Query 016918
Match_columns 380
No_of_seqs 162 out of 219
Neff 3.8
Searched_HMMs 29240
Date Mon Mar 25 05:57:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016918.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016918hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1e2t_A NAT, N-hydroxyarylamine 94.4 0.095 3.3E-06 49.7 7.8 55 173-227 75-131 (284)
2 1w4t_A Arylamine N-acetyltrans 93.8 0.12 4.2E-06 49.4 7.2 55 173-227 96-154 (299)
3 2bsz_A Arylamine N-acetyltrans 93.6 0.14 4.8E-06 48.4 7.2 55 173-227 76-133 (278)
4 2vfb_A Arylamine N-acetyltrans 92.4 0.21 7.1E-06 47.2 6.4 55 173-227 73-133 (280)
5 1w5r_A Arylamine N-acetyltrans 92.3 0.19 6.3E-06 47.5 6.0 55 173-227 76-136 (278)
6 3lnb_A N-acetyltransferase fam 91.6 0.26 8.9E-06 47.7 6.2 55 173-227 102-159 (309)
7 3d9w_A Putative acetyltransfer 91.5 0.29 9.9E-06 46.7 6.3 52 173-225 85-140 (293)
8 2ija_A Arylamine N-acetyltrans 88.6 0.74 2.5E-05 43.6 6.5 56 173-228 76-134 (295)
9 3vot_A L-amino acid ligase, BL 56.5 68 0.0023 30.5 10.2 37 175-211 18-54 (425)
10 3kd4_A Putative protease; stru 55.8 30 0.001 34.9 8.0 51 173-223 290-344 (506)
11 4eg0_A D-alanine--D-alanine li 45.7 22 0.00074 32.6 4.7 94 175-283 35-128 (317)
12 2ebi_A DNA binding protein GT- 31.7 14 0.00049 28.5 1.0 51 146-196 8-60 (86)
13 3ouz_A Biotin carboxylase; str 30.9 27 0.00092 33.7 2.9 104 171-281 15-138 (446)
14 1iow_A DD-ligase, DDLB, D-ALA\ 30.6 84 0.0029 27.8 5.9 94 175-283 24-117 (306)
15 3i12_A D-alanine-D-alanine lig 26.4 61 0.0021 30.6 4.4 47 236-283 115-161 (364)
No 1
>1e2t_A NAT, N-hydroxyarylamine O-acetyltransferase; acetyl COA dependent; 2.8A {Salmonella typhimurium} SCOP: d.3.1.5
Probab=94.41 E-value=0.095 Score=49.65 Aligned_cols=55 Identities=18% Similarity=0.343 Sum_probs=46.1
Q ss_pred hHHHHHHHHhhCCCceEEEeec--CCCCCCCCCCceeeEEEEeCCeeEEEecCcccc
Q 016918 173 LRKIVTDGLSSLGYDCSICKSK--WDKCPSFPAGEYEYIDVIVKGETLLVDIDFRSE 227 (380)
Q Consensus 173 lrr~v~~~Lr~~GYdAaiCkSr--W~~S~~~paG~heYIDV~~~~~r~IVD~dFR~q 227 (380)
+...+...|+++||++..+..+ |...+..++..|--+-|.+.+.+||||+.|=+.
T Consensus 75 lN~Lf~~~L~~LGF~V~~~~~rV~~~~~~~~~~~~H~~l~V~idg~~ylvDVGFG~~ 131 (284)
T 1e2t_A 75 LNGLFERALRDIGFNVRSLLGRVILSHPASLPPRTHRLLLVDVEDEQWIADVGFGGQ 131 (284)
T ss_dssp HHHHHHHHHHHTTCCEEEEEEEECTTCCSSCCCSCEEEEEEEETTEEEEECSCSCTT
T ss_pred HHHHHHHHHHHCCCeEEEEEEEEecCCCCCCCCCccEEEEEEECCceEEEecCCCcc
Confidence 4677888999999999998764 655555567889999999999999999999873
No 2
>1w4t_A Arylamine N-acetyltransferase; 5- aminosalicylic acid, NAT, xenobiotic metabolism, acyltransferase; 1.95A {Pseudomonas aeruginosa} SCOP: d.3.1.5
Probab=93.78 E-value=0.12 Score=49.42 Aligned_cols=55 Identities=20% Similarity=0.357 Sum_probs=46.0
Q ss_pred hHHHHHHHHhhCCCceEEEeec--CCCCCCC--CCCceeeEEEEeCCeeEEEecCcccc
Q 016918 173 LRKIVTDGLSSLGYDCSICKSK--WDKCPSF--PAGEYEYIDVIVKGETLLVDIDFRSE 227 (380)
Q Consensus 173 lrr~v~~~Lr~~GYdAaiCkSr--W~~S~~~--paG~heYIDV~~~~~r~IVD~dFR~q 227 (380)
+...+...|+++||++..+..+ |...+.. ++..|-.+-|.+.+.+||||+.|=+.
T Consensus 96 lN~Lf~~~L~~LGF~V~~l~arV~~~~~~~~~~~~~~H~~l~V~idg~~ylvDVGFG~~ 154 (299)
T 1w4t_A 96 LNSLFARLLLALGYELELLVARVRWGLPDDAPLTQQSHLMLRLYLAEGEFLVDVGFGSA 154 (299)
T ss_dssp HHHHHHHHHHHTTCEEEEEEEEECTTCCTTSCCCCEEEEEEEEEETTEEEEECSCSGGG
T ss_pred HHHHHHHHHHHcCCeEEEEEEEEEeCCCCcCCCCCCccEEEEEEECCceEEEeCCCCCc
Confidence 4678888999999999998764 6555555 57889999999999999999999774
No 3
>2bsz_A Arylamine N-acetyltransferase 1; acyltransferase, complete proteome; 2.0A {Rhizobium loti} SCOP: d.3.1.5
Probab=93.63 E-value=0.14 Score=48.43 Aligned_cols=55 Identities=18% Similarity=0.373 Sum_probs=45.7
Q ss_pred hHHHHHHHHhhCCCceEEEeec--CCCCCCC-CCCceeeEEEEeCCeeEEEecCcccc
Q 016918 173 LRKIVTDGLSSLGYDCSICKSK--WDKCPSF-PAGEYEYIDVIVKGETLLVDIDFRSE 227 (380)
Q Consensus 173 lrr~v~~~Lr~~GYdAaiCkSr--W~~S~~~-paG~heYIDV~~~~~r~IVD~dFR~q 227 (380)
+...+...|+++||++..+..+ |...+.. ++..|--+-|.+.+.+||||+.|=+.
T Consensus 76 lN~Lf~~~L~~LGF~V~~~~arV~~~~~~~~~~~~~H~~l~V~idg~~ylvDVGFG~~ 133 (278)
T 2bsz_A 76 HNLLFMHALKALGFEVGGLAARVLWGQSEDAITARSHMLLRVELDGRTYIADVGFGGL 133 (278)
T ss_dssp HHHHHHHHHHHHTCEEEEEEEEECSSCCSSSSCCCCEEEEEEEETTEEEEECSCCSSS
T ss_pred HHHHHHHHHHHCCCeEEEEEEEEeeCCCCCCCCCCccEEEEEEECCceEEEeCCCCcc
Confidence 4678888999999999998764 6555554 46889999999999999999999874
No 4
>2vfb_A Arylamine N-acetyltransferase; NAT, acetyl COA, mycobacteria, actyltransferase; 2.00A {Mycobacterium marinum} PDB: 2vfc_A* 3ltw_A*
Probab=92.36 E-value=0.21 Score=47.22 Aligned_cols=55 Identities=25% Similarity=0.390 Sum_probs=46.0
Q ss_pred hHHHHHHHHhhCCCceEEEeec--CCCCCCC--CCCceeeEEEEeCCee--EEEecCcccc
Q 016918 173 LRKIVTDGLSSLGYDCSICKSK--WDKCPSF--PAGEYEYIDVIVKGET--LLVDIDFRSE 227 (380)
Q Consensus 173 lrr~v~~~Lr~~GYdAaiCkSr--W~~S~~~--paG~heYIDV~~~~~r--~IVD~dFR~q 227 (380)
+...+...|+++||++..+..+ |...+.. ++..|--+-|.+.+.+ ||||+.|=+.
T Consensus 73 lN~Lf~~~L~~LGF~V~~~~arV~~~~~~~~~~~~~~H~~l~V~idg~~~~ylvDVGFG~~ 133 (280)
T 2vfb_A 73 HNGLIGYVLAELGYRVRRLAGRVVWLAPPDAPTPAQTHTVLAVTFPGCQGPYLVDVGFGGM 133 (280)
T ss_dssp HHHHHHHHHHHHTCEEEEEEEEECTTCCTTSCCCCSCEEEEEEECTTCSSCEEECSCSGGG
T ss_pred HHHHHHHHHHHCCCeEEEEEEEEEeCCCCCCCCCCCCcEEEEEEECCeEEEEEEecCCCcc
Confidence 4677888999999999998764 6555555 4788999999999988 9999999874
No 5
>1w5r_A Arylamine N-acetyltransferase; acyltransferase; 1.45A {Mycobacterium smegmatis} SCOP: d.3.1.5 PDB: 1w6f_A* 1gx3_A
Probab=92.30 E-value=0.19 Score=47.53 Aligned_cols=55 Identities=24% Similarity=0.450 Sum_probs=45.9
Q ss_pred hHHHHHHHHhhCCCceEEEeec--CCCCCCC--CCCceeeEEEEeCCee--EEEecCcccc
Q 016918 173 LRKIVTDGLSSLGYDCSICKSK--WDKCPSF--PAGEYEYIDVIVKGET--LLVDIDFRSE 227 (380)
Q Consensus 173 lrr~v~~~Lr~~GYdAaiCkSr--W~~S~~~--paG~heYIDV~~~~~r--~IVD~dFR~q 227 (380)
+...+...|+++||++..+..+ |...+.. ++..|--+-|.+.+.+ ||||+.|=+.
T Consensus 76 lN~Lf~~~L~~LGF~V~~~~arV~~~~~~~~~~~~~~H~~l~V~idg~~~~ylvDVGFG~~ 136 (278)
T 1w5r_A 76 HNGLLGYVLEELGFEVERLSGRVVWMRADDAPLPAQTHNVLSVAVPGADGRYLVDVGFGGQ 136 (278)
T ss_dssp HHHHHHHHHHHHTCEEEEEEEEECTTCCTTCCCCCEEEEEEEEECSSCSCCEEECSCSCTT
T ss_pred HHHHHHHHHHHcCCeEEEEEEEEeeCCCCCCCCCCCccEEEEEEECCeEEEEEEecCCCcc
Confidence 4677888999999999998764 6655665 4788999999999988 9999999774
No 6
>3lnb_A N-acetyltransferase family protein; arylamine N-acetyltransferase, NAT, acetyltrans acyltransferase; HET: COA; 2.01A {Bacillus anthracis}
Probab=91.63 E-value=0.26 Score=47.72 Aligned_cols=55 Identities=15% Similarity=0.100 Sum_probs=45.1
Q ss_pred hHHHHHHHHhhCCCceEEEeec--CCCCCCC-CCCceeeEEEEeCCeeEEEecCcccc
Q 016918 173 LRKIVTDGLSSLGYDCSICKSK--WDKCPSF-PAGEYEYIDVIVKGETLLVDIDFRSE 227 (380)
Q Consensus 173 lrr~v~~~Lr~~GYdAaiCkSr--W~~S~~~-paG~heYIDV~~~~~r~IVD~dFR~q 227 (380)
+...+...|+++||++..+..+ |...+.. +.+.|--+-|.+.+.+||||+.|-..
T Consensus 102 lN~lf~~~L~~lGf~v~~~~arV~~~~~~~~~~~~~H~~l~V~~~g~~ylvDVGFG~~ 159 (309)
T 3lnb_A 102 LNSLLYYFLMDCGFQVYKVAGTVYDLYDNKWKPDDGHVIIILHHNKKDYVIDAGFASH 159 (309)
T ss_dssp HHHHHHHHHHHTTCEEEEEEEEEEETTTTEECSTTCEEEEEEEETTEEEEECSCSTTC
T ss_pred HHHHHHHHHHHcCCeEEEEeEEEecCCCCCCCCCCccEEEEEEECCeEEEEecCCCCc
Confidence 4778899999999999999875 3322332 56789999999999999999999875
No 7
>3d9w_A Putative acetyltransferase; arylamine N-acetyltransferase, NAT, X-RAY diffraction, acyltransferase; 2.70A {Nocardia farcinica}
Probab=91.49 E-value=0.29 Score=46.67 Aligned_cols=52 Identities=12% Similarity=0.240 Sum_probs=43.6
Q ss_pred hHHHHHHHHhhCCCceEEEeec--CCCCCCCCCCceeeEEE-EeC-CeeEEEecCcc
Q 016918 173 LRKIVTDGLSSLGYDCSICKSK--WDKCPSFPAGEYEYIDV-IVK-GETLLVDIDFR 225 (380)
Q Consensus 173 lrr~v~~~Lr~~GYdAaiCkSr--W~~S~~~paG~heYIDV-~~~-~~r~IVD~dFR 225 (380)
+...+...|+++||++..+..+ |.. +..++..|--+-| .+. |.+||||+.|=
T Consensus 85 lN~Lf~~~L~~LGF~V~~~~arV~~~~-~~~~~~~H~~l~V~~l~dg~~ylvDVGFG 140 (293)
T 3d9w_A 85 NAGLFAAALERLGFGVTGHTGRVTMGA-GGLRPATHALLRVTTADDDRVWMCDVGFG 140 (293)
T ss_dssp HHHHHHHHHHHTTCEEEEEEEEECTTC-CSCCCEEEEEEEEECSSCSCEEEECCSSS
T ss_pred HHHHHHHHHHHcCCeEEEEEEEEecCC-CCCCCCccEEEEEEEcCCCCeEEEecCCC
Confidence 4778899999999999998874 433 2456788999999 888 99999999998
No 8
>2ija_A Arylamine N-acetyltransferase 1; arylamide acetylase 1, structural genomics, structural genomics consortium, SGC; 1.70A {Homo sapiens} PDB: 2pqt_A* 2pfr_A*
Probab=88.63 E-value=0.74 Score=43.65 Aligned_cols=56 Identities=11% Similarity=0.262 Sum_probs=44.7
Q ss_pred hHHHHHHHHhhCCCceEEEeec--CCCCCCC-CCCceeeEEEEeCCeeEEEecCccccc
Q 016918 173 LRKIVTDGLSSLGYDCSICKSK--WDKCPSF-PAGEYEYIDVIVKGETLLVDIDFRSEF 228 (380)
Q Consensus 173 lrr~v~~~Lr~~GYdAaiCkSr--W~~S~~~-paG~heYIDV~~~~~r~IVD~dFR~qF 228 (380)
+...+...|+++||++..+..+ |...+.+ +...|--+-|.+.+.+||||+.|=...
T Consensus 76 lN~Lf~~~L~~LGF~V~~~~~rV~~~~~~~~~~~~~H~~l~V~idg~~ylvDVGFG~~~ 134 (295)
T 2ija_A 76 VNHLLYWALTTIGFETTMLGGYVYSTPAKKYSTGMIHLLLQVTIDGRNYIVDAGSGRSY 134 (295)
T ss_dssp HHHHHHHHHHHHTCEEEEEEEEEEETTTTEECSSCCEEEEEEEETTEEEEECSCCCGGG
T ss_pred HHHHHHHHHHHcCCcEEEEEEEEeeCCCCCCCCCCCcEEEEEEECCceEEEeCCCCCcc
Confidence 4678888999999999998764 3322333 357899999999999999999998765
No 9
>3vot_A L-amino acid ligase, BL00235; ATP-grAsp motif, ATP-binding; HET: ADP PG4; 1.80A {Bacillus licheniformis}
Probab=56.55 E-value=68 Score=30.47 Aligned_cols=37 Identities=8% Similarity=0.141 Sum_probs=24.1
Q ss_pred HHHHHHHhhCCCceEEEeecCCCCCCCCCCceeeEEE
Q 016918 175 KIVTDGLSSLGYDCSICKSKWDKCPSFPAGEYEYIDV 211 (380)
Q Consensus 175 r~v~~~Lr~~GYdAaiCkSrW~~S~~~paG~heYIDV 211 (380)
..|.+.++.+||.+.++.+..+.....-....+|+.+
T Consensus 18 ~~i~~aa~~lG~~vv~v~~~~~~~~~~~~~~d~~~~~ 54 (425)
T 3vot_A 18 PFIFEEAERLGLKVTFFYNSAEDFPGNLPAVERCVPL 54 (425)
T ss_dssp CHHHHHHHHTTCEEEEEEETTSCCCCSCTTEEEEEEE
T ss_pred HHHHHHHHHCCCEEEEEECCCcccccCHhhccEEEec
Confidence 4578889999999999887765543333333344433
No 10
>3kd4_A Putative protease; structural genomics, joint center for STR genomics, JCSG, protein structure initiative, PSI-2, hydrol; HET: MSE; 2.00A {Parabacteroides distasonis atcc 8503}
Probab=55.80 E-value=30 Score=34.88 Aligned_cols=51 Identities=10% Similarity=0.097 Sum_probs=41.2
Q ss_pred hHHHHHHHHhhCCCceEEEeecCCC----CCCCCCCceeeEEEEeCCeeEEEecC
Q 016918 173 LRKIVTDGLSSLGYDCSICKSKWDK----CPSFPAGEYEYIDVIVKGETLLVDID 223 (380)
Q Consensus 173 lrr~v~~~Lr~~GYdAaiCkSrW~~----S~~~paG~heYIDV~~~~~r~IVD~d 223 (380)
+...++..||++|..|..|--.-.. ...+|+..|-.+.|.++|..|++|+-
T Consensus 290 ~a~Ll~AllRa~GIpA~~v~~~t~~~~~~~~~lp~~nh~i~~v~~~g~~y~lDat 344 (506)
T 3kd4_A 290 IAQLLNVMLNAAGIPSEVLAVYPGHLDTDACGLAAIQTLAVKATVDGKDQYLSAS 344 (506)
T ss_dssp HHHHHHHHHHHTTCCEEEEEEEETTSCGGGCCSTTCCEEEEEEEETTEEEEESSS
T ss_pred HHHHHHHHHHHCCCCcEEEEEEcCCCCCccCCCCCCCEEEEEEEECCEEEEEecC
Confidence 3578899999999999988754322 24577779999999999999999993
No 11
>4eg0_A D-alanine--D-alanine ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.65A {Burkholderia ambifaria} PDB: 4egq_A 4egj_A
Probab=45.70 E-value=22 Score=32.57 Aligned_cols=94 Identities=16% Similarity=0.198 Sum_probs=53.2
Q ss_pred HHHHHHHhhCCCceEEEeecCCCCCCCCCCceeeEEEEeCCeeEEEecCcccccccccCcHHHHHHHHhCCCeeeeChhh
Q 016918 175 KIVTDGLSSLGYDCSICKSKWDKCPSFPAGEYEYIDVIVKGETLLVDIDFRSEFEIARSTGAYKAILQSLPYIFVGKPER 254 (380)
Q Consensus 175 r~v~~~Lr~~GYdAaiCkSrW~~S~~~paG~heYIDV~~~~~r~IVD~dFR~qFeIARpT~~Y~~ll~~LP~vFVG~~~r 254 (380)
+.|++.|+..||++.++-.+ . ..+.....+-+|+++. -+...|-- ....+.++..+---|+|....
T Consensus 35 ~~v~~al~~~g~~v~~i~~~--~-~~~~~l~~~~~D~v~~--------~~hg~~ge---~~~~~~~le~~gip~~g~~~~ 100 (317)
T 4eg0_A 35 RLVLQGLRDAGIDAHPFDPA--E-RPLSALKDEGFVRAFN--------ALHGGYGE---NGQIQGALDFYGIRYTGSGVL 100 (317)
T ss_dssp HHHHHHHHHTTCEEEEECTT--T-SCTTHHHHTTCCEEEE--------CCCSGGGT---SSHHHHHHHHHTCEESSCCHH
T ss_pred HHHHHHHHHCCCEEEEEeCC--C-chHHHhhhcCCCEEEE--------cCCCCCCc---hHHHHHHHHHcCCCeeCcCHH
Confidence 56888999999999998632 1 1111111112343321 11111110 123467888888888987643
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCCCcc
Q 016918 255 IGQIVSIVSEAAKLSLKKKGMHFPPWRKA 283 (380)
Q Consensus 255 L~~iV~~mc~Aak~S~k~~Gm~lPPWRk~ 283 (380)
...+.. ==..+++-|++.|+++|||+..
T Consensus 101 ~~~~~~-dK~~~k~~l~~~Gip~p~~~~~ 128 (317)
T 4eg0_A 101 GSALGL-DKFRTKLVWQQTGVPTPPFETV 128 (317)
T ss_dssp HHHHHH-CHHHHHHHHHHTTCCCCCEEEE
T ss_pred HHHHHh-CHHHHHHHHHHCCcCCCCEEEE
Confidence 322211 0135677899999999999854
No 12
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=31.73 E-value=14 Score=28.47 Aligned_cols=51 Identities=22% Similarity=0.308 Sum_probs=30.4
Q ss_pred CHHHHhHHHHHHHHHHhhcccCCChhhhHHHHHHHHhhCCCceEE--EeecCC
Q 016918 146 SVTERNLLADVAVIVDKNSKNHKRKDDLRKIVTDGLSSLGYDCSI--CKSKWD 196 (380)
Q Consensus 146 s~~Er~LLadV~~av~~~~~~~~~~~~lrr~v~~~Lr~~GYdAai--CkSrW~ 196 (380)
+..|..+|-++..-.+..-...+....+=..|+..|+..||+-+- |+.+|.
T Consensus 8 t~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~ 60 (86)
T 2ebi_A 8 VQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWR 60 (86)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 455555554444332211011124455677899999999997654 988884
No 13
>3ouz_A Biotin carboxylase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta fold, cytosol, LIG; HET: MSE ADP SRT TLA; 1.90A {Campylobacter jejuni subsp} PDB: 3ouu_A*
Probab=30.94 E-value=27 Score=33.67 Aligned_cols=104 Identities=15% Similarity=0.146 Sum_probs=55.9
Q ss_pred hhhHHHHHHHHhhCCCceEEEeecCCCCCCCCCCceeeEEEE--------------eC-----CeeEEE-ecCccccccc
Q 016918 171 DDLRKIVTDGLSSLGYDCSICKSKWDKCPSFPAGEYEYIDVI--------------VK-----GETLLV-DIDFRSEFEI 230 (380)
Q Consensus 171 ~~lrr~v~~~Lr~~GYdAaiCkSrW~~S~~~paG~heYIDV~--------------~~-----~~r~IV-D~dFR~qFeI 230 (380)
+.+...++..++.+||.+.++-+.-+....+..--.+++.+- .. +.-+|+ -.+|-++
T Consensus 15 g~~a~~i~~aa~~~G~~~v~v~~~~~~~~~~~~~ad~~~~i~~~~~~~~~~d~~~l~~~~~~~~~d~i~p~~g~~~e--- 91 (446)
T 3ouz_A 15 GEIALRALRTIKEMGKKAICVYSEADKDALYLKYADASICIGKARSSESYLNIPAIIAAAEIAEADAIFPGYGFLSE--- 91 (446)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEEGGGTTCTHHHHSSEEEEEECCTTTTGGGCHHHHHHHHHHHTCSEEECCSSTTTT---
T ss_pred CHHHHHHHHHHHHcCCEEEEEEcCcccccchHhhCCEEEEcCCCCccccccCHHHHHHHHHHhCcCEEEECCccccc---
Confidence 446677999999999998877554332111111112222220 00 111222 1222111
Q ss_pred ccCcHHHHHHHHhCCCeeeeChhhHHHHHHHHHHHHHHHHHhcCCCCCCCC
Q 016918 231 ARSTGAYKAILQSLPYIFVGKPERIGQIVSIVSEAAKLSLKKKGMHFPPWR 281 (380)
Q Consensus 231 ARpT~~Y~~ll~~LP~vFVG~~~rL~~iV~~mc~Aak~S~k~~Gm~lPPWR 281 (380)
...+.+.+..+--.|+|+......+..- =..+++-|++.|+++|||.
T Consensus 92 ---~~~~~~~~~~~g~~~~g~~~~~~~~~~d-K~~~~~~l~~~Gip~p~~~ 138 (446)
T 3ouz_A 92 ---NQNFVEICAKHNIKFIGPSVEAMNLMSD-KSKAKQVMQRAGVPVIPGS 138 (446)
T ss_dssp ---CHHHHHHHHHTTCEESSCCHHHHHHHHS-HHHHHHHHHHTTCCBCSBC
T ss_pred ---CHHHHHHHHHCCCceECcCHHHHHHhCC-HHHHHHHHHHcCCCcCCCc
Confidence 1345667777666688876443332211 1257788999999999996
No 14
>1iow_A DD-ligase, DDLB, D-ALA\:D-Ala ligase; glycogen phosphorylase, cell WALL, peptidoglycan synthesis, vancomycin, ADP binding; HET: ADP PHY; 1.90A {Escherichia coli} SCOP: c.30.1.2 d.142.1.1 PDB: 1iov_A* 2dln_A* 3v4z_A*
Probab=30.57 E-value=84 Score=27.76 Aligned_cols=94 Identities=15% Similarity=0.167 Sum_probs=50.3
Q ss_pred HHHHHHHhhCCCceEEEeecCCCCCCCCCCceeeEEEEeCCeeEEEecCcccccccccCcHHHHHHHHhCCCeeeeChhh
Q 016918 175 KIVTDGLSSLGYDCSICKSKWDKCPSFPAGEYEYIDVIVKGETLLVDIDFRSEFEIARSTGAYKAILQSLPYIFVGKPER 254 (380)
Q Consensus 175 r~v~~~Lr~~GYdAaiCkSrW~~S~~~paG~heYIDV~~~~~r~IVD~dFR~qFeIARpT~~Y~~ll~~LP~vFVG~~~r 254 (380)
+.|+..|+.+||++.++... +. . ......+-+|+++.. +...+.+ ...++.+++.+--.|+|....
T Consensus 24 ~~l~~al~~~G~~v~~~~~~-~~-~-~~~~~~~~~d~v~~~----~~~~~~e-------~~~~~~~~e~~g~~~~g~~~~ 89 (306)
T 1iow_A 24 AAVLAGLREGGIDAYPVDPK-EV-D-VTQLKSMGFQKVFIA----LHGRGGE-------DGTLQGMLELMGLPYTGSGVM 89 (306)
T ss_dssp HHHHHHHHHTTCEEEEECTT-TS-C-GGGTTTTTEEEEEEC----CCSTTTS-------SSHHHHHHHHHTCCBSSCCHH
T ss_pred HHHHHHHHHCCCeEEEEecC-ch-H-HHHhhccCCCEEEEc----CCCCCCc-------chHHHHHHHHcCCCccCCCHH
Confidence 56888999999999888643 11 0 000011224544311 1111111 113345676665557776433
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCCCcc
Q 016918 255 IGQIVSIVSEAAKLSLKKKGMHFPPWRKA 283 (380)
Q Consensus 255 L~~iV~~mc~Aak~S~k~~Gm~lPPWRk~ 283 (380)
...+.. ==..+++-|++.|+++|||+..
T Consensus 90 ~~~~~~-dK~~~~~~l~~~gi~~p~~~~~ 117 (306)
T 1iow_A 90 ASALSM-DKLRSKLLWQGAGLPVAPWVAL 117 (306)
T ss_dssp HHHHHH-CHHHHHHHHHHTTCCBCCEEEE
T ss_pred HHHHHc-CHHHHHHHHHHCCCCCCCeEEE
Confidence 222211 0124677789999999999764
No 15
>3i12_A D-alanine-D-alanine ligase A; D-alanyl-alanine synthetase A, ADP binding protein, csgid, A binding, cell shape; HET: ADP; 2.20A {Salmonella typhimurium} PDB: 3q1k_A*
Probab=26.38 E-value=61 Score=30.62 Aligned_cols=47 Identities=19% Similarity=0.324 Sum_probs=32.0
Q ss_pred HHHHHHHhCCCeeeeChhhHHHHHHHHHHHHHHHHHhcCCCCCCCCcc
Q 016918 236 AYKAILQSLPYIFVGKPERIGQIVSIVSEAAKLSLKKKGMHFPPWRKA 283 (380)
Q Consensus 236 ~Y~~ll~~LP~vFVG~~~rL~~iV~~mc~Aak~S~k~~Gm~lPPWRk~ 283 (380)
..+.+|..+---|+|..-.-..+. .==..+|+-|++.|+++|||+..
T Consensus 115 ~iq~~le~~gip~~G~~~~a~~~~-~DK~~~k~~l~~~Gip~p~~~~~ 161 (364)
T 3i12_A 115 SLQGMLRVANLPFVGSDVLSSAAC-MDKDVAKRLLRDAGLNIAPFITL 161 (364)
T ss_dssp HHHHHHHHTTCCBSSCCHHHHHHH-HCHHHHHHHHHHTTCCBCCEEEE
T ss_pred HHHHHHHHcCCCccCCCHHHHHHH-HCHHHHHHHHHHCCCCCCCEEEE
Confidence 467888888777899863322221 01135778899999999999843
Done!