Query 016921
Match_columns 380
No_of_seqs 401 out of 3662
Neff 9.2
Searched_HMMs 46136
Date Fri Mar 29 04:01:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016921.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016921hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02244 tocopherol O-methyltr 100.0 2.2E-40 4.7E-45 312.6 34.9 288 91-380 53-340 (340)
2 COG2226 UbiE Methylase involve 100.0 8.5E-31 1.8E-35 230.6 20.2 208 87-323 8-229 (238)
3 KOG1540 Ubiquinone biosynthesi 100.0 3E-30 6.5E-35 222.1 17.2 215 79-321 49-285 (296)
4 COG2230 Cfa Cyclopropane fatty 100.0 3.2E-28 7E-33 217.7 26.2 264 94-378 15-283 (283)
5 PF02353 CMAS: Mycolic acid cy 100.0 1.5E-28 3.2E-33 223.7 20.3 221 94-332 5-231 (273)
6 PF01209 Ubie_methyltran: ubiE 100.0 4.8E-30 1E-34 228.5 9.3 208 87-323 4-225 (233)
7 PTZ00098 phosphoethanolamine N 99.9 2.8E-26 6.1E-31 209.1 22.4 241 105-379 19-263 (263)
8 PLN02233 ubiquinone biosynthes 99.9 7E-25 1.5E-29 199.7 22.4 165 158-323 73-253 (261)
9 PRK11705 cyclopropane fatty ac 99.9 3.2E-23 7E-28 198.0 26.4 259 93-379 110-373 (383)
10 PLN02336 phosphoethanolamine N 99.9 7.1E-23 1.5E-27 202.9 25.3 220 142-379 255-475 (475)
11 PLN02396 hexaprenyldihydroxybe 99.9 1.7E-22 3.6E-27 187.7 22.5 157 158-320 131-291 (322)
12 TIGR02752 MenG_heptapren 2-hep 99.9 1E-22 2.2E-27 183.0 19.9 201 89-322 4-222 (231)
13 PRK05785 hypothetical protein; 99.9 7.2E-22 1.6E-26 176.0 19.6 198 88-323 7-216 (226)
14 PRK08317 hypothetical protein; 99.9 1.2E-20 2.5E-25 170.2 26.8 226 143-379 9-241 (241)
15 PRK11036 putative S-adenosyl-L 99.9 2.7E-22 5.9E-27 182.7 16.0 172 139-318 31-207 (255)
16 smart00828 PKS_MT Methyltransf 99.9 2.1E-21 4.6E-26 173.5 19.6 201 161-380 2-204 (224)
17 PRK14103 trans-aconitate 2-met 99.9 4.4E-21 9.4E-26 174.8 21.7 162 140-316 16-182 (255)
18 PRK00216 ubiE ubiquinone/menaq 99.9 4.2E-20 9E-25 166.7 21.4 165 159-323 52-230 (239)
19 PRK10258 biotin biosynthesis p 99.9 6.8E-20 1.5E-24 166.6 22.3 155 139-313 28-182 (251)
20 COG2227 UbiG 2-polyprenyl-3-me 99.9 5.9E-21 1.3E-25 165.2 13.9 152 158-320 59-217 (243)
21 PRK15068 tRNA mo(5)U34 methylt 99.8 8.1E-20 1.8E-24 170.9 19.5 156 159-322 123-278 (322)
22 TIGR01934 MenG_MenH_UbiE ubiqu 99.8 3E-19 6.5E-24 159.3 20.0 200 93-323 2-215 (223)
23 PLN02490 MPBQ/MSBQ methyltrans 99.8 1E-19 2.2E-24 169.7 17.3 146 158-321 113-259 (340)
24 PRK11873 arsM arsenite S-adeno 99.8 1.1E-18 2.4E-23 160.6 23.3 154 157-319 76-231 (272)
25 TIGR00452 methyltransferase, p 99.8 4.4E-19 9.6E-24 164.2 20.2 168 142-322 110-277 (314)
26 PRK01683 trans-aconitate 2-met 99.8 1.5E-18 3.3E-23 158.5 21.7 161 140-313 18-182 (258)
27 PRK15451 tRNA cmo(5)U34 methyl 99.8 6.7E-19 1.5E-23 159.4 18.5 152 158-315 56-227 (247)
28 KOG1270 Methyltransferases [Co 99.8 2.2E-19 4.9E-24 156.3 11.9 152 159-317 90-248 (282)
29 PF13489 Methyltransf_23: Meth 99.8 1.4E-19 3.1E-24 152.9 9.4 136 158-315 22-160 (161)
30 TIGR00740 methyltransferase, p 99.8 2.3E-18 5E-23 155.4 17.3 152 158-315 53-224 (239)
31 PF13847 Methyltransf_31: Meth 99.8 4.5E-19 9.7E-24 148.7 11.4 106 158-265 3-112 (152)
32 TIGR02072 BioC biotin biosynth 99.8 1.2E-17 2.6E-22 150.6 20.7 141 159-318 35-176 (240)
33 KOG4300 Predicted methyltransf 99.8 7.4E-19 1.6E-23 147.2 11.6 155 159-322 77-236 (252)
34 PRK11207 tellurite resistance 99.8 6.8E-18 1.5E-22 147.5 18.2 137 159-317 31-169 (197)
35 PF08241 Methyltransf_11: Meth 99.8 5.2E-19 1.1E-23 135.6 9.5 95 163-261 1-95 (95)
36 TIGR02716 C20_methyl_CrtF C-20 99.8 3.1E-17 6.8E-22 153.4 20.7 163 143-316 139-304 (306)
37 PF12847 Methyltransf_18: Meth 99.8 2.7E-18 5.8E-23 136.2 11.1 105 158-263 1-111 (112)
38 TIGR02021 BchM-ChlM magnesium 99.8 6.4E-17 1.4E-21 144.0 19.8 167 139-322 39-210 (219)
39 TIGR00477 tehB tellurite resis 99.8 3.7E-17 8.1E-22 142.6 17.0 138 159-319 31-170 (195)
40 COG4106 Tam Trans-aconitate me 99.8 1.8E-17 3.8E-22 140.1 14.2 162 140-314 17-182 (257)
41 PF08003 Methyltransf_9: Prote 99.7 3.1E-17 6.7E-22 147.2 14.7 155 159-321 116-270 (315)
42 PRK00107 gidB 16S rRNA methylt 99.7 2E-16 4.3E-21 136.2 19.2 146 134-321 26-172 (187)
43 PLN02585 magnesium protoporphy 99.7 7.7E-16 1.7E-20 142.8 21.6 201 92-320 86-301 (315)
44 PRK05134 bifunctional 3-demeth 99.7 6E-16 1.3E-20 139.1 19.3 157 158-320 48-207 (233)
45 PRK07580 Mg-protoporphyrin IX 99.7 9.8E-16 2.1E-20 137.4 20.4 151 158-322 63-218 (230)
46 PRK12335 tellurite resistance 99.7 4.9E-16 1.1E-20 143.8 17.1 137 159-318 121-259 (287)
47 TIGR01983 UbiG ubiquinone bios 99.7 1.1E-15 2.3E-20 136.7 17.9 153 158-320 45-205 (224)
48 TIGR00138 gidB 16S rRNA methyl 99.7 2.4E-15 5.1E-20 129.3 18.1 127 159-322 43-173 (181)
49 PLN02232 ubiquinone biosynthes 99.7 2.9E-16 6.3E-21 132.5 11.1 138 185-323 1-152 (160)
50 PF03848 TehB: Tellurite resis 99.7 2E-15 4.3E-20 129.2 14.9 137 159-318 31-169 (192)
51 TIGR03587 Pse_Me-ase pseudamin 99.7 2.7E-15 5.8E-20 131.5 15.0 99 159-266 44-145 (204)
52 PRK06202 hypothetical protein; 99.7 5.1E-15 1.1E-19 133.0 17.0 147 158-317 60-221 (232)
53 PF13649 Methyltransf_25: Meth 99.7 2.1E-16 4.6E-21 122.9 6.7 94 162-257 1-101 (101)
54 PRK08287 cobalt-precorrin-6Y C 99.6 1.3E-14 2.8E-19 125.9 18.2 126 159-320 32-158 (187)
55 PRK14967 putative methyltransf 99.6 2.9E-14 6.2E-19 127.2 20.8 132 159-323 37-189 (223)
56 TIGR02081 metW methionine bios 99.6 8E-15 1.7E-19 128.0 16.5 144 159-321 14-170 (194)
57 PF05401 NodS: Nodulation prot 99.6 3.2E-15 6.9E-20 126.3 12.8 125 159-309 44-171 (201)
58 PF08242 Methyltransf_12: Meth 99.6 6.7E-17 1.5E-21 125.2 2.3 96 163-259 1-99 (99)
59 PRK13944 protein-L-isoaspartat 99.6 7.5E-15 1.6E-19 129.1 15.1 112 141-263 60-173 (205)
60 TIGR00537 hemK_rel_arch HemK-r 99.6 2.2E-14 4.7E-19 123.6 17.6 130 159-323 20-170 (179)
61 PLN02336 phosphoethanolamine N 99.6 5E-15 1.1E-19 147.0 15.5 139 159-316 38-180 (475)
62 PLN03075 nicotianamine synthas 99.6 2E-14 4.3E-19 130.8 17.8 104 159-263 124-233 (296)
63 TIGR03840 TMPT_Se_Te thiopurin 99.6 2.6E-14 5.7E-19 125.8 17.4 141 159-320 35-189 (213)
64 PF07021 MetW: Methionine bios 99.6 9.6E-15 2.1E-19 123.2 13.5 148 158-323 13-172 (193)
65 smart00138 MeTrc Methyltransfe 99.6 6.5E-15 1.4E-19 134.2 13.3 106 158-263 99-242 (264)
66 TIGR02469 CbiT precorrin-6Y C5 99.6 2.4E-14 5.3E-19 115.3 14.9 111 144-263 10-122 (124)
67 PRK06922 hypothetical protein; 99.6 1.2E-14 2.5E-19 143.8 15.5 105 159-265 419-539 (677)
68 PRK04266 fibrillarin; Provisio 99.6 4.3E-14 9.3E-19 125.4 16.7 135 158-322 72-214 (226)
69 PRK13255 thiopurine S-methyltr 99.6 1.2E-13 2.6E-18 122.1 19.3 138 159-320 38-192 (218)
70 PRK00377 cbiT cobalt-precorrin 99.6 7.4E-14 1.6E-18 122.2 17.7 129 158-320 40-171 (198)
71 PRK11088 rrmA 23S rRNA methylt 99.6 3.6E-14 7.7E-19 130.5 15.6 94 159-265 86-183 (272)
72 PRK00121 trmB tRNA (guanine-N( 99.6 1.1E-14 2.4E-19 127.7 11.5 104 159-263 41-156 (202)
73 PRK13942 protein-L-isoaspartat 99.6 4.9E-14 1.1E-18 124.5 15.3 112 140-263 63-176 (212)
74 COG4976 Predicted methyltransf 99.6 3.8E-15 8.3E-20 127.0 6.7 154 141-321 113-268 (287)
75 TIGR00080 pimt protein-L-isoas 99.6 9.8E-14 2.1E-18 123.1 15.2 111 141-263 65-177 (215)
76 TIGR03534 RF_mod_PrmC protein- 99.6 3.1E-13 6.7E-18 122.8 18.3 139 140-317 75-240 (251)
77 PRK14968 putative methyltransf 99.5 2.5E-13 5.4E-18 117.8 16.7 129 158-318 23-173 (188)
78 KOG1271 Methyltransferases [Ge 99.5 2E-13 4.2E-18 112.5 14.5 126 160-316 69-203 (227)
79 TIGR01177 conserved hypothetic 99.5 1.5E-13 3.3E-18 129.6 15.5 115 142-263 171-294 (329)
80 TIGR00091 tRNA (guanine-N(7)-) 99.5 5.2E-14 1.1E-18 122.7 11.3 104 159-263 17-132 (194)
81 PRK00517 prmA ribosomal protei 99.5 3.5E-13 7.7E-18 122.2 16.1 120 158-318 119-238 (250)
82 TIGR00406 prmA ribosomal prote 99.5 3.6E-13 7.9E-18 124.6 16.4 102 158-264 159-260 (288)
83 TIGR03438 probable methyltrans 99.5 1.5E-12 3.3E-17 121.2 18.9 105 159-263 64-177 (301)
84 KOG2361 Predicted methyltransf 99.5 5.4E-14 1.2E-18 121.2 8.3 171 134-316 53-235 (264)
85 PF05175 MTS: Methyltransferas 99.5 9E-13 1.9E-17 112.4 15.9 103 159-263 32-140 (170)
86 TIGR00536 hemK_fam HemK family 99.5 4.1E-12 8.9E-17 117.4 20.7 104 159-263 115-244 (284)
87 PTZ00146 fibrillarin; Provisio 99.5 1.6E-12 3.5E-17 117.9 17.5 136 156-321 130-274 (293)
88 TIGR03533 L3_gln_methyl protei 99.5 2.9E-12 6.2E-17 118.2 18.7 104 159-263 122-251 (284)
89 PRK14121 tRNA (guanine-N(7)-)- 99.5 1E-12 2.2E-17 124.0 14.5 104 159-263 123-235 (390)
90 PRK15001 SAM-dependent 23S rib 99.5 1E-12 2.3E-17 124.5 14.6 104 159-263 229-340 (378)
91 PRK11188 rrmJ 23S rRNA methylt 99.5 8.3E-13 1.8E-17 116.3 12.8 95 158-264 51-166 (209)
92 PRK00312 pcm protein-L-isoaspa 99.5 2E-12 4.4E-17 114.4 15.3 111 141-264 66-176 (212)
93 COG2264 PrmA Ribosomal protein 99.5 1.5E-12 3.3E-17 118.1 14.4 127 158-319 162-289 (300)
94 PF13659 Methyltransf_26: Meth 99.5 3.3E-13 7.1E-18 107.7 9.0 105 159-263 1-115 (117)
95 PRK09328 N5-glutamine S-adenos 99.4 8.3E-12 1.8E-16 115.1 18.7 126 158-316 108-260 (275)
96 PRK07402 precorrin-6B methylas 99.4 4E-12 8.6E-17 111.1 15.7 109 145-263 32-142 (196)
97 COG2242 CobL Precorrin-6B meth 99.4 1.6E-11 3.5E-16 103.1 18.0 133 145-317 26-160 (187)
98 PHA03411 putative methyltransf 99.4 5E-12 1.1E-16 113.4 15.6 124 159-313 65-209 (279)
99 PRK11805 N5-glutamine S-adenos 99.4 7.4E-12 1.6E-16 116.5 17.3 103 159-262 134-262 (307)
100 PRK14966 unknown domain/N5-glu 99.4 1.1E-11 2.4E-16 117.7 18.5 140 138-317 238-404 (423)
101 COG4123 Predicted O-methyltran 99.4 3.7E-12 8E-17 112.7 14.3 132 159-321 45-197 (248)
102 PRK09489 rsmC 16S ribosomal RN 99.4 2.5E-12 5.4E-17 121.2 14.1 101 159-263 197-303 (342)
103 PF06325 PrmA: Ribosomal prote 99.4 2.2E-12 4.7E-17 118.3 13.2 145 130-318 139-283 (295)
104 COG2518 Pcm Protein-L-isoaspar 99.4 5.4E-12 1.2E-16 108.3 14.3 110 141-263 60-169 (209)
105 KOG1269 SAM-dependent methyltr 99.4 6.3E-13 1.4E-17 124.9 8.8 217 92-321 54-270 (364)
106 KOG3010 Methyltransferase [Gen 99.4 2E-12 4.4E-17 111.7 10.6 100 160-261 35-134 (261)
107 PF00891 Methyltransf_2: O-met 99.4 1.2E-11 2.7E-16 111.7 15.9 145 144-307 91-241 (241)
108 PRK13943 protein-L-isoaspartat 99.4 4.7E-12 1E-16 117.9 13.4 111 141-263 68-180 (322)
109 KOG1541 Predicted protein carb 99.4 6.8E-12 1.5E-16 106.7 12.8 117 137-263 32-160 (270)
110 PF12147 Methyltransf_20: Puta 99.4 2.7E-11 5.9E-16 108.0 16.2 169 135-315 116-295 (311)
111 COG2519 GCD14 tRNA(1-methylade 99.4 1.9E-11 4E-16 107.3 14.8 110 143-263 84-195 (256)
112 PF01135 PCMT: Protein-L-isoas 99.4 3.8E-12 8.2E-17 111.4 10.5 112 140-263 59-172 (209)
113 PRK13256 thiopurine S-methyltr 99.3 3.3E-11 7.1E-16 106.2 15.2 106 159-265 44-165 (226)
114 PRK01544 bifunctional N5-gluta 99.3 3.1E-11 6.8E-16 119.7 16.8 126 159-316 139-291 (506)
115 PF06080 DUF938: Protein of un 99.3 3.7E-11 8E-16 103.1 14.8 157 160-320 27-194 (204)
116 PF05724 TPMT: Thiopurine S-me 99.3 1.7E-11 3.6E-16 108.2 12.4 139 159-318 38-190 (218)
117 PF05891 Methyltransf_PK: AdoM 99.3 1.7E-11 3.8E-16 105.6 11.9 193 95-317 5-200 (218)
118 cd02440 AdoMet_MTases S-adenos 99.3 2.4E-11 5.3E-16 93.6 11.0 101 161-262 1-103 (107)
119 PF08704 GCD14: tRNA methyltra 99.3 4.8E-11 1E-15 106.6 13.5 139 141-319 28-172 (247)
120 TIGR00563 rsmB ribosomal RNA s 99.3 6.8E-11 1.5E-15 115.5 14.7 108 158-265 238-370 (426)
121 TIGR03704 PrmC_rel_meth putati 99.3 2.9E-10 6.3E-15 102.9 17.8 122 159-315 87-237 (251)
122 PLN02781 Probable caffeoyl-CoA 99.3 8.4E-11 1.8E-15 105.3 14.1 103 159-264 69-179 (234)
123 PRK04457 spermidine synthase; 99.3 5E-11 1.1E-15 108.6 12.7 106 159-264 67-178 (262)
124 PRK14901 16S rRNA methyltransf 99.3 7.9E-11 1.7E-15 115.2 14.8 106 158-264 252-385 (434)
125 COG2890 HemK Methylase of poly 99.3 2.4E-10 5.2E-15 104.9 16.6 123 161-317 113-262 (280)
126 PF03291 Pox_MCEL: mRNA cappin 99.3 4.8E-11 1E-15 111.6 11.8 107 158-264 62-187 (331)
127 PF05219 DREV: DREV methyltran 99.2 1.2E-10 2.6E-15 102.8 12.8 95 158-263 94-188 (265)
128 PF05148 Methyltransf_8: Hypot 99.2 9E-11 1.9E-15 100.1 11.5 127 141-318 59-185 (219)
129 COG2813 RsmC 16S RNA G1207 met 99.2 2E-10 4.3E-15 103.8 14.3 103 159-264 159-267 (300)
130 TIGR00438 rrmJ cell division p 99.2 1.6E-10 3.5E-15 100.2 13.2 94 158-263 32-146 (188)
131 PRK10901 16S rRNA methyltransf 99.2 2.5E-10 5.4E-15 111.5 15.5 105 158-264 244-373 (427)
132 PRK14904 16S rRNA methyltransf 99.2 2.1E-10 4.5E-15 112.6 14.9 106 158-265 250-379 (445)
133 smart00650 rADc Ribosomal RNA 99.2 2E-10 4.3E-15 97.9 12.8 109 143-263 3-113 (169)
134 TIGR00446 nop2p NOL1/NOP2/sun 99.2 1.8E-10 3.8E-15 105.3 13.2 106 158-264 71-200 (264)
135 PRK14903 16S rRNA methyltransf 99.2 2.1E-10 4.6E-15 111.8 14.3 107 158-265 237-368 (431)
136 PRK11783 rlmL 23S rRNA m(2)G24 99.2 2E-10 4.3E-15 118.6 14.4 133 159-322 539-684 (702)
137 KOG2940 Predicted methyltransf 99.2 1.7E-10 3.7E-15 98.7 11.4 150 159-317 73-226 (325)
138 PRK00811 spermidine synthase; 99.2 1.2E-10 2.7E-15 107.2 11.5 104 159-262 77-190 (283)
139 PF01596 Methyltransf_3: O-met 99.2 2.2E-10 4.9E-15 99.9 11.3 119 136-265 31-157 (205)
140 PRK14902 16S rRNA methyltransf 99.2 4E-10 8.7E-15 110.7 14.5 104 158-263 250-379 (444)
141 PRK13168 rumA 23S rRNA m(5)U19 99.2 7.2E-10 1.6E-14 108.9 15.9 118 135-263 279-400 (443)
142 PRK01581 speE spermidine synth 99.1 5.7E-10 1.2E-14 104.1 12.8 105 159-263 151-268 (374)
143 COG4122 Predicted O-methyltran 99.1 1.1E-09 2.3E-14 95.6 13.7 120 138-268 47-171 (219)
144 PLN02476 O-methyltransferase 99.1 1.1E-09 2.4E-14 99.4 13.8 104 159-265 119-230 (278)
145 PF02390 Methyltransf_4: Putat 99.1 4.5E-10 9.8E-15 97.6 10.8 103 160-263 19-133 (195)
146 KOG1975 mRNA cap methyltransfe 99.1 8.6E-10 1.9E-14 99.2 11.9 107 158-264 117-238 (389)
147 PRK15128 23S rRNA m(5)C1962 me 99.1 6.1E-10 1.3E-14 107.0 10.8 105 159-263 221-339 (396)
148 PLN02366 spermidine synthase 99.1 1.3E-09 2.9E-14 101.0 12.1 104 159-262 92-205 (308)
149 PLN02672 methionine S-methyltr 99.1 3.6E-09 7.7E-14 111.7 16.7 104 159-262 119-277 (1082)
150 KOG3045 Predicted RNA methylas 99.1 1.3E-09 2.9E-14 95.0 11.1 125 141-318 167-291 (325)
151 PRK03612 spermidine synthase; 99.1 1.1E-09 2.4E-14 109.3 12.2 106 158-263 297-415 (521)
152 PF04672 Methyltransf_19: S-ad 99.1 9.1E-10 2E-14 98.4 10.2 190 107-315 15-233 (267)
153 PRK03522 rumB 23S rRNA methylu 99.0 2.3E-09 5E-14 100.6 12.9 118 136-263 156-274 (315)
154 TIGR00479 rumA 23S rRNA (uraci 99.0 5.1E-09 1.1E-13 102.7 15.9 119 135-263 274-396 (431)
155 PRK11727 23S rRNA mA1618 methy 99.0 2.1E-08 4.6E-13 93.1 18.3 176 135-321 91-295 (321)
156 TIGR00417 speE spermidine synt 99.0 2.6E-09 5.7E-14 98.0 12.1 104 159-262 73-185 (270)
157 PLN02589 caffeoyl-CoA O-methyl 99.0 2.6E-09 5.7E-14 95.7 11.7 116 138-264 67-191 (247)
158 KOG2899 Predicted methyltransf 99.0 4.6E-09 9.9E-14 90.9 12.3 146 158-314 58-253 (288)
159 PF07942 N2227: N2227-like pro 99.0 1.3E-07 2.8E-12 85.4 22.0 165 137-318 36-242 (270)
160 PRK10909 rsmD 16S rRNA m(2)G96 99.0 1.3E-08 2.9E-13 88.4 14.7 103 159-263 54-159 (199)
161 PF10294 Methyltransf_16: Puta 99.0 2.6E-09 5.7E-14 91.2 9.9 105 158-263 45-156 (173)
162 KOG1499 Protein arginine N-met 99.0 1.5E-09 3.4E-14 99.4 8.8 103 158-261 60-165 (346)
163 PF01739 CheR: CheR methyltran 99.0 2.3E-09 5E-14 92.8 8.8 106 158-263 31-175 (196)
164 KOG2904 Predicted methyltransf 99.0 1.3E-08 2.8E-13 89.7 13.3 125 134-264 130-286 (328)
165 PRK10611 chemotaxis methyltran 99.0 1.7E-09 3.7E-14 99.0 7.9 105 159-263 116-262 (287)
166 COG2521 Predicted archaeal met 99.0 1.6E-09 3.4E-14 93.2 7.2 135 158-316 134-275 (287)
167 PHA03412 putative methyltransf 99.0 4.6E-09 1E-13 92.3 10.3 93 159-258 50-158 (241)
168 COG0220 Predicted S-adenosylme 99.0 7.1E-09 1.5E-13 91.6 11.3 103 160-263 50-164 (227)
169 COG2263 Predicted RNA methylas 98.9 8.4E-08 1.8E-12 80.6 16.4 127 159-325 46-175 (198)
170 PTZ00338 dimethyladenosine tra 98.9 5.2E-09 1.1E-13 96.6 10.2 94 139-241 22-115 (294)
171 PRK14896 ksgA 16S ribosomal RN 98.9 8.2E-09 1.8E-13 94.1 10.2 86 139-235 15-100 (258)
172 PRK00274 ksgA 16S ribosomal RN 98.9 7.5E-09 1.6E-13 95.0 9.9 83 141-233 30-112 (272)
173 COG3963 Phospholipid N-methylt 98.9 3.6E-08 7.9E-13 80.6 12.2 145 99-265 5-158 (194)
174 PF05185 PRMT5: PRMT5 arginine 98.9 1.6E-08 3.5E-13 98.4 12.0 100 159-260 187-294 (448)
175 KOG3178 Hydroxyindole-O-methyl 98.9 4.4E-08 9.6E-13 90.1 13.7 151 159-320 178-332 (342)
176 TIGR02085 meth_trns_rumB 23S r 98.8 3E-08 6.6E-13 95.1 12.5 119 135-263 215-334 (374)
177 COG1041 Predicted DNA modifica 98.8 3.9E-08 8.5E-13 90.7 12.5 115 143-263 187-310 (347)
178 COG1352 CheR Methylase of chem 98.8 4.4E-08 9.5E-13 88.6 12.5 105 159-263 97-241 (268)
179 PF11968 DUF3321: Putative met 98.8 4.8E-08 1E-12 84.1 11.6 121 159-320 52-183 (219)
180 PF01170 UPF0020: Putative RNA 98.8 8.5E-08 1.8E-12 82.3 12.2 116 141-261 16-149 (179)
181 PF02527 GidB: rRNA small subu 98.8 9E-08 2E-12 82.0 12.0 148 136-321 30-178 (184)
182 TIGR00095 RNA methyltransferas 98.8 7.3E-08 1.6E-12 83.4 11.3 104 159-263 50-159 (189)
183 TIGR00755 ksgA dimethyladenosi 98.8 1.5E-07 3.2E-12 85.6 13.2 103 140-258 16-121 (253)
184 PF03141 Methyltransf_29: Puta 98.7 6.2E-09 1.3E-13 99.7 3.8 99 159-264 118-220 (506)
185 PRK01544 bifunctional N5-gluta 98.7 1.3E-07 2.8E-12 94.1 13.3 127 136-263 323-462 (506)
186 KOG1661 Protein-L-isoaspartate 98.7 8E-08 1.7E-12 81.6 9.9 100 158-263 82-193 (237)
187 KOG1500 Protein arginine N-met 98.7 2.7E-07 5.9E-12 83.5 13.1 102 158-261 177-280 (517)
188 TIGR00478 tly hemolysin TlyA f 98.7 1.3E-07 2.8E-12 83.8 9.8 103 141-262 62-170 (228)
189 KOG0820 Ribosomal RNA adenine 98.7 1.5E-07 3.2E-12 83.1 9.8 85 141-233 46-130 (315)
190 KOG1663 O-methyltransferase [S 98.7 5.1E-07 1.1E-11 78.2 12.9 113 139-263 62-183 (237)
191 PRK04338 N(2),N(2)-dimethylgua 98.7 4.2E-07 9.1E-12 87.1 13.5 99 159-262 58-157 (382)
192 COG1092 Predicted SAM-dependen 98.6 1.7E-07 3.7E-12 89.1 10.6 104 159-263 218-336 (393)
193 PLN02823 spermine synthase 98.6 1.9E-07 4E-12 87.7 10.5 103 159-262 104-219 (336)
194 PF02475 Met_10: Met-10+ like- 98.6 1.3E-07 2.9E-12 82.0 8.7 98 158-260 101-199 (200)
195 KOG2915 tRNA(1-methyladenosine 98.6 3.4E-06 7.4E-11 74.6 16.8 110 142-261 94-207 (314)
196 KOG1331 Predicted methyltransf 98.6 1.1E-07 2.4E-12 84.8 6.4 98 159-267 46-147 (293)
197 PF01234 NNMT_PNMT_TEMT: NNMT/ 98.6 1.9E-07 4.1E-12 83.8 8.0 145 158-317 56-238 (256)
198 TIGR02143 trmA_only tRNA (urac 98.6 6.4E-07 1.4E-11 85.2 11.6 116 135-263 180-311 (353)
199 COG0357 GidB Predicted S-adeno 98.5 2.2E-06 4.8E-11 74.8 13.8 152 134-323 47-200 (215)
200 PRK05031 tRNA (uracil-5-)-meth 98.5 7E-07 1.5E-11 85.3 11.8 117 134-263 188-320 (362)
201 KOG3191 Predicted N6-DNA-methy 98.5 9.7E-06 2.1E-10 67.6 16.6 126 159-317 44-192 (209)
202 COG0030 KsgA Dimethyladenosine 98.5 6E-07 1.3E-11 80.4 9.7 93 139-241 16-109 (259)
203 PF10672 Methyltrans_SAM: S-ad 98.5 3.2E-07 7E-12 83.9 8.1 105 159-263 124-238 (286)
204 PRK04148 hypothetical protein; 98.5 7.9E-07 1.7E-11 71.5 9.3 94 159-266 17-112 (134)
205 PF09243 Rsm22: Mitochondrial 98.5 2E-06 4.4E-11 78.9 12.9 121 137-265 17-141 (274)
206 PRK00050 16S rRNA m(4)C1402 me 98.5 5.2E-07 1.1E-11 82.9 8.7 88 141-236 7-100 (296)
207 PRK11933 yebU rRNA (cytosine-C 98.5 2.3E-06 4.9E-11 83.9 13.6 106 158-264 113-243 (470)
208 COG0500 SmtA SAM-dependent met 98.5 3.7E-06 8.1E-11 69.7 12.9 103 162-267 52-159 (257)
209 COG2265 TrmA SAM-dependent met 98.5 3.3E-06 7.2E-11 81.9 13.8 120 134-263 274-396 (432)
210 KOG3420 Predicted RNA methylas 98.4 2.8E-07 6.2E-12 73.6 4.5 77 158-236 48-124 (185)
211 PF01564 Spermine_synth: Sperm 98.4 1.2E-06 2.7E-11 79.0 9.3 105 159-263 77-191 (246)
212 COG0421 SpeE Spermidine syntha 98.4 2.1E-06 4.5E-11 78.5 10.4 103 159-262 77-189 (282)
213 KOG3987 Uncharacterized conser 98.4 1.8E-07 3.8E-12 79.2 2.7 96 157-263 111-207 (288)
214 PF03602 Cons_hypoth95: Conser 98.4 8.4E-07 1.8E-11 76.3 6.9 105 159-264 43-154 (183)
215 COG2520 Predicted methyltransf 98.4 3.2E-06 6.9E-11 78.8 10.9 106 158-267 188-293 (341)
216 PF03059 NAS: Nicotianamine sy 98.4 7.2E-06 1.6E-10 74.4 12.8 159 90-262 55-229 (276)
217 PRK00536 speE spermidine synth 98.4 4.7E-06 1E-10 75.3 11.6 97 158-263 72-171 (262)
218 PF04816 DUF633: Family of unk 98.3 5.4E-06 1.2E-10 72.4 11.3 123 162-319 1-125 (205)
219 KOG3201 Uncharacterized conser 98.3 3.8E-07 8.2E-12 74.2 2.9 137 159-324 30-172 (201)
220 PF09445 Methyltransf_15: RNA 98.3 1E-06 2.2E-11 73.5 5.3 71 161-232 2-75 (163)
221 TIGR03439 methyl_EasF probable 98.3 1.9E-05 4.1E-10 73.6 14.1 117 139-263 64-197 (319)
222 COG0293 FtsJ 23S rRNA methylas 98.3 7.5E-06 1.6E-10 70.6 10.3 110 140-265 31-161 (205)
223 PF08123 DOT1: Histone methyla 98.3 3.9E-06 8.4E-11 73.3 8.5 117 140-262 29-157 (205)
224 TIGR00308 TRM1 tRNA(guanine-26 98.3 1.1E-05 2.4E-10 77.0 12.1 99 159-262 45-146 (374)
225 PRK11783 rlmL 23S rRNA m(2)G24 98.2 2E-05 4.4E-10 81.7 14.2 120 140-263 176-347 (702)
226 PF01728 FtsJ: FtsJ-like methy 98.2 7.5E-07 1.6E-11 76.7 2.9 110 141-265 8-141 (181)
227 PF05958 tRNA_U5-meth_tr: tRNA 98.2 7.8E-06 1.7E-10 77.8 9.4 79 134-220 178-256 (352)
228 PF13679 Methyltransf_32: Meth 98.2 3.5E-05 7.5E-10 63.5 11.7 98 158-262 25-130 (141)
229 COG0742 N6-adenine-specific me 98.1 2.5E-05 5.4E-10 66.4 10.3 106 158-263 43-154 (187)
230 PF02384 N6_Mtase: N-6 DNA Met 98.1 1.8E-05 3.9E-10 74.3 10.3 105 159-263 47-183 (311)
231 COG3897 Predicted methyltransf 98.1 1.3E-05 2.9E-10 67.6 8.2 102 157-264 78-180 (218)
232 KOG2798 Putative trehalase [Ca 98.1 0.00035 7.5E-09 63.4 16.5 174 134-323 127-342 (369)
233 KOG1709 Guanidinoacetate methy 98.1 2.7E-05 5.8E-10 66.7 8.9 120 136-263 85-206 (271)
234 KOG2730 Methylase [General fun 98.0 1.2E-05 2.6E-10 69.0 6.6 74 159-233 95-172 (263)
235 COG4798 Predicted methyltransf 98.0 4.7E-05 1E-09 64.2 9.6 155 145-321 40-208 (238)
236 PF00398 RrnaAD: Ribosomal RNA 98.0 3.4E-05 7.3E-10 70.5 9.6 104 140-255 17-123 (262)
237 PRK11760 putative 23S rRNA C24 98.0 3.1E-05 6.8E-10 71.7 9.2 87 157-256 210-296 (357)
238 COG0144 Sun tRNA and rRNA cyto 98.0 0.00015 3.2E-09 69.1 14.1 107 157-264 155-289 (355)
239 PF13578 Methyltransf_24: Meth 97.9 1.4E-06 3E-11 68.0 -0.6 99 163-263 1-105 (106)
240 PLN02668 indole-3-acetate carb 97.9 0.0011 2.4E-08 63.1 18.7 163 159-321 64-312 (386)
241 COG0116 Predicted N6-adenine-s 97.9 7.9E-05 1.7E-09 70.1 10.8 118 140-263 178-344 (381)
242 COG4076 Predicted RNA methylas 97.9 4.1E-05 8.9E-10 64.1 7.9 101 159-263 33-135 (252)
243 COG4262 Predicted spermidine s 97.8 0.00022 4.8E-09 65.9 11.5 105 159-263 290-407 (508)
244 TIGR02987 met_A_Alw26 type II 97.8 0.00024 5.1E-09 71.6 13.0 74 159-233 32-119 (524)
245 PF01269 Fibrillarin: Fibrilla 97.8 0.00064 1.4E-08 59.2 12.5 107 152-263 67-178 (229)
246 PF05971 Methyltransf_10: Prot 97.7 0.00042 9E-09 63.6 11.8 102 134-238 81-189 (299)
247 COG2384 Predicted SAM-dependen 97.7 0.0015 3.2E-08 56.7 14.0 127 159-319 17-144 (226)
248 KOG2352 Predicted spermine/spe 97.7 0.00018 3.9E-09 69.3 9.3 102 161-264 51-162 (482)
249 TIGR00006 S-adenosyl-methyltra 97.7 0.0003 6.4E-09 65.0 9.9 89 141-236 8-102 (305)
250 PF03492 Methyltransf_7: SAM d 97.7 0.0047 1E-07 58.4 18.0 160 158-320 16-255 (334)
251 COG1889 NOP1 Fibrillarin-like 97.6 0.0039 8.5E-08 53.2 15.3 106 152-263 70-180 (231)
252 TIGR01444 fkbM_fam methyltrans 97.6 0.00019 4.2E-09 58.9 7.6 58 161-219 1-59 (143)
253 COG1189 Predicted rRNA methyla 97.6 0.00015 3.2E-09 63.5 6.7 150 141-317 66-223 (245)
254 PF01189 Nol1_Nop2_Fmu: NOL1/N 97.6 0.00058 1.3E-08 63.0 10.9 106 158-264 85-220 (283)
255 KOG2187 tRNA uracil-5-methyltr 97.6 0.00012 2.6E-09 70.6 5.9 67 147-220 377-443 (534)
256 PF06962 rRNA_methylase: Putat 97.5 0.00041 8.9E-09 56.2 7.4 80 183-264 1-93 (140)
257 KOG4589 Cell division protein 97.5 0.0012 2.5E-08 55.6 9.9 97 157-266 68-187 (232)
258 COG4627 Uncharacterized protei 97.5 3.6E-05 7.8E-10 62.4 1.0 55 210-264 31-87 (185)
259 PRK10742 putative methyltransf 97.4 0.0014 3.1E-08 58.3 9.5 90 143-238 76-176 (250)
260 KOG3115 Methyltransferase-like 97.3 0.00091 2E-08 57.0 7.6 103 159-263 61-183 (249)
261 KOG4058 Uncharacterized conser 97.3 0.0023 4.9E-08 51.7 9.2 115 140-264 59-173 (199)
262 TIGR00027 mthyl_TIGR00027 meth 97.2 0.019 4.1E-07 52.3 15.9 171 136-316 64-248 (260)
263 PF03141 Methyltransf_29: Puta 97.2 0.00057 1.2E-08 66.2 6.0 98 159-263 366-467 (506)
264 PF04989 CmcI: Cephalosporin h 97.2 0.0024 5.1E-08 55.4 8.9 102 159-263 33-147 (206)
265 PF07091 FmrO: Ribosomal RNA m 97.2 0.0015 3.3E-08 58.0 7.5 79 158-239 105-184 (251)
266 KOG2793 Putative N2,N2-dimethy 97.1 0.0062 1.3E-07 54.4 10.9 105 159-263 87-199 (248)
267 PF01861 DUF43: Protein of unk 97.0 0.032 7E-07 49.4 14.6 128 159-316 45-176 (243)
268 KOG1122 tRNA and rRNA cytosine 97.0 0.0045 9.7E-08 58.6 9.5 108 155-264 238-372 (460)
269 KOG1501 Arginine N-methyltrans 96.9 0.0027 5.9E-08 60.2 6.8 74 159-232 67-141 (636)
270 COG5459 Predicted rRNA methyla 96.8 0.0078 1.7E-07 55.6 8.9 106 159-265 114-227 (484)
271 COG0275 Predicted S-adenosylme 96.8 0.011 2.4E-07 53.8 9.8 89 141-236 11-106 (314)
272 PRK01747 mnmC bifunctional tRN 96.7 0.0089 1.9E-07 62.1 9.7 104 159-262 58-205 (662)
273 PRK09424 pntA NAD(P) transhydr 96.7 0.026 5.5E-07 56.2 12.3 100 157-264 163-286 (509)
274 PF01795 Methyltransf_5: MraW 96.6 0.0035 7.5E-08 58.0 5.4 89 141-236 8-103 (310)
275 PF04445 SAM_MT: Putative SAM- 96.5 0.013 2.9E-07 51.9 8.1 91 144-238 64-163 (234)
276 KOG0822 Protein kinase inhibit 96.5 0.02 4.3E-07 55.8 9.7 125 135-263 346-478 (649)
277 COG1064 AdhP Zn-dependent alco 96.5 0.028 6E-07 52.7 10.5 95 157-265 165-261 (339)
278 PF02005 TRM: N2,N2-dimethylgu 96.3 0.015 3.3E-07 55.7 8.2 101 159-263 50-154 (377)
279 COG1565 Uncharacterized conser 96.1 0.11 2.3E-06 48.9 12.2 60 140-204 64-132 (370)
280 cd08283 FDH_like_1 Glutathione 96.0 0.067 1.4E-06 51.8 11.0 99 158-263 184-306 (386)
281 COG0286 HsdM Type I restrictio 95.8 0.17 3.8E-06 50.4 13.0 106 159-264 187-327 (489)
282 COG3129 Predicted SAM-dependen 95.8 0.079 1.7E-06 46.4 9.1 103 134-238 56-165 (292)
283 PF03269 DUF268: Caenorhabditi 95.8 0.019 4.1E-07 47.3 5.0 130 159-319 2-146 (177)
284 KOG1099 SAM-dependent methyltr 95.8 0.024 5.2E-07 49.4 5.9 94 159-264 42-164 (294)
285 KOG0024 Sorbitol dehydrogenase 95.5 0.25 5.4E-06 45.7 11.8 99 158-268 169-278 (354)
286 PRK09880 L-idonate 5-dehydroge 95.5 0.14 3E-06 48.6 10.8 97 158-264 169-267 (343)
287 KOG1562 Spermidine synthase [A 95.5 0.052 1.1E-06 49.3 7.2 106 158-263 121-236 (337)
288 KOG2198 tRNA cytosine-5-methyl 95.4 0.22 4.7E-06 46.9 11.3 110 155-265 152-298 (375)
289 COG3510 CmcI Cephalosporin hyd 95.4 0.06 1.3E-06 45.7 6.7 104 159-268 70-185 (237)
290 PF03514 GRAS: GRAS domain fam 95.3 0.58 1.3E-05 45.0 14.5 102 158-261 110-242 (374)
291 TIGR00561 pntA NAD(P) transhyd 95.3 0.086 1.9E-06 52.4 8.9 96 158-261 163-282 (511)
292 KOG2671 Putative RNA methylase 95.2 0.047 1E-06 50.6 6.2 105 158-263 208-354 (421)
293 PRK11524 putative methyltransf 95.2 0.082 1.8E-06 48.9 8.0 58 139-203 195-252 (284)
294 cd08254 hydroxyacyl_CoA_DH 6-h 95.1 0.28 6.2E-06 46.0 11.6 93 158-264 165-264 (338)
295 KOG2920 Predicted methyltransf 95.1 0.027 5.8E-07 51.0 4.2 103 158-262 116-233 (282)
296 PF02636 Methyltransf_28: Puta 95.0 0.072 1.6E-06 48.3 6.8 76 159-239 19-108 (252)
297 PF01555 N6_N4_Mtase: DNA meth 94.8 0.1 2.2E-06 46.0 7.1 54 139-199 178-231 (231)
298 PHA01634 hypothetical protein 94.7 0.23 5E-06 39.3 7.8 46 159-204 29-74 (156)
299 PRK13699 putative methylase; P 94.6 0.1 2.2E-06 46.5 6.7 52 211-262 3-71 (227)
300 COG1867 TRM1 N2,N2-dimethylgua 94.6 0.19 4E-06 47.3 8.5 100 159-263 53-154 (380)
301 COG1063 Tdh Threonine dehydrog 94.6 0.39 8.4E-06 45.8 11.1 95 159-266 169-272 (350)
302 KOG1253 tRNA methyltransferase 94.6 0.034 7.4E-07 53.9 3.8 102 158-263 109-216 (525)
303 PRK13699 putative methylase; P 94.6 0.18 3.9E-06 45.0 8.1 58 140-204 151-208 (227)
304 COG4301 Uncharacterized conser 94.5 1.1 2.5E-05 39.8 12.5 105 159-263 79-193 (321)
305 PF07279 DUF1442: Protein of u 94.5 0.73 1.6E-05 40.2 11.1 99 159-263 42-148 (218)
306 KOG2651 rRNA adenine N-6-methy 94.4 0.18 3.8E-06 47.5 7.7 42 159-200 154-195 (476)
307 PF10354 DUF2431: Domain of un 94.3 0.93 2E-05 38.2 11.3 131 165-325 3-159 (166)
308 COG3315 O-Methyltransferase in 94.2 0.95 2E-05 42.1 12.2 174 135-316 74-262 (297)
309 PF02254 TrkA_N: TrkA-N domain 93.9 1 2.2E-05 35.1 10.6 84 167-263 4-96 (116)
310 COG0686 Ald Alanine dehydrogen 93.9 0.19 4.1E-06 46.1 6.8 103 157-264 166-269 (371)
311 TIGR02822 adh_fam_2 zinc-bindi 93.9 0.62 1.3E-05 43.9 10.8 90 158-264 165-255 (329)
312 PF11312 DUF3115: Protein of u 93.8 0.11 2.4E-06 47.9 5.2 107 158-264 86-243 (315)
313 PF07757 AdoMet_MTase: Predict 93.8 0.05 1.1E-06 41.7 2.4 32 158-190 58-89 (112)
314 KOG1596 Fibrillarin and relate 93.6 0.35 7.6E-06 42.7 7.6 119 137-263 137-261 (317)
315 cd05188 MDR Medium chain reduc 93.6 0.23 4.9E-06 44.8 6.9 92 158-264 134-233 (271)
316 PF00107 ADH_zinc_N: Zinc-bind 93.4 0.31 6.7E-06 38.9 6.7 86 168-266 1-92 (130)
317 PF06859 Bin3: Bicoid-interact 93.3 0.025 5.3E-07 43.7 0.1 83 226-317 1-91 (110)
318 PTZ00357 methyltransferase; Pr 93.3 0.53 1.1E-05 47.8 9.2 98 160-258 702-830 (1072)
319 cd00401 AdoHcyase S-adenosyl-L 93.3 0.8 1.7E-05 44.5 10.4 100 141-263 188-289 (413)
320 cd08230 glucose_DH Glucose deh 93.2 0.61 1.3E-05 44.4 9.5 91 158-264 172-270 (355)
321 KOG2539 Mitochondrial/chloropl 93.1 0.34 7.3E-06 47.0 7.4 107 159-265 201-317 (491)
322 KOG2918 Carboxymethyl transfer 92.9 2.8 6.1E-05 38.7 12.6 182 116-320 61-279 (335)
323 cd00315 Cyt_C5_DNA_methylase C 92.8 0.33 7.1E-06 44.7 6.7 66 161-234 2-70 (275)
324 cd08232 idonate-5-DH L-idonate 92.4 0.91 2E-05 42.7 9.5 93 158-263 165-262 (339)
325 KOG1227 Putative methyltransfe 91.9 0.11 2.4E-06 47.2 2.4 102 158-264 194-298 (351)
326 TIGR03451 mycoS_dep_FDH mycoth 91.4 1 2.2E-05 42.9 8.7 94 158-264 176-277 (358)
327 TIGR01202 bchC 2-desacetyl-2-h 91.4 1.2 2.6E-05 41.5 8.9 86 159-264 145-232 (308)
328 cd08237 ribitol-5-phosphate_DH 91.0 2.1 4.5E-05 40.6 10.3 92 158-264 163-257 (341)
329 cd08281 liver_ADH_like1 Zinc-d 90.6 1.4 3E-05 42.3 8.8 94 158-264 191-291 (371)
330 PF11599 AviRa: RRNA methyltra 90.5 0.68 1.5E-05 40.3 5.7 44 158-201 51-97 (246)
331 cd08239 THR_DH_like L-threonin 90.3 0.92 2E-05 42.7 7.2 94 158-264 163-263 (339)
332 PRK05786 fabG 3-ketoacyl-(acyl 90.3 6 0.00013 34.8 12.1 102 159-264 5-136 (238)
333 cd08234 threonine_DH_like L-th 90.2 3.1 6.7E-05 38.9 10.7 94 158-264 159-258 (334)
334 PLN03154 putative allyl alcoho 89.9 5 0.00011 38.1 11.9 94 158-264 158-259 (348)
335 cd08255 2-desacetyl-2-hydroxye 89.9 3.5 7.6E-05 37.4 10.5 92 158-263 97-190 (277)
336 PF05430 Methyltransf_30: S-ad 89.7 0.22 4.9E-06 39.7 2.1 76 210-320 33-113 (124)
337 COG1568 Predicted methyltransf 89.7 1.9 4.2E-05 39.0 8.0 102 158-263 152-260 (354)
338 TIGR03366 HpnZ_proposed putati 89.6 3.8 8.3E-05 37.5 10.5 94 158-264 120-219 (280)
339 KOG2078 tRNA modification enzy 89.5 0.25 5.3E-06 47.2 2.4 61 158-219 249-310 (495)
340 cd08245 CAD Cinnamyl alcohol d 89.2 5.5 0.00012 37.1 11.5 93 158-263 162-256 (330)
341 TIGR00518 alaDH alanine dehydr 89.1 0.75 1.6E-05 44.2 5.6 102 158-264 166-268 (370)
342 KOG1098 Putative SAM-dependent 89.1 1.2 2.7E-05 44.6 6.9 91 158-261 44-156 (780)
343 PRK07576 short chain dehydroge 88.9 5.1 0.00011 36.2 10.7 73 159-234 9-94 (264)
344 cd08261 Zn_ADH7 Alcohol dehydr 88.8 1.1 2.4E-05 42.1 6.5 93 158-263 159-258 (337)
345 TIGR00936 ahcY adenosylhomocys 88.5 4.7 0.0001 39.2 10.5 87 158-263 194-282 (406)
346 PF05711 TylF: Macrocin-O-meth 88.1 1.4 3E-05 39.7 6.1 105 159-265 75-214 (248)
347 PRK07326 short chain dehydroge 88.0 8.7 0.00019 33.8 11.4 75 159-237 6-93 (237)
348 PRK10309 galactitol-1-phosphat 87.7 3.1 6.7E-05 39.4 8.8 94 158-264 160-261 (347)
349 TIGR03201 dearomat_had 6-hydro 87.7 3.6 7.7E-05 39.0 9.2 97 158-264 166-273 (349)
350 cd08294 leukotriene_B4_DH_like 87.4 10 0.00022 35.3 12.0 92 158-263 143-241 (329)
351 cd05278 FDH_like Formaldehyde 87.3 1.6 3.4E-05 41.2 6.5 94 157-263 166-267 (347)
352 TIGR02825 B4_12hDH leukotriene 87.3 5.8 0.00013 37.1 10.3 92 158-263 138-237 (325)
353 PF11899 DUF3419: Protein of u 87.2 2.1 4.5E-05 41.2 7.1 45 158-203 35-79 (380)
354 KOG1201 Hydroxysteroid 17-beta 87.1 11 0.00025 34.6 11.4 79 157-239 36-127 (300)
355 PLN02586 probable cinnamyl alc 87.0 2.7 5.7E-05 40.2 7.9 94 158-263 183-278 (360)
356 PRK08324 short chain dehydroge 86.7 7.3 0.00016 40.8 11.5 101 159-263 422-557 (681)
357 PLN02494 adenosylhomocysteinas 86.7 3.1 6.7E-05 41.1 8.1 101 141-263 240-341 (477)
358 PRK12939 short chain dehydroge 86.7 5.5 0.00012 35.3 9.4 75 159-236 7-94 (250)
359 PRK08265 short chain dehydroge 86.4 8.8 0.00019 34.6 10.7 72 159-236 6-90 (261)
360 cd08236 sugar_DH NAD(P)-depend 86.3 1.9 4.2E-05 40.5 6.5 93 158-263 159-258 (343)
361 cd08293 PTGR2 Prostaglandin re 86.3 12 0.00026 35.1 12.0 92 159-263 155-254 (345)
362 TIGR02819 fdhA_non_GSH formald 86.1 9.5 0.00021 37.0 11.3 100 158-264 185-300 (393)
363 PRK11524 putative methyltransf 86.1 0.69 1.5E-05 42.7 3.2 54 209-262 8-79 (284)
364 TIGR02818 adh_III_F_hyde S-(hy 86.1 14 0.0003 35.4 12.3 97 158-264 185-288 (368)
365 cd05285 sorbitol_DH Sorbitol d 85.9 9 0.0002 36.0 10.9 93 158-263 162-265 (343)
366 PLN02740 Alcohol dehydrogenase 85.8 6.1 0.00013 38.0 9.8 94 158-264 198-301 (381)
367 TIGR00497 hsdM type I restrict 85.7 17 0.00037 36.5 13.2 106 158-263 217-355 (501)
368 COG1255 Uncharacterized protei 85.6 5.8 0.00013 30.9 7.3 88 159-264 14-103 (129)
369 PRK07806 short chain dehydroge 85.5 14 0.0003 32.7 11.5 102 159-263 6-134 (248)
370 KOG3924 Putative protein methy 85.3 4.1 9E-05 38.8 7.8 123 136-264 175-309 (419)
371 PF11899 DUF3419: Protein of u 85.3 1.6 3.5E-05 42.0 5.3 61 205-266 273-337 (380)
372 PRK05476 S-adenosyl-L-homocyst 85.3 4.1 8.9E-05 39.8 8.2 87 158-263 211-299 (425)
373 cd08238 sorbose_phosphate_red 85.1 12 0.00025 36.5 11.5 100 157-262 174-287 (410)
374 cd08242 MDR_like Medium chain 85.0 15 0.00033 33.9 11.9 89 158-262 155-244 (319)
375 COG4017 Uncharacterized protei 85.0 5.5 0.00012 34.1 7.6 87 158-265 44-131 (254)
376 COG0604 Qor NADPH:quinone redu 84.8 4.9 0.00011 37.9 8.4 97 158-265 142-243 (326)
377 PRK07109 short chain dehydroge 84.8 17 0.00037 34.2 12.2 75 159-236 8-95 (334)
378 cd08295 double_bond_reductase_ 84.8 12 0.00026 35.2 11.1 96 158-263 151-251 (338)
379 KOG2352 Predicted spermine/spe 84.8 1.3 2.8E-05 43.4 4.4 106 158-265 295-418 (482)
380 PRK06181 short chain dehydroge 84.6 9.2 0.0002 34.3 9.9 75 160-237 2-89 (263)
381 KOG0821 Predicted ribosomal RN 84.6 9.2 0.0002 33.6 9.0 75 139-220 36-110 (326)
382 cd08231 MDR_TM0436_like Hypoth 84.5 14 0.0003 35.0 11.5 93 158-263 177-280 (361)
383 PRK07533 enoyl-(acyl carrier p 84.3 14 0.00031 33.1 11.0 102 159-263 10-148 (258)
384 PRK08306 dipicolinate synthase 84.1 4.9 0.00011 37.3 7.9 89 158-262 151-240 (296)
385 KOG1269 SAM-dependent methyltr 84.1 3.4 7.4E-05 39.5 6.9 107 158-267 180-317 (364)
386 PRK12429 3-hydroxybutyrate deh 84.1 16 0.00035 32.4 11.2 78 159-239 4-94 (258)
387 PLN03209 translocon at the inn 83.9 13 0.00028 37.8 11.2 78 158-236 79-169 (576)
388 cd08300 alcohol_DH_class_III c 83.6 26 0.00055 33.4 13.0 94 158-264 186-289 (368)
389 cd08298 CAD2 Cinnamyl alcohol 83.5 16 0.00036 33.9 11.4 89 158-263 167-256 (329)
390 PLN02514 cinnamyl-alcohol dehy 83.4 6.7 0.00015 37.3 8.8 95 158-264 180-276 (357)
391 PRK03659 glutathione-regulated 83.1 14 0.00031 38.0 11.5 89 160-263 401-498 (601)
392 PRK05854 short chain dehydroge 83.1 23 0.0005 33.0 12.2 77 159-236 14-103 (313)
393 cd08285 NADP_ADH NADP(H)-depen 83.1 6.8 0.00015 37.0 8.7 93 158-263 166-266 (351)
394 PLN02827 Alcohol dehydrogenase 82.9 5 0.00011 38.6 7.7 93 158-263 193-295 (378)
395 KOG2912 Predicted DNA methylas 82.9 3.3 7.2E-05 38.3 5.9 96 134-234 81-186 (419)
396 PF05206 TRM13: Methyltransfer 82.7 5.3 0.00012 36.3 7.3 63 158-221 18-86 (259)
397 PRK09242 tropinone reductase; 82.4 32 0.00069 30.7 12.5 77 159-236 9-98 (257)
398 PRK06940 short chain dehydroge 81.6 23 0.00049 32.2 11.3 98 161-262 4-124 (275)
399 PRK06128 oxidoreductase; Provi 81.4 24 0.00051 32.6 11.5 102 159-263 55-191 (300)
400 PRK06701 short chain dehydroge 81.3 27 0.00058 32.1 11.7 102 159-263 46-181 (290)
401 COG2933 Predicted SAM-dependen 81.3 12 0.00025 33.9 8.6 89 155-256 208-296 (358)
402 PF04072 LCM: Leucine carboxyl 81.3 6.7 0.00014 33.5 7.2 80 160-240 80-171 (183)
403 COG0270 Dcm Site-specific DNA 81.2 16 0.00035 34.5 10.3 122 159-312 3-141 (328)
404 PRK10669 putative cation:proto 81.2 21 0.00046 36.4 11.9 88 160-262 418-514 (558)
405 PLN02178 cinnamyl-alcohol dehy 81.1 8.6 0.00019 37.0 8.7 94 158-264 178-274 (375)
406 PF02719 Polysacc_synt_2: Poly 81.1 5.1 0.00011 37.0 6.6 75 166-240 4-91 (293)
407 PRK08339 short chain dehydroge 81.0 33 0.00072 30.9 12.1 76 159-236 8-95 (263)
408 cd08233 butanediol_DH_like (2R 81.0 3.8 8.3E-05 38.7 6.1 92 158-264 172-273 (351)
409 cd05281 TDH Threonine dehydrog 81.0 5.9 0.00013 37.3 7.4 95 158-263 163-262 (341)
410 cd08277 liver_alcohol_DH_like 80.6 32 0.00069 32.8 12.4 97 158-264 184-287 (365)
411 cd08296 CAD_like Cinnamyl alco 80.3 8.6 0.00019 36.1 8.2 94 158-264 163-260 (333)
412 PRK08594 enoyl-(acyl carrier p 79.9 22 0.00049 31.9 10.5 104 159-263 7-147 (257)
413 PTZ00075 Adenosylhomocysteinas 79.6 14 0.00031 36.5 9.5 101 140-263 239-341 (476)
414 PF05050 Methyltransf_21: Meth 79.3 6.4 0.00014 32.4 6.4 54 164-217 1-61 (167)
415 cd08301 alcohol_DH_plants Plan 79.2 34 0.00074 32.5 12.1 94 158-264 187-290 (369)
416 KOG1209 1-Acyl dihydroxyaceton 79.2 12 0.00026 32.9 7.7 69 158-234 6-89 (289)
417 PRK07454 short chain dehydroge 78.6 16 0.00035 32.2 9.1 75 159-236 6-93 (241)
418 PF00145 DNA_methylase: C-5 cy 78.4 3.6 7.8E-05 38.4 5.0 65 161-234 2-69 (335)
419 PRK06182 short chain dehydroge 78.3 28 0.0006 31.4 10.8 71 159-238 3-86 (273)
420 cd08278 benzyl_alcohol_DH Benz 78.0 5.7 0.00012 37.9 6.3 93 158-263 186-285 (365)
421 PRK08267 short chain dehydroge 77.6 21 0.00045 31.9 9.6 72 161-237 3-88 (260)
422 cd08274 MDR9 Medium chain dehy 77.2 33 0.00072 32.1 11.3 91 158-263 177-273 (350)
423 PRK09072 short chain dehydroge 77.2 31 0.00067 30.9 10.7 76 159-238 5-92 (263)
424 PRK07984 enoyl-(acyl carrier p 77.1 38 0.00083 30.6 11.2 75 159-236 6-94 (262)
425 PF14740 DUF4471: Domain of un 76.8 5.1 0.00011 36.9 5.2 67 224-315 220-286 (289)
426 cd08286 FDH_like_ADH2 formalde 76.5 17 0.00037 34.1 9.1 96 158-263 166-266 (345)
427 PRK07066 3-hydroxybutyryl-CoA 76.5 11 0.00025 35.3 7.7 97 159-261 7-117 (321)
428 cd08265 Zn_ADH3 Alcohol dehydr 76.4 24 0.00051 33.9 10.2 96 158-263 203-307 (384)
429 PRK07985 oxidoreductase; Provi 76.3 30 0.00065 31.8 10.5 102 159-263 49-185 (294)
430 TIGR00692 tdh L-threonine 3-de 76.3 42 0.00091 31.4 11.7 93 158-263 161-261 (340)
431 PLN02989 cinnamyl-alcohol dehy 76.1 11 0.00024 35.2 7.6 77 159-236 5-87 (325)
432 cd08243 quinone_oxidoreductase 75.9 35 0.00076 31.2 10.9 90 158-263 142-238 (320)
433 cd08279 Zn_ADH_class_III Class 75.8 9.1 0.0002 36.4 7.1 93 158-263 182-282 (363)
434 PRK06124 gluconate 5-dehydroge 75.4 20 0.00043 31.9 8.8 75 159-236 11-98 (256)
435 PRK06914 short chain dehydroge 75.3 19 0.00042 32.5 8.9 77 159-236 3-91 (280)
436 cd08291 ETR_like_1 2-enoyl thi 75.3 31 0.00067 32.1 10.4 92 159-264 143-243 (324)
437 PRK08213 gluconate 5-dehydroge 75.3 19 0.00042 32.1 8.8 75 159-236 12-99 (259)
438 PRK07523 gluconate 5-dehydroge 74.7 19 0.00042 32.0 8.6 76 159-237 10-98 (255)
439 PRK05855 short chain dehydroge 74.6 1E+02 0.0022 31.2 15.0 77 159-238 315-404 (582)
440 PRK08415 enoyl-(acyl carrier p 74.6 52 0.0011 29.9 11.5 102 159-263 5-143 (274)
441 cd08263 Zn_ADH10 Alcohol dehyd 74.2 34 0.00073 32.5 10.5 93 158-263 187-287 (367)
442 KOG0023 Alcohol dehydrogenase, 74.2 29 0.00062 32.5 9.2 96 158-264 181-280 (360)
443 PRK08251 short chain dehydroge 74.0 22 0.00048 31.4 8.8 77 159-236 2-91 (248)
444 cd08282 PFDH_like Pseudomonas 73.9 48 0.001 31.6 11.5 97 158-264 176-286 (375)
445 PRK06079 enoyl-(acyl carrier p 73.8 37 0.0008 30.3 10.2 100 159-263 7-143 (252)
446 PRK07814 short chain dehydroge 73.5 23 0.0005 31.8 8.8 74 159-235 10-96 (263)
447 PRK12742 oxidoreductase; Provi 73.4 52 0.0011 28.7 10.9 97 159-263 6-131 (237)
448 PRK05808 3-hydroxybutyryl-CoA 73.4 28 0.0006 31.9 9.4 94 161-261 5-116 (282)
449 PF01262 AlaDh_PNT_C: Alanine 73.1 8.7 0.00019 32.3 5.5 95 158-260 19-136 (168)
450 cd08241 QOR1 Quinone oxidoredu 73.0 9.1 0.0002 35.1 6.2 93 158-264 139-239 (323)
451 PRK07063 short chain dehydroge 72.9 24 0.00053 31.5 8.8 77 159-236 7-96 (260)
452 PRK06194 hypothetical protein; 72.9 21 0.00045 32.5 8.5 76 159-237 6-94 (287)
453 PRK09291 short chain dehydroge 72.8 24 0.00053 31.3 8.8 74 160-236 3-83 (257)
454 cd08240 6_hydroxyhexanoate_dh_ 72.6 42 0.00091 31.5 10.7 93 158-263 175-274 (350)
455 cd05283 CAD1 Cinnamyl alcohol 72.5 40 0.00087 31.5 10.5 93 158-263 169-263 (337)
456 PF03686 UPF0146: Uncharacteri 72.5 11 0.00024 30.0 5.4 90 159-266 14-105 (127)
457 PF12692 Methyltransf_17: S-ad 72.4 18 0.00038 29.8 6.6 113 136-263 12-134 (160)
458 PRK12744 short chain dehydroge 72.1 60 0.0013 28.9 11.2 101 159-262 8-144 (257)
459 COG5379 BtaA S-adenosylmethion 72.0 12 0.00025 34.4 6.1 44 159-203 64-107 (414)
460 PRK06172 short chain dehydroge 71.7 27 0.00058 31.0 8.7 75 159-236 7-94 (253)
461 PF12242 Eno-Rase_NADH_b: NAD( 71.6 19 0.0004 26.0 5.8 56 134-190 15-73 (78)
462 PRK05708 2-dehydropantoate 2-r 71.6 22 0.00048 33.1 8.4 98 159-264 2-105 (305)
463 cd05284 arabinose_DH_like D-ar 71.5 12 0.00026 35.0 6.7 94 158-264 167-267 (340)
464 PRK05565 fabG 3-ketoacyl-(acyl 71.4 30 0.00065 30.4 9.0 75 159-236 5-93 (247)
465 COG0863 DNA modification methy 71.4 20 0.00043 33.0 8.0 58 140-204 210-267 (302)
466 PRK07904 short chain dehydroge 71.2 28 0.0006 31.2 8.7 76 159-236 8-97 (253)
467 TIGR00675 dcm DNA-methyltransf 71.1 7.2 0.00016 36.6 5.0 64 162-233 1-66 (315)
468 PRK03562 glutathione-regulated 71.1 20 0.00043 37.2 8.5 91 159-262 400-497 (621)
469 COG1062 AdhC Zn-dependent alco 71.1 51 0.0011 31.2 10.2 95 158-265 185-287 (366)
470 cd08266 Zn_ADH_like1 Alcohol d 71.1 14 0.0003 34.3 6.9 90 158-263 166-265 (342)
471 PRK07819 3-hydroxybutyryl-CoA 71.0 20 0.00044 33.0 7.8 97 160-263 6-121 (286)
472 PRK07666 fabG 3-ketoacyl-(acyl 71.0 29 0.00063 30.5 8.7 75 159-236 7-94 (239)
473 PRK06949 short chain dehydroge 71.0 28 0.00061 30.9 8.7 75 159-236 9-96 (258)
474 PRK07890 short chain dehydroge 70.9 24 0.00053 31.3 8.3 75 159-236 5-92 (258)
475 PRK05396 tdh L-threonine 3-deh 70.8 13 0.00029 34.8 6.8 94 158-264 163-264 (341)
476 PRK13394 3-hydroxybutyrate deh 70.6 25 0.00053 31.4 8.3 77 159-238 7-96 (262)
477 PRK09496 trkA potassium transp 70.2 14 0.00031 36.3 7.1 68 158-233 230-304 (453)
478 PRK08703 short chain dehydroge 69.9 30 0.00065 30.4 8.6 76 159-236 6-97 (239)
479 PRK05872 short chain dehydroge 69.5 43 0.00094 30.8 9.8 75 159-237 9-96 (296)
480 KOG0725 Reductases with broad 69.4 91 0.002 28.5 11.8 79 159-238 8-101 (270)
481 COG1086 Predicted nucleoside-d 69.4 34 0.00073 34.6 9.2 81 159-240 250-339 (588)
482 PRK07889 enoyl-(acyl carrier p 69.4 61 0.0013 29.0 10.6 100 159-263 7-145 (256)
483 PRK07102 short chain dehydroge 68.8 31 0.00066 30.5 8.4 72 161-234 3-84 (243)
484 PRK06035 3-hydroxyacyl-CoA deh 68.8 33 0.00072 31.6 8.8 94 160-260 4-118 (291)
485 PF02826 2-Hacid_dh_C: D-isome 68.7 12 0.00026 31.7 5.5 91 158-262 35-126 (178)
486 PTZ00354 alcohol dehydrogenase 68.7 70 0.0015 29.5 11.2 93 158-263 140-240 (334)
487 PRK06500 short chain dehydroge 68.4 81 0.0018 27.7 11.2 72 159-236 6-90 (249)
488 cd08270 MDR4 Medium chain dehy 68.4 86 0.0019 28.5 11.6 88 159-263 133-222 (305)
489 PRK07062 short chain dehydroge 68.2 32 0.0007 30.8 8.5 78 159-237 8-98 (265)
490 PRK08217 fabG 3-ketoacyl-(acyl 68.1 36 0.00079 30.0 8.8 74 159-235 5-91 (253)
491 cd05288 PGDH Prostaglandin deh 68.0 50 0.0011 30.5 10.1 93 158-263 145-244 (329)
492 PRK06197 short chain dehydroge 67.9 38 0.00082 31.2 9.1 77 159-236 16-105 (306)
493 PRK09548 PTS system ascorbate- 67.8 25 0.00055 35.8 8.1 59 158-235 505-563 (602)
494 PRK12384 sorbitol-6-phosphate 67.6 36 0.00077 30.3 8.7 77 159-236 2-91 (259)
495 TIGR00853 pts-lac PTS system, 67.5 30 0.00066 26.0 6.8 74 159-258 3-76 (95)
496 cd08284 FDH_like_2 Glutathione 67.4 72 0.0016 29.7 11.1 92 158-263 167-266 (344)
497 KOG1371 UDP-glucose 4-epimeras 67.3 16 0.00034 34.2 6.1 78 159-238 2-89 (343)
498 cd05279 Zn_ADH1 Liver alcohol 67.2 23 0.0005 33.7 7.7 96 158-263 183-285 (365)
499 cd05289 MDR_like_2 alcohol deh 67.1 48 0.001 30.0 9.7 91 158-263 144-238 (309)
500 PRK09260 3-hydroxybutyryl-CoA 67.0 24 0.00052 32.5 7.5 96 161-262 3-116 (288)
No 1
>PLN02244 tocopherol O-methyltransferase
Probab=100.00 E-value=2.2e-40 Score=312.65 Aligned_cols=288 Identities=75% Similarity=1.268 Sum_probs=253.5
Q ss_pred hHHHHHHHHHHHhccchhhHHHhhcccccccccCCCCCCCcccHHHHHHHHHHHHHHHcCCCCCCCCCCCEEEEECCCcC
Q 016921 91 AARELKEGIAEFYDESSSLWEDIWGDHMHHGFYEPDSSVSVSDHRAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIG 170 (380)
Q Consensus 91 ~~~~~~~~i~~~yd~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~vLDiGcGtG 170 (380)
....+.++|+.|||..++.|+.+|++++|+|||+... ....+..++.++++.+++.+++......++.+|||||||+|
T Consensus 53 ~~~~~~~~i~~~Yd~~~~~~e~~~g~~~h~g~~~~~~--~~~~~~~aq~~~~~~~l~~~~~~~~~~~~~~~VLDiGCG~G 130 (340)
T PLN02244 53 ATADLKEGIAEFYDESSGVWEDVWGEHMHHGYYDPGA--SRGDHRQAQIRMIEESLAWAGVPDDDEKRPKRIVDVGCGIG 130 (340)
T ss_pred chhhHHHHHHHHHccchHHHHHHhCCcceeeccCCCC--CcccHHHHHHHHHHHHHHhcCCCcccCCCCCeEEEecCCCC
Confidence 3467788999999999999999999999999998753 22348889999999999998873222235889999999999
Q ss_pred hHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEEeccccCCCCCHHHHHHHHH
Q 016921 171 GSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEHMPDKSKFVSELA 250 (380)
Q Consensus 171 ~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~~~~~~l~~~~ 250 (380)
.++..+++.++++|+|+|+|+.|++.++++....++.+++.|+++|+.++++++++||+|++..+++|++|+..++++++
T Consensus 131 ~~~~~La~~~g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~FD~V~s~~~~~h~~d~~~~l~e~~ 210 (340)
T PLN02244 131 GSSRYLARKYGANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQPFEDGQFDLVWSMESGEHMPDKRKFVQELA 210 (340)
T ss_pred HHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCCCCCCCccEEEECCchhccCCHHHHHHHHH
Confidence 99999999878899999999999999999998888877899999999999999999999999999999999999999999
Q ss_pred HhcCCCcEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCcEEEEEecCCCcCCchHHH
Q 016921 251 RVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAEDWSQNVAPFWPAV 330 (380)
Q Consensus 251 r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v~~~~~~~~~~~~~~~~ 330 (380)
++|||||++++.++......+....+.......+..+...+..+.+.+.+++.++++++||+++++++|+..+.++|...
T Consensus 211 rvLkpGG~lvi~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~p~~~s~~~~~~~l~~aGf~~v~~~d~s~~v~~~~~~~ 290 (340)
T PLN02244 211 RVAAPGGRIIIVTWCHRDLEPGETSLKPDEQKLLDKICAAYYLPAWCSTSDYVKLAESLGLQDIKTEDWSEHVAPFWPAV 290 (340)
T ss_pred HHcCCCcEEEEEEecccccccccccCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHCCCCeeEeeeCcHHHHHHHHHH
Confidence 99999999999998776655554555555556666666777777788999999999999999999999999999999998
Q ss_pred HHhhhhhhhhHHHHhhchhhhhhhhhHHHHHHHHhcCceEEEEEEEecCC
Q 016921 331 IHSALTWKGFTSLLRTGLKTIKGALAMPLMIEGYQKNLIKFAIITCRKPR 380 (380)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~arKP~ 380 (380)
......+.++.+.+..+|..++..+.+..+..++..|.++|.+++||||+
T Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~kp~ 340 (340)
T PLN02244 291 IKSALTLKGLFGLLTSGWATIRGALVMPLMIKGFKKGLIKFAVITCRKPL 340 (340)
T ss_pred HHHhcCHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcCCceeeEEEEeCCC
Confidence 88888888888888899999998888888999999999999999999995
No 2
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.97 E-value=8.5e-31 Score=230.64 Aligned_cols=208 Identities=22% Similarity=0.349 Sum_probs=172.6
Q ss_pred CChhhHHHHHHHHHHHhccchhhHHHhhcccccccccCCCCCCCcccHHHHHHHHHHHHHHHcCCCCCCCCCCCEEEEEC
Q 016921 87 MSDAAARELKEGIAEFYDESSSLWEDIWGDHMHHGFYEPDSSVSVSDHRAAQVRMIEETLRFAGVSEDPTKRPKNVVDVG 166 (380)
Q Consensus 87 ~~~~~~~~~~~~i~~~yd~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~vLDiG 166 (380)
.+...++.+|++|+..||..|+. +|++.++.|.+.++..+. +. +|.+|||||
T Consensus 8 ~k~~~v~~vF~~ia~~YD~~n~~-------------------~S~g~~~~Wr~~~i~~~~----~~-----~g~~vLDva 59 (238)
T COG2226 8 EKQEKVQKVFDKVAKKYDLMNDL-------------------MSFGLHRLWRRALISLLG----IK-----PGDKVLDVA 59 (238)
T ss_pred ccHHHHHHHHHhhHHHHHhhccc-------------------ccCcchHHHHHHHHHhhC----CC-----CCCEEEEec
Confidence 34567999999999999999977 667778888888776543 22 389999999
Q ss_pred CCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEEeccccCCCCCHHHH
Q 016921 167 CGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEHMPDKSKF 245 (380)
Q Consensus 167 cGtG~~~~~l~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~~~~~~ 245 (380)
||||.++..+++.. .++|+|+|+|+.|++.|+++..+.++.. ++|+++|++++||++++||+|++.++|++++|++++
T Consensus 60 ~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~-i~fv~~dAe~LPf~D~sFD~vt~~fglrnv~d~~~a 138 (238)
T COG2226 60 CGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQN-VEFVVGDAENLPFPDNSFDAVTISFGLRNVTDIDKA 138 (238)
T ss_pred CCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCccc-eEEEEechhhCCCCCCccCEEEeeehhhcCCCHHHH
Confidence 99999999999987 5799999999999999999998877754 999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCcEEEEEeccCCCCCCCccccchHHHH-HHHHHhhccC------------CCCCCCHHHHHHHHHhCCCc
Q 016921 246 VSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQE-LLKKICDAYY------------LPAWCSTADYVKLLQSLSLE 312 (380)
Q Consensus 246 l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~------------~~~~~~~~~~~~ll~~aGf~ 312 (380)
|+|++|+|||||++++.++..+...+....+..+... .+..+..... +..+.+++++.++++++||.
T Consensus 139 L~E~~RVlKpgG~~~vle~~~p~~~~~~~~~~~~~~~~v~P~~g~~~~~~~~~y~yL~eSi~~~p~~~~l~~~~~~~gf~ 218 (238)
T COG2226 139 LKEMYRVLKPGGRLLVLEFSKPDNPVLRKAYILYYFKYVLPLIGKLVAKDAEAYEYLAESIRRFPDQEELKQMIEKAGFE 218 (238)
T ss_pred HHHHHHhhcCCeEEEEEEcCCCCchhhHHHHHHHHHHhHhhhhceeeecChHHHHHHHHHHHhCCCHHHHHHHHHhcCce
Confidence 9999999999999999999877665554445545444 3333222221 12368999999999999999
Q ss_pred EEEEEecCCCc
Q 016921 313 DIKAEDWSQNV 323 (380)
Q Consensus 313 ~v~~~~~~~~~ 323 (380)
.+..+.+...+
T Consensus 219 ~i~~~~~~~G~ 229 (238)
T COG2226 219 EVRYENLTFGI 229 (238)
T ss_pred EEeeEeeeeee
Confidence 99877776554
No 3
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=99.97 E-value=3e-30 Score=222.07 Aligned_cols=215 Identities=17% Similarity=0.247 Sum_probs=175.1
Q ss_pred cCCcccccCChhhHHHHHHHHHHHhccchhhHHHhhcccccccccCCCCCCCcccHHHHHHHHHHHHHHHcCCCCCCCCC
Q 016921 79 SSTTSTTTMSDAAARELKEGIAEFYDESSSLWEDIWGDHMHHGFYEPDSSVSVSDHRAAQVRMIEETLRFAGVSEDPTKR 158 (380)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~i~~~yd~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~ 158 (380)
...+..+..++..+..+|++++.+||.+|+. ++++.||.|+...+.. +... +
T Consensus 49 gf~tV~e~eke~~V~~vF~~vA~~YD~mND~-------------------mSlGiHRlWKd~~v~~----L~p~-----~ 100 (296)
T KOG1540|consen 49 GFKTVRESEKERLVHHVFESVAKKYDIMNDA-------------------MSLGIHRLWKDMFVSK----LGPG-----K 100 (296)
T ss_pred cccccchhhhhhHHHHHHHHHHHHHHHHHHH-------------------hhcchhHHHHHHhhhc----cCCC-----C
Confidence 3444555667778999999999999999988 7778899886665543 3333 3
Q ss_pred CCEEEEECCCcChHHHHHHHHc-C------CEEEEEeCCHHHHHHHHHHHHHcCCCCC--eEEEEcCCCCCCCCCCCccE
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKF-G------AKCQGITLSPVQAQRANALAAARGLADK--VSFQVGDALQQPFPDGQFDL 229 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~-~------~~v~giD~s~~~~~~a~~~~~~~~~~~~--v~~~~~d~~~~~~~~~~fD~ 229 (380)
+.++||++||||..+..+.+.. . .+|++.|+||.|++.++++..+.++..+ +.|+.+|++++||++++||+
T Consensus 101 ~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~LpFdd~s~D~ 180 (296)
T KOG1540|consen 101 GMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDLPFDDDSFDA 180 (296)
T ss_pred CCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccCCCCCCccee
Confidence 8999999999999999999876 2 6899999999999999999988777554 99999999999999999999
Q ss_pred EEeccccCCCCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchHHHHHHHHHhhc------------cCCCCCC
Q 016921 230 VWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDA------------YYLPAWC 297 (380)
Q Consensus 230 V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~ 297 (380)
+++.+.|.+++++++++++++|+|||||++.+.+|...++.+....++.+..+.+..+... ..+.++.
T Consensus 181 yTiafGIRN~th~~k~l~EAYRVLKpGGrf~cLeFskv~~~~l~~fy~~ysf~VlpvlG~~iagd~~sYqYLveSI~rfp 260 (296)
T KOG1540|consen 181 YTIAFGIRNVTHIQKALREAYRVLKPGGRFSCLEFSKVENEPLKWFYDQYSFDVLPVLGEIIAGDRKSYQYLVESIRRFP 260 (296)
T ss_pred EEEecceecCCCHHHHHHHHHHhcCCCcEEEEEEccccccHHHHHHHHhhhhhhhchhhHhhhhhHhhhhhHHhhhhcCC
Confidence 9999999999999999999999999999999999988776555555555554444322211 1345678
Q ss_pred CHHHHHHHHHhCCCcEEE-EEecCC
Q 016921 298 STADYVKLLQSLSLEDIK-AEDWSQ 321 (380)
Q Consensus 298 ~~~~~~~ll~~aGf~~v~-~~~~~~ 321 (380)
+.+++..++++|||..+. .+.+..
T Consensus 261 ~qe~f~~miedaGF~~~~~ye~lt~ 285 (296)
T KOG1540|consen 261 PQEEFASMIEDAGFSSVNGYENLTF 285 (296)
T ss_pred CHHHHHHHHHHcCCcccccccccee
Confidence 999999999999999986 554443
No 4
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.97 E-value=3.2e-28 Score=217.74 Aligned_cols=264 Identities=21% Similarity=0.242 Sum_probs=202.1
Q ss_pred HHHHHHHHHhccchhhHHHhhccccc--ccccCCCCCCCcccHHHHHHHHHHHHHHHcCCCCCCCCCCCEEEEECCCcCh
Q 016921 94 ELKEGIAEFYDESSSLWEDIWGDHMH--HGFYEPDSSVSVSDHRAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGG 171 (380)
Q Consensus 94 ~~~~~i~~~yd~~~~~y~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~vLDiGcGtG~ 171 (380)
...++|+.|||..+++|..++++.+. ++||..+..+ +.+++...++.+++++.+++ |.+|||||||+|.
T Consensus 15 ~~~~~i~~HYDl~n~fy~l~Ld~~~~Yscayf~~~~~t----L~eAQ~~k~~~~~~kl~L~~-----G~~lLDiGCGWG~ 85 (283)
T COG2230 15 RAAENIQAHYDLSNDFYRLFLDPSMTYSCAYFEDPDMT----LEEAQRAKLDLILEKLGLKP-----GMTLLDIGCGWGG 85 (283)
T ss_pred chhhhhhhHhhcchHHHHHhcCCCCceeeEEeCCCCCC----hHHHHHHHHHHHHHhcCCCC-----CCEEEEeCCChhH
Confidence 55667999999999999999998665 5899877643 78899999999999999886 9999999999999
Q ss_pred HHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEEeccccCCCCC--HHHHHHHH
Q 016921 172 SSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEHMPD--KSKFVSEL 249 (380)
Q Consensus 172 ~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~~--~~~~l~~~ 249 (380)
+++.+|++++.+|+|+++|++|.+.+++++.+.|+..+++++..|..+++ +.||.|++.++++|+.. ...+++.+
T Consensus 86 l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~---e~fDrIvSvgmfEhvg~~~~~~ff~~~ 162 (283)
T COG2230 86 LAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDFE---EPFDRIVSVGMFEHVGKENYDDFFKKV 162 (283)
T ss_pred HHHHHHHHcCCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEeccccccc---cccceeeehhhHHHhCcccHHHHHHHH
Confidence 99999999999999999999999999999999999889999999998875 45999999999999965 89999999
Q ss_pred HHhcCCCcEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCcEEEEEecCCCcCCchHH
Q 016921 250 ARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAEDWSQNVAPFWPA 329 (380)
Q Consensus 250 ~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v~~~~~~~~~~~~~~~ 329 (380)
+++|+|||.+++..+........ ....| ....+.++... ++..++.+..+++||++.+.+.+..+.......
T Consensus 163 ~~~L~~~G~~llh~I~~~~~~~~--~~~~~---i~~yiFPgG~l---Ps~~~i~~~~~~~~~~v~~~~~~~~hYa~Tl~~ 234 (283)
T COG2230 163 YALLKPGGRMLLHSITGPDQEFR--RFPDF---IDKYIFPGGEL---PSISEILELASEAGFVVLDVESLRPHYARTLRL 234 (283)
T ss_pred HhhcCCCceEEEEEecCCCcccc--cchHH---HHHhCCCCCcC---CCHHHHHHHHHhcCcEEehHhhhcHHHHHHHHH
Confidence 99999999999998765543211 12222 22234444443 467899999999999999988888776544333
Q ss_pred HHHhhhhh-hhhHHHHhhchhhhhhhhhHHHHHHHHhcCceEEEEEEEec
Q 016921 330 VIHSALTW-KGFTSLLRTGLKTIKGALAMPLMIEGYQKNLIKFAIITCRK 378 (380)
Q Consensus 330 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~arK 378 (380)
+....... ..+... .+..........+.....+++.+......++..|
T Consensus 235 W~~~f~~~~~~a~~~-~~e~~~r~w~~yl~~~~~~Fr~~~~~~~q~~~~k 283 (283)
T COG2230 235 WRERFEANRDEAIAL-YDERFYRMWELYLAACAAAFRAGYIDVFQFTLTK 283 (283)
T ss_pred HHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHHHhccCCceEEEEEeeC
Confidence 33333221 111111 1111112233345556677888888777776654
No 5
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.96 E-value=1.5e-28 Score=223.69 Aligned_cols=221 Identities=26% Similarity=0.419 Sum_probs=158.1
Q ss_pred HHHHHHHHHhccchhhHHHhhcccccc--cccCCCCCCCcccHHHHHHHHHHHHHHHcCCCCCCCCCCCEEEEECCCcCh
Q 016921 94 ELKEGIAEFYDESSSLWEDIWGDHMHH--GFYEPDSSVSVSDHRAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGG 171 (380)
Q Consensus 94 ~~~~~i~~~yd~~~~~y~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~vLDiGcGtG~ 171 (380)
...++|+.|||..+++|..++++.+++ +||...... +..++.++++.+++++.+++ +.+|||||||.|.
T Consensus 5 ~~~~~i~~hYDl~ndfy~l~Ld~~m~YS~~~~~~~~~~----Le~AQ~~k~~~~~~~~~l~~-----G~~vLDiGcGwG~ 75 (273)
T PF02353_consen 5 QSRENISAHYDLGNDFYRLFLDPTMKYSCAYFDEGDDT----LEEAQERKLDLLCEKLGLKP-----GDRVLDIGCGWGG 75 (273)
T ss_dssp --HHHHHHHHTS-HHHHTTTS-TT---S----SSTT------HHHHHHHHHHHHHTTTT--T-----T-EEEEES-TTSH
T ss_pred hHHHHHHHHcCCcHHHHHHhcCCCCCCCCeecCCchhh----HHHHHHHHHHHHHHHhCCCC-----CCEEEEeCCCccH
Confidence 456779999999999999999998885 699875433 88999999999999998876 9999999999999
Q ss_pred HHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEEeccccCCC--CCHHHHHHHH
Q 016921 172 SSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEHM--PDKSKFVSEL 249 (380)
Q Consensus 172 ~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~~--~~~~~~l~~~ 249 (380)
++..+++++|++|+|+++|+++.+.+++++.+.|+++++.+...|..+++ .+||.|++..+++|+ .+...+++++
T Consensus 76 ~~~~~a~~~g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~---~~fD~IvSi~~~Ehvg~~~~~~~f~~~ 152 (273)
T PF02353_consen 76 LAIYAAERYGCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDLP---GKFDRIVSIEMFEHVGRKNYPAFFRKI 152 (273)
T ss_dssp HHHHHHHHH--EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG------S-SEEEEESEGGGTCGGGHHHHHHHH
T ss_pred HHHHHHHHcCcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccccC---CCCCEEEEEechhhcChhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998875 399999999999999 4678999999
Q ss_pred HHhcCCCcEEEEEeccCCCCCCCcc-ccchHHHHHHH-HHhhccCCCCCCCHHHHHHHHHhCCCcEEEEEecCCCcCCch
Q 016921 250 ARVTAPAGTIIIVTWCHRDLAPSEE-SLQPWEQELLK-KICDAYYLPAWCSTADYVKLLQSLSLEDIKAEDWSQNVAPFW 327 (380)
Q Consensus 250 ~r~LkpgG~l~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ll~~aGf~~v~~~~~~~~~~~~~ 327 (380)
.++|||||.+++..+.......... ... ..++. .++.... .++.+++...++++||++++++++..+.....
T Consensus 153 ~~~LkpgG~~~lq~i~~~~~~~~~~~~~~---~~~i~kyiFPgg~---lps~~~~~~~~~~~~l~v~~~~~~~~hY~~Tl 226 (273)
T PF02353_consen 153 SRLLKPGGRLVLQTITHRDPPYHAERRSS---SDFIRKYIFPGGY---LPSLSEILRAAEDAGLEVEDVENLGRHYARTL 226 (273)
T ss_dssp HHHSETTEEEEEEEEEE--HHHHHCTTCC---CHHHHHHTSTTS------BHHHHHHHHHHTT-EEEEEEE-HHHHHHHH
T ss_pred HHhcCCCcEEEEEecccccccchhhcCCC---ceEEEEeeCCCCC---CCCHHHHHHHHhcCCEEEEEEEEcCcCHHHHH
Confidence 9999999999998776443211110 000 02222 2233333 34788999999999999999998887766544
Q ss_pred HHHHH
Q 016921 328 PAVIH 332 (380)
Q Consensus 328 ~~~~~ 332 (380)
..+..
T Consensus 227 ~~W~~ 231 (273)
T PF02353_consen 227 RAWRE 231 (273)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44433
No 6
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.96 E-value=4.8e-30 Score=228.50 Aligned_cols=208 Identities=25% Similarity=0.421 Sum_probs=94.7
Q ss_pred CChhhHHHHHHHHHHHhccchhhHHHhhcccccccccCCCCCCCcccHHHHHHHHHHHHHHHcCCCCCCCCCCCEEEEEC
Q 016921 87 MSDAAARELKEGIAEFYDESSSLWEDIWGDHMHHGFYEPDSSVSVSDHRAAQVRMIEETLRFAGVSEDPTKRPKNVVDVG 166 (380)
Q Consensus 87 ~~~~~~~~~~~~i~~~yd~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~vLDiG 166 (380)
.+.+.+..+|+.|+..||..|+. .+++.++.|....++. .... ++.+|||+|
T Consensus 4 ~k~~~v~~~Fd~ia~~YD~~n~~-------------------ls~g~~~~wr~~~~~~----~~~~-----~g~~vLDv~ 55 (233)
T PF01209_consen 4 AKEQYVRKMFDRIAPRYDRMNDL-------------------LSFGQDRRWRRKLIKL----LGLR-----PGDRVLDVA 55 (233)
T ss_dssp ----------------------------------------------------SHHHHH----HT-------S--EEEEET
T ss_pred cHHHHHHHHHHHHHHHhCCCccc-------------------cCCcHHHHHHHHHHhc----cCCC-----CCCEEEEeC
Confidence 35567899999999999998876 3333345555544332 2333 388999999
Q ss_pred CCcChHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEEeccccCCCCCHHH
Q 016921 167 CGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEHMPDKSK 244 (380)
Q Consensus 167 cGtG~~~~~l~~~~--~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~~~~~ 244 (380)
||||.++..+++.. ..+|+|+|+|+.|++.|+++....+.. +++++++|++++|+++++||+|++.+++++++|+.+
T Consensus 56 ~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~-~i~~v~~da~~lp~~d~sfD~v~~~fglrn~~d~~~ 134 (233)
T PF01209_consen 56 CGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQ-NIEFVQGDAEDLPFPDNSFDAVTCSFGLRNFPDRER 134 (233)
T ss_dssp -TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT---SEEEEE-BTTB--S-TT-EEEEEEES-GGG-SSHHH
T ss_pred CChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCC-CeeEEEcCHHHhcCCCCceeEEEHHhhHHhhCCHHH
Confidence 99999999999876 479999999999999999999887764 899999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCcEEEEEeccCCCCCCCccccchHHHHHHHHHh-------hcc-----CCCCCCCHHHHHHHHHhCCCc
Q 016921 245 FVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKIC-------DAY-----YLPAWCSTADYVKLLQSLSLE 312 (380)
Q Consensus 245 ~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~-----~~~~~~~~~~~~~ll~~aGf~ 312 (380)
+++|++|+|||||++++.+++.+........+.-+....+..+. ..+ .+..+.+.+++.++|+++||+
T Consensus 135 ~l~E~~RVLkPGG~l~ile~~~p~~~~~~~~~~~y~~~ilP~~g~l~~~~~~~Y~yL~~Si~~f~~~~~~~~~l~~~Gf~ 214 (233)
T PF01209_consen 135 ALREMYRVLKPGGRLVILEFSKPRNPLLRALYKFYFKYILPLIGRLLSGDREAYRYLPESIRRFPSPEELKELLEEAGFK 214 (233)
T ss_dssp HHHHHHHHEEEEEEEEEEEEEB-SSHHHHHHHHH----------------------------------------------
T ss_pred HHHHHHHHcCCCeEEEEeeccCCCCchhhceeeeeecccccccccccccccccccccccccccccccccccccccccccc
Confidence 99999999999999999998765432221111111111111111 111 223477899999999999999
Q ss_pred EEEEEecCCCc
Q 016921 313 DIKAEDWSQNV 323 (380)
Q Consensus 313 ~v~~~~~~~~~ 323 (380)
.++.+.+...+
T Consensus 215 ~v~~~~~~~G~ 225 (233)
T PF01209_consen 215 NVEYRPLTFGI 225 (233)
T ss_dssp -----------
T ss_pred ccccccccccc
Confidence 99887766554
No 7
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.95 E-value=2.8e-26 Score=209.13 Aligned_cols=241 Identities=21% Similarity=0.387 Sum_probs=174.2
Q ss_pred cchhhHHHhhcc-cccccccCCCCCCCcccHHHHHHHHHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCE
Q 016921 105 ESSSLWEDIWGD-HMHHGFYEPDSSVSVSDHRAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAK 183 (380)
Q Consensus 105 ~~~~~y~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~ 183 (380)
.....|+.++|. .+|.+ . ......++..+.+.+ +.+|||||||+|..+..+++..+++
T Consensus 19 ~~~~~~e~~~g~~~~~~g-----g-----------~~~~~~~l~~l~l~~-----~~~VLDiGcG~G~~a~~la~~~~~~ 77 (263)
T PTZ00098 19 EGIKAYEFIFGEDYISSG-----G-----------IEATTKILSDIELNE-----NSKVLDIGSGLGGGCKYINEKYGAH 77 (263)
T ss_pred ccchhHHHHhCCCCCCCC-----c-----------hHHHHHHHHhCCCCC-----CCEEEEEcCCCChhhHHHHhhcCCE
Confidence 456788988885 33432 1 113456667666654 8999999999999999998876789
Q ss_pred EEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEEeccccCCCC--CHHHHHHHHHHhcCCCcEEEE
Q 016921 184 CQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEHMP--DKSKFVSELARVTAPAGTIII 261 (380)
Q Consensus 184 v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~--~~~~~l~~~~r~LkpgG~l~~ 261 (380)
|+|+|+|+.|++.|+++... ..++.+..+|+.+.++++++||+|++..+++|++ ++..++++++++|||||.+++
T Consensus 78 v~giD~s~~~~~~a~~~~~~---~~~i~~~~~D~~~~~~~~~~FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi 154 (263)
T PTZ00098 78 VHGVDICEKMVNIAKLRNSD---KNKIEFEANDILKKDFPENTFDMIYSRDAILHLSYADKKKLFEKCYKWLKPNGILLI 154 (263)
T ss_pred EEEEECCHHHHHHHHHHcCc---CCceEEEECCcccCCCCCCCeEEEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEE
Confidence 99999999999999987643 2579999999998888889999999999999986 789999999999999999999
Q ss_pred EeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCcEEEEEecCCCcCCchHHHHHhhhhhh-hh
Q 016921 262 VTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAEDWSQNVAPFWPAVIHSALTWK-GF 340 (380)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v~~~~~~~~~~~~~~~~~~~~~~~~-~~ 340 (380)
.++....... ... . +....... ...+.+.+++.++|+++||++++.++.+..+..++..........+ .+
T Consensus 155 ~d~~~~~~~~----~~~---~-~~~~~~~~-~~~~~~~~~~~~~l~~aGF~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~ 225 (263)
T PTZ00098 155 TDYCADKIEN----WDE---E-FKAYIKKR-KYTLIPIQEYGDLIKSCNFQNVVAKDISDYWLELLQVELKKLEEKKEEF 225 (263)
T ss_pred EEeccccccC----cHH---H-HHHHHHhc-CCCCCCHHHHHHHHHHCCCCeeeEEeCcHHHHHHHHHHHHHHHHhHHHH
Confidence 9876543211 111 1 11111111 1235689999999999999999999888766555544433332221 11
Q ss_pred HHHHhhchhhhhhhhhHHHHHHHHhcCceEEEEEEEecC
Q 016921 341 TSLLRTGLKTIKGALAMPLMIEGYQKNLIKFAIITCRKP 379 (380)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~arKP 379 (380)
...+ ..............+.+..+.|...|+++.|+||
T Consensus 226 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~wg~~~~~~~ 263 (263)
T PTZ00098 226 LKLY-SEKEYNSLKDGWTRKIKDTKRKLQKWGYFKAQKM 263 (263)
T ss_pred HHhc-CHHHHHHHHHHHHHHHHHhhccccccceEeecCC
Confidence 1110 1111133444567788888999999999999996
No 8
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.94 E-value=7e-25 Score=199.73 Aligned_cols=165 Identities=21% Similarity=0.290 Sum_probs=125.7
Q ss_pred CCCEEEEECCCcChHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHH--cCCCCCeEEEEcCCCCCCCCCCCccEEEec
Q 016921 158 RPKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAA--RGLADKVSFQVGDALQQPFPDGQFDLVWSM 233 (380)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~--~~~v~giD~s~~~~~~a~~~~~~--~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~ 233 (380)
++.+|||||||+|.++..+++.. ..+|+|+|+|++|++.|+++... .....++.++++|++++|+++++||+|++.
T Consensus 73 ~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~V~~~ 152 (261)
T PLN02233 73 MGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFDDCYFDAITMG 152 (261)
T ss_pred CCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCCCCCEeEEEEe
Confidence 38899999999999999998875 36999999999999999887542 223357999999999999999999999999
Q ss_pred cccCCCCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchHHHHH-HHHHhhc-----------cCCCCCCCHHH
Q 016921 234 ESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQEL-LKKICDA-----------YYLPAWCSTAD 301 (380)
Q Consensus 234 ~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-----------~~~~~~~~~~~ 301 (380)
++++|++++..++++++|+|||||++++.++....... ...+..+.... +...... ..+..+.++++
T Consensus 153 ~~l~~~~d~~~~l~ei~rvLkpGG~l~i~d~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~y~~l~~s~~~f~s~~e 231 (261)
T PLN02233 153 YGLRNVVDRLKAMQEMYRVLKPGSRVSILDFNKSTQPF-TTSMQEWMIDNVVVPVATGYGLAKEYEYLKSSINEYLTGEE 231 (261)
T ss_pred cccccCCCHHHHHHHHHHHcCcCcEEEEEECCCCCcHH-HHHHHHHHHhhhhhHHHHHhCChHHHHHHHHHHHhcCCHHH
Confidence 99999999999999999999999999999987543211 11111111110 0001000 01124679999
Q ss_pred HHHHHHhCCCcEEEEEecCCCc
Q 016921 302 YVKLLQSLSLEDIKAEDWSQNV 323 (380)
Q Consensus 302 ~~~ll~~aGf~~v~~~~~~~~~ 323 (380)
+.++|+++||+++....+...+
T Consensus 232 l~~ll~~aGF~~~~~~~~~~g~ 253 (261)
T PLN02233 232 LEKLALEAGFSSAKHYEISGGL 253 (261)
T ss_pred HHHHHHHCCCCEEEEEEcCCCe
Confidence 9999999999999887765443
No 9
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=99.92 E-value=3.2e-23 Score=197.98 Aligned_cols=259 Identities=19% Similarity=0.225 Sum_probs=184.7
Q ss_pred HHHHHHHHHHhccchhhHHHhhccccc--ccccCCCCCCCcccHHHHHHHHHHHHHHHcCCCCCCCCCCCEEEEECCCcC
Q 016921 93 RELKEGIAEFYDESSSLWEDIWGDHMH--HGFYEPDSSVSVSDHRAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIG 170 (380)
Q Consensus 93 ~~~~~~i~~~yd~~~~~y~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~vLDiGcGtG 170 (380)
....++|+.|||..+++|..++++.++ ++||.... .+..++.+.++.+++.+.+++ +.+|||||||+|
T Consensus 110 ~~~~~~i~~hYd~~n~~y~l~ld~~m~ys~g~~~~~~-----~L~~Aq~~k~~~l~~~l~l~~-----g~rVLDIGcG~G 179 (383)
T PRK11705 110 KRAWIVGKEHYDLGNDLFEAMLDPRMQYSCGYWKDAD-----TLEEAQEAKLDLICRKLQLKP-----GMRVLDIGCGWG 179 (383)
T ss_pred hhHHHhhhhhcCCcHHHHHHhcCCCCcccccccCCCC-----CHHHHHHHHHHHHHHHhCCCC-----CCEEEEeCCCcc
Confidence 456778999999999999999998765 58886432 377888899999999887765 899999999999
Q ss_pred hHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEEeccccCCCCC--HHHHHHH
Q 016921 171 GSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEHMPD--KSKFVSE 248 (380)
Q Consensus 171 ~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~~--~~~~l~~ 248 (380)
.++..+++..+++|+|+|+|++|++.|+++.. ++ ++++...|+.++ +++||.|++..+++|+.+ ...++++
T Consensus 180 ~~a~~la~~~g~~V~giDlS~~~l~~A~~~~~--~l--~v~~~~~D~~~l---~~~fD~Ivs~~~~ehvg~~~~~~~l~~ 252 (383)
T PRK11705 180 GLARYAAEHYGVSVVGVTISAEQQKLAQERCA--GL--PVEIRLQDYRDL---NGQFDRIVSVGMFEHVGPKNYRTYFEV 252 (383)
T ss_pred HHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhc--cC--eEEEEECchhhc---CCCCCEEEEeCchhhCChHHHHHHHHH
Confidence 99999998778899999999999999999874 32 488888898765 478999999999999954 5789999
Q ss_pred HHHhcCCCcEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCcEEEEEecCCCcCCchH
Q 016921 249 LARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAEDWSQNVAPFWP 328 (380)
Q Consensus 249 ~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v~~~~~~~~~~~~~~ 328 (380)
+.++|||||.+++.++......... ..+... .+.... ...+.+++...++ .||++.+++.+..++.....
T Consensus 253 i~r~LkpGG~lvl~~i~~~~~~~~~---~~~i~~---yifp~g---~lps~~~i~~~~~-~~~~v~d~~~~~~hy~~TL~ 322 (383)
T PRK11705 253 VRRCLKPDGLFLLHTIGSNKTDTNV---DPWINK---YIFPNG---CLPSVRQIAQASE-GLFVMEDWHNFGADYDRTLM 322 (383)
T ss_pred HHHHcCCCcEEEEEEccCCCCCCCC---CCCcee---eecCCC---cCCCHHHHHHHHH-CCcEEEEEecChhhHHHHHH
Confidence 9999999999999887544322111 111100 011111 1347788888766 59999998888877654433
Q ss_pred HHHHhhhhh-hhhHHHHhhchhhhhhhhhHHHHHHHHhcCceEEEEEEEecC
Q 016921 329 AVIHSALTW-KGFTSLLRTGLKTIKGALAMPLMIEGYQKNLIKFAIITCRKP 379 (380)
Q Consensus 329 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~arKP 379 (380)
.+....... ..+.......+ .......+.....+++.|.+..+.+++.||
T Consensus 323 ~W~~~f~~~~~~~~~~~~~~~-~r~w~~yl~~~~~~F~~~~~~~~q~~~~~~ 373 (383)
T PRK11705 323 AWHENFEAAWPELADNYSERF-YRMWRYYLLSCAGAFRARDIQLWQVVFSPR 373 (383)
T ss_pred HHHHHHHHHHHHHHHhCCHHH-HHHHHHHHHHHHHHHhCCCceEEEEEEEeC
Confidence 333222211 11211111111 011222344556778888888888888885
No 10
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.91 E-value=7.1e-23 Score=202.94 Aligned_cols=220 Identities=23% Similarity=0.330 Sum_probs=156.3
Q ss_pred HHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC
Q 016921 142 IEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP 221 (380)
Q Consensus 142 ~~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~ 221 (380)
.+.+++.+.+. ++.+|||||||+|..+..+++..+++|+|+|+|+.+++.|+++.. +...++.|.++|+...+
T Consensus 255 te~l~~~~~~~-----~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A~~~~~--~~~~~v~~~~~d~~~~~ 327 (475)
T PLN02336 255 TKEFVDKLDLK-----PGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFALERAI--GRKCSVEFEVADCTKKT 327 (475)
T ss_pred HHHHHHhcCCC-----CCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHhh--cCCCceEEEEcCcccCC
Confidence 34455555443 378999999999999999998778899999999999999988764 33457999999999988
Q ss_pred CCCCCccEEEeccccCCCCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHHH
Q 016921 222 FPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTAD 301 (380)
Q Consensus 222 ~~~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (380)
+++++||+|++..+++|++++..++++++++|||||.+++.++......+.. .....+.. .+ ....+.++
T Consensus 328 ~~~~~fD~I~s~~~l~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~-----~~~~~~~~----~g-~~~~~~~~ 397 (475)
T PLN02336 328 YPDNSFDVIYSRDTILHIQDKPALFRSFFKWLKPGGKVLISDYCRSPGTPSP-----EFAEYIKQ----RG-YDLHDVQA 397 (475)
T ss_pred CCCCCEEEEEECCcccccCCHHHHHHHHHHHcCCCeEEEEEEeccCCCCCcH-----HHHHHHHh----cC-CCCCCHHH
Confidence 8888999999999999999999999999999999999999987654322211 11111211 11 12468899
Q ss_pred HHHHHHhCCCcEEEEEecCCCcCCchHHHHHhhhhh-hhhHHHHhhchhhhhhhhhHHHHHHHHhcCceEEEEEEEecC
Q 016921 302 YVKLLQSLSLEDIKAEDWSQNVAPFWPAVIHSALTW-KGFTSLLRTGLKTIKGALAMPLMIEGYQKNLIKFAIITCRKP 379 (380)
Q Consensus 302 ~~~ll~~aGf~~v~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~arKP 379 (380)
+.++++++||+++.+++++..+..+........... ..+... .................+.+..+..+|++++|||.
T Consensus 398 ~~~~l~~aGF~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~wg~~~a~k~ 475 (475)
T PLN02336 398 YGQMLKDAGFDDVIAEDRTDQFLQVLQRELDAVEKEKDEFISD-FSEEDYNDIVGGWKAKLVRSSSGEQKWGLFIAKKK 475 (475)
T ss_pred HHHHHHHCCCeeeeeecchHHHHHHHHHHHHHHHhCHHHHHHh-cCHHHHHHHHHhHHHHHhhhcCCceeeEEEEEecC
Confidence 999999999999999888876543332222221111 111110 01111122233344455666678899999999984
No 11
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.91 E-value=1.7e-22 Score=187.73 Aligned_cols=157 Identities=20% Similarity=0.281 Sum_probs=123.0
Q ss_pred CCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEEeccccC
Q 016921 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGE 237 (380)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~ 237 (380)
++.+|||||||+|.++..+++. +++|+|+|+++.+++.|+++....+...+++++++|++++++++++||+|++.++++
T Consensus 131 ~g~~ILDIGCG~G~~s~~La~~-g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~vLe 209 (322)
T PLN02396 131 EGLKFIDIGCGGGLLSEPLARM-GATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEVIE 209 (322)
T ss_pred CCCEEEEeeCCCCHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEhhHHH
Confidence 4779999999999999999875 889999999999999999887655544589999999999887788999999999999
Q ss_pred CCCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccc-hH-HHHHHHHHh-hc-cCCCCCCCHHHHHHHHHhCCCcE
Q 016921 238 HMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQ-PW-EQELLKKIC-DA-YYLPAWCSTADYVKLLQSLSLED 313 (380)
Q Consensus 238 ~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~-~~-~~~~~~~~~~~~~~ll~~aGf~~ 313 (380)
|+.|+..+++++.++|||||.+++.++..... .+. .. ....+..+. .. .....+++++++..+|+++||++
T Consensus 210 Hv~d~~~~L~~l~r~LkPGG~liist~nr~~~-----~~~~~i~~~eyi~~~lp~gth~~~~f~tp~eL~~lL~~aGf~i 284 (322)
T PLN02396 210 HVANPAEFCKSLSALTIPNGATVLSTINRTMR-----AYASTIVGAEYILRWLPKGTHQWSSFVTPEELSMILQRASVDV 284 (322)
T ss_pred hcCCHHHHHHHHHHHcCCCcEEEEEECCcCHH-----HHHHhhhhHHHHHhcCCCCCcCccCCCCHHHHHHHHHHcCCeE
Confidence 99999999999999999999999998542210 000 00 001111111 11 11224689999999999999999
Q ss_pred EEEEecC
Q 016921 314 IKAEDWS 320 (380)
Q Consensus 314 v~~~~~~ 320 (380)
+++..+.
T Consensus 285 ~~~~G~~ 291 (322)
T PLN02396 285 KEMAGFV 291 (322)
T ss_pred EEEeeeE
Confidence 9886544
No 12
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.91 E-value=1e-22 Score=183.00 Aligned_cols=201 Identities=19% Similarity=0.304 Sum_probs=147.9
Q ss_pred hhhHHHHHHHHHHHhccchhhHHHhhcccccccccCCCCCCCcccHHHHHHHHHHHHHHHcCCCCCCCCCCCEEEEECCC
Q 016921 89 DAAARELKEGIAEFYDESSSLWEDIWGDHMHHGFYEPDSSVSVSDHRAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCG 168 (380)
Q Consensus 89 ~~~~~~~~~~i~~~yd~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~vLDiGcG 168 (380)
...+..+++.++.+||..+... ++.....+. +.++..+.+.+ +.+|||+|||
T Consensus 4 ~~~~~~~f~~~a~~yd~~~~~~-------------------~~~~~~~~~----~~~l~~l~~~~-----~~~vLDiGcG 55 (231)
T TIGR02752 4 EERVHKVFEKIYKKYDRMNSVI-------------------SFQRHKKWR----KDTMKRMNVQA-----GTSALDVCCG 55 (231)
T ss_pred HHHHHHHHHHhhhHHhHHHHHh-------------------cCCchHHHH----HHHHHhcCCCC-----CCEEEEeCCC
Confidence 4557788888888888765432 111122232 33444555443 8899999999
Q ss_pred cChHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEEeccccCCCCCHHHHH
Q 016921 169 IGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEHMPDKSKFV 246 (380)
Q Consensus 169 tG~~~~~l~~~~--~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~~~~~~l 246 (380)
+|.++..+++.. +.+|+|+|+++.+++.++++....++ ++++++.+|+.++++++++||+|++..+++|++++.+++
T Consensus 56 ~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~~~~~~l 134 (231)
T TIGR02752 56 TADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGL-HNVELVHGNAMELPFDDNSFDYVTIGFGLRNVPDYMQVL 134 (231)
T ss_pred cCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCC-CceEEEEechhcCCCCCCCccEEEEecccccCCCHHHHH
Confidence 999999999875 46999999999999999999877666 589999999999888889999999999999999999999
Q ss_pred HHHHHhcCCCcEEEEEeccCCCCCCCccccchHHHHH-------HHHHh---------hccCCCCCCCHHHHHHHHHhCC
Q 016921 247 SELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQEL-------LKKIC---------DAYYLPAWCSTADYVKLLQSLS 310 (380)
Q Consensus 247 ~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~---------~~~~~~~~~~~~~~~~ll~~aG 310 (380)
+++.++|+|||.+++.+...++.. .+....... +.... .......+++.+++.++|+++|
T Consensus 135 ~~~~~~Lk~gG~l~~~~~~~~~~~----~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aG 210 (231)
T TIGR02752 135 REMYRVVKPGGKVVCLETSQPTIP----GFKQLYFFYFKYIMPLFGKLFAKSYKEYSWLQESTRDFPGMDELAEMFQEAG 210 (231)
T ss_pred HHHHHHcCcCeEEEEEECCCCCCh----HHHHHHHHHHcChhHHhhHHhcCCHHHHHHHHHHHHHcCCHHHHHHHHHHcC
Confidence 999999999999999886543321 111110000 00000 0001224578999999999999
Q ss_pred CcEEEEEecCCC
Q 016921 311 LEDIKAEDWSQN 322 (380)
Q Consensus 311 f~~v~~~~~~~~ 322 (380)
|++++++.+...
T Consensus 211 f~~~~~~~~~~g 222 (231)
T TIGR02752 211 FKDVEVKSYTGG 222 (231)
T ss_pred CCeeEEEEcccc
Confidence 999998877643
No 13
>PRK05785 hypothetical protein; Provisional
Probab=99.89 E-value=7.2e-22 Score=175.97 Aligned_cols=198 Identities=18% Similarity=0.204 Sum_probs=138.9
Q ss_pred ChhhHHHHHHHHHHHhccchhhHHHhhcccccccccCCCCCCCcccHHHHHHHHHHHHHHHcCCCCCCCCCCCEEEEECC
Q 016921 88 SDAAARELKEGIAEFYDESSSLWEDIWGDHMHHGFYEPDSSVSVSDHRAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGC 167 (380)
Q Consensus 88 ~~~~~~~~~~~i~~~yd~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~vLDiGc 167 (380)
+...+..+|+.+++.||..+.. .+.+....|...+++.+..... ++.+||||||
T Consensus 7 ~~~~v~~~f~~iA~~YD~~n~~-------------------~s~g~~~~wr~~~~~~l~~~~~-------~~~~VLDlGc 60 (226)
T PRK05785 7 TWEELQEAYNKIPKAYDRANRF-------------------ISFNQDVRWRAELVKTILKYCG-------RPKKVLDVAA 60 (226)
T ss_pred cHHHHHHHHHhhhHHHHHhhhh-------------------ccCCCcHHHHHHHHHHHHHhcC-------CCCeEEEEcC
Confidence 3456788999999999987654 2222244565656665544322 2679999999
Q ss_pred CcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEEeccccCCCCCHHHHHH
Q 016921 168 GIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEHMPDKSKFVS 247 (380)
Q Consensus 168 GtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~~~~~~l~ 247 (380)
|||.++..+++..+.+|+|+|+|++|++.|+++ ..++++|++++|+++++||+|++.++++|++|++++++
T Consensus 61 GtG~~~~~l~~~~~~~v~gvD~S~~Ml~~a~~~---------~~~~~~d~~~lp~~d~sfD~v~~~~~l~~~~d~~~~l~ 131 (226)
T PRK05785 61 GKGELSYHFKKVFKYYVVALDYAENMLKMNLVA---------DDKVVGSFEALPFRDKSFDVVMSSFALHASDNIEKVIA 131 (226)
T ss_pred CCCHHHHHHHHhcCCEEEEECCCHHHHHHHHhc---------cceEEechhhCCCCCCCEEEEEecChhhccCCHHHHHH
Confidence 999999999987567999999999999998763 23578999999999999999999999999999999999
Q ss_pred HHHHhcCCCcEEEEEeccCCCCCCCccccchHHHHHHHHHhhcc------------CCCCCCCHHHHHHHHHhCCCcEEE
Q 016921 248 ELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAY------------YLPAWCSTADYVKLLQSLSLEDIK 315 (380)
Q Consensus 248 ~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~ll~~aGf~~v~ 315 (380)
+++|+|||. +++.++..+........+.-+....+..+.... .+..+.+++++.++++++| ..++
T Consensus 132 e~~RvLkp~--~~ile~~~p~~~~~~~~~~~y~~~~~P~~~~~~~~~~~~Y~yl~~si~~f~~~~~~~~~~~~~~-~~~~ 208 (226)
T PRK05785 132 EFTRVSRKQ--VGFIAMGKPDNVIKRKYLSFYLRYIMPYIACLAGAKCRDYKYIYYIYERLPTNSFHREIFEKYA-DIKV 208 (226)
T ss_pred HHHHHhcCc--eEEEEeCCCCcHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCHHHHHHHHHHHh-CceE
Confidence 999999993 334454433221111111112212222111111 1123678999999999974 6677
Q ss_pred EEecCCCc
Q 016921 316 AEDWSQNV 323 (380)
Q Consensus 316 ~~~~~~~~ 323 (380)
.+.++..+
T Consensus 209 ~~~~~~G~ 216 (226)
T PRK05785 209 YEERGLGL 216 (226)
T ss_pred EEEccccE
Confidence 77776554
No 14
>PRK08317 hypothetical protein; Provisional
Probab=99.89 E-value=1.2e-20 Score=170.21 Aligned_cols=226 Identities=25% Similarity=0.322 Sum_probs=153.2
Q ss_pred HHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC
Q 016921 143 EETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ 220 (380)
Q Consensus 143 ~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~--~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~ 220 (380)
+.++..+.+.+ +.+|||+|||+|.++..+++.+ ..+++|+|+++.+++.++++.. ....++.+...|+...
T Consensus 9 ~~~~~~~~~~~-----~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~--~~~~~~~~~~~d~~~~ 81 (241)
T PRK08317 9 ARTFELLAVQP-----GDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAA--GLGPNVEFVRGDADGL 81 (241)
T ss_pred HHHHHHcCCCC-----CCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhh--CCCCceEEEecccccC
Confidence 34455555544 8899999999999999999876 4799999999999999998732 2335799999999988
Q ss_pred CCCCCCccEEEeccccCCCCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHH
Q 016921 221 PFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTA 300 (380)
Q Consensus 221 ~~~~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (380)
++++++||+|++..+++|+.++..+++++.++|||||.+++.+....... ............+..+... ........
T Consensus 82 ~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 158 (241)
T PRK08317 82 PFPDGSFDAVRSDRVLQHLEDPARALAEIARVLRPGGRVVVLDTDWDTLV-WHSGDRALMRKILNFWSDH--FADPWLGR 158 (241)
T ss_pred CCCCCCceEEEEechhhccCCHHHHHHHHHHHhcCCcEEEEEecCCCcee-ecCCChHHHHHHHHHHHhc--CCCCcHHH
Confidence 88889999999999999999999999999999999999999885432211 0111111222222222221 12235677
Q ss_pred HHHHHHHhCCCcEEEEEecCCCcCCchHHHHHhhhhhhhhHHH-HhhchhhhhhhhhHHHHHHHHhcC----ceEEEEEE
Q 016921 301 DYVKLLQSLSLEDIKAEDWSQNVAPFWPAVIHSALTWKGFTSL-LRTGLKTIKGALAMPLMIEGYQKN----LIKFAIIT 375 (380)
Q Consensus 301 ~~~~ll~~aGf~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~vv~ 375 (380)
.+.++|+++||++++++.+......+........+. ...... ....+...+.......+++....+ .+..++++
T Consensus 159 ~~~~~l~~aGf~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 237 (241)
T PRK08317 159 RLPGLFREAGLTDIEVEPYTLIETDLKEADKGFGLI-RAARRAVEAGGISADEADAWLADLAQLARAGEFFFSVTGFLVV 237 (241)
T ss_pred HHHHHHHHcCCCceeEEEEEEeccCcchhhHHHHHH-HHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCEEEEEEEEEEE
Confidence 899999999999988876654443332211110000 001111 023344444555555666556666 57777999
Q ss_pred EecC
Q 016921 376 CRKP 379 (380)
Q Consensus 376 arKP 379 (380)
||||
T Consensus 238 ~~kp 241 (241)
T PRK08317 238 GRKP 241 (241)
T ss_pred EeCC
Confidence 9998
No 15
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.89 E-value=2.7e-22 Score=182.66 Aligned_cols=172 Identities=19% Similarity=0.183 Sum_probs=127.7
Q ss_pred HHHHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCC
Q 016921 139 VRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDAL 218 (380)
Q Consensus 139 ~~~~~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~ 218 (380)
.+-+..++..++ . ++.+|||+|||+|.++..+++. +.+|+|+|+|+.|++.|+++....++..++.++++|+.
T Consensus 31 ~~~~~~~l~~l~-~-----~~~~vLDiGcG~G~~a~~la~~-g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~ 103 (255)
T PRK11036 31 WQDLDRLLAELP-P-----RPLRVLDAGGGEGQTAIKLAEL-GHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQ 103 (255)
T ss_pred HHHHHHHHHhcC-C-----CCCEEEEeCCCchHHHHHHHHc-CCEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHH
Confidence 334556666654 2 3689999999999999999987 88999999999999999999988888778999999998
Q ss_pred CCC-CCCCCccEEEeccccCCCCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchHHHHHHHHHh---hccCC-
Q 016921 219 QQP-FPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKIC---DAYYL- 293 (380)
Q Consensus 219 ~~~-~~~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~- 293 (380)
+++ +.+++||+|++..+++|+.++..+++++.++|||||.+++..+..............+. ....... .....
T Consensus 104 ~l~~~~~~~fD~V~~~~vl~~~~~~~~~l~~~~~~LkpgG~l~i~~~n~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~p 182 (255)
T PRK11036 104 DIAQHLETPVDLILFHAVLEWVADPKSVLQTLWSVLRPGGALSLMFYNANGLLMHNMVAGNFD-YVQAGMPKRKKRTLSP 182 (255)
T ss_pred HHhhhcCCCCCEEEehhHHHhhCCHHHHHHHHHHHcCCCeEEEEEEECccHHHHHHHHccChH-HHHhcCccccccCCCC
Confidence 763 55789999999999999999999999999999999999988754321100000000000 0000000 00011
Q ss_pred CCCCCHHHHHHHHHhCCCcEEEEEe
Q 016921 294 PAWCSTADYVKLLQSLSLEDIKAED 318 (380)
Q Consensus 294 ~~~~~~~~~~~ll~~aGf~~v~~~~ 318 (380)
....+++++.++|+++||+++....
T Consensus 183 ~~~~~~~~l~~~l~~aGf~~~~~~g 207 (255)
T PRK11036 183 DYPLDPEQVYQWLEEAGWQIMGKTG 207 (255)
T ss_pred CCCCCHHHHHHHHHHCCCeEeeeee
Confidence 1246899999999999999986554
No 16
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.88 E-value=2.1e-21 Score=173.52 Aligned_cols=201 Identities=23% Similarity=0.354 Sum_probs=148.3
Q ss_pred EEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEEeccccCCC
Q 016921 161 NVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEHM 239 (380)
Q Consensus 161 ~vLDiGcGtG~~~~~l~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~~ 239 (380)
+|||||||+|.++..+++.+ +.+|+|+|+|+.+++.+++++...++..++.++..|+...+++ ++||+|++..+++|+
T Consensus 2 ~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~~-~~fD~I~~~~~l~~~ 80 (224)
T smart00828 2 RVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPFP-DTYDLVFGFEVIHHI 80 (224)
T ss_pred eEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCCC-CCCCEeehHHHHHhC
Confidence 69999999999999999987 6899999999999999999998888888999999999776654 589999999999999
Q ss_pred CCHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCcEEEEEec
Q 016921 240 PDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAEDW 319 (380)
Q Consensus 240 ~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v~~~~~ 319 (380)
.++..+++++.++|||||.+++.++.......... ........+.+++.++++++||++++..++
T Consensus 81 ~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~---------------~~~~~~~~s~~~~~~~l~~~Gf~~~~~~~~ 145 (224)
T smart00828 81 KDKMDLFSNISRHLKDGGHLVLADFIANLLSAIEH---------------EETTSYLVTREEWAELLARNNLRVVEGVDA 145 (224)
T ss_pred CCHHHHHHHHHHHcCCCCEEEEEEcccccCccccc---------------cccccccCCHHHHHHHHHHCCCeEEEeEEC
Confidence 99999999999999999999999864322111000 000011357899999999999999999998
Q ss_pred CCCcCCc-hHHHHHhhhhhhhhHHHHhhchhhhhhhhhHHHHHHHHhcCceEEEEEEEecCC
Q 016921 320 SQNVAPF-WPAVIHSALTWKGFTSLLRTGLKTIKGALAMPLMIEGYQKNLIKFAIITCRKPR 380 (380)
Q Consensus 320 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~arKP~ 380 (380)
..++..+ |........ ..+... .......+.-.....+.++++++.+.|++++++|+.
T Consensus 146 ~~~~~~~l~~~~f~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~ 204 (224)
T smart00828 146 SLEIANFLYDPGFEDNL--ERLYQD-DLDEVTKRHFRGIANLGKLLEKGLASYALLIVQKDE 204 (224)
T ss_pred cHhHhhhccChhHHHHH--HHhccc-cchHHHHHHHhhHHHHHHHHHhchHhhEEEEEeccc
Confidence 8876543 222221111 111110 000001222223345556789999999999999973
No 17
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.88 E-value=4.4e-21 Score=174.79 Aligned_cols=162 Identities=25% Similarity=0.333 Sum_probs=117.3
Q ss_pred HHHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCC
Q 016921 140 RMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDAL 218 (380)
Q Consensus 140 ~~~~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~ 218 (380)
+.+..++..+.... +.+|||||||+|.++..+++.. +.+|+|+|+|+.|++.|++ .++.++++|++
T Consensus 16 ~~~~~ll~~l~~~~-----~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~--------~~~~~~~~d~~ 82 (255)
T PRK14103 16 RPFYDLLARVGAER-----ARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARE--------RGVDARTGDVR 82 (255)
T ss_pred CHHHHHHHhCCCCC-----CCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHh--------cCCcEEEcChh
Confidence 35566777766544 8899999999999999999886 6799999999999999875 25889999998
Q ss_pred CCCCCCCCccEEEeccccCCCCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchHHH-HHHHHHhhcc--C-CC
Q 016921 219 QQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQ-ELLKKICDAY--Y-LP 294 (380)
Q Consensus 219 ~~~~~~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~--~-~~ 294 (380)
+++ ++++||+|++..+++|++++..++++++++|||||.+++..+.... .+.......... ..+....... . ..
T Consensus 83 ~~~-~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~~~~~~~~~-~~~~~~~~~~~~~~~w~~~~~~~~~~~~~ 160 (255)
T PRK14103 83 DWK-PKPDTDVVVSNAALQWVPEHADLLVRWVDELAPGSWIAVQVPGNFD-APSHAAVRALARREPWAKLLRDIPFRVGA 160 (255)
T ss_pred hCC-CCCCceEEEEehhhhhCCCHHHHHHHHHHhCCCCcEEEEEcCCCcC-ChhHHHHHHHhccCchhHHhcccccccCc
Confidence 874 5689999999999999999999999999999999999987543111 011000000000 0001111111 0 11
Q ss_pred CCCCHHHHHHHHHhCCCcEEEE
Q 016921 295 AWCSTADYVKLLQSLSLEDIKA 316 (380)
Q Consensus 295 ~~~~~~~~~~ll~~aGf~~v~~ 316 (380)
.+.+++++.++|+++||++...
T Consensus 161 ~~~~~~~~~~~l~~aGf~v~~~ 182 (255)
T PRK14103 161 VVQTPAGYAELLTDAGCKVDAW 182 (255)
T ss_pred CCCCHHHHHHHHHhCCCeEEEE
Confidence 3468999999999999985443
No 18
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.86 E-value=4.2e-20 Score=166.65 Aligned_cols=165 Identities=24% Similarity=0.396 Sum_probs=125.3
Q ss_pred CCEEEEECCCcChHHHHHHHHcC--CEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEEecccc
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKFG--AKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESG 236 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~--~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l 236 (380)
+.+|||+|||+|.++..+++..+ .+++|+|+++.+++.+++++...++..++.++.+|+.+.+++.++||+|++..++
T Consensus 52 ~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~I~~~~~l 131 (239)
T PRK00216 52 GDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPFPDNSFDAVTIAFGL 131 (239)
T ss_pred CCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCCCCCCccEEEEeccc
Confidence 78999999999999999998863 8999999999999999998876655567999999999887777899999999999
Q ss_pred CCCCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchHHHHHHHHHhhcc------------CCCCCCCHHHHHH
Q 016921 237 EHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAY------------YLPAWCSTADYVK 304 (380)
Q Consensus 237 ~~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~ 304 (380)
+++.++..+++++.++|+|||.+++.++..............+....+......+ ....+++.+++.+
T Consensus 132 ~~~~~~~~~l~~~~~~L~~gG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (239)
T PRK00216 132 RNVPDIDKALREMYRVLKPGGRLVILEFSKPTNPPLKKAYDFYLFKVLPLIGKLISKNAEAYSYLAESIRAFPDQEELAA 211 (239)
T ss_pred ccCCCHHHHHHHHHHhccCCcEEEEEEecCCCchHHHHHHHHHHHhhhHHHHHHHcCCcHHHHHHHHHHHhCCCHHHHHH
Confidence 9999999999999999999999999886543221100000000000000000000 0013467899999
Q ss_pred HHHhCCCcEEEEEecCCCc
Q 016921 305 LLQSLSLEDIKAEDWSQNV 323 (380)
Q Consensus 305 ll~~aGf~~v~~~~~~~~~ 323 (380)
+|+++||+++++..+..++
T Consensus 212 ~l~~aGf~~~~~~~~~~~~ 230 (239)
T PRK00216 212 MLEEAGFERVRYRNLTGGI 230 (239)
T ss_pred HHHhCCCceeeeeeeecCc
Confidence 9999999999988776554
No 19
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.86 E-value=6.8e-20 Score=166.63 Aligned_cols=155 Identities=22% Similarity=0.337 Sum_probs=120.4
Q ss_pred HHHHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCC
Q 016921 139 VRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDAL 218 (380)
Q Consensus 139 ~~~~~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~ 218 (380)
....+.+++.+... ++.+|||+|||+|.++..+++. +.+|+++|+|+.|++.++++.. .+.++++|++
T Consensus 28 ~~~a~~l~~~l~~~-----~~~~vLDiGcG~G~~~~~l~~~-~~~v~~~D~s~~~l~~a~~~~~------~~~~~~~d~~ 95 (251)
T PRK10258 28 RQSADALLAMLPQR-----KFTHVLDAGCGPGWMSRYWRER-GSQVTALDLSPPMLAQARQKDA------ADHYLAGDIE 95 (251)
T ss_pred HHHHHHHHHhcCcc-----CCCeEEEeeCCCCHHHHHHHHc-CCeEEEEECCHHHHHHHHhhCC------CCCEEEcCcc
Confidence 34455555555432 3789999999999999998875 7899999999999999987642 3578999999
Q ss_pred CCCCCCCCccEEEeccccCCCCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCC
Q 016921 219 QQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCS 298 (380)
Q Consensus 219 ~~~~~~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (380)
.+++++++||+|++..+++++.++..++.++.++|||||.+++..+..... ..+ ...+..........++.+
T Consensus 96 ~~~~~~~~fD~V~s~~~l~~~~d~~~~l~~~~~~Lk~gG~l~~~~~~~~~~-------~el-~~~~~~~~~~~~~~~~~~ 167 (251)
T PRK10258 96 SLPLATATFDLAWSNLAVQWCGNLSTALRELYRVVRPGGVVAFTTLVQGSL-------PEL-HQAWQAVDERPHANRFLP 167 (251)
T ss_pred cCcCCCCcEEEEEECchhhhcCCHHHHHHHHHHHcCCCeEEEEEeCCCCch-------HHH-HHHHHHhccCCccccCCC
Confidence 999888999999999999999999999999999999999999998754332 111 112222222233345789
Q ss_pred HHHHHHHHHhCCCcE
Q 016921 299 TADYVKLLQSLSLED 313 (380)
Q Consensus 299 ~~~~~~ll~~aGf~~ 313 (380)
.+++..+++..|++.
T Consensus 168 ~~~l~~~l~~~~~~~ 182 (251)
T PRK10258 168 PDAIEQALNGWRYQH 182 (251)
T ss_pred HHHHHHHHHhCCcee
Confidence 999999999988864
No 20
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.86 E-value=5.9e-21 Score=165.22 Aligned_cols=152 Identities=26% Similarity=0.399 Sum_probs=121.7
Q ss_pred CCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEEeccccC
Q 016921 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGE 237 (380)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~ 237 (380)
++.+|||||||.|.++..||+. |+.|+|+|+++.+++.|+.++.+.++ .+++.+..++++....++||+|+|..+++
T Consensus 59 ~g~~vLDvGCGgG~Lse~mAr~-Ga~VtgiD~se~~I~~Ak~ha~e~gv--~i~y~~~~~edl~~~~~~FDvV~cmEVlE 135 (243)
T COG2227 59 PGLRVLDVGCGGGILSEPLARL-GASVTGIDASEKPIEVAKLHALESGV--NIDYRQATVEDLASAGGQFDVVTCMEVLE 135 (243)
T ss_pred CCCeEEEecCCccHhhHHHHHC-CCeeEEecCChHHHHHHHHhhhhccc--cccchhhhHHHHHhcCCCccEEEEhhHHH
Confidence 4899999999999999999997 89999999999999999999988886 47788888888765568999999999999
Q ss_pred CCCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCC-------CCCCHHHHHHHHHhCC
Q 016921 238 HMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLP-------AWCSTADYVKLLQSLS 310 (380)
Q Consensus 238 ~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~ll~~aG 310 (380)
|++|+..+++.+.+.+||||.++++++.. ....+....+..-.-...+| .+..++++..++..+|
T Consensus 136 Hv~dp~~~~~~c~~lvkP~G~lf~STinr--------t~ka~~~~i~~ae~vl~~vP~gTH~~~k~irp~El~~~~~~~~ 207 (243)
T COG2227 136 HVPDPESFLRACAKLVKPGGILFLSTINR--------TLKAYLLAIIGAEYVLRIVPKGTHDYRKFIKPAELIRWLLGAN 207 (243)
T ss_pred ccCCHHHHHHHHHHHcCCCcEEEEecccc--------CHHHHHHHHHHHHHHHHhcCCcchhHHHhcCHHHHHHhcccCC
Confidence 99999999999999999999999998642 22222222221111111122 2567899999999999
Q ss_pred CcEEEEEecC
Q 016921 311 LEDIKAEDWS 320 (380)
Q Consensus 311 f~~v~~~~~~ 320 (380)
+..++...+.
T Consensus 208 ~~~~~~~g~~ 217 (243)
T COG2227 208 LKIIDRKGLT 217 (243)
T ss_pred ceEEeecceE
Confidence 9888765443
No 21
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.85 E-value=8.1e-20 Score=170.93 Aligned_cols=156 Identities=21% Similarity=0.237 Sum_probs=118.7
Q ss_pred CCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEEeccccCC
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEH 238 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~ 238 (380)
+.+|||||||+|.++..++......|+|+|+|+.++..++......+...++.++.+|++++++ +++||+|++..+++|
T Consensus 123 g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~-~~~FD~V~s~~vl~H 201 (322)
T PRK15068 123 GRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPA-LKAFDTVFSMGVLYH 201 (322)
T ss_pred CCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCC-cCCcCEEEECChhhc
Confidence 7899999999999999999874457999999999987665543333333579999999999987 789999999999999
Q ss_pred CCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCcEEEEEe
Q 016921 239 MPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAED 318 (380)
Q Consensus 239 ~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v~~~~ 318 (380)
+.++..++++++++|+|||.+++.++........ .+.+ ...+..+...+. ..+.+++.++|+++||+++++.+
T Consensus 202 ~~dp~~~L~~l~~~LkpGG~lvl~~~~i~~~~~~--~l~p--~~~y~~~~~~~~---lps~~~l~~~L~~aGF~~i~~~~ 274 (322)
T PRK15068 202 RRSPLDHLKQLKDQLVPGGELVLETLVIDGDENT--VLVP--GDRYAKMRNVYF---IPSVPALKNWLERAGFKDVRIVD 274 (322)
T ss_pred cCCHHHHHHHHHHhcCCCcEEEEEEEEecCCCcc--ccCc--hhHHhcCcccee---CCCHHHHHHHHHHcCCceEEEEe
Confidence 9999999999999999999999976543221110 0000 011111111122 24889999999999999999887
Q ss_pred cCCC
Q 016921 319 WSQN 322 (380)
Q Consensus 319 ~~~~ 322 (380)
....
T Consensus 275 ~~~t 278 (322)
T PRK15068 275 VSVT 278 (322)
T ss_pred CCCC
Confidence 7653
No 22
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=99.84 E-value=3e-19 Score=159.30 Aligned_cols=200 Identities=25% Similarity=0.323 Sum_probs=140.9
Q ss_pred HHHHHHHHHHhccchhhHHHhhcccccccccCCCCCCCcccHHHHHHHHHHHHHHHcCCCCCCCCCCCEEEEECCCcChH
Q 016921 93 RELKEGIAEFYDESSSLWEDIWGDHMHHGFYEPDSSVSVSDHRAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGS 172 (380)
Q Consensus 93 ~~~~~~i~~~yd~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~ 172 (380)
..+++.++++||..+..+... ....+ ...++..+... ++.+|||+|||+|.+
T Consensus 2 ~~~~~~~~~~y~~~~~~~~~~-------------------~~~~~----~~~~~~~~~~~-----~~~~vldiG~G~G~~ 53 (223)
T TIGR01934 2 QEMFDRIAPKYDLLNDLLSFG-------------------LHRLW----RRRAVKLIGVF-----KGQKVLDVACGTGDL 53 (223)
T ss_pred HhHHHHHHhhhhHHHHHHhcc-------------------cHHHH----HHHHHHHhccC-----CCCeEEEeCCCCChh
Confidence 467888999999876553210 01222 22333433332 388999999999999
Q ss_pred HHHHHHHcC--CEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEEeccccCCCCCHHHHHHHHH
Q 016921 173 SRYLAKKFG--AKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEHMPDKSKFVSELA 250 (380)
Q Consensus 173 ~~~l~~~~~--~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~~~~~~l~~~~ 250 (380)
+..+++..+ .+++++|+++.+++.++++.. ...++.+..+|+.+.+++.++||+|++..+++|..++..+++++.
T Consensus 54 ~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~---~~~~i~~~~~d~~~~~~~~~~~D~i~~~~~~~~~~~~~~~l~~~~ 130 (223)
T TIGR01934 54 AIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE---LPLNIEFIQADAEALPFEDNSFDAVTIAFGLRNVTDIQKALREMY 130 (223)
T ss_pred HHHHHHhcCCCceEEEEECCHHHHHHHHHHhc---cCCCceEEecchhcCCCCCCcEEEEEEeeeeCCcccHHHHHHHHH
Confidence 999998874 599999999999999988775 335789999999998877789999999999999999999999999
Q ss_pred HhcCCCcEEEEEeccCCCCCCCccccchHHHHHHHHHhhcc------------CCCCCCCHHHHHHHHHhCCCcEEEEEe
Q 016921 251 RVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAY------------YLPAWCSTADYVKLLQSLSLEDIKAED 318 (380)
Q Consensus 251 r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~ll~~aGf~~v~~~~ 318 (380)
+.|+|||.+++.++......+.......+....+......+ ....+.+.+++..+|+++||+++.++.
T Consensus 131 ~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~ 210 (223)
T TIGR01934 131 RVLKPGGRLVILEFSKPANALLKKFYKFYLKNVLPSIGGLISKNAEAYTYLPESIRAFPSQEELAAMLKEAGFEEVRYRS 210 (223)
T ss_pred HHcCCCcEEEEEEecCCCchhhHHHHHHHHHHhhhhhhhhhcCCchhhHHHHHHHHhCCCHHHHHHHHHHcCCccceeee
Confidence 99999999999886433221110000001101110000000 001246889999999999999998887
Q ss_pred cCCCc
Q 016921 319 WSQNV 323 (380)
Q Consensus 319 ~~~~~ 323 (380)
+...+
T Consensus 211 ~~~~~ 215 (223)
T TIGR01934 211 LTFGV 215 (223)
T ss_pred eecce
Confidence 76553
No 23
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.84 E-value=1e-19 Score=169.66 Aligned_cols=146 Identities=24% Similarity=0.325 Sum_probs=118.2
Q ss_pred CCCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEEecccc
Q 016921 158 RPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESG 236 (380)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l 236 (380)
++.+|||||||+|.++..+++.. +.+|+++|+|+.|++.|+++... .+++++.+|++++++++++||+|++..++
T Consensus 113 ~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~----~~i~~i~gD~e~lp~~~~sFDvVIs~~~L 188 (340)
T PLN02490 113 RNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL----KECKIIEGDAEDLPFPTDYADRYVSAGSI 188 (340)
T ss_pred CCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhc----cCCeEEeccHHhCCCCCCceeEEEEcChh
Confidence 47899999999999999998876 57999999999999999987542 46889999999999888999999999999
Q ss_pred CCCCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCcEEEE
Q 016921 237 EHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKA 316 (380)
Q Consensus 237 ~~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v~~ 316 (380)
+|++++..++++++++|||||.+++.+..... .+...... ..+. .+.+.+++.++|+++||+.+++
T Consensus 189 ~~~~d~~~~L~e~~rvLkPGG~LvIi~~~~p~---------~~~~r~~~---~~~~--~~~t~eEl~~lL~~aGF~~V~i 254 (340)
T PLN02490 189 EYWPDPQRGIKEAYRVLKIGGKACLIGPVHPT---------FWLSRFFA---DVWM--LFPKEEEYIEWFTKAGFKDVKL 254 (340)
T ss_pred hhCCCHHHHHHHHHHhcCCCcEEEEEEecCcc---------hhHHHHhh---hhhc--cCCCHHHHHHHHHHCCCeEEEE
Confidence 99999999999999999999999887643211 11111111 1111 1357899999999999999998
Q ss_pred EecCC
Q 016921 317 EDWSQ 321 (380)
Q Consensus 317 ~~~~~ 321 (380)
+++..
T Consensus 255 ~~i~~ 259 (340)
T PLN02490 255 KRIGP 259 (340)
T ss_pred EEcCh
Confidence 87654
No 24
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.83 E-value=1.1e-18 Score=160.56 Aligned_cols=154 Identities=24% Similarity=0.333 Sum_probs=122.1
Q ss_pred CCCCEEEEECCCcChHHHHHHHHcC--CEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEEecc
Q 016921 157 KRPKNVVDVGCGIGGSSRYLAKKFG--AKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSME 234 (380)
Q Consensus 157 ~~~~~vLDiGcGtG~~~~~l~~~~~--~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~ 234 (380)
.++.+|||||||+|..+..+++..+ .+|+|+|+++.|++.|+++....+. .++.++.+|++++++++++||+|++..
T Consensus 76 ~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~-~~v~~~~~d~~~l~~~~~~fD~Vi~~~ 154 (272)
T PRK11873 76 KPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGY-TNVEFRLGEIEALPVADNSVDVIISNC 154 (272)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCC-CCEEEEEcchhhCCCCCCceeEEEEcC
Confidence 3589999999999999888777653 5799999999999999999887776 489999999999988888999999999
Q ss_pred ccCCCCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCcEE
Q 016921 235 SGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDI 314 (380)
Q Consensus 235 ~l~~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v 314 (380)
+++|.++...++++++++|||||++++.++..... +......... +... ......+.+++.++|+++||.++
T Consensus 155 v~~~~~d~~~~l~~~~r~LkpGG~l~i~~~~~~~~------~~~~~~~~~~-~~~~-~~~~~~~~~e~~~~l~~aGf~~v 226 (272)
T PRK11873 155 VINLSPDKERVFKEAFRVLKPGGRFAISDVVLRGE------LPEEIRNDAE-LYAG-CVAGALQEEEYLAMLAEAGFVDI 226 (272)
T ss_pred cccCCCCHHHHHHHHHHHcCCCcEEEEEEeeccCC------CCHHHHHhHH-HHhc-cccCCCCHHHHHHHHHHCCCCce
Confidence 99999999999999999999999999988654321 1111111111 1111 11224578999999999999998
Q ss_pred EEEec
Q 016921 315 KAEDW 319 (380)
Q Consensus 315 ~~~~~ 319 (380)
++...
T Consensus 227 ~i~~~ 231 (272)
T PRK11873 227 TIQPK 231 (272)
T ss_pred EEEec
Confidence 77543
No 25
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.83 E-value=4.4e-19 Score=164.17 Aligned_cols=168 Identities=17% Similarity=0.162 Sum_probs=121.7
Q ss_pred HHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC
Q 016921 142 IEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP 221 (380)
Q Consensus 142 ~~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~ 221 (380)
...++..++... +.+|||||||+|.++..++......|+|+|+|+.|+..++......+...++.+..+++++++
T Consensus 110 ~~~~l~~l~~~~-----g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp 184 (314)
T TIGR00452 110 WDRVLPHLSPLK-----GRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLH 184 (314)
T ss_pred HHHHHHhcCCCC-----CCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCC
Confidence 345566554433 889999999999999998876434799999999998775443322222357888999998887
Q ss_pred CCCCCccEEEeccccCCCCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHHH
Q 016921 222 FPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTAD 301 (380)
Q Consensus 222 ~~~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (380)
.. ++||+|++.++++|++++..++++++++|||||.|++.++...... ...+.+. ..+..+...+. .++.++
T Consensus 185 ~~-~~FD~V~s~gvL~H~~dp~~~L~el~r~LkpGG~Lvletl~i~g~~--~~~l~p~--~ry~k~~nv~f---lpS~~~ 256 (314)
T TIGR00452 185 EL-YAFDTVFSMGVLYHRKSPLEHLKQLKHQLVIKGELVLETLVIDGDL--NTVLVPK--DRYAKMKNVYF---IPSVSA 256 (314)
T ss_pred CC-CCcCEEEEcchhhccCCHHHHHHHHHHhcCCCCEEEEEEEEecCcc--ccccCch--HHHHhcccccc---CCCHHH
Confidence 53 5899999999999999999999999999999999999875432211 0111010 11222222222 358899
Q ss_pred HHHHHHhCCCcEEEEEecCCC
Q 016921 302 YVKLLQSLSLEDIKAEDWSQN 322 (380)
Q Consensus 302 ~~~ll~~aGf~~v~~~~~~~~ 322 (380)
+..+|+++||+++++.+....
T Consensus 257 L~~~L~~aGF~~V~i~~~~~t 277 (314)
T TIGR00452 257 LKNWLEKVGFENFRILDVLKT 277 (314)
T ss_pred HHHHHHHCCCeEEEEEeccCC
Confidence 999999999999998765543
No 26
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.82 E-value=1.5e-18 Score=158.47 Aligned_cols=161 Identities=22% Similarity=0.330 Sum_probs=115.3
Q ss_pred HHHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCC
Q 016921 140 RMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDAL 218 (380)
Q Consensus 140 ~~~~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~ 218 (380)
.....++..+.+.. +.+|||||||+|.++..+++.. +.+|+|+|+|+.|++.++++. +++.++.+|+.
T Consensus 18 ~~~~~ll~~~~~~~-----~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~------~~~~~~~~d~~ 86 (258)
T PRK01683 18 RPARDLLARVPLEN-----PRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRL------PDCQFVEADIA 86 (258)
T ss_pred cHHHHHHhhCCCcC-----CCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhC------CCCeEEECchh
Confidence 35556666665544 8899999999999999999886 689999999999999998764 46899999998
Q ss_pred CCCCCCCCccEEEeccccCCCCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchHH--HHHHHHHhhcc-CCCC
Q 016921 219 QQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWE--QELLKKICDAY-YLPA 295 (380)
Q Consensus 219 ~~~~~~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~-~~~~ 295 (380)
.+. ++++||+|++..+++|+++...++++++++|||||.+++....... .+....+.... ..+........ ....
T Consensus 87 ~~~-~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~~~~~~~~~~~-~~~~~~~~~~~~~~~w~~~~~~~~~~~~~ 164 (258)
T PRK01683 87 SWQ-PPQALDLIFANASLQWLPDHLELFPRLVSLLAPGGVLAVQMPDNLD-EPSHVLMREVAENGPWEQNLPDRGARRAP 164 (258)
T ss_pred ccC-CCCCccEEEEccChhhCCCHHHHHHHHHHhcCCCcEEEEECCCCCC-CHHHHHHHHHHccCchHHHhccccccCcC
Confidence 764 4579999999999999999999999999999999999886422110 01100000000 00001111111 0112
Q ss_pred CCCHHHHHHHHHhCCCcE
Q 016921 296 WCSTADYVKLLQSLSLED 313 (380)
Q Consensus 296 ~~~~~~~~~ll~~aGf~~ 313 (380)
+.+.+++.++|.++|+.+
T Consensus 165 ~~~~~~~~~~l~~~g~~v 182 (258)
T PRK01683 165 LPPPHAYYDALAPAACRV 182 (258)
T ss_pred CCCHHHHHHHHHhCCCce
Confidence 457889999999999874
No 27
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.82 E-value=6.7e-19 Score=159.41 Aligned_cols=152 Identities=14% Similarity=0.166 Sum_probs=114.6
Q ss_pred CCCEEEEECCCcChHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEEecc
Q 016921 158 RPKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSME 234 (380)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~---~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~ 234 (380)
++.+|||||||+|..+..+++.. +.+|+|+|+|+.|++.|++++...+...+++++++|+.+++++ .+|+|++..
T Consensus 56 ~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~~--~~D~vv~~~ 133 (247)
T PRK15451 56 PGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIE--NASMVVLNF 133 (247)
T ss_pred CCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCCC--CCCEEehhh
Confidence 37899999999999999888742 6899999999999999999998877777899999999988754 599999999
Q ss_pred ccCCCCC--HHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchHHHHHHHHHhh--cc-------------CCCCCC
Q 016921 235 SGEHMPD--KSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICD--AY-------------YLPAWC 297 (380)
Q Consensus 235 ~l~~~~~--~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-------------~~~~~~ 297 (380)
+++|+++ ...++++++++|||||.|++.+........ .............. .+ ......
T Consensus 134 ~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e~~~~~~~~----~~~~~~~~~~~~~~~~g~s~~ei~~~~~~~~~~~~~~ 209 (247)
T PRK15451 134 TLQFLEPSERQALLDKIYQGLNPGGALVLSEKFSFEDAK----VGELLFNMHHDFKRANGYSELEISQKRSMLENVMLTD 209 (247)
T ss_pred HHHhCCHHHHHHHHHHHHHhcCCCCEEEEEEecCCCcch----hHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhhcccC
Confidence 9999964 468999999999999999999854322211 11111111111100 00 111136
Q ss_pred CHHHHHHHHHhCCCcEEE
Q 016921 298 STADYVKLLQSLSLEDIK 315 (380)
Q Consensus 298 ~~~~~~~ll~~aGf~~v~ 315 (380)
+.++..++|+++||..++
T Consensus 210 ~~~~~~~~L~~aGF~~v~ 227 (247)
T PRK15451 210 SVETHKARLHKAGFEHSE 227 (247)
T ss_pred CHHHHHHHHHHcCchhHH
Confidence 889999999999998653
No 28
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=99.81 E-value=2.2e-19 Score=156.27 Aligned_cols=152 Identities=23% Similarity=0.302 Sum_probs=116.1
Q ss_pred CCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCC-----CeEEEEcCCCCCCCCCCCccEEEec
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLAD-----KVSFQVGDALQQPFPDGQFDLVWSM 233 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~-----~v~~~~~d~~~~~~~~~~fD~V~~~ 233 (380)
+.+|||+|||+|.++..||+. |++|+|||+++.|++.|+++........ ++++.+.|++... +.||+|+|.
T Consensus 90 g~~ilDvGCGgGLLSepLArl-ga~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~---~~fDaVvcs 165 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARL-GAQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLT---GKFDAVVCS 165 (282)
T ss_pred CceEEEeccCccccchhhHhh-CCeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcc---cccceeeeH
Confidence 578999999999999999996 9999999999999999999954433222 3677888887763 559999999
Q ss_pred cccCCCCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchHHHHHHHHHhhcc--CCCCCCCHHHHHHHHHhCCC
Q 016921 234 ESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAY--YLPAWCSTADYVKLLQSLSL 311 (380)
Q Consensus 234 ~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ll~~aGf 311 (380)
.+++|+.|++.+++.+.+.|||||.+++++.......-.... +..+.+..+.... ....+.+++++..+++.+|+
T Consensus 166 evleHV~dp~~~l~~l~~~lkP~G~lfittinrt~lS~~~~i---~~~E~vl~ivp~Gth~~ekfi~p~e~~~~l~~~~~ 242 (282)
T KOG1270|consen 166 EVLEHVKDPQEFLNCLSALLKPNGRLFITTINRTILSFAGTI---FLAEIVLRIVPKGTHTWEKFINPEELTSILNANGA 242 (282)
T ss_pred HHHHHHhCHHHHHHHHHHHhCCCCceEeeehhhhHHHhhccc---cHHHHHHHhcCCCCcCHHHcCCHHHHHHHHHhcCc
Confidence 999999999999999999999999999998654332211111 1112222222221 12247899999999999999
Q ss_pred cEEEEE
Q 016921 312 EDIKAE 317 (380)
Q Consensus 312 ~~v~~~ 317 (380)
.+..+.
T Consensus 243 ~v~~v~ 248 (282)
T KOG1270|consen 243 QVNDVV 248 (282)
T ss_pred chhhhh
Confidence 876654
No 29
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=99.80 E-value=1.4e-19 Score=152.89 Aligned_cols=136 Identities=33% Similarity=0.528 Sum_probs=105.3
Q ss_pred CCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEEeccccC
Q 016921 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGE 237 (380)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~ 237 (380)
++.+|||||||+|.++..+++. +.+++|+|+++.+++. .++.....+....+.++++||+|++..+++
T Consensus 22 ~~~~vLDiGcG~G~~~~~l~~~-~~~~~g~D~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~ 89 (161)
T PF13489_consen 22 PGKRVLDIGCGTGSFLRALAKR-GFEVTGVDISPQMIEK-----------RNVVFDNFDAQDPPFPDGSFDLIICNDVLE 89 (161)
T ss_dssp TTSEEEEESSTTSHHHHHHHHT-TSEEEEEESSHHHHHH-----------TTSEEEEEECHTHHCHSSSEEEEEEESSGG
T ss_pred CCCEEEEEcCCCCHHHHHHHHh-CCEEEEEECCHHHHhh-----------hhhhhhhhhhhhhhccccchhhHhhHHHHh
Confidence 4889999999999999999776 7899999999999887 234455554445455679999999999999
Q ss_pred CCCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchHHHHHHHHH---hhccCCCCCCCHHHHHHHHHhCCCcEE
Q 016921 238 HMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKI---CDAYYLPAWCSTADYVKLLQSLSLEDI 314 (380)
Q Consensus 238 ~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~ll~~aGf~~v 314 (380)
|++|+..+++++.++|||||++++.++.... ... .....+ ........+++.+++..+++++||+++
T Consensus 90 ~~~d~~~~l~~l~~~LkpgG~l~~~~~~~~~---------~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~G~~iv 159 (161)
T PF13489_consen 90 HLPDPEEFLKELSRLLKPGGYLVISDPNRDD---------PSP-RSFLKWRYDRPYGGHVHFFSPDELRQLLEQAGFEIV 159 (161)
T ss_dssp GSSHHHHHHHHHHHCEEEEEEEEEEEEBTTS---------HHH-HHHHHCCGTCHHTTTTEEBBHHHHHHHHHHTTEEEE
T ss_pred hcccHHHHHHHHHHhcCCCCEEEEEEcCCcc---------hhh-hHHHhcCCcCccCceeccCCHHHHHHHHHHCCCEEE
Confidence 9999999999999999999999999865321 011 111111 000022246899999999999999998
Q ss_pred E
Q 016921 315 K 315 (380)
Q Consensus 315 ~ 315 (380)
+
T Consensus 160 ~ 160 (161)
T PF13489_consen 160 E 160 (161)
T ss_dssp E
T ss_pred E
Confidence 6
No 30
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.80 E-value=2.3e-18 Score=155.39 Aligned_cols=152 Identities=16% Similarity=0.186 Sum_probs=115.4
Q ss_pred CCCEEEEECCCcChHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEEecc
Q 016921 158 RPKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSME 234 (380)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~---~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~ 234 (380)
++.+|||||||+|.++..+++.+ +++++|+|+|+.|++.|++++...+...++.++++|+.+++++ .+|+|++..
T Consensus 53 ~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~~--~~d~v~~~~ 130 (239)
T TIGR00740 53 PDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIK--NASMVILNF 130 (239)
T ss_pred CCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCC--CCCEEeeec
Confidence 37899999999999999998863 6799999999999999999987766556799999999988754 589999999
Q ss_pred ccCCCC--CHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchHHHHHHHHHhh--cc-------------CCCCCC
Q 016921 235 SGEHMP--DKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICD--AY-------------YLPAWC 297 (380)
Q Consensus 235 ~l~~~~--~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-------------~~~~~~ 297 (380)
+++|++ ++..++++++++|||||.+++.+........ ...........+.. .+ ......
T Consensus 131 ~l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~~~~~~~~----~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 206 (239)
T TIGR00740 131 TLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFRFEDTK----INHLLIDLHHQFKRANGYSELEISQKRTALENVMRTD 206 (239)
T ss_pred chhhCCHHHHHHHHHHHHHhcCCCeEEEEeecccCCCHh----HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhccCCCC
Confidence 999996 4578999999999999999999864322211 11111111111110 00 112247
Q ss_pred CHHHHHHHHHhCCCcEEE
Q 016921 298 STADYVKLLQSLSLEDIK 315 (380)
Q Consensus 298 ~~~~~~~ll~~aGf~~v~ 315 (380)
+.+++.++|+++||..++
T Consensus 207 s~~~~~~~l~~aGF~~~~ 224 (239)
T TIGR00740 207 SIETHKARLKNVGFSHVE 224 (239)
T ss_pred CHHHHHHHHHHcCCchHH
Confidence 899999999999998653
No 31
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.80 E-value=4.5e-19 Score=148.69 Aligned_cols=106 Identities=32% Similarity=0.513 Sum_probs=97.0
Q ss_pred CCCEEEEECCCcChHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC--CCCCCccEEEec
Q 016921 158 RPKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP--FPDGQFDLVWSM 233 (380)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~--~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--~~~~~fD~V~~~ 233 (380)
++.+|||+|||+|.++..+++.. +.+++|+|+|+.|++.|+++++..+.+ +++|+++|+.+++ ++ +.||+|++.
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~-ni~~~~~d~~~l~~~~~-~~~D~I~~~ 80 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLD-NIEFIQGDIEDLPQELE-EKFDIIISN 80 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTST-TEEEEESBTTCGCGCSS-TTEEEEEEE
T ss_pred CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhccccccccc-ccceEEeehhccccccC-CCeeEEEEc
Confidence 48899999999999999999654 689999999999999999999988886 8999999999976 55 899999999
Q ss_pred cccCCCCCHHHHHHHHHHhcCCCcEEEEEecc
Q 016921 234 ESGEHMPDKSKFVSELARVTAPAGTIIIVTWC 265 (380)
Q Consensus 234 ~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~~~ 265 (380)
.+++|+.++..+++++.++|++||.+++.++.
T Consensus 81 ~~l~~~~~~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 81 GVLHHFPDPEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp STGGGTSHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred CchhhccCHHHHHHHHHHHcCCCcEEEEEECC
Confidence 99999999999999999999999999999865
No 32
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.79 E-value=1.2e-17 Score=150.57 Aligned_cols=141 Identities=30% Similarity=0.423 Sum_probs=113.9
Q ss_pred CCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEEeccccC
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGE 237 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~ 237 (380)
+.+|||||||+|.++..+++.. ..+++|+|+++.++..++++.. +++.++.+|+.+.++++++||+|++..+++
T Consensus 35 ~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~-----~~~~~~~~d~~~~~~~~~~fD~vi~~~~l~ 109 (240)
T TIGR02072 35 PASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLS-----ENVQFICGDAEKLPLEDSSFDLIVSNLALQ 109 (240)
T ss_pred CCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcC-----CCCeEEecchhhCCCCCCceeEEEEhhhhh
Confidence 5789999999999999999886 5679999999999998887653 378999999999888889999999999999
Q ss_pred CCCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCcEEEEE
Q 016921 238 HMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAE 317 (380)
Q Consensus 238 ~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v~~~ 317 (380)
|+.++..++.++.++|+|||.+++.++..... ..+. ..... ....+.+.+++.++++++ |..+.+.
T Consensus 110 ~~~~~~~~l~~~~~~L~~~G~l~~~~~~~~~~-------~~~~-~~~~~-----~~~~~~~~~~~~~~l~~~-f~~~~~~ 175 (240)
T TIGR02072 110 WCDDLSQALSELARVLKPGGLLAFSTFGPGTL-------HELR-QSFGQ-----HGLRYLSLDELKALLKNS-FELLTLE 175 (240)
T ss_pred hccCHHHHHHHHHHHcCCCcEEEEEeCCccCH-------HHHH-HHHHH-----hccCCCCHHHHHHHHHHh-cCCcEEE
Confidence 99999999999999999999999987643321 1111 11111 112357889999999998 9877654
Q ss_pred e
Q 016921 318 D 318 (380)
Q Consensus 318 ~ 318 (380)
.
T Consensus 176 ~ 176 (240)
T TIGR02072 176 E 176 (240)
T ss_pred E
Confidence 3
No 33
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=99.79 E-value=7.4e-19 Score=147.15 Aligned_cols=155 Identities=22% Similarity=0.347 Sum_probs=118.7
Q ss_pred CCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeE-EEEcCCCCCC-CCCCCccEEEecccc
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVS-FQVGDALQQP-FPDGQFDLVWSMESG 236 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~-~~~~d~~~~~-~~~~~fD~V~~~~~l 236 (380)
...|||||||||..-...-..-+++|+++|+++.|-+.+.+.++++. +.++. |++++.+++| ++++++|.|++..+|
T Consensus 77 K~~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks~~E~k-~~~~~~fvva~ge~l~~l~d~s~DtVV~TlvL 155 (252)
T KOG4300|consen 77 KGDVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKSAAEKK-PLQVERFVVADGENLPQLADGSYDTVVCTLVL 155 (252)
T ss_pred ccceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHHHHhhcc-CcceEEEEeechhcCcccccCCeeeEEEEEEE
Confidence 55689999999998877764447899999999999999999998874 45676 9999999997 889999999999999
Q ss_pred CCCCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchHHHHHHHHHhhc-cCCC--CCCCHHHHHHHHHhCCCcE
Q 016921 237 EHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDA-YYLP--AWCSTADYVKLLQSLSLED 313 (380)
Q Consensus 237 ~~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~ll~~aGf~~ 313 (380)
+...|+.+.|+++.|+|+|||++++.+....... .|. .++...... +... ...-..+..+.|+++-|+.
T Consensus 156 CSve~~~k~L~e~~rlLRpgG~iifiEHva~~y~-------~~n-~i~q~v~ep~~~~~~dGC~ltrd~~e~Leda~f~~ 227 (252)
T KOG4300|consen 156 CSVEDPVKQLNEVRRLLRPGGRIIFIEHVAGEYG-------FWN-RILQQVAEPLWHLESDGCVLTRDTGELLEDAEFSI 227 (252)
T ss_pred eccCCHHHHHHHHHHhcCCCcEEEEEecccccch-------HHH-HHHHHHhchhhheeccceEEehhHHHHhhhccccc
Confidence 9999999999999999999999999996544322 221 122221111 1111 0112345668899999999
Q ss_pred EEEEecCCC
Q 016921 314 IKAEDWSQN 322 (380)
Q Consensus 314 v~~~~~~~~ 322 (380)
++.+.....
T Consensus 228 ~~~kr~~~~ 236 (252)
T KOG4300|consen 228 DSCKRFNFG 236 (252)
T ss_pred chhhcccCC
Confidence 887766543
No 34
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.79 E-value=6.8e-18 Score=147.50 Aligned_cols=137 Identities=23% Similarity=0.363 Sum_probs=109.6
Q ss_pred CCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEEeccccCC
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEH 238 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~ 238 (380)
+.+|||+|||+|.++..++++ +.+|+|+|+|+.+++.++++....++ .++.+.+.|+.+.+++ ++||+|++..+++|
T Consensus 31 ~~~vLDiGcG~G~~a~~La~~-g~~V~gvD~S~~~i~~a~~~~~~~~~-~~v~~~~~d~~~~~~~-~~fD~I~~~~~~~~ 107 (197)
T PRK11207 31 PGKTLDLGCGNGRNSLYLAAN-GFDVTAWDKNPMSIANLERIKAAENL-DNLHTAVVDLNNLTFD-GEYDFILSTVVLMF 107 (197)
T ss_pred CCcEEEECCCCCHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHHHHcCC-CcceEEecChhhCCcC-CCcCEEEEecchhh
Confidence 789999999999999999987 88999999999999999999888777 4689999999887764 67999999999988
Q ss_pred CC--CHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCcEEEE
Q 016921 239 MP--DKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKA 316 (380)
Q Consensus 239 ~~--~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v~~ 316 (380)
++ +...+++++.++|||||.+++.........+.. ...+..++.+++.++++ ||+++..
T Consensus 108 ~~~~~~~~~l~~i~~~LkpgG~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~el~~~~~--~~~~~~~ 168 (197)
T PRK11207 108 LEAKTIPGLIANMQRCTKPGGYNLIVAAMDTADYPCT-----------------VGFPFAFKEGELRRYYE--GWEMVKY 168 (197)
T ss_pred CCHHHHHHHHHHHHHHcCCCcEEEEEEEecCCCCCCC-----------------CCCCCccCHHHHHHHhC--CCeEEEe
Confidence 85 468999999999999999766543222111100 01123467899999997 9998876
Q ss_pred E
Q 016921 317 E 317 (380)
Q Consensus 317 ~ 317 (380)
.
T Consensus 169 ~ 169 (197)
T PRK11207 169 N 169 (197)
T ss_pred e
Confidence 4
No 35
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.79 E-value=5.2e-19 Score=135.57 Aligned_cols=95 Identities=38% Similarity=0.623 Sum_probs=84.3
Q ss_pred EEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEEeccccCCCCCH
Q 016921 163 VDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEHMPDK 242 (380)
Q Consensus 163 LDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~~~ 242 (380)
||+|||+|..+..+++..+.+|+|+|+++.+++.++++... .++.+.++|++++|+++++||+|++..+++|++++
T Consensus 1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~~~~~~~~----~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~~~~ 76 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGASVTGIDISEEMLEQARKRLKN----EGVSFRQGDAEDLPFPDNSFDVVFSNSVLHHLEDP 76 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTCEEEEEES-HHHHHHHHHHTTT----STEEEEESBTTSSSS-TT-EEEEEEESHGGGSSHH
T ss_pred CEecCcCCHHHHHHHhccCCEEEEEeCCHHHHHHHHhcccc----cCchheeehHHhCccccccccccccccceeeccCH
Confidence 89999999999999987578999999999999999997754 34679999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCcEEEE
Q 016921 243 SKFVSELARVTAPAGTIII 261 (380)
Q Consensus 243 ~~~l~~~~r~LkpgG~l~~ 261 (380)
.++++++.|+|||||++++
T Consensus 77 ~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 77 EAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp HHHHHHHHHHEEEEEEEEE
T ss_pred HHHHHHHHHHcCcCeEEeC
Confidence 9999999999999999986
No 36
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=99.77 E-value=3.1e-17 Score=153.39 Aligned_cols=163 Identities=20% Similarity=0.267 Sum_probs=121.5
Q ss_pred HHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC
Q 016921 143 EETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP 221 (380)
Q Consensus 143 ~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~ 221 (380)
..+++...+. ++.+|||||||+|.++..+++++ +.+++++|. +.+++.+++++.+.++.++++++.+|+.+.+
T Consensus 139 ~~l~~~~~~~-----~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~ 212 (306)
T TIGR02716 139 QLLLEEAKLD-----GVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKES 212 (306)
T ss_pred HHHHHHcCCC-----CCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhCCccceEEEEecCccCCC
Confidence 3444554443 37899999999999999999987 689999998 7899999999998888889999999998766
Q ss_pred CCCCCccEEEeccccCCCCCH--HHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCH
Q 016921 222 FPDGQFDLVWSMESGEHMPDK--SKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCST 299 (380)
Q Consensus 222 ~~~~~fD~V~~~~~l~~~~~~--~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (380)
++ .+|+|++..++|++.+. ..++++++++|+|||++++.|+...... ...+.. ....+...........+.+.
T Consensus 213 ~~--~~D~v~~~~~lh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~ 287 (306)
T TIGR02716 213 YP--EADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDMVIDDPE--NPNFDY-LSHYILGAGMPFSVLGFKEQ 287 (306)
T ss_pred CC--CCCEEEeEhhhhcCChHHHHHHHHHHHHhcCCCCEEEEEEeccCCCC--CchhhH-HHHHHHHcccccccccCCCH
Confidence 54 36999999999888653 5799999999999999999997543321 111111 11111111111112234568
Q ss_pred HHHHHHHHhCCCcEEEE
Q 016921 300 ADYVKLLQSLSLEDIKA 316 (380)
Q Consensus 300 ~~~~~ll~~aGf~~v~~ 316 (380)
+++.++|+++||+.+++
T Consensus 288 ~e~~~ll~~aGf~~v~~ 304 (306)
T TIGR02716 288 ARYKEILESLGYKDVTM 304 (306)
T ss_pred HHHHHHHHHcCCCeeEe
Confidence 99999999999998864
No 37
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.77 E-value=2.7e-18 Score=136.17 Aligned_cols=105 Identities=33% Similarity=0.582 Sum_probs=90.7
Q ss_pred CCCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCC-CCCCCCCCCccEEEecc-
Q 016921 158 RPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDA-LQQPFPDGQFDLVWSME- 234 (380)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~-~~~~~~~~~fD~V~~~~- 234 (380)
|+.+|||||||+|.++..+++.. +++|+|+|+|+.+++.|++++...+..+++.++++|+ ..... .+.||+|++..
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~-~~~~D~v~~~~~ 79 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDF-LEPFDLVICSGF 79 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTT-SSCEEEEEECSG
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCccc-CCCCCEEEECCC
Confidence 47899999999999999999954 8999999999999999999997777888999999999 33332 46799999998
Q ss_pred ccCCC---CCHHHHHHHHHHhcCCCcEEEEEe
Q 016921 235 SGEHM---PDKSKFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 235 ~l~~~---~~~~~~l~~~~r~LkpgG~l~~~~ 263 (380)
+++++ .+..++++++.+.|+|||++++.+
T Consensus 80 ~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 80 TLHFLLPLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp SGGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 55544 356889999999999999999975
No 38
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=99.76 E-value=6.4e-17 Score=144.03 Aligned_cols=167 Identities=25% Similarity=0.278 Sum_probs=120.1
Q ss_pred HHHHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCC
Q 016921 139 VRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDAL 218 (380)
Q Consensus 139 ~~~~~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~ 218 (380)
..+...++..+... ..++.+|||||||+|.++..+++. +.+|+|+|+|+.|++.|+++....+...++.|.++|+.
T Consensus 39 ~~~~~~~~~~l~~~---~~~~~~vLDiGcG~G~~~~~la~~-~~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~ 114 (219)
T TIGR02021 39 AAMRRKLLDWLPKD---PLKGKRVLDAGCGTGLLSIELAKR-GAIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLL 114 (219)
T ss_pred HHHHHHHHHHHhcC---CCCCCEEEEEeCCCCHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChh
Confidence 34445555555410 124789999999999999999886 78999999999999999999987766568999999998
Q ss_pred CCCCCCCCccEEEeccccCCCCC--HHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCC-C-
Q 016921 219 QQPFPDGQFDLVWSMESGEHMPD--KSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYL-P- 294 (380)
Q Consensus 219 ~~~~~~~~fD~V~~~~~l~~~~~--~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~- 294 (380)
+++ ++||+|++..+++|++. ...+++++.+++++++.+.+... . ... .....+......... +
T Consensus 115 ~~~---~~fD~ii~~~~l~~~~~~~~~~~l~~i~~~~~~~~~i~~~~~---~------~~~-~~~~~~~~~~~~~~~~~~ 181 (219)
T TIGR02021 115 SLC---GEFDIVVCMDVLIHYPASDMAKALGHLASLTKERVIFTFAPK---T------AWL-AFLKMIGELFPGSSRATS 181 (219)
T ss_pred hCC---CCcCEEEEhhHHHhCCHHHHHHHHHHHHHHhCCCEEEEECCC---c------hHH-HHHHHHHhhCcCcccccc
Confidence 865 78999999999998853 57889999999987665554321 0 000 111112221111110 1
Q ss_pred -CCCCHHHHHHHHHhCCCcEEEEEecCCC
Q 016921 295 -AWCSTADYVKLLQSLSLEDIKAEDWSQN 322 (380)
Q Consensus 295 -~~~~~~~~~~ll~~aGf~~v~~~~~~~~ 322 (380)
.+++++++.++++++||+++..+.....
T Consensus 182 ~~~~~~~~~~~~l~~~Gf~v~~~~~~~~~ 210 (219)
T TIGR02021 182 AYLHPMTDLERALGELGWKIVREGLVSTG 210 (219)
T ss_pred eEEecHHHHHHHHHHcCceeeeeeccccc
Confidence 2468999999999999999988765544
No 39
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.76 E-value=3.7e-17 Score=142.59 Aligned_cols=138 Identities=17% Similarity=0.254 Sum_probs=108.4
Q ss_pred CCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEEeccccCC
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEH 238 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~ 238 (380)
+.+|||+|||+|.++..++++ +.+|+|+|+|+.+++.+++++...++. +.+...|+...+++ ++||+|++..+++|
T Consensus 31 ~~~vLDiGcG~G~~a~~la~~-g~~V~~iD~s~~~l~~a~~~~~~~~~~--v~~~~~d~~~~~~~-~~fD~I~~~~~~~~ 106 (195)
T TIGR00477 31 PCKTLDLGCGQGRNSLYLSLA-GYDVRAWDHNPASIASVLDMKARENLP--LRTDAYDINAAALN-EDYDFIFSTVVFMF 106 (195)
T ss_pred CCcEEEeCCCCCHHHHHHHHC-CCeEEEEECCHHHHHHHHHHHHHhCCC--ceeEeccchhcccc-CCCCEEEEeccccc
Confidence 679999999999999999986 889999999999999999988777763 77888888766654 68999999999998
Q ss_pred CC--CHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCcEEEE
Q 016921 239 MP--DKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKA 316 (380)
Q Consensus 239 ~~--~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v~~ 316 (380)
++ +...++++++++|||||++++.++......+.. ...+..++++++.+++. +|+++..
T Consensus 107 ~~~~~~~~~l~~~~~~LkpgG~lli~~~~~~~~~~~~-----------------~~~~~~~~~~el~~~f~--~~~~~~~ 167 (195)
T TIGR00477 107 LQAGRVPEIIANMQAHTRPGGYNLIVAAMDTADYPCH-----------------MPFSFTFKEDELRQYYA--DWELLKY 167 (195)
T ss_pred CCHHHHHHHHHHHHHHhCCCcEEEEEEecccCCCCCC-----------------CCcCccCCHHHHHHHhC--CCeEEEe
Confidence 84 457899999999999999777665322211110 01122468999999997 6988877
Q ss_pred Eec
Q 016921 317 EDW 319 (380)
Q Consensus 317 ~~~ 319 (380)
.+-
T Consensus 168 ~e~ 170 (195)
T TIGR00477 168 NEA 170 (195)
T ss_pred ecc
Confidence 633
No 40
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.76 E-value=1.8e-17 Score=140.05 Aligned_cols=162 Identities=25% Similarity=0.353 Sum_probs=121.2
Q ss_pred HHHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCC
Q 016921 140 RMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDAL 218 (380)
Q Consensus 140 ~~~~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~ 218 (380)
+-..+++..+++.. ..+|.|+|||+|..+..|++++ ++.++|+|.|++|++.|+++. ++++|..+|+.
T Consensus 17 RPa~dLla~Vp~~~-----~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rl------p~~~f~~aDl~ 85 (257)
T COG4106 17 RPARDLLARVPLER-----PRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRL------PDATFEEADLR 85 (257)
T ss_pred CcHHHHHhhCCccc-----cceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhC------CCCceecccHh
Confidence 34566777777665 8999999999999999999999 899999999999999998765 58999999999
Q ss_pred CCCCCCCCccEEEeccccCCCCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchHHHH-HHHHHhhcc--CCCC
Q 016921 219 QQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQE-LLKKICDAY--YLPA 295 (380)
Q Consensus 219 ~~~~~~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~--~~~~ 295 (380)
++. +...+|+++++.++++++|-.+++..+...|.|||.|.+.....-.. +....+...... -+....... ...+
T Consensus 86 ~w~-p~~~~dllfaNAvlqWlpdH~~ll~rL~~~L~Pgg~LAVQmPdN~de-psH~~mr~~A~~~p~~~~l~~~~~~r~~ 163 (257)
T COG4106 86 TWK-PEQPTDLLFANAVLQWLPDHPELLPRLVSQLAPGGVLAVQMPDNLDE-PSHRLMRETADEAPFAQELGGRGLTRAP 163 (257)
T ss_pred hcC-CCCccchhhhhhhhhhccccHHHHHHHHHhhCCCceEEEECCCccCc-hhHHHHHHHHhcCchhhhhCccccccCC
Confidence 874 56889999999999999999999999999999999999976432111 111111111000 011111111 1234
Q ss_pred CCCHHHHHHHHHhCCCcEE
Q 016921 296 WCSTADYVKLLQSLSLEDI 314 (380)
Q Consensus 296 ~~~~~~~~~ll~~aGf~~v 314 (380)
..++..|.++|...+-++-
T Consensus 164 v~s~a~Yy~lLa~~~~rvD 182 (257)
T COG4106 164 LPSPAAYYELLAPLACRVD 182 (257)
T ss_pred CCCHHHHHHHhCcccceee
Confidence 6789999999998876543
No 41
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=99.74 E-value=3.1e-17 Score=147.19 Aligned_cols=155 Identities=23% Similarity=0.282 Sum_probs=115.6
Q ss_pred CCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEEeccccCC
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEH 238 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~ 238 (380)
+.+|||||||.|..+..++.+....|+|+|+++-.....+....-.|....+.+....++++|. .+.||+|+|.++|+|
T Consensus 116 gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgvE~Lp~-~~~FDtVF~MGVLYH 194 (315)
T PF08003_consen 116 GKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGVEDLPN-LGAFDTVFSMGVLYH 194 (315)
T ss_pred CCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHHHHHHHHHHHHhCCCccEEEcCcchhhccc-cCCcCEEEEeeehhc
Confidence 8999999999999999999884557999999998766544433333333334444467788876 789999999999999
Q ss_pred CCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCcEEEEEe
Q 016921 239 MPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAED 318 (380)
Q Consensus 239 ~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v~~~~ 318 (380)
..++-..|.++...|+|||.|++-+........ ..+.+ ...+.++...+.+| |...+..+|+++||++|++-+
T Consensus 195 rr~Pl~~L~~Lk~~L~~gGeLvLETlvi~g~~~--~~L~P--~~rYa~m~nv~FiP---s~~~L~~wl~r~gF~~v~~v~ 267 (315)
T PF08003_consen 195 RRSPLDHLKQLKDSLRPGGELVLETLVIDGDEN--TVLVP--EDRYAKMRNVWFIP---SVAALKNWLERAGFKDVRCVD 267 (315)
T ss_pred cCCHHHHHHHHHHhhCCCCEEEEEEeeecCCCc--eEEcc--CCcccCCCceEEeC---CHHHHHHHHHHcCCceEEEec
Confidence 999999999999999999999998765433211 11111 01233344444444 899999999999999999876
Q ss_pred cCC
Q 016921 319 WSQ 321 (380)
Q Consensus 319 ~~~ 321 (380)
...
T Consensus 268 ~~~ 270 (315)
T PF08003_consen 268 VSP 270 (315)
T ss_pred Ccc
Confidence 653
No 42
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.74 E-value=2e-16 Score=136.20 Aligned_cols=146 Identities=18% Similarity=0.135 Sum_probs=115.6
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEE
Q 016921 134 HRAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSF 212 (380)
Q Consensus 134 ~~~~~~~~~~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~ 212 (380)
.+.|...+++.+.....++ ++.+|||||||+|..+..++... +++|+|+|+++.|++.|+++++..++. ++++
T Consensus 26 ~~~~~~~~~d~l~l~~~l~-----~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~-~i~~ 99 (187)
T PRK00107 26 EELWERHILDSLAIAPYLP-----GGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLK-NVTV 99 (187)
T ss_pred HHHHHHHHHHHHHHHhhcC-----CCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCC-CEEE
Confidence 3455555656554433333 37899999999999999998765 789999999999999999999998875 5999
Q ss_pred EEcCCCCCCCCCCCccEEEeccccCCCCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchHHHHHHHHHhhccC
Q 016921 213 QVGDALQQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYY 292 (380)
Q Consensus 213 ~~~d~~~~~~~~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (380)
+.+|+.+++. .++||+|++.. +.+...+++.++++|||||++++....
T Consensus 100 ~~~d~~~~~~-~~~fDlV~~~~----~~~~~~~l~~~~~~LkpGG~lv~~~~~--------------------------- 147 (187)
T PRK00107 100 VHGRAEEFGQ-EEKFDVVTSRA----VASLSDLVELCLPLLKPGGRFLALKGR--------------------------- 147 (187)
T ss_pred EeccHhhCCC-CCCccEEEEcc----ccCHHHHHHHHHHhcCCCeEEEEEeCC---------------------------
Confidence 9999998776 67999999864 457789999999999999999997631
Q ss_pred CCCCCCHHHHHHHHHhCCCcEEEEEecCC
Q 016921 293 LPAWCSTADYVKLLQSLSLEDIKAEDWSQ 321 (380)
Q Consensus 293 ~~~~~~~~~~~~ll~~aGf~~v~~~~~~~ 321 (380)
....++.++.+..|+.+.....++.
T Consensus 148 ----~~~~~l~~~~~~~~~~~~~~~~~~~ 172 (187)
T PRK00107 148 ----DPEEEIAELPKALGGKVEEVIELTL 172 (187)
T ss_pred ----ChHHHHHHHHHhcCceEeeeEEEec
Confidence 1235566777777998777666553
No 43
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=99.73 E-value=7.7e-16 Score=142.84 Aligned_cols=201 Identities=20% Similarity=0.254 Sum_probs=124.4
Q ss_pred HHHHHHHHHHHhccch-hhHHHhhcccccc--cccCCCCCCCcccHHHHHHHHHHHHHHHcCCCCCCCCCCCEEEEECCC
Q 016921 92 ARELKEGIAEFYDESS-SLWEDIWGDHMHH--GFYEPDSSVSVSDHRAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCG 168 (380)
Q Consensus 92 ~~~~~~~i~~~yd~~~-~~y~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~vLDiGcG 168 (380)
-..-.+.|.++||..+ +.|..+|+..... ..+..-. .+.. .++.++..+.... ..++.+|||||||
T Consensus 86 ~~~~~~~V~~~Fd~~a~~~w~~iy~~~d~v~~~~l~~~~-----~~~~----~v~~~l~~l~~~~--~~~~~~VLDlGcG 154 (315)
T PLN02585 86 GGDDKEVVREYFNTTGFERWRKIYGETDEVNKVQLDIRL-----GHAQ----TVEKVLLWLAEDG--SLAGVTVCDAGCG 154 (315)
T ss_pred HHHHHHHHHHHhcccchhhHHHhcCCccccCceeeeccc-----ChHH----HHHHHHHHHHhcC--CCCCCEEEEecCC
Confidence 3345567888898764 5566666642211 1111000 0112 2333333332110 0237899999999
Q ss_pred cChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCC----CCCeEEEEcCCCCCCCCCCCccEEEeccccCCCCCH--
Q 016921 169 IGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGL----ADKVSFQVGDALQQPFPDGQFDLVWSMESGEHMPDK-- 242 (380)
Q Consensus 169 tG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~----~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~~~-- 242 (380)
+|.++..+++. +.+|+|+|+|+.|++.|+++....+. ..++.|...|+..+ +++||+|+|..+++|+++.
T Consensus 155 tG~~a~~la~~-g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l---~~~fD~Vv~~~vL~H~p~~~~ 230 (315)
T PLN02585 155 TGSLAIPLALE-GAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESL---SGKYDTVTCLDVLIHYPQDKA 230 (315)
T ss_pred CCHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhc---CCCcCEEEEcCEEEecCHHHH
Confidence 99999999986 88999999999999999999876421 13678999998654 4789999999999998763
Q ss_pred HHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchHHHHHHHHH---hhccC-CC--CCCCHHHHHHHHHhCCCcEEEE
Q 016921 243 SKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKI---CDAYY-LP--AWCSTADYVKLLQSLSLEDIKA 316 (380)
Q Consensus 243 ~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~-~~--~~~~~~~~~~ll~~aGf~~v~~ 316 (380)
..+++.+.+ +.+||. ++.. .. .. +....+... ..... .. .+.+.++++++|+++||+++..
T Consensus 231 ~~ll~~l~~-l~~g~l-iIs~-~p-----~~-----~~~~~l~~~g~~~~g~~~~~r~y~~s~eel~~lL~~AGf~v~~~ 297 (315)
T PLN02585 231 DGMIAHLAS-LAEKRL-IISF-AP-----KT-----LYYDILKRIGELFPGPSKATRAYLHAEADVERALKKAGWKVARR 297 (315)
T ss_pred HHHHHHHHh-hcCCEE-EEEe-CC-----cc-----hHHHHHHHHHhhcCCCCcCceeeeCCHHHHHHHHHHCCCEEEEE
Confidence 346666665 455554 4432 11 10 111122221 11111 11 1347999999999999998865
Q ss_pred EecC
Q 016921 317 EDWS 320 (380)
Q Consensus 317 ~~~~ 320 (380)
+...
T Consensus 298 ~~~~ 301 (315)
T PLN02585 298 EMTA 301 (315)
T ss_pred EEee
Confidence 5433
No 44
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=99.72 E-value=6e-16 Score=139.11 Aligned_cols=157 Identities=27% Similarity=0.332 Sum_probs=116.3
Q ss_pred CCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-CCCCCccEEEecccc
Q 016921 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-FPDGQFDLVWSMESG 236 (380)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-~~~~~fD~V~~~~~l 236 (380)
++.+|||||||+|.++..+++. +++++++|+++.+++.+++++...+. .+.+...|+.+.+ ...++||+|++..++
T Consensus 48 ~~~~vLdiG~G~G~~~~~l~~~-~~~v~~iD~s~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~fD~Ii~~~~l 124 (233)
T PRK05134 48 FGKRVLDVGCGGGILSESMARL-GADVTGIDASEENIEVARLHALESGL--KIDYRQTTAEELAAEHPGQFDVVTCMEML 124 (233)
T ss_pred CCCeEEEeCCCCCHHHHHHHHc-CCeEEEEcCCHHHHHHHHHHHHHcCC--ceEEEecCHHHhhhhcCCCccEEEEhhHh
Confidence 4889999999999999999886 78999999999999999998876554 5788888887764 345799999999999
Q ss_pred CCCCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchHHHHHHHHHhh--ccCCCCCCCHHHHHHHHHhCCCcEE
Q 016921 237 EHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICD--AYYLPAWCSTADYVKLLQSLSLEDI 314 (380)
Q Consensus 237 ~~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ll~~aGf~~v 314 (380)
+|++++..+++.+.++|+|||.+++..+..... ...........+..... ......+++++++.++|+++||+++
T Consensus 125 ~~~~~~~~~l~~~~~~L~~gG~l~v~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~v 201 (233)
T PRK05134 125 EHVPDPASFVRACAKLVKPGGLVFFSTLNRNLK---SYLLAIVGAEYVLRMLPKGTHDYKKFIKPSELAAWLRQAGLEVQ 201 (233)
T ss_pred hccCCHHHHHHHHHHHcCCCcEEEEEecCCChH---HHHHHHhhHHHHhhhcCcccCchhhcCCHHHHHHHHHHCCCeEe
Confidence 999999999999999999999999886532110 00000000000111100 0112246789999999999999999
Q ss_pred EEEecC
Q 016921 315 KAEDWS 320 (380)
Q Consensus 315 ~~~~~~ 320 (380)
+...+.
T Consensus 202 ~~~~~~ 207 (233)
T PRK05134 202 DITGLH 207 (233)
T ss_pred eeeeEE
Confidence 875433
No 45
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=99.72 E-value=9.8e-16 Score=137.42 Aligned_cols=151 Identities=23% Similarity=0.316 Sum_probs=107.8
Q ss_pred CCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEEeccccC
Q 016921 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGE 237 (380)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~ 237 (380)
++.+|||||||+|.++..+++. +..|+|+|+|+.+++.|+++....+...++.+..+|+.. .+++||+|++..+++
T Consensus 63 ~~~~vLDvGcG~G~~~~~l~~~-~~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~---~~~~fD~v~~~~~l~ 138 (230)
T PRK07580 63 TGLRILDAGCGVGSLSIPLARR-GAKVVASDISPQMVEEARERAPEAGLAGNITFEVGDLES---LLGRFDTVVCLDVLI 138 (230)
T ss_pred CCCEEEEEeCCCCHHHHHHHHc-CCEEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCchh---ccCCcCEEEEcchhh
Confidence 3789999999999999999886 678999999999999999998877765689999999533 357899999999999
Q ss_pred CCCC--HHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchHHHHHHHHHhhcc---CCCCCCCHHHHHHHHHhCCCc
Q 016921 238 HMPD--KSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAY---YLPAWCSTADYVKLLQSLSLE 312 (380)
Q Consensus 238 ~~~~--~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~ll~~aGf~ 312 (380)
|+++ ...+++++.+.+++++.+.+.. . ..... ....+....... ....+.+.+++.++++++||+
T Consensus 139 ~~~~~~~~~~l~~l~~~~~~~~~i~~~~--~-------~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~ 208 (230)
T PRK07580 139 HYPQEDAARMLAHLASLTRGSLIFTFAP--Y-------TPLLA-LLHWIGGLFPGPSRTTRIYPHREKGIRRALAAAGFK 208 (230)
T ss_pred cCCHHHHHHHHHHHHhhcCCeEEEEECC--c-------cHHHH-HHHHhccccCCccCCCCccccCHHHHHHHHHHCCCc
Confidence 9864 4678888888765444332211 0 00000 011111111111 011246789999999999999
Q ss_pred EEEEEecCCC
Q 016921 313 DIKAEDWSQN 322 (380)
Q Consensus 313 ~v~~~~~~~~ 322 (380)
+++.+.+...
T Consensus 209 ~~~~~~~~~~ 218 (230)
T PRK07580 209 VVRTERISSG 218 (230)
T ss_pred eEeeeeccch
Confidence 9998776644
No 46
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.70 E-value=4.9e-16 Score=143.82 Aligned_cols=137 Identities=18% Similarity=0.283 Sum_probs=109.3
Q ss_pred CCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEEeccccCC
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEH 238 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~ 238 (380)
+.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.+++++...++ ++.+...|+...++ +++||+|++..+++|
T Consensus 121 ~~~vLDlGcG~G~~~~~la~~-g~~V~avD~s~~ai~~~~~~~~~~~l--~v~~~~~D~~~~~~-~~~fD~I~~~~vl~~ 196 (287)
T PRK12335 121 PGKALDLGCGQGRNSLYLALL-GFDVTAVDINQQSLENLQEIAEKENL--NIRTGLYDINSASI-QEEYDFILSTVVLMF 196 (287)
T ss_pred CCCEEEeCCCCCHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHHcCC--ceEEEEechhcccc-cCCccEEEEcchhhh
Confidence 569999999999999999986 88999999999999999999888776 68889999887655 678999999999999
Q ss_pred CC--CHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCcEEEE
Q 016921 239 MP--DKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKA 316 (380)
Q Consensus 239 ~~--~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v~~ 316 (380)
++ +...+++++.++|+|||++++.........+.. ...+..++++++.+++. +|+++..
T Consensus 197 l~~~~~~~~l~~~~~~LkpgG~~l~v~~~~~~~~~~~-----------------~p~~~~~~~~el~~~~~--~~~i~~~ 257 (287)
T PRK12335 197 LNRERIPAIIKNMQEHTNPGGYNLIVCAMDTEDYPCP-----------------MPFSFTFKEGELKDYYQ--DWEIVKY 257 (287)
T ss_pred CCHHHHHHHHHHHHHhcCCCcEEEEEEecccccCCCC-----------------CCCCcccCHHHHHHHhC--CCEEEEE
Confidence 85 567899999999999999777553322211100 01122468899999997 5988876
Q ss_pred Ee
Q 016921 317 ED 318 (380)
Q Consensus 317 ~~ 318 (380)
.+
T Consensus 258 ~e 259 (287)
T PRK12335 258 NE 259 (287)
T ss_pred ec
Confidence 43
No 47
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=99.70 E-value=1.1e-15 Score=136.66 Aligned_cols=153 Identities=24% Similarity=0.308 Sum_probs=116.7
Q ss_pred CCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCC-CCCccEEEecccc
Q 016921 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFP-DGQFDLVWSMESG 236 (380)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~~fD~V~~~~~l 236 (380)
.+.+|||+|||+|.++..+++. +..++|+|+++.+++.+++++...+. .++.+...|+.+.+.+ .++||+|++..++
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~-~~~v~~iD~s~~~~~~a~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~D~i~~~~~l 122 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARL-GANVTGIDASEENIEVAKLHAKKDPL-LKIEYRCTSVEDLAEKGAKSFDVVTCMEVL 122 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHHcCC-CceEEEeCCHHHhhcCCCCCccEEEehhHH
Confidence 3789999999999999998875 67899999999999999998876654 2688999998876543 3789999999999
Q ss_pred CCCCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchHHHHH-----HHHHhh--ccCCCCCCCHHHHHHHHHhC
Q 016921 237 EHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQEL-----LKKICD--AYYLPAWCSTADYVKLLQSL 309 (380)
Q Consensus 237 ~~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~--~~~~~~~~~~~~~~~ll~~a 309 (380)
+|+.++..+++++.++|+|||.+++....... ....... ...... ......+.+.+++.++++++
T Consensus 123 ~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 194 (224)
T TIGR01983 123 EHVPDPQAFIRACAQLLKPGGILFFSTINRTP--------KSYLLAIVGAEYILRIVPKGTHDWEKFIKPSELTSWLESA 194 (224)
T ss_pred HhCCCHHHHHHHHHHhcCCCcEEEEEecCCCc--------hHHHHHHHhhhhhhhcCCCCcCChhhcCCHHHHHHHHHHc
Confidence 99999999999999999999999987643211 0111110 100100 01112356889999999999
Q ss_pred CCcEEEEEecC
Q 016921 310 SLEDIKAEDWS 320 (380)
Q Consensus 310 Gf~~v~~~~~~ 320 (380)
||+++++....
T Consensus 195 G~~i~~~~~~~ 205 (224)
T TIGR01983 195 GLRVKDVKGLV 205 (224)
T ss_pred CCeeeeeeeEE
Confidence 99999876443
No 48
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.69 E-value=2.4e-15 Score=129.29 Aligned_cols=127 Identities=17% Similarity=0.147 Sum_probs=102.1
Q ss_pred CCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEEeccccC
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGE 237 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~ 237 (380)
+.+|||+|||+|.++..++... +.+|+|+|+|+.|++.+++++++.++. +++++++|+.+++ ..++||+|++..
T Consensus 43 ~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~-~i~~i~~d~~~~~-~~~~fD~I~s~~--- 117 (181)
T TIGR00138 43 GKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLN-NVEIVNGRAEDFQ-HEEQFDVITSRA--- 117 (181)
T ss_pred CCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCC-CeEEEecchhhcc-ccCCccEEEehh---
Confidence 7899999999999999998765 578999999999999999998888774 6999999998874 357999999865
Q ss_pred CCCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHHHHHHHHHh---CCCcEE
Q 016921 238 HMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQS---LSLEDI 314 (380)
Q Consensus 238 ~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~---aGf~~v 314 (380)
+.+...+++.+.++|+|||.+++.... ....++..+.+. .||+.+
T Consensus 118 -~~~~~~~~~~~~~~LkpgG~lvi~~~~-------------------------------~~~~~~~~~~e~~~~~~~~~~ 165 (181)
T TIGR00138 118 -LASLNVLLELTLNLLKVGGYFLAYKGK-------------------------------KYLDEIEEAKRKCQVLGVEPL 165 (181)
T ss_pred -hhCHHHHHHHHHHhcCCCCEEEEEcCC-------------------------------CcHHHHHHHHHhhhhcCceEe
Confidence 346677889999999999999986410 123344444444 799999
Q ss_pred EEEecCCC
Q 016921 315 KAEDWSQN 322 (380)
Q Consensus 315 ~~~~~~~~ 322 (380)
+...++.+
T Consensus 166 ~~~~~~~~ 173 (181)
T TIGR00138 166 EVPPLTGP 173 (181)
T ss_pred eccccCCC
Confidence 98877655
No 49
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=99.68 E-value=2.9e-16 Score=132.52 Aligned_cols=138 Identities=17% Similarity=0.267 Sum_probs=100.5
Q ss_pred EEEeCCHHHHHHHHHHHHHc--CCCCCeEEEEcCCCCCCCCCCCccEEEeccccCCCCCHHHHHHHHHHhcCCCcEEEEE
Q 016921 185 QGITLSPVQAQRANALAAAR--GLADKVSFQVGDALQQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIV 262 (380)
Q Consensus 185 ~giD~s~~~~~~a~~~~~~~--~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~ 262 (380)
+|+|+|+.|++.|+++.... +...+++|+++|++++|+++++||+|++.+++++++|+.+++++++|+|||||.+++.
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~i~ 80 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMGYGLRNVVDRLRAMKEMYRVLKPGSRVSIL 80 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCCCCeeEEEecchhhcCCCHHHHHHHHHHHcCcCeEEEEE
Confidence 48999999999998776532 2234799999999999999999999999999999999999999999999999999999
Q ss_pred eccCCCCCCCccccchHHHH-------HHHHHhhcc-----CCCCCCCHHHHHHHHHhCCCcEEEEEecCCCc
Q 016921 263 TWCHRDLAPSEESLQPWEQE-------LLKKICDAY-----YLPAWCSTADYVKLLQSLSLEDIKAEDWSQNV 323 (380)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~-----~~~~~~~~~~~~~ll~~aGf~~v~~~~~~~~~ 323 (380)
++..+..... ..+..+... .+......+ .+..+.+++++.++|+++||+.+........+
T Consensus 81 d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~y~yl~~si~~f~~~~el~~ll~~aGF~~~~~~~~~~g~ 152 (160)
T PLN02232 81 DFNKSNQSVT-TFMQGWMIDNVVVPVATVYDLAKEYEYLKYSINGYLTGEELETLALEAGFSSACHYEISGGF 152 (160)
T ss_pred ECCCCChHHH-HHHHHHHccchHhhhhHHhCChHHHHhHHHHHHHCcCHHHHHHHHHHcCCCcceEEECcchH
Confidence 9875432100 000000000 000000111 11236789999999999999999877665443
No 50
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=99.67 E-value=2e-15 Score=129.19 Aligned_cols=137 Identities=24% Similarity=0.428 Sum_probs=102.9
Q ss_pred CCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEEeccccCC
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEH 238 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~ 238 (380)
+.++||+|||.|..+..||++ |..|+++|+|+..++.+++.+.+.+++ ++..+.|+.+..++ +.||+|++..+++|
T Consensus 31 ~g~~LDlgcG~GRNalyLA~~-G~~VtAvD~s~~al~~l~~~a~~~~l~--i~~~~~Dl~~~~~~-~~yD~I~st~v~~f 106 (192)
T PF03848_consen 31 PGKALDLGCGEGRNALYLASQ-GFDVTAVDISPVALEKLQRLAEEEGLD--IRTRVADLNDFDFP-EEYDFIVSTVVFMF 106 (192)
T ss_dssp SSEEEEES-TTSHHHHHHHHT-T-EEEEEESSHHHHHHHHHHHHHTT-T--EEEEE-BGCCBS-T-TTEEEEEEESSGGG
T ss_pred CCcEEEcCCCCcHHHHHHHHC-CCeEEEEECCHHHHHHHHHHHhhcCce--eEEEEecchhcccc-CCcCEEEEEEEecc
Confidence 789999999999999999998 999999999999999999998888874 99999999887765 78999999888888
Q ss_pred CC--CHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCcEEEE
Q 016921 239 MP--DKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKA 316 (380)
Q Consensus 239 ~~--~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v~~ 316 (380)
++ ....+++.+...++|||++++..+......+... ..+-.+.+.++...+. ||+++..
T Consensus 107 L~~~~~~~i~~~m~~~~~pGG~~li~~~~~~~d~p~~~-----------------~~~f~~~~~EL~~~y~--dW~il~y 167 (192)
T PF03848_consen 107 LQRELRPQIIENMKAATKPGGYNLIVTFMETPDYPCPS-----------------PFPFLLKPGELREYYA--DWEILKY 167 (192)
T ss_dssp S-GGGHHHHHHHHHHTEEEEEEEEEEEEB--SSS--SS-------------------S--B-TTHHHHHTT--TSEEEEE
T ss_pred CCHHHHHHHHHHHHhhcCCcEEEEEEEecccCCCCCCC-----------------CCCcccCHHHHHHHhC--CCeEEEE
Confidence 84 4578999999999999998887654322221111 0011245678888887 8988876
Q ss_pred Ee
Q 016921 317 ED 318 (380)
Q Consensus 317 ~~ 318 (380)
.+
T Consensus 168 ~E 169 (192)
T PF03848_consen 168 NE 169 (192)
T ss_dssp EE
T ss_pred Ec
Confidence 43
No 51
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=99.66 E-value=2.7e-15 Score=131.47 Aligned_cols=99 Identities=21% Similarity=0.344 Sum_probs=85.5
Q ss_pred CCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEEeccccC
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGE 237 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~ 237 (380)
+.+|||||||+|.++..+++.. +.+++|+|+|+.|++.|+++. +++.+.++|+.+ ++++++||+|++..+++
T Consensus 44 ~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~------~~~~~~~~d~~~-~~~~~sfD~V~~~~vL~ 116 (204)
T TIGR03587 44 IASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYL------PNINIIQGSLFD-PFKDNFFDLVLTKGVLI 116 (204)
T ss_pred CCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhC------CCCcEEEeeccC-CCCCCCEEEEEECChhh
Confidence 7789999999999999998875 689999999999999998754 357888999888 78889999999999999
Q ss_pred CCC--CHHHHHHHHHHhcCCCcEEEEEeccC
Q 016921 238 HMP--DKSKFVSELARVTAPAGTIIIVTWCH 266 (380)
Q Consensus 238 ~~~--~~~~~l~~~~r~LkpgG~l~~~~~~~ 266 (380)
|++ +..++++++++++ ++.+++.++..
T Consensus 117 hl~p~~~~~~l~el~r~~--~~~v~i~e~~~ 145 (204)
T TIGR03587 117 HINPDNLPTAYRELYRCS--NRYILIAEYYN 145 (204)
T ss_pred hCCHHHHHHHHHHHHhhc--CcEEEEEEeeC
Confidence 995 3578899999987 57888888643
No 52
>PRK06202 hypothetical protein; Provisional
Probab=99.65 E-value=5.1e-15 Score=132.96 Aligned_cols=147 Identities=17% Similarity=0.178 Sum_probs=105.3
Q ss_pred CCCEEEEECCCcChHHHHHHHHc-----CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEEe
Q 016921 158 RPKNVVDVGCGIGGSSRYLAKKF-----GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWS 232 (380)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~-----~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~ 232 (380)
++.+|||||||+|.++..+++.. +.+|+|+|+|+.|++.|+++... .++.+.+.+...++.++++||+|++
T Consensus 60 ~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~----~~~~~~~~~~~~l~~~~~~fD~V~~ 135 (232)
T PRK06202 60 RPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRR----PGVTFRQAVSDELVAEGERFDVVTS 135 (232)
T ss_pred CCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhcccc----CCCeEEEEecccccccCCCccEEEE
Confidence 37899999999999998887642 35999999999999999886532 2467777777777767789999999
Q ss_pred ccccCCCCCH--HHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchHHHHHHHHHh-hc-------cCCCCCCCHHHH
Q 016921 233 MESGEHMPDK--SKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKIC-DA-------YYLPAWCSTADY 302 (380)
Q Consensus 233 ~~~l~~~~~~--~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-------~~~~~~~~~~~~ 302 (380)
+.+++|+++. ..++++++++++ |.+++.++..... .+.... ....... .. ..+.++++++++
T Consensus 136 ~~~lhh~~d~~~~~~l~~~~r~~~--~~~~i~dl~~~~~-----~~~~~~-~~~~~~~~~~~~~~d~~~s~~~~~~~~el 207 (232)
T PRK06202 136 NHFLHHLDDAEVVRLLADSAALAR--RLVLHNDLIRSRL-----AYALFW-AGTRLLSRSSFVHTDGLLSVRRSYTPAEL 207 (232)
T ss_pred CCeeecCChHHHHHHHHHHHHhcC--eeEEEeccccCHH-----HHHHHH-HHHHHhccCceeeccchHHHHhhcCHHHH
Confidence 9999999875 579999999998 6667766543210 000000 0000000 00 112246899999
Q ss_pred HHHHHhCCCcEEEEE
Q 016921 303 VKLLQSLSLEDIKAE 317 (380)
Q Consensus 303 ~~ll~~aGf~~v~~~ 317 (380)
.+++++ ||++....
T Consensus 208 ~~ll~~-Gf~~~~~~ 221 (232)
T PRK06202 208 AALAPQ-GWRVERQW 221 (232)
T ss_pred HHHhhC-CCeEEecc
Confidence 999999 99977643
No 53
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.65 E-value=2.1e-16 Score=122.88 Aligned_cols=94 Identities=36% Similarity=0.648 Sum_probs=80.6
Q ss_pred EEEECCCcChHHHHHHHHc--C--CEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEEecc-cc
Q 016921 162 VVDVGCGIGGSSRYLAKKF--G--AKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSME-SG 236 (380)
Q Consensus 162 vLDiGcGtG~~~~~l~~~~--~--~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~-~l 236 (380)
|||+|||+|..+..+++.+ + .+++|+|+|+.|++.++++....+. +++++++|+.+++..+++||+|++.+ ++
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~--~~~~~~~D~~~l~~~~~~~D~v~~~~~~~ 78 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGP--KVRFVQADARDLPFSDGKFDLVVCSGLSL 78 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTT--TSEEEESCTTCHHHHSSSEEEEEE-TTGG
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCC--ceEEEECCHhHCcccCCCeeEEEEcCCcc
Confidence 7999999999999999885 3 7999999999999999999987664 79999999999887788999999954 49
Q ss_pred CCCCC--HHHHHHHHHHhcCCCc
Q 016921 237 EHMPD--KSKFVSELARVTAPAG 257 (380)
Q Consensus 237 ~~~~~--~~~~l~~~~r~LkpgG 257 (380)
+|+.+ ..++++++.++|||||
T Consensus 79 ~~~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 79 HHLSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp GGSSHHHHHHHHHHHHHTEEEEE
T ss_pred CCCCHHHHHHHHHHHHHHhCCCC
Confidence 99864 5789999999999998
No 54
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.65 E-value=1.3e-14 Score=125.92 Aligned_cols=126 Identities=17% Similarity=0.235 Sum_probs=102.3
Q ss_pred CCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEEeccccC
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGE 237 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~ 237 (380)
+.+|||||||+|.++..+++.. +.+|+++|+++.+++.+++++...++ .+++++.+|+.. ++ .++||+|++.....
T Consensus 32 ~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~-~~i~~~~~d~~~-~~-~~~~D~v~~~~~~~ 108 (187)
T PRK08287 32 AKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGC-GNIDIIPGEAPI-EL-PGKADAIFIGGSGG 108 (187)
T ss_pred CCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCC-CCeEEEecCchh-hc-CcCCCEEEECCCcc
Confidence 8899999999999999999876 57999999999999999999887776 479999998753 33 36899999876544
Q ss_pred CCCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCcEEEEE
Q 016921 238 HMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAE 317 (380)
Q Consensus 238 ~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v~~~ 317 (380)
....+++.+.+.|+|||++++..... .+.+++.++++++||..+++.
T Consensus 109 ---~~~~~l~~~~~~Lk~gG~lv~~~~~~------------------------------~~~~~~~~~l~~~g~~~~~~~ 155 (187)
T PRK08287 109 ---NLTAIIDWSLAHLHPGGRLVLTFILL------------------------------ENLHSALAHLEKCGVSELDCV 155 (187)
T ss_pred ---CHHHHHHHHHHhcCCCeEEEEEEecH------------------------------hhHHHHHHHHHHCCCCcceEE
Confidence 45678999999999999998865210 134677789999999988765
Q ss_pred ecC
Q 016921 318 DWS 320 (380)
Q Consensus 318 ~~~ 320 (380)
.+.
T Consensus 156 ~~~ 158 (187)
T PRK08287 156 QLQ 158 (187)
T ss_pred EEE
Confidence 443
No 55
>PRK14967 putative methyltransferase; Provisional
Probab=99.65 E-value=2.9e-14 Score=127.22 Aligned_cols=132 Identities=17% Similarity=0.164 Sum_probs=99.1
Q ss_pred CCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEEeccccCC
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEH 238 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~ 238 (380)
+.+|||+|||+|.++..+++....+++++|+++.+++.+++++...+. ++.++.+|+.+. +++++||+|+++--...
T Consensus 37 ~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a~~n~~~~~~--~~~~~~~d~~~~-~~~~~fD~Vi~npPy~~ 113 (223)
T PRK14967 37 GRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARLNALLAGV--DVDVRRGDWARA-VEFRPFDVVVSNPPYVP 113 (223)
T ss_pred CCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhCC--eeEEEECchhhh-ccCCCeeEEEECCCCCC
Confidence 789999999999999999875234999999999999999998877664 588899998763 45679999998742221
Q ss_pred CC---------------------CHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCC
Q 016921 239 MP---------------------DKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWC 297 (380)
Q Consensus 239 ~~---------------------~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (380)
.. ....+++++.++|||||++++..... .
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~~------------------------------~ 163 (223)
T PRK14967 114 APPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSEL------------------------------S 163 (223)
T ss_pred CCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEecc------------------------------c
Confidence 11 13567889999999999999865211 1
Q ss_pred CHHHHHHHHHhCCCcEEEEEecCCCc
Q 016921 298 STADYVKLLQSLSLEDIKAEDWSQNV 323 (380)
Q Consensus 298 ~~~~~~~ll~~aGf~~v~~~~~~~~~ 323 (380)
...++.+.+++.||..........++
T Consensus 164 ~~~~~~~~l~~~g~~~~~~~~~~~~~ 189 (223)
T PRK14967 164 GVERTLTRLSEAGLDAEVVASQWIPF 189 (223)
T ss_pred CHHHHHHHHHHCCCCeEEEEeeccCc
Confidence 23567788899999866655444443
No 56
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=99.64 E-value=8e-15 Score=127.98 Aligned_cols=144 Identities=22% Similarity=0.279 Sum_probs=103.8
Q ss_pred CCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCC-C-CCCCCCccEEEecccc
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ-Q-PFPDGQFDLVWSMESG 236 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~-~~~~~~fD~V~~~~~l 236 (380)
+.+|||||||+|.++..+++..+..++|+|+++.+++.+++ .+++++++|+.+ + ++++++||+|++..++
T Consensus 14 ~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i~~a~~--------~~~~~~~~d~~~~l~~~~~~sfD~Vi~~~~l 85 (194)
T TIGR02081 14 GSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVLACVA--------RGVNVIQGDLDEGLEAFPDKSFDYVILSQTL 85 (194)
T ss_pred CCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHHHHHHH--------cCCeEEEEEhhhcccccCCCCcCEEEEhhHh
Confidence 77999999999999999987667789999999999988764 247888899876 4 3667899999999999
Q ss_pred CCCCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchHHHHHHHH-Hh---h----cc---CCCCCCCHHHHHHH
Q 016921 237 EHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKK-IC---D----AY---YLPAWCSTADYVKL 305 (380)
Q Consensus 237 ~~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~----~~---~~~~~~~~~~~~~l 305 (380)
+|++++..+++++.+++++ +++..... .... .....+.. .. . .+ ....+++.+++.++
T Consensus 86 ~~~~d~~~~l~e~~r~~~~---~ii~~p~~-------~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~l 154 (194)
T TIGR02081 86 QATRNPEEILDEMLRVGRH---AIVSFPNF-------GYWR-VRWSILTKGRMPVTGELPYDWYNTPNIHFCTIADFEDL 154 (194)
T ss_pred HcCcCHHHHHHHHHHhCCe---EEEEcCCh-------hHHH-HHHHHHhCCccccCCCCCccccCCCCcccCcHHHHHHH
Confidence 9999999999999887654 33432110 0000 00000000 00 0 00 01236799999999
Q ss_pred HHhCCCcEEEEEecCC
Q 016921 306 LQSLSLEDIKAEDWSQ 321 (380)
Q Consensus 306 l~~aGf~~v~~~~~~~ 321 (380)
++++||++++...+..
T Consensus 155 l~~~Gf~v~~~~~~~~ 170 (194)
T TIGR02081 155 CGELNLRILDRAAFDV 170 (194)
T ss_pred HHHCCCEEEEEEEecc
Confidence 9999999999887754
No 57
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=99.64 E-value=3.2e-15 Score=126.32 Aligned_cols=125 Identities=22% Similarity=0.341 Sum_probs=94.3
Q ss_pred CCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEEeccccCC
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEH 238 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~ 238 (380)
-.++||+|||.|.++..|+.+ ..+++++|+|+..++.|+++.... ++|+|.++|+.+. .|+++||+|++..++++
T Consensus 44 y~~alEvGCs~G~lT~~LA~r-Cd~LlavDis~~Al~~Ar~Rl~~~---~~V~~~~~dvp~~-~P~~~FDLIV~SEVlYY 118 (201)
T PF05401_consen 44 YRRALEVGCSIGVLTERLAPR-CDRLLAVDISPRALARARERLAGL---PHVEWIQADVPEF-WPEGRFDLIVLSEVLYY 118 (201)
T ss_dssp EEEEEEE--TTSHHHHHHGGG-EEEEEEEES-HHHHHHHHHHTTT----SSEEEEES-TTT----SS-EEEEEEES-GGG
T ss_pred cceeEecCCCccHHHHHHHHh-hCceEEEeCCHHHHHHHHHhcCCC---CCeEEEECcCCCC-CCCCCeeEEEEehHhHc
Confidence 679999999999999999998 568999999999999999998643 5899999999875 46899999999999999
Q ss_pred CCC---HHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHHHHHHHHHhC
Q 016921 239 MPD---KSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSL 309 (380)
Q Consensus 239 ~~~---~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~a 309 (380)
+.+ ...+++.+...|+|||.|++..+. ......|+.+ +..+.+.++|++.
T Consensus 119 L~~~~~L~~~l~~l~~~L~pgG~LV~g~~r-------------------d~~c~~wgh~--~ga~tv~~~~~~~ 171 (201)
T PF05401_consen 119 LDDAEDLRAALDRLVAALAPGGHLVFGHAR-------------------DANCRRWGHA--AGAETVLEMLQEH 171 (201)
T ss_dssp SSSHHHHHHHHHHHHHTEEEEEEEEEEEE--------------------HHHHHHTT-S----HHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhCCCCEEEEEEec-------------------CCcccccCcc--cchHHHHHHHHHH
Confidence 975 357899999999999999998842 1122334433 5678888888874
No 58
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.64 E-value=6.7e-17 Score=125.22 Aligned_cols=96 Identities=29% Similarity=0.438 Sum_probs=66.5
Q ss_pred EEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC--CCCCCccEEEeccccCCC
Q 016921 163 VDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP--FPDGQFDLVWSMESGEHM 239 (380)
Q Consensus 163 LDiGcGtG~~~~~l~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--~~~~~fD~V~~~~~l~~~ 239 (380)
||||||+|.++..+++.. ..+++|+|+|+.|++.+++++...+. .+......+..+.. ...++||+|++..+++|+
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l 79 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGN-DNFERLRFDVLDLFDYDPPESFDLVVASNVLHHL 79 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT----EEEEE--SSS---CCC----SEEEEE-TTS--
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCC-cceeEEEeecCChhhcccccccceehhhhhHhhh
Confidence 799999999999999986 68999999999999999998887653 23334444433321 123699999999999999
Q ss_pred CCHHHHHHHHHHhcCCCcEE
Q 016921 240 PDKSKFVSELARVTAPAGTI 259 (380)
Q Consensus 240 ~~~~~~l~~~~r~LkpgG~l 259 (380)
+++..++++++++|||||+|
T Consensus 80 ~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 80 EDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp S-HHHHHHHHTTT-TSS-EE
T ss_pred hhHHHHHHHHHHHcCCCCCC
Confidence 99999999999999999986
No 59
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.63 E-value=7.5e-15 Score=129.11 Aligned_cols=112 Identities=19% Similarity=0.211 Sum_probs=93.2
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCC
Q 016921 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDAL 218 (380)
Q Consensus 141 ~~~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~--~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~ 218 (380)
.+..+++.+.+.+ +.+|||||||+|..+..+++.. +.+|+++|+++.+++.|++++...++..+++++.+|+.
T Consensus 60 ~~~~~~~~l~~~~-----~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~ 134 (205)
T PRK13944 60 MVAMMCELIEPRP-----GMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGK 134 (205)
T ss_pred HHHHHHHhcCCCC-----CCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcc
Confidence 4555666665543 8899999999999999998875 46999999999999999999988887667999999998
Q ss_pred CCCCCCCCccEEEeccccCCCCCHHHHHHHHHHhcCCCcEEEEEe
Q 016921 219 QQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 219 ~~~~~~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~ 263 (380)
+.....++||+|++..++.+++ .++.+.|+|||+|++..
T Consensus 135 ~~~~~~~~fD~Ii~~~~~~~~~------~~l~~~L~~gG~lvi~~ 173 (205)
T PRK13944 135 RGLEKHAPFDAIIVTAAASTIP------SALVRQLKDGGVLVIPV 173 (205)
T ss_pred cCCccCCCccEEEEccCcchhh------HHHHHhcCcCcEEEEEE
Confidence 7544457999999998887764 46889999999998854
No 60
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.63 E-value=2.2e-14 Score=123.62 Aligned_cols=130 Identities=16% Similarity=0.247 Sum_probs=106.4
Q ss_pred CCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEEeccccCC
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEH 238 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~ 238 (380)
+.+|||+|||+|.++..+++. +.+|+++|+|+.+++.+++++...+. +++++.+|+.+.. .++||+|+++..+++
T Consensus 20 ~~~vLdlG~G~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~--~~~fD~Vi~n~p~~~ 94 (179)
T TIGR00537 20 PDDVLEIGAGTGLVAIRLKGK-GKCILTTDINPFAVKELRENAKLNNV--GLDVVMTDLFKGV--RGKFDVILFNPPYLP 94 (179)
T ss_pred CCeEEEeCCChhHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHHcCC--ceEEEEccccccc--CCcccEEEECCCCCC
Confidence 678999999999999999987 55999999999999999999887664 5889999987653 458999999877766
Q ss_pred CCC---------------------HHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCC
Q 016921 239 MPD---------------------KSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWC 297 (380)
Q Consensus 239 ~~~---------------------~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (380)
.++ ...+++++.++|||||.+++..... .
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~------------------------------~ 144 (179)
T TIGR00537 95 LEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSL------------------------------N 144 (179)
T ss_pred CcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEecc------------------------------C
Confidence 643 2467999999999999999976321 1
Q ss_pred CHHHHHHHHHhCCCcEEEEEecCCCc
Q 016921 298 STADYVKLLQSLSLEDIKAEDWSQNV 323 (380)
Q Consensus 298 ~~~~~~~ll~~aGf~~v~~~~~~~~~ 323 (380)
...++.+.|+++||+...+.......
T Consensus 145 ~~~~~~~~l~~~gf~~~~~~~~~~~~ 170 (179)
T TIGR00537 145 GEPDTFDKLDERGFRYEIVAERGLFF 170 (179)
T ss_pred ChHHHHHHHHhCCCeEEEEEEeecCc
Confidence 24678899999999998887766544
No 61
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.63 E-value=5e-15 Score=146.97 Aligned_cols=139 Identities=19% Similarity=0.284 Sum_probs=107.7
Q ss_pred CCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCC--CCCCCCCccEEEecccc
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ--QPFPDGQFDLVWSMESG 236 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~--~~~~~~~fD~V~~~~~l 236 (380)
+.+|||||||+|.++..+++. +.+|+|+|+++.|++.+++.. +..+++.++++|+.. +++++++||+|++..++
T Consensus 38 ~~~vLDlGcG~G~~~~~la~~-~~~v~giD~s~~~l~~a~~~~---~~~~~i~~~~~d~~~~~~~~~~~~fD~I~~~~~l 113 (475)
T PLN02336 38 GKSVLELGAGIGRFTGELAKK-AGQVIALDFIESVIKKNESIN---GHYKNVKFMCADVTSPDLNISDGSVDLIFSNWLL 113 (475)
T ss_pred CCEEEEeCCCcCHHHHHHHhh-CCEEEEEeCCHHHHHHHHHHh---ccCCceEEEEecccccccCCCCCCEEEEehhhhH
Confidence 679999999999999999987 679999999999998876532 223579999999863 56778899999999999
Q ss_pred CCCCC--HHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCcEE
Q 016921 237 EHMPD--KSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDI 314 (380)
Q Consensus 237 ~~~~~--~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v 314 (380)
+|+++ ...++++++++|||||++++.+.+......... ......+.....|.+++.++||..+
T Consensus 114 ~~l~~~~~~~~l~~~~r~Lk~gG~l~~~d~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~f~~~~~~~~ 178 (475)
T PLN02336 114 MYLSDKEVENLAERMVKWLKVGGYIFFRESCFHQSGDSKR---------------KNNPTHYREPRFYTKVFKECHTRDE 178 (475)
T ss_pred HhCCHHHHHHHHHHHHHhcCCCeEEEEEeccCCCCCcccc---------------cCCCCeecChHHHHHHHHHheeccC
Confidence 99976 478999999999999999998864322110000 0011123457789999999998876
Q ss_pred EE
Q 016921 315 KA 316 (380)
Q Consensus 315 ~~ 316 (380)
..
T Consensus 179 ~~ 180 (475)
T PLN02336 179 DG 180 (475)
T ss_pred CC
Confidence 53
No 62
>PLN03075 nicotianamine synthase; Provisional
Probab=99.63 E-value=2e-14 Score=130.78 Aligned_cols=104 Identities=22% Similarity=0.336 Sum_probs=88.2
Q ss_pred CCEEEEECCCcChH-HHHHHHH-c-CCEEEEEeCCHHHHHHHHHHHHH-cCCCCCeEEEEcCCCCCCCCCCCccEEEecc
Q 016921 159 PKNVVDVGCGIGGS-SRYLAKK-F-GAKCQGITLSPVQAQRANALAAA-RGLADKVSFQVGDALQQPFPDGQFDLVWSME 234 (380)
Q Consensus 159 ~~~vLDiGcGtG~~-~~~l~~~-~-~~~v~giD~s~~~~~~a~~~~~~-~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~ 234 (380)
+.+|+|||||.|.+ +..++.. + +.+++|+|+++++++.|++.+.. .++.++++|..+|+.+.+...+.||+|++.
T Consensus 124 p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~FDlVF~~- 202 (296)
T PLN03075 124 PTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKEYDVVFLA- 202 (296)
T ss_pred CCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccccCCcCEEEEe-
Confidence 78999999997754 4444433 3 67899999999999999999964 788789999999998864335789999999
Q ss_pred ccCCC--CCHHHHHHHHHHhcCCCcEEEEEe
Q 016921 235 SGEHM--PDKSKFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 235 ~l~~~--~~~~~~l~~~~r~LkpgG~l~~~~ 263 (380)
+++++ .++.++++++++.|+|||.+++..
T Consensus 203 ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~ 233 (296)
T PLN03075 203 ALVGMDKEEKVKVIEHLGKHMAPGALLMLRS 233 (296)
T ss_pred cccccccccHHHHHHHHHHhcCCCcEEEEec
Confidence 88888 689999999999999999999975
No 63
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=99.62 E-value=2.6e-14 Score=125.84 Aligned_cols=141 Identities=18% Similarity=0.196 Sum_probs=104.5
Q ss_pred CCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHc-----------CCCCCeEEEEcCCCCCCCC-CCC
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAAR-----------GLADKVSFQVGDALQQPFP-DGQ 226 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~-----------~~~~~v~~~~~d~~~~~~~-~~~ 226 (380)
+.+|||+|||.|..+..||++ |.+|+|+|+|+.+++.+.+..... .-..+++++++|+.+++.. .+.
T Consensus 35 ~~rvLd~GCG~G~da~~LA~~-G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~ 113 (213)
T TIGR03840 35 GARVFVPLCGKSLDLAWLAEQ-GHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAADLGP 113 (213)
T ss_pred CCeEEEeCCCchhHHHHHHhC-CCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCcccCCC
Confidence 789999999999999999987 999999999999999764322100 0124689999999887632 467
Q ss_pred ccEEEeccccCCCCC--HHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHHHHHH
Q 016921 227 FDLVWSMESGEHMPD--KSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVK 304 (380)
Q Consensus 227 fD~V~~~~~l~~~~~--~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (380)
||.|+-..+++|++. ...+++.+.++|||||++++..+....... .+-+...+++++.+
T Consensus 114 fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~~~~~~~~~~-------------------~gpp~~~~~~eL~~ 174 (213)
T TIGR03840 114 VDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLITLDYDQSEM-------------------AGPPFSVSPAEVEA 174 (213)
T ss_pred cCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEEEEEcCCCCC-------------------CCcCCCCCHHHHHH
Confidence 999999988899953 467999999999999987777654322110 01112368899999
Q ss_pred HHHhCCCcEEEEEecC
Q 016921 305 LLQSLSLEDIKAEDWS 320 (380)
Q Consensus 305 ll~~aGf~~v~~~~~~ 320 (380)
++.. +|++...+...
T Consensus 175 ~f~~-~~~i~~~~~~~ 189 (213)
T TIGR03840 175 LYGG-HYEIELLESRD 189 (213)
T ss_pred HhcC-CceEEEEeecc
Confidence 8863 57766665444
No 64
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=99.62 E-value=9.6e-15 Score=123.23 Aligned_cols=148 Identities=23% Similarity=0.309 Sum_probs=110.4
Q ss_pred CCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC--CCCCCCccEEEeccc
Q 016921 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ--PFPDGQFDLVWSMES 235 (380)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~fD~V~~~~~ 235 (380)
++.+|||+|||.|.+...|.+..+....|+|++++.+..+.+ ..+.++++|+++- .|++++||.|++..+
T Consensus 13 pgsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~~v~~cv~--------rGv~Viq~Dld~gL~~f~d~sFD~VIlsqt 84 (193)
T PF07021_consen 13 PGSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDPDNVAACVA--------RGVSVIQGDLDEGLADFPDQSFDYVILSQT 84 (193)
T ss_pred CCCEEEecCCCchHHHHHHHHhcCCeEEEEecCHHHHHHHHH--------cCCCEEECCHHHhHhhCCCCCccEEehHhH
Confidence 489999999999999999988768999999999998877654 3478999999873 488999999999999
Q ss_pred cCCCCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchHHHHHHHH-------HhhccC-CC--CCCCHHHHHHH
Q 016921 236 GEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKK-------ICDAYY-LP--AWCSTADYVKL 305 (380)
Q Consensus 236 l~~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~-~~--~~~~~~~~~~l 305 (380)
|+++.++..+++++.|+ |...+++-. +...+.....-.+.. ....|+ .| ++.|..+++++
T Consensus 85 LQ~~~~P~~vL~EmlRV---gr~~IVsFP-------NFg~W~~R~~l~~~GrmPvt~~lPy~WYdTPNih~~Ti~DFe~l 154 (193)
T PF07021_consen 85 LQAVRRPDEVLEEMLRV---GRRAIVSFP-------NFGHWRNRLQLLLRGRMPVTKALPYEWYDTPNIHLCTIKDFEDL 154 (193)
T ss_pred HHhHhHHHHHHHHHHHh---cCeEEEEec-------ChHHHHHHHHHHhcCCCCCCCCCCCcccCCCCcccccHHHHHHH
Confidence 99999999999999877 556666552 221111111111000 001111 11 36899999999
Q ss_pred HHhCCCcEEEEEecCCCc
Q 016921 306 LQSLSLEDIKAEDWSQNV 323 (380)
Q Consensus 306 l~~aGf~~v~~~~~~~~~ 323 (380)
.++.|+++++...+....
T Consensus 155 c~~~~i~I~~~~~~~~~~ 172 (193)
T PF07021_consen 155 CRELGIRIEERVFLDGGR 172 (193)
T ss_pred HHHCCCEEEEEEEEcCCC
Confidence 999999999887766544
No 65
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=99.61 E-value=6.5e-15 Score=134.23 Aligned_cols=106 Identities=21% Similarity=0.340 Sum_probs=86.4
Q ss_pred CCCEEEEECCCcCh----HHHHHHHHc------CCEEEEEeCCHHHHHHHHHHHH----HcCC-----------------
Q 016921 158 RPKNVVDVGCGIGG----SSRYLAKKF------GAKCQGITLSPVQAQRANALAA----ARGL----------------- 206 (380)
Q Consensus 158 ~~~~vLDiGcGtG~----~~~~l~~~~------~~~v~giD~s~~~~~~a~~~~~----~~~~----------------- 206 (380)
++.+|+|+|||||. ++..+++.. +.+|+|+|+|+.|++.|++... ..++
T Consensus 99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~ 178 (264)
T smart00138 99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYR 178 (264)
T ss_pred CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEE
Confidence 36899999999997 455565543 3589999999999999997531 0111
Q ss_pred -----CCCeEEEEcCCCCCCCCCCCccEEEeccccCCCCC--HHHHHHHHHHhcCCCcEEEEEe
Q 016921 207 -----ADKVSFQVGDALQQPFPDGQFDLVWSMESGEHMPD--KSKFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 207 -----~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~~--~~~~l~~~~r~LkpgG~l~~~~ 263 (380)
..+|.|.+.|+.+.+++.++||+|+|.++++|+++ ..+++++++++|+|||+|++..
T Consensus 179 v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~lg~ 242 (264)
T smart00138 179 VKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLFLGH 242 (264)
T ss_pred EChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 14789999999998777889999999999999964 4589999999999999999975
No 66
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.61 E-value=2.4e-14 Score=115.29 Aligned_cols=111 Identities=20% Similarity=0.191 Sum_probs=89.9
Q ss_pred HHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCC-CC
Q 016921 144 ETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ-QP 221 (380)
Q Consensus 144 ~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~ 221 (380)
.++..+.+.. +.+|||+|||+|.++..+++.. +.+|+++|+++.+++.+++++...+.. ++.++..|+.. .+
T Consensus 10 ~~~~~~~~~~-----~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~ 83 (124)
T TIGR02469 10 LTLSKLRLRP-----GDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVS-NIVIVEGDAPEALE 83 (124)
T ss_pred HHHHHcCCCC-----CCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCC-ceEEEeccccccCh
Confidence 3445554443 7799999999999999999986 579999999999999999998877664 68999998765 23
Q ss_pred CCCCCccEEEeccccCCCCCHHHHHHHHHHhcCCCcEEEEEe
Q 016921 222 FPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 222 ~~~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~ 263 (380)
...++||.|++..... ...++++++++.|||||.+++..
T Consensus 84 ~~~~~~D~v~~~~~~~---~~~~~l~~~~~~Lk~gG~li~~~ 122 (124)
T TIGR02469 84 DSLPEPDRVFIGGSGG---LLQEILEAIWRRLRPGGRIVLNA 122 (124)
T ss_pred hhcCCCCEEEECCcch---hHHHHHHHHHHHcCCCCEEEEEe
Confidence 3346899999876543 34689999999999999999864
No 67
>PRK06922 hypothetical protein; Provisional
Probab=99.61 E-value=1.2e-14 Score=143.82 Aligned_cols=105 Identities=21% Similarity=0.217 Sum_probs=91.4
Q ss_pred CCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC--CCCCCccEEEeccc
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP--FPDGQFDLVWSMES 235 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--~~~~~fD~V~~~~~ 235 (380)
+.+|||||||+|..+..+++.. +.+|+|+|+|+.|++.|+++....+ .++.++++|+.+++ +++++||+|+++.+
T Consensus 419 g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g--~~ie~I~gDa~dLp~~fedeSFDvVVsn~v 496 (677)
T PRK06922 419 GDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEG--RSWNVIKGDAINLSSSFEKESVDTIVYSSI 496 (677)
T ss_pred CCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcC--CCeEEEEcchHhCccccCCCCEEEEEEchH
Confidence 7899999999999999998876 7899999999999999998875544 36888999998876 77899999999988
Q ss_pred cCCC-------------CCHHHHHHHHHHhcCCCcEEEEEecc
Q 016921 236 GEHM-------------PDKSKFVSELARVTAPAGTIIIVTWC 265 (380)
Q Consensus 236 l~~~-------------~~~~~~l~~~~r~LkpgG~l~~~~~~ 265 (380)
+|++ .+...++++++++|||||.+++.+..
T Consensus 497 LH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~v 539 (677)
T PRK06922 497 LHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDGI 539 (677)
T ss_pred HHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeCc
Confidence 8865 24578999999999999999998854
No 68
>PRK04266 fibrillarin; Provisional
Probab=99.60 E-value=4.3e-14 Score=125.44 Aligned_cols=135 Identities=12% Similarity=0.199 Sum_probs=96.9
Q ss_pred CCCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC----CCCCCCccEEEe
Q 016921 158 RPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ----PFPDGQFDLVWS 232 (380)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~----~~~~~~fD~V~~ 232 (380)
++.+|||+|||+|.++..+++.. ...|+|+|+++.|++.+.+++... .++.++.+|+... ++ .++||+|++
T Consensus 72 ~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~---~nv~~i~~D~~~~~~~~~l-~~~~D~i~~ 147 (226)
T PRK04266 72 KGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEER---KNIIPILADARKPERYAHV-VEKVDVIYQ 147 (226)
T ss_pred CCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhc---CCcEEEECCCCCcchhhhc-cccCCEEEE
Confidence 48999999999999999999976 468999999999999887776543 4789999998752 22 256999985
Q ss_pred ccccCCCCCH---HHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHHHHHHHHHhC
Q 016921 233 MESGEHMPDK---SKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSL 309 (380)
Q Consensus 233 ~~~l~~~~~~---~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~a 309 (380)
. +.++ ..+++++.++|||||.++++... ... ...... .. ..++..++++++
T Consensus 148 d-----~~~p~~~~~~L~~~~r~LKpGG~lvI~v~~-~~~---d~~~~~--~~---------------~~~~~~~~l~~a 201 (226)
T PRK04266 148 D-----VAQPNQAEIAIDNAEFFLKDGGYLLLAIKA-RSI---DVTKDP--KE---------------IFKEEIRKLEEG 201 (226)
T ss_pred C-----CCChhHHHHHHHHHHHhcCCCcEEEEEEec-ccc---cCcCCH--HH---------------HHHHHHHHHHHc
Confidence 3 2333 34689999999999999995211 000 000000 00 013445999999
Q ss_pred CCcEEEEEecCCC
Q 016921 310 SLEDIKAEDWSQN 322 (380)
Q Consensus 310 Gf~~v~~~~~~~~ 322 (380)
||+.++..+....
T Consensus 202 GF~~i~~~~l~p~ 214 (226)
T PRK04266 202 GFEILEVVDLEPY 214 (226)
T ss_pred CCeEEEEEcCCCC
Confidence 9999998876543
No 69
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=99.60 E-value=1.2e-13 Score=122.11 Aligned_cols=138 Identities=20% Similarity=0.211 Sum_probs=103.1
Q ss_pred CCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCC--------------CCCeEEEEcCCCCCCCC-
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGL--------------ADKVSFQVGDALQQPFP- 223 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~--------------~~~v~~~~~d~~~~~~~- 223 (380)
+.+|||+|||.|..+..||++ |.+|+|+|+|+..++.+.+ +.++ ..+|++.++|+.+++..
T Consensus 38 ~~rvL~~gCG~G~da~~LA~~-G~~V~avD~s~~Ai~~~~~---~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~ 113 (218)
T PRK13255 38 GSRVLVPLCGKSLDMLWLAEQ-GHEVLGVELSELAVEQFFA---ENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAAD 113 (218)
T ss_pred CCeEEEeCCCChHhHHHHHhC-CCeEEEEccCHHHHHHHHH---HcCCCccccccccccccccCceEEEECcccCCCccc
Confidence 789999999999999999987 9999999999999997643 2222 25789999999987532
Q ss_pred CCCccEEEeccccCCCC--CHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHHH
Q 016921 224 DGQFDLVWSMESGEHMP--DKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTAD 301 (380)
Q Consensus 224 ~~~fD~V~~~~~l~~~~--~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (380)
...||.|+-..+++|++ ....+++.+.++|+|||.+++..+....... .+-+...+.++
T Consensus 114 ~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l~~~~~~~~~~-------------------~gPp~~~~~~e 174 (218)
T PRK13255 114 LADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLLVTLDYPQEEL-------------------AGPPFSVSDEE 174 (218)
T ss_pred CCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEEEEEEeCCccC-------------------CCCCCCCCHHH
Confidence 25899999999999995 3578999999999999976654443221100 01112468999
Q ss_pred HHHHHHhCCCcEEEEEecC
Q 016921 302 YVKLLQSLSLEDIKAEDWS 320 (380)
Q Consensus 302 ~~~ll~~aGf~~v~~~~~~ 320 (380)
+.+++.. +|++...+...
T Consensus 175 l~~~~~~-~~~i~~~~~~~ 192 (218)
T PRK13255 175 VEALYAG-CFEIELLERQD 192 (218)
T ss_pred HHHHhcC-CceEEEeeecc
Confidence 9999963 37777665443
No 70
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.60 E-value=7.4e-14 Score=122.22 Aligned_cols=129 Identities=13% Similarity=0.204 Sum_probs=101.6
Q ss_pred CCCEEEEECCCcChHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC-CCCCCCccEEEecc
Q 016921 158 RPKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ-PFPDGQFDLVWSME 234 (380)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~--~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~~~~fD~V~~~~ 234 (380)
++.+|||+|||+|.++..++... +.+|+++|+++.+++.+++++...++..++.++.+|+.+. +...+.||+|++..
T Consensus 40 ~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~~~~~D~V~~~~ 119 (198)
T PRK00377 40 KGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTINEKFDRIFIGG 119 (198)
T ss_pred CcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhcCCCCCEEEECC
Confidence 38999999999999999988764 4689999999999999999998888667899999998764 32246899999854
Q ss_pred ccCCCCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCcEE
Q 016921 235 SGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDI 314 (380)
Q Consensus 235 ~l~~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v 314 (380)
...+...+++.+.++|||||++++.... ..+..++...|+++|| .+
T Consensus 120 ---~~~~~~~~l~~~~~~LkpgG~lv~~~~~------------------------------~~~~~~~~~~l~~~g~-~~ 165 (198)
T PRK00377 120 ---GSEKLKEIISASWEIIKKGGRIVIDAIL------------------------------LETVNNALSALENIGF-NL 165 (198)
T ss_pred ---CcccHHHHHHHHHHHcCCCcEEEEEeec------------------------------HHHHHHHHHHHHHcCC-Ce
Confidence 2356788999999999999999874310 0124677788899999 44
Q ss_pred EEEecC
Q 016921 315 KAEDWS 320 (380)
Q Consensus 315 ~~~~~~ 320 (380)
++..+.
T Consensus 166 ~~~~~~ 171 (198)
T PRK00377 166 EITEVI 171 (198)
T ss_pred EEEEEe
Confidence 544443
No 71
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=99.59 E-value=3.6e-14 Score=130.45 Aligned_cols=94 Identities=30% Similarity=0.431 Sum_probs=79.9
Q ss_pred CCEEEEECCCcChHHHHHHHHc----CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEEecc
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKF----GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSME 234 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~----~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~ 234 (380)
..+|||+|||+|.++..+++.. +..++|+|+|+.+++.|+++. +++.+.++|+.++|+++++||+|++..
T Consensus 86 ~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~------~~~~~~~~d~~~lp~~~~sfD~I~~~~ 159 (272)
T PRK11088 86 ATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY------PQVTFCVASSHRLPFADQSLDAIIRIY 159 (272)
T ss_pred CCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC------CCCeEEEeecccCCCcCCceeEEEEec
Confidence 6789999999999999998764 247999999999999987643 468999999999999999999999865
Q ss_pred ccCCCCCHHHHHHHHHHhcCCCcEEEEEecc
Q 016921 235 SGEHMPDKSKFVSELARVTAPAGTIIIVTWC 265 (380)
Q Consensus 235 ~l~~~~~~~~~l~~~~r~LkpgG~l~~~~~~ 265 (380)
.- ..++++.|+|||||++++....
T Consensus 160 ~~-------~~~~e~~rvLkpgG~li~~~p~ 183 (272)
T PRK11088 160 AP-------CKAEELARVVKPGGIVITVTPG 183 (272)
T ss_pred CC-------CCHHHHHhhccCCCEEEEEeCC
Confidence 42 2468899999999999998743
No 72
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.59 E-value=1.1e-14 Score=127.71 Aligned_cols=104 Identities=24% Similarity=0.303 Sum_probs=88.8
Q ss_pred CCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCC-CCCC--CCCCCccEEEecc
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDA-LQQP--FPDGQFDLVWSME 234 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~-~~~~--~~~~~fD~V~~~~ 234 (380)
+.+|||||||+|..+..+++.. +.+|+|+|+|+.+++.+++++...++ .++.++++|+ +.++ +++++||+|++.+
T Consensus 41 ~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~-~~v~~~~~d~~~~l~~~~~~~~~D~V~~~~ 119 (202)
T PRK00121 41 APIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGL-TNLRLLCGDAVEVLLDMFPDGSLDRIYLNF 119 (202)
T ss_pred CCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCC-CCEEEEecCHHHHHHHHcCccccceEEEEC
Confidence 7899999999999999999876 57899999999999999999988776 5799999999 6665 6678999999876
Q ss_pred ccCCCC--------CHHHHHHHHHHhcCCCcEEEEEe
Q 016921 235 SGEHMP--------DKSKFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 235 ~l~~~~--------~~~~~l~~~~r~LkpgG~l~~~~ 263 (380)
...+.. ....+++++.++|||||.+++..
T Consensus 120 ~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~ 156 (202)
T PRK00121 120 PDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFAT 156 (202)
T ss_pred CCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEc
Confidence 543321 13678999999999999999975
No 73
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.58 E-value=4.9e-14 Score=124.52 Aligned_cols=112 Identities=21% Similarity=0.326 Sum_probs=92.3
Q ss_pred HHHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCC
Q 016921 140 RMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDA 217 (380)
Q Consensus 140 ~~~~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~--~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~ 217 (380)
.+...++..+.+.+ +.+|||||||+|..+..+++.. +.+|+++|+++.+++.+++++...+. .+++++.+|+
T Consensus 63 ~~~~~~~~~l~~~~-----g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~-~~v~~~~gd~ 136 (212)
T PRK13942 63 HMVAIMCELLDLKE-----GMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGY-DNVEVIVGDG 136 (212)
T ss_pred HHHHHHHHHcCCCC-----cCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCC-CCeEEEECCc
Confidence 35566666666554 8999999999999999998875 36999999999999999999988776 5799999998
Q ss_pred CCCCCCCCCccEEEeccccCCCCCHHHHHHHHHHhcCCCcEEEEEe
Q 016921 218 LQQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 218 ~~~~~~~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~ 263 (380)
.....+.++||+|++.....+++ +.+.+.|||||++++..
T Consensus 137 ~~~~~~~~~fD~I~~~~~~~~~~------~~l~~~LkpgG~lvi~~ 176 (212)
T PRK13942 137 TLGYEENAPYDRIYVTAAGPDIP------KPLIEQLKDGGIMVIPV 176 (212)
T ss_pred ccCCCcCCCcCEEEECCCcccch------HHHHHhhCCCcEEEEEE
Confidence 87655668999999987765543 46778999999998854
No 74
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=99.57 E-value=3.8e-15 Score=126.96 Aligned_cols=154 Identities=23% Similarity=0.294 Sum_probs=112.5
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC
Q 016921 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ 220 (380)
Q Consensus 141 ~~~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~ 220 (380)
++.++|..+.... -.++||+|||||..+..+... ..+++|+|+|.+|++.|.++ ++.+ ...++++..+
T Consensus 113 ~l~emI~~~~~g~-----F~~~lDLGCGTGL~G~~lR~~-a~~ltGvDiS~nMl~kA~eK----g~YD--~L~~Aea~~F 180 (287)
T COG4976 113 LLAEMIGKADLGP-----FRRMLDLGCGTGLTGEALRDM-ADRLTGVDISENMLAKAHEK----GLYD--TLYVAEAVLF 180 (287)
T ss_pred HHHHHHHhccCCc-----cceeeecccCcCcccHhHHHH-HhhccCCchhHHHHHHHHhc----cchH--HHHHHHHHHH
Confidence 6677777776543 689999999999999999876 67899999999999998763 3322 2344444322
Q ss_pred -C-CCCCCccEEEeccccCCCCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCC
Q 016921 221 -P-FPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCS 298 (380)
Q Consensus 221 -~-~~~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (380)
+ ..++.||+|++..++.++.+.+.++--+...|+|||.+.++.-...... .-.+.+ ...+ -.+
T Consensus 181 l~~~~~er~DLi~AaDVl~YlG~Le~~~~~aa~~L~~gGlfaFSvE~l~~~~--~f~l~p---------s~Ry----AH~ 245 (287)
T COG4976 181 LEDLTQERFDLIVAADVLPYLGALEGLFAGAAGLLAPGGLFAFSVETLPDDG--GFVLGP---------SQRY----AHS 245 (287)
T ss_pred hhhccCCcccchhhhhHHHhhcchhhHHHHHHHhcCCCceEEEEecccCCCC--Ceecch---------hhhh----ccc
Confidence 1 3468899999999999999999999999999999999999753222110 000010 0011 135
Q ss_pred HHHHHHHHHhCCCcEEEEEecCC
Q 016921 299 TADYVKLLQSLSLEDIKAEDWSQ 321 (380)
Q Consensus 299 ~~~~~~ll~~aGf~~v~~~~~~~ 321 (380)
..-++.+++..||++|++++.+.
T Consensus 246 ~~YVr~~l~~~Gl~~i~~~~tti 268 (287)
T COG4976 246 ESYVRALLAASGLEVIAIEDTTI 268 (287)
T ss_pred hHHHHHHHHhcCceEEEeecccc
Confidence 67789999999999999876653
No 75
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.56 E-value=9.8e-14 Score=123.08 Aligned_cols=111 Identities=22% Similarity=0.295 Sum_probs=91.1
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCC
Q 016921 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDAL 218 (380)
Q Consensus 141 ~~~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~--~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~ 218 (380)
.+..+++.+.+.+ +.+|||||||+|.++..+++.. ..+|+++|+++.+++.|++++...++ .+++++.+|+.
T Consensus 65 ~~~~~~~~l~~~~-----~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~-~~v~~~~~d~~ 138 (215)
T TIGR00080 65 MVAMMTELLELKP-----GMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGL-DNVIVIVGDGT 138 (215)
T ss_pred HHHHHHHHhCCCC-----cCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCC-CCeEEEECCcc
Confidence 4556666666554 8999999999999999999875 34699999999999999999998887 58999999997
Q ss_pred CCCCCCCCccEEEeccccCCCCCHHHHHHHHHHhcCCCcEEEEEe
Q 016921 219 QQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 219 ~~~~~~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~ 263 (380)
......++||+|++.....++ ...+.+.|+|||++++..
T Consensus 139 ~~~~~~~~fD~Ii~~~~~~~~------~~~~~~~L~~gG~lv~~~ 177 (215)
T TIGR00080 139 QGWEPLAPYDRIYVTAAGPKI------PEALIDQLKEGGILVMPV 177 (215)
T ss_pred cCCcccCCCCEEEEcCCcccc------cHHHHHhcCcCcEEEEEE
Confidence 754345789999988766554 346788999999998854
No 76
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.55 E-value=3.1e-13 Score=122.84 Aligned_cols=139 Identities=24% Similarity=0.386 Sum_probs=106.2
Q ss_pred HHHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCC
Q 016921 140 RMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDAL 218 (380)
Q Consensus 140 ~~~~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~ 218 (380)
.++..++..+. . .+.+|||+|||+|.++..+++.. +.+++|+|+++.+++.+++++...++. ++.++.+|+.
T Consensus 75 ~l~~~~l~~~~-~-----~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~-~~~~~~~d~~ 147 (251)
T TIGR03534 75 ELVEAALERLK-K-----GPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLD-NVTFLQSDWF 147 (251)
T ss_pred HHHHHHHHhcc-c-----CCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCC-eEEEEECchh
Confidence 34555555443 1 25689999999999999999876 679999999999999999999887774 7999999987
Q ss_pred CCCCCCCCccEEEeccccCC------CC--------------------CHHHHHHHHHHhcCCCcEEEEEeccCCCCCCC
Q 016921 219 QQPFPDGQFDLVWSMESGEH------MP--------------------DKSKFVSELARVTAPAGTIIIVTWCHRDLAPS 272 (380)
Q Consensus 219 ~~~~~~~~fD~V~~~~~l~~------~~--------------------~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~ 272 (380)
+ ++++++||+|+++--... +. ....+++++.++|+|||.+++...
T Consensus 148 ~-~~~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~-------- 218 (251)
T TIGR03534 148 E-PLPGGKFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIG-------- 218 (251)
T ss_pred c-cCcCCceeEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEEC--------
Confidence 6 456789999998532211 10 123678999999999999988531
Q ss_pred ccccchHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCcEEEEE
Q 016921 273 EESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAE 317 (380)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v~~~ 317 (380)
+...+++.++|+++||+.+++.
T Consensus 219 -----------------------~~~~~~~~~~l~~~gf~~v~~~ 240 (251)
T TIGR03534 219 -----------------------YDQGEAVRALFEAAGFADVETR 240 (251)
T ss_pred -----------------------ccHHHHHHHHHHhCCCCceEEE
Confidence 1234678899999999987753
No 77
>PRK14968 putative methyltransferase; Provisional
Probab=99.55 E-value=2.5e-13 Score=117.78 Aligned_cols=129 Identities=21% Similarity=0.349 Sum_probs=101.5
Q ss_pred CCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCC-eEEEEcCCCCCCCCCCCccEEEecccc
Q 016921 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADK-VSFQVGDALQQPFPDGQFDLVWSMESG 236 (380)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~-v~~~~~d~~~~~~~~~~fD~V~~~~~l 236 (380)
++.+|||+|||+|.++..+++. +.+++|+|+|+.+++.+++++...++..+ +.+++.|+.+. +.+++||+|+++..+
T Consensus 23 ~~~~vLd~G~G~G~~~~~l~~~-~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~d~vi~n~p~ 100 (188)
T PRK14968 23 KGDRVLEVGTGSGIVAIVAAKN-GKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEP-FRGDKFDVILFNPPY 100 (188)
T ss_pred CCCEEEEEccccCHHHHHHHhh-cceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEecccccc-ccccCceEEEECCCc
Confidence 3789999999999999999988 89999999999999999999887776433 88999998763 445689999986544
Q ss_pred CCC---------------------CCHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCC
Q 016921 237 EHM---------------------PDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPA 295 (380)
Q Consensus 237 ~~~---------------------~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (380)
.+. .....+++++.++|||||.+++....
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~------------------------------ 150 (188)
T PRK14968 101 LPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSS------------------------------ 150 (188)
T ss_pred CCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEcc------------------------------
Confidence 321 11356899999999999998886521
Q ss_pred CCCHHHHHHHHHhCCCcEEEEEe
Q 016921 296 WCSTADYVKLLQSLSLEDIKAED 318 (380)
Q Consensus 296 ~~~~~~~~~ll~~aGf~~v~~~~ 318 (380)
....+++.++++++||+++.+..
T Consensus 151 ~~~~~~l~~~~~~~g~~~~~~~~ 173 (188)
T PRK14968 151 LTGEDEVLEYLEKLGFEAEVVAE 173 (188)
T ss_pred cCCHHHHHHHHHHCCCeeeeeee
Confidence 12346788999999998776543
No 78
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=99.54 E-value=2e-13 Score=112.54 Aligned_cols=126 Identities=25% Similarity=0.419 Sum_probs=106.7
Q ss_pred CEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEEeccccCC
Q 016921 160 KNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEH 238 (380)
Q Consensus 160 ~~vLDiGcGtG~~~~~l~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~ 238 (380)
.+|||+|||.|.+...|++.. ...++|+|.|+..++.|+..+...+.++.|+|.+.|+.+..+..++||+|+--+++..
T Consensus 69 ~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~~~~~~qfdlvlDKGT~DA 148 (227)
T KOG1271|consen 69 DRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDPDFLSGQFDLVLDKGTLDA 148 (227)
T ss_pred cceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCCcccccceeEEeecCceee
Confidence 399999999999999999985 4569999999999999999999999988899999999997777889999987666655
Q ss_pred C---CC-----HHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCC
Q 016921 239 M---PD-----KSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLS 310 (380)
Q Consensus 239 ~---~~-----~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aG 310 (380)
+ ++ +...+..+.+.|+|||+++|..-. +|.+++.+.++..|
T Consensus 149 isLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSCN-------------------------------~T~dELv~~f~~~~ 197 (227)
T KOG1271|consen 149 ISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSCN-------------------------------FTKDELVEEFENFN 197 (227)
T ss_pred eecCCCCcccceeeehhhHhhccCCCcEEEEEecC-------------------------------ccHHHHHHHHhcCC
Confidence 4 22 245788899999999999997521 57889999999999
Q ss_pred CcEEEE
Q 016921 311 LEDIKA 316 (380)
Q Consensus 311 f~~v~~ 316 (380)
|+....
T Consensus 198 f~~~~t 203 (227)
T KOG1271|consen 198 FEYLST 203 (227)
T ss_pred eEEEEe
Confidence 887654
No 79
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=99.54 E-value=1.5e-13 Score=129.63 Aligned_cols=115 Identities=21% Similarity=0.245 Sum_probs=92.3
Q ss_pred HHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC
Q 016921 142 IEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP 221 (380)
Q Consensus 142 ~~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~ 221 (380)
...++.....+ ++.+|||+|||+|.++..++.. +..++|+|+++.|+..++++++..++.. +.+.++|+.+++
T Consensus 171 a~~~~~l~~~~-----~g~~vLDp~cGtG~~lieaa~~-~~~v~g~Di~~~~~~~a~~nl~~~g~~~-i~~~~~D~~~l~ 243 (329)
T TIGR01177 171 ARAMVNLARVT-----EGDRVLDPFCGTGGFLIEAGLM-GAKVIGCDIDWKMVAGARINLEHYGIED-FFVKRGDATKLP 243 (329)
T ss_pred HHHHHHHhCCC-----CcCEEEECCCCCCHHHHHHHHh-CCeEEEEcCCHHHHHHHHHHHHHhCCCC-CeEEecchhcCC
Confidence 33444444444 3889999999999999887764 8999999999999999999998888764 899999999998
Q ss_pred CCCCCccEEEeccccC-------C-CCC-HHHHHHHHHHhcCCCcEEEEEe
Q 016921 222 FPDGQFDLVWSMESGE-------H-MPD-KSKFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 222 ~~~~~fD~V~~~~~l~-------~-~~~-~~~~l~~~~r~LkpgG~l~~~~ 263 (380)
+++++||+|++.--.. + ..+ ...+++++.++|||||++++..
T Consensus 244 ~~~~~~D~Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~ 294 (329)
T TIGR01177 244 LSSESVDAIATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAV 294 (329)
T ss_pred cccCCCCEEEECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEE
Confidence 8788999999852111 1 111 4789999999999999998875
No 80
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.54 E-value=5.2e-14 Score=122.70 Aligned_cols=104 Identities=27% Similarity=0.348 Sum_probs=88.0
Q ss_pred CCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC---CCCCCccEEEecc
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP---FPDGQFDLVWSME 234 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~---~~~~~fD~V~~~~ 234 (380)
..+|||||||+|.++..+++.. +..|+|+|+++.+++.|++++...++. ++.++++|+.+++ ++++++|.|++.+
T Consensus 17 ~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~-ni~~i~~d~~~~~~~~~~~~~~d~v~~~~ 95 (194)
T TIGR00091 17 APLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLK-NLHVLCGDANELLDKFFPDGSLSKVFLNF 95 (194)
T ss_pred CceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCC-CEEEEccCHHHHHHhhCCCCceeEEEEEC
Confidence 5689999999999999999987 679999999999999999998888774 8999999997653 4567899999876
Q ss_pred ccCCCCCH--------HHHHHHHHHhcCCCcEEEEEe
Q 016921 235 SGEHMPDK--------SKFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 235 ~l~~~~~~--------~~~l~~~~r~LkpgG~l~~~~ 263 (380)
...+.... ..++++++++|||||.|++..
T Consensus 96 pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~t 132 (194)
T TIGR00091 96 PDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKT 132 (194)
T ss_pred CCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEe
Confidence 54443221 578999999999999999876
No 81
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.53 E-value=3.5e-13 Score=122.22 Aligned_cols=120 Identities=21% Similarity=0.259 Sum_probs=92.1
Q ss_pred CCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEEeccccC
Q 016921 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGE 237 (380)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~ 237 (380)
++.+|||+|||+|.++..+++....+|+|+|+|+.+++.|++++...++..++.+..+| .+||+|+++....
T Consensus 119 ~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l~~A~~n~~~~~~~~~~~~~~~~--------~~fD~Vvani~~~ 190 (250)
T PRK00517 119 PGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAARENAELNGVELNVYLPQGD--------LKADVIVANILAN 190 (250)
T ss_pred CCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEccCC--------CCcCEEEEcCcHH
Confidence 38899999999999998877653346999999999999999999887764444433322 2799999864322
Q ss_pred CCCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCcEEEEE
Q 016921 238 HMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAE 317 (380)
Q Consensus 238 ~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v~~~ 317 (380)
....++.++.++|||||.+++..+.. ...+++.+.+++.||+++...
T Consensus 191 ---~~~~l~~~~~~~LkpgG~lilsgi~~------------------------------~~~~~v~~~l~~~Gf~~~~~~ 237 (250)
T PRK00517 191 ---PLLELAPDLARLLKPGGRLILSGILE------------------------------EQADEVLEAYEEAGFTLDEVL 237 (250)
T ss_pred ---HHHHHHHHHHHhcCCCcEEEEEECcH------------------------------hhHHHHHHHHHHCCCEEEEEE
Confidence 24678899999999999999986421 124678889999999988765
Q ss_pred e
Q 016921 318 D 318 (380)
Q Consensus 318 ~ 318 (380)
.
T Consensus 238 ~ 238 (250)
T PRK00517 238 E 238 (250)
T ss_pred E
Confidence 4
No 82
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=99.52 E-value=3.6e-13 Score=124.56 Aligned_cols=102 Identities=26% Similarity=0.349 Sum_probs=83.6
Q ss_pred CCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEEeccccC
Q 016921 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGE 237 (380)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~ 237 (380)
++.+|||+|||+|.++..+++....+|+|+|+++.+++.|++++...++..++.+...+... ..+++||+|+++....
T Consensus 159 ~g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~--~~~~~fDlVvan~~~~ 236 (288)
T TIGR00406 159 KDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQ--PIEGKADVIVANILAE 236 (288)
T ss_pred CCCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEeccccc--ccCCCceEEEEecCHH
Confidence 37899999999999998888753458999999999999999999888877677777776433 3357899999875432
Q ss_pred CCCCHHHHHHHHHHhcCCCcEEEEEec
Q 016921 238 HMPDKSKFVSELARVTAPAGTIIIVTW 264 (380)
Q Consensus 238 ~~~~~~~~l~~~~r~LkpgG~l~~~~~ 264 (380)
....++.++.++|||||+++++.+
T Consensus 237 ---~l~~ll~~~~~~LkpgG~li~sgi 260 (288)
T TIGR00406 237 ---VIKELYPQFSRLVKPGGWLILSGI 260 (288)
T ss_pred ---HHHHHHHHHHHHcCCCcEEEEEeC
Confidence 346789999999999999999864
No 83
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=99.50 E-value=1.5e-12 Score=121.18 Aligned_cols=105 Identities=18% Similarity=0.190 Sum_probs=81.9
Q ss_pred CCEEEEECCCcChHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCC-CCCCCC----CccEEE
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ-QPFPDG----QFDLVW 231 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~--~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~~~~----~fD~V~ 231 (380)
+.+|||+|||+|..+..+++.. +.+|+++|+|++|++.+++++.......++.++++|+.+ ++++.. ...+++
T Consensus 64 ~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~~~~~~~~~~ 143 (301)
T TIGR03438 64 GCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPPEPAAGRRLGFF 143 (301)
T ss_pred CCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhcccccCCeEEEE
Confidence 6789999999999999999886 579999999999999999987654322357788999976 333322 233444
Q ss_pred eccccCCCCC--HHHHHHHHHHhcCCCcEEEEEe
Q 016921 232 SMESGEHMPD--KSKFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 232 ~~~~l~~~~~--~~~~l~~~~r~LkpgG~l~~~~ 263 (380)
+..++++++. ...++++++++|+|||.+++..
T Consensus 144 ~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~lig~ 177 (301)
T TIGR03438 144 PGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLIGV 177 (301)
T ss_pred ecccccCCCHHHHHHHHHHHHHhcCCCCEEEEec
Confidence 5567787753 4679999999999999999754
No 84
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=99.50 E-value=5.4e-14 Score=121.21 Aligned_cols=171 Identities=17% Similarity=0.249 Sum_probs=118.9
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHc-C--CEEEEEeCCHHHHHHHHHHHHHcCCCCCe
Q 016921 134 HRAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF-G--AKCQGITLSPVQAQRANALAAARGLADKV 210 (380)
Q Consensus 134 ~~~~~~~~~~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~-~--~~v~giD~s~~~~~~a~~~~~~~~~~~~v 210 (380)
-|.|..+-...++.... ....+|||||||.|.....+.+.. . ..|++.|.|+..++..+++..-. +.++
T Consensus 53 dR~wL~~Efpel~~~~~------~~~~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~--e~~~ 124 (264)
T KOG2361|consen 53 DRNWLLREFPELLPVDE------KSAETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYD--ESRV 124 (264)
T ss_pred hhHHHHHhhHHhhCccc------cChhhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccc--hhhh
Confidence 45665555555543322 123489999999999999998865 3 68999999999999988765432 2456
Q ss_pred EEEEcCCCCC----CCCCCCccEEEeccccCCCC--CHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchHHHHHH
Q 016921 211 SFQVGDALQQ----PFPDGQFDLVWSMESGEHMP--DKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELL 284 (380)
Q Consensus 211 ~~~~~d~~~~----~~~~~~fD~V~~~~~l~~~~--~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (380)
.-.+.|+... +.+.+++|+|++.++|..++ ....++.+++++|||||.|++-|++..+.....-.-. +.+
T Consensus 125 ~afv~Dlt~~~~~~~~~~~svD~it~IFvLSAi~pek~~~a~~nl~~llKPGG~llfrDYg~~DlaqlRF~~~----~~i 200 (264)
T KOG2361|consen 125 EAFVWDLTSPSLKEPPEEGSVDIITLIFVLSAIHPEKMQSVIKNLRTLLKPGGSLLFRDYGRYDLAQLRFKKG----QCI 200 (264)
T ss_pred cccceeccchhccCCCCcCccceEEEEEEEeccChHHHHHHHHHHHHHhCCCcEEEEeecccchHHHHhccCC----cee
Confidence 6666666542 45679999999999998884 3578999999999999999999986554321111000 001
Q ss_pred HH---HhhccCCCCCCCHHHHHHHHHhCCCcEEEE
Q 016921 285 KK---ICDAYYLPAWCSTADYVKLLQSLSLEDIKA 316 (380)
Q Consensus 285 ~~---~~~~~~~~~~~~~~~~~~ll~~aGf~~v~~ 316 (380)
.. ........-+++.+++.+++.++||..++.
T Consensus 201 ~~nfYVRgDGT~~YfF~~eeL~~~f~~agf~~~~~ 235 (264)
T KOG2361|consen 201 SENFYVRGDGTRAYFFTEEELDELFTKAGFEEVQL 235 (264)
T ss_pred ecceEEccCCceeeeccHHHHHHHHHhcccchhcc
Confidence 00 001111113689999999999999998764
No 85
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.50 E-value=9e-13 Score=112.43 Aligned_cols=103 Identities=31% Similarity=0.466 Sum_probs=86.1
Q ss_pred CCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEEeccccC
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGE 237 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~ 237 (380)
..+|||+|||+|.++..+++.. ..+|+++|+++.+++.+++++...++.. ++++..|..+. .++++||+|+++--++
T Consensus 32 ~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~-v~~~~~d~~~~-~~~~~fD~Iv~NPP~~ 109 (170)
T PF05175_consen 32 GGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLEN-VEVVQSDLFEA-LPDGKFDLIVSNPPFH 109 (170)
T ss_dssp TCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCTT-EEEEESSTTTT-CCTTCEEEEEE---SB
T ss_pred CCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCccc-ccccccccccc-ccccceeEEEEccchh
Confidence 7899999999999999999976 4479999999999999999999998865 99999998763 3478999999986654
Q ss_pred CCCC-----HHHHHHHHHHhcCCCcEEEEEe
Q 016921 238 HMPD-----KSKFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 238 ~~~~-----~~~~l~~~~r~LkpgG~l~~~~ 263 (380)
.-.+ ...+++++.+.|||||.+++..
T Consensus 110 ~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~ 140 (170)
T PF05175_consen 110 AGGDDGLDLLRDFIEQARRYLKPGGRLFLVI 140 (170)
T ss_dssp TTSHCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cccccchhhHHHHHHHHHHhccCCCEEEEEe
Confidence 4433 4788999999999999997754
No 86
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=99.49 E-value=4.1e-12 Score=117.43 Aligned_cols=104 Identities=20% Similarity=0.298 Sum_probs=85.2
Q ss_pred CCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEEec----
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSM---- 233 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~---- 233 (380)
..+|||+|||+|.++..++... +.+|+|+|+|+.+++.|++++...++..++.|+++|+.+ +++.++||+|+++
T Consensus 115 ~~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~-~~~~~~fDlIvsNPPyi 193 (284)
T TIGR00536 115 ILHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFE-PLAGQKIDIIVSNPPYI 193 (284)
T ss_pred CCEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhc-cCcCCCccEEEECCCCC
Confidence 3699999999999999999986 579999999999999999999888876679999999876 3444589999985
Q ss_pred ---------cccCCCC------------CHHHHHHHHHHhcCCCcEEEEEe
Q 016921 234 ---------ESGEHMP------------DKSKFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 234 ---------~~l~~~~------------~~~~~l~~~~r~LkpgG~l~~~~ 263 (380)
.++.|-+ ....+++++.+.|+|||++++..
T Consensus 194 ~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~ 244 (284)
T TIGR00536 194 DEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEI 244 (284)
T ss_pred CcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEE
Confidence 1222222 24578899999999999988754
No 87
>PTZ00146 fibrillarin; Provisional
Probab=99.49 E-value=1.6e-12 Score=117.89 Aligned_cols=136 Identities=12% Similarity=0.080 Sum_probs=95.3
Q ss_pred CCCCCEEEEECCCcChHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC---CCCCCCccEE
Q 016921 156 TKRPKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ---PFPDGQFDLV 230 (380)
Q Consensus 156 ~~~~~~vLDiGcGtG~~~~~l~~~~--~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~---~~~~~~fD~V 230 (380)
..++.+|||+|||+|.++..+++.. ...|+++|+++.+++...+.+... .|+.++..|+... ....++||+|
T Consensus 130 IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r---~NI~~I~~Da~~p~~y~~~~~~vDvV 206 (293)
T PTZ00146 130 IKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKR---PNIVPIIEDARYPQKYRMLVPMVDVI 206 (293)
T ss_pred cCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc---CCCEEEECCccChhhhhcccCCCCEE
Confidence 3568999999999999999999987 358999999998665544444322 4789999998652 2234689999
Q ss_pred EeccccCCCCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHHHH----HHHH
Q 016921 231 WSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADY----VKLL 306 (380)
Q Consensus 231 ~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~ll 306 (380)
++... ...+...++.++.++|||||.|++.. -.... ..-.+++++ .++|
T Consensus 207 ~~Dva--~pdq~~il~~na~r~LKpGG~~vI~i-ka~~i------------------------d~g~~pe~~f~~ev~~L 259 (293)
T PTZ00146 207 FADVA--QPDQARIVALNAQYFLKNGGHFIISI-KANCI------------------------DSTAKPEVVFASEVQKL 259 (293)
T ss_pred EEeCC--CcchHHHHHHHHHHhccCCCEEEEEE-ecccc------------------------ccCCCHHHHHHHHHHHH
Confidence 98763 22234456679999999999999942 11110 001122332 3789
Q ss_pred HhCCCcEEEEEecCC
Q 016921 307 QSLSLEDIKAEDWSQ 321 (380)
Q Consensus 307 ~~aGf~~v~~~~~~~ 321 (380)
+++||+.++..++..
T Consensus 260 ~~~GF~~~e~v~L~P 274 (293)
T PTZ00146 260 KKEGLKPKEQLTLEP 274 (293)
T ss_pred HHcCCceEEEEecCC
Confidence 999999988776543
No 88
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=99.48 E-value=2.9e-12 Score=118.17 Aligned_cols=104 Identities=23% Similarity=0.342 Sum_probs=84.5
Q ss_pred CCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEEecc---
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSME--- 234 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~--- 234 (380)
+.+|||+|||+|.++..+++.. +.+|+|+|+|+.+++.|++++...++..++.++++|+.+. +++++||+|+++=
T Consensus 122 ~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~-~~~~~fD~Iv~NPPy~ 200 (284)
T TIGR03533 122 VKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAA-LPGRKYDLIVSNPPYV 200 (284)
T ss_pred CCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhc-cCCCCccEEEECCCCC
Confidence 5789999999999999999876 6799999999999999999999888877899999998652 3456899999851
Q ss_pred ---ccC-------CCC------------CHHHHHHHHHHhcCCCcEEEEEe
Q 016921 235 ---SGE-------HMP------------DKSKFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 235 ---~l~-------~~~------------~~~~~l~~~~r~LkpgG~l~~~~ 263 (380)
.+. |-+ ....+++++.++|+|||++++..
T Consensus 201 ~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~ 251 (284)
T TIGR03533 201 DAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEV 251 (284)
T ss_pred CccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 111 111 12467889999999999988743
No 89
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=99.46 E-value=1e-12 Score=124.01 Aligned_cols=104 Identities=20% Similarity=0.233 Sum_probs=89.3
Q ss_pred CCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC--CCCCCCccEEEeccc
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ--PFPDGQFDLVWSMES 235 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~fD~V~~~~~ 235 (380)
+..+||||||+|.++..+|... +..++|+|+++.+++.+.+++...++ .++.++++|+..+ .++++++|.|++.+.
T Consensus 123 ~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL-~NV~~i~~DA~~ll~~~~~~s~D~I~lnFP 201 (390)
T PRK14121 123 EKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNL-KNLLIINYDARLLLELLPSNSVEKIFVHFP 201 (390)
T ss_pred CCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCC-CcEEEEECCHHHhhhhCCCCceeEEEEeCC
Confidence 6689999999999999999987 67999999999999999999988887 4799999999764 467899999998654
Q ss_pred cCCCCCH------HHHHHHHHHhcCCCcEEEEEe
Q 016921 236 GEHMPDK------SKFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 236 l~~~~~~------~~~l~~~~r~LkpgG~l~~~~ 263 (380)
..|...+ ..++++++|+|+|||.+.+.+
T Consensus 202 dPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~T 235 (390)
T PRK14121 202 VPWDKKPHRRVISEDFLNEALRVLKPGGTLELRT 235 (390)
T ss_pred CCccccchhhccHHHHHHHHHHHcCCCcEEEEEE
Confidence 4433222 589999999999999999976
No 90
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.46 E-value=1e-12 Score=124.52 Aligned_cols=104 Identities=22% Similarity=0.258 Sum_probs=85.7
Q ss_pred CCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCC--CCeEEEEcCCCCCCCCCCCccEEEeccc
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLA--DKVSFQVGDALQQPFPDGQFDLVWSMES 235 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~--~~v~~~~~d~~~~~~~~~~fD~V~~~~~ 235 (380)
+.+|||+|||+|.++..++++. +.+|+++|+|+.+++.++++++..+.. .++++...|.... ++.++||+|+++--
T Consensus 229 ~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~-~~~~~fDlIlsNPP 307 (378)
T PRK15001 229 EGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSG-VEPFRFNAVLCNPP 307 (378)
T ss_pred CCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEcccccc-CCCCCEEEEEECcC
Confidence 5699999999999999999987 689999999999999999998776543 3689999887653 34568999999755
Q ss_pred cCCC---CC--HHHHHHHHHHhcCCCcEEEEEe
Q 016921 236 GEHM---PD--KSKFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 236 l~~~---~~--~~~~l~~~~r~LkpgG~l~~~~ 263 (380)
++.. .+ ..++++.+.++|+|||.|++..
T Consensus 308 fh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~ 340 (378)
T PRK15001 308 FHQQHALTDNVAWEMFHHARRCLKINGELYIVA 340 (378)
T ss_pred cccCccCCHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 5433 22 3578999999999999999985
No 91
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=99.46 E-value=8.3e-13 Score=116.26 Aligned_cols=95 Identities=21% Similarity=0.293 Sum_probs=77.5
Q ss_pred CCCEEEEECCCcChHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC--------CCCCCc
Q 016921 158 RPKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP--------FPDGQF 227 (380)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~--~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--------~~~~~f 227 (380)
++.+|||||||+|.++..+++.. ...|+|+|+++ | ... +++.++++|+.+.+ +.+++|
T Consensus 51 ~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-~----------~~~-~~v~~i~~D~~~~~~~~~i~~~~~~~~~ 118 (209)
T PRK11188 51 PGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-M----------DPI-VGVDFLQGDFRDELVLKALLERVGDSKV 118 (209)
T ss_pred CCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-c----------cCC-CCcEEEecCCCChHHHHHHHHHhCCCCC
Confidence 48899999999999999999986 36899999998 2 122 36899999998853 567899
Q ss_pred cEEEeccccCCCCCH-----------HHHHHHHHHhcCCCcEEEEEec
Q 016921 228 DLVWSMESGEHMPDK-----------SKFVSELARVTAPAGTIIIVTW 264 (380)
Q Consensus 228 D~V~~~~~l~~~~~~-----------~~~l~~~~r~LkpgG~l~~~~~ 264 (380)
|+|++..+.++..++ ..+++++.++|||||.+++..+
T Consensus 119 D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~ 166 (209)
T PRK11188 119 QVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVF 166 (209)
T ss_pred CEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEe
Confidence 999998766655332 4689999999999999999775
No 92
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=99.46 E-value=2e-12 Score=114.42 Aligned_cols=111 Identities=16% Similarity=0.174 Sum_probs=88.4
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC
Q 016921 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ 220 (380)
Q Consensus 141 ~~~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~ 220 (380)
....++..+.+.+ +.+|||||||+|.++..+++. ..+|+++|+++.+++.+++++...++. ++++..+|..+.
T Consensus 66 ~~~~l~~~l~~~~-----~~~VLeiG~GsG~~t~~la~~-~~~v~~vd~~~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~ 138 (212)
T PRK00312 66 MVARMTELLELKP-----GDRVLEIGTGSGYQAAVLAHL-VRRVFSVERIKTLQWEAKRRLKQLGLH-NVSVRHGDGWKG 138 (212)
T ss_pred HHHHHHHhcCCCC-----CCEEEEECCCccHHHHHHHHH-hCEEEEEeCCHHHHHHHHHHHHHCCCC-ceEEEECCcccC
Confidence 3445555555543 899999999999999988876 468999999999999999999887773 699999998664
Q ss_pred CCCCCCccEEEeccccCCCCCHHHHHHHHHHhcCCCcEEEEEec
Q 016921 221 PFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (380)
Q Consensus 221 ~~~~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~~ 264 (380)
..+.++||+|++...+.++ .+.+.+.|+|||.+++...
T Consensus 139 ~~~~~~fD~I~~~~~~~~~------~~~l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 139 WPAYAPFDRILVTAAAPEI------PRALLEQLKEGGILVAPVG 176 (212)
T ss_pred CCcCCCcCEEEEccCchhh------hHHHHHhcCCCcEEEEEEc
Confidence 3234789999998766554 3567899999999998653
No 93
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=99.45 E-value=1.5e-12 Score=118.07 Aligned_cols=127 Identities=21% Similarity=0.291 Sum_probs=97.3
Q ss_pred CCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEEeccccC
Q 016921 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGE 237 (380)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~ 237 (380)
++.+|||+|||+|.+++..++.....|+|+|++|..++.|+.++..+++...+.....+....+ ..++||+|+++= |
T Consensus 162 ~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~~-~~~~~DvIVANI-L- 238 (300)
T COG2264 162 KGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEVP-ENGPFDVIVANI-L- 238 (300)
T ss_pred CCCEEEEecCChhHHHHHHHHcCCceEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchhhc-ccCcccEEEehh-h-
Confidence 3899999999999999999886345699999999999999999999887643333333333322 346999999864 2
Q ss_pred CCCC-HHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCcEEEE
Q 016921 238 HMPD-KSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKA 316 (380)
Q Consensus 238 ~~~~-~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v~~ 316 (380)
.+ ...+...+.+.|||||+++++.+.. ...+.+.+.++++||+++++
T Consensus 239 --A~vl~~La~~~~~~lkpgg~lIlSGIl~------------------------------~q~~~V~~a~~~~gf~v~~~ 286 (300)
T COG2264 239 --AEVLVELAPDIKRLLKPGGRLILSGILE------------------------------DQAESVAEAYEQAGFEVVEV 286 (300)
T ss_pred --HHHHHHHHHHHHHHcCCCceEEEEeehH------------------------------hHHHHHHHHHHhCCCeEeEE
Confidence 23 2578889999999999999987321 01467888999999999987
Q ss_pred Eec
Q 016921 317 EDW 319 (380)
Q Consensus 317 ~~~ 319 (380)
..-
T Consensus 287 ~~~ 289 (300)
T COG2264 287 LER 289 (300)
T ss_pred Eec
Confidence 544
No 94
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=99.45 E-value=3.3e-13 Score=107.70 Aligned_cols=105 Identities=30% Similarity=0.505 Sum_probs=88.0
Q ss_pred CCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC--CCCCCccEEEecccc
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP--FPDGQFDLVWSMESG 236 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--~~~~~fD~V~~~~~l 236 (380)
|.+|||+|||+|.++..+++....+++|+|+++..++.++.++...++..+++++++|+.+.. +++++||+|+++--.
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP~ 80 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPPY 80 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--ST
T ss_pred CCEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECCCC
Confidence 468999999999999999988448999999999999999999999888788999999998864 678999999997554
Q ss_pred CCCC--------CHHHHHHHHHHhcCCCcEEEEEe
Q 016921 237 EHMP--------DKSKFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 237 ~~~~--------~~~~~l~~~~r~LkpgG~l~~~~ 263 (380)
.... ....+++++.++|||||.+++..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~ 115 (117)
T PF13659_consen 81 GPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFIT 115 (117)
T ss_dssp TSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence 4321 13678999999999999999865
No 95
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.44 E-value=8.3e-12 Score=115.06 Aligned_cols=126 Identities=26% Similarity=0.401 Sum_probs=96.7
Q ss_pred CCCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEEecccc
Q 016921 158 RPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESG 236 (380)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l 236 (380)
++.+|||+|||+|.++..++... ..+|+|+|+|+.+++.+++++. .....++.++.+|+.+. +++++||+|+++--.
T Consensus 108 ~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~-~~~~~~i~~~~~d~~~~-~~~~~fD~Iv~npPy 185 (275)
T PRK09328 108 EPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAK-HGLGARVEFLQGDWFEP-LPGGRFDLIVSNPPY 185 (275)
T ss_pred CCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHH-hCCCCcEEEEEccccCc-CCCCceeEEEECCCc
Confidence 37899999999999999999986 6899999999999999999887 33346899999998653 345789999984211
Q ss_pred C--------------CC------------CCHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchHHHHHHHHHhhc
Q 016921 237 E--------------HM------------PDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDA 290 (380)
Q Consensus 237 ~--------------~~------------~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (380)
. |- .....+++++.++|+|||++++.. +
T Consensus 186 ~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~-g------------------------- 239 (275)
T PRK09328 186 IPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEI-G------------------------- 239 (275)
T ss_pred CCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEE-C-------------------------
Confidence 0 00 113567888899999999998843 1
Q ss_pred cCCCCCCCHHHHHHHHHhCCCcEEEE
Q 016921 291 YYLPAWCSTADYVKLLQSLSLEDIKA 316 (380)
Q Consensus 291 ~~~~~~~~~~~~~~ll~~aGf~~v~~ 316 (380)
+...+.+.+++++.||..++.
T Consensus 240 -----~~~~~~~~~~l~~~gf~~v~~ 260 (275)
T PRK09328 240 -----YDQGEAVRALLAAAGFADVET 260 (275)
T ss_pred -----chHHHHHHHHHHhCCCceeEE
Confidence 012356888999999987665
No 96
>PRK07402 precorrin-6B methylase; Provisional
Probab=99.44 E-value=4e-12 Score=111.13 Aligned_cols=109 Identities=12% Similarity=0.063 Sum_probs=86.0
Q ss_pred HHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCC-CCC
Q 016921 145 TLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ-QPF 222 (380)
Q Consensus 145 ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~ 222 (380)
++..+.+.. +.+|||+|||+|.++..+++.. +.+|+++|+++.+++.+++++...++ .+++++.+|+.+ ++.
T Consensus 32 l~~~l~~~~-----~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~-~~v~~~~~d~~~~~~~ 105 (196)
T PRK07402 32 LISQLRLEP-----DSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGV-KNVEVIEGSAPECLAQ 105 (196)
T ss_pred HHHhcCCCC-----CCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCC-CCeEEEECchHHHHhh
Confidence 445554443 8899999999999999998765 67999999999999999999988777 479999999865 221
Q ss_pred CCCCccEEEeccccCCCCCHHHHHHHHHHhcCCCcEEEEEe
Q 016921 223 PDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 223 ~~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~ 263 (380)
....+|.|+... ..+...+++++.++|+|||.+++..
T Consensus 106 ~~~~~d~v~~~~----~~~~~~~l~~~~~~LkpgG~li~~~ 142 (196)
T PRK07402 106 LAPAPDRVCIEG----GRPIKEILQAVWQYLKPGGRLVATA 142 (196)
T ss_pred CCCCCCEEEEEC----CcCHHHHHHHHHHhcCCCeEEEEEe
Confidence 123467765532 2356789999999999999999976
No 97
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=99.43 E-value=1.6e-11 Score=103.10 Aligned_cols=133 Identities=17% Similarity=0.132 Sum_probs=105.6
Q ss_pred HHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCC
Q 016921 145 TLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFP 223 (380)
Q Consensus 145 ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~ 223 (380)
.+.++.+.+ +.+++|||||||..+..++... .++|+++|-++++++..++++.+.++ +|+.++.+++.+.--.
T Consensus 26 ~ls~L~~~~-----g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~-~n~~vv~g~Ap~~L~~ 99 (187)
T COG2242 26 TLSKLRPRP-----GDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGV-DNLEVVEGDAPEALPD 99 (187)
T ss_pred HHHhhCCCC-----CCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCC-CcEEEEeccchHhhcC
Confidence 345555554 9999999999999999999544 68999999999999999999999995 6999999999774212
Q ss_pred CCCccEEEeccccCCCCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHHHHH
Q 016921 224 DGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYV 303 (380)
Q Consensus 224 ~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (380)
..+||.|+.... . +.+.+++.+...|||||++++.-.. + -+.....
T Consensus 100 ~~~~daiFIGGg-~---~i~~ile~~~~~l~~ggrlV~nait------------------l------------E~~~~a~ 145 (187)
T COG2242 100 LPSPDAIFIGGG-G---NIEEILEAAWERLKPGGRLVANAIT------------------L------------ETLAKAL 145 (187)
T ss_pred CCCCCEEEECCC-C---CHHHHHHHHHHHcCcCCeEEEEeec------------------H------------HHHHHHH
Confidence 227999999887 3 5678999999999999999996521 1 1234566
Q ss_pred HHHHhCCC-cEEEEE
Q 016921 304 KLLQSLSL-EDIKAE 317 (380)
Q Consensus 304 ~ll~~aGf-~~v~~~ 317 (380)
+.+++.|+ +++++.
T Consensus 146 ~~~~~~g~~ei~~v~ 160 (187)
T COG2242 146 EALEQLGGREIVQVQ 160 (187)
T ss_pred HHHHHcCCceEEEEE
Confidence 78899999 666553
No 98
>PHA03411 putative methyltransferase; Provisional
Probab=99.43 E-value=5e-12 Score=113.43 Aligned_cols=124 Identities=18% Similarity=0.224 Sum_probs=95.3
Q ss_pred CCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEEeccccC
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGE 237 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~ 237 (380)
..+|||+|||+|.++..++.+. +.+|+|+|+++.+++.++++. +++.++++|+.+.. ...+||+|+++-.+.
T Consensus 65 ~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~------~~v~~v~~D~~e~~-~~~kFDlIIsNPPF~ 137 (279)
T PHA03411 65 TGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLL------PEAEWITSDVFEFE-SNEKFDVVISNPPFG 137 (279)
T ss_pred CCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC------cCCEEEECchhhhc-ccCCCcEEEEcCCcc
Confidence 5789999999999999888865 579999999999999998753 36899999998865 347899999987777
Q ss_pred CCCC--------------------HHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCC
Q 016921 238 HMPD--------------------KSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWC 297 (380)
Q Consensus 238 ~~~~--------------------~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (380)
+... ..+.+.....+|+|+|.+++.-.+.+. + +.-.
T Consensus 138 ~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~yss~~~----------------------y--~~sl 193 (279)
T PHA03411 138 KINTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFAYSGRPY----------------------Y--DGTM 193 (279)
T ss_pred ccCchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEEEecccc----------------------c--cccC
Confidence 7521 134567778889999977776311110 0 1115
Q ss_pred CHHHHHHHHHhCCCcE
Q 016921 298 STADYVKLLQSLSLED 313 (380)
Q Consensus 298 ~~~~~~~ll~~aGf~~ 313 (380)
++++++++|+++||+.
T Consensus 194 ~~~~y~~~l~~~g~~~ 209 (279)
T PHA03411 194 KSNKYLKWSKQTGLVT 209 (279)
T ss_pred CHHHHHHHHHhcCcEe
Confidence 7899999999999984
No 99
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.43 E-value=7.4e-12 Score=116.49 Aligned_cols=103 Identities=21% Similarity=0.357 Sum_probs=84.0
Q ss_pred CCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEEecc---
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSME--- 234 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~--- 234 (380)
+.+|||+|||+|.++..++... +.+|+++|+|+.+++.|++++...++..++.++++|+.+. +++++||+|+++-
T Consensus 134 ~~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~-l~~~~fDlIvsNPPyi 212 (307)
T PRK11805 134 VTRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAA-LPGRRYDLIVSNPPYV 212 (307)
T ss_pred CCEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhh-CCCCCccEEEECCCCC
Confidence 3689999999999999999886 6899999999999999999999888777899999998652 3456899999851
Q ss_pred ---c-------cCCCCC------------HHHHHHHHHHhcCCCcEEEEE
Q 016921 235 ---S-------GEHMPD------------KSKFVSELARVTAPAGTIIIV 262 (380)
Q Consensus 235 ---~-------l~~~~~------------~~~~l~~~~r~LkpgG~l~~~ 262 (380)
. +.|-+. ...+++++.+.|+|||.+++.
T Consensus 213 ~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E 262 (307)
T PRK11805 213 DAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVE 262 (307)
T ss_pred CccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 0 111111 246789999999999999884
No 100
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=99.42 E-value=1.1e-11 Score=117.68 Aligned_cols=140 Identities=20% Similarity=0.262 Sum_probs=102.2
Q ss_pred HHHHHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcC
Q 016921 138 QVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGD 216 (380)
Q Consensus 138 ~~~~~~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d 216 (380)
...+++.++..+. ++.+|||+|||+|.++..++... +.+|+|+|+|+.+++.|++++...+. ++.++++|
T Consensus 238 TE~LVe~aL~~l~-------~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g~--rV~fi~gD 308 (423)
T PRK14966 238 TEHLVEAVLARLP-------ENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLGA--RVEFAHGS 308 (423)
T ss_pred HHHHHHHhhhccC-------CCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC--cEEEEEcc
Confidence 3445555554432 25699999999999999998875 68999999999999999999987764 79999999
Q ss_pred CCCCCCC-CCCccEEEeccccC-----CC----------------CC----HHHHHHHHHHhcCCCcEEEEEeccCCCCC
Q 016921 217 ALQQPFP-DGQFDLVWSMESGE-----HM----------------PD----KSKFVSELARVTAPAGTIIIVTWCHRDLA 270 (380)
Q Consensus 217 ~~~~~~~-~~~fD~V~~~~~l~-----~~----------------~~----~~~~l~~~~r~LkpgG~l~~~~~~~~~~~ 270 (380)
+.+..++ .++||+|+++--.. .. .| ...+++.+.+.|+|||.+++.. +
T Consensus 309 l~e~~l~~~~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEi-G----- 382 (423)
T PRK14966 309 WFDTDMPSEGKWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEH-G----- 382 (423)
T ss_pred hhccccccCCCccEEEECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEE-C-----
Confidence 8764332 46899999953110 00 01 2356777788999999987643 1
Q ss_pred CCccccchHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCcEEEEE
Q 016921 271 PSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAE 317 (380)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v~~~ 317 (380)
+...+.+.+++++.||..+++.
T Consensus 383 -------------------------~~Q~e~V~~ll~~~Gf~~v~v~ 404 (423)
T PRK14966 383 -------------------------FDQGAAVRGVLAENGFSGVETL 404 (423)
T ss_pred -------------------------ccHHHHHHHHHHHCCCcEEEEE
Confidence 0135678899999999877653
No 101
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=99.42 E-value=3.7e-12 Score=112.68 Aligned_cols=132 Identities=21% Similarity=0.252 Sum_probs=108.1
Q ss_pred CCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC--CCCCCccEEEeccc
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP--FPDGQFDLVWSMES 235 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--~~~~~fD~V~~~~~ 235 (380)
..+|||+|||+|..++.++++. .++++|||+++.+.+.|++.++.+++.++++++++|+.++. ....+||+|+|+=-
T Consensus 45 ~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~~~fD~Ii~NPP 124 (248)
T COG4123 45 KGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVFASFDLIICNPP 124 (248)
T ss_pred CCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcccccccCEEEeCCC
Confidence 7899999999999999999986 69999999999999999999999999999999999998863 34457999999522
Q ss_pred cCCC------------------CCHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCC
Q 016921 236 GEHM------------------PDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWC 297 (380)
Q Consensus 236 l~~~------------------~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (380)
..-. .+.+++++.+..+|||||.+.++... .
T Consensus 125 yf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r~-------------------------------e 173 (248)
T COG4123 125 YFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHRP-------------------------------E 173 (248)
T ss_pred CCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEecH-------------------------------H
Confidence 2111 13468999999999999999997520 1
Q ss_pred CHHHHHHHHHhCCCcEEEEEecCC
Q 016921 298 STADYVKLLQSLSLEDIKAEDWSQ 321 (380)
Q Consensus 298 ~~~~~~~ll~~aGf~~v~~~~~~~ 321 (380)
...++.+++.+.+|+...+..+..
T Consensus 174 rl~ei~~~l~~~~~~~k~i~~V~p 197 (248)
T COG4123 174 RLAEIIELLKSYNLEPKRIQFVYP 197 (248)
T ss_pred HHHHHHHHHHhcCCCceEEEEecC
Confidence 245778889999998887765543
No 102
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.42 E-value=2.5e-12 Score=121.15 Aligned_cols=101 Identities=24% Similarity=0.306 Sum_probs=85.4
Q ss_pred CCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEEeccccC
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGE 237 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~ 237 (380)
..+|||+|||+|.++..+++.. +.+|+++|+|+.+++.++++++..++. .+++..|.... ..++||+|+++-.+|
T Consensus 197 ~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l~--~~~~~~D~~~~--~~~~fDlIvsNPPFH 272 (342)
T PRK09489 197 KGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGLE--GEVFASNVFSD--IKGRFDMIISNPPFH 272 (342)
T ss_pred CCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC--CEEEEcccccc--cCCCccEEEECCCcc
Confidence 5689999999999999999886 579999999999999999999887763 56777887653 257899999988777
Q ss_pred CC-----CCHHHHHHHHHHhcCCCcEEEEEe
Q 016921 238 HM-----PDKSKFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 238 ~~-----~~~~~~l~~~~r~LkpgG~l~~~~ 263 (380)
.. .....+++++.+.|||||.++++.
T Consensus 273 ~g~~~~~~~~~~~i~~a~~~LkpgG~L~iVa 303 (342)
T PRK09489 273 DGIQTSLDAAQTLIRGAVRHLNSGGELRIVA 303 (342)
T ss_pred CCccccHHHHHHHHHHHHHhcCcCCEEEEEE
Confidence 53 234789999999999999999876
No 103
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=99.42 E-value=2.2e-12 Score=118.33 Aligned_cols=145 Identities=21% Similarity=0.291 Sum_probs=102.5
Q ss_pred CcccHHHHHHHHHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCC
Q 016921 130 SVSDHRAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADK 209 (380)
Q Consensus 130 ~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~ 209 (380)
.++.-.....++.-+++..... ++.+|||+|||+|.+++..++....+|+|+|+++..++.|++++..+++..+
T Consensus 139 AFGTG~H~TT~lcl~~l~~~~~------~g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~~N~~~N~~~~~ 212 (295)
T PF06325_consen 139 AFGTGHHPTTRLCLELLEKYVK------PGKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAARENAELNGVEDR 212 (295)
T ss_dssp SS-SSHCHHHHHHHHHHHHHSS------TTSEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHHHHHHHTT-TTC
T ss_pred cccCCCCHHHHHHHHHHHHhcc------CCCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHHcCCCee
Confidence 3444344444555555555532 3789999999999999998886345899999999999999999999999876
Q ss_pred eEEEEcCCCCCCCCCCCccEEEeccccCCCCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchHHHHHHHHHhh
Q 016921 210 VSFQVGDALQQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICD 289 (380)
Q Consensus 210 v~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (380)
+.+. ...+ ...++||+|+++-... -...++..+.++|+|||+++++.+..
T Consensus 213 ~~v~--~~~~--~~~~~~dlvvANI~~~---vL~~l~~~~~~~l~~~G~lIlSGIl~----------------------- 262 (295)
T PF06325_consen 213 IEVS--LSED--LVEGKFDLVVANILAD---VLLELAPDIASLLKPGGYLILSGILE----------------------- 262 (295)
T ss_dssp EEES--CTSC--TCCS-EEEEEEES-HH---HHHHHHHHCHHHEEEEEEEEEEEEEG-----------------------
T ss_pred EEEE--Eecc--cccccCCEEEECCCHH---HHHHHHHHHHHhhCCCCEEEEccccH-----------------------
Confidence 6553 2222 2358999999864322 23567788999999999999987421
Q ss_pred ccCCCCCCCHHHHHHHHHhCCCcEEEEEe
Q 016921 290 AYYLPAWCSTADYVKLLQSLSLEDIKAED 318 (380)
Q Consensus 290 ~~~~~~~~~~~~~~~ll~~aGf~~v~~~~ 318 (380)
...+++.+.+++ ||+.++...
T Consensus 263 -------~~~~~v~~a~~~-g~~~~~~~~ 283 (295)
T PF06325_consen 263 -------EQEDEVIEAYKQ-GFELVEERE 283 (295)
T ss_dssp -------GGHHHHHHHHHT-TEEEEEEEE
T ss_pred -------HHHHHHHHHHHC-CCEEEEEEE
Confidence 124677788877 999887654
No 104
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.41 E-value=5.4e-12 Score=108.29 Aligned_cols=110 Identities=19% Similarity=0.303 Sum_probs=95.1
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC
Q 016921 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ 220 (380)
Q Consensus 141 ~~~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~ 220 (380)
++..+++.+.+++ +.+|||||||+|..+..|++. ..+|+.+|..+...+.|++++...|+. ||.++++|...-
T Consensus 60 ~vA~m~~~L~~~~-----g~~VLEIGtGsGY~aAvla~l-~~~V~siEr~~~L~~~A~~~L~~lg~~-nV~v~~gDG~~G 132 (209)
T COG2518 60 MVARMLQLLELKP-----GDRVLEIGTGSGYQAAVLARL-VGRVVSIERIEELAEQARRNLETLGYE-NVTVRHGDGSKG 132 (209)
T ss_pred HHHHHHHHhCCCC-----CCeEEEECCCchHHHHHHHHH-hCeEEEEEEcHHHHHHHHHHHHHcCCC-ceEEEECCcccC
Confidence 6777888887765 999999999999999999987 459999999999999999999999985 599999998764
Q ss_pred CCCCCCccEEEeccccCCCCCHHHHHHHHHHhcCCCcEEEEEe
Q 016921 221 PFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 221 ~~~~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~ 263 (380)
.-+..+||.|+...+...+|+ .+.+.||+||++++-.
T Consensus 133 ~~~~aPyD~I~Vtaaa~~vP~------~Ll~QL~~gGrlv~Pv 169 (209)
T COG2518 133 WPEEAPYDRIIVTAAAPEVPE------ALLDQLKPGGRLVIPV 169 (209)
T ss_pred CCCCCCcCEEEEeeccCCCCH------HHHHhcccCCEEEEEE
Confidence 334589999999988887764 4778899999999965
No 105
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=99.41 E-value=6.3e-13 Score=124.93 Aligned_cols=217 Identities=32% Similarity=0.446 Sum_probs=156.2
Q ss_pred HHHHHHHHHHHhccchhhHHHhhcccccccccCCCCCCCcccHHHHHHHHHHHHHHHcCCCCCCCCCCCEEEEECCCcCh
Q 016921 92 ARELKEGIAEFYDESSSLWEDIWGDHMHHGFYEPDSSVSVSDHRAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGG 171 (380)
Q Consensus 92 ~~~~~~~i~~~yd~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~vLDiGcGtG~ 171 (380)
...+.+.++++|+...++|..-|+..+|++-+ ..... ... .......+..+.. ...++.+++|+|||-|.
T Consensus 54 ~~~~~e~~~~~y~~~~dl~~~~w~~~~h~~~~-~e~~~----~~~--~~~~~~~~~~l~~---~~~~~~~~~~~~~g~~~ 123 (364)
T KOG1269|consen 54 TEDLPEQIAKYYNNSTDLYERNWGQSFHFGRI-PEGNS----NEM--FWIRHEGIVALRE---SCFPGSKVLDVGTGVGG 123 (364)
T ss_pred ccccchHHHHHhcccchhhhhhhccchhccCc-cchhH----HHH--HHHhhcchHHHhh---cCcccccccccCcCcCc
Confidence 55667779999999999999999999998766 22111 111 1111111111111 11346789999999999
Q ss_pred HHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEEeccccCCCCCHHHHHHHHHH
Q 016921 172 SSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEHMPDKSKFVSELAR 251 (380)
Q Consensus 172 ~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~~~~~~l~~~~r 251 (380)
...+++.-.++.++|+|+++..+..+.......++..+..++.+|+.+.|++++.||.+.+..+.+|.++...++.+++|
T Consensus 124 ~~~~i~~f~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~fedn~fd~v~~ld~~~~~~~~~~~y~Ei~r 203 (364)
T KOG1269|consen 124 PSRYIAVFKKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPFEDNTFDGVRFLEVVCHAPDLEKVYAEIYR 203 (364)
T ss_pred hhHHHHHhccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCCCccccCcEEEEeecccCCcHHHHHHHHhc
Confidence 99999886579999999999999999998888888777888999999999999999999999999999999999999999
Q ss_pred hcCCCcEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCcEEEEEecCC
Q 016921 252 VTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAEDWSQ 321 (380)
Q Consensus 252 ~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v~~~~~~~ 321 (380)
+++|||.+++.++........... ........+..+-..+....-..+..+++..||..+..+....
T Consensus 204 v~kpGG~~i~~e~i~~~~~~~~~~---~~~~i~~~i~~gd~~~~~~~~~d~~~~~~~~~~~~~~~~~dl~ 270 (364)
T KOG1269|consen 204 VLKPGGLFIVKEWIKTAKLKKPNS---EHVDILLEIEGGDALPAETFNTDVFDLLKSFGFEHLKLEKDLA 270 (364)
T ss_pred ccCCCceEEeHHHHHhhhccCCCc---ccccccCceeccccccceeccccHHHHHhhccchhhhhccccc
Confidence 999999999998865432211110 1111222222222222223445677888899999887554443
No 106
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=99.40 E-value=2e-12 Score=111.67 Aligned_cols=100 Identities=18% Similarity=0.190 Sum_probs=74.6
Q ss_pred CEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEEeccccCCC
Q 016921 160 KNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEHM 239 (380)
Q Consensus 160 ~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~~ 239 (380)
..++|+|||+|..++.+++. ..+|+|+|+|+.|++.|++................+..++--.+++.|+|++..++|++
T Consensus 35 ~~a~DvG~G~Gqa~~~iae~-~k~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~~Aqa~HWF 113 (261)
T KOG3010|consen 35 RLAWDVGTGNGQAARGIAEH-YKEVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLGGEESVDLITAAQAVHWF 113 (261)
T ss_pred ceEEEeccCCCcchHHHHHh-hhhheeecCCHHHHHHhhcCCCcccccCCccccccccccccCCCcceeeehhhhhHHhh
Confidence 37999999999888888887 57899999999999988875432221111222333333332237999999999999988
Q ss_pred CCHHHHHHHHHHhcCCCcEEEE
Q 016921 240 PDKSKFVSELARVTAPAGTIII 261 (380)
Q Consensus 240 ~~~~~~l~~~~r~LkpgG~l~~ 261 (380)
|.+.++++++|+||+.|-++.
T Consensus 114 -dle~fy~~~~rvLRk~Gg~ia 134 (261)
T KOG3010|consen 114 -DLERFYKEAYRVLRKDGGLIA 134 (261)
T ss_pred -chHHHHHHHHHHcCCCCCEEE
Confidence 888999999999998874443
No 107
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=99.39 E-value=1.2e-11 Score=111.67 Aligned_cols=145 Identities=24% Similarity=0.274 Sum_probs=102.6
Q ss_pred HHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCC
Q 016921 144 ETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPF 222 (380)
Q Consensus 144 ~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~ 222 (380)
.++....... ..+|||||+|+|.++..+++++ +.+++..|+ |..++.+++ .++++++.+|+. .++
T Consensus 91 ~~~~~~d~~~-----~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~-------~~rv~~~~gd~f-~~~ 156 (241)
T PF00891_consen 91 ILLEAFDFSG-----FKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKE-------ADRVEFVPGDFF-DPL 156 (241)
T ss_dssp HHHHHSTTTT-----SSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHH-------TTTEEEEES-TT-TCC
T ss_pred hhhccccccC-----ccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhcccc-------ccccccccccHH-hhh
Confidence 3444444443 6799999999999999999998 899999999 888888877 379999999998 566
Q ss_pred CCCCccEEEeccccCCCCCH--HHHHHHHHHhcCCC--cEEEEEeccCCCCCCCccccc-hHHHHHHHHHhhccCCCCCC
Q 016921 223 PDGQFDLVWSMESGEHMPDK--SKFVSELARVTAPA--GTIIIVTWCHRDLAPSEESLQ-PWEQELLKKICDAYYLPAWC 297 (380)
Q Consensus 223 ~~~~fD~V~~~~~l~~~~~~--~~~l~~~~r~Lkpg--G~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 297 (380)
|. +|+|++.+++|++++. ..+|+++++.|+|| |+|+|.+...+.......... ....++.--.... + .-+
T Consensus 157 P~--~D~~~l~~vLh~~~d~~~~~iL~~~~~al~pg~~g~llI~e~~~~~~~~~~~~~~~~~~~dl~ml~~~~-G--~~r 231 (241)
T PF00891_consen 157 PV--ADVYLLRHVLHDWSDEDCVKILRNAAAALKPGKDGRLLIIEMVLPDDRTGPPSAEMDALFDLNMLVLTG-G--KER 231 (241)
T ss_dssp SS--ESEEEEESSGGGS-HHHHHHHHHHHHHHSEECTTEEEEEEEEEECSSSSSHHHHHHHHHHHHHHHHHHS-S--S-E
T ss_pred cc--ccceeeehhhhhcchHHHHHHHHHHHHHhCCCCCCeEEEEeeccCCCCCCchHHHHHHHHHHHHHHhcC-C--CCc
Confidence 65 9999999999999764 67999999999999 999999987554332221110 0111111111111 2 236
Q ss_pred CHHHHHHHHH
Q 016921 298 STADYVKLLQ 307 (380)
Q Consensus 298 ~~~~~~~ll~ 307 (380)
|.++|++||+
T Consensus 232 t~~e~~~ll~ 241 (241)
T PF00891_consen 232 TEEEWEALLK 241 (241)
T ss_dssp EHHHHHHHHH
T ss_pred CHHHHHHHhC
Confidence 8999998874
No 108
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.39 E-value=4.7e-12 Score=117.93 Aligned_cols=111 Identities=14% Similarity=0.261 Sum_probs=89.4
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcC--CEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCC
Q 016921 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFG--AKCQGITLSPVQAQRANALAAARGLADKVSFQVGDAL 218 (380)
Q Consensus 141 ~~~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~--~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~ 218 (380)
++..+++.+.+++ +.+|||||||+|.++..+++..+ ..|+++|+++.+++.|++++...+. .++.++++|+.
T Consensus 68 l~a~ll~~L~i~~-----g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~-~nV~~i~gD~~ 141 (322)
T PRK13943 68 LMALFMEWVGLDK-----GMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGI-ENVIFVCGDGY 141 (322)
T ss_pred HHHHHHHhcCCCC-----CCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCC-CcEEEEeCChh
Confidence 4555666665544 88999999999999999998763 4799999999999999999988877 57999999987
Q ss_pred CCCCCCCCccEEEeccccCCCCCHHHHHHHHHHhcCCCcEEEEEe
Q 016921 219 QQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 219 ~~~~~~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~ 263 (380)
......++||+|++...+.++ ...+.+.|+|||.+++..
T Consensus 142 ~~~~~~~~fD~Ii~~~g~~~i------p~~~~~~LkpgG~Lvv~~ 180 (322)
T PRK13943 142 YGVPEFAPYDVIFVTVGVDEV------PETWFTQLKEGGRVIVPI 180 (322)
T ss_pred hcccccCCccEEEECCchHHh------HHHHHHhcCCCCEEEEEe
Confidence 765445789999998666544 235678999999988854
No 109
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=99.38 E-value=6.8e-12 Score=106.68 Aligned_cols=117 Identities=22% Similarity=0.332 Sum_probs=91.5
Q ss_pred HHHHHHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcC
Q 016921 137 AQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGD 216 (380)
Q Consensus 137 ~~~~~~~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d 216 (380)
.+.++.+..++.+.++. ..+.-|||||||+|..+..+.+. |..++|+|+|+.|++.|.++--+ -.++.+|
T Consensus 32 IQ~em~eRaLELLalp~---~~~~~iLDIGCGsGLSg~vL~~~-Gh~wiGvDiSpsML~~a~~~e~e------gdlil~D 101 (270)
T KOG1541|consen 32 IQAEMAERALELLALPG---PKSGLILDIGCGSGLSGSVLSDS-GHQWIGVDISPSMLEQAVERELE------GDLILCD 101 (270)
T ss_pred ehHHHHHHHHHHhhCCC---CCCcEEEEeccCCCcchheeccC-CceEEeecCCHHHHHHHHHhhhh------cCeeeee
Confidence 44556666677666543 34778999999999999988876 78999999999999999874322 2356777
Q ss_pred CC-CCCCCCCCccEEEeccccCCCC-------CH----HHHHHHHHHhcCCCcEEEEEe
Q 016921 217 AL-QQPFPDGQFDLVWSMESGEHMP-------DK----SKFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 217 ~~-~~~~~~~~fD~V~~~~~l~~~~-------~~----~~~l~~~~r~LkpgG~l~~~~ 263 (380)
+- .+||..++||.+++..++.++- ++ ..++..++.+|++|++.++.-
T Consensus 102 MG~GlpfrpGtFDg~ISISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~Qf 160 (270)
T KOG1541|consen 102 MGEGLPFRPGTFDGVISISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQF 160 (270)
T ss_pred cCCCCCCCCCccceEEEeeeeeeecccCccccChHHHHHHHhhhhhhhhccCceeEEEe
Confidence 64 4799999999999988887761 22 357888999999999999865
No 110
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=99.37 E-value=2.7e-11 Score=107.99 Aligned_cols=169 Identities=24% Similarity=0.320 Sum_probs=122.6
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHc-C--CEEEEEeCCHHHHHHHHHHHHHcCCCCCeE
Q 016921 135 RAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF-G--AKCQGITLSPVQAQRANALAAARGLADKVS 211 (380)
Q Consensus 135 ~~~~~~~~~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~-~--~~v~giD~s~~~~~~a~~~~~~~~~~~~v~ 211 (380)
.....+++.+.+..+... ..+.+||||+||.|...+...... . .+|...|.|+..++.+++.+++.|+.+-++
T Consensus 116 k~~l~~~i~~ai~~L~~~----g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~ 191 (311)
T PF12147_consen 116 KVHLEELIRQAIARLREQ----GRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIAR 191 (311)
T ss_pred HHHHHHHHHHHHHHHHhc----CCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceE
Confidence 344455555555544322 247899999999999998888776 2 689999999999999999999999987679
Q ss_pred EEEcCCCCCC-CC--CCCccEEEeccccCCCCCH---HHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchHHHHHHH
Q 016921 212 FQVGDALQQP-FP--DGQFDLVWSMESGEHMPDK---SKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLK 285 (380)
Q Consensus 212 ~~~~d~~~~~-~~--~~~fD~V~~~~~l~~~~~~---~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (380)
|.++|+.+.. +. +-..|+++.++.++.++|. ...+..+.+.+.|||+++.+.- |.+..+.... ..+.
T Consensus 192 f~~~dAfd~~~l~~l~p~P~l~iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQ------PwHPQle~IA-r~Lt 264 (311)
T PF12147_consen 192 FEQGDAFDRDSLAALDPAPTLAIVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTGQ------PWHPQLEMIA-RVLT 264 (311)
T ss_pred EEecCCCCHhHhhccCCCCCEEEEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCC------CCCcchHHHH-HHHh
Confidence 9999998742 11 3457999999999999884 4678899999999999999752 2222222111 1111
Q ss_pred HH--hhccCCCCCCCHHHHHHHHHhCCCcEEE
Q 016921 286 KI--CDAYYLPAWCSTADYVKLLQSLSLEDIK 315 (380)
Q Consensus 286 ~~--~~~~~~~~~~~~~~~~~ll~~aGf~~v~ 315 (380)
.- ...| +-+..++.++.+++++|||+-++
T Consensus 265 sHr~g~~W-vMRrRsq~EmD~Lv~~aGF~K~~ 295 (311)
T PF12147_consen 265 SHRDGKAW-VMRRRSQAEMDQLVEAAGFEKID 295 (311)
T ss_pred cccCCCce-EEEecCHHHHHHHHHHcCCchhh
Confidence 11 1122 23458999999999999998554
No 111
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=99.37 E-value=1.9e-11 Score=107.25 Aligned_cols=110 Identities=21% Similarity=0.363 Sum_probs=96.6
Q ss_pred HHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC
Q 016921 143 EETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ 220 (380)
Q Consensus 143 ~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~--~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~ 220 (380)
..++..+++.+ +.+|||.|.|+|.++..|+... ..+|+.+|+.++..+.|++++++.++.+++.+..+|+.+.
T Consensus 84 ~~I~~~~gi~p-----g~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~ 158 (256)
T COG2519 84 GYIVARLGISP-----GSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREG 158 (256)
T ss_pred HHHHHHcCCCC-----CCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEecccccc
Confidence 34556667765 9999999999999999999866 3799999999999999999999989988899999999887
Q ss_pred CCCCCCccEEEeccccCCCCCHHHHHHHHHHhcCCCcEEEEEe
Q 016921 221 PFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 221 ~~~~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~ 263 (380)
-++ +.||+|+. -+++|-.+++.+.++|||||.+++..
T Consensus 159 ~~~-~~vDav~L-----Dmp~PW~~le~~~~~Lkpgg~~~~y~ 195 (256)
T COG2519 159 IDE-EDVDAVFL-----DLPDPWNVLEHVSDALKPGGVVVVYS 195 (256)
T ss_pred ccc-cccCEEEE-----cCCChHHHHHHHHHHhCCCcEEEEEc
Confidence 654 48999987 45899999999999999999999975
No 112
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=99.37 E-value=3.8e-12 Score=111.40 Aligned_cols=112 Identities=23% Similarity=0.353 Sum_probs=88.2
Q ss_pred HHHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcC--CEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCC
Q 016921 140 RMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFG--AKCQGITLSPVQAQRANALAAARGLADKVSFQVGDA 217 (380)
Q Consensus 140 ~~~~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~--~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~ 217 (380)
.++..+++.+.+++ +.+|||||||+|..+..++...+ ..|+++|+.+...+.|++++...+. .++.++++|.
T Consensus 59 ~~~a~~l~~L~l~p-----g~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~-~nv~~~~gdg 132 (209)
T PF01135_consen 59 SMVARMLEALDLKP-----GDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGI-DNVEVVVGDG 132 (209)
T ss_dssp HHHHHHHHHTTC-T-----T-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTT-HSEEEEES-G
T ss_pred HHHHHHHHHHhcCC-----CCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhcc-CceeEEEcch
Confidence 46777888887765 99999999999999999998764 4799999999999999999998877 4899999998
Q ss_pred CCCCCCCCCccEEEeccccCCCCCHHHHHHHHHHhcCCCcEEEEEe
Q 016921 218 LQQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 218 ~~~~~~~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~ 263 (380)
.....+..+||.|++..+...++ ..+.+.|++||+|++-.
T Consensus 133 ~~g~~~~apfD~I~v~~a~~~ip------~~l~~qL~~gGrLV~pi 172 (209)
T PF01135_consen 133 SEGWPEEAPFDRIIVTAAVPEIP------EALLEQLKPGGRLVAPI 172 (209)
T ss_dssp GGTTGGG-SEEEEEESSBBSS--------HHHHHTEEEEEEEEEEE
T ss_pred hhccccCCCcCEEEEeeccchHH------HHHHHhcCCCcEEEEEE
Confidence 76433457899999998876553 34778899999999954
No 113
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=99.35 E-value=3.3e-11 Score=106.20 Aligned_cols=106 Identities=17% Similarity=0.213 Sum_probs=87.7
Q ss_pred CCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHH-----------cCCCCCeEEEEcCCCCCCCC---C
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAA-----------RGLADKVSFQVGDALQQPFP---D 224 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~-----------~~~~~~v~~~~~d~~~~~~~---~ 224 (380)
+.+||+.|||.|..+..|+++ |.+|+|+|+|+..++.+.+.... ..-..++++.++|+.+++.. .
T Consensus 44 ~~rvLvPgCGkg~D~~~LA~~-G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~~~~ 122 (226)
T PRK13256 44 SSVCLIPMCGCSIDMLFFLSK-GVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIANNL 122 (226)
T ss_pred CCeEEEeCCCChHHHHHHHhC-CCcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCcccccc
Confidence 789999999999999999997 89999999999999987552100 00124789999999998632 2
Q ss_pred CCccEEEeccccCCCCC--HHHHHHHHHHhcCCCcEEEEEecc
Q 016921 225 GQFDLVWSMESGEHMPD--KSKFVSELARVTAPAGTIIIVTWC 265 (380)
Q Consensus 225 ~~fD~V~~~~~l~~~~~--~~~~l~~~~r~LkpgG~l~~~~~~ 265 (380)
+.||+|+-..++++++. ..+.++.+.++|+|||.+++..+.
T Consensus 123 ~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll~~~ 165 (226)
T PRK13256 123 PVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLLVME 165 (226)
T ss_pred CCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEEEEe
Confidence 68999999999999953 578999999999999999998763
No 114
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=99.34 E-value=3.1e-11 Score=119.72 Aligned_cols=126 Identities=15% Similarity=0.171 Sum_probs=97.1
Q ss_pred CCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEEecc---
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSME--- 234 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~--- 234 (380)
+.+|||+|||+|.++..++... +.+|+++|+|+.+++.|++++...++.+++.++++|+.+. ++.++||+|+++-
T Consensus 139 ~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~-~~~~~fDlIvsNPPYi 217 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFEN-IEKQKFDFIVSNPPYI 217 (506)
T ss_pred CCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhh-CcCCCccEEEECCCCC
Confidence 5689999999999999998876 6899999999999999999998888777899999997652 3456899999842
Q ss_pred -----------ccCCCC--------C----HHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchHHHHHHHHHhhcc
Q 016921 235 -----------SGEHMP--------D----KSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAY 291 (380)
Q Consensus 235 -----------~l~~~~--------~----~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (380)
+..|-+ | ...+++.+.++|+|||.+++.. +.
T Consensus 218 ~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEi-g~------------------------- 271 (506)
T PRK01544 218 SHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEI-GF------------------------- 271 (506)
T ss_pred CchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEE-CC-------------------------
Confidence 111111 1 2356788899999999988742 11
Q ss_pred CCCCCCCHHHHHHHHHhCCCcEEEE
Q 016921 292 YLPAWCSTADYVKLLQSLSLEDIKA 316 (380)
Q Consensus 292 ~~~~~~~~~~~~~ll~~aGf~~v~~ 316 (380)
...+.+.+++++.||..+.+
T Consensus 272 -----~q~~~v~~~~~~~g~~~~~~ 291 (506)
T PRK01544 272 -----KQEEAVTQIFLDHGYNIESV 291 (506)
T ss_pred -----chHHHHHHHHHhcCCCceEE
Confidence 13467778888889986654
No 115
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=99.34 E-value=3.7e-11 Score=103.09 Aligned_cols=157 Identities=18% Similarity=0.179 Sum_probs=113.2
Q ss_pred CEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCC--------CCCCccEE
Q 016921 160 KNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPF--------PDGQFDLV 230 (380)
Q Consensus 160 ~~vLDiGcGtG~~~~~l~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~--------~~~~fD~V 230 (380)
.+|||||||||..+.++++.+ .....-.|+++..+...+......+++.-..-+..|+...+. ..++||+|
T Consensus 27 ~~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~~~D~i 106 (204)
T PF06080_consen 27 TRVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPESFDAI 106 (204)
T ss_pred ceEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCCCccee
Confidence 369999999999999999998 788999999999988888877777764333445666666432 24589999
Q ss_pred EeccccCCCC--CHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHHHHHHHHHh
Q 016921 231 WSMESGEHMP--DKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQS 308 (380)
Q Consensus 231 ~~~~~l~~~~--~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ 308 (380)
++..++|-.+ ..+.+++.+.++|++||.|++......+...... -+......++.....+++ .+.+++.++.++
T Consensus 107 ~~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~YGPF~~~G~~ts~-SN~~FD~sLr~rdp~~Gi---RD~e~v~~lA~~ 182 (204)
T PF06080_consen 107 FCINMLHISPWSAVEGLFAGAARLLKPGGLLFLYGPFNRDGKFTSE-SNAAFDASLRSRDPEWGI---RDIEDVEALAAA 182 (204)
T ss_pred eehhHHHhcCHHHHHHHHHHHHHhCCCCCEEEEeCCcccCCEeCCc-HHHHHHHHHhcCCCCcCc---cCHHHHHHHHHH
Confidence 9999997764 3478999999999999999998754333211111 111122233333334444 478999999999
Q ss_pred CCCcEEEEEecC
Q 016921 309 LSLEDIKAEDWS 320 (380)
Q Consensus 309 aGf~~v~~~~~~ 320 (380)
+|++.++..+..
T Consensus 183 ~GL~l~~~~~MP 194 (204)
T PF06080_consen 183 HGLELEEDIDMP 194 (204)
T ss_pred CCCccCcccccC
Confidence 999988765544
No 116
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=99.33 E-value=1.7e-11 Score=108.24 Aligned_cols=139 Identities=24% Similarity=0.360 Sum_probs=100.7
Q ss_pred CCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHc------C-----CCCCeEEEEcCCCCCCCCC-CC
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAAR------G-----LADKVSFQVGDALQQPFPD-GQ 226 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~------~-----~~~~v~~~~~d~~~~~~~~-~~ 226 (380)
+.+||..|||.|..+..|+++ |.+|+|+|+|+..++.+.+..... + -..+|++.++|+.+++... ++
T Consensus 38 ~~rvLvPgCG~g~D~~~La~~-G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~~~g~ 116 (218)
T PF05724_consen 38 GGRVLVPGCGKGYDMLWLAEQ-GHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPPEDVGK 116 (218)
T ss_dssp SEEEEETTTTTSCHHHHHHHT-TEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGGSCHHS
T ss_pred CCeEEEeCCCChHHHHHHHHC-CCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCChhhcCC
Confidence 789999999999999999997 899999999999999885432210 0 1246899999999975333 58
Q ss_pred ccEEEeccccCCCC--CHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHHHHHH
Q 016921 227 FDLVWSMESGEHMP--DKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVK 304 (380)
Q Consensus 227 fD~V~~~~~l~~~~--~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (380)
||+|+=..+++.++ ...+..+.+.++|+|||.+++..+....... .+-|-..+.+++.+
T Consensus 117 fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~lLi~l~~~~~~~-------------------~GPPf~v~~~ev~~ 177 (218)
T PF05724_consen 117 FDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGLLITLEYPQGEM-------------------EGPPFSVTEEEVRE 177 (218)
T ss_dssp EEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEEEEEEES-CSCS-------------------SSSS----HHHHHH
T ss_pred ceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEEEEEEEcCCcCC-------------------CCcCCCCCHHHHHH
Confidence 99999988888884 5689999999999999995555443221110 01111246889999
Q ss_pred HHHhCCCcEEEEEe
Q 016921 305 LLQSLSLEDIKAED 318 (380)
Q Consensus 305 ll~~aGf~~v~~~~ 318 (380)
++. .+|+++..+.
T Consensus 178 l~~-~~f~i~~l~~ 190 (218)
T PF05724_consen 178 LFG-PGFEIEELEE 190 (218)
T ss_dssp HHT-TTEEEEEEEE
T ss_pred Hhc-CCcEEEEEec
Confidence 998 7999887765
No 117
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=99.32 E-value=1.7e-11 Score=105.56 Aligned_cols=193 Identities=15% Similarity=0.175 Sum_probs=118.1
Q ss_pred HHHHHHHHhccchhhHHHhhcccccccccCCCCCCCcccHHHHHHHHHHHHHHHcCCCC-CCCCCCCEEEEECCCcChHH
Q 016921 95 LKEGIAEFYDESSSLWEDIWGDHMHHGFYEPDSSVSVSDHRAAQVRMIEETLRFAGVSE-DPTKRPKNVVDVGCGIGGSS 173 (380)
Q Consensus 95 ~~~~i~~~yd~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~-~~~~~~~~vLDiGcGtG~~~ 173 (380)
.++...+||+......+..+|+--+ ....-.+--+..|..+.... .......++||.|+|.|..+
T Consensus 5 ~y~~a~~YW~~v~atvdGMLGG~~~--------------is~~Di~gS~~FL~~l~~~~~~~~~~~~~alDcGAGIGRVT 70 (218)
T PF05891_consen 5 WYEKAKEYWENVPATVDGMLGGFGH--------------ISRIDIQGSRNFLKKLKRGRKPGKPKFNRALDCGAGIGRVT 70 (218)
T ss_dssp HHHHHHHHHHTS-SSHHHHTTT-GG--------------GHHHHHHHHHHHHHCCCT---------SEEEEET-TTTHHH
T ss_pred HHHHHHHHHcCCCCCccccccCCCC--------------CChHHHHHHHHHHHHHHhhcccCCCCcceEEecccccchhH
Confidence 4555667777766666666665221 11111111223333333221 01224679999999999999
Q ss_pred HHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEEeccccCCCCC--HHHHHHHHHH
Q 016921 174 RYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEHMPD--KSKFVSELAR 251 (380)
Q Consensus 174 ~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~~--~~~~l~~~~r 251 (380)
..++-..-.+|..+|+.+..++.|++.+... ...-.++++..++++..+.++||+|++.+++.|+.| ..++|+++..
T Consensus 71 k~lLl~~f~~VDlVEp~~~Fl~~a~~~l~~~-~~~v~~~~~~gLQ~f~P~~~~YDlIW~QW~lghLTD~dlv~fL~RCk~ 149 (218)
T PF05891_consen 71 KGLLLPVFDEVDLVEPVEKFLEQAKEYLGKD-NPRVGEFYCVGLQDFTPEEGKYDLIWIQWCLGHLTDEDLVAFLKRCKQ 149 (218)
T ss_dssp HHTCCCC-SEEEEEES-HHHHHHHHHHTCCG-GCCEEEEEES-GGG----TT-EEEEEEES-GGGS-HHHHHHHHHHHHH
T ss_pred HHHHHHhcCEeEEeccCHHHHHHHHHHhccc-CCCcceEEecCHhhccCCCCcEeEEEehHhhccCCHHHHHHHHHHHHH
Confidence 8876555679999999999999999766431 123367888888887544579999999999999976 4689999999
Q ss_pred hcCCCcEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCcEEEEE
Q 016921 252 VTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAE 317 (380)
Q Consensus 252 ~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v~~~ 317 (380)
.|+|||.|++-|....... ..++.. ...+ -++.+.+.+++++||++++..+
T Consensus 150 ~L~~~G~IvvKEN~~~~~~---~~~D~~----------DsSv--TRs~~~~~~lF~~AGl~~v~~~ 200 (218)
T PF05891_consen 150 ALKPNGVIVVKENVSSSGF---DEFDEE----------DSSV--TRSDEHFRELFKQAGLRLVKEE 200 (218)
T ss_dssp HEEEEEEEEEEEEEESSSE---EEEETT----------TTEE--EEEHHHHHHHHHHCT-EEEEEE
T ss_pred hCcCCcEEEEEecCCCCCC---cccCCc----------cCee--ecCHHHHHHHHHHcCCEEEEec
Confidence 9999999999885432211 011110 0111 1467899999999999999865
No 118
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=99.31 E-value=2.4e-11 Score=93.55 Aligned_cols=101 Identities=37% Similarity=0.571 Sum_probs=85.1
Q ss_pred EEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCC-CCCCccEEEeccccCC-
Q 016921 161 NVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPF-PDGQFDLVWSMESGEH- 238 (380)
Q Consensus 161 ~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~-~~~~fD~V~~~~~l~~- 238 (380)
+|||+|||.|..+..+++....+++++|+++.++..+++.... ....++.+...|..+... ..++||+|++..++++
T Consensus 1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~ 79 (107)
T cd02440 1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAA-LLADNVEVLKGDAEELPPEADESFDVIISDPPLHHL 79 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhc-ccccceEEEEcChhhhccccCCceEEEEEccceeeh
Confidence 4899999999999999883378999999999999988854332 233578999999988653 4678999999999988
Q ss_pred CCCHHHHHHHHHHhcCCCcEEEEE
Q 016921 239 MPDKSKFVSELARVTAPAGTIIIV 262 (380)
Q Consensus 239 ~~~~~~~l~~~~r~LkpgG~l~~~ 262 (380)
..+...+++.+.+.|+|||.+++.
T Consensus 80 ~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 80 VEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred hhHHHHHHHHHHHHcCCCCEEEEE
Confidence 677889999999999999999875
No 119
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=99.30 E-value=4.8e-11 Score=106.59 Aligned_cols=139 Identities=22% Similarity=0.319 Sum_probs=107.0
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCC
Q 016921 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDAL 218 (380)
Q Consensus 141 ~~~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~--~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~ 218 (380)
-+..++..+++.+ |.+|||.|.|+|.++..+++.. ..+|+..|..++..+.|+++++..|+..++.+.+.|+.
T Consensus 28 D~~~I~~~l~i~p-----G~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~ 102 (247)
T PF08704_consen 28 DISYILMRLDIRP-----GSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVC 102 (247)
T ss_dssp HHHHHHHHTT--T-----T-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GG
T ss_pred hHHHHHHHcCCCC-----CCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEeccee
Confidence 4556677777775 9999999999999999999877 47999999999999999999999999889999999997
Q ss_pred CCCCC---CCCccEEEeccccCCCCCHHHHHHHHHHhc-CCCcEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCC
Q 016921 219 QQPFP---DGQFDLVWSMESGEHMPDKSKFVSELARVT-APAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLP 294 (380)
Q Consensus 219 ~~~~~---~~~fD~V~~~~~l~~~~~~~~~l~~~~r~L-kpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (380)
+..+. +..+|.|+.. +++|-.++..+.++| |+||++++...+. .
T Consensus 103 ~~g~~~~~~~~~DavfLD-----lp~Pw~~i~~~~~~L~~~gG~i~~fsP~i------------------e--------- 150 (247)
T PF08704_consen 103 EEGFDEELESDFDAVFLD-----LPDPWEAIPHAKRALKKPGGRICCFSPCI------------------E--------- 150 (247)
T ss_dssp CG--STT-TTSEEEEEEE-----SSSGGGGHHHHHHHE-EEEEEEEEEESSH------------------H---------
T ss_pred cccccccccCcccEEEEe-----CCCHHHHHHHHHHHHhcCCceEEEECCCH------------------H---------
Confidence 54332 3679999873 578889999999999 8999999876321 0
Q ss_pred CCCCHHHHHHHHHhCCCcEEEEEec
Q 016921 295 AWCSTADYVKLLQSLSLEDIKAEDW 319 (380)
Q Consensus 295 ~~~~~~~~~~ll~~aGf~~v~~~~~ 319 (380)
......+.|++.||..+++.+.
T Consensus 151 ---Qv~~~~~~L~~~gf~~i~~~Ev 172 (247)
T PF08704_consen 151 ---QVQKTVEALREHGFTDIETVEV 172 (247)
T ss_dssp ---HHHHHHHHHHHTTEEEEEEEEE
T ss_pred ---HHHHHHHHHHHCCCeeeEEEEE
Confidence 1234456788899998876543
No 120
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=99.28 E-value=6.8e-11 Score=115.47 Aligned_cols=108 Identities=18% Similarity=0.230 Sum_probs=86.7
Q ss_pred CCCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCC--CCCCccEEEec-
Q 016921 158 RPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPF--PDGQFDLVWSM- 233 (380)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~--~~~~fD~V~~~- 233 (380)
++.+|||+|||+|..+..+++.. +.+|+++|+++.+++.++++++..|+...+.+..+|....+. +.++||.|++.
T Consensus 238 ~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~~~~~~fD~VllDa 317 (426)
T TIGR00563 238 NEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQWAENEQFDRILLDA 317 (426)
T ss_pred CCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeccccccccccccccccCEEEEcC
Confidence 48899999999999999999876 479999999999999999999988875334446777765443 46789999852
Q ss_pred -----cccCCCCC----------------HHHHHHHHHHhcCCCcEEEEEecc
Q 016921 234 -----ESGEHMPD----------------KSKFVSELARVTAPAGTIIIVTWC 265 (380)
Q Consensus 234 -----~~l~~~~~----------------~~~~l~~~~r~LkpgG~l~~~~~~ 265 (380)
+++.+.++ ..+++.++.++|||||.|+.++.+
T Consensus 318 PcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs 370 (426)
T TIGR00563 318 PCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCS 370 (426)
T ss_pred CCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCC
Confidence 34554444 257899999999999999998754
No 121
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=99.28 E-value=2.9e-10 Score=102.94 Aligned_cols=122 Identities=21% Similarity=0.260 Sum_probs=90.5
Q ss_pred CCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC-C-CCCCCccEEEeccc
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ-P-FPDGQFDLVWSMES 235 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~-~~~~~fD~V~~~~~ 235 (380)
+.+|||+|||+|.++..+++.. +.+|+|+|+|+.+++.|++++...+ ++++++|+.+. + ...++||+|+++--
T Consensus 87 ~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~----~~~~~~D~~~~l~~~~~~~fDlVv~NPP 162 (251)
T TIGR03704 87 TLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAG----GTVHEGDLYDALPTALRGRVDILAANAP 162 (251)
T ss_pred CCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC----CEEEEeechhhcchhcCCCEeEEEECCC
Confidence 4689999999999999999876 5799999999999999999987654 47899998653 2 11357999998631
Q ss_pred c------CCC----------------CC----HHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchHHHHHHHHHhh
Q 016921 236 G------EHM----------------PD----KSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICD 289 (380)
Q Consensus 236 l------~~~----------------~~----~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (380)
. ..+ .| ...+++.+.++|+|||++++....
T Consensus 163 y~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~~------------------------ 218 (251)
T TIGR03704 163 YVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETSE------------------------ 218 (251)
T ss_pred CCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECc------------------------
Confidence 1 111 01 236777888999999999986410
Q ss_pred ccCCCCCCCHHHHHHHHHhCCCcEEE
Q 016921 290 AYYLPAWCSTADYVKLLQSLSLEDIK 315 (380)
Q Consensus 290 ~~~~~~~~~~~~~~~ll~~aGf~~v~ 315 (380)
...+++..++++.||....
T Consensus 219 -------~~~~~v~~~l~~~g~~~~~ 237 (251)
T TIGR03704 219 -------RQAPLAVEAFARAGLIARV 237 (251)
T ss_pred -------chHHHHHHHHHHCCCCcee
Confidence 1235677888888987543
No 122
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=99.28 E-value=8.4e-11 Score=105.34 Aligned_cols=103 Identities=20% Similarity=0.285 Sum_probs=86.3
Q ss_pred CCEEEEECCCcChHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC-C-----CCCCCccEE
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ-P-----FPDGQFDLV 230 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~--~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~-----~~~~~fD~V 230 (380)
+.+|||||||+|..+..++... +.+|+++|+++++++.|+++++..++..+++++.+|+.+. + .+.++||+|
T Consensus 69 ~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~fD~V 148 (234)
T PLN02781 69 AKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPEFDFA 148 (234)
T ss_pred CCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCCCCEE
Confidence 7899999999999999888765 5799999999999999999999999988999999999763 1 124689999
Q ss_pred EeccccCCCCCHHHHHHHHHHhcCCCcEEEEEec
Q 016921 231 WSMESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (380)
Q Consensus 231 ~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~~ 264 (380)
++...- +....++..+.+.|+|||.+++...
T Consensus 149 fiDa~k---~~y~~~~~~~~~ll~~GG~ii~dn~ 179 (234)
T PLN02781 149 FVDADK---PNYVHFHEQLLKLVKVGGIIAFDNT 179 (234)
T ss_pred EECCCH---HHHHHHHHHHHHhcCCCeEEEEEcC
Confidence 875321 3446789999999999999888653
No 123
>PRK04457 spermidine synthase; Provisional
Probab=99.27 E-value=5e-11 Score=108.57 Aligned_cols=106 Identities=11% Similarity=0.247 Sum_probs=84.1
Q ss_pred CCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC-CCCCCCccEEEecccc
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ-PFPDGQFDLVWSMESG 236 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~~~~fD~V~~~~~l 236 (380)
+.+|||||||+|.++..+++.. +.+++++|+++.+++.|++.+...+..++++++.+|+.+. .-..++||+|++...-
T Consensus 67 ~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D~~~ 146 (262)
T PRK04457 67 PQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILVDGFD 146 (262)
T ss_pred CCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEEeCCC
Confidence 6799999999999999998877 6899999999999999999876544446899999998653 2223689999975211
Q ss_pred -CCCC---CHHHHHHHHHHhcCCCcEEEEEec
Q 016921 237 -EHMP---DKSKFVSELARVTAPAGTIIIVTW 264 (380)
Q Consensus 237 -~~~~---~~~~~l~~~~r~LkpgG~l~~~~~ 264 (380)
...+ ....+++++.+.|+|||++++..+
T Consensus 147 ~~~~~~~l~t~efl~~~~~~L~pgGvlvin~~ 178 (262)
T PRK04457 147 GEGIIDALCTQPFFDDCRNALSSDGIFVVNLW 178 (262)
T ss_pred CCCCccccCcHHHHHHHHHhcCCCcEEEEEcC
Confidence 1111 126899999999999999999654
No 124
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=99.27 E-value=7.9e-11 Score=115.23 Aligned_cols=106 Identities=19% Similarity=0.268 Sum_probs=88.2
Q ss_pred CCCEEEEECCCcChHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC----CCCCCccEEE
Q 016921 158 RPKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP----FPDGQFDLVW 231 (380)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~--~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~----~~~~~fD~V~ 231 (380)
++.+|||+|||+|..+..+++.. ..+|+++|+++.+++.+++++...|+. ++.++++|+.+++ ...++||.|+
T Consensus 252 ~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~-~v~~~~~D~~~~~~~~~~~~~~fD~Vl 330 (434)
T PRK14901 252 PGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLK-SIKILAADSRNLLELKPQWRGYFDRIL 330 (434)
T ss_pred CcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCC-eEEEEeCChhhcccccccccccCCEEE
Confidence 48899999999999999999875 368999999999999999999988874 6999999998765 3457899999
Q ss_pred ec------cccCCCCC----------------HHHHHHHHHHhcCCCcEEEEEec
Q 016921 232 SM------ESGEHMPD----------------KSKFVSELARVTAPAGTIIIVTW 264 (380)
Q Consensus 232 ~~------~~l~~~~~----------------~~~~l~~~~r~LkpgG~l~~~~~ 264 (380)
+. +++.+-++ ..+++.++.++|||||+|+.++.
T Consensus 331 ~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystc 385 (434)
T PRK14901 331 LDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATC 385 (434)
T ss_pred EeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeC
Confidence 63 34444333 24789999999999999998764
No 125
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=99.26 E-value=2.4e-10 Score=104.87 Aligned_cols=123 Identities=23% Similarity=0.342 Sum_probs=94.0
Q ss_pred EEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEEecc--ccC
Q 016921 161 NVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSME--SGE 237 (380)
Q Consensus 161 ~vLDiGcGtG~~~~~l~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~--~l~ 237 (380)
+|||+|||+|..+..++.+. .+.|+|+|+|+..++.|++++...++ .++.+++.|+.+. . .++||+|+++= .-.
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l-~~~~~~~~dlf~~-~-~~~fDlIVsNPPYip~ 189 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGL-VRVLVVQSDLFEP-L-RGKFDLIVSNPPYIPA 189 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCC-ccEEEEeeecccc-c-CCceeEEEeCCCCCCC
Confidence 79999999999999999987 56999999999999999999999988 6777777776553 2 24899999841 111
Q ss_pred ---CC-C-----C--------------HHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCC
Q 016921 238 ---HM-P-----D--------------KSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLP 294 (380)
Q Consensus 238 ---~~-~-----~--------------~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (380)
+. + + ...++.++.+.|+|||.+++-.-
T Consensus 190 ~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g------------------------------ 239 (280)
T COG2890 190 EDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIG------------------------------ 239 (280)
T ss_pred cccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEEC------------------------------
Confidence 11 0 1 13578889999999998888541
Q ss_pred CCCCHHHHHHHHHhCC-CcEEEEE
Q 016921 295 AWCSTADYVKLLQSLS-LEDIKAE 317 (380)
Q Consensus 295 ~~~~~~~~~~ll~~aG-f~~v~~~ 317 (380)
+...+.+.+++++.| |..+...
T Consensus 240 -~~q~~~v~~~~~~~~~~~~v~~~ 262 (280)
T COG2890 240 -LTQGEAVKALFEDTGFFEIVETL 262 (280)
T ss_pred -CCcHHHHHHHHHhcCCceEEEEE
Confidence 123578889999999 6655443
No 126
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=99.25 E-value=4.8e-11 Score=111.58 Aligned_cols=107 Identities=21% Similarity=0.252 Sum_probs=78.4
Q ss_pred CCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcC---------CCCCeEEEEcCCCCC----CCCC
Q 016921 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARG---------LADKVSFQVGDALQQ----PFPD 224 (380)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~---------~~~~v~~~~~d~~~~----~~~~ 224 (380)
++.+|||+|||-|+.+.-+....-..++|+|++...++.|+++..... ..-...|+.+|.... .+++
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~~ 141 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLPP 141 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSSS
T ss_pred CCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhccc
Confidence 589999999998887766666445799999999999999999993311 112467888887653 1233
Q ss_pred --CCccEEEeccccCCC-CC---HHHHHHHHHHhcCCCcEEEEEec
Q 016921 225 --GQFDLVWSMESGEHM-PD---KSKFVSELARVTAPAGTIIIVTW 264 (380)
Q Consensus 225 --~~fD~V~~~~~l~~~-~~---~~~~l~~~~r~LkpgG~l~~~~~ 264 (380)
..||+|.|.+++|+. .+ ...+++++...|+|||+++.+.+
T Consensus 142 ~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~ 187 (331)
T PF03291_consen 142 RSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTP 187 (331)
T ss_dssp TTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred cCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEec
Confidence 599999999999998 22 35699999999999999999875
No 127
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=99.24 E-value=1.2e-10 Score=102.78 Aligned_cols=95 Identities=21% Similarity=0.347 Sum_probs=76.9
Q ss_pred CCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEEeccccC
Q 016921 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGE 237 (380)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~ 237 (380)
...++||||+|.|..+..++..+ .+|++.+.|+.|....+ ++| .+++ |..+..-.+.+||+|.|.++|.
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~f-~~v~aTE~S~~Mr~rL~----~kg----~~vl--~~~~w~~~~~~fDvIscLNvLD 162 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPLF-KEVYATEASPPMRWRLS----KKG----FTVL--DIDDWQQTDFKFDVISCLNVLD 162 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhhc-ceEEeecCCHHHHHHHH----hCC----CeEE--ehhhhhccCCceEEEeehhhhh
Confidence 46789999999999999999874 67999999999965444 344 3333 3333332356899999999999
Q ss_pred CCCCHHHHHHHHHHhcCCCcEEEEEe
Q 016921 238 HMPDKSKFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 238 ~~~~~~~~l~~~~r~LkpgG~l~~~~ 263 (380)
...+|..+++.+++.|+|+|+++++.
T Consensus 163 Rc~~P~~LL~~i~~~l~p~G~lilAv 188 (265)
T PF05219_consen 163 RCDRPLTLLRDIRRALKPNGRLILAV 188 (265)
T ss_pred ccCCHHHHHHHHHHHhCCCCEEEEEE
Confidence 99999999999999999999999875
No 128
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=99.24 E-value=9e-11 Score=100.12 Aligned_cols=127 Identities=17% Similarity=0.259 Sum_probs=84.5
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC
Q 016921 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ 220 (380)
Q Consensus 141 ~~~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~ 220 (380)
-++.+++.+.-. ++...|-|+|||.+.++..+.+ +..|.-.|+-. .+-.+..+|+.+.
T Consensus 59 Pvd~iI~~l~~~----~~~~viaD~GCGdA~la~~~~~--~~~V~SfDLva----------------~n~~Vtacdia~v 116 (219)
T PF05148_consen 59 PVDVIIEWLKKR----PKSLVIADFGCGDAKLAKAVPN--KHKVHSFDLVA----------------PNPRVTACDIANV 116 (219)
T ss_dssp HHHHHHHHHCTS-----TTS-EEEES-TT-HHHHH--S-----EEEEESS-----------------SSTTEEES-TTS-
T ss_pred cHHHHHHHHHhc----CCCEEEEECCCchHHHHHhccc--CceEEEeeccC----------------CCCCEEEecCccC
Confidence 456666666432 2467999999999998866543 45799999965 2334688999999
Q ss_pred CCCCCCccEEEeccccCCCCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHH
Q 016921 221 PFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTA 300 (380)
Q Consensus 221 ~~~~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (380)
|+++++.|+++++.+|-. .++..+++|+.|+|||||.|.|.|... ++.+.+
T Consensus 117 PL~~~svDv~VfcLSLMG-Tn~~~fi~EA~RvLK~~G~L~IAEV~S----------------------------Rf~~~~ 167 (219)
T PF05148_consen 117 PLEDESVDVAVFCLSLMG-TNWPDFIREANRVLKPGGILKIAEVKS----------------------------RFENVK 167 (219)
T ss_dssp S--TT-EEEEEEES---S-S-HHHHHHHHHHHEEEEEEEEEEEEGG----------------------------G-S-HH
T ss_pred cCCCCceeEEEEEhhhhC-CCcHHHHHHHHheeccCcEEEEEEecc----------------------------cCcCHH
Confidence 999999999998877755 589999999999999999999998531 123567
Q ss_pred HHHHHHHhCCCcEEEEEe
Q 016921 301 DYVKLLQSLSLEDIKAED 318 (380)
Q Consensus 301 ~~~~ll~~aGf~~v~~~~ 318 (380)
.+.+.++..||+.+....
T Consensus 168 ~F~~~~~~~GF~~~~~d~ 185 (219)
T PF05148_consen 168 QFIKALKKLGFKLKSKDE 185 (219)
T ss_dssp HHHHHHHCTTEEEEEEE-
T ss_pred HHHHHHHHCCCeEEeccc
Confidence 888999999999887543
No 129
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=99.24 E-value=2e-10 Score=103.80 Aligned_cols=103 Identities=26% Similarity=0.333 Sum_probs=85.4
Q ss_pred CCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEEeccccC
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGE 237 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~ 237 (380)
+.+|||+|||.|.++..+++.. ..+++.+|+|...++.+++++..+++. +..+...|..+ +.++ +||+|+++=-+|
T Consensus 159 ~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~-~~~v~~s~~~~-~v~~-kfd~IisNPPfh 235 (300)
T COG2813 159 GGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVE-NTEVWASNLYE-PVEG-KFDLIISNPPFH 235 (300)
T ss_pred CCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCC-ccEEEEecccc-cccc-cccEEEeCCCcc
Confidence 5699999999999999999987 689999999999999999999988774 33666666655 3333 999999987776
Q ss_pred CCCCH-----HHHHHHHHHhcCCCcEEEEEec
Q 016921 238 HMPDK-----SKFVSELARVTAPAGTIIIVTW 264 (380)
Q Consensus 238 ~~~~~-----~~~l~~~~r~LkpgG~l~~~~~ 264 (380)
-=.+. .++++.+.+.|++||.|.++-.
T Consensus 236 ~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan 267 (300)
T COG2813 236 AGKAVVHSLAQEIIAAAARHLKPGGELWIVAN 267 (300)
T ss_pred CCcchhHHHHHHHHHHHHHhhccCCEEEEEEc
Confidence 44322 4799999999999999999863
No 130
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=99.23 E-value=1.6e-10 Score=100.24 Aligned_cols=94 Identities=21% Similarity=0.360 Sum_probs=72.8
Q ss_pred CCCEEEEECCCcChHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC--------CCCCCc
Q 016921 158 RPKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP--------FPDGQF 227 (380)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~--~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--------~~~~~f 227 (380)
++.+|||+|||+|.++..+++.. ..+|+++|+++.+ .. .++.++++|+.+.+ ++.++|
T Consensus 32 ~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~-----------~~-~~i~~~~~d~~~~~~~~~l~~~~~~~~~ 99 (188)
T TIGR00438 32 PGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK-----------PI-ENVDFIRGDFTDEEVLNKIRERVGDDKV 99 (188)
T ss_pred CCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc-----------cC-CCceEEEeeCCChhHHHHHHHHhCCCCc
Confidence 48899999999999999998876 3589999999864 11 36888999987642 356789
Q ss_pred cEEEeccccC--------CC---CCHHHHHHHHHHhcCCCcEEEEEe
Q 016921 228 DLVWSMESGE--------HM---PDKSKFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 228 D~V~~~~~l~--------~~---~~~~~~l~~~~r~LkpgG~l~~~~ 263 (380)
|+|++....+ |. .+...+++++.++|+|||++++..
T Consensus 100 D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~ 146 (188)
T TIGR00438 100 DVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKV 146 (188)
T ss_pred cEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEE
Confidence 9999864321 11 113678999999999999999864
No 131
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=99.22 E-value=2.5e-10 Score=111.48 Aligned_cols=105 Identities=21% Similarity=0.302 Sum_probs=84.4
Q ss_pred CCCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC--CCCCCccEEEecc
Q 016921 158 RPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP--FPDGQFDLVWSME 234 (380)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--~~~~~fD~V~~~~ 234 (380)
++.+|||+|||+|..+..+++.. +.+|+++|+++.+++.+++++...|+ ++.++++|+.+++ ++.++||.|++.-
T Consensus 244 ~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~--~~~~~~~D~~~~~~~~~~~~fD~Vl~D~ 321 (427)
T PRK10901 244 NGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGL--KATVIVGDARDPAQWWDGQPFDRILLDA 321 (427)
T ss_pred CCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCC--CeEEEEcCcccchhhcccCCCCEEEECC
Confidence 48999999999999999999876 46999999999999999999988876 3789999998753 3457899999522
Q ss_pred ------ccCCCC------C----------HHHHHHHHHHhcCCCcEEEEEec
Q 016921 235 ------SGEHMP------D----------KSKFVSELARVTAPAGTIIIVTW 264 (380)
Q Consensus 235 ------~l~~~~------~----------~~~~l~~~~r~LkpgG~l~~~~~ 264 (380)
++.+-+ . ..+++..+.++|||||++++++.
T Consensus 322 Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystc 373 (427)
T PRK10901 322 PCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATC 373 (427)
T ss_pred CCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeC
Confidence 111111 1 13689999999999999998874
No 132
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=99.22 E-value=2.1e-10 Score=112.63 Aligned_cols=106 Identities=19% Similarity=0.315 Sum_probs=85.9
Q ss_pred CCCEEEEECCCcChHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEEec--
Q 016921 158 RPKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSM-- 233 (380)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~--~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~-- 233 (380)
++.+|||+|||+|..+..+++.. +.+|+++|+++.+++.+++++...|+. ++.++++|+..++ ++++||+|++.
T Consensus 250 ~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~-~v~~~~~Da~~~~-~~~~fD~Vl~D~P 327 (445)
T PRK14904 250 PGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGIT-IIETIEGDARSFS-PEEQPDAILLDAP 327 (445)
T ss_pred CCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCC-eEEEEeCcccccc-cCCCCCEEEEcCC
Confidence 48899999999999999988865 468999999999999999999988874 7999999998865 45789999962
Q ss_pred -cccCCC---C------C----------HHHHHHHHHHhcCCCcEEEEEecc
Q 016921 234 -ESGEHM---P------D----------KSKFVSELARVTAPAGTIIIVTWC 265 (380)
Q Consensus 234 -~~l~~~---~------~----------~~~~l~~~~r~LkpgG~l~~~~~~ 265 (380)
....++ + + ...++.++.+.|||||+++..+.+
T Consensus 328 csg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs 379 (445)
T PRK14904 328 CTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCS 379 (445)
T ss_pred CCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCC
Confidence 111111 1 1 135899999999999999998743
No 133
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=99.22 E-value=2e-10 Score=97.93 Aligned_cols=109 Identities=22% Similarity=0.287 Sum_probs=82.3
Q ss_pred HHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCC
Q 016921 143 EETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPF 222 (380)
Q Consensus 143 ~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~ 222 (380)
+.+++.+.+.. +.+|||||||+|.++..++++ +.+|+++|+++.+++.+++++.. .++++++.+|+.++++
T Consensus 3 ~~i~~~~~~~~-----~~~vLEiG~G~G~lt~~l~~~-~~~v~~vE~~~~~~~~~~~~~~~---~~~v~ii~~D~~~~~~ 73 (169)
T smart00650 3 DKIVRAANLRP-----GDTVLEIGPGKGALTEELLER-AARVTAIEIDPRLAPRLREKFAA---ADNLTVIHGDALKFDL 73 (169)
T ss_pred HHHHHhcCCCC-----cCEEEEECCCccHHHHHHHhc-CCeEEEEECCHHHHHHHHHHhcc---CCCEEEEECchhcCCc
Confidence 44555555543 789999999999999999987 78999999999999999988743 2479999999999887
Q ss_pred CCCCccEEEeccccCCCCCHHHHHHHHHHh--cCCCcEEEEEe
Q 016921 223 PDGQFDLVWSMESGEHMPDKSKFVSELARV--TAPAGTIIIVT 263 (380)
Q Consensus 223 ~~~~fD~V~~~~~l~~~~~~~~~l~~~~r~--LkpgG~l~~~~ 263 (380)
++.+||.|+++-- +|+. ...+..+.+. +.++|.+++..
T Consensus 74 ~~~~~d~vi~n~P-y~~~--~~~i~~~l~~~~~~~~~~l~~q~ 113 (169)
T smart00650 74 PKLQPYKVVGNLP-YNIS--TPILFKLLEEPPAFRDAVLMVQK 113 (169)
T ss_pred cccCCCEEEECCC-cccH--HHHHHHHHhcCCCcceEEEEEEH
Confidence 7777999987643 3432 3444444433 34677776653
No 134
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=99.21 E-value=1.8e-10 Score=105.30 Aligned_cols=106 Identities=15% Similarity=0.160 Sum_probs=85.5
Q ss_pred CCCEEEEECCCcChHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEEec--
Q 016921 158 RPKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSM-- 233 (380)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~--~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~-- 233 (380)
++.+|||+|||+|..+..+++.. ...|+++|+++.+++.++++++..++ .++.++..|+..++...++||.|++.
T Consensus 71 ~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~-~~v~~~~~D~~~~~~~~~~fD~Vl~D~P 149 (264)
T TIGR00446 71 PPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGV-LNVAVTNFDGRVFGAAVPKFDAILLDAP 149 (264)
T ss_pred CcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCC-CcEEEecCCHHHhhhhccCCCEEEEcCC
Confidence 48899999999999999998876 35899999999999999999998887 46999999988765445679999863
Q ss_pred ----cccCCCCC----------------HHHHHHHHHHhcCCCcEEEEEec
Q 016921 234 ----ESGEHMPD----------------KSKFVSELARVTAPAGTIIIVTW 264 (380)
Q Consensus 234 ----~~l~~~~~----------------~~~~l~~~~r~LkpgG~l~~~~~ 264 (380)
+++.+-++ ..++++.+.+.|||||+|+.++.
T Consensus 150 csg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstc 200 (264)
T TIGR00446 150 CSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTC 200 (264)
T ss_pred CCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeC
Confidence 12221111 13588999999999999998763
No 135
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=99.21 E-value=2.1e-10 Score=111.79 Aligned_cols=107 Identities=19% Similarity=0.254 Sum_probs=87.1
Q ss_pred CCCEEEEECCCcChHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-CCCCCccEEEec-
Q 016921 158 RPKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-FPDGQFDLVWSM- 233 (380)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~--~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-~~~~~fD~V~~~- 233 (380)
++.+|||+|||+|..+..+++.. +.+|+++|+++.+++.++++++..|+. ++.+.++|+..++ +.+++||.|++.
T Consensus 237 ~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~-~v~~~~~Da~~l~~~~~~~fD~Vl~Da 315 (431)
T PRK14903 237 PGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLS-SIEIKIADAERLTEYVQDTFDRILVDA 315 (431)
T ss_pred CCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCC-eEEEEECchhhhhhhhhccCCEEEECC
Confidence 48899999999999999999876 579999999999999999999988874 6899999998765 446789999962
Q ss_pred --cccCCC---CC----------------HHHHHHHHHHhcCCCcEEEEEecc
Q 016921 234 --ESGEHM---PD----------------KSKFVSELARVTAPAGTIIIVTWC 265 (380)
Q Consensus 234 --~~l~~~---~~----------------~~~~l~~~~r~LkpgG~l~~~~~~ 265 (380)
..+..+ ++ ..+++.++.+.|||||.++.++.+
T Consensus 316 PCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs 368 (431)
T PRK14903 316 PCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCT 368 (431)
T ss_pred CCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECC
Confidence 122222 21 145788999999999999998753
No 136
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=99.20 E-value=2e-10 Score=118.62 Aligned_cols=133 Identities=18% Similarity=0.122 Sum_probs=99.9
Q ss_pred CCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCC-CCeEEEEcCCCCCC-CCCCCccEEEecc--
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLA-DKVSFQVGDALQQP-FPDGQFDLVWSME-- 234 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~-~~v~~~~~d~~~~~-~~~~~fD~V~~~~-- 234 (380)
+.+|||+|||+|.++..++.....+|+++|+|+.+++.|++++..+++. .+++++++|+.+.. -..++||+|++.-
T Consensus 539 g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilDPP~ 618 (702)
T PRK11783 539 GKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAREQFDLIFIDPPT 618 (702)
T ss_pred CCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCcCEEEECCCC
Confidence 7899999999999999999862347999999999999999999988885 58999999986631 1146899999842
Q ss_pred ---------ccCCCCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHHHHHHH
Q 016921 235 ---------SGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKL 305 (380)
Q Consensus 235 ---------~l~~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 305 (380)
......+...++..+.++|+|||.+++..... . .+ ...+.
T Consensus 619 f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~~~-~----------------------------~~--~~~~~ 667 (702)
T PRK11783 619 FSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNNKR-G----------------------------FK--MDEEG 667 (702)
T ss_pred CCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeCCc-c----------------------------CC--hhHHH
Confidence 11112344678889999999999988864210 0 11 11577
Q ss_pred HHhCCCcEEEEEecCCC
Q 016921 306 LQSLSLEDIKAEDWSQN 322 (380)
Q Consensus 306 l~~aGf~~v~~~~~~~~ 322 (380)
++++|+....++..+.+
T Consensus 668 ~~~~g~~~~~i~~~~~~ 684 (702)
T PRK11783 668 LAKLGLKAEEITAKTLP 684 (702)
T ss_pred HHhCCCeEEEEecCCCC
Confidence 88899998877755543
No 137
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=99.20 E-value=1.7e-10 Score=98.69 Aligned_cols=150 Identities=18% Similarity=0.133 Sum_probs=113.4
Q ss_pred CCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEEeccccCC
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEH 238 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~ 238 (380)
...++|||||.|.....+..+.-.+++-+|.|..|++.++..- ...-.+...++|-+.++|.++++|+|++...+|+
T Consensus 73 fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s~~~~q---dp~i~~~~~v~DEE~Ldf~ens~DLiisSlslHW 149 (325)
T KOG2940|consen 73 FPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKSCRDAQ---DPSIETSYFVGDEEFLDFKENSVDLIISSLSLHW 149 (325)
T ss_pred CcceeecccchhhhhHHHHhcchhheeeeecchHHHHHhhccC---CCceEEEEEecchhcccccccchhhhhhhhhhhh
Confidence 5579999999999999988775568999999999998876532 1112467888999999999999999999999999
Q ss_pred CCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCC----CCCCCHHHHHHHHHhCCCcEE
Q 016921 239 MPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYL----PAWCSTADYVKLLQSLSLEDI 314 (380)
Q Consensus 239 ~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~ll~~aGf~~v 314 (380)
+.|....+.++...|||+|.++-+.++.+......-. -.+.......++ .++....++..+|..|||..+
T Consensus 150 ~NdLPg~m~~ck~~lKPDg~FiasmlggdTLyELR~s------lqLAelER~GGiSphiSPf~qvrDiG~LL~rAGF~m~ 223 (325)
T KOG2940|consen 150 TNDLPGSMIQCKLALKPDGLFIASMLGGDTLYELRCS------LQLAELEREGGISPHISPFTQVRDIGNLLTRAGFSML 223 (325)
T ss_pred hccCchHHHHHHHhcCCCccchhHHhccccHHHHHHH------hhHHHHHhccCCCCCcChhhhhhhhhhHHhhcCcccc
Confidence 9999999999999999999998877655443322211 112222222222 234456788899999999977
Q ss_pred EEE
Q 016921 315 KAE 317 (380)
Q Consensus 315 ~~~ 317 (380)
.+.
T Consensus 224 tvD 226 (325)
T KOG2940|consen 224 TVD 226 (325)
T ss_pred eec
Confidence 654
No 138
>PRK00811 spermidine synthase; Provisional
Probab=99.20 E-value=1.2e-10 Score=107.25 Aligned_cols=104 Identities=18% Similarity=0.270 Sum_probs=82.7
Q ss_pred CCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcC--C--CCCeEEEEcCCCCC-CCCCCCccEEEe
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARG--L--ADKVSFQVGDALQQ-PFPDGQFDLVWS 232 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~-~~~v~giD~s~~~~~~a~~~~~~~~--~--~~~v~~~~~d~~~~-~~~~~~fD~V~~ 232 (380)
+.+||+||||+|..+..+++.. ..+|+++|+++.+++.|++.+.... . .++++++.+|+... ....++||+|++
T Consensus 77 p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvIi~ 156 (283)
T PRK00811 77 PKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVIIV 156 (283)
T ss_pred CCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEEEE
Confidence 7899999999999999998864 4689999999999999999876432 1 46899999998764 224578999998
Q ss_pred ccccCCCCC----HHHHHHHHHHhcCCCcEEEEE
Q 016921 233 MESGEHMPD----KSKFVSELARVTAPAGTIIIV 262 (380)
Q Consensus 233 ~~~l~~~~~----~~~~l~~~~r~LkpgG~l~~~ 262 (380)
...-.+.+. ..++++.+.+.|+|||.+++.
T Consensus 157 D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~ 190 (283)
T PRK00811 157 DSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQ 190 (283)
T ss_pred CCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 643332222 267889999999999998875
No 139
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=99.18 E-value=2.2e-10 Score=99.94 Aligned_cols=119 Identities=26% Similarity=0.407 Sum_probs=95.0
Q ss_pred HHHHHHHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEE
Q 016921 136 AAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQ 213 (380)
Q Consensus 136 ~~~~~~~~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~--~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~ 213 (380)
...-+++..+++... +.+||||||++|..+..+++.. +.+|+.+|+++...+.|++.+...|+.++|+++
T Consensus 31 ~~~g~lL~~l~~~~~--------~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~ 102 (205)
T PF01596_consen 31 PETGQLLQMLVRLTR--------PKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVI 102 (205)
T ss_dssp HHHHHHHHHHHHHHT---------SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEE
T ss_pred HHHHHHHHHHHHhcC--------CceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEE
Confidence 344456666665543 7789999999999999999876 689999999999999999999999998899999
Q ss_pred EcCCCCC-C-----CCCCCccEEEeccccCCCCCHHHHHHHHHHhcCCCcEEEEEecc
Q 016921 214 VGDALQQ-P-----FPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWC 265 (380)
Q Consensus 214 ~~d~~~~-~-----~~~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~~~ 265 (380)
.+|+.+. + .+.++||+|+....= .+....+..+.+.|+|||.+++-...
T Consensus 103 ~gda~~~l~~l~~~~~~~~fD~VFiDa~K---~~y~~y~~~~~~ll~~ggvii~DN~l 157 (205)
T PF01596_consen 103 EGDALEVLPELANDGEEGQFDFVFIDADK---RNYLEYFEKALPLLRPGGVIIADNVL 157 (205)
T ss_dssp ES-HHHHHHHHHHTTTTTSEEEEEEESTG---GGHHHHHHHHHHHEEEEEEEEEETTT
T ss_pred EeccHhhHHHHHhccCCCceeEEEEcccc---cchhhHHHHHhhhccCCeEEEEcccc
Confidence 9998763 1 123689999986532 35678899999999999999997643
No 140
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=99.18 E-value=4e-10 Score=110.73 Aligned_cols=104 Identities=18% Similarity=0.257 Sum_probs=84.5
Q ss_pred CCCEEEEECCCcChHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC--CCCCCccEEEec
Q 016921 158 RPKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP--FPDGQFDLVWSM 233 (380)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~--~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--~~~~~fD~V~~~ 233 (380)
++.+|||+|||+|..+..+++.. +.+|+++|+++.+++.++++++..|+. ++.++++|+.++. ++ ++||+|++.
T Consensus 250 ~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~-~v~~~~~D~~~~~~~~~-~~fD~Vl~D 327 (444)
T PRK14902 250 GGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLT-NIETKALDARKVHEKFA-EKFDKILVD 327 (444)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-eEEEEeCCcccccchhc-ccCCEEEEc
Confidence 47899999999999999999875 579999999999999999999988885 5999999998753 33 789999974
Q ss_pred c------ccCCCCC----------------HHHHHHHHHHhcCCCcEEEEEe
Q 016921 234 E------SGEHMPD----------------KSKFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 234 ~------~l~~~~~----------------~~~~l~~~~r~LkpgG~l~~~~ 263 (380)
- ++.+-++ ...+++.+.++|||||.|+.++
T Consensus 328 ~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvyst 379 (444)
T PRK14902 328 APCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYST 379 (444)
T ss_pred CCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEc
Confidence 2 1121111 1357999999999999999765
No 141
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=99.17 E-value=7.2e-10 Score=108.87 Aligned_cols=118 Identities=23% Similarity=0.373 Sum_probs=90.0
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEE
Q 016921 135 RAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQV 214 (380)
Q Consensus 135 ~~~~~~~~~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~ 214 (380)
+.....+++.++..+.+.+ +.+|||+|||+|.++..+++. +.+|+|+|+|+.|++.|++++...++ .+++|++
T Consensus 279 ~~~~e~l~~~vl~~l~~~~-----~~~VLDlgcGtG~~sl~la~~-~~~V~gvD~s~~al~~A~~n~~~~~~-~~v~~~~ 351 (443)
T PRK13168 279 AQVNQKMVARALEWLDPQP-----GDRVLDLFCGLGNFTLPLARQ-AAEVVGVEGVEAMVERARENARRNGL-DNVTFYH 351 (443)
T ss_pred HHHHHHHHHHHHHHhcCCC-----CCEEEEEeccCCHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHHHHcCC-CceEEEE
Confidence 3444567777777765443 789999999999999999987 68999999999999999999988877 4799999
Q ss_pred cCCCCC----CCCCCCccEEEeccccCCCCCHHHHHHHHHHhcCCCcEEEEEe
Q 016921 215 GDALQQ----PFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 215 ~d~~~~----~~~~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~ 263 (380)
+|+.+. ++.+++||+|++.---. .....+..+.+ ++|++.++++.
T Consensus 352 ~d~~~~l~~~~~~~~~fD~Vi~dPPr~---g~~~~~~~l~~-~~~~~ivyvSC 400 (443)
T PRK13168 352 ANLEEDFTDQPWALGGFDKVLLDPPRA---GAAEVMQALAK-LGPKRIVYVSC 400 (443)
T ss_pred eChHHhhhhhhhhcCCCCEEEECcCCc---ChHHHHHHHHh-cCCCeEEEEEe
Confidence 998653 24456899998742111 12355655555 68999888875
No 142
>PRK01581 speE spermidine synthase; Validated
Probab=99.14 E-value=5.7e-10 Score=104.06 Aligned_cols=105 Identities=18% Similarity=0.212 Sum_probs=79.3
Q ss_pred CCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHH--HH---HcCC-CCCeEEEEcCCCCC-CCCCCCccEE
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANAL--AA---ARGL-ADKVSFQVGDALQQ-PFPDGQFDLV 230 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~-~~~v~giD~s~~~~~~a~~~--~~---~~~~-~~~v~~~~~d~~~~-~~~~~~fD~V 230 (380)
+.+||+||||+|..+..+++.. ..+|+++|+++++++.|++. +. ...+ .++++++.+|+.+. ....++||+|
T Consensus 151 PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~YDVI 230 (374)
T PRK01581 151 PKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLYDVI 230 (374)
T ss_pred CCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCccEE
Confidence 6799999999999998888764 47999999999999999962 11 1111 36899999998873 3335789999
Q ss_pred EeccccC---CCC--CHHHHHHHHHHhcCCCcEEEEEe
Q 016921 231 WSMESGE---HMP--DKSKFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 231 ~~~~~l~---~~~--~~~~~l~~~~r~LkpgG~l~~~~ 263 (380)
++...-. ... -..++++.+++.|+|||.+++..
T Consensus 231 IvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs 268 (374)
T PRK01581 231 IIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQS 268 (374)
T ss_pred EEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEec
Confidence 9863211 011 12568999999999999988863
No 143
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=99.14 E-value=1.1e-09 Score=95.63 Aligned_cols=120 Identities=23% Similarity=0.391 Sum_probs=96.0
Q ss_pred HHHHHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEE-
Q 016921 138 QVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQV- 214 (380)
Q Consensus 138 ~~~~~~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~--~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~- 214 (380)
+-.++..+++.. .+.+|||||++.|..++.|+... ..+++.+|+++++.+.|++++++.|+.+++.++.
T Consensus 47 ~g~~L~~L~~~~--------~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~ 118 (219)
T COG4122 47 TGALLRLLARLS--------GPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLG 118 (219)
T ss_pred HHHHHHHHHHhc--------CCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEec
Confidence 344555555543 27899999999999999999987 4789999999999999999999999988899888
Q ss_pred cCCCCC-C-CCCCCccEEEeccccCCCCCHHHHHHHHHHhcCCCcEEEEEeccCCC
Q 016921 215 GDALQQ-P-FPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRD 268 (380)
Q Consensus 215 ~d~~~~-~-~~~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~ 268 (380)
+|+.+. . ...++||+|+.-..= .+...+++.+.++|+|||.+++-......
T Consensus 119 gdal~~l~~~~~~~fDliFIDadK---~~yp~~le~~~~lLr~GGliv~DNvl~~G 171 (219)
T COG4122 119 GDALDVLSRLLDGSFDLVFIDADK---ADYPEYLERALPLLRPGGLIVADNVLFGG 171 (219)
T ss_pred CcHHHHHHhccCCCccEEEEeCCh---hhCHHHHHHHHHHhCCCcEEEEeecccCC
Confidence 576553 2 346899999975422 23478999999999999999997765444
No 144
>PLN02476 O-methyltransferase
Probab=99.13 E-value=1.1e-09 Score=99.42 Aligned_cols=104 Identities=15% Similarity=0.168 Sum_probs=87.3
Q ss_pred CCEEEEECCCcChHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC-C-C----CCCCccEE
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ-P-F----PDGQFDLV 230 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~--~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~-~----~~~~fD~V 230 (380)
+.+|||||+|+|..+..++... +.+|+.+|.+++..+.|++.+++.|+.++++++.+|+.+. + + ..++||+|
T Consensus 119 ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~FD~V 198 (278)
T PLN02476 119 AERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSSYDFA 198 (278)
T ss_pred CCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCCCCEE
Confidence 7899999999999999999865 5689999999999999999999999988999999998663 2 1 13689999
Q ss_pred EeccccCCCCCHHHHHHHHHHhcCCCcEEEEEecc
Q 016921 231 WSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWC 265 (380)
Q Consensus 231 ~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~~~ 265 (380)
+.... -.+...+++.+.+.|+|||.+++-...
T Consensus 199 FIDa~---K~~Y~~y~e~~l~lL~~GGvIV~DNvL 230 (278)
T PLN02476 199 FVDAD---KRMYQDYFELLLQLVRVGGVIVMDNVL 230 (278)
T ss_pred EECCC---HHHHHHHHHHHHHhcCCCcEEEEecCc
Confidence 98642 134578899999999999998886543
No 145
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=99.12 E-value=4.5e-10 Score=97.57 Aligned_cols=103 Identities=30% Similarity=0.462 Sum_probs=82.8
Q ss_pred CEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC-C--CCCCCccEEEeccc
Q 016921 160 KNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ-P--FPDGQFDLVWSMES 235 (380)
Q Consensus 160 ~~vLDiGcGtG~~~~~l~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~--~~~~~fD~V~~~~~ 235 (380)
..+||||||.|.++..+|... +..++|+|+....+..+.+++...++ .|+.++++|+..+ . ++++++|.|+..+-
T Consensus 19 ~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l-~Nv~~~~~da~~~l~~~~~~~~v~~i~i~FP 97 (195)
T PF02390_consen 19 PLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGL-KNVRFLRGDARELLRRLFPPGSVDRIYINFP 97 (195)
T ss_dssp EEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTT-SSEEEEES-CTTHHHHHSTTTSEEEEEEES-
T ss_pred CeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcc-cceEEEEccHHHHHhhcccCCchheEEEeCC
Confidence 389999999999999999988 88999999999999999999988887 6999999999883 1 45789999998654
Q ss_pred cCCCCCH--------HHHHHHHHHhcCCCcEEEEEe
Q 016921 236 GEHMPDK--------SKFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 236 l~~~~~~--------~~~l~~~~r~LkpgG~l~~~~ 263 (380)
=-|.... ..++..++++|+|||.|.+.+
T Consensus 98 DPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~T 133 (195)
T PF02390_consen 98 DPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFAT 133 (195)
T ss_dssp ----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEe
Confidence 3333211 579999999999999999976
No 146
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=99.11 E-value=8.6e-10 Score=99.17 Aligned_cols=107 Identities=22% Similarity=0.255 Sum_probs=83.8
Q ss_pred CCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCC-----CeEEEEcCCCC------CCCCCCC
Q 016921 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLAD-----KVSFQVGDALQ------QPFPDGQ 226 (380)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~-----~v~~~~~d~~~------~~~~~~~ 226 (380)
++..++|+|||-|+-++..-+..-..++|+||+...++.|+++........ .+.|+.+|... +++++.+
T Consensus 117 ~~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~dp~ 196 (389)
T KOG1975|consen 117 RGDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFKDPR 196 (389)
T ss_pred cccccceeccCCcccHhHhhhhcccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccCCCCC
Confidence 378899999999988887766544589999999999999999886532111 36889998765 2344556
Q ss_pred ccEEEeccccCCC-CC---HHHHHHHHHHhcCCCcEEEEEec
Q 016921 227 FDLVWSMESGEHM-PD---KSKFVSELARVTAPAGTIIIVTW 264 (380)
Q Consensus 227 fD~V~~~~~l~~~-~~---~~~~l~~~~r~LkpgG~l~~~~~ 264 (380)
||+|-|.+++|+. .+ ...+++++.+.|||||+++-+.+
T Consensus 197 fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgTiP 238 (389)
T KOG1975|consen 197 FDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGTIP 238 (389)
T ss_pred cceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEecC
Confidence 9999999999876 22 35689999999999999988763
No 147
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=99.09 E-value=6.1e-10 Score=106.96 Aligned_cols=105 Identities=13% Similarity=0.091 Sum_probs=82.0
Q ss_pred CCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCC-CCeEEEEcCCCCCC--C--CCCCccEEEec
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLA-DKVSFQVGDALQQP--F--PDGQFDLVWSM 233 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~-~~v~~~~~d~~~~~--~--~~~~fD~V~~~ 233 (380)
+.+|||+|||+|.++..++.....+|+++|+|+.+++.|++++..+++. .+++++++|+.+.- + ..++||+|++.
T Consensus 221 g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlVilD 300 (396)
T PRK15128 221 NKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIVMD 300 (396)
T ss_pred CCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEEEEC
Confidence 7899999999999998766542348999999999999999999998885 47999999987641 1 24689999986
Q ss_pred cccCCC---------CCHHHHHHHHHHhcCCCcEEEEEe
Q 016921 234 ESGEHM---------PDKSKFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 234 ~~l~~~---------~~~~~~l~~~~r~LkpgG~l~~~~ 263 (380)
--...- .+...++..+.++|+|||.|+++.
T Consensus 301 PP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~s 339 (396)
T PRK15128 301 PPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFS 339 (396)
T ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence 221110 123456667899999999999865
No 148
>PLN02366 spermidine synthase
Probab=99.07 E-value=1.3e-09 Score=101.01 Aligned_cols=104 Identities=23% Similarity=0.391 Sum_probs=81.7
Q ss_pred CCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHc--CC-CCCeEEEEcCCCCC--CCCCCCccEEEe
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAAR--GL-ADKVSFQVGDALQQ--PFPDGQFDLVWS 232 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~-~~~v~giD~s~~~~~~a~~~~~~~--~~-~~~v~~~~~d~~~~--~~~~~~fD~V~~ 232 (380)
+.+||+||||.|..+..+++.. ..+|+.+|+++.+++.+++.+... ++ .++++++.+|+... ..++++||+|++
T Consensus 92 pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDvIi~ 171 (308)
T PLN02366 92 PKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDAIIV 171 (308)
T ss_pred CCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCEEEE
Confidence 7899999999999999998864 368999999999999999987653 22 35899999997553 123578999998
Q ss_pred ccccCCCCC----HHHHHHHHHHhcCCCcEEEEE
Q 016921 233 MESGEHMPD----KSKFVSELARVTAPAGTIIIV 262 (380)
Q Consensus 233 ~~~l~~~~~----~~~~l~~~~r~LkpgG~l~~~ 262 (380)
...-.+.+. ...+++.+.+.|+|||.++..
T Consensus 172 D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q 205 (308)
T PLN02366 172 DSSDPVGPAQELFEKPFFESVARALRPGGVVCTQ 205 (308)
T ss_pred cCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEC
Confidence 543332221 247899999999999998764
No 149
>PLN02672 methionine S-methyltransferase
Probab=99.07 E-value=3.6e-09 Score=111.68 Aligned_cols=104 Identities=26% Similarity=0.288 Sum_probs=79.7
Q ss_pred CCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCC---------------CCCeEEEEcCCCCCCC
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGL---------------ADKVSFQVGDALQQPF 222 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~---------------~~~v~~~~~d~~~~~~ 222 (380)
+.+|||+|||+|..++.+++.. ..+|+|+|+|+.+++.|++++..+++ ..+++|+++|+.+...
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~ 198 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCR 198 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhcc
Confidence 5689999999999999999987 57999999999999999999987543 2479999999876431
Q ss_pred C-CCCccEEEecc--c------------cCC------------C--------CC----HHHHHHHHHHhcCCCcEEEEE
Q 016921 223 P-DGQFDLVWSME--S------------GEH------------M--------PD----KSKFVSELARVTAPAGTIIIV 262 (380)
Q Consensus 223 ~-~~~fD~V~~~~--~------------l~~------------~--------~~----~~~~l~~~~r~LkpgG~l~~~ 262 (380)
. ..+||+|+++= . ..| . .| ..+++.++.++|+|||.+++-
T Consensus 199 ~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~lE 277 (1082)
T PLN02672 199 DNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIFN 277 (1082)
T ss_pred ccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEEE
Confidence 1 13699999841 1 000 0 11 146778888999999988874
No 150
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=99.07 E-value=1.3e-09 Score=95.00 Aligned_cols=125 Identities=17% Similarity=0.225 Sum_probs=95.6
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC
Q 016921 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ 220 (380)
Q Consensus 141 ~~~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~ 220 (380)
-++.+++.+...+ ....|-|+|||-+.++. .....|+.+|+-+ .+-.++.+|+.+.
T Consensus 167 Pld~ii~~ik~r~----~~~vIaD~GCGEakiA~----~~~~kV~SfDL~a----------------~~~~V~~cDm~~v 222 (325)
T KOG3045|consen 167 PLDVIIRKIKRRP----KNIVIADFGCGEAKIAS----SERHKVHSFDLVA----------------VNERVIACDMRNV 222 (325)
T ss_pred hHHHHHHHHHhCc----CceEEEecccchhhhhh----ccccceeeeeeec----------------CCCceeeccccCC
Confidence 3455555554332 46789999999987775 2245799999854 3456789999999
Q ss_pred CCCCCCccEEEeccccCCCCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHH
Q 016921 221 PFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTA 300 (380)
Q Consensus 221 ~~~~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (380)
|+++++.|+++++.+|.. .|...++.++.|+|++||.+.|.+... ++.+..
T Consensus 223 Pl~d~svDvaV~CLSLMg-tn~~df~kEa~RiLk~gG~l~IAEv~S----------------------------Rf~dv~ 273 (325)
T KOG3045|consen 223 PLEDESVDVAVFCLSLMG-TNLADFIKEANRILKPGGLLYIAEVKS----------------------------RFSDVK 273 (325)
T ss_pred cCccCcccEEEeeHhhhc-ccHHHHHHHHHHHhccCceEEEEehhh----------------------------hcccHH
Confidence 999999999998776643 588999999999999999999998421 133556
Q ss_pred HHHHHHHhCCCcEEEEEe
Q 016921 301 DYVKLLQSLSLEDIKAED 318 (380)
Q Consensus 301 ~~~~ll~~aGf~~v~~~~ 318 (380)
.+...|...||.+.....
T Consensus 274 ~f~r~l~~lGF~~~~~d~ 291 (325)
T KOG3045|consen 274 GFVRALTKLGFDVKHKDV 291 (325)
T ss_pred HHHHHHHHcCCeeeehhh
Confidence 788899999999776543
No 151
>PRK03612 spermidine synthase; Provisional
Probab=99.07 E-value=1.1e-09 Score=109.29 Aligned_cols=106 Identities=24% Similarity=0.293 Sum_probs=81.1
Q ss_pred CCCEEEEECCCcChHHHHHHHHcC-CEEEEEeCCHHHHHHHHHH--HHHc---CC-CCCeEEEEcCCCCC-CCCCCCccE
Q 016921 158 RPKNVVDVGCGIGGSSRYLAKKFG-AKCQGITLSPVQAQRANAL--AAAR---GL-ADKVSFQVGDALQQ-PFPDGQFDL 229 (380)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~~-~~v~giD~s~~~~~~a~~~--~~~~---~~-~~~v~~~~~d~~~~-~~~~~~fD~ 229 (380)
++.+|||||||+|..+..++++.. .+|+++|+++++++.++++ +... .. .++++++.+|+.+. ...+++||+
T Consensus 297 ~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~fDv 376 (521)
T PRK03612 297 RPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKFDV 376 (521)
T ss_pred CCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCCCE
Confidence 378999999999999999987543 7999999999999999983 2221 11 25899999998773 223478999
Q ss_pred EEeccccCCCCC-----HHHHHHHHHHhcCCCcEEEEEe
Q 016921 230 VWSMESGEHMPD-----KSKFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 230 V~~~~~l~~~~~-----~~~~l~~~~r~LkpgG~l~~~~ 263 (380)
|++...-...+. ..++++.+.+.|||||.+++..
T Consensus 377 Ii~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~ 415 (521)
T PRK03612 377 IIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQS 415 (521)
T ss_pred EEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEec
Confidence 998754332221 1468999999999999998864
No 152
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=99.06 E-value=9.1e-10 Score=98.35 Aligned_cols=190 Identities=19% Similarity=0.268 Sum_probs=109.6
Q ss_pred hhhHHHhhcccccccc----------cCCCCCCCcccHHHHHHHHHHHHHHHcCCCCCCCCCCCEEEEECCC--cChHHH
Q 016921 107 SSLWEDIWGDHMHHGF----------YEPDSSVSVSDHRAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCG--IGGSSR 174 (380)
Q Consensus 107 ~~~y~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~vLDiGcG--tG~~~~ 174 (380)
+++|+.++|++.|+.. ..+.........|..+.+.++.+....++. ..|||||| |-....
T Consensus 15 ARvYDy~LGGkdnf~vDR~~a~~~~~~~P~~~~~ar~nR~Fl~RaVr~la~~~GIr--------QFLDlGsGlPT~~nvH 86 (267)
T PF04672_consen 15 ARVYDYLLGGKDNFAVDREAAERLLAAAPEIREAARANRAFLRRAVRYLAEEAGIR--------QFLDLGSGLPTAGNVH 86 (267)
T ss_dssp HHHHHHHCT-SS--HHHHHHHHHHHHHSTTHHHHHHHHHHHHHHHHHHHHCTT-----------EEEEET--S--SS-HH
T ss_pred HHHHHHHhCCccCCHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCcc--------eEEEcccCCCCCCCHh
Confidence 5666666776666431 112212223345666666666666655554 49999999 666788
Q ss_pred HHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC--CC----CCCcc-----EEEeccccCCCC-
Q 016921 175 YLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP--FP----DGQFD-----LVWSMESGEHMP- 240 (380)
Q Consensus 175 ~l~~~~--~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--~~----~~~fD-----~V~~~~~l~~~~- 240 (380)
.++++. .++|+.+|++|..+..++..+..... .+..++++|+.+.. +. .+-+| .|++..++||++
T Consensus 87 evAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~-g~t~~v~aD~r~p~~iL~~p~~~~~lD~~rPVavll~~vLh~v~D 165 (267)
T PF04672_consen 87 EVAQRVAPDARVVYVDNDPVVLAHARALLADNPR-GRTAYVQADLRDPEAILAHPEVRGLLDFDRPVAVLLVAVLHFVPD 165 (267)
T ss_dssp HHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TT-SEEEEEE--TT-HHHHHCSHHHHCC--TTS--EEEECT-GGGS-C
T ss_pred HHHHhhCCCceEEEECCCchHHHHHHhhhcCCCC-ccEEEEeCCCCCHHHHhcCHHHHhcCCCCCCeeeeeeeeeccCCC
Confidence 888876 78999999999999999998865421 24899999998741 00 12233 477788999995
Q ss_pred --CHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCC-CCCCHHHHHHHHHhCCCcEEE
Q 016921 241 --DKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLP-AWCSTADYVKLLQSLSLEDIK 315 (380)
Q Consensus 241 --~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ll~~aGf~~v~ 315 (380)
++..+++.+...|.||.+|+++....... + .....+...+.....+ .+.+.+++..+|. ||+.++
T Consensus 166 ~~dp~~iv~~l~d~lapGS~L~ish~t~d~~-p-------~~~~~~~~~~~~~~~~~~~Rs~~ei~~~f~--g~elve 233 (267)
T PF04672_consen 166 DDDPAGIVARLRDALAPGSYLAISHATDDGA-P-------ERAEALEAVYAQAGSPGRPRSREEIAAFFD--GLELVE 233 (267)
T ss_dssp GCTHHHHHHHHHCCS-TT-EEEEEEEB-TTS-H-------HHHHHHHHHHHHCCS----B-HHHHHHCCT--TSEE-T
T ss_pred ccCHHHHHHHHHHhCCCCceEEEEecCCCCC-H-------HHHHHHHHHHHcCCCCceecCHHHHHHHcC--CCccCC
Confidence 47899999999999999999998754321 1 1112222222222222 3578999999998 998763
No 153
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=99.05 E-value=2.3e-09 Score=100.57 Aligned_cols=118 Identities=24% Similarity=0.247 Sum_probs=84.6
Q ss_pred HHHHHHHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEc
Q 016921 136 AAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVG 215 (380)
Q Consensus 136 ~~~~~~~~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~ 215 (380)
.....+++.+.+.+... ++.+|||+|||+|.++..+++. +.+|+|+|+++.+++.|+++++..++ .+++|+++
T Consensus 156 ~~~~~l~~~v~~~l~~~-----~~~~VLDl~cG~G~~sl~la~~-~~~V~gvD~s~~av~~A~~n~~~~~l-~~v~~~~~ 228 (315)
T PRK03522 156 AVAAQLYATARDWVREL-----PPRSMWDLFCGVGGFGLHCATP-GMQLTGIEISAEAIACAKQSAAELGL-TNVQFQAL 228 (315)
T ss_pred HHHHHHHHHHHHHHHhc-----CCCEEEEccCCCCHHHHHHHhc-CCEEEEEeCCHHHHHHHHHHHHHcCC-CceEEEEc
Confidence 33344555544444322 2689999999999999999986 78999999999999999999998888 58999999
Q ss_pred CCCCCCC-CCCCccEEEeccccCCCCCHHHHHHHHHHhcCCCcEEEEEe
Q 016921 216 DALQQPF-PDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 216 d~~~~~~-~~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~ 263 (380)
|+.++.. ..+.||+|++.---. .....+.++...++|++.++++.
T Consensus 229 D~~~~~~~~~~~~D~Vv~dPPr~---G~~~~~~~~l~~~~~~~ivyvsc 274 (315)
T PRK03522 229 DSTQFATAQGEVPDLVLVNPPRR---GIGKELCDYLSQMAPRFILYSSC 274 (315)
T ss_pred CHHHHHHhcCCCCeEEEECCCCC---CccHHHHHHHHHcCCCeEEEEEC
Confidence 9987532 235799999862210 11222333344467888777765
No 154
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=99.05 E-value=5.1e-09 Score=102.66 Aligned_cols=119 Identities=18% Similarity=0.296 Sum_probs=88.4
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEE
Q 016921 135 RAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQV 214 (380)
Q Consensus 135 ~~~~~~~~~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~ 214 (380)
......+++.++..+.+.. +.+|||+|||+|.++..+++. ..+|+|+|+++.+++.|++++...++ .+++|+.
T Consensus 274 ~~~~~~l~~~~~~~l~~~~-----~~~vLDl~cG~G~~sl~la~~-~~~V~~vE~~~~av~~a~~n~~~~~~-~nv~~~~ 346 (431)
T TIGR00479 274 SGQNEKLVDRALEALELQG-----EELVVDAYCGVGTFTLPLAKQ-AKSVVGIEVVPESVEKAQQNAELNGI-ANVEFLA 346 (431)
T ss_pred HHHHHHHHHHHHHHhccCC-----CCEEEEcCCCcCHHHHHHHHh-CCEEEEEEcCHHHHHHHHHHHHHhCC-CceEEEe
Confidence 4445556666666665443 689999999999999999987 67999999999999999999988887 5899999
Q ss_pred cCCCCC----CCCCCCccEEEeccccCCCCCHHHHHHHHHHhcCCCcEEEEEe
Q 016921 215 GDALQQ----PFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 215 ~d~~~~----~~~~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~ 263 (380)
+|+.+. ++.+++||+|++.--= ..-...+++.+.+ ++|++.++++.
T Consensus 347 ~d~~~~l~~~~~~~~~~D~vi~dPPr--~G~~~~~l~~l~~-l~~~~ivyvsc 396 (431)
T TIGR00479 347 GTLETVLPKQPWAGQIPDVLLLDPPR--KGCAAEVLRTIIE-LKPERIVYVSC 396 (431)
T ss_pred CCHHHHHHHHHhcCCCCCEEEECcCC--CCCCHHHHHHHHh-cCCCEEEEEcC
Confidence 998753 2335679999863221 1112456665554 88988777753
No 155
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=99.03 E-value=2.1e-08 Score=93.14 Aligned_cols=176 Identities=15% Similarity=0.190 Sum_probs=104.7
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHc-CCCCCeEE
Q 016921 135 RAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAAR-GLADKVSF 212 (380)
Q Consensus 135 ~~~~~~~~~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~-~~~v~giD~s~~~~~~a~~~~~~~-~~~~~v~~ 212 (380)
|......+..++........+..++.+|||||||+|.....++.+. +.+++|+|+++.+++.|++++... ++..++.+
T Consensus 91 R~~Yi~~l~dll~~~~~~~~p~~~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~ 170 (321)
T PRK11727 91 RADYIHHLADLLAEDNGGVIPRGANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAIRL 170 (321)
T ss_pred HHHHHHHHHHHhcccccccCCCCCCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEE
Confidence 4444445555554321111222347899999999998888877665 789999999999999999999998 78888888
Q ss_pred EE-cCCCCCC----CCCCCccEEEeccccCCCCCH-----HHHHHHH----------------HHhcCCCcEEEEEeccC
Q 016921 213 QV-GDALQQP----FPDGQFDLVWSMESGEHMPDK-----SKFVSEL----------------ARVTAPAGTIIIVTWCH 266 (380)
Q Consensus 213 ~~-~d~~~~~----~~~~~fD~V~~~~~l~~~~~~-----~~~l~~~----------------~r~LkpgG~l~~~~~~~ 266 (380)
.. .|...+. .+++.||+|+|+=-++.-.+. ..-.+.+ .+++.+||.+.+...
T Consensus 171 ~~~~~~~~i~~~i~~~~~~fDlivcNPPf~~s~~ea~~~~~rk~r~~ar~~~~~~~l~f~g~~~EL~~~GGe~~fi~~-- 248 (321)
T PRK11727 171 RLQKDSKAIFKGIIHKNERFDATLCNPPFHASAAEARAGSQRKLRNLGLNKDKKKVLNFGGQQAELWCEGGEVAFIKR-- 248 (321)
T ss_pred EEccchhhhhhcccccCCceEEEEeCCCCcCcchhhccchhhHHhhhhccCCCccccCCcchhhheeeCCcEeeeehH--
Confidence 64 3333321 246789999997543322111 1122222 233445565444331
Q ss_pred CCCCCCccccchHHHHHHHHHhh-ccCCCCCCCHHHHHHHHHhCCCcEEEEEecCC
Q 016921 267 RDLAPSEESLQPWEQELLKKICD-AYYLPAWCSTADYVKLLQSLSLEDIKAEDWSQ 321 (380)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ll~~aGf~~v~~~~~~~ 321 (380)
+............- ...+..--+.+.+.+.|++.|...+.+.++..
T Consensus 249 ---------mi~eS~~~~~~~gwftsmv~kk~~l~~l~~~L~~~~~~~~~~~e~~q 295 (321)
T PRK11727 249 ---------MIEESKAFAKQVLWFTSLVSKKENLPPLYRALKKVGAVEVKTIEMAQ 295 (321)
T ss_pred ---------hhHHHHHHHhhCcEEEEEeeccCCHHHHHHHHHHcCCceEEEEEEeC
Confidence 11111111111100 00111234789999999999998777776644
No 156
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=99.03 E-value=2.6e-09 Score=97.95 Aligned_cols=104 Identities=18% Similarity=0.279 Sum_probs=80.1
Q ss_pred CCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcC--C-CCCeEEEEcCCCCC-CCCCCCccEEEec
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARG--L-ADKVSFQVGDALQQ-PFPDGQFDLVWSM 233 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~-~~~v~giD~s~~~~~~a~~~~~~~~--~-~~~v~~~~~d~~~~-~~~~~~fD~V~~~ 233 (380)
+.+||+||||+|..+..+++.. ..+++++|+++.+++.+++.+...+ . .++++++.+|+... ....++||+|++.
T Consensus 73 p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi~D 152 (270)
T TIGR00417 73 PKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVIIVD 152 (270)
T ss_pred CCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEEEe
Confidence 5699999999999999888765 4689999999999999999875432 1 24788888887552 2224789999986
Q ss_pred cccCCCC--C--HHHHHHHHHHhcCCCcEEEEE
Q 016921 234 ESGEHMP--D--KSKFVSELARVTAPAGTIIIV 262 (380)
Q Consensus 234 ~~l~~~~--~--~~~~l~~~~r~LkpgG~l~~~ 262 (380)
.....-+ + ..++++.+.+.|+|||.+++.
T Consensus 153 ~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~ 185 (270)
T TIGR00417 153 STDPVGPAETLFTKEFYELLKKALNEDGIFVAQ 185 (270)
T ss_pred CCCCCCcccchhHHHHHHHHHHHhCCCcEEEEc
Confidence 5422211 1 357889999999999999986
No 157
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=99.03 E-value=2.6e-09 Score=95.73 Aligned_cols=116 Identities=18% Similarity=0.250 Sum_probs=92.7
Q ss_pred HHHHHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEc
Q 016921 138 QVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVG 215 (380)
Q Consensus 138 ~~~~~~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~--~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~ 215 (380)
..+++..+++... ..+|||||+++|..++.++... +.+|+.+|.+++..+.|++.+...|+.++|+++.+
T Consensus 67 ~g~lL~~l~~~~~--------ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G 138 (247)
T PLN02589 67 EGQFLNMLLKLIN--------AKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREG 138 (247)
T ss_pred HHHHHHHHHHHhC--------CCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEec
Confidence 3445555555443 6789999999999999999865 57999999999999999999999999999999999
Q ss_pred CCCCC-C-C-----CCCCccEEEeccccCCCCCHHHHHHHHHHhcCCCcEEEEEec
Q 016921 216 DALQQ-P-F-----PDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (380)
Q Consensus 216 d~~~~-~-~-----~~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~~ 264 (380)
|+.+. + + ..++||+|++-.- -......++.+.+.|+|||.|++-..
T Consensus 139 ~a~e~L~~l~~~~~~~~~fD~iFiDad---K~~Y~~y~~~~l~ll~~GGviv~DNv 191 (247)
T PLN02589 139 PALPVLDQMIEDGKYHGTFDFIFVDAD---KDNYINYHKRLIDLVKVGGVIGYDNT 191 (247)
T ss_pred cHHHHHHHHHhccccCCcccEEEecCC---HHHhHHHHHHHHHhcCCCeEEEEcCC
Confidence 98763 2 1 1368999998643 12346788888999999999888543
No 158
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=99.02 E-value=4.6e-09 Score=90.94 Aligned_cols=146 Identities=24% Similarity=0.449 Sum_probs=95.0
Q ss_pred CCCEEEEECCCcChHHHHHHHHcC-CEEEEEeCCHHHHHHHHHHHHHc-----C--------------------------
Q 016921 158 RPKNVVDVGCGIGGSSRYLAKKFG-AKCQGITLSPVQAQRANALAAAR-----G-------------------------- 205 (380)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~~-~~v~giD~s~~~~~~a~~~~~~~-----~-------------------------- 205 (380)
.+..+|||||..|.++..+++.++ ..|.|+||++..++.|++.+..- .
T Consensus 58 ~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~~a~ 137 (288)
T KOG2899|consen 58 EPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEADRAF 137 (288)
T ss_pred CcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCccccccccccccccccccccc
Confidence 377899999999999999999984 57999999999999999876321 0
Q ss_pred ---CCCCeEEE-------EcCCCCCCCCCCCccEEEeccccCCC----CC--HHHHHHHHHHhcCCCcEEEEEeccCCCC
Q 016921 206 ---LADKVSFQ-------VGDALQQPFPDGQFDLVWSMESGEHM----PD--KSKFVSELARVTAPAGTIIIVTWCHRDL 269 (380)
Q Consensus 206 ---~~~~v~~~-------~~d~~~~~~~~~~fD~V~~~~~l~~~----~~--~~~~l~~~~r~LkpgG~l~~~~~~~~~~ 269 (380)
++.++.|. ..|+. .+....||+|+|..+--++ .| ...+++++.++|.|||+|++--
T Consensus 138 t~~~p~n~~f~~~n~vle~~dfl--~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvvEP------ 209 (288)
T KOG2899|consen 138 TTDFPDNVWFQKENYVLESDDFL--DMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVVEP------ 209 (288)
T ss_pred cccCCcchhcccccEEEecchhh--hhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEEcC------
Confidence 01111111 11111 2335689999987665444 22 4689999999999999999843
Q ss_pred CCCccccchHHHHHHHHHhhccCCCCCCCHHHHHHHHHhC--CCcEE
Q 016921 270 APSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSL--SLEDI 314 (380)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~a--Gf~~v 314 (380)
.....+.... .....+...+ ..-+..++.+..+|.+. ||+-+
T Consensus 210 -QpWksY~kaa-r~~e~~~~ny-~~i~lkp~~f~~~l~q~~vgle~~ 253 (288)
T KOG2899|consen 210 -QPWKSYKKAA-RRSEKLAANY-FKIFLKPEDFEDWLNQIVVGLESV 253 (288)
T ss_pred -CchHHHHHHH-HHHHHhhcCc-cceecCHHHHHhhhhhhhhheeee
Confidence 1112222211 1222222222 23356789999998876 55543
No 159
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=99.01 E-value=1.3e-07 Score=85.36 Aligned_cols=165 Identities=20% Similarity=0.225 Sum_probs=110.0
Q ss_pred HHHHHHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHH---cC--------
Q 016921 137 AQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAA---RG-------- 205 (380)
Q Consensus 137 ~~~~~~~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~---~~-------- 205 (380)
....+++.+-...+.. .....+.+||--|||.|.++..+|.. |..+.|.|.|--|+-..+-.+.. .+
T Consensus 36 ~~~~I~~~L~~~~p~~-~~~~~~~~VLVPGsGLGRLa~Eia~~-G~~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~ 113 (270)
T PF07942_consen 36 CYSPILDELESLFPPA-GSDRSKIRVLVPGSGLGRLAWEIAKL-GYAVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFV 113 (270)
T ss_pred HHHHHHHHHHHhhccc-ccCCCccEEEEcCCCcchHHHHHhhc-cceEEEEEchHHHHHHHHHHHcccCCCCcEEEecce
Confidence 3344555544444321 11234689999999999999999998 89999999999997554443321 00
Q ss_pred ----------------------------CCCCeEEEEcCCCCCCCCC---CCccEEEeccccCCCCCHHHHHHHHHHhcC
Q 016921 206 ----------------------------LADKVSFQVGDALQQPFPD---GQFDLVWSMESGEHMPDKSKFVSELARVTA 254 (380)
Q Consensus 206 ----------------------------~~~~v~~~~~d~~~~~~~~---~~fD~V~~~~~l~~~~~~~~~l~~~~r~Lk 254 (380)
.+.++....+|+.+.-.++ ++||.|+..+.+.-.++.-..++.+.++||
T Consensus 114 ~~~sn~~~~~dqlr~v~iPDv~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFIDTA~Ni~~Yi~tI~~lLk 193 (270)
T PF07942_consen 114 HSFSNQKSREDQLRPVRIPDVDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFIDTAENIIEYIETIEHLLK 193 (270)
T ss_pred ecccCCCCHHHhCCceEeCCcCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEeechHHHHHHHHHHHHHhc
Confidence 0124566667766653333 799999999888777888999999999999
Q ss_pred CCcEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCcEEEEEe
Q 016921 255 PAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAED 318 (380)
Q Consensus 255 pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v~~~~ 318 (380)
|||..+-..+-.-...+.. ......+. .+.+++..++++.||+++..+.
T Consensus 194 pgG~WIN~GPLlyh~~~~~-------------~~~~~sve--Ls~eEi~~l~~~~GF~~~~~~~ 242 (270)
T PF07942_consen 194 PGGYWINFGPLLYHFEPMS-------------IPNEMSVE--LSLEEIKELIEKLGFEIEKEES 242 (270)
T ss_pred cCCEEEecCCccccCCCCC-------------CCCCcccC--CCHHHHHHHHHHCCCEEEEEEE
Confidence 9996554432111111100 00011122 6889999999999999987654
No 160
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=99.00 E-value=1.3e-08 Score=88.44 Aligned_cols=103 Identities=14% Similarity=0.056 Sum_probs=78.2
Q ss_pred CCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC-CCCCCCccEEEeccccC
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ-PFPDGQFDLVWSMESGE 237 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~~~~fD~V~~~~~l~ 237 (380)
+.+|||+|||+|.++..++.+...+|+++|+++..++.++++++..++ .++.++.+|+.+. +...++||+|++.=-..
T Consensus 54 ~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~~Nl~~~~~-~~v~~~~~D~~~~l~~~~~~fDlV~~DPPy~ 132 (199)
T PRK10909 54 DARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLIKNLATLKA-GNARVVNTNALSFLAQPGTPHNVVFVDPPFR 132 (199)
T ss_pred CCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCC-CcEEEEEchHHHHHhhcCCCceEEEECCCCC
Confidence 679999999999999876555457999999999999999999988876 4799999998763 22245799999864421
Q ss_pred CCCCHHHHHHHHHHh--cCCCcEEEEEe
Q 016921 238 HMPDKSKFVSELARV--TAPAGTIIIVT 263 (380)
Q Consensus 238 ~~~~~~~~l~~~~r~--LkpgG~l~~~~ 263 (380)
-.-...+++.+... |+|+|.+++..
T Consensus 133 -~g~~~~~l~~l~~~~~l~~~~iv~ve~ 159 (199)
T PRK10909 133 -KGLLEETINLLEDNGWLADEALIYVES 159 (199)
T ss_pred -CChHHHHHHHHHHCCCcCCCcEEEEEe
Confidence 12234555655553 78989888865
No 161
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=98.99 E-value=2.6e-09 Score=91.17 Aligned_cols=105 Identities=21% Similarity=0.233 Sum_probs=74.9
Q ss_pred CCCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcC--CCCCeEEEEcCCCCCC----CCCCCccEE
Q 016921 158 RPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARG--LADKVSFQVGDALQQP----FPDGQFDLV 230 (380)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~-~~~v~giD~s~~~~~~a~~~~~~~~--~~~~v~~~~~d~~~~~----~~~~~fD~V 230 (380)
++.+|||||||+|..++.++... ..+|+..|.++ .++..+.++..++ ...++.+...|..+.. ...++||+|
T Consensus 45 ~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D~I 123 (173)
T PF10294_consen 45 RGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSFDVI 123 (173)
T ss_dssp TTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSBSEE
T ss_pred CCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHhccccccccccCcEEEecCcccccccccccCCEE
Confidence 48899999999999999999873 78999999999 8888988887765 5567888888876521 234689999
Q ss_pred EeccccCCCCCHHHHHHHHHHhcCCCcEEEEEe
Q 016921 231 WSMESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 231 ~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~ 263 (380)
++..+++.-.....+++.+.++|+++|.+++..
T Consensus 124 lasDv~Y~~~~~~~L~~tl~~ll~~~~~vl~~~ 156 (173)
T PF10294_consen 124 LASDVLYDEELFEPLVRTLKRLLKPNGKVLLAY 156 (173)
T ss_dssp EEES--S-GGGHHHHHHHHHHHBTT-TTEEEEE
T ss_pred EEecccchHHHHHHHHHHHHHHhCCCCEEEEEe
Confidence 999999987778999999999999999977765
No 162
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=98.99 E-value=1.5e-09 Score=99.36 Aligned_cols=103 Identities=23% Similarity=0.297 Sum_probs=86.7
Q ss_pred CCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEEeccccC
Q 016921 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGE 237 (380)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~ 237 (380)
++..|||||||||.++...|+....+|+++|-|..+ +.|++.+..+++...|+++.+.++++.+|.+++|+|++-++-+
T Consensus 60 ~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~ia-~~a~~iv~~N~~~~ii~vi~gkvEdi~LP~eKVDiIvSEWMGy 138 (346)
T KOG1499|consen 60 KDKTVLDVGCGTGILSMFAAKAGARKVYAVEASSIA-DFARKIVKDNGLEDVITVIKGKVEDIELPVEKVDIIVSEWMGY 138 (346)
T ss_pred CCCEEEEcCCCccHHHHHHHHhCcceEEEEechHHH-HHHHHHHHhcCccceEEEeecceEEEecCccceeEEeehhhhH
Confidence 489999999999999999999866789999998766 9999999999998889999999999877789999999866554
Q ss_pred CC---CCHHHHHHHHHHhcCCCcEEEE
Q 016921 238 HM---PDKSKFVSELARVTAPAGTIII 261 (380)
Q Consensus 238 ~~---~~~~~~l~~~~r~LkpgG~l~~ 261 (380)
.+ .-.+.++-.=-+.|+|||.++=
T Consensus 139 ~Ll~EsMldsVl~ARdkwL~~~G~i~P 165 (346)
T KOG1499|consen 139 FLLYESMLDSVLYARDKWLKEGGLIYP 165 (346)
T ss_pred HHHHhhhhhhhhhhhhhccCCCceEcc
Confidence 44 2345666667789999998753
No 163
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=98.97 E-value=2.3e-09 Score=92.83 Aligned_cols=106 Identities=24% Similarity=0.375 Sum_probs=70.7
Q ss_pred CCCEEEEECCCcCh----HHHHHHHHc------CCEEEEEeCCHHHHHHHHHHHH----HcC------------------
Q 016921 158 RPKNVVDVGCGIGG----SSRYLAKKF------GAKCQGITLSPVQAQRANALAA----ARG------------------ 205 (380)
Q Consensus 158 ~~~~vLDiGcGtG~----~~~~l~~~~------~~~v~giD~s~~~~~~a~~~~~----~~~------------------ 205 (380)
+..+|+..||+||. ++..+.+.. ..+|+|+|+|+.+++.|++-.- -.+
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~ 110 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY 110 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence 47899999999998 334444411 2589999999999999987210 001
Q ss_pred -----CCCCeEEEEcCCCCCCCCCCCccEEEeccccCCCCC--HHHHHHHHHHhcCCCcEEEEEe
Q 016921 206 -----LADKVSFQVGDALQQPFPDGQFDLVWSMESGEHMPD--KSKFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 206 -----~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~~--~~~~l~~~~r~LkpgG~l~~~~ 263 (380)
+-.+|.|...|+.+.+.+.+.||+|+|.+++.++.. ..++++.+++.|+|||+|++..
T Consensus 111 ~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~lG~ 175 (196)
T PF01739_consen 111 RVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYLFLGH 175 (196)
T ss_dssp TE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEEEE-T
T ss_pred eEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEEEEec
Confidence 114689999999884335689999999999999964 4789999999999999999974
No 164
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=98.97 E-value=1.3e-08 Score=89.73 Aligned_cols=125 Identities=16% Similarity=0.154 Sum_probs=91.6
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEE
Q 016921 134 HRAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSF 212 (380)
Q Consensus 134 ~~~~~~~~~~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~ 212 (380)
..++....++.+-+.... .+..|||+|||+|..+..++..+ .+.|+++|.|+.++..|.+++...++.+++.+
T Consensus 130 TEE~V~~Vid~~~~~~~~------~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v 203 (328)
T KOG2904|consen 130 TEEWVEAVIDALNNSEHS------KHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLSGRIEV 203 (328)
T ss_pred HHHHHHHHHHHHhhhhhc------ccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhcCceEE
Confidence 345555555554433322 25689999999999999999877 78999999999999999999999999889998
Q ss_pred EEcCCCCC-----CCCCCCccEEEeccccC-C-----C-------CC-------------HHHHHHHHHHhcCCCcEEEE
Q 016921 213 QVGDALQQ-----PFPDGQFDLVWSMESGE-H-----M-------PD-------------KSKFVSELARVTAPAGTIII 261 (380)
Q Consensus 213 ~~~d~~~~-----~~~~~~fD~V~~~~~l~-~-----~-------~~-------------~~~~l~~~~r~LkpgG~l~~ 261 (380)
+..+++.. +...+++|+++++=-.- + + .+ .-.++.-+.|.|+|||.+.+
T Consensus 204 ~~~~me~d~~~~~~l~~~~~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~l 283 (328)
T KOG2904|consen 204 IHNIMESDASDEHPLLEGKIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQL 283 (328)
T ss_pred EecccccccccccccccCceeEEecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEE
Confidence 87665542 34568999999852110 0 0 00 12356678899999999988
Q ss_pred Eec
Q 016921 262 VTW 264 (380)
Q Consensus 262 ~~~ 264 (380)
...
T Consensus 284 e~~ 286 (328)
T KOG2904|consen 284 ELV 286 (328)
T ss_pred Eec
Confidence 653
No 165
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=98.96 E-value=1.7e-09 Score=98.96 Aligned_cols=105 Identities=17% Similarity=0.225 Sum_probs=81.7
Q ss_pred CCEEEEECCCcCh----HHHHHHHHc-----CCEEEEEeCCHHHHHHHHHHHH------------------H-----cC-
Q 016921 159 PKNVVDVGCGIGG----SSRYLAKKF-----GAKCQGITLSPVQAQRANALAA------------------A-----RG- 205 (380)
Q Consensus 159 ~~~vLDiGcGtG~----~~~~l~~~~-----~~~v~giD~s~~~~~~a~~~~~------------------~-----~~- 205 (380)
..+|+..||+||. ++..+.+.. ..+|+|+|+|+.+++.|++-.- . .+
T Consensus 116 ~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~ 195 (287)
T PRK10611 116 EYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGL 195 (287)
T ss_pred CEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCce
Confidence 5899999999998 334444432 2579999999999999987520 0 00
Q ss_pred ------CCCCeEEEEcCCCCCCCC-CCCccEEEeccccCCCCC--HHHHHHHHHHhcCCCcEEEEEe
Q 016921 206 ------LADKVSFQVGDALQQPFP-DGQFDLVWSMESGEHMPD--KSKFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 206 ------~~~~v~~~~~d~~~~~~~-~~~fD~V~~~~~l~~~~~--~~~~l~~~~r~LkpgG~l~~~~ 263 (380)
+-..|.|.+.|+.+.+++ .+.||+|+|.+++.|+.. ..++++++++.|+|||+|++..
T Consensus 196 ~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~lG~ 262 (287)
T PRK10611 196 VRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPDGLLFAGH 262 (287)
T ss_pred EEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEEEeC
Confidence 224688999998875543 588999999999999954 6789999999999999998864
No 166
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=98.96 E-value=1.6e-09 Score=93.22 Aligned_cols=135 Identities=20% Similarity=0.192 Sum_probs=97.4
Q ss_pred CCCEEEEECCCcChHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHcCC-CCCeEEEEcCCCCC--CCCCCCccEEEec
Q 016921 158 RPKNVVDVGCGIGGSSRYLAKKFGA-KCQGITLSPVQAQRANALAAARGL-ADKVSFQVGDALQQ--PFPDGQFDLVWSM 233 (380)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~~~-~v~giD~s~~~~~~a~~~~~~~~~-~~~v~~~~~d~~~~--~~~~~~fD~V~~~ 233 (380)
.+.+|||...|-|..++..+++ |+ +|+-++.++..++.|.-+-=..++ ..+++++.+|+.+. .++|++||+|+..
T Consensus 134 ~G~rVLDtC~GLGYtAi~a~~r-GA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~D~sfDaIiHD 212 (287)
T COG2521 134 RGERVLDTCTGLGYTAIEALER-GAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFDDESFDAIIHD 212 (287)
T ss_pred cCCEeeeeccCccHHHHHHHHc-CCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhcCCccccceEeeC
Confidence 4999999999999999999998 66 999999999999887653211111 23689999998775 5789999999852
Q ss_pred ---cccCCCCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCC
Q 016921 234 ---ESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLS 310 (380)
Q Consensus 234 ---~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aG 310 (380)
+++.----..++.++++|+|||||+++-..-...... .. .--+..+.+.|+++|
T Consensus 213 PPRfS~AgeLYseefY~El~RiLkrgGrlFHYvG~Pg~ry------------------rG-----~d~~~gVa~RLr~vG 269 (287)
T COG2521 213 PPRFSLAGELYSEEFYRELYRILKRGGRLFHYVGNPGKRY------------------RG-----LDLPKGVAERLRRVG 269 (287)
T ss_pred CCccchhhhHhHHHHHHHHHHHcCcCCcEEEEeCCCCccc------------------cc-----CChhHHHHHHHHhcC
Confidence 1111100136899999999999999987652211100 00 123578889999999
Q ss_pred CcEEEE
Q 016921 311 LEDIKA 316 (380)
Q Consensus 311 f~~v~~ 316 (380)
|+++..
T Consensus 270 F~~v~~ 275 (287)
T COG2521 270 FEVVKK 275 (287)
T ss_pred ceeeee
Confidence 997764
No 167
>PHA03412 putative methyltransferase; Provisional
Probab=98.96 E-value=4.6e-09 Score=92.33 Aligned_cols=93 Identities=20% Similarity=0.284 Sum_probs=71.6
Q ss_pred CCEEEEECCCcChHHHHHHHHc----CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEEecc
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKF----GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSME 234 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~----~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~ 234 (380)
+.+|||+|||+|.++..++++. ..+|+++|+++.+++.|+++. .++.++.+|+...++ +++||+|+++=
T Consensus 50 ~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~------~~~~~~~~D~~~~~~-~~~FDlIIsNP 122 (241)
T PHA03412 50 SGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIV------PEATWINADALTTEF-DTLFDMAISNP 122 (241)
T ss_pred CCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhc------cCCEEEEcchhcccc-cCCccEEEECC
Confidence 6799999999999999998753 458999999999999999764 358899999987654 57899999863
Q ss_pred ccCCC--CC----------HHHHHHHHHHhcCCCcE
Q 016921 235 SGEHM--PD----------KSKFVSELARVTAPAGT 258 (380)
Q Consensus 235 ~l~~~--~~----------~~~~l~~~~r~LkpgG~ 258 (380)
-..-. .+ ...+++.+.+++++|+.
T Consensus 123 PY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~ 158 (241)
T PHA03412 123 PFGKIKTSDFKGKYTGAEFEYKVIERASQIARQGTF 158 (241)
T ss_pred CCCCccccccCCcccccHHHHHHHHHHHHHcCCCEE
Confidence 22211 11 34688888886666664
No 168
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=98.95 E-value=7.1e-09 Score=91.61 Aligned_cols=103 Identities=24% Similarity=0.354 Sum_probs=88.2
Q ss_pred CEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC---CCCCCCccEEEeccc
Q 016921 160 KNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ---PFPDGQFDLVWSMES 235 (380)
Q Consensus 160 ~~vLDiGcGtG~~~~~l~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~---~~~~~~fD~V~~~~~ 235 (380)
..+||||||.|.+...+|++. ...++|||+....+..+.+++.+.++. |+.+++.|+..+ -+++++.|-|+..+-
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~-Nlri~~~DA~~~l~~~~~~~sl~~I~i~FP 128 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLK-NLRLLCGDAVEVLDYLIPDGSLDKIYINFP 128 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCC-cEEEEcCCHHHHHHhcCCCCCeeEEEEECC
Confidence 579999999999999999988 678999999999999999999999985 899999999874 134569999998765
Q ss_pred cCCCCCH--------HHHHHHHHHhcCCCcEEEEEe
Q 016921 236 GEHMPDK--------SKFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 236 l~~~~~~--------~~~l~~~~r~LkpgG~l~~~~ 263 (380)
=-|.... ..+++.+.++|+|||.|.+.+
T Consensus 129 DPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aT 164 (227)
T COG0220 129 DPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFAT 164 (227)
T ss_pred CCCCCccccccccCCHHHHHHHHHHccCCCEEEEEe
Confidence 5444221 579999999999999999976
No 169
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.94 E-value=8.4e-08 Score=80.56 Aligned_cols=127 Identities=21% Similarity=0.200 Sum_probs=89.7
Q ss_pred CCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEEeccccCC
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEH 238 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~ 238 (380)
+.+|+|+|||||.+++..+-.....|+|+|+++++++.+++++.+ +..++.|+.+|+.++. ..+|.|+++=-+.-
T Consensus 46 g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r~N~~~--l~g~v~f~~~dv~~~~---~~~dtvimNPPFG~ 120 (198)
T COG2263 46 GKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAEE--LLGDVEFVVADVSDFR---GKFDTVIMNPPFGS 120 (198)
T ss_pred CCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHHHHHHHHHh--hCCceEEEEcchhhcC---CccceEEECCCCcc
Confidence 788999999999999988765357899999999999999999987 3368999999999874 67888777532221
Q ss_pred C---CCHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCcEEE
Q 016921 239 M---PDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIK 315 (380)
Q Consensus 239 ~---~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v~ 315 (380)
. .|. .++..+.+.- .++ +.+++--+.+.+++..+++|+++..
T Consensus 121 ~~rhaDr-~Fl~~Ale~s----~vV------------------------------YsiH~a~~~~f~~~~~~~~G~~v~~ 165 (198)
T COG2263 121 QRRHADR-PFLLKALEIS----DVV------------------------------YSIHKAGSRDFVEKFAADLGGTVTH 165 (198)
T ss_pred ccccCCH-HHHHHHHHhh----heE------------------------------EEeeccccHHHHHHHHHhcCCeEEE
Confidence 1 233 3444444432 111 1112223567888999999999887
Q ss_pred EEecCCCcCC
Q 016921 316 AEDWSQNVAP 325 (380)
Q Consensus 316 ~~~~~~~~~~ 325 (380)
.......+.+
T Consensus 166 ~~~~~~~iP~ 175 (198)
T COG2263 166 IERARFPIPR 175 (198)
T ss_pred EEEEEEecCc
Confidence 7655555443
No 170
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=98.93 E-value=5.2e-09 Score=96.59 Aligned_cols=94 Identities=20% Similarity=0.296 Sum_probs=75.8
Q ss_pred HHHHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCC
Q 016921 139 VRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDAL 218 (380)
Q Consensus 139 ~~~~~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~ 218 (380)
...++.+++.+.+.+ +.+|||||||+|.++..+++. +.+|+++|+++.+++.+++++...+..++++++.+|+.
T Consensus 22 ~~i~~~Iv~~~~~~~-----~~~VLEIG~G~G~LT~~Ll~~-~~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal 95 (294)
T PTZ00338 22 PLVLDKIVEKAAIKP-----TDTVLEIGPGTGNLTEKLLQL-AKKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDAL 95 (294)
T ss_pred HHHHHHHHHhcCCCC-----cCEEEEecCchHHHHHHHHHh-CCcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHh
Confidence 346677777776654 889999999999999999987 77899999999999999999877665578999999998
Q ss_pred CCCCCCCCccEEEeccccCCCCC
Q 016921 219 QQPFPDGQFDLVWSMESGEHMPD 241 (380)
Q Consensus 219 ~~~~~~~~fD~V~~~~~l~~~~~ 241 (380)
+.++ ..||.|+++ .-+++..
T Consensus 96 ~~~~--~~~d~VvaN-lPY~Ist 115 (294)
T PTZ00338 96 KTEF--PYFDVCVAN-VPYQISS 115 (294)
T ss_pred hhcc--cccCEEEec-CCcccCc
Confidence 8764 368988764 3444443
No 171
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=98.90 E-value=8.2e-09 Score=94.07 Aligned_cols=86 Identities=29% Similarity=0.395 Sum_probs=70.8
Q ss_pred HHHHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCC
Q 016921 139 VRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDAL 218 (380)
Q Consensus 139 ~~~~~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~ 218 (380)
.+.++.+++.+.+.+ +.+|||||||+|.++..+++. +.+|+++|+++.+++.+++++.. .+++.++++|+.
T Consensus 15 ~~~~~~iv~~~~~~~-----~~~VLEIG~G~G~lt~~L~~~-~~~v~~vEid~~~~~~l~~~~~~---~~~v~ii~~D~~ 85 (258)
T PRK14896 15 DRVVDRIVEYAEDTD-----GDPVLEIGPGKGALTDELAKR-AKKVYAIELDPRLAEFLRDDEIA---AGNVEIIEGDAL 85 (258)
T ss_pred HHHHHHHHHhcCCCC-----cCeEEEEeCccCHHHHHHHHh-CCEEEEEECCHHHHHHHHHHhcc---CCCEEEEEeccc
Confidence 346667777666544 889999999999999999998 78999999999999999987754 258999999999
Q ss_pred CCCCCCCCccEEEeccc
Q 016921 219 QQPFPDGQFDLVWSMES 235 (380)
Q Consensus 219 ~~~~~~~~fD~V~~~~~ 235 (380)
+++++ .||.|+++--
T Consensus 86 ~~~~~--~~d~Vv~NlP 100 (258)
T PRK14896 86 KVDLP--EFNKVVSNLP 100 (258)
T ss_pred cCCch--hceEEEEcCC
Confidence 88764 4898887644
No 172
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=98.90 E-value=7.5e-09 Score=95.02 Aligned_cols=83 Identities=23% Similarity=0.293 Sum_probs=67.1
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC
Q 016921 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ 220 (380)
Q Consensus 141 ~~~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~ 220 (380)
+++.+++.+.+.. +.+|||||||+|.++..++++ +.+|+|+|+++.|++.+++++.. ++++++++|+.++
T Consensus 30 i~~~i~~~l~~~~-----~~~VLEiG~G~G~lt~~L~~~-~~~v~avE~d~~~~~~~~~~~~~----~~v~~i~~D~~~~ 99 (272)
T PRK00274 30 ILDKIVDAAGPQP-----GDNVLEIGPGLGALTEPLLER-AAKVTAVEIDRDLAPILAETFAE----DNLTIIEGDALKV 99 (272)
T ss_pred HHHHHHHhcCCCC-----cCeEEEeCCCccHHHHHHHHh-CCcEEEEECCHHHHHHHHHhhcc----CceEEEEChhhcC
Confidence 5666677666544 789999999999999999998 56999999999999999886632 5799999999998
Q ss_pred CCCCCCccEEEec
Q 016921 221 PFPDGQFDLVWSM 233 (380)
Q Consensus 221 ~~~~~~fD~V~~~ 233 (380)
++++-.+|.|+++
T Consensus 100 ~~~~~~~~~vv~N 112 (272)
T PRK00274 100 DLSELQPLKVVAN 112 (272)
T ss_pred CHHHcCcceEEEe
Confidence 7653225777765
No 173
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=98.89 E-value=3.6e-08 Score=80.65 Aligned_cols=145 Identities=19% Similarity=0.196 Sum_probs=107.5
Q ss_pred HHHHhccchhhHHHhhcccccccccCCCCCCCcccHHHHHHHHHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHH
Q 016921 99 IAEFYDESSSLWEDIWGDHMHHGFYEPDSSVSVSDHRAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAK 178 (380)
Q Consensus 99 i~~~yd~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~ 178 (380)
++..++..-.++..|......-|---+.+ .-+.++|....+.+. +.-|||+|.|||.++..+..
T Consensus 5 ~~~~f~~e~~F~k~wi~~PrtVGaI~PsS-----------s~lA~~M~s~I~pes-----glpVlElGPGTGV~TkaIL~ 68 (194)
T COG3963 5 LARKFDEEISFFKGWIDNPRTVGAILPSS-----------SILARKMASVIDPES-----GLPVLELGPGTGVITKAILS 68 (194)
T ss_pred hhhhHHHHHHHHHHHhcCCceeeeecCCc-----------HHHHHHHHhccCccc-----CCeeEEEcCCccHhHHHHHh
Confidence 44555656666666655433333222211 114455566555554 88999999999999999998
Q ss_pred Hc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-----CCCCCccEEEeccccCCCCC--HHHHHHHH
Q 016921 179 KF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-----FPDGQFDLVWSMESGEHMPD--KSKFVSEL 249 (380)
Q Consensus 179 ~~--~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~~~~~fD~V~~~~~l~~~~~--~~~~l~~~ 249 (380)
+. ...++.++.|++......++. +.++++.+|+.++. ..+..||.|+|.--+..++- ..++++.+
T Consensus 69 ~gv~~~~L~~iE~~~dF~~~L~~~~------p~~~ii~gda~~l~~~l~e~~gq~~D~viS~lPll~~P~~~~iaile~~ 142 (194)
T COG3963 69 RGVRPESLTAIEYSPDFVCHLNQLY------PGVNIINGDAFDLRTTLGEHKGQFFDSVISGLPLLNFPMHRRIAILESL 142 (194)
T ss_pred cCCCccceEEEEeCHHHHHHHHHhC------CCccccccchhhHHHHHhhcCCCeeeeEEeccccccCcHHHHHHHHHHH
Confidence 75 578999999999988877755 45778999998863 45678999999888877754 46899999
Q ss_pred HHhcCCCcEEEEEecc
Q 016921 250 ARVTAPAGTIIIVTWC 265 (380)
Q Consensus 250 ~r~LkpgG~l~~~~~~ 265 (380)
...|.+||.++...++
T Consensus 143 ~~rl~~gg~lvqftYg 158 (194)
T COG3963 143 LYRLPAGGPLVQFTYG 158 (194)
T ss_pred HHhcCCCCeEEEEEec
Confidence 9999999999988765
No 174
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=98.88 E-value=1.6e-08 Score=98.44 Aligned_cols=100 Identities=24% Similarity=0.301 Sum_probs=76.3
Q ss_pred CCEEEEECCCcChHHHHHHHHc-----CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEEec
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKF-----GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSM 233 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~-----~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~ 233 (380)
+..|||||||+|.++...++.. ..+|++|+-++.+....++++...++.++|+++.+|++++..+ +++|+|++-
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~lp-ekvDIIVSE 265 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVELP-EKVDIIVSE 265 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSCHS-S-EEEEEE-
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCCCC-CceeEEEEe
Confidence 5789999999999987776652 3699999999998888888878888889999999999998754 599999973
Q ss_pred cccCCC---CCHHHHHHHHHHhcCCCcEEE
Q 016921 234 ESGEHM---PDKSKFVSELARVTAPAGTII 260 (380)
Q Consensus 234 ~~l~~~---~~~~~~l~~~~r~LkpgG~l~ 260 (380)
. +..+ .-..+.+..+.+.|||||.++
T Consensus 266 l-LGsfg~nEl~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 266 L-LGSFGDNELSPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp ---BTTBTTTSHHHHHHHGGGGEEEEEEEE
T ss_pred c-cCCccccccCHHHHHHHHhhcCCCCEEe
Confidence 3 2222 224567888999999998765
No 175
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=98.87 E-value=4.4e-08 Score=90.06 Aligned_cols=151 Identities=22% Similarity=0.253 Sum_probs=108.8
Q ss_pred CCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEEeccccCC
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEH 238 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~ 238 (380)
-...+|+|.|.|..+..+...+ .+|-+++.+...+..+..... . .|+.+-+|..+. .|.+ |+|++.+++||
T Consensus 178 v~~avDvGgGiG~v~k~ll~~f-p~ik~infdlp~v~~~a~~~~-~----gV~~v~gdmfq~-~P~~--daI~mkWiLhd 248 (342)
T KOG3178|consen 178 VNVAVDVGGGIGRVLKNLLSKY-PHIKGINFDLPFVLAAAPYLA-P----GVEHVAGDMFQD-TPKG--DAIWMKWILHD 248 (342)
T ss_pred CceEEEcCCcHhHHHHHHHHhC-CCCceeecCHHHHHhhhhhhc-C----Ccceeccccccc-CCCc--CeEEEEeeccc
Confidence 4789999999999999999864 458899998887766665543 2 388888888765 4433 69999999999
Q ss_pred CCCH--HHHHHHHHHhcCCCcEEEEEeccCCCCCCCcc--ccchHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCcEE
Q 016921 239 MPDK--SKFVSELARVTAPAGTIIIVTWCHRDLAPSEE--SLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDI 314 (380)
Q Consensus 239 ~~~~--~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v 314 (380)
+.|. .++|++++..|+|||.+++.|...+....... .......+.+.......+.. .+..+++.++.++||.+.
T Consensus 249 wtDedcvkiLknC~~sL~~~GkIiv~E~V~p~e~~~dd~~s~v~~~~d~lm~~~~~~Gke--rt~~e~q~l~~~~gF~~~ 326 (342)
T KOG3178|consen 249 WTDEDCVKILKNCKKSLPPGGKIIVVENVTPEEDKFDDIDSSVTRDMDLLMLTQTSGGKE--RTLKEFQALLPEEGFPVC 326 (342)
T ss_pred CChHHHHHHHHHHHHhCCCCCEEEEEeccCCCCCCccccccceeehhHHHHHHHhcccee--ccHHHHHhcchhhcCcee
Confidence 9764 69999999999999999999975543211111 11111123333333333333 589999999999999988
Q ss_pred EEEecC
Q 016921 315 KAEDWS 320 (380)
Q Consensus 315 ~~~~~~ 320 (380)
.+....
T Consensus 327 ~~~~~~ 332 (342)
T KOG3178|consen 327 MVALTA 332 (342)
T ss_pred EEEecc
Confidence 765443
No 176
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=98.85 E-value=3e-08 Score=95.12 Aligned_cols=119 Identities=18% Similarity=0.167 Sum_probs=85.3
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEE
Q 016921 135 RAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQV 214 (380)
Q Consensus 135 ~~~~~~~~~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~ 214 (380)
......+++.+...+... ++.+|||++||+|.++..++.. +.+|+|+|+++.+++.|+++++..++ .+++|+.
T Consensus 215 ~~~~~~l~~~~~~~l~~~-----~~~~vLDL~cG~G~~~l~la~~-~~~v~~vE~~~~av~~a~~N~~~~~~-~~~~~~~ 287 (374)
T TIGR02085 215 PKVAAQLYATARQWVREI-----PVTQMWDLFCGVGGFGLHCAGP-DTQLTGIEIESEAIACAQQSAQMLGL-DNLSFAA 287 (374)
T ss_pred HHHHHHHHHHHHHHHHhc-----CCCEEEEccCCccHHHHHHhhc-CCeEEEEECCHHHHHHHHHHHHHcCC-CcEEEEE
Confidence 334444445444444322 2679999999999999999976 68999999999999999999988887 4899999
Q ss_pred cCCCCCCC-CCCCccEEEeccccCCCCCHHHHHHHHHHhcCCCcEEEEEe
Q 016921 215 GDALQQPF-PDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 215 ~d~~~~~~-~~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~ 263 (380)
+|+.+... ..++||+|++.=--. .-...+++.+. .++|++.+++..
T Consensus 288 ~d~~~~~~~~~~~~D~vi~DPPr~--G~~~~~l~~l~-~~~p~~ivyvsc 334 (374)
T TIGR02085 288 LDSAKFATAQMSAPELVLVNPPRR--GIGKELCDYLS-QMAPKFILYSSC 334 (374)
T ss_pred CCHHHHHHhcCCCCCEEEECCCCC--CCcHHHHHHHH-hcCCCeEEEEEe
Confidence 99876421 124699998752211 11234555554 479999888875
No 177
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=98.84 E-value=3.9e-08 Score=90.72 Aligned_cols=115 Identities=21% Similarity=0.239 Sum_probs=89.4
Q ss_pred HHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCC
Q 016921 143 EETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPF 222 (380)
Q Consensus 143 ~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~ 222 (380)
..++....++. |..|||-=||||.++....-. |++++|+|++..|+.-|+.++...++.+-......|+..+|+
T Consensus 187 R~mVNLa~v~~-----G~~vlDPFcGTGgiLiEagl~-G~~viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~~lpl 260 (347)
T COG1041 187 RAMVNLARVKR-----GELVLDPFCGTGGILIEAGLM-GARVIGSDIDERMVRGAKINLEYYGIEDYPVLKVLDATNLPL 260 (347)
T ss_pred HHHHHHhcccc-----CCEeecCcCCccHHHHhhhhc-CceEeecchHHHHHhhhhhhhhhhCcCceeEEEecccccCCC
Confidence 33444444544 899999999999999988654 999999999999999999999888765433344449999999
Q ss_pred CCCCccEEEecccc-----CCCCC----HHHHHHHHHHhcCCCcEEEEEe
Q 016921 223 PDGQFDLVWSMESG-----EHMPD----KSKFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 223 ~~~~fD~V~~~~~l-----~~~~~----~~~~l~~~~r~LkpgG~l~~~~ 263 (380)
+++++|.|++---. ..... ..++++.+.++||+||++++..
T Consensus 261 ~~~~vdaIatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~ 310 (347)
T COG1041 261 RDNSVDAIATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAA 310 (347)
T ss_pred CCCccceEEecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEec
Confidence 88889999973211 11111 3678999999999999999965
No 178
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=98.84 E-value=4.4e-08 Score=88.57 Aligned_cols=105 Identities=19% Similarity=0.298 Sum_probs=81.7
Q ss_pred CCEEEEECCCcCh----HHHHHHHHc------CCEEEEEeCCHHHHHHHHHHHHH-----cCCC----------------
Q 016921 159 PKNVVDVGCGIGG----SSRYLAKKF------GAKCQGITLSPVQAQRANALAAA-----RGLA---------------- 207 (380)
Q Consensus 159 ~~~vLDiGcGtG~----~~~~l~~~~------~~~v~giD~s~~~~~~a~~~~~~-----~~~~---------------- 207 (380)
..+|+-.||+||. ++..+.+.. ..+|+|+|+|...++.|++-.-. .+++
T Consensus 97 ~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~y 176 (268)
T COG1352 97 PIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGSY 176 (268)
T ss_pred ceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCcE
Confidence 7899999999998 444555544 35899999999999998863211 1211
Q ss_pred -------CCeEEEEcCCCCCCCCCCCccEEEeccccCCCCC--HHHHHHHHHHhcCCCcEEEEEe
Q 016921 208 -------DKVSFQVGDALQQPFPDGQFDLVWSMESGEHMPD--KSKFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 208 -------~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~~--~~~~l~~~~r~LkpgG~l~~~~ 263 (380)
..|.|...|+...++..+.||+|+|.+++-++.. ..++++.++..|+|||.|++..
T Consensus 177 ~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~gG~LflG~ 241 (268)
T COG1352 177 RVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDEETQERILRRFADSLKPGGLLFLGH 241 (268)
T ss_pred EEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCCCCEEEEcc
Confidence 2477888887776534578999999999999964 4689999999999999999965
No 179
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=98.83 E-value=4.8e-08 Score=84.14 Aligned_cols=121 Identities=14% Similarity=0.219 Sum_probs=92.1
Q ss_pred CCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCC---CCCccEEEeccc
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFP---DGQFDLVWSMES 235 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~---~~~fD~V~~~~~ 235 (380)
..++|||||=+..+...... -..|+.||+++. .-.+.+.|+.+.|+| +++||+|++..+
T Consensus 52 ~lrlLEVGals~~N~~s~~~--~fdvt~IDLns~----------------~~~I~qqDFm~rplp~~~~e~FdvIs~SLV 113 (219)
T PF11968_consen 52 KLRLLEVGALSTDNACSTSG--WFDVTRIDLNSQ----------------HPGILQQDFMERPLPKNESEKFDVISLSLV 113 (219)
T ss_pred cceEEeecccCCCCcccccC--ceeeEEeecCCC----------------CCCceeeccccCCCCCCcccceeEEEEEEE
Confidence 57999999986655443322 346999999872 234588898887764 679999999999
Q ss_pred cCCCCCH---HHHHHHHHHhcCCCcE-----EEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHHHHHHHHH
Q 016921 236 GEHMPDK---SKFVSELARVTAPAGT-----IIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQ 307 (380)
Q Consensus 236 l~~~~~~---~~~l~~~~r~LkpgG~-----l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~ 307 (380)
|.+++++ .+.++.+++.|+|+|. |+++.+.. .+ ...++.+.+.+..+++
T Consensus 114 LNfVP~p~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~~----------------Cv-------~NSRy~~~~~l~~im~ 170 (219)
T PF11968_consen 114 LNFVPDPKQRGEMLRRAHKFLKPPGLSLFPSLFLVLPLP----------------CV-------TNSRYMTEERLREIME 170 (219)
T ss_pred EeeCCCHHHHHHHHHHHHHHhCCCCccCcceEEEEeCch----------------Hh-------hcccccCHHHHHHHHH
Confidence 9999986 5799999999999999 88875311 00 1124578899999999
Q ss_pred hCCCcEEEEEecC
Q 016921 308 SLSLEDIKAEDWS 320 (380)
Q Consensus 308 ~aGf~~v~~~~~~ 320 (380)
..||..+..+.-.
T Consensus 171 ~LGf~~~~~~~~~ 183 (219)
T PF11968_consen 171 SLGFTRVKYKKSK 183 (219)
T ss_pred hCCcEEEEEEecC
Confidence 9999999875443
No 180
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=98.79 E-value=8.5e-08 Score=82.30 Aligned_cols=116 Identities=25% Similarity=0.301 Sum_probs=83.3
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHc-CCE---------EEEEeCCHHHHHHHHHHHHHcCCCCCe
Q 016921 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF-GAK---------CQGITLSPVQAQRANALAAARGLADKV 210 (380)
Q Consensus 141 ~~~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~-~~~---------v~giD~s~~~~~~a~~~~~~~~~~~~v 210 (380)
+...++.....+. +..|||--||+|.+.++.+... +.. ++|+|+++.+++.|++++...++...+
T Consensus 16 lA~~ll~la~~~~-----~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i 90 (179)
T PF01170_consen 16 LAAALLNLAGWRP-----GDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYI 90 (179)
T ss_dssp HHHHHHHHTT--T-----TS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGE
T ss_pred HHHHHHHHhCCCC-----CCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCce
Confidence 4445556665554 8899999999999999887765 444 889999999999999999999988889
Q ss_pred EEEEcCCCCCCCCCCCccEEEeccccCCC-CC-------HHHHHHHHHHhcCCCcEEEE
Q 016921 211 SFQVGDALQQPFPDGQFDLVWSMESGEHM-PD-------KSKFVSELARVTAPAGTIII 261 (380)
Q Consensus 211 ~~~~~d~~~~~~~~~~fD~V~~~~~l~~~-~~-------~~~~l~~~~r~LkpgG~l~~ 261 (380)
.+.+.|+.++++.++++|.|++.--...- .+ ...+++++.++|++...+++
T Consensus 91 ~~~~~D~~~l~~~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~~~v~l~ 149 (179)
T PF01170_consen 91 DFIQWDARELPLPDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKPRAVFLT 149 (179)
T ss_dssp EEEE--GGGGGGTTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTTCEEEEE
T ss_pred EEEecchhhcccccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCCCEEEEE
Confidence 99999999998778899999986433221 11 13577889999999333333
No 181
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=98.78 E-value=9e-08 Score=82.04 Aligned_cols=148 Identities=16% Similarity=0.172 Sum_probs=106.4
Q ss_pred HHHHHHHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEE
Q 016921 136 AAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQV 214 (380)
Q Consensus 136 ~~~~~~~~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~ 214 (380)
.+.+.+++.+.-.-.+.. .+.+++|||+|.|..++.++-.. ..+++.+|.+..-....+......++. |+++++
T Consensus 30 ~~~~Hi~DSL~~~~~~~~----~~~~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L~-nv~v~~ 104 (184)
T PF02527_consen 30 IWERHILDSLALLPFLPD----FGKKVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGLS-NVEVIN 104 (184)
T ss_dssp HHHHHHHHHHGGGGCS-C----CCSEEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-S-SEEEEE
T ss_pred HHHHHHHHHHHhhhhhcc----CCceEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCCC-CEEEEE
Confidence 344455555543333332 13389999999999999998877 679999999999999999999888984 899999
Q ss_pred cCCCCCCCCCCCccEEEeccccCCCCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCC
Q 016921 215 GDALQQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLP 294 (380)
Q Consensus 215 ~d~~~~~~~~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (380)
..+++ +....+||+|+++.+ .....++.-+...|++||.+++.--. . ..+
T Consensus 105 ~R~E~-~~~~~~fd~v~aRAv----~~l~~l~~~~~~~l~~~G~~l~~KG~------~-------~~~------------ 154 (184)
T PF02527_consen 105 GRAEE-PEYRESFDVVTARAV----APLDKLLELARPLLKPGGRLLAYKGP------D-------AEE------------ 154 (184)
T ss_dssp S-HHH-TTTTT-EEEEEEESS----SSHHHHHHHHGGGEEEEEEEEEEESS---------------HH------------
T ss_pred eeecc-cccCCCccEEEeehh----cCHHHHHHHHHHhcCCCCEEEEEcCC------C-------hHH------------
Confidence 99998 445689999999754 46788999999999999999886410 0 001
Q ss_pred CCCCHHHHHHHHHhCCCcEEEEEecCC
Q 016921 295 AWCSTADYVKLLQSLSLEDIKAEDWSQ 321 (380)
Q Consensus 295 ~~~~~~~~~~ll~~aGf~~v~~~~~~~ 321 (380)
..++....++..|.+...+..+..
T Consensus 155 ---El~~~~~~~~~~~~~~~~v~~~~~ 178 (184)
T PF02527_consen 155 ---ELEEAKKAWKKLGLKVLSVPEFEL 178 (184)
T ss_dssp ---HHHTHHHHHHCCCEEEEEEEEEE-
T ss_pred ---HHHHHHhHHHHhCCEEeeeccccC
Confidence 123455667778888888776654
No 182
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=98.78 E-value=7.3e-08 Score=83.42 Aligned_cols=104 Identities=9% Similarity=-0.052 Sum_probs=76.4
Q ss_pred CCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC-C-C-CCC-CccEEEecc
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ-P-F-PDG-QFDLVWSME 234 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~-~-~~~-~fD~V~~~~ 234 (380)
+.+|||++||+|.++..++.+....|+++|.++..++.++++++..+...+++++.+|+.+. . + ... .||+|+..=
T Consensus 50 g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~DP 129 (189)
T TIGR00095 50 GAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIYLDP 129 (189)
T ss_pred CCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEEECc
Confidence 78999999999999999999844589999999999999999998888766899999998553 1 1 122 467776532
Q ss_pred ccCCCCCHHHHHHHHHH--hcCCCcEEEEEe
Q 016921 235 SGEHMPDKSKFVSELAR--VTAPAGTIIIVT 263 (380)
Q Consensus 235 ~l~~~~~~~~~l~~~~r--~LkpgG~l~~~~ 263 (380)
-. .-.....++..+.+ +|+++|.+++-.
T Consensus 130 Py-~~~~~~~~l~~l~~~~~l~~~~iiv~E~ 159 (189)
T TIGR00095 130 PF-FNGALQALLELCENNWILEDTVLIVVEE 159 (189)
T ss_pred CC-CCCcHHHHHHHHHHCCCCCCCeEEEEEe
Confidence 22 22233455555544 678888776644
No 183
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=98.75 E-value=1.5e-07 Score=85.59 Aligned_cols=103 Identities=25% Similarity=0.348 Sum_probs=74.5
Q ss_pred HHHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCC
Q 016921 140 RMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ 219 (380)
Q Consensus 140 ~~~~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 219 (380)
.+++.+++.+.+.. +.+|||||||+|.++..+++. +..|+++|+++.+++.++++... .+++.++.+|+.+
T Consensus 16 ~i~~~i~~~~~~~~-----~~~VLEiG~G~G~lt~~L~~~-~~~v~~iE~d~~~~~~l~~~~~~---~~~v~v~~~D~~~ 86 (253)
T TIGR00755 16 SVIQKIVEAANVLE-----GDVVLEIGPGLGALTEPLLKR-AKKVTAIEIDPRLAEILRKLLSL---YERLEVIEGDALK 86 (253)
T ss_pred HHHHHHHHhcCCCC-----cCEEEEeCCCCCHHHHHHHHh-CCcEEEEECCHHHHHHHHHHhCc---CCcEEEEECchhc
Confidence 35667777666554 889999999999999999998 56899999999999999887643 2579999999998
Q ss_pred CCCCCCCcc---EEEeccccCCCCCHHHHHHHHHHhcCCCcE
Q 016921 220 QPFPDGQFD---LVWSMESGEHMPDKSKFVSELARVTAPAGT 258 (380)
Q Consensus 220 ~~~~~~~fD---~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~ 258 (380)
.+++ .|| .|+++- -+|+. ..++.++.. .+|+.
T Consensus 87 ~~~~--~~d~~~~vvsNl-Py~i~--~~il~~ll~--~~~~~ 121 (253)
T TIGR00755 87 VDLP--DFPKQLKVVSNL-PYNIS--SPLIFKLLE--KPKFR 121 (253)
T ss_pred CChh--HcCCcceEEEcC-ChhhH--HHHHHHHhc--cCCCc
Confidence 8754 466 555543 23332 334444443 45544
No 184
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=98.74 E-value=6.2e-09 Score=99.68 Aligned_cols=99 Identities=25% Similarity=0.424 Sum_probs=70.1
Q ss_pred CCEEEEECCCcChHHHHHHHHcCCEEEEE---eCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEEeccc
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGI---TLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMES 235 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~~v~gi---D~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~ 235 (380)
-..+||||||+|.|+.+|.++ +..+..+ |..+.+++.|.+ .|+|.-+. ......+||+++.||+|+|..+
T Consensus 118 iR~~LDvGcG~aSF~a~l~~r-~V~t~s~a~~d~~~~qvqfale----RGvpa~~~--~~~s~rLPfp~~~fDmvHcsrc 190 (506)
T PF03141_consen 118 IRTALDVGCGVASFGAYLLER-NVTTMSFAPNDEHEAQVQFALE----RGVPAMIG--VLGSQRLPFPSNAFDMVHCSRC 190 (506)
T ss_pred eEEEEeccceeehhHHHHhhC-CceEEEcccccCCchhhhhhhh----cCcchhhh--hhccccccCCccchhhhhcccc
Confidence 356899999999999999987 4332222 333445544433 45543222 2234678999999999999887
Q ss_pred cCCC-CCHHHHHHHHHHhcCCCcEEEEEec
Q 016921 236 GEHM-PDKSKFVSELARVTAPAGTIIIVTW 264 (380)
Q Consensus 236 l~~~-~~~~~~l~~~~r~LkpgG~l~~~~~ 264 (380)
+... ++-..++-++.|+|+|||+++++..
T Consensus 191 ~i~W~~~~g~~l~evdRvLRpGGyfv~S~p 220 (506)
T PF03141_consen 191 LIPWHPNDGFLLFEVDRVLRPGGYFVLSGP 220 (506)
T ss_pred cccchhcccceeehhhhhhccCceEEecCC
Confidence 7555 4446788999999999999999763
No 185
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.74 E-value=1.3e-07 Score=94.09 Aligned_cols=127 Identities=14% Similarity=0.190 Sum_probs=99.1
Q ss_pred HHHHHHHHHHHHHcCCCCC--CCCCCCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEE
Q 016921 136 AAQVRMIEETLRFAGVSED--PTKRPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSF 212 (380)
Q Consensus 136 ~~~~~~~~~ll~~~~~~~~--~~~~~~~vLDiGcGtG~~~~~l~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~ 212 (380)
..+++.++.......+... ....+..+||||||.|.++..+|... ...++|+|+...-+..+.++....++ .|+.+
T Consensus 323 ~~q~~~~e~~~p~~~i~~eklf~~~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l-~N~~~ 401 (506)
T PRK01544 323 GVQQNLLDNELPKYLFSKEKLVNEKRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNI-TNFLL 401 (506)
T ss_pred HHHHHHHHhhhhhhCCCHHHhCCCCCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCC-CeEEE
Confidence 4566666666666554421 12246789999999999999999987 78999999999999998888887777 58988
Q ss_pred EEcCCCCC--CCCCCCccEEEeccccCCCCCH--------HHHHHHHHHhcCCCcEEEEEe
Q 016921 213 QVGDALQQ--PFPDGQFDLVWSMESGEHMPDK--------SKFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 213 ~~~d~~~~--~~~~~~fD~V~~~~~l~~~~~~--------~~~l~~~~r~LkpgG~l~~~~ 263 (380)
+..|+..+ -++++++|.|++.+-=-|.... ..+++.++++|||||.+.+.+
T Consensus 402 ~~~~~~~~~~~~~~~sv~~i~i~FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~T 462 (506)
T PRK01544 402 FPNNLDLILNDLPNNSLDGIYILFPDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFAS 462 (506)
T ss_pred EcCCHHHHHHhcCcccccEEEEECCCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEc
Confidence 88887543 2678899999987655554221 579999999999999999876
No 186
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.74 E-value=8e-08 Score=81.64 Aligned_cols=100 Identities=21% Similarity=0.291 Sum_probs=80.8
Q ss_pred CCCEEEEECCCcChHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCC---------CCCeEEEEcCCCCCCCCCC
Q 016921 158 RPKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGL---------ADKVSFQVGDALQQPFPDG 225 (380)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~---~~~v~giD~s~~~~~~a~~~~~~~~~---------~~~v~~~~~d~~~~~~~~~ 225 (380)
|+.+.||+|+|+|.++..++... +..++|||.-++.++.+++++.+.-. ..++.++++|.....-+..
T Consensus 82 pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g~~e~a 161 (237)
T KOG1661|consen 82 PGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKGYAEQA 161 (237)
T ss_pred cCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCccccCCccC
Confidence 59999999999999999888765 34459999999999999998865431 2468899999988766678
Q ss_pred CccEEEeccccCCCCCHHHHHHHHHHhcCCCcEEEEEe
Q 016921 226 QFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 226 ~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~ 263 (380)
+||.|++.... .+.-+++...|++||++++--
T Consensus 162 ~YDaIhvGAaa------~~~pq~l~dqL~~gGrllip~ 193 (237)
T KOG1661|consen 162 PYDAIHVGAAA------SELPQELLDQLKPGGRLLIPV 193 (237)
T ss_pred CcceEEEccCc------cccHHHHHHhhccCCeEEEee
Confidence 99999987433 345677888999999999854
No 187
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=98.71 E-value=2.7e-07 Score=83.53 Aligned_cols=102 Identities=25% Similarity=0.287 Sum_probs=80.7
Q ss_pred CCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEEeccccC
Q 016921 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGE 237 (380)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~ 237 (380)
.+..|||+|||+|.++...++....+|++++.| +|.+.|++.++.+.+.++|.++.+-++++.+| ++.|+|++--+-.
T Consensus 177 ~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS-~MAqyA~~Lv~~N~~~~rItVI~GKiEdieLP-Ek~DviISEPMG~ 254 (517)
T KOG1500|consen 177 QDKIVLDVGAGSGILSFFAAQAGAKKVYAVEAS-EMAQYARKLVASNNLADRITVIPGKIEDIELP-EKVDVIISEPMGY 254 (517)
T ss_pred CCcEEEEecCCccHHHHHHHHhCcceEEEEehh-HHHHHHHHHHhcCCccceEEEccCccccccCc-hhccEEEeccchh
Confidence 478899999999999999998856789999985 58999999999888899999999999998776 7899998742222
Q ss_pred CCCC--HHHHHHHHHHhcCCCcEEEE
Q 016921 238 HMPD--KSKFVSELARVTAPAGTIII 261 (380)
Q Consensus 238 ~~~~--~~~~l~~~~r~LkpgG~l~~ 261 (380)
-+-+ .-+..-.+.+.|||.|..+=
T Consensus 255 mL~NERMLEsYl~Ark~l~P~GkMfP 280 (517)
T KOG1500|consen 255 MLVNERMLESYLHARKWLKPNGKMFP 280 (517)
T ss_pred hhhhHHHHHHHHHHHhhcCCCCcccC
Confidence 2211 12333346699999998764
No 188
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=98.67 E-value=1.3e-07 Score=83.84 Aligned_cols=103 Identities=17% Similarity=0.224 Sum_probs=66.7
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCe-EEEEcCCCC
Q 016921 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKV-SFQVGDALQ 219 (380)
Q Consensus 141 ~~~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v-~~~~~d~~~ 219 (380)
.+..++...++. .++.+|||+|||||.++..+++....+|+++|+++.|+....+ .. +++ .+...|+..
T Consensus 62 kL~~~l~~~~~~----~~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~~l~---~~---~~v~~~~~~ni~~ 131 (228)
T TIGR00478 62 KLKEALEEFNID----VKNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAEKLR---QD---ERVKVLERTNIRY 131 (228)
T ss_pred HHHHHHHhcCCC----CCCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHh---cC---CCeeEeecCCccc
Confidence 445556655442 2478999999999999999998734589999999988876211 11 232 234445543
Q ss_pred CCC-----CCCCccEEEeccccCCCCCHHHHHHHHHHhcCCCcEEEEE
Q 016921 220 QPF-----PDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIV 262 (380)
Q Consensus 220 ~~~-----~~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~ 262 (380)
... .-..+|++++.. ...+..+.+.|+| |.+++.
T Consensus 132 ~~~~~~~~d~~~~DvsfiS~--------~~~l~~i~~~l~~-~~~~~L 170 (228)
T TIGR00478 132 VTPADIFPDFATFDVSFISL--------ISILPELDLLLNP-NDLTLL 170 (228)
T ss_pred CCHhHcCCCceeeeEEEeeh--------HhHHHHHHHHhCc-CeEEEE
Confidence 321 113566555533 2358889999999 776664
No 189
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=98.67 E-value=1.5e-07 Score=83.11 Aligned_cols=85 Identities=22% Similarity=0.327 Sum_probs=74.1
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC
Q 016921 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ 220 (380)
Q Consensus 141 ~~~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~ 220 (380)
.++.++...++++ +..|||||.|||.++..|.+. +++|+++++++.|++..+++.........++++++|+...
T Consensus 46 v~~~I~~ka~~k~-----tD~VLEvGPGTGnLT~~lLe~-~kkVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~ 119 (315)
T KOG0820|consen 46 VIDQIVEKADLKP-----TDVVLEVGPGTGNLTVKLLEA-GKKVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKT 119 (315)
T ss_pred HHHHHHhccCCCC-----CCEEEEeCCCCCHHHHHHHHh-cCeEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccC
Confidence 6777888887776 999999999999999999998 8999999999999999999987665558899999999887
Q ss_pred CCCCCCccEEEec
Q 016921 221 PFPDGQFDLVWSM 233 (380)
Q Consensus 221 ~~~~~~fD~V~~~ 233 (380)
++| .||.++++
T Consensus 120 d~P--~fd~cVsN 130 (315)
T KOG0820|consen 120 DLP--RFDGCVSN 130 (315)
T ss_pred CCc--ccceeecc
Confidence 654 68988873
No 190
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.66 E-value=5.1e-07 Score=78.16 Aligned_cols=113 Identities=19% Similarity=0.298 Sum_probs=93.7
Q ss_pred HHHHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcC
Q 016921 139 VRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGD 216 (380)
Q Consensus 139 ~~~~~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~--~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d 216 (380)
-.++.-+++... +.++||||.=||..++.+|... +.+|+++|+++...+.+.+..+..|+..+|++++++
T Consensus 62 g~fl~~li~~~~--------ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~ 133 (237)
T KOG1663|consen 62 GQFLQMLIRLLN--------AKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGP 133 (237)
T ss_pred HHHHHHHHHHhC--------CceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecc
Confidence 345666666553 7889999999999999999887 789999999999999999999999999999999999
Q ss_pred CCCC------CCCCCCccEEEeccccCCC-CCHHHHHHHHHHhcCCCcEEEEEe
Q 016921 217 ALQQ------PFPDGQFDLVWSMESGEHM-PDKSKFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 217 ~~~~------~~~~~~fD~V~~~~~l~~~-~~~~~~l~~~~r~LkpgG~l~~~~ 263 (380)
+.+. ..+.++||+++.- |. .+....+.++.+++|+||.|++-.
T Consensus 134 a~esLd~l~~~~~~~tfDfaFvD----adK~nY~~y~e~~l~Llr~GGvi~~DN 183 (237)
T KOG1663|consen 134 ALESLDELLADGESGTFDFAFVD----ADKDNYSNYYERLLRLLRVGGVIVVDN 183 (237)
T ss_pred hhhhHHHHHhcCCCCceeEEEEc----cchHHHHHHHHHHHhhcccccEEEEec
Confidence 8662 2346899999874 32 233578899999999999999865
No 191
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=98.65 E-value=4.2e-07 Score=87.07 Aligned_cols=99 Identities=17% Similarity=0.119 Sum_probs=81.7
Q ss_pred CCEEEEECCCcChHHHHHHHHcC-CEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEEeccccC
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKFG-AKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGE 237 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~-~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~ 237 (380)
+.+|||++||+|..++.++...+ ..|+++|+++..++.++++++.+++. ++.+.++|+..+....+.||+|++.= .
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~-~~~v~~~Da~~~l~~~~~fD~V~lDP-~- 134 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLE-NEKVFNKDANALLHEERKFDVVDIDP-F- 134 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCC-ceEEEhhhHHHHHhhcCCCCEEEECC-C-
Confidence 46899999999999999988764 48999999999999999999888874 67799999876421146799998842 2
Q ss_pred CCCCHHHHHHHHHHhcCCCcEEEEE
Q 016921 238 HMPDKSKFVSELARVTAPAGTIIIV 262 (380)
Q Consensus 238 ~~~~~~~~l~~~~r~LkpgG~l~~~ 262 (380)
..+..++..+.+.+++||.+.++
T Consensus 135 --Gs~~~~l~~al~~~~~~gilyvS 157 (382)
T PRK04338 135 --GSPAPFLDSAIRSVKRGGLLCVT 157 (382)
T ss_pred --CCcHHHHHHHHHHhcCCCEEEEE
Confidence 34567888888889999999997
No 192
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=98.65 E-value=1.7e-07 Score=89.06 Aligned_cols=104 Identities=27% Similarity=0.298 Sum_probs=86.1
Q ss_pred CCEEEEECCCcChHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHcCCC-CCeEEEEcCCCCC----CCCCCCccEEEe
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKFGA-KCQGITLSPVQAQRANALAAARGLA-DKVSFQVGDALQQ----PFPDGQFDLVWS 232 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~-~v~giD~s~~~~~~a~~~~~~~~~~-~~v~~~~~d~~~~----~~~~~~fD~V~~ 232 (380)
+.+|||+=|=||.++...|.. |+ +|+.||+|...++.|++++..+|+. .++.|+++|+.+. .-...+||+|++
T Consensus 218 GkrvLNlFsYTGgfSv~Aa~g-GA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fDlIil 296 (393)
T COG1092 218 GKRVLNLFSYTGGFSVHAALG-GASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKFDLIIL 296 (393)
T ss_pred CCeEEEecccCcHHHHHHHhc-CCCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCCcccEEEE
Confidence 899999999999999999986 66 9999999999999999999999984 5689999998774 123459999997
Q ss_pred c---------cccCCCCCHHHHHHHHHHhcCCCcEEEEEe
Q 016921 233 M---------ESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 233 ~---------~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~ 263 (380)
. ....-..+...++..+.++|+|||.++++.
T Consensus 297 DPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s 336 (393)
T COG1092 297 DPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSS 336 (393)
T ss_pred CCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEe
Confidence 2 111112345678899999999999999986
No 193
>PLN02823 spermine synthase
Probab=98.64 E-value=1.9e-07 Score=87.70 Aligned_cols=103 Identities=16% Similarity=0.199 Sum_probs=79.5
Q ss_pred CCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcC---CCCCeEEEEcCCCCC-CCCCCCccEEEec
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARG---LADKVSFQVGDALQQ-PFPDGQFDLVWSM 233 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~-~~~v~giD~s~~~~~~a~~~~~~~~---~~~~v~~~~~d~~~~-~~~~~~fD~V~~~ 233 (380)
+.+||.||+|.|..+..+++.. ..+|+.+|+++.+++.+++.+...+ -.++++++.+|+... ....++||+|++.
T Consensus 104 pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi~D 183 (336)
T PLN02823 104 PKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVIIGD 183 (336)
T ss_pred CCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEEec
Confidence 6799999999999999988864 5689999999999999999875321 136899999998774 3335789999976
Q ss_pred cccCCC----C---CHHHHHH-HHHHhcCCCcEEEEE
Q 016921 234 ESGEHM----P---DKSKFVS-ELARVTAPAGTIIIV 262 (380)
Q Consensus 234 ~~l~~~----~---~~~~~l~-~~~r~LkpgG~l~~~ 262 (380)
.. ... + -..++++ .+.+.|+|||.+++.
T Consensus 184 ~~-dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q 219 (336)
T PLN02823 184 LA-DPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQ 219 (336)
T ss_pred CC-CccccCcchhhccHHHHHHHHHHhcCCCcEEEEe
Confidence 31 111 0 0246777 899999999998774
No 194
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=98.64 E-value=1.3e-07 Score=81.97 Aligned_cols=98 Identities=20% Similarity=0.221 Sum_probs=75.9
Q ss_pred CCCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEEecccc
Q 016921 158 RPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESG 236 (380)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l 236 (380)
++..|||+-||.|.+++.+++.. +..|+++|++|...+..++.+..+++..++..+++|+.++.. .+.||.|++..-
T Consensus 101 ~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~-~~~~drvim~lp- 178 (200)
T PF02475_consen 101 PGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLP-EGKFDRVIMNLP- 178 (200)
T ss_dssp TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG----TT-EEEEEE--T-
T ss_pred cceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcC-ccccCEEEECCh-
Confidence 48999999999999999999844 788999999999999999999999998889999999998754 789999988532
Q ss_pred CCCCCHHHHHHHHHHhcCCCcEEE
Q 016921 237 EHMPDKSKFVSELARVTAPAGTII 260 (380)
Q Consensus 237 ~~~~~~~~~l~~~~r~LkpgG~l~ 260 (380)
.....++..+.+++++||.+-
T Consensus 179 ---~~~~~fl~~~~~~~~~~g~ih 199 (200)
T PF02475_consen 179 ---ESSLEFLDAALSLLKEGGIIH 199 (200)
T ss_dssp ---SSGGGGHHHHHHHEEEEEEEE
T ss_pred ---HHHHHHHHHHHHHhcCCcEEE
Confidence 223467888999999998763
No 195
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=98.61 E-value=3.4e-06 Score=74.64 Aligned_cols=110 Identities=18% Similarity=0.245 Sum_probs=90.9
Q ss_pred HHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCC
Q 016921 142 IEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ 219 (380)
Q Consensus 142 ~~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~--~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 219 (380)
+..++..+.+.+ +.+|||-|+|+|.++..+++.. -.+++-+|+...-.+.|.+.+++.|+++++.+.+-|+..
T Consensus 94 ia~I~~~L~i~P-----GsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~ 168 (314)
T KOG2915|consen 94 IAMILSMLEIRP-----GSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCG 168 (314)
T ss_pred HHHHHHHhcCCC-----CCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeeccc
Confidence 344455555554 9999999999999999999987 368999999999999999999999999999999999988
Q ss_pred CCCC--CCCccEEEeccccCCCCCHHHHHHHHHHhcCCCcEEEE
Q 016921 220 QPFP--DGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIII 261 (380)
Q Consensus 220 ~~~~--~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~ 261 (380)
..|. +..+|.|+. -++.|..++-.++.+||.+|.-++
T Consensus 169 ~GF~~ks~~aDaVFL-----DlPaPw~AiPha~~~lk~~g~r~c 207 (314)
T KOG2915|consen 169 SGFLIKSLKADAVFL-----DLPAPWEAIPHAAKILKDEGGRLC 207 (314)
T ss_pred CCccccccccceEEE-----cCCChhhhhhhhHHHhhhcCceEE
Confidence 6543 577898876 356777888889999998885333
No 196
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=98.57 E-value=1.1e-07 Score=84.81 Aligned_cols=98 Identities=26% Similarity=0.360 Sum_probs=81.1
Q ss_pred CCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCe-EEEEcCCCCCCCCCCCccEEEeccccC
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKV-SFQVGDALQQPFPDGQFDLVWSMESGE 237 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v-~~~~~d~~~~~~~~~~fD~V~~~~~l~ 237 (380)
+..++|+|||.|..... ...+.++|.|++...+..+++ .+. ....+|+..+|+.+.+||.+++..++|
T Consensus 46 gsv~~d~gCGngky~~~---~p~~~~ig~D~c~~l~~~ak~--------~~~~~~~~ad~l~~p~~~~s~d~~lsiavih 114 (293)
T KOG1331|consen 46 GSVGLDVGCGNGKYLGV---NPLCLIIGCDLCTGLLGGAKR--------SGGDNVCRADALKLPFREESFDAALSIAVIH 114 (293)
T ss_pred cceeeecccCCcccCcC---CCcceeeecchhhhhcccccc--------CCCceeehhhhhcCCCCCCccccchhhhhhh
Confidence 78899999999864432 125689999999998887764 223 678899999999999999999999999
Q ss_pred CCCC---HHHHHHHHHHhcCCCcEEEEEeccCC
Q 016921 238 HMPD---KSKFVSELARVTAPAGTIIIVTWCHR 267 (380)
Q Consensus 238 ~~~~---~~~~l~~~~r~LkpgG~l~~~~~~~~ 267 (380)
|+.. ...+++++.|+|+|||...+..|...
T Consensus 115 hlsT~~RR~~~l~e~~r~lrpgg~~lvyvwa~~ 147 (293)
T KOG1331|consen 115 HLSTRERRERALEELLRVLRPGGNALVYVWALE 147 (293)
T ss_pred hhhhHHHHHHHHHHHHHHhcCCCceEEEEehhh
Confidence 9954 46899999999999999988877543
No 197
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=98.57 E-value=1.9e-07 Score=83.78 Aligned_cols=145 Identities=14% Similarity=0.071 Sum_probs=91.5
Q ss_pred CCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCC----------------C-----------CCe
Q 016921 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGL----------------A-----------DKV 210 (380)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~----------------~-----------~~v 210 (380)
++.++||||||.-..-..-+...-.+|+..|.++...+..++.++..+- . ..|
T Consensus 56 ~g~~llDiGsGPtiy~~lsa~~~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR~~V 135 (256)
T PF01234_consen 56 KGETLLDIGSGPTIYQLLSACEWFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLRRAV 135 (256)
T ss_dssp -EEEEEEES-TT--GGGTTGGGTEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHHHHE
T ss_pred CCCEEEEeCCCcHHHhhhhHHHhhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHHHhh
Confidence 3789999999985543332323245799999999988877766543321 0 113
Q ss_pred -EEEEcCCCCCC-CCC-----CCccEEEeccccCCC-CCH---HHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchH
Q 016921 211 -SFQVGDALQQP-FPD-----GQFDLVWSMESGEHM-PDK---SKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPW 279 (380)
Q Consensus 211 -~~~~~d~~~~~-~~~-----~~fD~V~~~~~l~~~-~~~---~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~ 279 (380)
.++..|+.+.+ +.. .+||+|++.+.++.. +|. ..+++++.++|||||.|++.............
T Consensus 136 k~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~l~~t~Y~vG~----- 210 (256)
T PF01234_consen 136 KQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGVLGSTYYMVGG----- 210 (256)
T ss_dssp EEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEESS-SEEEETT-----
T ss_pred ceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEEcCceeEEECC-----
Confidence 36778887753 322 359999999999877 343 67899999999999999998753222110000
Q ss_pred HHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCcEEEEE
Q 016921 280 EQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAE 317 (380)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v~~~ 317 (380)
..+.. -..+.+.+++.|+++||.+++.+
T Consensus 211 ---------~~F~~-l~l~ee~v~~al~~aG~~i~~~~ 238 (256)
T PF01234_consen 211 ---------HKFPC-LPLNEEFVREALEEAGFDIEDLE 238 (256)
T ss_dssp ---------EEEE----B-HHHHHHHHHHTTEEEEEEE
T ss_pred ---------Eeccc-ccCCHHHHHHHHHHcCCEEEecc
Confidence 00000 12578999999999999998876
No 198
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=98.55 E-value=6.4e-07 Score=85.23 Aligned_cols=116 Identities=16% Similarity=0.137 Sum_probs=79.9
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEE
Q 016921 135 RAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQV 214 (380)
Q Consensus 135 ~~~~~~~~~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~ 214 (380)
......+++.+++.+... +.+|||++||+|.++..+++. ..+|+|+|+++.+++.|++++...++ .+++|+.
T Consensus 180 ~~~~~~l~~~v~~~~~~~------~~~vlDl~~G~G~~sl~la~~-~~~v~~vE~~~~av~~a~~n~~~~~~-~~v~~~~ 251 (353)
T TIGR02143 180 AAVNIKMLEWACEVTQGS------KGDLLELYCGNGNFSLALAQN-FRRVLATEIAKPSVNAAQYNIAANNI-DNVQIIR 251 (353)
T ss_pred HHHHHHHHHHHHHHhhcC------CCcEEEEeccccHHHHHHHHh-CCEEEEEECCHHHHHHHHHHHHHcCC-CcEEEEE
Confidence 334445555665554321 346999999999999999987 46999999999999999999988887 4799999
Q ss_pred cCCCCCC--------C---C-----CCCccEEEeccccCCCCCHHHHHHHHHHhcCCCcEEEEEe
Q 016921 215 GDALQQP--------F---P-----DGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 215 ~d~~~~~--------~---~-----~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~ 263 (380)
+|+.+.- + . ...||+|+..=- . -.-...+++.+. +|++.+++..
T Consensus 252 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~lDPP-R-~G~~~~~l~~l~---~~~~ivYvsC 311 (353)
T TIGR02143 252 MSAEEFTQAMNGVREFRRLKGIDLKSYNCSTIFVDPP-R-AGLDPDTCKLVQ---AYERILYISC 311 (353)
T ss_pred cCHHHHHHHHhhccccccccccccccCCCCEEEECCC-C-CCCcHHHHHHHH---cCCcEEEEEc
Confidence 9987631 0 0 113798887311 0 011134444443 4788888865
No 199
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=98.55 E-value=2.2e-06 Score=74.78 Aligned_cols=152 Identities=16% Similarity=0.104 Sum_probs=111.0
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEE
Q 016921 134 HRAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSF 212 (380)
Q Consensus 134 ~~~~~~~~~~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~ 212 (380)
...+.+.+++.+.-...... .+.+++|||+|.|..+..+|-.. ..+|+-+|....-+.+.+....+.++ +|+++
T Consensus 47 ~e~~~rHilDSl~~~~~~~~----~~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L-~nv~i 121 (215)
T COG0357 47 EELWQRHILDSLVLLPYLDG----KAKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGL-ENVEI 121 (215)
T ss_pred HHHHHHHHHHHhhhhhcccc----cCCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCC-CCeEE
Confidence 34555556655543332221 15899999999999999988544 67899999999999999998888888 58999
Q ss_pred EEcCCCCCCCCCCC-ccEEEeccccCCCCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchHHHHHHHHHhhcc
Q 016921 213 QVGDALQQPFPDGQ-FDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAY 291 (380)
Q Consensus 213 ~~~d~~~~~~~~~~-fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (380)
+++.+++..- ... ||+|+++.+ .+...++.-+...+|+||.+++.-+.. ..
T Consensus 122 ~~~RaE~~~~-~~~~~D~vtsRAv----a~L~~l~e~~~pllk~~g~~~~~k~~~-----------------~~------ 173 (215)
T COG0357 122 VHGRAEEFGQ-EKKQYDVVTSRAV----ASLNVLLELCLPLLKVGGGFLAYKGLA-----------------GK------ 173 (215)
T ss_pred ehhhHhhccc-ccccCcEEEeehc----cchHHHHHHHHHhcccCCcchhhhHHh-----------------hh------
Confidence 9999998752 223 999998754 466778888999999999877643210 00
Q ss_pred CCCCCCCHHHHHHHHHhCCCcEEEEEecCCCc
Q 016921 292 YLPAWCSTADYVKLLQSLSLEDIKAEDWSQNV 323 (380)
Q Consensus 292 ~~~~~~~~~~~~~ll~~aGf~~v~~~~~~~~~ 323 (380)
--..+.+......|+.++.+..+..+.
T Consensus 174 -----~e~~e~~~a~~~~~~~~~~~~~~~~p~ 200 (215)
T COG0357 174 -----DELPEAEKAILPLGGQVEKVFSLTVPE 200 (215)
T ss_pred -----hhHHHHHHHHHhhcCcEEEEEEeecCC
Confidence 013456677777899988887776654
No 200
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=98.55 E-value=7e-07 Score=85.33 Aligned_cols=117 Identities=17% Similarity=0.155 Sum_probs=81.8
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEE
Q 016921 134 HRAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQ 213 (380)
Q Consensus 134 ~~~~~~~~~~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~ 213 (380)
.......+++.+...+... +.+|||++||+|.++..+++. ..+|+|+|+++.+++.+++++...++ .+++|+
T Consensus 188 N~~~~e~l~~~v~~~~~~~------~~~vLDl~~G~G~~sl~la~~-~~~v~~vE~~~~ai~~a~~N~~~~~~-~~v~~~ 259 (362)
T PRK05031 188 NAAVNEKMLEWALDATKGS------KGDLLELYCGNGNFTLALARN-FRRVLATEISKPSVAAAQYNIAANGI-DNVQII 259 (362)
T ss_pred CHHHHHHHHHHHHHHhhcC------CCeEEEEeccccHHHHHHHhh-CCEEEEEECCHHHHHHHHHHHHHhCC-CcEEEE
Confidence 3444555666666554321 357999999999999999886 56999999999999999999988887 489999
Q ss_pred EcCCCCC-C-CC--------------CCCccEEEeccccCCCCCHHHHHHHHHHhcCCCcEEEEEe
Q 016921 214 VGDALQQ-P-FP--------------DGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 214 ~~d~~~~-~-~~--------------~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~ 263 (380)
.+|+.+. + +. ..+||+|+..=- . -.-...+++.+.+ |++.++++.
T Consensus 260 ~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~D~v~lDPP-R-~G~~~~~l~~l~~---~~~ivyvSC 320 (362)
T PRK05031 260 RMSAEEFTQAMNGVREFNRLKGIDLKSYNFSTIFVDPP-R-AGLDDETLKLVQA---YERILYISC 320 (362)
T ss_pred ECCHHHHHHHHhhcccccccccccccCCCCCEEEECCC-C-CCCcHHHHHHHHc---cCCEEEEEe
Confidence 9998763 1 10 125899887321 1 0112345555544 678777765
No 201
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.54 E-value=9.7e-06 Score=67.56 Aligned_cols=126 Identities=17% Similarity=0.275 Sum_probs=92.2
Q ss_pred CCEEEEECCCcChHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEEecccc
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESG 236 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~--~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l 236 (380)
..-+||||||+|..+..+++.. +..+.++|++|..++..++.+..++. ++..++.|+..- +..++.|+++.+--.
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~--~~~~V~tdl~~~-l~~~~VDvLvfNPPY 120 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRV--HIDVVRTDLLSG-LRNESVDVLVFNPPY 120 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCC--ccceeehhHHhh-hccCCccEEEECCCc
Confidence 6779999999999999999877 56789999999999998888877664 578888887663 334888888764211
Q ss_pred C-----CC------------CC----HHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCC
Q 016921 237 E-----HM------------PD----KSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPA 295 (380)
Q Consensus 237 ~-----~~------------~~----~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (380)
- -+ .+ .++++..+-.+|.|.|.+++.....
T Consensus 121 Vpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~----------------------------- 171 (209)
T KOG3191|consen 121 VPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALRA----------------------------- 171 (209)
T ss_pred CcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehhh-----------------------------
Confidence 0 00 01 2456677778888999998875311
Q ss_pred CCCHHHHHHHHHhCCCcEEEEE
Q 016921 296 WCSTADYVKLLQSLSLEDIKAE 317 (380)
Q Consensus 296 ~~~~~~~~~ll~~aGf~~v~~~ 317 (380)
-.++++.+.++.-||......
T Consensus 172 -N~p~ei~k~l~~~g~~~~~~~ 192 (209)
T KOG3191|consen 172 -NKPKEILKILEKKGYGVRIAM 192 (209)
T ss_pred -cCHHHHHHHHhhcccceeEEE
Confidence 135778888999998866544
No 202
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=98.52 E-value=6e-07 Score=80.41 Aligned_cols=93 Identities=24% Similarity=0.286 Sum_probs=75.0
Q ss_pred HHHHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCC
Q 016921 139 VRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDAL 218 (380)
Q Consensus 139 ~~~~~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~ 218 (380)
...++++++.+.+.+ +..|||||+|.|.++..|+++ +..|+++++++.+++..+++.. ..++++++.+|+.
T Consensus 16 ~~v~~kIv~~a~~~~-----~d~VlEIGpG~GaLT~~Ll~~-~~~v~aiEiD~~l~~~L~~~~~---~~~n~~vi~~DaL 86 (259)
T COG0030 16 KNVIDKIVEAANISP-----GDNVLEIGPGLGALTEPLLER-AARVTAIEIDRRLAEVLKERFA---PYDNLTVINGDAL 86 (259)
T ss_pred HHHHHHHHHhcCCCC-----CCeEEEECCCCCHHHHHHHhh-cCeEEEEEeCHHHHHHHHHhcc---cccceEEEeCchh
Confidence 346788888887764 899999999999999999998 7899999999999999888764 3368999999999
Q ss_pred CCCCCCC-CccEEEeccccCCCCC
Q 016921 219 QQPFPDG-QFDLVWSMESGEHMPD 241 (380)
Q Consensus 219 ~~~~~~~-~fD~V~~~~~l~~~~~ 241 (380)
..+++.- .++.|+++ .=+++..
T Consensus 87 k~d~~~l~~~~~vVaN-lPY~Iss 109 (259)
T COG0030 87 KFDFPSLAQPYKVVAN-LPYNISS 109 (259)
T ss_pred cCcchhhcCCCEEEEc-CCCcccH
Confidence 9887643 57777764 3344433
No 203
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=98.52 E-value=3.2e-07 Score=83.85 Aligned_cols=105 Identities=23% Similarity=0.254 Sum_probs=78.9
Q ss_pred CCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCC-CCeEEEEcCCCCC-C--CCCCCccEEEec-
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLA-DKVSFQVGDALQQ-P--FPDGQFDLVWSM- 233 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~-~~v~~~~~d~~~~-~--~~~~~fD~V~~~- 233 (380)
+.+|||+=|=||.++...+.....+|+.||.|..+++.+++++..+++. .+++|+..|+.+. . -..++||+|++.
T Consensus 124 gkrvLnlFsYTGgfsv~Aa~gGA~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~~~~~fD~IIlDP 203 (286)
T PF10672_consen 124 GKRVLNLFSYTGGFSVAAAAGGAKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLKKGGRFDLIILDP 203 (286)
T ss_dssp TCEEEEET-TTTHHHHHHHHTTESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHHHTT-EEEEEE--
T ss_pred CCceEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHhcCCCCCEEEECC
Confidence 7899999999999999887652348999999999999999999999875 6899999998763 1 124689999972
Q ss_pred --cccCC---CCCHHHHHHHHHHhcCCCcEEEEEe
Q 016921 234 --ESGEH---MPDKSKFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 234 --~~l~~---~~~~~~~l~~~~r~LkpgG~l~~~~ 263 (380)
+.=.. ..+...++..+.++|+|||.|+++.
T Consensus 204 PsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~s 238 (286)
T PF10672_consen 204 PSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCS 238 (286)
T ss_dssp SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEc
Confidence 11011 1345678999999999999988776
No 204
>PRK04148 hypothetical protein; Provisional
Probab=98.51 E-value=7.9e-07 Score=71.49 Aligned_cols=94 Identities=21% Similarity=0.270 Sum_probs=69.7
Q ss_pred CCEEEEECCCcCh-HHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCC-CCCccEEEecccc
Q 016921 159 PKNVVDVGCGIGG-SSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFP-DGQFDLVWSMESG 236 (380)
Q Consensus 159 ~~~vLDiGcGtG~-~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~~fD~V~~~~~l 236 (380)
+.+|||||||+|. .+..|++. |..|+++|+++..++.+++. .+.++.+|+.+.++. -+.+|+|++..
T Consensus 17 ~~kileIG~GfG~~vA~~L~~~-G~~ViaIDi~~~aV~~a~~~--------~~~~v~dDlf~p~~~~y~~a~liysir-- 85 (134)
T PRK04148 17 NKKIVELGIGFYFKVAKKLKES-GFDVIVIDINEKAVEKAKKL--------GLNAFVDDLFNPNLEIYKNAKLIYSIR-- 85 (134)
T ss_pred CCEEEEEEecCCHHHHHHHHHC-CCEEEEEECCHHHHHHHHHh--------CCeEEECcCCCCCHHHHhcCCEEEEeC--
Confidence 6899999999996 88888865 89999999999988877653 378999999886532 36789988753
Q ss_pred CCCCCHHHHHHHHHHhcCCCcEEEEEeccC
Q 016921 237 EHMPDKSKFVSELARVTAPAGTIIIVTWCH 266 (380)
Q Consensus 237 ~~~~~~~~~l~~~~r~LkpgG~l~~~~~~~ 266 (380)
--++.+..+.++++. -|.-+++..++.
T Consensus 86 -pp~el~~~~~~la~~--~~~~~~i~~l~~ 112 (134)
T PRK04148 86 -PPRDLQPFILELAKK--INVPLIIKPLSG 112 (134)
T ss_pred -CCHHHHHHHHHHHHH--cCCCEEEEcCCC
Confidence 223555566666664 356677766543
No 205
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=98.50 E-value=2e-06 Score=78.92 Aligned_cols=121 Identities=21% Similarity=0.194 Sum_probs=77.3
Q ss_pred HHHHHHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEE
Q 016921 137 AQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQV 214 (380)
Q Consensus 137 ~~~~~~~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~--~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~ 214 (380)
...+.+.++-...+. -.+.+|||+|||.|..+..+.+.+ -.+++++|.|+.|++.++..+..........+..
T Consensus 17 ~~~~vl~El~~r~p~-----f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~~~ 91 (274)
T PF09243_consen 17 AVYRVLSELRKRLPD-----FRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEWRR 91 (274)
T ss_pred HHHHHHHHHHHhCcC-----CCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccccccchhhh
Confidence 334455555444322 237899999999998776666654 3579999999999999999876432211111111
Q ss_pred cCCCCCCCCCCCccEEEeccccCCCCC--HHHHHHHHHHhcCCCcEEEEEecc
Q 016921 215 GDALQQPFPDGQFDLVWSMESGEHMPD--KSKFVSELARVTAPAGTIIIVTWC 265 (380)
Q Consensus 215 ~d~~~~~~~~~~fD~V~~~~~l~~~~~--~~~~l~~~~r~LkpgG~l~~~~~~ 265 (380)
....+. .+-...|+|++.++|..+++ ...+++.+.+.+.+ .|+++|.+
T Consensus 92 ~~~~~~-~~~~~~DLvi~s~~L~EL~~~~r~~lv~~LW~~~~~--~LVlVEpG 141 (274)
T PF09243_consen 92 VLYRDF-LPFPPDDLVIASYVLNELPSAARAELVRSLWNKTAP--VLVLVEPG 141 (274)
T ss_pred hhhccc-ccCCCCcEEEEehhhhcCCchHHHHHHHHHHHhccC--cEEEEcCC
Confidence 111111 11223499999999999976 34566666666655 89998854
No 206
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=98.48 E-value=5.2e-07 Score=82.91 Aligned_cols=88 Identities=16% Similarity=0.191 Sum_probs=71.7
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCC
Q 016921 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDAL 218 (380)
Q Consensus 141 ~~~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~--~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~ 218 (380)
+++++++.+.+.+ +..+||.+||.|..+..+++.. ..+|+|+|.++.+++.+++++.+ ..++.++++|+.
T Consensus 7 ll~Evl~~L~~~p-----g~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~---~~ri~~i~~~f~ 78 (296)
T PRK00050 7 LLDEVVDALAIKP-----DGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP---FGRFTLVHGNFS 78 (296)
T ss_pred cHHHHHHhhCCCC-----CCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc---CCcEEEEeCCHH
Confidence 5677777776554 7899999999999999999987 37999999999999999988754 368999999998
Q ss_pred CCC--CCC--CCccEEEecccc
Q 016921 219 QQP--FPD--GQFDLVWSMESG 236 (380)
Q Consensus 219 ~~~--~~~--~~fD~V~~~~~l 236 (380)
++. .+. .++|.|++....
T Consensus 79 ~l~~~l~~~~~~vDgIl~DLGv 100 (296)
T PRK00050 79 NLKEVLAEGLGKVDGILLDLGV 100 (296)
T ss_pred HHHHHHHcCCCccCEEEECCCc
Confidence 753 122 279999987554
No 207
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=98.48 E-value=2.3e-06 Score=83.93 Aligned_cols=106 Identities=17% Similarity=0.208 Sum_probs=84.4
Q ss_pred CCCEEEEECCCcChHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-CCCCCccEEEe--
Q 016921 158 RPKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-FPDGQFDLVWS-- 232 (380)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~--~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-~~~~~fD~V~~-- 232 (380)
++.+|||+++|.|.=+..+++.. ...|+++|+++.-+...++++...|+ .++.+...|...+. ...+.||.|++
T Consensus 113 pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~-~nv~v~~~D~~~~~~~~~~~fD~ILvDa 191 (470)
T PRK11933 113 APQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGV-SNVALTHFDGRVFGAALPETFDAILLDA 191 (470)
T ss_pred CCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCC-CeEEEEeCchhhhhhhchhhcCeEEEcC
Confidence 58999999999999999999877 35899999999999999999999888 47888889987653 22467999994
Q ss_pred --c--cccCCCCCH----------------HHHHHHHHHhcCCCcEEEEEec
Q 016921 233 --M--ESGEHMPDK----------------SKFVSELARVTAPAGTIIIVTW 264 (380)
Q Consensus 233 --~--~~l~~~~~~----------------~~~l~~~~r~LkpgG~l~~~~~ 264 (380)
. +++..-++. .++|..+.+.|||||+|+-++-
T Consensus 192 PCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTC 243 (470)
T PRK11933 192 PCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTC 243 (470)
T ss_pred CCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECC
Confidence 3 222221211 4688899999999999988764
No 208
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=98.46 E-value=3.7e-06 Score=69.74 Aligned_cols=103 Identities=37% Similarity=0.495 Sum_probs=75.5
Q ss_pred EEEECCCcChHHHHHHHHcC--CEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCC--CCCCC-CCccEEEecccc
Q 016921 162 VVDVGCGIGGSSRYLAKKFG--AKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ--QPFPD-GQFDLVWSMESG 236 (380)
Q Consensus 162 vLDiGcGtG~~~~~l~~~~~--~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~--~~~~~-~~fD~V~~~~~l 236 (380)
++|+|||+|... .+..... ..++|+|+++.++..++..... .....+.+...|... .++.. ..||++ +....
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-~~~~~ 128 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEG-AGLGLVDFVVADALGGVLPFEDSASFDLV-ISLLV 128 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhh-cCCCceEEEEeccccCCCCCCCCCceeEE-eeeee
Confidence 999999999977 3333322 4899999999999985554432 211116888888776 67766 489999 55544
Q ss_pred CCCCCHHHHHHHHHHhcCCCcEEEEEeccCC
Q 016921 237 EHMPDKSKFVSELARVTAPAGTIIIVTWCHR 267 (380)
Q Consensus 237 ~~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~ 267 (380)
.+..+....+.++.+.|+|+|.+++......
T Consensus 129 ~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~ 159 (257)
T COG0500 129 LHLLPPAKALRELLRVLKPGGRLVLSDLLRD 159 (257)
T ss_pred hhcCCHHHHHHHHHHhcCCCcEEEEEeccCC
Confidence 4443488999999999999999999886543
No 209
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.45 E-value=3.3e-06 Score=81.90 Aligned_cols=120 Identities=25% Similarity=0.355 Sum_probs=91.1
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEE
Q 016921 134 HRAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQ 213 (380)
Q Consensus 134 ~~~~~~~~~~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~ 213 (380)
.......++...++++.... +.+|||+=||.|.+++.+|++ ..+|+|+|+++++++.|+++++.+++. |+.|.
T Consensus 274 N~~~~ekl~~~a~~~~~~~~-----~~~vlDlYCGvG~f~l~lA~~-~~~V~gvEi~~~aV~~A~~NA~~n~i~-N~~f~ 346 (432)
T COG2265 274 NPAVAEKLYETALEWLELAG-----GERVLDLYCGVGTFGLPLAKR-VKKVHGVEISPEAVEAAQENAAANGID-NVEFI 346 (432)
T ss_pred CHHHHHHHHHHHHHHHhhcC-----CCEEEEeccCCChhhhhhccc-CCEEEEEecCHHHHHHHHHHHHHcCCC-cEEEE
Confidence 45566777788888876544 789999999999999999976 789999999999999999999999985 59999
Q ss_pred EcCCCCCCC---CCCCccEEEeccccCCCCCHHHHHHHHHHhcCCCcEEEEEe
Q 016921 214 VGDALQQPF---PDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 214 ~~d~~~~~~---~~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~ 263 (380)
.+++++... ....+|.|+..=-=.- -...+++.+.+ ++|-.+++++.
T Consensus 347 ~~~ae~~~~~~~~~~~~d~VvvDPPR~G--~~~~~lk~l~~-~~p~~IvYVSC 396 (432)
T COG2265 347 AGDAEEFTPAWWEGYKPDVVVVDPPRAG--ADREVLKQLAK-LKPKRIVYVSC 396 (432)
T ss_pred eCCHHHHhhhccccCCCCEEEECCCCCC--CCHHHHHHHHh-cCCCcEEEEeC
Confidence 999998642 2357899987200000 00244554444 57888888875
No 210
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.42 E-value=2.8e-07 Score=73.56 Aligned_cols=77 Identities=19% Similarity=0.223 Sum_probs=63.8
Q ss_pred CCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEEecccc
Q 016921 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESG 236 (380)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l 236 (380)
.+.+++|+|||+|.+....+.--...|.|+|++++.++.+++++.+..+ ++.+.++|+.++.+..+.||.++.+--+
T Consensus 48 Egkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALEIf~rNaeEfEv--qidlLqcdildle~~~g~fDtaviNppF 124 (185)
T KOG3420|consen 48 EGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEIFTRNAEEFEV--QIDLLQCDILDLELKGGIFDTAVINPPF 124 (185)
T ss_pred cCcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHHHHHhhchHHhhh--hhheeeeeccchhccCCeEeeEEecCCC
Confidence 3889999999999998555442256899999999999999999987665 5789999999887677899999886544
No 211
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=98.42 E-value=1.2e-06 Score=78.96 Aligned_cols=105 Identities=20% Similarity=0.288 Sum_probs=78.8
Q ss_pred CCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCC---CCCeEEEEcCCCCC-CCCCC-CccEEEe
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGL---ADKVSFQVGDALQQ-PFPDG-QFDLVWS 232 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~---~~~v~~~~~d~~~~-~~~~~-~fD~V~~ 232 (380)
+.+||=||.|.|..+..+.+.. ..+++++|+++.+++.+++.+..... .++++++.+|+... .-..+ +||+|+.
T Consensus 77 p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDvIi~ 156 (246)
T PF01564_consen 77 PKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDVIIV 156 (246)
T ss_dssp T-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEEEEE
T ss_pred cCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccEEEE
Confidence 8899999999999999998764 47999999999999999998765321 36899999998663 11123 8999997
Q ss_pred ccccCCCCC----HHHHHHHHHHhcCCCcEEEEEe
Q 016921 233 MESGEHMPD----KSKFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 233 ~~~l~~~~~----~~~~l~~~~r~LkpgG~l~~~~ 263 (380)
...-...+. ...+++.+.+.|+|||.+++..
T Consensus 157 D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~ 191 (246)
T PF01564_consen 157 DLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQA 191 (246)
T ss_dssp ESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEE
T ss_pred eCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEc
Confidence 443211111 2589999999999999999865
No 212
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=98.40 E-value=2.1e-06 Score=78.51 Aligned_cols=103 Identities=18% Similarity=0.288 Sum_probs=82.7
Q ss_pred CCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcC--C-CCCeEEEEcCCCCCC-CCCCCccEEEec
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARG--L-ADKVSFQVGDALQQP-FPDGQFDLVWSM 233 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~-~~~v~giD~s~~~~~~a~~~~~~~~--~-~~~v~~~~~d~~~~~-~~~~~fD~V~~~ 233 (380)
+.+||-||.|.|.++..+++.. ..+++.+|+++..++.+++.+.... . .++++++..|..+.- -..++||+|++.
T Consensus 77 pk~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDvIi~D 156 (282)
T COG0421 77 PKRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDVIIVD 156 (282)
T ss_pred CCeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCEEEEc
Confidence 3699999999999999999976 5899999999999999999885532 2 378999999987752 123489999975
Q ss_pred cccCCC-C----CHHHHHHHHHHhcCCCcEEEEE
Q 016921 234 ESGEHM-P----DKSKFVSELARVTAPAGTIIIV 262 (380)
Q Consensus 234 ~~l~~~-~----~~~~~l~~~~r~LkpgG~l~~~ 262 (380)
..=. . + .-..+++.+++.|+++|.++..
T Consensus 157 ~tdp-~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q 189 (282)
T COG0421 157 STDP-VGPAEALFTEEFYEGCRRALKEDGIFVAQ 189 (282)
T ss_pred CCCC-CCcccccCCHHHHHHHHHhcCCCcEEEEe
Confidence 4333 2 1 1268999999999999999987
No 213
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=98.38 E-value=1.8e-07 Score=79.21 Aligned_cols=96 Identities=21% Similarity=0.310 Sum_probs=73.3
Q ss_pred CCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEEecccc
Q 016921 157 KRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESG 236 (380)
Q Consensus 157 ~~~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l 236 (380)
..+.++||+|.|.|..+..++..+ .+|++.++|..|....+++ + .++. ...+..-.+-+||+|.|...+
T Consensus 111 ~~~~~lLDlGAGdGeit~~m~p~f-eevyATElS~tMr~rL~kk----~----ynVl--~~~ew~~t~~k~dli~clNlL 179 (288)
T KOG3987|consen 111 QEPVTLLDLGAGDGEITLRMAPTF-EEVYATELSWTMRDRLKKK----N----YNVL--TEIEWLQTDVKLDLILCLNLL 179 (288)
T ss_pred CCCeeEEeccCCCcchhhhhcchH-HHHHHHHhhHHHHHHHhhc----C----Ccee--eehhhhhcCceeehHHHHHHH
Confidence 346899999999999999998864 5688999999998776542 2 1111 112211123579999999999
Q ss_pred CCCCCHHHHHHHHHHhcCC-CcEEEEEe
Q 016921 237 EHMPDKSKFVSELARVTAP-AGTIIIVT 263 (380)
Q Consensus 237 ~~~~~~~~~l~~~~r~Lkp-gG~l~~~~ 263 (380)
.-.-++-++++.++.+|+| +|++++.-
T Consensus 180 DRc~~p~kLL~Di~~vl~psngrvivaL 207 (288)
T KOG3987|consen 180 DRCFDPFKLLEDIHLVLAPSNGRVIVAL 207 (288)
T ss_pred HhhcChHHHHHHHHHHhccCCCcEEEEE
Confidence 8778999999999999999 89888764
No 214
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=98.38 E-value=8.4e-07 Score=76.25 Aligned_cols=105 Identities=18% Similarity=0.132 Sum_probs=78.4
Q ss_pred CCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC----CCCCCCccEEEecc
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ----PFPDGQFDLVWSME 234 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~----~~~~~~fD~V~~~~ 234 (380)
+.+|||+-||+|.+++..+.+...+|+.||.++..+...+++++..+...++.++..|+... .....+||+|++.=
T Consensus 43 g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiIflDP 122 (183)
T PF03602_consen 43 GARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAKKGEKFDIIFLDP 122 (183)
T ss_dssp T-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHHCTS-EEEEEE--
T ss_pred CCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhcccCCCceEEEECC
Confidence 89999999999999999988855699999999999999999999988877799999996542 12468999998752
Q ss_pred ccCCCCC-HHHHHHHHH--HhcCCCcEEEEEec
Q 016921 235 SGEHMPD-KSKFVSELA--RVTAPAGTIIIVTW 264 (380)
Q Consensus 235 ~l~~~~~-~~~~l~~~~--r~LkpgG~l~~~~~ 264 (380)
=+.... ...++..+. .+|+++|.+++-..
T Consensus 123 -PY~~~~~~~~~l~~l~~~~~l~~~~~ii~E~~ 154 (183)
T PF03602_consen 123 -PYAKGLYYEELLELLAENNLLNEDGLIIIEHS 154 (183)
T ss_dssp -STTSCHHHHHHHHHHHHTTSEEEEEEEEEEEE
T ss_pred -CcccchHHHHHHHHHHHCCCCCCCEEEEEEec
Confidence 222233 367788777 78999998888653
No 215
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=98.37 E-value=3.2e-06 Score=78.80 Aligned_cols=106 Identities=19% Similarity=0.150 Sum_probs=91.2
Q ss_pred CCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEEeccccC
Q 016921 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGE 237 (380)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~ 237 (380)
+|.+|||.=+|-|.+++.+|......|+++|++|..++..++++..+++...+..+++|+......-+.+|.|++..
T Consensus 188 ~GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~~~~aDrIim~~--- 264 (341)
T COG2520 188 EGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPELGVADRIIMGL--- 264 (341)
T ss_pred CCCEEEEccCCcccchhhhhhcCCceEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhccccCCEEEeCC---
Confidence 38999999999999999999974334999999999999999999999998789999999999865448899999864
Q ss_pred CCCCHHHHHHHHHHhcCCCcEEEEEeccCC
Q 016921 238 HMPDKSKFVSELARVTAPAGTIIIVTWCHR 267 (380)
Q Consensus 238 ~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~ 267 (380)
..+...++..+.+.+++||.+-..++...
T Consensus 265 -p~~a~~fl~~A~~~~k~~g~iHyy~~~~e 293 (341)
T COG2520 265 -PKSAHEFLPLALELLKDGGIIHYYEFVPE 293 (341)
T ss_pred -CCcchhhHHHHHHHhhcCcEEEEEeccch
Confidence 33556788999999999999999886543
No 216
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=98.37 E-value=7.2e-06 Score=74.39 Aligned_cols=159 Identities=21% Similarity=0.362 Sum_probs=91.2
Q ss_pred hhHHHHHHHHHHHhccchhhHHHhhccccc-----------ccccCCCCCCCcccHHHHHHHHHHHHHHHcCCCCCCCCC
Q 016921 90 AAARELKEGIAEFYDESSSLWEDIWGDHMH-----------HGFYEPDSSVSVSDHRAAQVRMIEETLRFAGVSEDPTKR 158 (380)
Q Consensus 90 ~~~~~~~~~i~~~yd~~~~~y~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~ 158 (380)
..++++...+...+......++..|...+. |.|| .-..++++.=+..+.... ...
T Consensus 55 ~~i~~~~~~L~~~~~~ae~~LE~~~A~~l~~~~~p~~~L~~FpYy------------~nY~~L~~lE~~~l~~~~--~~~ 120 (276)
T PF03059_consen 55 PEIQSIRPSLRRLCSEAEGLLESHWAKRLLASDNPLDHLESFPYY------------PNYEKLVRLEYAALRIHA--GDP 120 (276)
T ss_dssp GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHH-SSHHHHHHTSTTH------------HHHHHHHHHHHH-HTT----TT-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhcCCcH------------HHHHHHHHHHHHHHhhcC--Ccc
Confidence 667777777777776655555554443221 2222 222333333333333222 012
Q ss_pred CCEEEEECCCcChH-HHHHHHHc--CCEEEEEeCCHHHHHHHHHHHH-HcCCCCCeEEEEcCCCCCCCCCCCccEEEecc
Q 016921 159 PKNVVDVGCGIGGS-SRYLAKKF--GAKCQGITLSPVQAQRANALAA-ARGLADKVSFQVGDALQQPFPDGQFDLVWSME 234 (380)
Q Consensus 159 ~~~vLDiGcGtG~~-~~~l~~~~--~~~v~giD~s~~~~~~a~~~~~-~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~ 234 (380)
+.+|+=||||.=-+ ++.+++.+ +..|+++|+++...+.+++... ..++..++.|+.+|..+.+..-..||+|+...
T Consensus 121 p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV~lAa 200 (276)
T PF03059_consen 121 PSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDLKEYDVVFLAA 200 (276)
T ss_dssp --EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----SEEEE-T
T ss_pred cceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccccccCCEEEEhh
Confidence 56999999996554 45566554 5789999999999999999887 45677889999999987654447899998765
Q ss_pred ccCCC-CCHHHHHHHHHHhcCCCcEEEEE
Q 016921 235 SGEHM-PDKSKFVSELARVTAPAGTIIIV 262 (380)
Q Consensus 235 ~l~~~-~~~~~~l~~~~r~LkpgG~l~~~ 262 (380)
...-- .++.+++..+.+.++||..+++=
T Consensus 201 lVg~~~e~K~~Il~~l~~~m~~ga~l~~R 229 (276)
T PF03059_consen 201 LVGMDAEPKEEILEHLAKHMAPGARLVVR 229 (276)
T ss_dssp T-S----SHHHHHHHHHHHS-TTSEEEEE
T ss_pred hcccccchHHHHHHHHHhhCCCCcEEEEe
Confidence 44322 37899999999999999988885
No 217
>PRK00536 speE spermidine synthase; Provisional
Probab=98.36 E-value=4.7e-06 Score=75.28 Aligned_cols=97 Identities=13% Similarity=0.045 Sum_probs=75.4
Q ss_pred CCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHc--C-CCCCeEEEEcCCCCCCCCCCCccEEEecc
Q 016921 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAAR--G-LADKVSFQVGDALQQPFPDGQFDLVWSME 234 (380)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~--~-~~~~v~~~~~d~~~~~~~~~~fD~V~~~~ 234 (380)
.+.+||=||.|.|..++.++++ ..+|+.+|+++.+++.+++.+... + -.+|++++.. +.+ -..++||+|++-.
T Consensus 72 ~pk~VLIiGGGDGg~~REvLkh-~~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~-~~~--~~~~~fDVIIvDs 147 (262)
T PRK00536 72 ELKEVLIVDGFDLELAHQLFKY-DTHVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ-LLD--LDIKKYDLIICLQ 147 (262)
T ss_pred CCCeEEEEcCCchHHHHHHHCc-CCeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh-hhh--ccCCcCCEEEEcC
Confidence 3799999999999999999997 569999999999999999965432 1 1357777652 211 1237899999764
Q ss_pred ccCCCCCHHHHHHHHHHhcCCCcEEEEEe
Q 016921 235 SGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 235 ~l~~~~~~~~~l~~~~r~LkpgG~l~~~~ 263 (380)
. ....+++.+++.|+|||.++...
T Consensus 148 ~-----~~~~fy~~~~~~L~~~Gi~v~Qs 171 (262)
T PRK00536 148 E-----PDIHKIDGLKRMLKEDGVFISVA 171 (262)
T ss_pred C-----CChHHHHHHHHhcCCCcEEEECC
Confidence 3 33678899999999999999854
No 218
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=98.35 E-value=5.4e-06 Score=72.39 Aligned_cols=123 Identities=20% Similarity=0.256 Sum_probs=88.2
Q ss_pred EEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCC-CccEEEeccccCCC
Q 016921 162 VVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDG-QFDLVWSMESGEHM 239 (380)
Q Consensus 162 vLDiGcGtG~~~~~l~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~-~fD~V~~~~~l~~~ 239 (380)
|.||||-.|.+...|.+.. ..+++++|+++.-++.|++.+...++.+++++..+|-.+. ++.+ ..|.|+..++=..
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~-l~~~e~~d~ivIAGMGG~- 78 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEV-LKPGEDVDTIVIAGMGGE- 78 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG---GGG---EEEEEEE-HH-
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccc-cCCCCCCCEEEEecCCHH-
Confidence 6899999999999999985 3479999999999999999999999999999999996552 2333 4899988765432
Q ss_pred CCHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCcEEEEEec
Q 016921 240 PDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAEDW 319 (380)
Q Consensus 240 ~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v~~~~~ 319 (380)
-...++.+....++....|++.-. .....++++|.+.||.+++..-.
T Consensus 79 -lI~~ILe~~~~~~~~~~~lILqP~--------------------------------~~~~~LR~~L~~~gf~I~~E~lv 125 (205)
T PF04816_consen 79 -LIIEILEAGPEKLSSAKRLILQPN--------------------------------THAYELRRWLYENGFEIIDEDLV 125 (205)
T ss_dssp -HHHHHHHHTGGGGTT--EEEEEES--------------------------------S-HHHHHHHHHHTTEEEEEEEEE
T ss_pred -HHHHHHHhhHHHhccCCeEEEeCC--------------------------------CChHHHHHHHHHCCCEEEEeEEE
Confidence 235666666667766667777531 24678999999999999886543
No 219
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.31 E-value=3.8e-07 Score=74.23 Aligned_cols=137 Identities=9% Similarity=0.136 Sum_probs=96.9
Q ss_pred CCEEEEECCC-cChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCC--CCeEEEEcCCCCC--CCCCCCccEEEe
Q 016921 159 PKNVVDVGCG-IGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLA--DKVSFQVGDALQQ--PFPDGQFDLVWS 232 (380)
Q Consensus 159 ~~~vLDiGcG-tG~~~~~l~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~--~~v~~~~~d~~~~--~~~~~~fD~V~~ 232 (380)
+.+|||+|.| +|.-++.+|... ...|...|-+++.+...++....+... .++.....+...- ..+..+||+|++
T Consensus 30 g~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~aqsq~eq~tFDiIla 109 (201)
T KOG3201|consen 30 GRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGAQSQQEQHTFDIILA 109 (201)
T ss_pred HHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhhhHHHHhhCcccEEEe
Confidence 7889999999 666667777655 678999999999988887766443211 1222222222111 123468999999
Q ss_pred ccccCCCCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCc
Q 016921 233 MESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLE 312 (380)
Q Consensus 233 ~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~ 312 (380)
...+..-.....+++.+...|+|.|..++.. |. +-.+.+.+.+.....||.
T Consensus 110 ADClFfdE~h~sLvdtIk~lL~p~g~Al~fs-------PR----------------------Rg~sL~kF~de~~~~gf~ 160 (201)
T KOG3201|consen 110 ADCLFFDEHHESLVDTIKSLLRPSGRALLFS-------PR----------------------RGQSLQKFLDEVGTVGFT 160 (201)
T ss_pred ccchhHHHHHHHHHHHHHHHhCcccceeEec-------Cc----------------------ccchHHHHHHHHHhceeE
Confidence 9888665556789999999999999977754 11 124677788889999999
Q ss_pred EEEEEecCCCcC
Q 016921 313 DIKAEDWSQNVA 324 (380)
Q Consensus 313 ~v~~~~~~~~~~ 324 (380)
+.-.+++...++
T Consensus 161 v~l~enyde~iw 172 (201)
T KOG3201|consen 161 VCLEENYDEAIW 172 (201)
T ss_pred EEecccHhHHHH
Confidence 988887776653
No 220
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=98.30 E-value=1e-06 Score=73.52 Aligned_cols=71 Identities=28% Similarity=0.517 Sum_probs=55.7
Q ss_pred EEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC--CCCCC-ccEEEe
Q 016921 161 NVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP--FPDGQ-FDLVWS 232 (380)
Q Consensus 161 ~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--~~~~~-fD~V~~ 232 (380)
.|+|+.||.|..++.+|+. ..+|+++|+++..++.|+.++...|+.++|.|+++|+.+.. +.... ||+|++
T Consensus 2 ~vlD~fcG~GGNtIqFA~~-~~~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFl 75 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFART-FDRVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFL 75 (163)
T ss_dssp EEEETT-TTSHHHHHHHHT-T-EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE
T ss_pred EEEEeccCcCHHHHHHHHh-CCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEE
Confidence 6999999999999999997 67999999999999999999999999889999999987752 22222 799987
No 221
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=98.29 E-value=1.9e-05 Score=73.64 Aligned_cols=117 Identities=12% Similarity=0.105 Sum_probs=83.4
Q ss_pred HHHHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHc-----CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEE-
Q 016921 139 VRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF-----GAKCQGITLSPVQAQRANALAAARGLADKVSF- 212 (380)
Q Consensus 139 ~~~~~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~-----~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~- 212 (380)
++....+...++ ++..|+|+|||.|.=+..|.+.+ ...++++|+|.++++.+.+++..... +.+.+
T Consensus 64 ~~~~~~Ia~~i~-------~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~-p~l~v~ 135 (319)
T TIGR03439 64 KKHSSDIAASIP-------SGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNF-SHVRCA 135 (319)
T ss_pred HHHHHHHHHhcC-------CCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccC-CCeEEE
Confidence 444445555442 36789999999999777666655 36799999999999999999874444 34555
Q ss_pred -EEcCCCCC----CC--CCCCccEEEec-cccCCCCCH--HHHHHHHHH-hcCCCcEEEEEe
Q 016921 213 -QVGDALQQ----PF--PDGQFDLVWSM-ESGEHMPDK--SKFVSELAR-VTAPAGTIIIVT 263 (380)
Q Consensus 213 -~~~d~~~~----~~--~~~~fD~V~~~-~~l~~~~~~--~~~l~~~~r-~LkpgG~l~~~~ 263 (380)
+++|+.+. +- ......+|+.. .++.+++.. ..+++++++ .|+|||.|++..
T Consensus 136 ~l~gdy~~~l~~l~~~~~~~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLiG~ 197 (319)
T TIGR03439 136 GLLGTYDDGLAWLKRPENRSRPTTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLIGL 197 (319)
T ss_pred EEEecHHHHHhhcccccccCCccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEEec
Confidence 78887653 21 12345666654 488888543 578999999 999999998864
No 222
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.27 E-value=7.5e-06 Score=70.57 Aligned_cols=110 Identities=24% Similarity=0.259 Sum_probs=78.7
Q ss_pred HHHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcC--CEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCC
Q 016921 140 RMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFG--AKCQGITLSPVQAQRANALAAARGLADKVSFQVGDA 217 (380)
Q Consensus 140 ~~~~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~--~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~ 217 (380)
..+.++.+...+- .++.+|+|||+-.|.|+..+++..+ ..|+|+|+.|.- ..++|.++++|+
T Consensus 31 ~KL~el~~k~~i~----~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~------------~~~~V~~iq~d~ 94 (205)
T COG0293 31 YKLLELNEKFKLF----KPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMK------------PIPGVIFLQGDI 94 (205)
T ss_pred HHHHHHHHhcCee----cCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccc------------cCCCceEEeeec
Confidence 3455555555432 2489999999999999999999874 349999998742 224699999999
Q ss_pred CCCC--------CCCCCccEEEecccc--------CCCCC---HHHHHHHHHHhcCCCcEEEEEecc
Q 016921 218 LQQP--------FPDGQFDLVWSMESG--------EHMPD---KSKFVSELARVTAPAGTIIIVTWC 265 (380)
Q Consensus 218 ~~~~--------~~~~~fD~V~~~~~l--------~~~~~---~~~~l~~~~r~LkpgG~l~~~~~~ 265 (380)
+..+ +....+|+|++-.+- .|... -..++.-+..+|+|||.+++-.+-
T Consensus 95 ~~~~~~~~l~~~l~~~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~fq 161 (205)
T COG0293 95 TDEDTLEKLLEALGGAPVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVFQ 161 (205)
T ss_pred cCccHHHHHHHHcCCCCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEEe
Confidence 8753 345568999964332 11110 135677788899999999998753
No 223
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=98.27 E-value=3.9e-06 Score=73.29 Aligned_cols=117 Identities=25% Similarity=0.310 Sum_probs=72.6
Q ss_pred HHHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCE-EEEEeCCHHHHHHHHHHHHH-------cCC-CCCe
Q 016921 140 RMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAK-CQGITLSPVQAQRANALAAA-------RGL-ADKV 210 (380)
Q Consensus 140 ~~~~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~-v~giD~s~~~~~~a~~~~~~-------~~~-~~~v 210 (380)
..+..+++.+.+.+ +...+|||||.|......+-..+++ ++||++.+...+.|+..... .|. ..++
T Consensus 29 ~~~~~il~~~~l~~-----~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v 103 (205)
T PF08123_consen 29 EFVSKILDELNLTP-----DDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKV 103 (205)
T ss_dssp HHHHHHHHHTT--T-----T-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EE
T ss_pred HHHHHHHHHhCCCC-----CCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccc
Confidence 35666777777665 8999999999999998887766655 99999999988777654322 232 3568
Q ss_pred EEEEcCCCCCCCCC---CCccEEEeccccCCCCCHHHHHHHHHHhcCCCcEEEEE
Q 016921 211 SFQVGDALQQPFPD---GQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIV 262 (380)
Q Consensus 211 ~~~~~d~~~~~~~~---~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~ 262 (380)
.+..+|+.+.++.. ..-|+|+++.... -++....+.+....||+|.+++..
T Consensus 104 ~l~~gdfl~~~~~~~~~s~AdvVf~Nn~~F-~~~l~~~L~~~~~~lk~G~~IIs~ 157 (205)
T PF08123_consen 104 ELIHGDFLDPDFVKDIWSDADVVFVNNTCF-DPDLNLALAELLLELKPGARIIST 157 (205)
T ss_dssp EEECS-TTTHHHHHHHGHC-SEEEE--TTT--HHHHHHHHHHHTTS-TT-EEEES
T ss_pred eeeccCccccHhHhhhhcCCCEEEEecccc-CHHHHHHHHHHHhcCCCCCEEEEC
Confidence 88899987643111 3468999877643 235566778888889998887653
No 224
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=98.26 E-value=1.1e-05 Score=76.99 Aligned_cols=99 Identities=12% Similarity=0.132 Sum_probs=82.2
Q ss_pred CCEEEEECCCcChHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-CCCCCccEEEeccc
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-FPDGQFDLVWSMES 235 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~--~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-~~~~~fD~V~~~~~ 235 (380)
+.+|||+-||+|..++.++.+. ..+|+++|+++..++.++++++.+++. ++++.+.|+..+- .....||+|...-
T Consensus 45 ~~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~-~~~v~~~Da~~~l~~~~~~fDvIdlDP- 122 (374)
T TIGR00308 45 YINIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVE-NIEVPNEDAANVLRYRNRKFHVIDIDP- 122 (374)
T ss_pred CCEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEchhHHHHHHHhCCCCCEEEeCC-
Confidence 4689999999999999999874 368999999999999999999887763 6889999987652 1236799998743
Q ss_pred cCCCCCHHHHHHHHHHhcCCCcEEEEE
Q 016921 236 GEHMPDKSKFVSELARVTAPAGTIIIV 262 (380)
Q Consensus 236 l~~~~~~~~~l~~~~r~LkpgG~l~~~ 262 (380)
+ ..+..++..+.+.+++||.|.++
T Consensus 123 f---Gs~~~fld~al~~~~~~glL~vT 146 (374)
T TIGR00308 123 F---GTPAPFVDSAIQASAERGLLLVT 146 (374)
T ss_pred C---CCcHHHHHHHHHhcccCCEEEEE
Confidence 2 35567999999999999999997
No 225
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.22 E-value=2e-05 Score=81.73 Aligned_cols=120 Identities=22% Similarity=0.212 Sum_probs=86.4
Q ss_pred HHHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHc---------------------------------------
Q 016921 140 RMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF--------------------------------------- 180 (380)
Q Consensus 140 ~~~~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~--------------------------------------- 180 (380)
.+...++...+... ++..++|..||+|.+.+..+...
T Consensus 176 tlAaa~l~~a~w~~----~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~ 251 (702)
T PRK11783 176 NLAAAILLRSGWPQ----EGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAG 251 (702)
T ss_pred HHHHHHHHHcCCCC----CCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhc
Confidence 35556666655421 37899999999999998876531
Q ss_pred ----CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCC--CCCccEEEeccccC-CCC---CHHHHHHHHH
Q 016921 181 ----GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFP--DGQFDLVWSMESGE-HMP---DKSKFVSELA 250 (380)
Q Consensus 181 ----~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~--~~~fD~V~~~~~l~-~~~---~~~~~l~~~~ 250 (380)
..+++|+|+++.+++.|++++...|+...+.|.++|+.+++.+ .++||+|+++=-.. -+. +...+.+.+.
T Consensus 252 ~~~~~~~i~G~Did~~av~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r~~~~~~l~~lY~~lg 331 (702)
T PRK11783 252 LAELPSKFYGSDIDPRVIQAARKNARRAGVAELITFEVKDVADLKNPLPKGPTGLVISNPPYGERLGEEPALIALYSQLG 331 (702)
T ss_pred ccccCceEEEEECCHHHHHHHHHHHHHcCCCcceEEEeCChhhcccccccCCCCEEEECCCCcCccCchHHHHHHHHHHH
Confidence 1269999999999999999999999988899999999887543 35799999873221 111 2334444444
Q ss_pred HhcC---CCcEEEEEe
Q 016921 251 RVTA---PAGTIIIVT 263 (380)
Q Consensus 251 r~Lk---pgG~l~~~~ 263 (380)
+.|| +|+.+++..
T Consensus 332 ~~lk~~~~g~~~~llt 347 (702)
T PRK11783 332 RRLKQQFGGWNAALFS 347 (702)
T ss_pred HHHHHhCCCCeEEEEe
Confidence 4444 888887755
No 226
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=98.22 E-value=7.5e-07 Score=76.73 Aligned_cols=110 Identities=23% Similarity=0.280 Sum_probs=70.4
Q ss_pred HHHHHHHHcC-CCCCCCCCCCEEEEECCCcChHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCC
Q 016921 141 MIEETLRFAG-VSEDPTKRPKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDA 217 (380)
Q Consensus 141 ~~~~ll~~~~-~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~--~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~ 217 (380)
.+.++++... +.. .++.+|||+||++|.|+..+.++. ...|+|+|+.+.. . ..++.++++|.
T Consensus 8 KL~ei~~~~~~~~~---~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~~-----------~-~~~~~~i~~d~ 72 (181)
T PF01728_consen 8 KLYEIDEKFKIFKP---GKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPMD-----------P-LQNVSFIQGDI 72 (181)
T ss_dssp HHHHHHHTTSSS-T---TTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSSTG-----------S--TTEEBTTGGG
T ss_pred HHHHHHHHCCCCCc---ccccEEEEcCCcccceeeeeeecccccceEEEEeccccc-----------c-ccceeeeeccc
Confidence 4455666555 322 236899999999999999999985 4899999998751 1 13567777776
Q ss_pred CCCC--------C--CCCCccEEEeccccCCCCC----H-------HHHHHHHHHhcCCCcEEEEEecc
Q 016921 218 LQQP--------F--PDGQFDLVWSMESGEHMPD----K-------SKFVSELARVTAPAGTIIIVTWC 265 (380)
Q Consensus 218 ~~~~--------~--~~~~fD~V~~~~~l~~~~~----~-------~~~l~~~~r~LkpgG~l~~~~~~ 265 (380)
.+.. + ..+.||+|++..+...-.+ . ...+.-+...|+|||.+++-.+.
T Consensus 73 ~~~~~~~~i~~~~~~~~~~~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~ 141 (181)
T PF01728_consen 73 TNPENIKDIRKLLPESGEKFDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFK 141 (181)
T ss_dssp EEEEHSHHGGGSHGTTTCSESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESS
T ss_pred chhhHHHhhhhhccccccCcceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEecc
Confidence 5421 1 1268999999774433322 1 23555667889999999987653
No 227
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=98.18 E-value=7.8e-06 Score=77.83 Aligned_cols=79 Identities=30% Similarity=0.452 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEE
Q 016921 134 HRAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQ 213 (380)
Q Consensus 134 ~~~~~~~~~~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~ 213 (380)
.......+++.+++.+.... + +|||+-||.|.+++.+|+. ..+|+|+|+++.+++.|++++..+++ .|++|+
T Consensus 178 N~~~~~~l~~~~~~~l~~~~-----~-~vlDlycG~G~fsl~la~~-~~~V~gvE~~~~av~~A~~Na~~N~i-~n~~f~ 249 (352)
T PF05958_consen 178 NPEQNEKLYEQALEWLDLSK-----G-DVLDLYCGVGTFSLPLAKK-AKKVIGVEIVEEAVEDARENAKLNGI-DNVEFI 249 (352)
T ss_dssp BHHHHHHHHHHHHHHCTT-T-----T-EEEEES-TTTCCHHHHHCC-SSEEEEEES-HHHHHHHHHHHHHTT---SEEEE
T ss_pred cHHHHHHHHHHHHHHhhcCC-----C-cEEEEeecCCHHHHHHHhh-CCeEEEeeCCHHHHHHHHHHHHHcCC-CcceEE
Confidence 45666778888888887543 4 8999999999999999987 67999999999999999999999888 589999
Q ss_pred EcCCCCC
Q 016921 214 VGDALQQ 220 (380)
Q Consensus 214 ~~d~~~~ 220 (380)
.++++++
T Consensus 250 ~~~~~~~ 256 (352)
T PF05958_consen 250 RGDAEDF 256 (352)
T ss_dssp E--SHHC
T ss_pred Eeeccch
Confidence 9887654
No 228
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=98.16 E-value=3.5e-05 Score=63.47 Aligned_cols=98 Identities=26% Similarity=0.358 Sum_probs=70.7
Q ss_pred CCCEEEEECCCcChHHHHHHH-----HcCCEEEEEeCCHHHHHHHHHHHHHcC--CCCCeEEEEcCCCCCCCCCCCccEE
Q 016921 158 RPKNVVDVGCGIGGSSRYLAK-----KFGAKCQGITLSPVQAQRANALAAARG--LADKVSFQVGDALQQPFPDGQFDLV 230 (380)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~-----~~~~~v~giD~s~~~~~~a~~~~~~~~--~~~~v~~~~~d~~~~~~~~~~fD~V 230 (380)
+..+|+|+|||.|.++..++. ..+.+|+|+|.++...+.++++....+ +..++.+..++..+.. .....+++
T Consensus 25 ~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 103 (141)
T PF13679_consen 25 RCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIADES-SSDPPDIL 103 (141)
T ss_pred CCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhhhc-ccCCCeEE
Confidence 478999999999999999998 557899999999999999999988766 4456777777665432 24556777
Q ss_pred EeccccCCCCCH-HHHHHHHHHhcCCCcEEEEE
Q 016921 231 WSMESGEHMPDK-SKFVSELARVTAPAGTIIIV 262 (380)
Q Consensus 231 ~~~~~l~~~~~~-~~~l~~~~r~LkpgG~l~~~ 262 (380)
+..++- .+. ..+++.+.+ ++-..++.
T Consensus 104 vgLHaC---G~Ls~~~l~~~~~---~~~~~l~~ 130 (141)
T PF13679_consen 104 VGLHAC---GDLSDRALRLFIR---PNARFLVL 130 (141)
T ss_pred EEeecc---cchHHHHHHHHHH---cCCCEEEE
Confidence 654443 443 345555555 55554443
No 229
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=98.13 E-value=2.5e-05 Score=66.37 Aligned_cols=106 Identities=18% Similarity=0.122 Sum_probs=82.0
Q ss_pred CCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC--CCC-CCCccEEEecc
Q 016921 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ--PFP-DGQFDLVWSME 234 (380)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~-~~~fD~V~~~~ 234 (380)
.+.++||+=+|+|.++...+.+....++.||.+.......+++++..++..++.++..|+... ... .++||+|+..=
T Consensus 43 ~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~~~~~~FDlVflDP 122 (187)
T COG0742 43 EGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQLGTREPFDLVFLDP 122 (187)
T ss_pred CCCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHHHhcCCCCcccEEEeCC
Confidence 489999999999999999999866799999999999999999999888778899999998843 112 23599999853
Q ss_pred ccC-CCCCHHHHHHH--HHHhcCCCcEEEEEe
Q 016921 235 SGE-HMPDKSKFVSE--LARVTAPAGTIIIVT 263 (380)
Q Consensus 235 ~l~-~~~~~~~~l~~--~~r~LkpgG~l~~~~ 263 (380)
-.+ .+-+....+.. -...|+|+|.+++-.
T Consensus 123 Py~~~l~~~~~~~~~~~~~~~L~~~~~iv~E~ 154 (187)
T COG0742 123 PYAKGLLDKELALLLLEENGWLKPGALIVVEH 154 (187)
T ss_pred CCccchhhHHHHHHHHHhcCCcCCCcEEEEEe
Confidence 332 11222333333 457799999999865
No 230
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=98.12 E-value=1.8e-05 Score=74.26 Aligned_cols=105 Identities=20% Similarity=0.318 Sum_probs=72.5
Q ss_pred CCEEEEECCCcChHHHHHHHH--------cCCEEEEEeCCHHHHHHHHHHHHHcCCCCC-eEEEEcCCCCCCCC--CCCc
Q 016921 159 PKNVVDVGCGIGGSSRYLAKK--------FGAKCQGITLSPVQAQRANALAAARGLADK-VSFQVGDALQQPFP--DGQF 227 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~--------~~~~v~giD~s~~~~~~a~~~~~~~~~~~~-v~~~~~d~~~~~~~--~~~f 227 (380)
+.+|+|-+||+|.+...+.+. ....++|+|+++.+...++.++.-.+.... ..+..+|....+.. ...|
T Consensus 47 ~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i~~~d~l~~~~~~~~~~~ 126 (311)
T PF02384_consen 47 GDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINIIQGDSLENDKFIKNQKF 126 (311)
T ss_dssp TEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEEEES-TTTSHSCTST--E
T ss_pred cceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhcccccccccccccccccccccccccc
Confidence 778999999999999888763 257899999999999999877655554322 46888887655432 4789
Q ss_pred cEEEeccccCCC------------------C--C-HHHHHHHHHHhcCCCcEEEEEe
Q 016921 228 DLVWSMESGEHM------------------P--D-KSKFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 228 D~V~~~~~l~~~------------------~--~-~~~~l~~~~r~LkpgG~l~~~~ 263 (380)
|+|+++--+... + . ...++..+.+.|++||++.+..
T Consensus 127 D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Il 183 (311)
T PF02384_consen 127 DVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIIL 183 (311)
T ss_dssp EEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred ccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEe
Confidence 999985211110 0 0 1358899999999999987765
No 231
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=98.12 E-value=1.3e-05 Score=67.62 Aligned_cols=102 Identities=23% Similarity=0.270 Sum_probs=79.6
Q ss_pred CCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEEecccc
Q 016921 157 KRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESG 236 (380)
Q Consensus 157 ~~~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l 236 (380)
-.+++|||+|+|+|..++..+......|+..|+.|...+..+-+++.+|+ .+.+...|... .+..||+|+...++
T Consensus 78 VrgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~~ai~lNa~angv--~i~~~~~d~~g---~~~~~Dl~LagDlf 152 (218)
T COG3897 78 VRGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLEQAIRLNAAANGV--SILFTHADLIG---SPPAFDLLLAGDLF 152 (218)
T ss_pred cccceeeecccccChHHHHHHHhhhHHHHhcCCChHHHHHhhcchhhccc--eeEEeeccccC---CCcceeEEEeecee
Confidence 35899999999999999998887556899999999988888888888775 58888888765 46789999999988
Q ss_pred CCCCCHHHHHHHHHHhcCCCc-EEEEEec
Q 016921 237 EHMPDKSKFVSELARVTAPAG-TIIIVTW 264 (380)
Q Consensus 237 ~~~~~~~~~l~~~~r~LkpgG-~l~~~~~ 264 (380)
+.-+.-.+++. +.+.|+..| .+++.+.
T Consensus 153 y~~~~a~~l~~-~~~~l~~~g~~vlvgdp 180 (218)
T COG3897 153 YNHTEADRLIP-WKDRLAEAGAAVLVGDP 180 (218)
T ss_pred cCchHHHHHHH-HHHHHHhCCCEEEEeCC
Confidence 77656677777 555555444 5555553
No 232
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=98.06 E-value=0.00035 Score=63.38 Aligned_cols=174 Identities=16% Similarity=0.150 Sum_probs=106.7
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCC-----
Q 016921 134 HRAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLAD----- 208 (380)
Q Consensus 134 ~~~~~~~~~~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~----- 208 (380)
.+.....+++++....+... ......+||--|||.|.++..++.. |..+-|-+.|--|+-...=.+.....+.
T Consensus 127 Rd~~ykpii~~l~~lfp~~~-~~r~ki~iLvPGaGlGRLa~dla~~-G~~~qGNEfSy~Mli~S~FiLN~~~~~nq~~IY 204 (369)
T KOG2798|consen 127 RDQLYKPIIEELNSLFPSRG-KERTKIRILVPGAGLGRLAYDLACL-GFKCQGNEFSYFMLICSSFILNYCKQENQFTIY 204 (369)
T ss_pred hhhhhhhHHHHHHhhCCCcc-ccccCceEEecCCCchhHHHHHHHh-cccccccHHHHHHHHHHHHHHHhhccCCcEEEE
Confidence 34445566777666554322 2234678999999999999999987 7777777877777633222221000000
Q ss_pred ----------------------------------CeEEEEcCCCCC---CCCCCCccEEEeccccCCCCCHHHHHHHHHH
Q 016921 209 ----------------------------------KVSFQVGDALQQ---PFPDGQFDLVWSMESGEHMPDKSKFVSELAR 251 (380)
Q Consensus 209 ----------------------------------~v~~~~~d~~~~---~~~~~~fD~V~~~~~l~~~~~~~~~l~~~~r 251 (380)
..+...+|+.+. +-..+.||+|+.++.+....+.-+.++.+..
T Consensus 205 PfIh~~sn~~~~dDQlrpi~~PD~~p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcfFIDTa~NileYi~tI~~ 284 (369)
T KOG2798|consen 205 PFIHQYSNSLSRDDQLRPISIPDIHPASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCFFIDTAHNILEYIDTIYK 284 (369)
T ss_pred eeeeccccccccccccccccCccccccccCCCCCCccccccceeEEecCcCCCCccceEEEEEEeechHHHHHHHHHHHH
Confidence 111122333321 1112469999998877776788899999999
Q ss_pred hcCCCcEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCcEEEEEecCCCc
Q 016921 252 VTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAEDWSQNV 323 (380)
Q Consensus 252 ~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v~~~~~~~~~ 323 (380)
+|||||+.+-..+-.-.+.+.... .....+. ++.+++..+....||++++.+.+....
T Consensus 285 iLk~GGvWiNlGPLlYHF~d~~g~------------~~~~siE--ls~edl~~v~~~~GF~~~ke~~Idt~Y 342 (369)
T KOG2798|consen 285 ILKPGGVWINLGPLLYHFEDTHGV------------ENEMSIE--LSLEDLKRVASHRGFEVEKERGIDTTY 342 (369)
T ss_pred hccCCcEEEeccceeeeccCCCCC------------ccccccc--ccHHHHHHHHHhcCcEEEEeeeeeccc
Confidence 999999987655322221111110 0011112 578999999999999999877554433
No 233
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=98.05 E-value=2.7e-05 Score=66.67 Aligned_cols=120 Identities=17% Similarity=0.216 Sum_probs=88.1
Q ss_pred HHHHHHHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEc
Q 016921 136 AAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVG 215 (380)
Q Consensus 136 ~~~~~~~~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~ 215 (380)
.|...+...+.+.+. . ++.+||+||-|-|.....+.++-...=..|+..|..++..+...-. -..+|.+..+
T Consensus 85 ~WEtpiMha~A~ai~-t-----kggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~~gw~--ek~nViil~g 156 (271)
T KOG1709|consen 85 RWETPIMHALAEAIS-T-----KGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRDWGWR--EKENVIILEG 156 (271)
T ss_pred hhhhHHHHHHHHHHh-h-----CCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHhcccc--cccceEEEec
Confidence 344445555544443 2 3899999999999999888776545566789999988776653311 1256777777
Q ss_pred CCCCC--CCCCCCccEEEeccccCCCCCHHHHHHHHHHhcCCCcEEEEEe
Q 016921 216 DALQQ--PFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 216 d~~~~--~~~~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~ 263 (380)
-.++. .++++.||-|+-...-++..|.-.+.+.+.++|||+|++-...
T Consensus 157 ~WeDvl~~L~d~~FDGI~yDTy~e~yEdl~~~hqh~~rLLkP~gv~SyfN 206 (271)
T KOG1709|consen 157 RWEDVLNTLPDKHFDGIYYDTYSELYEDLRHFHQHVVRLLKPEGVFSYFN 206 (271)
T ss_pred chHhhhccccccCcceeEeechhhHHHHHHHHHHHHhhhcCCCceEEEec
Confidence 66653 3678999999976665777888889999999999999887654
No 234
>KOG2730 consensus Methylase [General function prediction only]
Probab=98.04 E-value=1.2e-05 Score=69.04 Aligned_cols=74 Identities=28% Similarity=0.475 Sum_probs=62.7
Q ss_pred CCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC----CCCCCCccEEEec
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ----PFPDGQFDLVWSM 233 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~----~~~~~~fD~V~~~ 233 (380)
...|+|.-||.|+.+...+.+ ++.|++||++|.-++.|+.+++-.|++++|.|+++|+.++ .+.-..+|+|+.+
T Consensus 95 ~~~iidaf~g~gGntiqfa~~-~~~VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld~~~~lq~~K~~~~~vf~s 172 (263)
T KOG2730|consen 95 AEVIVDAFCGVGGNTIQFALQ-GPYVIAIDIDPVKIACARHNAEVYGVPDRITFICGDFLDLASKLKADKIKYDCVFLS 172 (263)
T ss_pred cchhhhhhhcCCchHHHHHHh-CCeEEEEeccHHHHHHHhccceeecCCceeEEEechHHHHHHHHhhhhheeeeeecC
Confidence 567999999999999988887 8999999999999999999999999999999999998775 2333345566554
No 235
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=98.02 E-value=4.7e-05 Score=64.19 Aligned_cols=155 Identities=14% Similarity=0.118 Sum_probs=91.2
Q ss_pred HHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcC--CEEEEEeCCHHHH----HHHHH-HHHHcCCCCCeEEEEcCC
Q 016921 145 TLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFG--AKCQGITLSPVQA----QRANA-LAAARGLADKVSFQVGDA 217 (380)
Q Consensus 145 ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~--~~v~giD~s~~~~----~~a~~-~~~~~~~~~~v~~~~~d~ 217 (380)
+|...++++ +.+|+|+-.|.|.|+.-++...+ ..|+++=..+... ...+. .+.......|++.+-.+.
T Consensus 40 ~L~FaGlkp-----g~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~aN~e~~~~~~ 114 (238)
T COG4798 40 VLAFAGLKP-----GATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVYANVEVIGKPL 114 (238)
T ss_pred eeEEeccCC-----CCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhhhhhhhhCCcc
Confidence 345566665 99999999999999999988763 3566554433210 10111 111111223455555454
Q ss_pred CCCCCCCCCccEEEeccccC-------CCCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchHHHHHHHHHhhc
Q 016921 218 LQQPFPDGQFDLVWSMESGE-------HMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDA 290 (380)
Q Consensus 218 ~~~~~~~~~fD~V~~~~~l~-------~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (380)
..+. +.+..|++.....-| |-....++.+.+++.|||||.+++.+........... ...
T Consensus 115 ~A~~-~pq~~d~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~dH~a~pG~~~~d------------t~~- 180 (238)
T COG4798 115 VALG-APQKLDLVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVEDHRADPGSGLSD------------TIT- 180 (238)
T ss_pred cccC-CCCcccccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEEeccccCCCChhh------------hhh-
Confidence 4444 345556555422221 1223578999999999999999998854322111100 000
Q ss_pred cCCCCCCCHHHHHHHHHhCCCcEEEEEecCC
Q 016921 291 YYLPAWCSTADYVKLLQSLSLEDIKAEDWSQ 321 (380)
Q Consensus 291 ~~~~~~~~~~~~~~ll~~aGf~~v~~~~~~~ 321 (380)
....+...+....+.+||...-...+..
T Consensus 181 ---~~ri~~a~V~a~veaaGFkl~aeS~ila 208 (238)
T COG4798 181 ---LHRIDPAVVIAEVEAAGFKLEAESEILA 208 (238)
T ss_pred ---hcccChHHHHHHHHhhcceeeeeehhhc
Confidence 0125678899999999999887655543
No 236
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=98.01 E-value=3.4e-05 Score=70.52 Aligned_cols=104 Identities=22% Similarity=0.252 Sum_probs=75.9
Q ss_pred HHHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCC
Q 016921 140 RMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ 219 (380)
Q Consensus 140 ~~~~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 219 (380)
.+++.+++.+.+.. +..|||||+|+|.++..|++. +.+++++|+++.+.+..+++.. ..++++++.+|+.+
T Consensus 17 ~~~~~Iv~~~~~~~-----~~~VlEiGpG~G~lT~~L~~~-~~~v~~vE~d~~~~~~L~~~~~---~~~~~~vi~~D~l~ 87 (262)
T PF00398_consen 17 NIADKIVDALDLSE-----GDTVLEIGPGPGALTRELLKR-GKRVIAVEIDPDLAKHLKERFA---SNPNVEVINGDFLK 87 (262)
T ss_dssp HHHHHHHHHHTCGT-----TSEEEEESSTTSCCHHHHHHH-SSEEEEEESSHHHHHHHHHHCT---TCSSEEEEES-TTT
T ss_pred HHHHHHHHhcCCCC-----CCEEEEeCCCCccchhhHhcc-cCcceeecCcHhHHHHHHHHhh---hcccceeeecchhc
Confidence 46677777776654 899999999999999999998 6999999999999998888664 23689999999998
Q ss_pred CCCCC---CCccEEEeccccCCCCCHHHHHHHHHHhcCC
Q 016921 220 QPFPD---GQFDLVWSMESGEHMPDKSKFVSELARVTAP 255 (380)
Q Consensus 220 ~~~~~---~~fD~V~~~~~l~~~~~~~~~l~~~~r~Lkp 255 (380)
+..+. +....|+++-- +++ ...++.++...-+.
T Consensus 88 ~~~~~~~~~~~~~vv~NlP-y~i--s~~il~~ll~~~~~ 123 (262)
T PF00398_consen 88 WDLYDLLKNQPLLVVGNLP-YNI--SSPILRKLLELYRF 123 (262)
T ss_dssp SCGGGHCSSSEEEEEEEET-GTG--HHHHHHHHHHHGGG
T ss_pred cccHHhhcCCceEEEEEec-ccc--hHHHHHHHhhcccc
Confidence 86543 34445555422 222 34566666664444
No 237
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=98.01 E-value=3.1e-05 Score=71.74 Aligned_cols=87 Identities=16% Similarity=0.190 Sum_probs=66.6
Q ss_pred CCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEEecccc
Q 016921 157 KRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESG 236 (380)
Q Consensus 157 ~~~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l 236 (380)
.++.++|||||++|.|+..+.++ |..|++||..+-. .. +. -.++|.....|......+.+.+|.|+|..+
T Consensus 210 ~~g~~vlDLGAsPGGWT~~L~~r-G~~V~AVD~g~l~-~~----L~---~~~~V~h~~~d~fr~~p~~~~vDwvVcDmv- 279 (357)
T PRK11760 210 APGMRAVDLGAAPGGWTYQLVRR-GMFVTAVDNGPMA-QS----LM---DTGQVEHLRADGFKFRPPRKNVDWLVCDMV- 279 (357)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHc-CCEEEEEechhcC-Hh----hh---CCCCEEEEeccCcccCCCCCCCCEEEEecc-
Confidence 46899999999999999999997 8899999966521 11 11 125799898887665323678999998644
Q ss_pred CCCCCHHHHHHHHHHhcCCC
Q 016921 237 EHMPDKSKFVSELARVTAPA 256 (380)
Q Consensus 237 ~~~~~~~~~l~~~~r~Lkpg 256 (380)
..|..+.+-+.+.|..|
T Consensus 280 ---e~P~rva~lm~~Wl~~g 296 (357)
T PRK11760 280 ---EKPARVAELMAQWLVNG 296 (357)
T ss_pred ---cCHHHHHHHHHHHHhcC
Confidence 36778888888888776
No 238
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=98.00 E-value=0.00015 Score=69.11 Aligned_cols=107 Identities=22% Similarity=0.330 Sum_probs=83.2
Q ss_pred CCCCEEEEECCCcChHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC--CC-CCCccEE
Q 016921 157 KRPKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP--FP-DGQFDLV 230 (380)
Q Consensus 157 ~~~~~vLDiGcGtG~~~~~l~~~~---~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--~~-~~~fD~V 230 (380)
.++.+|||+.++.|.=+..+++.. +..|+++|.++.-+...+.+++..|+. ++.....|...++ .+ .++||.|
T Consensus 155 ~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~-nv~~~~~d~~~~~~~~~~~~~fD~i 233 (355)
T COG0144 155 KPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVR-NVIVVNKDARRLAELLPGGEKFDRI 233 (355)
T ss_pred CCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCC-ceEEEecccccccccccccCcCcEE
Confidence 459999999999999888888876 356799999999999999999999985 5888888876553 22 2369999
Q ss_pred Ee------ccccCCCCCH----------------HHHHHHHHHhcCCCcEEEEEec
Q 016921 231 WS------MESGEHMPDK----------------SKFVSELARVTAPAGTIIIVTW 264 (380)
Q Consensus 231 ~~------~~~l~~~~~~----------------~~~l~~~~r~LkpgG~l~~~~~ 264 (380)
++ .++++-=++. .++|..+.+.|||||.|+.++-
T Consensus 234 LlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTC 289 (355)
T COG0144 234 LLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTC 289 (355)
T ss_pred EECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEcc
Confidence 96 2333211221 3588899999999999999874
No 239
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=97.95 E-value=1.4e-06 Score=68.03 Aligned_cols=99 Identities=24% Similarity=0.383 Sum_probs=44.9
Q ss_pred EEECCCcChHHHHHHHHc--C--CEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC--CCCCCCccEEEecccc
Q 016921 163 VDVGCGIGGSSRYLAKKF--G--AKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ--PFPDGQFDLVWSMESG 236 (380)
Q Consensus 163 LDiGcGtG~~~~~l~~~~--~--~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~fD~V~~~~~l 236 (380)
||||+..|..+..+++.. . .+++++|+.+. .+.+++.+++.++..+++++.++..+. .++.++||+|+.-. -
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg-~ 78 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDG-D 78 (106)
T ss_dssp --------------------------EEEESS-------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES--
T ss_pred CccccccccccccccccccccccCCEEEEECCCc-ccccchhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECC-C
Confidence 699999999998888765 2 37999999995 333444444456667899999998653 23357899998754 2
Q ss_pred CCCCCHHHHHHHHHHhcCCCcEEEEEe
Q 016921 237 EHMPDKSKFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 237 ~~~~~~~~~l~~~~r~LkpgG~l~~~~ 263 (380)
|..+.....++.+.+.|+|||.+++.+
T Consensus 79 H~~~~~~~dl~~~~~~l~~ggviv~dD 105 (106)
T PF13578_consen 79 HSYEAVLRDLENALPRLAPGGVIVFDD 105 (106)
T ss_dssp --HHHHHHHHHHHGGGEEEEEEEEEE-
T ss_pred CCHHHHHHHHHHHHHHcCCCeEEEEeC
Confidence 222345677888999999999999865
No 240
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=97.94 E-value=0.0011 Score=63.12 Aligned_cols=163 Identities=17% Similarity=0.224 Sum_probs=91.3
Q ss_pred CCEEEEECCCcChHHHHHHHHc----------------CCEEEEEeCCHHHHHHHHHHHHH---------cC---CCCCe
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKF----------------GAKCQGITLSPVQAQRANALAAA---------RG---LADKV 210 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~----------------~~~v~giD~s~~~~~~a~~~~~~---------~~---~~~~v 210 (380)
..+|+|+|||+|.+++.+.... ..+|..-|+-.+-....=+.+.. .. ...+.
T Consensus 64 ~~~iaDlGcs~G~ntl~~vs~iI~~i~~~~~~~~~~~pe~qv~~nDLP~NDFNtlF~~L~~~~~~~~~~~~~~~~~~~~~ 143 (386)
T PLN02668 64 PFTAVDLGCSSGSNTIHIIDVIVKHMSKRYESAGLDPPEFSAFFSDLPSNDFNTLFQLLPPLANYGGSMEECLAASGHRS 143 (386)
T ss_pred ceeEEEecCCCCccHHHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCCHHHHHhhchhhhhhhcchhhhccccCCCc
Confidence 6789999999998876654321 13566666543221111111100 00 00011
Q ss_pred EEEE---cCCCCCCCCCCCccEEEeccccCCCCC--------------------------------------HHHHHHHH
Q 016921 211 SFQV---GDALQQPFPDGQFDLVWSMESGEHMPD--------------------------------------KSKFVSEL 249 (380)
Q Consensus 211 ~~~~---~d~~~~~~~~~~fD~V~~~~~l~~~~~--------------------------------------~~~~l~~~ 249 (380)
-|+. +.+-.--||.++.+++++.+++||+.. ...+|+.=
T Consensus 144 ~f~~gvpGSFY~RLfP~~Slh~~~Ss~slHWLS~vP~~l~d~~s~~~Nkg~iyi~~~s~~v~~aY~~Qf~~D~~~FL~~R 223 (386)
T PLN02668 144 YFAAGVPGSFYRRLFPARSIDVFHSAFSLHWLSQVPESVTDKRSAAYNKGRVFIHGASESTANAYKRQFQADLAGFLRAR 223 (386)
T ss_pred eEEEecCccccccccCCCceEEEEeeccceecccCchhhccCCcccccCCceEecCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 1222 222222478999999999999999842 11234444
Q ss_pred HHhcCCCcEEEEEeccCCCCCCCccc--cchH---HHHHHHH----------HhhccCCCC-CCCHHHHHHHHHhCC-Cc
Q 016921 250 ARVTAPAGTIIIVTWCHRDLAPSEES--LQPW---EQELLKK----------ICDAYYLPA-WCSTADYVKLLQSLS-LE 312 (380)
Q Consensus 250 ~r~LkpgG~l~~~~~~~~~~~~~~~~--~~~~---~~~~~~~----------~~~~~~~~~-~~~~~~~~~ll~~aG-f~ 312 (380)
++-|.|||++++...+.....+.... ...| ....+.. -.+.+.+|. .++.+|+++.+++.| |+
T Consensus 224 a~ELvpGG~mvl~~~Gr~~~~~~~~~~~~~~~~~~l~~al~dlv~eGlI~eek~dsFniP~Y~ps~eEv~~~Ie~~gsF~ 303 (386)
T PLN02668 224 AQEMKRGGAMFLVCLGRTSVDPTDQGGAGLLFGTHFQDAWDDLVQEGLVTSEKRDSFNIPVYAPSLQDFKEVVEANGSFA 303 (386)
T ss_pred HHHhccCcEEEEEEecCCCCCcccCCchhHHHHHHHHHHHHHHHHcCCCCHHHHhcccCcccCCCHHHHHHHHhhcCCEE
Confidence 56789999999998776543332221 1111 1122222 122334442 468999999999888 77
Q ss_pred EEEEEecCC
Q 016921 313 DIKAEDWSQ 321 (380)
Q Consensus 313 ~v~~~~~~~ 321 (380)
+..++.+..
T Consensus 304 I~~le~~~~ 312 (386)
T PLN02668 304 IDKLEVFKG 312 (386)
T ss_pred eeeeEEeec
Confidence 776665543
No 241
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=97.94 E-value=7.9e-05 Score=70.11 Aligned_cols=118 Identities=24% Similarity=0.266 Sum_probs=86.3
Q ss_pred HHHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcC---------------------------------C----
Q 016921 140 RMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFG---------------------------------A---- 182 (380)
Q Consensus 140 ~~~~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~---------------------------------~---- 182 (380)
.+...++...+-.+ +..++|-=||+|.+++..|.... +
T Consensus 178 tLAaAil~lagw~~-----~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~ 252 (381)
T COG0116 178 TLAAAILLLAGWKP-----DEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGK 252 (381)
T ss_pred HHHHHHHHHcCCCC-----CCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcC
Confidence 35556666666554 67899999999999998886531 0
Q ss_pred ---EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEEecc--ccCCCCC---HH----HHHHHHH
Q 016921 183 ---KCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSME--SGEHMPD---KS----KFVSELA 250 (380)
Q Consensus 183 ---~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~--~l~~~~~---~~----~~l~~~~ 250 (380)
.++|+|+++.+++.|+.++...|+.+-|+|.++|+..+.-+-+.+|+|+++- ... +.+ .. .+.+.+.
T Consensus 253 ~~~~~~G~Did~r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~~~~~gvvI~NPPYGeR-lg~~~~v~~LY~~fg~~lk 331 (381)
T COG0116 253 ELPIIYGSDIDPRHIEGAKANARAAGVGDLIEFKQADATDLKEPLEEYGVVISNPPYGER-LGSEALVAKLYREFGRTLK 331 (381)
T ss_pred ccceEEEecCCHHHHHHHHHHHHhcCCCceEEEEEcchhhCCCCCCcCCEEEeCCCcchh-cCChhhHHHHHHHHHHHHH
Confidence 3779999999999999999999999999999999999864437899999862 221 222 22 2334455
Q ss_pred HhcCCCcEEEEEe
Q 016921 251 RVTAPAGTIIIVT 263 (380)
Q Consensus 251 r~LkpgG~l~~~~ 263 (380)
+.++--+..+++.
T Consensus 332 ~~~~~ws~~v~tt 344 (381)
T COG0116 332 RLLAGWSRYVFTT 344 (381)
T ss_pred HHhcCCceEEEEc
Confidence 6666666666654
No 242
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=97.94 E-value=4.1e-05 Score=64.11 Aligned_cols=101 Identities=21% Similarity=0.151 Sum_probs=79.0
Q ss_pred CCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEEeccc--c
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMES--G 236 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~--l 236 (380)
...+.|+|+|+|.++...++. ..+|++++.+|...+.|.+++.-.|. .+++++.+|+.+..| +..|+|+|-.. .
T Consensus 33 ~d~~~DLGaGsGiLs~~Aa~~-A~rViAiE~dPk~a~~a~eN~~v~g~-~n~evv~gDA~~y~f--e~ADvvicEmlDTa 108 (252)
T COG4076 33 EDTFADLGAGSGILSVVAAHA-AERVIAIEKDPKRARLAEENLHVPGD-VNWEVVVGDARDYDF--ENADVVICEMLDTA 108 (252)
T ss_pred hhceeeccCCcchHHHHHHhh-hceEEEEecCcHHHHHhhhcCCCCCC-cceEEEecccccccc--cccceeHHHHhhHH
Confidence 467999999999999888876 78999999999999999988755555 689999999999887 56798887321 1
Q ss_pred CCCCCHHHHHHHHHHhcCCCcEEEEEe
Q 016921 237 EHMPDKSKFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 237 ~~~~~~~~~l~~~~r~LkpgG~l~~~~ 263 (380)
--......+++.+...||-.+.++=..
T Consensus 109 Li~E~qVpV~n~vleFLr~d~tiiPq~ 135 (252)
T COG4076 109 LIEEKQVPVINAVLEFLRYDPTIIPQE 135 (252)
T ss_pred hhcccccHHHHHHHHHhhcCCccccHH
Confidence 111233568888888999998877544
No 243
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=97.84 E-value=0.00022 Score=65.88 Aligned_cols=105 Identities=23% Similarity=0.223 Sum_probs=77.7
Q ss_pred CCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHH--HHc-C---CCCCeEEEEcCCCCC-CCCCCCccEE
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALA--AAR-G---LADKVSFQVGDALQQ-PFPDGQFDLV 230 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~-~~~v~giD~s~~~~~~a~~~~--~~~-~---~~~~v~~~~~d~~~~-~~~~~~fD~V 230 (380)
..+||-+|.|.|.-+..+.+.- -.+++-+|++|.|++.++... .+. + -.++++++..|+.++ .-..+.||.|
T Consensus 290 a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~fD~v 369 (508)
T COG4262 290 ARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMFDVV 369 (508)
T ss_pred cceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhcccccEE
Confidence 6789999999999999998865 479999999999999998432 221 1 136899999998875 2234689999
Q ss_pred EeccccCCCCC-----HHHHHHHHHHhcCCCcEEEEEe
Q 016921 231 WSMESGEHMPD-----KSKFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 231 ~~~~~l~~~~~-----~~~~l~~~~r~LkpgG~l~~~~ 263 (380)
+...-=..-+. ..++..-+.+.|+++|.+++.-
T Consensus 370 IVDl~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQa 407 (508)
T COG4262 370 IVDLPDPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQA 407 (508)
T ss_pred EEeCCCCCCcchhhhhhHHHHHHHHHhcCcCceEEEec
Confidence 87431111111 1468888999999999999864
No 244
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=97.83 E-value=0.00024 Score=71.64 Aligned_cols=74 Identities=20% Similarity=0.138 Sum_probs=54.0
Q ss_pred CCEEEEECCCcChHHHHHHHHcC---------CEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-----CCC
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKFG---------AKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-----FPD 224 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~---------~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~~~ 224 (380)
..+|||.|||+|.+...+++... ..++|+|+++..+..++.++...+. ..+.+...|..... -..
T Consensus 32 ~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~-~~~~i~~~d~l~~~~~~~~~~~ 110 (524)
T TIGR02987 32 KTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFAL-LEINVINFNSLSYVLLNIESYL 110 (524)
T ss_pred ceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCC-CCceeeeccccccccccccccc
Confidence 57999999999999998887651 4789999999999999988866541 13455555533211 112
Q ss_pred CCccEEEec
Q 016921 225 GQFDLVWSM 233 (380)
Q Consensus 225 ~~fD~V~~~ 233 (380)
+.||+|+++
T Consensus 111 ~~fD~IIgN 119 (524)
T TIGR02987 111 DLFDIVITN 119 (524)
T ss_pred CcccEEEeC
Confidence 579999985
No 245
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=97.76 E-value=0.00064 Score=59.21 Aligned_cols=107 Identities=16% Similarity=0.183 Sum_probs=73.6
Q ss_pred CCCCCCCCCEEEEECCCcChHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC---CCCCC
Q 016921 152 SEDPTKRPKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP---FPDGQ 226 (380)
Q Consensus 152 ~~~~~~~~~~vLDiGcGtG~~~~~l~~~~--~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~---~~~~~ 226 (380)
...+..++.+||-+|..+|.....+++-. ...|++++.|+......-..+++. +|+--+..|+.... .--+.
T Consensus 67 ~~~~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R---~NIiPIl~DAr~P~~Y~~lv~~ 143 (229)
T PF01269_consen 67 ENIPIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKR---PNIIPILEDARHPEKYRMLVEM 143 (229)
T ss_dssp S--S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHS---TTEEEEES-TTSGGGGTTTS--
T ss_pred cccCCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccC---CceeeeeccCCChHHhhccccc
Confidence 33444569999999999999999999876 468999999997655544444443 58988999998742 11258
Q ss_pred ccEEEeccccCCCCCHHHHHHHHHHhcCCCcEEEEEe
Q 016921 227 FDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 227 fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~ 263 (380)
+|+|++.-+ +-....-++.++...||+||.+++.-
T Consensus 144 VDvI~~DVa--Qp~Qa~I~~~Na~~fLk~gG~~~i~i 178 (229)
T PF01269_consen 144 VDVIFQDVA--QPDQARIAALNARHFLKPGGHLIISI 178 (229)
T ss_dssp EEEEEEE-S--STTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccEEEecCC--ChHHHHHHHHHHHhhccCCcEEEEEE
Confidence 999987533 11233456778889999999999875
No 246
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=97.74 E-value=0.00042 Score=63.65 Aligned_cols=102 Identities=15% Similarity=0.172 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCCEEEEECCCcChH-HHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHc-CCCCCeE
Q 016921 134 HRAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGS-SRYLAKKFGAKCQGITLSPVQAQRANALAAAR-GLADKVS 211 (380)
Q Consensus 134 ~~~~~~~~~~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~-~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~-~~~~~v~ 211 (380)
.|.-....+..++...... .+...++||||||.... .+..++.++.+++|.|+++..++.|++.+..+ ++.++|+
T Consensus 81 ~R~nYi~~i~DlL~~~~~~---~~~~v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~ 157 (299)
T PF05971_consen 81 NRLNYIHWIADLLASSNPG---IPEKVRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPKSLESARENVERNPNLESRIE 157 (299)
T ss_dssp HHHHHHHHHHHHHT--TCG---CS---EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHHT-T-TTTEE
T ss_pred hhHHHHHHHHHHhhccccc---cccceEeecCCccHHHHHHHHhhhhcCCeEEEecCCHHHHHHHHHHHHhccccccceE
Confidence 4455555666666543221 12367899999997644 44445555999999999999999999999998 8889999
Q ss_pred EEEcCCCC-----CCCCCCCccEEEeccccCC
Q 016921 212 FQVGDALQ-----QPFPDGQFDLVWSMESGEH 238 (380)
Q Consensus 212 ~~~~d~~~-----~~~~~~~fD~V~~~~~l~~ 238 (380)
++...-.. +..+++.||+..|+=-++.
T Consensus 158 l~~~~~~~~i~~~i~~~~e~~dftmCNPPFy~ 189 (299)
T PF05971_consen 158 LRKQKNPDNIFDGIIQPNERFDFTMCNPPFYS 189 (299)
T ss_dssp EEE--ST-SSTTTSTT--S-EEEEEE-----S
T ss_pred EEEcCCccccchhhhcccceeeEEecCCcccc
Confidence 98764322 1123468999999765554
No 247
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=97.72 E-value=0.0015 Score=56.73 Aligned_cols=127 Identities=15% Similarity=0.124 Sum_probs=95.0
Q ss_pred CCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEEeccccC
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGE 237 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~ 237 (380)
+.++.||||-.+.+..++.+.. ...++..|+++.-++.|.+.+++.++.++++...+|....--++..+|.|+..++-.
T Consensus 17 ~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~~l~~~d~~d~ivIAGMGG 96 (226)
T COG2384 17 GARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLAVLELEDEIDVIVIAGMGG 96 (226)
T ss_pred CCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCccccCccCCcCEEEEeCCcH
Confidence 5669999999999999999876 568999999999999999999999999999999999854322345899998876533
Q ss_pred CCCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCcEEEEE
Q 016921 238 HMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAE 317 (380)
Q Consensus 238 ~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v~~~ 317 (380)
. -...++.+-.+.|+.=-++++.- -.....++++|.+.+|+++...
T Consensus 97 ~--lI~~ILee~~~~l~~~~rlILQP--------------------------------n~~~~~LR~~L~~~~~~I~~E~ 142 (226)
T COG2384 97 T--LIREILEEGKEKLKGVERLILQP--------------------------------NIHTYELREWLSANSYEIKAET 142 (226)
T ss_pred H--HHHHHHHHhhhhhcCcceEEECC--------------------------------CCCHHHHHHHHHhCCceeeeee
Confidence 1 23455666666665334555531 1235788889999999887654
Q ss_pred ec
Q 016921 318 DW 319 (380)
Q Consensus 318 ~~ 319 (380)
-+
T Consensus 143 il 144 (226)
T COG2384 143 IL 144 (226)
T ss_pred ee
Confidence 33
No 248
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=97.72 E-value=0.00018 Score=69.30 Aligned_cols=102 Identities=27% Similarity=0.312 Sum_probs=84.5
Q ss_pred EEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEEeccccCCCC
Q 016921 161 NVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEHMP 240 (380)
Q Consensus 161 ~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~ 240 (380)
++|-+|||.-.+...+-+.....|+-+|+|+..++....+.... ..-..+...|+..+.|++++||+|+..+.+.++-
T Consensus 51 ~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S~V~V~~m~~~~~~~--~~~~~~~~~d~~~l~fedESFdiVIdkGtlDal~ 128 (482)
T KOG2352|consen 51 KILQLGCGNSELSEHLYKNGFEDITNIDSSSVVVAAMQVRNAKE--RPEMQMVEMDMDQLVFEDESFDIVIDKGTLDALF 128 (482)
T ss_pred eeEeecCCCCHHHHHHHhcCCCCceeccccHHHHHHHHhccccC--CcceEEEEecchhccCCCcceeEEEecCcccccc
Confidence 89999999998888887764568999999999988877665422 2468899999999999999999999999998872
Q ss_pred -C---------HHHHHHHHHHhcCCCcEEEEEec
Q 016921 241 -D---------KSKFVSELARVTAPAGTIIIVTW 264 (380)
Q Consensus 241 -~---------~~~~l~~~~r~LkpgG~l~~~~~ 264 (380)
+ ....+.++.|+|++||+.+....
T Consensus 129 ~de~a~~~~~~v~~~~~eVsrvl~~~gk~~svtl 162 (482)
T KOG2352|consen 129 EDEDALLNTAHVSNMLDEVSRVLAPGGKYISVTL 162 (482)
T ss_pred CCchhhhhhHHhhHHHhhHHHHhccCCEEEEEEe
Confidence 2 13467899999999999888776
No 249
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=97.68 E-value=0.0003 Score=64.98 Aligned_cols=89 Identities=13% Similarity=0.130 Sum_probs=72.4
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCC
Q 016921 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ 219 (380)
Q Consensus 141 ~~~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 219 (380)
+++++++.+.+.+ +..++|.-+|.|..+..+++.. ..+|+|+|.++.+++.+++++... ..++.++++++.+
T Consensus 8 ll~Evl~~L~~~~-----ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~--~~R~~~i~~nF~~ 80 (305)
T TIGR00006 8 LLDEVVEGLNIKP-----DGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDF--EGRVVLIHDNFAN 80 (305)
T ss_pred hHHHHHHhcCcCC-----CCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhc--CCcEEEEeCCHHH
Confidence 5667777776544 8899999999999999999886 589999999999999999988654 3689999999887
Q ss_pred CC-----CCCCCccEEEecccc
Q 016921 220 QP-----FPDGQFDLVWSMESG 236 (380)
Q Consensus 220 ~~-----~~~~~fD~V~~~~~l 236 (380)
+. ...+++|.|+...++
T Consensus 81 l~~~l~~~~~~~vDgIl~DLGv 102 (305)
T TIGR00006 81 FFEHLDELLVTKIDGILVDLGV 102 (305)
T ss_pred HHHHHHhcCCCcccEEEEeccC
Confidence 52 234679999986654
No 250
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=97.66 E-value=0.0047 Score=58.38 Aligned_cols=160 Identities=16% Similarity=0.179 Sum_probs=83.4
Q ss_pred CCCEEEEECCCcChHHHHHHHHc-----------C------CEEEEEeCCHHHHH-H------HHHHHHHcCCCCCe--E
Q 016921 158 RPKNVVDVGCGIGGSSRYLAKKF-----------G------AKCQGITLSPVQAQ-R------ANALAAARGLADKV--S 211 (380)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~-----------~------~~v~giD~s~~~~~-~------a~~~~~~~~~~~~v--~ 211 (380)
...+|+|+||.+|..++.+.... + .+|+--|+-.+-.. . -.+.... . .++ .
T Consensus 16 ~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~-~--~~~f~~ 92 (334)
T PF03492_consen 16 KPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKK-F--RNYFVS 92 (334)
T ss_dssp TEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHH-T--TSEEEE
T ss_pred CceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCC-C--ceEEEE
Confidence 36799999999999998776532 1 36888886332111 1 1111111 1 122 2
Q ss_pred EEEcCCCCCCCCCCCccEEEeccccCCCCC-H--------------------------------------HHHHHHHHHh
Q 016921 212 FQVGDALQQPFPDGQFDLVWSMESGEHMPD-K--------------------------------------SKFVSELARV 252 (380)
Q Consensus 212 ~~~~d~~~~~~~~~~fD~V~~~~~l~~~~~-~--------------------------------------~~~l~~~~r~ 252 (380)
-+-+.+.+--+|+++.|++++..++||+.. | ..+|+.=++-
T Consensus 93 gvpgSFy~rLfP~~Svh~~~Ss~alHWLS~vP~~l~~~~~~~~Nkg~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~E 172 (334)
T PF03492_consen 93 GVPGSFYGRLFPSNSVHFGHSSYALHWLSQVPEELVDKSSPAWNKGNIYISRTSPPEVAKAYAKQFQKDFSSFLKARAEE 172 (334)
T ss_dssp EEES-TTS--S-TT-EEEEEEES-TTB-SSS-CCCCTTTSTTTSTTTSSSSTTS-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ecCchhhhccCCCCceEEEEEechhhhcccCCcccccccccccccCcEEEecCCCHHHHHHHHHHHHHHHHHHHHHhhhe
Confidence 234455444478999999999999998731 0 0134444556
Q ss_pred cCCCcEEEEEeccCCCCCCCcc---ccchHHHHHHHHHhhcc----------CCCC-CCCHHHHHHHHHhCC-CcEEEEE
Q 016921 253 TAPAGTIIIVTWCHRDLAPSEE---SLQPWEQELLKKICDAY----------YLPA-WCSTADYVKLLQSLS-LEDIKAE 317 (380)
Q Consensus 253 LkpgG~l~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~----------~~~~-~~~~~~~~~ll~~aG-f~~v~~~ 317 (380)
|+|||++++...+.+...+... .+.......+..+.... .+|. +++.+++++.+++.| |++..++
T Consensus 173 Lv~GG~mvl~~~gr~~~~~~~~~~~~~~~~l~~~l~dMv~eGlI~~ek~dsfniP~Y~ps~eEv~~~I~~~gsF~I~~le 252 (334)
T PF03492_consen 173 LVPGGRMVLTFLGRDEEDPSSTGSCMLWDLLADALRDMVAEGLISEEKVDSFNIPIYFPSPEEVRAIIEEEGSFEIEKLE 252 (334)
T ss_dssp EEEEEEEEEEEEE-STSSTTSTTCCCHHHHHHHHHHHHHHTTSS-HCCCCTG--SBB---HHHHHHHHHHHTSEEEEEEE
T ss_pred eccCcEEEEEEeeccccccccCCcchHHHHHHHHHHHHHHcCCcCHHHhhceeCCccCCCHHHHHHHHhcCCCEEEEEEE
Confidence 8899999999887766332222 11222223333322222 2232 468999999998776 7776665
Q ss_pred ecC
Q 016921 318 DWS 320 (380)
Q Consensus 318 ~~~ 320 (380)
.+.
T Consensus 253 ~~~ 255 (334)
T PF03492_consen 253 LFE 255 (334)
T ss_dssp EEE
T ss_pred EEe
Confidence 444
No 251
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.65 E-value=0.0039 Score=53.23 Aligned_cols=106 Identities=15% Similarity=0.237 Sum_probs=78.2
Q ss_pred CCCCCCCCCEEEEECCCcChHHHHHHHHcC-CEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC---CCCCCc
Q 016921 152 SEDPTKRPKNVVDVGCGIGGSSRYLAKKFG-AKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP---FPDGQF 227 (380)
Q Consensus 152 ~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~-~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~---~~~~~f 227 (380)
...+..++.+||-+|.-+|....++++-.+ ..+++++.|+......-..+.+. +|+--+..|+.... .--+..
T Consensus 70 ~~~pi~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R---~Ni~PIL~DA~~P~~Y~~~Ve~V 146 (231)
T COG1889 70 KNFPIKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKR---PNIIPILEDARKPEKYRHLVEKV 146 (231)
T ss_pred ccCCcCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHhC---CCceeeecccCCcHHhhhhcccc
Confidence 334456699999999999999999998764 67999999998876665555543 57888999997742 112568
Q ss_pred cEEEeccccCCCCCH-HHHHHHHHHhcCCCcEEEEEe
Q 016921 228 DLVWSMESGEHMPDK-SKFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 228 D~V~~~~~l~~~~~~-~~~l~~~~r~LkpgG~l~~~~ 263 (380)
|+|+..-+- ++. .-+..++...||+||.++++-
T Consensus 147 Dviy~DVAQ---p~Qa~I~~~Na~~FLk~~G~~~i~i 180 (231)
T COG1889 147 DVIYQDVAQ---PNQAEILADNAEFFLKKGGYVVIAI 180 (231)
T ss_pred cEEEEecCC---chHHHHHHHHHHHhcccCCeEEEEE
Confidence 988863211 233 346678999999999887764
No 252
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=97.65 E-value=0.00019 Score=58.93 Aligned_cols=58 Identities=22% Similarity=0.246 Sum_probs=49.7
Q ss_pred EEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCC
Q 016921 161 NVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ 219 (380)
Q Consensus 161 ~vLDiGcGtG~~~~~l~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 219 (380)
.|||||||.|.++..+++.. +.+++++|+++.+.+.++++++..+++ ++.++...+.+
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~~-~v~~~~~al~~ 59 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNLP-NVVLLNAAVGD 59 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCCC-cEEEEEeeeeC
Confidence 38999999999999998876 458999999999999999999887764 58888877654
No 253
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.63 E-value=0.00015 Score=63.55 Aligned_cols=150 Identities=13% Similarity=0.098 Sum_probs=97.4
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCe-EEEEcCCCC
Q 016921 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKV-SFQVGDALQ 219 (380)
Q Consensus 141 ~~~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v-~~~~~d~~~ 219 (380)
.+...++...+.. ++..+||||+.||.++..+.++...+|+++|....++..--+ ..+++ .+...|+..
T Consensus 66 KL~~ale~F~l~~----k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql~~kLR------~d~rV~~~E~tN~r~ 135 (245)
T COG1189 66 KLEKALEEFELDV----KGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQLHWKLR------NDPRVIVLERTNVRY 135 (245)
T ss_pred HHHHHHHhcCcCC----CCCEEEEecCCCccHHHHHHHcCCcEEEEEEccCCccCHhHh------cCCcEEEEecCChhh
Confidence 4455566666553 589999999999999999999856789999999988765322 11344 445556665
Q ss_pred CC---CCCCCccEEEeccccCCCCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCC-
Q 016921 220 QP---FPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPA- 295 (380)
Q Consensus 220 ~~---~~~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 295 (380)
+. +. +..|++++.-++. ....++..+..+++|+|.++... .+.+.... ..+ ....-+..
T Consensus 136 l~~~~~~-~~~d~~v~DvSFI---SL~~iLp~l~~l~~~~~~~v~Lv--KPQFEagr--------~~v---~kkGvv~d~ 198 (245)
T COG1189 136 LTPEDFT-EKPDLIVIDVSFI---SLKLILPALLLLLKDGGDLVLLV--KPQFEAGR--------EQV---GKKGVVRDP 198 (245)
T ss_pred CCHHHcc-cCCCeEEEEeehh---hHHHHHHHHHHhcCCCceEEEEe--cchhhhhh--------hhc---CcCceecCc
Confidence 52 22 4788999876654 45678999999999999888754 11111000 011 11111111
Q ss_pred ---CCCHHHHHHHHHhCCCcEEEEE
Q 016921 296 ---WCSTADYVKLLQSLSLEDIKAE 317 (380)
Q Consensus 296 ---~~~~~~~~~ll~~aGf~~v~~~ 317 (380)
-.-...+.+++++.||....+.
T Consensus 199 ~~~~~v~~~i~~~~~~~g~~~~gl~ 223 (245)
T COG1189 199 KLHAEVLSKIENFAKELGFQVKGLI 223 (245)
T ss_pred chHHHHHHHHHHHHhhcCcEEeeeE
Confidence 1234677888888999987664
No 254
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=97.61 E-value=0.00058 Score=63.03 Aligned_cols=106 Identities=22% Similarity=0.304 Sum_probs=83.1
Q ss_pred CCCEEEEECCCcChHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC--CCCCCccEEEe-
Q 016921 158 RPKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP--FPDGQFDLVWS- 232 (380)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~--~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--~~~~~fD~V~~- 232 (380)
++.+|||+.++.|.=+..+++.. ...+++.|+++.-+...+.++...|. .++.....|..... .....||.|+.
T Consensus 85 ~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~-~~v~~~~~D~~~~~~~~~~~~fd~VlvD 163 (283)
T PF01189_consen 85 PGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGV-FNVIVINADARKLDPKKPESKFDRVLVD 163 (283)
T ss_dssp TTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT--SSEEEEESHHHHHHHHHHTTTEEEEEEE
T ss_pred ccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCC-ceEEEEeeccccccccccccccchhhcC
Confidence 48899999999999999999877 47999999999999999999999887 46777778877651 22346999996
Q ss_pred -----ccccCCCCCH----------------HHHHHHHHHhc----CCCcEEEEEec
Q 016921 233 -----MESGEHMPDK----------------SKFVSELARVT----APAGTIIIVTW 264 (380)
Q Consensus 233 -----~~~l~~~~~~----------------~~~l~~~~r~L----kpgG~l~~~~~ 264 (380)
.+++..-++. .++|+.+.+.+ ||||+++.++-
T Consensus 164 aPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTC 220 (283)
T PF01189_consen 164 APCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTC 220 (283)
T ss_dssp CSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEES
T ss_pred CCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEec
Confidence 2233332321 35889999999 99999999873
No 255
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=97.57 E-value=0.00012 Score=70.65 Aligned_cols=67 Identities=30% Similarity=0.496 Sum_probs=59.0
Q ss_pred HHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC
Q 016921 147 RFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ 220 (380)
Q Consensus 147 ~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~ 220 (380)
+++++.. +..+||+-||||.+++.+++. ...|+||++++..++.|+.++..+|+ .|.+|+++-++++
T Consensus 377 e~~~l~~-----~k~llDv~CGTG~iglala~~-~~~ViGvEi~~~aV~dA~~nA~~Ngi-sNa~Fi~gqaE~~ 443 (534)
T KOG2187|consen 377 EWAGLPA-----DKTLLDVCCGTGTIGLALARG-VKRVIGVEISPDAVEDAEKNAQINGI-SNATFIVGQAEDL 443 (534)
T ss_pred HHhCCCC-----CcEEEEEeecCCceehhhhcc-ccceeeeecChhhcchhhhcchhcCc-cceeeeecchhhc
Confidence 4555554 789999999999999999987 67999999999999999999999988 5899999977764
No 256
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=97.51 E-value=0.00041 Score=56.22 Aligned_cols=80 Identities=20% Similarity=0.305 Sum_probs=59.2
Q ss_pred EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC--CCCCCccEEEeccccCCCC--C------H---HHHHHHH
Q 016921 183 KCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP--FPDGQFDLVWSMESGEHMP--D------K---SKFVSEL 249 (380)
Q Consensus 183 ~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--~~~~~fD~V~~~~~l~~~~--~------~---~~~l~~~ 249 (380)
+|+|+|+-+..++..++++.+.++..+++++..+-+++. .+.+++|+++.+. .++| | + ..+++.+
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~~~~v~~~iFNL--GYLPggDk~i~T~~~TTl~Al~~a 78 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEYIPEGPVDAAIFNL--GYLPGGDKSITTKPETTLKALEAA 78 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT--S--EEEEEEEE--SB-CTS-TTSB--HHHHHHHHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhCccCCcCEEEEEC--CcCCCCCCCCCcCcHHHHHHHHHH
Confidence 589999999999999999999998889999998877764 2335899987653 3443 2 1 4689999
Q ss_pred HHhcCCCcEEEEEec
Q 016921 250 ARVTAPAGTIIIVTW 264 (380)
Q Consensus 250 ~r~LkpgG~l~~~~~ 264 (380)
.+.|+|||.+.++.+
T Consensus 79 l~lL~~gG~i~iv~Y 93 (140)
T PF06962_consen 79 LELLKPGGIITIVVY 93 (140)
T ss_dssp HHHEEEEEEEEEEE-
T ss_pred HHhhccCCEEEEEEe
Confidence 999999999999874
No 257
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=97.49 E-value=0.0012 Score=55.58 Aligned_cols=97 Identities=18% Similarity=0.298 Sum_probs=68.2
Q ss_pred CCCCEEEEECCCcChHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEc-CCCCC--------CCCCC
Q 016921 157 KRPKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVG-DALQQ--------PFPDG 225 (380)
Q Consensus 157 ~~~~~vLDiGcGtG~~~~~l~~~~--~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~-d~~~~--------~~~~~ 225 (380)
.|+.+|||+||-.|.|+....++. ...|.|||+-... .++.+.++++ |+.+. .+|+.
T Consensus 68 ~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~~------------p~~Ga~~i~~~dvtdp~~~~ki~e~lp~r 135 (232)
T KOG4589|consen 68 RPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHIE------------PPEGATIIQGNDVTDPETYRKIFEALPNR 135 (232)
T ss_pred CCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeecc------------CCCCcccccccccCCHHHHHHHHHhCCCC
Confidence 469999999999999999988876 5689999985432 2245666666 77663 25678
Q ss_pred CccEEEeccccCCC-----CCHH-------HHHHHHHHhcCCCcEEEEEeccC
Q 016921 226 QFDLVWSMESGEHM-----PDKS-------KFVSELARVTAPAGTIIIVTWCH 266 (380)
Q Consensus 226 ~fD~V~~~~~l~~~-----~~~~-------~~l~~~~r~LkpgG~l~~~~~~~ 266 (380)
..|+|++... +.. .|-. .++.-+...++|+|.+++-.|..
T Consensus 136 ~VdvVlSDMa-pnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~w~g 187 (232)
T KOG4589|consen 136 PVDVVLSDMA-PNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKLWDG 187 (232)
T ss_pred cccEEEeccC-CCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEEecC
Confidence 8999987432 222 1222 34455566788999999987643
No 258
>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.49 E-value=3.6e-05 Score=62.41 Aligned_cols=55 Identities=20% Similarity=0.312 Sum_probs=44.2
Q ss_pred eEEEEcCCCCCCCCCCCccEEEeccccCCCC--CHHHHHHHHHHhcCCCcEEEEEec
Q 016921 210 VSFQVGDALQQPFPDGQFDLVWSMESGEHMP--DKSKFVSELARVTAPAGTIIIVTW 264 (380)
Q Consensus 210 v~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~--~~~~~l~~~~r~LkpgG~l~~~~~ 264 (380)
+.+++-.....+|.+++.|+|++-++++|+. +-..+++++++.|||||+|-++.+
T Consensus 31 vdlvc~As~e~~F~dns~d~iyaeHvlEHlt~~Eg~~alkechr~Lrp~G~LriAvP 87 (185)
T COG4627 31 VDLVCRASNESMFEDNSVDAIYAEHVLEHLTYDEGTSALKECHRFLRPGGKLRIAVP 87 (185)
T ss_pred cchhhhhhhhccCCCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCcEEEEEcC
Confidence 3334333344578899999999999999994 456799999999999999999874
No 259
>PRK10742 putative methyltransferase; Provisional
Probab=97.35 E-value=0.0014 Score=58.33 Aligned_cols=90 Identities=21% Similarity=0.255 Sum_probs=67.6
Q ss_pred HHHHHHcCCCCCCCCCCC--EEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHc------C--CCCCeEE
Q 016921 143 EETLRFAGVSEDPTKRPK--NVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAAR------G--LADKVSF 212 (380)
Q Consensus 143 ~~ll~~~~~~~~~~~~~~--~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~------~--~~~~v~~ 212 (380)
+.+++..+++. +. +|||+-+|+|..+..++.. |+.|+++|-++......+..+... + +..++++
T Consensus 76 ~~l~kAvglk~-----g~~p~VLD~TAGlG~Da~~las~-G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l 149 (250)
T PRK10742 76 EAVAKAVGIKG-----DYLPDVVDATAGLGRDAFVLASV-GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQL 149 (250)
T ss_pred cHHHHHhCCCC-----CCCCEEEECCCCccHHHHHHHHc-CCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEE
Confidence 45566666665 55 8999999999999999987 889999999999988888777653 2 1246888
Q ss_pred EEcCCCCC-CCCCCCccEEEeccccCC
Q 016921 213 QVGDALQQ-PFPDGQFDLVWSMESGEH 238 (380)
Q Consensus 213 ~~~d~~~~-~~~~~~fD~V~~~~~l~~ 238 (380)
+.+|..+. .-...+||+|++-=.+.|
T Consensus 150 ~~~da~~~L~~~~~~fDVVYlDPMfp~ 176 (250)
T PRK10742 150 IHASSLTALTDITPRPQVVYLDPMFPH 176 (250)
T ss_pred EeCcHHHHHhhCCCCCcEEEECCCCCC
Confidence 88887664 111247999988655555
No 260
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=97.34 E-value=0.00091 Score=56.98 Aligned_cols=103 Identities=23% Similarity=0.254 Sum_probs=71.1
Q ss_pred CCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcC------CCCCeEEEEcCCCCCCCCCCCccEEE
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARG------LADKVSFQVGDALQQPFPDGQFDLVW 231 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~-~~~v~giD~s~~~~~~a~~~~~~~~------~~~~v~~~~~d~~~~~~~~~~fD~V~ 231 (380)
...+.|||||-|.+...|+..+ ..-+.|.+|--..-++.+.++...+ ...|+.+...++...- .+-|..-.
T Consensus 61 kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~l--pn~f~kgq 138 (249)
T KOG3115|consen 61 KVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFL--PNFFEKGQ 138 (249)
T ss_pred cceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhc--cchhhhcc
Confidence 5679999999999999999988 6789999999998898888876643 2345666666655431 12222212
Q ss_pred eccccCCCCCH-------------HHHHHHHHHhcCCCcEEEEEe
Q 016921 232 SMESGEHMPDK-------------SKFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 232 ~~~~l~~~~~~-------------~~~l~~~~r~LkpgG~l~~~~ 263 (380)
..-.+..++|+ ...+.+..-+|++||.++...
T Consensus 139 Lskmff~fpdpHfk~~khk~rii~~~l~~eyay~l~~gg~~ytit 183 (249)
T KOG3115|consen 139 LSKMFFLFPDPHFKARKHKWRIITSTLLSEYAYVLREGGILYTIT 183 (249)
T ss_pred cccceeecCChhHhhhhccceeechhHHHHHHhhhhcCceEEEEe
Confidence 22222233333 257788889999999988865
No 261
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.31 E-value=0.0023 Score=51.71 Aligned_cols=115 Identities=18% Similarity=0.207 Sum_probs=84.4
Q ss_pred HHHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCC
Q 016921 140 RMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ 219 (380)
Q Consensus 140 ~~~~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 219 (380)
+.++.++..+.-. +..+.+|+|+|.|......++..-...+|+++++-.+.+++-+.-..|+...+.|..-|+.+
T Consensus 59 eQv~nVLSll~~n-----~~GklvDlGSGDGRiVlaaar~g~~~a~GvELNpwLVaysrl~a~R~g~~k~trf~RkdlwK 133 (199)
T KOG4058|consen 59 EQVENVLSLLRGN-----PKGKLVDLGSGDGRIVLAAARCGLRPAVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKDLWK 133 (199)
T ss_pred HHHHHHHHHccCC-----CCCcEEeccCCCceeehhhhhhCCCcCCceeccHHHHHHHHHHHHHHhcccchhhhhhhhhh
Confidence 3455666665433 47899999999999999988873367899999999999999998888888899999999888
Q ss_pred CCCCCCCccEEEeccccCCCCCHHHHHHHHHHhcCCCcEEEEEec
Q 016921 220 QPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (380)
Q Consensus 220 ~~~~~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~~ 264 (380)
..+. .|..|++..+=.-++| +-.++..-+..|..++.+-|
T Consensus 134 ~dl~--dy~~vviFgaes~m~d---Le~KL~~E~p~nt~vvacRF 173 (199)
T KOG4058|consen 134 VDLR--DYRNVVIFGAESVMPD---LEDKLRTELPANTRVVACRF 173 (199)
T ss_pred cccc--ccceEEEeehHHHHhh---hHHHHHhhCcCCCeEEEEec
Confidence 7654 4555554443333333 33455556777888887765
No 262
>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family. This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.
Probab=97.24 E-value=0.019 Score=52.29 Aligned_cols=171 Identities=15% Similarity=0.062 Sum_probs=99.9
Q ss_pred HHHHHHHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcC--CCCCeEEE
Q 016921 136 AAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARG--LADKVSFQ 213 (380)
Q Consensus 136 ~~~~~~~~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~--~~~~v~~~ 213 (380)
....+.++..+....-.. ...|+.+|||-=.-...+....+..++=+|. |+.++.-++.+.+.+ .+.+..++
T Consensus 64 ~~Rtr~~D~~i~~~~~~g-----~~qvV~LGaGlDTr~~Rl~~~~~~~~~EvD~-P~v~~~K~~~l~~~~~~~~~~~~~v 137 (260)
T TIGR00027 64 AVRTRFFDDFLLAAVAAG-----IRQVVILGAGLDTRAYRLPWPDGTRVFEVDQ-PAVLAFKEKVLAELGAEPPAHRRAV 137 (260)
T ss_pred HHHHHHHHHHHHHHHhcC-----CcEEEEeCCccccHHHhcCCCCCCeEEECCC-hHHHHHHHHHHHHcCCCCCCceEEe
Confidence 334455666655432121 3469999999877666664321345555555 556666666666543 24678889
Q ss_pred EcCCCCC--------CCCCCCccEEEeccccCCCCC--HHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchHHHHH
Q 016921 214 VGDALQQ--------PFPDGQFDLVWSMESGEHMPD--KSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQEL 283 (380)
Q Consensus 214 ~~d~~~~--------~~~~~~fD~V~~~~~l~~~~~--~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~ 283 (380)
..|+... .+..+..-++++-+++.+++. ..++++.+.+...||+.+++..... ... ..........
T Consensus 138 ~~Dl~~~w~~~L~~~gfd~~~ptl~i~EGvl~YL~~~~v~~ll~~i~~~~~~gs~l~~d~~~~--~~~--~~~~~~~~~~ 213 (260)
T TIGR00027 138 PVDLRQDWPAALAAAGFDPTAPTAWLWEGLLMYLTEEAVDALLAFIAELSAPGSRLAFDYVRP--LDG--EWRAGMRAPV 213 (260)
T ss_pred ccCchhhHHHHHHhCCCCCCCCeeeeecchhhcCCHHHHHHHHHHHHHhCCCCcEEEEEeccc--cch--hHHHHHHHHH
Confidence 9998621 122233446777788888854 4678999998888988888754332 100 0000011111
Q ss_pred HHHH--hhccCCCCCCCHHHHHHHHHhCCCcEEEE
Q 016921 284 LKKI--CDAYYLPAWCSTADYVKLLQSLSLEDIKA 316 (380)
Q Consensus 284 ~~~~--~~~~~~~~~~~~~~~~~ll~~aGf~~v~~ 316 (380)
.... ..........+++++.++|++.||+....
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gw~~~~~ 248 (260)
T TIGR00027 214 YHAARGVDGSGLVFGIDRADVAEWLAERGWRASEH 248 (260)
T ss_pred HHhhhcccccccccCCChhhHHHHHHHCCCeeecC
Confidence 1111 11111222467899999999999998753
No 263
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=97.22 E-value=0.00057 Score=66.20 Aligned_cols=98 Identities=22% Similarity=0.285 Sum_probs=64.8
Q ss_pred CCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCC-CCCCCCCCCccEEEeccccC
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDA-LQQPFPDGQFDLVWSMESGE 237 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~-~~~~~~~~~fD~V~~~~~l~ 237 (380)
-..|+|...|.|+++..|.+. . |......|..-.-.-..+-+.|+ +-.+ .|. +.++.-+.+||+|++.+++.
T Consensus 366 iRNVMDMnAg~GGFAAAL~~~-~--VWVMNVVP~~~~ntL~vIydRGL---IG~y-hDWCE~fsTYPRTYDLlHA~~lfs 438 (506)
T PF03141_consen 366 IRNVMDMNAGYGGFAAALIDD-P--VWVMNVVPVSGPNTLPVIYDRGL---IGVY-HDWCEAFSTYPRTYDLLHADGLFS 438 (506)
T ss_pred eeeeeeecccccHHHHHhccC-C--ceEEEecccCCCCcchhhhhccc---chhc-cchhhccCCCCcchhheehhhhhh
Confidence 467999999999999999875 2 33333333211111111222333 2122 233 33454569999999999888
Q ss_pred CCCC---HHHHHHHHHHhcCCCcEEEEEe
Q 016921 238 HMPD---KSKFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 238 ~~~~---~~~~l~~~~r~LkpgG~l~~~~ 263 (380)
...+ ...++-|+-|+|+|||.+++-|
T Consensus 439 ~~~~rC~~~~illEmDRILRP~G~~iiRD 467 (506)
T PF03141_consen 439 LYKDRCEMEDILLEMDRILRPGGWVIIRD 467 (506)
T ss_pred hhcccccHHHHHHHhHhhcCCCceEEEec
Confidence 7754 5789999999999999999976
No 264
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=97.20 E-value=0.0024 Score=55.36 Aligned_cols=102 Identities=18% Similarity=0.300 Sum_probs=57.6
Q ss_pred CCEEEEECCCcChHHHHHHHHc-----CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC----C----CCC
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKF-----GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP----F----PDG 225 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~-----~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~----~----~~~ 225 (380)
+..|+|+|.-.|+.+..+|..+ .++|+|+|++..... ++..+...+.++|+++++|..+.. . ...
T Consensus 33 Pd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~--~~a~e~hp~~~rI~~i~Gds~d~~~~~~v~~~~~~~ 110 (206)
T PF04989_consen 33 PDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHN--RKAIESHPMSPRITFIQGDSIDPEIVDQVRELASPP 110 (206)
T ss_dssp -SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT----S-GGGG----TTEEEEES-SSSTHHHHTSGSS----
T ss_pred CCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhc--hHHHhhccccCceEEEECCCCCHHHHHHHHHhhccC
Confidence 7899999999999888777643 479999999543321 122223345579999999987742 1 112
Q ss_pred CccEEEeccccCCCCCHHHHHHHHHHhcCCCcEEEEEe
Q 016921 226 QFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 226 ~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~ 263 (380)
...+|+ -.+-|.-.+..+.|+....++++|+++++.|
T Consensus 111 ~~vlVi-lDs~H~~~hvl~eL~~y~plv~~G~Y~IVeD 147 (206)
T PF04989_consen 111 HPVLVI-LDSSHTHEHVLAELEAYAPLVSPGSYLIVED 147 (206)
T ss_dssp SSEEEE-ESS----SSHHHHHHHHHHT--TT-EEEETS
T ss_pred CceEEE-ECCCccHHHHHHHHHHhCccCCCCCEEEEEe
Confidence 233333 3444444677888999999999999999976
No 265
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=97.16 E-value=0.0015 Score=58.01 Aligned_cols=79 Identities=24% Similarity=0.368 Sum_probs=59.7
Q ss_pred CCCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEEecccc
Q 016921 158 RPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESG 236 (380)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l 236 (380)
++.+|+|||||.--++....... +..++|+|++..+++.....+...++ ...+...|...-+ +....|+.+..=++
T Consensus 105 ~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~~--~~~~~v~Dl~~~~-~~~~~DlaLllK~l 181 (251)
T PF07091_consen 105 PPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLGV--PHDARVRDLLSDP-PKEPADLALLLKTL 181 (251)
T ss_dssp --SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT---CEEEEEE-TTTSH-TTSEESEEEEET-H
T ss_pred CCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhCC--CcceeEeeeeccC-CCCCcchhhHHHHH
Confidence 37899999999999998876654 68999999999999999999888775 4677777877653 46789999987777
Q ss_pred CCC
Q 016921 237 EHM 239 (380)
Q Consensus 237 ~~~ 239 (380)
+.+
T Consensus 182 p~l 184 (251)
T PF07091_consen 182 PCL 184 (251)
T ss_dssp HHH
T ss_pred HHH
Confidence 655
No 266
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=97.11 E-value=0.0062 Score=54.43 Aligned_cols=105 Identities=23% Similarity=0.153 Sum_probs=73.3
Q ss_pred CCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHH--H--HHHcCCCCCeEEEEcCCCCCC---CCCCC-ccEE
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANA--L--AAARGLADKVSFQVGDALQQP---FPDGQ-FDLV 230 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~--~--~~~~~~~~~v~~~~~d~~~~~---~~~~~-fD~V 230 (380)
..+|||+|+|+|..+..++...++.|+..|+.......... . .....+...+.+...+..+.+ +-... ||+|
T Consensus 87 ~~~vlELGsGtglvG~~aa~~~~~~v~ltD~~~~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~~Dli 166 (248)
T KOG2793|consen 87 YINVLELGSGTGLVGILAALLLGAEVVLTDLPKVVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPNPFDLI 166 (248)
T ss_pred ceeEEEecCCccHHHHHHHHHhcceeccCCchhhHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCCcccEE
Confidence 66899999999988888887668899999986554332222 1 111122235655555554432 11123 9999
Q ss_pred EeccccCCCCCHHHHHHHHHHhcCCCcEEEEEe
Q 016921 231 WSMESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 231 ~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~ 263 (380)
++..++++-...+.++..++..|..+|.+++..
T Consensus 167 lasDvvy~~~~~e~Lv~tla~ll~~~~~i~l~~ 199 (248)
T KOG2793|consen 167 LASDVVYEEESFEGLVKTLAFLLAKDGTIFLAY 199 (248)
T ss_pred EEeeeeecCCcchhHHHHHHHHHhcCCeEEEEE
Confidence 999999998888999999999999999655544
No 267
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=97.04 E-value=0.032 Score=49.41 Aligned_cols=128 Identities=16% Similarity=0.126 Sum_probs=72.2
Q ss_pred CCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCC---CCCccEEEecc
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFP---DGQFDLVWSME 234 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~---~~~fD~V~~~~ 234 (380)
+++||=||=+.- .++.++-.. ..+|+.+|+++..++..++.+++.|++ ++.+..|+.+. +| .++||++++.
T Consensus 45 gk~il~lGDDDL-tSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl~--i~~~~~DlR~~-LP~~~~~~fD~f~TD- 119 (243)
T PF01861_consen 45 GKRILFLGDDDL-TSLALALTGLPKRITVVDIDERLLDFINRVAEEEGLP--IEAVHYDLRDP-LPEELRGKFDVFFTD- 119 (243)
T ss_dssp T-EEEEES-TT--HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT----EEEE---TTS----TTTSS-BSEEEE--
T ss_pred CCEEEEEcCCcH-HHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCCc--eEEEEeccccc-CCHHHhcCCCEEEeC-
Confidence 889999995432 233333322 789999999999999999999999985 99999999873 33 3899999873
Q ss_pred ccCCCCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCcEE
Q 016921 235 SGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDI 314 (380)
Q Consensus 235 ~l~~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v 314 (380)
--+-+....-++.+....||..|...+..+++... +... --++++.+.+.||.+.
T Consensus 120 PPyT~~G~~LFlsRgi~~Lk~~g~~gy~~~~~~~~-----s~~~--------------------~~~~Q~~l~~~gl~i~ 174 (243)
T PF01861_consen 120 PPYTPEGLKLFLSRGIEALKGEGCAGYFGFTHKEA-----SPDK--------------------WLEVQRFLLEMGLVIT 174 (243)
T ss_dssp --SSHHHHHHHHHHHHHTB-STT-EEEEEE-TTT-------HHH--------------------HHHHHHHHHTS--EEE
T ss_pred CCCCHHHHHHHHHHHHHHhCCCCceEEEEEecCcC-----cHHH--------------------HHHHHHHHHHCCcCHH
Confidence 11122233568889999998777444433332210 0000 1256678889999887
Q ss_pred EE
Q 016921 315 KA 316 (380)
Q Consensus 315 ~~ 316 (380)
++
T Consensus 175 di 176 (243)
T PF01861_consen 175 DI 176 (243)
T ss_dssp EE
T ss_pred HH
Confidence 65
No 268
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=97.02 E-value=0.0045 Score=58.62 Aligned_cols=108 Identities=15% Similarity=0.169 Sum_probs=83.0
Q ss_pred CCCCCCEEEEECCCcChHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC---CCCCCccE
Q 016921 155 PTKRPKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP---FPDGQFDL 229 (380)
Q Consensus 155 ~~~~~~~vLDiGcGtG~~~~~l~~~~--~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~---~~~~~fD~ 229 (380)
..+++.||||+.+-.|.=+.++|... ...|++.|.+..-+...++++...|+ .+..+...|..++| ++. +||.
T Consensus 238 ~Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv-~ntiv~n~D~~ef~~~~~~~-~fDR 315 (460)
T KOG1122|consen 238 DPQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGV-TNTIVSNYDGREFPEKEFPG-SFDR 315 (460)
T ss_pred CCCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCC-CceEEEccCcccccccccCc-ccce
Confidence 44679999999999999888877755 46899999999999999999999897 46778888887664 444 8999
Q ss_pred EEec----c--ccCC------CC---C-------HHHHHHHHHHhcCCCcEEEEEec
Q 016921 230 VWSM----E--SGEH------MP---D-------KSKFVSELARVTAPAGTIIIVTW 264 (380)
Q Consensus 230 V~~~----~--~l~~------~~---~-------~~~~l~~~~r~LkpgG~l~~~~~ 264 (380)
|+.- + ++.- .. + ..++|-.+...+++||+|+-++-
T Consensus 316 VLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTC 372 (460)
T KOG1122|consen 316 VLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTC 372 (460)
T ss_pred eeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEee
Confidence 9852 2 2211 11 0 13577788999999999999874
No 269
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=96.88 E-value=0.0027 Score=60.17 Aligned_cols=74 Identities=15% Similarity=0.153 Sum_probs=58.7
Q ss_pred CCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCC-CCCCccEEEe
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPF-PDGQFDLVWS 232 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~-~~~~fD~V~~ 232 (380)
...|||||+|||.++...++..+-.|++++.-..|.+.|++...+.|..++|.++.-...+... +....|+++.
T Consensus 67 kv~vLdigtGTGLLSmMAvragaD~vtA~EvfkPM~d~arkI~~kng~SdkI~vInkrStev~vg~~~RadI~v~ 141 (636)
T KOG1501|consen 67 KVFVLDIGTGTGLLSMMAVRAGADSVTACEVFKPMVDLARKIMHKNGMSDKINVINKRSTEVKVGGSSRADIAVR 141 (636)
T ss_pred eEEEEEccCCccHHHHHHHHhcCCeEEeehhhchHHHHHHHHHhcCCCccceeeeccccceeeecCcchhhhhhH
Confidence 4578999999999999888876668999999999999999999999999999988766555431 1223555543
No 270
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.79 E-value=0.0078 Score=55.64 Aligned_cols=106 Identities=20% Similarity=0.299 Sum_probs=66.4
Q ss_pred CCEEEEECCCcChHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCC--CCCC-CCCccEEEec
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ--QPFP-DGQFDLVWSM 233 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~--~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~--~~~~-~~~fD~V~~~ 233 (380)
+.+|||+|.|.|.-+..+-.-+ -..++.++.|+..-+..-........ ....+...|+.. ++++ ...|++|+..
T Consensus 114 pqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t-~~td~r~s~vt~dRl~lp~ad~ytl~i~~ 192 (484)
T COG5459 114 PQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVST-EKTDWRASDVTEDRLSLPAADLYTLAIVL 192 (484)
T ss_pred cchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhccc-ccCCCCCCccchhccCCCccceeehhhhh
Confidence 5679999999887766655544 24677788888766655544432222 223333333322 2222 3456666665
Q ss_pred cccCCCCC---HHHHHHHHHHhcCCCcEEEEEecc
Q 016921 234 ESGEHMPD---KSKFVSELARVTAPAGTIIIVTWC 265 (380)
Q Consensus 234 ~~l~~~~~---~~~~l~~~~r~LkpgG~l~~~~~~ 265 (380)
.-|-+... ....++.+..++.|||.|++++.+
T Consensus 193 ~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivErG 227 (484)
T COG5459 193 DELLPDGNEKPIQVNIERLWNLLAPGGHLVIVERG 227 (484)
T ss_pred hhhccccCcchHHHHHHHHHHhccCCCeEEEEeCC
Confidence 55544422 345889999999999999999954
No 271
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=96.78 E-value=0.011 Score=53.82 Aligned_cols=89 Identities=18% Similarity=0.188 Sum_probs=73.0
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCC
Q 016921 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDAL 218 (380)
Q Consensus 141 ~~~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~--~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~ 218 (380)
++++.+..+.+.+ +...+|.--|.|+.+..+++++ ..+++|+|-++.+++.|+++....+ +++.+++.++.
T Consensus 11 Ll~E~i~~L~~~~-----~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~--~r~~~v~~~F~ 83 (314)
T COG0275 11 LLNEVVELLAPKP-----DGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFD--GRVTLVHGNFA 83 (314)
T ss_pred HHHHHHHhcccCC-----CcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccC--CcEEEEeCcHH
Confidence 6677777777665 8999999999999999999998 3679999999999999999987654 68999999887
Q ss_pred CCC-----CCCCCccEEEecccc
Q 016921 219 QQP-----FPDGQFDLVWSMESG 236 (380)
Q Consensus 219 ~~~-----~~~~~fD~V~~~~~l 236 (380)
++. ...+++|.|+...++
T Consensus 84 ~l~~~l~~~~i~~vDGiL~DLGV 106 (314)
T COG0275 84 NLAEALKELGIGKVDGILLDLGV 106 (314)
T ss_pred HHHHHHHhcCCCceeEEEEeccC
Confidence 752 224688988876544
No 272
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=96.67 E-value=0.0089 Score=62.15 Aligned_cols=104 Identities=22% Similarity=0.265 Sum_probs=63.3
Q ss_pred CCEEEEECCCcChHHHHHHHHc-------------CCEEEEEeCCH---HHHHHHH-----------HHHHHc-----CC
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKF-------------GAKCQGITLSP---VQAQRAN-----------ALAAAR-----GL 206 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~-------------~~~v~giD~s~---~~~~~a~-----------~~~~~~-----~~ 206 (380)
.-+|||+|-|+|.+.....+.+ ..+++.+|..| +.+..+- +..... |+
T Consensus 58 ~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~ 137 (662)
T PRK01747 58 RFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLPGC 137 (662)
T ss_pred cEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCCCc
Confidence 5799999999999877766433 13788888543 3333322 222111 11
Q ss_pred ------CC--CeEEEEcCCCCC-CCCCCCccEEEecccc-CCCCCH--HHHHHHHHHhcCCCcEEEEE
Q 016921 207 ------AD--KVSFQVGDALQQ-PFPDGQFDLVWSMESG-EHMPDK--SKFVSELARVTAPAGTIIIV 262 (380)
Q Consensus 207 ------~~--~v~~~~~d~~~~-~~~~~~fD~V~~~~~l-~~~~~~--~~~l~~~~r~LkpgG~l~~~ 262 (380)
.. ++.+..+|+.+. +--...||+|+....- ..-++. ..+++.++++++|||.+.-.
T Consensus 138 ~~~~~~~~~~~l~l~~gd~~~~~~~~~~~~d~~~lD~FsP~~np~~W~~~~~~~l~~~~~~~~~~~t~ 205 (662)
T PRK01747 138 HRLLFDDGRVTLDLWFGDANELLPQLDARADAWFLDGFAPAKNPDMWSPNLFNALARLARPGATLATF 205 (662)
T ss_pred eEEEecCCcEEEEEEecCHHHHHHhccccccEEEeCCCCCccChhhccHHHHHHHHHHhCCCCEEEEe
Confidence 01 234666777652 2112569999875322 222332 68999999999999988753
No 273
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=96.66 E-value=0.026 Score=56.21 Aligned_cols=100 Identities=19% Similarity=0.287 Sum_probs=70.2
Q ss_pred CCCCEEEEECCC-cChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCC-----------CC---
Q 016921 157 KRPKNVVDVGCG-IGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ-----------QP--- 221 (380)
Q Consensus 157 ~~~~~vLDiGcG-tG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-----------~~--- 221 (380)
.++.+|+=+|+| .|..+...++..|+.|+++|.+++-++.+++. | .++...|..+ +.
T Consensus 163 ~pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~aesl----G----A~~v~i~~~e~~~~~~gya~~~s~~~ 234 (509)
T PRK09424 163 VPPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVESM----G----AEFLELDFEEEGGSGDGYAKVMSEEF 234 (509)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHc----C----CeEEEeccccccccccchhhhcchhH
Confidence 359999999999 58888888888899999999999988887762 2 2322222211 00
Q ss_pred -------CCC--CCccEEEeccccCCCCCHHHHHHHHHHhcCCCcEEEEEec
Q 016921 222 -------FPD--GQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (380)
Q Consensus 222 -------~~~--~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~~ 264 (380)
+.+ ..+|+|+.......-+.+..+.+++.+.+||||.++..-.
T Consensus 235 ~~~~~~~~~~~~~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVdvg~ 286 (509)
T PRK09424 235 IKAEMALFAEQAKEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIVDLAA 286 (509)
T ss_pred HHHHHHHHHhccCCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEEEcc
Confidence 011 4699998766554333444446999999999999887654
No 274
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=96.60 E-value=0.0035 Score=57.97 Aligned_cols=89 Identities=20% Similarity=0.195 Sum_probs=62.1
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCC
Q 016921 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ 219 (380)
Q Consensus 141 ~~~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 219 (380)
+++++++.+...+ +..++|.--|.|+.+..+++.+ +++|+|+|.++.+++.|++++... .+++.++.+++.+
T Consensus 8 ll~Evl~~L~~~~-----~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~--~~r~~~~~~~F~~ 80 (310)
T PF01795_consen 8 LLKEVLEALNPKP-----GGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKF--DDRFIFIHGNFSN 80 (310)
T ss_dssp THHHHHHHHT--T-----T-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCC--CTTEEEEES-GGG
T ss_pred cHHHHHHhhCcCC-----CceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhc--cceEEEEeccHHH
Confidence 4566677666554 8899999999999999999987 789999999999999998876533 4689999999877
Q ss_pred CC-----C-CCCCccEEEecccc
Q 016921 220 QP-----F-PDGQFDLVWSMESG 236 (380)
Q Consensus 220 ~~-----~-~~~~fD~V~~~~~l 236 (380)
+. . ...++|.|+...++
T Consensus 81 l~~~l~~~~~~~~~dgiL~DLGv 103 (310)
T PF01795_consen 81 LDEYLKELNGINKVDGILFDLGV 103 (310)
T ss_dssp HHHHHHHTTTTS-EEEEEEE-S-
T ss_pred HHHHHHHccCCCccCEEEEcccc
Confidence 52 2 34578888875443
No 275
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=96.50 E-value=0.013 Score=51.86 Aligned_cols=91 Identities=26% Similarity=0.327 Sum_probs=53.2
Q ss_pred HHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHH---HHHHHcCCC-----CCeEEEEc
Q 016921 144 ETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRAN---ALAAARGLA-----DKVSFQVG 215 (380)
Q Consensus 144 ~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~---~~~~~~~~~-----~~v~~~~~ 215 (380)
.+++..+++. ....+|||.-+|-|.-+..++.. |++|++++-||.+....+ +++...... .+++++.+
T Consensus 64 ~l~kA~Glk~---~~~~~VLDaTaGLG~Da~vlA~~-G~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~ 139 (234)
T PF04445_consen 64 PLAKAVGLKP---GMRPSVLDATAGLGRDAFVLASL-GCKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHG 139 (234)
T ss_dssp HHHHHTT-BT---TB---EEETT-TTSHHHHHHHHH-T--EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES
T ss_pred HHHHHhCCCC---CCCCEEEECCCcchHHHHHHHcc-CCeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcC
Confidence 4556666654 11248999999999999999864 999999999998765544 333332211 37999999
Q ss_pred CCCC-CCCCCCCccEEEeccccCC
Q 016921 216 DALQ-QPFPDGQFDLVWSMESGEH 238 (380)
Q Consensus 216 d~~~-~~~~~~~fD~V~~~~~l~~ 238 (380)
|..+ +..++++||+|++-=++.+
T Consensus 140 d~~~~L~~~~~s~DVVY~DPMFp~ 163 (234)
T PF04445_consen 140 DALEYLRQPDNSFDVVYFDPMFPE 163 (234)
T ss_dssp -CCCHCCCHSS--SEEEE--S---
T ss_pred CHHHHHhhcCCCCCEEEECCCCCC
Confidence 9887 3455789999998766655
No 276
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=96.48 E-value=0.02 Score=55.82 Aligned_cols=125 Identities=16% Similarity=0.131 Sum_probs=87.7
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHc-----CCEEEEEeCCHHHHHHHHHHHHHcCCCCC
Q 016921 135 RAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF-----GAKCQGITLSPVQAQRANALAAARGLADK 209 (380)
Q Consensus 135 ~~~~~~~~~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~-----~~~v~giD~s~~~~~~a~~~~~~~~~~~~ 209 (380)
...++.....+++..+-.. .+....|+-+|+|.|-+.....+.. ..++++++-+|.++-..+.+ .-..+..+
T Consensus 346 ~~Yq~Ai~~AL~Drvpd~~--a~~~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~~-n~~~W~~~ 422 (649)
T KOG0822|consen 346 DQYQQAILKALLDRVPDES--AKTTTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQNR-NFECWDNR 422 (649)
T ss_pred HHHHHHHHHHHHhhCcccc--cCceEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhhh-chhhhcCe
Confidence 3444555555555544322 1125678899999999876654432 35799999999987766653 23345678
Q ss_pred eEEEEcCCCCCCCCCCCccEEEeccccCCCCCH---HHHHHHHHHhcCCCcEEEEEe
Q 016921 210 VSFQVGDALQQPFPDGQFDLVWSMESGEHMPDK---SKFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 210 v~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~~~---~~~l~~~~r~LkpgG~l~~~~ 263 (380)
|.++..|++.++-|.++.|++++ ..|.-+.|- .+.|..+-+.|||+|+.+=..
T Consensus 423 Vtii~~DMR~w~ap~eq~DI~VS-ELLGSFGDNELSPECLDG~q~fLkpdgIsIP~s 478 (649)
T KOG0822|consen 423 VTIISSDMRKWNAPREQADIIVS-ELLGSFGDNELSPECLDGAQKFLKPDGISIPSS 478 (649)
T ss_pred eEEEeccccccCCchhhccchHH-HhhccccCccCCHHHHHHHHhhcCCCceEccch
Confidence 99999999999855689998875 555555543 689999999999998765543
No 277
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=96.47 E-value=0.028 Score=52.70 Aligned_cols=95 Identities=22% Similarity=0.168 Sum_probs=68.3
Q ss_pred CCCCEEEEECCC-cChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcC-CCCCCCCCCCccEEEecc
Q 016921 157 KRPKNVVDVGCG-IGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGD-ALQQPFPDGQFDLVWSME 234 (380)
Q Consensus 157 ~~~~~vLDiGcG-tG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d-~~~~~~~~~~fD~V~~~~ 234 (380)
.|+.+|+=+|+| .|..+..+|+..+++|+++|.+++-++.|++.-+ -.++... ......-.+.||+|+..-
T Consensus 165 ~pG~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~lGA-------d~~i~~~~~~~~~~~~~~~d~ii~tv 237 (339)
T COG1064 165 KPGKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKLELAKKLGA-------DHVINSSDSDALEAVKEIADAIIDTV 237 (339)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHHHHHHHhCC-------cEEEEcCCchhhHHhHhhCcEEEECC
Confidence 358999988887 5678888888779999999999999998887432 2333322 211111123499988653
Q ss_pred ccCCCCCHHHHHHHHHHhcCCCcEEEEEecc
Q 016921 235 SGEHMPDKSKFVSELARVTAPAGTIIIVTWC 265 (380)
Q Consensus 235 ~l~~~~~~~~~l~~~~r~LkpgG~l~~~~~~ 265 (380)
. ...+....+.|++||.+++.-..
T Consensus 238 ~-------~~~~~~~l~~l~~~G~~v~vG~~ 261 (339)
T COG1064 238 G-------PATLEPSLKALRRGGTLVLVGLP 261 (339)
T ss_pred C-------hhhHHHHHHHHhcCCEEEEECCC
Confidence 2 45688899999999999998754
No 278
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=96.34 E-value=0.015 Score=55.75 Aligned_cols=101 Identities=18% Similarity=0.191 Sum_probs=78.2
Q ss_pred CCEEEEECCCcChHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCC-CeEEEEcCCCCCC-CCCCCccEEEecc
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLAD-KVSFQVGDALQQP-FPDGQFDLVWSME 234 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~--~~~v~giD~s~~~~~~a~~~~~~~~~~~-~v~~~~~d~~~~~-~~~~~fD~V~~~~ 234 (380)
+.+|||.=+|+|.=++..+.+. ...|+.-|+|++.++..+++++.+++.. ++++...|+..+- ...+.||+|=..
T Consensus 50 ~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~~~~~v~~~DAn~ll~~~~~~fD~IDlD- 128 (377)
T PF02005_consen 50 PIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLEDERIEVSNMDANVLLYSRQERFDVIDLD- 128 (377)
T ss_dssp -EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SGCCEEEEES-HHHHHCHSTT-EEEEEE--
T ss_pred CceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccCceEEEehhhHHHHhhhccccCCEEEeC-
Confidence 5689999999999999999885 3689999999999999999999999877 6899999987642 246789998652
Q ss_pred ccCCCCCHHHHHHHHHHhcCCCcEEEEEe
Q 016921 235 SGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 235 ~l~~~~~~~~~l~~~~r~LkpgG~l~~~~ 263 (380)
-+..+..++..+.+.++.||.|.++.
T Consensus 129 ---PfGSp~pfldsA~~~v~~gGll~vTa 154 (377)
T PF02005_consen 129 ---PFGSPAPFLDSALQAVKDGGLLCVTA 154 (377)
T ss_dssp ----SS--HHHHHHHHHHEEEEEEEEEEE
T ss_pred ---CCCCccHhHHHHHHHhhcCCEEEEec
Confidence 33467889999999999999999975
No 279
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=96.12 E-value=0.11 Score=48.86 Aligned_cols=60 Identities=18% Similarity=0.218 Sum_probs=44.7
Q ss_pred HHHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHc---------CCEEEEEeCCHHHHHHHHHHHHHc
Q 016921 140 RMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF---------GAKCQGITLSPVQAQRANALAAAR 204 (380)
Q Consensus 140 ~~~~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~---------~~~v~giD~s~~~~~~a~~~~~~~ 204 (380)
..+-+++...+.. .+..++|||.|+|.++..+++.. ..++..|++|+...+.-+++++..
T Consensus 64 ~~~~~~wq~~g~p-----~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~~~ 132 (370)
T COG1565 64 EQFLQLWQELGRP-----APLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLKAT 132 (370)
T ss_pred HHHHHHHHHhcCC-----CCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHHhcc
Confidence 3344444444433 26789999999999999988754 468999999999888777776554
No 280
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=96.00 E-value=0.067 Score=51.75 Aligned_cols=99 Identities=19% Similarity=0.192 Sum_probs=68.0
Q ss_pred CCCEEEEECCCc-ChHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCC-C-----CC-CCCCcc
Q 016921 158 RPKNVVDVGCGI-GGSSRYLAKKFGA-KCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ-Q-----PF-PDGQFD 228 (380)
Q Consensus 158 ~~~~vLDiGcGt-G~~~~~l~~~~~~-~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~-----~~-~~~~fD 228 (380)
++.+||.+|||. |..+..+++..+. +++++|.+++..+.+++.. + +.++...-.+ . .+ ....+|
T Consensus 184 ~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~~---~----~~vi~~~~~~~~~~~l~~~~~~~~~D 256 (386)
T cd08283 184 PGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSHL---G----AETINFEEVDDVVEALRELTGGRGPD 256 (386)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcC---C----cEEEcCCcchHHHHHHHHHcCCCCCC
Confidence 488999999987 8888999988776 6999999999988877642 1 1222111110 1 11 234689
Q ss_pred EEEecccc-----------CC----CCCHHHHHHHHHHhcCCCcEEEEEe
Q 016921 229 LVWSMESG-----------EH----MPDKSKFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 229 ~V~~~~~l-----------~~----~~~~~~~l~~~~r~LkpgG~l~~~~ 263 (380)
+|+-.-.- .| ..+....++++.+.|+++|.+++..
T Consensus 257 ~vld~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~g 306 (386)
T cd08283 257 VCIDAVGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSIIG 306 (386)
T ss_pred EEEECCCCcccccccccccccccccccCchHHHHHHHHHhccCCEEEEEc
Confidence 88764321 11 1445678999999999999998875
No 281
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=95.79 E-value=0.17 Score=50.43 Aligned_cols=106 Identities=22% Similarity=0.279 Sum_probs=75.7
Q ss_pred CCEEEEECCCcChHHHHHHHHcC-----CEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCC-----CCCCcc
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKFG-----AKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPF-----PDGQFD 228 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~-----~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~-----~~~~fD 228 (380)
..+|.|-.||+|.+.....+..+ ..++|.|+++.....++.+.--+|....+....+|-..-|. ..+.||
T Consensus 187 ~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~~~~i~~~dtl~~~~~~~~~~~~~~D 266 (489)
T COG0286 187 RNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIEGDANIRHGDTLSNPKHDDKDDKGKFD 266 (489)
T ss_pred CCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCCccccccccccccCCcccccCCcccee
Confidence 66999999999998888777652 56999999999999999988777764344556665544332 236799
Q ss_pred EEEeccccC---CC---------------------C-CHHHHHHHHHHhcCCCcEEEEEec
Q 016921 229 LVWSMESGE---HM---------------------P-DKSKFVSELARVTAPAGTIIIVTW 264 (380)
Q Consensus 229 ~V~~~~~l~---~~---------------------~-~~~~~l~~~~r~LkpgG~l~~~~~ 264 (380)
+|+++--+. +. . ...+.++.+...|+|||+..+...
T Consensus 267 ~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l~~~g~aaivl~ 327 (489)
T COG0286 267 FVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLKPGGRAAIVLP 327 (489)
T ss_pred EEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhcCCCceEEEEec
Confidence 888742221 00 0 115689999999999997666553
No 282
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=95.78 E-value=0.079 Score=46.39 Aligned_cols=103 Identities=14% Similarity=0.198 Sum_probs=65.2
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHH-HHHcCCEEEEEeCCHHHHHHHHHHHHHc-CCCCCeE
Q 016921 134 HRAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYL-AKKFGAKCQGITLSPVQAQRANALAAAR-GLADKVS 211 (380)
Q Consensus 134 ~~~~~~~~~~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l-~~~~~~~v~giD~s~~~~~~a~~~~~~~-~~~~~v~ 211 (380)
-|....+.+..+|....-.. ..+..++||||.|..-.=-.+ ...+|.+.+|.|+++..++.|+..+..+ ++...++
T Consensus 56 gRAdYih~laDLL~s~~g~~--~~~~i~~LDIGvGAnCIYPliG~~eYgwrfvGseid~~sl~sA~~ii~~N~~l~~~I~ 133 (292)
T COG3129 56 GRADYIHHLADLLASTSGQI--PGKNIRILDIGVGANCIYPLIGVHEYGWRFVGSEIDSQSLSSAKAIISANPGLERAIR 133 (292)
T ss_pred ChhHHHHHHHHHHHhcCCCC--CcCceEEEeeccCcccccccccceeecceeecCccCHHHHHHHHHHHHcCcchhhhee
Confidence 34455555556655433211 135778999988754321111 1223889999999999999999998776 6666677
Q ss_pred EEEcCCCC-C----CCCCCCccEEEeccccCC
Q 016921 212 FQVGDALQ-Q----PFPDGQFDLVWSMESGEH 238 (380)
Q Consensus 212 ~~~~d~~~-~----~~~~~~fD~V~~~~~l~~ 238 (380)
+....-.+ + .-.++.||++.|+--+|.
T Consensus 134 lr~qk~~~~if~giig~nE~yd~tlCNPPFh~ 165 (292)
T COG3129 134 LRRQKDSDAIFNGIIGKNERYDATLCNPPFHD 165 (292)
T ss_pred EEeccCccccccccccccceeeeEecCCCcch
Confidence 66543222 1 122688999999876653
No 283
>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=95.76 E-value=0.019 Score=47.32 Aligned_cols=130 Identities=18% Similarity=0.146 Sum_probs=77.2
Q ss_pred CCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHH-HHHHHHHcCCCCCe-EEEEcCCCC-CCCCCCCccEEEecc
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQR-ANALAAARGLADKV-SFQVGDALQ-QPFPDGQFDLVWSME 234 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~-~~~v~giD~s~~~~~~-a~~~~~~~~~~~~v-~~~~~d~~~-~~~~~~~fD~V~~~~ 234 (380)
+++++-+|+.. -|...++-.. .++|.-++.++--++. .+ +++ .+...|+.. ..--.++||.+.+..
T Consensus 2 ~~~g~V~GS~~-PwvEv~aL~~GA~~iltveyn~L~i~~~~~---------dr~ssi~p~df~~~~~~y~~~fD~~as~~ 71 (177)
T PF03269_consen 2 GKSGLVVGSMQ-PWVEVMALQHGAAKILTVEYNKLEIQEEFR---------DRLSSILPVDFAKNWQKYAGSFDFAASFS 71 (177)
T ss_pred CceEEEEecCC-chhhHHHHHcCCceEEEEeecccccCcccc---------cccccccHHHHHHHHHHhhccchhhheec
Confidence 56788888774 4454454444 4568888876521111 01 111 111122111 111247899999999
Q ss_pred ccCCCC-----CH------HHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHHHHH
Q 016921 235 SGEHMP-----DK------SKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYV 303 (380)
Q Consensus 235 ~l~~~~-----~~------~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (380)
+++|+. |+ ...+.++.++|||||.|++..+...+.. .+..++.+.+..+.
T Consensus 72 siEh~GLGRYGDPidp~Gdl~~m~~i~~vLK~GG~L~l~vPvG~d~i-------------------~fNahRiYg~~rL~ 132 (177)
T PF03269_consen 72 SIEHFGLGRYGDPIDPIGDLRAMAKIKCVLKPGGLLFLGVPVGTDAI-------------------QFNAHRIYGPIRLA 132 (177)
T ss_pred hhccccccccCCCCCccccHHHHHHHHHhhccCCeEEEEeecCCcce-------------------EEecceeecHhHHH
Confidence 999972 32 4688899999999999999875432211 12223345666777
Q ss_pred HHHHhCCCcEEEEEec
Q 016921 304 KLLQSLSLEDIKAEDW 319 (380)
Q Consensus 304 ~ll~~aGf~~v~~~~~ 319 (380)
.++. ||+.+..-..
T Consensus 133 mm~~--gfe~i~tfs~ 146 (177)
T PF03269_consen 133 MMFY--GFEWIDTFSG 146 (177)
T ss_pred HHhC--CcEEEeeecc
Confidence 7776 9998876433
No 284
>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.76 E-value=0.024 Score=49.41 Aligned_cols=94 Identities=22% Similarity=0.286 Sum_probs=69.0
Q ss_pred CCEEEEECCCcChHHHHHHHHc-C------C---EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-------
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKF-G------A---KCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP------- 221 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~-~------~---~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~------- 221 (380)
-.+++|+..-.|.|+..+.+++ . . .+++||+.+-. .+ +.|.-+++|+.+..
T Consensus 42 v~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~Ma-----------PI-~GV~qlq~DIT~~stae~Ii~ 109 (294)
T KOG1099|consen 42 VKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMA-----------PI-EGVIQLQGDITSASTAEAIIE 109 (294)
T ss_pred hhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccCC-----------cc-CceEEeecccCCHhHHHHHHH
Confidence 4689999999999999999876 1 1 39999996532 22 46888999998742
Q ss_pred -CCCCCccEEEeccc-----cCCCCCH------HHHHHHHHHhcCCCcEEEEEec
Q 016921 222 -FPDGQFDLVWSMES-----GEHMPDK------SKFVSELARVTAPAGTIIIVTW 264 (380)
Q Consensus 222 -~~~~~fD~V~~~~~-----l~~~~~~------~~~l~~~~r~LkpgG~l~~~~~ 264 (380)
|..++.|+|+|.++ +|-+.+. .++|.-...+|||||.++---+
T Consensus 110 hfggekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVaKif 164 (294)
T KOG1099|consen 110 HFGGEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVAKIF 164 (294)
T ss_pred HhCCCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeehhhh
Confidence 56679999999654 3433322 2466677889999999887544
No 285
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=95.54 E-value=0.25 Score=45.66 Aligned_cols=99 Identities=17% Similarity=0.221 Sum_probs=70.0
Q ss_pred CCCEEEEECCC-cChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC---------CCCCCC
Q 016921 158 RPKNVVDVGCG-IGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ---------PFPDGQ 226 (380)
Q Consensus 158 ~~~~vLDiGcG-tG~~~~~l~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~---------~~~~~~ 226 (380)
.+.+||=+|+| .|..+...|+.+ ..+|+.+|+++.-++.|++ + |. .+.......... .+....
T Consensus 169 ~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~-~---Ga--~~~~~~~~~~~~~~~~~~v~~~~g~~~ 242 (354)
T KOG0024|consen 169 KGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKK-F---GA--TVTDPSSHKSSPQELAELVEKALGKKQ 242 (354)
T ss_pred cCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHH-h---CC--eEEeeccccccHHHHHHHHHhhccccC
Confidence 49999999999 588888888888 4689999999999999998 3 21 111111111111 122345
Q ss_pred ccEEEeccccCCCCCHHHHHHHHHHhcCCCcEEEEEeccCCC
Q 016921 227 FDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRD 268 (380)
Q Consensus 227 fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~ 268 (380)
+|+.+-...+ +..++.+...+++||.+++..+....
T Consensus 243 ~d~~~dCsG~------~~~~~aai~a~r~gGt~vlvg~g~~~ 278 (354)
T KOG0024|consen 243 PDVTFDCSGA------EVTIRAAIKATRSGGTVVLVGMGAEE 278 (354)
T ss_pred CCeEEEccCc------hHHHHHHHHHhccCCEEEEeccCCCc
Confidence 8888766544 45678889999999999998876544
No 286
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=95.49 E-value=0.14 Score=48.59 Aligned_cols=97 Identities=24% Similarity=0.256 Sum_probs=61.7
Q ss_pred CCCEEEEECCC-cChHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEEeccc
Q 016921 158 RPKNVVDVGCG-IGGSSRYLAKKFGA-KCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMES 235 (380)
Q Consensus 158 ~~~~vLDiGcG-tG~~~~~l~~~~~~-~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~ 235 (380)
++.+||=+|+| .|..+..+++..|+ +|+++|.+++.++.+++ .|...-+.....+..+.....+.+|+|+-...
T Consensus 169 ~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~----lGa~~vi~~~~~~~~~~~~~~g~~D~vid~~G 244 (343)
T PRK09880 169 QGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLARE----MGADKLVNPQNDDLDHYKAEKGYFDVSFEVSG 244 (343)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHH----cCCcEEecCCcccHHHHhccCCCCCEEEECCC
Confidence 47889989887 46677777877776 69999999998887765 23210011111111111111235888875322
Q ss_pred cCCCCCHHHHHHHHHHhcCCCcEEEEEec
Q 016921 236 GEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (380)
Q Consensus 236 l~~~~~~~~~l~~~~r~LkpgG~l~~~~~ 264 (380)
. ...++.+.+.|++||++++...
T Consensus 245 -----~-~~~~~~~~~~l~~~G~iv~~G~ 267 (343)
T PRK09880 245 -----H-PSSINTCLEVTRAKGVMVQVGM 267 (343)
T ss_pred -----C-HHHHHHHHHHhhcCCEEEEEcc
Confidence 2 3467888999999999998764
No 287
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=95.48 E-value=0.052 Score=49.26 Aligned_cols=106 Identities=19% Similarity=0.256 Sum_probs=77.8
Q ss_pred CCCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHc--CC-CCCeEEEEcCCCCC--CCCCCCccEEE
Q 016921 158 RPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAAR--GL-ADKVSFQVGDALQQ--PFPDGQFDLVW 231 (380)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~-~~~v~giD~s~~~~~~a~~~~~~~--~~-~~~v~~~~~d~~~~--~~~~~~fD~V~ 231 (380)
++.+||-||.|.|.......++- -..+.-+|++...++..++..... |. .+++.+..+|...+ ....++||+|+
T Consensus 121 npkkvlVVgggDggvlrevikH~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~~dVii 200 (337)
T KOG1562|consen 121 NPKKVLVVGGGDGGVLREVIKHKSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENPFDVII 200 (337)
T ss_pred CCCeEEEEecCCccceeeeeccccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCCceEEE
Confidence 48899999999999998887764 357899999999998888876553 22 35788888886553 23468999988
Q ss_pred eccccCCCCC----HHHHHHHHHHhcCCCcEEEEEe
Q 016921 232 SMESGEHMPD----KSKFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 232 ~~~~l~~~~~----~~~~l~~~~r~LkpgG~l~~~~ 263 (380)
.-..=--.+- ...+++.+.+.||+||++++..
T Consensus 201 ~dssdpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q~ 236 (337)
T KOG1562|consen 201 TDSSDPVGPACALFQKPYFGLVLDALKGDGVVCTQG 236 (337)
T ss_pred EecCCccchHHHHHHHHHHHHHHHhhCCCcEEEEec
Confidence 6322111111 1457788999999999998865
No 288
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=95.45 E-value=0.22 Score=46.87 Aligned_cols=110 Identities=15% Similarity=0.120 Sum_probs=76.5
Q ss_pred CCCCCCEEEEECCCcChHHHHHHHHc-CC----EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC--------
Q 016921 155 PTKRPKNVVDVGCGIGGSSRYLAKKF-GA----KCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-------- 221 (380)
Q Consensus 155 ~~~~~~~vLDiGcGtG~~~~~l~~~~-~~----~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-------- 221 (380)
...|+.+|||+.+-.|.=+..+.+.. .. .|++-|.++.-+.......... ..+++.+...|+...|
T Consensus 152 ~v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l-~~~~~~v~~~~~~~~p~~~~~~~~ 230 (375)
T KOG2198|consen 152 GVKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRL-PSPNLLVTNHDASLFPNIYLKDGN 230 (375)
T ss_pred ccCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhcc-CCcceeeecccceeccccccccCc
Confidence 34569999999999999888888765 22 7999999998887777776332 2345555555554433
Q ss_pred -CCCCCccEEEec------cccCCCCCH-----------------HHHHHHHHHhcCCCcEEEEEecc
Q 016921 222 -FPDGQFDLVWSM------ESGEHMPDK-----------------SKFVSELARVTAPAGTIIIVTWC 265 (380)
Q Consensus 222 -~~~~~fD~V~~~------~~l~~~~~~-----------------~~~l~~~~r~LkpgG~l~~~~~~ 265 (380)
.....||-|++. .++.+.++. -.++++..++||+||.++-++-+
T Consensus 231 ~~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTCS 298 (375)
T KOG2198|consen 231 DKEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYSTCS 298 (375)
T ss_pred hhhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEeccC
Confidence 123569999862 222222211 25788999999999999998743
No 289
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=95.37 E-value=0.06 Score=45.73 Aligned_cols=104 Identities=17% Similarity=0.253 Sum_probs=76.6
Q ss_pred CCEEEEECCCcChHHHHHHHHc---C--CEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-------CCCCC
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKF---G--AKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-------FPDGQ 226 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~---~--~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-------~~~~~ 226 (380)
+..|+|+|.-.|..++..|... | .+|.++|++-..++.+... . ++|.|+.++..+.. ..++.
T Consensus 70 P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e-----~-p~i~f~egss~dpai~eqi~~~~~~y 143 (237)
T COG3510 70 PSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAARE-----V-PDILFIEGSSTDPAIAEQIRRLKNEY 143 (237)
T ss_pred CceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhc-----C-CCeEEEeCCCCCHHHHHHHHHHhcCC
Confidence 7889999999999888777643 4 7899999987665443221 1 58999999987752 22333
Q ss_pred ccEEEeccccCCCCCHHHHHHHHHHhcCCCcEEEEEeccCCC
Q 016921 227 FDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRD 268 (380)
Q Consensus 227 fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~ 268 (380)
--+.+|..+-|+....-+.++-..++|..|-++++.+-...+
T Consensus 144 ~kIfvilDsdHs~~hvLAel~~~~pllsaG~Y~vVeDs~v~d 185 (237)
T COG3510 144 PKIFVILDSDHSMEHVLAELKLLAPLLSAGDYLVVEDSNVND 185 (237)
T ss_pred CcEEEEecCCchHHHHHHHHHHhhhHhhcCceEEEecccccC
Confidence 345556677777777778888999999999999998754433
No 290
>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.
Probab=95.34 E-value=0.58 Score=45.02 Aligned_cols=102 Identities=22% Similarity=0.246 Sum_probs=60.7
Q ss_pred CCCEEEEECCCcChHH----HHHHHHcC----CEEEEEeC----CHHHHHHHHHHHHH----cCCCCCeEEEEc---CCC
Q 016921 158 RPKNVVDVGCGIGGSS----RYLAKKFG----AKCQGITL----SPVQAQRANALAAA----RGLADKVSFQVG---DAL 218 (380)
Q Consensus 158 ~~~~vLDiGcGtG~~~----~~l~~~~~----~~v~giD~----s~~~~~~a~~~~~~----~~~~~~v~~~~~---d~~ 218 (380)
+..+|+|+|.|.|.-- ..|+.+.+ .++|||+. +...++.+.+++.+ .|++ .+|... +.+
T Consensus 110 ~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~~~~~l~~~g~rL~~fA~~lgv~--fef~~v~~~~~e 187 (374)
T PF03514_consen 110 RRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSGSADELQETGRRLAEFARSLGVP--FEFHPVVVESLE 187 (374)
T ss_pred cceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCCcHHHHHHHHHHHHHHHHHcCcc--EEEEecccCchh
Confidence 3789999999998733 33444321 48999999 77777777766533 3554 555553 333
Q ss_pred CC-----CCCCCCccEEEeccccCCCCC-------HHHHHHHHHHhcCCCcEEEE
Q 016921 219 QQ-----PFPDGQFDLVWSMESGEHMPD-------KSKFVSELARVTAPAGTIII 261 (380)
Q Consensus 219 ~~-----~~~~~~fD~V~~~~~l~~~~~-------~~~~l~~~~r~LkpgG~l~~ 261 (380)
++ ...++..=+|-+...+||+.+ +...+=...+.|+|.-.+++
T Consensus 188 ~l~~~~l~~~~~E~laVn~~~~Lh~l~~~~~~~~~~~~~~L~~ir~L~P~vvv~~ 242 (374)
T PF03514_consen 188 DLDPSMLRLRPGEALAVNCMFQLHHLLDESGALENPRDAFLRVIRSLNPKVVVLV 242 (374)
T ss_pred hCCHHHhCccCCcEEEEEeehhhhhhccccccccchHHHHHHHHHhcCCCEEEEE
Confidence 32 122333444556677788852 22233345557899855444
No 291
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=95.32 E-value=0.086 Score=52.43 Aligned_cols=96 Identities=17% Similarity=0.214 Sum_probs=66.6
Q ss_pred CCCEEEEECCC-cChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCC-----------------
Q 016921 158 RPKNVVDVGCG-IGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ----------------- 219 (380)
Q Consensus 158 ~~~~vLDiGcG-tG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~----------------- 219 (380)
++.+||=+|+| .|..+..++...|+.|+++|.++..++.++. .| .+++..|..+
T Consensus 163 p~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~rle~a~~----lG----a~~v~v~~~e~g~~~~gYa~~~s~~~~ 234 (511)
T TIGR00561 163 PPAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQS----MG----AEFLELDFKEEGGSGDGYAKVMSEEFI 234 (511)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH----cC----CeEEeccccccccccccceeecCHHHH
Confidence 47899999999 5778888888779999999999998777665 22 2333333211
Q ss_pred ------CCCCCCCccEEEeccccCCCCCHHHHHHHHHHhcCCCcEEEE
Q 016921 220 ------QPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIII 261 (380)
Q Consensus 220 ------~~~~~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~ 261 (380)
++-.-..+|+|+..-.+..-+.+.-+.+++.+.+|||+.++-
T Consensus 235 ~~~~~~~~e~~~~~DIVI~TalipG~~aP~Lit~emv~~MKpGsvIVD 282 (511)
T TIGR00561 235 AAEMELFAAQAKEVDIIITTALIPGKPAPKLITEEMVDSMKAGSVIVD 282 (511)
T ss_pred HHHHHHHHHHhCCCCEEEECcccCCCCCCeeehHHHHhhCCCCCEEEE
Confidence 010125699997765554444444577889999999998764
No 292
>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]
Probab=95.23 E-value=0.047 Score=50.56 Aligned_cols=105 Identities=19% Similarity=0.208 Sum_probs=77.2
Q ss_pred CCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHH-------HHHHHHHcCC-CCCeEEEEcCCCCCCCC-CCCcc
Q 016921 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQR-------ANALAAARGL-ADKVSFQVGDALQQPFP-DGQFD 228 (380)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~-------a~~~~~~~~~-~~~v~~~~~d~~~~~~~-~~~fD 228 (380)
+|.-|.|-=.|||.+....+. +|+.|+|.||+-.++.. .+.++++.|. +--+.+..+|....++. +..||
T Consensus 208 pGdivyDPFVGTGslLvsaa~-FGa~viGtDIDyr~vragrg~~~si~aNFkQYg~~~~fldvl~~D~sn~~~rsn~~fD 286 (421)
T KOG2671|consen 208 PGDIVYDPFVGTGSLLVSAAH-FGAYVIGTDIDYRTVRAGRGEDESIKANFKQYGSSSQFLDVLTADFSNPPLRSNLKFD 286 (421)
T ss_pred CCCEEecCccccCceeeehhh-hcceeeccccchheeecccCCCcchhHhHHHhCCcchhhheeeecccCcchhhcceee
Confidence 599999999999999888776 59999999999988762 3455666663 33467888998887643 56899
Q ss_pred EEEec------------------------cccCCCCC---------HHHHHHHHHHhcCCCcEEEEEe
Q 016921 229 LVWSM------------------------ESGEHMPD---------KSKFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 229 ~V~~~------------------------~~l~~~~~---------~~~~l~~~~r~LkpgG~l~~~~ 263 (380)
.|+|. ....|++. ....+.-.++.|.-||++++--
T Consensus 287 aIvcDPPYGVRe~~rk~~~k~~~r~~~~~~~~~h~p~~~~ysl~~~v~dll~fss~~L~~ggrlv~w~ 354 (421)
T KOG2671|consen 287 AIVCDPPYGVREGARKTGKKKSVRTTEESSRGDHYPSTEQYSLSSLVYDLLCFSSRRLVDGGRLVFWL 354 (421)
T ss_pred EEEeCCCcchhhhhhhhcccCcccCcccccccccCCccchhHHHHHHhhHHHhhHhhhhcCceEEEec
Confidence 99982 11123322 1346777889999999998854
No 293
>PRK11524 putative methyltransferase; Provisional
Probab=95.23 E-value=0.082 Score=48.86 Aligned_cols=58 Identities=12% Similarity=0.059 Sum_probs=48.5
Q ss_pred HHHHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHH
Q 016921 139 VRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAA 203 (380)
Q Consensus 139 ~~~~~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~ 203 (380)
..+++.++.... .++..|||-=||+|..+....+. +.+++|+|++++..+.|++++..
T Consensus 195 ~~L~erlI~~~S------~~GD~VLDPF~GSGTT~~AA~~l-gR~~IG~Ei~~~Y~~~a~~Rl~~ 252 (284)
T PRK11524 195 EALLKRIILASS------NPGDIVLDPFAGSFTTGAVAKAS-GRKFIGIEINSEYIKMGLRRLDV 252 (284)
T ss_pred HHHHHHHHHHhC------CCCCEEEECCCCCcHHHHHHHHc-CCCEEEEeCCHHHHHHHHHHHHh
Confidence 457777777654 35999999999999988876664 99999999999999999999853
No 294
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=95.12 E-value=0.28 Score=45.97 Aligned_cols=93 Identities=18% Similarity=0.313 Sum_probs=64.0
Q ss_pred CCCEEEEECCC-cChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC------CCCCCCccEE
Q 016921 158 RPKNVVDVGCG-IGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ------PFPDGQFDLV 230 (380)
Q Consensus 158 ~~~~vLDiGcG-tG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~------~~~~~~fD~V 230 (380)
++.+||..|+| .|..+..+++..|.+|++++.++...+.+++ .+. ..+..+-... ....+.+|+|
T Consensus 165 ~~~~vli~g~g~vG~~~~~la~~~G~~V~~~~~s~~~~~~~~~----~g~----~~~~~~~~~~~~~~~~~~~~~~~D~v 236 (338)
T cd08254 165 PGETVLVIGLGGLGLNAVQIAKAMGAAVIAVDIKEEKLELAKE----LGA----DEVLNSLDDSPKDKKAAGLGGGFDVI 236 (338)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHH----hCC----CEEEcCCCcCHHHHHHHhcCCCceEE
Confidence 47889998877 4788888888878999999999998877754 232 1111111110 1234579988
Q ss_pred EeccccCCCCCHHHHHHHHHHhcCCCcEEEEEec
Q 016921 231 WSMESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (380)
Q Consensus 231 ~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~~ 264 (380)
+.... ....++++.+.|+++|.++....
T Consensus 237 id~~g------~~~~~~~~~~~l~~~G~~v~~g~ 264 (338)
T cd08254 237 FDFVG------TQPTFEDAQKAVKPGGRIVVVGL 264 (338)
T ss_pred EECCC------CHHHHHHHHHHhhcCCEEEEECC
Confidence 75321 14578899999999999988653
No 295
>KOG2920 consensus Predicted methyltransferase [General function prediction only]
Probab=95.08 E-value=0.027 Score=50.95 Aligned_cols=103 Identities=12% Similarity=0.095 Sum_probs=63.4
Q ss_pred CCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHH-----------HHHHcCCCCCeEEEEcCCCCCCC-CCC
Q 016921 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANA-----------LAAARGLADKVSFQVGDALQQPF-PDG 225 (380)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~-----------~~~~~~~~~~v~~~~~d~~~~~~-~~~ 225 (380)
.+.+|||+|||.|...+.........+...|.+...+....- ..++.. .-..+...+..+.-+ ..+
T Consensus 116 ~~k~vLELgCg~~Lp~i~~~~~~~~~~~fqD~na~vl~~~t~pn~~~~~~~~~~~~e~~--~~~~i~~s~l~dg~~~~t~ 193 (282)
T KOG2920|consen 116 SGKRVLELGCGAALPGIFAFVKGAVSVHFQDFNAEVLRLVTLPNILVNSHAGVEEKENH--KVDEILNSLLSDGVFNHTE 193 (282)
T ss_pred cCceeEecCCcccccchhhhhhccceeeeEecchhheeeecccceecchhhhhhhhhcc--cceeccccccccchhhhcc
Confidence 389999999999999988877644778888888776621110 000000 001111110001110 123
Q ss_pred --CccEEEeccccCCCCCHHHH-HHHHHHhcCCCcEEEEE
Q 016921 226 --QFDLVWSMESGEHMPDKSKF-VSELARVTAPAGTIIIV 262 (380)
Q Consensus 226 --~fD~V~~~~~l~~~~~~~~~-l~~~~r~LkpgG~l~~~ 262 (380)
.||+|.+..+++.......+ .......++++|.+++.
T Consensus 194 ~~~ydlIlsSetiy~~~~~~~~~~~~r~~l~~~D~~~~~a 233 (282)
T KOG2920|consen 194 RTHYDLILSSETIYSIDSLAVLYLLHRPCLLKTDGVFYVA 233 (282)
T ss_pred ccchhhhhhhhhhhCcchhhhhHhhhhhhcCCccchhhhh
Confidence 79999999999887666555 56667777888887764
No 296
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=94.99 E-value=0.072 Score=48.31 Aligned_cols=76 Identities=17% Similarity=0.326 Sum_probs=48.7
Q ss_pred CCEEEEECCCcChHHHHHHHHc---------CCEEEEEeCCHHHHHHHHHHHHHc-----CCCCCeEEEEcCCCCCCCCC
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKF---------GAKCQGITLSPVQAQRANALAAAR-----GLADKVSFQVGDALQQPFPD 224 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~---------~~~v~giD~s~~~~~~a~~~~~~~-----~~~~~v~~~~~d~~~~~~~~ 224 (380)
+.+|+|+|+|+|.++..+++.+ ..+++.||+|+.+.+.-++++... ....++.+ ..+..+.|
T Consensus 19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~~~~~~~~~~~~i~w-~~~l~~~p--- 94 (252)
T PF02636_consen 19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSEHAPKDTEFGDPIRW-LDDLEEVP--- 94 (252)
T ss_dssp -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCCH---STTTCGCEEE-ESSGGCS----
T ss_pred CcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhhhcccccccCCccch-hhhhhccc---
Confidence 4799999999999999998865 148999999999988877776542 13335666 33443333
Q ss_pred CCccEEEeccccCCC
Q 016921 225 GQFDLVWSMESGEHM 239 (380)
Q Consensus 225 ~~fD~V~~~~~l~~~ 239 (380)
..-+|+++.++-.+
T Consensus 95 -~~~~iiaNE~~DAl 108 (252)
T PF02636_consen 95 -FPGFIIANELFDAL 108 (252)
T ss_dssp -CCEEEEEESSGGGS
T ss_pred -CCEEEEEeeehhcC
Confidence 23445555555444
No 297
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=94.77 E-value=0.1 Score=46.04 Aligned_cols=54 Identities=20% Similarity=0.255 Sum_probs=41.5
Q ss_pred HHHHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHH
Q 016921 139 VRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANA 199 (380)
Q Consensus 139 ~~~~~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~ 199 (380)
..+++.++.... .++..|||.=||+|..+....+. +.+.+|+|+++...+.|++
T Consensus 178 ~~l~~~lI~~~t------~~gdiVlDpF~GSGTT~~aa~~l-~R~~ig~E~~~~y~~~a~~ 231 (231)
T PF01555_consen 178 VELIERLIKAST------NPGDIVLDPFAGSGTTAVAAEEL-GRRYIGIEIDEEYCEIAKK 231 (231)
T ss_dssp HHHHHHHHHHHS-------TT-EEEETT-TTTHHHHHHHHT-T-EEEEEESSHHHHHHHHH
T ss_pred HHHHHHHHHhhh------ccceeeehhhhccChHHHHHHHc-CCeEEEEeCCHHHHHHhcC
Confidence 457777777654 34899999999999998877664 8999999999999998864
No 298
>PHA01634 hypothetical protein
Probab=94.70 E-value=0.23 Score=39.33 Aligned_cols=46 Identities=13% Similarity=0.088 Sum_probs=40.1
Q ss_pred CCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHc
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAAR 204 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~ 204 (380)
+.+|+|||.+.|..++..+-+....|+++++++...+..++..+..
T Consensus 29 ~KtV~dIGA~iGdSaiYF~l~GAK~Vva~E~~~kl~k~~een~k~n 74 (156)
T PHA01634 29 QRTIQIVGADCGSSALYFLLRGASFVVQYEKEEKLRKKWEEVCAYF 74 (156)
T ss_pred CCEEEEecCCccchhhHHhhcCccEEEEeccCHHHHHHHHHHhhhh
Confidence 8899999999999999998875568999999999999988876543
No 299
>PRK13699 putative methylase; Provisional
Probab=94.64 E-value=0.1 Score=46.54 Aligned_cols=52 Identities=17% Similarity=0.326 Sum_probs=34.1
Q ss_pred EEEEcCCCCC--CCCCCCccEEEec--ccc--CC-----C--C---C-HHHHHHHHHHhcCCCcEEEEE
Q 016921 211 SFQVGDALQQ--PFPDGQFDLVWSM--ESG--EH-----M--P---D-KSKFVSELARVTAPAGTIIIV 262 (380)
Q Consensus 211 ~~~~~d~~~~--~~~~~~fD~V~~~--~~l--~~-----~--~---~-~~~~l~~~~r~LkpgG~l~~~ 262 (380)
+++++|..+. .++++++|+|+.. +.+ .. + . + ....+.+++|+|||||.+++.
T Consensus 3 ~l~~gD~le~l~~lpd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~if 71 (227)
T PRK13699 3 RFILGNCIDVMARFPDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVSF 71 (227)
T ss_pred eEEechHHHHHHhCCccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence 4567776554 4677888888864 111 00 0 0 1 247889999999999988763
No 300
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=94.62 E-value=0.19 Score=47.30 Aligned_cols=100 Identities=17% Similarity=0.157 Sum_probs=78.6
Q ss_pred CCEEEEECCCcChHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCC-CCCccEEEecccc
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKFGA-KCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFP-DGQFDLVWSMESG 236 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~-~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~~fD~V~~~~~l 236 (380)
+.+|||-=+|||.=++..+...+. +|+.-|+||...+.+++++..+.. .+...+..|+..+-.. ...||+|=.
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N~~-~~~~v~n~DAN~lm~~~~~~fd~IDi---- 127 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLNSG-EDAEVINKDANALLHELHRAFDVIDI---- 127 (380)
T ss_pred CeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhcCc-ccceeecchHHHHHHhcCCCccEEec----
Confidence 678999999999999999988754 899999999999999999987632 3455666777664222 367887753
Q ss_pred CCCCCHHHHHHHHHHhcCCCcEEEEEe
Q 016921 237 EHMPDKSKFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 237 ~~~~~~~~~l~~~~r~LkpgG~l~~~~ 263 (380)
.-+..+..++..+.+.++.||.|.++-
T Consensus 128 DPFGSPaPFlDaA~~s~~~~G~l~vTA 154 (380)
T COG1867 128 DPFGSPAPFLDAALRSVRRGGLLCVTA 154 (380)
T ss_pred CCCCCCchHHHHHHHHhhcCCEEEEEe
Confidence 233466789999999999999999864
No 301
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=94.62 E-value=0.39 Score=45.83 Aligned_cols=95 Identities=22% Similarity=0.226 Sum_probs=66.9
Q ss_pred CCEEEEECCCc-ChHHHHHHHHcC-CEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCC-CC-----CCCC-CCccE
Q 016921 159 PKNVVDVGCGI-GGSSRYLAKKFG-AKCQGITLSPVQAQRANALAAARGLADKVSFQVGDAL-QQ-----PFPD-GQFDL 229 (380)
Q Consensus 159 ~~~vLDiGcGt-G~~~~~l~~~~~-~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~-~~-----~~~~-~~fD~ 229 (380)
+.+|+=+|||. |.++..+++..| .+|+.+|.++.-++.|++.... ........ .. .... ..+|+
T Consensus 169 ~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~-------~~~~~~~~~~~~~~~~~~t~g~g~D~ 241 (350)
T COG1063 169 GGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGA-------DVVVNPSEDDAGAEILELTGGRGADV 241 (350)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCC-------eEeecCccccHHHHHHHHhCCCCCCE
Confidence 44999999994 888888888774 7899999999999999874421 11111111 10 1112 36999
Q ss_pred EEeccccCCCCCHHHHHHHHHHhcCCCcEEEEEeccC
Q 016921 230 VWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCH 266 (380)
Q Consensus 230 V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~~~~ 266 (380)
++-... ....+..+.+.++|||.+++.-...
T Consensus 242 vie~~G------~~~~~~~ai~~~r~gG~v~~vGv~~ 272 (350)
T COG1063 242 VIEAVG------SPPALDQALEALRPGGTVVVVGVYG 272 (350)
T ss_pred EEECCC------CHHHHHHHHHHhcCCCEEEEEeccC
Confidence 886544 2458899999999999999987543
No 302
>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=94.61 E-value=0.034 Score=53.90 Aligned_cols=102 Identities=17% Similarity=0.145 Sum_probs=83.5
Q ss_pred CCCEEEEECCCcChHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC----CCCCCCccEEE
Q 016921 158 RPKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ----PFPDGQFDLVW 231 (380)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~--~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~----~~~~~~fD~V~ 231 (380)
++.+|||.=|++|.-++..+.+. ..+|++.|.++..++..+.++.-++..+.++....|+..+ +-....||+|-
T Consensus 109 ~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~~ive~~~~DA~~lM~~~~~~~~~FDvID 188 (525)
T KOG1253|consen 109 KSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVEDIVEPHHSDANVLMYEHPMVAKFFDVID 188 (525)
T ss_pred CcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCchhhcccccchHHHHHHhccccccccceEe
Confidence 47899999999999999999987 3589999999999999999888777777778888887654 23357899986
Q ss_pred eccccCCCCCHHHHHHHHHHhcCCCcEEEEEe
Q 016921 232 SMESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 232 ~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~ 263 (380)
.. -+..+..+|..+.+.++.||.|.++.
T Consensus 189 LD----PyGs~s~FLDsAvqav~~gGLL~vT~ 216 (525)
T KOG1253|consen 189 LD----PYGSPSPFLDSAVQAVRDGGLLCVTC 216 (525)
T ss_pred cC----CCCCccHHHHHHHHHhhcCCEEEEEe
Confidence 42 22355789999999999999999964
No 303
>PRK13699 putative methylase; Provisional
Probab=94.59 E-value=0.18 Score=44.96 Aligned_cols=58 Identities=17% Similarity=0.123 Sum_probs=47.0
Q ss_pred HHHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHc
Q 016921 140 RMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAAR 204 (380)
Q Consensus 140 ~~~~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~ 204 (380)
.+++.++.... .++..|||-=||+|..+....+. +.+++|+|+++...+.+.+++...
T Consensus 151 ~l~~~~i~~~s------~~g~~vlDpf~Gsgtt~~aa~~~-~r~~~g~e~~~~y~~~~~~r~~~~ 208 (227)
T PRK13699 151 TSLQPLIESFT------HPNAIVLDPFAGSGSTCVAALQS-GRRYIGIELLEQYHRAGQQRLAAV 208 (227)
T ss_pred HHHHHHHHHhC------CCCCEEEeCCCCCCHHHHHHHHc-CCCEEEEecCHHHHHHHHHHHHHH
Confidence 45666665443 24889999999999998877664 889999999999999999998654
No 304
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=94.51 E-value=1.1 Score=39.81 Aligned_cols=105 Identities=15% Similarity=0.178 Sum_probs=70.7
Q ss_pred CCEEEEECCCcChHHHHHHHHc-----CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC--CCCCC-CccEE
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKF-----GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ--PFPDG-QFDLV 230 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~-----~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~~-~fD~V 230 (380)
+...+|+|+|+..=+..+.+.+ ..+++.||+|...+...-+.+...-..-.+.-+++|.+.- ..+.. .==++
T Consensus 79 ~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~l~v~~l~~~~~~~La~~~~~~~Rl~~ 158 (321)
T COG4301 79 ACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPGLEVNALCGDYELALAELPRGGRRLFV 158 (321)
T ss_pred cceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCCCeEeehhhhHHHHHhcccCCCeEEEE
Confidence 6789999999998887777765 2689999999998865444333322112355566676531 12222 22234
Q ss_pred EeccccCCCC--CHHHHHHHHHHhcCCCcEEEEEe
Q 016921 231 WSMESGEHMP--DKSKFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 231 ~~~~~l~~~~--~~~~~l~~~~r~LkpgG~l~~~~ 263 (380)
+...++.++. +-..++..+...|+||-++++..
T Consensus 159 flGStlGN~tp~e~~~Fl~~l~~a~~pGd~~LlGv 193 (321)
T COG4301 159 FLGSTLGNLTPGECAVFLTQLRGALRPGDYFLLGV 193 (321)
T ss_pred EecccccCCChHHHHHHHHHHHhcCCCcceEEEec
Confidence 4556777772 34678999999999999999864
No 305
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=94.45 E-value=0.73 Score=40.17 Aligned_cols=99 Identities=20% Similarity=0.228 Sum_probs=64.8
Q ss_pred CCEEEEECCCcC----hHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCC-CCCCCCCccEEEe
Q 016921 159 PKNVVDVGCGIG----GSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ-QPFPDGQFDLVWS 232 (380)
Q Consensus 159 ~~~vLDiGcGtG----~~~~~l~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~~~~~fD~V~~ 232 (380)
...++++.|+.| .+++..|.+. +.++++|-+++.-+...++.....++.+.++|+.++..+ +-..-...|+++.
T Consensus 42 AkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~~~~~~vEfvvg~~~e~~~~~~~~iDF~vV 121 (218)
T PF07279_consen 42 AKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEAGLSDVVEFVVGEAPEEVMPGLKGIDFVVV 121 (218)
T ss_pred ceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhccccccceEEecCCHHHHHhhccCCCEEEE
Confidence 678999976643 2344444443 889999999998888888888777776678999988533 2112356888886
Q ss_pred ccccCCCCCHHHHHHHHHHhcC--CCcEEEEEe
Q 016921 233 MESGEHMPDKSKFVSELARVTA--PAGTIIIVT 263 (380)
Q Consensus 233 ~~~l~~~~~~~~~l~~~~r~Lk--pgG~l~~~~ 263 (380)
..- .+.+.+++.+.++ |.|-+++..
T Consensus 122 Dc~------~~d~~~~vl~~~~~~~~GaVVV~~ 148 (218)
T PF07279_consen 122 DCK------REDFAARVLRAAKLSPRGAVVVCY 148 (218)
T ss_pred eCC------chhHHHHHHHHhccCCCceEEEEe
Confidence 542 2333334444444 567777765
No 306
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=94.41 E-value=0.18 Score=47.49 Aligned_cols=42 Identities=38% Similarity=0.523 Sum_probs=35.5
Q ss_pred CCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHH
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANAL 200 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~ 200 (380)
-..|+|+|.|.|.++..+.-.++..|.+||-|....+.|++.
T Consensus 154 i~~vvD~GaG~G~LSr~lSl~y~lsV~aIegsq~~~~ra~rL 195 (476)
T KOG2651|consen 154 IDQVVDVGAGQGHLSRFLSLGYGLSVKAIEGSQRLVERAQRL 195 (476)
T ss_pred CCeeEEcCCCchHHHHHHhhccCceEEEeccchHHHHHHHHH
Confidence 346999999999999999988899999999997766666543
No 307
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=94.26 E-value=0.93 Score=38.24 Aligned_cols=131 Identities=15% Similarity=0.095 Sum_probs=77.5
Q ss_pred ECCCcChHHHHHHHHc--CCEEEEE--eCCHHHHHHH---HHHHHHcCCCCCeEEEEcCCCCCC----CCCCCccEEEec
Q 016921 165 VGCGIGGSSRYLAKKF--GAKCQGI--TLSPVQAQRA---NALAAARGLADKVSFQVGDALQQP----FPDGQFDLVWSM 233 (380)
Q Consensus 165 iGcGtG~~~~~l~~~~--~~~v~gi--D~s~~~~~~a---~~~~~~~~~~~~v~~~~~d~~~~~----~~~~~fD~V~~~ 233 (380)
||=|.=.++..|++.. +..+++. |...+..+.- ..++....-..-......|+.++. ...+.||.|+.+
T Consensus 3 vGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~~g~~V~~~VDat~l~~~~~~~~~~FDrIiFN 82 (166)
T PF10354_consen 3 VGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELRELGVTVLHGVDATKLHKHFRLKNQRFDRIIFN 82 (166)
T ss_pred eeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhhcCCccccCCCCCcccccccccCCcCCEEEEe
Confidence 5556666777788876 3455554 4433333222 233322211112234566887763 356889999875
Q ss_pred cccCCCC------C---------HHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCC
Q 016921 234 ESGEHMP------D---------KSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCS 298 (380)
Q Consensus 234 ~~l~~~~------~---------~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (380)
+ -|.. + ...+++.+..+|+++|.+.|+-.... ++..
T Consensus 83 F--PH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~~~-------py~~-------------------- 133 (166)
T PF10354_consen 83 F--PHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKDGQ-------PYDS-------------------- 133 (166)
T ss_pred C--CCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCC-------CCcc--------------------
Confidence 4 3443 1 13578889999999999999763211 1111
Q ss_pred HHHHHHHHHhCCCcEEEEEecCCCcCC
Q 016921 299 TADYVKLLQSLSLEDIKAEDWSQNVAP 325 (380)
Q Consensus 299 ~~~~~~ll~~aGf~~v~~~~~~~~~~~ 325 (380)
=.+.++.+++||..++...+.....+
T Consensus 134 -W~i~~lA~~~gl~l~~~~~F~~~~yp 159 (166)
T PF10354_consen 134 -WNIEELAAEAGLVLVRKVPFDPSDYP 159 (166)
T ss_pred -ccHHHHHHhcCCEEEEEecCCHHHCC
Confidence 13557888899999998877755443
No 308
>COG3315 O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=94.18 E-value=0.95 Score=42.05 Aligned_cols=174 Identities=18% Similarity=0.149 Sum_probs=100.9
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcC--CCCCeEE
Q 016921 135 RAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARG--LADKVSF 212 (380)
Q Consensus 135 ~~~~~~~~~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~--~~~~v~~ 212 (380)
.....+.+++.+...-... -..|+-+|||--.-+..+-...+..|+-+|. |+.++.=++.+++.+ ++.++.+
T Consensus 74 ~a~Rtr~fD~~~~~~~~~g-----~~qvViLgaGLDTRayRl~~~~~~~vfEvD~-Pevi~~K~~~l~e~~~~~~~~~~~ 147 (297)
T COG3315 74 LAARTRYFDDFVRAALDAG-----IRQVVILGAGLDTRAYRLDWPKGTRVFEVDL-PEVIEFKKKLLAERGATPPAHRRL 147 (297)
T ss_pred HHHHHHHHHHHHHHHHHhc-----ccEEEEeccccccceeecCCCCCCeEEECCC-cHHHHHHHHHhhhcCCCCCceEEE
Confidence 3445556666665443221 4679999999655554443322456777777 666676666666654 2347899
Q ss_pred EEcCCCCCC---------CCCCCccEEEeccccCCCCC--HHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchHHH
Q 016921 213 QVGDALQQP---------FPDGQFDLVWSMESGEHMPD--KSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQ 281 (380)
Q Consensus 213 ~~~d~~~~~---------~~~~~fD~V~~~~~l~~~~~--~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~ 281 (380)
+..|+.+.. +..+.-=++++-+++.+++. ..+++..+.....||-.++.............. .....
T Consensus 148 Va~Dl~~~dw~~~L~~~G~d~~~pt~~iaEGLl~YL~~~~v~~ll~~I~~~~~~gS~~~~~~~~~~~~~~~~~--~~~~~ 225 (297)
T COG3315 148 VAVDLREDDWPQALAAAGFDRSRPTLWIAEGLLMYLPEEAVDRLLSRIAALSAPGSRVAFDYSLPGSLRDRLR--RPAAR 225 (297)
T ss_pred EeccccccchHHHHHhcCCCcCCCeEEEeccccccCCHHHHHHHHHHHHHhCCCCceEEEeccccHHHHhccc--chhhh
Confidence 999998532 22344446777888888854 467899999999888887776531111100000 00000
Q ss_pred HHHHHH-hhccCC-CCCCCHHHHHHHHHhCCCcEEEE
Q 016921 282 ELLKKI-CDAYYL-PAWCSTADYVKLLQSLSLEDIKA 316 (380)
Q Consensus 282 ~~~~~~-~~~~~~-~~~~~~~~~~~ll~~aGf~~v~~ 316 (380)
...... ...... -......++..+|.+.||..+..
T Consensus 226 ~~~~~~~~~~~e~~~~~~~~~e~~~~l~~~g~~~~~~ 262 (297)
T COG3315 226 KTMRGEDLDRGELVYFGDDPAEIETWLAERGWRSTLN 262 (297)
T ss_pred hhccccccccccceeccCCHHHHHHHHHhcCEEEEec
Confidence 000000 000000 11245899999999999987654
No 309
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=93.95 E-value=1 Score=35.05 Aligned_cols=84 Identities=24% Similarity=0.269 Sum_probs=56.5
Q ss_pred CCcChHHHHHHHHc--C-CEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC----CCCCCccEEEeccccCCC
Q 016921 167 CGIGGSSRYLAKKF--G-AKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP----FPDGQFDLVWSMESGEHM 239 (380)
Q Consensus 167 cGtG~~~~~l~~~~--~-~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~----~~~~~fD~V~~~~~l~~~ 239 (380)
||.|..+..+++.+ + ..|+.+|.+++..+.++. ..+.++.+|..+.. ..-+..|.|++...
T Consensus 4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~--------~~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~---- 71 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELRE--------EGVEVIYGDATDPEVLERAGIEKADAVVILTD---- 71 (116)
T ss_dssp ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHH--------TTSEEEES-TTSHHHHHHTTGGCESEEEEESS----
T ss_pred EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHh--------cccccccccchhhhHHhhcCccccCEEEEccC----
Confidence 57778888888776 4 489999999998877765 23789999998742 22356787776532
Q ss_pred CCH--HHHHHHHHHhcCCCcEEEEEe
Q 016921 240 PDK--SKFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 240 ~~~--~~~l~~~~r~LkpgG~l~~~~ 263 (380)
+. ...+-...+.+.|...+++..
T Consensus 72 -~d~~n~~~~~~~r~~~~~~~ii~~~ 96 (116)
T PF02254_consen 72 -DDEENLLIALLARELNPDIRIIARV 96 (116)
T ss_dssp -SHHHHHHHHHHHHHHTTTSEEEEEE
T ss_pred -CHHHHHHHHHHHHHHCCCCeEEEEE
Confidence 33 234445666677887777754
No 310
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=93.93 E-value=0.19 Score=46.12 Aligned_cols=103 Identities=18% Similarity=0.170 Sum_probs=77.8
Q ss_pred CCCCEEEEECCC-cChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEEeccc
Q 016921 157 KRPKNVVDVGCG-IGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMES 235 (380)
Q Consensus 157 ~~~~~vLDiGcG-tG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~ 235 (380)
-++.+|.=||.| .|..+..+|--.++.|+.+|+|..-+.+....+. .++...-.+...+...-.+.|+|+..-.
T Consensus 166 V~~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd~f~-----~rv~~~~st~~~iee~v~~aDlvIgaVL 240 (371)
T COG0686 166 VLPAKVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDDLFG-----GRVHTLYSTPSNIEEAVKKADLVIGAVL 240 (371)
T ss_pred CCCccEEEECCccccchHHHHHhccCCeeEEEecCHHHHhhhhHhhC-----ceeEEEEcCHHHHHHHhhhccEEEEEEE
Confidence 457788999999 5888888888779999999999987776655442 4566666665554323357899987666
Q ss_pred cCCCCCHHHHHHHHHHhcCCCcEEEEEec
Q 016921 236 GEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (380)
Q Consensus 236 l~~~~~~~~~l~~~~r~LkpgG~l~~~~~ 264 (380)
+---..|.-+.+++...+|||+.++=.-.
T Consensus 241 IpgakaPkLvt~e~vk~MkpGsVivDVAi 269 (371)
T COG0686 241 IPGAKAPKLVTREMVKQMKPGSVIVDVAI 269 (371)
T ss_pred ecCCCCceehhHHHHHhcCCCcEEEEEEE
Confidence 66666778889999999999998876543
No 311
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=93.89 E-value=0.62 Score=43.93 Aligned_cols=90 Identities=18% Similarity=0.130 Sum_probs=60.6
Q ss_pred CCCEEEEECCC-cChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEEecccc
Q 016921 158 RPKNVVDVGCG-IGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESG 236 (380)
Q Consensus 158 ~~~~vLDiGcG-tG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l 236 (380)
++.+||=.|+| .|..+..+++..|++|++++.++.-++.+++ .|.. .++ |..+. ..+.+|+++.....
T Consensus 165 ~g~~VlV~G~g~iG~~a~~~a~~~G~~vi~~~~~~~~~~~a~~----~Ga~---~vi--~~~~~--~~~~~d~~i~~~~~ 233 (329)
T TIGR02822 165 PGGRLGLYGFGGSAHLTAQVALAQGATVHVMTRGAAARRLALA----LGAA---SAG--GAYDT--PPEPLDAAILFAPA 233 (329)
T ss_pred CCCEEEEEcCCHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHH----hCCc---eec--ccccc--CcccceEEEECCCc
Confidence 48899999976 4666677777778899999999988777665 3321 111 11111 12457876543322
Q ss_pred CCCCCHHHHHHHHHHhcCCCcEEEEEec
Q 016921 237 EHMPDKSKFVSELARVTAPAGTIIIVTW 264 (380)
Q Consensus 237 ~~~~~~~~~l~~~~r~LkpgG~l~~~~~ 264 (380)
...+....+.|++||++++...
T Consensus 234 ------~~~~~~~~~~l~~~G~~v~~G~ 255 (329)
T TIGR02822 234 ------GGLVPPALEALDRGGVLAVAGI 255 (329)
T ss_pred ------HHHHHHHHHhhCCCcEEEEEec
Confidence 2478889999999999988764
No 312
>PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function.
Probab=93.84 E-value=0.11 Score=47.88 Aligned_cols=107 Identities=19% Similarity=0.241 Sum_probs=72.4
Q ss_pred CCCEEEEECCCcChHHHHHHHHc---------------------CCEEEEEeCCHH--HHHHHHHHHHHc----------
Q 016921 158 RPKNVVDVGCGIGGSSRYLAKKF---------------------GAKCQGITLSPV--QAQRANALAAAR---------- 204 (380)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~---------------------~~~v~giD~s~~--~~~~a~~~~~~~---------- 204 (380)
+..+||-||.|.|.-...++..+ ...|+.||+.+- .+......+...
T Consensus 86 ~~~~VlCIGGGAGAElVAlAa~~~~~~~~~~s~~~~~~~~~~~~~l~itlvDiAdWs~VV~~L~~~i~s~p~~sk~a~~~ 165 (315)
T PF11312_consen 86 KSLRVLCIGGGAGAELVALAAAFRTRSSEFLSKSPSGVSLSSPPSLSITLVDIADWSSVVDRLTTTITSPPPLSKYASAA 165 (315)
T ss_pred cCceEEEECCChHHHHHHHHHHHhhcccccCCcccccccccCCCcceEEEEEecChHHHHHHHHHhccCCCCcccccccc
Confidence 35799999999987555555433 037999998753 333333322222
Q ss_pred CC----C--CCeEEEEcCCCCCCCC-------CCCccEEEeccccCCC-----CCHHHHHHHHHHhcCCCcEEEEEec
Q 016921 205 GL----A--DKVSFQVGDALQQPFP-------DGQFDLVWSMESGEHM-----PDKSKFVSELARVTAPAGTIIIVTW 264 (380)
Q Consensus 205 ~~----~--~~v~~~~~d~~~~~~~-------~~~fD~V~~~~~l~~~-----~~~~~~l~~~~r~LkpgG~l~~~~~ 264 (380)
.+ + -++.|.+.|+..+..+ ....|+|+..+++.-+ ..-.++|..+-..++||..|+|+|-
T Consensus 166 ~~~~~~~~~~~~~F~~~DvL~~~~~~l~~ll~~~~~~LITLlFTlNELfs~s~~kTt~FLl~Lt~~~~~GslLLVvDS 243 (315)
T PF11312_consen 166 NWPLIEPDRFNVSFTQQDVLSLSEDDLKSLLGPPSPDLITLLFTLNELFSTSISKTTKFLLRLTDICPPGSLLLVVDS 243 (315)
T ss_pred ccccCCccceeeeEEecccccCChHHHHHHhccchhHHHHHHHHHHHHHhcChHHHHHHHHHHHhhcCCCcEEEEEcC
Confidence 00 1 1478999999886532 1357888888777544 3457899999999999999999984
No 313
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=93.77 E-value=0.05 Score=41.74 Aligned_cols=32 Identities=31% Similarity=0.445 Sum_probs=27.1
Q ss_pred CCCEEEEECCCcChHHHHHHHHcCCEEEEEeCC
Q 016921 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLS 190 (380)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s 190 (380)
+....+|||||.|.+..-|.+. |..-.|+|.-
T Consensus 58 ~~~~FVDlGCGNGLLV~IL~~E-Gy~G~GiD~R 89 (112)
T PF07757_consen 58 KFQGFVDLGCGNGLLVYILNSE-GYPGWGIDAR 89 (112)
T ss_pred CCCceEEccCCchHHHHHHHhC-CCCccccccc
Confidence 4668999999999999988887 7778888873
No 314
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=93.59 E-value=0.35 Score=42.72 Aligned_cols=119 Identities=15% Similarity=0.208 Sum_probs=74.5
Q ss_pred HHHHHHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEE
Q 016921 137 AQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQV 214 (380)
Q Consensus 137 ~~~~~~~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~--~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~ 214 (380)
.+.++...++- ++.+...+|+.+||-+|.++|.....+.+-. ..-|++++.|...-......+++. .||.-+.
T Consensus 137 frSKLAA~I~g--GvdnihikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkR---tNiiPIi 211 (317)
T KOG1596|consen 137 FRSKLAAGILG--GVDNIHIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKR---TNIIPII 211 (317)
T ss_pred HHHHHHHHhhc--CccceeecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhcc---CCceeee
Confidence 33344444442 2334445679999999999999998888866 357999998875433322222222 4777788
Q ss_pred cCCCCCC---CCCCCccEEEeccccCCCCCHHH-HHHHHHHhcCCCcEEEEEe
Q 016921 215 GDALQQP---FPDGQFDLVWSMESGEHMPDKSK-FVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 215 ~d~~~~~---~~~~~fD~V~~~~~l~~~~~~~~-~l~~~~r~LkpgG~l~~~~ 263 (380)
-|+.... ..-.-.|+|++.- - -+|... +.-++...||+||.+++..
T Consensus 212 EDArhP~KYRmlVgmVDvIFaDv-a--qpdq~RivaLNA~~FLk~gGhfvisi 261 (317)
T KOG1596|consen 212 EDARHPAKYRMLVGMVDVIFADV-A--QPDQARIVALNAQYFLKNGGHFVISI 261 (317)
T ss_pred ccCCCchheeeeeeeEEEEeccC-C--CchhhhhhhhhhhhhhccCCeEEEEE
Confidence 8887632 1113466665432 1 134333 3447888999999999975
No 315
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=93.55 E-value=0.23 Score=44.76 Aligned_cols=92 Identities=24% Similarity=0.244 Sum_probs=61.4
Q ss_pred CCCEEEEECCCc-ChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-------CCCCCccE
Q 016921 158 RPKNVVDVGCGI-GGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-------FPDGQFDL 229 (380)
Q Consensus 158 ~~~~vLDiGcGt-G~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-------~~~~~fD~ 229 (380)
++.+||-+|+|+ |..+..+++..+.+|++++.++...+.++.. +. ..++ +..... ...+.+|+
T Consensus 134 ~~~~vli~g~~~~G~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~----g~---~~~~--~~~~~~~~~~~~~~~~~~~d~ 204 (271)
T cd05188 134 PGDTVLVLGAGGVGLLAAQLAKAAGARVIVTDRSDEKLELAKEL----GA---DHVI--DYKEEDLEEELRLTGGGGADV 204 (271)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHh----CC---ceec--cCCcCCHHHHHHHhcCCCCCE
Confidence 488999999985 6677777777789999999998877666432 21 1111 111111 12357999
Q ss_pred EEeccccCCCCCHHHHHHHHHHhcCCCcEEEEEec
Q 016921 230 VWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (380)
Q Consensus 230 V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~~ 264 (380)
|+.... . ...+..+.+.|+++|.++....
T Consensus 205 vi~~~~-----~-~~~~~~~~~~l~~~G~~v~~~~ 233 (271)
T cd05188 205 VIDAVG-----G-PETLAQALRLLRPGGRIVVVGG 233 (271)
T ss_pred EEECCC-----C-HHHHHHHHHhcccCCEEEEEcc
Confidence 885422 1 1457788899999999887653
No 316
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=93.36 E-value=0.31 Score=38.86 Aligned_cols=86 Identities=21% Similarity=0.167 Sum_probs=60.8
Q ss_pred CcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC-----C-CCCCCccEEEeccccCCCCC
Q 016921 168 GIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ-----P-FPDGQFDLVWSMESGEHMPD 241 (380)
Q Consensus 168 GtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-----~-~~~~~fD~V~~~~~l~~~~~ 241 (380)
|.|..+..+++..|++|+++|.++.-++.+++ .|. ..++..+-.++ . .+...+|+|+-.-.
T Consensus 1 ~vG~~a~q~ak~~G~~vi~~~~~~~k~~~~~~----~Ga---~~~~~~~~~~~~~~i~~~~~~~~~d~vid~~g------ 67 (130)
T PF00107_consen 1 GVGLMAIQLAKAMGAKVIATDRSEEKLELAKE----LGA---DHVIDYSDDDFVEQIRELTGGRGVDVVIDCVG------ 67 (130)
T ss_dssp HHHHHHHHHHHHTTSEEEEEESSHHHHHHHHH----TTE---SEEEETTTSSHHHHHHHHTTTSSEEEEEESSS------
T ss_pred ChHHHHHHHHHHcCCEEEEEECCHHHHHHHHh----hcc---cccccccccccccccccccccccceEEEEecC------
Confidence 46888999999889999999999998888775 231 22232222211 1 23357999875432
Q ss_pred HHHHHHHHHHhcCCCcEEEEEeccC
Q 016921 242 KSKFVSELARVTAPAGTIIIVTWCH 266 (380)
Q Consensus 242 ~~~~l~~~~r~LkpgG~l~~~~~~~ 266 (380)
....++....+|+++|.+++.....
T Consensus 68 ~~~~~~~~~~~l~~~G~~v~vg~~~ 92 (130)
T PF00107_consen 68 SGDTLQEAIKLLRPGGRIVVVGVYG 92 (130)
T ss_dssp SHHHHHHHHHHEEEEEEEEEESSTS
T ss_pred cHHHHHHHHHHhccCCEEEEEEccC
Confidence 2578999999999999999987543
No 317
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=93.31 E-value=0.025 Score=43.65 Aligned_cols=83 Identities=11% Similarity=0.269 Sum_probs=43.3
Q ss_pred CccEEEeccccCCCC----C--HHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCH
Q 016921 226 QFDLVWSMESGEHMP----D--KSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCST 299 (380)
Q Consensus 226 ~fD~V~~~~~l~~~~----~--~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (380)
.||+|+|..+.-++. | ...+++.+++.|+|||.+++---.+.... ....... .+........ ..+
T Consensus 1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilEpQ~w~sY~-~~~~~~~----~~~~n~~~i~----lrP 71 (110)
T PF06859_consen 1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILILEPQPWKSYK-KAKRLSE----EIRENYKSIK----LRP 71 (110)
T ss_dssp -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE---HHHHH-TTTTS-H----HHHHHHHH--------G
T ss_pred CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEeCCCcHHHH-HHhhhhH----HHHhHHhceE----ECh
Confidence 489999988876652 2 35799999999999999999532111100 0011111 1222222222 245
Q ss_pred HHHHHHHHh--CCCcEEEEE
Q 016921 300 ADYVKLLQS--LSLEDIKAE 317 (380)
Q Consensus 300 ~~~~~ll~~--aGf~~v~~~ 317 (380)
+.+.+.|.+ .||..++..
T Consensus 72 ~~F~~~L~~~evGF~~~e~~ 91 (110)
T PF06859_consen 72 DQFEDYLLEPEVGFSSVEEL 91 (110)
T ss_dssp GGHHHHHTSTTT---EEEEE
T ss_pred HHHHHHHHhcccceEEEEEc
Confidence 678888877 599877643
No 318
>PTZ00357 methyltransferase; Provisional
Probab=93.29 E-value=0.53 Score=47.82 Aligned_cols=98 Identities=16% Similarity=0.119 Sum_probs=67.8
Q ss_pred CEEEEECCCcChHHHHHHHHc-----CCEEEEEeCCHHHHHHHHHHH-HHcCC-------CCCeEEEEcCCCCCCCCC--
Q 016921 160 KNVVDVGCGIGGSSRYLAKKF-----GAKCQGITLSPVQAQRANALA-AARGL-------ADKVSFQVGDALQQPFPD-- 224 (380)
Q Consensus 160 ~~vLDiGcGtG~~~~~l~~~~-----~~~v~giD~s~~~~~~a~~~~-~~~~~-------~~~v~~~~~d~~~~~~~~-- 224 (380)
..|+-+|+|-|-+.....+.. ..+|++|+-++........+. ....+ .++|+++..|+..+..+.
T Consensus 702 vVImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~ 781 (1072)
T PTZ00357 702 LHLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAEN 781 (1072)
T ss_pred EEEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCccccccccccc
Confidence 468999999999876665543 358999999966544444442 21223 246999999999874321
Q ss_pred ---------CCccEEEeccccCCCCCH---HHHHHHHHHhcCC----CcE
Q 016921 225 ---------GQFDLVWSMESGEHMPDK---SKFVSELARVTAP----AGT 258 (380)
Q Consensus 225 ---------~~fD~V~~~~~l~~~~~~---~~~l~~~~r~Lkp----gG~ 258 (380)
+++|+||+ ..|.-+.|- .+.|..+.+.||+ +|+
T Consensus 782 ~s~~~P~~~gKaDIVVS-ELLGSFGDNELSPECLDGaQrfLKdiqhsdGI 830 (1072)
T PTZ00357 782 GSLTLPADFGLCDLIVS-ELLGSLGDNELSPECLEAFHAQLEDIQLSRGI 830 (1072)
T ss_pred ccccccccccccceehH-hhhcccccccCCHHHHHHHHHhhhhhcccccc
Confidence 37998875 555555543 5788888888887 776
No 319
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=93.28 E-value=0.8 Score=44.54 Aligned_cols=100 Identities=16% Similarity=0.159 Sum_probs=65.4
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEECCCc-ChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCC
Q 016921 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGI-GGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ 219 (380)
Q Consensus 141 ~~~~ll~~~~~~~~~~~~~~~vLDiGcGt-G~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 219 (380)
.++.+++..++. .++.+|+=+|+|. |......++..|++|+++|.++.-++.|+. .| .... +..+
T Consensus 188 ~~~~i~r~t~~~----l~GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~R~~~A~~----~G----~~~~--~~~e 253 (413)
T cd00401 188 LIDGIKRATDVM----IAGKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPICALQAAM----EG----YEVM--TMEE 253 (413)
T ss_pred hHHHHHHhcCCC----CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECChhhHHHHHh----cC----CEEc--cHHH
Confidence 445555554432 2589999999994 766676777668999999999987776654 23 2211 1111
Q ss_pred CCCCCCCccEEEeccccCCCCCHHHHHHH-HHHhcCCCcEEEEEe
Q 016921 220 QPFPDGQFDLVWSMESGEHMPDKSKFVSE-LARVTAPAGTIIIVT 263 (380)
Q Consensus 220 ~~~~~~~fD~V~~~~~l~~~~~~~~~l~~-~~r~LkpgG~l~~~~ 263 (380)
. . ...|+|+.... .. .++.. ..+.+|+||+++...
T Consensus 254 ~-v--~~aDVVI~atG-----~~-~~i~~~~l~~mk~GgilvnvG 289 (413)
T cd00401 254 A-V--KEGDIFVTTTG-----NK-DIITGEHFEQMKDGAIVCNIG 289 (413)
T ss_pred H-H--cCCCEEEECCC-----CH-HHHHHHHHhcCCCCcEEEEeC
Confidence 1 1 35798886432 23 34554 589999999998765
No 320
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=93.16 E-value=0.61 Score=44.39 Aligned_cols=91 Identities=21% Similarity=0.317 Sum_probs=59.7
Q ss_pred CCCEEEEECCC-cChHHHHHHHHcCCEEEEEeC---CHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC----CCCCCccE
Q 016921 158 RPKNVVDVGCG-IGGSSRYLAKKFGAKCQGITL---SPVQAQRANALAAARGLADKVSFQVGDALQQP----FPDGQFDL 229 (380)
Q Consensus 158 ~~~~vLDiGcG-tG~~~~~l~~~~~~~v~giD~---s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~----~~~~~fD~ 229 (380)
++.+||=+|+| .|..+..+++..+++|++++. ++.-++.+++ .|. .++ +..+.. ...+.+|+
T Consensus 172 ~g~~vlI~G~G~vG~~a~q~ak~~G~~vi~~~~~~~~~~~~~~~~~----~Ga----~~v--~~~~~~~~~~~~~~~~d~ 241 (355)
T cd08230 172 NPRRALVLGAGPIGLLAALLLRLRGFEVYVLNRRDPPDPKADIVEE----LGA----TYV--NSSKTPVAEVKLVGEFDL 241 (355)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHH----cCC----EEe--cCCccchhhhhhcCCCCE
Confidence 47899999987 477777788877889999987 5666665543 332 222 111111 01246888
Q ss_pred EEeccccCCCCCHHHHHHHHHHhcCCCcEEEEEec
Q 016921 230 VWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (380)
Q Consensus 230 V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~~ 264 (380)
|+-... . ...+.++.+.|++||.+++...
T Consensus 242 vid~~g-----~-~~~~~~~~~~l~~~G~~v~~G~ 270 (355)
T cd08230 242 IIEATG-----V-PPLAFEALPALAPNGVVILFGV 270 (355)
T ss_pred EEECcC-----C-HHHHHHHHHHccCCcEEEEEec
Confidence 875432 1 2467889999999999887654
No 321
>KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis]
Probab=93.14 E-value=0.34 Score=46.96 Aligned_cols=107 Identities=12% Similarity=0.075 Sum_probs=66.8
Q ss_pred CCEEEEECCCcCh--HHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCC--CCCCC-CCCccEEEe
Q 016921 159 PKNVVDVGCGIGG--SSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDAL--QQPFP-DGQFDLVWS 232 (380)
Q Consensus 159 ~~~vLDiGcGtG~--~~~~l~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~--~~~~~-~~~fD~V~~ 232 (380)
+..++|+|.|.|. ++....... ...++.||.+..|+...........-...+.+...-+. .+|.. .+.||+|++
T Consensus 201 pd~~~dfgsg~~~~~~a~~~lwr~t~~~~~~Vdrs~~~~~~~e~~lr~~~~~g~~~v~~~~~~r~~~pi~~~~~yDlvi~ 280 (491)
T KOG2539|consen 201 PDLLRDFGSGAGNGGWAAVLLWRQTKREYSLVDRSRAMLKQSEKNLRDGSHIGEPIVRKLVFHRQRLPIDIKNGYDLVIC 280 (491)
T ss_pred hHHHHHHHhhcccchhhhhhhcccccceeEeeccchHHHHHHHHhhcChhhcCchhccccchhcccCCCCcccceeeEEe
Confidence 6678888888654 444443332 46799999999999988776643100001111110111 12433 355999999
Q ss_pred ccccCCCCCH---HHHHH-HHHHhcCCCcEEEEEecc
Q 016921 233 MESGEHMPDK---SKFVS-ELARVTAPAGTIIIVTWC 265 (380)
Q Consensus 233 ~~~l~~~~~~---~~~l~-~~~r~LkpgG~l~~~~~~ 265 (380)
.+.++++... ..+.+ -..+..++|+.+++.+-+
T Consensus 281 ah~l~~~~s~~~R~~v~~s~~r~~~r~g~~lViIe~g 317 (491)
T KOG2539|consen 281 AHKLHELGSKFSRLDVPESLWRKTDRSGYFLVIIEKG 317 (491)
T ss_pred eeeeeccCCchhhhhhhHHHHHhccCCCceEEEEecC
Confidence 9999998653 33333 455667899999998854
No 322
>KOG2918 consensus Carboxymethyl transferase [Posttranslational modification, protein turnover, chaperones]
Probab=92.93 E-value=2.8 Score=38.66 Aligned_cols=182 Identities=12% Similarity=0.087 Sum_probs=90.8
Q ss_pred ccccccccCCCCCCCcccHHHHHHHHHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHc---CCEEEEEeCCHH
Q 016921 116 DHMHHGFYEPDSSVSVSDHRAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPV 192 (380)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~---~~~v~giD~s~~ 192 (380)
+.++.|||. .-.+....+...+.... ....|+.+|||.-.....|...+ ...++=||.++.
T Consensus 61 P~inRGy~~---------R~~aI~~~v~~Fl~~~~-------~~~qivnLGcG~D~l~frL~s~~~~~~~~fievDfp~~ 124 (335)
T KOG2918|consen 61 PEINRGYWA---------RTMAIRHAVRAFLEQTD-------GKKQIVNLGAGFDTLYFRLLSSGELDRVKFIEVDFPEV 124 (335)
T ss_pred ceecchhhH---------HHHHHHHHHHHHHHhcC-------CceEEEEcCCCccchhhhhhccCCCCcceEEEecCcHH
Confidence 345566664 22333445555555522 26789999999999888888765 245666666655
Q ss_pred HHHHHHHHHHHcCC---------------------CCCeEEEEcCCCCCC----------CCCCCccEEEeccccCCCC-
Q 016921 193 QAQRANALAAARGL---------------------ADKVSFQVGDALQQP----------FPDGQFDLVWSMESGEHMP- 240 (380)
Q Consensus 193 ~~~~a~~~~~~~~~---------------------~~~v~~~~~d~~~~~----------~~~~~fD~V~~~~~l~~~~- 240 (380)
....... ..+..+ .++-..+-.|+.++. ...+-.-++++-.++.+++
T Consensus 125 ~~rKi~i-k~~~~~s~~l~~~~~eD~~~~s~~~l~s~~Y~~~g~DLrdl~ele~kL~~c~~d~~lpTi~iaEcvLvYM~p 203 (335)
T KOG2918|consen 125 VERKISI-KRKPELSSILLGLHDEDVVDLSGTDLHSGRYHLIGCDLRDLNELEEKLKKCGLDTNLPTIFIAECVLVYMEP 203 (335)
T ss_pred HHHHHhh-cccCchhhhhhccccccccccCcceeccCceeeeccchhhhHHHHHHHHhccCCcCcceeehhhhhheeccH
Confidence 4433311 100000 011122222332210 0011122233334455552
Q ss_pred C-HHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchHHHHHHHHH-hhccCCCCCCCHHHHHHHHHhCCCcEEEEEe
Q 016921 241 D-KSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKI-CDAYYLPAWCSTADYVKLLQSLSLEDIKAED 318 (380)
Q Consensus 241 ~-~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ll~~aGf~~v~~~~ 318 (380)
+ -..+++.+...... +.+++.+... ....+...+...+... ....++..+.+.+..++-+.++||+-+.+.+
T Consensus 204 e~S~~Li~w~~~~F~~-a~fv~YEQi~-----~~D~Fg~vM~~nlk~r~~~L~gle~y~s~Esq~~Rf~~~Gw~~v~a~D 277 (335)
T KOG2918|consen 204 EESANLIKWAASKFEN-AHFVNYEQIN-----PNDRFGKVMLANLKRRGCPLHGLETYNSIESQRSRFLKAGWEYVIAVD 277 (335)
T ss_pred HHHHHHHHHHHHhCCc-ccEEEEeccC-----CCChHHHHHHHHHHhcCCCCchhhhcccHHHHHHHHHhcCCceeehhh
Confidence 2 23456666665544 4444444322 1123344343333322 1122333567899999999999999887654
Q ss_pred cC
Q 016921 319 WS 320 (380)
Q Consensus 319 ~~ 320 (380)
..
T Consensus 278 m~ 279 (335)
T KOG2918|consen 278 MN 279 (335)
T ss_pred HH
Confidence 43
No 323
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=92.77 E-value=0.33 Score=44.66 Aligned_cols=66 Identities=23% Similarity=0.146 Sum_probs=49.1
Q ss_pred EEEEECCCcChHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCC--CCCccEEEecc
Q 016921 161 NVVDVGCGIGGSSRYLAKKFGA-KCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFP--DGQFDLVWSME 234 (380)
Q Consensus 161 ~vLDiGcGtG~~~~~l~~~~~~-~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~--~~~fD~V~~~~ 234 (380)
+|+|+-||.|.+...+.+. |. .+.++|+++...+..+.+.. .. ++.+|+.++... ...+|+|+...
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~-G~~~v~a~e~~~~a~~~~~~N~~------~~-~~~~Di~~~~~~~~~~~~D~l~~gp 70 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKA-GFEIVAANEIDKSAAETYEANFP------NK-LIEGDITKIDEKDFIPDIDLLTGGF 70 (275)
T ss_pred cEEEEccCcchHHHHHHHc-CCEEEEEEeCCHHHHHHHHHhCC------CC-CccCccccCchhhcCCCCCEEEeCC
Confidence 6999999999998888775 44 46789999999888776552 12 566777776422 35799998754
No 324
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=92.39 E-value=0.91 Score=42.72 Aligned_cols=93 Identities=25% Similarity=0.296 Sum_probs=60.3
Q ss_pred CCCEEEEECCCc-ChHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcC---CCCCCCCCCCccEEEe
Q 016921 158 RPKNVVDVGCGI-GGSSRYLAKKFGA-KCQGITLSPVQAQRANALAAARGLADKVSFQVGD---ALQQPFPDGQFDLVWS 232 (380)
Q Consensus 158 ~~~~vLDiGcGt-G~~~~~l~~~~~~-~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d---~~~~~~~~~~fD~V~~ 232 (380)
++.+||-.|+|. |..+..+++..|. .+++++.++...+.+++ .+. . .++..+ ........+.+|+|+.
T Consensus 165 ~~~~VLI~g~g~vG~~~~~lak~~G~~~v~~~~~s~~~~~~~~~----~g~-~--~vi~~~~~~~~~~~~~~~~vd~vld 237 (339)
T cd08232 165 AGKRVLVTGAGPIGALVVAAARRAGAAEIVATDLADAPLAVARA----MGA-D--ETVNLARDPLAAYAADKGDFDVVFE 237 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHH----cCC-C--EEEcCCchhhhhhhccCCCccEEEE
Confidence 478898888875 6677778887777 79999999888775544 222 1 122111 1111111245898886
Q ss_pred ccccCCCCCHHHHHHHHHHhcCCCcEEEEEe
Q 016921 233 MESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 233 ~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~ 263 (380)
.... ...++.+.+.|+++|+++...
T Consensus 238 ~~g~------~~~~~~~~~~L~~~G~~v~~g 262 (339)
T cd08232 238 ASGA------PAALASALRVVRPGGTVVQVG 262 (339)
T ss_pred CCCC------HHHHHHHHHHHhcCCEEEEEe
Confidence 4321 346788999999999988754
No 325
>KOG1227 consensus Putative methyltransferase [General function prediction only]
Probab=91.89 E-value=0.11 Score=47.22 Aligned_cols=102 Identities=19% Similarity=0.171 Sum_probs=73.1
Q ss_pred CCCEEEEECCCcChHHH-HHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEEecccc
Q 016921 158 RPKNVVDVGCGIGGSSR-YLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESG 236 (380)
Q Consensus 158 ~~~~vLDiGcGtG~~~~-~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l 236 (380)
.+..|+|+=.|-|.+++ .+.......|+++|.+|..++..++.+..+++..+..++.+|-... -++...|.|...
T Consensus 194 ~~eviVDLYAGIGYFTlpflV~agAk~V~A~EwNp~svEaLrR~~~~N~V~~r~~i~~gd~R~~-~~~~~AdrVnLG--- 269 (351)
T KOG1227|consen 194 DGEVIVDLYAGIGYFTLPFLVTAGAKTVFACEWNPWSVEALRRNAEANNVMDRCRITEGDNRNP-KPRLRADRVNLG--- 269 (351)
T ss_pred ccchhhhhhcccceEEeehhhccCccEEEEEecCHHHHHHHHHHHHhcchHHHHHhhhcccccc-Cccccchheeec---
Confidence 36789999999999998 5555435689999999999999999988887766677777776554 356788888753
Q ss_pred CCCCCHHHHHHHHHHhcCCCc--EEEEEec
Q 016921 237 EHMPDKSKFVSELARVTAPAG--TIIIVTW 264 (380)
Q Consensus 237 ~~~~~~~~~l~~~~r~LkpgG--~l~~~~~ 264 (380)
-+|.-++---.+..+|||.| .+-+.+.
T Consensus 270 -LlPSse~~W~~A~k~Lk~eggsilHIHen 298 (351)
T KOG1227|consen 270 -LLPSSEQGWPTAIKALKPEGGSILHIHEN 298 (351)
T ss_pred -cccccccchHHHHHHhhhcCCcEEEEecc
Confidence 23443444445666777754 4445443
No 326
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=91.42 E-value=1 Score=42.91 Aligned_cols=94 Identities=19% Similarity=0.182 Sum_probs=60.6
Q ss_pred CCCEEEEECCC-cChHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC------CCCCCCccE
Q 016921 158 RPKNVVDVGCG-IGGSSRYLAKKFGA-KCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ------PFPDGQFDL 229 (380)
Q Consensus 158 ~~~~vLDiGcG-tG~~~~~l~~~~~~-~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~------~~~~~~fD~ 229 (380)
++.+||=.|+| .|..+..+++..|+ +|+++|.++...+.+++ .|. -.++...-.+. ......+|+
T Consensus 176 ~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~~----~Ga---~~~i~~~~~~~~~~i~~~~~~~g~d~ 248 (358)
T TIGR03451 176 RGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWARE----FGA---THTVNSSGTDPVEAIRALTGGFGADV 248 (358)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH----cCC---ceEEcCCCcCHHHHHHHHhCCCCCCE
Confidence 48899999886 46677777887777 59999999988887754 232 11121111110 012245898
Q ss_pred EEeccccCCCCCHHHHHHHHHHhcCCCcEEEEEec
Q 016921 230 VWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (380)
Q Consensus 230 V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~~ 264 (380)
|+-.-. . ...++.+.+.+++||++++...
T Consensus 249 vid~~g-----~-~~~~~~~~~~~~~~G~iv~~G~ 277 (358)
T TIGR03451 249 VIDAVG-----R-PETYKQAFYARDLAGTVVLVGV 277 (358)
T ss_pred EEECCC-----C-HHHHHHHHHHhccCCEEEEECC
Confidence 874321 2 2467788899999999988653
No 327
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=91.40 E-value=1.2 Score=41.54 Aligned_cols=86 Identities=20% Similarity=0.296 Sum_probs=57.1
Q ss_pred CCEEEEECCC-cChHHHHHHHHcCCE-EEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEEecccc
Q 016921 159 PKNVVDVGCG-IGGSSRYLAKKFGAK-CQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESG 236 (380)
Q Consensus 159 ~~~vLDiGcG-tG~~~~~l~~~~~~~-v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l 236 (380)
+.+||=+||| .|.++..+++..|++ |+++|.++..++.+.+. . + .|..+. ....+|+|+-...
T Consensus 145 ~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~----~------~--i~~~~~--~~~g~Dvvid~~G- 209 (308)
T TIGR01202 145 VLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGY----E------V--LDPEKD--PRRDYRAIYDASG- 209 (308)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhc----c------c--cChhhc--cCCCCCEEEECCC-
Confidence 6678888987 577778888877765 67789888776655431 1 1 111111 1346898875422
Q ss_pred CCCCCHHHHHHHHHHhcCCCcEEEEEec
Q 016921 237 EHMPDKSKFVSELARVTAPAGTIIIVTW 264 (380)
Q Consensus 237 ~~~~~~~~~l~~~~r~LkpgG~l~~~~~ 264 (380)
. ...++.+.+.|++||++++.-.
T Consensus 210 ----~-~~~~~~~~~~l~~~G~iv~~G~ 232 (308)
T TIGR01202 210 ----D-PSLIDTLVRRLAKGGEIVLAGF 232 (308)
T ss_pred ----C-HHHHHHHHHhhhcCcEEEEEee
Confidence 1 3467889999999999998754
No 328
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=91.01 E-value=2.1 Score=40.56 Aligned_cols=92 Identities=15% Similarity=0.173 Sum_probs=59.0
Q ss_pred CCCEEEEECCC-cChHHHHHHHH-c-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEEecc
Q 016921 158 RPKNVVDVGCG-IGGSSRYLAKK-F-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSME 234 (380)
Q Consensus 158 ~~~~vLDiGcG-tG~~~~~l~~~-~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~ 234 (380)
++.+||=+||| .|..+..++++ . +.+|+++|.++.-++.+++ .+ .. ... + ++. ....+|+|+-.-
T Consensus 163 ~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~----~~---~~-~~~-~--~~~-~~~g~d~viD~~ 230 (341)
T cd08237 163 DRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSF----AD---ET-YLI-D--DIP-EDLAVDHAFECV 230 (341)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh----cC---ce-eeh-h--hhh-hccCCcEEEECC
Confidence 48899999987 45566666665 3 4689999999988777754 11 11 111 1 111 112488887432
Q ss_pred ccCCCCCHHHHHHHHHHhcCCCcEEEEEec
Q 016921 235 SGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (380)
Q Consensus 235 ~l~~~~~~~~~l~~~~r~LkpgG~l~~~~~ 264 (380)
. . ......+....+.|++||++++...
T Consensus 231 G--~-~~~~~~~~~~~~~l~~~G~iv~~G~ 257 (341)
T cd08237 231 G--G-RGSQSAINQIIDYIRPQGTIGLMGV 257 (341)
T ss_pred C--C-CccHHHHHHHHHhCcCCcEEEEEee
Confidence 2 1 0124578889999999999988754
No 329
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=90.64 E-value=1.4 Score=42.30 Aligned_cols=94 Identities=19% Similarity=0.205 Sum_probs=60.5
Q ss_pred CCCEEEEECCC-cChHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC-----CCCCCCccEE
Q 016921 158 RPKNVVDVGCG-IGGSSRYLAKKFGA-KCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ-----PFPDGQFDLV 230 (380)
Q Consensus 158 ~~~~vLDiGcG-tG~~~~~l~~~~~~-~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-----~~~~~~fD~V 230 (380)
++.+||=+|+| .|..+..+++..|+ +|+++|.++..++.+++ .|. ..++..+-.+. ....+.+|+|
T Consensus 191 ~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~----~Ga---~~~i~~~~~~~~~~i~~~~~~g~d~v 263 (371)
T cd08281 191 PGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALARE----LGA---TATVNAGDPNAVEQVRELTGGGVDYA 263 (371)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHH----cCC---ceEeCCCchhHHHHHHHHhCCCCCEE
Confidence 47888889987 46677777777787 69999999998887764 232 11121111111 0112368888
Q ss_pred EeccccCCCCCHHHHHHHHHHhcCCCcEEEEEec
Q 016921 231 WSMESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (380)
Q Consensus 231 ~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~~ 264 (380)
+-... . ...+..+.+.|++||.+++...
T Consensus 264 id~~G-----~-~~~~~~~~~~l~~~G~iv~~G~ 291 (371)
T cd08281 264 FEMAG-----S-VPALETAYEITRRGGTTVTAGL 291 (371)
T ss_pred EECCC-----C-hHHHHHHHHHHhcCCEEEEEcc
Confidence 74321 1 3567888899999999887653
No 330
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=90.53 E-value=0.68 Score=40.32 Aligned_cols=44 Identities=16% Similarity=0.111 Sum_probs=33.8
Q ss_pred CCCEEEEECCCcChHHHHHHHHcC---CEEEEEeCCHHHHHHHHHHH
Q 016921 158 RPKNVVDVGCGIGGSSRYLAKKFG---AKCQGITLSPVQAQRANALA 201 (380)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~~---~~v~giD~s~~~~~~a~~~~ 201 (380)
.+.++-|-.||.|.+.-.+.-..+ ..|+|.|+++++++.|++++
T Consensus 51 ~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL 97 (246)
T PF11599_consen 51 GPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNL 97 (246)
T ss_dssp S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHH
T ss_pred CCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhh
Confidence 377999999999998877655432 57999999999999998865
No 331
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=90.32 E-value=0.92 Score=42.73 Aligned_cols=94 Identities=20% Similarity=0.228 Sum_probs=59.5
Q ss_pred CCCEEEEECCC-cChHHHHHHHHcCCE-EEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCC---CC-C-CCCCCccEE
Q 016921 158 RPKNVVDVGCG-IGGSSRYLAKKFGAK-CQGITLSPVQAQRANALAAARGLADKVSFQVGDAL---QQ-P-FPDGQFDLV 230 (380)
Q Consensus 158 ~~~~vLDiGcG-tG~~~~~l~~~~~~~-v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~---~~-~-~~~~~fD~V 230 (380)
++.+||=+|+| .|..+..+++..|++ |+++|.+++..+.+++ .|.. .++...-. .+ . .....+|+|
T Consensus 163 ~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~~~----~ga~---~~i~~~~~~~~~~~~~~~~~~~d~v 235 (339)
T cd08239 163 GRDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPERLELAKA----LGAD---FVINSGQDDVQEIRELTSGAGADVA 235 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH----hCCC---EEEcCCcchHHHHHHHhCCCCCCEE
Confidence 38889888876 456666777777877 9999999988777654 2321 11111100 01 0 123468988
Q ss_pred EeccccCCCCCHHHHHHHHHHhcCCCcEEEEEec
Q 016921 231 WSMESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (380)
Q Consensus 231 ~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~~ 264 (380)
+-... ....+..+.+.|+++|++++...
T Consensus 236 id~~g------~~~~~~~~~~~l~~~G~~v~~g~ 263 (339)
T cd08239 236 IECSG------NTAARRLALEAVRPWGRLVLVGE 263 (339)
T ss_pred EECCC------CHHHHHHHHHHhhcCCEEEEEcC
Confidence 74321 13456778899999999987653
No 332
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=90.30 E-value=6 Score=34.84 Aligned_cols=102 Identities=17% Similarity=0.115 Sum_probs=63.0
Q ss_pred CCEEEEECCCcChHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-----C-----CCC
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-----F-----PDG 225 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~---~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~-----~~~ 225 (380)
+.+||=.|++ |.++..+++.+ |.+|++++.++...+...+..... .++.++.+|+.+.. + .-+
T Consensus 5 ~~~vlItGa~-g~iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 80 (238)
T PRK05786 5 GKKVAIIGVS-EGLGYAVAYFALKEGAQVCINSRNENKLKRMKKTLSKY---GNIHYVVGDVSSTESARNVIEKAAKVLN 80 (238)
T ss_pred CcEEEEECCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc---CCeEEEECCCCCHHHHHHHHHHHHHHhC
Confidence 6788888875 55555555544 889999999987666554444332 25788889987632 0 013
Q ss_pred CccEEEeccccCCCC---C--------------HHHHHHHHHHhcCCCcEEEEEec
Q 016921 226 QFDLVWSMESGEHMP---D--------------KSKFVSELARVTAPAGTIIIVTW 264 (380)
Q Consensus 226 ~fD~V~~~~~l~~~~---~--------------~~~~l~~~~r~LkpgG~l~~~~~ 264 (380)
.+|.++......... + ...+++.+...++++|.+++...
T Consensus 81 ~id~ii~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~ss 136 (238)
T PRK05786 81 AIDGLVVTVGGYVEDTVEEFSGLEEMLTNHIKIPLYAVNASLRFLKEGSSIVLVSS 136 (238)
T ss_pred CCCEEEEcCCCcCCCchHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCEEEEEec
Confidence 568777655432211 1 11245666677788888777653
No 333
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=90.20 E-value=3.1 Score=38.90 Aligned_cols=94 Identities=18% Similarity=0.112 Sum_probs=61.1
Q ss_pred CCCEEEEECCC-cChHHHHHHHHcCCE-EEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC----CCCCCCccEEE
Q 016921 158 RPKNVVDVGCG-IGGSSRYLAKKFGAK-CQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ----PFPDGQFDLVW 231 (380)
Q Consensus 158 ~~~~vLDiGcG-tG~~~~~l~~~~~~~-v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~----~~~~~~fD~V~ 231 (380)
++.+||-+|+| .|..+..+++..|.+ +++++.+++..+.+++ .+.. .++..+-.+. ....+.+|+|+
T Consensus 159 ~g~~vlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~----~g~~---~~~~~~~~~~~~~~~~~~~~vd~v~ 231 (334)
T cd08234 159 PGDSVLVFGAGPIGLLLAQLLKLNGASRVTVAEPNEEKLELAKK----LGAT---ETVDPSREDPEAQKEDNPYGFDVVI 231 (334)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHH----hCCe---EEecCCCCCHHHHHHhcCCCCcEEE
Confidence 47899999876 366777777777776 8999999888776643 2321 2222111111 11245689988
Q ss_pred eccccCCCCCHHHHHHHHHHhcCCCcEEEEEec
Q 016921 232 SMESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (380)
Q Consensus 232 ~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~~ 264 (380)
.... ....+.++.+.|+++|+++....
T Consensus 232 ~~~~------~~~~~~~~~~~l~~~G~~v~~g~ 258 (334)
T cd08234 232 EATG------VPKTLEQAIEYARRGGTVLVFGV 258 (334)
T ss_pred ECCC------ChHHHHHHHHHHhcCCEEEEEec
Confidence 5421 13578888999999999887654
No 334
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=89.90 E-value=5 Score=38.08 Aligned_cols=94 Identities=14% Similarity=0.073 Sum_probs=61.9
Q ss_pred CCCEEEEECC--CcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEc----CCCC-C-CCCCCCccE
Q 016921 158 RPKNVVDVGC--GIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVG----DALQ-Q-PFPDGQFDL 229 (380)
Q Consensus 158 ~~~~vLDiGc--GtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~----d~~~-~-~~~~~~fD~ 229 (380)
++.+||=.|+ |.|..+..+++..|++|++++.++...+.+++. .|.. .++.. +..+ + ....+.+|+
T Consensus 158 ~g~~VlV~GaaG~vG~~aiqlAk~~G~~Vi~~~~~~~k~~~~~~~---lGa~---~vi~~~~~~~~~~~i~~~~~~gvD~ 231 (348)
T PLN03154 158 KGDSVFVSAASGAVGQLVGQLAKLHGCYVVGSAGSSQKVDLLKNK---LGFD---EAFNYKEEPDLDAALKRYFPEGIDI 231 (348)
T ss_pred CCCEEEEecCccHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHh---cCCC---EEEECCCcccHHHHHHHHCCCCcEE
Confidence 4889999987 378888888888899999999998877766532 2321 12211 1110 0 011246888
Q ss_pred EEeccccCCCCCHHHHHHHHHHhcCCCcEEEEEec
Q 016921 230 VWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (380)
Q Consensus 230 V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~~ 264 (380)
|+-... ...+..+.+.|++||++++...
T Consensus 232 v~d~vG-------~~~~~~~~~~l~~~G~iv~~G~ 259 (348)
T PLN03154 232 YFDNVG-------GDMLDAALLNMKIHGRIAVCGM 259 (348)
T ss_pred EEECCC-------HHHHHHHHHHhccCCEEEEECc
Confidence 874321 2467889999999999987653
No 335
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=89.89 E-value=3.5 Score=37.37 Aligned_cols=92 Identities=25% Similarity=0.314 Sum_probs=59.9
Q ss_pred CCCEEEEECCCc-ChHHHHHHHHcCCE-EEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEEeccc
Q 016921 158 RPKNVVDVGCGI-GGSSRYLAKKFGAK-CQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMES 235 (380)
Q Consensus 158 ~~~~vLDiGcGt-G~~~~~l~~~~~~~-v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~ 235 (380)
++.+||=.|+|. |..+..+++..+.+ |++++.+++..+.+++. |....+ ... .........+|+|+....
T Consensus 97 ~g~~vlI~g~g~vg~~~i~~a~~~g~~~vi~~~~~~~~~~~~~~~----g~~~~~--~~~--~~~~~~~~~~d~vl~~~~ 168 (277)
T cd08255 97 LGERVAVVGLGLVGLLAAQLAKAAGAREVVGVDPDAARRELAEAL----GPADPV--AAD--TADEIGGRGADVVIEASG 168 (277)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCcEEEECCCHHHHHHHHHc----CCCccc--ccc--chhhhcCCCCCEEEEccC
Confidence 488898888874 77777788877777 99999999887766542 211111 110 000112356898875321
Q ss_pred cCCCCCHHHHHHHHHHhcCCCcEEEEEe
Q 016921 236 GEHMPDKSKFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 236 l~~~~~~~~~l~~~~r~LkpgG~l~~~~ 263 (380)
- ...+....+.|+++|.++...
T Consensus 169 ~------~~~~~~~~~~l~~~g~~~~~g 190 (277)
T cd08255 169 S------PSALETALRLLRDRGRVVLVG 190 (277)
T ss_pred C------hHHHHHHHHHhcCCcEEEEEe
Confidence 1 246788899999999988754
No 336
>PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function.; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A.
Probab=89.74 E-value=0.22 Score=39.73 Aligned_cols=76 Identities=24% Similarity=0.338 Sum_probs=48.5
Q ss_pred eEEEEcCCCCC-CCCCCCccEEEeccccCCCCCH----HHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchHHHHHH
Q 016921 210 VSFQVGDALQQ-PFPDGQFDLVWSMESGEHMPDK----SKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELL 284 (380)
Q Consensus 210 v~~~~~d~~~~-~~~~~~fD~V~~~~~l~~~~~~----~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (380)
+.+..+|+.+. +--...||+|+... +.--.++ ..++++++++++|||.+.-..
T Consensus 33 L~L~~gDa~~~l~~l~~~~Da~ylDg-FsP~~nPelWs~e~~~~l~~~~~~~~~l~Tys--------------------- 90 (124)
T PF05430_consen 33 LTLWFGDAREMLPQLDARFDAWYLDG-FSPAKNPELWSEELFKKLARLSKPGGTLATYS--------------------- 90 (124)
T ss_dssp EEEEES-HHHHHHHB-T-EEEEEE-S-S-TTTSGGGSSHHHHHHHHHHEEEEEEEEES----------------------
T ss_pred EEEEEcHHHHHHHhCcccCCEEEecC-CCCcCCcccCCHHHHHHHHHHhCCCcEEEEee---------------------
Confidence 55667776542 21136899888754 2222233 689999999999999776532
Q ss_pred HHHhhccCCCCCCCHHHHHHHHHhCCCcEEEEEecC
Q 016921 285 KKICDAYYLPAWCSTADYVKLLQSLSLEDIKAEDWS 320 (380)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v~~~~~~ 320 (380)
....++..|+++||.+.....+.
T Consensus 91 -------------~a~~Vr~~L~~aGF~v~~~~g~g 113 (124)
T PF05430_consen 91 -------------SAGAVRRALQQAGFEVEKVPGFG 113 (124)
T ss_dssp --------------BHHHHHHHHHCTEEEEEEE-ST
T ss_pred -------------chHHHHHHHHHcCCEEEEcCCCC
Confidence 23468899999999998877664
No 337
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=89.74 E-value=1.9 Score=39.03 Aligned_cols=102 Identities=18% Similarity=0.168 Sum_probs=68.3
Q ss_pred CCCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCC---CCccEEEec
Q 016921 158 RPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPD---GQFDLVWSM 233 (380)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~---~~fD~V~~~ 233 (380)
.+..|+-+| -.-..+++++-.. ..+|..+|+++..+....+.+.+.|+ .+++.+..|+.+ |+|+ ++||+.+.
T Consensus 152 ~gK~I~vvG-DDDLtsia~aLt~mpk~iaVvDIDERli~fi~k~aee~g~-~~ie~~~~Dlr~-plpe~~~~kFDvfiT- 227 (354)
T COG1568 152 EGKEIFVVG-DDDLTSIALALTGMPKRIAVVDIDERLIKFIEKVAEELGY-NNIEAFVFDLRN-PLPEDLKRKFDVFIT- 227 (354)
T ss_pred CCCeEEEEc-CchhhHHHHHhcCCCceEEEEechHHHHHHHHHHHHHhCc-cchhheeehhcc-cChHHHHhhCCeeec-
Confidence 367899998 3333444444322 67999999999999999999988887 579999999887 4443 68997764
Q ss_pred cccCCCCCHHHHHHHHHHhcCCC---cEEEEEe
Q 016921 234 ESGEHMPDKSKFVSELARVTAPA---GTIIIVT 263 (380)
Q Consensus 234 ~~l~~~~~~~~~l~~~~r~Lkpg---G~l~~~~ 263 (380)
.--+.+.-...++..=...||.. |++.++.
T Consensus 228 DPpeTi~alk~FlgRGI~tLkg~~~aGyfgiT~ 260 (354)
T COG1568 228 DPPETIKALKLFLGRGIATLKGEGCAGYFGITR 260 (354)
T ss_pred CchhhHHHHHHHHhccHHHhcCCCccceEeeee
Confidence 22222222344555555666655 6666653
No 338
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=89.59 E-value=3.8 Score=37.49 Aligned_cols=94 Identities=18% Similarity=0.170 Sum_probs=59.5
Q ss_pred CCCEEEEECCC-cChHHHHHHHHcCCE-EEEEeCCHHHHHHHHHHHHHcCCCCCeEEEE-cCCCC-C-C-CCCCCccEEE
Q 016921 158 RPKNVVDVGCG-IGGSSRYLAKKFGAK-CQGITLSPVQAQRANALAAARGLADKVSFQV-GDALQ-Q-P-FPDGQFDLVW 231 (380)
Q Consensus 158 ~~~~vLDiGcG-tG~~~~~l~~~~~~~-v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~-~d~~~-~-~-~~~~~fD~V~ 231 (380)
++.+||=+|+| .|..+..+++..|++ |+++|.++.-++.+++ .|.. .++. .+... . . .....+|+|+
T Consensus 120 ~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~----~Ga~---~~i~~~~~~~~~~~~~~~~g~d~vi 192 (280)
T TIGR03366 120 KGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALS----FGAT---ALAEPEVLAERQGGLQNGRGVDVAL 192 (280)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH----cCCc---EecCchhhHHHHHHHhCCCCCCEEE
Confidence 47889999886 466667777777775 9999999887777655 2321 1111 01000 0 0 1224588887
Q ss_pred eccccCCCCCHHHHHHHHHHhcCCCcEEEEEec
Q 016921 232 SMESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (380)
Q Consensus 232 ~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~~ 264 (380)
-... ....++.+.+.|+++|++++...
T Consensus 193 d~~G------~~~~~~~~~~~l~~~G~iv~~G~ 219 (280)
T TIGR03366 193 EFSG------ATAAVRACLESLDVGGTAVLAGS 219 (280)
T ss_pred ECCC------ChHHHHHHHHHhcCCCEEEEecc
Confidence 4321 13568889999999999988763
No 339
>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]
Probab=89.53 E-value=0.25 Score=47.24 Aligned_cols=61 Identities=23% Similarity=0.182 Sum_probs=52.7
Q ss_pred CCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCC-eEEEEcCCCC
Q 016921 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADK-VSFQVGDALQ 219 (380)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~-v~~~~~d~~~ 219 (380)
++..|.|+-||.|-++..++.+ ++.|++.|+++++++..+..++.+.+.+. ++.+..|+..
T Consensus 249 ~gevv~D~FaGvGPfa~Pa~kK-~crV~aNDLNpesik~Lk~ni~lNkv~~~~iei~Nmda~~ 310 (495)
T KOG2078|consen 249 PGEVVCDVFAGVGPFALPAAKK-GCRVYANDLNPESIKWLKANIKLNKVDPSAIEIFNMDAKD 310 (495)
T ss_pred CcchhhhhhcCcCccccchhhc-CcEEEecCCCHHHHHHHHHhccccccchhheeeecccHHH
Confidence 5889999999999999999988 79999999999999999998877665444 8888777654
No 340
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=89.15 E-value=5.5 Score=37.14 Aligned_cols=93 Identities=19% Similarity=0.180 Sum_probs=60.3
Q ss_pred CCCEEEEECCC-cChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-CCCCCccEEEeccc
Q 016921 158 RPKNVVDVGCG-IGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-FPDGQFDLVWSMES 235 (380)
Q Consensus 158 ~~~~vLDiGcG-tG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-~~~~~fD~V~~~~~ 235 (380)
++.+||-+|+| .|..+..+++..|.+|++++.++...+.+++ .+. ..++...-.... -..+.+|+++....
T Consensus 162 ~~~~vlI~g~g~iG~~~~~~a~~~G~~v~~~~~~~~~~~~~~~----~g~---~~~~~~~~~~~~~~~~~~~d~vi~~~~ 234 (330)
T cd08245 162 PGERVAVLGIGGLGHLAVQYARAMGFETVAITRSPDKRELARK----LGA---DEVVDSGAELDEQAAAGGADVILVTVV 234 (330)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH----hCC---cEEeccCCcchHHhccCCCCEEEECCC
Confidence 47889999987 6777777777778899999999988777643 121 111111100000 01246898875321
Q ss_pred cCCCCCHHHHHHHHHHhcCCCcEEEEEe
Q 016921 236 GEHMPDKSKFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 236 l~~~~~~~~~l~~~~r~LkpgG~l~~~~ 263 (380)
. ...+..+.+.|+++|.++...
T Consensus 235 -----~-~~~~~~~~~~l~~~G~~i~~~ 256 (330)
T cd08245 235 -----S-GAAAEAALGGLRRGGRIVLVG 256 (330)
T ss_pred -----c-HHHHHHHHHhcccCCEEEEEC
Confidence 1 246788899999999988765
No 341
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=89.14 E-value=0.75 Score=44.22 Aligned_cols=102 Identities=17% Similarity=0.198 Sum_probs=57.8
Q ss_pred CCCEEEEECCC-cChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEEecccc
Q 016921 158 RPKNVVDVGCG-IGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESG 236 (380)
Q Consensus 158 ~~~~vLDiGcG-tG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l 236 (380)
++.+|+=+|+| .|..+...+...|++|+++|.++..++.+.... + ..+.....+...+.-.-..+|+|+..-.+
T Consensus 166 ~~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~~~~~~l~~~~---g--~~v~~~~~~~~~l~~~l~~aDvVI~a~~~ 240 (370)
T TIGR00518 166 EPGDVTIIGGGVVGTNAAKMANGLGATVTILDINIDRLRQLDAEF---G--GRIHTRYSNAYEIEDAVKRADLLIGAVLI 240 (370)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHhc---C--ceeEeccCCHHHHHHHHccCCEEEEcccc
Confidence 36779999998 577777777767889999999987665543322 1 11211111111111001468999865322
Q ss_pred CCCCCHHHHHHHHHHhcCCCcEEEEEec
Q 016921 237 EHMPDKSKFVSELARVTAPAGTIIIVTW 264 (380)
Q Consensus 237 ~~~~~~~~~l~~~~r~LkpgG~l~~~~~ 264 (380)
..-+.+.-+-++..+.++||+.++-.-.
T Consensus 241 ~g~~~p~lit~~~l~~mk~g~vIvDva~ 268 (370)
T TIGR00518 241 PGAKAPKLVSNSLVAQMKPGAVIVDVAI 268 (370)
T ss_pred CCCCCCcCcCHHHHhcCCCCCEEEEEec
Confidence 1111122123566677899988776443
No 342
>KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only]
Probab=89.08 E-value=1.2 Score=44.57 Aligned_cols=91 Identities=18% Similarity=0.244 Sum_probs=59.4
Q ss_pred CCCEEEEECCCcChHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC----C----CCCCCc
Q 016921 158 RPKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ----P----FPDGQF 227 (380)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~--~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~----~----~~~~~f 227 (380)
++..|||+||-.|.|.....+.. +.-|+|+|+-|.- ..+++.-.+.|+... + ....+.
T Consensus 44 ~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~pik------------p~~~c~t~v~dIttd~cr~~l~k~l~t~~a 111 (780)
T KOG1098|consen 44 KAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVPIK------------PIPNCDTLVEDITTDECRSKLRKILKTWKA 111 (780)
T ss_pred ccchheeeccCCcHHHHHHHHhCCCCceEEEeeeeecc------------cCCccchhhhhhhHHHHHHHHHHHHHhCCC
Confidence 47889999999999999988876 6789999997742 224555555555431 1 223445
Q ss_pred cEEEeccccCCCC-----CH-------HHHHHHHHHhcCCCcEEEE
Q 016921 228 DLVWSMESGEHMP-----DK-------SKFVSELARVTAPAGTIII 261 (380)
Q Consensus 228 D~V~~~~~l~~~~-----~~-------~~~l~~~~r~LkpgG~l~~ 261 (380)
|+|+.-+ .+++. |. -..++-+...|+.||.++-
T Consensus 112 dvVLhDg-apnVg~~w~~DA~~q~~L~l~al~LA~~~l~~~g~fvt 156 (780)
T KOG1098|consen 112 DVVLHDG-APNVGGNWVQDAFQQACLTLRALKLATEFLAKGGTFVT 156 (780)
T ss_pred cEEeecC-CCccchhHHHHHHHhhHHHHHHHHHHHHHHHhcCcccc
Confidence 7776533 33331 11 2356677888999999443
No 343
>PRK07576 short chain dehydrogenase; Provisional
Probab=88.87 E-value=5.1 Score=36.21 Aligned_cols=73 Identities=29% Similarity=0.251 Sum_probs=48.1
Q ss_pred CCEEEEECCCcChHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-----C-----CCC
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-----F-----PDG 225 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~---~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~-----~~~ 225 (380)
+.+||=.| |+|.++..+++.+ |+.|++++.++..++...+.....+ .++.++..|+.+.. + ..+
T Consensus 9 ~k~ilItG-asggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~i~~~~~~~~~~~~ 85 (264)
T PRK07576 9 GKNVVVVG-GTSGINLGIAQAFARAGANVAVASRSQEKVDAAVAQLQQAG--PEGLGVSADVRDYAAVEAAFAQIADEFG 85 (264)
T ss_pred CCEEEEEC-CCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhC--CceEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 67788887 4556666655544 7899999999877665544444332 35678888987631 0 124
Q ss_pred CccEEEecc
Q 016921 226 QFDLVWSME 234 (380)
Q Consensus 226 ~fD~V~~~~ 234 (380)
.+|.++.+.
T Consensus 86 ~iD~vi~~a 94 (264)
T PRK07576 86 PIDVLVSGA 94 (264)
T ss_pred CCCEEEECC
Confidence 689988654
No 344
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=88.79 E-value=1.1 Score=42.08 Aligned_cols=93 Identities=19% Similarity=0.165 Sum_probs=61.2
Q ss_pred CCCEEEEECCCc-ChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCC----C--CCCCCCccEE
Q 016921 158 RPKNVVDVGCGI-GGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ----Q--PFPDGQFDLV 230 (380)
Q Consensus 158 ~~~~vLDiGcGt-G~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~----~--~~~~~~fD~V 230 (380)
++.+||-.|+|. |..+..+++..|.+|+++..+++..+..++. +. ..++...-.. + ..+...+|+|
T Consensus 159 ~g~~vLI~g~g~vG~~a~~lA~~~g~~v~~~~~s~~~~~~~~~~----g~---~~v~~~~~~~~~~~l~~~~~~~~vd~v 231 (337)
T cd08261 159 AGDTVLVVGAGPIGLGVIQVAKARGARVIVVDIDDERLEFAREL----GA---DDTINVGDEDVAARLRELTDGEGADVV 231 (337)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCeEEEECCCHHHHHHHHHh----CC---CEEecCcccCHHHHHHHHhCCCCCCEE
Confidence 478999998774 7788888888799999998888877766432 21 1112111111 0 1133568998
Q ss_pred EeccccCCCCCHHHHHHHHHHhcCCCcEEEEEe
Q 016921 231 WSMESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 231 ~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~ 263 (380)
+.... ....+.++.+.|+++|.++...
T Consensus 232 ld~~g------~~~~~~~~~~~l~~~G~~i~~g 258 (337)
T cd08261 232 IDATG------NPASMEEAVELVAHGGRVVLVG 258 (337)
T ss_pred EECCC------CHHHHHHHHHHHhcCCEEEEEc
Confidence 86421 1346788899999999988654
No 345
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=88.51 E-value=4.7 Score=39.18 Aligned_cols=87 Identities=17% Similarity=0.191 Sum_probs=56.9
Q ss_pred CCCEEEEECCCc-ChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEEecccc
Q 016921 158 RPKNVVDVGCGI-GGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESG 236 (380)
Q Consensus 158 ~~~~vLDiGcGt-G~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l 236 (380)
.+.+|+=+|+|. |......++.+|++|+++|.++.....+.. .| ..+. +.++. . ...|+|+....
T Consensus 194 ~Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp~r~~~A~~----~G----~~v~--~leea-l--~~aDVVItaTG- 259 (406)
T TIGR00936 194 AGKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDPIRALEAAM----DG----FRVM--TMEEA-A--KIGDIFITATG- 259 (406)
T ss_pred CcCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCChhhHHHHHh----cC----CEeC--CHHHH-H--hcCCEEEECCC-
Confidence 488999999994 666666677668999999999865443332 22 2221 22221 1 34698876422
Q ss_pred CCCCCHHHHHH-HHHHhcCCCcEEEEEe
Q 016921 237 EHMPDKSKFVS-ELARVTAPAGTIIIVT 263 (380)
Q Consensus 237 ~~~~~~~~~l~-~~~r~LkpgG~l~~~~ 263 (380)
. ..++. +....+|+|++++...
T Consensus 260 ----~-~~vI~~~~~~~mK~GailiN~G 282 (406)
T TIGR00936 260 ----N-KDVIRGEHFENMKDGAIVANIG 282 (406)
T ss_pred ----C-HHHHHHHHHhcCCCCcEEEEEC
Confidence 2 33444 5889999999988865
No 346
>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins. TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.
Probab=88.09 E-value=1.4 Score=39.73 Aligned_cols=105 Identities=22% Similarity=0.216 Sum_probs=58.6
Q ss_pred CCEEEEECCCcChHHHHHHHH---c---CCEEEEEeCCH--------------------------HHHHHHHHHHHHcCC
Q 016921 159 PKNVVDVGCGIGGSSRYLAKK---F---GAKCQGITLSP--------------------------VQAQRANALAAARGL 206 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~---~---~~~v~giD~s~--------------------------~~~~~a~~~~~~~~~ 206 (380)
+..|+|+||-.|..+..++.. + +.++.+.|.-. ..++..++++...|+
T Consensus 75 pGdivE~GV~rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~~~~~~~~~~s~e~V~~n~~~~gl 154 (248)
T PF05711_consen 75 PGDIVECGVWRGGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWEFHEYNGYLAVSLEEVRENFARYGL 154 (248)
T ss_dssp -SEEEEE--TTSHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCTCCGCCHHCTHHHHHHHHCCCCTTT
T ss_pred CeEEEEEeeCCCHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhhhhhcccccccCHHHHHHHHHHcCC
Confidence 678999999999877655432 2 34688887311 123344444443343
Q ss_pred -CCCeEEEEcCCCCC-C-CCCCCccEEEeccccCCCCCHHHHHHHHHHhcCCCcEEEEEecc
Q 016921 207 -ADKVSFQVGDALQQ-P-FPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWC 265 (380)
Q Consensus 207 -~~~v~~~~~d~~~~-~-~~~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~~~ 265 (380)
.+++.++.+.+.+. | .+.+++-++.+-.=++ .....+|..++..|.|||++++-++.
T Consensus 155 ~~~~v~~vkG~F~dTLp~~p~~~IAll~lD~DlY--esT~~aLe~lyprl~~GGiIi~DDY~ 214 (248)
T PF05711_consen 155 LDDNVRFVKGWFPDTLPDAPIERIALLHLDCDLY--ESTKDALEFLYPRLSPGGIIIFDDYG 214 (248)
T ss_dssp SSTTEEEEES-HHHHCCC-TT--EEEEEE---SH--HHHHHHHHHHGGGEEEEEEEEESSTT
T ss_pred CcccEEEECCcchhhhccCCCccEEEEEEeccch--HHHHHHHHHHHhhcCCCeEEEEeCCC
Confidence 45899999998652 3 2233333332221111 22367899999999999999998754
No 347
>PRK07326 short chain dehydrogenase; Provisional
Probab=87.98 E-value=8.7 Score=33.78 Aligned_cols=75 Identities=17% Similarity=0.117 Sum_probs=49.8
Q ss_pred CCEEEEECCCcChHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-----CC-----CC
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-----FP-----DG 225 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~---~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~~-----~~ 225 (380)
+.+||=+| |+|.++..+++.+ |.+|++++.++.......+.+... .++.++.+|+.+.. +. .+
T Consensus 6 ~~~ilItG-atg~iG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~---~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 81 (237)
T PRK07326 6 GKVALITG-GSKGIGFAIAEALLAEGYKVAITARDQKELEEAAAELNNK---GNVLGLAADVRDEADVQRAVDAIVAAFG 81 (237)
T ss_pred CCEEEEEC-CCCcHHHHHHHHHHHCCCEEEEeeCCHHHHHHHHHHHhcc---CcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 56788888 4677777766655 789999999887665554444322 36888899987631 10 13
Q ss_pred CccEEEeccccC
Q 016921 226 QFDLVWSMESGE 237 (380)
Q Consensus 226 ~fD~V~~~~~l~ 237 (380)
.+|.|+......
T Consensus 82 ~~d~vi~~ag~~ 93 (237)
T PRK07326 82 GLDVLIANAGVG 93 (237)
T ss_pred CCCEEEECCCCC
Confidence 689888765443
No 348
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=87.75 E-value=3.1 Score=39.36 Aligned_cols=94 Identities=21% Similarity=0.264 Sum_probs=58.4
Q ss_pred CCCEEEEECCC-cChHHHHHHHHcCCE-EEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCC---C--CCCCCCcc-E
Q 016921 158 RPKNVVDVGCG-IGGSSRYLAKKFGAK-CQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ---Q--PFPDGQFD-L 229 (380)
Q Consensus 158 ~~~~vLDiGcG-tG~~~~~l~~~~~~~-v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~---~--~~~~~~fD-~ 229 (380)
++.+||=.|+| .|..+..+++..|++ |+++|.+++..+.+++ .|. ..++..+-.. + ......+| +
T Consensus 160 ~g~~vlV~G~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~----~Ga---~~~i~~~~~~~~~~~~~~~~~~~d~~ 232 (347)
T PRK10309 160 EGKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDINSEKLALAKS----LGA---MQTFNSREMSAPQIQSVLRELRFDQL 232 (347)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHH----cCC---ceEecCcccCHHHHHHHhcCCCCCeE
Confidence 47899999886 466777777777776 7899999988776643 232 1111111000 0 01224577 5
Q ss_pred EEeccccCCCCCHHHHHHHHHHhcCCCcEEEEEec
Q 016921 230 VWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (380)
Q Consensus 230 V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~~ 264 (380)
|+-.- .. ...+....+.|++||.+++...
T Consensus 233 v~d~~-----G~-~~~~~~~~~~l~~~G~iv~~G~ 261 (347)
T PRK10309 233 ILETA-----GV-PQTVELAIEIAGPRAQLALVGT 261 (347)
T ss_pred EEECC-----CC-HHHHHHHHHHhhcCCEEEEEcc
Confidence 44211 11 3578889999999999988754
No 349
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=87.67 E-value=3.6 Score=39.03 Aligned_cols=97 Identities=16% Similarity=0.215 Sum_probs=58.9
Q ss_pred CCCEEEEECCCc-ChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC-----C-CCCCCcc--
Q 016921 158 RPKNVVDVGCGI-GGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ-----P-FPDGQFD-- 228 (380)
Q Consensus 158 ~~~~vLDiGcGt-G~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-----~-~~~~~fD-- 228 (380)
++.+||=+|+|. |..+..+++..|.+|+++|.++..++.+++. |...-+.....+..++ . .....+|
T Consensus 166 ~g~~VlV~G~G~vG~~a~~~a~~~G~~vi~~~~~~~~~~~~~~~----Ga~~~i~~~~~~~~~~~~~~~~~t~~~g~d~~ 241 (349)
T TIGR03201 166 KGDLVIVIGAGGVGGYMVQTAKAMGAAVVAIDIDPEKLEMMKGF----GADLTLNPKDKSAREVKKLIKAFAKARGLRST 241 (349)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHh----CCceEecCccccHHHHHHHHHhhcccCCCCCC
Confidence 488999999974 7777778887788999999999988877542 3210011111010010 0 0112344
Q ss_pred --EEEeccccCCCCCHHHHHHHHHHhcCCCcEEEEEec
Q 016921 229 --LVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (380)
Q Consensus 229 --~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~~ 264 (380)
.|+- .... ...++.+.+.|++||++++...
T Consensus 242 ~d~v~d-----~~g~-~~~~~~~~~~l~~~G~iv~~G~ 273 (349)
T TIGR03201 242 GWKIFE-----CSGS-KPGQESALSLLSHGGTLVVVGY 273 (349)
T ss_pred cCEEEE-----CCCC-hHHHHHHHHHHhcCCeEEEECc
Confidence 4432 1111 3467778899999999988764
No 350
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=87.36 E-value=10 Score=35.26 Aligned_cols=92 Identities=16% Similarity=0.123 Sum_probs=60.7
Q ss_pred CCCEEEEEC--CCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC-----CCCCCCccEE
Q 016921 158 RPKNVVDVG--CGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ-----PFPDGQFDLV 230 (380)
Q Consensus 158 ~~~~vLDiG--cGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-----~~~~~~fD~V 230 (380)
++.+||=.| .|.|..+..+++..|++|++++.+++..+.+++ .|. -.++...-.+. ....+.+|+|
T Consensus 143 ~g~~vlI~ga~g~vG~~aiqlA~~~G~~vi~~~~s~~~~~~l~~----~Ga---~~vi~~~~~~~~~~v~~~~~~gvd~v 215 (329)
T cd08294 143 AGETVVVNGAAGAVGSLVGQIAKIKGCKVIGCAGSDDKVAWLKE----LGF---DAVFNYKTVSLEEALKEAAPDGIDCY 215 (329)
T ss_pred CCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH----cCC---CEEEeCCCccHHHHHHHHCCCCcEEE
Confidence 488898887 356778888888889999999999987777654 232 11221111111 1112468888
Q ss_pred EeccccCCCCCHHHHHHHHHHhcCCCcEEEEEe
Q 016921 231 WSMESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 231 ~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~ 263 (380)
+-... ...+....+.|+++|+++...
T Consensus 216 ld~~g-------~~~~~~~~~~l~~~G~iv~~g 241 (329)
T cd08294 216 FDNVG-------GEFSSTVLSHMNDFGRVAVCG 241 (329)
T ss_pred EECCC-------HHHHHHHHHhhccCCEEEEEc
Confidence 74321 246788999999999988754
No 351
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=87.33 E-value=1.6 Score=41.20 Aligned_cols=94 Identities=20% Similarity=0.181 Sum_probs=59.1
Q ss_pred CCCCEEEEECCC-cChHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC------CCCCCCcc
Q 016921 157 KRPKNVVDVGCG-IGGSSRYLAKKFGA-KCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ------PFPDGQFD 228 (380)
Q Consensus 157 ~~~~~vLDiGcG-tG~~~~~l~~~~~~-~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~------~~~~~~fD 228 (380)
.++.+||-.|+| .|..+..+++..+. .+++++.++...+.+++. +. ..++...-.++ -.+.+.+|
T Consensus 166 ~~~~~VlI~g~g~vg~~~iqlak~~g~~~v~~~~~~~~~~~~~~~~----g~---~~vi~~~~~~~~~~i~~~~~~~~~d 238 (347)
T cd05278 166 KPGSTVAVIGAGPVGLCAVAGARLLGAARIIAVDSNPERLDLAKEA----GA---TDIINPKNGDIVEQILELTGGRGVD 238 (347)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHh----CC---cEEEcCCcchHHHHHHHHcCCCCCc
Confidence 357888888876 47777778887774 889998888776665532 21 11221111111 01235799
Q ss_pred EEEeccccCCCCCHHHHHHHHHHhcCCCcEEEEEe
Q 016921 229 LVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 229 ~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~ 263 (380)
+|+-...- ...+.+..+.|+++|+++...
T Consensus 239 ~vld~~g~------~~~~~~~~~~l~~~G~~v~~g 267 (347)
T cd05278 239 CVIEAVGF------EETFEQAVKVVRPGGTIANVG 267 (347)
T ss_pred EEEEccCC------HHHHHHHHHHhhcCCEEEEEc
Confidence 88753211 247888999999999988654
No 352
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=87.26 E-value=5.8 Score=37.05 Aligned_cols=92 Identities=16% Similarity=0.117 Sum_probs=60.4
Q ss_pred CCCEEEEECC--CcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCC-CCC-----CCCCCCccE
Q 016921 158 RPKNVVDVGC--GIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDA-LQQ-----PFPDGQFDL 229 (380)
Q Consensus 158 ~~~~vLDiGc--GtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~-~~~-----~~~~~~fD~ 229 (380)
++.+||=.|. |.|..+..+++..|.+|++++.+++..+.+++ .|. . .++..+- ... ....+.+|+
T Consensus 138 ~g~~VLI~ga~g~vG~~aiqlAk~~G~~Vi~~~~s~~~~~~~~~----lGa-~--~vi~~~~~~~~~~~~~~~~~~gvdv 210 (325)
T TIGR02825 138 GGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKVAYLKK----LGF-D--VAFNYKTVKSLEETLKKASPDGYDC 210 (325)
T ss_pred CCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH----cCC-C--EEEeccccccHHHHHHHhCCCCeEE
Confidence 4889988883 47888888888878999999999887777654 232 1 1121111 011 112346888
Q ss_pred EEeccccCCCCCHHHHHHHHHHhcCCCcEEEEEe
Q 016921 230 VWSMESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 230 V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~ 263 (380)
|+-.. . ...+..+.++|++||+++...
T Consensus 211 v~d~~-----G--~~~~~~~~~~l~~~G~iv~~G 237 (325)
T TIGR02825 211 YFDNV-----G--GEFSNTVIGQMKKFGRIAICG 237 (325)
T ss_pred EEECC-----C--HHHHHHHHHHhCcCcEEEEec
Confidence 87422 1 134688999999999999764
No 353
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=87.16 E-value=2.1 Score=41.24 Aligned_cols=45 Identities=18% Similarity=0.192 Sum_probs=34.7
Q ss_pred CCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHH
Q 016921 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAA 203 (380)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~ 203 (380)
++.+||-|++|.......+... ..+|++||+||.++...+-+.+.
T Consensus 35 ~~d~vl~ItSaG~N~L~yL~~~-P~~I~aVDlNp~Q~aLleLKlAa 79 (380)
T PF11899_consen 35 PDDRVLTITSAGCNALDYLLAG-PKRIHAVDLNPAQNALLELKLAA 79 (380)
T ss_pred CCCeEEEEccCCchHHHHHhcC-CceEEEEeCCHHHHHHHHHHHHH
Confidence 4899999987765555555543 78999999999999887766543
No 354
>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=87.07 E-value=11 Score=34.61 Aligned_cols=79 Identities=16% Similarity=0.050 Sum_probs=56.7
Q ss_pred CCCCEEEEECCCcCh---HHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC----------CC
Q 016921 157 KRPKNVVDVGCGIGG---SSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP----------FP 223 (380)
Q Consensus 157 ~~~~~vLDiGcGtG~---~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~----------~~ 223 (380)
-.+..||==|.|.|. .+..+|++ ++.++..|++..-...-.+.+++.| ++.....|..+.. -+
T Consensus 36 v~g~~vLITGgg~GlGr~ialefa~r-g~~~vl~Din~~~~~etv~~~~~~g---~~~~y~cdis~~eei~~~a~~Vk~e 111 (300)
T KOG1201|consen 36 VSGEIVLITGGGSGLGRLIALEFAKR-GAKLVLWDINKQGNEETVKEIRKIG---EAKAYTCDISDREEIYRLAKKVKKE 111 (300)
T ss_pred ccCCEEEEeCCCchHHHHHHHHHHHh-CCeEEEEeccccchHHHHHHHHhcC---ceeEEEecCCCHHHHHHHHHHHHHh
Confidence 457788888888764 44445554 8899999999988777777666554 6888899987742 23
Q ss_pred CCCccEEEeccccCCC
Q 016921 224 DGQFDLVWSMESGEHM 239 (380)
Q Consensus 224 ~~~fD~V~~~~~l~~~ 239 (380)
-+..|+++.+.++-+.
T Consensus 112 ~G~V~ILVNNAGI~~~ 127 (300)
T KOG1201|consen 112 VGDVDILVNNAGIVTG 127 (300)
T ss_pred cCCceEEEeccccccC
Confidence 4678999887666544
No 355
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=86.98 E-value=2.7 Score=40.21 Aligned_cols=94 Identities=23% Similarity=0.250 Sum_probs=56.1
Q ss_pred CCCEEEEECCC-cChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEE-cCCCCCCCCCCCccEEEeccc
Q 016921 158 RPKNVVDVGCG-IGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQV-GDALQQPFPDGQFDLVWSMES 235 (380)
Q Consensus 158 ~~~~vLDiGcG-tG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~-~d~~~~~~~~~~fD~V~~~~~ 235 (380)
++.+||=.|+| .|..+..+++..|+++++++.+......+. ++.|. ..++. .+...+....+.+|+|+-...
T Consensus 183 ~g~~VlV~G~G~vG~~avq~Ak~~Ga~vi~~~~~~~~~~~~~---~~~Ga---~~vi~~~~~~~~~~~~~~~D~vid~~g 256 (360)
T PLN02586 183 PGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISSSSNKEDEAI---NRLGA---DSFLVSTDPEKMKAAIGTMDYIIDTVS 256 (360)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCcchhhhHH---HhCCC---cEEEcCCCHHHHHhhcCCCCEEEECCC
Confidence 47888889987 577777788877889999988765432221 12232 11111 110011000124788774322
Q ss_pred cCCCCCHHHHHHHHHHhcCCCcEEEEEe
Q 016921 236 GEHMPDKSKFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 236 l~~~~~~~~~l~~~~r~LkpgG~l~~~~ 263 (380)
. ...++.+.+.|++||++++..
T Consensus 257 -----~-~~~~~~~~~~l~~~G~iv~vG 278 (360)
T PLN02586 257 -----A-VHALGPLLGLLKVNGKLITLG 278 (360)
T ss_pred -----C-HHHHHHHHHHhcCCcEEEEeC
Confidence 1 236788899999999998765
No 356
>PRK08324 short chain dehydrogenase; Validated
Probab=86.75 E-value=7.3 Score=40.80 Aligned_cols=101 Identities=23% Similarity=0.224 Sum_probs=63.3
Q ss_pred CCEEEEECCCcChHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-----C-----CCC
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-----F-----PDG 225 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~---~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~-----~~~ 225 (380)
+.+||=.|+ +|.++..+++.+ |.+|+++|.++..++.+.+.+... .++.++.+|+.+.. + ..+
T Consensus 422 gk~vLVTGa-sggIG~~la~~L~~~Ga~Vvl~~r~~~~~~~~~~~l~~~---~~v~~v~~Dvtd~~~v~~~~~~~~~~~g 497 (681)
T PRK08324 422 GKVALVTGA-AGGIGKATAKRLAAEGACVVLADLDEEAAEAAAAELGGP---DRALGVACDVTDEAAVQAAFEEAALAFG 497 (681)
T ss_pred CCEEEEecC-CCHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHHhcc---CcEEEEEecCCCHHHHHHHHHHHHHHcC
Confidence 567887775 455555555544 789999999987766655444322 36888888987632 1 124
Q ss_pred CccEEEeccccCCCCC-------------------HHHHHHHHHHhcCC---CcEEEEEe
Q 016921 226 QFDLVWSMESGEHMPD-------------------KSKFVSELARVTAP---AGTIIIVT 263 (380)
Q Consensus 226 ~fD~V~~~~~l~~~~~-------------------~~~~l~~~~r~Lkp---gG~l~~~~ 263 (380)
.+|+|+.+........ ...+++.+.+.+++ ||.+++..
T Consensus 498 ~iDvvI~~AG~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~g~iV~vs 557 (681)
T PRK08324 498 GVDIVVSNAGIAISGPIEETSDEDWRRSFDVNATGHFLVAREAVRIMKAQGLGGSIVFIA 557 (681)
T ss_pred CCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCcEEEEEC
Confidence 6899887665432211 12456666777766 67777754
No 357
>PLN02494 adenosylhomocysteinase
Probab=86.73 E-value=3.1 Score=41.06 Aligned_cols=101 Identities=17% Similarity=0.176 Sum_probs=63.0
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEECCC-cChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCC
Q 016921 141 MIEETLRFAGVSEDPTKRPKNVVDVGCG-IGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ 219 (380)
Q Consensus 141 ~~~~ll~~~~~~~~~~~~~~~vLDiGcG-tG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 219 (380)
.++.+++..++. ..+.+|+=+|+| .|......++.+|++|+++|.++.....+.. .| ..+. +..+
T Consensus 240 ~~d~i~r~t~i~----LaGKtVvViGyG~IGr~vA~~aka~Ga~VIV~e~dp~r~~eA~~----~G----~~vv--~leE 305 (477)
T PLN02494 240 LPDGLMRATDVM----IAGKVAVICGYGDVGKGCAAAMKAAGARVIVTEIDPICALQALM----EG----YQVL--TLED 305 (477)
T ss_pred HHHHHHHhcCCc----cCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhHHHHh----cC----Ceec--cHHH
Confidence 455666554432 248999999999 3655555555568999999999865443322 22 2211 2222
Q ss_pred CCCCCCCccEEEeccccCCCCCHHHHHHHHHHhcCCCcEEEEEe
Q 016921 220 QPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 220 ~~~~~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~ 263 (380)
. + ...|+|+....- ..-+..+....+|+||.|+...
T Consensus 306 a-l--~~ADVVI~tTGt-----~~vI~~e~L~~MK~GAiLiNvG 341 (477)
T PLN02494 306 V-V--SEADIFVTTTGN-----KDIIMVDHMRKMKNNAIVCNIG 341 (477)
T ss_pred H-H--hhCCEEEECCCC-----ccchHHHHHhcCCCCCEEEEcC
Confidence 1 1 357988874322 2223478888999999999875
No 358
>PRK12939 short chain dehydrogenase; Provisional
Probab=86.66 E-value=5.5 Score=35.31 Aligned_cols=75 Identities=19% Similarity=0.134 Sum_probs=50.6
Q ss_pred CCEEEEECCCcChHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-----CC-----CC
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-----FP-----DG 225 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~---~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~~-----~~ 225 (380)
+.+||=.| |+|..+..+++.+ |.+|++++.++..+....+.+...+ .++.++.+|+.+.. +. -+
T Consensus 7 ~~~vlItG-a~g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 83 (250)
T PRK12939 7 GKRALVTG-AARGLGAAFAEALAEAGATVAFNDGLAAEARELAAALEAAG--GRAHAIAADLADPASVQRFFDAAAAALG 83 (250)
T ss_pred CCEEEEeC-CCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 67788666 5667777776655 7899999998877666555544333 46888999987642 10 14
Q ss_pred CccEEEecccc
Q 016921 226 QFDLVWSMESG 236 (380)
Q Consensus 226 ~fD~V~~~~~l 236 (380)
.+|.|+.....
T Consensus 84 ~id~vi~~ag~ 94 (250)
T PRK12939 84 GLDGLVNNAGI 94 (250)
T ss_pred CCCEEEECCCC
Confidence 68988876544
No 359
>PRK08265 short chain dehydrogenase; Provisional
Probab=86.38 E-value=8.8 Score=34.58 Aligned_cols=72 Identities=15% Similarity=0.212 Sum_probs=46.4
Q ss_pred CCEEEEECCCcChHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-----C-----CCC
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-----F-----PDG 225 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~---~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~-----~~~ 225 (380)
+.++|=.|+ +|.++..+++.+ |.+|+.+|.++..++...+.. + .++.++.+|+.+.. + .-+
T Consensus 6 ~k~vlItGa-s~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~---~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~g 79 (261)
T PRK08265 6 GKVAIVTGG-ATLIGAAVARALVAAGARVAIVDIDADNGAAVAASL---G--ERARFIATDITDDAAIERAVATVVARFG 79 (261)
T ss_pred CCEEEEECC-CChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh---C--CeeEEEEecCCCHHHHHHHHHHHHHHhC
Confidence 567777774 555666666554 889999999876554433322 2 46888899987642 1 114
Q ss_pred CccEEEecccc
Q 016921 226 QFDLVWSMESG 236 (380)
Q Consensus 226 ~fD~V~~~~~l 236 (380)
..|.++.+...
T Consensus 80 ~id~lv~~ag~ 90 (261)
T PRK08265 80 RVDILVNLACT 90 (261)
T ss_pred CCCEEEECCCC
Confidence 68988876543
No 360
>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast
Probab=86.28 E-value=1.9 Score=40.53 Aligned_cols=93 Identities=18% Similarity=0.188 Sum_probs=59.4
Q ss_pred CCCEEEEECCCc-ChHHHHHHHHcCCE-EEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCC---CC-C-CCCCCccEE
Q 016921 158 RPKNVVDVGCGI-GGSSRYLAKKFGAK-CQGITLSPVQAQRANALAAARGLADKVSFQVGDAL---QQ-P-FPDGQFDLV 230 (380)
Q Consensus 158 ~~~~vLDiGcGt-G~~~~~l~~~~~~~-v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~---~~-~-~~~~~fD~V 230 (380)
++.+||-.|+|. |..+..+++..|.. +++++.++...+.+++ .+. ..++..+-. .+ . .+...+|+|
T Consensus 159 ~~~~vlI~g~g~~g~~~~~lA~~~G~~~v~~~~~~~~~~~~l~~----~g~---~~~~~~~~~~~~~~~~~~~~~~~d~v 231 (343)
T cd08236 159 LGDTVVVIGAGTIGLLAIQWLKILGAKRVIAVDIDDEKLAVARE----LGA---DDTINPKEEDVEKVRELTEGRGADLV 231 (343)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH----cCC---CEEecCccccHHHHHHHhCCCCCCEE
Confidence 478899998765 77777778777876 9999998877766543 232 111211100 00 1 123458988
Q ss_pred EeccccCCCCCHHHHHHHHHHhcCCCcEEEEEe
Q 016921 231 WSMESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 231 ~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~ 263 (380)
+... .....+..+.+.|+++|.++...
T Consensus 232 ld~~------g~~~~~~~~~~~l~~~G~~v~~g 258 (343)
T cd08236 232 IEAA------GSPATIEQALALARPGGKVVLVG 258 (343)
T ss_pred EECC------CCHHHHHHHHHHhhcCCEEEEEc
Confidence 7541 12356788999999999988765
No 361
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=86.26 E-value=12 Score=35.08 Aligned_cols=92 Identities=13% Similarity=0.136 Sum_probs=59.2
Q ss_pred CCEEEEECC--CcChHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC-----CCCCCCccEE
Q 016921 159 PKNVVDVGC--GIGGSSRYLAKKFGA-KCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ-----PFPDGQFDLV 230 (380)
Q Consensus 159 ~~~vLDiGc--GtG~~~~~l~~~~~~-~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-----~~~~~~fD~V 230 (380)
+.+||=.|+ |.|..+..+++..|+ +|++++.+++..+.+++.+ |.. .++..+-.++ ...++.+|+|
T Consensus 155 ~~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~s~~~~~~~~~~l---Ga~---~vi~~~~~~~~~~i~~~~~~gvd~v 228 (345)
T cd08293 155 NQTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGSDEKCQLLKSEL---GFD---AAINYKTDNVAERLRELCPEGVDVY 228 (345)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhc---CCc---EEEECCCCCHHHHHHHHCCCCceEE
Confidence 378888885 578888888888787 8999999988776665432 321 1222111111 0112568988
Q ss_pred EeccccCCCCCHHHHHHHHHHhcCCCcEEEEEe
Q 016921 231 WSMESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 231 ~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~ 263 (380)
+-... . ..+..+.+.|+++|+++...
T Consensus 229 id~~g-----~--~~~~~~~~~l~~~G~iv~~G 254 (345)
T cd08293 229 FDNVG-----G--EISDTVISQMNENSHIILCG 254 (345)
T ss_pred EECCC-----c--HHHHHHHHHhccCCEEEEEe
Confidence 74321 2 23578899999999998754
No 362
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=86.14 E-value=9.5 Score=36.97 Aligned_cols=100 Identities=19% Similarity=0.180 Sum_probs=60.6
Q ss_pred CCCEEEEECCC-cChHHHHHHHHcCCE-EEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEc---CCCC-C-C-CCCCCccE
Q 016921 158 RPKNVVDVGCG-IGGSSRYLAKKFGAK-CQGITLSPVQAQRANALAAARGLADKVSFQVG---DALQ-Q-P-FPDGQFDL 229 (380)
Q Consensus 158 ~~~~vLDiGcG-tG~~~~~l~~~~~~~-v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~---d~~~-~-~-~~~~~fD~ 229 (380)
++.+||=.|+| .|..+..+++..|.+ ++.+|.++.-++.+++ .|. . .+... +..+ + . .....+|+
T Consensus 185 ~g~~VlV~G~G~iG~~aiqlAk~~Ga~~vi~~d~~~~r~~~a~~----~Ga--~-~v~~~~~~~~~~~v~~~~~~~g~Dv 257 (393)
T TIGR02819 185 PGSTVYIAGAGPVGLAAAASAQLLGAAVVIVGDLNPARLAQARS----FGC--E-TVDLSKDATLPEQIEQILGEPEVDC 257 (393)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHH----cCC--e-EEecCCcccHHHHHHHHcCCCCCcE
Confidence 37788778876 466667777776765 5667888877777765 232 1 11111 1100 0 0 12346898
Q ss_pred EEeccccCC--------CCCHHHHHHHHHHhcCCCcEEEEEec
Q 016921 230 VWSMESGEH--------MPDKSKFVSELARVTAPAGTIIIVTW 264 (380)
Q Consensus 230 V~~~~~l~~--------~~~~~~~l~~~~r~LkpgG~l~~~~~ 264 (380)
|+-.-.... ..+....++++.+.+++||.+++.-.
T Consensus 258 vid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~G~ 300 (393)
T TIGR02819 258 AVDCVGFEARGHGHDGKKEAPATVLNSLMEVTRVGGAIGIPGL 300 (393)
T ss_pred EEECCCCccccccccccccchHHHHHHHHHHhhCCCEEEEeee
Confidence 875433210 01224588999999999999998765
No 363
>PRK11524 putative methyltransferase; Provisional
Probab=86.07 E-value=0.69 Score=42.72 Aligned_cols=54 Identities=24% Similarity=0.343 Sum_probs=37.6
Q ss_pred CeEEEEcCCCCC--CCCCCCccEEEec--ccc--C--CC----------CCHHHHHHHHHHhcCCCcEEEEE
Q 016921 209 KVSFQVGDALQQ--PFPDGQFDLVWSM--ESG--E--HM----------PDKSKFVSELARVTAPAGTIIIV 262 (380)
Q Consensus 209 ~v~~~~~d~~~~--~~~~~~fD~V~~~--~~l--~--~~----------~~~~~~l~~~~r~LkpgG~l~~~ 262 (380)
+..++++|..+. .+++++||+|++. +.+ . .. .-....+.++.++|||||.+++.
T Consensus 8 ~~~i~~gD~~~~l~~l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~ 79 (284)
T PRK11524 8 AKTIIHGDALTELKKIPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIM 79 (284)
T ss_pred CCEEEeccHHHHHHhcccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 456788887774 4667899999983 211 0 00 00146889999999999999985
No 364
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=86.06 E-value=14 Score=35.35 Aligned_cols=97 Identities=21% Similarity=0.201 Sum_probs=59.8
Q ss_pred CCCEEEEECCC-cChHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEE--cCCCC-C-CCCCCCccEEE
Q 016921 158 RPKNVVDVGCG-IGGSSRYLAKKFGA-KCQGITLSPVQAQRANALAAARGLADKVSFQV--GDALQ-Q-PFPDGQFDLVW 231 (380)
Q Consensus 158 ~~~~vLDiGcG-tG~~~~~l~~~~~~-~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~--~d~~~-~-~~~~~~fD~V~ 231 (380)
++.+||=+|+| .|..+..+++..|+ +|+++|.++..++.+++ .|...-+.... .+..+ + ....+.+|+|+
T Consensus 185 ~g~~VlV~G~G~iG~~a~q~Ak~~G~~~Vi~~~~~~~~~~~a~~----~Ga~~~i~~~~~~~~~~~~v~~~~~~g~d~vi 260 (368)
T TIGR02818 185 EGDTVAVFGLGGIGLSVIQGARMAKASRIIAIDINPAKFELAKK----LGATDCVNPNDYDKPIQEVIVEITDGGVDYSF 260 (368)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH----hCCCeEEcccccchhHHHHHHHHhCCCCCEEE
Confidence 48899999987 46677778887777 79999999998887754 23210011110 00000 0 01123588876
Q ss_pred eccccCCCCCHHHHHHHHHHhcCCC-cEEEEEec
Q 016921 232 SMESGEHMPDKSKFVSELARVTAPA-GTIIIVTW 264 (380)
Q Consensus 232 ~~~~l~~~~~~~~~l~~~~r~Lkpg-G~l~~~~~ 264 (380)
-.-. . ...+..+.+.+++| |++++...
T Consensus 261 d~~G-----~-~~~~~~~~~~~~~~~G~~v~~g~ 288 (368)
T TIGR02818 261 ECIG-----N-VNVMRAALECCHKGWGESIIIGV 288 (368)
T ss_pred ECCC-----C-HHHHHHHHHHhhcCCCeEEEEec
Confidence 4321 1 34678888999886 99887654
No 365
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=85.90 E-value=9 Score=36.03 Aligned_cols=93 Identities=22% Similarity=0.241 Sum_probs=60.0
Q ss_pred CCCEEEEECCCc-ChHHHHHHHHcCCE-EEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCC-------C--CCCCCC
Q 016921 158 RPKNVVDVGCGI-GGSSRYLAKKFGAK-CQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ-------Q--PFPDGQ 226 (380)
Q Consensus 158 ~~~~vLDiGcGt-G~~~~~l~~~~~~~-v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-------~--~~~~~~ 226 (380)
++.+||=.|+|. |..+..+++..|.+ |++++.++...+.+++. +. -.++..+-.. + ......
T Consensus 162 ~g~~vlI~g~g~vG~~a~~lak~~G~~~v~~~~~~~~~~~~~~~~----g~---~~vi~~~~~~~~~~~~~~~~~~~~~~ 234 (343)
T cd05285 162 PGDTVLVFGAGPIGLLTAAVAKAFGATKVVVTDIDPSRLEFAKEL----GA---THTVNVRTEDTPESAEKIAELLGGKG 234 (343)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHc----CC---cEEeccccccchhHHHHHHHHhCCCC
Confidence 488888888764 77777788877877 89999888877766542 21 1111111111 0 123356
Q ss_pred ccEEEeccccCCCCCHHHHHHHHHHhcCCCcEEEEEe
Q 016921 227 FDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 227 fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~ 263 (380)
+|+|+-.... ...+....+.|+++|+++...
T Consensus 235 ~d~vld~~g~------~~~~~~~~~~l~~~G~~v~~g 265 (343)
T cd05285 235 PDVVIECTGA------ESCIQTAIYATRPGGTVVLVG 265 (343)
T ss_pred CCEEEECCCC------HHHHHHHHHHhhcCCEEEEEc
Confidence 9998854321 236788899999999988754
No 366
>PLN02740 Alcohol dehydrogenase-like
Probab=85.79 E-value=6.1 Score=38.03 Aligned_cols=94 Identities=18% Similarity=0.272 Sum_probs=60.3
Q ss_pred CCCEEEEECCC-cChHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCC--C-----CCCCCCcc
Q 016921 158 RPKNVVDVGCG-IGGSSRYLAKKFGA-KCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ--Q-----PFPDGQFD 228 (380)
Q Consensus 158 ~~~~vLDiGcG-tG~~~~~l~~~~~~-~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~--~-----~~~~~~fD 228 (380)
++.+||=+|+| .|..+..+++..|+ +|+++|.+++.++.+++ .|.. .++...-.+ . ....+.+|
T Consensus 198 ~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a~~----~Ga~---~~i~~~~~~~~~~~~v~~~~~~g~d 270 (381)
T PLN02740 198 AGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKFEKGKE----MGIT---DFINPKDSDKPVHERIREMTGGGVD 270 (381)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHH----cCCc---EEEecccccchHHHHHHHHhCCCCC
Confidence 48899999987 46677777777777 69999999988887754 2321 122111100 0 01122689
Q ss_pred EEEeccccCCCCCHHHHHHHHHHhcCCC-cEEEEEec
Q 016921 229 LVWSMESGEHMPDKSKFVSELARVTAPA-GTIIIVTW 264 (380)
Q Consensus 229 ~V~~~~~l~~~~~~~~~l~~~~r~Lkpg-G~l~~~~~ 264 (380)
+|+-... . ...+..+...+++| |++++...
T Consensus 271 vvid~~G-----~-~~~~~~a~~~~~~g~G~~v~~G~ 301 (381)
T PLN02740 271 YSFECAG-----N-VEVLREAFLSTHDGWGLTVLLGI 301 (381)
T ss_pred EEEECCC-----C-hHHHHHHHHhhhcCCCEEEEEcc
Confidence 8875332 1 25678888899997 98877653
No 367
>TIGR00497 hsdM type I restriction system adenine methylase (hsdM). Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).
Probab=85.73 E-value=17 Score=36.48 Aligned_cols=106 Identities=18% Similarity=0.201 Sum_probs=65.6
Q ss_pred CCCEEEEECCCcChHHHHHHHHc-----CCEEEEEeCCHHHHHHHHHHHHHcCCCC-CeEEEEcCCCCC-CC-CCCCccE
Q 016921 158 RPKNVVDVGCGIGGSSRYLAKKF-----GAKCQGITLSPVQAQRANALAAARGLAD-KVSFQVGDALQQ-PF-PDGQFDL 229 (380)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~-----~~~v~giD~s~~~~~~a~~~~~~~~~~~-~v~~~~~d~~~~-~~-~~~~fD~ 229 (380)
++..|.|..||+|.+.....+.. ...++|.+..+.+...++....-.+... ......+|-... .+ ...+||.
T Consensus 217 p~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm~l~~~~~~t~~~~~~dtl~~~d~~~~~~~D~ 296 (501)
T TIGR00497 217 TVDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNMILHNIDYANFNIINADTLTTKEWENENGFEV 296 (501)
T ss_pred CCCcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHHHHcCCCccccCcccCCcCCCccccccccCCE
Confidence 36789999999999887654432 2469999999999999888754444321 222333332221 11 2345777
Q ss_pred EEeccc--------------------cCC----CCC-HHHHHHHHHHhcCCCcEEEEEe
Q 016921 230 VWSMES--------------------GEH----MPD-KSKFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 230 V~~~~~--------------------l~~----~~~-~~~~l~~~~r~LkpgG~l~~~~ 263 (380)
|+++-- +.| ..+ --.++..+..+|++||+..+.-
T Consensus 297 v~~NpPf~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~afi~h~~~~L~~gG~~aiI~ 355 (501)
T TIGR00497 297 VVSNPPYSISWAGDKKSNLVSDVRFKDAGTLAPNSKADLAFVLHALYVLGQEGTAAIVC 355 (501)
T ss_pred EeecCCcccccccccccccccccchhcccCCCCCchhhHHHHHHHHHhcCCCCeEEEEe
Confidence 664321 111 111 2367888999999999866654
No 368
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=85.57 E-value=5.8 Score=30.94 Aligned_cols=88 Identities=20% Similarity=0.286 Sum_probs=55.4
Q ss_pred CCEEEEECCCcCh-HHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCC-CCCccEEEecccc
Q 016921 159 PKNVVDVGCGIGG-SSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFP-DGQFDLVWSMESG 236 (380)
Q Consensus 159 ~~~vLDiGcGtG~-~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~~fD~V~~~~~l 236 (380)
..+|+|||-|-=. .+..|+++ |..|+++|+++.. | +..++++..|..+.... -+..|+|++ +
T Consensus 14 ~gkVvEVGiG~~~~VA~~L~e~-g~dv~atDI~~~~---a---------~~g~~~v~DDitnP~~~iY~~A~lIYS---i 77 (129)
T COG1255 14 RGKVVEVGIGFFLDVAKRLAER-GFDVLATDINEKT---A---------PEGLRFVVDDITNPNISIYEGADLIYS---I 77 (129)
T ss_pred CCcEEEEccchHHHHHHHHHHc-CCcEEEEeccccc---C---------cccceEEEccCCCccHHHhhCccceee---c
Confidence 4599999988533 45556665 8999999999861 1 14689999999885421 134566665 3
Q ss_pred CCCCCHHHHHHHHHHhcCCCcEEEEEec
Q 016921 237 EHMPDKSKFVSELARVTAPAGTIIIVTW 264 (380)
Q Consensus 237 ~~~~~~~~~l~~~~r~LkpgG~l~~~~~ 264 (380)
.--++.+..+-.+.+.+ |..+++...
T Consensus 78 RpppEl~~~ildva~aV--ga~l~I~pL 103 (129)
T COG1255 78 RPPPELQSAILDVAKAV--GAPLYIKPL 103 (129)
T ss_pred CCCHHHHHHHHHHHHhh--CCCEEEEec
Confidence 33345555555555543 344555543
No 369
>PRK07806 short chain dehydrogenase; Provisional
Probab=85.47 E-value=14 Score=32.72 Aligned_cols=102 Identities=19% Similarity=0.150 Sum_probs=59.0
Q ss_pred CCEEEEECCCcChHHHHHHHHc---CCEEEEEeCCH-HHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-----CC-----C
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSP-VQAQRANALAAARGLADKVSFQVGDALQQP-----FP-----D 224 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~---~~~v~giD~s~-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~~-----~ 224 (380)
+.+||-.|+ +|.++..+++.+ |.+|++++.+. ...+.....+...+ .++.++.+|+.+.. +. -
T Consensus 6 ~k~vlItGa-sggiG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~ 82 (248)
T PRK07806 6 GKTALVTGS-SRGIGADTAKILAGAGAHVVVNYRQKAPRANKVVAEIEAAG--GRASAVGADLTDEESVAALMDTAREEF 82 (248)
T ss_pred CcEEEEECC-CCcHHHHHHHHHHHCCCEEEEEeCCchHhHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHHHhC
Confidence 578888885 455666665544 78898887654 23333333333322 45788889987642 00 1
Q ss_pred CCccEEEeccccCCCC-------------CHHHHHHHHHHhcCCCcEEEEEe
Q 016921 225 GQFDLVWSMESGEHMP-------------DKSKFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 225 ~~fD~V~~~~~l~~~~-------------~~~~~l~~~~r~LkpgG~l~~~~ 263 (380)
+.+|.|+......... -...+++.+.+.++.+|.+++..
T Consensus 83 ~~~d~vi~~ag~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~~~~~~~iv~is 134 (248)
T PRK07806 83 GGLDALVLNASGGMESGMDEDYAMRLNRDAQRNLARAALPLMPAGSRVVFVT 134 (248)
T ss_pred CCCcEEEECCCCCCCCCCCcceeeEeeeHHHHHHHHHHHhhccCCceEEEEe
Confidence 3688877654332110 12356677777777677766654
No 370
>KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=85.32 E-value=4.1 Score=38.82 Aligned_cols=123 Identities=15% Similarity=0.162 Sum_probs=75.1
Q ss_pred HHHHHHHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcC-CEEEEEeCCHHHHHHHHHH-------HHHcCC-
Q 016921 136 AAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFG-AKCQGITLSPVQAQRANAL-------AAARGL- 206 (380)
Q Consensus 136 ~~~~~~~~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~-~~v~giD~s~~~~~~a~~~-------~~~~~~- 206 (380)
+.+...+..+++.+.+.+ +....|+|+|.|.....++...+ ..-+|+++...--+.+..+ .+-.|-
T Consensus 175 E~~~~ql~si~dEl~~g~-----~D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~ 249 (419)
T KOG3924|consen 175 ETQLEQLRSIVDELKLGP-----ADVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKK 249 (419)
T ss_pred hhhHHHHHHHHHHhccCC-----CCcccCCCcccchhhHHHHHhhccccccceeeecCcHHHHHHHHHHHHHHHHHhCCC
Confidence 334445555566665554 88999999999999988887543 3456666654322222221 111232
Q ss_pred CCCeEEEEcCCCCCCC---CCCCccEEEeccccCCCCCHHHHHHHHHHhcCCCcEEEEEec
Q 016921 207 ADKVSFQVGDALQQPF---PDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (380)
Q Consensus 207 ~~~v~~~~~d~~~~~~---~~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~~ 264 (380)
+..++.+++++.+... -....++|+++.+..- ++...-+.++..-+++|-+++-...
T Consensus 250 ~~~~~~i~gsf~~~~~v~eI~~eatvi~vNN~~Fd-p~L~lr~~eil~~ck~gtrIiS~~~ 309 (419)
T KOG3924|consen 250 PNKIETIHGSFLDPKRVTEIQTEATVIFVNNVAFD-PELKLRSKEILQKCKDGTRIISSKP 309 (419)
T ss_pred cCceeecccccCCHHHHHHHhhcceEEEEecccCC-HHHHHhhHHHHhhCCCcceEecccc
Confidence 4557778888765321 1245677777665432 3333445588899999999888763
No 371
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=85.29 E-value=1.6 Score=41.98 Aligned_cols=61 Identities=21% Similarity=0.277 Sum_probs=50.9
Q ss_pred CCCCCeEEEEcCCCCC--CCCCCCccEEEeccccCCCCC--HHHHHHHHHHhcCCCcEEEEEeccC
Q 016921 205 GLADKVSFQVGDALQQ--PFPDGQFDLVWSMESGEHMPD--KSKFVSELARVTAPAGTIIIVTWCH 266 (380)
Q Consensus 205 ~~~~~v~~~~~d~~~~--~~~~~~fD~V~~~~~l~~~~~--~~~~l~~~~r~LkpgG~l~~~~~~~ 266 (380)
++ ++++++.+++.+. ..+++++|.++....+.++++ ..+.++++.+.++|||++++=....
T Consensus 273 ~~-drv~i~t~si~~~L~~~~~~s~~~~vL~D~~Dwm~~~~~~~~~~~l~~~~~pgaRV~~Rsa~~ 337 (380)
T PF11899_consen 273 RL-DRVRIHTDSIEEVLRRLPPGSFDRFVLSDHMDWMDPEQLNEEWQELARTARPGARVLWRSAAV 337 (380)
T ss_pred CC-CeEEEEeccHHHHHHhCCCCCeeEEEecchhhhCCHHHHHHHHHHHHHHhCCCCEEEEeeCCC
Confidence 44 7899999998874 246799999999999999965 4688999999999999999976543
No 372
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=85.25 E-value=4.1 Score=39.82 Aligned_cols=87 Identities=17% Similarity=0.173 Sum_probs=55.8
Q ss_pred CCCEEEEECCCc-ChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEEecccc
Q 016921 158 RPKNVVDVGCGI-GGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESG 236 (380)
Q Consensus 158 ~~~~vLDiGcGt-G~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l 236 (380)
.+.+|+=+|+|. |......++..|++|+.+|.++.....+.. .| ..+ .++.+. -...|+|+...
T Consensus 211 ~Gk~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~dp~ra~~A~~----~G----~~v--~~l~ea---l~~aDVVI~aT-- 275 (425)
T PRK05476 211 AGKVVVVAGYGDVGKGCAQRLRGLGARVIVTEVDPICALQAAM----DG----FRV--MTMEEA---AELGDIFVTAT-- 275 (425)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCchhhHHHHh----cC----CEe--cCHHHH---HhCCCEEEECC--
Confidence 488999999984 555555555558999999999876443322 12 221 122221 13589987643
Q ss_pred CCCCCHHHHHH-HHHHhcCCCcEEEEEe
Q 016921 237 EHMPDKSKFVS-ELARVTAPAGTIIIVT 263 (380)
Q Consensus 237 ~~~~~~~~~l~-~~~r~LkpgG~l~~~~ 263 (380)
... .++. +....+|+|++++...
T Consensus 276 ---G~~-~vI~~~~~~~mK~GailiNvG 299 (425)
T PRK05476 276 ---GNK-DVITAEHMEAMKDGAILANIG 299 (425)
T ss_pred ---CCH-HHHHHHHHhcCCCCCEEEEcC
Confidence 222 3454 7889999999888865
No 373
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=85.13 E-value=12 Score=36.53 Aligned_cols=100 Identities=17% Similarity=0.132 Sum_probs=60.1
Q ss_pred CCCCEEEEEC-CC-cChHHHHHHHHcCC---EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCC---CC-----C-C
Q 016921 157 KRPKNVVDVG-CG-IGGSSRYLAKKFGA---KCQGITLSPVQAQRANALAAARGLADKVSFQVGDAL---QQ-----P-F 222 (380)
Q Consensus 157 ~~~~~vLDiG-cG-tG~~~~~l~~~~~~---~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~---~~-----~-~ 222 (380)
.++.+||=+| +| .|..+..+++..+. +|+++|.++..++.+++................|.. ++ . .
T Consensus 174 ~~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~~~~~r~~~a~~~~~~~~~~~Ga~~~~i~~~~~~~~~~~v~~~t 253 (410)
T cd08238 174 KPGGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTDVNDERLARAQRLFPPEAASRGIELLYVNPATIDDLHATLMELT 253 (410)
T ss_pred CCCCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEEcCCHHHHHHHHHhccccccccCceEEEECCCccccHHHHHHHHh
Confidence 3478898887 34 67788888887543 799999999999888774211000001111111221 11 0 1
Q ss_pred CCCCccEEEeccccCCCCCHHHHHHHHHHhcCCCcEEEEE
Q 016921 223 PDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIV 262 (380)
Q Consensus 223 ~~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~ 262 (380)
....+|+|+.... . ...+..+.+.++++|.+++.
T Consensus 254 ~g~g~D~vid~~g-----~-~~~~~~a~~~l~~~G~~v~~ 287 (410)
T cd08238 254 GGQGFDDVFVFVP-----V-PELVEEADTLLAPDGCLNFF 287 (410)
T ss_pred CCCCCCEEEEcCC-----C-HHHHHHHHHHhccCCeEEEE
Confidence 2346888875321 1 35778899999998876654
No 374
>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta
Probab=85.05 E-value=15 Score=33.94 Aligned_cols=89 Identities=18% Similarity=0.178 Sum_probs=58.6
Q ss_pred CCCEEEEECCC-cChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEEecccc
Q 016921 158 RPKNVVDVGCG-IGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESG 236 (380)
Q Consensus 158 ~~~~vLDiGcG-tG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l 236 (380)
++.+||=.|+| .|..+..+++..|.++++++.+++..+.+++ .|.. .+ .+.... ...+.+|+|+-...
T Consensus 155 ~g~~vlV~g~g~vg~~~~q~a~~~G~~vi~~~~~~~~~~~~~~----~g~~-~~----~~~~~~-~~~~~~d~vid~~g- 223 (319)
T cd08242 155 PGDKVAVLGDGKLGLLIAQVLALTGPDVVLVGRHSEKLALARR----LGVE-TV----LPDEAE-SEGGGFDVVVEATG- 223 (319)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHH----cCCc-EE----eCcccc-ccCCCCCEEEECCC-
Confidence 47888888765 3555556666668899999999988887765 2321 11 111111 23456998875421
Q ss_pred CCCCCHHHHHHHHHHhcCCCcEEEEE
Q 016921 237 EHMPDKSKFVSELARVTAPAGTIIIV 262 (380)
Q Consensus 237 ~~~~~~~~~l~~~~r~LkpgG~l~~~ 262 (380)
. ...+..+.+.|+++|.+++.
T Consensus 224 ----~-~~~~~~~~~~l~~~g~~v~~ 244 (319)
T cd08242 224 ----S-PSGLELALRLVRPRGTVVLK 244 (319)
T ss_pred ----C-hHHHHHHHHHhhcCCEEEEE
Confidence 1 34678888999999999874
No 375
>COG4017 Uncharacterized protein conserved in archaea [Function unknown]
Probab=84.97 E-value=5.5 Score=34.09 Aligned_cols=87 Identities=20% Similarity=0.229 Sum_probs=60.0
Q ss_pred CCCEEEEECCC-cChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEEecccc
Q 016921 158 RPKNVVDVGCG-IGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESG 236 (380)
Q Consensus 158 ~~~~vLDiGcG-tG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l 236 (380)
.+.+||=+|.= ||.....+..+ .++|+.+|+.|.|-.. +|+++.|..+ +.+..+.+|+|+-...+
T Consensus 44 E~~~vli~G~YltG~~~a~~Ls~-~~~vtv~Di~p~~r~~---------lp~~v~Fr~~----~~~~~G~~DlivDlTGl 109 (254)
T COG4017 44 EFKEVLIFGVYLTGNYTAQMLSK-ADKVTVVDIHPFMRGF---------LPNNVKFRNL----LKFIRGEVDLIVDLTGL 109 (254)
T ss_pred CcceEEEEEeeehhHHHHHHhcc-cceEEEecCCHHHHhc---------CCCCccHhhh----cCCCCCceeEEEecccc
Confidence 37889999976 77777766665 7899999999987543 4567777654 33457889999988777
Q ss_pred CCCCCHHHHHHHHHHhcCCCcEEEEEecc
Q 016921 237 EHMPDKSKFVSELARVTAPAGTIIIVTWC 265 (380)
Q Consensus 237 ~~~~~~~~~l~~~~r~LkpgG~l~~~~~~ 265 (380)
..+ ++ +..+-+.| +.+++-+..
T Consensus 110 GG~-~P-----e~L~~fnp-~vfiVEdP~ 131 (254)
T COG4017 110 GGI-EP-----EFLAKFNP-KVFIVEDPK 131 (254)
T ss_pred CCC-CH-----HHHhccCC-ceEEEECCC
Confidence 765 22 23333444 455555543
No 376
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=84.84 E-value=4.9 Score=37.89 Aligned_cols=97 Identities=19% Similarity=0.241 Sum_probs=63.0
Q ss_pred CCCEEEEEC--CCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC---CCCCCCccEEEe
Q 016921 158 RPKNVVDVG--CGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ---PFPDGQFDLVWS 232 (380)
Q Consensus 158 ~~~~vLDiG--cGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~---~~~~~~fD~V~~ 232 (380)
++.+||=.| .|.|.++..|++..|..++++.-+++-.+.+++ .|-..-+.+...|+.+- ......+|+|+-
T Consensus 142 ~g~~VLV~gaaGgVG~~aiQlAk~~G~~~v~~~~s~~k~~~~~~----lGAd~vi~y~~~~~~~~v~~~t~g~gvDvv~D 217 (326)
T COG0604 142 PGETVLVHGAAGGVGSAAIQLAKALGATVVAVVSSSEKLELLKE----LGADHVINYREEDFVEQVRELTGGKGVDVVLD 217 (326)
T ss_pred CCCEEEEecCCchHHHHHHHHHHHcCCcEEEEecCHHHHHHHHh----cCCCEEEcCCcccHHHHHHHHcCCCCceEEEE
Confidence 489999998 446778899999887677777777766555443 33221223233332221 112346999985
Q ss_pred ccccCCCCCHHHHHHHHHHhcCCCcEEEEEecc
Q 016921 233 MESGEHMPDKSKFVSELARVTAPAGTIIIVTWC 265 (380)
Q Consensus 233 ~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~~~ 265 (380)
.-. ...+.+..+.|+++|+++.....
T Consensus 218 ~vG-------~~~~~~~l~~l~~~G~lv~ig~~ 243 (326)
T COG0604 218 TVG-------GDTFAASLAALAPGGRLVSIGAL 243 (326)
T ss_pred CCC-------HHHHHHHHHHhccCCEEEEEecC
Confidence 422 45677899999999999987653
No 377
>PRK07109 short chain dehydrogenase; Provisional
Probab=84.84 E-value=17 Score=34.25 Aligned_cols=75 Identities=23% Similarity=0.153 Sum_probs=50.5
Q ss_pred CCEEEEECCCcChHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-C---------CCC
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-F---------PDG 225 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~---~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-~---------~~~ 225 (380)
+.+||=.|+ +|.++..+++.+ |.+|+.++.++..++...+.+...+ .++.++.+|+.+.. . .-+
T Consensus 8 ~k~vlITGa-s~gIG~~la~~la~~G~~Vvl~~R~~~~l~~~~~~l~~~g--~~~~~v~~Dv~d~~~v~~~~~~~~~~~g 84 (334)
T PRK07109 8 RQVVVITGA-SAGVGRATARAFARRGAKVVLLARGEEGLEALAAEIRAAG--GEALAVVADVADAEAVQAAADRAEEELG 84 (334)
T ss_pred CCEEEEECC-CCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcC--CcEEEEEecCCCHHHHHHHHHHHHHHCC
Confidence 566777774 555666665544 7899999999887776666555444 46888899987642 0 124
Q ss_pred CccEEEecccc
Q 016921 226 QFDLVWSMESG 236 (380)
Q Consensus 226 ~fD~V~~~~~l 236 (380)
.+|+++.+...
T Consensus 85 ~iD~lInnAg~ 95 (334)
T PRK07109 85 PIDTWVNNAMV 95 (334)
T ss_pred CCCEEEECCCc
Confidence 78998876544
No 378
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=84.79 E-value=12 Score=35.18 Aligned_cols=96 Identities=16% Similarity=0.137 Sum_probs=61.2
Q ss_pred CCCEEEEECC--CcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEc-CCCC-C-CCCCCCccEEEe
Q 016921 158 RPKNVVDVGC--GIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVG-DALQ-Q-PFPDGQFDLVWS 232 (380)
Q Consensus 158 ~~~~vLDiGc--GtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~-d~~~-~-~~~~~~fD~V~~ 232 (380)
++.+||=.|+ |.|..+..+++..|.+|++++.+++..+.+++.+ |...-+..... +..+ + ....+.+|+|+-
T Consensus 151 ~g~~VlI~Ga~G~vG~~aiqlAk~~G~~Vi~~~~~~~~~~~~~~~l---Ga~~vi~~~~~~~~~~~i~~~~~~gvd~v~d 227 (338)
T cd08295 151 KGETVFVSAASGAVGQLVGQLAKLKGCYVVGSAGSDEKVDLLKNKL---GFDDAFNYKEEPDLDAALKRYFPNGIDIYFD 227 (338)
T ss_pred CCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhc---CCceeEEcCCcccHHHHHHHhCCCCcEEEEE
Confidence 4889998885 4677888888888999999999988777665422 32110111111 1110 0 011246888874
Q ss_pred ccccCCCCCHHHHHHHHHHhcCCCcEEEEEe
Q 016921 233 MESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 233 ~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~ 263 (380)
.. . ...+..+.+.|+++|.++...
T Consensus 228 ~~-----g--~~~~~~~~~~l~~~G~iv~~G 251 (338)
T cd08295 228 NV-----G--GKMLDAVLLNMNLHGRIAACG 251 (338)
T ss_pred CC-----C--HHHHHHHHHHhccCcEEEEec
Confidence 32 1 256788999999999988764
No 379
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=84.77 E-value=1.3 Score=43.38 Aligned_cols=106 Identities=17% Similarity=0.179 Sum_probs=72.8
Q ss_pred CCCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC-------CCCCCCccE
Q 016921 158 RPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ-------PFPDGQFDL 229 (380)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-------~~~~~~fD~ 229 (380)
.+.++|-||-|.|.+...+...+ ..++++++++|.|+..|++.+.-..- .+..+...|..+. .-.+..||+
T Consensus 295 ~~~~~lvvg~ggG~l~sfl~~~~p~~~i~~ve~dP~~l~va~q~f~f~q~-~r~~V~i~dGl~~~~~~~k~~~~~~~~dv 373 (482)
T KOG2352|consen 295 TGGKQLVVGLGGGGLPSFLHMSLPKFQITAVEIDPEMLEVATQYFGFMQS-DRNKVHIADGLDFLQRTAKSQQEDICPDV 373 (482)
T ss_pred ccCcEEEEecCCCccccceeeecCccceeEEEEChhHhhccHhhhchhhh-hhhhhhHhhchHHHHHHhhccccccCCcE
Confidence 36678999999999998887777 58999999999999999987632211 1233333343221 124567998
Q ss_pred EEec----cccCCCCC------HHHHHHHHHHhcCCCcEEEEEecc
Q 016921 230 VWSM----ESGEHMPD------KSKFVSELARVTAPAGTIIIVTWC 265 (380)
Q Consensus 230 V~~~----~~l~~~~~------~~~~l~~~~r~LkpgG~l~~~~~~ 265 (380)
+..- . .+.+.. .+.++..+...|.|-|.+++.-.+
T Consensus 374 l~~dvds~d-~~g~~~pp~~fva~~~l~~~k~~l~p~g~f~inlv~ 418 (482)
T KOG2352|consen 374 LMVDVDSKD-SHGMQCPPPAFVAQVALQPVKMILPPRGMFIINLVT 418 (482)
T ss_pred EEEECCCCC-cccCcCCchHHHHHHHHHHHhhccCccceEEEEEec
Confidence 8752 2 222221 156888999999999999887643
No 380
>PRK06181 short chain dehydrogenase; Provisional
Probab=84.64 E-value=9.2 Score=34.33 Aligned_cols=75 Identities=19% Similarity=0.141 Sum_probs=48.4
Q ss_pred CEEEEECCCcChHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-----C-----CCCC
Q 016921 160 KNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-----F-----PDGQ 226 (380)
Q Consensus 160 ~~vLDiGcGtG~~~~~l~~~~---~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~-----~~~~ 226 (380)
.+||=.| |+|.++..+++.+ +.+|++++.++...+...+.+...+ .++.++.+|+.+.. + .-+.
T Consensus 2 ~~vlVtG-asg~iG~~la~~l~~~g~~Vi~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~ 78 (263)
T PRK06181 2 KVVIITG-ASEGIGRALAVRLARAGAQLVLAARNETRLASLAQELADHG--GEALVVPTDVSDAEACERLIEAAVARFGG 78 (263)
T ss_pred CEEEEec-CCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 3567555 5566666666554 7899999999876665554444333 46888889987642 0 0136
Q ss_pred ccEEEeccccC
Q 016921 227 FDLVWSMESGE 237 (380)
Q Consensus 227 fD~V~~~~~l~ 237 (380)
.|.|+......
T Consensus 79 id~vi~~ag~~ 89 (263)
T PRK06181 79 IDILVNNAGIT 89 (263)
T ss_pred CCEEEECCCcc
Confidence 89988765443
No 381
>KOG0821 consensus Predicted ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=84.62 E-value=9.2 Score=33.56 Aligned_cols=75 Identities=21% Similarity=0.267 Sum_probs=53.2
Q ss_pred HHHHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCC
Q 016921 139 VRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDAL 218 (380)
Q Consensus 139 ~~~~~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~ 218 (380)
.++.+++++.++.-. ..-|.+||.|.|+.+..+.+....++..+++++..+.-.+-..+.. +.+..++.+|+.
T Consensus 36 ~~lT~KIvK~A~~~~-----~~~v~eIgPgpggitR~il~a~~~RL~vVE~D~RFip~LQ~L~EAa--~~~~~IHh~D~L 108 (326)
T KOG0821|consen 36 LRLTDKIVKKAGNLT-----NAYVYEIGPGPGGITRSILNADVARLLVVEKDTRFIPGLQMLSEAA--PGKLRIHHGDVL 108 (326)
T ss_pred hHHHHHHHHhccccc-----cceeEEecCCCCchhHHHHhcchhheeeeeeccccChHHHHHhhcC--CcceEEeccccc
Confidence 346666777666433 6789999999999999998875467788888777666555444322 357788888876
Q ss_pred CC
Q 016921 219 QQ 220 (380)
Q Consensus 219 ~~ 220 (380)
..
T Consensus 109 R~ 110 (326)
T KOG0821|consen 109 RF 110 (326)
T ss_pred ee
Confidence 53
No 382
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=84.47 E-value=14 Score=35.04 Aligned_cols=93 Identities=25% Similarity=0.175 Sum_probs=58.1
Q ss_pred CCCEEEEECCC-cChHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC--------C-CCCCC
Q 016921 158 RPKNVVDVGCG-IGGSSRYLAKKFGA-KCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ--------P-FPDGQ 226 (380)
Q Consensus 158 ~~~~vLDiGcG-tG~~~~~l~~~~~~-~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--------~-~~~~~ 226 (380)
++.+||=.|+| .|..+..+++..|. +|++++.++...+.+++ .|.. .++..+-... . .....
T Consensus 177 ~g~~vlI~g~g~vG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~----~g~~---~vi~~~~~~~~~~~~~i~~~~~~~~ 249 (361)
T cd08231 177 AGDTVVVQGAGPLGLYAVAAAKLAGARRVIVIDGSPERLELARE----FGAD---ATIDIDELPDPQRRAIVRDITGGRG 249 (361)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH----cCCC---eEEcCcccccHHHHHHHHHHhCCCC
Confidence 47788888865 45566677777788 99999998877665543 2321 1111111100 0 12346
Q ss_pred ccEEEeccccCCCCCHHHHHHHHHHhcCCCcEEEEEe
Q 016921 227 FDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 227 fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~ 263 (380)
+|+|+-... ....+....+.|+++|+++...
T Consensus 250 ~d~vid~~g------~~~~~~~~~~~l~~~G~~v~~g 280 (361)
T cd08231 250 ADVVIEASG------HPAAVPEGLELLRRGGTYVLVG 280 (361)
T ss_pred CcEEEECCC------ChHHHHHHHHHhccCCEEEEEc
Confidence 898875321 1346788899999999998764
No 383
>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional
Probab=84.26 E-value=14 Score=33.12 Aligned_cols=102 Identities=15% Similarity=0.075 Sum_probs=61.6
Q ss_pred CCEEEEECCCc-ChHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC----------CCC
Q 016921 159 PKNVVDVGCGI-GGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP----------FPD 224 (380)
Q Consensus 159 ~~~vLDiGcGt-G~~~~~l~~~~---~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~----------~~~ 224 (380)
+..+|=.|+++ +.++..+++++ |++|+.++.+....+..++...+.+ .+.++.+|+.+.. -.-
T Consensus 10 ~k~~lItGas~g~GIG~a~a~~la~~G~~v~l~~r~~~~~~~~~~~~~~~~---~~~~~~~D~~~~~~v~~~~~~~~~~~ 86 (258)
T PRK07533 10 GKRGLVVGIANEQSIAWGCARAFRALGAELAVTYLNDKARPYVEPLAEELD---APIFLPLDVREPGQLEAVFARIAEEW 86 (258)
T ss_pred CCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCChhhHHHHHHHHHhhc---cceEEecCcCCHHHHHHHHHHHHHHc
Confidence 67899999876 36666666655 7899998888654333333332221 3456778887631 012
Q ss_pred CCccEEEeccccCC-------CC--C---HHH-----------HHHHHHHhcCCCcEEEEEe
Q 016921 225 GQFDLVWSMESGEH-------MP--D---KSK-----------FVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 225 ~~fD~V~~~~~l~~-------~~--~---~~~-----------~l~~~~r~LkpgG~l~~~~ 263 (380)
+..|+++.+..+.. +. + ... +.+.+...++.+|.++...
T Consensus 87 g~ld~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~~p~m~~~g~Ii~is 148 (258)
T PRK07533 87 GRLDFLLHSIAFAPKEDLHGRVVDCSREGFALAMDVSCHSFIRMARLAEPLMTNGGSLLTMS 148 (258)
T ss_pred CCCCEEEEcCccCCcccccCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHhccCCEEEEEe
Confidence 57899887655432 11 1 111 3456677777788876654
No 384
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=84.12 E-value=4.9 Score=37.32 Aligned_cols=89 Identities=20% Similarity=0.228 Sum_probs=53.9
Q ss_pred CCCEEEEECCC-cChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEEecccc
Q 016921 158 RPKNVVDVGCG-IGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESG 236 (380)
Q Consensus 158 ~~~~vLDiGcG-tG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l 236 (380)
.+.+|+=||.| .|..+...+...|++|+++|.++...+.++. .| ..+. +..++.-.-..+|+|+..-
T Consensus 151 ~g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~~~~~~~~~----~G----~~~~--~~~~l~~~l~~aDiVI~t~-- 218 (296)
T PRK08306 151 HGSNVLVLGFGRTGMTLARTLKALGANVTVGARKSAHLARITE----MG----LSPF--HLSELAEEVGKIDIIFNTI-- 218 (296)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH----cC----Ceee--cHHHHHHHhCCCCEEEECC--
Confidence 47899999998 4555555555558999999999876554432 22 2222 1112211124689998742
Q ss_pred CCCCCHHHHHHHHHHhcCCCcEEEEE
Q 016921 237 EHMPDKSKFVSELARVTAPAGTIIIV 262 (380)
Q Consensus 237 ~~~~~~~~~l~~~~r~LkpgG~l~~~ 262 (380)
+. .-+-++..+.++||+.++-.
T Consensus 219 ---p~-~~i~~~~l~~~~~g~vIIDl 240 (296)
T PRK08306 219 ---PA-LVLTKEVLSKMPPEALIIDL 240 (296)
T ss_pred ---Ch-hhhhHHHHHcCCCCcEEEEE
Confidence 11 12345677889998866644
No 385
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=84.10 E-value=3.4 Score=39.47 Aligned_cols=107 Identities=18% Similarity=0.206 Sum_probs=72.0
Q ss_pred CCCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcC-CCCCeEEEEcCCCCCC--------------
Q 016921 158 RPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARG-LADKVSFQVGDALQQP-------------- 221 (380)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~-~~~v~giD~s~~~~~~a~~~~~~~~-~~~~v~~~~~d~~~~~-------------- 221 (380)
.+.++||.+|+.+.....+++.+ ..+--|+++..+.+..+.......+ ......+..+|+...+
T Consensus 180 d~v~~ld~~~~~~~~~~~y~Ei~rv~kpGG~~i~~e~i~~~~~~~~~~~~~~i~~~i~~gd~~~~~~~~~d~~~~~~~~~ 259 (364)
T KOG1269|consen 180 DGVRFLEVVCHAPDLEKVYAEIYRVLKPGGLFIVKEWIKTAKLKKPNSEHVDILLEIEGGDALPAETFNTDVFDLLKSFG 259 (364)
T ss_pred CcEEEEeecccCCcHHHHHHHHhcccCCCceEEeHHHHHhhhccCCCcccccccCceeccccccceeccccHHHHHhhcc
Confidence 36799999999999999999887 4566678887777766554432211 1123444544443211
Q ss_pred ---------------CCCCCccEEEeccccCCCCCHHHHHHHHHHhcCCCcEEEEEeccCC
Q 016921 222 ---------------FPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHR 267 (380)
Q Consensus 222 ---------------~~~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~ 267 (380)
++...+|. ..++-|+.+...++......++|+|.+++.+....
T Consensus 260 ~~~~~~~~dl~~~~s~~w~~~~~---~~~~~~~~~~~~~f~~~~~~~~~~~~v~~~e~~~~ 317 (364)
T KOG1269|consen 260 FEHLKLEKDLALKSSFPWNTPLT---RDTITHWQDKSALFRGRVATLKPGGKVLILEYIRG 317 (364)
T ss_pred chhhhhcccccCCCccccccccc---hhheeecccccHHHHhHhhccCcCceEEehhhcCc
Confidence 12233443 45666777778899999999999999999886543
No 386
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=84.06 E-value=16 Score=32.44 Aligned_cols=78 Identities=21% Similarity=0.149 Sum_probs=51.9
Q ss_pred CCEEEEECCCcChHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-----C-----CCC
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-----F-----PDG 225 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~---~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~-----~~~ 225 (380)
+.+||=.| |+|.++..+++.+ |.+|++++.++...+.........+ .++.++.+|+.+.. + ..+
T Consensus 4 ~~~vlItG-~sg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 80 (258)
T PRK12429 4 GKVALVTG-AASGIGLEIALALAKEGAKVVIADLNDEAAAAAAEALQKAG--GKAIGVAMDVTDEEAINAGIDYAVETFG 80 (258)
T ss_pred CCEEEEEC-CCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 45677555 5677777777765 7899999999887666555444333 46888899987631 0 114
Q ss_pred CccEEEeccccCCC
Q 016921 226 QFDLVWSMESGEHM 239 (380)
Q Consensus 226 ~fD~V~~~~~l~~~ 239 (380)
.+|+|+......+.
T Consensus 81 ~~d~vi~~a~~~~~ 94 (258)
T PRK12429 81 GVDILVNNAGIQHV 94 (258)
T ss_pred CCCEEEECCCCCCC
Confidence 68998876654433
No 387
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=83.95 E-value=13 Score=37.79 Aligned_cols=78 Identities=13% Similarity=0.095 Sum_probs=49.1
Q ss_pred CCCEEEEECCCcChHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHc-----C--CCCCeEEEEcCCCCCC-C--CC
Q 016921 158 RPKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAAR-----G--LADKVSFQVGDALQQP-F--PD 224 (380)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~---~~~v~giD~s~~~~~~a~~~~~~~-----~--~~~~v~~~~~d~~~~~-~--~~ 224 (380)
.+.+||=.|+ +|.++..+++++ |.+|++++.+...+....+.+... + ...++.++.+|+.+.. + .-
T Consensus 79 ~gKvVLVTGA-TGgIG~aLAr~LLk~G~~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~esI~~aL 157 (576)
T PLN03209 79 DEDLAFVAGA-TGKVGSRTVRELLKLGFRVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPDQIGPAL 157 (576)
T ss_pred CCCEEEEECC-CCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCCHHHHHHHh
Confidence 4667776664 566777766655 789999999887665443332221 1 1135889999998742 1 11
Q ss_pred CCccEEEecccc
Q 016921 225 GQFDLVWSMESG 236 (380)
Q Consensus 225 ~~fD~V~~~~~l 236 (380)
+..|+|++....
T Consensus 158 ggiDiVVn~AG~ 169 (576)
T PLN03209 158 GNASVVICCIGA 169 (576)
T ss_pred cCCCEEEEcccc
Confidence 468988876543
No 388
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=83.62 E-value=26 Score=33.45 Aligned_cols=94 Identities=22% Similarity=0.242 Sum_probs=59.8
Q ss_pred CCCEEEEECCC-cChHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEc-CCC-CC-----CCCCCCcc
Q 016921 158 RPKNVVDVGCG-IGGSSRYLAKKFGA-KCQGITLSPVQAQRANALAAARGLADKVSFQVG-DAL-QQ-----PFPDGQFD 228 (380)
Q Consensus 158 ~~~~vLDiGcG-tG~~~~~l~~~~~~-~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~-d~~-~~-----~~~~~~fD 228 (380)
++.+||=+|+| .|..+..+++..|+ .|+++|.++..++.+++ .|.. .++.. +.. +. ....+.+|
T Consensus 186 ~g~~VlV~G~G~vG~~a~~~ak~~G~~~vi~~~~~~~~~~~~~~----lGa~---~~i~~~~~~~~~~~~v~~~~~~g~d 258 (368)
T cd08300 186 PGSTVAVFGLGAVGLAVIQGAKAAGASRIIGIDINPDKFELAKK----FGAT---DCVNPKDHDKPIQQVLVEMTDGGVD 258 (368)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH----cCCC---EEEcccccchHHHHHHHHHhCCCCc
Confidence 48899988876 46666777777787 79999999998887754 2321 11211 110 00 01123688
Q ss_pred EEEeccccCCCCCHHHHHHHHHHhcCCC-cEEEEEec
Q 016921 229 LVWSMESGEHMPDKSKFVSELARVTAPA-GTIIIVTW 264 (380)
Q Consensus 229 ~V~~~~~l~~~~~~~~~l~~~~r~Lkpg-G~l~~~~~ 264 (380)
+|+-... . ...+..+.+.|+++ |++++...
T Consensus 259 ~vid~~g-----~-~~~~~~a~~~l~~~~G~~v~~g~ 289 (368)
T cd08300 259 YTFECIG-----N-VKVMRAALEACHKGWGTSVIIGV 289 (368)
T ss_pred EEEECCC-----C-hHHHHHHHHhhccCCCeEEEEcc
Confidence 8875321 1 34678888999997 98887654
No 389
>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=83.50 E-value=16 Score=33.88 Aligned_cols=89 Identities=17% Similarity=0.141 Sum_probs=56.9
Q ss_pred CCCEEEEECCC-cChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEEecccc
Q 016921 158 RPKNVVDVGCG-IGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESG 236 (380)
Q Consensus 158 ~~~~vLDiGcG-tG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l 236 (380)
++.+||=.|+| .|..+..+++..+.++++++.+....+.+++ .|. ..++ +.... +.+.+|+++....
T Consensus 167 ~~~~vlV~g~g~vg~~~~~la~~~g~~v~~~~~~~~~~~~~~~----~g~---~~~~--~~~~~--~~~~vD~vi~~~~- 234 (329)
T cd08298 167 PGQRLGLYGFGASAHLALQIARYQGAEVFAFTRSGEHQELARE----LGA---DWAG--DSDDL--PPEPLDAAIIFAP- 234 (329)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCeEEEEcCChHHHHHHHH----hCC---cEEe--ccCcc--CCCcccEEEEcCC-
Confidence 37778778776 3445555666668999999999876666633 232 1111 11111 2356888764321
Q ss_pred CCCCCHHHHHHHHHHhcCCCcEEEEEe
Q 016921 237 EHMPDKSKFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 237 ~~~~~~~~~l~~~~r~LkpgG~l~~~~ 263 (380)
....++.+.+.|+++|.++...
T Consensus 235 -----~~~~~~~~~~~l~~~G~~v~~g 256 (329)
T cd08298 235 -----VGALVPAALRAVKKGGRVVLAG 256 (329)
T ss_pred -----cHHHHHHHHHHhhcCCEEEEEc
Confidence 1247889999999999999765
No 390
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=83.39 E-value=6.7 Score=37.34 Aligned_cols=95 Identities=17% Similarity=0.153 Sum_probs=57.0
Q ss_pred CCCEEEEECCC-cChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEE-cCCCCCCCCCCCccEEEeccc
Q 016921 158 RPKNVVDVGCG-IGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQV-GDALQQPFPDGQFDLVWSMES 235 (380)
Q Consensus 158 ~~~~vLDiGcG-tG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~-~d~~~~~~~~~~fD~V~~~~~ 235 (380)
++.+||=+|+| .|..+..+++..|.++++++.+++....+.+. .|.. .++. .+...+.-....+|+|+-...
T Consensus 180 ~g~~vlV~G~G~vG~~av~~Ak~~G~~vi~~~~~~~~~~~~~~~---~Ga~---~~i~~~~~~~~~~~~~~~D~vid~~g 253 (357)
T PLN02514 180 SGLRGGILGLGGVGHMGVKIAKAMGHHVTVISSSDKKREEALEH---LGAD---DYLVSSDAAEMQEAADSLDYIIDTVP 253 (357)
T ss_pred CCCeEEEEcccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHh---cCCc---EEecCCChHHHHHhcCCCcEEEECCC
Confidence 47788888766 56677778887788899998887665444332 2321 1111 110111000124787764321
Q ss_pred cCCCCCHHHHHHHHHHhcCCCcEEEEEec
Q 016921 236 GEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (380)
Q Consensus 236 l~~~~~~~~~l~~~~r~LkpgG~l~~~~~ 264 (380)
....+..+.+.|++||+++....
T Consensus 254 ------~~~~~~~~~~~l~~~G~iv~~G~ 276 (357)
T PLN02514 254 ------VFHPLEPYLSLLKLDGKLILMGV 276 (357)
T ss_pred ------chHHHHHHHHHhccCCEEEEECC
Confidence 12467788899999999888653
No 391
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=83.15 E-value=14 Score=38.04 Aligned_cols=89 Identities=13% Similarity=0.089 Sum_probs=57.1
Q ss_pred CEEEEECCCcChHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC----CCCCCccEEEe
Q 016921 160 KNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP----FPDGQFDLVWS 232 (380)
Q Consensus 160 ~~vLDiGcGtG~~~~~l~~~~---~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~----~~~~~fD~V~~ 232 (380)
.+|+=+|+| .++..+++.. +..++.+|.+++.++.+++ . ...++.+|+.+.. ..-++.|.+++
T Consensus 401 ~~vII~G~G--r~G~~va~~L~~~g~~vvvID~d~~~v~~~~~----~----g~~v~~GDat~~~~L~~agi~~A~~vv~ 470 (601)
T PRK03659 401 PQVIIVGFG--RFGQVIGRLLMANKMRITVLERDISAVNLMRK----Y----GYKVYYGDATQLELLRAAGAEKAEAIVI 470 (601)
T ss_pred CCEEEecCc--hHHHHHHHHHHhCCCCEEEEECCHHHHHHHHh----C----CCeEEEeeCCCHHHHHhcCCccCCEEEE
Confidence 456666655 4555555433 7899999999999887764 2 3678999998742 12346777766
Q ss_pred ccccCCCCCHHH--HHHHHHHhcCCCcEEEEEe
Q 016921 233 MESGEHMPDKSK--FVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 233 ~~~l~~~~~~~~--~l~~~~r~LkpgG~l~~~~ 263 (380)
.. +|.+. .+-...|.+.|...++.-.
T Consensus 471 ~~-----~d~~~n~~i~~~~r~~~p~~~IiaRa 498 (601)
T PRK03659 471 TC-----NEPEDTMKIVELCQQHFPHLHILARA 498 (601)
T ss_pred Ee-----CCHHHHHHHHHHHHHHCCCCeEEEEe
Confidence 42 33332 3334556677888877754
No 392
>PRK05854 short chain dehydrogenase; Provisional
Probab=83.13 E-value=23 Score=32.96 Aligned_cols=77 Identities=18% Similarity=0.101 Sum_probs=50.6
Q ss_pred CCEEEEECCCcChHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC----------CCCC
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP----------FPDG 225 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~---~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~----------~~~~ 225 (380)
+.++|=.|++ |.++..+++.+ |++|+.++.+..-.+.+.+.+.......++.++.+|+.+.. -..+
T Consensus 14 gk~~lITGas-~GIG~~~a~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dl~d~~sv~~~~~~~~~~~~ 92 (313)
T PRK05854 14 GKRAVVTGAS-DGLGLGLARRLAAAGAEVILPVRNRAKGEAAVAAIRTAVPDAKLSLRALDLSSLASVAALGEQLRAEGR 92 (313)
T ss_pred CCEEEEeCCC-ChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEecCCCHHHHHHHHHHHHHhCC
Confidence 6677777765 55566665554 88999999988776666555543322236888999987742 1125
Q ss_pred CccEEEecccc
Q 016921 226 QFDLVWSMESG 236 (380)
Q Consensus 226 ~fD~V~~~~~l 236 (380)
..|+++.+...
T Consensus 93 ~iD~li~nAG~ 103 (313)
T PRK05854 93 PIHLLINNAGV 103 (313)
T ss_pred CccEEEECCcc
Confidence 68998876544
No 393
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=83.08 E-value=6.8 Score=37.02 Aligned_cols=93 Identities=19% Similarity=0.132 Sum_probs=59.6
Q ss_pred CCCEEEEECCC-cChHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC-----C-CCCCCccE
Q 016921 158 RPKNVVDVGCG-IGGSSRYLAKKFGA-KCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ-----P-FPDGQFDL 229 (380)
Q Consensus 158 ~~~~vLDiGcG-tG~~~~~l~~~~~~-~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-----~-~~~~~fD~ 229 (380)
++.+||=.|+| .|..+..+++..|. .++++|.++...+.+++ .|.. .++..+-.+. . .....+|+
T Consensus 166 ~g~~vlI~g~g~iG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~----~g~~---~~v~~~~~~~~~~i~~~~~~~~~d~ 238 (351)
T cd08285 166 LGDTVAVFGIGPVGLMAVAGARLRGAGRIIAVGSRPNRVELAKE----YGAT---DIVDYKNGDVVEQILKLTGGKGVDA 238 (351)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH----cCCc---eEecCCCCCHHHHHHHHhCCCCCcE
Confidence 48889888876 46667777777677 59999999887776654 2321 1111111111 0 12346898
Q ss_pred EEeccccCCCCCHHHHHHHHHHhcCCCcEEEEEe
Q 016921 230 VWSMESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 230 V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~ 263 (380)
|+-... . ...+.++.+.|+++|+++...
T Consensus 239 vld~~g-----~-~~~~~~~~~~l~~~G~~v~~g 266 (351)
T cd08285 239 VIIAGG-----G-QDTFEQALKVLKPGGTISNVN 266 (351)
T ss_pred EEECCC-----C-HHHHHHHHHHhhcCCEEEEec
Confidence 874321 1 356889999999999988764
No 394
>PLN02827 Alcohol dehydrogenase-like
Probab=82.92 E-value=5 Score=38.64 Aligned_cols=93 Identities=23% Similarity=0.314 Sum_probs=57.8
Q ss_pred CCCEEEEECCC-cChHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcC-----CCC-C-CCCCCCcc
Q 016921 158 RPKNVVDVGCG-IGGSSRYLAKKFGA-KCQGITLSPVQAQRANALAAARGLADKVSFQVGD-----ALQ-Q-PFPDGQFD 228 (380)
Q Consensus 158 ~~~~vLDiGcG-tG~~~~~l~~~~~~-~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d-----~~~-~-~~~~~~fD 228 (380)
++.+||=+|+| .|..+..+++..|. .|+++|.++...+.+++ .|.. .++... ... + ....+.+|
T Consensus 193 ~g~~VlV~G~G~vG~~~iqlak~~G~~~vi~~~~~~~~~~~a~~----lGa~---~~i~~~~~~~~~~~~v~~~~~~g~d 265 (378)
T PLN02827 193 KGSSVVIFGLGTVGLSVAQGAKLRGASQIIGVDINPEKAEKAKT----FGVT---DFINPNDLSEPIQQVIKRMTGGGAD 265 (378)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHH----cCCc---EEEcccccchHHHHHHHHHhCCCCC
Confidence 48899999876 36666677776676 58899999987777644 3321 111111 000 0 01123688
Q ss_pred EEEeccccCCCCCHHHHHHHHHHhcCCC-cEEEEEe
Q 016921 229 LVWSMESGEHMPDKSKFVSELARVTAPA-GTIIIVT 263 (380)
Q Consensus 229 ~V~~~~~l~~~~~~~~~l~~~~r~Lkpg-G~l~~~~ 263 (380)
+|+-... . ...+....+.|++| |++++..
T Consensus 266 ~vid~~G-----~-~~~~~~~l~~l~~g~G~iv~~G 295 (378)
T PLN02827 266 YSFECVG-----D-TGIATTALQSCSDGWGLTVTLG 295 (378)
T ss_pred EEEECCC-----C-hHHHHHHHHhhccCCCEEEEEC
Confidence 8874322 1 23577888999999 9998754
No 395
>KOG2912 consensus Predicted DNA methylase [Function unknown]
Probab=82.91 E-value=3.3 Score=38.30 Aligned_cols=96 Identities=11% Similarity=0.106 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCCE--EEEECCCcChHHHHHH-HHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCe
Q 016921 134 HRAAQVRMIEETLRFAGVSEDPTKRPKN--VVDVGCGIGGSSRYLA-KKFGAKCQGITLSPVQAQRANALAAARGLADKV 210 (380)
Q Consensus 134 ~~~~~~~~~~~ll~~~~~~~~~~~~~~~--vLDiGcGtG~~~~~l~-~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v 210 (380)
.+.-.-+.++.++..-... ++.. =+|||.|+--+--.+. ..++....++|++......|...+.+.++.+.+
T Consensus 81 nR~nYihwI~DLLss~q~~-----k~~i~~GiDIgtgasci~~llg~rq~n~~f~~teidd~s~~~a~snV~qn~lss~i 155 (419)
T KOG2912|consen 81 NRLNYIHWIEDLLSSQQSD-----KSTIRRGIDIGTGASCIYPLLGARQNNWYFLATEIDDMSFNYAKSNVEQNNLSSLI 155 (419)
T ss_pred cchhhHHHHHHHhhcccCC-----CcceeeeeeccCchhhhHHhhhchhccceeeeeeccccccchhhccccccccccce
Confidence 4445556777777644211 1222 4788776643322222 222678999999999999999999999988888
Q ss_pred EEEEcCCCCCC-------CCCCCccEEEecc
Q 016921 211 SFQVGDALQQP-------FPDGQFDLVWSME 234 (380)
Q Consensus 211 ~~~~~d~~~~~-------~~~~~fD~V~~~~ 234 (380)
.+++....+.- .++..||++.|+-
T Consensus 156 kvV~~~~~ktll~d~~~~~~e~~ydFcMcNP 186 (419)
T KOG2912|consen 156 KVVKVEPQKTLLMDALKEESEIIYDFCMCNP 186 (419)
T ss_pred eeEEecchhhcchhhhccCccceeeEEecCC
Confidence 88877553311 1244588887754
No 396
>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []. The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing
Probab=82.68 E-value=5.3 Score=36.28 Aligned_cols=63 Identities=16% Similarity=0.125 Sum_probs=41.2
Q ss_pred CCCEEEEECCCcChHHHHHHHHc------CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC
Q 016921 158 RPKNVVDVGCGIGGSSRYLAKKF------GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP 221 (380)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~------~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~ 221 (380)
+...++|+|||.|.++..+++.. ...++.||-...-... -.+.........+.=+..|+.++.
T Consensus 18 ~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~~R~K~-D~~~~~~~~~~~~~R~riDI~dl~ 86 (259)
T PF05206_consen 18 PDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRASNRHKA-DNKIRKDESEPKFERLRIDIKDLD 86 (259)
T ss_pred CCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCcccccc-hhhhhccCCCCceEEEEEEeeccc
Confidence 37799999999999999999876 2478999986543322 222322221124555666766653
No 397
>PRK09242 tropinone reductase; Provisional
Probab=82.44 E-value=32 Score=30.66 Aligned_cols=77 Identities=14% Similarity=0.082 Sum_probs=49.8
Q ss_pred CCEEEEECCCcChHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC----------CCCC
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP----------FPDG 225 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~---~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~----------~~~~ 225 (380)
+.++|=.|++ |.++..+++.+ |.+|+.++.+.+.++...+.+.......++.++.+|+.+.. -.-+
T Consensus 9 ~k~~lItGa~-~gIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g 87 (257)
T PRK09242 9 GQTALITGAS-KGIGLAIAREFLGLGADVLIVARDADALAQARDELAEEFPEREVHGLAADVSDDEDRRAILDWVEDHWD 87 (257)
T ss_pred CCEEEEeCCC-chHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhCCCCeEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 6778888864 44455555444 78999999988777665555543311246788889987631 0124
Q ss_pred CccEEEecccc
Q 016921 226 QFDLVWSMESG 236 (380)
Q Consensus 226 ~fD~V~~~~~l 236 (380)
.+|.|+.....
T Consensus 88 ~id~li~~ag~ 98 (257)
T PRK09242 88 GLHILVNNAGG 98 (257)
T ss_pred CCCEEEECCCC
Confidence 68998876654
No 398
>PRK06940 short chain dehydrogenase; Provisional
Probab=81.57 E-value=23 Score=32.25 Aligned_cols=98 Identities=20% Similarity=0.221 Sum_probs=61.1
Q ss_pred EEEEECCCcChHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-----C----CCCCccE
Q 016921 161 NVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-----F----PDGQFDL 229 (380)
Q Consensus 161 ~vLDiGcGtG~~~~~l~~~~--~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~----~~~~fD~ 229 (380)
.+|=-|+ |.++..+++.+ |.+|+.+|.++..++...+.+...+ .++.++.+|+.+.. + ..+.+|+
T Consensus 4 ~~lItGa--~gIG~~la~~l~~G~~Vv~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dv~d~~~i~~~~~~~~~~g~id~ 79 (275)
T PRK06940 4 VVVVIGA--GGIGQAIARRVGAGKKVLLADYNEENLEAAAKTLREAG--FDVSTQEVDVSSRESVKALAATAQTLGPVTG 79 (275)
T ss_pred EEEEECC--ChHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcC--CeEEEEEeecCCHHHHHHHHHHHHhcCCCCE
Confidence 4555554 46777777766 7899999998876665555544333 36778888987641 1 1256899
Q ss_pred EEeccccCCC-CCHH-----------HHHHHHHHhcCCCcEEEEE
Q 016921 230 VWSMESGEHM-PDKS-----------KFVSELARVTAPAGTIIIV 262 (380)
Q Consensus 230 V~~~~~l~~~-~~~~-----------~~l~~~~r~LkpgG~l~~~ 262 (380)
++.+..+... .++. .+++.+.+.++++|.+++.
T Consensus 80 li~nAG~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~g~iv~i 124 (275)
T PRK06940 80 LVHTAGVSPSQASPEAILKVDLYGTALVLEEFGKVIAPGGAGVVI 124 (275)
T ss_pred EEECCCcCCchhhHHHHHHHhhHHHHHHHHHHHHHHhhCCCEEEE
Confidence 8876655332 2222 2455666667666665443
No 399
>PRK06128 oxidoreductase; Provisional
Probab=81.35 E-value=24 Score=32.57 Aligned_cols=102 Identities=21% Similarity=0.202 Sum_probs=60.0
Q ss_pred CCEEEEECCCcChHHHHHHHHc---CCEEEEEeCCHH--HHHHHHHHHHHcCCCCCeEEEEcCCCCCC-----C-----C
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPV--QAQRANALAAARGLADKVSFQVGDALQQP-----F-----P 223 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~---~~~v~giD~s~~--~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~-----~ 223 (380)
+.+||=.|+ +|.++..+++.+ |.+|+.+..+.. ..+...+.+...+ .++.++.+|+.+.. + .
T Consensus 55 ~k~vlITGa-s~gIG~~~a~~l~~~G~~V~i~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~v~~~~~~~~~~ 131 (300)
T PRK06128 55 GRKALITGA-DSGIGRATAIAFAREGADIALNYLPEEEQDAAEVVQLIQAEG--RKAVALPGDLKDEAFCRQLVERAVKE 131 (300)
T ss_pred CCEEEEecC-CCcHHHHHHHHHHHcCCEEEEEeCCcchHHHHHHHHHHHHcC--CeEEEEecCCCCHHHHHHHHHHHHHH
Confidence 567888884 555666666555 788887766533 2233333333333 35778889987631 0 1
Q ss_pred CCCccEEEeccccCC----CCC-----H-----------HHHHHHHHHhcCCCcEEEEEe
Q 016921 224 DGQFDLVWSMESGEH----MPD-----K-----------SKFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 224 ~~~fD~V~~~~~l~~----~~~-----~-----------~~~l~~~~r~LkpgG~l~~~~ 263 (380)
-+..|+++.+..... +.+ + -.+++.+.+.++++|.++...
T Consensus 132 ~g~iD~lV~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~iv~~s 191 (300)
T PRK06128 132 LGGLDILVNIAGKQTAVKDIADITTEQFDATFKTNVYAMFWLCKAAIPHLPPGASIINTG 191 (300)
T ss_pred hCCCCEEEECCcccCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhcCcCCEEEEEC
Confidence 146899887665432 111 1 125566777778888877754
No 400
>PRK06701 short chain dehydrogenase; Provisional
Probab=81.33 E-value=27 Score=32.12 Aligned_cols=102 Identities=19% Similarity=0.145 Sum_probs=59.2
Q ss_pred CCEEEEECCCcChHHHHHHHHc---CCEEEEEeCCHH-HHHHHHHHHHHcCCCCCeEEEEcCCCCCC-----CC-----C
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPV-QAQRANALAAARGLADKVSFQVGDALQQP-----FP-----D 224 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~---~~~v~giD~s~~-~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~~-----~ 224 (380)
+.+||=.|+ +|.++..+++++ |.+|+.++.++. ..+.....+...+ .++.++.+|+.+.. +. -
T Consensus 46 ~k~iLItGa-sggIG~~la~~l~~~G~~V~l~~r~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~i~~~~ 122 (290)
T PRK06701 46 GKVALITGG-DSGIGRAVAVLFAKEGADIAIVYLDEHEDANETKQRVEKEG--VKCLLIPGDVSDEAFCKDAVEETVREL 122 (290)
T ss_pred CCEEEEeCC-CcHHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhcC--CeEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 567888885 455555555544 889999887643 2333333333333 36788899987632 10 1
Q ss_pred CCccEEEeccccCCC----CC----------------HHHHHHHHHHhcCCCcEEEEEe
Q 016921 225 GQFDLVWSMESGEHM----PD----------------KSKFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 225 ~~fD~V~~~~~l~~~----~~----------------~~~~l~~~~r~LkpgG~l~~~~ 263 (380)
+.+|+|+.+...... .+ .-.+++.+.+.++++|.+++..
T Consensus 123 ~~iD~lI~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~a~~~~~~~~g~iV~is 181 (290)
T PRK06701 123 GRLDILVNNAAFQYPQQSLEDITAEQLDKTFKTNIYSYFHMTKAALPHLKQGSAIINTG 181 (290)
T ss_pred CCCCEEEECCcccCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHhhCCeEEEEe
Confidence 468988865443221 11 1234556666677788777654
No 401
>COG2933 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=81.33 E-value=12 Score=33.89 Aligned_cols=89 Identities=15% Similarity=0.161 Sum_probs=63.0
Q ss_pred CCCCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEEecc
Q 016921 155 PTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSME 234 (380)
Q Consensus 155 ~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~ 234 (380)
...++...+|+|.-.|+|+-.|.++ +..|++||.-+-... .. . .+.|+....|-..+.-.....|..+|..
T Consensus 208 rL~~~M~avDLGAcPGGWTyqLVkr-~m~V~aVDng~ma~s----L~-d---tg~v~h~r~DGfk~~P~r~~idWmVCDm 278 (358)
T COG2933 208 RLAPGMWAVDLGACPGGWTYQLVKR-NMRVYAVDNGPMAQS----LM-D---TGQVTHLREDGFKFRPTRSNIDWMVCDM 278 (358)
T ss_pred hhcCCceeeecccCCCccchhhhhc-ceEEEEeccchhhhh----hh-c---ccceeeeeccCcccccCCCCCceEEeeh
Confidence 3456999999999999999999987 899999998663211 11 1 2467778888776632357789888753
Q ss_pred ccCCCCCHHHHHHHHHHhcCCC
Q 016921 235 SGEHMPDKSKFVSELARVTAPA 256 (380)
Q Consensus 235 ~l~~~~~~~~~l~~~~r~Lkpg 256 (380)
+ ..+.++-..+...|..|
T Consensus 279 V----EkP~rv~~li~~Wl~nG 296 (358)
T COG2933 279 V----EKPARVAALIAKWLVNG 296 (358)
T ss_pred h----cCcHHHHHHHHHHHHcc
Confidence 2 45666666677766544
No 402
>PF04072 LCM: Leucine carboxyl methyltransferase; InterPro: IPR007213 This entry represents a group of leucine carboxymethyltransferases which methylate the carboxyl group of leucine residues to form alpha-leucine ester residues. It includes LCTM1 which regulates the activity of serine/threonine phosphatase 2A (PP2A) through methylation of the C-terminal leucine residue of the catalytic subunit of PP2A [, , ]. This affects the heteromultimeric composition of PP2A which in turn affects protein recognition and substrate specificity. Like many other methyltransferases LCTM1 uses S-adenosylmethionine (SAM) as the methyl donor. LCTM1 contains the common SAM-dependent methyltransferase core fold, with various insertions and additions creating a specific PP2A binding site []. This entry also contains LCTM2, a homologue of LCTM1 which is not necessary for PP2A methylation and whose function is not clear.; GO: 0008168 methyltransferase activity; PDB: 2UYQ_A 2CKD_B 2UYO_A 2ZZK_B 2ZWA_B 2ZW9_B 1RJE_C 2OB2_B 1RJF_A 1RJD_A ....
Probab=81.32 E-value=6.7 Score=33.51 Aligned_cols=80 Identities=16% Similarity=0.219 Sum_probs=48.8
Q ss_pred CEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCC--CCCeEEEEcCCCCCC---------CCCCCc
Q 016921 160 KNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGL--ADKVSFQVGDALQQP---------FPDGQF 227 (380)
Q Consensus 160 ~~vLDiGcGtG~~~~~l~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~--~~~v~~~~~d~~~~~---------~~~~~f 227 (380)
..|+.+|||-=.....+.... +..++-+|. |++++.-++.+.+.+. +.+.+++..|+.+.. +..+..
T Consensus 80 ~qvV~LGaGlDTr~~Rl~~~~~~~~~~evD~-p~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~~~~~~L~~~g~~~~~p 158 (183)
T PF04072_consen 80 RQVVNLGAGLDTRAYRLDNPAGGVRWFEVDL-PEVIALKRRLLPESGARPPANYRYVPADLRDDSWIDALPKAGFDPDRP 158 (183)
T ss_dssp SEEEEET-TT--HHHHHHHTTTTEEEEEEE--HHHHHHHHHHHHHTHHHHHEESSEEES-TTSHHHHHHHHHCTT-TTSE
T ss_pred cEEEEcCCCCCchHHHhhccccceEEEEeCC-HHHHHHHHHHHHhCcccCCcceeEEeccccchhhHHHHHHhCCCCCCC
Confidence 389999999988888887754 567777777 5566666666555421 123567999988631 334455
Q ss_pred cEEEeccccCCCC
Q 016921 228 DLVWSMESGEHMP 240 (380)
Q Consensus 228 D~V~~~~~l~~~~ 240 (380)
-++++-+++.+++
T Consensus 159 tl~i~Egvl~Yl~ 171 (183)
T PF04072_consen 159 TLFIAEGVLMYLS 171 (183)
T ss_dssp EEEEEESSGGGS-
T ss_pred eEEEEcchhhcCC
Confidence 5677777788874
No 403
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=81.22 E-value=16 Score=34.47 Aligned_cols=122 Identities=17% Similarity=0.175 Sum_probs=77.4
Q ss_pred CCEEEEECCCcChHHHHHHHHcC-CEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC---CCCCCccEEEecc
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKFG-AKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP---FPDGQFDLVWSME 234 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~-~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~---~~~~~fD~V~~~~ 234 (380)
..+++|+=||.|.+..-+... | .-+.++|+++..++.-+.+.. ...+...|..... +....+|+++...
T Consensus 3 ~~~~idLFsG~GG~~lGf~~a-gf~~~~a~Eid~~a~~ty~~n~~------~~~~~~~di~~~~~~~~~~~~~DvligGp 75 (328)
T COG0270 3 KMKVIDLFAGIGGLSLGFEEA-GFEIVFANEIDPPAVATYKANFP------HGDIILGDIKELDGEALRKSDVDVLIGGP 75 (328)
T ss_pred CceEEeeccCCchHHHHHHhc-CCeEEEEEecCHHHHHHHHHhCC------CCceeechHhhcChhhccccCCCEEEeCC
Confidence 568999999999999888776 5 457789999998877666542 2455666766543 1112789998754
Q ss_pred ccCCC---------CCHH----HHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHHH
Q 016921 235 SGEHM---------PDKS----KFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTAD 301 (380)
Q Consensus 235 ~l~~~---------~~~~----~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (380)
-...+ .|+. -.+.++...++| .+++.|-... ++.. .....+.
T Consensus 76 PCQ~FS~aG~r~~~~D~R~~L~~~~~r~I~~~~P--~~fv~ENV~g---------------l~~~--------~~~~~~~ 130 (328)
T COG0270 76 PCQDFSIAGKRRGYDDPRGSLFLEFIRLIEQLRP--KFFVLENVKG---------------LLSS--------KGQTFDE 130 (328)
T ss_pred CCcchhhcCcccCCcCccceeeHHHHHHHHhhCC--CEEEEecCch---------------HHhc--------CchHHHH
Confidence 43333 2221 244566666778 6666663211 1111 1135678
Q ss_pred HHHHHHhCCCc
Q 016921 302 YVKLLQSLSLE 312 (380)
Q Consensus 302 ~~~ll~~aGf~ 312 (380)
+.+.|++.||.
T Consensus 131 i~~~L~~~GY~ 141 (328)
T COG0270 131 IKKELEELGYG 141 (328)
T ss_pred HHHHHHHcCCc
Confidence 88889999986
No 404
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=81.18 E-value=21 Score=36.36 Aligned_cols=88 Identities=18% Similarity=0.159 Sum_probs=54.8
Q ss_pred CEEEEECCCcChHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC----CCCCCccEEEe
Q 016921 160 KNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP----FPDGQFDLVWS 232 (380)
Q Consensus 160 ~~vLDiGcGtG~~~~~l~~~~---~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~----~~~~~fD~V~~ 232 (380)
.+|+=+||| .++..+++.. +..++.+|.+++..+.+++ .....+.+|+.+.. ..-+..|.+++
T Consensus 418 ~hiiI~G~G--~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~--------~g~~~i~GD~~~~~~L~~a~i~~a~~viv 487 (558)
T PRK10669 418 NHALLVGYG--RVGSLLGEKLLAAGIPLVVIETSRTRVDELRE--------RGIRAVLGNAANEEIMQLAHLDCARWLLL 487 (558)
T ss_pred CCEEEECCC--hHHHHHHHHHHHCCCCEEEEECCHHHHHHHHH--------CCCeEEEcCCCCHHHHHhcCccccCEEEE
Confidence 456666665 4555555544 6789999999998877764 24778999998742 22356786654
Q ss_pred ccccCCCCCH--HHHHHHHHHhcCCCcEEEEE
Q 016921 233 MESGEHMPDK--SKFVSELARVTAPAGTIIIV 262 (380)
Q Consensus 233 ~~~l~~~~~~--~~~l~~~~r~LkpgG~l~~~ 262 (380)
.- +|. ...+-...+...|...++.-
T Consensus 488 ~~-----~~~~~~~~iv~~~~~~~~~~~iiar 514 (558)
T PRK10669 488 TI-----PNGYEAGEIVASAREKRPDIEIIAR 514 (558)
T ss_pred Ec-----CChHHHHHHHHHHHHHCCCCeEEEE
Confidence 31 222 22233344556777766664
No 405
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=81.13 E-value=8.6 Score=36.97 Aligned_cols=94 Identities=20% Similarity=0.255 Sum_probs=56.5
Q ss_pred CCCEEEEECCC-cChHHHHHHHHcCCEEEEEeCCHHH-HHHHHHHHHHcCCCCCeEEEE-cCCCCCCCCCCCccEEEecc
Q 016921 158 RPKNVVDVGCG-IGGSSRYLAKKFGAKCQGITLSPVQ-AQRANALAAARGLADKVSFQV-GDALQQPFPDGQFDLVWSME 234 (380)
Q Consensus 158 ~~~~vLDiGcG-tG~~~~~l~~~~~~~v~giD~s~~~-~~~a~~~~~~~~~~~~v~~~~-~d~~~~~~~~~~fD~V~~~~ 234 (380)
++.+||=.|+| .|..+..+++..|++|++++.+++. .+.++ +.|.. .++. .+...+.-..+.+|+|+-..
T Consensus 178 ~g~~VlV~G~G~vG~~avq~Ak~~Ga~Vi~~~~~~~~~~~~a~----~lGa~---~~i~~~~~~~v~~~~~~~D~vid~~ 250 (375)
T PLN02178 178 SGKRLGVNGLGGLGHIAVKIGKAFGLRVTVISRSSEKEREAID----RLGAD---SFLVTTDSQKMKEAVGTMDFIIDTV 250 (375)
T ss_pred CCCEEEEEcccHHHHHHHHHHHHcCCeEEEEeCChHHhHHHHH----hCCCc---EEEcCcCHHHHHHhhCCCcEEEECC
Confidence 47888888886 4667777888778899999987654 33332 23321 1111 01001100012478877432
Q ss_pred ccCCCCCHHHHHHHHHHhcCCCcEEEEEec
Q 016921 235 SGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (380)
Q Consensus 235 ~l~~~~~~~~~l~~~~r~LkpgG~l~~~~~ 264 (380)
. ....+..+.+.|++||.++....
T Consensus 251 G------~~~~~~~~~~~l~~~G~iv~vG~ 274 (375)
T PLN02178 251 S------AEHALLPLFSLLKVSGKLVALGL 274 (375)
T ss_pred C------cHHHHHHHHHhhcCCCEEEEEcc
Confidence 1 12467888999999999987653
No 406
>PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases. The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A.
Probab=81.07 E-value=5.1 Score=37.03 Aligned_cols=75 Identities=19% Similarity=0.190 Sum_probs=45.9
Q ss_pred CCCcChHHHHHHHHc----CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEE----EEcCCCCCC-----CCCCCccEEEe
Q 016921 166 GCGIGGSSRYLAKKF----GAKCQGITLSPVQAQRANALAAARGLADKVSF----QVGDALQQP-----FPDGQFDLVWS 232 (380)
Q Consensus 166 GcGtG~~~~~l~~~~----~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~----~~~d~~~~~-----~~~~~fD~V~~ 232 (380)
-.|+|.++..+.+++ ..+++.+|.++..+-..++.+......+++.+ +.+|+.+.. +....+|+|+.
T Consensus 4 TGa~GSIGseL~rql~~~~p~~lil~d~~E~~l~~l~~~l~~~~~~~~v~~~~~~vigDvrd~~~l~~~~~~~~pdiVfH 83 (293)
T PF02719_consen 4 TGAGGSIGSELVRQLLRYGPKKLILFDRDENKLYELERELRSRFPDPKVRFEIVPVIGDVRDKERLNRIFEEYKPDIVFH 83 (293)
T ss_dssp ETTTSHHHHHHHHHHHCCB-SEEEEEES-HHHHHHHHHHCHHHC--TTCEEEEE--CTSCCHHHHHHHHTT--T-SEEEE
T ss_pred EccccHHHHHHHHHHHhcCCCeEEEeCCChhHHHHHHHHHhhcccccCcccccCceeecccCHHHHHHHHhhcCCCEEEE
Confidence 357889999888876 36899999999988888777643322234554 488887642 55668999999
Q ss_pred ccccCCCC
Q 016921 233 MESGEHMP 240 (380)
Q Consensus 233 ~~~l~~~~ 240 (380)
..++-|++
T Consensus 84 aAA~KhVp 91 (293)
T PF02719_consen 84 AAALKHVP 91 (293)
T ss_dssp ------HH
T ss_pred ChhcCCCC
Confidence 99999984
No 407
>PRK08339 short chain dehydrogenase; Provisional
Probab=80.98 E-value=33 Score=30.85 Aligned_cols=76 Identities=17% Similarity=0.178 Sum_probs=49.3
Q ss_pred CCEEEEECCCcChHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-----C----CCCC
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-----F----PDGQ 226 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~---~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~----~~~~ 226 (380)
+.++|=.|++. ..+..+++.+ |++|+.++.++..++...+.+.... ..++.++.+|+.+.. + .-+.
T Consensus 8 ~k~~lItGas~-gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~Dv~~~~~i~~~~~~~~~~g~ 85 (263)
T PRK08339 8 GKLAFTTASSK-GIGFGVARVLARAGADVILLSRNEENLKKAREKIKSES-NVDVSYIVADLTKREDLERTVKELKNIGE 85 (263)
T ss_pred CCEEEEeCCCC-cHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhc-CCceEEEEecCCCHHHHHHHHHHHHhhCC
Confidence 56778777654 4455555544 8899999999887766655543321 246888899988742 0 1246
Q ss_pred ccEEEecccc
Q 016921 227 FDLVWSMESG 236 (380)
Q Consensus 227 fD~V~~~~~l 236 (380)
+|+++.+...
T Consensus 86 iD~lv~nag~ 95 (263)
T PRK08339 86 PDIFFFSTGG 95 (263)
T ss_pred CcEEEECCCC
Confidence 8988866544
No 408
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=80.98 E-value=3.8 Score=38.75 Aligned_cols=92 Identities=20% Similarity=0.170 Sum_probs=59.1
Q ss_pred CCCEEEEECCC-cChHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC--------CCCCCc
Q 016921 158 RPKNVVDVGCG-IGGSSRYLAKKFGA-KCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP--------FPDGQF 227 (380)
Q Consensus 158 ~~~~vLDiGcG-tG~~~~~l~~~~~~-~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--------~~~~~f 227 (380)
++.+||=.|+| .|..+..+++..|. .|++++.++...+.+++ .|.. .++ |..+.. ...+.+
T Consensus 172 ~g~~vlI~g~g~vG~~a~q~a~~~G~~~v~~~~~~~~~~~~~~~----~ga~---~~i--~~~~~~~~~~l~~~~~~~~~ 242 (351)
T cd08233 172 PGDTALVLGAGPIGLLTILALKAAGASKIIVSEPSEARRELAEE----LGAT---IVL--DPTEVDVVAEVRKLTGGGGV 242 (351)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH----hCCC---EEE--CCCccCHHHHHHHHhCCCCC
Confidence 47888888865 45566667777687 89999999988777654 2321 111 111111 122458
Q ss_pred cEEEeccccCCCCCHHHHHHHHHHhcCCCcEEEEEec
Q 016921 228 DLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (380)
Q Consensus 228 D~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~~ 264 (380)
|+|+-.... ...++.+.+.|+++|.++....
T Consensus 243 d~vid~~g~------~~~~~~~~~~l~~~G~~v~~g~ 273 (351)
T cd08233 243 DVSFDCAGV------QATLDTAIDALRPRGTAVNVAI 273 (351)
T ss_pred CEEEECCCC------HHHHHHHHHhccCCCEEEEEcc
Confidence 988754321 2467888999999999887653
No 409
>cd05281 TDH Threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=80.97 E-value=5.9 Score=37.28 Aligned_cols=95 Identities=22% Similarity=0.254 Sum_probs=56.7
Q ss_pred CCCEEEEECCCc-ChHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCC---CCCCCCCCCccEEEe
Q 016921 158 RPKNVVDVGCGI-GGSSRYLAKKFGA-KCQGITLSPVQAQRANALAAARGLADKVSFQVGDA---LQQPFPDGQFDLVWS 232 (380)
Q Consensus 158 ~~~~vLDiGcGt-G~~~~~l~~~~~~-~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~---~~~~~~~~~fD~V~~ 232 (380)
++.+||-.|+|. |..+..+++..|. .|++++-++.-.+.+++ .+...-+.....+. .+. .+.+.+|+|+.
T Consensus 163 ~g~~vlV~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~-~~~~~vd~vld 237 (341)
T cd05281 163 SGKSVLITGCGPIGLMAIAVAKAAGASLVIASDPNPYRLELAKK----MGADVVINPREEDVVEVKSV-TDGTGVDVVLE 237 (341)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHH----hCcceeeCcccccHHHHHHH-cCCCCCCEEEE
Confidence 477787777763 6677777877777 78888877766655543 22210000001111 011 12356898875
Q ss_pred ccccCCCCCHHHHHHHHHHhcCCCcEEEEEe
Q 016921 233 MESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 233 ~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~ 263 (380)
.-. ....+.++.+.|+++|.++...
T Consensus 238 ~~g------~~~~~~~~~~~l~~~G~~v~~g 262 (341)
T cd05281 238 MSG------NPKAIEQGLKALTPGGRVSILG 262 (341)
T ss_pred CCC------CHHHHHHHHHHhccCCEEEEEc
Confidence 321 1345778899999999988754
No 410
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=80.62 E-value=32 Score=32.75 Aligned_cols=97 Identities=21% Similarity=0.270 Sum_probs=58.9
Q ss_pred CCCEEEEECCC-cChHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCC--CC-C-CCCCCCccEEE
Q 016921 158 RPKNVVDVGCG-IGGSSRYLAKKFGA-KCQGITLSPVQAQRANALAAARGLADKVSFQVGDA--LQ-Q-PFPDGQFDLVW 231 (380)
Q Consensus 158 ~~~~vLDiGcG-tG~~~~~l~~~~~~-~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~--~~-~-~~~~~~fD~V~ 231 (380)
++.+||=+|+| .|..+..+++..|. +|+++|.++...+.+++ .|...-+.....+. .+ + ....+.+|+|+
T Consensus 184 ~g~~vlV~G~g~vG~~~~~~a~~~G~~~Vi~~~~~~~~~~~~~~----~ga~~~i~~~~~~~~~~~~~~~~~~~g~d~vi 259 (365)
T cd08277 184 PGSTVAVFGLGAVGLSAIMGAKIAGASRIIGVDINEDKFEKAKE----FGATDFINPKDSDKPVSEVIREMTGGGVDYSF 259 (365)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH----cCCCcEeccccccchHHHHHHHHhCCCCCEEE
Confidence 48899988876 46666777777777 79999999988877754 23210011110000 00 0 01124688887
Q ss_pred eccccCCCCCHHHHHHHHHHhcCCC-cEEEEEec
Q 016921 232 SMESGEHMPDKSKFVSELARVTAPA-GTIIIVTW 264 (380)
Q Consensus 232 ~~~~l~~~~~~~~~l~~~~r~Lkpg-G~l~~~~~ 264 (380)
-... . ...+..+.+.|+++ |.+++...
T Consensus 260 d~~g-----~-~~~~~~~~~~l~~~~G~~v~~g~ 287 (365)
T cd08277 260 ECTG-----N-ADLMNEALESTKLGWGVSVVVGV 287 (365)
T ss_pred ECCC-----C-hHHHHHHHHhcccCCCEEEEEcC
Confidence 4321 1 34678888999886 99888654
No 411
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=80.26 E-value=8.6 Score=36.06 Aligned_cols=94 Identities=21% Similarity=0.209 Sum_probs=59.1
Q ss_pred CCCEEEEECCC-cChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC---CCCCCccEEEec
Q 016921 158 RPKNVVDVGCG-IGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP---FPDGQFDLVWSM 233 (380)
Q Consensus 158 ~~~~vLDiGcG-tG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~---~~~~~fD~V~~~ 233 (380)
++.+||=.|+| .|..+..+++..|.+++.++.++...+.+++ .|. -.++...-.++. .....+|+|+..
T Consensus 163 ~~~~vlV~g~g~iG~~~~~~a~~~G~~vi~~~~~~~~~~~~~~----~g~---~~~i~~~~~~~~~~~~~~~~~d~vi~~ 235 (333)
T cd08296 163 PGDLVAVQGIGGLGHLAVQYAAKMGFRTVAISRGSDKADLARK----LGA---HHYIDTSKEDVAEALQELGGAKLILAT 235 (333)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHH----cCC---cEEecCCCccHHHHHHhcCCCCEEEEC
Confidence 47889888865 4666677777778899999999887777643 232 111111111110 011347888742
Q ss_pred cccCCCCCHHHHHHHHHHhcCCCcEEEEEec
Q 016921 234 ESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (380)
Q Consensus 234 ~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~~ 264 (380)
.. ....+..+.+.|+++|.++....
T Consensus 236 ~g------~~~~~~~~~~~l~~~G~~v~~g~ 260 (333)
T cd08296 236 AP------NAKAISALVGGLAPRGKLLILGA 260 (333)
T ss_pred CC------chHHHHHHHHHcccCCEEEEEec
Confidence 11 13578889999999999887653
No 412
>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional
Probab=79.85 E-value=22 Score=31.90 Aligned_cols=104 Identities=15% Similarity=0.111 Sum_probs=60.5
Q ss_pred CCEEEEECCCc-ChHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC--------C--CC
Q 016921 159 PKNVVDVGCGI-GGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP--------F--PD 224 (380)
Q Consensus 159 ~~~vLDiGcGt-G~~~~~l~~~~---~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--------~--~~ 224 (380)
+.++|=.|++. +.++..+++.+ |++|+.++.+....+..++...+.. ..++.++..|+.+.. . .-
T Consensus 7 ~k~~lItGa~~s~GIG~aia~~la~~G~~v~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~Dv~d~~~v~~~~~~~~~~~ 85 (257)
T PRK08594 7 GKTYVVMGVANKRSIAWGIARSLHNAGAKLVFTYAGERLEKEVRELADTLE-GQESLLLPCDVTSDEEITACFETIKEEV 85 (257)
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEecCcccchHHHHHHHHHcC-CCceEEEecCCCCHHHHHHHHHHHHHhC
Confidence 67899999873 66677776665 7899888754321222222222221 146778889987641 0 12
Q ss_pred CCccEEEeccccCC-------CC--CHH--------------HHHHHHHHhcCCCcEEEEEe
Q 016921 225 GQFDLVWSMESGEH-------MP--DKS--------------KFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 225 ~~fD~V~~~~~l~~-------~~--~~~--------------~~l~~~~r~LkpgG~l~~~~ 263 (380)
+.+|+++.+-.+.. +. +.+ .+.+.+.+.++++|.++...
T Consensus 86 g~ld~lv~nag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~g~Iv~is 147 (257)
T PRK08594 86 GVIHGVAHCIAFANKEDLRGEFLETSRDGFLLAQNISAYSLTAVAREAKKLMTEGGSIVTLT 147 (257)
T ss_pred CCccEEEECcccCCCCcCCCccccCCHHHHHHHHhhhHHHHHHHHHHHHHhcccCceEEEEc
Confidence 67898886544321 11 111 13355667778888877654
No 413
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=79.63 E-value=14 Score=36.54 Aligned_cols=101 Identities=20% Similarity=0.213 Sum_probs=60.6
Q ss_pred HHHHHHHHHcCCCCCCCCCCCEEEEECCCc-ChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCC
Q 016921 140 RMIEETLRFAGVSEDPTKRPKNVVDVGCGI-GGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDAL 218 (380)
Q Consensus 140 ~~~~~ll~~~~~~~~~~~~~~~vLDiGcGt-G~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~ 218 (380)
..++.+++..+.. -.+.+|+=+|+|. |......+..+|++|+++|.++.....+.. .| ..+ .++.
T Consensus 239 s~~d~~~R~~~~~----LaGKtVgVIG~G~IGr~vA~rL~a~Ga~ViV~e~dp~~a~~A~~----~G----~~~--~~le 304 (476)
T PTZ00075 239 SLIDGIFRATDVM----IAGKTVVVCGYGDVGKGCAQALRGFGARVVVTEIDPICALQAAM----EG----YQV--VTLE 304 (476)
T ss_pred HHHHHHHHhcCCC----cCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhHHHHHh----cC----cee--ccHH
Confidence 3445555544322 2489999999995 444444444458999999988765433322 12 222 2222
Q ss_pred CCCCCCCCccEEEeccccCCCCCHHHHH-HHHHHhcCCCcEEEEEe
Q 016921 219 QQPFPDGQFDLVWSMESGEHMPDKSKFV-SELARVTAPAGTIIIVT 263 (380)
Q Consensus 219 ~~~~~~~~fD~V~~~~~l~~~~~~~~~l-~~~~r~LkpgG~l~~~~ 263 (380)
+. -...|+|++... .. .++ .+....+|||++|+-..
T Consensus 305 el---l~~ADIVI~atG-----t~-~iI~~e~~~~MKpGAiLINvG 341 (476)
T PTZ00075 305 DV---VETADIFVTATG-----NK-DIITLEHMRRMKNNAIVGNIG 341 (476)
T ss_pred HH---HhcCCEEEECCC-----cc-cccCHHHHhccCCCcEEEEcC
Confidence 22 146799987532 22 234 47888999999988864
No 414
>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function.; PDB: 2PY6_A.
Probab=79.33 E-value=6.4 Score=32.39 Aligned_cols=54 Identities=24% Similarity=0.384 Sum_probs=31.3
Q ss_pred EECCCcC--hHHHHHHH-Hc--CCEEEEEeCCHHHHHHHHHH--HHHcCCCCCeEEEEcCC
Q 016921 164 DVGCGIG--GSSRYLAK-KF--GAKCQGITLSPVQAQRANAL--AAARGLADKVSFQVGDA 217 (380)
Q Consensus 164 DiGcGtG--~~~~~l~~-~~--~~~v~giD~s~~~~~~a~~~--~~~~~~~~~v~~~~~d~ 217 (380)
|||++.| .....+.. .. +.+|+++|++|...+..+++ +........+++.....
T Consensus 1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l~~~~~~~l~~~~~~~~~~~~~~ 61 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKLKRNLNLALNDKDGEVEFHPYAV 61 (167)
T ss_dssp EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHHHHHH--HHHTTTSTTGGEEEE-S
T ss_pred CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHHhHHHHHHhcCCCceEEEEEeec
Confidence 8999999 55444432 22 67899999999999988888 54443222355555443
No 415
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=79.22 E-value=34 Score=32.55 Aligned_cols=94 Identities=17% Similarity=0.242 Sum_probs=59.1
Q ss_pred CCCEEEEECCC-cChHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCC--CCC-----CCCCCCcc
Q 016921 158 RPKNVVDVGCG-IGGSSRYLAKKFGA-KCQGITLSPVQAQRANALAAARGLADKVSFQVGDA--LQQ-----PFPDGQFD 228 (380)
Q Consensus 158 ~~~~vLDiGcG-tG~~~~~l~~~~~~-~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~--~~~-----~~~~~~fD 228 (380)
++.+||=.|+| .|..+..+++..|. +|+++|.+++..+.+++ .|. ..++..+- ... ....+.+|
T Consensus 187 ~g~~VlV~G~g~vG~~a~q~ak~~G~~~vi~~~~~~~~~~~~~~----~Ga---~~~i~~~~~~~~~~~~v~~~~~~~~d 259 (369)
T cd08301 187 KGSTVAIFGLGAVGLAVAEGARIRGASRIIGVDLNPSKFEQAKK----FGV---TEFVNPKDHDKPVQEVIAEMTGGGVD 259 (369)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH----cCC---ceEEcccccchhHHHHHHHHhCCCCC
Confidence 48899999876 46666777777777 79999999988877754 232 11121110 000 01123688
Q ss_pred EEEeccccCCCCCHHHHHHHHHHhcCCC-cEEEEEec
Q 016921 229 LVWSMESGEHMPDKSKFVSELARVTAPA-GTIIIVTW 264 (380)
Q Consensus 229 ~V~~~~~l~~~~~~~~~l~~~~r~Lkpg-G~l~~~~~ 264 (380)
+|+-... . ...+..+.+.+++| |++++...
T Consensus 260 ~vid~~G-----~-~~~~~~~~~~~~~~~g~~v~~g~ 290 (369)
T cd08301 260 YSFECTG-----N-IDAMISAFECVHDGWGVTVLLGV 290 (369)
T ss_pred EEEECCC-----C-hHHHHHHHHHhhcCCCEEEEECc
Confidence 7764321 1 34677788899996 99888654
No 416
>KOG1209 consensus 1-Acyl dihydroxyacetone phosphate reductase and related dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=79.19 E-value=12 Score=32.89 Aligned_cols=69 Identities=30% Similarity=0.360 Sum_probs=46.8
Q ss_pred CCCEEEEECCCcChHHHHHHHHc---CCEEEEEeCCHH-HHHHHHHHHHHcCCCCCeEEEEcCCCCC-----------CC
Q 016921 158 RPKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPV-QAQRANALAAARGLADKVSFQVGDALQQ-----------PF 222 (380)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~---~~~v~giD~s~~-~~~~a~~~~~~~~~~~~v~~~~~d~~~~-----------~~ 222 (380)
....||=.||..|..+..++.++ |+.|++.--+-+ |.+.+.+ .++.....|+.+. .+
T Consensus 6 ~~k~VlItgcs~GGIG~ala~ef~~~G~~V~AtaR~~e~M~~L~~~--------~gl~~~kLDV~~~~~V~~v~~evr~~ 77 (289)
T KOG1209|consen 6 QPKKVLITGCSSGGIGYALAKEFARNGYLVYATARRLEPMAQLAIQ--------FGLKPYKLDVSKPEEVVTVSGEVRAN 77 (289)
T ss_pred CCCeEEEeecCCcchhHHHHHHHHhCCeEEEEEccccchHhhHHHh--------hCCeeEEeccCChHHHHHHHHHHhhC
Confidence 36789999999999999999887 788888765433 3333322 2355566666542 24
Q ss_pred CCCCccEEEecc
Q 016921 223 PDGQFDLVWSME 234 (380)
Q Consensus 223 ~~~~fD~V~~~~ 234 (380)
++++.|+.+-+.
T Consensus 78 ~~Gkld~L~NNA 89 (289)
T KOG1209|consen 78 PDGKLDLLYNNA 89 (289)
T ss_pred CCCceEEEEcCC
Confidence 678888877543
No 417
>PRK07454 short chain dehydrogenase; Provisional
Probab=78.61 E-value=16 Score=32.19 Aligned_cols=75 Identities=16% Similarity=0.032 Sum_probs=50.7
Q ss_pred CCEEEEECCCcChHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-----CC-----CC
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-----FP-----DG 225 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~---~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~~-----~~ 225 (380)
..++|=.| |+|.++..+++.+ |.+|++++.++...+...+.....+ .++.++.+|+.+.. +. -+
T Consensus 6 ~k~vlItG-~sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 82 (241)
T PRK07454 6 MPRALITG-ASSGIGKATALAFAKAGWDLALVARSQDALEALAAELRSTG--VKAAAYSIDLSNPEAIAPGIAELLEQFG 82 (241)
T ss_pred CCEEEEeC-CCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhCC--CcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 55677777 4677777766655 7899999999876655554444322 46888999987742 11 14
Q ss_pred CccEEEecccc
Q 016921 226 QFDLVWSMESG 236 (380)
Q Consensus 226 ~fD~V~~~~~l 236 (380)
+.|.|+.....
T Consensus 83 ~id~lv~~ag~ 93 (241)
T PRK07454 83 CPDVLINNAGM 93 (241)
T ss_pred CCCEEEECCCc
Confidence 58998876554
No 418
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=78.40 E-value=3.6 Score=38.39 Aligned_cols=65 Identities=23% Similarity=0.249 Sum_probs=49.1
Q ss_pred EEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC---CCCCCccEEEecc
Q 016921 161 NVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP---FPDGQFDLVWSME 234 (380)
Q Consensus 161 ~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~---~~~~~fD~V~~~~ 234 (380)
+++|+=||.|.+..-+.+.....+.++|+++...+.-+.+.. ....+|+.++. ++. .+|+++...
T Consensus 2 ~~~dlFsG~Gg~~~g~~~ag~~~~~a~e~~~~a~~~y~~N~~--------~~~~~Di~~~~~~~l~~-~~D~l~ggp 69 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQAGFEVVWAVEIDPDACETYKANFP--------EVICGDITEIDPSDLPK-DVDLLIGGP 69 (335)
T ss_dssp EEEEET-TTTHHHHHHHHTTEEEEEEEESSHHHHHHHHHHHT--------EEEESHGGGCHHHHHHH-T-SEEEEE-
T ss_pred cEEEEccCccHHHHHHHhcCcEEEEEeecCHHHHHhhhhccc--------ccccccccccccccccc-cceEEEecc
Confidence 699999999999999887632468899999998888877662 77888988874 443 599988643
No 419
>PRK06182 short chain dehydrogenase; Validated
Probab=78.29 E-value=28 Score=31.44 Aligned_cols=71 Identities=14% Similarity=0.134 Sum_probs=46.6
Q ss_pred CCEEEEECCCcChHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-----C-----CCC
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-----F-----PDG 225 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~---~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~-----~~~ 225 (380)
+.+||=.|+ +|..+..+++.+ |.+|++++.+++.++... . .++.++.+|+.+.. + ..+
T Consensus 3 ~k~vlItGa-sggiG~~la~~l~~~G~~V~~~~r~~~~l~~~~----~----~~~~~~~~Dv~~~~~~~~~~~~~~~~~~ 73 (273)
T PRK06182 3 KKVALVTGA-SSGIGKATARRLAAQGYTVYGAARRVDKMEDLA----S----LGVHPLSLDVTDEASIKAAVDTIIAEEG 73 (273)
T ss_pred CCEEEEECC-CChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH----h----CCCeEEEeeCCCHHHHHHHHHHHHHhcC
Confidence 457887774 556677776655 789999998876554321 1 24778888887642 1 124
Q ss_pred CccEEEeccccCC
Q 016921 226 QFDLVWSMESGEH 238 (380)
Q Consensus 226 ~fD~V~~~~~l~~ 238 (380)
.+|+++.+.....
T Consensus 74 ~id~li~~ag~~~ 86 (273)
T PRK06182 74 RIDVLVNNAGYGS 86 (273)
T ss_pred CCCEEEECCCcCC
Confidence 6899998765543
No 420
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=78.01 E-value=5.7 Score=37.93 Aligned_cols=93 Identities=16% Similarity=0.214 Sum_probs=59.3
Q ss_pred CCCEEEEECCC-cChHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC-----CCCCCCccEE
Q 016921 158 RPKNVVDVGCG-IGGSSRYLAKKFGA-KCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ-----PFPDGQFDLV 230 (380)
Q Consensus 158 ~~~~vLDiGcG-tG~~~~~l~~~~~~-~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-----~~~~~~fD~V 230 (380)
++.+||=.|+| .|..+..+++..|. .++++|.++...+.+++ .+. ..++..+-.++ ......+|+|
T Consensus 186 ~g~~vlI~g~g~vG~~~~~la~~~G~~~v~~~~~~~~k~~~~~~----~g~---~~~i~~~~~~~~~~v~~~~~~~~d~v 258 (365)
T cd08278 186 PGSSIAVFGAGAVGLAAVMAAKIAGCTTIIAVDIVDSRLELAKE----LGA---THVINPKEEDLVAAIREITGGGVDYA 258 (365)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH----cCC---cEEecCCCcCHHHHHHHHhCCCCcEE
Confidence 47888888876 36677778887777 69999999887776654 221 11221111111 0113468988
Q ss_pred EeccccCCCCCHHHHHHHHHHhcCCCcEEEEEe
Q 016921 231 WSMESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 231 ~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~ 263 (380)
+-... . ...+..+.+.|+++|.++...
T Consensus 259 ld~~g-----~-~~~~~~~~~~l~~~G~~v~~g 285 (365)
T cd08278 259 LDTTG-----V-PAVIEQAVDALAPRGTLALVG 285 (365)
T ss_pred EECCC-----C-cHHHHHHHHHhccCCEEEEeC
Confidence 75321 1 246788999999999988754
No 421
>PRK08267 short chain dehydrogenase; Provisional
Probab=77.59 E-value=21 Score=31.93 Aligned_cols=72 Identities=15% Similarity=0.174 Sum_probs=47.2
Q ss_pred EEEEECCCcChHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-----CC------CCC
Q 016921 161 NVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-----FP------DGQ 226 (380)
Q Consensus 161 ~vLDiGcGtG~~~~~l~~~~---~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~~------~~~ 226 (380)
++|=.|++ |.++..+++.+ |.+|+.++.++..++....... ..++.++.+|+.+.. +. .++
T Consensus 3 ~vlItGas-g~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~----~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~~ 77 (260)
T PRK08267 3 SIFITGAA-SGIGRATALLFAAEGWRVGAYDINEAGLAALAAELG----AGNAWTGALDVTDRAAWDAALADFAAATGGR 77 (260)
T ss_pred EEEEeCCC-chHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhc----CCceEEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence 46767754 55565555544 8899999998876665544332 146889999987742 00 357
Q ss_pred ccEEEeccccC
Q 016921 227 FDLVWSMESGE 237 (380)
Q Consensus 227 fD~V~~~~~l~ 237 (380)
+|.|+.+....
T Consensus 78 id~vi~~ag~~ 88 (260)
T PRK08267 78 LDVLFNNAGIL 88 (260)
T ss_pred CCEEEECCCCC
Confidence 89988766543
No 422
>cd08274 MDR9 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=77.19 E-value=33 Score=32.11 Aligned_cols=91 Identities=21% Similarity=0.307 Sum_probs=56.3
Q ss_pred CCCEEEEECC--CcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCC---C-CCCCCCccEEE
Q 016921 158 RPKNVVDVGC--GIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ---Q-PFPDGQFDLVW 231 (380)
Q Consensus 158 ~~~~vLDiGc--GtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~---~-~~~~~~fD~V~ 231 (380)
++.+||=+|+ +.|..+..+++..++++++++.+. ..+.++ +.|. . .+...+-.. . ......+|+|+
T Consensus 177 ~g~~vlI~g~~g~ig~~~~~~a~~~g~~vi~~~~~~-~~~~~~----~~g~--~-~~~~~~~~~~~~~~~~~~~~~d~vi 248 (350)
T cd08274 177 AGETVLVTGASGGVGSALVQLAKRRGAIVIAVAGAA-KEEAVR----ALGA--D-TVILRDAPLLADAKALGGEPVDVVA 248 (350)
T ss_pred CCCEEEEEcCCcHHHHHHHHHHHhcCCEEEEEeCch-hhHHHH----hcCC--e-EEEeCCCccHHHHHhhCCCCCcEEE
Confidence 4889998887 367777778887789999988654 444443 2332 1 112111000 0 01235689887
Q ss_pred eccccCCCCCHHHHHHHHHHhcCCCcEEEEEe
Q 016921 232 SMESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 232 ~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~ 263 (380)
.... ...+..+.+.|+++|.++...
T Consensus 249 ~~~g-------~~~~~~~~~~l~~~G~~v~~g 273 (350)
T cd08274 249 DVVG-------GPLFPDLLRLLRPGGRYVTAG 273 (350)
T ss_pred ecCC-------HHHHHHHHHHhccCCEEEEec
Confidence 5322 236788899999999988654
No 423
>PRK09072 short chain dehydrogenase; Provisional
Probab=77.17 E-value=31 Score=30.90 Aligned_cols=76 Identities=18% Similarity=0.253 Sum_probs=49.4
Q ss_pred CCEEEEECCCcChHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-----C----CCCC
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-----F----PDGQ 226 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~---~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~----~~~~ 226 (380)
+.+||=.|++ |.++..+++.+ |.+|++++.++..++...... . .+.++.++..|+.+.. + ..+.
T Consensus 5 ~~~vlItG~s-~~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~-~--~~~~~~~~~~D~~d~~~~~~~~~~~~~~~~ 80 (263)
T PRK09072 5 DKRVLLTGAS-GGIGQALAEALAAAGARLLLVGRNAEKLEALAARL-P--YPGRHRWVVADLTSEAGREAVLARAREMGG 80 (263)
T ss_pred CCEEEEECCC-chHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH-h--cCCceEEEEccCCCHHHHHHHHHHHHhcCC
Confidence 5677777755 45555555443 889999999987766555444 1 2357888999987642 0 0246
Q ss_pred ccEEEeccccCC
Q 016921 227 FDLVWSMESGEH 238 (380)
Q Consensus 227 fD~V~~~~~l~~ 238 (380)
.|.|+......+
T Consensus 81 id~lv~~ag~~~ 92 (263)
T PRK09072 81 INVLINNAGVNH 92 (263)
T ss_pred CCEEEECCCCCC
Confidence 899887765533
No 424
>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional
Probab=77.10 E-value=38 Score=30.57 Aligned_cols=75 Identities=15% Similarity=-0.027 Sum_probs=45.0
Q ss_pred CCEEEEECCCc-ChHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC----------CCC
Q 016921 159 PKNVVDVGCGI-GGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP----------FPD 224 (380)
Q Consensus 159 ~~~vLDiGcGt-G~~~~~l~~~~---~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~----------~~~ 224 (380)
+.++|=.|++. +..+..+++.+ |++|+.++.+....+.+++..... +.+.++.+|+.+.. -.-
T Consensus 6 ~k~~lITGas~~~GIG~aia~~la~~G~~vil~~r~~~~~~~~~~~~~~~---~~~~~~~~Dl~~~~~v~~~~~~~~~~~ 82 (262)
T PRK07984 6 GKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDKLKGRVEEFAAQL---GSDIVLPCDVAEDASIDAMFAELGKVW 82 (262)
T ss_pred CCEEEEeCCCCCccHHHHHHHHHHHCCCEEEEEecchhHHHHHHHHHhcc---CCceEeecCCCCHHHHHHHHHHHHhhc
Confidence 67888888875 35555555544 789988887643223333322221 24567788887631 012
Q ss_pred CCccEEEecccc
Q 016921 225 GQFDLVWSMESG 236 (380)
Q Consensus 225 ~~fD~V~~~~~l 236 (380)
+.+|+++.+..+
T Consensus 83 g~iD~linnAg~ 94 (262)
T PRK07984 83 PKFDGFVHSIGF 94 (262)
T ss_pred CCCCEEEECCcc
Confidence 568998877654
No 425
>PF14740 DUF4471: Domain of unknown function (DUF4471)
Probab=76.79 E-value=5.1 Score=36.90 Aligned_cols=67 Identities=19% Similarity=0.271 Sum_probs=41.8
Q ss_pred CCCccEEEeccccCCCCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHHHHH
Q 016921 224 DGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYV 303 (380)
Q Consensus 224 ~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (380)
.+.||+|+......|+-.+. +.++++|+|.|++-..-. . -.+.. +.... -.+.+.
T Consensus 220 ~~~Fd~ifvs~s~vh~L~p~-----l~~~~a~~A~LvvEtaKf--m----vdLrK---Eq~~~-----------F~~kv~ 274 (289)
T PF14740_consen 220 QNFFDLIFVSCSMVHFLKPE-----LFQALAPDAVLVVETAKF--M----VDLRK---EQLQE-----------FVKKVK 274 (289)
T ss_pred cCCCCEEEEhhhhHhhcchH-----HHHHhCCCCEEEEEcchh--h----eeCCH---HHHHH-----------HHHHHH
Confidence 46799999877665553333 778899999988854200 0 00111 11111 146788
Q ss_pred HHHHhCCCcEEE
Q 016921 304 KLLQSLSLEDIK 315 (380)
Q Consensus 304 ~ll~~aGf~~v~ 315 (380)
++++++||+.+.
T Consensus 275 eLA~~aG~~p~~ 286 (289)
T PF14740_consen 275 ELAKAAGFKPVT 286 (289)
T ss_pred HHHHHCCCcccc
Confidence 999999998653
No 426
>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like. This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (
Probab=76.55 E-value=17 Score=34.12 Aligned_cols=96 Identities=22% Similarity=0.214 Sum_probs=57.0
Q ss_pred CCCEEEEECCC-cChHHHHHHHHcC-CEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCC-C--CCCCCCccEEEe
Q 016921 158 RPKNVVDVGCG-IGGSSRYLAKKFG-AKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ-Q--PFPDGQFDLVWS 232 (380)
Q Consensus 158 ~~~~vLDiGcG-tG~~~~~l~~~~~-~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~--~~~~~~fD~V~~ 232 (380)
++.+||=.|+| .|..+..+++..| .++++++.++.....+++ .|...-+.....+... + ..+...+|+|+-
T Consensus 166 ~g~~vlI~g~g~~g~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~----~g~~~~v~~~~~~~~~~i~~~~~~~~~d~vld 241 (345)
T cd08286 166 PGDTVAIVGAGPVGLAALLTAQLYSPSKIIMVDLDDNRLEVAKK----LGATHTVNSAKGDAIEQVLELTDGRGVDVVIE 241 (345)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH----hCCCceeccccccHHHHHHHHhCCCCCCEEEE
Confidence 47777777765 4555666777667 789999998877666553 2321111111111100 0 012346898874
Q ss_pred ccccCCCCCHHHHHHHHHHhcCCCcEEEEEe
Q 016921 233 MESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 233 ~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~ 263 (380)
.. .. ...+..+.+.|+++|.++...
T Consensus 242 ~~-----g~-~~~~~~~~~~l~~~g~~v~~g 266 (345)
T cd08286 242 AV-----GI-PATFELCQELVAPGGHIANVG 266 (345)
T ss_pred CC-----CC-HHHHHHHHHhccCCcEEEEec
Confidence 32 22 235788889999999988754
No 427
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=76.53 E-value=11 Score=35.33 Aligned_cols=97 Identities=19% Similarity=0.216 Sum_probs=58.0
Q ss_pred CCEEEEECCCc--ChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHH-------cCCC-----CCeEEEEcCCCCCCCCC
Q 016921 159 PKNVVDVGCGI--GGSSRYLAKKFGAKCQGITLSPVQAQRANALAAA-------RGLA-----DKVSFQVGDALQQPFPD 224 (380)
Q Consensus 159 ~~~vLDiGcGt--G~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~-------~~~~-----~~v~~~~~d~~~~~~~~ 224 (380)
-.+|-=||+|+ ..++..++.. |.+|+..|++++.++.+++.+.. .++. .++.+.. ++.+ .-
T Consensus 7 i~~VaVIGaG~MG~giA~~~a~a-G~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~-~l~~---av 81 (321)
T PRK07066 7 IKTFAAIGSGVIGSGWVARALAH-GLDVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFVA-TIEA---CV 81 (321)
T ss_pred CCEEEEECcCHHHHHHHHHHHhC-CCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceecC-CHHH---Hh
Confidence 35788899984 3455555554 99999999999988776654421 2211 1222211 1111 01
Q ss_pred CCccEEEeccccCCCCCHHHHHHHHHHhcCCCcEEEE
Q 016921 225 GQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIII 261 (380)
Q Consensus 225 ~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~ 261 (380)
...|+|+-. +.+.+.-+..+++++.+.++|+..|.-
T Consensus 82 ~~aDlViEa-vpE~l~vK~~lf~~l~~~~~~~aIlaS 117 (321)
T PRK07066 82 ADADFIQES-APEREALKLELHERISRAAKPDAIIAS 117 (321)
T ss_pred cCCCEEEEC-CcCCHHHHHHHHHHHHHhCCCCeEEEE
Confidence 345766542 344444457889999999999874443
No 428
>cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi
Probab=76.42 E-value=24 Score=33.93 Aligned_cols=96 Identities=20% Similarity=0.150 Sum_probs=58.1
Q ss_pred CCCEEEEECCC-cChHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEc---CC----CCCCCCCCCcc
Q 016921 158 RPKNVVDVGCG-IGGSSRYLAKKFGA-KCQGITLSPVQAQRANALAAARGLADKVSFQVG---DA----LQQPFPDGQFD 228 (380)
Q Consensus 158 ~~~~vLDiGcG-tG~~~~~l~~~~~~-~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~---d~----~~~~~~~~~fD 228 (380)
++.+||=.|+| .|..+..+++..|. .|++++.++...+.+++ .|...-+..... +. ..+ .+...+|
T Consensus 203 ~g~~VlV~g~g~vG~~ai~lA~~~G~~~vi~~~~~~~~~~~~~~----~g~~~~v~~~~~~~~~~~~~v~~~-~~g~gvD 277 (384)
T cd08265 203 PGAYVVVYGAGPIGLAAIALAKAAGASKVIAFEISEERRNLAKE----MGADYVFNPTKMRDCLSGEKVMEV-TKGWGAD 277 (384)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH----cCCCEEEcccccccccHHHHHHHh-cCCCCCC
Confidence 47888877876 35556667776677 79999998876555543 333110111100 10 011 1235689
Q ss_pred EEEeccccCCCCCHHHHHHHHHHhcCCCcEEEEEe
Q 016921 229 LVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 229 ~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~ 263 (380)
+|+... ......+..+.+.|+++|+++...
T Consensus 278 vvld~~-----g~~~~~~~~~~~~l~~~G~~v~~g 307 (384)
T cd08265 278 IQVEAA-----GAPPATIPQMEKSIAINGKIVYIG 307 (384)
T ss_pred EEEECC-----CCcHHHHHHHHHHHHcCCEEEEEC
Confidence 887542 233456788899999999998764
No 429
>PRK07985 oxidoreductase; Provisional
Probab=76.27 E-value=30 Score=31.83 Aligned_cols=102 Identities=18% Similarity=0.174 Sum_probs=59.5
Q ss_pred CCEEEEECCCcChHHHHHHHHc---CCEEEEEeCCH--HHHHHHHHHHHHcCCCCCeEEEEcCCCCCC----------CC
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSP--VQAQRANALAAARGLADKVSFQVGDALQQP----------FP 223 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~---~~~v~giD~s~--~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~----------~~ 223 (380)
+.++|-.|+ +|.++..+++.+ |++|+.++.+. ...+...+.....+ .++.++.+|+.+.. -.
T Consensus 49 ~k~vlITGa-s~gIG~aia~~L~~~G~~Vi~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~ 125 (294)
T PRK07985 49 DRKALVTGG-DSGIGRAAAIAYAREGADVAISYLPVEEEDAQDVKKIIEECG--RKAVLLPGDLSDEKFARSLVHEAHKA 125 (294)
T ss_pred CCEEEEECC-CCcHHHHHHHHHHHCCCEEEEecCCcchhhHHHHHHHHHHcC--CeEEEEEccCCCHHHHHHHHHHHHHH
Confidence 578888885 455555555554 78888877542 33333433333333 45778888987631 01
Q ss_pred CCCccEEEeccccCC----CC-----CH-----------HHHHHHHHHhcCCCcEEEEEe
Q 016921 224 DGQFDLVWSMESGEH----MP-----DK-----------SKFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 224 ~~~fD~V~~~~~l~~----~~-----~~-----------~~~l~~~~r~LkpgG~l~~~~ 263 (380)
-+..|.++.+..... +. ++ -.+++.+.+.++.+|.+++..
T Consensus 126 ~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~iv~iS 185 (294)
T PRK07985 126 LGGLDIMALVAGKQVAIPDIADLTSEQFQKTFAINVFALFWLTQEAIPLLPKGASIITTS 185 (294)
T ss_pred hCCCCEEEECCCCCcCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhhcCCEEEEEC
Confidence 246798887654321 11 11 135556667777788877654
No 430
>TIGR00692 tdh L-threonine 3-dehydrogenase. E. coli His-90 modulates substrate specificity and is believed part of the active site.
Probab=76.27 E-value=42 Score=31.40 Aligned_cols=93 Identities=18% Similarity=0.132 Sum_probs=57.0
Q ss_pred CCCEEEEECCC-cChHHHHHHHHcCCE-EEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC------CCCCCCccE
Q 016921 158 RPKNVVDVGCG-IGGSSRYLAKKFGAK-CQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ------PFPDGQFDL 229 (380)
Q Consensus 158 ~~~~vLDiGcG-tG~~~~~l~~~~~~~-v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~------~~~~~~fD~ 229 (380)
++.+||-.|+| .|..+..+++..|.+ |++++.++...+.+++ .+. -.++...-.++ ....+.+|+
T Consensus 161 ~g~~vlI~~~g~vg~~a~~la~~~G~~~v~~~~~~~~~~~~~~~----~g~---~~~v~~~~~~~~~~l~~~~~~~~~d~ 233 (340)
T TIGR00692 161 SGKSVLVTGAGPIGLMAIAVAKASGAYPVIVSDPNEYRLELAKK----MGA---TYVVNPFKEDVVKEVADLTDGEGVDV 233 (340)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHH----hCC---cEEEcccccCHHHHHHHhcCCCCCCE
Confidence 47777777765 466667777777876 8888888766665543 232 11111111110 112356898
Q ss_pred EEeccccCCCCCHHHHHHHHHHhcCCCcEEEEEe
Q 016921 230 VWSMESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 230 V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~ 263 (380)
|+-... ....+.++.+.|+++|.++...
T Consensus 234 vld~~g------~~~~~~~~~~~l~~~g~~v~~g 261 (340)
T TIGR00692 234 FLEMSG------APKALEQGLQAVTPGGRVSLLG 261 (340)
T ss_pred EEECCC------CHHHHHHHHHhhcCCCEEEEEc
Confidence 876421 1356788999999999987764
No 431
>PLN02989 cinnamyl-alcohol dehydrogenase family protein
Probab=76.09 E-value=11 Score=35.16 Aligned_cols=77 Identities=18% Similarity=0.235 Sum_probs=47.2
Q ss_pred CCEEEEECCCcChHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCC-C--CCCccEEEe
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPF-P--DGQFDLVWS 232 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~---~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~-~--~~~fD~V~~ 232 (380)
+.+||=.| |+|..+..+++++ |.+|++++.++.............+...++.++.+|+.+... . -..+|.|+.
T Consensus 5 ~k~vlVtG-~~G~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vih 83 (325)
T PLN02989 5 GKVVCVTG-ASGYIASWIVKLLLFRGYTINATVRDPKDRKKTDHLLALDGAKERLKLFKADLLDEGSFELAIDGCETVFH 83 (325)
T ss_pred CCEEEEEC-CchHHHHHHHHHHHHCCCEEEEEEcCCcchhhHHHHHhccCCCCceEEEeCCCCCchHHHHHHcCCCEEEE
Confidence 67888887 6777777777765 778888766654433322222212223468899999887531 0 124788876
Q ss_pred cccc
Q 016921 233 MESG 236 (380)
Q Consensus 233 ~~~l 236 (380)
....
T Consensus 84 ~A~~ 87 (325)
T PLN02989 84 TASP 87 (325)
T ss_pred eCCC
Confidence 6543
No 432
>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=75.86 E-value=35 Score=31.21 Aligned_cols=90 Identities=23% Similarity=0.286 Sum_probs=59.8
Q ss_pred CCCEEEEECC--CcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC-----CCCCCCccEE
Q 016921 158 RPKNVVDVGC--GIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ-----PFPDGQFDLV 230 (380)
Q Consensus 158 ~~~~vLDiGc--GtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-----~~~~~~fD~V 230 (380)
++.+||=.|+ +.|..+..+++..|.+|++++.+++..+.+++ .|. . .+.. +-.++ .. .+.+|+|
T Consensus 142 ~g~~vlV~ga~g~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~~----~g~-~--~~~~-~~~~~~~~i~~~-~~~~d~v 212 (320)
T cd08243 142 PGDTLLIRGGTSSVGLAALKLAKALGATVTATTRSPERAALLKE----LGA-D--EVVI-DDGAIAEQLRAA-PGGFDKV 212 (320)
T ss_pred CCCEEEEEcCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHh----cCC-c--EEEe-cCccHHHHHHHh-CCCceEE
Confidence 3788888885 47778888888879999999999877666533 232 1 1111 11111 12 3568988
Q ss_pred EeccccCCCCCHHHHHHHHHHhcCCCcEEEEEe
Q 016921 231 WSMESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 231 ~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~ 263 (380)
+.... ...+.++.+.|+++|+++...
T Consensus 213 l~~~~-------~~~~~~~~~~l~~~g~~v~~g 238 (320)
T cd08243 213 LELVG-------TATLKDSLRHLRPGGIVCMTG 238 (320)
T ss_pred EECCC-------hHHHHHHHHHhccCCEEEEEc
Confidence 75321 246788899999999987764
No 433
>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase. Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me
Probab=75.83 E-value=9.1 Score=36.42 Aligned_cols=93 Identities=17% Similarity=0.185 Sum_probs=59.1
Q ss_pred CCCEEEEECCC-cChHHHHHHHHcCCE-EEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC------CCCCCCccE
Q 016921 158 RPKNVVDVGCG-IGGSSRYLAKKFGAK-CQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ------PFPDGQFDL 229 (380)
Q Consensus 158 ~~~~vLDiGcG-tG~~~~~l~~~~~~~-v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~------~~~~~~fD~ 229 (380)
++.+||-.|+| .|..+..+++..|.. |++++.++...+.+++ .|. ..++..+-... ..+...+|+
T Consensus 182 ~g~~vLI~g~g~vG~a~i~lak~~G~~~Vi~~~~~~~~~~~~~~----~g~---~~vv~~~~~~~~~~l~~~~~~~~vd~ 254 (363)
T cd08279 182 PGDTVAVIGCGGVGLNAIQGARIAGASRIIAVDPVPEKLELARR----FGA---THTVNASEDDAVEAVRDLTDGRGADY 254 (363)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHH----hCC---eEEeCCCCccHHHHHHHHcCCCCCCE
Confidence 47888888875 466777778777875 9999998887766542 232 11221111111 012456898
Q ss_pred EEeccccCCCCCHHHHHHHHHHhcCCCcEEEEEe
Q 016921 230 VWSMESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 230 V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~ 263 (380)
|+.... . ...+..+.+.|+++|+++...
T Consensus 255 vld~~~-----~-~~~~~~~~~~l~~~G~~v~~g 282 (363)
T cd08279 255 AFEAVG-----R-AATIRQALAMTRKGGTAVVVG 282 (363)
T ss_pred EEEcCC-----C-hHHHHHHHHHhhcCCeEEEEe
Confidence 874321 1 356788999999999988764
No 434
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=75.39 E-value=20 Score=31.95 Aligned_cols=75 Identities=17% Similarity=0.158 Sum_probs=50.5
Q ss_pred CCEEEEECCCcChHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-----C-----CCC
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-----F-----PDG 225 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~---~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~-----~~~ 225 (380)
+.+||=.|+ +|.++..+++.+ |.+|+.++.+++.++...+.++..+ .++.++.+|+.+.. + .-+
T Consensus 11 ~k~ilItGa-s~~IG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 87 (256)
T PRK06124 11 GQVALVTGS-ARGLGFEIARALAGAGAHVLVNGRNAATLEAAVAALRAAG--GAAEALAFDIADEEAVAAAFARIDAEHG 87 (256)
T ss_pred CCEEEEECC-CchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHhcC--CceEEEEccCCCHHHHHHHHHHHHHhcC
Confidence 678887775 555666665554 8899999999877666555554433 46888899987631 0 124
Q ss_pred CccEEEecccc
Q 016921 226 QFDLVWSMESG 236 (380)
Q Consensus 226 ~fD~V~~~~~l 236 (380)
++|.|+.....
T Consensus 88 ~id~vi~~ag~ 98 (256)
T PRK06124 88 RLDILVNNVGA 98 (256)
T ss_pred CCCEEEECCCC
Confidence 67888876544
No 435
>PRK06914 short chain dehydrogenase; Provisional
Probab=75.30 E-value=19 Score=32.55 Aligned_cols=77 Identities=17% Similarity=0.143 Sum_probs=49.3
Q ss_pred CCEEEEECCCcChHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-C--------CCCC
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-F--------PDGQ 226 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~---~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-~--------~~~~ 226 (380)
+.++|=.|+ +|.++..+++.+ |.+|++++-++...+...+.....+...++.++.+|+.+.. . .-+.
T Consensus 3 ~k~~lItGa-sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~~ 81 (280)
T PRK06914 3 KKIAIVTGA-SSGFGLLTTLELAKKGYLVIATMRNPEKQENLLSQATQLNLQQNIKVQQLDVTDQNSIHNFQLVLKEIGR 81 (280)
T ss_pred CCEEEEECC-CchHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcCCCCceeEEecCCCCHHHHHHHHHHHHhcCC
Confidence 456777774 445555555544 88999999888766655554444343457889999987742 0 0145
Q ss_pred ccEEEecccc
Q 016921 227 FDLVWSMESG 236 (380)
Q Consensus 227 fD~V~~~~~l 236 (380)
.|.|+.....
T Consensus 82 id~vv~~ag~ 91 (280)
T PRK06914 82 IDLLVNNAGY 91 (280)
T ss_pred eeEEEECCcc
Confidence 7888776543
No 436
>cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin
Probab=75.27 E-value=31 Score=32.05 Aligned_cols=92 Identities=11% Similarity=0.046 Sum_probs=55.0
Q ss_pred CCEEEEE--CCC-cChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC-----C-CCCCCccE
Q 016921 159 PKNVVDV--GCG-IGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ-----P-FPDGQFDL 229 (380)
Q Consensus 159 ~~~vLDi--GcG-tG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-----~-~~~~~fD~ 229 (380)
+.++|=+ |+| .|..+..+++..|+++++++.++...+.+++ .|. -.++..+-.++ . .+...+|+
T Consensus 143 ~~~vlv~~~g~g~vG~~a~q~a~~~G~~vi~~~~~~~~~~~~~~----~g~---~~~i~~~~~~~~~~v~~~~~~~~~d~ 215 (324)
T cd08291 143 GAKAVVHTAAASALGRMLVRLCKADGIKVINIVRRKEQVDLLKK----IGA---EYVLNSSDPDFLEDLKELIAKLNATI 215 (324)
T ss_pred CCcEEEEccCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH----cCC---cEEEECCCccHHHHHHHHhCCCCCcE
Confidence 3344443 443 5777777888778999999999987777754 232 12222211111 0 12346898
Q ss_pred EEeccccCCCCCHHHHHHHHHHhcCCCcEEEEEec
Q 016921 230 VWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (380)
Q Consensus 230 V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~~ 264 (380)
|+-... . .......+.|++||++++...
T Consensus 216 vid~~g-----~--~~~~~~~~~l~~~G~~v~~g~ 243 (324)
T cd08291 216 FFDAVG-----G--GLTGQILLAMPYGSTLYVYGY 243 (324)
T ss_pred EEECCC-----c--HHHHHHHHhhCCCCEEEEEEe
Confidence 874322 1 234566888999999888653
No 437
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=75.27 E-value=19 Score=32.11 Aligned_cols=75 Identities=19% Similarity=0.204 Sum_probs=52.6
Q ss_pred CCEEEEECCCcChHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-C---------CCC
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-F---------PDG 225 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~---~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-~---------~~~ 225 (380)
+.+||=.| |+|.++..+++.+ |.+|+.++.+...++...+.+...+ .++.++.+|+.+.. + ..+
T Consensus 12 ~k~ilItG-a~g~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~--~~~~~~~~Dl~d~~~i~~~~~~~~~~~~ 88 (259)
T PRK08213 12 GKTALVTG-GSRGLGLQIAEALGEAGARVVLSARKAEELEEAAAHLEALG--IDALWIAADVADEADIERLAEETLERFG 88 (259)
T ss_pred CCEEEEEC-CCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcC--CeEEEEEccCCCHHHHHHHHHHHHHHhC
Confidence 67788888 5677777777665 7899999999887776665554433 46788999988742 1 014
Q ss_pred CccEEEecccc
Q 016921 226 QFDLVWSMESG 236 (380)
Q Consensus 226 ~fD~V~~~~~l 236 (380)
.+|.|+.....
T Consensus 89 ~id~vi~~ag~ 99 (259)
T PRK08213 89 HVDILVNNAGA 99 (259)
T ss_pred CCCEEEECCCC
Confidence 68998876544
No 438
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=74.72 E-value=19 Score=32.02 Aligned_cols=76 Identities=16% Similarity=0.120 Sum_probs=52.2
Q ss_pred CCEEEEECCCcChHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-----C-----CCC
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-----F-----PDG 225 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~---~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~-----~~~ 225 (380)
+.+||=.| |+|.++..+++++ |.+|++++.++..++...+.+...+ .++.++..|+.+.. + .-+
T Consensus 10 ~k~vlItG-a~g~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 86 (255)
T PRK07523 10 GRRALVTG-SSQGIGYALAEGLAQAGAEVILNGRDPAKLAAAAESLKGQG--LSAHALAFDVTDHDAVRAAIDAFEAEIG 86 (255)
T ss_pred CCEEEEEC-CcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcC--ceEEEEEccCCCHHHHHHHHHHHHHhcC
Confidence 67888777 5677777776655 7899999999887766655554433 35788888987631 1 124
Q ss_pred CccEEEeccccC
Q 016921 226 QFDLVWSMESGE 237 (380)
Q Consensus 226 ~fD~V~~~~~l~ 237 (380)
..|.|+......
T Consensus 87 ~~d~li~~ag~~ 98 (255)
T PRK07523 87 PIDILVNNAGMQ 98 (255)
T ss_pred CCCEEEECCCCC
Confidence 689888766543
No 439
>PRK05855 short chain dehydrogenase; Validated
Probab=74.62 E-value=1e+02 Score=31.15 Aligned_cols=77 Identities=25% Similarity=0.173 Sum_probs=52.9
Q ss_pred CCEEEEECCCcChHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-----C-----CCC
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-----F-----PDG 225 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~---~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~-----~~~ 225 (380)
+.++|=+|+ +|.++..+++++ |.+|+.++.+...++...+.+...+ .++.++.+|+.+.. + ..+
T Consensus 315 ~~~~lv~G~-s~giG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~~~~~~~~~~~~~g 391 (582)
T PRK05855 315 GKLVVVTGA-GSGIGRETALAFAREGAEVVASDIDEAAAERTAELIRAAG--AVAHAYRVDVSDADAMEAFAEWVRAEHG 391 (582)
T ss_pred CCEEEEECC-cCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CeEEEEEcCCCCHHHHHHHHHHHHHhcC
Confidence 467776664 666676666655 7899999999877766655554444 36888999988742 0 124
Q ss_pred CccEEEeccccCC
Q 016921 226 QFDLVWSMESGEH 238 (380)
Q Consensus 226 ~fD~V~~~~~l~~ 238 (380)
.+|+++.+..+.+
T Consensus 392 ~id~lv~~Ag~~~ 404 (582)
T PRK05855 392 VPDIVVNNAGIGM 404 (582)
T ss_pred CCcEEEECCccCC
Confidence 6899988766543
No 440
>PRK08415 enoyl-(acyl carrier protein) reductase; Provisional
Probab=74.62 E-value=52 Score=29.91 Aligned_cols=102 Identities=16% Similarity=0.136 Sum_probs=60.6
Q ss_pred CCEEEEECCCc-ChHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC----------CCC
Q 016921 159 PKNVVDVGCGI-GGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP----------FPD 224 (380)
Q Consensus 159 ~~~vLDiGcGt-G~~~~~l~~~~---~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~----------~~~ 224 (380)
+..+|=.|++. +.++..+++.+ |++|+.++.+....+..++...+.+ .. .++..|+.+.. -..
T Consensus 5 ~k~~lItGas~~~GIG~aiA~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~--~~-~~~~~Dv~d~~~v~~~~~~i~~~~ 81 (274)
T PRK08415 5 GKKGLIVGVANNKSIAYGIAKACFEQGAELAFTYLNEALKKRVEPIAQELG--SD-YVYELDVSKPEHFKSLAESLKKDL 81 (274)
T ss_pred CcEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEecCHHHHHHHHHHHHhcC--Cc-eEEEecCCCHHHHHHHHHHHHHHc
Confidence 67888888762 45666666554 8899999888543333333333322 23 56778887742 012
Q ss_pred CCccEEEeccccCC-------CCC--H---H-----------HHHHHHHHhcCCCcEEEEEe
Q 016921 225 GQFDLVWSMESGEH-------MPD--K---S-----------KFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 225 ~~fD~V~~~~~l~~-------~~~--~---~-----------~~l~~~~r~LkpgG~l~~~~ 263 (380)
+.+|+++.+..+.. +.+ . . .+.+.+...++.+|.++...
T Consensus 82 g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~p~m~~~g~Iv~is 143 (274)
T PRK08415 82 GKIDFIVHSVAFAPKEALEGSFLETSKEAFNIAMEISVYSLIELTRALLPLLNDGASVLTLS 143 (274)
T ss_pred CCCCEEEECCccCcccccccccccCCHHHHHHHhhhhhHHHHHHHHHHHHHhccCCcEEEEe
Confidence 67899887765421 111 1 1 24566777777788876654
No 441
>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu
Probab=74.18 E-value=34 Score=32.54 Aligned_cols=93 Identities=19% Similarity=0.201 Sum_probs=57.9
Q ss_pred CCCEEEEECCC-cChHHHHHHHHcCCE-EEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC------CCCCCCccE
Q 016921 158 RPKNVVDVGCG-IGGSSRYLAKKFGAK-CQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ------PFPDGQFDL 229 (380)
Q Consensus 158 ~~~~vLDiGcG-tG~~~~~l~~~~~~~-v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~------~~~~~~fD~ 229 (380)
++.+||=.|+| .|..+..+++..|.. +++++.++...+.+++ .+. ..++..+-... ...+..+|+
T Consensus 187 ~g~~VlI~g~g~vG~~~~~lak~~G~~~vi~~~~s~~~~~~~~~----~g~---~~v~~~~~~~~~~~l~~~~~~~~~d~ 259 (367)
T cd08263 187 PGETVAVIGVGGVGSSAIQLAKAFGASPIIAVDVRDEKLAKAKE----LGA---THTVNAAKEDAVAAIREITGGRGVDV 259 (367)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH----hCC---ceEecCCcccHHHHHHHHhCCCCCCE
Confidence 47778777765 566666777766777 9999999887776643 222 11222111111 112456898
Q ss_pred EEeccccCCCCCHHHHHHHHHHhcCCCcEEEEEe
Q 016921 230 VWSMESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 230 V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~ 263 (380)
|+..- ... ..+..+.+.|+++|.++...
T Consensus 260 vld~v-----g~~-~~~~~~~~~l~~~G~~v~~g 287 (367)
T cd08263 260 VVEAL-----GKP-ETFKLALDVVRDGGRAVVVG 287 (367)
T ss_pred EEEeC-----CCH-HHHHHHHHHHhcCCEEEEEc
Confidence 87531 221 36788999999999988764
No 442
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=74.16 E-value=29 Score=32.50 Aligned_cols=96 Identities=21% Similarity=0.144 Sum_probs=57.5
Q ss_pred CCCEEEEECC-CcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC---CCCCCCccEEEec
Q 016921 158 RPKNVVDVGC-GIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ---PFPDGQFDLVWSM 233 (380)
Q Consensus 158 ~~~~vLDiGc-GtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~---~~~~~~fD~V~~~ 233 (380)
|+.+|-=+|. |-|.++..+|+..|.+|+++|-+..--+.+-+.+ |-. .|+. -.++. .--.+..|.++-.
T Consensus 181 pG~~vgI~GlGGLGh~aVq~AKAMG~rV~vis~~~~kkeea~~~L---GAd---~fv~-~~~d~d~~~~~~~~~dg~~~~ 253 (360)
T KOG0023|consen 181 PGKWVGIVGLGGLGHMAVQYAKAMGMRVTVISTSSKKKEEAIKSL---GAD---VFVD-STEDPDIMKAIMKTTDGGIDT 253 (360)
T ss_pred CCcEEEEecCcccchHHHHHHHHhCcEEEEEeCCchhHHHHHHhc---Ccc---eeEE-ecCCHHHHHHHHHhhcCccee
Confidence 5777766664 4899999999999999999999975555554433 321 1221 11111 0001233433211
Q ss_pred cccCCCCCHHHHHHHHHHhcCCCcEEEEEec
Q 016921 234 ESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (380)
Q Consensus 234 ~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~~ 264 (380)
-. .+ ....+..+.+.||++|.+++...
T Consensus 254 v~--~~--a~~~~~~~~~~lk~~Gt~V~vg~ 280 (360)
T KOG0023|consen 254 VS--NL--AEHALEPLLGLLKVNGTLVLVGL 280 (360)
T ss_pred ee--ec--cccchHHHHHHhhcCCEEEEEeC
Confidence 00 00 12356778899999999999875
No 443
>PRK08251 short chain dehydrogenase; Provisional
Probab=74.03 E-value=22 Score=31.41 Aligned_cols=77 Identities=18% Similarity=0.080 Sum_probs=51.5
Q ss_pred CCEEEEECCCcChHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC----------CCCC
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP----------FPDG 225 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~---~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~----------~~~~ 225 (380)
+.++|=.| |+|.++..+++++ +.+|+.++.++..++.............++.++.+|+.+.. -.-+
T Consensus 2 ~k~vlItG-as~giG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 80 (248)
T PRK08251 2 RQKILITG-ASSGLGAGMAREFAAKGRDLALCARRTDRLEELKAELLARYPGIKVAVAALDVNDHDQVFEVFAEFRDELG 80 (248)
T ss_pred CCEEEEEC-CCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 34677666 5677777777665 78999999998777665555443322246888999988742 0124
Q ss_pred CccEEEecccc
Q 016921 226 QFDLVWSMESG 236 (380)
Q Consensus 226 ~fD~V~~~~~l 236 (380)
..|.|+.+..+
T Consensus 81 ~id~vi~~ag~ 91 (248)
T PRK08251 81 GLDRVIVNAGI 91 (248)
T ss_pred CCCEEEECCCc
Confidence 68988876554
No 444
>cd08282 PFDH_like Pseudomonas putida aldehyde-dismutating formaldehyde dehydrogenase (PFDH). Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. PFDH converts 2 molecules of aldehydes to corresponding carboxylic acid and alcohol. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fo
Probab=73.87 E-value=48 Score=31.65 Aligned_cols=97 Identities=25% Similarity=0.221 Sum_probs=60.1
Q ss_pred CCCEEEEECCC-cChHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC-------CCCCCCcc
Q 016921 158 RPKNVVDVGCG-IGGSSRYLAKKFGA-KCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ-------PFPDGQFD 228 (380)
Q Consensus 158 ~~~~vLDiGcG-tG~~~~~l~~~~~~-~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-------~~~~~~fD 228 (380)
++.+||=.|+| .|..+..+++..|. .++++|.++...+.+++ .|. ..+ +..+. .+..+.+|
T Consensus 176 ~g~~vlI~g~g~vg~~~~~~a~~~G~~~vi~~~~~~~~~~~~~~----~g~----~~v--~~~~~~~~~~i~~~~~~~~d 245 (375)
T cd08282 176 PGDTVAVFGAGPVGLMAAYSAILRGASRVYVVDHVPERLDLAES----IGA----IPI--DFSDGDPVEQILGLEPGGVD 245 (375)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH----cCC----eEe--ccCcccHHHHHHHhhCCCCC
Confidence 47788778886 46666777776675 79999999877766654 221 111 22111 11124688
Q ss_pred EEEeccccCCC-----CCHHHHHHHHHHhcCCCcEEEEEec
Q 016921 229 LVWSMESGEHM-----PDKSKFVSELARVTAPAGTIIIVTW 264 (380)
Q Consensus 229 ~V~~~~~l~~~-----~~~~~~l~~~~r~LkpgG~l~~~~~ 264 (380)
+|+-...-.-. .+....+.++.++|+++|.+.+...
T Consensus 246 ~v~d~~g~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~g~ 286 (375)
T cd08282 246 RAVDCVGYEARDRGGEAQPNLVLNQLIRVTRPGGGIGIVGV 286 (375)
T ss_pred EEEECCCCcccccccccchHHHHHHHHHHhhcCcEEEEEec
Confidence 88754321110 1334568899999999999976553
No 445
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=73.82 E-value=37 Score=30.30 Aligned_cols=100 Identities=12% Similarity=0.063 Sum_probs=59.8
Q ss_pred CCEEEEECCCc-ChHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC--------C--CC
Q 016921 159 PKNVVDVGCGI-GGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP--------F--PD 224 (380)
Q Consensus 159 ~~~vLDiGcGt-G~~~~~l~~~~---~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--------~--~~ 224 (380)
+.++|=.|.++ +..+..+++.+ |.+|+.++.+....+..++ .. ..++.++..|+.+.. . .-
T Consensus 7 ~k~~lItGas~~~gIG~a~a~~la~~G~~Vi~~~r~~~~~~~~~~----~~-~~~~~~~~~Dl~~~~~v~~~~~~~~~~~ 81 (252)
T PRK06079 7 GKKIVVMGVANKRSIAWGCAQAIKDQGATVIYTYQNDRMKKSLQK----LV-DEEDLLVECDVASDESIERAFATIKERV 81 (252)
T ss_pred CCEEEEeCCCCCCchHHHHHHHHHHCCCEEEEecCchHHHHHHHh----hc-cCceeEEeCCCCCHHHHHHHHHHHHHHh
Confidence 67888888764 56666666655 8899988876432222222 11 135778889987631 0 12
Q ss_pred CCccEEEeccccCC-------CC--CH--------------HHHHHHHHHhcCCCcEEEEEe
Q 016921 225 GQFDLVWSMESGEH-------MP--DK--------------SKFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 225 ~~fD~V~~~~~l~~-------~~--~~--------------~~~l~~~~r~LkpgG~l~~~~ 263 (380)
+.+|+++.+..+.. +. +. -.+.+.+...|+.+|.++...
T Consensus 82 g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~in~~~~~~l~~~~~~~~~~~g~Iv~is 143 (252)
T PRK06079 82 GKIDGIVHAIAYAKKEELGGNVTDTSRDGYALAQDISAYSLIAVAKYARPLLNPGASIVTLT 143 (252)
T ss_pred CCCCEEEEcccccccccccCCcccCCHHHHHHHhCcccHHHHHHHHHHHHhcccCceEEEEe
Confidence 57899887655432 11 11 123456667777788776654
No 446
>PRK07814 short chain dehydrogenase; Provisional
Probab=73.48 E-value=23 Score=31.83 Aligned_cols=74 Identities=19% Similarity=0.151 Sum_probs=50.0
Q ss_pred CCEEEEECCCcChHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-----CC-----CC
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-----FP-----DG 225 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~---~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~~-----~~ 225 (380)
+.++|=.|+ +|..+..+++.+ |.+|++++.++..++...+.....+ .++.++..|+.+.. +. -+
T Consensus 10 ~~~vlItGa-sggIG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 86 (263)
T PRK07814 10 DQVAVVTGA-GRGLGAAIALAFAEAGADVLIAARTESQLDEVAEQIRAAG--RRAHVVAADLAHPEATAGLAGQAVEAFG 86 (263)
T ss_pred CCEEEEECC-CChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 677888884 666666666554 8899999999877665555444333 46888889987742 00 14
Q ss_pred CccEEEeccc
Q 016921 226 QFDLVWSMES 235 (380)
Q Consensus 226 ~fD~V~~~~~ 235 (380)
.+|+|+....
T Consensus 87 ~id~vi~~Ag 96 (263)
T PRK07814 87 RLDIVVNNVG 96 (263)
T ss_pred CCCEEEECCC
Confidence 6899886543
No 447
>PRK12742 oxidoreductase; Provisional
Probab=73.42 E-value=52 Score=28.72 Aligned_cols=97 Identities=22% Similarity=0.240 Sum_probs=54.0
Q ss_pred CCEEEEECCCcChHHHHHHHHc---CCEEEEEeC-CHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-----C-CCCCcc
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKF---GAKCQGITL-SPVQAQRANALAAARGLADKVSFQVGDALQQP-----F-PDGQFD 228 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~---~~~v~giD~-s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~-~~~~fD 228 (380)
+.+||=.|+ +|.++..+++.+ |.+|+.+.. +++..+... ... ++.++..|+.+.. + ..+.+|
T Consensus 6 ~k~vlItGa-sggIG~~~a~~l~~~G~~v~~~~~~~~~~~~~l~---~~~----~~~~~~~D~~~~~~~~~~~~~~~~id 77 (237)
T PRK12742 6 GKKVLVLGG-SRGIGAAIVRRFVTDGANVRFTYAGSKDAAERLA---QET----GATAVQTDSADRDAVIDVVRKSGALD 77 (237)
T ss_pred CCEEEEECC-CChHHHHHHHHHHHCCCEEEEecCCCHHHHHHHH---HHh----CCeEEecCCCCHHHHHHHHHHhCCCc
Confidence 667887775 555566665554 778877654 444333221 111 2456777876531 1 124689
Q ss_pred EEEeccccCCCCC-----H---H-----------HHHHHHHHhcCCCcEEEEEe
Q 016921 229 LVWSMESGEHMPD-----K---S-----------KFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 229 ~V~~~~~l~~~~~-----~---~-----------~~l~~~~r~LkpgG~l~~~~ 263 (380)
+++.........+ . + .+++++.+.++.+|.+++..
T Consensus 78 ~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~is 131 (237)
T PRK12742 78 ILVVNAGIAVFGDALELDADDIDRLFKINIHAPYHASVEAARQMPEGGRIIIIG 131 (237)
T ss_pred EEEECCCCCCCCCcccCCHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCeEEEEe
Confidence 8887654433211 1 1 13356667777788877754
No 448
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=73.35 E-value=28 Score=31.91 Aligned_cols=94 Identities=20% Similarity=0.261 Sum_probs=56.1
Q ss_pred EEEEECCCc--ChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHH-------HHcCC-C--------CCeEEEEcCCCCCCC
Q 016921 161 NVVDVGCGI--GGSSRYLAKKFGAKCQGITLSPVQAQRANALA-------AARGL-A--------DKVSFQVGDALQQPF 222 (380)
Q Consensus 161 ~vLDiGcGt--G~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~-------~~~~~-~--------~~v~~~~~d~~~~~~ 222 (380)
+|-=||+|. +.++..++.. +.+|+++|++++.++.+++++ .+.+. . .++.+ ..|...
T Consensus 5 kI~VIG~G~mG~~ia~~la~~-g~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~-~~~~~~--- 79 (282)
T PRK05808 5 KIGVIGAGTMGNGIAQVCAVA-GYDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITG-TTDLDD--- 79 (282)
T ss_pred EEEEEccCHHHHHHHHHHHHC-CCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE-eCCHHH---
Confidence 577788883 4455556554 789999999999987665432 22221 0 12322 223221
Q ss_pred CCCCccEEEeccccCCCCCHHHHHHHHHHhcCCCcEEEE
Q 016921 223 PDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIII 261 (380)
Q Consensus 223 ~~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~ 261 (380)
-+..|+|+.. +...+.-...+++++.+.++|+..+.-
T Consensus 80 -~~~aDlVi~a-v~e~~~~k~~~~~~l~~~~~~~~il~s 116 (282)
T PRK05808 80 -LKDADLVIEA-ATENMDLKKKIFAQLDEIAKPEAILAT 116 (282)
T ss_pred -hccCCeeeec-ccccHHHHHHHHHHHHhhCCCCcEEEE
Confidence 2456877653 222222346889999999998876633
No 449
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=73.07 E-value=8.7 Score=32.28 Aligned_cols=95 Identities=22% Similarity=0.269 Sum_probs=55.1
Q ss_pred CCCEEEEECCC-cChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC--------------C-
Q 016921 158 RPKNVVDVGCG-IGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ--------------P- 221 (380)
Q Consensus 158 ~~~~vLDiGcG-tG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--------------~- 221 (380)
++.+|+=+|.| .|..+..++..+|++++.+|..+..++..+... ..++..+..+. +
T Consensus 19 ~p~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~~~~~~~~~~~--------~~~i~~~~~~~~~~~~~~~~~~~~~~~ 90 (168)
T PF01262_consen 19 PPAKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERPERLRQLESLG--------AYFIEVDYEDHLERKDFDKADYYEHPE 90 (168)
T ss_dssp -T-EEEEESTSHHHHHHHHHHHHTT-EEEEEESSHHHHHHHHHTT--------TEESEETTTTTTTSB-CCHHHCHHHCC
T ss_pred CCeEEEEECCCHHHHHHHHHHhHCCCEEEeccCCHHHHHhhhccc--------CceEEEcccccccccccchhhhhHHHH
Confidence 47899999999 588888888888999999999988776554321 22222221110 1
Q ss_pred -----CC--CCCccEEEeccccCCCCCHHHHHHHHHHhcCCCcEEE
Q 016921 222 -----FP--DGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTII 260 (380)
Q Consensus 222 -----~~--~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~ 260 (380)
|. -..+|+|+.......-..+.-+-++..+.||||..++
T Consensus 91 ~~~~~f~~~i~~~d~vI~~~~~~~~~~P~lvt~~~~~~m~~gsvIv 136 (168)
T PF01262_consen 91 SYESNFAEFIAPADIVIGNGLYWGKRAPRLVTEEMVKSMKPGSVIV 136 (168)
T ss_dssp HHHHHHHHHHHH-SEEEEHHHBTTSS---SBEHHHHHTSSTTEEEE
T ss_pred HhHHHHHHHHhhCcEEeeecccCCCCCCEEEEhHHhhccCCCceEE
Confidence 00 1247887765444333334444567778888765544
No 450
>cd08241 QOR1 Quinone oxidoreductase (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic
Probab=73.02 E-value=9.1 Score=35.08 Aligned_cols=93 Identities=19% Similarity=0.202 Sum_probs=58.4
Q ss_pred CCCEEEEECC--CcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC------CCCCCCccE
Q 016921 158 RPKNVVDVGC--GIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ------PFPDGQFDL 229 (380)
Q Consensus 158 ~~~~vLDiGc--GtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~------~~~~~~fD~ 229 (380)
++..||-.|| +.|..+..+++..|..+++++.++...+.++. .+. . .++..+-.+. ......+|+
T Consensus 139 ~~~~vli~g~~~~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~~----~g~--~-~~~~~~~~~~~~~i~~~~~~~~~d~ 211 (323)
T cd08241 139 PGETVLVLGAAGGVGLAAVQLAKALGARVIAAASSEEKLALARA----LGA--D-HVIDYRDPDLRERVKALTGGRGVDV 211 (323)
T ss_pred CCCEEEEEcCCchHHHHHHHHHHHhCCEEEEEeCCHHHHHHHHH----cCC--c-eeeecCCccHHHHHHHHcCCCCcEE
Confidence 4789999997 35666677777668999999999887766643 232 1 1111111111 012346888
Q ss_pred EEeccccCCCCCHHHHHHHHHHhcCCCcEEEEEec
Q 016921 230 VWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (380)
Q Consensus 230 V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~~ 264 (380)
++.... ...+..+.+.++++|.++....
T Consensus 212 v~~~~g-------~~~~~~~~~~~~~~g~~v~~~~ 239 (323)
T cd08241 212 VYDPVG-------GDVFEASLRSLAWGGRLLVIGF 239 (323)
T ss_pred EEECcc-------HHHHHHHHHhhccCCEEEEEcc
Confidence 875322 1356677889999999887653
No 451
>PRK07063 short chain dehydrogenase; Provisional
Probab=72.87 E-value=24 Score=31.47 Aligned_cols=77 Identities=22% Similarity=0.196 Sum_probs=51.8
Q ss_pred CCEEEEECCCcChHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-----C-----CCC
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-----F-----PDG 225 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~---~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~-----~~~ 225 (380)
+.+||=.|++ |..+..+++.+ |++|+.++.++..++...+.+.......++.++.+|+.+.. + .-+
T Consensus 7 ~k~vlVtGas-~gIG~~~a~~l~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g 85 (260)
T PRK07063 7 GKVALVTGAA-QGIGAAIARAFAREGAAVALADLDAALAERAAAAIARDVAGARVLAVPADVTDAASVAAAVAAAEEAFG 85 (260)
T ss_pred CCEEEEECCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhccCCceEEEEEccCCCHHHHHHHHHHHHHHhC
Confidence 6778888865 45555555544 88999999998877766666554222346888999987642 0 114
Q ss_pred CccEEEecccc
Q 016921 226 QFDLVWSMESG 236 (380)
Q Consensus 226 ~fD~V~~~~~l 236 (380)
.+|.++.+...
T Consensus 86 ~id~li~~ag~ 96 (260)
T PRK07063 86 PLDVLVNNAGI 96 (260)
T ss_pred CCcEEEECCCc
Confidence 68988876554
No 452
>PRK06194 hypothetical protein; Provisional
Probab=72.86 E-value=21 Score=32.50 Aligned_cols=76 Identities=21% Similarity=0.080 Sum_probs=50.0
Q ss_pred CCEEEEECCCcChHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-----C-----CCC
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-----F-----PDG 225 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~---~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~-----~~~ 225 (380)
+.+||=.| |+|.++..+++.+ |.+|+.+|.+...++...+.....+ .++.++.+|+.+.. + ..+
T Consensus 6 ~k~vlVtG-asggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~d~~~~~~~~~~~~~~~g 82 (287)
T PRK06194 6 GKVAVITG-AASGFGLAFARIGAALGMKLVLADVQQDALDRAVAELRAQG--AEVLGVRTDVSDAAQVEALADAALERFG 82 (287)
T ss_pred CCEEEEeC-CccHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhcC--CeEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 56788555 5566666666655 8899999998876665555443333 35788899987631 0 114
Q ss_pred CccEEEeccccC
Q 016921 226 QFDLVWSMESGE 237 (380)
Q Consensus 226 ~fD~V~~~~~l~ 237 (380)
.+|+|+.+....
T Consensus 83 ~id~vi~~Ag~~ 94 (287)
T PRK06194 83 AVHLLFNNAGVG 94 (287)
T ss_pred CCCEEEECCCCC
Confidence 679988776553
No 453
>PRK09291 short chain dehydrogenase; Provisional
Probab=72.83 E-value=24 Score=31.31 Aligned_cols=74 Identities=19% Similarity=0.120 Sum_probs=48.4
Q ss_pred CEEEEECCCcChHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC----CCCCCccEEEe
Q 016921 160 KNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP----FPDGQFDLVWS 232 (380)
Q Consensus 160 ~~vLDiGcGtG~~~~~l~~~~---~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~----~~~~~fD~V~~ 232 (380)
.+||=.|+ +|.++..+++.+ |.+|++++.++...+..+......+ .++.++.+|+.+.. ......|.|+.
T Consensus 3 ~~vlVtGa-sg~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~id~vi~ 79 (257)
T PRK09291 3 KTILITGA-GSGFGREVALRLARKGHNVIAGVQIAPQVTALRAEAARRG--LALRVEKLDLTDAIDRAQAAEWDVDVLLN 79 (257)
T ss_pred CEEEEeCC-CCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CcceEEEeeCCCHHHHHHHhcCCCCEEEE
Confidence 46777775 555666665544 7899999988876665555444433 35888888987642 11247899887
Q ss_pred cccc
Q 016921 233 MESG 236 (380)
Q Consensus 233 ~~~l 236 (380)
+...
T Consensus 80 ~ag~ 83 (257)
T PRK09291 80 NAGI 83 (257)
T ss_pred CCCc
Confidence 6543
No 454
>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase. 6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy
Probab=72.62 E-value=42 Score=31.52 Aligned_cols=93 Identities=22% Similarity=0.261 Sum_probs=58.4
Q ss_pred CCCEEEEECCC-cChHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC-----CCCCCCccEE
Q 016921 158 RPKNVVDVGCG-IGGSSRYLAKKFGA-KCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ-----PFPDGQFDLV 230 (380)
Q Consensus 158 ~~~~vLDiGcG-tG~~~~~l~~~~~~-~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-----~~~~~~fD~V 230 (380)
++.+||-.|+| .|..+..+++..|. .|++++.++...+.+++ .|. ..++...-... ....+.+|+|
T Consensus 175 ~~~~vlI~g~g~vg~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~----~g~---~~~~~~~~~~~~~~~~~~~~~~~d~v 247 (350)
T cd08240 175 ADEPVVIIGAGGLGLMALALLKALGPANIIVVDIDEAKLEAAKA----AGA---DVVVNGSDPDAAKRIIKAAGGGVDAV 247 (350)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH----hCC---cEEecCCCccHHHHHHHHhCCCCcEE
Confidence 47888888876 46666777777777 79999999888777643 232 11111111010 0111268888
Q ss_pred EeccccCCCCCHHHHHHHHHHhcCCCcEEEEEe
Q 016921 231 WSMESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 231 ~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~ 263 (380)
+.... . ...+..+.+.|+++|+++...
T Consensus 248 id~~g-----~-~~~~~~~~~~l~~~g~~v~~g 274 (350)
T cd08240 248 IDFVN-----N-SATASLAFDILAKGGKLVLVG 274 (350)
T ss_pred EECCC-----C-HHHHHHHHHHhhcCCeEEEEC
Confidence 75321 1 346889999999999988764
No 455
>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic
Probab=72.54 E-value=40 Score=31.51 Aligned_cols=93 Identities=27% Similarity=0.364 Sum_probs=56.5
Q ss_pred CCCEEEEECCC-cChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC-CCCCCCccEEEeccc
Q 016921 158 RPKNVVDVGCG-IGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ-PFPDGQFDLVWSMES 235 (380)
Q Consensus 158 ~~~~vLDiGcG-tG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~~~~fD~V~~~~~ 235 (380)
++.+||=.|+| .|..+..+++..+.++++++.++...+.+++ .+. . .++...-... ....+.+|+|+....
T Consensus 169 ~g~~vlV~g~g~vG~~~~~~a~~~G~~v~~~~~~~~~~~~~~~----~g~-~--~vi~~~~~~~~~~~~~~~d~v~~~~g 241 (337)
T cd05283 169 PGKRVGVVGIGGLGHLAVKFAKALGAEVTAFSRSPSKKEDALK----LGA-D--EFIATKDPEAMKKAAGSLDLIIDTVS 241 (337)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHH----cCC-c--EEecCcchhhhhhccCCceEEEECCC
Confidence 36777767775 4666666777668899999999887776643 221 1 1111110010 001356888874322
Q ss_pred cCCCCCHHHHHHHHHHhcCCCcEEEEEe
Q 016921 236 GEHMPDKSKFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 236 l~~~~~~~~~l~~~~r~LkpgG~l~~~~ 263 (380)
- ...+..+.+.|+++|.++...
T Consensus 242 ~------~~~~~~~~~~l~~~G~~v~~g 263 (337)
T cd05283 242 A------SHDLDPYLSLLKPGGTLVLVG 263 (337)
T ss_pred C------cchHHHHHHHhcCCCEEEEEe
Confidence 1 124678889999999988764
No 456
>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown.; PDB: 2K4M_A.
Probab=72.52 E-value=11 Score=30.03 Aligned_cols=90 Identities=23% Similarity=0.371 Sum_probs=49.2
Q ss_pred CCEEEEECCCcCh-HHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCC-CCCccEEEecccc
Q 016921 159 PKNVVDVGCGIGG-SSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFP-DGQFDLVWSMESG 236 (380)
Q Consensus 159 ~~~vLDiGcGtG~-~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~~fD~V~~~~~l 236 (380)
..+|+|||-|.=. .+..|.+. |..|+++|+.+.- + +..+.++..|+.+..+. =...|+|++.-
T Consensus 14 ~~kiVEVGiG~~~~vA~~L~~~-G~dV~~tDi~~~~---a---------~~g~~~v~DDif~P~l~iY~~a~lIYSiR-- 78 (127)
T PF03686_consen 14 YGKIVEVGIGFNPEVAKKLKER-GFDVIATDINPRK---A---------PEGVNFVVDDIFNPNLEIYEGADLIYSIR-- 78 (127)
T ss_dssp SSEEEEET-TT--HHHHHHHHH-S-EEEEE-SS-S----------------STTEE---SSS--HHHHTTEEEEEEES--
T ss_pred CCcEEEECcCCCHHHHHHHHHc-CCcEEEEECcccc---c---------ccCcceeeecccCCCHHHhcCCcEEEEeC--
Confidence 5699999999644 55556655 8999999999861 1 13578999999874311 13578887643
Q ss_pred CCCCCHHHHHHHHHHhcCCCcEEEEEeccC
Q 016921 237 EHMPDKSKFVSELARVTAPAGTIIIVTWCH 266 (380)
Q Consensus 237 ~~~~~~~~~l~~~~r~LkpgG~l~~~~~~~ 266 (380)
--++.+..+.++++.+ |.-+++..++.
T Consensus 79 -PP~El~~~il~lA~~v--~adlii~pL~~ 105 (127)
T PF03686_consen 79 -PPPELQPPILELAKKV--GADLIIRPLGG 105 (127)
T ss_dssp ---TTSHHHHHHHHHHH--T-EEEEE-BTT
T ss_pred -CChHHhHHHHHHHHHh--CCCEEEECCCC
Confidence 3345566666666643 66777776543
No 457
>PF12692 Methyltransf_17: S-adenosyl-L-methionine methyltransferase; PDB: 3IHT_B.
Probab=72.39 E-value=18 Score=29.77 Aligned_cols=113 Identities=17% Similarity=0.149 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEE
Q 016921 136 AAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQV 214 (380)
Q Consensus 136 ~~~~~~~~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~ 214 (380)
.+|+..++........- ..-|||+|=|.|..=..|.+.+ +..|+++|-.-..... -.|+.-.+++
T Consensus 12 taQR~~L~~a~~~v~~~------~G~VlElGLGNGRTydHLRe~~p~R~I~vfDR~l~~hp~--------~~P~~~~~il 77 (160)
T PF12692_consen 12 TAQRDCLNWAAAQVAGL------PGPVLELGLGNGRTYDHLREIFPDRRIYVFDRALACHPS--------STPPEEDLIL 77 (160)
T ss_dssp HHHHHHHHHHHHHTTT--------S-EEEE--TTSHHHHHHHHH--SS-EEEEESS--S-GG--------G---GGGEEE
T ss_pred HHHHHHHHHHHHHhcCC------CCceEEeccCCCccHHHHHHhCCCCeEEEEeeecccCCC--------CCCchHheee
Confidence 34555566665555422 5679999999999999999988 8899999974322111 1223345677
Q ss_pred cCCCCC-C---CCCCCccEEEeccccCCCCCHH-----HHHHHHHHhcCCCcEEEEEe
Q 016921 215 GDALQQ-P---FPDGQFDLVWSMESGEHMPDKS-----KFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 215 ~d~~~~-~---~~~~~fD~V~~~~~l~~~~~~~-----~~l~~~~r~LkpgG~l~~~~ 263 (380)
+|+.+. + .-..+.-++++....++ ++.+ .+-.-+..+|.|||.++-..
T Consensus 78 Gdi~~tl~~~~~~g~~a~laHaD~G~g~-~~~d~a~a~~lspli~~~la~gGi~vS~~ 134 (160)
T PF12692_consen 78 GDIRETLPALARFGAGAALAHADIGTGD-KEKDDATAAWLSPLIAPVLAPGGIMVSGQ 134 (160)
T ss_dssp S-HHHHHHHHHHH-S-EEEEEE----S--HHHHHHHHHHHHHHHGGGEEEEEEEEESS
T ss_pred ccHHHHhHHHHhcCCceEEEEeecCCCC-cchhHHHHHhhhHHHHHHhcCCcEEEeCC
Confidence 777653 2 11233334444333332 2222 12235677899999888755
No 458
>PRK12744 short chain dehydrogenase; Provisional
Probab=72.12 E-value=60 Score=28.87 Aligned_cols=101 Identities=22% Similarity=0.248 Sum_probs=57.6
Q ss_pred CCEEEEECCCcChHHHHHHHHc---CCEEEEEeCC----HHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-----C----
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLS----PVQAQRANALAAARGLADKVSFQVGDALQQP-----F---- 222 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~---~~~v~giD~s----~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~---- 222 (380)
+.+||=.|+ +|.++..+++.+ |.+|+.++.+ .+..+...+.....+ .++.++..|+.+.. +
T Consensus 8 ~k~vlItGa-~~gIG~~~a~~l~~~G~~vv~i~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~ 84 (257)
T PRK12744 8 GKVVLIAGG-AKNLGGLIARDLAAQGAKAVAIHYNSAASKADAEETVAAVKAAG--AKAVAFQADLTTAAAVEKLFDDAK 84 (257)
T ss_pred CcEEEEECC-CchHHHHHHHHHHHCCCcEEEEecCCccchHHHHHHHHHHHHhC--CcEEEEecCcCCHHHHHHHHHHHH
Confidence 567887774 556677776665 6776666543 233333322222222 36888899987641 0
Q ss_pred -CCCCccEEEeccccCC------CC--CHH-----------HHHHHHHHhcCCCcEEEEE
Q 016921 223 -PDGQFDLVWSMESGEH------MP--DKS-----------KFVSELARVTAPAGTIIIV 262 (380)
Q Consensus 223 -~~~~fD~V~~~~~l~~------~~--~~~-----------~~l~~~~r~LkpgG~l~~~ 262 (380)
..+.+|.++....... .. +.. .+++.+.+.++++|.+++.
T Consensus 85 ~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~iv~~ 144 (257)
T PRK12744 85 AAFGRPDIAINTVGKVLKKPIVEISEAEYDEMFAVNSKSAFFFIKEAGRHLNDNGKIVTL 144 (257)
T ss_pred HhhCCCCEEEECCcccCCCCcccCCHHHHHHHHhhhhhHHHHHHHHHHHhhccCCCEEEE
Confidence 1246899887665422 11 111 2456677777777776653
No 459
>COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism]
Probab=72.04 E-value=12 Score=34.44 Aligned_cols=44 Identities=23% Similarity=0.314 Sum_probs=36.3
Q ss_pred CCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHH
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAA 203 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~ 203 (380)
+.+|+-||+|.-...-+++.. .++|.+||+++..++..+-+++.
T Consensus 64 ghrivtigSGGcn~L~ylsr~-Pa~id~VDlN~ahiAln~lklaA 107 (414)
T COG5379 64 GHRIVTIGSGGCNMLAYLSRA-PARIDVVDLNPAHIALNRLKLAA 107 (414)
T ss_pred CcEEEEecCCcchHHHHhhcC-CceeEEEeCCHHHHHHHHHHHHH
Confidence 889999999976666666665 88999999999999887776654
No 460
>PRK06172 short chain dehydrogenase; Provisional
Probab=71.68 E-value=27 Score=31.03 Aligned_cols=75 Identities=21% Similarity=0.233 Sum_probs=50.5
Q ss_pred CCEEEEECCCcChHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-----C-----CCC
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-----F-----PDG 225 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~---~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~-----~~~ 225 (380)
+.+||=.|+ +|.++..+++.+ |.+|+.++.++..++...+.+...+ .++.++.+|+.+.. + ..+
T Consensus 7 ~k~ilItGa-s~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~i~~~~~~~~~~~g 83 (253)
T PRK06172 7 GKVALVTGG-AAGIGRATALAFAREGAKVVVADRDAAGGEETVALIREAG--GEALFVACDVTRDAEVKALVEQTIAAYG 83 (253)
T ss_pred CCEEEEeCC-CchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHHHHhC
Confidence 567888885 455555555544 7899999999887666555554433 46888999987631 0 114
Q ss_pred CccEEEecccc
Q 016921 226 QFDLVWSMESG 236 (380)
Q Consensus 226 ~fD~V~~~~~l 236 (380)
.+|.|+.....
T Consensus 84 ~id~li~~ag~ 94 (253)
T PRK06172 84 RLDYAFNNAGI 94 (253)
T ss_pred CCCEEEECCCC
Confidence 67998876554
No 461
>PF12242 Eno-Rase_NADH_b: NAD(P)H binding domain of trans-2-enoyl-CoA reductase; PDB: 3ZU5_A 3ZU3_A 3ZU4_A 3ZU2_A 3S8M_A.
Probab=71.65 E-value=19 Score=25.96 Aligned_cols=56 Identities=23% Similarity=0.437 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCCEEEEECCCcCh-HHHHHHHHc--CCEEEEEeCC
Q 016921 134 HRAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGG-SSRYLAKKF--GAKCQGITLS 190 (380)
Q Consensus 134 ~~~~~~~~~~~ll~~~~~~~~~~~~~~~vLDiGcGtG~-~~~~l~~~~--~~~v~giD~s 190 (380)
+..-..+.+++.++....+. +..-+.+||-|||.+|. ++..++..+ ++..+||-..
T Consensus 15 HP~GC~~~V~~qI~yvk~~~-~~~GpK~VLViGaStGyGLAsRIa~aFg~gA~TiGV~fE 73 (78)
T PF12242_consen 15 HPVGCARNVENQIEYVKSQG-KINGPKKVLVIGASTGYGLASRIAAAFGAGADTIGVSFE 73 (78)
T ss_dssp -HHHHHHHHHHHHHHHHHC----TS-SEEEEES-SSHHHHHHHHHHHHCC--EEEEEE--
T ss_pred CcHHHHHHHHHHHHHHHhcC-CCCCCceEEEEecCCcccHHHHHHHHhcCCCCEEEEeec
Confidence 44444555555554432211 11236899999999997 445565555 6777777653
No 462
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=71.64 E-value=22 Score=33.06 Aligned_cols=98 Identities=16% Similarity=0.075 Sum_probs=57.7
Q ss_pred CCEEEEECCC--cChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCC----CCeEEEEcCCCCCCCCCCCccEEEe
Q 016921 159 PKNVVDVGCG--IGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLA----DKVSFQVGDALQQPFPDGQFDLVWS 232 (380)
Q Consensus 159 ~~~vLDiGcG--tG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~----~~v~~~~~d~~~~~~~~~~fD~V~~ 232 (380)
..+|+=+|+| .|.++..|++. |..|+.++-+.+.++..++. .|+. ........... .+-+.+.||+|+.
T Consensus 2 ~m~I~IiGaGaiG~~~a~~L~~~-G~~V~lv~r~~~~~~~i~~~---~Gl~i~~~g~~~~~~~~~~-~~~~~~~~D~viv 76 (305)
T PRK05708 2 SMTWHILGAGSLGSLWACRLARA-GLPVRLILRDRQRLAAYQQA---GGLTLVEQGQASLYAIPAE-TADAAEPIHRLLL 76 (305)
T ss_pred CceEEEECCCHHHHHHHHHHHhC-CCCeEEEEechHHHHHHhhc---CCeEEeeCCcceeeccCCC-CcccccccCEEEE
Confidence 3579999999 35566667664 78999999987655544431 1210 00000000000 0112357998876
Q ss_pred ccccCCCCCHHHHHHHHHHhcCCCcEEEEEec
Q 016921 233 MESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (380)
Q Consensus 233 ~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~~ 264 (380)
.-=-+ +...+++.+...+.++..++....
T Consensus 77 ~vK~~---~~~~al~~l~~~l~~~t~vv~lQN 105 (305)
T PRK05708 77 ACKAY---DAEPAVASLAHRLAPGAELLLLQN 105 (305)
T ss_pred ECCHH---hHHHHHHHHHhhCCCCCEEEEEeC
Confidence 42111 456788899999999988777653
No 463
>cd05284 arabinose_DH_like D-arabinose dehydrogenase. This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol d
Probab=71.50 E-value=12 Score=35.01 Aligned_cols=94 Identities=18% Similarity=0.191 Sum_probs=57.0
Q ss_pred CCCEEEEECCC-cChHHHHHHHHcC-CEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCC---CC-C-CCCCCccEE
Q 016921 158 RPKNVVDVGCG-IGGSSRYLAKKFG-AKCQGITLSPVQAQRANALAAARGLADKVSFQVGDAL---QQ-P-FPDGQFDLV 230 (380)
Q Consensus 158 ~~~~vLDiGcG-tG~~~~~l~~~~~-~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~---~~-~-~~~~~fD~V 230 (380)
++.+||=.|+| .|..+..+++..+ .+|++++.++...+.+++ .|. . .++..+-. .+ . .+...+|+|
T Consensus 167 ~~~~vlI~g~~~vg~~~~~~a~~~g~~~v~~~~~~~~~~~~~~~----~g~-~--~~~~~~~~~~~~i~~~~~~~~~dvv 239 (340)
T cd05284 167 PGSTVVVIGVGGLGHIAVQILRALTPATVIAVDRSEEALKLAER----LGA-D--HVLNASDDVVEEVRELTGGRGADAV 239 (340)
T ss_pred CCCEEEEEcCcHHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHHH----hCC-c--EEEcCCccHHHHHHHHhCCCCCCEE
Confidence 37788888855 3455555666666 799999988877665533 232 1 11111110 00 0 123468988
Q ss_pred EeccccCCCCCHHHHHHHHHHhcCCCcEEEEEec
Q 016921 231 WSMESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (380)
Q Consensus 231 ~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~~ 264 (380)
+.... . ...++.+.+.|+++|+++....
T Consensus 240 ld~~g-----~-~~~~~~~~~~l~~~g~~i~~g~ 267 (340)
T cd05284 240 IDFVG-----S-DETLALAAKLLAKGGRYVIVGY 267 (340)
T ss_pred EEcCC-----C-HHHHHHHHHHhhcCCEEEEEcC
Confidence 75322 1 3467888999999999987653
No 464
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=71.41 E-value=30 Score=30.37 Aligned_cols=75 Identities=20% Similarity=0.179 Sum_probs=49.4
Q ss_pred CCEEEEECCCcChHHHHHHHHc---CCEEEEE-eCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-----CC-----C
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKF---GAKCQGI-TLSPVQAQRANALAAARGLADKVSFQVGDALQQP-----FP-----D 224 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~---~~~v~gi-D~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~~-----~ 224 (380)
+.+||=+| |+|..+..+++.+ +.+++.+ +.++...+.........+ .++.++..|+.+.. +. -
T Consensus 5 ~~~ilI~G-asg~iG~~la~~l~~~g~~v~~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~ 81 (247)
T PRK05565 5 GKVAIVTG-ASGGIGRAIAELLAKEGAKVVIAYDINEEAAQELLEEIKEEG--GDAIAVKADVSSEEDVENLVEQIVEKF 81 (247)
T ss_pred CCEEEEeC-CCcHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcC--CeEEEEECCCCCHHHHHHHHHHHHHHh
Confidence 45677776 4677777776654 7889888 888776655555444322 46888999987742 10 1
Q ss_pred CCccEEEecccc
Q 016921 225 GQFDLVWSMESG 236 (380)
Q Consensus 225 ~~fD~V~~~~~l 236 (380)
+.+|+|+.....
T Consensus 82 ~~id~vi~~ag~ 93 (247)
T PRK05565 82 GKIDILVNNAGI 93 (247)
T ss_pred CCCCEEEECCCc
Confidence 368998876544
No 465
>COG0863 DNA modification methylase [DNA replication, recombination, and repair]
Probab=71.38 E-value=20 Score=32.96 Aligned_cols=58 Identities=21% Similarity=0.158 Sum_probs=46.2
Q ss_pred HHHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHc
Q 016921 140 RMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAAR 204 (380)
Q Consensus 140 ~~~~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~ 204 (380)
.++.+++... - .++..|||.=+|+|..+...... +..++|+|+++...+.+.+++...
T Consensus 210 ~l~~r~i~~~-s-----~~~diVlDpf~GsGtt~~aa~~~-~r~~ig~e~~~~y~~~~~~r~~~~ 267 (302)
T COG0863 210 ALIERLIRDY-S-----FPGDIVLDPFAGSGTTGIAAKNL-GRRFIGIEINPEYVEVALKRLQEG 267 (302)
T ss_pred HHHHHHHHhc-C-----CCCCEEeecCCCCChHHHHHHHc-CCceEEEecCHHHHHHHHHHHHhh
Confidence 3555555542 2 34899999999999988876654 889999999999999999998754
No 466
>PRK07904 short chain dehydrogenase; Provisional
Probab=71.23 E-value=28 Score=31.19 Aligned_cols=76 Identities=20% Similarity=0.188 Sum_probs=48.6
Q ss_pred CCEEEEECCCcChHHHHHHHHc----CCEEEEEeCCHHH-HHHHHHHHHHcCCCCCeEEEEcCCCCCC---------CCC
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKF----GAKCQGITLSPVQ-AQRANALAAARGLADKVSFQVGDALQQP---------FPD 224 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~----~~~v~giD~s~~~-~~~a~~~~~~~~~~~~v~~~~~d~~~~~---------~~~ 224 (380)
+.+||=.|++ |.++..+++++ +.+|+.++.++.. ++.+.+.+...+. .++.++.+|+.+.. ...
T Consensus 8 ~~~vlItGas-~giG~~la~~l~~~gg~~V~~~~r~~~~~~~~~~~~l~~~~~-~~v~~~~~D~~~~~~~~~~~~~~~~~ 85 (253)
T PRK07904 8 PQTILLLGGT-SEIGLAICERYLKNAPARVVLAALPDDPRRDAAVAQMKAAGA-SSVEVIDFDALDTDSHPKVIDAAFAG 85 (253)
T ss_pred CcEEEEEcCC-cHHHHHHHHHHHhcCCCeEEEEeCCcchhHHHHHHHHHhcCC-CceEEEEecCCChHHHHHHHHHHHhc
Confidence 6788888874 55666666554 3799999887764 5554444444331 36889999987632 112
Q ss_pred CCccEEEecccc
Q 016921 225 GQFDLVWSMESG 236 (380)
Q Consensus 225 ~~fD~V~~~~~l 236 (380)
+..|+++.....
T Consensus 86 g~id~li~~ag~ 97 (253)
T PRK07904 86 GDVDVAIVAFGL 97 (253)
T ss_pred CCCCEEEEeeec
Confidence 579987765433
No 467
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=71.15 E-value=7.2 Score=36.58 Aligned_cols=64 Identities=20% Similarity=0.281 Sum_probs=45.2
Q ss_pred EEEECCCcChHHHHHHHHcCCEE-EEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCC-CCCccEEEec
Q 016921 162 VVDVGCGIGGSSRYLAKKFGAKC-QGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFP-DGQFDLVWSM 233 (380)
Q Consensus 162 vLDiGcGtG~~~~~l~~~~~~~v-~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~~fD~V~~~ 233 (380)
|+|+-||.|.+..-+.+. |.++ .++|+++...+.-+.+.. . .+..+|+.++... -..+|+++..
T Consensus 1 vidLF~G~GG~~~Gl~~a-G~~~~~a~e~~~~a~~ty~~N~~-----~--~~~~~Di~~~~~~~~~~~dvl~gg 66 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQA-GFKCVFASEIDKYAQKTYEANFG-----N--KVPFGDITKISPSDIPDFDILLGG 66 (315)
T ss_pred CEEEecCccHHHHHHHHc-CCeEEEEEeCCHHHHHHHHHhCC-----C--CCCccChhhhhhhhCCCcCEEEec
Confidence 689999999999888765 6665 579999998887776542 2 3456777765321 1357988764
No 468
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=71.13 E-value=20 Score=37.16 Aligned_cols=91 Identities=19% Similarity=0.142 Sum_probs=57.8
Q ss_pred CCEEEEECCCc-ChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC----CCCCCccEEEec
Q 016921 159 PKNVVDVGCGI-GGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP----FPDGQFDLVWSM 233 (380)
Q Consensus 159 ~~~vLDiGcGt-G~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~----~~~~~fD~V~~~ 233 (380)
..+|+=+|||. |........+.+..++.+|.+++.++.+++ ....++.+|+.+.. ..-++.|++++.
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~--------~g~~v~~GDat~~~~L~~agi~~A~~vvv~ 471 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLLLSSGVKMTVLDHDPDHIETLRK--------FGMKVFYGDATRMDLLESAGAAKAEVLINA 471 (621)
T ss_pred cCcEEEEecChHHHHHHHHHHhCCCCEEEEECCHHHHHHHHh--------cCCeEEEEeCCCHHHHHhcCCCcCCEEEEE
Confidence 46788888873 443333333337789999999999888765 23678999998752 123467877764
Q ss_pred cccCCCCCHH--HHHHHHHHhcCCCcEEEEE
Q 016921 234 ESGEHMPDKS--KFVSELARVTAPAGTIIIV 262 (380)
Q Consensus 234 ~~l~~~~~~~--~~l~~~~r~LkpgG~l~~~ 262 (380)
. +|.+ ..+-...+.+.|.-.+++-
T Consensus 472 ~-----~d~~~n~~i~~~ar~~~p~~~iiaR 497 (621)
T PRK03562 472 I-----DDPQTSLQLVELVKEHFPHLQIIAR 497 (621)
T ss_pred e-----CCHHHHHHHHHHHHHhCCCCeEEEE
Confidence 3 3332 3333455556777666653
No 469
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=71.10 E-value=51 Score=31.15 Aligned_cols=95 Identities=18% Similarity=0.242 Sum_probs=61.3
Q ss_pred CCCEEEEECCCc-ChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCC-CC-----CCCCCCccE
Q 016921 158 RPKNVVDVGCGI-GGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDAL-QQ-----PFPDGQFDL 229 (380)
Q Consensus 158 ~~~~vLDiGcGt-G~~~~~l~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~-~~-----~~~~~~fD~ 229 (380)
++.+|.=+|||. |..+..-|... ...++++|+++.-++.|++. | -..++...-. +. .+-++..|.
T Consensus 185 ~G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~Kl~~A~~f----G---AT~~vn~~~~~~vv~~i~~~T~gG~d~ 257 (366)
T COG1062 185 PGDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLELAKKF----G---ATHFVNPKEVDDVVEAIVELTDGGADY 257 (366)
T ss_pred CCCeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHHHHHHHHhc----C---CceeecchhhhhHHHHHHHhcCCCCCE
Confidence 499999999984 66666666655 46899999999999998863 2 2333332111 10 122335565
Q ss_pred EEeccccCCCCCHHHHHHHHHHhcCCCcEEEEEecc
Q 016921 230 VWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWC 265 (380)
Q Consensus 230 V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~~~ 265 (380)
++- ...+. ..++.....+.++|..++.-..
T Consensus 258 ~~e-----~~G~~-~~~~~al~~~~~~G~~v~iGv~ 287 (366)
T COG1062 258 AFE-----CVGNV-EVMRQALEATHRGGTSVIIGVA 287 (366)
T ss_pred EEE-----ccCCH-HHHHHHHHHHhcCCeEEEEecC
Confidence 532 22232 3788888888889998887654
No 470
>cd08266 Zn_ADH_like1 Alcohol dehydrogenases of the MDR family. This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone
Probab=71.07 E-value=14 Score=34.31 Aligned_cols=90 Identities=20% Similarity=0.219 Sum_probs=57.2
Q ss_pred CCCEEEEECCC--cChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC--------CCCCCc
Q 016921 158 RPKNVVDVGCG--IGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP--------FPDGQF 227 (380)
Q Consensus 158 ~~~~vLDiGcG--tG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--------~~~~~f 227 (380)
++.+||=.|.+ .|..+..++...+.+++.++.++...+.++. .+. ...+ +..+.. .....+
T Consensus 166 ~~~~vlI~g~~~~iG~~~~~~~~~~g~~v~~~~~~~~~~~~~~~----~~~--~~~~---~~~~~~~~~~~~~~~~~~~~ 236 (342)
T cd08266 166 PGETVLVHGAGSGVGSAAIQIAKLFGATVIATAGSEDKLERAKE----LGA--DYVI---DYRKEDFVREVRELTGKRGV 236 (342)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH----cCC--CeEE---ecCChHHHHHHHHHhCCCCC
Confidence 37788888875 5666666777668999999999877666533 222 1111 111110 123468
Q ss_pred cEEEeccccCCCCCHHHHHHHHHHhcCCCcEEEEEe
Q 016921 228 DLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 228 D~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~ 263 (380)
|+++.... ...+..+.+.|+++|.++...
T Consensus 237 d~~i~~~g-------~~~~~~~~~~l~~~G~~v~~~ 265 (342)
T cd08266 237 DVVVEHVG-------AATWEKSLKSLARGGRLVTCG 265 (342)
T ss_pred cEEEECCc-------HHHHHHHHHHhhcCCEEEEEe
Confidence 88876432 135677888999999988764
No 471
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=71.02 E-value=20 Score=33.03 Aligned_cols=97 Identities=22% Similarity=0.220 Sum_probs=59.4
Q ss_pred CEEEEECCCc--ChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHH-------cCCC---------CCeEEEEcCCCCCC
Q 016921 160 KNVVDVGCGI--GGSSRYLAKKFGAKCQGITLSPVQAQRANALAAA-------RGLA---------DKVSFQVGDALQQP 221 (380)
Q Consensus 160 ~~vLDiGcGt--G~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~-------~~~~---------~~v~~~~~d~~~~~ 221 (380)
.+|-=||+|+ +.++..++.. |..|+..|.+++.++.+++++.+ .|.- .++++ ..|...
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~-G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~-~~~~~~-- 81 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARA-GVDVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRF-TTDLGD-- 81 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhC-CCEEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEe-eCCHHH--
Confidence 4788889984 3455555554 89999999999999887766432 1210 12221 223221
Q ss_pred CCCCCccEEEeccccCCCCCHHHHHHHHHHhc-CCCcEEEEEe
Q 016921 222 FPDGQFDLVWSMESGEHMPDKSKFVSELARVT-APAGTIIIVT 263 (380)
Q Consensus 222 ~~~~~fD~V~~~~~l~~~~~~~~~l~~~~r~L-kpgG~l~~~~ 263 (380)
-...|+|+-. +.+...-+..++..+...+ +|+..+.-..
T Consensus 82 --~~~~d~ViEa-v~E~~~~K~~l~~~l~~~~~~~~~il~snT 121 (286)
T PRK07819 82 --FADRQLVIEA-VVEDEAVKTEIFAELDKVVTDPDAVLASNT 121 (286)
T ss_pred --hCCCCEEEEe-cccCHHHHHHHHHHHHHhhCCCCcEEEECC
Confidence 1346777643 3444444567888889888 6776665544
No 472
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=70.97 E-value=29 Score=30.47 Aligned_cols=75 Identities=19% Similarity=0.159 Sum_probs=49.8
Q ss_pred CCEEEEECCCcChHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-----C-----CCC
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-----F-----PDG 225 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~---~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~-----~~~ 225 (380)
+.++|=.| |+|.++..+++++ |.+|++++.++...+.........+ .++.++..|+.+.. + ..+
T Consensus 7 ~~~vlVtG-~sg~iG~~l~~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 83 (239)
T PRK07666 7 GKNALITG-AGRGIGRAVAIALAKEGVNVGLLARTEENLKAVAEEVEAYG--VKVVIATADVSDYEEVTAAIEQLKNELG 83 (239)
T ss_pred CCEEEEEc-CCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhC--CeEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 56777777 4677777776655 8899999998876555444443322 46888899987642 0 013
Q ss_pred CccEEEecccc
Q 016921 226 QFDLVWSMESG 236 (380)
Q Consensus 226 ~fD~V~~~~~l 236 (380)
..|.|+.....
T Consensus 84 ~id~vi~~ag~ 94 (239)
T PRK07666 84 SIDILINNAGI 94 (239)
T ss_pred CccEEEEcCcc
Confidence 68998876544
No 473
>PRK06949 short chain dehydrogenase; Provisional
Probab=70.97 E-value=28 Score=30.91 Aligned_cols=75 Identities=17% Similarity=0.127 Sum_probs=50.8
Q ss_pred CCEEEEECCCcChHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-----C-----CCC
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-----F-----PDG 225 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~---~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~-----~~~ 225 (380)
+.+||=.| |+|.++..+++.+ +.+|++++.+++.++.........+ .++.++..|+.+.. + ..+
T Consensus 9 ~k~ilItG-asg~IG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 85 (258)
T PRK06949 9 GKVALVTG-ASSGLGARFAQVLAQAGAKVVLASRRVERLKELRAEIEAEG--GAAHVVSLDVTDYQSIKAAVAHAETEAG 85 (258)
T ss_pred CCEEEEEC-CCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEecCCCHHHHHHHHHHHHHhcC
Confidence 67788888 5666666666655 7899999999887766655544332 46788888887531 0 124
Q ss_pred CccEEEecccc
Q 016921 226 QFDLVWSMESG 236 (380)
Q Consensus 226 ~fD~V~~~~~l 236 (380)
.+|+|+.....
T Consensus 86 ~~d~li~~ag~ 96 (258)
T PRK06949 86 TIDILVNNSGV 96 (258)
T ss_pred CCCEEEECCCC
Confidence 68988876654
No 474
>PRK07890 short chain dehydrogenase; Provisional
Probab=70.88 E-value=24 Score=31.33 Aligned_cols=75 Identities=20% Similarity=0.089 Sum_probs=49.8
Q ss_pred CCEEEEECCCcChHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-----C-----CCC
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-----F-----PDG 225 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~---~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~-----~~~ 225 (380)
+.+||=.|+ +|.++..+++.+ |++|++++.++.-++.........+ .++.++..|+.+.. + .-+
T Consensus 5 ~k~vlItGa-~~~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~g 81 (258)
T PRK07890 5 GKVVVVSGV-GPGLGRTLAVRAARAGADVVLAARTAERLDEVAAEIDDLG--RRALAVPTDITDEDQCANLVALALERFG 81 (258)
T ss_pred CCEEEEECC-CCcHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHhC--CceEEEecCCCCHHHHHHHHHHHHHHcC
Confidence 667886665 556666665554 8899999999876666555544333 46888999987631 0 114
Q ss_pred CccEEEecccc
Q 016921 226 QFDLVWSMESG 236 (380)
Q Consensus 226 ~fD~V~~~~~l 236 (380)
..|.|+.+...
T Consensus 82 ~~d~vi~~ag~ 92 (258)
T PRK07890 82 RVDALVNNAFR 92 (258)
T ss_pred CccEEEECCcc
Confidence 68998876544
No 475
>PRK05396 tdh L-threonine 3-dehydrogenase; Validated
Probab=70.82 E-value=13 Score=34.83 Aligned_cols=94 Identities=16% Similarity=0.098 Sum_probs=58.7
Q ss_pred CCCEEEEECCCc-ChHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC------CCCCCCccE
Q 016921 158 RPKNVVDVGCGI-GGSSRYLAKKFGA-KCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ------PFPDGQFDL 229 (380)
Q Consensus 158 ~~~~vLDiGcGt-G~~~~~l~~~~~~-~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~------~~~~~~fD~ 229 (380)
++.+||-.|+|. |..+..+++..|. +|++++.++...+.+++ .|.. .++...-.+. ....+.+|+
T Consensus 163 ~g~~vlV~~~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~----lg~~---~~~~~~~~~~~~~~~~~~~~~~~d~ 235 (341)
T PRK05396 163 VGEDVLITGAGPIGIMAAAVAKHVGARHVVITDVNEYRLELARK----MGAT---RAVNVAKEDLRDVMAELGMTEGFDV 235 (341)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH----hCCc---EEecCccccHHHHHHHhcCCCCCCE
Confidence 477887778763 6677777877777 68888888877665543 2321 1111111110 012356898
Q ss_pred EEeccccCCCCCHHHHHHHHHHhcCCCcEEEEEec
Q 016921 230 VWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (380)
Q Consensus 230 V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~~ 264 (380)
|+-... ....+..+.+.|+++|.++....
T Consensus 236 v~d~~g------~~~~~~~~~~~l~~~G~~v~~g~ 264 (341)
T PRK05396 236 GLEMSG------APSAFRQMLDNMNHGGRIAMLGI 264 (341)
T ss_pred EEECCC------CHHHHHHHHHHHhcCCEEEEEec
Confidence 875321 13567888999999999988764
No 476
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=70.56 E-value=25 Score=31.37 Aligned_cols=77 Identities=19% Similarity=0.131 Sum_probs=50.9
Q ss_pred CCEEEEECCCcChHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-----C-----CCC
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-----F-----PDG 225 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~---~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~-----~~~ 225 (380)
+.+||=.| |+|.++..+++.+ |.+|++++.++...+...+.+...+ .++.++.+|+.+.. + ..+
T Consensus 7 ~~~vlItG-asg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 83 (262)
T PRK13394 7 GKTAVVTG-AASGIGKEIALELARAGAAVAIADLNQDGANAVADEINKAG--GKAIGVAMDVTNEDAVNAGIDKVAERFG 83 (262)
T ss_pred CCEEEEEC-CCChHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhcC--ceEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 56777555 5566666666554 7899999999877766666554433 46788899987642 0 114
Q ss_pred CccEEEeccccCC
Q 016921 226 QFDLVWSMESGEH 238 (380)
Q Consensus 226 ~fD~V~~~~~l~~ 238 (380)
+.|+|+......+
T Consensus 84 ~~d~vi~~ag~~~ 96 (262)
T PRK13394 84 SVDILVSNAGIQI 96 (262)
T ss_pred CCCEEEECCccCC
Confidence 5898887665543
No 477
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=70.18 E-value=14 Score=36.31 Aligned_cols=68 Identities=25% Similarity=0.223 Sum_probs=46.8
Q ss_pred CCCEEEEECCCcChHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC----CCCCCccEE
Q 016921 158 RPKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP----FPDGQFDLV 230 (380)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~---~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~----~~~~~fD~V 230 (380)
...+|+=+|+ |.++..+++.+ +..|+.+|.+++.++..++.. ..+.++.+|+.+.. ..-+.+|.|
T Consensus 230 ~~~~iiIiG~--G~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~~------~~~~~i~gd~~~~~~L~~~~~~~a~~v 301 (453)
T PRK09496 230 PVKRVMIVGG--GNIGYYLAKLLEKEGYSVKLIERDPERAEELAEEL------PNTLVLHGDGTDQELLEEEGIDEADAF 301 (453)
T ss_pred CCCEEEEECC--CHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHC------CCCeEEECCCCCHHHHHhcCCccCCEE
Confidence 3678888888 55555555554 789999999999877665532 24678899987641 223568887
Q ss_pred Eec
Q 016921 231 WSM 233 (380)
Q Consensus 231 ~~~ 233 (380)
++.
T Consensus 302 i~~ 304 (453)
T PRK09496 302 IAL 304 (453)
T ss_pred EEC
Confidence 754
No 478
>PRK08703 short chain dehydrogenase; Provisional
Probab=69.92 E-value=30 Score=30.43 Aligned_cols=76 Identities=16% Similarity=0.164 Sum_probs=47.0
Q ss_pred CCEEEEECCCcChHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC---C----------
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP---F---------- 222 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~---~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~---~---------- 222 (380)
+.+||=.|+ +|.++..+++.+ |.+|++++.++...+.....+...+. ..+.++..|+.+.. +
T Consensus 6 ~k~vlItG~-sggiG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~-~~~~~~~~D~~~~~~~~~~~~~~~i~~~ 83 (239)
T PRK08703 6 DKTILVTGA-SQGLGEQVAKAYAAAGATVILVARHQKKLEKVYDAIVEAGH-PEPFAIRFDLMSAEEKEFEQFAATIAEA 83 (239)
T ss_pred CCEEEEECC-CCcHHHHHHHHHHHcCCEEEEEeCChHHHHHHHHHHHHcCC-CCcceEEeeecccchHHHHHHHHHHHHH
Confidence 578888885 566666666554 78999999998776655555443332 23556666664311 0
Q ss_pred CCCCccEEEecccc
Q 016921 223 PDGQFDLVWSMESG 236 (380)
Q Consensus 223 ~~~~fD~V~~~~~l 236 (380)
-.+.+|.|+.....
T Consensus 84 ~~~~id~vi~~ag~ 97 (239)
T PRK08703 84 TQGKLDGIVHCAGY 97 (239)
T ss_pred hCCCCCEEEEeccc
Confidence 01467988865543
No 479
>PRK05872 short chain dehydrogenase; Provisional
Probab=69.53 E-value=43 Score=30.75 Aligned_cols=75 Identities=25% Similarity=0.192 Sum_probs=47.4
Q ss_pred CCEEEEECCCcChHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-----C-----CCC
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-----F-----PDG 225 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~---~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~-----~~~ 225 (380)
+.+||=.|+ +|.++..+++.+ |++|+.++.++..++...+.+. ....+..+..|+.+.. + ..+
T Consensus 9 gk~vlItGa-s~gIG~~ia~~l~~~G~~V~~~~r~~~~l~~~~~~l~---~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g 84 (296)
T PRK05872 9 GKVVVVTGA-ARGIGAELARRLHARGAKLALVDLEEAELAALAAELG---GDDRVLTVVADVTDLAAMQAAAEEAVERFG 84 (296)
T ss_pred CCEEEEECC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhc---CCCcEEEEEecCCCHHHHHHHHHHHHHHcC
Confidence 677887774 455556665554 7899999999877665444332 1234555668877631 0 125
Q ss_pred CccEEEeccccC
Q 016921 226 QFDLVWSMESGE 237 (380)
Q Consensus 226 ~fD~V~~~~~l~ 237 (380)
.+|+|+.+-.+.
T Consensus 85 ~id~vI~nAG~~ 96 (296)
T PRK05872 85 GIDVVVANAGIA 96 (296)
T ss_pred CCCEEEECCCcC
Confidence 789999876653
No 480
>KOG0725 consensus Reductases with broad range of substrate specificities [General function prediction only]
Probab=69.45 E-value=91 Score=28.47 Aligned_cols=79 Identities=22% Similarity=0.106 Sum_probs=56.1
Q ss_pred CCEEEEECCCcCh---HHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCC-CCCeEEEEcCCCCCC----------CC-
Q 016921 159 PKNVVDVGCGIGG---SSRYLAKKFGAKCQGITLSPVQAQRANALAAARGL-ADKVSFQVGDALQQP----------FP- 223 (380)
Q Consensus 159 ~~~vLDiGcGtG~---~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~-~~~v~~~~~d~~~~~----------~~- 223 (380)
+..+|--|.+.|. .+..+++. |++|+..+.+++.++...+.....+. ..++....+|..+.+ ..
T Consensus 8 gkvalVTG~s~GIG~aia~~la~~-Ga~v~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~l~~~~~~~~ 86 (270)
T KOG0725|consen 8 GKVALVTGGSSGIGKAIALLLAKA-GAKVVITGRSEERLEETAQELGGLGYTGGKVLAIVCDVSKEVDVEKLVEFAVEKF 86 (270)
T ss_pred CcEEEEECCCChHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHHHhcCCCCCeeEEEECcCCCHHHHHHHHHHHHHHh
Confidence 6778888877664 33444443 99999999999998887776655443 356888999987542 11
Q ss_pred CCCccEEEeccccCC
Q 016921 224 DGQFDLVWSMESGEH 238 (380)
Q Consensus 224 ~~~fD~V~~~~~l~~ 238 (380)
.+++|+++.+.....
T Consensus 87 ~GkidiLvnnag~~~ 101 (270)
T KOG0725|consen 87 FGKIDILVNNAGALG 101 (270)
T ss_pred CCCCCEEEEcCCcCC
Confidence 478999988765554
No 481
>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=69.43 E-value=34 Score=34.58 Aligned_cols=81 Identities=17% Similarity=0.217 Sum_probs=61.5
Q ss_pred CCEEEEECCCcChHHHHHHHHc----CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-----CCCCCccE
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKF----GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-----FPDGQFDL 229 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~----~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~~~~~fD~ 229 (380)
+++||=-| |+|.++..+.++. ..+++.+|.++..+-.....+...-...++.++.+|..+.. +.+-+.|+
T Consensus 250 gK~vLVTG-agGSiGsel~~qil~~~p~~i~l~~~~E~~~~~i~~el~~~~~~~~~~~~igdVrD~~~~~~~~~~~kvd~ 328 (588)
T COG1086 250 GKTVLVTG-GGGSIGSELCRQILKFNPKEIILFSRDEYKLYLIDMELREKFPELKLRFYIGDVRDRDRVERAMEGHKVDI 328 (588)
T ss_pred CCEEEEeC-CCCcHHHHHHHHHHhcCCCEEEEecCchHHHHHHHHHHHhhCCCcceEEEecccccHHHHHHHHhcCCCce
Confidence 66676555 6788887777765 57899999999887777776655322357899999998852 45567999
Q ss_pred EEeccccCCCC
Q 016921 230 VWSMESGEHMP 240 (380)
Q Consensus 230 V~~~~~l~~~~ 240 (380)
|+...++-|+|
T Consensus 329 VfHAAA~KHVP 339 (588)
T COG1086 329 VFHAAALKHVP 339 (588)
T ss_pred EEEhhhhccCc
Confidence 99999999996
No 482
>PRK07889 enoyl-(acyl carrier protein) reductase; Provisional
Probab=69.39 E-value=61 Score=28.99 Aligned_cols=100 Identities=12% Similarity=-0.007 Sum_probs=61.3
Q ss_pred CCEEEEECCC-cChHHHHHHHHc---CCEEEEEeCCH--HHHHHHHHHHHHcCCCCCeEEEEcCCCCCC----------C
Q 016921 159 PKNVVDVGCG-IGGSSRYLAKKF---GAKCQGITLSP--VQAQRANALAAARGLADKVSFQVGDALQQP----------F 222 (380)
Q Consensus 159 ~~~vLDiGcG-tG~~~~~l~~~~---~~~v~giD~s~--~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~----------~ 222 (380)
+.++|=.|+| ++.++..+++.+ |++|+.++.+. +.++...+. .+ .++.++..|+.+.. -
T Consensus 7 ~k~~lItGa~~s~GIG~a~a~~la~~G~~v~l~~r~~~~~~~~~~~~~---~~--~~~~~~~~Dv~~~~~i~~~~~~~~~ 81 (256)
T PRK07889 7 GKRILVTGVITDSSIAFHVARVAQEQGAEVVLTGFGRALRLTERIAKR---LP--EPAPVLELDVTNEEHLASLADRVRE 81 (256)
T ss_pred CCEEEEeCCCCcchHHHHHHHHHHHCCCEEEEecCccchhHHHHHHHh---cC--CCCcEEeCCCCCHHHHHHHHHHHHH
Confidence 6789999985 566777776655 78999988653 333322221 11 35677888987642 0
Q ss_pred CCCCccEEEeccccCC-------CC--CHH--------------HHHHHHHHhcCCCcEEEEEe
Q 016921 223 PDGQFDLVWSMESGEH-------MP--DKS--------------KFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 223 ~~~~fD~V~~~~~l~~-------~~--~~~--------------~~l~~~~r~LkpgG~l~~~~ 263 (380)
..+.+|+++.+..+.. +. +.+ .+.+.+...++++|.++...
T Consensus 82 ~~g~iD~li~nAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~m~~~g~Iv~is 145 (256)
T PRK07889 82 HVDGLDGVVHSIGFAPQSALGGNFLDAPWEDVATALHVSAYSLKSLAKALLPLMNEGGSIVGLD 145 (256)
T ss_pred HcCCCcEEEEccccccccccCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHhcccCceEEEEe
Confidence 1257999887654431 11 111 24456777788888877654
No 483
>PRK07102 short chain dehydrogenase; Provisional
Probab=68.85 E-value=31 Score=30.45 Aligned_cols=72 Identities=22% Similarity=0.200 Sum_probs=46.9
Q ss_pred EEEEECCCcChHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-----C--CCCCccEE
Q 016921 161 NVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-----F--PDGQFDLV 230 (380)
Q Consensus 161 ~vLDiGcGtG~~~~~l~~~~---~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~--~~~~fD~V 230 (380)
+||=.| |+|.++..+++.+ |.+|++++.++.-.+...+.....+ ..++.++.+|+.+.. + -...+|.+
T Consensus 3 ~vlItG-as~giG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~Dl~~~~~~~~~~~~~~~~~d~v 80 (243)
T PRK07102 3 KILIIG-ATSDIARACARRYAAAGARLYLAARDVERLERLADDLRARG-AVAVSTHELDILDTASHAAFLDSLPALPDIV 80 (243)
T ss_pred EEEEEc-CCcHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhc-CCeEEEEecCCCChHHHHHHHHHHhhcCCEE
Confidence 577666 5677777766665 7899999998876654444333322 247889999988742 0 01357888
Q ss_pred Eecc
Q 016921 231 WSME 234 (380)
Q Consensus 231 ~~~~ 234 (380)
+...
T Consensus 81 v~~a 84 (243)
T PRK07102 81 LIAV 84 (243)
T ss_pred EECC
Confidence 8654
No 484
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=68.83 E-value=33 Score=31.58 Aligned_cols=94 Identities=21% Similarity=0.244 Sum_probs=54.5
Q ss_pred CEEEEECCCc--ChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHc----------CC---------CCCeEEEEcCCC
Q 016921 160 KNVVDVGCGI--GGSSRYLAKKFGAKCQGITLSPVQAQRANALAAAR----------GL---------ADKVSFQVGDAL 218 (380)
Q Consensus 160 ~~vLDiGcGt--G~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~----------~~---------~~~v~~~~~d~~ 218 (380)
.+|.=||+|. +.++..++.. |.+|+++|.+++.++.+++++... +. ..++.+. .|..
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~-G~~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~-~~~~ 81 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFART-GYDVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRTS-TSYE 81 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEee-CCHH
Confidence 4588888884 2344445444 789999999999998776543321 11 0112221 1221
Q ss_pred CCCCCCCCccEEEeccccCCCCCHHHHHHHHHHhcCCCcEEE
Q 016921 219 QQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTII 260 (380)
Q Consensus 219 ~~~~~~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~ 260 (380)
. -...|+|+.. +.........+++++.+.++|+..++
T Consensus 82 ~----~~~aDlViea-v~e~~~~k~~~~~~l~~~~~~~~il~ 118 (291)
T PRK06035 82 S----LSDADFIVEA-VPEKLDLKRKVFAELERNVSPETIIA 118 (291)
T ss_pred H----hCCCCEEEEc-CcCcHHHHHHHHHHHHhhCCCCeEEE
Confidence 1 1346877753 22222235678888888888877554
No 485
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=68.75 E-value=12 Score=31.71 Aligned_cols=91 Identities=23% Similarity=0.213 Sum_probs=51.1
Q ss_pred CCCEEEEECCC-cChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEEecccc
Q 016921 158 RPKNVVDVGCG-IGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESG 236 (380)
Q Consensus 158 ~~~~vLDiGcG-tG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l 236 (380)
.+.+|.=||+| .|.-...+++.+|.+|++.|.+......... . .+ ...++.++ -...|+|+...-+
T Consensus 35 ~g~tvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~~~~~----~----~~--~~~~l~el---l~~aDiv~~~~pl 101 (178)
T PF02826_consen 35 RGKTVGIIGYGRIGRAVARRLKAFGMRVIGYDRSPKPEEGADE----F----GV--EYVSLDEL---LAQADIVSLHLPL 101 (178)
T ss_dssp TTSEEEEESTSHHHHHHHHHHHHTT-EEEEEESSCHHHHHHHH----T----TE--EESSHHHH---HHH-SEEEE-SSS
T ss_pred CCCEEEEEEEcCCcCeEeeeeecCCceeEEecccCChhhhccc----c----cc--eeeehhhh---cchhhhhhhhhcc
Confidence 48899999987 4555555555569999999999876552111 1 12 22233332 1346887764433
Q ss_pred CCCCCHHHHHHHHHHhcCCCcEEEEE
Q 016921 237 EHMPDKSKFVSELARVTAPAGTIIIV 262 (380)
Q Consensus 237 ~~~~~~~~~l~~~~r~LkpgG~l~~~ 262 (380)
.- ....-+=.+....+|+|.+|+-.
T Consensus 102 t~-~T~~li~~~~l~~mk~ga~lvN~ 126 (178)
T PF02826_consen 102 TP-ETRGLINAEFLAKMKPGAVLVNV 126 (178)
T ss_dssp ST-TTTTSBSHHHHHTSTTTEEEEES
T ss_pred cc-ccceeeeeeeeeccccceEEEec
Confidence 11 01111224677888988866653
No 486
>PTZ00354 alcohol dehydrogenase; Provisional
Probab=68.70 E-value=70 Score=29.47 Aligned_cols=93 Identities=22% Similarity=0.211 Sum_probs=59.6
Q ss_pred CCCEEEEECC--CcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCC---C-C--CCCCCCccE
Q 016921 158 RPKNVVDVGC--GIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDAL---Q-Q--PFPDGQFDL 229 (380)
Q Consensus 158 ~~~~vLDiGc--GtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~---~-~--~~~~~~fD~ 229 (380)
++.+||=.|+ +.|..+..+++..|..++.++.+++..+.+++ .|. ...+...+.. . + ......+|+
T Consensus 140 ~~~~vlI~ga~g~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~~----~g~--~~~~~~~~~~~~~~~~~~~~~~~~~d~ 213 (334)
T PTZ00354 140 KGQSVLIHAGASGVGTAAAQLAEKYGAATIITTSSEEKVDFCKK----LAA--IILIRYPDEEGFAPKVKKLTGEKGVNL 213 (334)
T ss_pred CCCEEEEEcCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH----cCC--cEEEecCChhHHHHHHHHHhCCCCceE
Confidence 4778888873 47888888888778888888888887777643 232 1111111110 0 0 012356888
Q ss_pred EEeccccCCCCCHHHHHHHHHHhcCCCcEEEEEe
Q 016921 230 VWSMESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 230 V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~ 263 (380)
++.... ...+..+.+.|+++|.++...
T Consensus 214 ~i~~~~-------~~~~~~~~~~l~~~g~~i~~~ 240 (334)
T PTZ00354 214 VLDCVG-------GSYLSETAEVLAVDGKWIVYG 240 (334)
T ss_pred EEECCc-------hHHHHHHHHHhccCCeEEEEe
Confidence 875421 357788999999999988764
No 487
>PRK06500 short chain dehydrogenase; Provisional
Probab=68.43 E-value=81 Score=27.65 Aligned_cols=72 Identities=22% Similarity=0.223 Sum_probs=44.6
Q ss_pred CCEEEEECCCcChHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC--------C--CCC
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP--------F--PDG 225 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~---~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--------~--~~~ 225 (380)
+.+||=.|+ +|.++..+++.+ |.+|++++.++..++...+.. + .++.++..|..+.. . ..+
T Consensus 6 ~k~vlItGa-sg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~---~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 79 (249)
T PRK06500 6 GKTALITGG-TSGIGLETARQFLAEGARVAITGRDPASLEAARAEL---G--ESALVIRADAGDVAAQKALAQALAEAFG 79 (249)
T ss_pred CCEEEEeCC-CchHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHh---C--CceEEEEecCCCHHHHHHHHHHHHHHhC
Confidence 556776665 455666666554 789999998876554433322 2 35777888876531 0 124
Q ss_pred CccEEEecccc
Q 016921 226 QFDLVWSMESG 236 (380)
Q Consensus 226 ~fD~V~~~~~l 236 (380)
.+|.|+.....
T Consensus 80 ~id~vi~~ag~ 90 (249)
T PRK06500 80 RLDAVFINAGV 90 (249)
T ss_pred CCCEEEECCCC
Confidence 68988866544
No 488
>cd08270 MDR4 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=68.37 E-value=86 Score=28.48 Aligned_cols=88 Identities=24% Similarity=0.282 Sum_probs=58.7
Q ss_pred CCEEEEECC--CcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEEecccc
Q 016921 159 PKNVVDVGC--GIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESG 236 (380)
Q Consensus 159 ~~~vLDiGc--GtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l 236 (380)
+.+||=.|+ +.|..+..+++..|.++++++.+++..+.+++ .|.. ..+ .+..+. .++.+|+++-..
T Consensus 133 ~~~vli~g~~~~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~~----~g~~---~~~-~~~~~~--~~~~~d~vl~~~-- 200 (305)
T cd08270 133 GRRVLVTGASGGVGRFAVQLAALAGAHVVAVVGSPARAEGLRE----LGAA---EVV-VGGSEL--SGAPVDLVVDSV-- 200 (305)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH----cCCc---EEE-eccccc--cCCCceEEEECC--
Confidence 788888887 46777777777778999999998887777654 2321 111 111121 224688887532
Q ss_pred CCCCCHHHHHHHHHHhcCCCcEEEEEe
Q 016921 237 EHMPDKSKFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 237 ~~~~~~~~~l~~~~r~LkpgG~l~~~~ 263 (380)
.. ..+....+.|+++|+++...
T Consensus 201 ---g~--~~~~~~~~~l~~~G~~v~~g 222 (305)
T cd08270 201 ---GG--PQLARALELLAPGGTVVSVG 222 (305)
T ss_pred ---Cc--HHHHHHHHHhcCCCEEEEEe
Confidence 12 35788999999999988765
No 489
>PRK07062 short chain dehydrogenase; Provisional
Probab=68.23 E-value=32 Score=30.78 Aligned_cols=78 Identities=14% Similarity=0.046 Sum_probs=50.6
Q ss_pred CCEEEEECCCcChHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC----------CCCC
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP----------FPDG 225 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~---~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~----------~~~~ 225 (380)
+.++|=.|++ |.++..+++.+ |++|+.++.++.-++...+.........++.++..|+.+.. -.-+
T Consensus 8 ~k~~lItGas-~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g 86 (265)
T PRK07062 8 GRVAVVTGGS-SGIGLATVELLLEAGASVAICGRDEERLASAEARLREKFPGARLLAARCDVLDEADVAAFAAAVEARFG 86 (265)
T ss_pred CCEEEEeCCC-chHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEecCCCHHHHHHHHHHHHHhcC
Confidence 6778888855 44555555554 88999999998777666555544322235778888887642 0125
Q ss_pred CccEEEeccccC
Q 016921 226 QFDLVWSMESGE 237 (380)
Q Consensus 226 ~fD~V~~~~~l~ 237 (380)
.+|.++.+....
T Consensus 87 ~id~li~~Ag~~ 98 (265)
T PRK07062 87 GVDMLVNNAGQG 98 (265)
T ss_pred CCCEEEECCCCC
Confidence 689988765543
No 490
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=68.10 E-value=36 Score=29.96 Aligned_cols=74 Identities=26% Similarity=0.243 Sum_probs=49.0
Q ss_pred CCEEEEECCCcChHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-----C-----CCC
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-----F-----PDG 225 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~---~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~-----~~~ 225 (380)
+.++|=+|+ +|.++..+++.+ |..|+++|.++..++.+.+.+...+ .++.++..|+.+.. + ..+
T Consensus 5 ~~~~lItG~-~g~iG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 81 (253)
T PRK08217 5 DKVIVITGG-AQGLGRAMAEYLAQKGAKLALIDLNQEKLEEAVAECGALG--TEVRGYAANVTDEEDVEATFAQIAEDFG 81 (253)
T ss_pred CCEEEEECC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 678887775 455555555544 7899999999877666555554333 46788888876531 0 014
Q ss_pred CccEEEeccc
Q 016921 226 QFDLVWSMES 235 (380)
Q Consensus 226 ~fD~V~~~~~ 235 (380)
.+|.|+....
T Consensus 82 ~id~vi~~ag 91 (253)
T PRK08217 82 QLNGLINNAG 91 (253)
T ss_pred CCCEEEECCC
Confidence 6899887654
No 491
>cd05288 PGDH Prostaglandin dehydrogenases. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
Probab=67.98 E-value=50 Score=30.51 Aligned_cols=93 Identities=15% Similarity=0.143 Sum_probs=58.8
Q ss_pred CCCEEEEECC--CcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC-----CCCCCCccEE
Q 016921 158 RPKNVVDVGC--GIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ-----PFPDGQFDLV 230 (380)
Q Consensus 158 ~~~~vLDiGc--GtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-----~~~~~~fD~V 230 (380)
++.+||=.|+ +.|..+..+++..|.++++++.++...+.+++.. +. ..++..+-.+. ....+.+|++
T Consensus 145 ~~~~vlI~g~~g~ig~~~~~~a~~~G~~vi~~~~~~~~~~~~~~~~---g~---~~~~~~~~~~~~~~v~~~~~~~~d~v 218 (329)
T cd05288 145 PGETVVVSAAAGAVGSVVGQIAKLLGARVVGIAGSDEKCRWLVEEL---GF---DAAINYKTPDLAEALKEAAPDGIDVY 218 (329)
T ss_pred CCCEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhhc---CC---ceEEecCChhHHHHHHHhccCCceEE
Confidence 4788888873 3677777788877899999999888777665422 21 11121111010 0112468888
Q ss_pred EeccccCCCCCHHHHHHHHHHhcCCCcEEEEEe
Q 016921 231 WSMESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 231 ~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~ 263 (380)
+-... ...++.+.+.|+++|.++...
T Consensus 219 i~~~g-------~~~~~~~~~~l~~~G~~v~~g 244 (329)
T cd05288 219 FDNVG-------GEILDAALTLLNKGGRIALCG 244 (329)
T ss_pred EEcch-------HHHHHHHHHhcCCCceEEEEe
Confidence 74321 247888899999999987654
No 492
>PRK06197 short chain dehydrogenase; Provisional
Probab=67.91 E-value=38 Score=31.23 Aligned_cols=77 Identities=18% Similarity=0.068 Sum_probs=50.2
Q ss_pred CCEEEEECCCcChHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC--------C--CCC
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP--------F--PDG 225 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~---~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--------~--~~~ 225 (380)
+.+||=.| |+|.++..+++.+ |.+|++++.++...+.+.+.+.......++.++.+|+.+.. + ..+
T Consensus 16 ~k~vlItG-as~gIG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~~ 94 (306)
T PRK06197 16 GRVAVVTG-ANTGLGYETAAALAAKGAHVVLAVRNLDKGKAAAARITAATPGADVTLQELDLTSLASVRAAADALRAAYP 94 (306)
T ss_pred CCEEEEcC-CCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEECCCCCHHHHHHHHHHHHhhCC
Confidence 66777665 5666677776655 78999999887766655544433211246888899987742 0 124
Q ss_pred CccEEEecccc
Q 016921 226 QFDLVWSMESG 236 (380)
Q Consensus 226 ~fD~V~~~~~l 236 (380)
.+|+|+.+..+
T Consensus 95 ~iD~li~nAg~ 105 (306)
T PRK06197 95 RIDLLINNAGV 105 (306)
T ss_pred CCCEEEECCcc
Confidence 68998876654
No 493
>PRK09548 PTS system ascorbate-specific transporter subunits IICB; Provisional
Probab=67.82 E-value=25 Score=35.83 Aligned_cols=59 Identities=15% Similarity=0.271 Sum_probs=43.4
Q ss_pred CCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEEeccc
Q 016921 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMES 235 (380)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~ 235 (380)
+..+|| +.||+|.-+..+.+. ..++.+++.|++ +++.+.|+.+.+-..+.+|+|++..-
T Consensus 505 k~mKIL-vaCGsGiGTStmva~----------------kIkk~Lke~GI~--veV~~~~Vsev~s~~~~aDIIVtt~~ 563 (602)
T PRK09548 505 KPVRIL-AVCGQGQGSSMMMKM----------------KIKKYLDKRGIP--IIMDSCAVNDYKGKLETIDIIVCSKH 563 (602)
T ss_pred cccEEE-EECCCCchHHHHHHH----------------HHHHHHHHcCCC--eEEEEechHhCcccCCCCCEEEEccc
Confidence 356777 889999877776654 356667778875 67889998887654567999998653
No 494
>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional
Probab=67.65 E-value=36 Score=30.33 Aligned_cols=77 Identities=14% Similarity=0.002 Sum_probs=47.7
Q ss_pred CCEEEEECCCcChHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-----C-----CCC
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-----F-----PDG 225 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~---~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~-----~~~ 225 (380)
+.+||=.|+ +|.++..+++.+ +..|+.+|.+....+..........-..++.++..|+.+.. + ..+
T Consensus 2 ~k~ilItG~-~~~IG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~~ 80 (259)
T PRK12384 2 NQVAVVIGG-GQTLGAFLCHGLAEEGYRVAVADINSEKAANVAQEINAEYGEGMAYGFGADATSEQSVLALSRGVDEIFG 80 (259)
T ss_pred CCEEEEECC-CcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhcCCceeEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 346787884 566666655544 78999999988766554444332211135888889987631 0 114
Q ss_pred CccEEEecccc
Q 016921 226 QFDLVWSMESG 236 (380)
Q Consensus 226 ~fD~V~~~~~l 236 (380)
..|.|+.....
T Consensus 81 ~id~vv~~ag~ 91 (259)
T PRK12384 81 RVDLLVYNAGI 91 (259)
T ss_pred CCCEEEECCCc
Confidence 68988876543
No 495
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=67.52 E-value=30 Score=26.01 Aligned_cols=74 Identities=22% Similarity=0.262 Sum_probs=44.1
Q ss_pred CCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEEeccccCC
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEH 238 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~ 238 (380)
..+|| +-||+|..+..++++ .++.+++.|++ +++...+..+.+-....+|+|+..-
T Consensus 3 ~~~IL-l~C~~G~sSS~l~~k-----------------~~~~~~~~gi~--~~v~a~~~~~~~~~~~~~Dvill~p---- 58 (95)
T TIGR00853 3 ETNIL-LLCAAGMSTSLLVNK-----------------MNKAAEEYGVP--VKIAAGSYGAAGEKLDDADVVLLAP---- 58 (95)
T ss_pred ccEEE-EECCCchhHHHHHHH-----------------HHHHHHHCCCc--EEEEEecHHHHHhhcCCCCEEEECc----
Confidence 34566 789999776666543 34444556653 6777777655432235689988753
Q ss_pred CCCHHHHHHHHHHhcCCCcE
Q 016921 239 MPDKSKFVSELARVTAPAGT 258 (380)
Q Consensus 239 ~~~~~~~l~~~~r~LkpgG~ 258 (380)
.....+.++...+.+-|.
T Consensus 59 --qi~~~~~~i~~~~~~~~i 76 (95)
T TIGR00853 59 --QVAYMLPDLKKETDKKGI 76 (95)
T ss_pred --hHHHHHHHHHHHhhhcCC
Confidence 333455666666655443
No 496
>cd08284 FDH_like_2 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2. Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typical
Probab=67.42 E-value=72 Score=29.71 Aligned_cols=92 Identities=21% Similarity=0.234 Sum_probs=55.9
Q ss_pred CCCEEEEECCC-cChHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC------CCCCCCccE
Q 016921 158 RPKNVVDVGCG-IGGSSRYLAKKFGA-KCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ------PFPDGQFDL 229 (380)
Q Consensus 158 ~~~~vLDiGcG-tG~~~~~l~~~~~~-~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~------~~~~~~fD~ 229 (380)
++.+||=.|+| .|..+..+++..|. .+++++.++.-.+.+++ .|. ..+..+-.+. -.+.+.+|+
T Consensus 167 ~~~~vlI~g~g~vg~~~~~~a~~~g~~~v~~~~~~~~~~~~~~~----~g~----~~~~~~~~~~~~~l~~~~~~~~~dv 238 (344)
T cd08284 167 PGDTVAVIGCGPVGLCAVLSAQVLGAARVFAVDPVPERLERAAA----LGA----EPINFEDAEPVERVREATEGRGADV 238 (344)
T ss_pred cCCEEEEECCcHHHHHHHHHHHHcCCceEEEEcCCHHHHHHHHH----hCC----eEEecCCcCHHHHHHHHhCCCCCCE
Confidence 47788877765 35555666776685 89999888766655443 231 1121111111 012356898
Q ss_pred EEeccccCCCCCHHHHHHHHHHhcCCCcEEEEEe
Q 016921 230 VWSMESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 230 V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~ 263 (380)
|+-.. .. ...+.+..+.|+++|.++...
T Consensus 239 vid~~-----~~-~~~~~~~~~~l~~~g~~v~~g 266 (344)
T cd08284 239 VLEAV-----GG-AAALDLAFDLVRPGGVISSVG 266 (344)
T ss_pred EEECC-----CC-HHHHHHHHHhcccCCEEEEEC
Confidence 87532 11 346888999999999988764
No 497
>KOG1371 consensus UDP-glucose 4-epimerase/UDP-sulfoquinovose synthase [Cell wall/membrane/envelope biogenesis]
Probab=67.33 E-value=16 Score=34.18 Aligned_cols=78 Identities=22% Similarity=0.171 Sum_probs=48.3
Q ss_pred CCEEEEECCCcChHH----HHHHHHcCCEEEEEeCCHHHHHHHHHHHHH-cCCCCCeEEEEcCCCCCC-----CCCCCcc
Q 016921 159 PKNVVDVGCGIGGSS----RYLAKKFGAKCQGITLSPVQAQRANALAAA-RGLADKVSFQVGDALQQP-----FPDGQFD 228 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~----~~l~~~~~~~v~giD~s~~~~~~a~~~~~~-~~~~~~v~~~~~d~~~~~-----~~~~~fD 228 (380)
+.+||-.| |.|..+ +.|.++ |..|+++|.-......+-++... .+-...+.|+.+|+.+.+ |....||
T Consensus 2 ~~~VLVtG-gaGyiGsht~l~L~~~-gy~v~~vDNl~n~~~~sl~r~~~l~~~~~~v~f~~~Dl~D~~~L~kvF~~~~fd 79 (343)
T KOG1371|consen 2 GKHVLVTG-GAGYIGSHTVLALLKR-GYGVVIVDNLNNSYLESLKRVRQLLGEGKSVFFVEGDLNDAEALEKLFSEVKFD 79 (343)
T ss_pred CcEEEEec-CCcceehHHHHHHHhC-CCcEEEEecccccchhHHHHHHHhcCCCCceEEEEeccCCHHHHHHHHhhcCCc
Confidence 45677776 444433 344443 88999999644433333333322 222468999999998853 5566799
Q ss_pred EEEeccccCC
Q 016921 229 LVWSMESGEH 238 (380)
Q Consensus 229 ~V~~~~~l~~ 238 (380)
.|+...++-.
T Consensus 80 ~V~Hfa~~~~ 89 (343)
T KOG1371|consen 80 AVMHFAALAA 89 (343)
T ss_pred eEEeehhhhc
Confidence 9887655544
No 498
>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall
Probab=67.19 E-value=23 Score=33.70 Aligned_cols=96 Identities=17% Similarity=0.230 Sum_probs=57.3
Q ss_pred CCCEEEEECCC-cChHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEc--CCCC-C-CCCCCCccEEE
Q 016921 158 RPKNVVDVGCG-IGGSSRYLAKKFGA-KCQGITLSPVQAQRANALAAARGLADKVSFQVG--DALQ-Q-PFPDGQFDLVW 231 (380)
Q Consensus 158 ~~~~vLDiGcG-tG~~~~~l~~~~~~-~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~--d~~~-~-~~~~~~fD~V~ 231 (380)
++.+||=.|+| .|..+..+++..|. .+++++.++...+.+++ .|...-+..... +... + ....+.+|+|+
T Consensus 183 ~g~~vlI~g~g~vG~~a~~~a~~~G~~~v~~~~~~~~~~~~~~~----~g~~~~v~~~~~~~~~~~~l~~~~~~~~d~vi 258 (365)
T cd05279 183 PGSTCAVFGLGGVGLSVIMGCKAAGASRIIAVDINKDKFEKAKQ----LGATECINPRDQDKPIVEVLTEMTDGGVDYAF 258 (365)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH----hCCCeecccccccchHHHHHHHHhCCCCcEEE
Confidence 47888888875 45566667776676 48899988888777743 232111111111 1000 0 01124688887
Q ss_pred eccccCCCCCHHHHHHHHHHhcC-CCcEEEEEe
Q 016921 232 SMESGEHMPDKSKFVSELARVTA-PAGTIIIVT 263 (380)
Q Consensus 232 ~~~~l~~~~~~~~~l~~~~r~Lk-pgG~l~~~~ 263 (380)
-... . ...+..+.+.|+ ++|.++...
T Consensus 259 d~~g-----~-~~~~~~~~~~l~~~~G~~v~~g 285 (365)
T cd05279 259 EVIG-----S-ADTLKQALDATRLGGGTSVVVG 285 (365)
T ss_pred ECCC-----C-HHHHHHHHHHhccCCCEEEEEe
Confidence 5321 1 356778899999 999988764
No 499
>cd05289 MDR_like_2 alcohol dehydrogenase and quinone reductase-like medium chain degydrogenases/reductases. Members identified as zinc-dependent alcohol dehydrogenases and quinone oxidoreductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts et
Probab=67.13 E-value=48 Score=29.96 Aligned_cols=91 Identities=18% Similarity=0.176 Sum_probs=54.8
Q ss_pred CCCEEEEECC--CcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC--CCCCCCccEEEec
Q 016921 158 RPKNVVDVGC--GIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ--PFPDGQFDLVWSM 233 (380)
Q Consensus 158 ~~~~vLDiGc--GtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~fD~V~~~ 233 (380)
++.+||=.|+ +.|..+..+++..+.++++++.+. ..+.+++ .+. ..++.....+. ......+|+++..
T Consensus 144 ~~~~vlv~g~~g~~g~~~~~~a~~~g~~v~~~~~~~-~~~~~~~----~g~---~~~~~~~~~~~~~~~~~~~~d~v~~~ 215 (309)
T cd05289 144 AGQTVLIHGAAGGVGSFAVQLAKARGARVIATASAA-NADFLRS----LGA---DEVIDYTKGDFERAAAPGGVDAVLDT 215 (309)
T ss_pred CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEecch-hHHHHHH----cCC---CEEEeCCCCchhhccCCCCceEEEEC
Confidence 4788888885 356666777776688999888766 5444422 232 11221111111 1223468888753
Q ss_pred cccCCCCCHHHHHHHHHHhcCCCcEEEEEe
Q 016921 234 ESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 234 ~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~ 263 (380)
. .. ..+..+.+.|+++|.++...
T Consensus 216 ~-----~~--~~~~~~~~~l~~~g~~v~~g 238 (309)
T cd05289 216 V-----GG--ETLARSLALVKPGGRLVSIA 238 (309)
T ss_pred C-----ch--HHHHHHHHHHhcCcEEEEEc
Confidence 2 12 26788889999999988754
No 500
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=67.03 E-value=24 Score=32.45 Aligned_cols=96 Identities=21% Similarity=0.199 Sum_probs=54.0
Q ss_pred EEEEECCCc--ChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHH-------cCC---------CCCeEEEEcCCCCCCC
Q 016921 161 NVVDVGCGI--GGSSRYLAKKFGAKCQGITLSPVQAQRANALAAA-------RGL---------ADKVSFQVGDALQQPF 222 (380)
Q Consensus 161 ~vLDiGcGt--G~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~-------~~~---------~~~v~~~~~d~~~~~~ 222 (380)
+|.=||+|. +.++..+++. |.+|+.+|.+++.++.+.+.... .+. ..++.+. .+..+.
T Consensus 3 ~V~VIG~G~mG~~iA~~la~~-G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~~~~-- 78 (288)
T PRK09260 3 KLVVVGAGVMGRGIAYVFAVS-GFQTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSYS-LDLKAA-- 78 (288)
T ss_pred EEEEECccHHHHHHHHHHHhC-CCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEe-CcHHHh--
Confidence 577788873 2344445544 78999999999999887654321 110 0112211 222111
Q ss_pred CCCCccEEEeccccCCCCCHHHHHHHHHHhcCCCcEEEEE
Q 016921 223 PDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIV 262 (380)
Q Consensus 223 ~~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~ 262 (380)
-...|+|+..- .....-...++.++.+.++|+..+...
T Consensus 79 -~~~aD~Vi~av-pe~~~~k~~~~~~l~~~~~~~~il~~~ 116 (288)
T PRK09260 79 -VADADLVIEAV-PEKLELKKAVFETADAHAPAECYIATN 116 (288)
T ss_pred -hcCCCEEEEec-cCCHHHHHHHHHHHHhhCCCCcEEEEc
Confidence 13468777532 222222356778888888887765443
Done!