Query 016918
Match_columns 380
No_of_seqs 162 out of 219
Neff 3.8
Searched_HMMs 46136
Date Fri Mar 29 03:59:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016918.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016918hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF04720 DUF506: Protein of un 100.0 1.7E-68 3.7E-73 498.2 19.8 207 76-296 1-218 (218)
2 TIGR01615 A_thal_3542 uncharac 100.0 7.7E-60 1.7E-64 410.9 13.8 125 174-298 1-131 (131)
3 PF00797 Acetyltransf_2: N-ace 95.1 0.071 1.5E-06 49.3 7.0 55 173-227 52-109 (240)
4 PRK15047 N-hydroxyarylamine O- 92.9 0.3 6.4E-06 48.0 7.0 54 173-226 72-127 (281)
5 PF08742 C8: C8 domain; Inter 81.8 1.6 3.6E-05 33.8 3.2 62 218-284 10-71 (74)
6 COG2162 NhoA Arylamine N-acety 73.6 8.5 0.00018 38.5 6.2 59 173-231 73-134 (275)
7 smart00460 TGc Transglutaminas 71.2 27 0.00058 25.7 7.1 52 172-223 11-67 (68)
8 PF14475 Mso1_Sec1_bdg: Sec1-b 67.5 6.1 0.00013 29.3 2.8 20 261-280 21-40 (41)
9 PF01841 Transglut_core: Trans 66.0 14 0.00029 29.6 4.9 52 171-222 55-113 (113)
10 PF15645 Tox-PLDMTX: Dermonecr 61.8 29 0.00064 31.3 6.6 73 172-256 9-84 (135)
11 PF09551 Spore_II_R: Stage II 54.0 54 0.0012 29.6 6.9 44 171-214 55-106 (130)
12 PF08774 VRR_NUC: VRR-NUC doma 47.9 21 0.00045 29.1 3.1 23 173-195 78-100 (100)
13 PRK08462 biotin carboxylase; V 47.6 37 0.00081 34.6 5.6 109 171-281 13-136 (445)
14 PRK14675 hypothetical protein; 46.6 1E+02 0.0022 27.2 7.4 81 175-281 16-98 (125)
15 TIGR00514 accC acetyl-CoA carb 45.2 31 0.00067 35.3 4.6 109 171-281 11-134 (449)
16 PF01927 Mut7-C: Mut7-C RNAse 44.9 8.7 0.00019 34.1 0.5 68 175-262 10-78 (147)
17 COG3349 Uncharacterized conser 38.1 35 0.00077 36.7 3.8 72 177-262 15-86 (485)
18 PRK08591 acetyl-CoA carboxylas 36.6 62 0.0013 32.9 5.2 44 236-280 90-133 (451)
19 smart00832 C8 C8 domain. This 29.2 50 0.0011 26.4 2.5 62 218-284 10-73 (76)
20 PRK05586 biotin carboxylase; V 28.8 2.1E+02 0.0045 29.4 7.5 44 236-280 90-133 (447)
21 PRK08463 acetyl-CoA carboxylas 26.3 84 0.0018 32.8 4.2 105 171-282 11-134 (478)
22 PRK08654 pyruvate carboxylase 24.2 1.3E+02 0.0029 31.9 5.3 46 236-282 90-135 (499)
23 cd00523 archeal_HJR Holliday j 24.0 2.5E+02 0.0054 24.8 6.1 47 174-227 9-57 (123)
24 PRK07178 pyruvate carboxylase 23.2 1.3E+02 0.0028 31.4 4.9 106 170-282 10-134 (472)
25 TIGR02144 LysX_arch Lysine bio 22.2 6.4E+02 0.014 23.5 8.9 41 239-283 66-108 (280)
26 PHA01753 Holliday junction res 21.7 3.1E+02 0.0066 24.6 6.2 48 173-227 10-59 (121)
27 PF13837 Myb_DNA-bind_4: Myb/S 20.6 54 0.0012 25.6 1.2 26 171-196 34-61 (90)
No 1
>PF04720 DUF506: Protein of unknown function (DUF506) ; InterPro: IPR006502 This family of uncharacterised plant proteins are defined by a region found toward the C terminus. This region is strongly conserved (greater than 30 % sequence identity between most pairs of members) but flanked by highly divergent regions including stretches of low-complexity sequence.
Probab=100.00 E-value=1.7e-68 Score=498.15 Aligned_cols=207 Identities=50% Similarity=0.864 Sum_probs=178.1
Q ss_pred HHHHHHHHHhhccccccccccCCCCcccCCCCCCCCCCcccccccCCCCCCCCCCcccHHHHHHhhccCCCHHHHh---H
Q 016918 76 LDKMVQNFIEEFNEKQSNAKCSRNRCNCFNGNGNDSSDDEFDLINGFGDSVNGGSFSDFSDIVKSLIPCASVTERN---L 152 (380)
Q Consensus 76 Ls~MV~~FlEe~~e~~~~~~~~~~~cnc~~g~~~d~sdde~d~~~~~~d~~~~~~~~e~~e~Lk~ll~~~s~~Er~---L 152 (380)
|++||++|||++++... ..|++|+++++++++.|.+++.. ...+..+.|+.|+++.+..|++ |
T Consensus 1 Ls~mV~~FlE~~~~~~~--------~~~~~~~~~~~~~~~~d~~~~~~------~~~~~~e~l~~Ll~~~~~~e~~~~~l 66 (218)
T PF04720_consen 1 LSDMVQGFLEEEESSAP--------SFSFSGNGDDSSDEDSDSDSGSS------ESAEFWEELQELLQCISERESSRRRL 66 (218)
T ss_pred CHHHHHHHhccCCcccc--------cccccccCCCCccccccccCccc------chHHHHHHHHHHHhccccccchHHHH
Confidence 78999999999876542 22366666555555544332111 2356778888999888777766 8
Q ss_pred HHHHHHHHHhhcccC--CChhhhHHHHHHHHhhCCCceEEEeecCCCCCCCCCCceeeEEEEeCCe------eEEEecCc
Q 016918 153 LADVAVIVDKNSKNH--KRKDDLRKIVTDGLSSLGYDCSICKSKWDKCPSFPAGEYEYIDVIVKGE------TLLVDIDF 224 (380)
Q Consensus 153 LadV~~av~~~~~~~--~~~~~lrr~v~~~Lr~~GYdAaiCkSrW~~S~~~paG~heYIDV~~~~~------r~IVD~dF 224 (380)
+++|.++++.+...+ .++..++|.||++||.+||||+||||+|++++++|+|+||||||++.+. ||||||+|
T Consensus 67 ~~~v~~~v~~~~~~~~~~~~~~~rr~v~~~Lr~~GydAaiCkS~W~~s~~~p~g~yeyIdV~~~~~~~~~~~r~IVd~~f 146 (218)
T PF04720_consen 67 LADVRRAVEEAKDEIKRGCRSCLRRSVMSRLRALGYDAAICKSRWESSGGIPAGEYEYIDVIVSGSSSGKSERYIVDPDF 146 (218)
T ss_pred HHHHHHHHHHHHhhhcccchHHHHHHHHHHHHhCCCCEEEEEecCCCCCCCCCcceeEEEEEECCCCCCcceeEEEecch
Confidence 999999999774322 2456689999999999999999999999999999999999999999865 99999999
Q ss_pred ccccccccCcHHHHHHHHhCCCeeeeChhhHHHHHHHHHHHHHHHHHhcCCCCCCCCcchHHHhhccCCccc
Q 016918 225 RSEFEIARSTGAYKAILQSLPYIFVGKPERIGQIVSIVSEAAKLSLKKKGMHFPPWRKAEYMRAKWLSPYTR 296 (380)
Q Consensus 225 R~qFeIARpT~~Y~~ll~~LP~vFVG~~~rL~~iV~~mc~Aak~S~k~~Gm~lPPWRk~~ym~aKWl~~~~R 296 (380)
|+||||||||++|+++|++||.||||+.++|++||++||+|||+|||++|||||||||.+|||+|||++|+|
T Consensus 147 r~~FeiArpt~~Y~~ll~~lP~vfVG~~~~L~~iV~~~c~a~k~s~k~~g~~lPPWR~~~ym~aKW~~~y~R 218 (218)
T PF04720_consen 147 RSQFEIARPTPEYAALLAALPEVFVGTPERLKQIVRLMCDAAKRSFKERGMHLPPWRKNSYMQAKWLSPYKR 218 (218)
T ss_pred HhCeeecCCCHHHHHHHHhCCCceEcCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCchHHHHHhccCCCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999998
No 2
>TIGR01615 A_thal_3542 uncharacterized plant-specific domain TIGR01615. of a number of uncharacterized plant proteins. The domain is strongly conserved (greater than 30 % sequence identity between most pairs of members) but flanked by highly divergent regions including stretches of low-complexity sequence.
Probab=100.00 E-value=7.7e-60 Score=410.88 Aligned_cols=125 Identities=59% Similarity=1.061 Sum_probs=121.7
Q ss_pred HHHHHHHHhhCCCceEEEeecCCCCCCCCCCceeeEEEEeCC------eeEEEecCcccccccccCcHHHHHHHHhCCCe
Q 016918 174 RKIVTDGLSSLGYDCSICKSKWDKCPSFPAGEYEYIDVIVKG------ETLLVDIDFRSEFEIARSTGAYKAILQSLPYI 247 (380)
Q Consensus 174 rr~v~~~Lr~~GYdAaiCkSrW~~S~~~paG~heYIDV~~~~------~r~IVD~dFR~qFeIARpT~~Y~~ll~~LP~v 247 (380)
||.||++||.+||||+||||+|++++++|+|+||||||++.+ +|||||+|||+||||||||++|+++|++||.|
T Consensus 1 ~r~v~~~Lr~~Gy~AaiCkS~W~~s~~~p~G~yeyidV~~~~~~~~~~~R~iVd~dFr~~FeiARpt~~Y~~ll~~LP~v 80 (131)
T TIGR01615 1 RRIVMSLLRSLGYDAAICKSKWDSSGDIPAGKYEYIDVVDGDGSKKQEMRVIIDLDFRSEFEIARPTEEYKRLLESLPEV 80 (131)
T ss_pred ChhHHHHHHHCCCCeeeEEeecCCCCCCCCCceeeEEEEecCCCCCCcceEEEeccchhhceecCCCHHHHHHHHhCCcc
Confidence 578999999999999999999999999999999999999875 49999999999999999999999999999999
Q ss_pred eeeChhhHHHHHHHHHHHHHHHHHhcCCCCCCCCcchHHHhhccCCcccCC
Q 016918 248 FVGKPERIGQIVSIVSEAAKLSLKKKGMHFPPWRKAEYMRAKWLSPYTRAS 298 (380)
Q Consensus 248 FVG~~~rL~~iV~~mc~Aak~S~k~~Gm~lPPWRk~~ym~aKWl~~~~R~~ 298 (380)
|||+.++|++||++||+|||+|||++|||||||||.+|||+|||+||+|++
T Consensus 81 FVG~~~rL~~iV~~mc~Aak~Slk~~gmhlPPWRk~~ym~aKWl~~~~R~~ 131 (131)
T TIGR01615 81 FVGTTERLRQLVRLMCDAAKKSLKKKGMPLPPWRKNRYMQSKWLGPYKRTS 131 (131)
T ss_pred eECCHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCchHHHHHhccCCccCCC
Confidence 999999999999999999999999999999999999999999999999985
No 3
>PF00797 Acetyltransf_2: N-acetyltransferase; InterPro: IPR001447 Arylamine N-acetyltransferase (NAT) is a cytosolic enzyme of approximately 30 kDa. It facilitates the transfer of an acetyl group from acetyl coenzyme A on to a wide range of arylamine, N-hydroxyarylamines and hydrazines. Acetylation of these compounds generally results in inactivation. NAT is found in many species from Mycobacteria (Mycobacterium tuberculosis, Mycobacterium smegmatis etc) to Homo sapiens (Human). It was the first enzyme to be observed to have polymorphic activity amongst human individuals. NAT is responsible for the inactivation of Isoniazid (a drug used to treat tuberculosis) in humans. The NAT protein has also been shown to be involved in the breakdown of folic acid. NAT catalyses the reaction: Acetyl-coA + arylamine = coA + N-acetylarylamine NAT is the target of a common genetic polymorphism of clinical relevance in humans. The N-acetylation polymorphism is determined by low or high NAT activity in liver. NAT has been implicated in the action and toxicity of amine-containing drugs, and in the susceptibility to cancer and systematic lupus erythematosus. Two highly similar human genes for NAT, termed NAT1 and NAT2, encode genetically invariant and variant NAT proteins, respectively. ; GO: 0016407 acetyltransferase activity, 0008152 metabolic process; PDB: 1W6F_A 1W5R_A 1GX3_D 2PQT_A 2IJA_A 1W4T_A 2BSZ_B 3D9W_B 3LTW_A 3LNB_A ....
Probab=95.06 E-value=0.071 Score=49.35 Aligned_cols=55 Identities=25% Similarity=0.412 Sum_probs=44.2
Q ss_pred hHHHHHHHHhhCCCceEEEeec--CCCCCC-CCCCceeeEEEEeCCeeEEEecCcccc
Q 016918 173 LRKIVTDGLSSLGYDCSICKSK--WDKCPS-FPAGEYEYIDVIVKGETLLVDIDFRSE 227 (380)
Q Consensus 173 lrr~v~~~Lr~~GYdAaiCkSr--W~~S~~-~paG~heYIDV~~~~~r~IVD~dFR~q 227 (380)
+...+...|+++||++.++.++ +..... .+.+.|--|-|.+++.+|+||+.|=..
T Consensus 52 lN~lf~~lL~~lGf~v~~~~arv~~~~~~~~~~~~~H~~liV~~~~~~ylvDvGfG~~ 109 (240)
T PF00797_consen 52 LNGLFYWLLRELGFDVTLVSARVYSPGGPDYWPPRTHLVLIVTLDGERYLVDVGFGGP 109 (240)
T ss_dssp HHHHHHHHHHHCT-EEEEEEEEEETTTTTCCSSSEEEEEEEEEETTEEEEE-SSSTTC
T ss_pred HHHHHHHHHHHCCCeEEEEEEEEEeCCCCCCCCCCceEEEEEEECCEEEEEeccCCCc
Confidence 5788999999999999999975 333332 567899999999999999999999876
No 4
>PRK15047 N-hydroxyarylamine O-acetyltransferase; Provisional
Probab=92.94 E-value=0.3 Score=48.05 Aligned_cols=54 Identities=19% Similarity=0.364 Sum_probs=44.9
Q ss_pred hHHHHHHHHhhCCCceEEEeec--CCCCCCCCCCceeeEEEEeCCeeEEEecCccc
Q 016918 173 LRKIVTDGLSSLGYDCSICKSK--WDKCPSFPAGEYEYIDVIVKGETLLVDIDFRS 226 (380)
Q Consensus 173 lrr~v~~~Lr~~GYdAaiCkSr--W~~S~~~paG~heYIDV~~~~~r~IVD~dFR~ 226 (380)
+...+...|+++||++.....+ |...+..++..|-.+-|.+++.+|+||+.|-+
T Consensus 72 ~N~Lf~~~L~~LGF~v~~~~arV~~~~~~~~~~~tH~~l~V~i~~~~yLvDVGFG~ 127 (281)
T PRK15047 72 QNGLFERVLRELGFNVRSLLGRVVLSNPPALPPRTHRLLLVELEGEKWIADVGFGG 127 (281)
T ss_pred HHHHHHHHHHHcCCcEEEEEEEEEecCCCCCCCcCcEEEEEEECCeeEEEEecCCC
Confidence 4678889999999999987764 43334446779999999999999999999986
No 5
>PF08742 C8: C8 domain; InterPro: IPR014853 The proteins in this entry contained a domain rich in positionally conserved cysteine residues. Most proteins contains 7 or 8 cysteine residues. The domain is found in disease-related proteins including von Willebrand factor, Alpha tectorin, Zonadhesin and Mucin. It is often found on proteins containing IPR001846 from INTERPRO and IPR002919 from INTERPRO.
Probab=81.77 E-value=1.6 Score=33.82 Aligned_cols=62 Identities=18% Similarity=0.327 Sum_probs=44.7
Q ss_pred EEEecCcccccccccCcHHHHHHHHhCCCeeeeChhhHHHHHHHHHHHHHHHHHhcCCCCCCCCcch
Q 016918 218 LLVDIDFRSEFEIARSTGAYKAILQSLPYIFVGKPERIGQIVSIVSEAAKLSLKKKGMHFPPWRKAE 284 (380)
Q Consensus 218 ~IVD~dFR~qFeIARpT~~Y~~ll~~LP~vFVG~~~rL~~iV~~mc~Aak~S~k~~Gm~lPPWRk~~ 284 (380)
+|.|+.|+.=+.+.-|++-|...+..+=. +-|.. ..+-..|.+-++.+ +..|+.+++||+..
T Consensus 10 ~l~~~~F~~C~~~v~~~~f~~~C~~d~C~-~~~~~---~~~C~~l~~Ya~~C-~~~g~~~~~WR~~~ 71 (74)
T PF08742_consen 10 ILLDPEFAPCHSVVDPDPFYEACVYDMCA-CPGSQ---QCLCEALSAYAREC-QRAGICVGDWRTPT 71 (74)
T ss_pred HHcCchhhhhcccCccHHHHHHHHHHHcC-CCCCc---chhhHHHHHHHHHH-HHCcCCCCCCCCcC
Confidence 45688899999999999999998866533 22222 34445555556666 77899999999864
No 6
>COG2162 NhoA Arylamine N-acetyltransferase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=73.60 E-value=8.5 Score=38.53 Aligned_cols=59 Identities=25% Similarity=0.488 Sum_probs=49.5
Q ss_pred hHHHHHHHHhhCCCceEE--EeecCCCCC-CCCCCceeeEEEEeCCeeEEEecCcccccccc
Q 016918 173 LRKIVTDGLSSLGYDCSI--CKSKWDKCP-SFPAGEYEYIDVIVKGETLLVDIDFRSEFEIA 231 (380)
Q Consensus 173 lrr~v~~~Lr~~GYdAai--CkSrW~~S~-~~paG~heYIDV~~~~~r~IVD~dFR~qFeIA 231 (380)
+...+...|+++||+... |+=.|...+ ..|.+.|.-+-|.+.++.+|+|..|=.+--.|
T Consensus 73 lNglf~~vL~~lGF~v~~l~arV~~g~~~~a~~~~tH~~L~v~~~~~~~l~DvGFGg~~l~A 134 (275)
T COG2162 73 LNGLFGRVLRELGFNVRLLLARVVWGLAPDALPPRTHRLLLVELEGETWLADVGFGGQTLTA 134 (275)
T ss_pred hhhHHHHHHHHcCCcceeeEEEEEecCCCCCCCcccceEEEEEecCceeEEecCCCCCCcCC
Confidence 466777789999999976 666898754 45679999999999999999999999776666
No 7
>smart00460 TGc Transglutaminase/protease-like homologues. Transglutaminases are enzymes that establish covalent links between proteins. A subset of transglutaminase homologues appear to catalyse the reverse reaction, the hydrolysis of peptide bonds. Proteins with this domain are both extracellular and intracellular, and it is likely that the eukaryotic intracellular proteins are involved in signalling events.
Probab=71.24 E-value=27 Score=25.67 Aligned_cols=52 Identities=15% Similarity=0.109 Sum_probs=39.3
Q ss_pred hhHHHHHHHHhhCCCceEEEee-cCCCCCC----CCCCceeeEEEEeCCeeEEEecC
Q 016918 172 DLRKIVTDGLSSLGYDCSICKS-KWDKCPS----FPAGEYEYIDVIVKGETLLVDID 223 (380)
Q Consensus 172 ~lrr~v~~~Lr~~GYdAaiCkS-rW~~S~~----~paG~heYIDV~~~~~r~IVD~d 223 (380)
+....++..||.+|+.|.++.. .+..... -+...|.++.|-+++.=+.+||.
T Consensus 11 ~~a~l~~~llr~~GIpar~v~g~~~~~~~~~~~~~~~~~H~W~ev~~~~~W~~~D~~ 67 (68)
T smart00460 11 EFAALFVALLRSLGIPARVVSGYLKAPDTIGGLRSIWEAHAWAEVYLEGGWVPVDPT 67 (68)
T ss_pred HHHHHHHHHHHHCCCCeEEEeeeecCCCCCcccccCCCcEEEEEEEECCCeEEEeCC
Confidence 3567788899999999999976 3322221 24578999999988888889985
No 8
>PF14475 Mso1_Sec1_bdg: Sec1-binding region of Mso1
Probab=67.50 E-value=6.1 Score=29.27 Aligned_cols=20 Identities=30% Similarity=0.576 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHhcCCCCCCC
Q 016918 261 IVSEAAKLSLKKKGMHFPPW 280 (380)
Q Consensus 261 ~mc~Aak~S~k~~Gm~lPPW 280 (380)
++|.++.+-..++|.++|+|
T Consensus 21 ~v~r~l~~yY~~k~~~~P~W 40 (41)
T PF14475_consen 21 HVHRVLRKYYTEKGRPFPGW 40 (41)
T ss_pred HHHHHHHHHHHHcCCCCCCc
Confidence 68999999999999999999
No 9
>PF01841 Transglut_core: Transglutaminase-like superfamily; InterPro: IPR002931 This domain is found in many proteins known to have transglutaminase activity, i.e. which cross-link proteins through an acyl-transfer reaction between the gamma-carboxamide group of peptide-bound glutamine and the epsilon-amino group of peptide-bound lysine, resulting in a epsilon-(gamma-glutamyl)lysine isopeptide bond. Tranglutaminases have been found in a diverse range of species, from bacteria through to mammals. The enzymes require calcium binding and their activity leads to post-translational modification of proteins through acyl-transfer reactions, involving peptidyl glutamine residues as acyl donors and a variety of primary amines as acyl acceptors, with the generation of proteinase resistant isopeptide bonds []. Sequence conservation in this superfamily primarily involves three motifs that centre around conserved cysteine, histidine, and aspartate residues that form the catalytic triad in the structurally characterised transglutaminase, the human blood clotting factor XIIIa' []. On the basis of the experimentally demonstrated activity of the Methanobacterium phage psiM2 pseudomurein endoisopeptidase [], it is proposed that many, if not all, microbial homologs of the transglutaminases are proteases and that the eukaryotic transglutaminases have evolved from an ancestral protease []. A subunit of plasma Factor XIII revealed that each Factor XIIIA subunit is composed of four domains (termed N-terminal beta-sandwich, core domain (containing the catalytic and the regulatory sites), and C-terminal beta-barrels 1 and 2) and that two monomers assemble into the native dimer through the surfaces in domains 1 and 2, in opposite orientation. This organisation in four domains is highly conserved during evolution among transglutaminase isoforms [].; PDB: 2F4M_A 2F4O_A 1GGY_B 1FIE_B 1GGU_B 1GGT_B 1F13_A 1QRK_B 1EVU_A 1EX0_B ....
Probab=66.01 E-value=14 Score=29.60 Aligned_cols=52 Identities=13% Similarity=0.172 Sum_probs=36.1
Q ss_pred hhhHHHHHHHHhhCCCceEEEeecCCCC------CCCCCCceeeEEEEe-CCeeEEEec
Q 016918 171 DDLRKIVTDGLSSLGYDCSICKSKWDKC------PSFPAGEYEYIDVIV-KGETLLVDI 222 (380)
Q Consensus 171 ~~lrr~v~~~Lr~~GYdAaiCkSrW~~S------~~~paG~heYIDV~~-~~~r~IVD~ 222 (380)
.++...++..||.+|+.|.+........ .......|.+..|-+ .+.=+.+||
T Consensus 55 ~~~a~l~~allr~~Gipar~v~g~~~~~~~~~~~~~~~~~~H~w~ev~~~~~~W~~~Dp 113 (113)
T PF01841_consen 55 EDYASLFVALLRALGIPARVVSGYVKGPDPDGDYSVDGNDNHAWVEVYLPGGGWIPLDP 113 (113)
T ss_dssp HHHHHHHHHHHHHHT--EEEEEEEEEECSSTTCTSTSSEEEEEEEEEEETTTEEEEEET
T ss_pred HHHHHHHHHHHhhCCCceEEEEEEcCCccccccccCCCCCCEEEEEEEEcCCcEEEcCC
Confidence 3467788999999999998887544321 133456799999999 567788886
No 10
>PF15645 Tox-PLDMTX: Dermonecrotoxin of the Papain-like fold
Probab=61.81 E-value=29 Score=31.29 Aligned_cols=73 Identities=15% Similarity=0.112 Sum_probs=51.2
Q ss_pred hhHHHHHHHHhhCCC-ceEEEe-ecCCCCCCCCCCceeeEEEEeCCeeEEEecCcccccccccCcHHHHHHHHhCC-Cee
Q 016918 172 DLRKIVTDGLSSLGY-DCSICK-SKWDKCPSFPAGEYEYIDVIVKGETLLVDIDFRSEFEIARSTGAYKAILQSLP-YIF 248 (380)
Q Consensus 172 ~lrr~v~~~Lr~~GY-dAaiCk-SrW~~S~~~paG~heYIDV~~~~~r~IVD~dFR~qFeIARpT~~Y~~ll~~LP-~vF 248 (380)
+.-+.|+..||..|| |..+.. .-|+.......-.|-=+.+...|.-|||||--. ||.=--. + ..|
T Consensus 9 ~a~~~v~~~lk~~g~~~~k~~~l~~W~~~~~~~p~NH~vv~~k~~g~eyV~D~Ta~-QF~~~~~-----------~~~p~ 76 (135)
T PF15645_consen 9 SAMKEVADFLKDKGYEDIKYRGLLIWENANDDSPTNHFVVVAKKNGKEYVFDPTAH-QFSNKGN-----------DNGPI 76 (135)
T ss_pred HHHHHHHHHHHhCCCCcceeeEEEEecCCCccCCcceEEEEEEECCEEEEEeCcHH-HhhccCC-----------CCCce
Confidence 356779999999999 544433 359777777778887777778899999999643 4431111 2 688
Q ss_pred eeChhhHH
Q 016918 249 VGKPERIG 256 (380)
Q Consensus 249 VG~~~rL~ 256 (380)
+|+.+.=.
T Consensus 77 i~~~~~W~ 84 (135)
T PF15645_consen 77 ILPEDAWK 84 (135)
T ss_pred EecHHHHH
Confidence 88887654
No 11
>PF09551 Spore_II_R: Stage II sporulation protein R (spore_II_R); InterPro: IPR014202 This entry is designated stage II sporulation protein R. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species. SpoIIR is a signalling protein that links the activation of sigma E to the transcriptional activity of sigma F during sporulation [, ].
Probab=54.05 E-value=54 Score=29.56 Aligned_cols=44 Identities=27% Similarity=0.449 Sum_probs=30.3
Q ss_pred hhhHHHHHHHHhhCCCceEEEe--------ecCCCCCCCCCCceeeEEEEeC
Q 016918 171 DDLRKIVTDGLSSLGYDCSICK--------SKWDKCPSFPAGEYEYIDVIVK 214 (380)
Q Consensus 171 ~~lrr~v~~~Lr~~GYdAaiCk--------SrW~~S~~~paG~heYIDV~~~ 214 (380)
..+.+..-+.|...||+-.+-- +|+-+...+|+|+|+.+-|.++
T Consensus 55 ~~Ie~~A~~~l~~~G~~y~v~v~~~~~~FPtK~YG~~~~PaG~YeAlrI~IG 106 (130)
T PF09551_consen 55 PEIEQIAEEVLAEEGYDYPVKVELGRFYFPTKTYGDIVLPAGEYEALRITIG 106 (130)
T ss_pred HHHHHHHHHHHHHhCCCCcEEEEEEeeeCCCceECCEeccCCceEEEEEEec
Confidence 3466666778888896644332 2333455689999999999875
No 12
>PF08774 VRR_NUC: VRR-NUC domain; InterPro: IPR014883 This entry contains proteins with the VRR-NUC domain. It is associated with members of the PD-(D/E)XK nuclease superfamily, which include the type III restriction modification enzymes, for example StyLTI: (P40815 from SWISSPROT).; GO: 0016788 hydrolase activity, acting on ester bonds
Probab=47.90 E-value=21 Score=29.09 Aligned_cols=23 Identities=26% Similarity=0.410 Sum_probs=19.8
Q ss_pred hHHHHHHHHhhCCCceEEEeecC
Q 016918 173 LRKIVTDGLSSLGYDCSICKSKW 195 (380)
Q Consensus 173 lrr~v~~~Lr~~GYdAaiCkSrW 195 (380)
..+...+.|+..||++.||.+.|
T Consensus 78 ~Q~~~~~~l~~~G~~v~V~~~~~ 100 (100)
T PF08774_consen 78 NQKEWIDKLREAGFRVAVCRSVE 100 (100)
T ss_pred HHHHHHHHHHHCCCEEEEEEccC
Confidence 45666789999999999999987
No 13
>PRK08462 biotin carboxylase; Validated
Probab=47.58 E-value=37 Score=34.56 Aligned_cols=109 Identities=15% Similarity=0.094 Sum_probs=60.2
Q ss_pred hhhHHHHHHHHhhCCCceEEEeecCCCC-CCCCCCceeeEEEEeC--CeeE-----EEecCcccccccccCc-------H
Q 016918 171 DDLRKIVTDGLSSLGYDCSICKSKWDKC-PSFPAGEYEYIDVIVK--GETL-----LVDIDFRSEFEIARST-------G 235 (380)
Q Consensus 171 ~~lrr~v~~~Lr~~GYdAaiCkSrW~~S-~~~paG~heYIDV~~~--~~r~-----IVD~dFR~qFeIARpT-------~ 235 (380)
+.+.-.++..++++||.+..|-+.-+.. +.+.. -++++.+-.. .+.| |++.--+.++....|+ .
T Consensus 13 g~~~~~~~~~~~~~G~~~v~~~~~~d~~~~~~~~-ad~~~~~~~~~~~~~y~~~~~l~~~~~~~~~D~i~pg~g~lse~~ 91 (445)
T PRK08462 13 GEIALRAIRTIQEMGKEAIAIYSTADKDALYLKY-ADAKICIGGAKSSESYLNIPAIISAAEIFEADAIFPGYGFLSENQ 91 (445)
T ss_pred cHHHHHHHHHHHHcCCCEEEEechhhcCCchhhh-CCEEEEeCCCchhcccCCHHHHHHHHHHcCCCEEEECCCccccCH
Confidence 4456668999999999999997766543 22221 2233333000 0111 1222222222222222 3
Q ss_pred HHHHHHHhCCCeeeeChhhHHHHHHHHHHHHHHHHHhcCCCCCCCC
Q 016918 236 AYKAILQSLPYIFVGKPERIGQIVSIVSEAAKLSLKKKGMHFPPWR 281 (380)
Q Consensus 236 ~Y~~ll~~LP~vFVG~~~rL~~iV~~mc~Aak~S~k~~Gm~lPPWR 281 (380)
....+++.+--.|+|.......+..- =..+++-|++.|.++|||.
T Consensus 92 ~~a~~~e~~Gi~~~g~~~~~~~~~~d-K~~~r~~l~~~gIp~pp~~ 136 (445)
T PRK08462 92 NFVEICSHHNIKFIGPSVEVMALMSD-KSKAKEVMKRAGVPVIPGS 136 (445)
T ss_pred HHHHHHHHCCCeEECcCHHHHHHhCC-HHHHHHHHHHCCCCCCCCc
Confidence 34456677777788877654333211 1467888999999999985
No 14
>PRK14675 hypothetical protein; Provisional
Probab=46.60 E-value=1e+02 Score=27.19 Aligned_cols=81 Identities=22% Similarity=0.218 Sum_probs=51.6
Q ss_pred HHHHHHHhhCCCceEEEeecCCCCCCCCCCceeeEEEEeC--CeeEEEecCcccccccccCcHHHHHHHHhCCCeeeeCh
Q 016918 175 KIVTDGLSSLGYDCSICKSKWDKCPSFPAGEYEYIDVIVK--GETLLVDIDFRSEFEIARSTGAYKAILQSLPYIFVGKP 252 (380)
Q Consensus 175 r~v~~~Lr~~GYdAaiCkSrW~~S~~~paG~heYIDV~~~--~~r~IVD~dFR~qFeIARpT~~Y~~ll~~LP~vFVG~~ 252 (380)
...+..|...||.. ....|.. + |-.||++.. +.-++||+-.|..-..+.|-.. |...
T Consensus 16 ~~A~~~L~~~G~~i--l~rn~r~----~---~GEIDlIa~d~~~lvFVEVK~R~~~~~g~~~~a------------V~~~ 74 (125)
T PRK14675 16 SIAVTYLKGLRYKI--VERNFRC----R---CGEIDIIARDGKTLVFVEVKTRKNYAYGVPQLA------------VTPF 74 (125)
T ss_pred HHHHHHHHHCCCEE--EEEEEeC----C---CCeEEEEEEeCCEEEEEEEEeccCCCCcChHHc------------CCHH
Confidence 44677999999964 4456743 2 557999874 5789999999976554444211 1111
Q ss_pred hhHHHHHHHHHHHHHHHHHhcCCCCCCCC
Q 016918 253 ERIGQIVSIVSEAAKLSLKKKGMHFPPWR 281 (380)
Q Consensus 253 ~rL~~iV~~mc~Aak~S~k~~Gm~lPPWR 281 (380)
. . +-|..+|+.-|.++++.-.|+|
T Consensus 75 K-~----~ri~~~A~~yL~~~~~~~~~~R 98 (125)
T PRK14675 75 K-Q----RQISKAALTWLAKKKLLDAEAR 98 (125)
T ss_pred H-H----HHHHHHHHHHHHHCCCCCCCEE
Confidence 1 1 1566777888888886434555
No 15
>TIGR00514 accC acetyl-CoA carboxylase, biotin carboxylase subunit. This model represents the biotin carboxylase subunit found usually as a component of acetyl-CoA carboxylase. Acetyl-CoA carboxylase is designated EC 6.4.1.2 and this component, biotin carboxylase, has its own designation, EC 6.3.4.14. Homologous domains are found in eukaryotic forms of acetyl-CoA carboxylase and in a number of other carboxylases (e.g. pyruvate carboxylase), but seed members and trusted cutoff are selected so as to exclude these. In some systems, the biotin carboxyl carrier protein and this protein (biotin carboxylase) may be shared by different carboxyltransferases. However, this model is not intended to identify the biotin carboxylase domain of propionyl-coA carboxylase. The model should hit the full length of proteins, except for chloroplast transit peptides in plants. If it hits a domain only of a longer protein, there may be a problem with the identification.
Probab=45.19 E-value=31 Score=35.30 Aligned_cols=109 Identities=11% Similarity=0.123 Sum_probs=60.1
Q ss_pred hhhHHHHHHHHhhCCCceEEEeecCCC-CCCCCCCceeeEEEEe--CCeeE-----EEecCcccccccccCc-------H
Q 016918 171 DDLRKIVTDGLSSLGYDCSICKSKWDK-CPSFPAGEYEYIDVIV--KGETL-----LVDIDFRSEFEIARST-------G 235 (380)
Q Consensus 171 ~~lrr~v~~~Lr~~GYdAaiCkSrW~~-S~~~paG~heYIDV~~--~~~r~-----IVD~dFR~qFeIARpT-------~ 235 (380)
+.+...++..++.+||.+.+|-+.-+. +..+.. .++|+.+.- ...-| |++.-++.+..+-.|+ .
T Consensus 11 g~~~~~~~~aa~~lG~~vv~~~~~~d~~a~~~~~-aD~~~~~~~~~~~~~y~d~~~l~~~a~~~~id~I~pg~g~~se~~ 89 (449)
T TIGR00514 11 GEIALRILRACKELGIKTVAVHSTADRDALHVLL-ADEAVCIGPAPSAKSYLNIPNIISAAEITGADAIHPGYGFLSENA 89 (449)
T ss_pred CHHHHHHHHHHHHcCCeEEEEEChhhhccccccc-CCEEEEcCCCCchhchhCHHHHHHHHHHhCCCEEEeCCCccccCH
Confidence 446777999999999999999654332 222221 223322200 00001 2222222232222221 2
Q ss_pred HHHHHHHhCCCeeeeChhhHHHHHHHHHHHHHHHHHhcCCCCCCCC
Q 016918 236 AYKAILQSLPYIFVGKPERIGQIVSIVSEAAKLSLKKKGMHFPPWR 281 (380)
Q Consensus 236 ~Y~~ll~~LP~vFVG~~~rL~~iV~~mc~Aak~S~k~~Gm~lPPWR 281 (380)
.+..+++.+--.|+|.......+..- =..+++-|++.|.+.|||-
T Consensus 90 ~~a~~~e~~Gi~~~g~~~~~~~~~~D-K~~~r~~l~~~gip~pp~~ 134 (449)
T TIGR00514 90 NFAEQCERSGFTFIGPSAESIRLMGD-KVSAIETMKKAGVPCVPGS 134 (449)
T ss_pred HHHHHHHHCCCcEECcCHHHHHHhCC-HHHHHHHHHHCCCCCCCCc
Confidence 25667788877788866544333221 1358889999999999984
No 16
>PF01927 Mut7-C: Mut7-C RNAse domain; InterPro: IPR002782 This prokaryotic family of proteins have no known function. The proteins contain four conserved cysteines that may be involved in metal binding or disulphide bridges.
Probab=44.93 E-value=8.7 Score=34.07 Aligned_cols=68 Identities=16% Similarity=0.195 Sum_probs=37.3
Q ss_pred HHHHHHHhhCCCceEEEeecCCCCCCCCCCceeeEEEEeCCeeEEEecCcccccccccCcHHHHHHHHhCC-CeeeeChh
Q 016918 175 KIVTDGLSSLGYDCSICKSKWDKCPSFPAGEYEYIDVIVKGETLLVDIDFRSEFEIARSTGAYKAILQSLP-YIFVGKPE 253 (380)
Q Consensus 175 r~v~~~Lr~~GYdAaiCkSrW~~S~~~paG~heYIDV~~~~~r~IVD~dFR~qFeIARpT~~Y~~ll~~LP-~vFVG~~~ 253 (380)
..||..||.+||||..+... ..++-+..-....|+||=-|- .-+. ....-. .+++...+
T Consensus 10 ~~Lar~LR~lG~Dt~~~~~~---------~D~~il~~A~~e~RillTrd~----------~l~~-~~~~~~~~~li~~~~ 69 (147)
T PF01927_consen 10 GRLARWLRLLGYDTLYSRDI---------DDDEILELAREEGRILLTRDR----------DLLK-RRRVSGGVILIRSDD 69 (147)
T ss_pred HHHHHHHHHCCCcEEEeCCC---------ChHHHHHHhhhCCeEEEECCH----------HHHH-HhhccCCEEEEcCCC
Confidence 45899999999999976522 222323322345788774332 1122 222222 46785555
Q ss_pred hHHHHHHHH
Q 016918 254 RIGQIVSIV 262 (380)
Q Consensus 254 rL~~iV~~m 262 (380)
-..|+.+++
T Consensus 70 ~~~QL~ev~ 78 (147)
T PF01927_consen 70 PEEQLREVL 78 (147)
T ss_pred HHHHHHHHH
Confidence 555655554
No 17
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=38.09 E-value=35 Score=36.67 Aligned_cols=72 Identities=14% Similarity=0.176 Sum_probs=53.0
Q ss_pred HHHHHhhCCCceEEEeecCCCCCCCCCCceeeEEEEeCCeeEEEecCcccccccccCcHHHHHHHHhCCCeeeeChhhHH
Q 016918 177 VTDGLSSLGYDCSICKSKWDKCPSFPAGEYEYIDVIVKGETLLVDIDFRSEFEIARSTGAYKAILQSLPYIFVGKPERIG 256 (380)
Q Consensus 177 v~~~Lr~~GYdAaiCkSrW~~S~~~paG~heYIDV~~~~~r~IVD~dFR~qFeIARpT~~Y~~ll~~LP~vFVG~~~rL~ 256 (380)
-|..|.++|||..||.++|.--|.+.++.- ++--++|-.|+-=| ..|..+++.++++-.+...+|+
T Consensus 15 ~a~~La~~g~~vt~~ea~~~~GGk~~s~~~--------~dg~~~E~glh~f~------~~Y~n~~~ll~~~~~~~~~~~~ 80 (485)
T COG3349 15 AAYELADAGYDVTLYEARDRLGGKVASWRD--------SDGNHVEHGLHVFF------GCYYNLLTLLKELPIEDRLQLR 80 (485)
T ss_pred HHHHHHhCCCceEEEeccCccCceeeeeec--------CCCCeeeeeeEEec------hhHHHHHHHhhhCCchheeehH
Confidence 456789999999999999976555544322 34455666666554 5799999999998888777777
Q ss_pred HHHHHH
Q 016918 257 QIVSIV 262 (380)
Q Consensus 257 ~iV~~m 262 (380)
..+.+.
T Consensus 81 ~~~~~~ 86 (485)
T COG3349 81 EHTKTF 86 (485)
T ss_pred hhhhhh
Confidence 777766
No 18
>PRK08591 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=36.57 E-value=62 Score=32.89 Aligned_cols=44 Identities=20% Similarity=0.355 Sum_probs=31.5
Q ss_pred HHHHHHHhCCCeeeeChhhHHHHHHHHHHHHHHHHHhcCCCCCCC
Q 016918 236 AYKAILQSLPYIFVGKPERIGQIVSIVSEAAKLSLKKKGMHFPPW 280 (380)
Q Consensus 236 ~Y~~ll~~LP~vFVG~~~rL~~iV~~mc~Aak~S~k~~Gm~lPPW 280 (380)
.+..+++.+--.|+|.......+..= =..+++-|++.|.+.|||
T Consensus 90 ~~~~~~e~~gi~~~g~~~~~~~~~~D-K~~~r~~l~~~gIp~pp~ 133 (451)
T PRK08591 90 DFAEICEDSGFTFIGPSAETIRLMGD-KVTAKATMKKAGVPVVPG 133 (451)
T ss_pred HHHHHHHHCCCceECcCHHHHHHhcC-HHHHHHHHHHcCCCCCCC
Confidence 45677888887788866544433322 235788999999999998
No 19
>smart00832 C8 C8 domain. This domain contains 8 conserved cysteine residues, but this family only contains 7 of them to overlaps with other domains. It is found in disease-related proteins including von Willebrand factor, Alpha tectorin, Zonadhesin and Mucin.
Probab=29.19 E-value=50 Score=26.38 Aligned_cols=62 Identities=15% Similarity=0.253 Sum_probs=41.0
Q ss_pred EEEecC--cccccccccCcHHHHHHHHhCCCeeeeChhhHHHHHHHHHHHHHHHHHhcCCCCCCCCcch
Q 016918 218 LLVDID--FRSEFEIARSTGAYKAILQSLPYIFVGKPERIGQIVSIVSEAAKLSLKKKGMHFPPWRKAE 284 (380)
Q Consensus 218 ~IVD~d--FR~qFeIARpT~~Y~~ll~~LP~vFVG~~~rL~~iV~~mc~Aak~S~k~~Gm~lPPWRk~~ 284 (380)
+|.+++ |+.--.+=-|++-|+..+.-+=.. -|..+.|- ..|..-++.+. +.|..+.+||+..
T Consensus 10 ~l~~~~g~F~~Ch~~V~p~~f~~~Cv~D~C~~-~~~~~~lC---~al~aYa~aC~-~~Gv~v~~WR~~~ 73 (76)
T smart00832 10 ILLSPRGPFAACHSVVDPEPFFENCVYDTCAC-GGDCECLC---DALAAYAAACA-EAGVCISPWRTPT 73 (76)
T ss_pred hhcCCCCChHHHhCcCChHHHHHHHHHHHhCC-CCCCcccC---HHHHHHHHHHH-HCcCcCCCCCCCC
Confidence 556663 776666777999999988665322 24444444 34445555555 5899999999875
No 20
>PRK05586 biotin carboxylase; Validated
Probab=28.84 E-value=2.1e+02 Score=29.42 Aligned_cols=44 Identities=14% Similarity=0.261 Sum_probs=30.5
Q ss_pred HHHHHHHhCCCeeeeChhhHHHHHHHHHHHHHHHHHhcCCCCCCC
Q 016918 236 AYKAILQSLPYIFVGKPERIGQIVSIVSEAAKLSLKKKGMHFPPW 280 (380)
Q Consensus 236 ~Y~~ll~~LP~vFVG~~~rL~~iV~~mc~Aak~S~k~~Gm~lPPW 280 (380)
.-..+++.+--.|+|...+...+..= =..+|+-|++.|.++|||
T Consensus 90 ~~a~~~~~~gi~~~g~s~~~~~~~~D-K~~~k~~l~~~GIpvp~~ 133 (447)
T PRK05586 90 KFAKMCKECNIVFIGPDSETIELMGN-KSNAREIMIKAGVPVVPG 133 (447)
T ss_pred HHHHHHHHCCCcEECcCHHHHHhhCC-HHHHHHHHHHCCCCCCCC
Confidence 44456677777788876654433321 146788899999999998
No 21
>PRK08463 acetyl-CoA carboxylase subunit A; Validated
Probab=26.32 E-value=84 Score=32.83 Aligned_cols=105 Identities=20% Similarity=0.304 Sum_probs=58.8
Q ss_pred hhhHHHHHHHHhhCCCceEEEeecCCC-CCCCCCC----------ceeeEEE--EeC-----C-eeEEEecCcccccccc
Q 016918 171 DDLRKIVTDGLSSLGYDCSICKSKWDK-CPSFPAG----------EYEYIDV--IVK-----G-ETLLVDIDFRSEFEIA 231 (380)
Q Consensus 171 ~~lrr~v~~~Lr~~GYdAaiCkSrW~~-S~~~paG----------~heYIDV--~~~-----~-~r~IVD~dFR~qFeIA 231 (380)
+.+...++..++.+||.+..+-+.-+. +..+..- ...|+|+ ++. + ..++.=..|-++
T Consensus 11 ge~a~~~i~aa~~lG~~~v~v~~~~d~~~~~~~~AD~~~~i~~~~~~~y~d~~~i~~~a~~~~iDaI~pg~g~lsE---- 86 (478)
T PRK08463 11 GEIAVRVIRACRDLHIKSVAIYTEPDRECLHVKIADEAYRIGTDPIKGYLDVKRIVEIAKACGADAIHPGYGFLSE---- 86 (478)
T ss_pred CHHHHHHHHHHHHcCCeEEEEECCCccCCcchhhcCEEEEcCCCchhcccCHHHHHHHHHHhCCCEEEECCCcccc----
Confidence 445666888999999998777664332 2211111 1234441 110 1 112211122111
Q ss_pred cCcHHHHHHHHhCCCeeeeChhhHHHHHHHHHHHHHHHHHhcCCCCCCCCc
Q 016918 232 RSTGAYKAILQSLPYIFVGKPERIGQIVSIVSEAAKLSLKKKGMHFPPWRK 282 (380)
Q Consensus 232 RpT~~Y~~ll~~LP~vFVG~~~rL~~iV~~mc~Aak~S~k~~Gm~lPPWRk 282 (380)
.....+.+..+--.|+|+......+..-= ..+|+.|++.|.++|||-.
T Consensus 87 --~~~~a~~~e~~Gi~~iGps~~~i~~~~DK-~~~k~~l~~~gIpvpp~~~ 134 (478)
T PRK08463 87 --NYEFAKAVEDAGIIFIGPKSEVIRKMGNK-NIARYLMKKNGIPIVPGTE 134 (478)
T ss_pred --CHHHHHHHHHCCCceecCCHHHHHhhCcH-HHHHHHHHHcCCCCCCCcc
Confidence 12345677778888899865544443332 5788889999999999854
No 22
>PRK08654 pyruvate carboxylase subunit A; Validated
Probab=24.23 E-value=1.3e+02 Score=31.86 Aligned_cols=46 Identities=17% Similarity=0.265 Sum_probs=31.5
Q ss_pred HHHHHHHhCCCeeeeChhhHHHHHHHHHHHHHHHHHhcCCCCCCCCc
Q 016918 236 AYKAILQSLPYIFVGKPERIGQIVSIVSEAAKLSLKKKGMHFPPWRK 282 (380)
Q Consensus 236 ~Y~~ll~~LP~vFVG~~~rL~~iV~~mc~Aak~S~k~~Gm~lPPWRk 282 (380)
...+.++.+--.|+|+....-.+..- =..+++-|++.|.++|||..
T Consensus 90 ~~a~~~e~~gi~~iGps~~~i~~~~D-K~~~k~~l~~~GVpv~p~~~ 135 (499)
T PRK08654 90 EFAKACEKAGIVFIGPSSDVIEAMGS-KINAKKLMKKAGVPVLPGTE 135 (499)
T ss_pred HHHHHHHHCCCcEECCCHHHHHHhCC-HHHHHHHHHHcCcCCCCCcC
Confidence 44567777777899976543332211 12478889999999999975
No 23
>cd00523 archeal_HJR Holliday junction resolvases (HJRs) are endonucleases that specifically resolve Holliday junction DNA intermediates during homologous recombination. HJR's occur in archaea, bacteria, and in the mitochondria of certain eukaryotes, however this CD includes only the archeal HJR's. The bacterial and archeal HJRs perform a similar function but differ in both sequence and structure. Structural similarity does however, exist between the archeal HJRs and type II restriction endonucleases, such as EcoRV, BglII, and Fok, and this similarity includes their active site configurations.
Probab=23.97 E-value=2.5e+02 Score=24.80 Aligned_cols=47 Identities=13% Similarity=0.238 Sum_probs=33.5
Q ss_pred HHHHHHHHhhCCCceEEEeecCCCCCCCCCCceeeEEEEeC--CeeEEEecCcccc
Q 016918 174 RKIVTDGLSSLGYDCSICKSKWDKCPSFPAGEYEYIDVIVK--GETLLVDIDFRSE 227 (380)
Q Consensus 174 rr~v~~~Lr~~GYdAaiCkSrW~~S~~~paG~heYIDV~~~--~~r~IVD~dFR~q 227 (380)
-+.++..|...||.+- ++..+++ |.+-.||++.. +.-++||+-.|..
T Consensus 9 E~~a~~~L~~~G~~vl----R~~~sG~---~~~~eiDIIA~~~~~lvfVEVK~r~~ 57 (123)
T cd00523 9 ERELVKILEEKGFAVV----RAPGSGG---GPRPLPDIVAGNGGTYLAIEVKSTKK 57 (123)
T ss_pred HHHHHHHHHhCCCEEE----EEcCCCC---CCCCceeEEEecCCEEEEEEEEecCC
Confidence 4668999999999887 2222222 33567899874 5778899988865
No 24
>PRK07178 pyruvate carboxylase subunit A; Validated
Probab=23.25 E-value=1.3e+02 Score=31.35 Aligned_cols=106 Identities=16% Similarity=0.240 Sum_probs=59.4
Q ss_pred hhhhHHHHHHHHhhCCCceEEEeecCCC-CCCCCCC----------ceeeEEE--EeC-----C-eeEEEecCccccccc
Q 016918 170 KDDLRKIVTDGLSSLGYDCSICKSKWDK-CPSFPAG----------EYEYIDV--IVK-----G-ETLLVDIDFRSEFEI 230 (380)
Q Consensus 170 ~~~lrr~v~~~Lr~~GYdAaiCkSrW~~-S~~~paG----------~heYIDV--~~~-----~-~r~IVD~dFR~qFeI 230 (380)
++.+...++..|+.+||...++-+.-+. +..+..- ...|+|+ ++. + ..++--..|-++
T Consensus 10 ~geia~~ii~a~~~~Gi~~v~v~~~~d~~a~~~~~aD~~~~i~~~~~~~y~d~~~i~~~a~~~~~D~I~pg~g~lse--- 86 (472)
T PRK07178 10 RGEIAVRIVRACAEMGIRSVAIYSEADRHALHVKRADEAYSIGADPLAGYLNPRRLVNLAVETGCDALHPGYGFLSE--- 86 (472)
T ss_pred CcHHHHHHHHHHHHcCCeEEEEeCCCccCCccHhhCCEEEEcCCCchhhhcCHHHHHHHHHHHCCCEEEeCCCCccc---
Confidence 3446667999999999999998776543 2221111 1234441 110 1 112211112111
Q ss_pred ccCcHHHHHHHHhCCCeeeeChhhHHHHHHHHHHHHHHHHHhcCCCCCCCCc
Q 016918 231 ARSTGAYKAILQSLPYIFVGKPERIGQIVSIVSEAAKLSLKKKGMHFPPWRK 282 (380)
Q Consensus 231 ARpT~~Y~~ll~~LP~vFVG~~~rL~~iV~~mc~Aak~S~k~~Gm~lPPWRk 282 (380)
. ....++++.+--.|+|.......+..= =..+|+-|++.|+++|||..
T Consensus 87 -~--~~~a~~~e~~Gi~~igps~~~i~~~~D-K~~~r~~l~~~GIp~pp~~~ 134 (472)
T PRK07178 87 -N--AELAEICAERGIKFIGPSAEVIRRMGD-KTEARRAMIKAGVPVTPGSE 134 (472)
T ss_pred -C--HHHHHHHHHcCCCccCCCHHHHHHhcC-HHHHHHHHHHCCCCCCCCcC
Confidence 1 234466777777788886654333321 23678889999999999963
No 25
>TIGR02144 LysX_arch Lysine biosynthesis enzyme LysX. The family of proteins found in this equivalog include the characterized LysX from Thermus thermophilus which is part of a well-organized lysine biosynthesis gene cluster. LysX is believed to carry out an ATP-dependent acylation of the amino group of alpha-aminoadipate in the prokaryotic version of the fungal AAA lysine biosynthesis pathway. No species having a sequence in this equivalog contains the elements of the more common diaminopimelate lysine biosythesis pathway, and none has been shown to be a lysine auxotroph. These sequences have mainly recieved the name of the related enzyme, "ribosomal protein S6 modification protein RimK". RimK has been characterized in E. coli, and acts by ATP-dependent condensation of S6 with glutamate residues.
Probab=22.17 E-value=6.4e+02 Score=23.49 Aligned_cols=41 Identities=20% Similarity=0.295 Sum_probs=28.5
Q ss_pred HHHHhCCCeeeeChhhHHHHHHHHHHH--HHHHHHhcCCCCCCCCcc
Q 016918 239 AILQSLPYIFVGKPERIGQIVSIVSEA--AKLSLKKKGMHFPPWRKA 283 (380)
Q Consensus 239 ~ll~~LP~vFVG~~~rL~~iV~~mc~A--ak~S~k~~Gm~lPPWRk~ 283 (380)
.++..+...+++.++ .+.+..+- +++-|++.|.++|||...
T Consensus 66 ~~le~~g~~~~n~~~----~~~~~~dK~~~~~~l~~~gip~P~t~~~ 108 (280)
T TIGR02144 66 RLLEALGVPVINSSH----VIEACGDKIFTYLKLAKAGVPTPRTYLA 108 (280)
T ss_pred HHHHHCCCcEECcHH----HHHHHhhHHHHHHHHHHCCcCCCCeEee
Confidence 456666655777754 44455554 677789999999999753
No 26
>PHA01753 Holliday junction resolvase
Probab=21.73 E-value=3.1e+02 Score=24.59 Aligned_cols=48 Identities=13% Similarity=0.121 Sum_probs=34.5
Q ss_pred hHHHHHHHHhhCCCceEEEeecCCCCCCCCCCceeeEEEEeC--CeeEEEecCcccc
Q 016918 173 LRKIVTDGLSSLGYDCSICKSKWDKCPSFPAGEYEYIDVIVK--GETLLVDIDFRSE 227 (380)
Q Consensus 173 lrr~v~~~Lr~~GYdAaiCkSrW~~S~~~paG~heYIDV~~~--~~r~IVD~dFR~q 227 (380)
--+.++..|+..|| .|-...|..+. .|-.||++.. +.-++||+-.|..
T Consensus 10 ~E~~a~~~L~~~G~--~il~rn~~~~~-----~~GEiDIIA~~~~~lvfVEVKtR~~ 59 (121)
T PHA01753 10 YEYKTLEILESNGF--KALRIPVSGTG-----KQALPDIIATKNNTIYPIEVKSTSK 59 (121)
T ss_pred HHHHHHHHHHHCCC--EEEEeccccCC-----CCCCccEEEeeCCEEEEEEEEeCCC
Confidence 34668899999999 45555664431 3557999874 5778899988865
No 27
>PF13837 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; PDB: 2EBI_A 2JMW_A.
Probab=20.64 E-value=54 Score=25.63 Aligned_cols=26 Identities=27% Similarity=0.684 Sum_probs=19.5
Q ss_pred hhhHHHHHHHHhhCCC--ceEEEeecCC
Q 016918 171 DDLRKIVTDGLSSLGY--DCSICKSKWD 196 (380)
Q Consensus 171 ~~lrr~v~~~Lr~~GY--dAaiCkSrW~ 196 (380)
..+=..|+..|...|| ++.-|+.||.
T Consensus 34 ~~~w~~Ia~~l~~~G~~rt~~qc~~Kw~ 61 (90)
T PF13837_consen 34 KKVWKEIAEELAEHGYNRTPEQCRNKWK 61 (90)
T ss_dssp HHHHHHHHHHHHHHC----HHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 3356679999999999 7788999994
Done!