASY-HPLDGILGLGKGKS 188 (380)
Q Consensus 110 ~~~~~~~~~c~~~~~~~~~i~Y~~Gs~~~G~l~~D~v~l~~~~g~~~~~~~~FG~~~~~~~~~~~-~~~~GIlGLg~~~~ 188 (380)
.... .|..++.|.|.+.|++|+.++|.+++|+|++++.+ ...++++.|||+......+.. .+.+||||||+..+
T Consensus 110 ~~~~----~~~~~~~C~y~i~Ygd~~~~~G~l~~Dtv~~~~~~-~~~~~~~~FGc~~~~~g~~~~~~~~dGIlGLg~~~~ 184 (398)
T KOG1339|consen 110 SLPQ----SCSPNSSCPYSIQYGDGSSTSGYLATDTVTFGGTT-SLPVPNQTFGCGTNNPGSFGLFAAFDGILGLGRGSL 184 (398)
T ss_pred cccc----CcccCCcCceEEEeCCCCceeEEEEEEEEEEcccc-ccccccEEEEeeecCccccccccccceEeecCCCCc
Confidence 8864 37777899999999998799999999999997422 256778999999988542112 56899999999999
Q ss_pred chhhhccccccccceeeeeecCC-----CceeEEECCCCC--CCCCcEEeecccCCCCCeeEEeeEEEECCEE------e
Q 016916 189 SIVSQLHSQKLIRNVVGHCLSGG-----GGGFLFFGDDLY--DSSRVVWTSMSSDYTKYYSPGVAELFFGGET------T 255 (380)
Q Consensus 189 s~~~~l~~~g~i~~~Fs~~l~~~-----~~G~l~~G~~~~--~~g~l~~~pl~~~~~~~w~v~l~~i~vg~~~------~ 255 (380)
+++.|+.......++||+||.+. .+|.|+||+.++ ..+.+.|+||..+...+|+|.+.+|+|+++. .
T Consensus 185 S~~~q~~~~~~~~~~FS~cL~~~~~~~~~~G~i~fG~~d~~~~~~~l~~tPl~~~~~~~y~v~l~~I~vgg~~~~~~~~~ 264 (398)
T KOG1339|consen 185 SVPSQLPSFYNAINVFSYCLSSNGSPSSGGGSIIFGGVDSSHYTGSLTYTPLLSNPSTYYQVNLDGISVGGKRPIGSSLF 264 (398)
T ss_pred cceeecccccCCceeEEEEeCCCCCCCCCCcEEEECCCcccCcCCceEEEeeccCCCccEEEEEeEEEECCccCCCcceE
Confidence 99999998877777999999854 479999999875 4688999999998534999999999999743 2
Q ss_pred eeCCCCEEEcccccceeeCHHHHHHHHHHHHHHhccCCCccCCCCCCcCcccccccCCccccccccccceEEEEEecCCC
Q 016916 256 GLKNLPVVFDSGSSYTYLNRVTYQTLTSIMKKELSAKSLKEAPEDETLPLCWKGRRPFKNVHDVKKCFRTLALSFTDGKT 335 (380)
Q Consensus 256 ~~~~~~aiiDSGTs~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~P~l~f~f~g~~~ 335 (380)
..+..++|+||||++++||.++|++|.++|.++.. . .......+..|+...... ..+|.|+|+|++
T Consensus 265 ~~~~~~~iiDSGTs~t~lp~~~y~~i~~~~~~~~~---~-~~~~~~~~~~C~~~~~~~-------~~~P~i~~~f~~--- 330 (398)
T KOG1339|consen 265 CTDGGGAIIDSGTSLTYLPTSAYNALREAIGAEVS---V-VGTDGEYFVPCFSISTSG-------VKLPDITFHFGG--- 330 (398)
T ss_pred ecCCCCEEEECCcceeeccHHHHHHHHHHHHhhee---c-cccCCceeeecccCCCCc-------ccCCcEEEEECC---
Confidence 22248899999999999999999999999988641 0 011233556899865311 348999999996
Q ss_pred CeEEEEcCCeEEEEeCCCeE-EEEEEeCCcCCCCCeeEEccccc
Q 016916 336 RTLFELTPEAYLIISNKGNV-CLGILNGAEVGLQDLNVIGGIGD 378 (380)
Q Consensus 336 ~~~~~l~~~~y~~~~~~~~~-C~~~~~~~~~~~~~~~IlG~~~~ 378 (380)
++.|.+++++|+++..++.. |++++...... ..||||++++
T Consensus 331 g~~~~l~~~~y~~~~~~~~~~Cl~~~~~~~~~--~~~ilG~~~~ 372 (398)
T KOG1339|consen 331 GAVFSLPPKNYLVEVSDGGGVCLAFFNGMDSG--PLWILGDVFQ 372 (398)
T ss_pred CcEEEeCccceEEEECCCCCceeeEEecCCCC--ceEEEchHHh
Confidence 59999999999998766544 99888766322 4899999875
No 3
>PTZ00165 aspartyl protease; Provisional
Probab=100.00 E-value=2.5e-47 Score=379.73 Aligned_cols=285 Identities=21% Similarity=0.388 Sum_probs=225.2
Q ss_pred CCCeeEEEEEEecCCCcEEEEEEEcCCCceEEeCCCCCCCCCCCCCCCCCCCCCCCCCCCccccCcCCCCCCCCCCCCCC
Q 016916 46 YPTGYYNVTMYIGQPARPYFLDLDTGSDLTWLQCDAPCVRCVEAPHPLYRPSNDLVPCEDPICASLHAPGHHNCEDPAQC 125 (380)
Q Consensus 46 ~~~~~y~~~i~vGtP~Q~~~v~~DTGSs~~wv~~~~~c~~C~~~~~~~f~p~~S~~~c~~~~c~~~~~~~~~~c~~~~~~ 125 (380)
|.+.+|+++|+||||||++.|+|||||+++||+|. .|..|.+..|+.|||++|+. ++... ...+..
T Consensus 116 ~~d~~Y~~~I~IGTPpQ~f~Vv~DTGSS~lWVps~-~C~~~~C~~~~~yd~s~SST------y~~~~-------~~~~~~ 181 (482)
T PTZ00165 116 FHNSQYFGEIQVGTPPKSFVVVFDTGSSNLWIPSK-ECKSGGCAPHRKFDPKKSST------YTKLK-------LGDESA 181 (482)
T ss_pred ccCCeEEEEEEeCCCCceEEEEEeCCCCCEEEEch-hcCcccccccCCCCccccCC------cEecC-------CCCccc
Confidence 56889999999999999999999999999999999 89865445688999999952 22211 000122
Q ss_pred ceeEEeCCCCeEEEEEEEEEEEEeecCCCcCCCceEEeeeEecCCC-CCCCCcceEEeeCCCCC---------chhhhcc
Q 016916 126 DYELEYADGGSSLGVLVKDAFAFNYTNGQRLNPRLALGCGYNQVPG-ASYHPLDGILGLGKGKS---------SIVSQLH 195 (380)
Q Consensus 126 ~~~i~Y~~Gs~~~G~l~~D~v~l~~~~g~~~~~~~~FG~~~~~~~~-~~~~~~~GIlGLg~~~~---------s~~~~l~ 195 (380)
.+.+.|++| ++.|.+++|+|+|+ +..++++.||+++..... +....+|||||||++.. +++.+|+
T Consensus 182 ~~~i~YGsG-s~~G~l~~DtV~ig----~l~i~~q~FG~a~~~s~~~f~~~~~DGILGLg~~~~s~~s~~~~~p~~~~l~ 256 (482)
T PTZ00165 182 ETYIQYGTG-ECVLALGKDTVKIG----GLKVKHQSIGLAIEESLHPFADLPFDGLVGLGFPDKDFKESKKALPIVDNIK 256 (482)
T ss_pred eEEEEeCCC-cEEEEEEEEEEEEC----CEEEccEEEEEEEeccccccccccccceeecCCCcccccccCCCCCHHHHHH
Confidence 578999999 68899999999995 577899999999886432 55567899999998753 4677899
Q ss_pred ccccc-cceeeeeecC--CCceeEEECCCCC--C--CCCcEEeecccCCCCCeeEEeeEEEECCEEeee--CCCCEEEcc
Q 016916 196 SQKLI-RNVVGHCLSG--GGGGFLFFGDDLY--D--SSRVVWTSMSSDYTKYYSPGVAELFFGGETTGL--KNLPVVFDS 266 (380)
Q Consensus 196 ~~g~i-~~~Fs~~l~~--~~~G~l~~G~~~~--~--~g~l~~~pl~~~~~~~w~v~l~~i~vg~~~~~~--~~~~aiiDS 266 (380)
+||++ +++||+||.+ ..+|+|+|||+|+ . .+++.|+|+... .||+|.+++|++|++.+.. ....||+||
T Consensus 257 ~qgli~~~~FS~yL~~~~~~~G~l~fGGiD~~~~~~~g~i~~~Pv~~~--~yW~i~l~~i~vgg~~~~~~~~~~~aIiDT 334 (482)
T PTZ00165 257 KQNLLKRNIFSFYMSKDLNQPGSISFGSADPKYTLEGHKIWWFPVIST--DYWEIEVVDILIDGKSLGFCDRKCKAAIDT 334 (482)
T ss_pred HcCCcccceEEEEeccCCCCCCEEEeCCcCHHHcCCCCceEEEEcccc--ceEEEEeCeEEECCEEeeecCCceEEEEcC
Confidence 99999 8999999974 3579999999974 2 478999999886 6999999999999987654 357899999
Q ss_pred cccceeeCHHHHHHHHHHHHHHhccCCCccCCCCCCcCcccccccCCccccccccccceEEEEEecC-CCCeEEEEcCCe
Q 016916 267 GSSYTYLNRVTYQTLTSIMKKELSAKSLKEAPEDETLPLCWKGRRPFKNVHDVKKCFRTLALSFTDG-KTRTLFELTPEA 345 (380)
Q Consensus 267 GTs~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~P~l~f~f~g~-~~~~~~~l~~~~ 345 (380)
||+++++|++++++|.+++... .+|++. ..+|+|+|+|+|. +..++|.|+|++
T Consensus 335 GTSli~lP~~~~~~i~~~i~~~---------------~~C~~~-----------~~lP~itf~f~g~~g~~v~~~l~p~d 388 (482)
T PTZ00165 335 GSSLITGPSSVINPLLEKIPLE---------------EDCSNK-----------DSLPRISFVLEDVNGRKIKFDMDPED 388 (482)
T ss_pred CCccEeCCHHHHHHHHHHcCCc---------------cccccc-----------ccCCceEEEECCCCCceEEEEEchHH
Confidence 9999999999999888776321 258764 2589999999862 123489999999
Q ss_pred EEEEe----CCCeEEE-EEEeCCcCC-CCCeeEEcccc
Q 016916 346 YLIIS----NKGNVCL-GILNGAEVG-LQDLNVIGGIG 377 (380)
Q Consensus 346 y~~~~----~~~~~C~-~~~~~~~~~-~~~~~IlG~~~ 377 (380)
|+++. ..+..|+ ++...+..+ .+..|||||++
T Consensus 389 Yi~~~~~~~~~~~~C~~g~~~~d~~~~~g~~~ILGd~F 426 (482)
T PTZ00165 389 YVIEEGDSEEQEHQCVIGIIPMDVPAPRGPLFVLGNNF 426 (482)
T ss_pred eeeecccCCCCCCeEEEEEEECCCCCCCCceEEEchhh
Confidence 99974 2345897 676543221 24589999975
No 4
>cd05490 Cathepsin_D2 Cathepsin_D2, pepsin family of proteinases. Cathepsin D is the major aspartic proteinase of the lysosomal compartment where it functions in protein catabolism. It is a member of the pepsin family of proteinases. This enzyme is distinguished from other members of the pepsin family by two features that are characteristic of lysosomal hydrolases. First, mature Cathepsin D is found predominantly in a two-chain form due to a posttranslational cleavage event. Second, it contains phosphorylated, N-linked oligosaccharides that target the enzyme to lysosomes via mannose-6-phosphate receptors. Cathepsin D preferentially attacks peptide bonds flanked by bulky hydrophobic amino acids and its pH optimum is between pH 2.8 and 4.0. Two active site aspartic acid residues are essential for the catalytic activity of aspartic proteinases. Like other aspartic proteinases, Cathepsin D is a bilobed molecule; the two evolutionary related lobes are mostly made up of beta-sheets and flank
Probab=100.00 E-value=1.3e-46 Score=361.07 Aligned_cols=282 Identities=21% Similarity=0.318 Sum_probs=222.9
Q ss_pred CCCeeEEEEEEecCCCcEEEEEEEcCCCceEEeCCCCCC----CCCCCCCCCCCCCCCCCCCCCccccCcCCCCCCCCCC
Q 016916 46 YPTGYYNVTMYIGQPARPYFLDLDTGSDLTWLQCDAPCV----RCVEAPHPLYRPSNDLVPCEDPICASLHAPGHHNCED 121 (380)
Q Consensus 46 ~~~~~y~~~i~vGtP~Q~~~v~~DTGSs~~wv~~~~~c~----~C~~~~~~~f~p~~S~~~c~~~~c~~~~~~~~~~c~~ 121 (380)
+.+.+|+++|+||||||++.|+|||||+++||+|. .|. .|. .++.|+|++|+ +++.
T Consensus 2 ~~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~-~C~~~~~~C~--~~~~y~~~~Ss------T~~~----------- 61 (325)
T cd05490 2 YMDAQYYGEIGIGTPPQTFTVVFDTGSSNLWVPSV-HCSLLDIACW--LHHKYNSSKSS------TYVK----------- 61 (325)
T ss_pred CcCCEEEEEEEECCCCcEEEEEEeCCCccEEEEcC-CCCCCCcccc--CcCcCCcccCc------ceee-----------
Confidence 34679999999999999999999999999999998 897 454 47899999885 1111
Q ss_pred CCCCceeEEeCCCCeEEEEEEEEEEEEeecCCCcCCCceEEeeeEecCCC-CCCCCcceEEeeCCCCCc------hhhhc
Q 016916 122 PAQCDYELEYADGGSSLGVLVKDAFAFNYTNGQRLNPRLALGCGYNQVPG-ASYHPLDGILGLGKGKSS------IVSQL 194 (380)
Q Consensus 122 ~~~~~~~i~Y~~Gs~~~G~l~~D~v~l~~~~g~~~~~~~~FG~~~~~~~~-~~~~~~~GIlGLg~~~~s------~~~~l 194 (380)
..|.|.+.|++| ++.|.+++|+|+|+ +..++++.|||++..... +.....+||||||++..+ ++++|
T Consensus 62 -~~~~~~i~Yg~G-~~~G~~~~D~v~~g----~~~~~~~~Fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~l 135 (325)
T cd05490 62 -NGTEFAIQYGSG-SLSGYLSQDTVSIG----GLQVEGQLFGEAVKQPGITFIAAKFDGILGMAYPRISVDGVTPVFDNI 135 (325)
T ss_pred -CCcEEEEEECCc-EEEEEEeeeEEEEC----CEEEcCEEEEEEeeccCCcccceeeeEEEecCCccccccCCCCHHHHH
Confidence 357999999999 68999999999995 467889999999876432 334568999999987543 56789
Q ss_pred cccccc-cceeeeeecCC----CceeEEECCCCC--CCCCcEEeecccCCCCCeeEEeeEEEECCEEeee-CCCCEEEcc
Q 016916 195 HSQKLI-RNVVGHCLSGG----GGGFLFFGDDLY--DSSRVVWTSMSSDYTKYYSPGVAELFFGGETTGL-KNLPVVFDS 266 (380)
Q Consensus 195 ~~~g~i-~~~Fs~~l~~~----~~G~l~~G~~~~--~~g~l~~~pl~~~~~~~w~v~l~~i~vg~~~~~~-~~~~aiiDS 266 (380)
+++|.| +++||+||.+. .+|+|+||+++. +.+++.|+|+.+. .+|.|.+++|+||+..... ....+||||
T Consensus 136 ~~~g~i~~~~FS~~L~~~~~~~~~G~l~~Gg~d~~~~~g~l~~~~~~~~--~~w~v~l~~i~vg~~~~~~~~~~~aiiDS 213 (325)
T cd05490 136 MAQKLVEQNVFSFYLNRDPDAQPGGELMLGGTDPKYYTGDLHYVNVTRK--AYWQIHMDQVDVGSGLTLCKGGCEAIVDT 213 (325)
T ss_pred HhcCCCCCCEEEEEEeCCCCCCCCCEEEECccCHHHcCCceEEEEcCcc--eEEEEEeeEEEECCeeeecCCCCEEEECC
Confidence 999999 89999999742 369999999874 5799999999875 6999999999999875433 346899999
Q ss_pred cccceeeCHHHHHHHHHHHHHHhccCCCccCCCCCCcCcccccccCCccccccccccceEEEEEecCCCCeEEEEcCCeE
Q 016916 267 GSSYTYLNRVTYQTLTSIMKKELSAKSLKEAPEDETLPLCWKGRRPFKNVHDVKKCFRTLALSFTDGKTRTLFELTPEAY 346 (380)
Q Consensus 267 GTs~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~P~l~f~f~g~~~~~~~~l~~~~y 346 (380)
||+++++|++++++|.+++.+. . .. ......+|+.. ..+|+|+|+|+| +.++|+|++|
T Consensus 214 GTt~~~~p~~~~~~l~~~~~~~-~-----~~-~~~~~~~C~~~-----------~~~P~i~f~fgg----~~~~l~~~~y 271 (325)
T cd05490 214 GTSLITGPVEEVRALQKAIGAV-P-----LI-QGEYMIDCEKI-----------PTLPVISFSLGG----KVYPLTGEDY 271 (325)
T ss_pred CCccccCCHHHHHHHHHHhCCc-c-----cc-CCCEEeccccc-----------ccCCCEEEEECC----EEEEEChHHe
Confidence 9999999999999999887532 1 11 12234578754 248999999986 9999999999
Q ss_pred EEEeCC--CeEEEE-EEeCCcC-CCCCeeEEcccc
Q 016916 347 LIISNK--GNVCLG-ILNGAEV-GLQDLNVIGGIG 377 (380)
Q Consensus 347 ~~~~~~--~~~C~~-~~~~~~~-~~~~~~IlG~~~ 377 (380)
+++..+ ...|+. +...... .....||||+++
T Consensus 272 ~~~~~~~~~~~C~~~~~~~~~~~~~~~~~ilGd~f 306 (325)
T cd05490 272 ILKVSQRGTTICLSGFMGLDIPPPAGPLWILGDVF 306 (325)
T ss_pred EEeccCCCCCEEeeEEEECCCCCCCCceEEEChHh
Confidence 997643 357984 5443211 124589999975
No 5
>cd05478 pepsin_A Pepsin A, aspartic protease produced in gastric mucosa of mammals. Pepsin, a well-known aspartic protease, is produced by the human gastric mucosa in seven different zymogen isoforms, subdivided into two types: pepsinogen A and pepsinogen C. The prosequence of the zymogens are self cleaved under acidic pH. The mature enzymes are called pepsin A and pepsin C, correspondingly. The well researched porcine pepsin is also in this pepsin A family. Pepsins play an integral role in the digestion process of vertebrates. Pepsins are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. More recently evolved enzymes have similar three-dimensional structures, however their amino acid sequences are more divergent except for the conserved catalytic site motif. Pepsins specifically cleave bonds in peptides which
Probab=100.00 E-value=1.3e-46 Score=359.83 Aligned_cols=278 Identities=20% Similarity=0.341 Sum_probs=224.0
Q ss_pred CCeeEEEEEEecCCCcEEEEEEEcCCCceEEeCCCCCCCCCCCCCCCCCCCCCCCCCCCccccCcCCCCCCCCCCCCCCc
Q 016916 47 PTGYYNVTMYIGQPARPYFLDLDTGSDLTWLQCDAPCVRCVEAPHPLYRPSNDLVPCEDPICASLHAPGHHNCEDPAQCD 126 (380)
Q Consensus 47 ~~~~y~~~i~vGtP~Q~~~v~~DTGSs~~wv~~~~~c~~C~~~~~~~f~p~~S~~~c~~~~c~~~~~~~~~~c~~~~~~~ 126 (380)
.+.+|+++|.||||||++.|+|||||+++||+|. .|..|.+..++.|+|++|+. ++. ..+.
T Consensus 7 ~~~~Y~~~i~vGtp~q~~~v~~DTGS~~~wv~~~-~C~~~~c~~~~~f~~~~Sst------~~~------------~~~~ 67 (317)
T cd05478 7 LDMEYYGTISIGTPPQDFTVIFDTGSSNLWVPSV-YCSSQACSNHNRFNPRQSST------YQS------------TGQP 67 (317)
T ss_pred cCCEEEEEEEeCCCCcEEEEEEeCCCccEEEecC-CCCcccccccCcCCCCCCcc------eee------------CCcE
Confidence 3679999999999999999999999999999999 89865555688999998851 221 3568
Q ss_pred eeEEeCCCCeEEEEEEEEEEEEeecCCCcCCCceEEeeeEecCCCC-CCCCcceEEeeCCCCC------chhhhcccccc
Q 016916 127 YELEYADGGSSLGVLVKDAFAFNYTNGQRLNPRLALGCGYNQVPGA-SYHPLDGILGLGKGKS------SIVSQLHSQKL 199 (380)
Q Consensus 127 ~~i~Y~~Gs~~~G~l~~D~v~l~~~~g~~~~~~~~FG~~~~~~~~~-~~~~~~GIlGLg~~~~------s~~~~l~~~g~ 199 (380)
+++.|++| ++.|.+++|+|+|+ +..++++.|||++.....+ .....+||||||+... +++.+|+++|+
T Consensus 68 ~~~~yg~g-s~~G~~~~D~v~ig----~~~i~~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~L~~~g~ 142 (317)
T cd05478 68 LSIQYGTG-SMTGILGYDTVQVG----GISDTNQIFGLSETEPGSFFYYAPFDGILGLAYPSIASSGATPVFDNMMSQGL 142 (317)
T ss_pred EEEEECCc-eEEEEEeeeEEEEC----CEEECCEEEEEEEecCccccccccccceeeeccchhcccCCCCHHHHHHhCCC
Confidence 99999999 58999999999995 4678899999998764332 2345799999998743 47889999999
Q ss_pred c-cceeeeeecCC--CceeEEECCCCC--CCCCcEEeecccCCCCCeeEEeeEEEECCEEeeeC-CCCEEEcccccceee
Q 016916 200 I-RNVVGHCLSGG--GGGFLFFGDDLY--DSSRVVWTSMSSDYTKYYSPGVAELFFGGETTGLK-NLPVVFDSGSSYTYL 273 (380)
Q Consensus 200 i-~~~Fs~~l~~~--~~G~l~~G~~~~--~~g~l~~~pl~~~~~~~w~v~l~~i~vg~~~~~~~-~~~aiiDSGTs~~~l 273 (380)
| +++||+||.+. .+|+|+||+++. +.|+++|+|+... .+|.|.+++|+++++.+... +..+||||||++++|
T Consensus 143 i~~~~FS~~L~~~~~~~g~l~~Gg~d~~~~~g~l~~~p~~~~--~~w~v~l~~v~v~g~~~~~~~~~~~iiDTGts~~~l 220 (317)
T cd05478 143 VSQDLFSVYLSSNGQQGSVVTFGGIDPSYYTGSLNWVPVTAE--TYWQITVDSVTINGQVVACSGGCQAIVDTGTSLLVG 220 (317)
T ss_pred CCCCEEEEEeCCCCCCCeEEEEcccCHHHccCceEEEECCCC--cEEEEEeeEEEECCEEEccCCCCEEEECCCchhhhC
Confidence 9 89999999864 479999999864 5799999999875 69999999999999988653 458999999999999
Q ss_pred CHHHHHHHHHHHHHHhccCCCccCCCCCCcCcccccccCCccccccccccceEEEEEecCCCCeEEEEcCCeEEEEeCCC
Q 016916 274 NRVTYQTLTSIMKKELSAKSLKEAPEDETLPLCWKGRRPFKNVHDVKKCFRTLALSFTDGKTRTLFELTPEAYLIISNKG 353 (380)
Q Consensus 274 p~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~P~l~f~f~g~~~~~~~~l~~~~y~~~~~~~ 353 (380)
|+++|++|.+++..... . ......+|+.. ..+|.|+|+|+| ++++|+|++|+++. .
T Consensus 221 p~~~~~~l~~~~~~~~~-----~--~~~~~~~C~~~-----------~~~P~~~f~f~g----~~~~i~~~~y~~~~--~ 276 (317)
T cd05478 221 PSSDIANIQSDIGASQN-----Q--NGEMVVNCSSI-----------SSMPDVVFTING----VQYPLPPSAYILQD--Q 276 (317)
T ss_pred CHHHHHHHHHHhCCccc-----c--CCcEEeCCcCc-----------ccCCcEEEEECC----EEEEECHHHheecC--C
Confidence 99999999988854321 1 11122468753 258999999975 99999999999864 5
Q ss_pred eEEEE-EEeCCcCCCCCeeEEcccc
Q 016916 354 NVCLG-ILNGAEVGLQDLNVIGGIG 377 (380)
Q Consensus 354 ~~C~~-~~~~~~~~~~~~~IlG~~~ 377 (380)
..|+. +.... ..+.||||+.+
T Consensus 277 ~~C~~~~~~~~---~~~~~IlG~~f 298 (317)
T cd05478 277 GSCTSGFQSMG---LGELWILGDVF 298 (317)
T ss_pred CEEeEEEEeCC---CCCeEEechHH
Confidence 68985 54433 13579999965
No 6
>cd05486 Cathespin_E Cathepsin E, non-lysosomal aspartic protease. Cathepsin E is an intracellular, non-lysosomal aspartic protease expressed in a variety of cells and tissues. The protease has proposed physiological roles in antigen presentation by the MHC class II system, in the biogenesis of the vasoconstrictor peptide endothelin, and in neurodegeneration associated with brain ischemia and aging. Cathepsin E is the only A1 aspartic protease that exists as a homodimer with a disulfide bridge linking the two monomers. Like many other aspartic proteases, it is synthesized as a zymogen which is catalytically inactive towards its natural substrates at neutral pH and which auto-activates in an acidic environment. The overall structure follows the general fold of aspartic proteases of the A1 family, it is composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalyt
Probab=100.00 E-value=1.3e-46 Score=359.72 Aligned_cols=276 Identities=19% Similarity=0.318 Sum_probs=219.3
Q ss_pred EEEEEEecCCCcEEEEEEEcCCCceEEeCCCCCC--CCCCCCCCCCCCCCCCCCCCCccccCcCCCCCCCCCCCCCCcee
Q 016916 51 YNVTMYIGQPARPYFLDLDTGSDLTWLQCDAPCV--RCVEAPHPLYRPSNDLVPCEDPICASLHAPGHHNCEDPAQCDYE 128 (380)
Q Consensus 51 y~~~i~vGtP~Q~~~v~~DTGSs~~wv~~~~~c~--~C~~~~~~~f~p~~S~~~c~~~~c~~~~~~~~~~c~~~~~~~~~ 128 (380)
|+++|+||||||+++|+|||||+++||+|. .|. .|. .++.|+|++|+. |+ ...|.|+
T Consensus 1 Y~~~i~iGtP~Q~~~v~~DTGSs~~Wv~s~-~C~~~~C~--~~~~y~~~~SsT------~~------------~~~~~~~ 59 (316)
T cd05486 1 YFGQISIGTPPQNFTVIFDTGSSNLWVPSI-YCTSQACT--KHNRFQPSESST------YV------------SNGEAFS 59 (316)
T ss_pred CeEEEEECCCCcEEEEEEcCCCccEEEecC-CCCCcccC--ccceECCCCCcc------cc------------cCCcEEE
Confidence 799999999999999999999999999999 897 465 478899998851 22 1467999
Q ss_pred EEeCCCCeEEEEEEEEEEEEeecCCCcCCCceEEeeeEecCCC-CCCCCcceEEeeCCCCCc------hhhhccccccc-
Q 016916 129 LEYADGGSSLGVLVKDAFAFNYTNGQRLNPRLALGCGYNQVPG-ASYHPLDGILGLGKGKSS------IVSQLHSQKLI- 200 (380)
Q Consensus 129 i~Y~~Gs~~~G~l~~D~v~l~~~~g~~~~~~~~FG~~~~~~~~-~~~~~~~GIlGLg~~~~s------~~~~l~~~g~i- 200 (380)
+.|++| .+.|.+++|+|+|+ ...++++.|||+...... +.....+||||||++..+ ++.+|++||+|
T Consensus 60 i~Yg~g-~~~G~~~~D~v~ig----~~~~~~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~p~~~~l~~qg~i~ 134 (316)
T cd05486 60 IQYGTG-SLTGIIGIDQVTVE----GITVQNQQFAESVSEPGSTFQDSEFDGILGLAYPSLAVDGVTPVFDNMMAQNLVE 134 (316)
T ss_pred EEeCCc-EEEEEeeecEEEEC----CEEEcCEEEEEeeccCcccccccccceEeccCchhhccCCCCCHHHHHHhcCCCC
Confidence 999999 68999999999995 467889999998765432 334568999999987644 57789999999
Q ss_pred cceeeeeecCC----CceeEEECCCCC--CCCCcEEeecccCCCCCeeEEeeEEEECCEEeeeC-CCCEEEcccccceee
Q 016916 201 RNVVGHCLSGG----GGGFLFFGDDLY--DSSRVVWTSMSSDYTKYYSPGVAELFFGGETTGLK-NLPVVFDSGSSYTYL 273 (380)
Q Consensus 201 ~~~Fs~~l~~~----~~G~l~~G~~~~--~~g~l~~~pl~~~~~~~w~v~l~~i~vg~~~~~~~-~~~aiiDSGTs~~~l 273 (380)
+++||+||.++ ..|+|+||+++. +.|++.|+|+... .+|.|.+++|+++++.+... ...+||||||+++++
T Consensus 135 ~~~FS~~L~~~~~~~~~g~l~fGg~d~~~~~g~l~~~pi~~~--~~w~v~l~~i~v~g~~~~~~~~~~aiiDTGTs~~~l 212 (316)
T cd05486 135 LPMFSVYMSRNPNSADGGELVFGGFDTSRFSGQLNWVPVTVQ--GYWQIQLDNIQVGGTVIFCSDGCQAIVDTGTSLITG 212 (316)
T ss_pred CCEEEEEEccCCCCCCCcEEEEcccCHHHcccceEEEECCCc--eEEEEEeeEEEEecceEecCCCCEEEECCCcchhhc
Confidence 89999999742 479999999864 5799999999875 79999999999999876543 468999999999999
Q ss_pred CHHHHHHHHHHHHHHhccCCCccCCCCCCcCcccccccCCccccccccccceEEEEEecCCCCeEEEEcCCeEEEEeC--
Q 016916 274 NRVTYQTLTSIMKKELSAKSLKEAPEDETLPLCWKGRRPFKNVHDVKKCFRTLALSFTDGKTRTLFELTPEAYLIISN-- 351 (380)
Q Consensus 274 p~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~P~l~f~f~g~~~~~~~~l~~~~y~~~~~-- 351 (380)
|++++++|.+.+.+.. . ......+|... ..+|+|+|+|+| +.++|+|++|++...
T Consensus 213 P~~~~~~l~~~~~~~~-------~-~~~~~~~C~~~-----------~~~p~i~f~f~g----~~~~l~~~~y~~~~~~~ 269 (316)
T cd05486 213 PSGDIKQLQNYIGATA-------T-DGEYGVDCSTL-----------SLMPSVTFTING----IPYSLSPQAYTLEDQSD 269 (316)
T ss_pred CHHHHHHHHHHhCCcc-------c-CCcEEEecccc-----------ccCCCEEEEECC----EEEEeCHHHeEEecccC
Confidence 9999999887764321 1 11123468653 258999999986 999999999998752
Q ss_pred CCeEEE-EEEeCCc-CCCCCeeEEcccc
Q 016916 352 KGNVCL-GILNGAE-VGLQDLNVIGGIG 377 (380)
Q Consensus 352 ~~~~C~-~~~~~~~-~~~~~~~IlG~~~ 377 (380)
.+..|+ ++..... ....+.||||+.+
T Consensus 270 ~~~~C~~~~~~~~~~~~~~~~~ILGd~f 297 (316)
T cd05486 270 GGGYCSSGFQGLDIPPPAGPLWILGDVF 297 (316)
T ss_pred CCCEEeeEEEECCCCCCCCCeEEEchHH
Confidence 345898 4543321 1123589999974
No 7
>cd05475 nucellin_like Nucellins, plant aspartic proteases specifically expressed in nucellar cells during degradation. Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. This degradation is a characteristic of programmed cell death. Nucellins are plant aspartic proteases specifically expressed in nucellar cells during degradation. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region, and two other regions nearly identical to two regions of plant aspartic proteases. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. Although the three-dimensional structures of the two lobes are very similar, the amino acid sequences are more d
Probab=100.00 E-value=3.9e-46 Score=349.15 Aligned_cols=249 Identities=64% Similarity=1.138 Sum_probs=206.8
Q ss_pred eeEEEEEEecCCCcEEEEEEEcCCCceEEeCCCCCCCCCCCCCCCCCCCCCCCCCCCccccCcCCCCCCCCCCCCCCcee
Q 016916 49 GYYNVTMYIGQPARPYFLDLDTGSDLTWLQCDAPCVRCVEAPHPLYRPSNDLVPCEDPICASLHAPGHHNCEDPAQCDYE 128 (380)
Q Consensus 49 ~~y~~~i~vGtP~Q~~~v~~DTGSs~~wv~~~~~c~~C~~~~~~~f~p~~S~~~c~~~~c~~~~~~~~~~c~~~~~~~~~ 128 (380)
++|+++|+||||||++.|+|||||+++||+|..+|..| .|.|+
T Consensus 1 ~~Y~~~i~iGtP~q~~~v~~DTGS~~~Wv~c~~~c~~c-------------------------------------~c~~~ 43 (273)
T cd05475 1 GYYYVTINIGNPPKPYFLDIDTGSDLTWLQCDAPCTGC-------------------------------------QCDYE 43 (273)
T ss_pred CceEEEEEcCCCCeeEEEEEccCCCceEEeCCCCCCCC-------------------------------------cCccE
Confidence 47999999999999999999999999999984245443 35789
Q ss_pred EEeCCCCeEEEEEEEEEEEEeecCCCcCCCceEEeeeEecCCC--CCCCCcceEEeeCCCCCchhhhccccccccceeee
Q 016916 129 LEYADGGSSLGVLVKDAFAFNYTNGQRLNPRLALGCGYNQVPG--ASYHPLDGILGLGKGKSSIVSQLHSQKLIRNVVGH 206 (380)
Q Consensus 129 i~Y~~Gs~~~G~l~~D~v~l~~~~g~~~~~~~~FG~~~~~~~~--~~~~~~~GIlGLg~~~~s~~~~l~~~g~i~~~Fs~ 206 (380)
+.|++|+.+.|.+++|+|+|+..++...++++.|||+...... ......+||||||+...++++||+++++|+++||+
T Consensus 44 i~Ygd~~~~~G~~~~D~v~~~~~~~~~~~~~~~Fgc~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~ql~~~~~i~~~Fs~ 123 (273)
T cd05475 44 IEYADGGSSMGVLVTDIFSLKLTNGSRAKPRIAFGCGYDQQGPLLNPPPPTDGILGLGRGKISLPSQLASQGIIKNVIGH 123 (273)
T ss_pred eEeCCCCceEEEEEEEEEEEeecCCCcccCCEEEEeeeccCCcccCCCccCCEEEECCCCCCCHHHHHHhcCCcCceEEE
Confidence 9999888999999999999976555567789999999776432 23356899999999999999999999988999999
Q ss_pred eecCCCceeEEECCCCCCCCCcEEeecccCCC-CCeeEEeeEEEECCEEeeeCCCCEEEcccccceeeCHHHHHHHHHHH
Q 016916 207 CLSGGGGGFLFFGDDLYDSSRVVWTSMSSDYT-KYYSPGVAELFFGGETTGLKNLPVVFDSGSSYTYLNRVTYQTLTSIM 285 (380)
Q Consensus 207 ~l~~~~~G~l~~G~~~~~~g~l~~~pl~~~~~-~~w~v~l~~i~vg~~~~~~~~~~aiiDSGTs~~~lp~~~~~~l~~~i 285 (380)
||.+..+|.|+||+..+..+++.|+|+.+.+. .+|.|++.+|+||++........+||||||++++||+++|
T Consensus 124 ~l~~~~~g~l~~G~~~~~~g~i~ytpl~~~~~~~~y~v~l~~i~vg~~~~~~~~~~~ivDTGTt~t~lp~~~y------- 196 (273)
T cd05475 124 CLSSNGGGFLFFGDDLVPSSGVTWTPMRRESQKKHYSPGPASLLFNGQPTGGKGLEVVFDSGSSYTYFNAQAY------- 196 (273)
T ss_pred EccCCCCeEEEECCCCCCCCCeeecccccCCCCCeEEEeEeEEEECCEECcCCCceEEEECCCceEEcCCccc-------
Confidence 99876689999997766678999999987622 6999999999999997665567899999999999998865
Q ss_pred HHHhccCCCccCCCCCCcCcccccccCCccccccccccceEEEEEecCCCCeEEEEcCCeEEEEeCCCeEEEEEEeCCcC
Q 016916 286 KKELSAKSLKEAPEDETLPLCWKGRRPFKNVHDVKKCFRTLALSFTDGKTRTLFELTPEAYLIISNKGNVCLGILNGAEV 365 (380)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~P~l~f~f~g~~~~~~~~l~~~~y~~~~~~~~~C~~~~~~~~~ 365 (380)
+|+|+|+|++...+++++|+|++|++...++..|++++.....
T Consensus 197 -------------------------------------~p~i~~~f~~~~~~~~~~l~~~~y~~~~~~~~~Cl~~~~~~~~ 239 (273)
T cd05475 197 -------------------------------------FKPLTLKFGKGWRTRLLEIPPENYLIISEKGNVCLGILNGSEI 239 (273)
T ss_pred -------------------------------------cccEEEEECCCCceeEEEeCCCceEEEcCCCCEEEEEecCCCc
Confidence 2678999986111279999999999986667789998865532
Q ss_pred CCCCeeEEccccc
Q 016916 366 GLQDLNVIGGIGD 378 (380)
Q Consensus 366 ~~~~~~IlG~~~~ 378 (380)
.....||||+.+.
T Consensus 240 ~~~~~~ilG~~~l 252 (273)
T cd05475 240 GLGNTNIIGDISM 252 (273)
T ss_pred CCCceEEECceEE
Confidence 2245899999874
No 8
>cd05472 cnd41_like Chloroplast Nucleoids DNA-binding Protease, catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco. Antisense tobacco with reduced amount of CND41 maintained green leaves and constant protein levels, especially Rubisco. CND41 has DNA-binding as well as aspartic protease activities. The pepsin-like aspartic protease domain is located at the C-terminus of the protein. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. This fami
Probab=100.00 E-value=4.3e-46 Score=353.49 Aligned_cols=265 Identities=31% Similarity=0.522 Sum_probs=214.6
Q ss_pred eEEEEEEecCCCcEEEEEEEcCCCceEEeCCCCCCCCCCCCCCCCCCCCCCCCCCCccccCcCCCCCCCCCCCCCCceeE
Q 016916 50 YYNVTMYIGQPARPYFLDLDTGSDLTWLQCDAPCVRCVEAPHPLYRPSNDLVPCEDPICASLHAPGHHNCEDPAQCDYEL 129 (380)
Q Consensus 50 ~y~~~i~vGtP~Q~~~v~~DTGSs~~wv~~~~~c~~C~~~~~~~f~p~~S~~~c~~~~c~~~~~~~~~~c~~~~~~~~~i 129 (380)
+|+++|.||||||++.|+|||||+++||+|. +| |.|.+
T Consensus 1 ~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~c~-~c-----------------------------------------~~~~i 38 (299)
T cd05472 1 EYVVTVGLGTPARDQTVIVDTGSDLTWVQCQ-PC-----------------------------------------CLYQV 38 (299)
T ss_pred CeEEEEecCCCCcceEEEecCCCCcccccCC-CC-----------------------------------------Ceeee
Confidence 5999999999999999999999999999876 43 37889
Q ss_pred EeCCCCeEEEEEEEEEEEEeecCCCc-CCCceEEeeeEecCCCCCCCCcceEEeeCCCCCchhhhccccccccceeeeee
Q 016916 130 EYADGGSSLGVLVKDAFAFNYTNGQR-LNPRLALGCGYNQVPGASYHPLDGILGLGKGKSSIVSQLHSQKLIRNVVGHCL 208 (380)
Q Consensus 130 ~Y~~Gs~~~G~l~~D~v~l~~~~g~~-~~~~~~FG~~~~~~~~~~~~~~~GIlGLg~~~~s~~~~l~~~g~i~~~Fs~~l 208 (380)
.|++|+.++|.+++|+|+|+ +. .++++.|||++..+..+ ...+||||||+...+++.|+..+ .+++||+||
T Consensus 39 ~Yg~Gs~~~G~~~~D~v~ig----~~~~~~~~~Fg~~~~~~~~~--~~~~GilGLg~~~~s~~~ql~~~--~~~~FS~~L 110 (299)
T cd05472 39 SYGDGSYTTGDLATDTLTLG----SSDVVPGFAFGCGHDNEGLF--GGAAGLLGLGRGKLSLPSQTASS--YGGVFSYCL 110 (299)
T ss_pred EeCCCceEEEEEEEEEEEeC----CCCccCCEEEECCccCCCcc--CCCCEEEECCCCcchHHHHhhHh--hcCceEEEc
Confidence 99999778999999999996 34 67899999998764432 36899999999999999988754 478999999
Q ss_pred cC---CCceeEEECCCCCCCCCcEEeecccCCC--CCeeEEeeEEEECCEEeeeC-----CCCEEEcccccceeeCHHHH
Q 016916 209 SG---GGGGFLFFGDDLYDSSRVVWTSMSSDYT--KYYSPGVAELFFGGETTGLK-----NLPVVFDSGSSYTYLNRVTY 278 (380)
Q Consensus 209 ~~---~~~G~l~~G~~~~~~g~l~~~pl~~~~~--~~w~v~l~~i~vg~~~~~~~-----~~~aiiDSGTs~~~lp~~~~ 278 (380)
.+ ..+|+|+||++++..+++.|+|+...+. .+|.|+|++|++|++.+... ...+||||||++++||+++|
T Consensus 111 ~~~~~~~~G~l~fGg~d~~~g~l~~~pv~~~~~~~~~y~v~l~~i~vg~~~~~~~~~~~~~~~~ivDSGTt~~~lp~~~~ 190 (299)
T cd05472 111 PDRSSSSSGYLSFGAAASVPAGASFTPMLSNPRVPTFYYVGLTGISVGGRRLPIPPASFGAGGVIIDSGTVITRLPPSAY 190 (299)
T ss_pred cCCCCCCCceEEeCCccccCCCceECCCccCCCCCCeEEEeeEEEEECCEECCCCccccCCCCeEEeCCCcceecCHHHH
Confidence 75 4689999999986689999999997642 69999999999999987642 46899999999999999999
Q ss_pred HHHHHHHHHHhccCCCccCCCCCCcCcccccccCCccccccccccceEEEEEecCCCCeEEEEcCCeEEEEe-CCCeEEE
Q 016916 279 QTLTSIMKKELSAKSLKEAPEDETLPLCWKGRRPFKNVHDVKKCFRTLALSFTDGKTRTLFELTPEAYLIIS-NKGNVCL 357 (380)
Q Consensus 279 ~~l~~~i~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~P~l~f~f~g~~~~~~~~l~~~~y~~~~-~~~~~C~ 357 (380)
++|.+++.++.... ........++.|+.... .....+|+|+|+|++ +++++|++++|++.. ..+..|+
T Consensus 191 ~~l~~~l~~~~~~~--~~~~~~~~~~~C~~~~~------~~~~~~P~i~f~f~~---g~~~~l~~~~y~~~~~~~~~~C~ 259 (299)
T cd05472 191 AALRDAFRAAMAAY--PRAPGFSILDTCYDLSG------FRSVSVPTVSLHFQG---GADVELDASGVLYPVDDSSQVCL 259 (299)
T ss_pred HHHHHHHHHHhccC--CCCCCCCCCCccCcCCC------CcCCccCCEEEEECC---CCEEEeCcccEEEEecCCCCEEE
Confidence 99999998876432 11112223346986542 112469999999985 599999999999943 3457899
Q ss_pred EEEeCCcCCCCCeeEEcccc
Q 016916 358 GILNGAEVGLQDLNVIGGIG 377 (380)
Q Consensus 358 ~~~~~~~~~~~~~~IlG~~~ 377 (380)
++..... ....||||+++
T Consensus 260 ~~~~~~~--~~~~~ilG~~f 277 (299)
T cd05472 260 AFAGTSD--DGGLSIIGNVQ 277 (299)
T ss_pred EEeCCCC--CCCCEEEchHH
Confidence 8876531 13479999985
No 9
>cd05477 gastricsin Gastricsins, asparate proteases produced in gastric mucosa. Gastricsin is also called pepsinogen C. Gastricsins are produced in gastric mucosa of mammals. It is synthesized by the chief cells in the stomach as an inactive zymogen. It is self-converted to a mature enzyme under acidic conditions. Human gastricsin is distributed throughout all parts of the stomach. Gastricsin is synthesized as an inactive progastricsin that has an approximately 40 residue prosequence. It is self-converting to a mature enzyme being triggered by a drop in pH from neutrality to acidic conditions. Like other aspartic proteases, gastricsin are characterized by two catalytic aspartic residues at the active site, and display optimal activity at acidic pH. Mature enzyme has a pseudo-2-fold symmetry that passes through the active site between the catalytic aspartate residues. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic aspartate residue, with an exten
Probab=100.00 E-value=5.4e-46 Score=355.74 Aligned_cols=279 Identities=23% Similarity=0.394 Sum_probs=223.3
Q ss_pred eeEEEEEEecCCCcEEEEEEEcCCCceEEeCCCCCCCCCCCCCCCCCCCCCCCCCCCccccCcCCCCCCCCCCCCCCcee
Q 016916 49 GYYNVTMYIGQPARPYFLDLDTGSDLTWLQCDAPCVRCVEAPHPLYRPSNDLVPCEDPICASLHAPGHHNCEDPAQCDYE 128 (380)
Q Consensus 49 ~~y~~~i~vGtP~Q~~~v~~DTGSs~~wv~~~~~c~~C~~~~~~~f~p~~S~~~c~~~~c~~~~~~~~~~c~~~~~~~~~ 128 (380)
..|+++|.||||||++.|+|||||+++||+|. .|..+.+..++.|+|++|+. |+ ...|.|+
T Consensus 2 ~~y~~~i~iGtP~q~~~v~~DTGS~~~wv~~~-~C~~~~C~~~~~f~~~~SsT------~~------------~~~~~~~ 62 (318)
T cd05477 2 MSYYGEISIGTPPQNFLVLFDTGSSNLWVPSV-LCQSQACTNHTKFNPSQSST------YS------------TNGETFS 62 (318)
T ss_pred cEEEEEEEECCCCcEEEEEEeCCCccEEEccC-CCCCccccccCCCCcccCCC------ce------------ECCcEEE
Confidence 48999999999999999999999999999999 89853333578999999851 11 1467999
Q ss_pred EEeCCCCeEEEEEEEEEEEEeecCCCcCCCceEEeeeEecCCC-CCCCCcceEEeeCCC------CCchhhhccccccc-
Q 016916 129 LEYADGGSSLGVLVKDAFAFNYTNGQRLNPRLALGCGYNQVPG-ASYHPLDGILGLGKG------KSSIVSQLHSQKLI- 200 (380)
Q Consensus 129 i~Y~~Gs~~~G~l~~D~v~l~~~~g~~~~~~~~FG~~~~~~~~-~~~~~~~GIlGLg~~------~~s~~~~l~~~g~i- 200 (380)
+.|++| ++.|.+++|+|+|+ +..++++.|||++..... +.....+||||||+. ..+++++|+++|.|
T Consensus 63 ~~Yg~G-s~~G~~~~D~i~~g----~~~i~~~~Fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~~~~~~L~~~g~i~ 137 (318)
T cd05477 63 LQYGSG-SLTGIFGYDTVTVQ----GIIITNQEFGLSETEPGTNFVYAQFDGILGLAYPSISAGGATTVMQGMMQQNLLQ 137 (318)
T ss_pred EEECCc-EEEEEEEeeEEEEC----CEEEcCEEEEEEEecccccccccceeeEeecCcccccccCCCCHHHHHHhcCCcC
Confidence 999999 68999999999995 567889999999876432 333567999999985 35688999999999
Q ss_pred cceeeeeecCC---CceeEEECCCCC--CCCCcEEeecccCCCCCeeEEeeEEEECCEEeee--CCCCEEEcccccceee
Q 016916 201 RNVVGHCLSGG---GGGFLFFGDDLY--DSSRVVWTSMSSDYTKYYSPGVAELFFGGETTGL--KNLPVVFDSGSSYTYL 273 (380)
Q Consensus 201 ~~~Fs~~l~~~---~~G~l~~G~~~~--~~g~l~~~pl~~~~~~~w~v~l~~i~vg~~~~~~--~~~~aiiDSGTs~~~l 273 (380)
+++||+||.+. ..|.|+||++++ +.+++.|+|+... .+|.|.+++|+++++.+.. .+..+||||||+++++
T Consensus 138 ~~~FS~~L~~~~~~~~g~l~fGg~d~~~~~g~l~~~pv~~~--~~w~v~l~~i~v~g~~~~~~~~~~~~iiDSGtt~~~l 215 (318)
T cd05477 138 APIFSFYLSGQQGQQGGELVFGGVDNNLYTGQIYWTPVTSE--TYWQIGIQGFQINGQATGWCSQGCQAIVDTGTSLLTA 215 (318)
T ss_pred CCEEEEEEcCCCCCCCCEEEEcccCHHHcCCceEEEecCCc--eEEEEEeeEEEECCEEecccCCCceeeECCCCccEEC
Confidence 89999999853 479999999874 5789999999876 6999999999999988653 2457999999999999
Q ss_pred CHHHHHHHHHHHHHHhccCCCccCCCCCCcCcccccccCCccccccccccceEEEEEecCCCCeEEEEcCCeEEEEeCCC
Q 016916 274 NRVTYQTLTSIMKKELSAKSLKEAPEDETLPLCWKGRRPFKNVHDVKKCFRTLALSFTDGKTRTLFELTPEAYLIISNKG 353 (380)
Q Consensus 274 p~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~P~l~f~f~g~~~~~~~~l~~~~y~~~~~~~ 353 (380)
|+++|++|++.+...... ......+|+.. ..+|+|+|+|+| +++.|++++|++.. +
T Consensus 216 P~~~~~~l~~~~~~~~~~-------~~~~~~~C~~~-----------~~~p~l~~~f~g----~~~~v~~~~y~~~~--~ 271 (318)
T cd05477 216 PQQVMSTLMQSIGAQQDQ-------YGQYVVNCNNI-----------QNLPTLTFTING----VSFPLPPSAYILQN--N 271 (318)
T ss_pred CHHHHHHHHHHhCCcccc-------CCCEEEeCCcc-----------ccCCcEEEEECC----EEEEECHHHeEecC--C
Confidence 999999999888554321 12223568754 248999999986 99999999999864 4
Q ss_pred eEEE-EEEeCCcC--CCCCeeEEcccc
Q 016916 354 NVCL-GILNGAEV--GLQDLNVIGGIG 377 (380)
Q Consensus 354 ~~C~-~~~~~~~~--~~~~~~IlG~~~ 377 (380)
..|+ ++...... .....||||+.+
T Consensus 272 ~~C~~~i~~~~~~~~~~~~~~ilG~~f 298 (318)
T cd05477 272 GYCTVGIEPTYLPSQNGQPLWILGDVF 298 (318)
T ss_pred CeEEEEEEecccCCCCCCceEEEcHHH
Confidence 5786 66543211 112479999865
No 10
>cd05488 Proteinase_A_fungi Fungal Proteinase A , aspartic proteinase superfamily. Fungal Proteinase A, a proteolytic enzyme distributed among a variety of organisms, is a member of the aspartic proteinase superfamily. In Saccharomyces cerevisiae, targeted to the vacuole as a zymogen, activation of proteinases A at acidic pH can occur by two different pathways: a one-step process to release mature proteinase A, involving the intervention of proteinase B, or a step-wise pathway via the auto-activation product known as pseudo-proteinase A. Once active, S. cerevisiae proteinase A is essential to the activities of other yeast vacuolar hydrolases, including proteinase B and carboxypeptidase Y. The mature enzyme is bilobal, with each lobe providing one of the two catalytically essential aspartic acid residues in the active site. The crystal structure of free proteinase A shows that flap loop is atypically pointing directly into the S(1) pocket of the enzyme. Proteinase A preferentially hydro
Probab=100.00 E-value=7e-46 Score=355.21 Aligned_cols=281 Identities=20% Similarity=0.329 Sum_probs=222.8
Q ss_pred CCeeEEEEEEecCCCcEEEEEEEcCCCceEEeCCCCCCCCCCCCCCCCCCCCCCCCCCCccccCcCCCCCCCCCCCCCCc
Q 016916 47 PTGYYNVTMYIGQPARPYFLDLDTGSDLTWLQCDAPCVRCVEAPHPLYRPSNDLVPCEDPICASLHAPGHHNCEDPAQCD 126 (380)
Q Consensus 47 ~~~~y~~~i~vGtP~Q~~~v~~DTGSs~~wv~~~~~c~~C~~~~~~~f~p~~S~~~c~~~~c~~~~~~~~~~c~~~~~~~ 126 (380)
.+.+|+++|+||||+|++.|+|||||+++||+|. .|..+.+..++.|+|++|+. |+ .+.|.
T Consensus 7 ~~~~Y~~~i~iGtp~q~~~v~~DTGSs~~wv~~~-~C~~~~C~~~~~y~~~~Sst------~~------------~~~~~ 67 (320)
T cd05488 7 LNAQYFTDITLGTPPQKFKVILDTGSSNLWVPSV-KCGSIACFLHSKYDSSASST------YK------------ANGTE 67 (320)
T ss_pred CCCEEEEEEEECCCCcEEEEEEecCCcceEEEcC-CCCCcccCCcceECCCCCcc------ee------------eCCCE
Confidence 4668999999999999999999999999999999 89743333567999998851 11 14679
Q ss_pred eeEEeCCCCeEEEEEEEEEEEEeecCCCcCCCceEEeeeEecCCC-CCCCCcceEEeeCCCCCch------hhhcccccc
Q 016916 127 YELEYADGGSSLGVLVKDAFAFNYTNGQRLNPRLALGCGYNQVPG-ASYHPLDGILGLGKGKSSI------VSQLHSQKL 199 (380)
Q Consensus 127 ~~i~Y~~Gs~~~G~l~~D~v~l~~~~g~~~~~~~~FG~~~~~~~~-~~~~~~~GIlGLg~~~~s~------~~~l~~~g~ 199 (380)
+.+.|++| ++.|.+++|+|+|+ ...++++.|||++..... +.....+||||||+...+. ..+|+++|+
T Consensus 68 ~~~~y~~g-~~~G~~~~D~v~ig----~~~~~~~~f~~a~~~~g~~~~~~~~dGilGLg~~~~s~~~~~~~~~~l~~qg~ 142 (320)
T cd05488 68 FKIQYGSG-SLEGFVSQDTLSIG----DLTIKKQDFAEATSEPGLAFAFGKFDGILGLAYDTISVNKIVPPFYNMINQGL 142 (320)
T ss_pred EEEEECCc-eEEEEEEEeEEEEC----CEEECCEEEEEEecCCCcceeeeeeceEEecCCccccccCCCCHHHHHHhcCC
Confidence 99999999 58999999999995 467789999999876432 3345679999999987553 346788999
Q ss_pred c-cceeeeeecC--CCceeEEECCCCC--CCCCcEEeecccCCCCCeeEEeeEEEECCEEeeeCCCCEEEcccccceeeC
Q 016916 200 I-RNVVGHCLSG--GGGGFLFFGDDLY--DSSRVVWTSMSSDYTKYYSPGVAELFFGGETTGLKNLPVVFDSGSSYTYLN 274 (380)
Q Consensus 200 i-~~~Fs~~l~~--~~~G~l~~G~~~~--~~g~l~~~pl~~~~~~~w~v~l~~i~vg~~~~~~~~~~aiiDSGTs~~~lp 274 (380)
| +++||+||.+ ...|.|+||++++ +.+++.|+|+... .+|.|.+++|++|++.+...+..++|||||++++||
T Consensus 143 i~~~~FS~~L~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~~--~~w~v~l~~i~vg~~~~~~~~~~~ivDSGtt~~~lp 220 (320)
T cd05488 143 LDEPVFSFYLGSSEEDGGEATFGGIDESRFTGKITWLPVRRK--AYWEVELEKIGLGDEELELENTGAAIDTGTSLIALP 220 (320)
T ss_pred CCCCEEEEEecCCCCCCcEEEECCcCHHHcCCceEEEeCCcC--cEEEEEeCeEEECCEEeccCCCeEEEcCCcccccCC
Confidence 9 8999999985 3689999999864 5799999999875 699999999999999887777899999999999999
Q ss_pred HHHHHHHHHHHHHHhccCCCccCCCCCCcCcccccccCCccccccccccceEEEEEecCCCCeEEEEcCCeEEEEeCCCe
Q 016916 275 RVTYQTLTSIMKKELSAKSLKEAPEDETLPLCWKGRRPFKNVHDVKKCFRTLALSFTDGKTRTLFELTPEAYLIISNKGN 354 (380)
Q Consensus 275 ~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~P~l~f~f~g~~~~~~~~l~~~~y~~~~~~~~ 354 (380)
++++++|.+.+.+... . ......+|+.. ..+|.|+|+|+| ++++|+|++|+++. +.
T Consensus 221 ~~~~~~l~~~~~~~~~------~-~~~~~~~C~~~-----------~~~P~i~f~f~g----~~~~i~~~~y~~~~--~g 276 (320)
T cd05488 221 SDLAEMLNAEIGAKKS------W-NGQYTVDCSKV-----------DSLPDLTFNFDG----YNFTLGPFDYTLEV--SG 276 (320)
T ss_pred HHHHHHHHHHhCCccc------c-CCcEEeecccc-----------ccCCCEEEEECC----EEEEECHHHheecC--CC
Confidence 9999998887743211 0 11122468753 258999999986 99999999999853 34
Q ss_pred EEEEEEeCCcC--CCCCeeEEcccc
Q 016916 355 VCLGILNGAEV--GLQDLNVIGGIG 377 (380)
Q Consensus 355 ~C~~~~~~~~~--~~~~~~IlG~~~ 377 (380)
.|+..+..... ...+.||||+.+
T Consensus 277 ~C~~~~~~~~~~~~~~~~~ilG~~f 301 (320)
T cd05488 277 SCISAFTGMDFPEPVGPLAIVGDAF 301 (320)
T ss_pred eEEEEEEECcCCCCCCCeEEEchHH
Confidence 79855443211 113479999975
No 11
>cd06096 Plasmepsin_5 Plasmepsins are a class of aspartic proteinases produced by the plasmodium parasite. The family contains a group of aspartic proteinases homologous to plasmepsin 5. Plasmepsins are a class of at least 10 enzymes produced by the plasmodium parasite. Through their haemoglobin-degrading activity, they are an important cause of symptoms in malaria sufferers. This family of enzymes is a potential target for anti-malarial drugs. Plasmepsins are aspartic acid proteases, which means their active site contains two aspartic acid residues. These two aspartic acid residue act respectively as proton donor and proton acceptor, catalyzing the hydrolysis of peptide bond in proteins. Aspartic proteinases are composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalytic Asp residues are contained in an Asp-Thr-Gly-Ser/thr motif in both N- and C-terminal l
Probab=100.00 E-value=1.3e-45 Score=354.09 Aligned_cols=273 Identities=25% Similarity=0.429 Sum_probs=217.4
Q ss_pred eeEEEEEEecCCCcEEEEEEEcCCCceEEeCCCCCCCCCCCCCCCCCCCCC----CCCCCCccccCcCCCCCCCCCCCCC
Q 016916 49 GYYNVTMYIGQPARPYFLDLDTGSDLTWLQCDAPCVRCVEAPHPLYRPSND----LVPCEDPICASLHAPGHHNCEDPAQ 124 (380)
Q Consensus 49 ~~y~~~i~vGtP~Q~~~v~~DTGSs~~wv~~~~~c~~C~~~~~~~f~p~~S----~~~c~~~~c~~~~~~~~~~c~~~~~ 124 (380)
++|+++|+||||+|++.|+|||||+++||+|. .|..|..+.++.|+|++| .+.|.+..|.. ...|. ++.
T Consensus 2 ~~Y~~~i~vGtP~Q~~~v~~DTGS~~~wv~~~-~C~~c~~~~~~~y~~~~Sst~~~~~C~~~~c~~-----~~~~~-~~~ 74 (326)
T cd06096 2 AYYFIDIFIGNPPQKQSLILDTGSSSLSFPCS-QCKNCGIHMEPPYNLNNSITSSILYCDCNKCCY-----CLSCL-NNK 74 (326)
T ss_pred ceEEEEEEecCCCeEEEEEEeCCCCceEEecC-CCCCcCCCCCCCcCcccccccccccCCCccccc-----cCcCC-CCc
Confidence 58999999999999999999999999999999 999998877899999999 37899888843 23453 367
Q ss_pred CceeEEeCCCCeEEEEEEEEEEEEeecCCC---cCCCceEEeeeEecCCCCCCCCcceEEeeCCCCCc----hhhhcccc
Q 016916 125 CDYELEYADGGSSLGVLVKDAFAFNYTNGQ---RLNPRLALGCGYNQVPGASYHPLDGILGLGKGKSS----IVSQLHSQ 197 (380)
Q Consensus 125 ~~~~i~Y~~Gs~~~G~l~~D~v~l~~~~g~---~~~~~~~FG~~~~~~~~~~~~~~~GIlGLg~~~~s----~~~~l~~~ 197 (380)
|.|.+.|++|+.+.|.+++|+|+|+..... ....++.|||+......+.....+||||||+...+ ...+|.++
T Consensus 75 ~~~~i~Y~~gs~~~G~~~~D~v~lg~~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~~GilGLg~~~~~~~~~~~~~l~~~ 154 (326)
T cd06096 75 CEYSISYSEGSSISGFYFSDFVSFESYLNSNSEKESFKKIFGCHTHETNLFLTQQATGILGLSLTKNNGLPTPIILLFTK 154 (326)
T ss_pred CcEEEEECCCCceeeEEEEEEEEeccCCCCccccccccEEeccCccccCcccccccceEEEccCCcccccCchhHHHHHh
Confidence 999999999988999999999999742110 01235789999887554445678999999998643 22234455
Q ss_pred ccc-c--ceeeeeecCCCceeEEECCCCC--CC----------CCcEEeecccCCCCCeeEEeeEEEECCEE---eeeCC
Q 016916 198 KLI-R--NVVGHCLSGGGGGFLFFGDDLY--DS----------SRVVWTSMSSDYTKYYSPGVAELFFGGET---TGLKN 259 (380)
Q Consensus 198 g~i-~--~~Fs~~l~~~~~G~l~~G~~~~--~~----------g~l~~~pl~~~~~~~w~v~l~~i~vg~~~---~~~~~ 259 (380)
+.+ + ++||+||.+. .|.|+||++++ .. +++.|+|+... .+|.|.+++|+++++. .....
T Consensus 155 ~~~~~~~~~FS~~l~~~-~G~l~~Gg~d~~~~~~~~~~~~~~~~~~~~~p~~~~--~~y~v~l~~i~vg~~~~~~~~~~~ 231 (326)
T cd06096 155 RPKLKKDKIFSICLSED-GGELTIGGYDKDYTVRNSSIGNNKVSKIVWTPITRK--YYYYVKLEGLSVYGTTSNSGNTKG 231 (326)
T ss_pred cccccCCceEEEEEcCC-CeEEEECccChhhhcccccccccccCCceEEeccCC--ceEEEEEEEEEEcccccceecccC
Confidence 544 3 8999999864 79999999874 23 78999999876 6999999999999885 22346
Q ss_pred CCEEEcccccceeeCHHHHHHHHHHHHHHhccCCCccCCCCCCcCcccccccCCccccccccccceEEEEEecCCCCeEE
Q 016916 260 LPVVFDSGSSYTYLNRVTYQTLTSIMKKELSAKSLKEAPEDETLPLCWKGRRPFKNVHDVKKCFRTLALSFTDGKTRTLF 339 (380)
Q Consensus 260 ~~aiiDSGTs~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~P~l~f~f~g~~~~~~~ 339 (380)
..+||||||++++||+++|++|.+++ |+|+|+|++ ++++
T Consensus 232 ~~aivDSGTs~~~lp~~~~~~l~~~~--------------------------------------P~i~~~f~~---g~~~ 270 (326)
T cd06096 232 LGMLVDSGSTLSHFPEDLYNKINNFF--------------------------------------PTITIIFEN---NLKI 270 (326)
T ss_pred CCEEEeCCCCcccCCHHHHHHHHhhc--------------------------------------CcEEEEEcC---CcEE
Confidence 78999999999999999998766443 679999995 5999
Q ss_pred EEcCCeEEEEeCCCeEEEEEEeCCcCCCCCeeEEcccc
Q 016916 340 ELTPEAYLIISNKGNVCLGILNGAEVGLQDLNVIGGIG 377 (380)
Q Consensus 340 ~l~~~~y~~~~~~~~~C~~~~~~~~~~~~~~~IlG~~~ 377 (380)
+++|++|++...+..+|+++... .+.+|||+++
T Consensus 271 ~i~p~~y~~~~~~~~c~~~~~~~-----~~~~ILG~~f 303 (326)
T cd06096 271 DWKPSSYLYKKESFWCKGGEKSV-----SNKPILGASF 303 (326)
T ss_pred EECHHHhccccCCceEEEEEecC-----CCceEEChHH
Confidence 99999999976555556565432 2479999975
No 12
>cd05489 xylanase_inhibitor_I_like TAXI-I inhibits degradation of xylan in the cell wall. Xylanase inhibitor-I (TAXI-I) is a member of potent TAXI-type inhibitors of fungal and bacterial family 11 xylanases. Plants developed a diverse battery of defense mechanisms in response to continual challenges by a broad spectrum of pathogenic microorganisms. Their defense arsenal includes inhibitors of cell wall-degrading enzymes, which hinder a possible invasion and colonization by antagonists. Xylanases of fungal and bacterial pathogens are the key enzymes in the degradation of xylan in the cell wall. Plants secrete proteins that inhibit these degradation glycosidases, including xylanase. Surprisingly, TAXI-I displays structural homology with the pepsin-like family of aspartic proteases but is proteolytically nonfunctional, because one or more residues of the essential catalytic triad are absent. The structure of the TAXI-inhibitor, Aspergillus niger xylanase I complex, illustrates the ability
Probab=100.00 E-value=1e-44 Score=351.30 Aligned_cols=304 Identities=22% Similarity=0.340 Sum_probs=231.7
Q ss_pred ecCCCcE-EEEEEEcCCCceEEeCCCCCCCCCCCCCCCCCCCCCCCCCCCccccCcCCCCC---------CCCCCCCCCc
Q 016916 57 IGQPARP-YFLDLDTGSDLTWLQCDAPCVRCVEAPHPLYRPSNDLVPCEDPICASLHAPGH---------HNCEDPAQCD 126 (380)
Q Consensus 57 vGtP~Q~-~~v~~DTGSs~~wv~~~~~c~~C~~~~~~~f~p~~S~~~c~~~~c~~~~~~~~---------~~c~~~~~~~ 126 (380)
.|||-.+ +.|++||||+++||+|. +|. ...|. .++|+++.|+..+++.. ..|.. +.|.
T Consensus 2 ~~~~~~~~~~~~~DTGS~l~WvqC~-~~~------sst~~----~~~C~s~~C~~~~~~~~~~~~~~~~~~~c~~-~~C~ 69 (362)
T cd05489 2 TITPLKGAVPLVLDLAGPLLWSTCD-AGH------SSTYQ----TVPCSSSVCSLANRYHCPGTCGGAPGPGCGN-NTCT 69 (362)
T ss_pred cccCccCCeeEEEECCCCceeeeCC-CCC------cCCCC----ccCcCChhhccccccCCCccccCCCCCCCCC-CcCe
Confidence 5788777 99999999999999988 542 22343 38999999987765422 24533 4688
Q ss_pred eeEE-eCCCCeEEEEEEEEEEEEeecCCC----cCCCceEEeeeEecCCCCCCCCcceEEeeCCCCCchhhhcccccccc
Q 016916 127 YELE-YADGGSSLGVLVKDAFAFNYTNGQ----RLNPRLALGCGYNQVPGASYHPLDGILGLGKGKSSIVSQLHSQKLIR 201 (380)
Q Consensus 127 ~~i~-Y~~Gs~~~G~l~~D~v~l~~~~g~----~~~~~~~FG~~~~~~~~~~~~~~~GIlGLg~~~~s~~~~l~~~g~i~ 201 (380)
|... |++|+...|.+++|+|+|+..++. ..++++.|||+............+||||||++++|++.||..++..+
T Consensus 70 y~~~~y~~gs~t~G~l~~Dtl~~~~~~g~~~~~~~~~~~~FGC~~~~~~~~~~~~~dGIlGLg~~~lSl~sql~~~~~~~ 149 (362)
T cd05489 70 AHPYNPVTGECATGDLTQDVLSANTTDGSNPLLVVIFNFVFSCAPSLLLKGLPPGAQGVAGLGRSPLSLPAQLASAFGVA 149 (362)
T ss_pred eEccccccCcEeeEEEEEEEEEecccCCCCcccceeCCEEEEcCCcccccCCccccccccccCCCccchHHHhhhhcCCC
Confidence 8665 788989999999999999865443 26789999999875321113458999999999999999998765568
Q ss_pred ceeeeeecC--CCceeEEECCCCC--C------CCCcEEeecccCC--CCCeeEEeeEEEECCEEeeeC----------C
Q 016916 202 NVVGHCLSG--GGGGFLFFGDDLY--D------SSRVVWTSMSSDY--TKYYSPGVAELFFGGETTGLK----------N 259 (380)
Q Consensus 202 ~~Fs~~l~~--~~~G~l~~G~~~~--~------~g~l~~~pl~~~~--~~~w~v~l~~i~vg~~~~~~~----------~ 259 (380)
++||+||.+ ..+|.|+||+.++ . .+++.|+||+.++ ..+|.|+|++|+||++.+.++ .
T Consensus 150 ~~FS~CL~~~~~~~g~l~fG~~~~~~~~~~~~~~~~~~~tPl~~~~~~~~~Y~v~l~~IsVg~~~l~~~~~~~~~~~~~~ 229 (362)
T cd05489 150 RKFALCLPSSPGGPGVAIFGGGPYYLFPPPIDLSKSLSYTPLLTNPRKSGEYYIGVTSIAVNGHAVPLNPTLSANDRLGP 229 (362)
T ss_pred cceEEEeCCCCCCCeeEEECCCchhcccccccccCCccccccccCCCCCCceEEEEEEEEECCEECCCCchhccccccCC
Confidence 999999975 3589999998763 1 3789999999863 279999999999999987642 3
Q ss_pred CCEEEcccccceeeCHHHHHHHHHHHHHHhccCCCccCCCCCCcCcccccccCCccccccccccceEEEEEecCCCCeEE
Q 016916 260 LPVVFDSGSSYTYLNRVTYQTLTSIMKKELSAKSLKEAPEDETLPLCWKGRRPFKNVHDVKKCFRTLALSFTDGKTRTLF 339 (380)
Q Consensus 260 ~~aiiDSGTs~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~P~l~f~f~g~~~~~~~ 339 (380)
+.+||||||++++||+++|++|.++|.+++...+.... .....+.||+.... ...+....+|.|+|+|+|+ +++|
T Consensus 230 ~g~iiDSGTs~t~lp~~~y~~l~~a~~~~~~~~~~~~~-~~~~~~~C~~~~~~--~~~~~~~~~P~it~~f~g~--g~~~ 304 (362)
T cd05489 230 GGVKLSTVVPYTVLRSDIYRAFTQAFAKATARIPRVPA-AAVFPELCYPASAL--GNTRLGYAVPAIDLVLDGG--GVNW 304 (362)
T ss_pred CcEEEecCCceEEECHHHHHHHHHHHHHHhcccCcCCC-CCCCcCccccCCCc--CCcccccccceEEEEEeCC--CeEE
Confidence 57999999999999999999999999988764322111 11123689975421 0111235799999999841 4999
Q ss_pred EEcCCeEEEEeCCCeEEEEEEeCCcCCCCCeeEEccccc
Q 016916 340 ELTPEAYLIISNKGNVCLGILNGAEVGLQDLNVIGGIGD 378 (380)
Q Consensus 340 ~l~~~~y~~~~~~~~~C~~~~~~~~~~~~~~~IlG~~~~ 378 (380)
+|+|++|+++..++..|+++...+... ...||||++|+
T Consensus 305 ~l~~~ny~~~~~~~~~Cl~f~~~~~~~-~~~~IlG~~~~ 342 (362)
T cd05489 305 TIFGANSMVQVKGGVACLAFVDGGSEP-RPAVVIGGHQM 342 (362)
T ss_pred EEcCCceEEEcCCCcEEEEEeeCCCCC-CceEEEeehee
Confidence 999999999877777899998765321 35899999986
No 13
>cd05485 Cathepsin_D_like Cathepsin_D_like, pepsin family of proteinases. Cathepsin D is the major aspartic proteinase of the lysosomal compartment where it functions in protein catabolism. It is a member of the pepsin family of proteinases. This enzyme is distinguished from other members of the pepsin family by two features that are characteristic of lysosomal hydrolases. First, mature Cathepsin D is found predominantly in a two-chain form due to a posttranslational cleavage event. Second, it contains phosphorylated, N-linked oligosaccharides that target the enzyme to lysosomes via mannose-6-phosphate receptors. Cathepsin D preferentially attacks peptide bonds flanked by bulky hydrophobic amino acids and its pH optimum is between pH 2.8 and 4.0. Two active site aspartic acid residues are essential for the catalytic activity of aspartic proteinases. Like other aspartic proteinases, Cathepsin D is a bilobed molecule; the two evolutionary related lobes are mostly made up of beta-sheets an
Probab=100.00 E-value=4.6e-45 Score=350.71 Aligned_cols=282 Identities=19% Similarity=0.312 Sum_probs=224.4
Q ss_pred CCCeeEEEEEEecCCCcEEEEEEEcCCCceEEeCCCCCC----CCCCCCCCCCCCCCCCCCCCCccccCcCCCCCCCCCC
Q 016916 46 YPTGYYNVTMYIGQPARPYFLDLDTGSDLTWLQCDAPCV----RCVEAPHPLYRPSNDLVPCEDPICASLHAPGHHNCED 121 (380)
Q Consensus 46 ~~~~~y~~~i~vGtP~Q~~~v~~DTGSs~~wv~~~~~c~----~C~~~~~~~f~p~~S~~~c~~~~c~~~~~~~~~~c~~ 121 (380)
+.+.+|+++|+||||+|++.|++||||+++||+|. .|. .|. .++.|+|++|+ +|+.
T Consensus 7 ~~~~~Y~~~i~vGtP~q~~~v~~DTGSs~~Wv~~~-~C~~~~~~c~--~~~~y~~~~Ss------t~~~----------- 66 (329)
T cd05485 7 YMDAQYYGVITIGTPPQSFKVVFDTGSSNLWVPSK-KCSWTNIACL--LHNKYDSTKSS------TYKK----------- 66 (329)
T ss_pred ccCCeEEEEEEECCCCcEEEEEEcCCCccEEEecC-CCCCCCcccc--CCCeECCcCCC------CeEE-----------
Confidence 35679999999999999999999999999999998 897 454 46789999885 1221
Q ss_pred CCCCceeEEeCCCCeEEEEEEEEEEEEeecCCCcCCCceEEeeeEecCCC-CCCCCcceEEeeCCCCCc------hhhhc
Q 016916 122 PAQCDYELEYADGGSSLGVLVKDAFAFNYTNGQRLNPRLALGCGYNQVPG-ASYHPLDGILGLGKGKSS------IVSQL 194 (380)
Q Consensus 122 ~~~~~~~i~Y~~Gs~~~G~l~~D~v~l~~~~g~~~~~~~~FG~~~~~~~~-~~~~~~~GIlGLg~~~~s------~~~~l 194 (380)
..|.|.+.|++| ++.|.+++|+|+|+ +..++++.|||+...... +.....+||||||+...+ ++.+|
T Consensus 67 -~~~~~~i~Y~~g-~~~G~~~~D~v~ig----~~~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~p~~~~l 140 (329)
T cd05485 67 -NGTEFAIQYGSG-SLSGFLSTDTVSVG----GVSVKGQTFAEAINEPGLTFVAAKFDGILGMGYSSISVDGVVPVFYNM 140 (329)
T ss_pred -CCeEEEEEECCc-eEEEEEecCcEEEC----CEEECCEEEEEEEecCCccccccccceEEEcCCccccccCCCCHHHHH
Confidence 357999999999 58999999999995 466789999999776432 334568999999998654 45789
Q ss_pred cccccc-cceeeeeecCC----CceeEEECCCCC--CCCCcEEeecccCCCCCeeEEeeEEEECCEEeeeCCCCEEEccc
Q 016916 195 HSQKLI-RNVVGHCLSGG----GGGFLFFGDDLY--DSSRVVWTSMSSDYTKYYSPGVAELFFGGETTGLKNLPVVFDSG 267 (380)
Q Consensus 195 ~~~g~i-~~~Fs~~l~~~----~~G~l~~G~~~~--~~g~l~~~pl~~~~~~~w~v~l~~i~vg~~~~~~~~~~aiiDSG 267 (380)
++||+| +++||+||.+. ..|+|+||+++. +.|+++|+|+... .+|.|.+++++++++.+...+..+|||||
T Consensus 141 ~~qg~i~~~~FS~~l~~~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~~--~~~~v~~~~i~v~~~~~~~~~~~~iiDSG 218 (329)
T cd05485 141 VNQKLVDAPVFSFYLNRDPSAKEGGELILGGSDPKHYTGNFTYLPVTRK--GYWQFKMDSVSVGEGEFCSGGCQAIADTG 218 (329)
T ss_pred HhCCCCCCCEEEEEecCCCCCCCCcEEEEcccCHHHcccceEEEEcCCc--eEEEEEeeEEEECCeeecCCCcEEEEccC
Confidence 999999 89999999742 469999999874 5789999999865 79999999999999987655678999999
Q ss_pred ccceeeCHHHHHHHHHHHHHHhccCCCccCCCCCCcCcccccccCCccccccccccceEEEEEecCCCCeEEEEcCCeEE
Q 016916 268 SSYTYLNRVTYQTLTSIMKKELSAKSLKEAPEDETLPLCWKGRRPFKNVHDVKKCFRTLALSFTDGKTRTLFELTPEAYL 347 (380)
Q Consensus 268 Ts~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~P~l~f~f~g~~~~~~~~l~~~~y~ 347 (380)
|+++++|++++++|.+++.... . . ......+|+.. ..+|+|+|+|+| ++++|+|++|+
T Consensus 219 tt~~~lP~~~~~~l~~~~~~~~----~--~-~~~~~~~C~~~-----------~~~p~i~f~fgg----~~~~i~~~~yi 276 (329)
T cd05485 219 TSLIAGPVDEIEKLNNAIGAKP----I--I-GGEYMVNCSAI-----------PSLPDITFVLGG----KSFSLTGKDYV 276 (329)
T ss_pred CcceeCCHHHHHHHHHHhCCcc----c--c-CCcEEEecccc-----------ccCCcEEEEECC----EEeEEChHHeE
Confidence 9999999999999988875421 1 1 11233578753 247999999986 99999999999
Q ss_pred EEeCC--CeEEE-EEEeCCc-CCCCCeeEEcccc
Q 016916 348 IISNK--GNVCL-GILNGAE-VGLQDLNVIGGIG 377 (380)
Q Consensus 348 ~~~~~--~~~C~-~~~~~~~-~~~~~~~IlG~~~ 377 (380)
++..+ ...|+ +++.... ...++.||||+.+
T Consensus 277 ~~~~~~~~~~C~~~~~~~~~~~~~~~~~IlG~~f 310 (329)
T cd05485 277 LKVTQMGQTICLSGFMGIDIPPPAGPLWILGDVF 310 (329)
T ss_pred EEecCCCCCEEeeeEEECcCCCCCCCeEEEchHH
Confidence 97643 35798 4554321 1123579999964
No 14
>cd05487 renin_like Renin stimulates production of angiotensin and thus affects blood pressure. Renin, also known as angiotensinogenase, is a circulating enzyme that participates in the renin-angiotensin system that mediates extracellular volume, arterial vasoconstriction, and consequently mean arterial blood pressure. The enzyme is secreted by the kidneys from specialized juxtaglomerular cells in response to decreases in glomerular filtration rate (a consequence of low blood volume), diminished filtered sodium chloride and sympathetic nervous system innervation. The enzyme circulates in the blood stream and hydrolyzes angiotensinogen secreted from the liver into the peptide angiotensin I. Angiotensin I is further cleaved in the lungs by endothelial bound angiotensin converting enzyme (ACE) into angiotensin II, the final active peptide. Renin is a member of the aspartic protease family. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate r
Probab=100.00 E-value=5.6e-45 Score=349.86 Aligned_cols=282 Identities=18% Similarity=0.274 Sum_probs=221.8
Q ss_pred CCCeeEEEEEEecCCCcEEEEEEEcCCCceEEeCCCCCCCC--CCCCCCCCCCCCCCCCCCCccccCcCCCCCCCCCCCC
Q 016916 46 YPTGYYNVTMYIGQPARPYFLDLDTGSDLTWLQCDAPCVRC--VEAPHPLYRPSNDLVPCEDPICASLHAPGHHNCEDPA 123 (380)
Q Consensus 46 ~~~~~y~~~i~vGtP~Q~~~v~~DTGSs~~wv~~~~~c~~C--~~~~~~~f~p~~S~~~c~~~~c~~~~~~~~~~c~~~~ 123 (380)
+.+.+|+++|+||||+|+++|+|||||+++||+|. .|..| .+..++.|+|++|+ +|+. .
T Consensus 4 ~~~~~y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~-~C~~~~~~c~~~~~y~~~~Ss------T~~~------------~ 64 (326)
T cd05487 4 YLDTQYYGEIGIGTPPQTFKVVFDTGSSNLWVPSS-KCSPLYTACVTHNLYDASDSS------TYKE------------N 64 (326)
T ss_pred cCCCeEEEEEEECCCCcEEEEEEeCCccceEEccC-CCcCcchhhcccCcCCCCCCe------eeeE------------C
Confidence 35679999999999999999999999999999988 78742 22357899999985 2222 3
Q ss_pred CCceeEEeCCCCeEEEEEEEEEEEEeecCCCcCCCceEEeeeEecCC-CCCCCCcceEEeeCCCCC------chhhhccc
Q 016916 124 QCDYELEYADGGSSLGVLVKDAFAFNYTNGQRLNPRLALGCGYNQVP-GASYHPLDGILGLGKGKS------SIVSQLHS 196 (380)
Q Consensus 124 ~~~~~i~Y~~Gs~~~G~l~~D~v~l~~~~g~~~~~~~~FG~~~~~~~-~~~~~~~~GIlGLg~~~~------s~~~~l~~ 196 (380)
.|.|++.|++| .+.|.+++|+|+|+ ...+ ++.||+++.... .+.....+||||||++.. +++.+|++
T Consensus 65 ~~~~~~~Yg~g-~~~G~~~~D~v~~g----~~~~-~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~L~~ 138 (326)
T cd05487 65 GTEFTIHYASG-TVKGFLSQDIVTVG----GIPV-TQMFGEVTALPAIPFMLAKFDGVLGMGYPKQAIGGVTPVFDNIMS 138 (326)
T ss_pred CEEEEEEeCCc-eEEEEEeeeEEEEC----CEEe-eEEEEEEEeccCCccceeecceEEecCChhhcccCCCCHHHHHHh
Confidence 67999999999 69999999999996 3334 478999987532 233456899999998754 45678999
Q ss_pred cccc-cceeeeeecC----CCceeEEECCCCC--CCCCcEEeecccCCCCCeeEEeeEEEECCEEeeeC-CCCEEEcccc
Q 016916 197 QKLI-RNVVGHCLSG----GGGGFLFFGDDLY--DSSRVVWTSMSSDYTKYYSPGVAELFFGGETTGLK-NLPVVFDSGS 268 (380)
Q Consensus 197 ~g~i-~~~Fs~~l~~----~~~G~l~~G~~~~--~~g~l~~~pl~~~~~~~w~v~l~~i~vg~~~~~~~-~~~aiiDSGT 268 (380)
||.| +++||+||.+ ...|+|+||+++. +.|+++|+|+... .+|+|.+++++++++.+... ...+||||||
T Consensus 139 qg~i~~~~FS~~L~~~~~~~~~G~l~fGg~d~~~y~g~l~~~~~~~~--~~w~v~l~~i~vg~~~~~~~~~~~aiiDSGt 216 (326)
T cd05487 139 QGVLKEDVFSVYYSRDSSHSLGGEIVLGGSDPQHYQGDFHYINTSKT--GFWQIQMKGVSVGSSTLLCEDGCTAVVDTGA 216 (326)
T ss_pred cCCCCCCEEEEEEeCCCCCCCCcEEEECCcChhhccCceEEEECCcC--ceEEEEecEEEECCEEEecCCCCEEEECCCc
Confidence 9999 8999999974 2479999999874 5799999999765 69999999999999987643 3579999999
Q ss_pred cceeeCHHHHHHHHHHHHHHhccCCCccCCCCCCcCcccccccCCccccccccccceEEEEEecCCCCeEEEEcCCeEEE
Q 016916 269 SYTYLNRVTYQTLTSIMKKELSAKSLKEAPEDETLPLCWKGRRPFKNVHDVKKCFRTLALSFTDGKTRTLFELTPEAYLI 348 (380)
Q Consensus 269 s~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~P~l~f~f~g~~~~~~~~l~~~~y~~ 348 (380)
+++++|++++++|++++.+... ......+|+.. ..+|+|+|+|+| ..++|++++|++
T Consensus 217 s~~~lP~~~~~~l~~~~~~~~~--------~~~y~~~C~~~-----------~~~P~i~f~fgg----~~~~v~~~~yi~ 273 (326)
T cd05487 217 SFISGPTSSISKLMEALGAKER--------LGDYVVKCNEV-----------PTLPDISFHLGG----KEYTLSSSDYVL 273 (326)
T ss_pred cchhCcHHHHHHHHHHhCCccc--------CCCEEEecccc-----------CCCCCEEEEECC----EEEEeCHHHhEE
Confidence 9999999999999988853311 12233578764 248999999975 999999999999
Q ss_pred EeCC--CeEEE-EEEeCCcC-CCCCeeEEcccc
Q 016916 349 ISNK--GNVCL-GILNGAEV-GLQDLNVIGGIG 377 (380)
Q Consensus 349 ~~~~--~~~C~-~~~~~~~~-~~~~~~IlG~~~ 377 (380)
+..+ +..|+ ++...... ..++.||||+.+
T Consensus 274 ~~~~~~~~~C~~~~~~~~~~~~~~~~~ilG~~f 306 (326)
T cd05487 274 QDSDFSDKLCTVAFHAMDIPPPTGPLWVLGATF 306 (326)
T ss_pred eccCCCCCEEEEEEEeCCCCCCCCCeEEEehHH
Confidence 7643 46797 55543211 123589999865
No 15
>cd06098 phytepsin Phytepsin, a plant homolog of mammalian lysosomal pepsins. Phytepsin, a plant homolog of mammalian lysosomal pepsins, resides in grains, roots, stems, leaves and flowers. Phytepsin may participate in metabolic turnover and in protein processing events. In addition, it highly expressed in several plant tissues undergoing apoptosis. Phytepsin contains an internal region consisting of about 100 residues not present in animal or microbial pepsins. This region is thus called a plant specific insert. The insert is highly similar to saponins, which are lysosomal sphingolipid-activating proteins in mammalian cells. The saponin-like domain may have a role in the vacuolar targeting of phytepsin. Phytepsin, as its animal counterparts, possesses a topology typical of all aspartic proteases. They are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe has probably evolved fro
Probab=100.00 E-value=1.1e-44 Score=346.47 Aligned_cols=270 Identities=21% Similarity=0.337 Sum_probs=215.5
Q ss_pred CCCeeEEEEEEecCCCcEEEEEEEcCCCceEEeCCCCCC---CCCCCCCCCCCCCCCCCCCCCccccCcCCCCCCCCCCC
Q 016916 46 YPTGYYNVTMYIGQPARPYFLDLDTGSDLTWLQCDAPCV---RCVEAPHPLYRPSNDLVPCEDPICASLHAPGHHNCEDP 122 (380)
Q Consensus 46 ~~~~~y~~~i~vGtP~Q~~~v~~DTGSs~~wv~~~~~c~---~C~~~~~~~f~p~~S~~~c~~~~c~~~~~~~~~~c~~~ 122 (380)
+.+.+|+++|+||||||++.|+|||||+++||+|. .|. .|. .++.|+|++|+. |+.
T Consensus 6 ~~~~~Y~~~i~iGtP~Q~~~v~~DTGSs~lWv~~~-~C~~~~~C~--~~~~y~~~~SsT------~~~------------ 64 (317)
T cd06098 6 YLDAQYFGEIGIGTPPQKFTVIFDTGSSNLWVPSS-KCYFSIACY--FHSKYKSSKSST------YKK------------ 64 (317)
T ss_pred cCCCEEEEEEEECCCCeEEEEEECCCccceEEecC-CCCCCcccc--ccCcCCcccCCC------ccc------------
Confidence 35679999999999999999999999999999999 896 676 468899999851 221
Q ss_pred CCCceeEEeCCCCeEEEEEEEEEEEEeecCCCcCCCceEEeeeEecCCC-CCCCCcceEEeeCCCCCc------hhhhcc
Q 016916 123 AQCDYELEYADGGSSLGVLVKDAFAFNYTNGQRLNPRLALGCGYNQVPG-ASYHPLDGILGLGKGKSS------IVSQLH 195 (380)
Q Consensus 123 ~~~~~~i~Y~~Gs~~~G~l~~D~v~l~~~~g~~~~~~~~FG~~~~~~~~-~~~~~~~GIlGLg~~~~s------~~~~l~ 195 (380)
....+++.|++| .+.|.+++|+|+|+ ...++++.||+++..... +.....+||||||+...+ ++.+|+
T Consensus 65 ~~~~~~i~Yg~G-~~~G~~~~D~v~ig----~~~v~~~~f~~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~l~ 139 (317)
T cd06098 65 NGTSASIQYGTG-SISGFFSQDSVTVG----DLVVKNQVFIEATKEPGLTFLLAKFDGILGLGFQEISVGKAVPVWYNMV 139 (317)
T ss_pred CCCEEEEEcCCc-eEEEEEEeeEEEEC----CEEECCEEEEEEEecCCccccccccceeccccccchhhcCCCCHHHHHH
Confidence 245889999999 68999999999995 467889999999876432 444568999999997543 456889
Q ss_pred ccccc-cceeeeeecCC----CceeEEECCCCC--CCCCcEEeecccCCCCCeeEEeeEEEECCEEeee--CCCCEEEcc
Q 016916 196 SQKLI-RNVVGHCLSGG----GGGFLFFGDDLY--DSSRVVWTSMSSDYTKYYSPGVAELFFGGETTGL--KNLPVVFDS 266 (380)
Q Consensus 196 ~~g~i-~~~Fs~~l~~~----~~G~l~~G~~~~--~~g~l~~~pl~~~~~~~w~v~l~~i~vg~~~~~~--~~~~aiiDS 266 (380)
++|+| +++||+||.+. ..|+|+||++++ +.|++.|+|+... .+|.|.+++|+++++.+.. ....+||||
T Consensus 140 ~qg~i~~~~FS~~L~~~~~~~~~G~l~fGg~d~~~~~g~l~~~pv~~~--~~w~v~l~~i~v~g~~~~~~~~~~~aivDT 217 (317)
T cd06098 140 EQGLVKEPVFSFWLNRNPDEEEGGELVFGGVDPKHFKGEHTYVPVTRK--GYWQFEMGDVLIGGKSTGFCAGGCAAIADS 217 (317)
T ss_pred hcCCCCCCEEEEEEecCCCCCCCcEEEECccChhhcccceEEEecCcC--cEEEEEeCeEEECCEEeeecCCCcEEEEec
Confidence 99999 89999999742 479999999864 5799999999865 6999999999999987654 246799999
Q ss_pred cccceeeCHHHHHHHHHHHHHHhccCCCccCCCCCCcCcccccccCCccccccccccceEEEEEecCCCCeEEEEcCCeE
Q 016916 267 GSSYTYLNRVTYQTLTSIMKKELSAKSLKEAPEDETLPLCWKGRRPFKNVHDVKKCFRTLALSFTDGKTRTLFELTPEAY 346 (380)
Q Consensus 267 GTs~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~P~l~f~f~g~~~~~~~~l~~~~y 346 (380)
||+++++|++++++|. ...+|+... .+|+|+|+|+| +.++|+|++|
T Consensus 218 GTs~~~lP~~~~~~i~-------------------~~~~C~~~~-----------~~P~i~f~f~g----~~~~l~~~~y 263 (317)
T cd06098 218 GTSLLAGPTTIVTQIN-------------------SAVDCNSLS-----------SMPNVSFTIGG----KTFELTPEQY 263 (317)
T ss_pred CCcceeCCHHHHHhhh-------------------ccCCccccc-----------cCCcEEEEECC----EEEEEChHHe
Confidence 9999999998776543 113587542 48999999986 9999999999
Q ss_pred EEEeCC--CeEEEE-EEeCCcC-CCCCeeEEcccc
Q 016916 347 LIISNK--GNVCLG-ILNGAEV-GLQDLNVIGGIG 377 (380)
Q Consensus 347 ~~~~~~--~~~C~~-~~~~~~~-~~~~~~IlG~~~ 377 (380)
+++..+ ...|++ +...... ..+..||||+++
T Consensus 264 i~~~~~~~~~~C~~~~~~~~~~~~~~~~~IlGd~F 298 (317)
T cd06098 264 ILKVGEGAAAQCISGFTALDVPPPRGPLWILGDVF 298 (317)
T ss_pred EEeecCCCCCEEeceEEECCCCCCCCCeEEechHH
Confidence 987643 358984 5433211 123479999975
No 16
>PTZ00147 plasmepsin-1; Provisional
Probab=100.00 E-value=4.2e-44 Score=354.05 Aligned_cols=285 Identities=19% Similarity=0.237 Sum_probs=220.2
Q ss_pred EEEEEecCCCCCeeEEEEEEecCCCcEEEEEEEcCCCceEEeCCCCCCCCCCCCCCCCCCCCCCCCCCCccccCcCCCCC
Q 016916 37 LLFQVHGNVYPTGYYNVTMYIGQPARPYFLDLDTGSDLTWLQCDAPCVRCVEAPHPLYRPSNDLVPCEDPICASLHAPGH 116 (380)
Q Consensus 37 ~~lpl~~~~~~~~~y~~~i~vGtP~Q~~~v~~DTGSs~~wv~~~~~c~~C~~~~~~~f~p~~S~~~c~~~~c~~~~~~~~ 116 (380)
..+||.. +.+.+|+++|+||||||++.|+|||||+++||+|. .|..|.++.++.|+|++|+ +|+.
T Consensus 128 ~~v~L~n--~~n~~Y~~~I~IGTP~Q~f~Vi~DTGSsdlWVps~-~C~~~~C~~~~~yd~s~Ss------T~~~------ 192 (453)
T PTZ00147 128 DNVELKD--LANVMSYGEAKLGDNGQKFNFIFDTGSANLWVPSI-KCTTEGCETKNLYDSSKSK------TYEK------ 192 (453)
T ss_pred Ceeeccc--cCCCEEEEEEEECCCCeEEEEEEeCCCCcEEEeec-CCCcccccCCCccCCccCc------ceEE------
Confidence 4556642 24569999999999999999999999999999999 8986555568899999985 2222
Q ss_pred CCCCCCCCCceeEEeCCCCeEEEEEEEEEEEEeecCCCcCCCceEEeeeEecCCC---CCCCCcceEEeeCCCCCc----
Q 016916 117 HNCEDPAQCDYELEYADGGSSLGVLVKDAFAFNYTNGQRLNPRLALGCGYNQVPG---ASYHPLDGILGLGKGKSS---- 189 (380)
Q Consensus 117 ~~c~~~~~~~~~i~Y~~Gs~~~G~l~~D~v~l~~~~g~~~~~~~~FG~~~~~~~~---~~~~~~~GIlGLg~~~~s---- 189 (380)
..+.|++.|++| .+.|.+++|+|+|+ ...++ ..|+++...... +.....|||||||++..+
T Consensus 193 ------~~~~f~i~Yg~G-svsG~~~~DtVtiG----~~~v~-~qF~~~~~~~~f~~~~~~~~~DGILGLG~~~~S~~~~ 260 (453)
T PTZ00147 193 ------DGTKVEMNYVSG-TVSGFFSKDLVTIG----NLSVP-YKFIEVTDTNGFEPFYTESDFDGIFGLGWKDLSIGSV 260 (453)
T ss_pred ------CCCEEEEEeCCC-CEEEEEEEEEEEEC----CEEEE-EEEEEEEeccCcccccccccccceecccCCccccccC
Confidence 356899999999 68999999999995 44555 578888765321 233468999999998654
Q ss_pred --hhhhccccccc-cceeeeeecC--CCceeEEECCCCC--CCCCcEEeecccCCCCCeeEEeeEEEECCEEeeeCCCCE
Q 016916 190 --IVSQLHSQKLI-RNVVGHCLSG--GGGGFLFFGDDLY--DSSRVVWTSMSSDYTKYYSPGVAELFFGGETTGLKNLPV 262 (380)
Q Consensus 190 --~~~~l~~~g~i-~~~Fs~~l~~--~~~G~l~~G~~~~--~~g~l~~~pl~~~~~~~w~v~l~~i~vg~~~~~~~~~~a 262 (380)
++.+|++|++| +++||+||.+ ...|.|+|||++. +.|++.|+|+... .+|+|.++ +.+++.. .....+
T Consensus 261 ~p~~~~L~~qg~I~~~vFS~~L~~~~~~~G~L~fGGiD~~ky~G~l~y~pl~~~--~~W~V~l~-~~vg~~~--~~~~~a 335 (453)
T PTZ00147 261 DPYVVELKNQNKIEQAVFTFYLPPEDKHKGYLTIGGIEERFYEGPLTYEKLNHD--LYWQVDLD-VHFGNVS--SEKANV 335 (453)
T ss_pred CCHHHHHHHcCCCCccEEEEEecCCCCCCeEEEECCcChhhcCCceEEEEcCCC--ceEEEEEE-EEECCEe--cCceeE
Confidence 56689999999 8899999974 3579999999974 5799999999754 69999998 5777754 346789
Q ss_pred EEcccccceeeCHHHHHHHHHHHHHHhccCCCccCCCCCCcCcccccccCCccccccccccceEEEEEecCCCCeEEEEc
Q 016916 263 VFDSGSSYTYLNRVTYQTLTSIMKKELSAKSLKEAPEDETLPLCWKGRRPFKNVHDVKKCFRTLALSFTDGKTRTLFELT 342 (380)
Q Consensus 263 iiDSGTs~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~P~l~f~f~g~~~~~~~~l~ 342 (380)
||||||+++++|+++++++.+++..... .. ......+|+.. .+|+|+|.|+| .+++|+
T Consensus 336 IiDSGTsli~lP~~~~~ai~~~l~~~~~----~~--~~~y~~~C~~~------------~lP~~~f~f~g----~~~~L~ 393 (453)
T PTZ00147 336 IVDSGTSVITVPTEFLNKFVESLDVFKV----PF--LPLYVTTCNNT------------KLPTLEFRSPN----KVYTLE 393 (453)
T ss_pred EECCCCchhcCCHHHHHHHHHHhCCeec----CC--CCeEEEeCCCC------------CCCeEEEEECC----EEEEEC
Confidence 9999999999999999999988854211 11 11223568752 48999999986 999999
Q ss_pred CCeEEEEeCC--CeEEE-EEEeCCcCCCCCeeEEcccc
Q 016916 343 PEAYLIISNK--GNVCL-GILNGAEVGLQDLNVIGGIG 377 (380)
Q Consensus 343 ~~~y~~~~~~--~~~C~-~~~~~~~~~~~~~~IlG~~~ 377 (380)
|++|+++..+ ...|+ ++...+. ..+.||||+++
T Consensus 394 p~~yi~~~~~~~~~~C~~~i~~~~~--~~~~~ILGd~F 429 (453)
T PTZ00147 394 PEYYLQPIEDIGSALCMLNIIPIDL--EKNTFILGDPF 429 (453)
T ss_pred HHHheeccccCCCcEEEEEEEECCC--CCCCEEECHHH
Confidence 9999976432 35797 4655431 12479999975
No 17
>PTZ00013 plasmepsin 4 (PM4); Provisional
Probab=100.00 E-value=1.8e-43 Score=348.88 Aligned_cols=284 Identities=19% Similarity=0.262 Sum_probs=216.8
Q ss_pred EEEEecCCCCCeeEEEEEEecCCCcEEEEEEEcCCCceEEeCCCCCCCCCCCCCCCCCCCCCCCCCCCccccCcCCCCCC
Q 016916 38 LFQVHGNVYPTGYYNVTMYIGQPARPYFLDLDTGSDLTWLQCDAPCVRCVEAPHPLYRPSNDLVPCEDPICASLHAPGHH 117 (380)
Q Consensus 38 ~lpl~~~~~~~~~y~~~i~vGtP~Q~~~v~~DTGSs~~wv~~~~~c~~C~~~~~~~f~p~~S~~~c~~~~c~~~~~~~~~ 117 (380)
.+||.. +.+.+|+++|+||||||++.|+|||||+++||+|. .|..+.++.++.|+|++|+ +++.
T Consensus 128 ~~~l~d--~~n~~Yy~~i~IGTP~Q~f~vi~DTGSsdlWV~s~-~C~~~~C~~~~~yd~s~Ss------T~~~------- 191 (450)
T PTZ00013 128 VIELDD--VANIMFYGEGEVGDNHQKFMLIFDTGSANLWVPSK-KCDSIGCSIKNLYDSSKSK------SYEK------- 191 (450)
T ss_pred ceeeec--cCCCEEEEEEEECCCCeEEEEEEeCCCCceEEecc-cCCccccccCCCccCccCc------cccc-------
Confidence 445542 23558999999999999999999999999999999 8974333457899999884 1221
Q ss_pred CCCCCCCCceeEEeCCCCeEEEEEEEEEEEEeecCCCcCCCceEEeeeEecCCC---CCCCCcceEEeeCCCCC------
Q 016916 118 NCEDPAQCDYELEYADGGSSLGVLVKDAFAFNYTNGQRLNPRLALGCGYNQVPG---ASYHPLDGILGLGKGKS------ 188 (380)
Q Consensus 118 ~c~~~~~~~~~i~Y~~Gs~~~G~l~~D~v~l~~~~g~~~~~~~~FG~~~~~~~~---~~~~~~~GIlGLg~~~~------ 188 (380)
..|.+++.|++| .+.|.+++|+|+|+ ...++ ..|+++...... +.....+||||||+...
T Consensus 192 -----~~~~~~i~YG~G-sv~G~~~~Dtv~iG----~~~~~-~~f~~~~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~~~ 260 (450)
T PTZ00013 192 -----DGTKVDITYGSG-TVKGFFSKDLVTLG----HLSMP-YKFIEVTDTDDLEPIYSSSEFDGILGLGWKDLSIGSID 260 (450)
T ss_pred -----CCcEEEEEECCc-eEEEEEEEEEEEEC----CEEEc-cEEEEEEeccccccceecccccceecccCCccccccCC
Confidence 357999999999 59999999999995 44454 578888765321 23346899999999754
Q ss_pred chhhhccccccc-cceeeeeecC--CCceeEEECCCCC--CCCCcEEeecccCCCCCeeEEeeEEEECCEEeeeCCCCEE
Q 016916 189 SIVSQLHSQKLI-RNVVGHCLSG--GGGGFLFFGDDLY--DSSRVVWTSMSSDYTKYYSPGVAELFFGGETTGLKNLPVV 263 (380)
Q Consensus 189 s~~~~l~~~g~i-~~~Fs~~l~~--~~~G~l~~G~~~~--~~g~l~~~pl~~~~~~~w~v~l~~i~vg~~~~~~~~~~ai 263 (380)
+++.+|++||+| +++||+||+. ...|.|+|||+++ +.|++.|+|+... .+|+|.++ +.+|.... ....+|
T Consensus 261 p~~~~L~~qg~I~~~vFS~~L~~~~~~~G~L~fGGiD~~~y~G~L~y~pv~~~--~yW~I~l~-v~~G~~~~--~~~~aI 335 (450)
T PTZ00013 261 PIVVELKNQNKIDNALFTFYLPVHDVHAGYLTIGGIEEKFYEGNITYEKLNHD--LYWQIDLD-VHFGKQTM--QKANVI 335 (450)
T ss_pred CHHHHHHhccCcCCcEEEEEecCCCCCCCEEEECCcCccccccceEEEEcCcC--ceEEEEEE-EEECceec--cccceE
Confidence 466789999999 8899999974 3579999999974 5799999999765 69999998 77776543 457899
Q ss_pred EcccccceeeCHHHHHHHHHHHHHHhccCCCccCCCCCCcCcccccccCCccccccccccceEEEEEecCCCCeEEEEcC
Q 016916 264 FDSGSSYTYLNRVTYQTLTSIMKKELSAKSLKEAPEDETLPLCWKGRRPFKNVHDVKKCFRTLALSFTDGKTRTLFELTP 343 (380)
Q Consensus 264 iDSGTs~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~P~l~f~f~g~~~~~~~~l~~ 343 (380)
+||||+++++|+++++++.+.+..... .. ......+|+. ..+|+|+|+|+| .+++|+|
T Consensus 336 lDSGTSli~lP~~~~~~i~~~l~~~~~-----~~-~~~y~~~C~~------------~~lP~i~F~~~g----~~~~L~p 393 (450)
T PTZ00013 336 VDSGTTTITAPSEFLNKFFANLNVIKV-----PF-LPFYVTTCDN------------KEMPTLEFKSAN----NTYTLEP 393 (450)
T ss_pred ECCCCccccCCHHHHHHHHHHhCCeec-----CC-CCeEEeecCC------------CCCCeEEEEECC----EEEEECH
Confidence 999999999999999988887753211 01 1123356864 247999999986 9999999
Q ss_pred CeEEEEe--CCCeEEE-EEEeCCcCCCCCeeEEcccc
Q 016916 344 EAYLIIS--NKGNVCL-GILNGAEVGLQDLNVIGGIG 377 (380)
Q Consensus 344 ~~y~~~~--~~~~~C~-~~~~~~~~~~~~~~IlG~~~ 377 (380)
++|+.+. .++..|+ ++.+.. . ..+.||||+++
T Consensus 394 ~~Yi~~~~~~~~~~C~~~i~~~~-~-~~~~~ILGd~F 428 (450)
T PTZ00013 394 EYYMNPLLDVDDTLCMITMLPVD-I-DDNTFILGDPF 428 (450)
T ss_pred HHheehhccCCCCeeEEEEEECC-C-CCCCEEECHHH
Confidence 9999753 2346897 554432 1 13479999975
No 18
>cd05473 beta_secretase_like Beta-secretase, aspartic-acid protease important in the pathogenesis of Alzheimer's disease. Beta-secretase also called BACE (beta-site of APP cleaving enzyme) or memapsin-2. Beta-secretase is an aspartic-acid protease important in the pathogenesis of Alzheimer's disease, and in the formation of myelin sheaths in peripheral nerve cells. It cleaves amyloid precursor protein (APP) to reveal the N-terminus of the beta-amyloid peptides. The beta-amyloid peptides are the major components of the amyloid plaques formed in the brain of patients with Alzheimer's disease (AD). Since BACE mediates one of the cleavages responsible for generation of AD, it is regarded as a potential target for pharmacological intervention in AD. Beta-secretase is a member of pepsin family of aspartic proteases. Same as other aspartic proteases, beta-secretase is a bilobal enzyme, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two
Probab=100.00 E-value=7.9e-43 Score=339.81 Aligned_cols=292 Identities=18% Similarity=0.219 Sum_probs=212.6
Q ss_pred eEEEEEEecCCCcEEEEEEEcCCCceEEeCCCCCCCCCCCCCCCCCCCCCCCCCCCccccCcCCCCCCCCCCCCCCceeE
Q 016916 50 YYNVTMYIGQPARPYFLDLDTGSDLTWLQCDAPCVRCVEAPHPLYRPSNDLVPCEDPICASLHAPGHHNCEDPAQCDYEL 129 (380)
Q Consensus 50 ~y~~~i~vGtP~Q~~~v~~DTGSs~~wv~~~~~c~~C~~~~~~~f~p~~S~~~c~~~~c~~~~~~~~~~c~~~~~~~~~i 129 (380)
.|+++|.||||+|++.|+|||||+++||+|. .|.. .++.|+|++|+ +|+. ..|.|++
T Consensus 3 ~Y~~~i~iGtP~Q~~~v~~DTGSs~lWv~~~-~~~~----~~~~f~~~~Ss------T~~~------------~~~~~~i 59 (364)
T cd05473 3 GYYIEMLIGTPPQKLNILVDTGSSNFAVAAA-PHPF----IHTYFHRELSS------TYRD------------LGKGVTV 59 (364)
T ss_pred ceEEEEEecCCCceEEEEEecCCcceEEEcC-CCcc----ccccCCchhCc------Cccc------------CCceEEE
Confidence 6999999999999999999999999999998 7743 36789999985 1221 3679999
Q ss_pred EeCCCCeEEEEEEEEEEEEeecCCCcCCCceEEeeeEecCCCC-CCCCcceEEeeCCCCC--------chhhhccccccc
Q 016916 130 EYADGGSSLGVLVKDAFAFNYTNGQRLNPRLALGCGYNQVPGA-SYHPLDGILGLGKGKS--------SIVSQLHSQKLI 200 (380)
Q Consensus 130 ~Y~~Gs~~~G~l~~D~v~l~~~~g~~~~~~~~FG~~~~~~~~~-~~~~~~GIlGLg~~~~--------s~~~~l~~~g~i 200 (380)
.|++| ++.|.+++|+|+|++. ......+.|++++.....+ .....+||||||+..+ +++.+|.+|+.+
T Consensus 60 ~Yg~G-s~~G~~~~D~v~ig~~--~~~~~~~~~~~~~~~~~~~~~~~~~dGIlGLg~~~l~~~~~~~~~~~~~l~~q~~~ 136 (364)
T cd05473 60 PYTQG-SWEGELGTDLVSIPKG--PNVTFRANIAAITESENFFLNGSNWEGILGLAYAELARPDSSVEPFFDSLVKQTGI 136 (364)
T ss_pred EECcc-eEEEEEEEEEEEECCC--CccceEEeeEEEeccccceecccccceeeeecccccccCCCCCCCHHHHHHhccCC
Confidence 99999 6899999999999631 1111122355655443222 2235799999998754 355688888888
Q ss_pred cceeeeeecC-----------CCceeEEECCCCC--CCCCcEEeecccCCCCCeeEEeeEEEECCEEeeeC-----CCCE
Q 016916 201 RNVVGHCLSG-----------GGGGFLFFGDDLY--DSSRVVWTSMSSDYTKYYSPGVAELFFGGETTGLK-----NLPV 262 (380)
Q Consensus 201 ~~~Fs~~l~~-----------~~~G~l~~G~~~~--~~g~l~~~pl~~~~~~~w~v~l~~i~vg~~~~~~~-----~~~a 262 (380)
+++||+||.. ...|.|+||++++ +.+++.|+|+.+. .+|.|.+++|+++++.+... ...+
T Consensus 137 ~~~FS~~l~~~~~~~~~~~~~~~~g~l~fGg~D~~~~~g~l~~~p~~~~--~~~~v~l~~i~vg~~~~~~~~~~~~~~~~ 214 (364)
T cd05473 137 PDVFSLQMCGAGLPVNGSASGTVGGSMVIGGIDPSLYKGDIWYTPIREE--WYYEVIILKLEVGGQSLNLDCKEYNYDKA 214 (364)
T ss_pred ccceEEEecccccccccccccCCCcEEEeCCcCHhhcCCCceEEecCcc--eeEEEEEEEEEECCEecccccccccCccE
Confidence 8899998741 2379999999864 5799999999876 69999999999999987643 1369
Q ss_pred EEcccccceeeCHHHHHHHHHHHHHHhccCCCccCCCCCCcCcccccccCCccccccccccceEEEEEecCC--CCeEEE
Q 016916 263 VFDSGSSYTYLNRVTYQTLTSIMKKELSAKSLKEAPEDETLPLCWKGRRPFKNVHDVKKCFRTLALSFTDGK--TRTLFE 340 (380)
Q Consensus 263 iiDSGTs~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~P~l~f~f~g~~--~~~~~~ 340 (380)
||||||++++||+++|++|.+++.++................+|++... .....+|+|+|+|+|.. .+.+++
T Consensus 215 ivDSGTs~~~lp~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~C~~~~~------~~~~~~P~i~~~f~g~~~~~~~~l~ 288 (364)
T cd05473 215 IVDSGTTNLRLPVKVFNAAVDAIKAASLIEDFPDGFWLGSQLACWQKGT------TPWEIFPKISIYLRDENSSQSFRIT 288 (364)
T ss_pred EEeCCCcceeCCHHHHHHHHHHHHhhcccccCCccccCcceeecccccC------chHhhCCcEEEEEccCCCCceEEEE
Confidence 9999999999999999999999988754211111000111247986431 11135899999998621 135789
Q ss_pred EcCCeEEEEeC---CCeEEEEEEeCCcCCCCCeeEEccccc
Q 016916 341 LTPEAYLIISN---KGNVCLGILNGAEVGLQDLNVIGGIGD 378 (380)
Q Consensus 341 l~~~~y~~~~~---~~~~C~~~~~~~~~~~~~~~IlG~~~~ 378 (380)
|+|++|+.... .+..|+++..... .+.||||+++.
T Consensus 289 l~p~~Y~~~~~~~~~~~~C~~~~~~~~---~~~~ILG~~fl 326 (364)
T cd05473 289 ILPQLYLRPVEDHGTQLDCYKFAISQS---TNGTVIGAVIM 326 (364)
T ss_pred ECHHHhhhhhccCCCcceeeEEeeecC---CCceEEeeeeE
Confidence 99999998642 2457986543221 24699999864
No 19
>cd05476 pepsin_A_like_plant Chroloplast Nucleoids DNA-binding Protease and Nucellin, pepsin-like aspartic proteases from plants. This family contains pepsin like aspartic proteases from plants including Chloroplast Nucleoids DNA-binding Protease and Nucellin. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco and Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The enzymes specifically cleave bonds in peptides which
Probab=100.00 E-value=5.3e-41 Score=313.17 Aligned_cols=226 Identities=39% Similarity=0.697 Sum_probs=192.7
Q ss_pred eEEEEEEecCCCcEEEEEEEcCCCceEEeCCCCCCCCCCCCCCCCCCCCCCCCCCCccccCcCCCCCCCCCCCCCCceeE
Q 016916 50 YYNVTMYIGQPARPYFLDLDTGSDLTWLQCDAPCVRCVEAPHPLYRPSNDLVPCEDPICASLHAPGHHNCEDPAQCDYEL 129 (380)
Q Consensus 50 ~y~~~i~vGtP~Q~~~v~~DTGSs~~wv~~~~~c~~C~~~~~~~f~p~~S~~~c~~~~c~~~~~~~~~~c~~~~~~~~~i 129 (380)
+|+++|+||||||++.|+|||||+++||+| |.|.+
T Consensus 1 ~Y~~~i~iGtP~q~~~v~~DTGSs~~wv~~---------------------------------------------~~~~~ 35 (265)
T cd05476 1 EYLVTLSIGTPPQPFSLIVDTGSDLTWTQC---------------------------------------------CSYEY 35 (265)
T ss_pred CeEEEEecCCCCcceEEEecCCCCCEEEcC---------------------------------------------CceEe
Confidence 599999999999999999999999999964 15778
Q ss_pred EeCCCCeEEEEEEEEEEEEeecCCCcCCCceEEeeeEecCCCCCCCCcceEEeeCCCCCchhhhccccccccceeeeeec
Q 016916 130 EYADGGSSLGVLVKDAFAFNYTNGQRLNPRLALGCGYNQVPGASYHPLDGILGLGKGKSSIVSQLHSQKLIRNVVGHCLS 209 (380)
Q Consensus 130 ~Y~~Gs~~~G~l~~D~v~l~~~~g~~~~~~~~FG~~~~~~~~~~~~~~~GIlGLg~~~~s~~~~l~~~g~i~~~Fs~~l~ 209 (380)
.|++|+.+.|.+++|+|+|++.+ ..++++.|||++.... +.....+||||||+...+++.||+.++ ++||+||.
T Consensus 36 ~Y~dg~~~~G~~~~D~v~~g~~~--~~~~~~~Fg~~~~~~~-~~~~~~~GIlGLg~~~~s~~~ql~~~~---~~Fs~~l~ 109 (265)
T cd05476 36 SYGDGSSTSGVLATETFTFGDSS--VSVPNVAFGCGTDNEG-GSFGGADGILGLGRGPLSLVSQLGSTG---NKFSYCLV 109 (265)
T ss_pred EeCCCceeeeeEEEEEEEecCCC--CccCCEEEEecccccC-CccCCCCEEEECCCCcccHHHHhhccc---CeeEEEcc
Confidence 99998899999999999996310 1678999999998754 445678999999999999999999887 79999997
Q ss_pred C----CCceeEEECCCCC-CCCCcEEeecccCC--CCCeeEEeeEEEECCEEeee----------CCCCEEEccccccee
Q 016916 210 G----GGGGFLFFGDDLY-DSSRVVWTSMSSDY--TKYYSPGVAELFFGGETTGL----------KNLPVVFDSGSSYTY 272 (380)
Q Consensus 210 ~----~~~G~l~~G~~~~-~~g~l~~~pl~~~~--~~~w~v~l~~i~vg~~~~~~----------~~~~aiiDSGTs~~~ 272 (380)
+ ...|+|+||+++. +.+++.|+|+...+ ..+|.|.+++|+++++.+.+ ....+|+||||++++
T Consensus 110 ~~~~~~~~G~l~fGg~d~~~~~~l~~~p~~~~~~~~~~~~v~l~~i~v~~~~~~~~~~~~~~~~~~~~~ai~DTGTs~~~ 189 (265)
T cd05476 110 PHDDTGGSSPLILGDAADLGGSGVVYTPLVKNPANPTYYYVNLEGISVGGKRLPIPPSVFAIDSDGSGGTIIDSGTTLTY 189 (265)
T ss_pred CCCCCCCCCeEEECCcccccCCCceEeecccCCCCCCceEeeeEEEEECCEEecCCchhcccccCCCCcEEEeCCCcceE
Confidence 4 4589999999875 57999999999862 27999999999999998752 347899999999999
Q ss_pred eCHHHHHHHHHHHHHHhccCCCccCCCCCCcCcccccccCCccccccccccceEEEEEecCCCCeEEEEcCCeEEEEeCC
Q 016916 273 LNRVTYQTLTSIMKKELSAKSLKEAPEDETLPLCWKGRRPFKNVHDVKKCFRTLALSFTDGKTRTLFELTPEAYLIISNK 352 (380)
Q Consensus 273 lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~P~l~f~f~g~~~~~~~~l~~~~y~~~~~~ 352 (380)
||+++| |+|+|+|++ +.++.+++++|+++..+
T Consensus 190 lp~~~~---------------------------------------------P~i~~~f~~---~~~~~i~~~~y~~~~~~ 221 (265)
T cd05476 190 LPDPAY---------------------------------------------PDLTLHFDG---GADLELPPENYFVDVGE 221 (265)
T ss_pred cCcccc---------------------------------------------CCEEEEECC---CCEEEeCcccEEEECCC
Confidence 998766 468999995 59999999999997766
Q ss_pred CeEEEEEEeCCcCCCCCeeEEcccc
Q 016916 353 GNVCLGILNGAEVGLQDLNVIGGIG 377 (380)
Q Consensus 353 ~~~C~~~~~~~~~~~~~~~IlG~~~ 377 (380)
+..|+++.... ....||||+.+
T Consensus 222 ~~~C~~~~~~~---~~~~~ilG~~f 243 (265)
T cd05476 222 GVVCLAILSSS---SGGVSILGNIQ 243 (265)
T ss_pred CCEEEEEecCC---CCCcEEEChhh
Confidence 78999988753 24579999875
No 20
>cd06097 Aspergillopepsin_like Aspergillopepsin_like, aspartic proteases of fungal origin. The members of this family are aspartic proteases of fungal origin, including aspergillopepsin, rhizopuspepsin, endothiapepsin, and rodosporapepsin. The various fungal species in this family may be the most economically important genus of fungi. They may serve as virulence factors or as industrial aids. For example, Aspergillopepsin from A. fumigatus is involved in invasive aspergillosis owing to its elastolytic activity and Aspergillopepsins from the mold A. saitoi are used in fermentation industry. Aspartic proteinases are a group of proteolytic enzymes in which the scissile peptide bond is attacked by a nucleophilic water molecule activated by two aspartic residues in a DT(S)G motif at the active site. They have a similar fold composed of two beta-barrel domains. Between the N-terminal and C-terminal domains, each of which contributes one catalytic aspartic residue, there is an extended active-
Probab=100.00 E-value=1.4e-40 Score=312.49 Aligned_cols=212 Identities=21% Similarity=0.314 Sum_probs=178.2
Q ss_pred EEEEEEecCCCcEEEEEEEcCCCceEEeCCCCCCCCCCCCCCCCCCCCCCCCCCCccccCcCCCCCCCCCCCCCCceeEE
Q 016916 51 YNVTMYIGQPARPYFLDLDTGSDLTWLQCDAPCVRCVEAPHPLYRPSNDLVPCEDPICASLHAPGHHNCEDPAQCDYELE 130 (380)
Q Consensus 51 y~~~i~vGtP~Q~~~v~~DTGSs~~wv~~~~~c~~C~~~~~~~f~p~~S~~~c~~~~c~~~~~~~~~~c~~~~~~~~~i~ 130 (380)
|+++|+||||||++.|+|||||+++||+|. .|..|..+.++.|+|++|+ +|+. .+.|.|.+.
T Consensus 1 Y~~~i~vGtP~Q~~~v~~DTGS~~~wv~~~-~c~~~~~~~~~~y~~~~Ss------t~~~-----------~~~~~~~i~ 62 (278)
T cd06097 1 YLTPVKIGTPPQTLNLDLDTGSSDLWVFSS-ETPAAQQGGHKLYDPSKSS------TAKL-----------LPGATWSIS 62 (278)
T ss_pred CeeeEEECCCCcEEEEEEeCCCCceeEeeC-CCCchhhccCCcCCCccCc------ccee-----------cCCcEEEEE
Confidence 789999999999999999999999999999 9998988778889998884 1211 135689999
Q ss_pred eCCCCeEEEEEEEEEEEEeecCCCcCCCceEEeeeEecCCC-CCCCCcceEEeeCCCCCc---------hhhhccccccc
Q 016916 131 YADGGSSLGVLVKDAFAFNYTNGQRLNPRLALGCGYNQVPG-ASYHPLDGILGLGKGKSS---------IVSQLHSQKLI 200 (380)
Q Consensus 131 Y~~Gs~~~G~l~~D~v~l~~~~g~~~~~~~~FG~~~~~~~~-~~~~~~~GIlGLg~~~~s---------~~~~l~~~g~i 200 (380)
|++|+.+.|.+++|+|+|+ ...++++.||+++..... +.....+||||||+...+ +..+|.+++.
T Consensus 63 Y~~G~~~~G~~~~D~v~ig----~~~~~~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~~~~~~~~~~~~~~~l~~~~~- 137 (278)
T cd06097 63 YGDGSSASGIVYTDTVSIG----GVEVPNQAIELATAVSASFFSDTASDGLLGLAFSSINTVQPPKQKTFFENALSSLD- 137 (278)
T ss_pred eCCCCeEEEEEEEEEEEEC----CEEECCeEEEEEeecCccccccccccceeeeccccccccccCCCCCHHHHHHHhcc-
Confidence 9999779999999999995 457889999999886432 344678999999987543 4556766654
Q ss_pred cceeeeeecCCCceeEEECCCCC--CCCCcEEeecccCCCCCeeEEeeEEEECCEE-eeeCCCCEEEcccccceeeCHHH
Q 016916 201 RNVVGHCLSGGGGGFLFFGDDLY--DSSRVVWTSMSSDYTKYYSPGVAELFFGGET-TGLKNLPVVFDSGSSYTYLNRVT 277 (380)
Q Consensus 201 ~~~Fs~~l~~~~~G~l~~G~~~~--~~g~l~~~pl~~~~~~~w~v~l~~i~vg~~~-~~~~~~~aiiDSGTs~~~lp~~~ 277 (380)
+++||+||.+...|+|+|||+++ +.|+++|+|+.... .+|.|.+++|+++++. .......+||||||+++++|+++
T Consensus 138 ~~~Fs~~l~~~~~G~l~fGg~D~~~~~g~l~~~pi~~~~-~~w~v~l~~i~v~~~~~~~~~~~~~iiDSGTs~~~lP~~~ 216 (278)
T cd06097 138 APLFTADLRKAAPGFYTFGYIDESKYKGEISWTPVDNSS-GFWQFTSTSYTVGGDAPWSRSGFSAIADTGTTLILLPDAI 216 (278)
T ss_pred CceEEEEecCCCCcEEEEeccChHHcCCceEEEEccCCC-cEEEEEEeeEEECCcceeecCCceEEeecCCchhcCCHHH
Confidence 88999999876789999999874 67999999998743 7999999999999883 33346789999999999999999
Q ss_pred HHHHHHHHH
Q 016916 278 YQTLTSIMK 286 (380)
Q Consensus 278 ~~~l~~~i~ 286 (380)
+++|.++++
T Consensus 217 ~~~l~~~l~ 225 (278)
T cd06097 217 VEAYYSQVP 225 (278)
T ss_pred HHHHHHhCc
Confidence 999988884
No 21
>cd05474 SAP_like SAPs, pepsin-like proteinases secreted from pathogens to degrade host proteins. SAPs (Secreted aspartic proteinases) are secreted from a group of pathogenic fungi, predominantly Candida species. They are secreted from the pathogen to degrade host proteins. SAP is one of the most significant extracellular hydrolytic enzymes produced by C. albicans. SAP proteins, encoded by a family of 10 SAP genes. All 10 SAP genes of C. albicans encode preproenzymes, approximately 60 amino acid longer than the mature enzyme, which are processed when transported via the secretory pathway. The mature enzymes contain sequence motifs typical for all aspartyl proteinases, including the two conserved aspartate residues other active site and conserved cysteine residues implicated in the maintenance of the three-dimensional structure. Most Sap proteins contain putative N-glycosylation sites, but it remains to be determined which Sap proteins are glycosylated. This family of aspartate proteases
Probab=100.00 E-value=1.5e-40 Score=314.64 Aligned_cols=245 Identities=23% Similarity=0.374 Sum_probs=203.4
Q ss_pred eEEEEEEecCCCcEEEEEEEcCCCceEEeCCCCCCCCCCCCCCCCCCCCCCCCCCCccccCcCCCCCCCCCCCCCCceeE
Q 016916 50 YYNVTMYIGQPARPYFLDLDTGSDLTWLQCDAPCVRCVEAPHPLYRPSNDLVPCEDPICASLHAPGHHNCEDPAQCDYEL 129 (380)
Q Consensus 50 ~y~~~i~vGtP~Q~~~v~~DTGSs~~wv~~~~~c~~C~~~~~~~f~p~~S~~~c~~~~c~~~~~~~~~~c~~~~~~~~~i 129 (380)
.|+++|.||||+|++.|+|||||+++||+ .|++
T Consensus 2 ~Y~~~i~iGtp~q~~~v~~DTgS~~~wv~-----------------------------------------------~~~~ 34 (295)
T cd05474 2 YYSAELSVGTPPQKVTVLLDTGSSDLWVP-----------------------------------------------DFSI 34 (295)
T ss_pred eEEEEEEECCCCcEEEEEEeCCCCcceee-----------------------------------------------eeEE
Confidence 69999999999999999999999999995 3468
Q ss_pred EeCCCCeEEEEEEEEEEEEeecCCCcCCCceEEeeeEecCCCCCCCCcceEEeeCCCCC-----------chhhhccccc
Q 016916 130 EYADGGSSLGVLVKDAFAFNYTNGQRLNPRLALGCGYNQVPGASYHPLDGILGLGKGKS-----------SIVSQLHSQK 198 (380)
Q Consensus 130 ~Y~~Gs~~~G~l~~D~v~l~~~~g~~~~~~~~FG~~~~~~~~~~~~~~~GIlGLg~~~~-----------s~~~~l~~~g 198 (380)
.|++|+.+.|.+++|+|+|+ ...++++.|||++.. ...+||||||+... +++.+|+++|
T Consensus 35 ~Y~~g~~~~G~~~~D~v~~g----~~~~~~~~fg~~~~~------~~~~GilGLg~~~~~~~~~~~~~~~s~~~~L~~~g 104 (295)
T cd05474 35 SYGDGTSASGTWGTDTVSIG----GATVKNLQFAVANST------SSDVGVLGIGLPGNEATYGTGYTYPNFPIALKKQG 104 (295)
T ss_pred EeccCCcEEEEEEEEEEEEC----CeEecceEEEEEecC------CCCcceeeECCCCCcccccCCCcCCCHHHHHHHCC
Confidence 89998799999999999995 456789999999874 23699999999775 6889999999
Q ss_pred cc-cceeeeeecC--CCceeEEECCCCC--CCCCcEEeecccCCC----CCeeEEeeEEEECCEEee----eCCCCEEEc
Q 016916 199 LI-RNVVGHCLSG--GGGGFLFFGDDLY--DSSRVVWTSMSSDYT----KYYSPGVAELFFGGETTG----LKNLPVVFD 265 (380)
Q Consensus 199 ~i-~~~Fs~~l~~--~~~G~l~~G~~~~--~~g~l~~~pl~~~~~----~~w~v~l~~i~vg~~~~~----~~~~~aiiD 265 (380)
+| +++||+||.+ ...|.|+||+++. +.+++.|+|+..... .+|.|.+++|+++++.+. .....++||
T Consensus 105 ~i~~~~Fsl~l~~~~~~~g~l~~Gg~d~~~~~g~~~~~p~~~~~~~~~~~~~~v~l~~i~v~~~~~~~~~~~~~~~~iiD 184 (295)
T cd05474 105 LIKKNAYSLYLNDLDASTGSILFGGVDTAKYSGDLVTLPIVNDNGGSEPSELSVTLSSISVNGSSGNTTLLSKNLPALLD 184 (295)
T ss_pred cccceEEEEEeCCCCCCceeEEEeeeccceeeceeEEEeCcCcCCCCCceEEEEEEEEEEEEcCCCcccccCCCccEEEC
Confidence 99 8999999986 3689999999864 568999999998742 689999999999988753 345799999
Q ss_pred ccccceeeCHHHHHHHHHHHHHHhccCCCccCCCCCCcCcccccccCCccccccccccceEEEEEecCCCCeEEEEcCCe
Q 016916 266 SGSSYTYLNRVTYQTLTSIMKKELSAKSLKEAPEDETLPLCWKGRRPFKNVHDVKKCFRTLALSFTDGKTRTLFELTPEA 345 (380)
Q Consensus 266 SGTs~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~P~l~f~f~g~~~~~~~~l~~~~ 345 (380)
|||++++||+++|++|.+++.+.... . ......+|+... . |+|+|+|+| ++++|++++
T Consensus 185 SGt~~~~lP~~~~~~l~~~~~~~~~~-----~-~~~~~~~C~~~~-----------~-p~i~f~f~g----~~~~i~~~~ 242 (295)
T cd05474 185 SGTTLTYLPSDIVDAIAKQLGATYDS-----D-EGLYVVDCDAKD-----------D-GSLTFNFGG----ATISVPLSD 242 (295)
T ss_pred CCCccEeCCHHHHHHHHHHhCCEEcC-----C-CcEEEEeCCCCC-----------C-CEEEEEECC----eEEEEEHHH
Confidence 99999999999999999998765431 1 122346787642 3 999999986 999999999
Q ss_pred EEEEeCC----CeEEE-EEEeCCcCCCCCeeEEcccc
Q 016916 346 YLIISNK----GNVCL-GILNGAEVGLQDLNVIGGIG 377 (380)
Q Consensus 346 y~~~~~~----~~~C~-~~~~~~~~~~~~~~IlG~~~ 377 (380)
|+++... +..|+ ++.... .+.||||+.+
T Consensus 243 ~~~~~~~~~~~~~~C~~~i~~~~----~~~~iLG~~f 275 (295)
T cd05474 243 LVLPASTDDGGDGACYLGIQPST----SDYNILGDTF 275 (295)
T ss_pred hEeccccCCCCCCCeEEEEEeCC----CCcEEeChHH
Confidence 9997642 56785 666554 2579999875
No 22
>PF00026 Asp: Eukaryotic aspartyl protease The Prosite entry also includes Pfam:PF00077.; InterPro: IPR001461 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to MEROPS peptidase family A1 (pepsin family, clan AA). The type example is pepsin A from Homo sapiens (Human) . More than 70 aspartic peptidases, from all from eukaryotic organisms, have been identified. These include pepsins, cathepsins, and renins. The enzymes are synthesised with signal peptides, and the proenzymes are secreted or passed into the lysosomal/endosomal system, where acidification leads to autocatalytic activation. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residues in both the P1 and P1' positions []. Crystallography has shown the active site to form a groove across the junction of the two lobes, with an extended loop projecting over the cleft to form an 11-residue flap, which encloses substrates and inhibitors within the active site []. Specificity is determined by several hydrophobic residues surrounding the catalytic aspartates, and by three residues in the flap. Cysteine residues are well conserved within the pepsin family, pepsin itself containing three disulphide loops. The first loop is found in all but the fungal enzymes, and is usually around five residues in length, but is longer in barrierpepsin and candidapepsin; the second loop is also small and found only in the animal enzymes; and the third loop is the largest, found in all members of the family, except for the cysteine-free polyporopepsin. The loops are spread unequally throughout the two lobes, suggesting that they formed after the initial gene duplication and fusion event []. This family does not include the retroviral nor retrotransposon aspartic proteases which are much smaller and appear to be homologous to the single domain aspartic proteases.; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 1CZI_E 3CMS_A 1CMS_A 4CMS_A 1YG9_A 2NR6_A 3LIZ_A 1FLH_A 3UTL_A 1QRP_E ....
Probab=100.00 E-value=7.3e-40 Score=312.63 Aligned_cols=278 Identities=27% Similarity=0.448 Sum_probs=219.4
Q ss_pred eEEEEEEecCCCcEEEEEEEcCCCceEEeCCCCCCCC-CCCCCCCCCCCCCCCCCCCccccCcCCCCCCCCCCCCCCcee
Q 016916 50 YYNVTMYIGQPARPYFLDLDTGSDLTWLQCDAPCVRC-VEAPHPLYRPSNDLVPCEDPICASLHAPGHHNCEDPAQCDYE 128 (380)
Q Consensus 50 ~y~~~i~vGtP~Q~~~v~~DTGSs~~wv~~~~~c~~C-~~~~~~~f~p~~S~~~c~~~~c~~~~~~~~~~c~~~~~~~~~ 128 (380)
+|+++|.||||+|+++|++||||+++||++. .|..| ....+..|++++|+ .|+. ..+.+.
T Consensus 1 ~Y~~~v~iGtp~q~~~~~iDTGS~~~wv~~~-~c~~~~~~~~~~~y~~~~S~------t~~~------------~~~~~~ 61 (317)
T PF00026_consen 1 QYYINVTIGTPPQTFRVLIDTGSSDTWVPSS-NCNSCSSCASSGFYNPSKSS------TFSN------------QGKPFS 61 (317)
T ss_dssp EEEEEEEETTTTEEEEEEEETTBSSEEEEBT-TECSHTHHCTSC-BBGGGST------TEEE------------EEEEEE
T ss_pred CeEEEEEECCCCeEEEEEEecccceeeecee-cccccccccccccccccccc------cccc------------ceeeee
Confidence 5999999999999999999999999999998 88866 33356789998774 1222 245789
Q ss_pred EEeCCCCeEEEEEEEEEEEEeecCCCcCCCceEEeeeEecCCC-CCCCCcceEEeeCCC-------CCchhhhccccccc
Q 016916 129 LEYADGGSSLGVLVKDAFAFNYTNGQRLNPRLALGCGYNQVPG-ASYHPLDGILGLGKG-------KSSIVSQLHSQKLI 200 (380)
Q Consensus 129 i~Y~~Gs~~~G~l~~D~v~l~~~~g~~~~~~~~FG~~~~~~~~-~~~~~~~GIlGLg~~-------~~s~~~~l~~~g~i 200 (380)
+.|++|+ +.|.+++|+|.|+ +..+.++.||++...... +.....+||||||+. ..+++.+|.++|+|
T Consensus 62 ~~y~~g~-~~G~~~~D~v~ig----~~~~~~~~f~~~~~~~~~~~~~~~~~GilGLg~~~~~~~~~~~~~~~~l~~~g~i 136 (317)
T PF00026_consen 62 ISYGDGS-VSGNLVSDTVSIG----GLTIPNQTFGLADSYSGDPFSPIPFDGILGLGFPSLSSSSTYPTFLDQLVQQGLI 136 (317)
T ss_dssp EEETTEE-EEEEEEEEEEEET----TEEEEEEEEEEEEEEESHHHHHSSSSEEEE-SSGGGSGGGTS-SHHHHHHHTTSS
T ss_pred eeccCcc-cccccccceEeee----eccccccceeccccccccccccccccccccccCCcccccccCCcceecchhhccc
Confidence 9999995 9999999999994 567788999999885322 224568999999974 35788999999999
Q ss_pred -cceeeeeecCC--CceeEEECCCCC--CCCCcEEeecccCCCCCeeEEeeEEEECCE-EeeeCCCCEEEcccccceeeC
Q 016916 201 -RNVVGHCLSGG--GGGFLFFGDDLY--DSSRVVWTSMSSDYTKYYSPGVAELFFGGE-TTGLKNLPVVFDSGSSYTYLN 274 (380)
Q Consensus 201 -~~~Fs~~l~~~--~~G~l~~G~~~~--~~g~l~~~pl~~~~~~~w~v~l~~i~vg~~-~~~~~~~~aiiDSGTs~~~lp 274 (380)
+++||++|.+. ..|.|+||+++. +.+++.|+|+... .+|.+.+.+|.+++. ........++||||+++++||
T Consensus 137 ~~~~fsl~l~~~~~~~g~l~~Gg~d~~~~~g~~~~~~~~~~--~~w~v~~~~i~i~~~~~~~~~~~~~~~Dtgt~~i~lp 214 (317)
T PF00026_consen 137 SSNVFSLYLNPSDSQNGSLTFGGYDPSKYDGDLVWVPLVSS--GYWSVPLDSISIGGESVFSSSGQQAILDTGTSYIYLP 214 (317)
T ss_dssp SSSEEEEEEESTTSSEEEEEESSEEGGGEESEEEEEEBSST--TTTEEEEEEEEETTEEEEEEEEEEEEEETTBSSEEEE
T ss_pred cccccceeeeecccccchheeeccccccccCceeccCcccc--cccccccccccccccccccccceeeeccccccccccc
Confidence 99999999864 479999999864 5799999999955 799999999999999 444444689999999999999
Q ss_pred HHHHHHHHHHHHHHhccCCCccCCCCCCcCcccccccCCccccccccccceEEEEEecCCCCeEEEEcCCeEEEEeCCC-
Q 016916 275 RVTYQTLTSIMKKELSAKSLKEAPEDETLPLCWKGRRPFKNVHDVKKCFRTLALSFTDGKTRTLFELTPEAYLIISNKG- 353 (380)
Q Consensus 275 ~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~P~l~f~f~g~~~~~~~~l~~~~y~~~~~~~- 353 (380)
++++++|++.+...... .....+|... ..+|.|+|.|++ .+++|+|++|+++....
T Consensus 215 ~~~~~~i~~~l~~~~~~--------~~~~~~c~~~-----------~~~p~l~f~~~~----~~~~i~~~~~~~~~~~~~ 271 (317)
T PF00026_consen 215 RSIFDAIIKALGGSYSD--------GVYSVPCNST-----------DSLPDLTFTFGG----VTFTIPPSDYIFKIEDGN 271 (317)
T ss_dssp HHHHHHHHHHHTTEEEC--------SEEEEETTGG-----------GGSEEEEEEETT----EEEEEEHHHHEEEESSTT
T ss_pred chhhHHHHhhhcccccc--------eeEEEecccc-----------cccceEEEeeCC----EEEEecchHhcccccccc
Confidence 99999999999765441 2223467653 358999999996 99999999999987553
Q ss_pred -eEEE-EEEeCCcCCCCCeeEEccc
Q 016916 354 -NVCL-GILNGAEVGLQDLNVIGGI 376 (380)
Q Consensus 354 -~~C~-~~~~~~~~~~~~~~IlG~~ 376 (380)
..|+ ++.........+.+|||..
T Consensus 272 ~~~C~~~i~~~~~~~~~~~~iLG~~ 296 (317)
T PF00026_consen 272 GGYCYLGIQPMDSSDDSDDWILGSP 296 (317)
T ss_dssp SSEEEESEEEESSTTSSSEEEEEHH
T ss_pred cceeEeeeecccccccCCceEecHH
Confidence 3787 4554111123568999974
No 23
>cd05471 pepsin_like Pepsin-like aspartic proteases, bilobal enzymes that cleave bonds in peptides at acidic pH. Pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, renin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (renin, cathepsin D and E, pepsin) or commercially (chymosin) important. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residu
Probab=100.00 E-value=9.7e-38 Score=292.99 Aligned_cols=239 Identities=27% Similarity=0.453 Sum_probs=194.4
Q ss_pred EEEEEEecCCCcEEEEEEEcCCCceEEeCCCCCCCCCCCCCCC--CCCCCCCCCCCCccccCcCCCCCCCCCCCCCCcee
Q 016916 51 YNVTMYIGQPARPYFLDLDTGSDLTWLQCDAPCVRCVEAPHPL--YRPSNDLVPCEDPICASLHAPGHHNCEDPAQCDYE 128 (380)
Q Consensus 51 y~~~i~vGtP~Q~~~v~~DTGSs~~wv~~~~~c~~C~~~~~~~--f~p~~S~~~c~~~~c~~~~~~~~~~c~~~~~~~~~ 128 (380)
|+++|.||||+|++.|+|||||+++||+|. .|..|..+.... |++..|. +..+..|.++
T Consensus 1 Y~~~i~iGtp~q~~~l~~DTGS~~~wv~~~-~c~~~~~~~~~~~~~~~~~s~------------------~~~~~~~~~~ 61 (283)
T cd05471 1 YYGEITIGTPPQKFSVIFDTGSSLLWVPSS-NCTSCSCQKHPRFKYDSSKSS------------------TYKDTGCTFS 61 (283)
T ss_pred CEEEEEECCCCcEEEEEEeCCCCCEEEecC-CCCccccccCCCCccCccCCc------------------eeecCCCEEE
Confidence 789999999999999999999999999999 898877654444 5554442 1112578999
Q ss_pred EEeCCCCeEEEEEEEEEEEEeecCCCcCCCceEEeeeEecCCCCCCCCcceEEeeCCCC------Cchhhhccccccc-c
Q 016916 129 LEYADGGSSLGVLVKDAFAFNYTNGQRLNPRLALGCGYNQVPGASYHPLDGILGLGKGK------SSIVSQLHSQKLI-R 201 (380)
Q Consensus 129 i~Y~~Gs~~~G~l~~D~v~l~~~~g~~~~~~~~FG~~~~~~~~~~~~~~~GIlGLg~~~------~s~~~~l~~~g~i-~ 201 (380)
+.|++| .+.|.+++|+|+|+ ...++++.|||++...........+||||||+.. .+++.+|.+++.| +
T Consensus 62 ~~Y~~g-~~~g~~~~D~v~~~----~~~~~~~~fg~~~~~~~~~~~~~~~GilGLg~~~~~~~~~~s~~~~l~~~~~i~~ 136 (283)
T cd05471 62 ITYGDG-SVTGGLGTDTVTIG----GLTIPNQTFGCATSESGDFSSSGFDGILGLGFPSLSVDGVPSFFDQLKSQGLISS 136 (283)
T ss_pred EEECCC-eEEEEEEEeEEEEC----CEEEeceEEEEEeccCCcccccccceEeecCCcccccccCCCHHHHHHHCCCCCC
Confidence 999998 89999999999996 3457899999999875434456789999999987 7899999999998 9
Q ss_pred ceeeeeecC----CCceeEEECCCCC--CCCCcEEeecccCCCCCeeEEeeEEEECCE--EeeeCCCCEEEcccccceee
Q 016916 202 NVVGHCLSG----GGGGFLFFGDDLY--DSSRVVWTSMSSDYTKYYSPGVAELFFGGE--TTGLKNLPVVFDSGSSYTYL 273 (380)
Q Consensus 202 ~~Fs~~l~~----~~~G~l~~G~~~~--~~g~l~~~pl~~~~~~~w~v~l~~i~vg~~--~~~~~~~~aiiDSGTs~~~l 273 (380)
++||+||.+ ...|.|+||+++. ..+++.|+|+......+|.|.+++|.+++. ........++|||||++++|
T Consensus 137 ~~Fs~~l~~~~~~~~~g~l~~Gg~d~~~~~~~~~~~p~~~~~~~~~~v~l~~i~v~~~~~~~~~~~~~~iiDsGt~~~~l 216 (283)
T cd05471 137 PVFSFYLGRDGDGGNGGELTFGGIDPSKYTGDLTYTPVVSNGPGYWQVPLDGISVGGKSVISSSGGGGAIVDSGTSLIYL 216 (283)
T ss_pred CEEEEEEcCCCCCCCCCEEEEcccCccccCCceEEEecCCCCCCEEEEEeCeEEECCceeeecCCCcEEEEecCCCCEeC
Confidence 999999986 3799999999875 479999999999522799999999999997 44445689999999999999
Q ss_pred CHHHHHHHHHHHHHHhccCCCccCCCCCCcCcccccccCCccccccccccceEEEEE
Q 016916 274 NRVTYQTLTSIMKKELSAKSLKEAPEDETLPLCWKGRRPFKNVHDVKKCFRTLALSF 330 (380)
Q Consensus 274 p~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~P~l~f~f 330 (380)
|+++|++|.+++.+..... .......|... ..+|+|+|+|
T Consensus 217 p~~~~~~l~~~~~~~~~~~------~~~~~~~~~~~-----------~~~p~i~f~f 256 (283)
T cd05471 217 PSSVYDAILKALGAAVSSS------DGGYGVDCSPC-----------DTLPDITFTF 256 (283)
T ss_pred CHHHHHHHHHHhCCccccc------CCcEEEeCccc-----------CcCCCEEEEE
Confidence 9999999999997765420 11111223322 4689999999
No 24
>PF14543 TAXi_N: Xylanase inhibitor N-terminal; PDB: 3HD8_A 3VLB_A 3VLA_A 3AUP_D 1T6G_A 1T6E_X 2B42_A.
Probab=99.96 E-value=7.1e-29 Score=214.46 Aligned_cols=156 Identities=41% Similarity=0.743 Sum_probs=123.8
Q ss_pred EEEEEEecCCCcEEEEEEEcCCCceEEeCCCCCCCCCCCCCCCCCCCCC----CCCCCCccccCcCCCCCCCCCCCCCCc
Q 016916 51 YNVTMYIGQPARPYFLDLDTGSDLTWLQCDAPCVRCVEAPHPLYRPSND----LVPCEDPICASLHAPGHHNCEDPAQCD 126 (380)
Q Consensus 51 y~~~i~vGtP~Q~~~v~~DTGSs~~wv~~~~~c~~C~~~~~~~f~p~~S----~~~c~~~~c~~~~~~~~~~c~~~~~~~ 126 (380)
|+++|+||||+|++.|++||||+++|++|. .+.|+|.+| .++|.++.|...+......+..+..|.
T Consensus 1 Y~~~~~iGtP~~~~~lvvDtgs~l~W~~C~----------~~~f~~~~Sst~~~v~C~s~~C~~~~~~~~~~~~~~~~C~ 70 (164)
T PF14543_consen 1 YYVSVSIGTPPQPFSLVVDTGSDLTWVQCP----------DPPFDPSKSSTYRPVPCSSPQCSSAPSFCPCCCCSNNSCP 70 (164)
T ss_dssp EEEEEECTCTTEEEEEEEETT-SSEEEET--------------STT-TTSSBEC-BTTSHHHHHCTSSBTCCTCESSEEE
T ss_pred CEEEEEeCCCCceEEEEEECCCCceEEcCC----------CcccCCccCCcccccCCCCcchhhcccccccCCCCcCccc
Confidence 899999999999999999999999999873 678999999 499999999987753223334457899
Q ss_pred eeEEeCCCCeEEEEEEEEEEEEeecCCC-cCCCceEEeeeEecCCCCCCCCcceEEeeCCCCCchhhhccccccccceee
Q 016916 127 YELEYADGGSSLGVLVKDAFAFNYTNGQ-RLNPRLALGCGYNQVPGASYHPLDGILGLGKGKSSIVSQLHSQKLIRNVVG 205 (380)
Q Consensus 127 ~~i~Y~~Gs~~~G~l~~D~v~l~~~~g~-~~~~~~~FG~~~~~~~~~~~~~~~GIlGLg~~~~s~~~~l~~~g~i~~~Fs 205 (380)
|.+.|++++.+.|.+++|+|+++..++. ..+.++.|||++...+.+ ...+||||||+.++||+.||.++ ..++||
T Consensus 71 y~~~y~~~s~~~G~l~~D~~~~~~~~~~~~~~~~~~FGC~~~~~g~~--~~~~GilGLg~~~~Sl~sQl~~~--~~~~FS 146 (164)
T PF14543_consen 71 YSQSYGDGSSSSGFLASDTLTFGSSSGGSNSVPDFIFGCATSNSGLF--YGADGILGLGRGPLSLPSQLASS--SGNKFS 146 (164)
T ss_dssp EEEEETTTEEEEEEEEEEEEEEEEESSSSEEEEEEEEEEE-GGGTSS--TTEEEEEE-SSSTTSHHHHHHHH----SEEE
T ss_pred ceeecCCCccccCceEEEEEEecCCCCCCceeeeEEEEeeeccccCC--cCCCcccccCCCcccHHHHHHHh--cCCeEE
Confidence 9999999999999999999999875322 456789999999986443 37999999999999999999887 678999
Q ss_pred eeecC---CCceeEEECC
Q 016916 206 HCLSG---GGGGFLFFGD 220 (380)
Q Consensus 206 ~~l~~---~~~G~l~~G~ 220 (380)
+||.+ ...|.|+||+
T Consensus 147 yCL~~~~~~~~g~l~fG~ 164 (164)
T PF14543_consen 147 YCLPSSSPSSSGFLSFGD 164 (164)
T ss_dssp EEB-S-SSSSEEEEEECS
T ss_pred EECCCCCCCCCEEEEeCc
Confidence 99986 5799999995
No 25
>cd05470 pepsin_retropepsin_like Cellular and retroviral pepsin-like aspartate proteases. This family includes both cellular and retroviral pepsin-like aspartate proteases. The cellular pepsin and pepsin-like enzymes are twice as long as their retroviral counterparts. The cellular pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, rennin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (rennin, cathepsin D and E, pepsin) or commercially (chymosin) important. The eukaryotic pepsin-like proteases contain two domains possessing similar topological features. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except in the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The eukaryotic pepsin-like proteases have two active site
Probab=99.88 E-value=4.3e-22 Score=160.36 Aligned_cols=107 Identities=28% Similarity=0.462 Sum_probs=88.4
Q ss_pred EEEEecCCCcEEEEEEEcCCCceEEeCCCCCCCCCCCCCCCC-CCCCCCCCCCCccccCcCCCCCCCCCCCCCCceeEEe
Q 016916 53 VTMYIGQPARPYFLDLDTGSDLTWLQCDAPCVRCVEAPHPLY-RPSNDLVPCEDPICASLHAPGHHNCEDPAQCDYELEY 131 (380)
Q Consensus 53 ~~i~vGtP~Q~~~v~~DTGSs~~wv~~~~~c~~C~~~~~~~f-~p~~S~~~c~~~~c~~~~~~~~~~c~~~~~~~~~i~Y 131 (380)
++|.||||||++.|+|||||+++||+|. .|..|..+.++.| +|++|+ +.....|.|.+.|
T Consensus 1 ~~i~vGtP~q~~~~~~DTGSs~~Wv~~~-~c~~~~~~~~~~~~~~~~ss------------------t~~~~~~~~~~~Y 61 (109)
T cd05470 1 IEIGIGTPPQTFNVLLDTGSSNLWVPSV-DCQSLAIYSHSSYDDPSASS------------------TYSDNGCTFSITY 61 (109)
T ss_pred CEEEeCCCCceEEEEEeCCCCCEEEeCC-CCCCcccccccccCCcCCCC------------------CCCCCCcEEEEEe
Confidence 4799999999999999999999999999 8988876666666 888774 1112468999999
Q ss_pred CCCCeEEEEEEEEEEEEeecCCCcCCCceEEeeeEecCCC-CCCCCcceEEee
Q 016916 132 ADGGSSLGVLVKDAFAFNYTNGQRLNPRLALGCGYNQVPG-ASYHPLDGILGL 183 (380)
Q Consensus 132 ~~Gs~~~G~l~~D~v~l~~~~g~~~~~~~~FG~~~~~~~~-~~~~~~~GIlGL 183 (380)
++| .+.|.+++|+|+|+ ...++++.|||++..... +.....+|||||
T Consensus 62 ~~g-~~~g~~~~D~v~ig----~~~~~~~~fg~~~~~~~~~~~~~~~~GilGL 109 (109)
T cd05470 62 GTG-SLSGGLSTDTVSIG----DIEVVGQAFGCATDEPGATFLPALFDGILGL 109 (109)
T ss_pred CCC-eEEEEEEEEEEEEC----CEEECCEEEEEEEecCCccccccccccccCC
Confidence 999 68899999999995 456789999999988543 334578999998
No 26
>PF14541 TAXi_C: Xylanase inhibitor C-terminal; PDB: 3AUP_D 3HD8_A 1T6G_A 1T6E_X 2B42_A 3VLB_A 3VLA_A.
Probab=99.77 E-value=2.2e-18 Score=148.58 Aligned_cols=133 Identities=24% Similarity=0.432 Sum_probs=96.8
Q ss_pred CeeEEeeEEEECCEEeeeCC---------CCEEEcccccceeeCHHHHHHHHHHHHHHhccCCCcc-CCCCCCcCccccc
Q 016916 240 YYSPGVAELFFGGETTGLKN---------LPVVFDSGSSYTYLNRVTYQTLTSIMKKELSAKSLKE-APEDETLPLCWKG 309 (380)
Q Consensus 240 ~w~v~l~~i~vg~~~~~~~~---------~~aiiDSGTs~~~lp~~~~~~l~~~i~~~~~~~~~~~-~~~~~~~~~C~~~ 309 (380)
+|.|.|++|++|++.+.++. +.+||||||++++||+++|++|+++|.+++...++.+ ......+..||+.
T Consensus 1 ~Y~v~l~~Isvg~~~l~~~~~~~~~~~~~g~~iiDSGT~~T~L~~~~y~~l~~al~~~~~~~~~~~~~~~~~~~~~Cy~~ 80 (161)
T PF14541_consen 1 FYYVNLTGISVGGKRLPIPPSVFQLSDGSGGTIIDSGTTYTYLPPPVYDALVQALDAQMGAPGVSREAPPFSGFDLCYNL 80 (161)
T ss_dssp SEEEEEEEEEETTEEE---TTCSCETTSTCSEEE-SSSSSEEEEHHHHHHHHHHHHHHHHTCT--CEE---TT-S-EEEG
T ss_pred CccEEEEEEEECCEEecCChHHhhccCCCCCEEEECCCCccCCcHHHHHHHHHHHHHHhhhcccccccccCCCCCceeec
Confidence 58999999999999987653 5799999999999999999999999999988653322 2234566789997
Q ss_pred ccCCccccccccccceEEEEEecCCCCeEEEEcCCeEEEEeCCCeEEEEEEeCCcCCCCCeeEEccccc
Q 016916 310 RRPFKNVHDVKKCFRTLALSFTDGKTRTLFELTPEAYLIISNKGNVCLGILNGAEVGLQDLNVIGGIGD 378 (380)
Q Consensus 310 ~~~~~~~~~~~~~~P~l~f~f~g~~~~~~~~l~~~~y~~~~~~~~~C~~~~~~~~~~~~~~~IlG~~~~ 378 (380)
.... .......+|+|+|+|.| |++++|++++|++...++..|+++..+. .+....+|||+.|+
T Consensus 81 ~~~~--~~~~~~~~P~i~l~F~~---ga~l~l~~~~y~~~~~~~~~Cla~~~~~-~~~~~~~viG~~~~ 143 (161)
T PF14541_consen 81 SSFG--VNRDWAKFPTITLHFEG---GADLTLPPENYFVQVSPGVFCLAFVPSD-ADDDGVSVIGNFQQ 143 (161)
T ss_dssp GCS---EETTEESS--EEEEETT---SEEEEE-HHHHEEEECTTEEEESEEEET-STTSSSEEE-HHHC
T ss_pred cccc--cccccccCCeEEEEEeC---CcceeeeccceeeeccCCCEEEEEEccC-CCCCCcEEECHHHh
Confidence 6410 11234689999999998 7999999999999988889999999871 12356899999886
No 27
>cd05483 retropepsin_like_bacteria Bacterial aspartate proteases, retropepsin-like protease family. This family of bacteria aspartate proteases is a subfamily of retropepsin-like protease family, which includes enzymes from retrovirus and retrotransposons. While fungal and mammalian pepsin-like aspartate proteases are bilobal proteins with structurally related N- and C-termini, this family of bacteria aspartate proteases is half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate proteases is classified by MEROPS as the peptidase family A2 (retropepsin family, clan AA), subfamily A2A.
Probab=97.89 E-value=4.3e-05 Score=59.11 Aligned_cols=93 Identities=17% Similarity=0.140 Sum_probs=62.7
Q ss_pred eEEEEEEecCCCcEEEEEEEcCCCceEEeCCCCCCCCCCCCCCCCCCCCCCCCCCCccccCcCCCCCCCCCCCCCCceeE
Q 016916 50 YYNVTMYIGQPARPYFLDLDTGSDLTWLQCDAPCVRCVEAPHPLYRPSNDLVPCEDPICASLHAPGHHNCEDPAQCDYEL 129 (380)
Q Consensus 50 ~y~~~i~vGtP~Q~~~v~~DTGSs~~wv~~~~~c~~C~~~~~~~f~p~~S~~~c~~~~c~~~~~~~~~~c~~~~~~~~~i 129 (380)
.|++++.++ .+++++++|||++.+|+... ....+.. .. .......+
T Consensus 2 ~~~v~v~i~--~~~~~~llDTGa~~s~i~~~-~~~~l~~----~~---------------------------~~~~~~~~ 47 (96)
T cd05483 2 HFVVPVTIN--GQPVRFLLDTGASTTVISEE-LAERLGL----PL---------------------------TLGGKVTV 47 (96)
T ss_pred cEEEEEEEC--CEEEEEEEECCCCcEEcCHH-HHHHcCC----Cc---------------------------cCCCcEEE
Confidence 589999999 79999999999999999754 1111110 00 01225567
Q ss_pred EeCCCCeEEEEEEEEEEEEeecCCCcCCCceEEeeeEecCCCCCCCCcceEEeeCC
Q 016916 130 EYADGGSSLGVLVKDAFAFNYTNGQRLNPRLALGCGYNQVPGASYHPLDGILGLGK 185 (380)
Q Consensus 130 ~Y~~Gs~~~G~l~~D~v~l~~~~g~~~~~~~~FG~~~~~~~~~~~~~~~GIlGLg~ 185 (380)
..++|.........+.++++ .....++.+........ ..+||||+.+
T Consensus 48 ~~~~G~~~~~~~~~~~i~ig----~~~~~~~~~~v~d~~~~-----~~~gIlG~d~ 94 (96)
T cd05483 48 QTANGRVRAARVRLDSLQIG----GITLRNVPAVVLPGDAL-----GVDGLLGMDF 94 (96)
T ss_pred EecCCCccceEEEcceEEEC----CcEEeccEEEEeCCccc-----CCceEeChHH
Confidence 77888666666668889995 45556666665544311 5899999864
No 28
>TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family. This family consists of predicted aspartic proteases, typically from 180 to 230 amino acids in length, in MEROPS clan AA. This model describes the well-conserved 121-residue C-terminal region. The poorly conserved, variable length N-terminal region usually contains a predicted transmembrane helix. Sequences in the seed alignment and those scoring above the trusted cutoff are Proteobacterial; homologs scroing between trusted and noise are found in Pyrobaculum aerophilum str. IM2 (archaeal), Pirellula sp. (Planctomycetes), and Nostoc sp. PCC 7120 (Cyanobacteria).
Probab=96.22 E-value=0.044 Score=44.63 Aligned_cols=102 Identities=15% Similarity=0.108 Sum_probs=62.8
Q ss_pred EEEecCCCCCeeEEEEEEecCCCcEEEEEEEcCCCceEEeCCCCCCCCCCCCCCCCCCCCCCCCCCCccccCcCCCCCCC
Q 016916 39 FQVHGNVYPTGYYNVTMYIGQPARPYFLDLDTGSDLTWLQCDAPCVRCVEAPHPLYRPSNDLVPCEDPICASLHAPGHHN 118 (380)
Q Consensus 39 lpl~~~~~~~~~y~~~i~vGtP~Q~~~v~~DTGSs~~wv~~~~~c~~C~~~~~~~f~p~~S~~~c~~~~c~~~~~~~~~~ 118 (380)
+++..+ .++.|++++.|. .+++.+++|||++.+-++.. --.... .++..
T Consensus 2 ~~i~~~--~~g~~~v~~~In--G~~~~flVDTGAs~t~is~~-~A~~Lg------l~~~~-------------------- 50 (121)
T TIGR02281 2 VQLAKD--GDGHFYATGRVN--GRNVRFLVDTGATSVALNEE-DAQRLG------LDLNR-------------------- 50 (121)
T ss_pred EEEEEc--CCCeEEEEEEEC--CEEEEEEEECCCCcEEcCHH-HHHHcC------CCccc--------------------
Confidence 345544 477899999998 68999999999999988653 111000 11100
Q ss_pred CCCCCCCceeEEeCCCCeEEEEEEEEEEEEeecCCCcCCCceEEeeeEecCCCCCCCCcceEEeeCC
Q 016916 119 CEDPAQCDYELEYADGGSSLGVLVKDAFAFNYTNGQRLNPRLALGCGYNQVPGASYHPLDGILGLGK 185 (380)
Q Consensus 119 c~~~~~~~~~i~Y~~Gs~~~G~l~~D~v~l~~~~g~~~~~~~~FG~~~~~~~~~~~~~~~GIlGLg~ 185 (380)
......+.=+.|........-|.+.++ .....|+.+.++... ...+|+||+.+
T Consensus 51 ----~~~~~~~~ta~G~~~~~~~~l~~l~iG----~~~~~nv~~~v~~~~------~~~~~LLGm~f 103 (121)
T TIGR02281 51 ----LGYTVTVSTANGQIKAARVTLDRVAIG----GIVVNDVDAMVAEGG------ALSESLLGMSF 103 (121)
T ss_pred ----CCceEEEEeCCCcEEEEEEEeCEEEEC----CEEEeCcEEEEeCCC------cCCceEcCHHH
Confidence 011334444567444445578889994 566777776655332 11379999764
No 29
>PF13650 Asp_protease_2: Aspartyl protease
Probab=95.05 E-value=0.19 Score=37.74 Aligned_cols=88 Identities=16% Similarity=0.205 Sum_probs=50.3
Q ss_pred EEEecCCCcEEEEEEEcCCCceEEeCCCCCCCCCCCCCCCCCCCCCCCCCCCccccCcCCCCCCCCCCCCCCceeEEeCC
Q 016916 54 TMYIGQPARPYFLDLDTGSDLTWLQCDAPCVRCVEAPHPLYRPSNDLVPCEDPICASLHAPGHHNCEDPAQCDYELEYAD 133 (380)
Q Consensus 54 ~i~vGtP~Q~~~v~~DTGSs~~wv~~~~~c~~C~~~~~~~f~p~~S~~~c~~~~c~~~~~~~~~~c~~~~~~~~~i~Y~~ 133 (380)
++.|+ .+++.+++|||++.+.+... -+.... ..+.. ......+.-.+
T Consensus 2 ~v~vn--g~~~~~liDTGa~~~~i~~~-~~~~l~------~~~~~------------------------~~~~~~~~~~~ 48 (90)
T PF13650_consen 2 PVKVN--GKPVRFLIDTGASISVISRS-LAKKLG------LKPRP------------------------KSVPISVSGAG 48 (90)
T ss_pred EEEEC--CEEEEEEEcCCCCcEEECHH-HHHHcC------CCCcC------------------------CceeEEEEeCC
Confidence 56677 68999999999998888644 111110 00000 01123444455
Q ss_pred CCeEEEEEEEEEEEEeecCCCcCCCceEEeeeEecCCCCCCCCcceEEeeC
Q 016916 134 GGSSLGVLVKDAFAFNYTNGQRLNPRLALGCGYNQVPGASYHPLDGILGLG 184 (380)
Q Consensus 134 Gs~~~G~l~~D~v~l~~~~g~~~~~~~~FG~~~~~~~~~~~~~~~GIlGLg 184 (380)
|........-+.++++ .....++.|-.... ....+||||+-
T Consensus 49 g~~~~~~~~~~~i~ig----~~~~~~~~~~v~~~------~~~~~~iLG~d 89 (90)
T PF13650_consen 49 GSVTVYRGRVDSITIG----GITLKNVPFLVVDL------GDPIDGILGMD 89 (90)
T ss_pred CCEEEEEEEEEEEEEC----CEEEEeEEEEEECC------CCCCEEEeCCc
Confidence 6444455566688884 44455565544431 24579999974
No 30
>cd05479 RP_DDI RP_DDI; retropepsin-like domain of DNA damage inducible protein. The family represents the retropepsin-like domain of DNA damage inducible protein. DNA damage inducible protein has a retropepsin-like domain and an amino-terminal ubiquitin-like domain and/or a UBA (ubiquitin-associated) domain. This CD represents the retropepsin-like domain of DDI.
Probab=93.45 E-value=0.65 Score=37.84 Aligned_cols=31 Identities=16% Similarity=0.214 Sum_probs=27.1
Q ss_pred CeeEEEEEEecCCCcEEEEEEEcCCCceEEeCC
Q 016916 48 TGYYNVTMYIGQPARPYFLDLDTGSDLTWLQCD 80 (380)
Q Consensus 48 ~~~y~~~i~vGtP~Q~~~v~~DTGSs~~wv~~~ 80 (380)
...+++++.|+ ++++.+++|||++..++...
T Consensus 14 ~~~~~v~~~In--g~~~~~LvDTGAs~s~Is~~ 44 (124)
T cd05479 14 VPMLYINVEIN--GVPVKAFVDSGAQMTIMSKA 44 (124)
T ss_pred eeEEEEEEEEC--CEEEEEEEeCCCceEEeCHH
Confidence 45789999999 78999999999999999754
No 31
>cd05484 retropepsin_like_LTR_2 Retropepsins_like_LTR, pepsin-like aspartate proteases. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate peptidases is classif
Probab=91.52 E-value=0.22 Score=38.06 Aligned_cols=28 Identities=32% Similarity=0.523 Sum_probs=25.0
Q ss_pred EEEEEEecCCCcEEEEEEEcCCCceEEeCC
Q 016916 51 YNVTMYIGQPARPYFLDLDTGSDLTWLQCD 80 (380)
Q Consensus 51 y~~~i~vGtP~Q~~~v~~DTGSs~~wv~~~ 80 (380)
|++++.|+ .+++.+.+||||+..++...
T Consensus 1 ~~~~~~In--g~~i~~lvDTGA~~svis~~ 28 (91)
T cd05484 1 KTVTLLVN--GKPLKFQLDTGSAITVISEK 28 (91)
T ss_pred CEEEEEEC--CEEEEEEEcCCcceEEeCHH
Confidence 57889998 79999999999999999754
No 32
>PF13975 gag-asp_proteas: gag-polyprotein putative aspartyl protease
Probab=85.84 E-value=1.5 Score=32.02 Aligned_cols=31 Identities=23% Similarity=0.292 Sum_probs=27.7
Q ss_pred CeeEEEEEEecCCCcEEEEEEEcCCCceEEeCC
Q 016916 48 TGYYNVTMYIGQPARPYFLDLDTGSDLTWLQCD 80 (380)
Q Consensus 48 ~~~y~~~i~vGtP~Q~~~v~~DTGSs~~wv~~~ 80 (380)
.+.+++++.|| ++.+.+++||||+...|+..
T Consensus 6 ~g~~~v~~~I~--g~~~~alvDtGat~~fis~~ 36 (72)
T PF13975_consen 6 PGLMYVPVSIG--GVQVKALVDTGATHNFISES 36 (72)
T ss_pred CCEEEEEEEEC--CEEEEEEEeCCCcceecCHH
Confidence 56899999999 69999999999999988755
No 33
>TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family. This family consists of predicted aspartic proteases, typically from 180 to 230 amino acids in length, in MEROPS clan AA. This model describes the well-conserved 121-residue C-terminal region. The poorly conserved, variable length N-terminal region usually contains a predicted transmembrane helix. Sequences in the seed alignment and those scoring above the trusted cutoff are Proteobacterial; homologs scroing between trusted and noise are found in Pyrobaculum aerophilum str. IM2 (archaeal), Pirellula sp. (Planctomycetes), and Nostoc sp. PCC 7120 (Cyanobacteria).
Probab=85.80 E-value=2 Score=34.79 Aligned_cols=40 Identities=20% Similarity=0.213 Sum_probs=28.8
Q ss_pred ccCCCCCeeEEeeEEEECCEEeeeCCCCEEEcccccceeeCHHHHHHH
Q 016916 234 SSDYTKYYSPGVAELFFGGETTGLKNLPVVFDSGSSYTYLNRVTYQTL 281 (380)
Q Consensus 234 ~~~~~~~w~v~l~~i~vg~~~~~~~~~~aiiDSGTs~~~lp~~~~~~l 281 (380)
.....++|.+ .+.++|+.+ .+++|||++.+.+++++.+++
T Consensus 5 ~~~~~g~~~v---~~~InG~~~-----~flVDTGAs~t~is~~~A~~L 44 (121)
T TIGR02281 5 AKDGDGHFYA---TGRVNGRNV-----RFLVDTGATSVALNEEDAQRL 44 (121)
T ss_pred EEcCCCeEEE---EEEECCEEE-----EEEEECCCCcEEcCHHHHHHc
Confidence 3333355544 466788754 589999999999999988754
No 34
>PF13650 Asp_protease_2: Aspartyl protease
Probab=82.23 E-value=2.3 Score=31.67 Aligned_cols=30 Identities=20% Similarity=0.376 Sum_probs=24.0
Q ss_pred EEEECCEEeeeCCCCEEEcccccceeeCHHHHHHH
Q 016916 247 ELFFGGETTGLKNLPVVFDSGSSYTYLNRVTYQTL 281 (380)
Q Consensus 247 ~i~vg~~~~~~~~~~aiiDSGTs~~~lp~~~~~~l 281 (380)
.++++++.+ .+++|||++.+.+.+++++++
T Consensus 2 ~v~vng~~~-----~~liDTGa~~~~i~~~~~~~l 31 (90)
T PF13650_consen 2 PVKVNGKPV-----RFLIDTGASISVISRSLAKKL 31 (90)
T ss_pred EEEECCEEE-----EEEEcCCCCcEEECHHHHHHc
Confidence 356777654 589999999999999988754
No 35
>PF00077 RVP: Retroviral aspartyl protease The Prosite entry also includes Pfam:PF00026; InterPro: IPR018061 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to the MEROPS peptidase family A2 (retropepsin family, clan AA), subfamily A2A. The family includes the single domain aspartic proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). Retroviral aspartyl protease is synthesised as part of the POL polyprotein that contains; an aspartyl protease, a reverse transcriptase, RNase H and integrase. POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins.; PDB: 3D3T_B 3SQF_A 1NSO_A 2HB3_A 2HS2_A 2HS1_B 3K4V_A 3GGV_C 1HTG_B 2FDE_A ....
Probab=79.32 E-value=3.1 Score=32.07 Aligned_cols=27 Identities=26% Similarity=0.336 Sum_probs=22.4
Q ss_pred EEEEEecCCCcEEEEEEEcCCCceEEeCC
Q 016916 52 NVTMYIGQPARPYFLDLDTGSDLTWLQCD 80 (380)
Q Consensus 52 ~~~i~vGtP~Q~~~v~~DTGSs~~wv~~~ 80 (380)
+.+|.+. .+++.+++||||+.+-++..
T Consensus 7 ~i~v~i~--g~~i~~LlDTGA~vsiI~~~ 33 (100)
T PF00077_consen 7 YITVKIN--GKKIKALLDTGADVSIISEK 33 (100)
T ss_dssp EEEEEET--TEEEEEEEETTBSSEEESSG
T ss_pred eEEEeEC--CEEEEEEEecCCCcceeccc
Confidence 4567777 68999999999999988755
No 36
>PF13975 gag-asp_proteas: gag-polyprotein putative aspartyl protease
Probab=78.14 E-value=4.3 Score=29.48 Aligned_cols=30 Identities=17% Similarity=0.395 Sum_probs=24.7
Q ss_pred EEEECCEEeeeCCCCEEEcccccceeeCHHHHHHH
Q 016916 247 ELFFGGETTGLKNLPVVFDSGSSYTYLNRVTYQTL 281 (380)
Q Consensus 247 ~i~vg~~~~~~~~~~aiiDSGTs~~~lp~~~~~~l 281 (380)
.+.++++.+. +++|||.+-.+++.+..+.+
T Consensus 12 ~~~I~g~~~~-----alvDtGat~~fis~~~a~rL 41 (72)
T PF13975_consen 12 PVSIGGVQVK-----ALVDTGATHNFISESLAKRL 41 (72)
T ss_pred EEEECCEEEE-----EEEeCCCcceecCHHHHHHh
Confidence 5667776654 89999999999999988855
No 37
>cd05484 retropepsin_like_LTR_2 Retropepsins_like_LTR, pepsin-like aspartate proteases. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate peptidases is classif
Probab=77.74 E-value=4.1 Score=30.90 Aligned_cols=30 Identities=27% Similarity=0.489 Sum_probs=25.1
Q ss_pred EEEECCEEeeeCCCCEEEcccccceeeCHHHHHHH
Q 016916 247 ELFFGGETTGLKNLPVVFDSGSSYTYLNRVTYQTL 281 (380)
Q Consensus 247 ~i~vg~~~~~~~~~~aiiDSGTs~~~lp~~~~~~l 281 (380)
.+.++|+.+. +.+|||++.+.++.+.+..+
T Consensus 4 ~~~Ing~~i~-----~lvDTGA~~svis~~~~~~l 33 (91)
T cd05484 4 TLLVNGKPLK-----FQLDTGSAITVISEKTWRKL 33 (91)
T ss_pred EEEECCEEEE-----EEEcCCcceEEeCHHHHHHh
Confidence 4677888764 89999999999999988754
No 38
>COG3577 Predicted aspartyl protease [General function prediction only]
Probab=76.20 E-value=15 Score=32.49 Aligned_cols=81 Identities=10% Similarity=0.070 Sum_probs=55.7
Q ss_pred CCeEEEEEecCCCCCeeEEEEEEecCCCcEEEEEEEcCCCceEEeCCCCCCCCCCCCCCCCCCCCCCCCCCCccccCcCC
Q 016916 34 GSSLLFQVHGNVYPTGYYNVTMYIGQPARPYFLDLDTGSDLTWLQCDAPCVRCVEAPHPLYRPSNDLVPCEDPICASLHA 113 (380)
Q Consensus 34 ~~~~~lpl~~~~~~~~~y~~~i~vGtP~Q~~~v~~DTGSs~~wv~~~~~c~~C~~~~~~~f~p~~S~~~c~~~~c~~~~~ 113 (380)
.....+-|+.+ .+|.|.++..|- .|++..++|||-+.+-+..+ ... .--++++.
T Consensus 91 ~g~~~v~Lak~--~~GHF~a~~~VN--Gk~v~fLVDTGATsVal~~~-dA~------RlGid~~~--------------- 144 (215)
T COG3577 91 DGYQEVSLAKS--RDGHFEANGRVN--GKKVDFLVDTGATSVALNEE-DAR------RLGIDLNS--------------- 144 (215)
T ss_pred CCceEEEEEec--CCCcEEEEEEEC--CEEEEEEEecCcceeecCHH-HHH------HhCCCccc---------------
Confidence 34446666655 478899999998 89999999999999888654 211 11244322
Q ss_pred CCCCCCCCCCCCceeEEeCCCCeEEEEEEEEEEEEe
Q 016916 114 PGHHNCEDPAQCDYELEYADGGSSLGVLVKDAFAFN 149 (380)
Q Consensus 114 ~~~~~c~~~~~~~~~i~Y~~Gs~~~G~l~~D~v~l~ 149 (380)
...++.+.-++|..-....-.|.|.|+
T Consensus 145 ---------l~y~~~v~TANG~~~AA~V~Ld~v~IG 171 (215)
T COG3577 145 ---------LDYTITVSTANGRARAAPVTLDRVQIG 171 (215)
T ss_pred ---------cCCceEEEccCCccccceEEeeeEEEc
Confidence 123566667888555566778999995
No 39
>cd05483 retropepsin_like_bacteria Bacterial aspartate proteases, retropepsin-like protease family. This family of bacteria aspartate proteases is a subfamily of retropepsin-like protease family, which includes enzymes from retrovirus and retrotransposons. While fungal and mammalian pepsin-like aspartate proteases are bilobal proteins with structurally related N- and C-termini, this family of bacteria aspartate proteases is half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate proteases is classified by MEROPS as the peptidase family A2 (retropepsin family, clan AA), subfamily A2A.
Probab=73.87 E-value=6.7 Score=29.45 Aligned_cols=31 Identities=19% Similarity=0.343 Sum_probs=24.0
Q ss_pred eEEEECCEEeeeCCCCEEEcccccceeeCHHHHHHH
Q 016916 246 AELFFGGETTGLKNLPVVFDSGSSYTYLNRVTYQTL 281 (380)
Q Consensus 246 ~~i~vg~~~~~~~~~~aiiDSGTs~~~lp~~~~~~l 281 (380)
..+.++++.+ .+++|||++.+.++.+..+.+
T Consensus 5 v~v~i~~~~~-----~~llDTGa~~s~i~~~~~~~l 35 (96)
T cd05483 5 VPVTINGQPV-----RFLLDTGASTTVISEELAERL 35 (96)
T ss_pred EEEEECCEEE-----EEEEECCCCcEEcCHHHHHHc
Confidence 3566776654 489999999999999877654
No 40
>cd06095 RP_RTVL_H_like Retropepsin of the RTVL_H family of human endogenous retrovirus-like elements. This family includes aspartate proteases from retroelements with LTR (long terminal repeats) including the RTVL_H family of human endogenous retrovirus-like elements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where
Probab=67.78 E-value=6.9 Score=29.41 Aligned_cols=25 Identities=28% Similarity=0.440 Sum_probs=20.5
Q ss_pred EEEecCCCcEEEEEEEcCCCceEEeCC
Q 016916 54 TMYIGQPARPYFLDLDTGSDLTWLQCD 80 (380)
Q Consensus 54 ~i~vGtP~Q~~~v~~DTGSs~~wv~~~ 80 (380)
.+.|. .+++++++|||++.+-+...
T Consensus 2 ~v~In--G~~~~fLvDTGA~~tii~~~ 26 (86)
T cd06095 2 TITVE--GVPIVFLVDTGATHSVLKSD 26 (86)
T ss_pred EEEEC--CEEEEEEEECCCCeEEECHH
Confidence 34555 68999999999999999765
No 41
>cd06095 RP_RTVL_H_like Retropepsin of the RTVL_H family of human endogenous retrovirus-like elements. This family includes aspartate proteases from retroelements with LTR (long terminal repeats) including the RTVL_H family of human endogenous retrovirus-like elements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where
Probab=66.26 E-value=9.1 Score=28.75 Aligned_cols=29 Identities=14% Similarity=0.130 Sum_probs=23.9
Q ss_pred EEECCEEeeeCCCCEEEcccccceeeCHHHHHHH
Q 016916 248 LFFGGETTGLKNLPVVFDSGSSYTYLNRVTYQTL 281 (380)
Q Consensus 248 i~vg~~~~~~~~~~aiiDSGTs~~~lp~~~~~~l 281 (380)
+.++|+.+. +++|||.+.+.+++...+.+
T Consensus 3 v~InG~~~~-----fLvDTGA~~tii~~~~a~~~ 31 (86)
T cd06095 3 ITVEGVPIV-----FLVDTGATHSVLKSDLGPKQ 31 (86)
T ss_pred EEECCEEEE-----EEEECCCCeEEECHHHhhhc
Confidence 566777654 79999999999999988764
No 42
>PF12384 Peptidase_A2B: Ty3 transposon peptidase; InterPro: IPR024650 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Ty3 is a gypsy-type, retrovirus-like, element found in the budding yeast. The Ty3 aspartyl protease is required for processing of the viral polyprotein into its mature species [].
Probab=65.53 E-value=8.4 Score=32.86 Aligned_cols=31 Identities=16% Similarity=0.269 Sum_probs=25.3
Q ss_pred eEEEEEEecCCCcEEEEEEEcCCCceEEeCC
Q 016916 50 YYNVTMYIGQPARPYFLDLDTGSDLTWLQCD 80 (380)
Q Consensus 50 ~y~~~i~vGtP~Q~~~v~~DTGSs~~wv~~~ 80 (380)
.=..++.++.-..++.++|||||+..++...
T Consensus 32 g~T~~v~l~~~~t~i~vLfDSGSPTSfIr~d 62 (177)
T PF12384_consen 32 GKTAIVQLNCKGTPIKVLFDSGSPTSFIRSD 62 (177)
T ss_pred CcEEEEEEeecCcEEEEEEeCCCccceeehh
Confidence 3456667777789999999999999999765
No 43
>cd05482 HIV_retropepsin_like Retropepsins, pepsin-like aspartate proteases. This is a subfamily of retropepsins. The family includes pepsin-like aspartate proteases from retroviruses, retrotransposons and retroelements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This gro
Probab=63.54 E-value=10 Score=28.85 Aligned_cols=25 Identities=32% Similarity=0.509 Sum_probs=20.9
Q ss_pred EEEecCCCcEEEEEEEcCCCceEEeCC
Q 016916 54 TMYIGQPARPYFLDLDTGSDLTWLQCD 80 (380)
Q Consensus 54 ~i~vGtP~Q~~~v~~DTGSs~~wv~~~ 80 (380)
.+.++ .|.+.+++|||+.++-+...
T Consensus 2 ~~~i~--g~~~~~llDTGAd~Tvi~~~ 26 (87)
T cd05482 2 TLYIN--GKLFEGLLDTGADVSIIAEN 26 (87)
T ss_pred EEEEC--CEEEEEEEccCCCCeEEccc
Confidence 45666 79999999999999999754
No 44
>cd05479 RP_DDI RP_DDI; retropepsin-like domain of DNA damage inducible protein. The family represents the retropepsin-like domain of DNA damage inducible protein. DNA damage inducible protein has a retropepsin-like domain and an amino-terminal ubiquitin-like domain and/or a UBA (ubiquitin-associated) domain. This CD represents the retropepsin-like domain of DDI.
Probab=62.96 E-value=12 Score=30.34 Aligned_cols=29 Identities=17% Similarity=0.308 Sum_probs=23.2
Q ss_pred EEEECCEEeeeCCCCEEEcccccceeeCHHHHHH
Q 016916 247 ELFFGGETTGLKNLPVVFDSGSSYTYLNRVTYQT 280 (380)
Q Consensus 247 ~i~vg~~~~~~~~~~aiiDSGTs~~~lp~~~~~~ 280 (380)
.+.++++.+ .+++|||++.+.++++..++
T Consensus 20 ~~~Ing~~~-----~~LvDTGAs~s~Is~~~a~~ 48 (124)
T cd05479 20 NVEINGVPV-----KAFVDSGAQMTIMSKACAEK 48 (124)
T ss_pred EEEECCEEE-----EEEEeCCCceEEeCHHHHHH
Confidence 455666654 48999999999999998775
No 45
>PF00077 RVP: Retroviral aspartyl protease The Prosite entry also includes Pfam:PF00026; InterPro: IPR018061 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to the MEROPS peptidase family A2 (retropepsin family, clan AA), subfamily A2A. The family includes the single domain aspartic proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). Retroviral aspartyl protease is synthesised as part of the POL polyprotein that contains; an aspartyl protease, a reverse transcriptase, RNase H and integrase. POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins.; PDB: 3D3T_B 3SQF_A 1NSO_A 2HB3_A 2HS2_A 2HS1_B 3K4V_A 3GGV_C 1HTG_B 2FDE_A ....
Probab=61.76 E-value=8.6 Score=29.47 Aligned_cols=28 Identities=11% Similarity=0.355 Sum_probs=22.2
Q ss_pred eEEEECCEEeeeCCCCEEEcccccceeeCHHHH
Q 016916 246 AELFFGGETTGLKNLPVVFDSGSSYTYLNRVTY 278 (380)
Q Consensus 246 ~~i~vg~~~~~~~~~~aiiDSGTs~~~lp~~~~ 278 (380)
..|.++++.+. +++|||+..+.++...+
T Consensus 8 i~v~i~g~~i~-----~LlDTGA~vsiI~~~~~ 35 (100)
T PF00077_consen 8 ITVKINGKKIK-----ALLDTGADVSIISEKDW 35 (100)
T ss_dssp EEEEETTEEEE-----EEEETTBSSEEESSGGS
T ss_pred EEEeECCEEEE-----EEEecCCCcceeccccc
Confidence 45777777654 89999999999997644
No 46
>TIGR03698 clan_AA_DTGF clan AA aspartic protease, AF_0612 family. Members of this protein family are clan AA aspartic proteases, related to family TIGR02281. These proteins resemble retropepsins, pepsin-like proteases of retroviruses such as HIV. Members of this family are found in archaea and bacteria.
Probab=53.35 E-value=9.9 Score=30.01 Aligned_cols=21 Identities=14% Similarity=0.083 Sum_probs=17.8
Q ss_pred CCEEEccccccee-eCHHHHHH
Q 016916 260 LPVVFDSGSSYTY-LNRVTYQT 280 (380)
Q Consensus 260 ~~aiiDSGTs~~~-lp~~~~~~ 280 (380)
-.+++|||.+... +|.+++++
T Consensus 17 v~~LVDTGat~~~~l~~~~a~~ 38 (107)
T TIGR03698 17 VRALVDTGFSGFLLVPPDIVNK 38 (107)
T ss_pred EEEEEECCCCeEEecCHHHHHH
Confidence 4689999999886 99998874
No 47
>cd05481 retropepsin_like_LTR_1 Retropepsins_like_LTR; pepsin-like aspartate protease from retrotransposons with long terminal repeats. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N and C-terminals, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identifi
Probab=51.62 E-value=18 Score=27.77 Aligned_cols=23 Identities=22% Similarity=0.306 Sum_probs=19.3
Q ss_pred CCEEEcccccceeeCHHHHHHHH
Q 016916 260 LPVVFDSGSSYTYLNRVTYQTLT 282 (380)
Q Consensus 260 ~~aiiDSGTs~~~lp~~~~~~l~ 282 (380)
..+.+|||++...+|...|..+.
T Consensus 11 v~~~vDtGA~vnllp~~~~~~l~ 33 (93)
T cd05481 11 VKFQLDTGATCNVLPLRWLKSLT 33 (93)
T ss_pred EEEEEecCCEEEeccHHHHhhhc
Confidence 35899999999999999887543
No 48
>COG5550 Predicted aspartyl protease [Posttranslational modification, protein turnover, chaperones]
Probab=51.62 E-value=10 Score=30.66 Aligned_cols=20 Identities=25% Similarity=0.370 Sum_probs=17.6
Q ss_pred EEEccccc-ceeeCHHHHHHH
Q 016916 262 VVFDSGSS-YTYLNRVTYQTL 281 (380)
Q Consensus 262 aiiDSGTs-~~~lp~~~~~~l 281 (380)
.+||||.+ ++.+|+++++++
T Consensus 29 ~LiDTGFtg~lvlp~~vaek~ 49 (125)
T COG5550 29 ELIDTGFTGYLVLPPQVAEKL 49 (125)
T ss_pred eEEecCCceeEEeCHHHHHhc
Confidence 48999999 999999999853
No 49
>PF11925 DUF3443: Protein of unknown function (DUF3443); InterPro: IPR021847 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 400 to 434 amino acids in length. This protein has two conserved sequence motifs: NPV and DNNG.
Probab=48.65 E-value=66 Score=31.23 Aligned_cols=82 Identities=22% Similarity=0.321 Sum_probs=47.4
Q ss_pred CCCCceeeeeeeeccCCCCCCc-------ccccccCCC-eEEEEEecCCCCCeeEEEEEEecCCCcEEEE-EEEcCCCce
Q 016916 5 HNGENLCFPTVRMSSSSSSSSS-------SSLFNHVGS-SLLFQVHGNVYPTGYYNVTMYIGQPARPYFL-DLDTGSDLT 75 (380)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~-~~~lpl~~~~~~~~~y~~~i~vGtP~Q~~~v-~~DTGSs~~ 75 (380)
+||-.|.+|.+. ..+.++++= ++.+|.++. ...+++... -++....-| |.+.- .|||||.-.
T Consensus 197 NNGvii~lP~v~-~~Ga~SatG~LiFGIgTQsNN~l~~~~~~~~~~~~-----G~~tt~~~G---~t~~~sf~DSGSNg~ 267 (370)
T PF11925_consen 197 NNGVIIQLPAVS-ASGAASATGTLIFGIGTQSNNALPSGATVLTTDSN-----GDFTTTFNG---QTYSASFFDSGSNGY 267 (370)
T ss_pred CCeEEEecCCCC-CCCCccceEEEEEecCCcccCcccccceEEeecCC-----ceEEEEecC---ceeeeeeEecCCcee
Confidence 455566666665 222111111 255777777 666666533 245556667 46666 999999999
Q ss_pred EEeCCCCCCCCCCCCCCCCCC
Q 016916 76 WLQCDAPCVRCVEAPHPLYRP 96 (380)
Q Consensus 76 wv~~~~~c~~C~~~~~~~f~p 96 (380)
.++.. .-+.|.......|-|
T Consensus 268 fF~d~-~~p~c~~~~~~~YcP 287 (370)
T PF11925_consen 268 FFPDS-SIPTCGSSNSGFYCP 287 (370)
T ss_pred eccCC-CccccccCCCcccCC
Confidence 98854 344554333344544
No 50
>COG3577 Predicted aspartyl protease [General function prediction only]
Probab=45.57 E-value=59 Score=28.93 Aligned_cols=40 Identities=13% Similarity=0.214 Sum_probs=29.6
Q ss_pred cccCCCCCeeEEeeEEEECCEEeeeCCCCEEEcccccceeeCHHHHHH
Q 016916 233 MSSDYTKYYSPGVAELFFGGETTGLKNLPVVFDSGSSYTYLNRVTYQT 280 (380)
Q Consensus 233 l~~~~~~~w~v~l~~i~vg~~~~~~~~~~aiiDSGTs~~~lp~~~~~~ 280 (380)
+.+..++||.+ ...+||+.+. .++|||.|.+.++.+..+.
T Consensus 98 Lak~~~GHF~a---~~~VNGk~v~-----fLVDTGATsVal~~~dA~R 137 (215)
T COG3577 98 LAKSRDGHFEA---NGRVNGKKVD-----FLVDTGATSVALNEEDARR 137 (215)
T ss_pred EEecCCCcEEE---EEEECCEEEE-----EEEecCcceeecCHHHHHH
Confidence 33333366654 5678888876 7999999999999887763
No 51
>PF09668 Asp_protease: Aspartyl protease; InterPro: IPR019103 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This family of eukaryotic aspartyl proteases have a fold similar to retroviral proteases which implies they function proteolytically during regulated protein turnover []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 3S8I_A 2I1A_B.
Probab=45.37 E-value=31 Score=28.11 Aligned_cols=30 Identities=13% Similarity=0.212 Sum_probs=23.3
Q ss_pred eEEEECCEEeeeCCCCEEEcccccceeeCHHHHHH
Q 016916 246 AELFFGGETTGLKNLPVVFDSGSSYTYLNRVTYQT 280 (380)
Q Consensus 246 ~~i~vg~~~~~~~~~~aiiDSGTs~~~lp~~~~~~ 280 (380)
..++++|+.+. |.||||+..+.++.+..++
T Consensus 27 I~~~ing~~vk-----A~VDtGAQ~tims~~~a~r 56 (124)
T PF09668_consen 27 INCKINGVPVK-----AFVDTGAQSTIMSKSCAER 56 (124)
T ss_dssp EEEEETTEEEE-----EEEETT-SS-EEEHHHHHH
T ss_pred EEEEECCEEEE-----EEEeCCCCccccCHHHHHH
Confidence 35777888774 9999999999999998875
No 52
>PF09668 Asp_protease: Aspartyl protease; InterPro: IPR019103 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This family of eukaryotic aspartyl proteases have a fold similar to retroviral proteases which implies they function proteolytically during regulated protein turnover []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 3S8I_A 2I1A_B.
Probab=40.22 E-value=51 Score=26.88 Aligned_cols=36 Identities=22% Similarity=0.234 Sum_probs=25.3
Q ss_pred eeEEEEEEecCCCcEEEEEEEcCCCceEEeCCCCCCCCC
Q 016916 49 GYYNVTMYIGQPARPYFLDLDTGSDLTWLQCDAPCVRCV 87 (380)
Q Consensus 49 ~~y~~~i~vGtP~Q~~~v~~DTGSs~~wv~~~~~c~~C~ 87 (380)
..+|+++++. .+++++.+|||...+-+... -+..|.
T Consensus 23 ~mLyI~~~in--g~~vkA~VDtGAQ~tims~~-~a~r~g 58 (124)
T PF09668_consen 23 SMLYINCKIN--GVPVKAFVDTGAQSTIMSKS-CAERCG 58 (124)
T ss_dssp ---EEEEEET--TEEEEEEEETT-SS-EEEHH-HHHHTT
T ss_pred ceEEEEEEEC--CEEEEEEEeCCCCccccCHH-HHHHcC
Confidence 4689999999 79999999999999988754 234554
No 53
>cd05471 pepsin_like Pepsin-like aspartic proteases, bilobal enzymes that cleave bonds in peptides at acidic pH. Pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, renin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (renin, cathepsin D and E, pepsin) or commercially (chymosin) important. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residu
Probab=27.41 E-value=94 Score=28.29 Aligned_cols=45 Identities=24% Similarity=0.376 Sum_probs=30.4
Q ss_pred CCeEEEEEecCCCCCeeEEEE---EEecC-----CCcEEEEEEEcCCCceEEeCC
Q 016916 34 GSSLLFQVHGNVYPTGYYNVT---MYIGQ-----PARPYFLDLDTGSDLTWLQCD 80 (380)
Q Consensus 34 ~~~~~lpl~~~~~~~~~y~~~---i~vGt-----P~Q~~~v~~DTGSs~~wv~~~ 80 (380)
+...-.|+... ....|.+. |.+|. ......++||||++.+++|..
T Consensus 167 ~~~~~~p~~~~--~~~~~~v~l~~i~v~~~~~~~~~~~~~~iiDsGt~~~~lp~~ 219 (283)
T cd05471 167 GDLTYTPVVSN--GPGYWQVPLDGISVGGKSVISSSGGGGAIVDSGTSLIYLPSS 219 (283)
T ss_pred CceEEEecCCC--CCCEEEEEeCeEEECCceeeecCCCcEEEEecCCCCEeCCHH
Confidence 44556666643 13356554 56664 245789999999999999855
No 54
>TIGR03698 clan_AA_DTGF clan AA aspartic protease, AF_0612 family. Members of this protein family are clan AA aspartic proteases, related to family TIGR02281. These proteins resemble retropepsins, pepsin-like proteases of retroviruses such as HIV. Members of this family are found in archaea and bacteria.
Probab=26.08 E-value=89 Score=24.52 Aligned_cols=27 Identities=15% Similarity=0.084 Sum_probs=19.7
Q ss_pred EEEEecCCCc----EEEEEEEcCCCceE-EeC
Q 016916 53 VTMYIGQPAR----PYFLDLDTGSDLTW-LQC 79 (380)
Q Consensus 53 ~~i~vGtP~Q----~~~v~~DTGSs~~w-v~~ 79 (380)
+++.+..|.| ++.+++|||.+..- ++.
T Consensus 2 ~~v~~~~p~~~~~~~v~~LVDTGat~~~~l~~ 33 (107)
T TIGR03698 2 LDVELSNPKNPEFMEVRALVDTGFSGFLLVPP 33 (107)
T ss_pred EEEEEeCCCCCCceEEEEEEECCCCeEEecCH
Confidence 5677777733 67999999998664 543
No 55
>cd05476 pepsin_A_like_plant Chroloplast Nucleoids DNA-binding Protease and Nucellin, pepsin-like aspartic proteases from plants. This family contains pepsin like aspartic proteases from plants including Chloroplast Nucleoids DNA-binding Protease and Nucellin. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco and Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The enzymes specifically cleave bonds in peptides which
Probab=25.34 E-value=1.4e+02 Score=27.30 Aligned_cols=47 Identities=21% Similarity=0.250 Sum_probs=29.0
Q ss_pred CCeEEEEEecCCCCCeeEEEE---EEecCC-------------CcEEEEEEEcCCCceEEeCC
Q 016916 34 GSSLLFQVHGNVYPTGYYNVT---MYIGQP-------------ARPYFLDLDTGSDLTWLQCD 80 (380)
Q Consensus 34 ~~~~~lpl~~~~~~~~~y~~~---i~vGtP-------------~Q~~~v~~DTGSs~~wv~~~ 80 (380)
+...-.|+..+.-....|.++ |+||.- .....+++|||++.+.+|..
T Consensus 131 ~~l~~~p~~~~~~~~~~~~v~l~~i~v~~~~~~~~~~~~~~~~~~~~~ai~DTGTs~~~lp~~ 193 (265)
T cd05476 131 SGVVYTPLVKNPANPTYYYVNLEGISVGGKRLPIPPSVFAIDSDGSGGTIIDSGTTLTYLPDP 193 (265)
T ss_pred CCceEeecccCCCCCCceEeeeEEEEECCEEecCCchhcccccCCCCcEEEeCCCcceEcCcc
Confidence 445567776431012345544 677742 12356899999999999865
No 56
>cd05472 cnd41_like Chloroplast Nucleoids DNA-binding Protease, catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco. Antisense tobacco with reduced amount of CND41 maintained green leaves and constant protein levels, especially Rubisco. CND41 has DNA-binding as well as aspartic protease activities. The pepsin-like aspartic protease domain is located at the C-terminus of the protein. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. This fami
Probab=22.88 E-value=81 Score=29.41 Aligned_cols=47 Identities=17% Similarity=0.185 Sum_probs=28.4
Q ss_pred CCeEEEEEecCCCCCeeEEEE---EEecCCC--------cEEEEEEEcCCCceEEeCC
Q 016916 34 GSSLLFQVHGNVYPTGYYNVT---MYIGQPA--------RPYFLDLDTGSDLTWLQCD 80 (380)
Q Consensus 34 ~~~~~lpl~~~~~~~~~y~~~---i~vGtP~--------Q~~~v~~DTGSs~~wv~~~ 80 (380)
+...-+|+..+......|.++ |+||.-. ....+++|||++++++|..
T Consensus 131 g~l~~~pv~~~~~~~~~y~v~l~~i~vg~~~~~~~~~~~~~~~~ivDSGTt~~~lp~~ 188 (299)
T cd05472 131 AGASFTPMLSNPRVPTFYYVGLTGISVGGRRLPIPPASFGAGGVIIDSGTVITRLPPS 188 (299)
T ss_pred CCceECCCccCCCCCCeEEEeeEEEEECCEECCCCccccCCCCeEEeCCCcceecCHH
Confidence 344556665432112356655 5777421 2236899999999999853
No 57
>cd05475 nucellin_like Nucellins, plant aspartic proteases specifically expressed in nucellar cells during degradation. Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. This degradation is a characteristic of programmed cell death. Nucellins are plant aspartic proteases specifically expressed in nucellar cells during degradation. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region, and two other regions nearly identical to two regions of plant aspartic proteases. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. Although the three-dimensional structures of the two lobes are very similar, the amino acid sequences are more d
Probab=22.78 E-value=94 Score=28.66 Aligned_cols=43 Identities=12% Similarity=0.200 Sum_probs=27.0
Q ss_pred EEEEEecCCCCCeeEEEE---EEecC---CCcEEEEEEEcCCCceEEeCC
Q 016916 37 LLFQVHGNVYPTGYYNVT---MYIGQ---PARPYFLDLDTGSDLTWLQCD 80 (380)
Q Consensus 37 ~~lpl~~~~~~~~~y~~~---i~vGt---P~Q~~~v~~DTGSs~~wv~~~ 80 (380)
.-.|+..+. ....|.++ |+||. +.....+++|||++.+.+|..
T Consensus 146 ~ytpl~~~~-~~~~y~v~l~~i~vg~~~~~~~~~~~ivDTGTt~t~lp~~ 194 (273)
T cd05475 146 TWTPMRRES-QKKHYSPGPASLLFNGQPTGGKGLEVVFDSGSSYTYFNAQ 194 (273)
T ss_pred eecccccCC-CCCeEEEeEeEEEECCEECcCCCceEEEECCCceEEcCCc
Confidence 345555331 12356555 57773 223467999999999999865
No 58
>cd06098 phytepsin Phytepsin, a plant homolog of mammalian lysosomal pepsins. Phytepsin, a plant homolog of mammalian lysosomal pepsins, resides in grains, roots, stems, leaves and flowers. Phytepsin may participate in metabolic turnover and in protein processing events. In addition, it highly expressed in several plant tissues undergoing apoptosis. Phytepsin contains an internal region consisting of about 100 residues not present in animal or microbial pepsins. This region is thus called a plant specific insert. The insert is highly similar to saponins, which are lysosomal sphingolipid-activating proteins in mammalian cells. The saponin-like domain may have a role in the vacuolar targeting of phytepsin. Phytepsin, as its animal counterparts, possesses a topology typical of all aspartic proteases. They are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe has probably evolved fro
Probab=22.53 E-value=1.2e+02 Score=28.55 Aligned_cols=31 Identities=23% Similarity=0.247 Sum_probs=22.0
Q ss_pred eEEEE---EEecCC-----CcEEEEEEEcCCCceEEeCC
Q 016916 50 YYNVT---MYIGQP-----ARPYFLDLDTGSDLTWLQCD 80 (380)
Q Consensus 50 ~y~~~---i~vGtP-----~Q~~~v~~DTGSs~~wv~~~ 80 (380)
.|.++ |.||.. .+...+++|||++.+++|..
T Consensus 189 ~w~v~l~~i~v~g~~~~~~~~~~~aivDTGTs~~~lP~~ 227 (317)
T cd06098 189 YWQFEMGDVLIGGKSTGFCAGGCAAIADSGTSLLAGPTT 227 (317)
T ss_pred EEEEEeCeEEECCEEeeecCCCcEEEEecCCcceeCCHH
Confidence 56554 577742 23457999999999999854
No 59
>cd06096 Plasmepsin_5 Plasmepsins are a class of aspartic proteinases produced by the plasmodium parasite. The family contains a group of aspartic proteinases homologous to plasmepsin 5. Plasmepsins are a class of at least 10 enzymes produced by the plasmodium parasite. Through their haemoglobin-degrading activity, they are an important cause of symptoms in malaria sufferers. This family of enzymes is a potential target for anti-malarial drugs. Plasmepsins are aspartic acid proteases, which means their active site contains two aspartic acid residues. These two aspartic acid residue act respectively as proton donor and proton acceptor, catalyzing the hydrolysis of peptide bond in proteins. Aspartic proteinases are composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalytic Asp residues are contained in an Asp-Thr-Gly-Ser/thr motif in both N- and C-terminal l
Probab=21.25 E-value=1.3e+02 Score=28.61 Aligned_cols=31 Identities=26% Similarity=0.400 Sum_probs=22.4
Q ss_pred eEEEE---EEecCC------CcEEEEEEEcCCCceEEeCC
Q 016916 50 YYNVT---MYIGQP------ARPYFLDLDTGSDLTWLQCD 80 (380)
Q Consensus 50 ~y~~~---i~vGtP------~Q~~~v~~DTGSs~~wv~~~ 80 (380)
.|.++ |++|.. .....+++|||++++++|..
T Consensus 209 ~y~v~l~~i~vg~~~~~~~~~~~~~aivDSGTs~~~lp~~ 248 (326)
T cd06096 209 YYYVKLEGLSVYGTTSNSGNTKGLGMLVDSGSTLSHFPED 248 (326)
T ss_pred eEEEEEEEEEEcccccceecccCCCEEEeCCCCcccCCHH
Confidence 56555 577743 23556899999999999864
No 60
>cd06097 Aspergillopepsin_like Aspergillopepsin_like, aspartic proteases of fungal origin. The members of this family are aspartic proteases of fungal origin, including aspergillopepsin, rhizopuspepsin, endothiapepsin, and rodosporapepsin. The various fungal species in this family may be the most economically important genus of fungi. They may serve as virulence factors or as industrial aids. For example, Aspergillopepsin from A. fumigatus is involved in invasive aspergillosis owing to its elastolytic activity and Aspergillopepsins from the mold A. saitoi are used in fermentation industry. Aspartic proteinases are a group of proteolytic enzymes in which the scissile peptide bond is attacked by a nucleophilic water molecule activated by two aspartic residues in a DT(S)G motif at the active site. They have a similar fold composed of two beta-barrel domains. Between the N-terminal and C-terminal domains, each of which contributes one catalytic aspartic residue, there is an extended active-
Probab=20.54 E-value=1.3e+02 Score=27.80 Aligned_cols=43 Identities=21% Similarity=0.287 Sum_probs=27.7
Q ss_pred CeEEEEEecCCCCCeeEEEE---EEecCC----CcEEEEEEEcCCCceEEeCC
Q 016916 35 SSLLFQVHGNVYPTGYYNVT---MYIGQP----ARPYFLDLDTGSDLTWLQCD 80 (380)
Q Consensus 35 ~~~~lpl~~~~~~~~~y~~~---i~vGtP----~Q~~~v~~DTGSs~~wv~~~ 80 (380)
...-+|+..+ ...|.++ |.||.- .....++||||++.+++|..
T Consensus 166 ~l~~~pi~~~---~~~w~v~l~~i~v~~~~~~~~~~~~~iiDSGTs~~~lP~~ 215 (278)
T cd06097 166 EISWTPVDNS---SGFWQFTSTSYTVGGDAPWSRSGFSAIADTGTTLILLPDA 215 (278)
T ss_pred ceEEEEccCC---CcEEEEEEeeEEECCcceeecCCceEEeecCCchhcCCHH
Confidence 3445666532 2355544 466632 35678999999999999854
Done!