BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016921
(380 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3BUS|A Chain A, Crystal Structure Of Rebm
pdb|3BUS|B Chain B, Crystal Structure Of Rebm
Length = 273
Score = 94.7 bits (234), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 58/178 (32%), Positives = 88/178 (49%), Gaps = 11/178 (6%)
Query: 97 EGIAEFYDESSSLWEDIWGDHMHHGFYE-PDSSVSVSDHRAAQVRMIEETLRFAGVSEDP 155
E + + YD+ + + IWG+++H G++E + VSV D A R+ +E + V
Sbjct: 7 EEVRQXYDDFTDPFARIWGENLHFGYWEDAGADVSVDD---ATDRLTDEXIALLDV---- 59
Query: 156 TKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVXXXXXXXXXXXXXXXDKVSFQVG 215
+ V+DVGCGIG + LA + GI++S ++V+F
Sbjct: 60 -RSGDRVLDVGCGIGKPAVRLATARDVRVTGISISRPQVNQANARATAAGLANRVTFSYA 118
Query: 216 DALQQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSE 273
DA PF D FD VW++ES H PD+ + + E ARV P GT+ I + LAP E
Sbjct: 119 DAXDLPFEDASFDAVWALESLHHXPDRGRALREXARVLRPGGTVAIADFVL--LAPVE 174
>pdb|2O57|A Chain A, Crystal Structure Of A Putative Sarcosine Dimethylglycine
Methyltransferase From Galdieria Sulphuraria
pdb|2O57|B Chain B, Crystal Structure Of A Putative Sarcosine Dimethylglycine
Methyltransferase From Galdieria Sulphuraria
pdb|2O57|C Chain C, Crystal Structure Of A Putative Sarcosine Dimethylglycine
Methyltransferase From Galdieria Sulphuraria
pdb|2O57|D Chain D, Crystal Structure Of A Putative Sarcosine Dimethylglycine
Methyltransferase From Galdieria Sulphuraria
Length = 297
Score = 79.7 bits (195), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 57/187 (30%), Positives = 84/187 (44%), Gaps = 16/187 (8%)
Query: 100 AEFY---DESSSLWEDIWG-DHMHHGFY-EPDSSVSVSDHRAAQVRMIE---ETLRFAGV 151
AE Y D+S + +WG + +H G Y EP V + R A +R E L GV
Sbjct: 23 AEIYYDDDDSDRFYFHVWGGEDIHVGLYKEP---VDQDEIREASLRTDEWLASELAXTGV 79
Query: 152 SEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVXXXXXXXXXXXXXXXDKVS 211
+R +D+G G GG++R+L +KFG + ++PV D ++
Sbjct: 80 ----LQRQAKGLDLGAGYGGAARFLVRKFGVSIDCLNIAPVQNKRNEEYNNQAGLADNIT 135
Query: 212 FQVGDALQQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAP 271
+ G L+ P D +D +WS ++ H PDK K E ARV P G I D
Sbjct: 136 VKYGSFLEIPCEDNSYDFIWSQDAFLHSPDKLKVFQECARVLKPRGVXAITDPXKED-GI 194
Query: 272 SEESLQP 278
+ S+QP
Sbjct: 195 DKSSIQP 201
>pdb|3UJ7|A Chain A, Phosphoethanolamine Methyltransferase From Plasmodium
Falciparum In Complex With Sam And Po4
pdb|3UJ7|B Chain B, Phosphoethanolamine Methyltransferase From Plasmodium
Falciparum In Complex With Sam And Po4
pdb|3UJ8|A Chain A, Phosphoethanolamine Methyltransferase From Plasmodium
Falciparum In Complex With Sinefungin And Po4
pdb|3UJ9|A Chain A, Phosphoethanolamine Methyltransferase From Plasmodium
Falciparum In Complex With Phosphocholine
pdb|3UJA|A Chain A, Phosphoethanolamine Methyltransferase From Plasmodium
Falciparum In Complex With Phosphoethanolamine
pdb|3UJB|A Chain A, Phosphoethanolamine Methyltransferase From Plasmodium
Falciparum In Complex With Sah And Phosphoethanolamine
pdb|3UJB|B Chain B, Phosphoethanolamine Methyltransferase From Plasmodium
Falciparum In Complex With Sah And Phosphoethanolamine
pdb|4FGZ|A Chain A, Crystal Structure Of Phosphoethanolamine Methyltransferase
From Plasmodium Falciparum In Complex With Amodiaquine
pdb|4FGZ|B Chain B, Crystal Structure Of Phosphoethanolamine Methyltransferase
From Plasmodium Falciparum In Complex With Amodiaquine
Length = 266
Score = 67.8 bits (164), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 39/172 (22%), Positives = 83/172 (48%), Gaps = 18/172 (10%)
Query: 162 VVDVGCGIGGSSRYLAKKFGAKCQGITLSPVXXXXXXXXXXXXXXXDKVSFQVGDALQQP 221
V+D+G G+GG Y+ +K+GA GI + +K+ F+ D L +
Sbjct: 59 VLDIGSGLGGGCMYINEKYGAHTHGI---DICSNIVNMANERVSGNNKIIFEANDILTKE 115
Query: 222 FPDGQFDLVWSMESGEH--MPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPW 279
FP+ FDL++S ++ H + +K+K + + P GT++I +C A +E+ W
Sbjct: 116 FPENNFDLIYSRDAILHLSLENKNKLFQKCYKWLKPTGTLLITDYC----ATEKEN---W 168
Query: 280 EQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAEDWSQNVAPFWPAVI 331
+ E + + Y + +Y +L + + +++ ++D ++ +W ++
Sbjct: 169 DDEFKEYVKQRKY--TLITVEEYADILTACNFKNVVSKD----LSDYWNQLL 214
>pdb|3UJD|A Chain A, Phosphoethanolamine Methyltransferase Mutant (Y19f) From
Plasmodium Falciparum In Complex With Phosphocholine
Length = 266
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 39/172 (22%), Positives = 83/172 (48%), Gaps = 18/172 (10%)
Query: 162 VVDVGCGIGGSSRYLAKKFGAKCQGITLSPVXXXXXXXXXXXXXXXDKVSFQVGDALQQP 221
V+D+G G+GG Y+ +K+GA GI + +K+ F+ D L +
Sbjct: 59 VLDIGSGLGGGCMYINEKYGAHTHGI---DICSNIVNMANERVSGNNKIIFEANDILTKE 115
Query: 222 FPDGQFDLVWSMESGEH--MPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPW 279
FP+ FDL++S ++ H + +K+K + + P GT++I +C A +E+ W
Sbjct: 116 FPENNFDLIYSRDAILHLSLENKNKLFQKCYKWLKPTGTLLITDYC----ATEKEN---W 168
Query: 280 EQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAEDWSQNVAPFWPAVI 331
+ E + + Y + +Y +L + + +++ ++D ++ +W ++
Sbjct: 169 DDEFKEYVKQRKY--TLITVEEYADILTACNFKNVVSKD----LSDYWNQLL 214
>pdb|3UJ6|A Chain A, Semet Phosphoethanolamine Methyltransferase From
Plasmodium Falciparum In Complex With Sam And Po4
Length = 266
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 40/172 (23%), Positives = 84/172 (48%), Gaps = 18/172 (10%)
Query: 162 VVDVGCGIGGSSRYLAKKFGAKCQGITLSPVXXXXXXXXXXXXXXXDKVSFQVGDALQQP 221
V+D+G G+GG Y+ +K+GA GI + +K+ F+ D L +
Sbjct: 59 VLDIGSGLGGGCXYINEKYGAHTHGI---DICSNIVNXANERVSGNNKIIFEANDILTKE 115
Query: 222 FPDGQFDLVWSMESGEH--MPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPW 279
FP+ FDL++S ++ H + +K+K + + P GT++I +C A +E+ W
Sbjct: 116 FPENNFDLIYSRDAILHLSLENKNKLFQKCYKWLKPTGTLLITDYC----ATEKEN---W 168
Query: 280 EQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAEDWSQNVAPFWPAVI 331
+ E + + Y + +Y +L + + +++ ++D ++ +W ++
Sbjct: 169 DDEFKEYVKQRKY--TLITVEEYADILTACNFKNVVSKD----LSDYWNQLL 214
>pdb|3UJC|A Chain A, Phosphoethanolamine Methyltransferase Mutant (H132a) From
Plasmodium Falciparum In Complex With Phosphocholine
Length = 266
Score = 65.5 bits (158), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 38/172 (22%), Positives = 82/172 (47%), Gaps = 18/172 (10%)
Query: 162 VVDVGCGIGGSSRYLAKKFGAKCQGITLSPVXXXXXXXXXXXXXXXDKVSFQVGDALQQP 221
V+D+G G+GG Y+ +K+GA GI + +K+ F+ D L +
Sbjct: 59 VLDIGSGLGGGCMYINEKYGAHTHGI---DICSNIVNMANERVSGNNKIIFEANDILTKE 115
Query: 222 FPDGQFDLVWSMES--GEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPW 279
FP+ FDL++S ++ + +K+K + + P GT++I +C A +E+ W
Sbjct: 116 FPENNFDLIYSRDAILALSLENKNKLFQKCYKWLKPTGTLLITDYC----ATEKEN---W 168
Query: 280 EQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAEDWSQNVAPFWPAVI 331
+ E + + Y + +Y +L + + +++ ++D ++ +W ++
Sbjct: 169 DDEFKEYVKQRKY--TLITVEEYADILTACNFKNVVSKD----LSDYWNQLL 214
>pdb|3VC1|A Chain A, Crystal Structure Of Geranyl Diphosphate
C-Methyltransferase From Streptomyces Coelicolor A3(2)
In Complex With Mg2+, Geranyl-S- Thiolodiphosphate, And
S-Adenosyl-L-Homocysteine
pdb|3VC1|B Chain B, Crystal Structure Of Geranyl Diphosphate
C-Methyltransferase From Streptomyces Coelicolor A3(2)
In Complex With Mg2+, Geranyl-S- Thiolodiphosphate, And
S-Adenosyl-L-Homocysteine
pdb|3VC1|C Chain C, Crystal Structure Of Geranyl Diphosphate
C-Methyltransferase From Streptomyces Coelicolor A3(2)
In Complex With Mg2+, Geranyl-S- Thiolodiphosphate, And
S-Adenosyl-L-Homocysteine
pdb|3VC1|D Chain D, Crystal Structure Of Geranyl Diphosphate
C-Methyltransferase From Streptomyces Coelicolor A3(2)
In Complex With Mg2+, Geranyl-S- Thiolodiphosphate, And
S-Adenosyl-L-Homocysteine
pdb|3VC1|E Chain E, Crystal Structure Of Geranyl Diphosphate
C-Methyltransferase From Streptomyces Coelicolor A3(2)
In Complex With Mg2+, Geranyl-S- Thiolodiphosphate, And
S-Adenosyl-L-Homocysteine
pdb|3VC1|F Chain F, Crystal Structure Of Geranyl Diphosphate
C-Methyltransferase From Streptomyces Coelicolor A3(2)
In Complex With Mg2+, Geranyl-S- Thiolodiphosphate, And
S-Adenosyl-L-Homocysteine
pdb|3VC1|G Chain G, Crystal Structure Of Geranyl Diphosphate
C-Methyltransferase From Streptomyces Coelicolor A3(2)
In Complex With Mg2+, Geranyl-S- Thiolodiphosphate, And
S-Adenosyl-L-Homocysteine
pdb|3VC1|H Chain H, Crystal Structure Of Geranyl Diphosphate
C-Methyltransferase From Streptomyces Coelicolor A3(2)
In Complex With Mg2+, Geranyl-S- Thiolodiphosphate, And
S-Adenosyl-L-Homocysteine
pdb|3VC1|I Chain I, Crystal Structure Of Geranyl Diphosphate
C-Methyltransferase From Streptomyces Coelicolor A3(2)
In Complex With Mg2+, Geranyl-S- Thiolodiphosphate, And
S-Adenosyl-L-Homocysteine
pdb|3VC1|J Chain J, Crystal Structure Of Geranyl Diphosphate
C-Methyltransferase From Streptomyces Coelicolor A3(2)
In Complex With Mg2+, Geranyl-S- Thiolodiphosphate, And
S-Adenosyl-L-Homocysteine
pdb|3VC1|K Chain K, Crystal Structure Of Geranyl Diphosphate
C-Methyltransferase From Streptomyces Coelicolor A3(2)
In Complex With Mg2+, Geranyl-S- Thiolodiphosphate, And
S-Adenosyl-L-Homocysteine
pdb|3VC1|L Chain L, Crystal Structure Of Geranyl Diphosphate
C-Methyltransferase From Streptomyces Coelicolor A3(2)
In Complex With Mg2+, Geranyl-S- Thiolodiphosphate, And
S-Adenosyl-L-Homocysteine
pdb|3VC2|A Chain A, Crystal Structure Of Geranyl Diphosphate
C-Methyltransferase From Streptomyces Coelicolor A3(2)
In Complex With Mg2+, Geranyl Diphosphate, And
S-Adenosyl-L-Homocysteine
pdb|3VC2|B Chain B, Crystal Structure Of Geranyl Diphosphate
C-Methyltransferase From Streptomyces Coelicolor A3(2)
In Complex With Mg2+, Geranyl Diphosphate, And
S-Adenosyl-L-Homocysteine
pdb|3VC2|C Chain C, Crystal Structure Of Geranyl Diphosphate
C-Methyltransferase From Streptomyces Coelicolor A3(2)
In Complex With Mg2+, Geranyl Diphosphate, And
S-Adenosyl-L-Homocysteine
pdb|3VC2|D Chain D, Crystal Structure Of Geranyl Diphosphate
C-Methyltransferase From Streptomyces Coelicolor A3(2)
In Complex With Mg2+, Geranyl Diphosphate, And
S-Adenosyl-L-Homocysteine
pdb|3VC2|E Chain E, Crystal Structure Of Geranyl Diphosphate
C-Methyltransferase From Streptomyces Coelicolor A3(2)
In Complex With Mg2+, Geranyl Diphosphate, And
S-Adenosyl-L-Homocysteine
pdb|3VC2|F Chain F, Crystal Structure Of Geranyl Diphosphate
C-Methyltransferase From Streptomyces Coelicolor A3(2)
In Complex With Mg2+, Geranyl Diphosphate, And
S-Adenosyl-L-Homocysteine
pdb|3VC2|G Chain G, Crystal Structure Of Geranyl Diphosphate
C-Methyltransferase From Streptomyces Coelicolor A3(2)
In Complex With Mg2+, Geranyl Diphosphate, And
S-Adenosyl-L-Homocysteine
pdb|3VC2|H Chain H, Crystal Structure Of Geranyl Diphosphate
C-Methyltransferase From Streptomyces Coelicolor A3(2)
In Complex With Mg2+, Geranyl Diphosphate, And
S-Adenosyl-L-Homocysteine
pdb|3VC2|I Chain I, Crystal Structure Of Geranyl Diphosphate
C-Methyltransferase From Streptomyces Coelicolor A3(2)
In Complex With Mg2+, Geranyl Diphosphate, And
S-Adenosyl-L-Homocysteine
pdb|3VC2|J Chain J, Crystal Structure Of Geranyl Diphosphate
C-Methyltransferase From Streptomyces Coelicolor A3(2)
In Complex With Mg2+, Geranyl Diphosphate, And
S-Adenosyl-L-Homocysteine
pdb|3VC2|K Chain K, Crystal Structure Of Geranyl Diphosphate
C-Methyltransferase From Streptomyces Coelicolor A3(2)
In Complex With Mg2+, Geranyl Diphosphate, And
S-Adenosyl-L-Homocysteine
pdb|3VC2|L Chain L, Crystal Structure Of Geranyl Diphosphate
C-Methyltransferase From Streptomyces Coelicolor A3(2)
In Complex With Mg2+, Geranyl Diphosphate, And
S-Adenosyl-L-Homocysteine
Length = 312
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 54/231 (23%), Positives = 87/231 (37%), Gaps = 19/231 (8%)
Query: 120 HGFYEPDSSVSVSDHRAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKK 179
H YE + +AQ + + L AG + +VD GCG GGS ++
Sbjct: 86 HSEYEKKVIAELHRLESAQAEFLMDHLGQAGPDD-------TLVDAGCGRGGSMVMAHRR 138
Query: 180 FGAKCQGITLSPVXXXXXXXXXXXXXXXDKVSFQVGDALQQPFPDGQFDLVWSMESGEHM 239
FG++ +G+TLS D V +V + L PF G W+ ES ++
Sbjct: 139 FGSRVEGVTLSAAQADFGNRRARELRIDDHVRSRVCNMLDTPFDKGAVTASWNNESTMYV 198
Query: 240 PDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCST 299
D SE +R G + +T C P W ++ +A++ S
Sbjct: 199 -DLHDLFSEHSRFLKVGGRYVTITGC---WNPRYGQPSKWVSQI-----NAHFECNIHSR 249
Query: 300 ADYVKLLQSLSLEDIKAEDWSQNVAPFWPAVIHSALTW---KGFTSLLRTG 347
+Y++ + L D + + P+W S+L K F R G
Sbjct: 250 REYLRAMADNRLVPHTIVDLTPDTLPYWELRATSSLVTGIEKAFIESYRDG 300
>pdb|4F84|A Chain A, Structure Analysis Of Geranyl Diphosphate
Methyltransferase In Complex With Sam
pdb|4F85|A Chain A, Structure Analysis Of Geranyl Diphosphate
Methyltransferase
pdb|4F86|A Chain A, Structure Analysis Of Geranyl Diphosphate
Methyltransferase In Complex With Gpp And Sinefungin
pdb|4F86|B Chain B, Structure Analysis Of Geranyl Diphosphate
Methyltransferase In Complex With Gpp And Sinefungin
pdb|4F86|C Chain C, Structure Analysis Of Geranyl Diphosphate
Methyltransferase In Complex With Gpp And Sinefungin
pdb|4F86|D Chain D, Structure Analysis Of Geranyl Diphosphate
Methyltransferase In Complex With Gpp And Sinefungin
pdb|4F86|E Chain E, Structure Analysis Of Geranyl Diphosphate
Methyltransferase In Complex With Gpp And Sinefungin
pdb|4F86|F Chain F, Structure Analysis Of Geranyl Diphosphate
Methyltransferase In Complex With Gpp And Sinefungin
pdb|4F86|G Chain G, Structure Analysis Of Geranyl Diphosphate
Methyltransferase In Complex With Gpp And Sinefungin
pdb|4F86|H Chain H, Structure Analysis Of Geranyl Diphosphate
Methyltransferase In Complex With Gpp And Sinefungin
pdb|4F86|I Chain I, Structure Analysis Of Geranyl Diphosphate
Methyltransferase In Complex With Gpp And Sinefungin
pdb|4F86|J Chain J, Structure Analysis Of Geranyl Diphosphate
Methyltransferase In Complex With Gpp And Sinefungin
pdb|4F86|K Chain K, Structure Analysis Of Geranyl Diphosphate
Methyltransferase In Complex With Gpp And Sinefungin
pdb|4F86|L Chain L, Structure Analysis Of Geranyl Diphosphate
Methyltransferase In Complex With Gpp And Sinefungin
Length = 320
Score = 54.7 bits (130), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 60/273 (21%), Positives = 95/273 (34%), Gaps = 41/273 (15%)
Query: 121 GFYEPDSSVSVSDHRAA--------QVRMIEETLRFAGVSED-------PTKRPKNVVDV 165
G Y + DH A + R+I E R + P +VD
Sbjct: 73 GLYHHHYGIGAVDHAALGDPGDGGYEARLIAELHRLESAQAEFLLDHLGPVGPGDTLVDA 132
Query: 166 GCGIGGSSRYLAKKFGAKCQGITLSPVXXXXXXXXXXXXXXXDKVSFQVGDALQQPFPDG 225
GCG GGS ++FG K +G+TLS D V +V + L PF G
Sbjct: 133 GCGRGGSMVMAHQRFGCKVEGVTLSAAQAEFGNRRARELGIDDHVRSRVCNMLDTPFEKG 192
Query: 226 QFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLK 285
W+ ES ++ D +E +R G + VT C P W ++
Sbjct: 193 TVAASWNNESSMYV-DLHDVFAEHSRFLRVGGRYVTVTGC---WNPRYGQPSKWVSQI-- 246
Query: 286 KICDAYYLPAWCSTADYVKLLQSLSLEDIKAEDWSQNVAPFWPAVIHSALTWKGFTSLLR 345
+A++ S +Y++ + L D + P+W TS L
Sbjct: 247 ---NAHFECNIHSRREYLRAMADNRLVPQTVVDLTPETLPYWELRA---------TSSLV 294
Query: 346 TGLKTIKGALAMPLMIEGYQKNLIKFAIITCRK 378
TG++ IE Y+ ++ +I +
Sbjct: 295 TGIEEA--------FIESYRDGSFQYVLIAADR 319
>pdb|1VE3|A Chain A, Crystal Structure Of Ph0226 Protein From Pyrococcus
Horikoshii Ot3
pdb|1VE3|B Chain B, Crystal Structure Of Ph0226 Protein From Pyrococcus
Horikoshii Ot3
Length = 227
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 58/123 (47%), Gaps = 6/123 (4%)
Query: 157 KRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVXXXXXXXXXXXXXXXDKVSFQVGD 216
K+ V+D+ CG+GG S +L + +G + G+ +S V F VGD
Sbjct: 37 KKRGKVLDLACGVGGFS-FLLEDYGFEVVGVDISE--DXIRKAREYAKSRESNVEFIVGD 93
Query: 217 ALQQPFPDGQFDLVWSMESGEHMP--DKSKFVSELARVTAPAGTIIIVTWCHRDLAPS-E 273
A + F D FD V ++S H + ++ E+ RV P+G I R+L P +
Sbjct: 94 ARKLSFEDKTFDYVIFIDSIVHFEPLELNQVFKEVRRVLKPSGKFIXYFTDLRELLPRLK 153
Query: 274 ESL 276
ESL
Sbjct: 154 ESL 156
>pdb|1VL5|A Chain A, Crystal Structure Of A Putative Methyltransferase (Bh2331)
From Bacillus Halodurans C-125 At 1.95 A Resolution
pdb|1VL5|B Chain B, Crystal Structure Of A Putative Methyltransferase (Bh2331)
From Bacillus Halodurans C-125 At 1.95 A Resolution
pdb|1VL5|C Chain C, Crystal Structure Of A Putative Methyltransferase (Bh2331)
From Bacillus Halodurans C-125 At 1.95 A Resolution
pdb|1VL5|D Chain D, Crystal Structure Of A Putative Methyltransferase (Bh2331)
From Bacillus Halodurans C-125 At 1.95 A Resolution
Length = 260
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 51/104 (49%), Gaps = 6/104 (5%)
Query: 209 KVSFQVGDALQQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRD 268
+V + GDA Q PF D +F +V + H P+ + FVSE RV G +++V +
Sbjct: 86 QVEYVQGDAEQXPFTDERFHIVTCRIAAHHFPNPASFVSEAYRVLKKGGQLLLVD----N 141
Query: 269 LAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLE 312
AP ++ + ++K D + AW +D++K L+ E
Sbjct: 142 SAPENDAFDVF-YNYVEKERDYSHHRAW-KKSDWLKXLEEAGFE 183
>pdb|1XXL|A Chain A, The Crystal Structure Of Ycgj Protein From Bacillus
Subitilis At 2.1 A Resolution
pdb|1XXL|B Chain B, The Crystal Structure Of Ycgj Protein From Bacillus
Subitilis At 2.1 A Resolution
pdb|2GLU|A Chain A, The Crystal Structure Of Ycgj Protein From Bacillus
Subitilis
pdb|2GLU|B Chain B, The Crystal Structure Of Ycgj Protein From Bacillus
Subitilis
Length = 239
Score = 45.1 bits (105), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 45/101 (44%), Gaps = 2/101 (1%)
Query: 162 VVDVGCGIGGSSRYLAKKFGAKCQGITLSPVXXXXXXXXXXXXXXXDKVSFQVGDALQQP 221
V+D+G G G ++ + + +C G+ + + V FQ G A P
Sbjct: 25 VLDIGAGAGHTALAFSP-YVQECIGVDATK-EXVEVASSFAQEKGVENVRFQQGTAESLP 82
Query: 222 FPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIV 262
FPD FD++ + H D K V E+ARV G ++V
Sbjct: 83 FPDDSFDIITCRYAAHHFSDVRKAVREVARVLKQDGRFLLV 123
>pdb|3MGG|A Chain A, Crystal Structure Of Methyl Transferase From
Methanosarcina Mazei
pdb|3MGG|B Chain B, Crystal Structure Of Methyl Transferase From
Methanosarcina Mazei
Length = 276
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 44/106 (41%), Gaps = 2/106 (1%)
Query: 162 VVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVXXXXXXXXXXXXXXXDKVSFQVGDALQQ 220
V++ GCGIG + LAK A+ I +SP + V F +
Sbjct: 41 VLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNGIKN-VKFLQANIFSL 99
Query: 221 PFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCH 266
PF D FD ++ EH+ + + L +V P GTI ++ H
Sbjct: 100 PFEDSSFDHIFVCFVLEHLQSPEEALKSLKKVLKPGGTITVIEGDH 145
>pdb|3F4K|A Chain A, Crystal Structure Of A Probable Methyltransferase From
Bacteroides Thetaiotaomicron. Northeast Structural
Genomics Target Btr309
Length = 257
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 30/71 (42%)
Query: 162 VVDVGCGIGGSSRYLAKKFGAKCQGITLSPVXXXXXXXXXXXXXXXDKVSFQVGDALQQP 221
+ D+GCG GG + +LA + GI L P D+V G P
Sbjct: 50 IADIGCGTGGQTLFLADYVKGQITGIDLFPDFIEIFNENAVKANCADRVKGITGSMDNLP 109
Query: 222 FPDGQFDLVWS 232
F + + DL+WS
Sbjct: 110 FQNEELDLIWS 120
>pdb|3SVZ|A Chain A, Crystal Structure Of Apo Bt_2972, A Methyltransferase From
Bacteroides Thetaiotaomicron
pdb|3SVZ|B Chain B, Crystal Structure Of Apo Bt_2972, A Methyltransferase From
Bacteroides Thetaiotaomicron
pdb|3SXJ|A Chain A, Crystal Structure Of Complex Of Bt_2972 And Adomet, A
Methyltransferase From Bacteroides Thetaiotaomicron
pdb|3SXJ|B Chain B, Crystal Structure Of Complex Of Bt_2972 And Adomet, A
Methyltransferase From Bacteroides Thetaiotaomicron
pdb|3T0I|A Chain A, Crystal Structure Of Complex Of Bt_2972 And Adohcy, A
Methyltransferase From Bacteroides Thetaiotaomicron
pdb|3T0I|B Chain B, Crystal Structure Of Complex Of Bt_2972 And Adohcy, A
Methyltransferase From Bacteroides Thetaiotaomicron
Length = 263
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 30/71 (42%)
Query: 162 VVDVGCGIGGSSRYLAKKFGAKCQGITLSPVXXXXXXXXXXXXXXXDKVSFQVGDALQQP 221
+ D+GCG GG + +LA + GI L P D+V G P
Sbjct: 56 IADIGCGTGGQTLFLADYVKGQITGIDLFPDFIEIFNENAVKANCADRVKGITGSMDNLP 115
Query: 222 FPDGQFDLVWS 232
F + + DL+WS
Sbjct: 116 FQNEELDLIWS 126
>pdb|3DH0|A Chain A, Crystal Structure Of A Sam Dependent Methyltransferase
From Aquifex Aeolicus
pdb|3DH0|B Chain B, Crystal Structure Of A Sam Dependent Methyltransferase
From Aquifex Aeolicus
Length = 219
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 41/170 (24%), Positives = 67/170 (39%), Gaps = 17/170 (10%)
Query: 123 YEPDSSVSVSDHRAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGA 182
++P + D ++ E+ L+ G+ E T V+DVG G G YL+K G
Sbjct: 7 FDPSKIKKLDDPSRLELFDPEKVLKEFGLKEGMT-----VLDVGTGAGFYLPYLSKMVGE 61
Query: 183 KCQGITLSPVXXXXXXXXXXXXXXXDKVSFQVGDALQQ-----PFPDGQFDLVWSMESGE 237
K + + +K+ + + L+ P PD D ++ +
Sbjct: 62 KGKVYAID----VQEEMVNYAWEKVNKLGLKNVEVLKSEENKIPLPDNTVDFIFMAFTFH 117
Query: 238 HMPDKSKFVSELARVTAPAGTIIIVTWC--HRDLA-PSEESLQPWEQELL 284
+ + KF+ EL RV P + I+ W RD P EE WE L+
Sbjct: 118 ELSEPLKFLEELKRVAKPFAYLAIIDWKKEERDKGPPPEEVYSEWEVGLI 167
>pdb|3I9F|A Chain A, Crystal Structure Of A Putative Type 11 Methyltransferase
From Sulfolobus Solfataricus
pdb|3I9F|B Chain B, Crystal Structure Of A Putative Type 11 Methyltransferase
From Sulfolobus Solfataricus
Length = 170
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 41/105 (39%), Gaps = 14/105 (13%)
Query: 162 VVDVGCGIGGSSRYLAKKFGAKCQGITLSPVXXXXXXXXXXXXXXXDKVSFQVGDALQQP 221
+VD GCG G +YL + F K I ++ + K F L P
Sbjct: 21 IVDYGCGNGFYCKYLLE-FATKLYCIDINVIALKEV-----------KEKFDSVITLSDP 68
Query: 222 --FPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264
PD D + S M DK +SE+ R+ G +II+ W
Sbjct: 69 KEIPDNSVDFILFANSFHDMDDKQHVISEVKRILKDDGRVIIIDW 113
>pdb|3L8D|A Chain A, Crystal Structure Of Methyltransferase From Bacillus
Thuringiensis
Length = 242
Score = 37.7 bits (86), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 49/110 (44%), Gaps = 5/110 (4%)
Query: 153 EDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVXXXXXXXXXXXXXXXDKVSF 212
E K+ V+DVGCG G + L++ G K G+ +S V +SF
Sbjct: 48 EQYVKKEAEVLDVGCGDGYGTYKLSRT-GYKAVGVDISEVXIQKGKERGEGP----DLSF 102
Query: 213 QVGDALQQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIV 262
GD PF + QF+ + ++ S E + + ++E+ RV G I
Sbjct: 103 IKGDLSSLPFENEQFEAIXAINSLEWTEEPLRALNEIKRVLKSDGYACIA 152
>pdb|3E7P|A Chain A, Crystal Structure Of Of Putative Methyltransferase From
Bacteroides Vulgatus Atcc 8482
Length = 270
Score = 36.6 bits (83), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 27/71 (38%)
Query: 162 VVDVGCGIGGSSRYLAKKFGAKCQGITLSPVXXXXXXXXXXXXXXXDKVSFQVGDALQQP 221
+ D+GCG GG + LA+ K GI P ++V VG
Sbjct: 51 IADLGCGTGGQTMILAQHVPGKITGIDFFPGFIERFNKNAEKLNLQNRVKGIVGSMDDLS 110
Query: 222 FPDGQFDLVWS 232
F DL+WS
Sbjct: 111 FEKDSLDLIWS 121
>pdb|3T7R|A Chain A, Crystal Structure Of Apo Bvu_3255, A Methyltransferase
From Bacteroides Vulgatus Atcc 8482
pdb|3T7R|B Chain B, Crystal Structure Of Apo Bvu_3255, A Methyltransferase
From Bacteroides Vulgatus Atcc 8482
pdb|3T7S|A Chain A, Crystal Structure Of Complex Of Sam And Bvu_3255, A
Methyltransferase From Bacteroides Vulgatus Atcc 8482
pdb|3T7S|B Chain B, Crystal Structure Of Complex Of Sam And Bvu_3255, A
Methyltransferase From Bacteroides Vulgatus Atcc 8482
pdb|3T7S|C Chain C, Crystal Structure Of Complex Of Sam And Bvu_3255, A
Methyltransferase From Bacteroides Vulgatus Atcc 8482
pdb|3T7S|D Chain D, Crystal Structure Of Complex Of Sam And Bvu_3255, A
Methyltransferase From Bacteroides Vulgatus Atcc 8482
pdb|3T7T|A Chain A, Crystal Structure Of Complex Of Sah And Bvu_3255, A
Methyltransferase From Bacteroides Vulgatus Atcc 8482
pdb|3T7T|B Chain B, Crystal Structure Of Complex Of Sah And Bvu_3255, A
Methyltransferase From Bacteroides Vulgatus Atcc 8482
pdb|3T7T|C Chain C, Crystal Structure Of Complex Of Sah And Bvu_3255, A
Methyltransferase From Bacteroides Vulgatus Atcc 8482
pdb|3T7T|D Chain D, Crystal Structure Of Complex Of Sah And Bvu_3255, A
Methyltransferase From Bacteroides Vulgatus Atcc 8482
Length = 268
Score = 36.6 bits (83), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 27/71 (38%)
Query: 162 VVDVGCGIGGSSRYLAKKFGAKCQGITLSPVXXXXXXXXXXXXXXXDKVSFQVGDALQQP 221
+ D+GCG GG + LA+ K GI P ++V VG
Sbjct: 56 IADLGCGTGGQTMILAQHVPGKITGIDFFPGFIERFNKNAEKLNLQNRVKGIVGSMDDLS 115
Query: 222 FPDGQFDLVWS 232
F DL+WS
Sbjct: 116 FEKDSLDLIWS 126
>pdb|3KKZ|A Chain A, Crystal Structure Of The Q5les9_bacfn Protein From
Bacteroides Fragilis. Northeast Structural Genomics
Consortium Target Bfr250.
pdb|3KKZ|B Chain B, Crystal Structure Of The Q5les9_bacfn Protein From
Bacteroides Fragilis. Northeast Structural Genomics
Consortium Target Bfr250
Length = 267
Score = 36.2 bits (82), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 29/71 (40%)
Query: 162 VVDVGCGIGGSSRYLAKKFGAKCQGITLSPVXXXXXXXXXXXXXXXDKVSFQVGDALQQP 221
+ D+GCG GG + LA + G+ ++V+ VG P
Sbjct: 50 IADIGCGTGGQTXVLAGHVTGQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSXDDLP 109
Query: 222 FPDGQFDLVWS 232
F + + DL+WS
Sbjct: 110 FRNEELDLIWS 120
>pdb|3SM3|A Chain A, Crystal Structure Of Sam-Dependent Methyltransferases
Q8puk2_metma From Methanosarcina Mazei. Northeast
Structural Genomics Consortium Target Mar262
Length = 235
Score = 36.2 bits (82), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 44/110 (40%), Gaps = 8/110 (7%)
Query: 162 VVDVGCGIGGSSRYLAKKFGAKCQGITLSP----VXXXXXXXXXXXXXXXDKVSFQVGDA 217
++D+GCG G S LA K G GI ++ + K F+V +A
Sbjct: 34 ILDIGCGSGKISLELASK-GYSVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENA 92
Query: 218 LQQPFPDGQFDLVWSMESGEHMPD---KSKFVSELARVTAPAGTIIIVTW 264
F D FD +PD +S+ + E+ RV P + +V +
Sbjct: 93 SSLSFHDSSFDFAVMQAFLTSVPDPKERSRIIKEVFRVLKPGAYLYLVEF 142
>pdb|1WZN|A Chain A, Crystal Structure Of The Sam-Dependent Methyltransferase
From Pyrococcus Horikoshii Ot3
pdb|1WZN|B Chain B, Crystal Structure Of The Sam-Dependent Methyltransferase
From Pyrococcus Horikoshii Ot3
pdb|1WZN|C Chain C, Crystal Structure Of The Sam-Dependent Methyltransferase
From Pyrococcus Horikoshii Ot3
Length = 252
Score = 33.9 bits (76), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 52/127 (40%), Gaps = 12/127 (9%)
Query: 137 AQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVXXXX 196
A++ +EE + ED + + V+D+ CG G + LA++ G + G+ L
Sbjct: 25 AEIDFVEEIFK-----EDAKREVRRVLDLACGTGIPTLELAER-GYEVVGLDLHEEMLRV 78
Query: 197 XXXXXXXXXXXDKVSFQVGDALQQPFPDGQFDLVWSMESGEHMPDKS---KFVSELARVT 253
K+ F GD L+ F + +FD V S D+ K S++A
Sbjct: 79 ARRKAKERNL--KIEFLQGDVLEIAFKN-EFDAVTMFFSTIMYFDEEDLRKLFSKVAEAL 135
Query: 254 APAGTII 260
P G I
Sbjct: 136 KPGGVFI 142
>pdb|2GS9|A Chain A, Crystal Structure Of Tt1324 From Thermus Thermophilis Hb8
pdb|2GS9|B Chain B, Crystal Structure Of Tt1324 From Thermus Thermophilis Hb8
Length = 211
Score = 33.5 bits (75), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 46/102 (45%), Gaps = 20/102 (19%)
Query: 215 GDALQQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEE 274
G+AL PFP FD+V + E + D + + E RV P G +++ E
Sbjct: 86 GEAL--PFPGESFDVVLLFTTLEFVEDVERVLLEARRVLRPGGALVVGVL---------E 134
Query: 275 SLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKA 316
+L PW L +++ + LP W + L+ ED+KA
Sbjct: 135 ALSPW-AALYRRLGEKGVLP-WAQA-------RFLAREDLKA 167
>pdb|1G6Q|1 Chain 1, Crystal Structure Of Yeast Arginine Methyltransferase,
Hmt1
pdb|1G6Q|2 Chain 2, Crystal Structure Of Yeast Arginine Methyltransferase,
Hmt1
pdb|1G6Q|3 Chain 3, Crystal Structure Of Yeast Arginine Methyltransferase,
Hmt1
pdb|1G6Q|4 Chain 4, Crystal Structure Of Yeast Arginine Methyltransferase,
Hmt1
pdb|1G6Q|5 Chain 5, Crystal Structure Of Yeast Arginine Methyltransferase,
Hmt1
pdb|1G6Q|6 Chain 6, Crystal Structure Of Yeast Arginine Methyltransferase,
Hmt1
Length = 328
Score = 32.7 bits (73), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 5/65 (7%)
Query: 133 DHRAAQVRMIEETLRF-----AGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGI 187
DH M+++T+R A + + K V+DVGCG G S + AK G+
Sbjct: 8 DHYGIHEEMLQDTVRTLSYRNAIIQNKDLFKDKIVLDVGCGTGILSMFAAKHGAKHVIGV 67
Query: 188 TLSPV 192
+S +
Sbjct: 68 DMSSI 72
>pdb|2AVN|A Chain A, Crystal Structure Of A UbiquinoneMENAQUINONE BIOSYNTHESIS
Methyltransferase-Related Protein (Tm1389) From
Thermotoga Maritima Msb8 At 2.35 A Resolution
pdb|2AVN|B Chain B, Crystal Structure Of A UbiquinoneMENAQUINONE BIOSYNTHESIS
Methyltransferase-Related Protein (Tm1389) From
Thermotoga Maritima Msb8 At 2.35 A Resolution
Length = 260
Score = 32.3 bits (72), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 47/109 (43%), Gaps = 9/109 (8%)
Query: 153 EDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVXXXXXXXXXXXXXXXDKVSF 212
E+ K P V+D+G G G S +L ++ G + V V
Sbjct: 49 EEYLKNPCRVLDLGGGTGKWSLFLQER------GFEVVLVDPSKEXLEVAREKGVKNVVE 102
Query: 213 QVGDALQQPFPDGQFDLVWSM-ESGEHMPDKSKFVSELARVTAPAGTII 260
+ L PFP G F+ V ++ + ++ +K K SE+ RV P G +I
Sbjct: 103 AKAEDL--PFPSGAFEAVLALGDVLSYVENKDKAFSEIRRVLVPDGLLI 149
>pdb|1YCO|A Chain A, Crystal Structure Of A Branched-Chain Phosphotransacylase
From Enterococcus Faecalis V583
pdb|1YCO|B Chain B, Crystal Structure Of A Branched-Chain Phosphotransacylase
From Enterococcus Faecalis V583
Length = 279
Score = 32.0 bits (71), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 25/48 (52%)
Query: 229 LVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESL 276
L+ M EH +S +A V PAG ++T C ++AP++ +L
Sbjct: 83 LLKEMLKSEHQLKNKPILSHVAMVELPAGKTFLLTDCAMNIAPTQATL 130
>pdb|3BKW|A Chain A, Crystal Structure Of S-Adenosylmethionine Dependent
Methyltransferase (Np_104914.1) From Mesorhizobium Loti
At 1.60 A Resolution
pdb|3BKW|B Chain B, Crystal Structure Of S-Adenosylmethionine Dependent
Methyltransferase (Np_104914.1) From Mesorhizobium Loti
At 1.60 A Resolution
Length = 243
Score = 32.0 bits (71), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 21/103 (20%), Positives = 42/103 (40%), Gaps = 4/103 (3%)
Query: 161 NVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVXXXXXXXXXXXXXXXDKVSFQVGDALQQ 220
+VD+GCG G R+ + + G+ LS ++++ D +
Sbjct: 46 RIVDLGCGFGWFCRWAHEHGASYVLGLDLS----EKXLARARAAGPDTGITYERADLDKL 101
Query: 221 PFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVT 263
P FDL +S + ++ D ++ + + +P G + T
Sbjct: 102 HLPQDSFDLAYSSLALHYVEDVARLFRTVHQALSPGGHFVFST 144
>pdb|3QA8|A Chain A, Crystal Structure Of Inhibitor Of Kappa B Kinase Beta
pdb|3QA8|B Chain B, Crystal Structure Of Inhibitor Of Kappa B Kinase Beta
pdb|3QA8|C Chain C, Crystal Structure Of Inhibitor Of Kappa B Kinase Beta
pdb|3QA8|D Chain D, Crystal Structure Of Inhibitor Of Kappa B Kinase Beta
pdb|3QA8|E Chain E, Crystal Structure Of Inhibitor Of Kappa B Kinase Beta
pdb|3QA8|F Chain F, Crystal Structure Of Inhibitor Of Kappa B Kinase Beta
pdb|3QA8|G Chain G, Crystal Structure Of Inhibitor Of Kappa B Kinase Beta
pdb|3QA8|H Chain H, Crystal Structure Of Inhibitor Of Kappa B Kinase Beta
Length = 676
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 32/65 (49%), Gaps = 4/65 (6%)
Query: 266 HRDLAPSEESLQPWEQELLKKICDAYY---LPAWCSTADYVKLLQSLSLEDIKAEDWSQN 322
HRDL P LQP Q L+ KI D Y L ++V LQ L+ E ++ + ++
Sbjct: 144 HRDLKPENIVLQPGPQRLIHKIIDLGYAKELDQGELCTEFVGTLQYLAPELLEQKKYTVT 203
Query: 323 VAPFW 327
V +W
Sbjct: 204 VD-YW 207
>pdb|3RZF|A Chain A, Crystal Structure Of Inhibitor Of Kappab Kinase Beta
(I4122)
Length = 677
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 32/65 (49%), Gaps = 4/65 (6%)
Query: 266 HRDLAPSEESLQPWEQELLKKICDAYY---LPAWCSTADYVKLLQSLSLEDIKAEDWSQN 322
HRDL P LQP Q L+ KI D Y L ++V LQ L+ E ++ + ++
Sbjct: 145 HRDLKPENIVLQPGPQRLIHKIIDLGYAKELDQGELCTEFVGTLQYLAPELLEQKKYTVT 204
Query: 323 VAPFW 327
V +W
Sbjct: 205 VD-YW 208
>pdb|1RI1|A Chain A, Structure And Mechanism Of Mrna Cap (Guanine N-7)
Methyltransferase
pdb|1RI2|A Chain A, Structure And Mechanism Of Mrna Cap (guanine N-7)
Methyltransferase
pdb|1RI3|A Chain A, Structure And Mechanism Of Mrna Cap (Guanine N-7)
Methyltransferase
pdb|1RI4|A Chain A, Structure And Mechanism Of Mrna Cap (Guanine N-7)
Methyltransferase
pdb|1RI5|A Chain A, Structure And Mechanism Of Mrna Cap (Guanine N-7)
Methyltransferase
pdb|1Z3C|A Chain A, Encephalitozooan Cuniculi Mrna Cap (Guanine-N7)
Methyltransferasein Complexed With Azoadomet
pdb|2HV9|A Chain A, Encephalitozoon Cuniculi Mrna Cap (Guanine-N7)
Methyltransferase In Complex With Sinefungin
Length = 298
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 27/113 (23%), Positives = 46/113 (40%), Gaps = 5/113 (4%)
Query: 156 TKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVXXXXXXXXXXXXXXXDKVSFQVG 215
TKR +V+D+GCG GG + + G+ ++ V KV F+
Sbjct: 62 TKRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQ 121
Query: 216 DALQQPFPDG-QFDLVWSMESGEHMPDKSKFVS----ELARVTAPAGTIIIVT 263
D+ + G +FD++ S S + S+ + +AR P G I+
Sbjct: 122 DSYGRHMDLGKEFDVISSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTV 174
>pdb|3GDH|A Chain A, Methyltransferase Domain Of Human Trimethylguanosine
Synthase 1 (Tgs1) Bound To M7gtp And
Adenosyl-Homocysteine (Active Form)
pdb|3GDH|B Chain B, Methyltransferase Domain Of Human Trimethylguanosine
Synthase 1 (Tgs1) Bound To M7gtp And
Adenosyl-Homocysteine (Active Form)
pdb|3GDH|C Chain C, Methyltransferase Domain Of Human Trimethylguanosine
Synthase 1 (Tgs1) Bound To M7gtp And
Adenosyl-Homocysteine (Active Form)
Length = 241
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 24/57 (42%), Gaps = 1/57 (1%)
Query: 162 VVDVGCGIGGSSRYLAKKFGAKCQGITLSPVXXXXXXXXXXXXXXXDKVSFQVGDAL 218
VVD CG+GG++ A G + I + PV DK+ F GD L
Sbjct: 82 VVDAFCGVGGNTIQFALT-GMRVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFL 137
>pdb|3EGI|A Chain A, Methyltransferase Domain Of Human Trimethylguanosine
Synthase Tgs1 Bound To M7gpppa (Inactive Form)
pdb|3EGI|B Chain B, Methyltransferase Domain Of Human Trimethylguanosine
Synthase Tgs1 Bound To M7gpppa (Inactive Form)
pdb|3EGI|C Chain C, Methyltransferase Domain Of Human Trimethylguanosine
Synthase Tgs1 Bound To M7gpppa (Inactive Form)
pdb|3EGI|D Chain D, Methyltransferase Domain Of Human Trimethylguanosine
Synthase Tgs1 Bound To M7gpppa (Inactive Form)
Length = 206
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 24/57 (42%), Gaps = 1/57 (1%)
Query: 162 VVDVGCGIGGSSRYLAKKFGAKCQGITLSPVXXXXXXXXXXXXXXXDKVSFQVGDAL 218
VVD CG+GG++ A G + I + PV DK+ F GD L
Sbjct: 47 VVDAFCGVGGNTIQFALT-GXRVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFL 102
>pdb|3G5L|A Chain A, Crystal Structure Of Putative S-Adenosylmethionine
Dependent Methyltransferase From Listeria Monocytogenes
pdb|3G5L|B Chain B, Crystal Structure Of Putative S-Adenosylmethionine
Dependent Methyltransferase From Listeria Monocytogenes
Length = 253
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 18/36 (50%)
Query: 155 PTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLS 190
P K V+D+GCG G Y A+ K GI LS
Sbjct: 41 PDFNQKTVLDLGCGFGWHCIYAAEHGAKKVLGIDLS 76
>pdb|3B5I|A Chain A, Crystal Structure Of Indole-3-Acetic Acid
Methyltransferase
pdb|3B5I|B Chain B, Crystal Structure Of Indole-3-Acetic Acid
Methyltransferase
Length = 374
Score = 29.6 bits (65), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 15/65 (23%), Positives = 35/65 (53%), Gaps = 8/65 (12%)
Query: 126 DSSVSVSDHRAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSS--------RYLA 177
++S++ + H + + ++EETL ++ + P VD+GC G ++ ++++
Sbjct: 20 NNSLAQAMHARSMLHLLEETLENVHLNSSASPPPFTAVDLGCSSGANTVHIIDFIVKHIS 79
Query: 178 KKFGA 182
K+F A
Sbjct: 80 KRFDA 84
>pdb|1L1E|A Chain A, Crystal Structure Of Mycolic Acid Cyclopropane Synthase
Pcaa Complexed With S-Adenosyl-L-Homocysteine
pdb|1L1E|B Chain B, Crystal Structure Of Mycolic Acid Cyclopropane Synthase
Pcaa Complexed With S-Adenosyl-L-Homocysteine
Length = 287
Score = 29.3 bits (64), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 161 NVVDVGCGIGGSSRYLAKKFGAKCQGITLS 190
++D+GCG G + R +K+ G+TLS
Sbjct: 67 TLLDIGCGWGATMRRAIEKYDVNVVGLTLS 96
>pdb|2YXD|A Chain A, Crystal Structure Of Cobalamin Biosynthesis Precorrin 8w
Decarboxylase (Cbit)
pdb|2YXD|B Chain B, Crystal Structure Of Cobalamin Biosynthesis Precorrin 8w
Decarboxylase (Cbit)
Length = 183
Score = 28.9 bits (63), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 24/45 (53%)
Query: 135 RAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKK 179
R V + +E +R + + + VVDVGCG GG + +AK+
Sbjct: 12 RREGVPITKEEIRAVSIGKLNLNKDDVVVDVGCGSGGXTVEIAKR 56
>pdb|2FYT|A Chain A, Human Hmt1 Hnrnp Methyltransferase-Like 3 (S. Cerevisiae)
Protein
pdb|3SMQ|A Chain A, Crystal Structure Of Protein Arginine Methyltransferase 3
pdb|4HSG|A Chain A, Crystal Structure Of Human Prmt3 In Complex With An
Allosteric Inhibitor (Prmt3- Ktd)
Length = 340
Score = 28.5 bits (62), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 28/64 (43%), Gaps = 5/64 (7%)
Query: 134 HRAAQVRMIEETLRFAGVSEDPTKRP-----KNVVDVGCGIGGSSRYLAKKFGAKCQGIT 188
H M+++ +R + + P K V+DVGCG G S + AK K G+
Sbjct: 35 HYGIHEEMLKDKIRTESYRDFIYQNPHIFKDKVVLDVGCGTGILSMFAAKAGAKKVLGVD 94
Query: 189 LSPV 192
S +
Sbjct: 95 QSEI 98
>pdb|3DLC|A Chain A, Crystal Structure Of A Putative
S-Adenosyl-L-Methionine-Dependent Methyltransferase
(Mmp1179) From Methanococcus Maripaludis At 1.15 A
Resolution
Length = 219
Score = 28.5 bits (62), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 34/95 (35%)
Query: 163 VDVGCGIGGSSRYLAKKFGAKCQGITLSPVXXXXXXXXXXXXXXXDKVSFQVGDALQQPF 222
+D+G G G S LAK+ + + S D++ GD P
Sbjct: 48 IDIGSGPGALSIALAKQSDFSIRALDFSKHXNEIALKNIADANLNDRIQIVQGDVHNIPI 107
Query: 223 PDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAG 257
D DL+ S S D + E+ R+ G
Sbjct: 108 EDNYADLIVSRGSVFFWEDVATAFREIYRILKSGG 142
>pdb|1KPI|A Chain A, Crystal Structure Of Mycolic Acid Cyclopropane Synthase
Cmaa2 Complexed With Sah And Dddmab
pdb|3HEM|A Chain A, Structure Of Mycobacterium Tuberculosis Mycolic Acid
Cyclopropane Synthase Cmaa2 In Complex With Dioctylamine
Length = 302
Score = 28.5 bits (62), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 10/29 (34%), Positives = 18/29 (62%)
Query: 162 VVDVGCGIGGSSRYLAKKFGAKCQGITLS 190
++D+GCG G + R+ ++ G+TLS
Sbjct: 76 LLDIGCGWGSTMRHAVAEYDVNVIGLTLS 104
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.134 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,957,697
Number of Sequences: 62578
Number of extensions: 350339
Number of successful extensions: 933
Number of sequences better than 100.0: 44
Number of HSP's better than 100.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 886
Number of HSP's gapped (non-prelim): 48
length of query: 380
length of database: 14,973,337
effective HSP length: 101
effective length of query: 279
effective length of database: 8,652,959
effective search space: 2414175561
effective search space used: 2414175561
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)