BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016918
(380 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|A8LM45|EFG_DINSH Elongation factor G OS=Dinoroseobacter shibae (strain DFL 12)
GN=fusA PE=3 SV=1
Length = 705
Score = 37.0 bits (84), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 39/78 (50%), Gaps = 5/78 (6%)
Query: 308 IESENRAAAESDDCGELELIFGEETTPSESSSSPVKEPVEV-AMTWKPP----AVKPKTV 362
+ S NR E G++ + G + T + + VKEPV + MT+ P AV+PKT
Sbjct: 372 MHSNNREEIEEAFAGDIIALAGLKDTTTGDTLCDVKEPVVLETMTFPDPVIEIAVEPKTK 431
Query: 363 EKRTKMVTGLASLLKEKP 380
+ KM GLA L E P
Sbjct: 432 NDQEKMSQGLARLAAEDP 449
>sp|Q1GK42|EFG_RUEST Elongation factor G OS=Ruegeria sp. (strain TM1040) GN=fusA PE=3
SV=1
Length = 706
Score = 34.7 bits (78), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 38/78 (48%), Gaps = 5/78 (6%)
Query: 308 IESENRAAAESDDCGELELIFGEETTPSESSSSPVKEPVEV-AMTWKPP----AVKPKTV 362
+ S NR E G++ + G + T + + KEPV + MT+ P AV+PKT
Sbjct: 373 MHSNNREEIEEAFAGDIIALAGLKDTTTGDTLCDAKEPVVLETMTFPDPVIEIAVEPKTK 432
Query: 363 EKRTKMVTGLASLLKEKP 380
+ KM GLA L E P
Sbjct: 433 GDQEKMSQGLARLAAEDP 450
>sp|B2UYA7|EFG_CLOBA Elongation factor G OS=Clostridium botulinum (strain Alaska E43 /
Type E3) GN=fusA PE=3 SV=1
Length = 688
Score = 33.1 bits (74), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 40/78 (51%), Gaps = 5/78 (6%)
Query: 308 IESENRAAAESDDCGELELIFGEETTPSESSSSPVKEPVEV-AMTWKPP----AVKPKTV 362
+ S +R ES + GEL + G + T + + K+P+ + +M + P A++PKT
Sbjct: 356 MHSNSRQEVESLEAGELGAVIGLKNTSTGDTLCSEKDPIILESMEFPEPVISVAIEPKTK 415
Query: 363 EKRTKMVTGLASLLKEKP 380
+ KM LA L +E P
Sbjct: 416 AAQEKMGMALAKLAEEDP 433
>sp|B2TIH2|EFG_CLOBB Elongation factor G OS=Clostridium botulinum (strain Eklund 17B /
Type B) GN=fusA PE=3 SV=1
Length = 688
Score = 33.1 bits (74), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 40/78 (51%), Gaps = 5/78 (6%)
Query: 308 IESENRAAAESDDCGELELIFGEETTPSESSSSPVKEPVEV-AMTWKPP----AVKPKTV 362
+ S +R ES + GEL + G + T + + K+P+ + +M + P A++PKT
Sbjct: 356 MHSNSRQEVESLEAGELGAVIGLKNTGTGDTLCSEKDPIILESMEFPEPVISVAIEPKTK 415
Query: 363 EKRTKMVTGLASLLKEKP 380
+ KM LA L +E P
Sbjct: 416 AAQEKMGMALAKLAEEDP 433
>sp|Q86YW9|MD12L_HUMAN Mediator of RNA polymerase II transcription subunit 12-like protein
OS=Homo sapiens GN=MED12L PE=1 SV=2
Length = 2145
Score = 33.1 bits (74), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 31/126 (24%), Positives = 52/126 (41%), Gaps = 7/126 (5%)
Query: 3 IQPIDVDSESQALKDPIIRPESTKP------VLKSRLKRLFDRQFPSVLRISSAERQPAV 56
+ P+ + ++Q L I P K + + +KR+ LR S E Q +
Sbjct: 1275 LDPVLSNMQAQKLLQLICYPHGIKECTEGDNLQRQHIKRILQNLEQWTLRQSWLELQLMI 1334
Query: 57 EYTTKDAGTGPEFEPSSVCLDKMVQNFIEEFNEKQSNAKCSRNRCNCFNGNGNDSSDDEF 116
+ KD G+G E +++ LD + + IE F + S + + FN N S+D
Sbjct: 1335 KQCLKDPGSGSVAEMNNL-LDNIAKATIEVFQQSADLNNSSNSGMSLFNPNSIGSADTSS 1393
Query: 117 DLINGF 122
NG
Sbjct: 1394 TRQNGI 1399
>sp|A6UT22|HEM1_META3 Glutamyl-tRNA reductase OS=Methanococcus aeolicus (strain Nankai-3
/ ATCC BAA-1280) GN=hemA PE=3 SV=1
Length = 383
Score = 32.7 bits (73), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 39/81 (48%), Gaps = 5/81 (6%)
Query: 181 LSSLGYDCSICKSKWDKCPSFPAGEYEYIDVIVKGETLLVDIDFRSEFEIARSTGAYKAI 240
L L +D K+D C I++ ++DI+ +EFE+ +S A K +
Sbjct: 16 LQKLRFDEDEFYKKYDNCVLVQTCNR--IEIYFDKNAKIIDINEFAEFEMIKSNNAIKHL 73
Query: 241 LQS---LPYIFVGKPERIGQI 258
L++ L + VG+ + IGQI
Sbjct: 74 LRTASGLNSMIVGEDQIIGQI 94
>sp|A6LPQ8|EFG_CLOB8 Elongation factor G OS=Clostridium beijerinckii (strain ATCC 51743
/ NCIMB 8052) GN=fusA PE=3 SV=1
Length = 688
Score = 32.7 bits (73), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 40/78 (51%), Gaps = 5/78 (6%)
Query: 308 IESENRAAAESDDCGELELIFGEETTPSESSSSPVKEPVEV-AMTWKPP----AVKPKTV 362
+ S +R+ ES + GE+ + G + T + + P+ + AM + P A++PKT
Sbjct: 356 MHSNSRSEVESLEAGEIGAVIGLKNTTTGDTLCAENSPIILEAMEFPEPVIRVAIEPKTK 415
Query: 363 EKRTKMVTGLASLLKEKP 380
+ + KM LA L +E P
Sbjct: 416 DAQEKMGMALAKLAEEDP 433
>sp|Q9A7N9|KGUA_CAUCR Guanylate kinase OS=Caulobacter crescentus (strain ATCC 19089 /
CB15) GN=gmk PE=3 SV=1
Length = 213
Score = 32.0 bits (71), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 23/37 (62%)
Query: 209 IDVIVKGETLLVDIDFRSEFEIARSTGAYKAILQSLP 245
+D + +GE++L DIDF+ ++ + GA ++ LP
Sbjct: 94 MDALSRGESVLFDIDFQGAMKVHKQAGADSVLVYILP 130
>sp|Q97D82|RRBR1_CLOAB Reverse rubrerythrin-1 OS=Clostridium acetobutylicum (strain ATCC
824 / DSM 792 / JCM 1419 / LMG 5710 / VKM B-1787)
GN=rbr3A PE=1 SV=1
Length = 181
Score = 31.6 bits (70), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 20/86 (23%), Positives = 41/86 (47%), Gaps = 12/86 (13%)
Query: 186 YDCSICKSKW------DKCPSFPAGEYEYIDVIVKGETLLVDIDFRSEFEIARSTGAYKA 239
+ C +C + +KCP AG+ ++++V +GE + E +I + G K
Sbjct: 4 FKCVVCGYIYTGEDAPEKCPVCGAGKDKFVEVKDEGEG------WADEHKIGVAKGVDKE 57
Query: 240 ILQSLPYIFVGKPERIGQIVSIVSEA 265
+L+ L F G+ +G +++ +A
Sbjct: 58 VLEGLRANFTGECTEVGMYLAMARQA 83
>sp|Q5LMR4|EFG_RUEPO Elongation factor G OS=Ruegeria pomeroyi (strain ATCC 700808 / DSM
15171 / DSS-3) GN=fusA PE=3 SV=1
Length = 705
Score = 31.6 bits (70), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 38/78 (48%), Gaps = 5/78 (6%)
Query: 308 IESENRAAAESDDCGELELIFGEETTPSESSSSPVKEPVEV-AMTWKPP----AVKPKTV 362
+ S NR + G++ + G + T + + K+PV + MT+ P AV+PKT
Sbjct: 372 MHSNNREEIDEAFAGDIIALAGLKDTTTGDTLCDAKDPVVLETMTFPDPVIEIAVEPKTK 431
Query: 363 EKRTKMVTGLASLLKEKP 380
+ KM GLA L E P
Sbjct: 432 GDQEKMSQGLARLAAEDP 449
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.131 0.380
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 140,249,439
Number of Sequences: 539616
Number of extensions: 5886266
Number of successful extensions: 14588
Number of sequences better than 100.0: 36
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 35
Number of HSP's that attempted gapping in prelim test: 14569
Number of HSP's gapped (non-prelim): 47
length of query: 380
length of database: 191,569,459
effective HSP length: 119
effective length of query: 261
effective length of database: 127,355,155
effective search space: 33239695455
effective search space used: 33239695455
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 62 (28.5 bits)