Query 016922
Match_columns 380
No_of_seqs 186 out of 804
Neff 6.5
Searched_HMMs 46136
Date Fri Mar 29 04:01:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016922.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016922hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02435 probable UDP-N-acetyl 100.0 9.2E-95 2E-99 738.8 37.3 373 1-377 1-373 (493)
2 PTZ00339 UDP-N-acetylglucosami 100.0 5.4E-83 1.2E-87 653.6 31.0 343 29-378 2-362 (482)
3 KOG2388 UDP-N-acetylglucosamin 100.0 6.8E-80 1.5E-84 615.9 20.6 346 24-377 2-347 (477)
4 PLN02830 UDP-sugar pyrophospho 100.0 4.2E-78 9E-83 631.3 34.0 336 22-368 24-383 (615)
5 cd04193 UDPGlcNAc_PPase UDPGlc 100.0 8.3E-72 1.8E-76 549.1 27.1 264 106-377 2-265 (323)
6 cd06424 UGGPase UGGPase cataly 100.0 2.8E-70 6.1E-75 533.1 22.5 242 120-370 1-254 (315)
7 cd00897 UGPase_euk Eukaryotic 100.0 3.9E-67 8.4E-72 509.2 24.2 238 118-377 2-242 (300)
8 PF01704 UDPGP: UTP--glucose-1 100.0 1.8E-65 3.9E-70 518.5 21.8 285 64-376 2-296 (420)
9 PLN02474 UTP--glucose-1-phosph 100.0 2.8E-64 6E-69 512.1 27.1 278 65-368 27-309 (469)
10 COG4284 UDP-glucose pyrophosph 100.0 3.5E-63 7.6E-68 496.9 24.2 328 23-379 13-347 (472)
11 cd04180 UGPase_euk_like Eukary 100.0 1.3E-60 2.8E-65 458.7 25.4 236 120-368 1-241 (266)
12 KOG2638 UDP-glucose pyrophosph 100.0 1.9E-44 4E-49 353.5 24.4 277 63-369 53-335 (498)
13 PRK15480 glucose-1-phosphate t 99.4 1.2E-11 2.5E-16 121.0 15.6 182 119-366 3-187 (292)
14 TIGR01105 galF UTP-glucose-1-p 99.3 2.7E-11 5.8E-16 118.7 15.2 188 119-367 3-226 (297)
15 TIGR01207 rmlA glucose-1-phosp 99.3 3.2E-11 6.9E-16 117.5 14.2 179 122-366 2-183 (286)
16 COG1208 GCD1 Nucleoside-diphos 99.3 4.9E-11 1.1E-15 119.7 15.4 179 120-364 2-184 (358)
17 TIGR02092 glgD glucose-1-phosp 99.3 6.5E-11 1.4E-15 118.5 14.1 192 118-367 1-202 (369)
18 PRK05293 glgC glucose-1-phosph 99.3 2E-10 4.3E-15 115.3 17.6 195 118-368 2-205 (380)
19 PRK00844 glgC glucose-1-phosph 99.2 4.7E-10 1E-14 114.2 17.6 203 118-368 4-212 (407)
20 cd06425 M1P_guanylylT_B_like_N 99.2 4.1E-10 8.9E-15 105.4 15.3 183 121-368 2-188 (233)
21 cd02538 G1P_TT_short G1P_TT_sh 99.2 2.8E-10 6.1E-15 107.0 14.0 180 121-366 2-184 (240)
22 PF00483 NTP_transferase: Nucl 99.2 1.3E-10 2.8E-15 109.1 11.4 184 122-368 2-192 (248)
23 PRK10122 GalU regulator GalF; 99.2 6.8E-10 1.5E-14 108.7 15.7 189 119-368 3-227 (297)
24 cd04197 eIF-2B_epsilon_N The N 99.2 6.3E-10 1.4E-14 103.4 14.4 160 121-333 2-178 (217)
25 cd06422 NTP_transferase_like_1 99.1 9.9E-10 2.1E-14 101.8 14.7 176 122-368 2-182 (221)
26 cd06428 M1P_guanylylT_A_like_N 99.1 1.5E-09 3.2E-14 103.4 15.7 185 122-368 1-192 (257)
27 KOG1322 GDP-mannose pyrophosph 99.1 1.7E-09 3.7E-14 105.4 14.9 187 118-367 8-198 (371)
28 cd06915 NTP_transferase_WcbM_l 99.1 2.8E-09 6E-14 97.9 14.8 178 122-367 1-181 (223)
29 cd04189 G1P_TT_long G1P_TT_lon 99.1 3E-09 6.5E-14 99.4 15.0 178 120-366 1-181 (236)
30 PRK00725 glgC glucose-1-phosph 99.1 3.5E-09 7.5E-14 108.6 16.7 200 119-368 15-224 (425)
31 PLN02241 glucose-1-phosphate a 99.1 4.6E-09 1E-13 107.9 17.2 213 119-368 3-231 (436)
32 TIGR02623 G1P_cyt_trans glucos 99.1 3.7E-09 8E-14 100.9 15.1 194 122-366 2-198 (254)
33 cd04181 NTP_transferase NTP_tr 99.1 3.6E-09 7.9E-14 96.9 14.2 178 122-367 1-181 (217)
34 PRK02862 glgC glucose-1-phosph 99.0 7.7E-09 1.7E-13 106.1 17.8 202 119-368 3-225 (429)
35 PRK14356 glmU bifunctional N-a 99.0 9.4E-09 2E-13 105.6 17.8 185 119-370 5-191 (456)
36 COG1207 GlmU N-acetylglucosami 99.0 1.6E-08 3.4E-13 101.8 17.2 187 119-372 2-192 (460)
37 COG1209 RfbA dTDP-glucose pyro 99.0 7.4E-09 1.6E-13 99.0 13.9 177 122-365 3-182 (286)
38 cd02509 GDP-M1P_Guanylyltransf 99.0 2.3E-08 5.1E-13 96.7 17.7 197 121-371 2-210 (274)
39 cd02524 G1P_cytidylyltransfera 99.0 1.4E-08 3E-13 96.6 15.5 189 122-368 1-201 (253)
40 PRK14359 glmU bifunctional N-a 99.0 1.9E-08 4.2E-13 102.4 17.6 180 119-369 2-181 (430)
41 PRK14358 glmU bifunctional N-a 99.0 1.2E-08 2.6E-13 106.2 16.3 182 119-366 7-192 (481)
42 cd06426 NTP_transferase_like_2 99.0 1.5E-08 3.2E-13 93.6 14.6 174 122-367 1-177 (220)
43 PRK14352 glmU bifunctional N-a 99.0 2.2E-08 4.7E-13 104.1 17.1 188 119-369 4-192 (482)
44 TIGR01208 rmlA_long glucose-1- 98.9 1.4E-08 3E-13 101.2 14.7 177 122-366 2-182 (353)
45 TIGR01099 galU UTP-glucose-1-p 98.9 1.8E-08 4E-13 95.7 14.5 204 121-368 2-215 (260)
46 PRK14355 glmU bifunctional N-a 98.9 3.6E-08 7.8E-13 101.7 17.3 185 119-368 3-188 (459)
47 cd02540 GT2_GlmU_N_bac N-termi 98.9 5.4E-08 1.2E-12 90.2 16.2 181 122-368 1-182 (229)
48 PRK13389 UTP--glucose-1-phosph 98.9 4.9E-08 1.1E-12 95.9 16.1 204 115-366 4-228 (302)
49 PRK14353 glmU bifunctional N-a 98.9 6.1E-08 1.3E-12 99.4 16.1 183 118-368 4-189 (446)
50 PRK14360 glmU bifunctional N-a 98.9 8.4E-08 1.8E-12 98.4 16.9 186 120-370 2-188 (450)
51 cd02508 ADP_Glucose_PP ADP-glu 98.8 7.7E-08 1.7E-12 88.2 14.8 139 122-301 1-145 (200)
52 PRK14357 glmU bifunctional N-a 98.8 8.4E-08 1.8E-12 98.4 15.6 177 121-368 2-179 (448)
53 cd02541 UGPase_prokaryotic Pro 98.8 6.8E-08 1.5E-12 92.3 13.7 200 121-368 2-215 (267)
54 PRK05450 3-deoxy-manno-octulos 98.8 1E-07 2.2E-12 89.7 14.6 183 119-368 2-194 (245)
55 TIGR02091 glgC glucose-1-phosp 98.8 1.4E-07 3E-12 94.1 15.9 198 122-368 1-206 (361)
56 cd02517 CMP-KDO-Synthetase CMP 98.7 2.7E-07 5.8E-12 86.6 15.0 181 119-368 1-191 (239)
57 cd02523 PC_cytidylyltransferas 98.7 2.2E-07 4.7E-12 86.6 14.0 175 122-368 1-178 (229)
58 TIGR01173 glmU UDP-N-acetylglu 98.7 4.6E-07 1E-11 92.7 16.7 178 121-368 2-181 (451)
59 PRK14354 glmU bifunctional N-a 98.7 3.2E-07 6.8E-12 94.3 15.3 182 119-367 2-184 (458)
60 TIGR01479 GMP_PMI mannose-1-ph 98.7 5.1E-07 1.1E-11 93.9 16.6 194 121-370 2-211 (468)
61 PRK09451 glmU bifunctional N-a 98.6 8.1E-07 1.8E-11 91.5 16.4 179 119-368 5-185 (456)
62 KOG1460 GDP-mannose pyrophosph 98.6 6.5E-07 1.4E-11 86.6 12.2 191 119-372 2-200 (407)
63 cd04198 eIF-2B_gamma_N The N-t 98.5 1.9E-06 4.1E-11 80.0 13.6 134 121-305 2-139 (214)
64 COG0448 GlgC ADP-glucose pyrop 98.4 2.7E-06 5.9E-11 85.5 12.5 201 118-372 4-213 (393)
65 cd02507 eIF-2B_gamma_N_like Th 98.4 1.5E-05 3.3E-10 74.1 15.8 164 121-334 2-180 (216)
66 cd04183 GT2_BcE_like GT2_BcbE_ 98.4 8.3E-06 1.8E-10 75.9 13.6 169 122-361 1-174 (231)
67 PRK13368 3-deoxy-manno-octulos 98.3 1.9E-05 4.1E-10 74.0 15.5 176 119-367 2-188 (238)
68 PLN02917 CMP-KDO synthetase 98.2 4.8E-05 1E-09 74.6 16.3 181 119-367 47-237 (293)
69 cd02516 CDP-ME_synthetase CDP- 98.2 4.8E-05 1.1E-09 70.0 15.2 40 120-162 1-40 (218)
70 PF12804 NTP_transf_3: MobA-li 98.2 3E-05 6.5E-10 68.0 12.4 106 122-290 1-107 (160)
71 COG1213 Predicted sugar nucleo 98.1 3.3E-05 7.2E-10 72.9 12.4 67 120-205 4-70 (239)
72 TIGR00453 ispD 2-C-methyl-D-er 98.1 0.0001 2.3E-09 68.0 15.6 39 121-162 1-39 (217)
73 cd04182 GT_2_like_f GT_2_like_ 98.1 1.8E-05 4E-10 70.4 9.9 38 120-162 1-38 (186)
74 PRK13385 2-C-methyl-D-erythrit 98.1 4.9E-05 1.1E-09 71.3 12.5 120 119-292 2-121 (230)
75 cd02513 CMP-NeuAc_Synthase CMP 98.1 0.00013 2.7E-09 67.3 14.7 183 119-366 1-189 (223)
76 COG0746 MobA Molybdopterin-gua 98.0 4.3E-05 9.4E-10 70.5 10.6 109 119-294 4-112 (192)
77 TIGR00466 kdsB 3-deoxy-D-manno 97.9 0.00059 1.3E-08 64.7 16.4 180 122-368 2-194 (238)
78 TIGR03310 matur_ygfJ molybdenu 97.8 0.00015 3.3E-09 65.0 10.4 36 122-162 2-37 (188)
79 TIGR00454 conserved hypothetic 97.8 3.7E-05 8.1E-10 70.2 6.2 62 120-202 1-62 (183)
80 PRK15460 cpsB mannose-1-phosph 97.8 0.00097 2.1E-08 69.7 16.6 196 119-372 5-222 (478)
81 cd02503 MobA MobA catalyzes th 97.7 0.00038 8.3E-09 62.2 11.2 37 121-162 2-38 (181)
82 PRK09382 ispDF bifunctional 2- 97.7 0.00091 2E-08 67.9 14.8 41 119-162 5-45 (378)
83 PF01128 IspD: 2-C-methyl-D-er 97.7 9.1E-05 2E-09 69.9 6.5 64 120-202 1-65 (221)
84 COG0836 {ManC} Mannose-1-phosp 97.7 0.002 4.4E-08 63.4 16.0 200 120-371 2-214 (333)
85 PRK14489 putative bifunctional 97.6 0.00082 1.8E-08 67.9 12.7 39 119-161 5-43 (366)
86 TIGR02665 molyb_mobA molybdopt 97.5 0.001 2.2E-08 59.7 11.5 38 120-161 1-38 (186)
87 TIGR03202 pucB xanthine dehydr 97.5 0.00086 1.9E-08 60.8 10.9 36 121-161 2-37 (190)
88 PLN02728 2-C-methyl-D-erythrit 97.5 0.00019 4.1E-09 68.9 6.5 42 118-162 23-64 (252)
89 PRK00155 ispD 2-C-methyl-D-ery 97.5 0.0018 3.9E-08 60.3 12.4 41 119-162 3-43 (227)
90 PRK00560 molybdopterin-guanine 97.2 0.00036 7.8E-09 64.2 4.2 40 118-162 7-47 (196)
91 cd02518 GT2_SpsF SpsF is a gly 97.1 0.0078 1.7E-07 56.3 12.0 35 122-162 2-36 (233)
92 COG2266 GTP:adenosylcobinamide 97.0 0.0012 2.6E-08 59.8 5.7 61 120-202 1-61 (177)
93 PRK02726 molybdopterin-guanine 96.9 0.00072 1.6E-08 62.3 3.7 38 119-161 7-44 (200)
94 PRK00317 mobA molybdopterin-gu 96.9 0.00083 1.8E-08 61.0 4.0 39 119-161 3-41 (193)
95 COG1210 GalU UDP-glucose pyrop 96.9 0.02 4.2E-07 55.6 13.1 168 122-333 7-194 (291)
96 COG1211 IspD 4-diphosphocytidy 96.8 0.0026 5.6E-08 60.4 6.4 66 118-201 3-68 (230)
97 PRK14500 putative bifunctional 96.8 0.0014 3.1E-08 65.8 4.3 40 118-162 159-198 (346)
98 PRK14490 putative bifunctional 96.7 0.0029 6.2E-08 64.0 5.8 39 118-161 173-211 (369)
99 COG4750 LicC CTP:phosphocholin 96.4 0.0053 1.2E-07 56.5 5.4 61 121-202 2-65 (231)
100 TIGR03584 PseF pseudaminic aci 95.5 0.32 7E-06 45.6 13.1 132 122-305 2-135 (222)
101 COG2068 Uncharacterized MobA-r 92.2 0.2 4.2E-06 46.6 4.4 119 117-290 3-121 (199)
102 PF14134 DUF4301: Domain of un 90.7 2.4 5.3E-05 44.4 11.0 65 205-279 229-296 (513)
103 COG1212 KdsB CMP-2-keto-3-deox 83.4 4.2 9.2E-05 38.7 7.1 91 119-226 3-107 (247)
104 KOG1462 Translation initiation 78.4 2.1 4.5E-05 43.7 3.4 72 119-211 9-83 (433)
105 PF02348 CTP_transf_3: Cytidyl 72.3 11 0.00024 34.3 6.4 89 121-226 1-104 (217)
106 PF14969 DUF4508: Domain of un 69.6 4.8 0.0001 33.3 2.9 37 37-73 59-96 (98)
107 COG1861 SpsF Spore coat polysa 62.8 23 0.00051 33.7 6.5 118 118-298 2-125 (241)
108 PRK10834 vancomycin high tempe 44.6 11 0.00024 36.1 1.2 85 109-209 71-163 (239)
109 TIGR03092 SASP_sspI small, aci 41.5 27 0.00059 26.7 2.6 40 22-61 12-62 (65)
110 CHL00195 ycf46 Ycf46; Provisio 40.9 3.5E+02 0.0075 28.7 11.8 51 22-76 141-191 (489)
111 KOG0734 AAA+-type ATPase conta 39.0 25 0.00055 37.8 2.9 54 130-202 329-391 (752)
112 PF14098 SSPI: Small, acid-sol 37.3 38 0.00083 25.9 2.9 40 22-61 13-63 (65)
113 PF13106 DUF3961: Domain of un 37.0 19 0.00042 24.8 1.1 14 203-216 4-20 (40)
114 COG1535 EntB Isochorismate hyd 36.1 3.6E+02 0.0079 25.1 9.5 94 149-274 49-151 (218)
115 PRK02955 small acid-soluble sp 34.3 44 0.00096 25.8 2.8 40 22-61 15-65 (68)
116 PF09655 Nitr_red_assoc: Conse 33.7 80 0.0017 28.0 4.7 28 30-57 21-48 (144)
117 TIGR02664 nitr_red_assoc conse 31.8 1.2E+02 0.0025 27.0 5.4 28 31-58 22-49 (145)
118 PF02216 B: B domain; InterPr 25.2 1.1E+02 0.0023 22.6 3.3 32 43-75 18-49 (54)
119 PF11460 DUF3007: Protein of u 24.9 60 0.0013 27.2 2.3 27 34-60 77-103 (104)
120 PF13945 NST1: Salt tolerance 21.1 42 0.00091 31.1 0.8 32 37-72 104-135 (190)
121 TIGR02180 GRX_euk Glutaredoxin 21.0 3.5E+02 0.0076 20.0 6.1 56 182-261 28-83 (84)
No 1
>PLN02435 probable UDP-N-acetylglucosamine pyrophosphorylase
Probab=100.00 E-value=9.2e-95 Score=738.84 Aligned_cols=373 Identities=85% Similarity=1.354 Sum_probs=341.0
Q ss_pred CCCCceeeeccCCCCCCCCCCCCCHHHHHHHHHHCCCchhccccccCCHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC
Q 016922 1 MREPTVVGTESNGGSVGSIAQSPPPQALLERLKDYGQEDAFALWDELSPDERDHLVKDIESLDLPRVDRIIRCSLRSQGL 80 (380)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gQ~Hll~~~~~l~~~ek~~L~~ql~~id~~~~~~~~~~~~~~~~~ 80 (380)
|.||.|-... +..-++|.. .+.++++++|.++||+|||++|++|+++||++|++||.++|++++.+++++++.+.+.
T Consensus 1 ~~~~~~~~~~--~~~~~~~~~-~~~~~l~~~l~~~gQ~HLl~~w~~ls~~e~~~L~~qL~~iD~~~l~~~~~~~~~~~~~ 77 (493)
T PLN02435 1 MKEPVVENEA--VTAPGPWGA-APPQALLERLKDYGQEDAFALWDELSPEERDLLVRDIESLDLPRIDRIIRCSLRSQGL 77 (493)
T ss_pred CCcccccccc--CCCCCCCCc-ccHHHHHHHHHHcChHHHHHhhhhCCHHHHHHHHHHHHhcCHHHHHHHHHHHhhccCC
Confidence 7888664332 333467765 4566899999999999999999999999999999999999999999999888765555
Q ss_pred CCCccccCCCCCccccccCChHHHHHHHHHhhhhhcCCCEEEEEecCCCccccCCCCCCccccccCCCCCccHHHHHHHH
Q 016922 81 PVAAIEPVPERSVSTVEERTMDERERWWKMGLKAISDGKLAVLLLSGGQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERI 160 (380)
Q Consensus 81 ~~~~~~p~p~~~~~~~~~~~~~~~~~~~~~G~~~i~~gkvavvlLAGG~GTRLg~~~PKg~~~i~l~s~ksllq~~~e~i 160 (380)
+++.++|+|++.+.++++.+.++.++|+++|+++|++||||+|+||||||||||+++||||+||++|++|||||++++||
T Consensus 78 ~~~~i~P~p~~~~~~~~~~~~~~~~~~~~~Gl~~I~~gkvavvlLAGGqGTRLG~~~PKg~~~Iglps~kslfql~~e~I 157 (493)
T PLN02435 78 PVPAIEPVPENSVSTVEERTPEDRERWWKMGLKAISEGKLAVVLLSGGQGTRLGSSDPKGCFNIGLPSGKSLFQLQAERI 157 (493)
T ss_pred chhccCCCChhhccchhccChHHHHHHHHHHHHHHhcCCEEEEEeCCCcccccCCCCCccceecCCCCCCcHHHHHHHHH
Confidence 77889999988888887776677788999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhcCCCCCCCCceeEEEEcCCCchHHHHHHHhhcCCCCCCCCceEEEEeCCeeeEecCCcccccCCCcccc
Q 016922 161 LCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRKYFEGHKYFGLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAK 240 (380)
Q Consensus 161 ~~l~~la~~~~~~~~~~~~~~ip~~IMTS~~t~e~t~~~f~~~~~FGl~~~~V~~f~Q~~~P~~~~~gki~l~~~~~i~~ 240 (380)
+++|++|.++.+. ++++++.||||||||+.||++|++||++|+|||+++++|+||+|+++||++.+|+++|++++++++
T Consensus 158 ~~lq~la~~~~~~-~~~~~~~IPl~IMTS~~T~~~T~~ff~~~~~FGl~~~~V~fF~Q~~~P~~~~dg~i~l~~~~~i~~ 236 (493)
T PLN02435 158 LCVQRLAAQASSE-GPGRPVTIHWYIMTSPFTDEATRKFFESHKYFGLEADQVTFFQQGTLPCVSKDGKFIMETPFKVAK 236 (493)
T ss_pred HHHHHHHHhhccc-ccCCCCceeEEEeCCcchhHHHHHHHHhCCCCCCCccceEEEecCCcceECCCCCcccCCCccccc
Confidence 9999999775532 112578899999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCchhhHHHhhCChHHHHHHCCCeEEEEEcCCCcccccCCHHHHHHHHHhCCceEEEEeecCCCCcccceEEEEcCC
Q 016922 241 APDGNGGVYSALKSSKLLEDMATRGIKYIDCYGVDNALVRVADPTFLGYFIDKGVSAGAKVVRKAYPQEKVGVFVRRGKG 320 (380)
Q Consensus 241 ~P~GnGgi~~aL~~~g~l~~l~~~Gi~yi~v~~vDN~L~~~~Dp~~lG~~~~~~~d~~~kvv~k~~p~e~vGvl~~~~~~ 320 (380)
+|+||||+|.||+++|++++|.++|++|+||+||||+|++++||.|||||+.+++||++||++|++|+|+||+||+.+.+
T Consensus 237 ~P~GnGgiy~aL~~sG~Ld~l~~~Gi~yi~v~~vDN~L~~~~DP~flG~~~~~~~d~~~kVv~K~~~~EkvG~i~~~~~~ 316 (493)
T PLN02435 237 APDGNGGVYAALKSSRLLEDMASRGIKYVDCYGVDNALVRVADPTFLGYFIDKGVASAAKVVRKAYPQEKVGVFVRRGKG 316 (493)
T ss_pred CCCCCcHHHHHHHHCCcHHHHHhcCCEEEEEEecccccccccCHHHHHHHHhcCCceEEEeeecCCCCCceeEEEEecCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999997568
Q ss_pred CCeEEEEecccChhhhhhhccCCCcceeccccccchhccHHHHHHHHhccccCCCCC
Q 016922 321 GPLTVVEYSELDPSLASAINQETGRLRFCWSNVCLHMFTLDFLNQVANGLEKDSVLL 377 (380)
Q Consensus 321 g~~~vvEYsel~~~~~~~~~~~~g~l~f~~gNi~~~~f~l~fL~~~~~~~~~~~~~~ 377 (380)
|+++||||+||++++++.+++++|.+.|++||||||+||++||+++++.++..++||
T Consensus 317 g~~~vvEYsEl~~~~~~~~~~~~g~L~~~~gnI~~h~fs~~fL~~~~~~~~~~l~~H 373 (493)
T PLN02435 317 GPLTVVEYSELDQAMASAINQQTGRLRYCWSNVCLHMFTLDFLNQVANGLEKDSIYH 373 (493)
T ss_pred CCEEEEEeccCCHHHHhccCccccccccchhhHHHhhccHHHHHHHHHhhhhcCCce
Confidence 999999999999999887776679999999999999999999999998887777775
No 2
>PTZ00339 UDP-N-acetylglucosamine pyrophosphorylase; Provisional
Probab=100.00 E-value=5.4e-83 Score=653.59 Aligned_cols=343 Identities=34% Similarity=0.568 Sum_probs=310.0
Q ss_pred HHHHHHCCCchhccccccCCHHHHHHHHHHH-h---cCChHHHHHHHHHHHhcC---C--------CCCCccccCCCCCc
Q 016922 29 LERLKDYGQEDAFALWDELSPDERDHLVKDI-E---SLDLPRVDRIIRCSLRSQ---G--------LPVAAIEPVPERSV 93 (380)
Q Consensus 29 ~~~l~~~gQ~Hll~~~~~l~~~ek~~L~~ql-~---~id~~~~~~~~~~~~~~~---~--------~~~~~~~p~p~~~~ 93 (380)
+++|.++||+|||+||++|+++||++|++|| + .+|++.++.+++.+.... . .....++|+|...+
T Consensus 2 ~~~l~~~gQ~hl~~~~~~l~~~e~~~l~~ql~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 81 (482)
T PTZ00339 2 LKVLTGDGQDHLREALKRRSEGEFTPLATQILSSLTNVDFKHRNAVLEPKLEEYNAEAPVGIDIDSIHNCNIEPPNNNTF 81 (482)
T ss_pred hhhhhhcCHHHHHHHHHhCCHHHHHHHHHHHHHHhhccCHHHHHHHHHHHhhhhhcccccccccccccccccCCCCcccc
Confidence 5789999999999999999999999999999 5 899999999998765321 1 12356899998777
Q ss_pred cccccCChHHHHHHHHHhhhhhcCCCEEEEEecCCCccccCCCCCCccccccCCCCCccHHHHHHHHHHHHHHHHhhhcC
Q 016922 94 STVEERTMDERERWWKMGLKAISDGKLAVLLLSGGQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSE 173 (380)
Q Consensus 94 ~~~~~~~~~~~~~~~~~G~~~i~~gkvavvlLAGG~GTRLg~~~PKg~~~i~l~s~ksllq~~~e~i~~l~~la~~~~~~ 173 (380)
.++.+ ..++..+|+++|+++|++||||+|+||||+|||||++.||||+||+++++|||||++++||++++.++.++.+.
T Consensus 82 ~~~~~-~~~~~~~~~~~Gl~~i~~gkvavViLAGG~GTRLg~~~PK~ll~I~~~~gksL~q~~~erI~~l~~~~~~~~~~ 160 (482)
T PTZ00339 82 IDIYE-KEKERKELKESGLEIIKKGEVAVLILAGGLGTRLGSDKPKGLLECTPVKKKTLFQFHCEKVRRLEEMAVAVSGG 160 (482)
T ss_pred ccccc-CHHHHHHHHHhHHHHHhcCCeEEEEECCCCcCcCCCCCCCeEeeecCCCCccHHHHHHHHHHHHhhhhhccccc
Confidence 77666 45677899999999999999999999999999999999999999999999999999999999999998654431
Q ss_pred CCCCCCCceeEEEEcCCCchHHHHHHHhhcCCCCCCCCceEEEEeCCeeeEec-CCcccccCCCccccccCCCchhhHHH
Q 016922 174 GGGSGSAAIHWYIMTSPFTDDATRKYFEGHKYFGLESDQVTFFQQGTIPCVSK-DGRFIMETPYKVAKAPDGNGGVYSAL 252 (380)
Q Consensus 174 ~~~~~~~~ip~~IMTS~~t~e~t~~~f~~~~~FGl~~~~V~~f~Q~~~P~~~~-~gki~l~~~~~i~~~P~GnGgi~~aL 252 (380)
.+++.||||||||++||+.|++||++|+|||+++++|+||+|+++||++. +|+++++++++++++|+||||+|.+|
T Consensus 161 ---~~~~~Ip~~IMTS~~t~~~t~~~f~~~~~FGl~~~~V~~F~Q~~~P~i~~~~g~ill~~~~~i~~~P~GnGgiy~aL 237 (482)
T PTZ00339 161 ---GDDPTIYILVLTSSFNHDQTRQFLEENNFFGLDKEQVIFFKQSSLPCYDENTGRFIMSSQGSLCTAPGGNGDVFKAL 237 (482)
T ss_pred ---ccCCCCCEEEEeCcchHHHHHHHHHhccccCCCcccEEEEecCCcceEecCCCCcccCCCCceeeCCCCCcHHHHHH
Confidence 13567999999999999999999999999999999999999999999985 59999999999999999999999999
Q ss_pred hhCChHHHHHHCCCeEEEEEcCCCcccccCCHHHHHHHHHhCC-ceEEEEeecCCCCcccceEEEEcCCCCeEEEEeccc
Q 016922 253 KSSKLLEDMATRGIKYIDCYGVDNALVRVADPTFLGYFIDKGV-SAGAKVVRKAYPQEKVGVFVRRGKGGPLTVVEYSEL 331 (380)
Q Consensus 253 ~~~g~l~~l~~~Gi~yi~v~~vDN~L~~~~Dp~~lG~~~~~~~-d~~~kvv~k~~p~e~vGvl~~~~~~g~~~vvEYsel 331 (380)
+++|++++|.++|++|+||+||||+|++++||.|||||+++++ +++.+|+ |+.|+|+||++|+. +|+++||||+||
T Consensus 238 ~~sG~Ld~l~~~Gi~yi~v~~vDN~L~k~~DP~flG~~~~~~~~~~~~kvv-k~~~~EkvG~~~~~--~g~~~vvEYsEi 314 (482)
T PTZ00339 238 AKCSELMDIVRKGIKYVQVISIDNILAKVLDPEFIGLASSFPAHDVLNKCV-KREDDESVGVFCLK--DYEWQVVEYTEI 314 (482)
T ss_pred HHCCcHHHHHHcCCEEEEEEecCcccccccCHHHhHHHHHCCchhheeeee-cCCCCCceeEEEEe--CCcccEEEEecc
Confidence 9999999999999999999999999999999999999999999 9999998 78899999999997 789999999999
Q ss_pred ChhhhhhhccCCCcceeccccccchhccHHHHHHHHh-ccccCCCCCC
Q 016922 332 DPSLASAINQETGRLRFCWSNVCLHMFTLDFLNQVAN-GLEKDSVLLP 378 (380)
Q Consensus 332 ~~~~~~~~~~~~g~l~f~~gNi~~~~f~l~fL~~~~~-~~~~~~~~~~ 378 (380)
++++++..++.+|.+.|++||||||+|+++||+++++ .++..+++|.
T Consensus 315 ~~~~~~~~~~~~g~l~f~~gnI~~h~fsl~fl~~~~~~~~~~~l~~H~ 362 (482)
T PTZ00339 315 NERILNNDELLTGELAFNYGNICSHIFSLDFLKKVAANRLYESTPYHA 362 (482)
T ss_pred ChhhhhcccccCCeecccccceEEEEEEHHHHHHHhhhhhhhcCCcee
Confidence 9999887665569999999999999999999999975 4555677764
No 3
>KOG2388 consensus UDP-N-acetylglucosamine pyrophosphorylase [Cell wall/membrane/envelope biogenesis]
Probab=100.00 E-value=6.8e-80 Score=615.88 Aligned_cols=346 Identities=51% Similarity=0.850 Sum_probs=319.3
Q ss_pred CHHHHHHHHHHCCCchhccccccCCHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCccccCCCCCccccccCChHH
Q 016922 24 PPQALLERLKDYGQEDAFALWDELSPDERDHLVKDIESLDLPRVDRIIRCSLRSQGLPVAAIEPVPERSVSTVEERTMDE 103 (380)
Q Consensus 24 ~~~~l~~~l~~~gQ~Hll~~~~~l~~~ek~~L~~ql~~id~~~~~~~~~~~~~~~~~~~~~~~p~p~~~~~~~~~~~~~~ 103 (380)
++..+..+|.++||+|||++|++|++++|..|++|++.+|++++..+++...+....+...+.|+|+.....+.....++
T Consensus 2 ~~~~~~~~l~~~Gq~~l~~~w~eL~~~~~~~l~~~ie~l~l~~~~~~~~~~a~~~~~~~~~~~p~p~~~~~~~~~~~~~d 81 (477)
T KOG2388|consen 2 DRTKLHLILLEAGQSHLFTQWPELSEADKESLLDQIEVLNLSRIHGLQRISANEDSKPVGEIRPVPESKSWPLKERGLDD 81 (477)
T ss_pred chhHHHHHHHHcChHhHhhhchhcCHHHHHHHHHHHHhhcccccchhhhcChhhccCcccccCCCCccccceecccCchh
Confidence 45678899999999999999999999999999999999999999888873323333455778898887766666666677
Q ss_pred HHHHHHHhhhhhcCCCEEEEEecCCCccccCCCCCCccccccCCCCCccHHHHHHHHHHHHHHHHhhhcCCCCCCCCcee
Q 016922 104 RERWWKMGLKAISDGKLAVLLLSGGQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIH 183 (380)
Q Consensus 104 ~~~~~~~G~~~i~~gkvavvlLAGG~GTRLg~~~PKg~~~i~l~s~ksllq~~~e~i~~l~~la~~~~~~~~~~~~~~ip 183 (380)
.++|+..|+++|++|++|+++||||||||||++.||||+|+|+|+++|+||+++|+|+++|.+|....+ .++.||
T Consensus 82 ~d~~~~~G~~~i~~~~~a~~llaGgqgtRLg~~~pkg~~~~G~~~~~slf~~qae~il~lq~~a~~~~~-----~~~~I~ 156 (477)
T KOG2388|consen 82 VDQWWKEGLRLIAEGKVAVVLLAGGQGTRLGSSGPKGCYPIGLPSGKSLFQIQAERILKLQELASMAVS-----DGVDIP 156 (477)
T ss_pred hhHHHhcChhhhhcCcceEEEeccCceeeeccCCCcceeecCCccccchhhhhHHHHHHHHHHHhhhhc-----cCCceE
Confidence 778999999999999999999999999999999999999999999999999999999999999887665 457899
Q ss_pred EEEEcCCCchHHHHHHHhhcCCCCCCCCceEEEEeCCeeeEecCCcccccCCCccccccCCCchhhHHHhhCChHHHHHH
Q 016922 184 WYIMTSPFTDDATRKYFEGHKYFGLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMAT 263 (380)
Q Consensus 184 ~~IMTS~~t~e~t~~~f~~~~~FGl~~~~V~~f~Q~~~P~~~~~gki~l~~~~~i~~~P~GnGgi~~aL~~~g~l~~l~~ 263 (380)
||||||+.|++.|++||+.|+|||++++||+||+|+++||++.+|+++|+.+.+++++|+||||+|+|+.++ +.+|.+
T Consensus 157 w~ImtS~~T~e~T~~~f~~~~~FGl~~~qv~~f~Q~~l~c~~~~gk~~le~k~~~a~ap~gngg~y~ai~~~--l~dm~~ 234 (477)
T KOG2388|consen 157 WYIMTSAFTHEATLEYFESHKYFGLKPEQVTFFQQGKLPCLDLDGKFILEQKNSLAAAPDGNGGLYRAIKDQ--LEDMAA 234 (477)
T ss_pred EEEecCCCccHHhHhHHhhcCCCCCChhHeeeeecccccccccCCceeccCccchhcCCCCCcHHHHHHHhh--hhHHHh
Confidence 999999999999999999999999999999999999999999999999999999999999999999999998 999999
Q ss_pred CCCeEEEEEcCCCcccccCCHHHHHHHHHhCCceEEEEeecCCCCcccceEEEEcCCCCeEEEEecccChhhhhhhccCC
Q 016922 264 RGIKYIDCYGVDNALVRVADPTFLGYFIDKGVSAGAKVVRKAYPQEKVGVFVRRGKGGPLTVVEYSELDPSLASAINQET 343 (380)
Q Consensus 264 ~Gi~yi~v~~vDN~L~~~~Dp~~lG~~~~~~~d~~~kvv~k~~p~e~vGvl~~~~~~g~~~vvEYsel~~~~~~~~~~~~ 343 (380)
+|+.|+|||||||+|++++||+||||++.+++|+++|+|+|.+|.|.||++|+.+. |.++||||||++.++++...+.+
T Consensus 235 rgi~~~hiy~VdnvL~k~aDP~fiG~~it~~~d~~~k~V~k~~p~E~vG~~~~~~~-G~~~vvEYsEi~~~~a~~~~~d~ 313 (477)
T KOG2388|consen 235 RGIFYDHIYCVDNVLLKVADPVFIGFSITKEADVAAKVVPKINPGEVVGIVALKGQ-GTPLVVEYSELDAELAKAKAPDG 313 (477)
T ss_pred hcccEEEEEEecceeeEecccceeeEEeechhhHhhhhccccCCCCceEEEEecCC-CceeEEEecccCHHHHhhccccc
Confidence 99999999999999999999999999999999999999999999999999999743 89999999999999988766555
Q ss_pred CcceeccccccchhccHHHHHHHHhccccCCCCC
Q 016922 344 GRLRFCWSNVCLHMFTLDFLNQVANGLEKDSVLL 377 (380)
Q Consensus 344 g~l~f~~gNi~~~~f~l~fL~~~~~~~~~~~~~~ 377 (380)
|++.|++||||||+|+++||+++.+.+++.+++|
T Consensus 314 g~l~~~agnI~nh~ft~dFLkk~~~~~~~~lp~H 347 (477)
T KOG2388|consen 314 GRLLFNAGNICNHFFTLDFLKKVTRASVPLLPYH 347 (477)
T ss_pred CccccCCccHHHHHHhhHHHHHhhhcccccchhh
Confidence 9999999999999999999999999998877665
No 4
>PLN02830 UDP-sugar pyrophosphorylase
Probab=100.00 E-value=4.2e-78 Score=631.34 Aligned_cols=336 Identities=32% Similarity=0.466 Sum_probs=297.6
Q ss_pred CCCHHHHHHHHHHCCCchhccccccC--CHHHHHHHHHHHhcCChHH---HHHH---HHHHHh-c-C-CCCCCcccc-CC
Q 016922 22 SPPPQALLERLKDYGQEDAFALWDEL--SPDERDHLVKDIESLDLPR---VDRI---IRCSLR-S-Q-GLPVAAIEP-VP 89 (380)
Q Consensus 22 ~~~~~~l~~~l~~~gQ~Hll~~~~~l--~~~ek~~L~~ql~~id~~~---~~~~---~~~~~~-~-~-~~~~~~~~p-~p 89 (380)
+.+.++|+++|.++||+|||+||+++ +++||++|++||..+|..+ +..+ +.+.+. + . ..+++.++| +|
T Consensus 24 ~~~~~~l~~~L~~~gQ~HL~~~w~~l~~~~~e~~~L~~qL~~ld~~y~g~l~~~~~~~~~~l~~s~~~~~~~~~i~P~vp 103 (615)
T PLN02830 24 SPDQRALVRRLLELGQSHLFEHWPEPGVDDDDKRRLLEQVARLDESYPGGLAAYVSNAKELLADSKEGVNPFEGWTPSVP 103 (615)
T ss_pred ChhHHHHHHHHHHcCcHHHHhhhhccCCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHhhcccCCCchhhcccCCC
Confidence 78888999999999999999999998 8999999999999999884 2222 222333 2 2 357888999 67
Q ss_pred CCCccccccCChHHHHHHHHHhhhhhcCCCEEEEEecCCCccccCCCCCCccccccCCCCCccHHHHHHHHHHHHHHHHh
Q 016922 90 ERSVSTVEERTMDERERWWKMGLKAISDGKLAVLLLSGGQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQ 169 (380)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~G~~~i~~gkvavvlLAGG~GTRLg~~~PKg~~~i~l~s~ksllq~~~e~i~~l~~la~~ 169 (380)
.+...++++ .+..+|++.|+++| ||||||+||||||||||+++||+++|+++++++||||++++||+++|++|.+
T Consensus 104 ~~~~~~~~~---~~~~~~~~~Gl~~l--~kvavllLaGGlGTRLG~~~pK~~lpv~~~~gkt~lql~~e~I~~lq~la~~ 178 (615)
T PLN02830 104 EGEVLEYGS---EEFVELEEAGLREA--GNAAFVLVAGGLGERLGYSGIKVALPTETATGTCYLQLYIESILALQERAKK 178 (615)
T ss_pred ccccccccc---hhhhHHHHHHHHHh--CcEEEEEecCCcccccCCCCCCcceecccCCCCcHHHHHHHHHHHHHHHHHH
Confidence 766666654 34567899999999 6999999999999999999999999999999999999999999999999876
Q ss_pred hhcCCCCCCCCceeEEEEcCCCchHHHHHHHhhcCCCCCCCCceEEEEeCCeeeEec-CCcccccC--CCccccccCCCc
Q 016922 170 VTSEGGGSGSAAIHWYIMTSPFTDDATRKYFEGHKYFGLESDQVTFFQQGTIPCVSK-DGRFIMET--PYKVAKAPDGNG 246 (380)
Q Consensus 170 ~~~~~~~~~~~~ip~~IMTS~~t~e~t~~~f~~~~~FGl~~~~V~~f~Q~~~P~~~~-~gki~l~~--~~~i~~~P~GnG 246 (380)
..+ ++++.||||||||+.||++|++||++|+|||++++||+||+|+++||++. +|++++++ +++++|+|+|||
T Consensus 179 ~~~----~~~~~IPl~IMTS~~T~~~T~~~~~~n~~FGl~~~~v~~F~Q~~~P~~~~~~g~~~l~~~d~~~i~~~P~GhG 254 (615)
T PLN02830 179 RKA----KKGRKIPLVIMTSDDTHARTLKLLERNDYFGMDPDQVTLLKQEKVACLMDNDARLALDPNDPYKIQTKPHGHG 254 (615)
T ss_pred hcc----cCCCCceEEEECCcchhHHHHHHHHHCCccCCCccceEEEEcCcceeEecCCCcccccCCCCCccccCCCCcc
Confidence 543 25788999999999999999999999999999999999999999999985 59999988 889999999999
Q ss_pred hhhHHHhhCChHHHHHHCCCeEEEEEcCCCcccccCCHHHHHHHHHhCCceEEEEeecCCCCcccceEEEE-cCCCC--e
Q 016922 247 GVYSALKSSKLLEDMATRGIKYIDCYGVDNALVRVADPTFLGYFIDKGVSAGAKVVRKAYPQEKVGVFVRR-GKGGP--L 323 (380)
Q Consensus 247 gi~~aL~~~g~l~~l~~~Gi~yi~v~~vDN~L~~~~Dp~~lG~~~~~~~d~~~kvv~k~~p~e~vGvl~~~-~~~g~--~ 323 (380)
|+|.+|+++|++++|.++|++|++|+||||+|++++||.|||||+.++++|+++||+| .|.|++|++|+. +.||+ +
T Consensus 255 di~~aL~~sGlLd~l~~~G~~yi~v~~vDN~L~~~Adp~flG~~~~~~~d~~~kvv~K-~~~E~vGvi~~~~~~dG~~l~ 333 (615)
T PLN02830 255 DVHALLYSSGLLDKWLSAGKKWVVFFQDTNGLVFKAIPAALGVSATKGFDMNSLAVPR-KAKEAIGAIAKLTHKDGREMV 333 (615)
T ss_pred HHHHHHHHCCCHHHHHHcCCEEEEEEeccchhhhcccHHHhHHHHhcCCceEEEEEEC-CCCcccceEEEEecCCCCeee
Confidence 9999999999999999999999999999999999999999999999999999999999 688999999985 23676 6
Q ss_pred EEEEecccChhhhhhhcc------CCCcceeccccccchhccHHHHHHHHh
Q 016922 324 TVVEYSELDPSLASAINQ------ETGRLRFCWSNVCLHMFTLDFLNQVAN 368 (380)
Q Consensus 324 ~vvEYsel~~~~~~~~~~------~~g~l~f~~gNi~~~~f~l~fL~~~~~ 368 (380)
+||||+|++++++...++ .+|++.|+ ||||++|++++.++++++
T Consensus 334 ~vVEYse~~~ll~~a~~p~g~l~~~~~~s~FP-gNtN~L~v~L~a~~~~l~ 383 (615)
T PLN02830 334 INVEYNQLDPLLRATGHPDGDVNDETGYSPFP-GNINQLILKLGPYVKELA 383 (615)
T ss_pred EEEeecccCHHHHhccCCCcccccccccccCC-CCceeeEeeHHHHHHHHH
Confidence 899999999987664332 35667776 999999999999999997
No 5
>cd04193 UDPGlcNAc_PPase UDPGlcNAc pyrophosphorylase catalayzes the synthesis of UDPGlcNAc. UDP-N-acetylglucosamine (UDPGlcNAc) pyrophosphorylase (UAP) (also named GlcNAc1P uridyltransferase), catalyzes the reversible conversion of UTP and GlcNAc1 to PPi and UDPGlcNAc. UDP-N-acetylglucosamine (UDPGlcNAc), the activated form of GlcNAc, is a key precursor of N- and O-linked glycosylations. It is essential for the synthesis of chitin (a major component of the fungal cell wall) and of the glycosylphosphatidylinositol (GPI) linker which anchors a variety of cell surface proteins to the plasma membrane. In bacteria, UDPGlcNAc represents an essential precursor for both peptidoglycan and lipopolysaccharide biosynthesis. Human UAP has two isoforms, resulting from alternative splicing of a single gene and differing by the presence or absence of 17 amino acids. UDPGlcNAc pyrophosphorylase shares significant sequence and structure conservation with UDPglucose pyrophosphorylase.
Probab=100.00 E-value=8.3e-72 Score=549.06 Aligned_cols=264 Identities=54% Similarity=0.897 Sum_probs=249.2
Q ss_pred HHHHHhhhhhcCCCEEEEEecCCCccccCCCCCCccccccCCCCCccHHHHHHHHHHHHHHHHhhhcCCCCCCCCceeEE
Q 016922 106 RWWKMGLKAISDGKLAVLLLSGGQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWY 185 (380)
Q Consensus 106 ~~~~~G~~~i~~gkvavvlLAGG~GTRLg~~~PKg~~~i~l~s~ksllq~~~e~i~~l~~la~~~~~~~~~~~~~~ip~~ 185 (380)
+|+++|+++|++|+||+|+||||+|||||++.||+|+||+++++|||||+++++|++++.++.+..+ ..+.|||+
T Consensus 2 ~~~~~G~~~i~~~~va~viLaGG~GTRLg~~~PK~l~pv~~~~~k~ll~~~~e~l~~l~~~~~~~~~-----~~~~ip~~ 76 (323)
T cd04193 2 EWEEAGLKAIAEGKVAVLLLAGGQGTRLGFDGPKGMFPVGLPSKKSLFQLQAERILKLQELAGEASG-----KKVPIPWY 76 (323)
T ss_pred hHHHHhHHHHhcCCEEEEEECCCcccccCCCCCeEEEEecCCCCCcHHHHHHHHHHHHHHHHhhccC-----CCCCceEE
Confidence 5889999999999999999999999999999999999999999999999999999999998875442 45779999
Q ss_pred EEcCCCchHHHHHHHhhcCCCCCCCCceEEEEeCCeeeEecCCcccccCCCccccccCCCchhhHHHhhCChHHHHHHCC
Q 016922 186 IMTSPFTDDATRKYFEGHKYFGLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRG 265 (380)
Q Consensus 186 IMTS~~t~e~t~~~f~~~~~FGl~~~~V~~f~Q~~~P~~~~~gki~l~~~~~i~~~P~GnGgi~~aL~~~g~l~~l~~~G 265 (380)
||||++||+.|++||++++|||+++++|+||.|+++||++.+|+++++++++++++|+||||+|.+|+++|++++|.++|
T Consensus 77 imtS~~t~~~t~~~~~~~~~fGl~~~~i~~f~Q~~~P~~~~~g~~~l~~~~~~~~~P~GhG~i~~aL~~sG~l~~l~~~G 156 (323)
T cd04193 77 IMTSEATHEETRKFFKENNYFGLDPEQVHFFQQGMLPCVDFDGKILLEEKGKIAMAPNGNGGLYKALQTAGILEDMKKRG 156 (323)
T ss_pred EEcChhHhHHHHHHHHhCCcCCCCCceEEEEecCceeeEcCCCccccCCCCccccCCCCchHHHHHHHHCChHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEEcCCCcccccCCHHHHHHHHHhCCceEEEEeecCCCCcccceEEEEcCCCCeEEEEecccChhhhhhhccCCCc
Q 016922 266 IKYIDCYGVDNALVRVADPTFLGYFIDKGVSAGAKVVRKAYPQEKVGVFVRRGKGGPLTVVEYSELDPSLASAINQETGR 345 (380)
Q Consensus 266 i~yi~v~~vDN~L~~~~Dp~~lG~~~~~~~d~~~kvv~k~~p~e~vGvl~~~~~~g~~~vvEYsel~~~~~~~~~~~~g~ 345 (380)
++|++|+|+||+|++++||.||||++++++|+++||++|+.|+|++|++|+. ||+++|+||+|+|++.++.++ ++|.
T Consensus 157 ~~yi~v~~vDN~L~~~~Dp~~lG~~~~~~~~~~~kvv~k~~~~ekvG~l~~~--~g~~~vvEysel~~~~~~~~~-~~g~ 233 (323)
T cd04193 157 IKYIHVYSVDNILVKVADPVFIGFCISKGADVGAKVVRKRYPTEKVGVVVLV--DGKPQVVEYSEISDELAEKRD-ADGE 233 (323)
T ss_pred CEEEEEEecCcccccccCHHHhHHHHHcCCceEEEEEECCCCCCceeEEEEE--CCeEEEEEeecCCHHHHhccC-cCCc
Confidence 9999999999999999999999999999999999999999999999999997 799999999999999988764 5899
Q ss_pred ceeccccccchhccHHHHHHHHhccccCCCCC
Q 016922 346 LRFCWSNVCLHMFTLDFLNQVANGLEKDSVLL 377 (380)
Q Consensus 346 l~f~~gNi~~~~f~l~fL~~~~~~~~~~~~~~ 377 (380)
+.|++||||+|+|+++||+++++.....++++
T Consensus 234 l~f~~~ni~~~~fsl~fl~~~~~~~~~~l~~h 265 (323)
T cd04193 234 LQYNAGNIANHFFSLDFLEKAAEMEEPSLPYH 265 (323)
T ss_pred EecccchHhhheeCHHHHHHHHhhccccCCce
Confidence 99999999999999999999987654445544
No 6
>cd06424 UGGPase UGGPase catalyzes the synthesis of UDP-Glucose/UDP-Galactose. UGGPase: UDP-Galactose/Glucose Pyrophosphorylase catalyzes the reversible production of UDP-Glucose/UDP-Galactose and pyrophosphate (PPi) from Glucose-1-phosphate/Galactose-1-phosphate and UTP. Its dual substrate specificity distinguishes it from the single substrate enzyme UDP-glucose pyrophosphorylase. It may play a key role in the galactose metabolism in raffinose oligosaccharide (RFO) metabolizing plants. RFO raffinose is a major photoassimilate and is a galactosylderivative of sucrose (Suc) containing a galactose (Gal) moiety. Upon arriving at the sink tissue, the Gal moieties of the RFOs are initially removed by alpha-galactosidase and then are phosphorylated to Gal-1-P. Gal-1-P is converted to UDP-Gal. The UDP-Gal is further metabolized to UDP-Glc via an epimerase reaction. The UDP-Glc can be directly utilized in cell wall metabolism or in Suc synthesis. However, for the Suc synthesis UDP-Glc must be f
Probab=100.00 E-value=2.8e-70 Score=533.12 Aligned_cols=242 Identities=29% Similarity=0.411 Sum_probs=223.0
Q ss_pred EEEEEecCCCccccCCCCCCccccccCCCCCccHHHHHHHHHHHHHHHHhhhcCCCCCCCCceeEEEEcCCCchHHHHHH
Q 016922 120 LAVLLLSGGQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRKY 199 (380)
Q Consensus 120 vavvlLAGG~GTRLg~~~PKg~~~i~l~s~ksllq~~~e~i~~l~~la~~~~~~~~~~~~~~ip~~IMTS~~t~e~t~~~ 199 (380)
+|+|+||||||||||+++||||+||++++++||||++++||+++|++|.+ .+++.||||||||+.||++|++|
T Consensus 1 ~a~vllaGG~GTRLG~~~pKg~~~v~~~~~~s~f~l~~~~i~~l~~~~~~-------~~~~~IPl~IMTS~~Th~~T~~~ 73 (315)
T cd06424 1 AVFVLVAGGLGERLGYSGIKIGLPVELTTNTTYLQYYLNYIRAFQEASKK-------GEKMEIPFVIMTSDDTHSKTLKL 73 (315)
T ss_pred CEEEEecCCCccccCCCCCceeeeccCCCCCcHHHHHHHHHHHHHHHhhc-------cCCCceeEEEECCCchhHHHHHH
Confidence 58999999999999999999999999999999999999999999999864 15678999999999999999999
Q ss_pred HhhcCCCCCCCCceEEEEeCCeeeEe-cCCcc--cccCCCccccccCCCchhhHHHhhCChHHHHHHCCCeEEEEEcCCC
Q 016922 200 FEGHKYFGLESDQVTFFQQGTIPCVS-KDGRF--IMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGVDN 276 (380)
Q Consensus 200 f~~~~~FGl~~~~V~~f~Q~~~P~~~-~~gki--~l~~~~~i~~~P~GnGgi~~aL~~~g~l~~l~~~Gi~yi~v~~vDN 276 (380)
|++|+|||+++++|+||+|+++||++ .+|++ .++++++++|+|+||||+|+||+++|++++|.++|++|++|+||||
T Consensus 74 fe~n~yFGl~~~~V~fF~Q~~~P~l~~~~g~l~~~l~~~~~i~~~P~GhGdiy~aL~~sGlLd~l~~~Gikyi~v~~vdN 153 (315)
T cd06424 74 LEENNYFGLEKDQVHILKQEKVFCLIDNDAHLALDPDNTYSILTKPHGHGDVHTLLYNSGLLKKWIEAGYKWLVFFQDTN 153 (315)
T ss_pred HHHCCccCCCcccEEEEecCceEEEecCCCCcccccCCCCccccCCCCchHHHHHHHHCCcHHHHHHCCCEEEEEEecch
Confidence 99999999999999999999999997 89999 5788999999999999999999999999999999999999999999
Q ss_pred cccccCCHHHHHHHHHhCCceEEEEeecCCCCcccceEEEE-cCCCCeEE--EEecccChhhhhhhcc------CCCcce
Q 016922 277 ALVRVADPTFLGYFIDKGVSAGAKVVRKAYPQEKVGVFVRR-GKGGPLTV--VEYSELDPSLASAINQ------ETGRLR 347 (380)
Q Consensus 277 ~L~~~~Dp~~lG~~~~~~~d~~~kvv~k~~p~e~vGvl~~~-~~~g~~~v--vEYsel~~~~~~~~~~------~~g~l~ 347 (380)
+|++++||.|+|+++.+++||++|||+ +.|.|+||++|+. +.||+++| ||||||++++++...+ .+|.+.
T Consensus 154 ~L~~~adP~fiG~~~~~~~d~~~k~v~-~~~~E~vG~~~~~~~~~g~~~v~nvEYsel~~~~~~~~~~~g~~~~~~~~s~ 232 (315)
T cd06424 154 ALAFKAIPAVLGVSATKSLDMNSLTVP-RKPKEAIGALCKLTKNNGKSMTINVEYNQLDPLLRASGKDDGDVDDKTGFSP 232 (315)
T ss_pred hhhhccChhhEEEEecCCCceEeEEEe-CCCCCceeeEEEEecCCCceEEEEEEeecCCHHHHhcCCCCCCccccccccc
Confidence 999999999999999999999999998 5789999999985 24689988 9999999998774322 345666
Q ss_pred eccccccchhccHHHHHHHHhcc
Q 016922 348 FCWSNVCLHMFTLDFLNQVANGL 370 (380)
Q Consensus 348 f~~gNi~~~~f~l~fL~~~~~~~ 370 (380)
| +||||+|+|+++|++++++..
T Consensus 233 f-~gNi~~~~f~l~~~~~~l~~~ 254 (315)
T cd06424 233 F-PGNINQLVFSLGPYMDELEKT 254 (315)
T ss_pred C-CCeeeeEEEeHHHHHHHHhhc
Confidence 6 699999999999999998743
No 7
>cd00897 UGPase_euk Eukaryotic UGPase catalyses the synthesis of UDP-Glucose. UGPase (UDP-Glucose Pyrophosphorylase) catalyzes the reversible production of UDP-Glucose and pyrophosphate (PPi) from Glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids, glycoproteins, and proteoglycans. UGPase is found in both prokaryotes and eukaryotes. Interestingly, while the prokaryotic and eukaryotic forms of UGPase catalyze the same reaction, they share low sequence similarity. This family consists of mainly eukaryotic UTP-glucose-1-phosphate uridylyltransferases.
Probab=100.00 E-value=3.9e-67 Score=509.22 Aligned_cols=238 Identities=23% Similarity=0.335 Sum_probs=220.3
Q ss_pred CCEEEEEecCCCccccCCCCCCccccccCCCCCccHHHHHHHHHHHHHHHHhhhcCCCCCCCCceeEEEEcCCCchHHHH
Q 016922 118 GKLAVLLLSGGQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATR 197 (380)
Q Consensus 118 gkvavvlLAGG~GTRLg~~~PKg~~~i~l~s~ksllq~~~e~i~~l~~la~~~~~~~~~~~~~~ip~~IMTS~~t~e~t~ 197 (380)
+|||+|+||||||||||+++||||+|| ++++||||++++||+++++. +++.||||||||+.||++|+
T Consensus 2 ~kvavl~LaGG~GTRLG~~~pKg~~~v--~~~~s~l~l~~~~i~~l~~~-----------~~~~iPl~iMtS~~T~~~T~ 68 (300)
T cd00897 2 NKLVVLKLNGGLGTSMGCTGPKSLIEV--RDGKTFLDLTVQQIEHLNKT-----------YGVDVPLVLMNSFNTDEDTK 68 (300)
T ss_pred CcEEEEEecCCcccccCCCCCceeeec--CCCCcHHHHHHHHHHHHHHH-----------cCCCceEEEECCCcchHHHH
Confidence 589999999999999999999999988 69999999999999998875 46789999999999999999
Q ss_pred HHHhhcCCCCCCCCceEEEEeCCeeeEecCCccccc---CCCccccccCCCchhhHHHhhCChHHHHHHCCCeEEEEEcC
Q 016922 198 KYFEGHKYFGLESDQVTFFQQGTIPCVSKDGRFIME---TPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGV 274 (380)
Q Consensus 198 ~~f~~~~~FGl~~~~V~~f~Q~~~P~~~~~gki~l~---~~~~i~~~P~GnGgi~~aL~~~g~l~~l~~~Gi~yi~v~~v 274 (380)
+||++|++ ++++|++|+|+++||++.+|+++++ ++++++|+|+||||+|.+|+++|++++|.++|++|++|+||
T Consensus 69 ~~l~~~~~---~~~~v~~F~Q~~~P~~~~~~~~~l~~~~~~~~~~~~P~GhG~i~~aL~~sG~L~~l~~~G~~yi~v~nv 145 (300)
T cd00897 69 KILKKYAG---VNVDIHTFNQSRYPRISKETLLPVPSWADSPDEEWYPPGHGDIFESLYNSGLLDTLLAQGKEYLFVSNI 145 (300)
T ss_pred HHHHHcCC---CccCeEEEecCCcccCccccCccccccCCCcceeeccCCCchHHHHHHHCCcHHHHHhcCCEEEEEEec
Confidence 99999775 7889999999999999999999997 78899999999999999999999999999999999999999
Q ss_pred CCcccccCCHHHHHHHHHhCCceEEEEeecCCCCcccceEEEEcCCCCeEEEEecccChhhhhhhccCCCcceecccccc
Q 016922 275 DNALVRVADPTFLGYFIDKGVSAGAKVVRKAYPQEKVGVFVRRGKGGPLTVVEYSELDPSLASAINQETGRLRFCWSNVC 354 (380)
Q Consensus 275 DN~L~~~~Dp~~lG~~~~~~~d~~~kvv~k~~p~e~vGvl~~~~~~g~~~vvEYsel~~~~~~~~~~~~g~l~f~~gNi~ 354 (380)
|| |++++||.|+|||+.+++++++||++|+.|+|++|++|++ +|+++|+||+|+|++.+++++ |.+.|.++|||
T Consensus 146 DN-L~a~~Dp~~lg~~~~~~~~~~~evv~Kt~~dek~G~l~~~--~g~~~vvEyse~p~e~~~~~~---~~~~~~~~nt~ 219 (300)
T cd00897 146 DN-LGATVDLRILNHMVDNKAEYIMEVTDKTRADVKGGTLIQY--EGKLRLLEIAQVPKEHVDEFK---SIKKFKIFNTN 219 (300)
T ss_pred cc-ccccCCHHHHHHHHhcCCceEEEEeecCCCCCcccEEEEE--CCEEEEEEeccCCHHHHHhhc---CcccceEEEEe
Confidence 99 6899999999999999999999999999999999999997 799999999999999877554 55678889999
Q ss_pred chhccHHHHHHHHhccccCCCCC
Q 016922 355 LHMFTLDFLNQVANGLEKDSVLL 377 (380)
Q Consensus 355 ~~~f~l~fL~~~~~~~~~~~~~~ 377 (380)
||||+++||+++++..+..++++
T Consensus 220 n~~~~l~~L~~~~~~~~~~lp~h 242 (300)
T cd00897 220 NLWVNLKAVKRVVEENALDLEII 242 (300)
T ss_pred EEEEEHHHHHHHHHhccCCCCee
Confidence 99999999999987554445544
No 8
>PF01704 UDPGP: UTP--glucose-1-phosphate uridylyltransferase; InterPro: IPR002618 This family consists of UTP--glucose-1-phosphate uridylyltransferases (2.7.7.9 from EC). Also known as UDP-glucose pyrophosphorylase (UDPGP) and Glucose-1-phosphate uridylyltransferase. UTP--glucose-1-phosphate uridylyltransferase catalyses the interconversion of MgUTP + glucose-1-phosphate and UDP-glucose + MgPPi []. UDP-glucose is an important intermediate in mammalian carbohydrate interconversion involved in various metabolic roles depending on tissue type []. In Dictyostelium discoideum (Slime mold), mutants in this enzyme abort the development cycle []. Also within this family is UDP-N-acetylglucosamine pyrophosphorylase (Q16222 from SWISSPROT) [] and two hypothetical proteins from Borrelia burgdorferi, the Lyme disease spirochaete (O51893 from SWISSPROT and O51036 from SWISSPROT).; GO: 0016779 nucleotidyltransferase activity, 0008152 metabolic process; PDB: 2OEG_A 2OEF_A 2YQS_A 2YQJ_A 2YQH_B 2YQC_A 3OH4_A 3OGZ_A 3OH3_A 3OH1_A ....
Probab=100.00 E-value=1.8e-65 Score=518.48 Aligned_cols=285 Identities=40% Similarity=0.626 Sum_probs=237.0
Q ss_pred hHHHHHHHHHHHhc-C--CCCCCccccCCCCCccccccCChHHHHH--HHHHhhhhhcCCCEEEEEecCCCccccCCCCC
Q 016922 64 LPRVDRIIRCSLRS-Q--GLPVAAIEPVPERSVSTVEERTMDERER--WWKMGLKAISDGKLAVLLLSGGQGTRLGSSDP 138 (380)
Q Consensus 64 ~~~~~~~~~~~~~~-~--~~~~~~~~p~p~~~~~~~~~~~~~~~~~--~~~~G~~~i~~gkvavvlLAGG~GTRLg~~~P 138 (380)
.+.+.++|++++.+ . ...++.+.|++++.+..+++ ... | +.|+.+++.||||||+||||||||||+++|
T Consensus 2 ~~~f~~l~~~yl~~~~~~~~~~~~i~~~~~~~~~~~~~-----l~~~~~-~~~~~~~~~~kvavl~LaGGlGTrlG~~~p 75 (420)
T PF01704_consen 2 LDSFFSLFRRYLSESKSHQIDWDKIMPPPPEEVVDYES-----LKEYEW-DEGLEAIALGKVAVLKLAGGLGTRLGCSGP 75 (420)
T ss_dssp HHHHHHHHHHHHHCCCCCS--GGGEEE-GTGCEEEHHH-----HHHSCH-HHHHHHHHTTCEEEEEEEESBSGCCTESSB
T ss_pred hHHHHHHHHHHHHhcccCCcccccCCCCChhhcCChhH-----hccccc-ccchhHHhhCCEEEEEEcCcccCccCCCCC
Confidence 34577888888875 2 35678888876656554443 333 3 789999999999999999999999999999
Q ss_pred CccccccCCCCCccHHHHHHHHHHHHHHHHhhhcCCCCCCCCceeEEEEcCCCchHHHHHHHhhcCCCCCCCCceEEEEe
Q 016922 139 KGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRKYFEGHKYFGLESDQVTFFQQ 218 (380)
Q Consensus 139 Kg~~~i~l~s~ksllq~~~e~i~~l~~la~~~~~~~~~~~~~~ip~~IMTS~~t~e~t~~~f~~~~~FGl~~~~V~~f~Q 218 (380)
|||+|| .+++||||+++++|.+++.. +++.|||+||||+.||++|++||++ |||++.+ |++|+|
T Consensus 76 K~~~~v--~~~~t~ldl~~~qi~~l~~~-----------~~~~iPl~iMtS~~T~~~T~~~l~k--yfg~~~~-v~~F~Q 139 (420)
T PF01704_consen 76 KGLIPV--REGKTFLDLIVEQIEALNKK-----------YGVDIPLYIMTSFNTHEDTRKFLEK--YFGLDVD-VFFFKQ 139 (420)
T ss_dssp GGGSEE--ETTEEHHHHHHHHHHHHHHH-----------HTTT-EEEEEEETTTHHHHHHHHHH--GCGSSCC-EEEEEE
T ss_pred Ccceec--CCcccHHHHHHHHHHHHhcc-----------ccccceEEEecCcccHHHHHHHHHH--hcCCCcc-eEEEee
Confidence 999887 78999999999999988765 3567999999999999999999999 9999987 999999
Q ss_pred CCeeeEecCCcccccCCCc-----cccccCCCchhhHHHhhCChHHHHHHCCCeEEEEEcCCCcccccCCHHHHHHHHHh
Q 016922 219 GTIPCVSKDGRFIMETPYK-----VAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGVDNALVRVADPTFLGYFIDK 293 (380)
Q Consensus 219 ~~~P~~~~~gki~l~~~~~-----i~~~P~GnGgi~~aL~~~g~l~~l~~~Gi~yi~v~~vDN~L~~~~Dp~~lG~~~~~ 293 (380)
+++||++.+|+++++++.+ .+|+|+||||+|.+|++||++++|.++|++|+||+|+|| |++++||.|+||++++
T Consensus 140 ~~~P~i~~d~~~~l~~~~~~~~~~~~w~P~GhGdi~~aL~~sG~Ld~l~~~G~eyifv~nvDN-L~a~~Dp~~lG~~~~~ 218 (420)
T PF01704_consen 140 SKLPAIDADGKLPLESKPKDSIAEDEWYPPGHGDIYRALYNSGLLDKLLARGIEYIFVSNVDN-LGAVVDPVFLGYMIEK 218 (420)
T ss_dssp -EEEEEETTTTCBEEETTEESEEEGGEEE-TGGGHHHHHHHTTHHHHHHHTT--EEEEEETTB-TT-TT-HHHHHHHHHT
T ss_pred cCcceEeCCCccccccccccccchhhccCCCCcceehhhhccChHHHHHHcCCeEEEEEecCC-cccccCHHHHHHHHhc
Confidence 9999999999999987652 357899999999999999999999999999999999999 8999999999999999
Q ss_pred CCceEEEEeecCCCCcccceEEEEcCCCCeEEEEecccChhhhhhhccCCCcceeccccccchhccHHHHHHHHhccccC
Q 016922 294 GVSAGAKVVRKAYPQEKVGVFVRRGKGGPLTVVEYSELDPSLASAINQETGRLRFCWSNVCLHMFTLDFLNQVANGLEKD 373 (380)
Q Consensus 294 ~~d~~~kvv~k~~p~e~vGvl~~~~~~g~~~vvEYsel~~~~~~~~~~~~g~l~f~~gNi~~~~f~l~fL~~~~~~~~~~ 373 (380)
++++++||++|+.|+|++|++|+. +|+++|+||+|+|++..++.++.++.+.|+++|| ||+++||+++++..+..
T Consensus 219 ~~~~~~evv~Kt~~dek~Gvl~~~--~G~~~vvEysqip~~~~~~~~~~~~~~~FntnNi---~~~l~~l~~~~~~~~~~ 293 (420)
T PF01704_consen 219 NADFGMEVVPKTSPDEKGGVLCRY--DGKLQVVEYSQIPKEHMAEFKDIKGFLLFNTNNI---WFSLDFLKRLLERDELQ 293 (420)
T ss_dssp T-SEEEEEEE-CSTTTSSEEEEEE--TTEEEEEEGGGS-HHGHHHHTSTTTSBEEEEEEE---EEEHHHHHHHHHTTTCC
T ss_pred cchhheeeeecCCCCCceeEEEEe--CCccEEEEeccCCHHHHHhhhccccceEEEecee---eEEHHHHHHHHHhcccc
Confidence 999999999999999999999997 7999999999999997666665677788876666 59999999999865544
Q ss_pred CCC
Q 016922 374 SVL 376 (380)
Q Consensus 374 ~~~ 376 (380)
+++
T Consensus 294 Lp~ 296 (420)
T PF01704_consen 294 LPI 296 (420)
T ss_dssp S-E
T ss_pred Ccc
Confidence 443
No 9
>PLN02474 UTP--glucose-1-phosphate uridylyltransferase
Probab=100.00 E-value=2.8e-64 Score=512.14 Aligned_cols=278 Identities=20% Similarity=0.255 Sum_probs=242.4
Q ss_pred HHHHHHHHHHHhcC--CCCCCccccCCCCCccccccCChHHHHHHHHHhhhhhcCCCEEEEEecCCCccccCCCCCCccc
Q 016922 65 PRVDRIIRCSLRSQ--GLPVAAIEPVPERSVSTVEERTMDERERWWKMGLKAISDGKLAVLLLSGGQGTRLGSSDPKGCV 142 (380)
Q Consensus 65 ~~~~~~~~~~~~~~--~~~~~~~~p~p~~~~~~~~~~~~~~~~~~~~~G~~~i~~gkvavvlLAGG~GTRLg~~~PKg~~ 142 (380)
+.|.++|++++..+ ..+|+.|+|++++.+..+++....... .....++| +|+|||+||||||||||+++||||+
T Consensus 27 ~~f~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~l~~~~~~--~~~~~~~L--~k~avlkLnGGlGTrmG~~~PKs~i 102 (469)
T PLN02474 27 SGFISLVSRYLSGEAQHIEWSKIQTPTDEVVVPYDKLAPVPED--PEETKKLL--DKLVVLKLNGGLGTTMGCTGPKSVI 102 (469)
T ss_pred HHHHHHHHHHHhCCCCeecHHHccCCchhhCcChhhccccccc--hhHHHHHH--hcEEEEEecCCcccccCCCCCceeE
Confidence 34666777776654 257888999887766666554321100 11234467 5999999999999999999999998
Q ss_pred cccCCCCCccHHHHHHHHHHHHHHHHhhhcCCCCCCCCceeEEEEcCCCchHHHHHHHhhcCCCCCCCCceEEEEeCCee
Q 016922 143 NIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRKYFEGHKYFGLESDQVTFFQQGTIP 222 (380)
Q Consensus 143 ~i~l~s~ksllq~~~e~i~~l~~la~~~~~~~~~~~~~~ip~~IMTS~~t~e~t~~~f~~~~~FGl~~~~V~~f~Q~~~P 222 (380)
+ +++++||||++++||+++++. +++.|||+||||+.||++|++||++|++|+ .+|++|+|+++|
T Consensus 103 ~--v~~~~sfldl~~~qi~~l~~~-----------~g~~vPl~iMtS~~T~~~T~~~l~k~~~~~---~~i~~F~Q~~~P 166 (469)
T PLN02474 103 E--VRNGLTFLDLIVIQIENLNKK-----------YGCNVPLLLMNSFNTHDDTQKIVEKYTNSN---IEIHTFNQSQYP 166 (469)
T ss_pred E--cCCCCcHHHHHHHHHHHHHHH-----------cCCCceEEEECCCchhHHHHHHHHHcCCCc---cceEEEecCcee
Confidence 7 579999999999999998765 467899999999999999999999999874 479999999999
Q ss_pred eEecCCcccccCCC---ccccccCCCchhhHHHhhCChHHHHHHCCCeEEEEEcCCCcccccCCHHHHHHHHHhCCceEE
Q 016922 223 CVSKDGRFIMETPY---KVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGVDNALVRVADPTFLGYFIDKGVSAGA 299 (380)
Q Consensus 223 ~~~~~gki~l~~~~---~i~~~P~GnGgi~~aL~~~g~l~~l~~~Gi~yi~v~~vDN~L~~~~Dp~~lG~~~~~~~d~~~ 299 (380)
|++.+|+++++.+. ..+|+|+||||+|.+|++||+|++|.++|++|++|+|+|| |++++||.|+||++.+++++++
T Consensus 167 ~l~~~~~~p~~~~~~~~~~~~~P~GhGd~y~aL~~sG~Ld~l~~~G~eyifv~nvDN-Lga~vDp~~lg~~~~~~~e~~~ 245 (469)
T PLN02474 167 RVVADDFVPWPSKGKTDKDGWYPPGHGDVFPSLMNSGKLDALLSQGKEYVFIANSDN-LGAIVDLKILNHLIQNKNEYCM 245 (469)
T ss_pred eEecCCCCcccccCCCCcceeeeCCCchHHHHHHhCChHHHHHhcCCEEEEEEecCc-cccccCHHHHHHHHhcCCceEE
Confidence 99999999998765 4559999999999999999999999999999999999999 5999999999999999999999
Q ss_pred EEeecCCCCcccceEEEEcCCCCeEEEEecccChhhhhhhccCCCcceeccccccchhccHHHHHHHHh
Q 016922 300 KVVRKAYPQEKVGVFVRRGKGGPLTVVEYSELDPSLASAINQETGRLRFCWSNVCLHMFTLDFLNQVAN 368 (380)
Q Consensus 300 kvv~k~~p~e~vGvl~~~~~~g~~~vvEYsel~~~~~~~~~~~~g~l~f~~gNi~~~~f~l~fL~~~~~ 368 (380)
+|++|+.+++|+|++|+. +|+++|+||+|+|++.+++++ |.++|+++|||||||+++||+++++
T Consensus 246 ev~~Kt~~d~kgG~l~~~--dgk~~lvEysqvp~e~~~~f~---~~~kf~~fNtnn~w~~L~~l~~~~~ 309 (469)
T PLN02474 246 EVTPKTLADVKGGTLISY--EGKVQLLEIAQVPDEHVNEFK---SIEKFKIFNTNNLWVNLKAIKRLVE 309 (469)
T ss_pred EEeecCCCCCCccEEEEE--CCEEEEEEEecCCHHHHHhhc---ccccceeeeeeeEEEEHHHHHHHhh
Confidence 999999999999999987 799999999999999887653 7889999999999999999999986
No 10
>COG4284 UDP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3.5e-63 Score=496.86 Aligned_cols=328 Identities=32% Similarity=0.474 Sum_probs=276.9
Q ss_pred CCHHHHHHHHHHCCCchhccccccCCHHHHHHHHHHHhcCChHHHHHHHHHHHhcC----CCCCCccccCCCCCcccccc
Q 016922 23 PPPQALLERLKDYGQEDAFALWDELSPDERDHLVKDIESLDLPRVDRIIRCSLRSQ----GLPVAAIEPVPERSVSTVEE 98 (380)
Q Consensus 23 ~~~~~l~~~l~~~gQ~Hll~~~~~l~~~ek~~L~~ql~~id~~~~~~~~~~~~~~~----~~~~~~~~p~p~~~~~~~~~ 98 (380)
.........+.+..|.|++..|..+++.+..+..+++..+| .+..++++++.+. ...++.++|+-++.+...++
T Consensus 13 ~~f~~~~~~l~~~~~~h~l~~l~~~s~~~~~~~~~~~~~~d--~~f~l~~~~ll~~s~~s~~~~~ki~~~~~d~~~~~~~ 90 (472)
T COG4284 13 FKFNSDAVSLAASQQEHLLDKLKQSSEKQALKSFEKLLLLD--IFFFLFSRYLLNTSKASTQEWDKIRPPNPDDVVDYEK 90 (472)
T ss_pred hhhhcchhhhhHHHHHHHHHHhhhhchHHHHhhhhhhhhhH--HHHHHHHHHHhhcCcccceeecccCCCChhhhccchh
Confidence 34556788899999999999999999955445555554444 2344455554422 23456666654444444443
Q ss_pred CChHHHHHHHHHhhhhhcCCCEEEEEecCCCccccCCCCCCccccccCCCCCccHHHHHHHHHHHHHHHHhhhcCCCCCC
Q 016922 99 RTMDERERWWKMGLKAISDGKLAVLLLSGGQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSG 178 (380)
Q Consensus 99 ~~~~~~~~~~~~G~~~i~~gkvavvlLAGG~GTRLg~~~PKg~~~i~l~s~ksllq~~~e~i~~l~~la~~~~~~~~~~~ 178 (380)
.. . +..|+..+..||+|+|+||||||||||+++|||+++|+ +||||||+++++|+.++.+ +
T Consensus 91 ~~---~---~~~~l~~~~~~klAvl~LaGGqGtrlG~~gPKgl~~V~--~gks~~dl~~~qIk~ln~~-----------~ 151 (472)
T COG4284 91 KI---L---EGWGLLKIKLGKLAVLKLAGGQGTRLGCDGPKGLFEVK--DGKSLFDLQAEQIKYLNRQ-----------Y 151 (472)
T ss_pred hc---c---chhhhhhhhcCceEEEEecCCcccccccCCCceeEEec--CCCcHHHHHHHHHHHHHHH-----------h
Confidence 21 1 12278888889999999999999999999999999996 7999999999999998887 4
Q ss_pred CCceeEEEEcCCCchHHHHHHHhhcCCCCCCCCceEEEEeCCee-eEecCCcccccCCCc-cccccCCCchhhHHHhhCC
Q 016922 179 SAAIHWYIMTSPFTDDATRKYFEGHKYFGLESDQVTFFQQGTIP-CVSKDGRFIMETPYK-VAKAPDGNGGVYSALKSSK 256 (380)
Q Consensus 179 ~~~ip~~IMTS~~t~e~t~~~f~~~~~FGl~~~~V~~f~Q~~~P-~~~~~gki~l~~~~~-i~~~P~GnGgi~~aL~~~g 256 (380)
+++|||||||| .|++.|..||+.++|||+++++|+||.|+.+| |++.+|+.++.+..+ ++|+|+||||+|.+|.+||
T Consensus 152 ~~~vP~~iMtS-~nt~~t~s~f~~~~Y~~~~k~~I~fF~Q~~~P~~~~~sg~~~~~~~~~~~~~~P~GnG~lf~aL~~SG 230 (472)
T COG4284 152 NVDVPLYIMTS-LNTEETDSYFKSNDYFGLDKEDIFFFVQSLFPRLLSDSGLPFLESDDSNLAWYPPGNGDLFKALKSSG 230 (472)
T ss_pred CCCCCEEEEec-CCcHHHHHHHhhhhhcCCCHHHeEEEecCCcceeecccCccccccCCcccccCCCCCccHHHHHHhcc
Confidence 57899999999 99999999999999999999999999999999 667889988877666 9999999999999999999
Q ss_pred hHHHHHHCCCeEEEEEcCCCcccccCCHHHHHHHHHhCCceEEEEeecCCCCcccceEEEEcCCCCeEEEEecccChhhh
Q 016922 257 LLEDMATRGIKYIDCYGVDNALVRVADPTFLGYFIDKGVSAGAKVVRKAYPQEKVGVFVRRGKGGPLTVVEYSELDPSLA 336 (380)
Q Consensus 257 ~l~~l~~~Gi~yi~v~~vDN~L~~~~Dp~~lG~~~~~~~d~~~kvv~k~~p~e~vGvl~~~~~~g~~~vvEYsel~~~~~ 336 (380)
++++|.++|++|++|+|||| |++++||.|+|+++..++++++|++.|+.|+|+||+++.. +|+++|+||+|+|++.+
T Consensus 231 ~le~l~~~G~e~lfV~nIDN-L~~~vD~~~lg~~~~~~~e~~~e~t~Kt~a~ekvG~Lv~~--~g~~rllEysev~~~~~ 307 (472)
T COG4284 231 ILEKLIAQGIEYLFVSNIDN-LGATVDLKFLGFMAETNYEYLMETTDKTKADEKVGILVTY--DGKLRLLEYSEVPNEHR 307 (472)
T ss_pred hHHHHHhcCceEEEEecccc-cccccCHHHHHHHHhcCcceeEEEeecccccccceEEEEe--CCceEEEEEecCChhHh
Confidence 99999999999999999999 8999999999999999999999999999999999999987 78999999999999988
Q ss_pred hhhccCCCcceecccc-ccchhccHHHHHHHHhccccCCCCCCC
Q 016922 337 SAINQETGRLRFCWSN-VCLHMFTLDFLNQVANGLEKDSVLLPS 379 (380)
Q Consensus 337 ~~~~~~~g~l~f~~gN-i~~~~f~l~fL~~~~~~~~~~~~~~~~ 379 (380)
++.. +.|.++|+.+| ||+|+++++||.+... -.++++|.
T Consensus 308 ~~~~-s~~~~~~~n~Nni~l~~~~~~~l~~~~~---l~Lpi~~a 347 (472)
T COG4284 308 EEFT-SDGKLKYFNTNNIWLHLFSVKFLKEAAY---LNLPIHKA 347 (472)
T ss_pred hhhc-cccceeeeccccceeehhHHHHHHhhhc---cCCcchhh
Confidence 8765 57889998887 9999999999998864 33555553
No 11
>cd04180 UGPase_euk_like Eukaryotic UGPase-like includes UDPase and UDPGlcNAc pyrophosphorylase enzymes. This family includes UDP-Glucose Pyrophosphorylase (UDPase) and UDPGlcNAc pyrophosphorylase enzymes. The two enzymes share significant sequence and structure similarity. UDP-Glucose Pyrophosphorylase catalyzes a reversible production of UDP-Glucose and pyrophosphate (PPi) from Glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids , glycoproteins , and proteoglycans . UDP-N-acetylglucosamine (UDPGlcNAc) pyrophosphorylase (UAP) (also named GlcNAc1P uridyltransferase), catalyzes the reversible conversion of UTP and GlcNAc1P from PPi and UDPGlcNAc, which is a key precursor of N- and O-linked glycosylations and is essential for the synthesis of chitin (a major component of the fungal cell wall) and of the glycosylphosphatidylinositol (GPI) linker anchoring a variety o
Probab=100.00 E-value=1.3e-60 Score=458.72 Aligned_cols=236 Identities=33% Similarity=0.468 Sum_probs=219.6
Q ss_pred EEEEEecCCCccccCCCCCCccccccCCCCCccHHHHHHHHHHHHHHHHhhhcCCCCCCCCceeEEEEcCCCchHHHHHH
Q 016922 120 LAVLLLSGGQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRKY 199 (380)
Q Consensus 120 vavvlLAGG~GTRLg~~~PKg~~~i~l~s~ksllq~~~e~i~~l~~la~~~~~~~~~~~~~~ip~~IMTS~~t~e~t~~~ 199 (380)
||+|+||||+|||||++.||+|+||+++++|||||+++++|++++.+++ +++.|||+||||++||+.|++|
T Consensus 1 va~viLaGG~GtRLg~~~PK~~~~i~~~~gk~~l~~~~~~i~~~~~~~~---------~~~~Ip~~imts~~t~~~t~~~ 71 (266)
T cd04180 1 VAVVLLAGGLGTRLGKDGPKSSTDVGLPSGQCFLQLIGEKILTLQEIDL---------YSCKIPEQLMNSKYTHEKTQCY 71 (266)
T ss_pred CEEEEECCCCccccCCCCCceeeeecCCCCCcHHHHHHHHHHHHHHHhh---------cCCCCCEEEEcCchhHHHHHHH
Confidence 6899999999999999999999999999999999999999999988864 2466999999999999999999
Q ss_pred HhhcCCCCCCCCceEEEEeCCeeeEecCCcccccCCCccccccCCCchhhHHHhhCChHHHHHHCCCeEEEEEcCCCccc
Q 016922 200 FEGHKYFGLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGVDNALV 279 (380)
Q Consensus 200 f~~~~~FGl~~~~V~~f~Q~~~P~~~~~gki~l~~~~~i~~~P~GnGgi~~aL~~~g~l~~l~~~Gi~yi~v~~vDN~L~ 279 (380)
|++|+ ++.++|++|+|+++||++.+|++.++++++++++|+||||+|.+|..+|++++|+++|++|++|+|+||+++
T Consensus 72 l~~~~---~~~~~v~~f~Q~~~P~~~~~~~~~~~~~~~~~~~P~GnGdi~~~L~~sglLd~l~~~G~~yi~v~~vDN~la 148 (266)
T cd04180 72 FEKIN---QKNSYVITFMQGKLPLKNDDDARDPHNKTKCHLFPCGHGDVVLALIHSGHLNKLLEKGYRYIHFIGVDNLLV 148 (266)
T ss_pred HHHcC---CCCCceEEEEeCCceEEeCCCCcccCCCCceeeccCCcHHHHHHHHHCChHHHHHHcCCEEEEEEccCccCc
Confidence 99988 567899999999999999999998999999999999999999999999999999999999999999999999
Q ss_pred ccCCHHHHHHHHHhCCceEEEEeecCCCCcccceEEEEcCCCCeEEEEecccChhhhhhhc-----cCCCcceecccccc
Q 016922 280 RVADPTFLGYFIDKGVSAGAKVVRKAYPQEKVGVFVRRGKGGPLTVVEYSELDPSLASAIN-----QETGRLRFCWSNVC 354 (380)
Q Consensus 280 ~~~Dp~~lG~~~~~~~d~~~kvv~k~~p~e~vGvl~~~~~~g~~~vvEYsel~~~~~~~~~-----~~~g~l~f~~gNi~ 354 (380)
+++||.++|+++.++++++++|++|+.++|++|++|..+ +|+++++||+|++++++++.. +.+|.+.|+++|||
T Consensus 149 ~v~DP~~lG~~~~~~~~~~~kvv~K~~~d~k~G~~~~~~-~g~~~~vEyse~~~~~~~~~~~~~~~~~~~~~~~~~~n~~ 227 (266)
T cd04180 149 KVADPLFIGIAIQNRKAINQKVVPKTRNEESGGYRIANI-NGRVQLLEYDQIKKLLKQKMVNNQIPKDIDDAPFFLFNTN 227 (266)
T ss_pred cccCHHHHHHHHHcCCCEEEEEEECCCCCCeEEEEEEec-CCCEEEEEeccCCHHHHhccccccCcCCCCceeeccceEE
Confidence 999999999999999999999999999999999999872 499999999999999877531 13688999999999
Q ss_pred chhccHHHHHHHHh
Q 016922 355 LHMFTLDFLNQVAN 368 (380)
Q Consensus 355 ~~~f~l~fL~~~~~ 368 (380)
||||+++||+++++
T Consensus 228 ~~~~~l~~l~~~~~ 241 (266)
T cd04180 228 NLINFLVEFKDRVD 241 (266)
T ss_pred EEEEEHHHHHHHHH
Confidence 99999999998764
No 12
>KOG2638 consensus UDP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.9e-44 Score=353.50 Aligned_cols=277 Identities=22% Similarity=0.320 Sum_probs=244.5
Q ss_pred ChHHHHHHHHHHHhcC--CCCCCccccCCCCCccccccCChHHHHHHHHHhhhhhcCCCEEEEEecCCCccccCCCCCCc
Q 016922 63 DLPRVDRIIRCSLRSQ--GLPVAAIEPVPERSVSTVEERTMDERERWWKMGLKAISDGKLAVLLLSGGQGTRLGSSDPKG 140 (380)
Q Consensus 63 d~~~~~~~~~~~~~~~--~~~~~~~~p~p~~~~~~~~~~~~~~~~~~~~~G~~~i~~gkvavvlLAGG~GTRLg~~~PKg 140 (380)
+++.|..+|++++... ...|+.|+|+|++.+..++++... +.+..++. |+|++.|+||+||.||+.+||+
T Consensus 53 e~~~F~~Lf~RyL~~~~~~~~wdkI~~p~~d~vv~y~~i~~~------~~~~~~L~--KLavlKLNGGlGttmGc~gPKS 124 (498)
T KOG2638|consen 53 ELSGFFNLFSRYLREKAPTIDWDKIRPPPEDAVVPYDDIKNV------ELSKSLLN--KLAVLKLNGGLGTTMGCKGPKS 124 (498)
T ss_pred hHHHHHHHHHHHHhccCCccchhhccCCChhhccccccccch------hhHHHhhh--heEEEEecCCcCCccccCCCce
Confidence 4566888999998764 468999999999888888876532 45667786 9999999999999999999999
Q ss_pred cccccCCCCCccHHHHHHHHHHHHHHHHhhhcCCCCCCCCceeEEEEcCCCchHHHHHHHhhcCCCCCCCCceEEEEeCC
Q 016922 141 CVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRKYFEGHKYFGLESDQVTFFQQGT 220 (380)
Q Consensus 141 ~~~i~l~s~ksllq~~~e~i~~l~~la~~~~~~~~~~~~~~ip~~IMTS~~t~e~t~~~f~~~~~FGl~~~~V~~f~Q~~ 220 (380)
+ |++..|.|||++.++||..|.+. |.+.+|+++|+|.+|+++|.++++++..+ +.+|..|.|..
T Consensus 125 ~--ieVR~g~tFLDL~V~QIe~LN~~-----------Y~~dVPlvLMNSfnTdedT~kil~ky~~~---kv~i~TF~QS~ 188 (498)
T KOG2638|consen 125 V--IEVRDGLTFLDLTVRQIENLNKT-----------YNVDVPLVLMNSFNTDEDTQKILKKYAGS---KVDIKTFNQSK 188 (498)
T ss_pred e--EEEcCCCchhHHHHHHHHHHHhh-----------cCCCCCEEEecccccchHHHHHHHHhcCC---ceeEEEecccc
Confidence 9 67789999999999999877654 67889999999999999999999996655 45799999999
Q ss_pred eeeEecCCcccccC---C-CccccccCCCchhhHHHhhCChHHHHHHCCCeEEEEEcCCCcccccCCHHHHHHHHHhCCc
Q 016922 221 IPCVSKDGRFIMET---P-YKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGVDNALVRVADPTFLGYFIDKGVS 296 (380)
Q Consensus 221 ~P~~~~~gki~l~~---~-~~i~~~P~GnGgi~~aL~~~g~l~~l~~~Gi~yi~v~~vDN~L~~~~Dp~~lG~~~~~~~d 296 (380)
+|.++.|..++... + ..-+|+|+|||++|.+|+.||+||++.++|+||+||.|+||+ ++++|..++.+.+.++++
T Consensus 189 ~PRi~~etlLPv~~~~~d~~~d~WYPPGHGd~f~sl~nSG~Ld~llaqGkEylFVSNiDNL-GAtvDL~ILn~~i~~~~e 267 (498)
T KOG2638|consen 189 YPRIDKETLLPVPKLEADSDNEAWYPPGHGDLFDSLHNSGLLDKLLAQGKEYLFVSNIDNL-GATVDLNILNHVINNNIE 267 (498)
T ss_pred CCccccccccCCCcccCCCCcccccCCCCccHHHHHhccchHHHHHhCCceEEEEeccccc-cceeeHHHHHHHhcCCCc
Confidence 99999999887754 2 347899999999999999999999999999999999999996 899999999999999999
Q ss_pred eEEEEeecCCCCcccceEEEEcCCCCeEEEEecccChhhhhhhccCCCcceeccccccchhccHHHHHHHHhc
Q 016922 297 AGAKVVRKAYPQEKVGVFVRRGKGGPLTVVEYSELDPSLASAINQETGRLRFCWSNVCLHMFTLDFLNQVANG 369 (380)
Q Consensus 297 ~~~kvv~k~~p~e~vGvl~~~~~~g~~~vvEYsel~~~~~~~~~~~~g~l~f~~gNi~~~~f~l~fL~~~~~~ 369 (380)
+.|+|+.|+.++-|+|+++.. +|+++++||.|+|++..+++. +. .+|..-|++|.|++++.++++++.
T Consensus 268 y~MEvTdKT~aDvKgGtLi~y--~G~lrlLEiaQVP~ehv~eFk-S~--kkFkifNTNNlWinLkavKrlve~ 335 (498)
T KOG2638|consen 268 YLMEVTDKTRADVKGGTLIQY--EGKLRLLEIAQVPKEHVDEFK-SI--KKFKIFNTNNLWINLKAVKKLVEE 335 (498)
T ss_pred eEEEecccchhhcccceEEee--cCEEEEEEeccCChhHhhhhc-cc--eeEEEeccCCeEEehHHHHHHhhc
Confidence 999999999999999999998 799999999999999887664 23 445556899999999999999874
No 13
>PRK15480 glucose-1-phosphate thymidylyltransferase RfbA; Provisional
Probab=99.37 E-value=1.2e-11 Score=120.99 Aligned_cols=182 Identities=18% Similarity=0.238 Sum_probs=127.5
Q ss_pred CEEEEEecCCCccccCC---CCCCccccccCCCCCccHHHHHHHHHHHHHHHHhhhcCCCCCCCCceeEEEEcCCCchHH
Q 016922 119 KLAVLLLSGGQGTRLGS---SDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDA 195 (380)
Q Consensus 119 kvavvlLAGG~GTRLg~---~~PKg~~~i~l~s~ksllq~~~e~i~~l~~la~~~~~~~~~~~~~~ip~~IMTS~~t~e~ 195 (380)
.+.+|+||||.||||.. ..||.|+|| .+|+++++.++.+.. .+.. .++|++..+..+.
T Consensus 3 ~~kaIILAgG~GtRL~PlT~~~pK~Llpv---~gkPmI~~~l~~l~~---------------aGi~-~I~ii~~~~~~~~ 63 (292)
T PRK15480 3 TRKGIILAGGSGTRLYPVTMAVSKQLLPI---YDKPMIYYPLSTLML---------------AGIR-DILIISTPQDTPR 63 (292)
T ss_pred ceEEEEECCCcccccCcccCCCCceEeEE---CCEEHHHHHHHHHHH---------------CCCC-EEEEEecCCchHH
Confidence 47789999999999984 789999999 899999999988764 2322 2345666666788
Q ss_pred HHHHHhhcCCCCCCCCceEEEEeCCeeeEecCCcccccCCCccccccCCCchhhHHHhhCChHHHHHHCCCeEEEEEcCC
Q 016922 196 TRKYFEGHKYFGLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGVD 275 (380)
Q Consensus 196 t~~~f~~~~~FGl~~~~V~~f~Q~~~P~~~~~gki~l~~~~~i~~~P~GnGgi~~aL~~~g~l~~l~~~Gi~yi~v~~vD 275 (380)
++++|.+.+.||++ +.+.. ...|.|.|+.+....+ +.. +-++ .+.+.|
T Consensus 64 ~~~~l~~g~~~g~~---i~y~~---------------------q~~~~Gta~Al~~a~~------~i~-~~~~-~lv~gD 111 (292)
T PRK15480 64 FQQLLGDGSQWGLN---LQYKV---------------------QPSPDGLAQAFIIGEE------FIG-GDDC-ALVLGD 111 (292)
T ss_pred HHHHHcCccccCce---eEEEE---------------------CCCCCCHHHHHHHHHH------HhC-CCCE-EEEECC
Confidence 99999887778874 33332 3448999999875432 222 2244 455799
Q ss_pred CcccccCCHHHHHHHHHhCCceEEEEeecCCCCcccceEEEEcCCCCeEEEEecccChhhhhhhccCCCcceeccccccc
Q 016922 276 NALVRVADPTFLGYFIDKGVSAGAKVVRKAYPQEKVGVFVRRGKGGPLTVVEYSELDPSLASAINQETGRLRFCWSNVCL 355 (380)
Q Consensus 276 N~L~~~~Dp~~lG~~~~~~~d~~~kvv~k~~p~e~vGvl~~~~~~g~~~vvEYsel~~~~~~~~~~~~g~l~f~~gNi~~ 355 (380)
|++....-..++-.|..++.++++-+.+..+| ++.|++... .+| .|+++.|-|.. + .+ +.+|+++
T Consensus 112 ~i~~~~~l~~ll~~~~~~~~~~tv~~~~v~~p-~~yGvv~~d-~~g--~v~~i~EKP~~------p---~s--~~a~~Gi 176 (292)
T PRK15480 112 NIFYGHDLPKLMEAAVNKESGATVFAYHVNDP-ERYGVVEFD-QNG--TAISLEEKPLQ------P---KS--NYAVTGL 176 (292)
T ss_pred eeeeccCHHHHHHHHHhCCCCeEEEEEEcCCc-ccCcEEEEC-CCC--cEEEEEECCCC------C---CC--CEEEEEE
Confidence 98754444567777877777877666665565 788998764 355 46677666531 1 11 2468899
Q ss_pred hhccHHHHHHH
Q 016922 356 HMFTLDFLNQV 366 (380)
Q Consensus 356 ~~f~l~fL~~~ 366 (380)
++|+.++++.+
T Consensus 177 Y~~~~~v~~~~ 187 (292)
T PRK15480 177 YFYDNDVVEMA 187 (292)
T ss_pred EEEChHHHHHH
Confidence 99999887765
No 14
>TIGR01105 galF UTP-glucose-1-phosphate uridylyltransferase, non-catalytic GalF subunit. GalF is a non-catalytic subunit of the UTP-glucose pyrophosphorylase modulating the enzyme activity to increase the formation of UDP-glucose
Probab=99.33 E-value=2.7e-11 Score=118.71 Aligned_cols=188 Identities=15% Similarity=0.147 Sum_probs=120.2
Q ss_pred CEEEEEecCCCccccC---CCCCCccccccCCCCCccHHHHHHHHHHHHHHHHhhhcCCCCCCCCceeEEEEcCCCchHH
Q 016922 119 KLAVLLLSGGQGTRLG---SSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDA 195 (380)
Q Consensus 119 kvavvlLAGG~GTRLg---~~~PKg~~~i~l~s~ksllq~~~e~i~~l~~la~~~~~~~~~~~~~~ip~~IMTS~~t~e~ 195 (380)
.+.+|+||||.||||. ...||.|.|| .|||++++.++.+.. .+ |.-+++...+..+.
T Consensus 3 ~mkavILAaG~GTRL~PlT~~~PKpLvpV---~gkPiI~~vl~~l~~---------------~G--i~~ivivv~~~~~~ 62 (297)
T TIGR01105 3 NLKAVIPVAGLGMHMLPATKAIPKEMLPI---VDKPMIQYIVDEIVA---------------AG--IKEIVLVTHASKNA 62 (297)
T ss_pred ceEEEEECCCCCcccCcccCCCCceeeEE---CCEEHHHHHHHHHHH---------------CC--CCEEEEEecCChHH
Confidence 4778999999999998 4679999999 899999999998764 23 44567777789999
Q ss_pred HHHHHhhcCC----------------------CCCCCCceEEEEeCCeeeEecCCcccccCCCccccccCCCchhhHHHh
Q 016922 196 TRKYFEGHKY----------------------FGLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALK 253 (380)
Q Consensus 196 t~~~f~~~~~----------------------FGl~~~~V~~f~Q~~~P~~~~~gki~l~~~~~i~~~P~GnGgi~~aL~ 253 (380)
+.+||..+.. +|+ +|.+ .....|.|+||......
T Consensus 63 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~i~~---------------------~~q~~~lGtg~Av~~a~ 118 (297)
T TIGR01105 63 VENHFDTSYELESLLEQRVKRQLLAEVQSICPPGV---TIMN---------------------VRQAQPLGLGHSILCAR 118 (297)
T ss_pred HHHHHhchHHHHHHHHHhcchhhhhhhhhcCCCCc---eEEE---------------------eeCCCcCchHHHHHHHH
Confidence 9999965211 111 1222 23457999999776553
Q ss_pred hCChHHHHHHCCCeEEEEEcCCCcccc-------cCCHHHHHHHHHhCCceEEEEeecCCCCcccceEEEE---cCCCCe
Q 016922 254 SSKLLEDMATRGIKYIDCYGVDNALVR-------VADPTFLGYFIDKGVSAGAKVVRKAYPQEKVGVFVRR---GKGGPL 323 (380)
Q Consensus 254 ~~g~l~~l~~~Gi~yi~v~~vDN~L~~-------~~Dp~~lG~~~~~~~d~~~kvv~k~~p~e~vGvl~~~---~~~g~~ 323 (380)
. .+ +-+-+.+.+.|+++.. ..--.++-++.+.++.+.+......+ ..++|++... +.+|+.
T Consensus 119 ~-----~l---~~~~flvv~gD~l~~~~~~~~~~~~l~~li~~~~~~~~~~~~~~~~~~~-~~~yGvv~~~~~~d~~g~v 189 (297)
T TIGR01105 119 P-----VV---GDNPFVVVLPDIIIDDATADPLRYNLAAMIARFNETGRSQVLAKRMPGD-LSEYSVIQTKEPLDREGKV 189 (297)
T ss_pred H-----Hh---CCCCEEEEECCeeccccccccchhHHHHHHHHHHHhCCcEEEEEEcCCC-CccceEEEecccccCCCCe
Confidence 2 22 1133455579986421 01113566665566655332222234 4788999863 224553
Q ss_pred -EEEEecccChhhhhhhccCCCcceeccccccchhccHHHHHHHH
Q 016922 324 -TVVEYSELDPSLASAINQETGRLRFCWSNVCLHMFTLDFLNQVA 367 (380)
Q Consensus 324 -~vvEYsel~~~~~~~~~~~~g~l~f~~gNi~~~~f~l~fL~~~~ 367 (380)
.|+|+.|-|..-.. -.+ +..|+++++|+.+.++.+-
T Consensus 190 ~~I~~~~EKP~~~~~------~~s--~~~~~GiYi~~~~i~~~l~ 226 (297)
T TIGR01105 190 SRIVEFIEKPDQPQT------LDS--DLMAVGRYVLSADIWAELE 226 (297)
T ss_pred eeEeEEEECCCCccc------CCc--CEEEEEEEEECHHHHHHHh
Confidence 67898877632111 011 3479999999999888663
No 15
>TIGR01207 rmlA glucose-1-phosphate thymidylyltransferase, short form. This model describes a tightly conserved but broadly distributed subfamily (here designated as short form) of known and putative bacterial glucose-1-phosphate thymidylyltransferases. It is well characterized in several species as the first of four enzymes involved in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.
Probab=99.31 E-value=3.2e-11 Score=117.51 Aligned_cols=179 Identities=16% Similarity=0.217 Sum_probs=123.0
Q ss_pred EEEecCCCccccCC---CCCCccccccCCCCCccHHHHHHHHHHHHHHHHhhhcCCCCCCCCceeEEEEcCCCchHHHHH
Q 016922 122 VLLLSGGQGTRLGS---SDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRK 198 (380)
Q Consensus 122 vvlLAGG~GTRLg~---~~PKg~~~i~l~s~ksllq~~~e~i~~l~~la~~~~~~~~~~~~~~ip~~IMTS~~t~e~t~~ 198 (380)
+|+||||.||||.. ..||.|+|| .+|+++++.++.+.. .++. .++|.+..+..+.+++
T Consensus 2 aIILAgG~GtRL~plT~~~pK~Llpv---~gkPmI~~~L~~l~~---------------aGi~-~I~iv~~~~~~~~~~~ 62 (286)
T TIGR01207 2 GIILAGGSGTRLYPITRAVSKQLLPI---YDKPMIYYPLSTLML---------------AGIR-DILIISTPQDTPRFQQ 62 (286)
T ss_pred EEEECCCCCccCCcccCCCCceeeEE---CCEEhHHHHHHHHHH---------------CCCC-EEEEEecCCcHHHHHH
Confidence 58999999999974 789999999 889999999887763 2321 3445676777889999
Q ss_pred HHhhcCCCCCCCCceEEEEeCCeeeEecCCcccccCCCccccccCCCchhhHHHhhCChHHHHHHCCCeEEEEEcCCCcc
Q 016922 199 YFEGHKYFGLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGVDNAL 278 (380)
Q Consensus 199 ~f~~~~~FGl~~~~V~~f~Q~~~P~~~~~gki~l~~~~~i~~~P~GnGgi~~aL~~~g~l~~l~~~Gi~yi~v~~vDN~L 278 (380)
+|.+...||++ +.+..| ..|.|+|+.+....+ +.. + +-+.+.+.||++
T Consensus 63 ~lg~g~~~g~~---i~~~~q---------------------~~~~Gta~al~~a~~------~l~-~-~~~~li~gD~i~ 110 (286)
T TIGR01207 63 LLGDGSQWGVN---LSYAVQ---------------------PSPDGLAQAFIIGED------FIG-G-DPSALVLGDNIF 110 (286)
T ss_pred HhccccccCce---EEEEEc---------------------cCCCCHHHHHHHHHH------HhC-C-CCEEEEECCEec
Confidence 99887778874 334332 358999998875432 222 1 334455799987
Q ss_pred cccCCHHHHHHHHHhCCceEEEEeecCCCCcccceEEEEcCCCCeEEEEecccChhhhhhhccCCCcceeccccccchhc
Q 016922 279 VRVADPTFLGYFIDKGVSAGAKVVRKAYPQEKVGVFVRRGKGGPLTVVEYSELDPSLASAINQETGRLRFCWSNVCLHMF 358 (380)
Q Consensus 279 ~~~~Dp~~lG~~~~~~~d~~~kvv~k~~p~e~vGvl~~~~~~g~~~vvEYsel~~~~~~~~~~~~g~l~f~~gNi~~~~f 358 (380)
....-..++-.+.+.+.++++-+.+..+| ++.|++... .+| .|+++.|-|.. + .+ +..|+++++|
T Consensus 111 ~~~~l~~ll~~~~~~~~~~ti~~~~v~~p-~~yGvv~~d-~~g--~V~~i~EKp~~------~---~s--~~~~~GiYi~ 175 (286)
T TIGR01207 111 YGHDLSDLLKRAAARESGATVFAYQVSDP-ERYGVVEFD-SNG--RAISIEEKPAQ------P---KS--NYAVTGLYFY 175 (286)
T ss_pred cccCHHHHHHHHHhcCCCcEEEEEEccCH-HHCceEEEC-CCC--eEEEEEECCCC------C---CC--CEEEEEEEEE
Confidence 43332456777777777877666665565 788998764 345 56677665431 1 11 2368899999
Q ss_pred cHHHHHHH
Q 016922 359 TLDFLNQV 366 (380)
Q Consensus 359 ~l~fL~~~ 366 (380)
+.++++.+
T Consensus 176 ~~~i~~~l 183 (286)
T TIGR01207 176 DNRVVEIA 183 (286)
T ss_pred chHHHHHH
Confidence 99876644
No 16
>COG1208 GCD1 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis]
Probab=99.30 E-value=4.9e-11 Score=119.74 Aligned_cols=179 Identities=23% Similarity=0.346 Sum_probs=132.3
Q ss_pred EEEEEecCCCccccC---CCCCCccccccCCCCCccHHHHHHHHHHHHHHHHhhhcCCCCCCCCceeEEEEcCCCchHHH
Q 016922 120 LAVLLLSGGQGTRLG---SSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDAT 196 (380)
Q Consensus 120 vavvlLAGG~GTRLg---~~~PKg~~~i~l~s~ksllq~~~e~i~~l~~la~~~~~~~~~~~~~~ip~~IMTS~~t~e~t 196 (380)
+-+|+||||.||||. .+.||+|+|| .+|+++++.++.|.+ .+ +--++++.++..+.+
T Consensus 2 mkavILagG~GtRLrPlT~~~PKPllpI---~gkPii~~~l~~L~~---------------~G--v~eivi~~~y~~~~i 61 (358)
T COG1208 2 MKAVILAGGYGTRLRPLTDDRPKPLLPI---AGKPLIEYVLEALAA---------------AG--VEEIVLVVGYLGEQI 61 (358)
T ss_pred ceEEEEeCCccccccccccCCCccccee---CCccHHHHHHHHHHH---------------CC--CcEEEEEeccchHHH
Confidence 568999999999998 6789999999 799999999998764 24 667888899999999
Q ss_pred HHHHhhcCCCCCCCCceEEEEeCCeeeEecCCcccccCCCccccccCCCchhhHHHhhCChHHHHHHCCCeEEEEEcCCC
Q 016922 197 RKYFEGHKYFGLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGVDN 276 (380)
Q Consensus 197 ~~~f~~~~~FGl~~~~V~~f~Q~~~P~~~~~gki~l~~~~~i~~~P~GnGgi~~aL~~~g~l~~l~~~Gi~yi~v~~vDN 276 (380)
++||.+...+|++. .+ ..+..|.|+||.++...+ .+ +.+-+++.+.|+
T Consensus 62 ~~~~~d~~~~~~~I---~y---------------------~~e~~~lGTag~l~~a~~-----~l---~~~~f~v~~GDv 109 (358)
T COG1208 62 EEYFGDGEGLGVRI---TY---------------------VVEKEPLGTAGALKNALD-----LL---GGDDFLVLNGDV 109 (358)
T ss_pred HHHHhcccccCCce---EE---------------------EecCCcCccHHHHHHHHH-----hc---CCCcEEEEECCe
Confidence 99999876667643 33 345569999999986643 22 226788889999
Q ss_pred cccccCC-HHHHHHHHHhCCceEEEEeecCCCCcccceEEEEcCCCCeEEEEecccChhhhhhhccCCCcceeccccccc
Q 016922 277 ALVRVAD-PTFLGYFIDKGVSAGAKVVRKAYPQEKVGVFVRRGKGGPLTVVEYSELDPSLASAINQETGRLRFCWSNVCL 355 (380)
Q Consensus 277 ~L~~~~D-p~~lG~~~~~~~d~~~kvv~k~~p~e~vGvl~~~~~~g~~~vvEYsel~~~~~~~~~~~~g~l~f~~gNi~~ 355 (380)
+.. .| -.++.++..+++..++..++...+ ...|++.... ++ -.|.++.|-|.. .. .. + +..|..+
T Consensus 110 ~~~--~dl~~l~~~~~~~~~~~~~~~~~~~~~-~~~Gvv~~~~-~~-~~v~~f~ekp~~-~~-~~---~----~~in~Gi 175 (358)
T COG1208 110 LTD--LDLSELLEFHKKKGALATIALTRVLDP-SEFGVVETDD-GD-GRVVEFREKPGP-EE-PP---S----NLINAGI 175 (358)
T ss_pred eec--cCHHHHHHHHHhccCccEEEEEecCCC-CcCceEEecC-CC-ceEEEEEecCCC-CC-CC---C----ceEEeEE
Confidence 853 34 448888888877777777777666 6779877642 22 468888888742 11 10 0 2357888
Q ss_pred hhccHHHHH
Q 016922 356 HMFTLDFLN 364 (380)
Q Consensus 356 ~~f~l~fL~ 364 (380)
++|+.+.++
T Consensus 176 yi~~~~v~~ 184 (358)
T COG1208 176 YIFDPEVFD 184 (358)
T ss_pred EEECHHHhh
Confidence 888888777
No 17
>TIGR02092 glgD glucose-1-phosphate adenylyltransferase, GlgD subunit. This family is GlgD, an apparent regulatory protein that appears in an alpha2/beta2 heterotetramer with GlgC (glucose-1-phosphate adenylyltransferase, TIGR02091) in a subset of bacteria that use GlgC for glycogen biosynthesis.
Probab=99.26 E-value=6.5e-11 Score=118.50 Aligned_cols=192 Identities=11% Similarity=0.122 Sum_probs=121.3
Q ss_pred CCEEEEEecCCCccccC---CCCCCccccccCCCCC-ccHHHHHHHHHHHHHHHHhhhcCCCCCCCCceeEEEEcCCCch
Q 016922 118 GKLAVLLLSGGQGTRLG---SSDPKGCVNIGLPSGK-SLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTD 193 (380)
Q Consensus 118 gkvavvlLAGG~GTRLg---~~~PKg~~~i~l~s~k-sllq~~~e~i~~l~~la~~~~~~~~~~~~~~ip~~IMTS~~t~ 193 (380)
+++.+|+||||.||||+ .+.||+|.|| .|| +++++.++.+.+ .+ +.-+++...+.+
T Consensus 1 ~~~~avila~g~gtRL~PLT~~~PKpLlpV---~gk~PlIe~~l~~L~~---------------~G--i~~I~iv~~~~~ 60 (369)
T TIGR02092 1 NKMSAIINLTESSKNLSPLTKVRPLASLPF---GGRYRLIDFPLSNMVN---------------AG--IRNVFIFFKNKE 60 (369)
T ss_pred CcEEEEEECCCCCccccccccCCccccccc---CCeeeEEEEEhhhhhc---------------cC--CCEEEEEeCCCc
Confidence 36889999999999998 5789999999 899 899999998874 23 445677777776
Q ss_pred H-HHHHHHhhcCCCCCCCCce---EEEEeCCeeeEecCCcccccCCCccccccCCCchhhHHHhhCChHHHHHHCCCeEE
Q 016922 194 D-ATRKYFEGHKYFGLESDQV---TFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYI 269 (380)
Q Consensus 194 e-~t~~~f~~~~~FGl~~~~V---~~f~Q~~~P~~~~~gki~l~~~~~i~~~P~GnGgi~~aL~~~g~l~~l~~~Gi~yi 269 (380)
+ .+++||.+...||++..+. .++.| ...|.|+|+.+..... .+.+...+-+++
T Consensus 61 ~~~I~~~l~~~~~~~~~~~~~~~~~~~~~--------------------e~~~l~tg~~~a~~~a---~~~l~~~~~~~~ 117 (369)
T TIGR02092 61 RQSLFDHLGSGREWDLHRKRDGLFVFPYN--------------------DRDDLSEGGKRYFSQN---LEFLKRSTSEYT 117 (369)
T ss_pred HHHHHHHHhCCCCCCcccccCcEEEEecc--------------------CCCCcccChHHHHHHH---HHHHHhCCCCEE
Confidence 6 9999998877788764321 11111 2346677776533221 122322233688
Q ss_pred EEEcCCCcccccCCHHHHHHHHHhCCceEEEEeecC--CCCcccceEEEEcCCCCeEEEEecccChhhhhhhccCCCcce
Q 016922 270 DCYGVDNALVRVADPTFLGYFIDKGVSAGAKVVRKA--YPQEKVGVFVRRGKGGPLTVVEYSELDPSLASAINQETGRLR 347 (380)
Q Consensus 270 ~v~~vDN~L~~~~Dp~~lG~~~~~~~d~~~kvv~k~--~p~e~vGvl~~~~~~g~~~vvEYsel~~~~~~~~~~~~g~l~ 347 (380)
+|.+.|++. ...--.++-+|.++++++++-+.+.. .+ ...|+++..+.+| .+.++.+-++. + . .
T Consensus 118 lvlnGD~l~-~~dl~~ll~~h~~~~a~~tl~~~~v~~~~~-~~~g~vv~~~~~g--~v~~~~~~~~~------~--~--~ 183 (369)
T TIGR02092 118 VVLNSHMVC-NIDLKAVLKYHEETGKDITVVYKKVKPADA-SEYDTILRFDESG--KVKSIGQNLNP------E--E--E 183 (369)
T ss_pred EEECCCEEE-ecCHHHHHHHHHHcCCCEEEEEEecCHHHc-cccCcEEEEcCCC--CEEeccccCCC------C--C--c
Confidence 999999964 43333577788888898876665432 33 3445544433345 34443221110 0 0 0
Q ss_pred eccccccchhccHHHHHHHH
Q 016922 348 FCWSNVCLHMFTLDFLNQVA 367 (380)
Q Consensus 348 f~~gNi~~~~f~l~fL~~~~ 367 (380)
. ..|+++++|+.+.|.+++
T Consensus 184 ~-~~~~Giyi~~~~~l~~~l 202 (369)
T TIGR02092 184 E-NISLDIYIVSTDLLIELL 202 (369)
T ss_pred c-eeeeeEEEEEHHHHHHHH
Confidence 1 147788899887665544
No 18
>PRK05293 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=99.26 E-value=2e-10 Score=115.34 Aligned_cols=195 Identities=16% Similarity=0.215 Sum_probs=126.9
Q ss_pred CCEEEEEecCCCccccCC---CCCCccccccCCCCC-ccHHHHHHHHHHHHHHHHhhhcCCCCCCCCceeEEEEcCCCch
Q 016922 118 GKLAVLLLSGGQGTRLGS---SDPKGCVNIGLPSGK-SLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTD 193 (380)
Q Consensus 118 gkvavvlLAGG~GTRLg~---~~PKg~~~i~l~s~k-sllq~~~e~i~~l~~la~~~~~~~~~~~~~~ip~~IMTS~~t~ 193 (380)
+++.+||||||.||||.. +.||+|.|| .|| +++++.++.+.+ .+ |--+++..++..
T Consensus 2 ~~m~avILAaG~GtRl~plT~~~PK~llpv---~gk~pli~~~l~~l~~---------------~G--i~~i~iv~~~~~ 61 (380)
T PRK05293 2 KEMLAMILAGGQGTRLGKLTKNIAKPAVPF---GGKYRIIDFTLSNCAN---------------SG--IDTVGVLTQYQP 61 (380)
T ss_pred CcEEEEEECCCCCcccchhhcCCccceeee---CCceeehhHHHHHHHh---------------CC--CCEEEEEecCCH
Confidence 478999999999999985 789999999 789 899999998764 23 334455557889
Q ss_pred HHHHHHHhhcCCCCCCCCc--eEEEEeCCeeeEecCCcccccCCCccc-cccCCCchhhHHHhhCChHHHHHHCCCeEEE
Q 016922 194 DATRKYFEGHKYFGLESDQ--VTFFQQGTIPCVSKDGRFIMETPYKVA-KAPDGNGGVYSALKSSKLLEDMATRGIKYID 270 (380)
Q Consensus 194 e~t~~~f~~~~~FGl~~~~--V~~f~Q~~~P~~~~~gki~l~~~~~i~-~~P~GnGgi~~aL~~~g~l~~l~~~Gi~yi~ 270 (380)
+.+++||.+...|+++..+ +.+. | |.. .+.. ..|.|+|+.+.... +.+....-++++
T Consensus 62 ~~i~~~~~~~~~~~~~~~~~~~~i~-~---~~~-----------~~~~~~~~~Gta~al~~a~-----~~l~~~~~~~~l 121 (380)
T PRK05293 62 LELNNHIGIGSPWDLDRINGGVTIL-P---PYS-----------ESEGGKWYKGTAHAIYQNI-----DYIDQYDPEYVL 121 (380)
T ss_pred HHHHHHHhCCCcccccCCCCCEEEe-C---Ccc-----------cCCCCcccCCcHHHHHHHH-----HHHHhCCCCEEE
Confidence 9999999887778775431 2221 0 000 0011 12589988766442 333322336888
Q ss_pred EEcCCCcccccCCHHHHHHHHHhCCceEEEEeec--CCCCcccceEEEEcCCCCeEEEEecccChhhhhhhccCCCccee
Q 016922 271 CYGVDNALVRVADPTFLGYFIDKGVSAGAKVVRK--AYPQEKVGVFVRRGKGGPLTVVEYSELDPSLASAINQETGRLRF 348 (380)
Q Consensus 271 v~~vDN~L~~~~Dp~~lG~~~~~~~d~~~kvv~k--~~p~e~vGvl~~~~~~g~~~vvEYsel~~~~~~~~~~~~g~l~f 348 (380)
|.+.|++. ...--.++-.|...++++++-+.+. .+ ..++|++... .+| .|.++.|-|... ..
T Consensus 122 V~~gD~l~-~~d~~~ll~~h~~~~~~~tl~~~~~~~~~-~~~yG~v~~d-~~g--~V~~~~eKp~~~---------~~-- 185 (380)
T PRK05293 122 ILSGDHIY-KMDYDKMLDYHKEKEADVTIAVIEVPWEE-ASRFGIMNTD-ENM--RIVEFEEKPKNP---------KS-- 185 (380)
T ss_pred EecCCEEE-cCCHHHHHHHHHhcCCCEEEEEEEcchhh-ccccCEEEEC-CCC--cEEEEEeCCCCC---------Cc--
Confidence 99999975 3333346677777788865544322 23 3677988663 345 567777664311 01
Q ss_pred ccccccchhccHHHHHHHHh
Q 016922 349 CWSNVCLHMFTLDFLNQVAN 368 (380)
Q Consensus 349 ~~gNi~~~~f~l~fL~~~~~ 368 (380)
+..|+++++|+.++|.+++.
T Consensus 186 ~~~~~Giyi~~~~~l~~~l~ 205 (380)
T PRK05293 186 NLASMGIYIFNWKRLKEYLI 205 (380)
T ss_pred ceeeeEEEEEcHHHHHHHHH
Confidence 23588899999988877654
No 19
>PRK00844 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=99.21 E-value=4.7e-10 Score=114.18 Aligned_cols=203 Identities=14% Similarity=0.231 Sum_probs=128.8
Q ss_pred CCEEEEEecCCCccccC---CCCCCccccccCCCCC-ccHHHHHHHHHHHHHHHHhhhcCCCCCCCCceeEEEEcCCCch
Q 016922 118 GKLAVLLLSGGQGTRLG---SSDPKGCVNIGLPSGK-SLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTD 193 (380)
Q Consensus 118 gkvavvlLAGG~GTRLg---~~~PKg~~~i~l~s~k-sllq~~~e~i~~l~~la~~~~~~~~~~~~~~ip~~IMTS~~t~ 193 (380)
+++.+|+||||.||||. .+.||+|+|| .|| +++++.++.+.. .+ |.-+++...+..
T Consensus 4 ~~~~avILAaG~GtRl~PLT~~~PK~llPv---~gk~plI~~~L~~l~~---------------~G--i~~i~iv~~~~~ 63 (407)
T PRK00844 4 PKVLAIVLAGGEGKRLMPLTADRAKPAVPF---GGSYRLIDFVLSNLVN---------------SG--YLRIYVLTQYKS 63 (407)
T ss_pred CceEEEEECCCCCCccchhhcCCcccceee---CCcceEhHHHHHHHHH---------------CC--CCEEEEEeccCH
Confidence 48999999999999999 7889999999 888 999999887764 23 555677778899
Q ss_pred HHHHHHHhhcCCCCCCCCceEEEEeCCeeeEecCCcccccCCCccccccCCCchhhHHHhhCChHHHHHHCCCeEEEEEc
Q 016922 194 DATRKYFEGHKYFGLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYG 273 (380)
Q Consensus 194 e~t~~~f~~~~~FGl~~~~V~~f~Q~~~P~~~~~gki~l~~~~~i~~~P~GnGgi~~aL~~~g~l~~l~~~Gi~yi~v~~ 273 (380)
+.+.+||.+. +++....+.++.. .|.-. ..-...|.|+||.+.... +.+....-++++|.+
T Consensus 64 ~~i~~~~~~~--~~~~~~~~~~~~~--~~~~~----------~~~~~~~lGta~al~~a~-----~~i~~~~~~~~lv~~ 124 (407)
T PRK00844 64 HSLDRHISQT--WRLSGLLGNYITP--VPAQQ----------RLGKRWYLGSADAIYQSL-----NLIEDEDPDYVVVFG 124 (407)
T ss_pred HHHHHHHHhC--cCccccCCCeEEE--CCccc----------CCCCCcccCCHHHHHHHH-----HHHHhcCCCEEEEec
Confidence 9999999742 3332111222110 00000 001233789998876442 334333446888999
Q ss_pred CCCcccccCCHHHHHHHHHhCCceEEEEee--cCCCCcccceEEEEcCCCCeEEEEecccChhhhhhhccCCCcceeccc
Q 016922 274 VDNALVRVADPTFLGYFIDKGVSAGAKVVR--KAYPQEKVGVFVRRGKGGPLTVVEYSELDPSLASAINQETGRLRFCWS 351 (380)
Q Consensus 274 vDN~L~~~~Dp~~lG~~~~~~~d~~~kvv~--k~~p~e~vGvl~~~~~~g~~~vvEYsel~~~~~~~~~~~~g~l~f~~g 351 (380)
.|++. ...--.++-+|...++++++-+.+ ...+ .+.|++... .+| .|.++.|-|........ . ......
T Consensus 125 gD~v~-~~dl~~l~~~h~~~~~~~ti~~~~~~~~~~-~~~Gvv~~d-~~g--~v~~~~eKp~~~~~~~~--~--~~~~~~ 195 (407)
T PRK00844 125 ADHVY-RMDPRQMVDFHIESGAGVTVAAIRVPREEA-SAFGVIEVD-PDG--RIRGFLEKPADPPGLPD--D--PDEALA 195 (407)
T ss_pred CCEEE-cCCHHHHHHHHHhcCCcEEEEEEecchHHc-ccCCEEEEC-CCC--CEEEEEECCCCcccccC--C--CCCcEE
Confidence 99974 333345778888888887655432 2333 567988763 345 46677665542111000 0 001246
Q ss_pred cccchhccHHHHHHHHh
Q 016922 352 NVCLHMFTLDFLNQVAN 368 (380)
Q Consensus 352 Ni~~~~f~l~fL~~~~~ 368 (380)
|+++++|+.++|.++++
T Consensus 196 ~~Giyi~~~~~l~~~l~ 212 (407)
T PRK00844 196 SMGNYVFTTDALVDALR 212 (407)
T ss_pred EeEEEEEeHHHHHHHHH
Confidence 88899999999866544
No 20
>cd06425 M1P_guanylylT_B_like_N N-terminal domain of the M1P-guanylyltransferase B-isoform like proteins. GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain and a C-terminal Lefthanded-beta-Helix fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repression of GDP-mannose pyrophosphorylase in yeast leads to phenotypes, such as cell lysis, defective cell wall, and failure of polarized growth and cell separation.
Probab=99.20 E-value=4.1e-10 Score=105.45 Aligned_cols=183 Identities=19% Similarity=0.290 Sum_probs=121.9
Q ss_pred EEEEecCCCccccCC---CCCCccccccCCCCCccHHHHHHHHHHHHHHHHhhhcCCCCCCCCceeEEEEcCCCchHHHH
Q 016922 121 AVLLLSGGQGTRLGS---SDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATR 197 (380)
Q Consensus 121 avvlLAGG~GTRLg~---~~PKg~~~i~l~s~ksllq~~~e~i~~l~~la~~~~~~~~~~~~~~ip~~IMTS~~t~e~t~ 197 (380)
-+|+||||.||||+. +.||+++|+ .+++++++.++.+.. .+ +.-++....+.++.++
T Consensus 2 ~~iIlAaG~g~R~~~lt~~~pK~llpv---~g~pli~~~l~~l~~---------------~g--~~~v~iv~~~~~~~~~ 61 (233)
T cd06425 2 KALILVGGYGTRLRPLTLTVPKPLVEF---CNKPMIEHQIEALAK---------------AG--VKEIILAVNYRPEDMV 61 (233)
T ss_pred cEEEecCCCccccCccccCCCCccCeE---CCcchHHHHHHHHHH---------------CC--CcEEEEEeeeCHHHHH
Confidence 368999999999973 689999999 789999999998764 12 3344555567788899
Q ss_pred HHHhhc-CCCCCCCCceEEEEeCCeeeEecCCcccccCCCccccccCCCchhhHHHhhCChHHHHHHCCCeEEEEEcCCC
Q 016922 198 KYFEGH-KYFGLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGVDN 276 (380)
Q Consensus 198 ~~f~~~-~~FGl~~~~V~~f~Q~~~P~~~~~gki~l~~~~~i~~~P~GnGgi~~aL~~~g~l~~l~~~Gi~yi~v~~vDN 276 (380)
+++.+. ..+|+. +.+ .....|.|.|+.+..... .+ ...-+-+.+.+.|+
T Consensus 62 ~~l~~~~~~~~~~---i~~---------------------~~~~~~~G~~~al~~a~~-----~~-~~~~~~~lv~~~D~ 111 (233)
T cd06425 62 PFLKEYEKKLGIK---ITF---------------------SIETEPLGTAGPLALARD-----LL-GDDDEPFFVLNSDV 111 (233)
T ss_pred HHHhcccccCCeE---EEe---------------------ccCCCCCccHHHHHHHHH-----Hh-ccCCCCEEEEeCCE
Confidence 999753 123331 111 013447898887665432 22 22112356678998
Q ss_pred cccccCCHHHHHHHHHhCCceEEEEeecCCCCcccceEEEEcCCCCeEEEEecccChhhhhhhccCCCcceeccccccch
Q 016922 277 ALVRVADPTFLGYFIDKGVSAGAKVVRKAYPQEKVGVFVRRGKGGPLTVVEYSELDPSLASAINQETGRLRFCWSNVCLH 356 (380)
Q Consensus 277 ~L~~~~Dp~~lG~~~~~~~d~~~kvv~k~~p~e~vGvl~~~~~~g~~~vvEYsel~~~~~~~~~~~~g~l~f~~gNi~~~ 356 (380)
+. ...-..++-++.+.++++++-+.+...+ ++.|++.....+| .|+++.|-|... .. +..|++++
T Consensus 112 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~v~~d~~~~--~v~~~~ekp~~~---------~~--~~~~~Giy 176 (233)
T cd06425 112 IC-DFPLAELLDFHKKHGAEGTILVTKVEDP-SKYGVVVHDENTG--RIERFVEKPKVF---------VG--NKINAGIY 176 (233)
T ss_pred ee-CCCHHHHHHHHHHcCCCEEEEEEEcCCc-cccCeEEEcCCCC--EEEEEEECCCCC---------CC--CEEEEEEE
Confidence 75 3334568888888899988877766544 6779886642134 688887654421 11 23688899
Q ss_pred hccHHHHHHHHh
Q 016922 357 MFTLDFLNQVAN 368 (380)
Q Consensus 357 ~f~l~fL~~~~~ 368 (380)
+|+.++++.+.+
T Consensus 177 i~~~~~l~~l~~ 188 (233)
T cd06425 177 ILNPSVLDRIPL 188 (233)
T ss_pred EECHHHHHhccc
Confidence 999999987654
No 21
>cd02538 G1P_TT_short G1P_TT_short is the short form of glucose-1-phosphate thymidylyltransferase. This family is the short form of glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The homotetrameric, feedback inhibited short form is found in numerous bacterial species that produce dTDP-L-rhamnose. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced.
Probab=99.20 E-value=2.8e-10 Score=107.01 Aligned_cols=180 Identities=16% Similarity=0.175 Sum_probs=115.9
Q ss_pred EEEEecCCCccccCC---CCCCccccccCCCCCccHHHHHHHHHHHHHHHHhhhcCCCCCCCCceeEEEEcCCCchHHHH
Q 016922 121 AVLLLSGGQGTRLGS---SDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATR 197 (380)
Q Consensus 121 avvlLAGG~GTRLg~---~~PKg~~~i~l~s~ksllq~~~e~i~~l~~la~~~~~~~~~~~~~~ip~~IMTS~~t~e~t~ 197 (380)
.+|+||||.||||+. ..||+++|+ .+++++++.++.+.. .++. ..+|.++.+..+.+.
T Consensus 2 ~~iIlAaG~gtRl~plt~~~pK~llpv---~~~pli~~~l~~l~~---------------~gi~-~i~vv~~~~~~~~~~ 62 (240)
T cd02538 2 KGIILAGGSGTRLYPLTKVVSKQLLPV---YDKPMIYYPLSTLML---------------AGIR-EILIISTPEDLPLFK 62 (240)
T ss_pred eEEEEcCcCcccCCccccCCCceeeEE---CCEEhHHHHHHHHHH---------------CCCC-EEEEEeCcchHHHHH
Confidence 479999999999974 789999999 589999999887763 2321 344556656668899
Q ss_pred HHHhhcCCCCCCCCceEEEEeCCeeeEecCCcccccCCCccccccCCCchhhHHHhhCChHHHHHHCCCeEEEEEcCCCc
Q 016922 198 KYFEGHKYFGLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGVDNA 277 (380)
Q Consensus 198 ~~f~~~~~FGl~~~~V~~f~Q~~~P~~~~~gki~l~~~~~i~~~P~GnGgi~~aL~~~g~l~~l~~~Gi~yi~v~~vDN~ 277 (380)
+++.+...+++. |.+- ....|.|+|+.+.+... .+ . + +.+++.+.|++
T Consensus 63 ~~l~~~~~~~~~---i~~~---------------------~~~~~~G~~~al~~a~~-----~~-~-~-~~~lv~~gD~~ 110 (240)
T cd02538 63 ELLGDGSDLGIR---ITYA---------------------VQPKPGGLAQAFIIGEE-----FI-G-D-DPVCLILGDNI 110 (240)
T ss_pred HHHhcccccCce---EEEe---------------------eCCCCCCHHHHHHHHHH-----hc-C-C-CCEEEEECCEE
Confidence 999876666653 2221 12347788876654322 12 1 1 34566689987
Q ss_pred ccccCCHHHHHHHHHhCCceEEEEeecCCCCcccceEEEEcCCCCeEEEEecccChhhhhhhccCCCcceeccccccchh
Q 016922 278 LVRVADPTFLGYFIDKGVSAGAKVVRKAYPQEKVGVFVRRGKGGPLTVVEYSELDPSLASAINQETGRLRFCWSNVCLHM 357 (380)
Q Consensus 278 L~~~~Dp~~lG~~~~~~~d~~~kvv~k~~p~e~vGvl~~~~~~g~~~vvEYsel~~~~~~~~~~~~g~l~f~~gNi~~~~ 357 (380)
+....--.++-++.+++.++++-+.+..+| ++.|++... .+| .|+++.|-|... .. +..|+++++
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~v~~d-~~g--~v~~~~ekp~~~---------~~--~~~~~Giyi 175 (240)
T cd02538 111 FYGQGLSPILQRAAAQKEGATVFGYEVNDP-ERYGVVEFD-ENG--RVLSIEEKPKKP---------KS--NYAVTGLYF 175 (240)
T ss_pred EccHHHHHHHHHHHhcCCCcEEEEEECCch-hcCceEEec-CCC--cEEEEEECCCCC---------CC--CeEEEEEEE
Confidence 533212235666666778877666555544 678987664 355 567776643310 01 135888999
Q ss_pred ccHHHHHHH
Q 016922 358 FTLDFLNQV 366 (380)
Q Consensus 358 f~l~fL~~~ 366 (380)
|+.++++.+
T Consensus 176 ~~~~~l~~l 184 (240)
T cd02538 176 YDNDVFEIA 184 (240)
T ss_pred ECHHHHHHH
Confidence 999988654
No 22
>PF00483 NTP_transferase: Nucleotidyl transferase This Prosite entry is only a sub-family of the Pfam entry.; InterPro: IPR005835 Nucleotidyl transferases transfer nucleotides from one compound to another. This domain is found in a number of enzymes that transfer nucleotides onto phosphosugars.; GO: 0016779 nucleotidyltransferase activity, 0009058 biosynthetic process; PDB: 1YP2_C 1YP4_D 1YP3_B 1H5S_D 1H5R_C 1H5T_C 2E3D_B 1JYL_C 1JYK_A 1MP5_C ....
Probab=99.19 E-value=1.3e-10 Score=109.14 Aligned_cols=184 Identities=16% Similarity=0.251 Sum_probs=128.3
Q ss_pred EEEecCCCccccC---CCCCCccccccCCCCC-ccHHHHHHHHHHHHHHHHhhhcCCCCCCCCceeEEEEcCCCchHHHH
Q 016922 122 VLLLSGGQGTRLG---SSDPKGCVNIGLPSGK-SLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATR 197 (380)
Q Consensus 122 vvlLAGG~GTRLg---~~~PKg~~~i~l~s~k-sllq~~~e~i~~l~~la~~~~~~~~~~~~~~ip~~IMTS~~t~e~t~ 197 (380)
+||||||.||||. .+.||+|+|+ .++ |++++.++++.. .+.. -.++.+..+..+.+.
T Consensus 2 avIla~G~GtRl~plt~~~pK~ll~i---~g~~pli~~~l~~l~~---------------~g~~-~ii~V~~~~~~~~i~ 62 (248)
T PF00483_consen 2 AVILAGGKGTRLRPLTDTIPKPLLPI---GGKYPLIDYVLENLAN---------------AGIK-EIIVVVNGYKEEQIE 62 (248)
T ss_dssp EEEEEESCCGGGTTTTTTSSGGGSEE---TTEEEHHHHHHHHHHH---------------TTCS-EEEEEEETTTHHHHH
T ss_pred EEEECCCCCccCchhhhcccccccee---cCCCcchhhhhhhhcc---------------cCCc-eEEEEEeeccccccc
Confidence 5788999999997 6789999999 788 999999998874 1322 236777778889999
Q ss_pred HHHhhcCCCCCCCCceEEEEeCCeeeEecCCcccccCCCccccccCCCchhhHHHhhCChHHHHHHCC-CeEEEEEcCCC
Q 016922 198 KYFEGHKYFGLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRG-IKYIDCYGVDN 276 (380)
Q Consensus 198 ~~f~~~~~FGl~~~~V~~f~Q~~~P~~~~~gki~l~~~~~i~~~P~GnGgi~~aL~~~g~l~~l~~~G-i~yi~v~~vDN 276 (380)
+++++...+++ +|.+.. ...|.|+|+....+. +.+.... -+++.|.++|+
T Consensus 63 ~~~~~~~~~~~---~i~~i~---------------------~~~~~Gta~al~~a~-----~~i~~~~~~~~~lv~~gD~ 113 (248)
T PF00483_consen 63 EHLGSGYKFGV---KIEYIV---------------------QPEPLGTAGALLQAL-----DFIEEEDDDEDFLVLNGDI 113 (248)
T ss_dssp HHHTTSGGGTE---EEEEEE---------------------ESSSSCHHHHHHHTH-----HHHTTSEE-SEEEEETTEE
T ss_pred ccccccccccc---cceeee---------------------cccccchhHHHHHHH-----HHhhhccccceEEEEeccc
Confidence 99998766664 344443 344568888887553 3332222 24689999999
Q ss_pred cccccCCHHHHHHHHHhCCce--EEEEeecCCCCcccceEEEEcCCCCeEEEEecccChhhhhhhccCCCcceecccccc
Q 016922 277 ALVRVADPTFLGYFIDKGVSA--GAKVVRKAYPQEKVGVFVRRGKGGPLTVVEYSELDPSLASAINQETGRLRFCWSNVC 354 (380)
Q Consensus 277 ~L~~~~Dp~~lG~~~~~~~d~--~~kvv~k~~p~e~vGvl~~~~~~g~~~vvEYsel~~~~~~~~~~~~g~l~f~~gNi~ 354 (380)
+. ...-..++-.|...+.++ .+..++.. ..++.|++... .+| .|+++-|-|..... .+..|++
T Consensus 114 i~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~g~v~~d-~~~--~V~~~~EKP~~~~~----------~~~~~~G 178 (248)
T PF00483_consen 114 IF-DDDLQDMLEFHRESNADGTVTLLVVPVE-DPSRYGVVEVD-EDG--RVIRIVEKPDNPNA----------SNLINTG 178 (248)
T ss_dssp EE-STTHHHHHHHHHHHSSCESEEEEEEESS-GGGGSEEEEEE-TTS--EEEEEEESCSSHSH----------SSEEEEE
T ss_pred cc-cchhhhHHHhhhcccccccccccccccc-ccccceeeeec-cce--eEEEEeccCccccc----------ceeccCc
Confidence 85 443355888888888854 44455544 35788988775 345 78888877653210 1246888
Q ss_pred chhccHHHHHHHHh
Q 016922 355 LHMFTLDFLNQVAN 368 (380)
Q Consensus 355 ~~~f~l~fL~~~~~ 368 (380)
+++|+.+++..+++
T Consensus 179 ~Y~~~~~~~~~~~~ 192 (248)
T PF00483_consen 179 IYIFKPEIFDFLLE 192 (248)
T ss_dssp EEEEETHHHHHHHH
T ss_pred eEEEcchHHHHHhh
Confidence 88999998888854
No 23
>PRK10122 GalU regulator GalF; Provisional
Probab=99.17 E-value=6.8e-10 Score=108.74 Aligned_cols=189 Identities=15% Similarity=0.186 Sum_probs=120.6
Q ss_pred CEEEEEecCCCccccC---CCCCCccccccCCCCCccHHHHHHHHHHHHHHHHhhhcCCCCCCCCceeEEEEcCCCchHH
Q 016922 119 KLAVLLLSGGQGTRLG---SSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDA 195 (380)
Q Consensus 119 kvavvlLAGG~GTRLg---~~~PKg~~~i~l~s~ksllq~~~e~i~~l~~la~~~~~~~~~~~~~~ip~~IMTS~~t~e~ 195 (380)
++.+||+|||.||||. ...||.|+|| .+|+++++.++.+.. .+ |.-+++...+..+.
T Consensus 3 ~mkavIlAaG~GtRl~PlT~~~PK~llpi---~gkpiI~~~l~~l~~---------------~G--i~~i~iv~~~~~~~ 62 (297)
T PRK10122 3 NLKAVIPVAGLGMHMLPATKAIPKEMLPI---VDKPMIQYIVDEIVA---------------AG--IKEIVLVTHASKNA 62 (297)
T ss_pred ceEEEEECCcCCcccCcccCCCCceeeEE---CCEEHHHHHHHHHHH---------------CC--CCEEEEEcCCChHH
Confidence 6889999999999998 5779999999 789999999998764 23 44455556789999
Q ss_pred HHHHHhhcCCCCCC--------------------C-CceEEEEeCCeeeEecCCcccccCCCccccccCCCchhhHHHhh
Q 016922 196 TRKYFEGHKYFGLE--------------------S-DQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKS 254 (380)
Q Consensus 196 t~~~f~~~~~FGl~--------------------~-~~V~~f~Q~~~P~~~~~gki~l~~~~~i~~~P~GnGgi~~aL~~ 254 (380)
+.+||.. .++++ . -++.+. ....|.|+||.+.....
T Consensus 63 i~~~~~~--~~~l~~~~~~~~k~~~l~~~~~~~~~~~~i~~~---------------------~q~~~lGtg~al~~a~~ 119 (297)
T PRK10122 63 VENHFDT--SYELESLLEQRVKRQLLAEVQSICPPGVTIMNV---------------------RQGQPLGLGHSILCARP 119 (297)
T ss_pred HHHHHhc--chhHHHHHhhcchhhhHHhhhhccCCCceEEEe---------------------ecCCcCchHHHHHHHHH
Confidence 9999963 22221 0 012221 23468999998775533
Q ss_pred CChHHHHHHCCCeEEEEEcCCCccccc--------CCHHHHHHHHHhCCceEEEEeecCCCCcccceEEEEc---CCCCe
Q 016922 255 SKLLEDMATRGIKYIDCYGVDNALVRV--------ADPTFLGYFIDKGVSAGAKVVRKAYPQEKVGVFVRRG---KGGPL 323 (380)
Q Consensus 255 ~g~l~~l~~~Gi~yi~v~~vDN~L~~~--------~Dp~~lG~~~~~~~d~~~kvv~k~~p~e~vGvl~~~~---~~g~~ 323 (380)
.+ .+-+++ |.+.|+++ .. .--.++-+|.+.++++.+-...... ..++|++...+ .+|..
T Consensus 120 -----~l--~~~~fv-vi~gD~l~-~~~~~~~~~~dl~~li~~h~~~~~~~~~~~~~~~~-~~~yGvv~~d~~~~~~g~v 189 (297)
T PRK10122 120 -----AI--GDNPFV-VVLPDVVI-DDASADPLRYNLAAMIARFNETGRSQVLAKRMPGD-LSEYSVIQTKEPLDREGKV 189 (297)
T ss_pred -----Hc--CCCCEE-EEECCeec-cCccccccchhHHHHHHHHHHhCCcEEEEEECCCC-CCCceEEEecCcccCCCCe
Confidence 22 123455 55699864 21 1123666777777775433322233 46789887631 24543
Q ss_pred -EEEEecccChhhhhhhccCCCcceeccccccchhccHHHHHHHHh
Q 016922 324 -TVVEYSELDPSLASAINQETGRLRFCWSNVCLHMFTLDFLNQVAN 368 (380)
Q Consensus 324 -~vvEYsel~~~~~~~~~~~~g~l~f~~gNi~~~~f~l~fL~~~~~ 368 (380)
+|+++.|-|..-... .+ +..|+++++|+.+.++.+.+
T Consensus 190 ~~I~~~~EKp~~~~~~------~s--~~~~~GiYi~~~~i~~~l~~ 227 (297)
T PRK10122 190 SRIVEFIEKPDQPQTL------DS--DLMAVGRYVLSADIWPELER 227 (297)
T ss_pred eeEEEEEECCCCcccC------Cc--cEEEEEEEEECHHHHHHHHh
Confidence 678888765421100 01 24789999999998887754
No 24
>cd04197 eIF-2B_epsilon_N The N-terminal domain of epsilon subunit of the eIF-2B is a subfamily of glycosyltransferase 2. N-terminal domain of epsilon subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.
Probab=99.16 E-value=6.3e-10 Score=103.42 Aligned_cols=160 Identities=15% Similarity=0.181 Sum_probs=103.4
Q ss_pred EEEEecCCCccccC---CCCCCccccccCCCCCccHHHHHHHHHHHHHHHHhhhcCCCCCCCCcee-EEEEcCCCchHHH
Q 016922 121 AVLLLSGGQGTRLG---SSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIH-WYIMTSPFTDDAT 196 (380)
Q Consensus 121 avvlLAGG~GTRLg---~~~PKg~~~i~l~s~ksllq~~~e~i~~l~~la~~~~~~~~~~~~~~ip-~~IMTS~~t~e~t 196 (380)
-+|+||||.||||+ ...||+|+|| .|++++++.++.+.+ .+ |. .+|.|. +..+.+
T Consensus 2 ~aiIla~G~g~Rl~plt~~~pK~llpi---~g~piI~~~l~~l~~---------------~G--i~~I~iv~~-~~~~~i 60 (217)
T cd04197 2 QAVVLADSFNRRFRPLTKEKPRCLLPL---ANVPLIDYTLEFLAL---------------NG--VEEVFVFCC-SHSDQI 60 (217)
T ss_pred eEEEEcCCCcccccccccCCCceeeEE---CCEehHHHHHHHHHH---------------CC--CCeEEEEeC-CCHHHH
Confidence 36999999999998 5789999999 799999999988764 23 33 345554 688999
Q ss_pred HHHHhhcCCCCCCCC--ceEEEEeCCeeeEecCCcccccCCCccccccCCCchhhHHHhhCChHHHHHHCCCeEEEEEcC
Q 016922 197 RKYFEGHKYFGLESD--QVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGV 274 (380)
Q Consensus 197 ~~~f~~~~~FGl~~~--~V~~f~Q~~~P~~~~~gki~l~~~~~i~~~P~GnGgi~~aL~~~g~l~~l~~~Gi~yi~v~~v 274 (380)
++||++...+++... .+.+.. ...+.|.|+.++.+...+.+ .+.+.+.+.
T Consensus 61 ~~~l~~~~~~~~~~~~~~i~~~~---------------------~~~~~~~~~al~~~~~~~~~-------~~~flv~~g 112 (217)
T cd04197 61 KEYIEKSKWSKPKSSLMIVIIIM---------------------SEDCRSLGDALRDLDAKGLI-------RGDFILVSG 112 (217)
T ss_pred HHHHhhccccccccCcceEEEEe---------------------CCCcCccchHHHHHhhcccc-------CCCEEEEeC
Confidence 999998666654321 122211 12367888888766443322 245668899
Q ss_pred CCcccccCCH-HHHHHHHH-----hCCceEEEEeecCCCCc-----ccceEEEEcCCCCeEEEEecccCh
Q 016922 275 DNALVRVADP-TFLGYFID-----KGVSAGAKVVRKAYPQE-----KVGVFVRRGKGGPLTVVEYSELDP 333 (380)
Q Consensus 275 DN~L~~~~Dp-~~lG~~~~-----~~~d~~~kvv~k~~p~e-----~vGvl~~~~~~g~~~vvEYsel~~ 333 (380)
|++. . .|. .++.+|.+ +++++++-+.+...+.. ..|++...+++| +|+.+.|-|.
T Consensus 113 D~i~-~-~dl~~~l~~h~~~~~~~~~a~~t~~~~~~~~~~~~~~~~~~~vv~~d~~~~--~v~~~~ekp~ 178 (217)
T cd04197 113 DVVS-N-IDLKEILEEHKERRKKDKNAIMTMVLKEASPPHRTRRTGEEFVIAVDPKTS--RLLHYEELPG 178 (217)
T ss_pred Ceee-c-cCHHHHHHHHHHhhccccCceEEEEEEeCCCccccccCCCceEEEEcCCCC--cEEEEecccC
Confidence 9985 3 343 47788876 37777765544433321 246665542224 5667666554
No 25
>cd06422 NTP_transferase_like_1 NTP_transferase_like_1 is a member of the nucleotidyl transferase family. This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase.
Probab=99.14 E-value=9.9e-10 Score=101.83 Aligned_cols=176 Identities=16% Similarity=0.198 Sum_probs=115.9
Q ss_pred EEEecCCCccccCC---CCCCccccccCCCCCccHHHHHHHHHHHHHHHHhhhcCCCCCCCCceeEEEEcCCCchHHHHH
Q 016922 122 VLLLSGGQGTRLGS---SDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRK 198 (380)
Q Consensus 122 vvlLAGG~GTRLg~---~~PKg~~~i~l~s~ksllq~~~e~i~~l~~la~~~~~~~~~~~~~~ip~~IMTS~~t~e~t~~ 198 (380)
+|+||||.||||+. +.||+|.|+ .|++++++.++.+.+ .+ |.-+++..++..+.+.+
T Consensus 2 aiIlaaG~g~Rl~plt~~~pK~llpi---~g~~li~~~l~~l~~---------------~g--i~~i~iv~~~~~~~i~~ 61 (221)
T cd06422 2 AMILAAGLGTRMRPLTDTRPKPLVPV---AGKPLIDHALDRLAA---------------AG--IRRIVVNTHHLADQIEA 61 (221)
T ss_pred EEEEcCCCCCccccccCCCCCceeeE---CCEEHHHHHHHHHHH---------------CC--CCEEEEEccCCHHHHHH
Confidence 58999999999973 689999999 799999999998774 23 55567777889999999
Q ss_pred HHhhcCCCCCCCCceEEEEeCCeeeEecCCcccccCCCccccccCCCchhhHHHhhCChHHHHHHCCCeEEEEEcCCCcc
Q 016922 199 YFEGHKYFGLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGVDNAL 278 (380)
Q Consensus 199 ~f~~~~~FGl~~~~V~~f~Q~~~P~~~~~gki~l~~~~~i~~~P~GnGgi~~aL~~~g~l~~l~~~Gi~yi~v~~vDN~L 278 (380)
++.+ .++|+. |.+..| ...+.|+|+.+.... +.+ +-++++|.+.|++.
T Consensus 62 ~~~~-~~~~~~---i~~~~~--------------------~~~~~g~~~~l~~~~-----~~~---~~~~~lv~~~D~i~ 109 (221)
T cd06422 62 HLGD-SRFGLR---ITISDE--------------------PDELLETGGGIKKAL-----PLL---GDEPFLVVNGDILW 109 (221)
T ss_pred HHhc-ccCCce---EEEecC--------------------CCcccccHHHHHHHH-----Hhc---CCCCEEEEeCCeee
Confidence 9987 556642 222210 014678877655432 222 12688999999985
Q ss_pred cccCCHHHHHHHH--HhCCceEEEEeecCCCCcccceEEEEcCCCCeEEEEecccChhhhhhhccCCCcceeccccccch
Q 016922 279 VRVADPTFLGYFI--DKGVSAGAKVVRKAYPQEKVGVFVRRGKGGPLTVVEYSELDPSLASAINQETGRLRFCWSNVCLH 356 (380)
Q Consensus 279 ~~~~Dp~~lG~~~--~~~~d~~~kvv~k~~p~e~vGvl~~~~~~g~~~vvEYsel~~~~~~~~~~~~g~l~f~~gNi~~~ 356 (380)
...--.++-.|. ..++++++.+++...+ +..|++... .+| .|.++.+-++. +..|++++
T Consensus 110 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~v~~d-~~~--~v~~~~~~~~~--------------~~~~~Giy 170 (221)
T cd06422 110 -DGDLAPLLLLHAWRMDALLLLLPLVRNPGH-NGVGDFSLD-ADG--RLRRGGGGAVA--------------PFTFTGIQ 170 (221)
T ss_pred -CCCHHHHHHHHHhccCCCceEEEEEEcCCC-CCcceEEEC-CCC--cEeecccCCCC--------------ceEEEEEE
Confidence 333233555555 3566666666555443 566887654 345 46666543220 23577888
Q ss_pred hccHHHHHHHHh
Q 016922 357 MFTLDFLNQVAN 368 (380)
Q Consensus 357 ~f~l~fL~~~~~ 368 (380)
+|+.+++.++.+
T Consensus 171 i~~~~~l~~l~~ 182 (221)
T cd06422 171 ILSPELFAGIPP 182 (221)
T ss_pred EEcHHHHhhCCc
Confidence 888888877643
No 26
>cd06428 M1P_guanylylT_A_like_N N-terminal domain of M1P_guanylyl_A_ like proteins are likely to be a isoform of GDP-mannose pyrophosphorylase. N-terminal domain of the M1P-guanylyltransferase A-isoform like proteins: The proteins of this family are likely to be a isoform of GDP-mannose pyrophosphorylase. Their sequences are highly conserved with mannose-1-phosphate guanyltransferase, but generally about 40-60 bases longer. GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repre
Probab=99.13 E-value=1.5e-09 Score=103.40 Aligned_cols=185 Identities=16% Similarity=0.278 Sum_probs=121.6
Q ss_pred EEEecCC--CccccCC---CCCCccccccCCCCCccHHHHHHHHHHHHHHHHhhhcCCCCCCCCceeEEEEcCCCchHHH
Q 016922 122 VLLLSGG--QGTRLGS---SDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDAT 196 (380)
Q Consensus 122 vvlLAGG--~GTRLg~---~~PKg~~~i~l~s~ksllq~~~e~i~~l~~la~~~~~~~~~~~~~~ip~~IMTS~~t~e~t 196 (380)
+|||||| .||||.. ..||+|+|| .|++++++.++.+..+ .+ +.-+++...+..+.+
T Consensus 1 ~iIla~G~~~GtRl~plt~~~PK~llpv---~g~plI~~~l~~l~~~--------------~g--i~~i~iv~~~~~~~i 61 (257)
T cd06428 1 AVILVGGPQKGTRFRPLSLDVPKPLFPV---AGKPMIHHHIEACAKV--------------PD--LKEVLLIGFYPESVF 61 (257)
T ss_pred CEEEccCCCCCcccCCccCCCCcccCeE---CCeeHHHHHHHHHHhc--------------CC--CcEEEEEecCCHHHH
Confidence 4788999 8999984 789999999 8999999988876631 12 445566667788999
Q ss_pred HHHHhhcC-CCCCCCCceEEEEeCCeeeEecCCcccccCCCccccccCCCchhhHHHhhCChHHHHHHCCCeEEEEEcCC
Q 016922 197 RKYFEGHK-YFGLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGVD 275 (380)
Q Consensus 197 ~~~f~~~~-~FGl~~~~V~~f~Q~~~P~~~~~gki~l~~~~~i~~~P~GnGgi~~aL~~~g~l~~l~~~Gi~yi~v~~vD 275 (380)
.+|+.+.. .+|+ .|.+.. ...|.|+|+...... +.+....-++++|.+.|
T Consensus 62 ~~~l~~~~~~~~~---~i~~~~---------------------~~~~~Gt~~al~~a~-----~~l~~~~~~~~lv~~gD 112 (257)
T cd06428 62 SDFISDAQQEFNV---PIRYLQ---------------------EYKPLGTAGGLYHFR-----DQILAGNPSAFFVLNAD 112 (257)
T ss_pred HHHHHhcccccCc---eEEEec---------------------CCccCCcHHHHHHHH-----HHhhccCCCCEEEEcCC
Confidence 99998642 2343 222221 234789998876543 22322224678899999
Q ss_pred CcccccCCHHHHHHHHHhCCceEEEEeecC-CCCcccceEEEEcCCCCeEEEEecccChhhhhhhccCCCcceecccccc
Q 016922 276 NALVRVADPTFLGYFIDKGVSAGAKVVRKA-YPQEKVGVFVRRGKGGPLTVVEYSELDPSLASAINQETGRLRFCWSNVC 354 (380)
Q Consensus 276 N~L~~~~Dp~~lG~~~~~~~d~~~kvv~k~-~p~e~vGvl~~~~~~g~~~vvEYsel~~~~~~~~~~~~g~l~f~~gNi~ 354 (380)
++. ...--.++.+|.++++++++-+.+.. ....+.|++.....+| .|.++.|-|... .. +..|++
T Consensus 113 ~~~-~~dl~~~~~~h~~~~~~~tl~~~~~~~~~~~~yg~v~~d~~~g--~v~~~~Ekp~~~---------~~--~~~~~G 178 (257)
T cd06428 113 VCC-DFPLQELLEFHKKHGASGTILGTEASREQASNYGCIVEDPSTG--EVLHYVEKPETF---------VS--DLINCG 178 (257)
T ss_pred eec-CCCHHHHHHHHHHcCCCEEEEEEEccccccccccEEEEeCCCC--eEEEEEeCCCCc---------cc--ceEEEE
Confidence 984 43334578888888888876554431 1235678876531245 566776654311 01 246899
Q ss_pred chhccHHHHHHHHh
Q 016922 355 LHMFTLDFLNQVAN 368 (380)
Q Consensus 355 ~~~f~l~fL~~~~~ 368 (380)
+++|+.++++.+.+
T Consensus 179 iyi~~~~~~~~i~~ 192 (257)
T cd06428 179 VYLFSPEIFDTIKK 192 (257)
T ss_pred EEEECHHHHHHHhh
Confidence 99999999876653
No 27
>KOG1322 consensus GDP-mannose pyrophosphorylase/mannose-1-phosphate guanylyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=99.10 E-value=1.7e-09 Score=105.40 Aligned_cols=187 Identities=20% Similarity=0.275 Sum_probs=136.9
Q ss_pred CCEEEEEecCCCccccC---CCCCCccccccCCCCCccHHHHHHHHHHHHHHHHhhhcCCCCCCCCceeEEEEcCCCchH
Q 016922 118 GKLAVLLLSGGQGTRLG---SSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDD 194 (380)
Q Consensus 118 gkvavvlLAGG~GTRLg---~~~PKg~~~i~l~s~ksllq~~~e~i~~l~~la~~~~~~~~~~~~~~ip~~IMTS~~t~e 194 (380)
..|++++|.||.||||. ...||+..|++ .|+++.++++.+.. .++. ..++.|+..-..
T Consensus 8 ~~vkaiILvGG~GTRLrPLT~t~pKPlVpfg---n~pmI~hqieal~n---------------sGi~-~I~la~~y~s~s 68 (371)
T KOG1322|consen 8 QSVKAIILVGGYGTRLRPLTLTRPKPLVPFG---NKPMILHQIEALIN---------------SGIT-KIVLATQYNSES 68 (371)
T ss_pred cceeEEEEecCCCceeeceeccCCCcccccC---cchhhHHHHHHHHh---------------CCCc-EEEEEEecCcHH
Confidence 37999999999999997 78899999985 89999999987763 2322 345555554444
Q ss_pred HHHHHHhhc-CCCCCCCCceEEEEeCCeeeEecCCcccccCCCccccccCCCchhhHHHhhCChHHHHHHCCCeEEEEEc
Q 016922 195 ATRKYFEGH-KYFGLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYG 273 (380)
Q Consensus 195 ~t~~~f~~~-~~FGl~~~~V~~f~Q~~~P~~~~~gki~l~~~~~i~~~P~GnGgi~~aL~~~g~l~~l~~~Gi~yi~v~~ 273 (380)
..+.+.+.+ ..||+ .|.+-. ++.|.|.-|-..+.++. |.... +- -++|.|
T Consensus 69 l~~~~~k~y~~~lgV---ei~~s~---------------------eteplgtaGpl~laR~~--L~~~~--~~-~ffVLn 119 (371)
T KOG1322|consen 69 LNRHLSKAYGKELGV---EILAST---------------------ETEPLGTAGPLALARDF--LWVFE--DA-PFFVLN 119 (371)
T ss_pred HHHHHHHHhhhccce---EEEEEe---------------------ccCCCcccchHHHHHHH--hhhcC--CC-cEEEec
Confidence 555555553 34553 233322 34499999999887653 32221 22 478889
Q ss_pred CCCcccccCCHHHHHHHHHhCCceEEEEeecCCCCcccceEEEEcCCCCeEEEEecccChhhhhhhccCCCcceeccccc
Q 016922 274 VDNALVRVADPTFLGYFIDKGVSAGAKVVRKAYPQEKVGVFVRRGKGGPLTVVEYSELDPSLASAINQETGRLRFCWSNV 353 (380)
Q Consensus 274 vDN~L~~~~Dp~~lG~~~~~~~d~~~kvv~k~~p~e~vGvl~~~~~~g~~~vvEYsel~~~~~~~~~~~~g~l~f~~gNi 353 (380)
.|-+ ++..--.|+.+|.+.++|.++.|++...| .++|++......| +|..++|-|+++.. +.-|.
T Consensus 120 sDvi-~~~p~~~~vqfH~~~gae~TI~~t~vdep-SkyGvv~~d~~~g--rV~~F~EKPkd~vs-----------nkina 184 (371)
T KOG1322|consen 120 SDVI-CRMPYKEMVQFHRAHGAEITIVVTKVDEP-SKYGVVVIDEDTG--RVIRFVEKPKDLVS-----------NKINA 184 (371)
T ss_pred CCee-ecCCHHHHHHHHHhcCCceEEEEEeccCc-cccceEEEecCCC--ceeEehhCchhhhh-----------ccccc
Confidence 9997 57777789999999999999998887765 8999998762234 79999999996542 23578
Q ss_pred cchhccHHHHHHHH
Q 016922 354 CLHMFTLDFLNQVA 367 (380)
Q Consensus 354 ~~~~f~l~fL~~~~ 367 (380)
++++|+.+.|.++.
T Consensus 185 GiYi~~~~vL~ri~ 198 (371)
T KOG1322|consen 185 GIYILNPEVLDRIL 198 (371)
T ss_pred eEEEECHHHHhHhh
Confidence 99999999999886
No 28
>cd06915 NTP_transferase_WcbM_like WcbM_like is a subfamily of nucleotidyl transferases. WcbM protein of Burkholderia mallei is involved in the biosynthesis, export or translocation of capsule. It is a subfamily of nucleotidyl transferases that transfer nucleotides onto phosphosugars.
Probab=99.08 E-value=2.8e-09 Score=97.92 Aligned_cols=178 Identities=19% Similarity=0.279 Sum_probs=114.0
Q ss_pred EEEecCCCccccCC---CCCCccccccCCCCCccHHHHHHHHHHHHHHHHhhhcCCCCCCCCceeEEEEcCCCchHHHHH
Q 016922 122 VLLLSGGQGTRLGS---SDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRK 198 (380)
Q Consensus 122 vvlLAGG~GTRLg~---~~PKg~~~i~l~s~ksllq~~~e~i~~l~~la~~~~~~~~~~~~~~ip~~IMTS~~t~e~t~~ 198 (380)
+|+||||.||||+. ..||.++|+ .|+|++++.++.+.+ .+ +.-++++.++..+.+.+
T Consensus 1 aiIlaaG~g~R~~~~t~~~pK~ll~i---~g~pli~~~l~~l~~---------------~g--~~~v~vv~~~~~~~i~~ 60 (223)
T cd06915 1 AVILAGGLGTRLRSVVKDLPKPLAPV---AGRPFLEYLLEYLAR---------------QG--ISRIVLSVGYLAEQIEE 60 (223)
T ss_pred CEEecCCcccccCcccCCCCccccEE---CCcchHHHHHHHHHH---------------CC--CCEEEEEcccCHHHHHH
Confidence 48999999999974 579999999 789999999988764 13 44456666777889999
Q ss_pred HHhhcCCCCCCCCceEEEEeCCeeeEecCCcccccCCCccccccCCCchhhHHHhhCChHHHHHHCCCeEEEEEcCCCcc
Q 016922 199 YFEGHKYFGLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGVDNAL 278 (380)
Q Consensus 199 ~f~~~~~FGl~~~~V~~f~Q~~~P~~~~~gki~l~~~~~i~~~P~GnGgi~~aL~~~g~l~~l~~~Gi~yi~v~~vDN~L 278 (380)
++.+...+|. .+.+.. ...+.|+++.+.... +.+ +-+++.+.+.|+++
T Consensus 61 ~~~~~~~~~~---~~~~~~---------------------~~~~~G~~~~l~~a~-----~~~---~~~~~lv~~~D~~~ 108 (223)
T cd06915 61 YFGDGYRGGI---RIYYVI---------------------EPEPLGTGGAIKNAL-----PKL---PEDQFLVLNGDTYF 108 (223)
T ss_pred HHcCccccCc---eEEEEE---------------------CCCCCcchHHHHHHH-----hhc---CCCCEEEEECCccc
Confidence 9975332333 122211 134678876544322 222 23678888999976
Q ss_pred cccCCHHHHHHHHHhCCceEEEEeecCCCCcccceEEEEcCCCCeEEEEecccChhhhhhhccCCCcceeccccccchhc
Q 016922 279 VRVADPTFLGYFIDKGVSAGAKVVRKAYPQEKVGVFVRRGKGGPLTVVEYSELDPSLASAINQETGRLRFCWSNVCLHMF 358 (380)
Q Consensus 279 ~~~~Dp~~lG~~~~~~~d~~~kvv~k~~p~e~vGvl~~~~~~g~~~vvEYsel~~~~~~~~~~~~g~l~f~~gNi~~~~f 358 (380)
. ..--.++-.+.+.+.++++.+.+...+ ...|.+.. +.+| .|+++.+-+... . ....|+++++|
T Consensus 109 ~-~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~v~~-d~~~--~v~~~~ek~~~~---------~--~~~~~~Giy~~ 172 (223)
T cd06915 109 D-VDLLALLAALRASGADATMALRRVPDA-SRYGNVTV-DGDG--RVIAFVEKGPGA---------A--PGLINGGVYLL 172 (223)
T ss_pred C-CCHHHHHHHHHhCCCcEEEEEEECCCC-CcceeEEE-CCCC--eEEEEEeCCCCC---------C--CCcEEEEEEEE
Confidence 3 222234555556778888777665443 56677644 2344 566776643311 0 12357888999
Q ss_pred cHHHHHHHH
Q 016922 359 TLDFLNQVA 367 (380)
Q Consensus 359 ~l~fL~~~~ 367 (380)
+.++++++.
T Consensus 173 ~~~~l~~~~ 181 (223)
T cd06915 173 RKEILAEIP 181 (223)
T ss_pred CHHHHhhCC
Confidence 999998764
No 29
>cd04189 G1P_TT_long G1P_TT_long represents the long form of glucose-1-phosphate thymidylyltransferase. This family is the long form of Glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced.The long from enzymes also have a left-handed parallel helix domain at the c-terminus, whereas, th eshort form enzymes do not have this domain. The homotetrameric, feedback inhibited short form is found in
Probab=99.08 E-value=3e-09 Score=99.35 Aligned_cols=178 Identities=22% Similarity=0.341 Sum_probs=115.4
Q ss_pred EEEEEecCCCccccC---CCCCCccccccCCCCCccHHHHHHHHHHHHHHHHhhhcCCCCCCCCceeEEEEcCCCchHHH
Q 016922 120 LAVLLLSGGQGTRLG---SSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDAT 196 (380)
Q Consensus 120 vavvlLAGG~GTRLg---~~~PKg~~~i~l~s~ksllq~~~e~i~~l~~la~~~~~~~~~~~~~~ip~~IMTS~~t~e~t 196 (380)
+.+|+||||.||||+ ...||+++|| .|++++++.++.+.+ .++. ..+|.|+. ..+.+
T Consensus 1 m~avIlAaG~g~Rl~plt~~~pK~l~~i---~g~~li~~~l~~l~~---------------~~~~-~i~vv~~~-~~~~~ 60 (236)
T cd04189 1 MKGLILAGGKGTRLRPLTYTRPKQLIPV---AGKPIIQYAIEDLRE---------------AGIE-DIGIVVGP-TGEEI 60 (236)
T ss_pred CeEEEECCCccccccccccCCCceeeEE---CCcchHHHHHHHHHH---------------CCCC-EEEEEcCC-CHHHH
Confidence 468999999999997 5789999999 799999999888763 1211 34555554 88899
Q ss_pred HHHHhhcCCCCCCCCceEEEEeCCeeeEecCCcccccCCCccccccCCCchhhHHHhhCChHHHHHHCCCeEEEEEcCCC
Q 016922 197 RKYFEGHKYFGLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGVDN 276 (380)
Q Consensus 197 ~~~f~~~~~FGl~~~~V~~f~Q~~~P~~~~~gki~l~~~~~i~~~P~GnGgi~~aL~~~g~l~~l~~~Gi~yi~v~~vDN 276 (380)
.+++++...++++ +.+..| ..|.|+|+.+..... .+. +-++ .+.+.|.
T Consensus 61 ~~~~~~~~~~~~~---i~~~~~---------------------~~~~g~~~sl~~a~~-----~i~--~~~~-li~~~D~ 108 (236)
T cd04189 61 KEALGDGSRFGVR---ITYILQ---------------------EEPLGLAHAVLAARD-----FLG--DEPF-VVYLGDN 108 (236)
T ss_pred HHHhcchhhcCCe---EEEEEC---------------------CCCCChHHHHHHHHH-----hcC--CCCE-EEEECCe
Confidence 9999876556653 333221 236788776654322 221 2344 5567898
Q ss_pred cccccCCHHHHHHHHHhCCceEEEEeecCCCCcccceEEEEcCCCCeEEEEecccChhhhhhhccCCCcceeccccccch
Q 016922 277 ALVRVADPTFLGYFIDKGVSAGAKVVRKAYPQEKVGVFVRRGKGGPLTVVEYSELDPSLASAINQETGRLRFCWSNVCLH 356 (380)
Q Consensus 277 ~L~~~~Dp~~lG~~~~~~~d~~~kvv~k~~p~e~vGvl~~~~~~g~~~vvEYsel~~~~~~~~~~~~g~l~f~~gNi~~~ 356 (380)
++ ...--.++-.+...++++++.+.+..++ .+.|++... +| .|.++.|-|.. + . . ...|++++
T Consensus 109 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~d--~~--~v~~~~ek~~~------~-~--~--~~~~~Giy 171 (236)
T cd04189 109 LI-QEGISPLVRDFLEEDADASILLAEVEDP-RRFGVAVVD--DG--RIVRLVEKPKE------P-P--S--NLALVGVY 171 (236)
T ss_pred ec-CcCHHHHHHHHHhcCCceEEEEEECCCc-ccceEEEEc--CC--eEEEEEECCCC------C-C--C--CEEEEEEE
Confidence 75 3332335556677788887777665544 566876543 44 67777665421 0 0 1 23588889
Q ss_pred hccHHHHHHH
Q 016922 357 MFTLDFLNQV 366 (380)
Q Consensus 357 ~f~l~fL~~~ 366 (380)
+|+.++++.+
T Consensus 172 ~~~~~~~~~l 181 (236)
T cd04189 172 AFTPAIFDAI 181 (236)
T ss_pred EeCHHHHHHH
Confidence 9998888765
No 30
>PRK00725 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=99.08 E-value=3.5e-09 Score=108.56 Aligned_cols=200 Identities=13% Similarity=0.223 Sum_probs=127.4
Q ss_pred CEEEEEecCCCccccCC---CCCCccccccCCCCCc-cHHHHHHHHHHHHHHHHhhhcCCCCCCCCceeEEEEcCCCchH
Q 016922 119 KLAVLLLSGGQGTRLGS---SDPKGCVNIGLPSGKS-LFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDD 194 (380)
Q Consensus 119 kvavvlLAGG~GTRLg~---~~PKg~~~i~l~s~ks-llq~~~e~i~~l~~la~~~~~~~~~~~~~~ip~~IMTS~~t~e 194 (380)
++.+||||||.||||.. +.||.|+|+ .|++ ++++.++.+.+ .+ |.-+++...+..+
T Consensus 15 ~~~aVILAaG~GtRl~pLT~~~PK~llpv---~gkp~lI~~~l~~l~~---------------~G--i~~i~vv~~~~~~ 74 (425)
T PRK00725 15 DTLALILAGGRGSRLKELTDKRAKPAVYF---GGKFRIIDFALSNCIN---------------SG--IRRIGVLTQYKAH 74 (425)
T ss_pred ceEEEEECCCCCCcchhhhCCCcceeEEE---CCEEEEhHHHHHHHHH---------------CC--CCeEEEEecCCHH
Confidence 79999999999999984 789999999 8896 99999998764 23 4345555568899
Q ss_pred HHHHHHhhcCCCCCCCC----ceEEEEeCCeeeEecCCcccccCCCccccccCCCchhhHHHhhCChHHHHHHCCCeEEE
Q 016922 195 ATRKYFEGHKYFGLESD----QVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYID 270 (380)
Q Consensus 195 ~t~~~f~~~~~FGl~~~----~V~~f~Q~~~P~~~~~gki~l~~~~~i~~~P~GnGgi~~aL~~~g~l~~l~~~Gi~yi~ 270 (380)
.+.++|.+. +++... .+.++.+ .........|.|+|+.+.... +.+....-++++
T Consensus 75 ~i~~~~~~~--~~~~~~~~~~~i~i~~~--------------~~~~~~e~~~lGTa~al~~a~-----~~l~~~~~d~~l 133 (425)
T PRK00725 75 SLIRHIQRG--WSFFREELGEFVDLLPA--------------QQRVDEENWYRGTADAVYQNL-----DIIRRYDPKYVV 133 (425)
T ss_pred HHHHHHHhh--hcccccCCCCeEEEeCC--------------cccCCCCccccCcHHHHHHHH-----HHHHhcCCCEEE
Confidence 999999752 333211 1111110 001112345899999877543 334333346889
Q ss_pred EEcCCCcccccCCHHHHHHHHHhCCceEEEEeec--CCCCcccceEEEEcCCCCeEEEEecccChhhhhhhccCCCccee
Q 016922 271 CYGVDNALVRVADPTFLGYFIDKGVSAGAKVVRK--AYPQEKVGVFVRRGKGGPLTVVEYSELDPSLASAINQETGRLRF 348 (380)
Q Consensus 271 v~~vDN~L~~~~Dp~~lG~~~~~~~d~~~kvv~k--~~p~e~vGvl~~~~~~g~~~vvEYsel~~~~~~~~~~~~g~l~f 348 (380)
|.+.|++. ...--.++-+|.++++++++-+.+. .+ ....|++... .+| .|.++.|-|..-.. .. .....
T Consensus 134 Vl~gD~l~-~~dl~~ll~~h~~~~~~~tl~~~~~~~~~-~~~yG~v~~d-~~~--~V~~~~EKp~~~~~-~~---~~~~~ 204 (425)
T PRK00725 134 ILAGDHIY-KMDYSRMLADHVESGADCTVACLEVPREE-ASAFGVMAVD-END--RITAFVEKPANPPA-MP---GDPDK 204 (425)
T ss_pred EecCCeEe-ccCHHHHHHHHHHcCCCEEEEEEecchhh-cccceEEEEC-CCC--CEEEEEECCCCccc-cc---cCccc
Confidence 99999975 3333347777888888887655332 23 3577988764 244 46677765432110 00 00111
Q ss_pred ccccccchhccHHHHHHHHh
Q 016922 349 CWSNVCLHMFTLDFLNQVAN 368 (380)
Q Consensus 349 ~~gNi~~~~f~l~fL~~~~~ 368 (380)
+..|+++++|+.++|.+++.
T Consensus 205 ~l~n~GIYi~~~~~L~~~L~ 224 (425)
T PRK00725 205 SLASMGIYVFNADYLYELLE 224 (425)
T ss_pred eEEEeeEEEEeHHHHHHHHH
Confidence 24689999999998876543
No 31
>PLN02241 glucose-1-phosphate adenylyltransferase
Probab=99.07 E-value=4.6e-09 Score=107.93 Aligned_cols=213 Identities=17% Similarity=0.260 Sum_probs=131.4
Q ss_pred CEEEEEecCCCccccC---CCCCCccccccCCCCC-ccHHHHHHHHHHHHHHHHhhhcCCCCCCCCceeEEEEcCCCchH
Q 016922 119 KLAVLLLSGGQGTRLG---SSDPKGCVNIGLPSGK-SLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDD 194 (380)
Q Consensus 119 kvavvlLAGG~GTRLg---~~~PKg~~~i~l~s~k-sllq~~~e~i~~l~~la~~~~~~~~~~~~~~ip~~IMTS~~t~e 194 (380)
++.+|+||||.||||. .+.||+|+|+ .++ +++++.++.+.. .+ |.-+++...+..+
T Consensus 3 ~~~aIIlA~G~gtRl~PlT~~~PK~llpv---~g~~plId~~L~~l~~---------------~G--i~~i~iv~~~~~~ 62 (436)
T PLN02241 3 SVAAIILGGGAGTRLFPLTKRRAKPAVPI---GGNYRLIDIPMSNCIN---------------SG--INKIYVLTQFNSA 62 (436)
T ss_pred ceEEEEEeCCCCCcchhhhcCCcccceEe---CCcceEehHHHHHHHh---------------CC--CCEEEEEeccCHH
Confidence 7899999999999998 6789999999 775 999999888763 23 4556667778999
Q ss_pred HHHHHHhhcCCCCCCCCceEEEEeCCeeeEecCCcccccCCCccccccCCCchhhHHHhhCChHHHHHHCCCeEEEEEcC
Q 016922 195 ATRKYFEGHKYFGLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGV 274 (380)
Q Consensus 195 ~t~~~f~~~~~FGl~~~~V~~f~Q~~~P~~~~~gki~l~~~~~i~~~P~GnGgi~~aL~~~g~l~~l~~~Gi~yi~v~~v 274 (380)
.+.+||++...|+.... +.++.+..+.. .++ ..-...|.|+||.++.... .+++...++-+++++.+.
T Consensus 63 ~i~~~l~~~~~~~~~~~----~~~~~~~i~~~-----~q~-~~~~~~~lGt~~al~~~~~--~~~~~~~~~~~~~lv~~g 130 (436)
T PLN02241 63 SLNRHLSRAYNFGNGGN----FGDGFVEVLAA-----TQT-PGEKGWFQGTADAVRQFLW--LFEDAKNKNVEEVLILSG 130 (436)
T ss_pred HHHHHHhccCCCCCCcc----cCCCCEEEcCC-----ccc-CCCCccccCcHHHHHHHHH--HHHhcccCCCCEEEEecC
Confidence 99999986433443211 00000100000 000 0011258999998865432 122221123578999999
Q ss_pred CCcccccCCHHHHHHHHHhCCceEEEEeecC--CCCcccceEEEEcCCCCeEEEEecccChhhhh---hh-------ccC
Q 016922 275 DNALVRVADPTFLGYFIDKGVSAGAKVVRKA--YPQEKVGVFVRRGKGGPLTVVEYSELDPSLAS---AI-------NQE 342 (380)
Q Consensus 275 DN~L~~~~Dp~~lG~~~~~~~d~~~kvv~k~--~p~e~vGvl~~~~~~g~~~vvEYsel~~~~~~---~~-------~~~ 342 (380)
|++. ...--.++-+|.++++++++-+.+.. .+ +..|++... .+| +|++|.|.|..-.. +. +++
T Consensus 131 D~v~-~~dl~~ll~~h~~~~a~~ti~~~~v~~~~~-~~ygvv~~d-~~~--~v~~~~Ekp~~~~~~~~~~~~~~~~~~~~ 205 (436)
T PLN02241 131 DHLY-RMDYMDFVQKHRESGADITIACLPVDESRA-SDFGLMKID-DTG--RIIEFSEKPKGDELKAMQVDTTVLGLSPE 205 (436)
T ss_pred CeEE-ccCHHHHHHHHHHcCCCEEEEEEecchhhc-CcceEEEEC-CCC--CEEEEEECCCCcccccccccccccccccc
Confidence 9974 44434577888888998876554432 23 678998763 344 68888887642110 00 000
Q ss_pred CCcceeccccccchhccHHHHHHHHh
Q 016922 343 TGRLRFCWSNVCLHMFTLDFLNQVAN 368 (380)
Q Consensus 343 ~g~l~f~~gNi~~~~f~l~fL~~~~~ 368 (380)
.-...-+..|+++++|+.+.|..+.+
T Consensus 206 ~~~~~~~~~~~GIyi~~~~~l~~ll~ 231 (436)
T PLN02241 206 EAKEKPYIASMGIYVFKKDVLLKLLR 231 (436)
T ss_pred cccccceEEEeEEEEEEHHHHHHHHH
Confidence 00001124699999999999877654
No 32
>TIGR02623 G1P_cyt_trans glucose-1-phosphate cytidylyltransferase. Members of this family are the enzyme glucose-1-phosphate cytidylyltransferase, also called CDP-glucose pyrophosphorylase, the product of the rfbF gene.
Probab=99.06 E-value=3.7e-09 Score=100.94 Aligned_cols=194 Identities=16% Similarity=0.234 Sum_probs=121.7
Q ss_pred EEEecCCCccccCC---CCCCccccccCCCCCccHHHHHHHHHHHHHHHHhhhcCCCCCCCCceeEEEEcCCCchHHHHH
Q 016922 122 VLLLSGGQGTRLGS---SDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRK 198 (380)
Q Consensus 122 vvlLAGG~GTRLg~---~~PKg~~~i~l~s~ksllq~~~e~i~~l~~la~~~~~~~~~~~~~~ip~~IMTS~~t~e~t~~ 198 (380)
+|+||||.||||+. +.||.|+|| .|++++++.++.+.+ .+ |.-+++...+..+.+.+
T Consensus 2 avilaaG~gtRl~~~t~~~pK~llpv---~g~pii~~~l~~l~~---------------~g--i~~i~iv~~~~~~~i~~ 61 (254)
T TIGR02623 2 AVILAGGLGTRISEETHLRPKPMVEI---GGKPILWHIMKIYSH---------------HG--INDFIICCGYKGYVIKE 61 (254)
T ss_pred EEEEcCccccccCccccCCCcceeEE---CCEEHHHHHHHHHHH---------------CC--CCEEEEEcCCCHHHHHH
Confidence 58899999999974 489999999 899999988776653 23 66777788889999999
Q ss_pred HHhhcCCCCCCCCceEEEEeCCeeeEecCCcccccCCCccccccCCCchhhHHHhhCChHHHHHHCCCeEEEEEcCCCcc
Q 016922 199 YFEGHKYFGLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGVDNAL 278 (380)
Q Consensus 199 ~f~~~~~FGl~~~~V~~f~Q~~~P~~~~~gki~l~~~~~i~~~P~GnGgi~~aL~~~g~l~~l~~~Gi~yi~v~~vDN~L 278 (380)
+|.+...++.+ -++.+ +++.+.....+.+.. .-.......|.|+||.+...... + +-+.+.+.+.|++.
T Consensus 62 ~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~gt~~al~~~~~~-----i---~~e~flv~~gD~i~ 130 (254)
T TIGR02623 62 YFANYFLHMSD-VTFHM-ADNTMEVHHKRVEPW-RVTLVDTGESTQTGGRLKRVREY-----L---DDEAFCFTYGDGVA 130 (254)
T ss_pred HHHhhhhcccC-eeEEe-cccccccccccCCcc-ceeeeecCCcCCcHHHHHHHHHh-----c---CCCeEEEEeCCeEe
Confidence 99864333221 12222 222222221111000 00001123679999987755331 2 13567788999974
Q ss_pred cccCCHHHHHHHHHhCCceEEEEeecCCCCcccceEEEEcCCCCeEEEEecccChhhhhhhccCCCcceeccccccchhc
Q 016922 279 VRVADPTFLGYFIDKGVSAGAKVVRKAYPQEKVGVFVRRGKGGPLTVVEYSELDPSLASAINQETGRLRFCWSNVCLHMF 358 (380)
Q Consensus 279 ~~~~Dp~~lG~~~~~~~d~~~kvv~k~~p~e~vGvl~~~~~~g~~~vvEYsel~~~~~~~~~~~~g~l~f~~gNi~~~~f 358 (380)
...--.++-+|.+.++++++.++. . .++.|++... +| .|.++.|-|.. .+ +..|+++++|
T Consensus 131 -~~dl~~~~~~h~~~~~d~tl~~~~--~-~~~yG~v~~d--~~--~V~~~~Ekp~~--------~~----~~i~~Giyi~ 190 (254)
T TIGR02623 131 -DIDIKALIAFHRKHGKKATVTAVQ--P-PGRFGALDLE--GE--QVTSFQEKPLG--------DG----GWINGGFFVL 190 (254)
T ss_pred -cCCHHHHHHHHHHcCCCEEEEEec--C-CCcccEEEEC--CC--eEEEEEeCCCC--------CC----CeEEEEEEEE
Confidence 433344777788888888765542 3 3677997653 34 57777764321 01 2368899999
Q ss_pred cHHHHHHH
Q 016922 359 TLDFLNQV 366 (380)
Q Consensus 359 ~l~fL~~~ 366 (380)
+.+.++.+
T Consensus 191 ~~~il~~l 198 (254)
T TIGR02623 191 NPSVLDLI 198 (254)
T ss_pred cHHHHhhc
Confidence 99988544
No 33
>cd04181 NTP_transferase NTP_transferases catalyze the transfer of nucleotides onto phosphosugars. Nucleotidyltransferases transfer nucleotides onto phosphosugars. The enzyme family includes Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase. The products are activated sugars that are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides.
Probab=99.05 E-value=3.6e-09 Score=96.86 Aligned_cols=178 Identities=21% Similarity=0.346 Sum_probs=117.9
Q ss_pred EEEecCCCccccC---CCCCCccccccCCCCCccHHHHHHHHHHHHHHHHhhhcCCCCCCCCceeEEEEcCCCchHHHHH
Q 016922 122 VLLLSGGQGTRLG---SSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRK 198 (380)
Q Consensus 122 vvlLAGG~GTRLg---~~~PKg~~~i~l~s~ksllq~~~e~i~~l~~la~~~~~~~~~~~~~~ip~~IMTS~~t~e~t~~ 198 (380)
+|+||||.||||+ ...||.++|+ .|++++++.++.+.. .+ +.-++....+..+.+.+
T Consensus 1 aiIlaaG~g~R~~~~t~~~pK~ll~v---~g~pli~~~l~~l~~---------------~g--~~~i~vv~~~~~~~i~~ 60 (217)
T cd04181 1 AVILAAGKGTRLRPLTDTRPKPLLPI---AGKPILEYIIERLAR---------------AG--IDEIILVVGYLGEQIEE 60 (217)
T ss_pred CEEecCCccccccccccCCCccccEE---CCeeHHHHHHHHHHH---------------CC--CCEEEEEeccCHHHHHH
Confidence 4899999999997 4679999999 889999999998764 12 33334444456788999
Q ss_pred HHhhcCCCCCCCCceEEEEeCCeeeEecCCcccccCCCccccccCCCchhhHHHhhCChHHHHHHCCCeEEEEEcCCCcc
Q 016922 199 YFEGHKYFGLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGVDNAL 278 (380)
Q Consensus 199 ~f~~~~~FGl~~~~V~~f~Q~~~P~~~~~gki~l~~~~~i~~~P~GnGgi~~aL~~~g~l~~l~~~Gi~yi~v~~vDN~L 278 (380)
++.+...+|+ .|.+.. ...|.|+++.+..... .+ .-+++.|.+.|++.
T Consensus 61 ~~~~~~~~~~---~i~~~~---------------------~~~~~g~~~al~~~~~-----~~---~~~~~lv~~~D~~~ 108 (217)
T cd04181 61 YFGDGSKFGV---NIEYVV---------------------QEEPLGTAGAVRNAED-----FL---GDDDFLVVNGDVLT 108 (217)
T ss_pred HHcChhhcCc---eEEEEe---------------------CCCCCccHHHHHHhhh-----hc---CCCCEEEEECCeec
Confidence 9986543453 232221 1236788777665432 22 35688999999975
Q ss_pred cccCCHHHHHHHHHhCCceEEEEeecCCCCcccceEEEEcCCCCeEEEEecccChhhhhhhccCCCcceeccccccchhc
Q 016922 279 VRVADPTFLGYFIDKGVSAGAKVVRKAYPQEKVGVFVRRGKGGPLTVVEYSELDPSLASAINQETGRLRFCWSNVCLHMF 358 (380)
Q Consensus 279 ~~~~Dp~~lG~~~~~~~d~~~kvv~k~~p~e~vGvl~~~~~~g~~~vvEYsel~~~~~~~~~~~~g~l~f~~gNi~~~~f 358 (380)
....-.++-++..+++++++-+.+.. ...+.|.+... .+| .|+++.|-+... .. ...|+++++|
T Consensus 109 -~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~d-~~~--~v~~~~ek~~~~-------~~----~~~~~Giy~~ 172 (217)
T cd04181 109 -DLDLSELLRFHREKGADATIAVKEVE-DPSRYGVVELD-DDG--RVTRFVEKPTLP-------ES----NLANAGIYIF 172 (217)
T ss_pred -CcCHHHHHHHHHhcCCCEEEEEEEcC-CCCcceEEEEc-CCC--cEEEEEECCCCC-------CC----CEEEEEEEEE
Confidence 44444466777788888877766654 44677887653 334 577777654321 00 1358888889
Q ss_pred cHHHHHHHH
Q 016922 359 TLDFLNQVA 367 (380)
Q Consensus 359 ~l~fL~~~~ 367 (380)
+.++++.+.
T Consensus 173 ~~~~~~~l~ 181 (217)
T cd04181 173 EPEILDYIP 181 (217)
T ss_pred CHHHHHhhh
Confidence 988875543
No 34
>PRK02862 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=99.05 E-value=7.7e-09 Score=106.13 Aligned_cols=202 Identities=17% Similarity=0.225 Sum_probs=125.0
Q ss_pred CEEEEEecCCCccccC---CCCCCccccccCCCCC-ccHHHHHHHHHHHHHHHHhhhcCCCCCCCCceeEEEEcCCCchH
Q 016922 119 KLAVLLLSGGQGTRLG---SSDPKGCVNIGLPSGK-SLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDD 194 (380)
Q Consensus 119 kvavvlLAGG~GTRLg---~~~PKg~~~i~l~s~k-sllq~~~e~i~~l~~la~~~~~~~~~~~~~~ip~~IMTS~~t~e 194 (380)
++.+|+||||.||||. .+.||.|+|| .|+ +++++.++++.. .+ +.-+++...+..+
T Consensus 3 ~~~AVILAaG~GtRL~PLT~~~PK~Llpi---~gk~plI~~~L~~l~~---------------~G--i~~vivv~~~~~~ 62 (429)
T PRK02862 3 RVLAIILGGGAGTRLYPLTKLRAKPAVPL---AGKYRLIDIPISNCIN---------------SG--INKIYVLTQFNSA 62 (429)
T ss_pred cEEEEEECCCCCCcchhhhcCCcceeeEE---CCeeEEeHHHHHHHHH---------------CC--CCEEEEEecCCHH
Confidence 7889999999999997 4789999999 788 999999997764 23 4445566667899
Q ss_pred HHHHHHhhcCCCCCCCCc-eEEEEeCCeeeEecCCcccccCCCccc---cccCCCchhhHHHhhCChHHHHHHCCCeEEE
Q 016922 195 ATRKYFEGHKYFGLESDQ-VTFFQQGTIPCVSKDGRFIMETPYKVA---KAPDGNGGVYSALKSSKLLEDMATRGIKYID 270 (380)
Q Consensus 195 ~t~~~f~~~~~FGl~~~~-V~~f~Q~~~P~~~~~gki~l~~~~~i~---~~P~GnGgi~~aL~~~g~l~~l~~~Gi~yi~ 270 (380)
.++++|.+...++..... +.+. .+.+.. ..+.|+||.++... +.+....-++++
T Consensus 63 ~i~~~l~~~~~~~~~~~g~~~i~-----------------~~~~~~~~~~~~lGTa~al~~a~-----~~l~~~~~~~~l 120 (429)
T PRK02862 63 SLNRHISQTYNFDGFSGGFVEVL-----------------AAQQTPENPSWFQGTADAVRKYL-----WHFQEWDVDEYL 120 (429)
T ss_pred HHHHHHhcCcCccccCCCEEEEe-----------------CCcccCCCCccccCcHHHHHHHH-----HHHHhcCCCEEE
Confidence 999999863222211000 1111 001111 12379999877553 333333346789
Q ss_pred EEcCCCcccccCCHHHHHHHHHhCCceEEEEeecCC-CCcccceEEEEcCCCCeEEEEecccChhhh-hh--h-------
Q 016922 271 CYGVDNALVRVADPTFLGYFIDKGVSAGAKVVRKAY-PQEKVGVFVRRGKGGPLTVVEYSELDPSLA-SA--I------- 339 (380)
Q Consensus 271 v~~vDN~L~~~~Dp~~lG~~~~~~~d~~~kvv~k~~-p~e~vGvl~~~~~~g~~~vvEYsel~~~~~-~~--~------- 339 (380)
|.+.|++. ...--.++-+|.+.++++++-+.+... .....|++... .+| +|.++.|-|.... +. .
T Consensus 121 Vl~gD~l~-~~dl~~ll~~h~~~~a~~tl~~~~~~~~~~~~yG~i~~d-~~g--~V~~~~Ekp~~~~~~~~~~~~s~~~~ 196 (429)
T PRK02862 121 ILSGDQLY-RMDYRLFVQHHRETGADITLAVLPVDEKDASGFGLMKTD-DDG--RITEFSEKPKGDELKAMAVDTSRLGL 196 (429)
T ss_pred EecCCEEE-eCCHHHHHHHHHHcCCCEEEEEEecChhhcccceEEEEC-CCC--cEEEEEECCCccccchhccccccccc
Confidence 99999964 333335777788888888765543321 12467887663 345 5666666654210 00 0
Q ss_pred cc--CCCcceeccccccchhccHHHHHHHHh
Q 016922 340 NQ--ETGRLRFCWSNVCLHMFTLDFLNQVAN 368 (380)
Q Consensus 340 ~~--~~g~l~f~~gNi~~~~f~l~fL~~~~~ 368 (380)
++ ...+. ...|+++++|+.++|.++.+
T Consensus 197 ~~~~~~~~~--~~~n~Giyi~~~~vl~~~l~ 225 (429)
T PRK02862 197 SPEEAKGKP--YLASMGIYVFSRDVLFDLLN 225 (429)
T ss_pred ccccCCCCc--eEEEEEEEEEcHHHHHHHHH
Confidence 00 00011 13588999999999987754
No 35
>PRK14356 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.03 E-value=9.4e-09 Score=105.61 Aligned_cols=185 Identities=18% Similarity=0.219 Sum_probs=114.8
Q ss_pred CEEEEEecCCCccccCCCCCCccccccCCCCCccHHHHHHHHHHHHHHHHhhhcCCCCCCCCceeEEEEcCCCchHHHHH
Q 016922 119 KLAVLLLSGGQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRK 198 (380)
Q Consensus 119 kvavvlLAGG~GTRLg~~~PKg~~~i~l~s~ksllq~~~e~i~~l~~la~~~~~~~~~~~~~~ip~~IMTS~~t~e~t~~ 198 (380)
.+.+|+||||.||||+.+.||.|+|+ .+||++++.++.+.+ .+ +.-++++..+..+.+.+
T Consensus 5 ~~~aiILAaG~gtR~~~~~pK~l~~i---~gkpli~~~l~~l~~---------------~~--~~~iivv~~~~~~~i~~ 64 (456)
T PRK14356 5 TTGALILAAGKGTRMHSDKPKVLQTL---LGEPMLRFVYRALRP---------------LF--GDNVWTVVGHRADMVRA 64 (456)
T ss_pred ceeEEEEcCCCCccCCCCCCceeccc---CCCcHHHHHHHHHHh---------------cC--CCcEEEEECCCHHHHHH
Confidence 58899999999999998899999999 899999999997753 12 23344445566777777
Q ss_pred HHhhcCCCCCCCCceEEEEeCCeeeEecCCcccccCCCccccccCCCchhhHHHhhCChHHHHHHCCCeEEEEEcCCCcc
Q 016922 199 YFEGHKYFGLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGVDNAL 278 (380)
Q Consensus 199 ~f~~~~~FGl~~~~V~~f~Q~~~P~~~~~gki~l~~~~~i~~~P~GnGgi~~aL~~~g~l~~l~~~Gi~yi~v~~vDN~L 278 (380)
++.+. ++.+.. ...|.|+|+..... ++.+.+.+.+++++.+.|.++
T Consensus 65 ~~~~~--------~~~~v~---------------------~~~~~Gt~~al~~a-----~~~l~~~~~d~vlv~~gD~P~ 110 (456)
T PRK14356 65 AFPDE--------DARFVL---------------------QEQQLGTGHALQCA-----WPSLTAAGLDRVLVVNGDTPL 110 (456)
T ss_pred hcccc--------CceEEE---------------------cCCCCCcHHHHHHH-----HHHHhhcCCCcEEEEeCCccc
Confidence 76531 222221 12367877655432 344544456889999999976
Q ss_pred cccCCHHHHHHHHH--hCCceEEEEeecCCCCcccceEEEEcCCCCeEEEEecccChhhhhhhccCCCcceeccccccch
Q 016922 279 VRVADPTFLGYFID--KGVSAGAKVVRKAYPQEKVGVFVRRGKGGPLTVVEYSELDPSLASAINQETGRLRFCWSNVCLH 356 (380)
Q Consensus 279 ~~~~Dp~~lG~~~~--~~~d~~~kvv~k~~p~e~vGvl~~~~~~g~~~vvEYsel~~~~~~~~~~~~g~l~f~~gNi~~~ 356 (380)
. ++..+-..++ .++++++.+.+..+| ..+|++.. ++| .|.++.|-++.......+. ....|++++
T Consensus 111 i---~~~~i~~li~~~~~~~~~l~~~~~~~~-~~~g~v~~--~~g--~V~~~~ek~~~~~~~~~~~-----~~~~~~GiY 177 (456)
T PRK14356 111 V---TTDTIDDFLKEAAGADLAFMTLTLPDP-GAYGRVVR--RNG--HVAAIVEAKDYDEALHGPE-----TGEVNAGIY 177 (456)
T ss_pred C---CHHHHHHHHHHHhcCCEEEEEEEcCCC-CCceEEEE--cCC--eEEEEEECCCCChHHhhhh-----cCeEEEEEE
Confidence 3 3333332222 356666555555555 56788765 256 4555554433111000110 123578889
Q ss_pred hccHHHHHHHHhcc
Q 016922 357 MFTLDFLNQVANGL 370 (380)
Q Consensus 357 ~f~l~fL~~~~~~~ 370 (380)
+|+.++++++...+
T Consensus 178 ~f~~~~l~~ll~~l 191 (456)
T PRK14356 178 YLRLDAVESLLPRL 191 (456)
T ss_pred EEEHHHHHHHHHhc
Confidence 99999888775543
No 36
>COG1207 GlmU N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane]
Probab=99.00 E-value=1.6e-08 Score=101.82 Aligned_cols=187 Identities=18% Similarity=0.193 Sum_probs=140.0
Q ss_pred CEEEEEecCCCccccCCCCCCccccccCCCCCccHHHHHHHHHHHHHHHHhhhcCCCCCCCCceeEEEEcCCCchHHHHH
Q 016922 119 KLAVLLLSGGQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRK 198 (380)
Q Consensus 119 kvavvlLAGG~GTRLg~~~PKg~~~i~l~s~ksllq~~~e~i~~l~~la~~~~~~~~~~~~~~ip~~IMTS~~t~e~t~~ 198 (380)
.+.+|+||-|+||||.++.||-+=++ .|||++++.++....+ ...-++..-++-.+..++
T Consensus 2 ~~~~vILAAGkGTRMkS~lPKVLH~v---aGkpMl~hVi~~a~~l-----------------~~~~i~vVvGh~ae~V~~ 61 (460)
T COG1207 2 SLSAVILAAGKGTRMKSDLPKVLHPV---AGKPMLEHVIDAARAL-----------------GPDDIVVVVGHGAEQVRE 61 (460)
T ss_pred CceEEEEecCCCccccCCCcccchhc---cCccHHHHHHHHHhhc-----------------CcceEEEEEcCCHHHHHH
Confidence 47899999999999999999999888 9999999988866542 133456777899999999
Q ss_pred HHhhcCCCCCCCCceEEEEeCCeeeEecCCcccccCCCccccccCCCchhhHHHhhCChHHHHHHCCCe-EEEEEcCCCc
Q 016922 199 YFEGHKYFGLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIK-YIDCYGVDNA 277 (380)
Q Consensus 199 ~f~~~~~FGl~~~~V~~f~Q~~~P~~~~~gki~l~~~~~i~~~P~GnGgi~~aL~~~g~l~~l~~~Gi~-yi~v~~vDN~ 277 (380)
.+.+.. ++.|+.| ..|.|+|....+... ....+.+ .+.|.+.|-+
T Consensus 62 ~~~~~~-------~v~~v~Q---------------------~eqlGTgHAV~~a~~------~l~~~~~g~vLVl~GD~P 107 (460)
T COG1207 62 ALAERD-------DVEFVLQ---------------------EEQLGTGHAVLQALP------ALADDYDGDVLVLYGDVP 107 (460)
T ss_pred Hhcccc-------CceEEEe---------------------cccCChHHHHHhhhh------hhhcCCCCcEEEEeCCcc
Confidence 998632 5667766 349999999887632 3344555 7889999999
Q ss_pred ccccCCHH--HHHHHHHhCCceEEEEeecCCCCcccceEEEEcCCCC-eEEEEecccChhhhhhhccCCCcceecccccc
Q 016922 278 LVRVADPT--FLGYFIDKGVSAGAKVVRKAYPQEKVGVFVRRGKGGP-LTVVEYSELDPSLASAINQETGRLRFCWSNVC 354 (380)
Q Consensus 278 L~~~~Dp~--~lG~~~~~~~d~~~kvv~k~~p~e~vGvl~~~~~~g~-~~vvEYsel~~~~~~~~~~~~g~l~f~~gNi~ 354 (380)
|.. .+.+ ++.++...++.++.-...-.+| ..+|.|++. .+|+ .++||.-+-+++.++- .--|.+
T Consensus 108 Lit-~~TL~~L~~~~~~~~~~~tvLt~~~~dP-~GYGRIvr~-~~g~V~~IVE~KDA~~eek~I----------~eiNtG 174 (460)
T COG1207 108 LIT-AETLEELLAAHPAHGAAATVLTAELDDP-TGYGRIVRD-GNGEVTAIVEEKDASEEEKQI----------KEINTG 174 (460)
T ss_pred cCC-HHHHHHHHHhhhhcCCceEEEEEEcCCC-CCcceEEEc-CCCcEEEEEEcCCCCHHHhcC----------cEEeee
Confidence 843 3332 6677777788998888888888 677999986 3554 6889998887765431 124888
Q ss_pred chhccHHHHHHHHhcccc
Q 016922 355 LHMFTLDFLNQVANGLEK 372 (380)
Q Consensus 355 ~~~f~l~fL~~~~~~~~~ 372 (380)
+++|+-++|.+.+....+
T Consensus 175 iy~f~~~~L~~~L~~l~n 192 (460)
T COG1207 175 IYAFDGAALLRALPKLSN 192 (460)
T ss_pred EEEEcHHHHHHHHHHhcc
Confidence 888988888877655433
No 37
>COG1209 RfbA dTDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]
Probab=98.99 E-value=7.4e-09 Score=99.03 Aligned_cols=177 Identities=20% Similarity=0.283 Sum_probs=122.8
Q ss_pred EEEecCCCccccC---CCCCCccccccCCCCCccHHHHHHHHHHHHHHHHhhhcCCCCCCCCceeEEEEcCCCchHHHHH
Q 016922 122 VLLLSGGQGTRLG---SSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRK 198 (380)
Q Consensus 122 vvlLAGG~GTRLg---~~~PKg~~~i~l~s~ksllq~~~e~i~~l~~la~~~~~~~~~~~~~~ip~~IMTS~~t~e~t~~ 198 (380)
.||||||.||||. ...||.+.|| .+|+.+++-+++|.. .|.. -+.|.++..+....++
T Consensus 3 giILAgG~GTRL~PlT~~~~KqLlpV---~~KPmi~y~l~~L~~---------------aGI~-dI~II~~~~~~~~~~~ 63 (286)
T COG1209 3 GVILAGGSGTRLRPLTRVVPKQLLPV---YDKPMIYYPLETLML---------------AGIR-DILIVVGPEDKPTFKE 63 (286)
T ss_pred cEEecCcCccccccccccCCccccee---cCcchhHhHHHHHHH---------------cCCc-eEEEEecCCchhhhhh
Confidence 5899999999997 7889999999 899999999998874 2322 3466677778889999
Q ss_pred HHhhcCCCCCCCCceEEEEeCCeeeEecCCcccccCCCccccccCCCchhhHHHhhCChHHHHHHCCCeEEEEEcCCCcc
Q 016922 199 YFEGHKYFGLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGVDNAL 278 (380)
Q Consensus 199 ~f~~~~~FGl~~~~V~~f~Q~~~P~~~~~gki~l~~~~~i~~~P~GnGgi~~aL~~~g~l~~l~~~Gi~yi~v~~vDN~L 278 (380)
++.+.+.||++ +++-. ..+|.|=+..+..- +++. |-+-+.++-.||++
T Consensus 64 llGdgs~~gv~---itY~~---------------------Q~~p~GlA~Av~~a------~~fv--~~~~f~l~LGDNi~ 111 (286)
T COG1209 64 LLGDGSDFGVD---ITYAV---------------------QPEPDGLAHAVLIA------EDFV--GDDDFVLYLGDNIF 111 (286)
T ss_pred hhcCccccCcc---eEEEe---------------------cCCCCcHHHHHHHH------Hhhc--CCCceEEEecCcee
Confidence 99999999995 44544 46699998888733 3332 33456777899998
Q ss_pred cccCCHHHHHHHHHhCCceEEEEeecCCCCcccceEEEEcCCCCeEEEEecccChhhhhhhccCCCcceeccccccchhc
Q 016922 279 VRVADPTFLGYFIDKGVSAGAKVVRKAYPQEKVGVFVRRGKGGPLTVVEYSELDPSLASAINQETGRLRFCWSNVCLHMF 358 (380)
Q Consensus 279 ~~~~Dp~~lG~~~~~~~d~~~kvv~k~~p~e~vGvl~~~~~~g~~~vvEYsel~~~~~~~~~~~~g~l~f~~gNi~~~~f 358 (380)
-. .-..++-.+.+.+.+..+-+.+..+| ++.||+... .+| +++.--|-|++=. + |.+-++.++|
T Consensus 112 ~~-~l~~~~~~~~~~~~ga~i~~~~V~dP-~rfGV~e~d-~~~--~v~~l~EKP~~P~---------S--NlAvtGlY~~ 175 (286)
T COG1209 112 QD-GLSELLEHFAEEGSGATILLYEVDDP-SRYGVVEFD-EDG--KVIGLEEKPKEPK---------S--NLAVTGLYFY 175 (286)
T ss_pred cc-ChHHHHHHHhccCCCcEEEEEEcCCc-ccceEEEEc-CCC--cEEEeEECCCCCC---------C--ceeEEEEEEe
Confidence 76 55556666666556665555566677 899998775 355 4544444444210 1 2345666677
Q ss_pred cHHHHHH
Q 016922 359 TLDFLNQ 365 (380)
Q Consensus 359 ~l~fL~~ 365 (380)
+-+..+.
T Consensus 176 d~~Vf~~ 182 (286)
T COG1209 176 DPSVFEA 182 (286)
T ss_pred ChHHHHH
Confidence 7654443
No 38
>cd02509 GDP-M1P_Guanylyltransferase GDP-M1P_Guanylyltransferase catalyzes the formation of GDP-Mannose. GDP-mannose-1-phosphate guanylyltransferase, also called GDP-mannose pyrophosphorylase (GDP-MP), catalyzes the formation of GDP-Mannose from mannose-1-phosphate and GTP. Mannose is a key monosaccharide for glycosylation of proteins and lipids. GDP-Mannose is the activated donor for mannosylation of various biomolecules. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase and mannose-1-phosphate guanylyltransferase. This CD covers the N-terminal GDP-mannose-1-phosphate guanylyltransferase domain, whereas the isomerase function is located at the C-terminal half. GDP-MP is a member of the nucleotidyltransferase family of enzymes.
Probab=98.99 E-value=2.3e-08 Score=96.71 Aligned_cols=197 Identities=17% Similarity=0.125 Sum_probs=122.2
Q ss_pred EEEEecCCCccccC----CCCCCccccccCCCC-CccHHHHHHHHHHHHHHHHhhhcCCCCCCCCceeEEEEcCCCchHH
Q 016922 121 AVLLLSGGQGTRLG----SSDPKGCVNIGLPSG-KSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDA 195 (380)
Q Consensus 121 avvlLAGG~GTRLg----~~~PKg~~~i~l~s~-ksllq~~~e~i~~l~~la~~~~~~~~~~~~~~ip~~IMTS~~t~e~ 195 (380)
-+||||||.||||. .+.||.++|+ .| +|++|+.++++..+ .+. -.++|.|+....+.
T Consensus 2 ~~vILAgG~GtRl~PlS~~~~PK~ll~l---~g~~~li~~~l~~l~~~--------------~~~-~~i~vvt~~~~~~~ 63 (274)
T cd02509 2 YPVILAGGSGTRLWPLSRESYPKQFLKL---FGDKSLLQQTLDRLKGL--------------VPP-DRILVVTNEEYRFL 63 (274)
T ss_pred EEEEEcccccccCCcCCCCCCCceEeEc---CCCCcHHHHHHHHHhcC--------------CCC-CcEEEEechHHHHH
Confidence 47999999999996 4689999988 56 99999999987631 011 25678888766677
Q ss_pred HHHHHhhcCCCCCCCCceEEEEeCCeeeEecCCcccccCCCccccccCCCchhhHHHhhCChHHHHHHC-CCeEEEEEcC
Q 016922 196 TRKYFEGHKYFGLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATR-GIKYIDCYGV 274 (380)
Q Consensus 196 t~~~f~~~~~FGl~~~~V~~f~Q~~~P~~~~~gki~l~~~~~i~~~P~GnGgi~~aL~~~g~l~~l~~~-Gi~yi~v~~v 274 (380)
+++++++ .+ . .+.+. ++..|.|+|+...+.. ..+.++ +-+++.|.+.
T Consensus 64 v~~~l~~---~~-~--~~~ii---------------------~ep~~~gTa~ai~~a~-----~~~~~~~~~~~vlVl~~ 111 (274)
T cd02509 64 VREQLPE---GL-P--EENII---------------------LEPEGRNTAPAIALAA-----LYLAKRDPDAVLLVLPS 111 (274)
T ss_pred HHHHHhh---cC-C--CceEE---------------------ECCCCCCcHHHHHHHH-----HHHHhcCCCCeEEEecc
Confidence 8888865 11 1 12222 2344678888776442 222222 3468899999
Q ss_pred CCcccccCCH-HHHHHHH---HhCCceEEEEeecCCCCcccceEEEEcCC--CCeEEEEecccChhhhhhhccCCCccee
Q 016922 275 DNALVRVADP-TFLGYFI---DKGVSAGAKVVRKAYPQEKVGVFVRRGKG--GPLTVVEYSELDPSLASAINQETGRLRF 348 (380)
Q Consensus 275 DN~L~~~~Dp-~~lG~~~---~~~~d~~~kvv~k~~p~e~vGvl~~~~~~--g~~~vvEYsel~~~~~~~~~~~~g~l~f 348 (380)
|.++....+- ..+-.+. ..+..+++-+.+. .|...+|.|...... +...|..+.|-|+.-..+..-++|..
T Consensus 112 D~~i~~~~~f~~~l~~~~~~~~~~~~vt~gi~p~-~~~t~yGyI~~~~~~~~~~~~V~~f~EKP~~~~a~~~~~~g~~-- 188 (274)
T cd02509 112 DHLIEDVEAFLKAVKKAVEAAEEGYLVTFGIKPT-RPETGYGYIEAGEKLGGGVYRVKRFVEKPDLETAKEYLESGNY-- 188 (274)
T ss_pred hhcccCHHHHHHHHHHHHHHHHcCCEEEEEeeec-CCCCCeEEEEeCCcCCCCceEEeEEEECcChHHHHHHhhcCCe--
Confidence 9986311111 1232222 2566777766664 567889999764211 12478888888764322111112321
Q ss_pred ccccccchhccHHHHHHHHhccc
Q 016922 349 CWSNVCLHMFTLDFLNQVANGLE 371 (380)
Q Consensus 349 ~~gNi~~~~f~l~fL~~~~~~~~ 371 (380)
.-|.++++|+.+.+.+.++.+.
T Consensus 189 -~wNsGiyi~~~~~l~~~l~~~~ 210 (274)
T cd02509 189 -LWNSGIFLFRAKTFLEELKKHA 210 (274)
T ss_pred -EEECceeeeeHHHHHHHHHHHC
Confidence 2488999999988877766543
No 39
>cd02524 G1P_cytidylyltransferase G1P_cytidylyltransferase catalyzes the production of CDP-D-Glucose. Alpha-D-Glucose-1-phosphate Cytidylyltransferase catalyzes the production of CDP-D-Glucose from alpha-D-Glucose-1-phosphate and MgCTP as substrate. CDP-D-Glucose is the precursor for synthesizing four of the five naturally occurring 3,6-dideoxy sugars-abequose (3,6-dideoxy-D-Xylo-hexose), ascarylose (3,6-dideoxy-L-arabino-hexose), paratose (3,6-dideoxy-D-ribohexose), and tyvelose (3,6-dideoxy-D-arabino-hexose. Deoxysugars are ubiquitous in nature where they function in a variety of biological processes, including cell adhesion, immune response, determination of ABO blood groups, fertilization, antibiotic function, and microbial pathogenicity.
Probab=98.98 E-value=1.4e-08 Score=96.60 Aligned_cols=189 Identities=19% Similarity=0.265 Sum_probs=118.4
Q ss_pred EEEecCCCccccC---CCCCCccccccCCCCCccHHHHHHHHHHHHHHHHhhhcCCCCCCCCceeEEEEcCCCchHHHHH
Q 016922 122 VLLLSGGQGTRLG---SSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRK 198 (380)
Q Consensus 122 vvlLAGG~GTRLg---~~~PKg~~~i~l~s~ksllq~~~e~i~~l~~la~~~~~~~~~~~~~~ip~~IMTS~~t~e~t~~ 198 (380)
+|+||||.||||+ .+.||+|+|+ .+++++++.++.+.. .+ |.-++....+..+.+++
T Consensus 1 aiilaaG~g~Rl~plt~~~pK~llpv---~~~p~i~~~~~~~~~---------------~g--i~~i~iv~~~~~~~i~~ 60 (253)
T cd02524 1 VVILAGGLGTRLSEETELKPKPMVEI---GGRPILWHIMKIYSH---------------YG--HNDFILCLGYKGHVIKE 60 (253)
T ss_pred CEEEecCCccccCCccCCCCceEEEE---CCEEHHHHHHHHHHh---------------CC--CceEEEECCCCHHHHHH
Confidence 4899999999997 4689999999 899999887776653 23 55677777789999999
Q ss_pred HHhhcCCCCCCCCceEEEEeCCeeeEecCCcccc----cCCCcc----ccccCCCchhhHHHhhCChHHHHHHCCC-eEE
Q 016922 199 YFEGHKYFGLESDQVTFFQQGTIPCVSKDGRFIM----ETPYKV----AKAPDGNGGVYSALKSSKLLEDMATRGI-KYI 269 (380)
Q Consensus 199 ~f~~~~~FGl~~~~V~~f~Q~~~P~~~~~gki~l----~~~~~i----~~~P~GnGgi~~aL~~~g~l~~l~~~Gi-~yi 269 (380)
|+++...+|.+ +.+-.| ++++.. .+++.+ ...|.|+||.+....+ .+ +. +++
T Consensus 61 ~~~~~~~~~~~---~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~t~~al~~a~~-----~~---~~~~~~ 121 (253)
T cd02524 61 YFLNYFLHNSD---VTIDLG--------TNRIELHNSDIEDWKVTLVDTGLNTMTGGRLKRVRR-----YL---GDDETF 121 (253)
T ss_pred HHHhhhhhcCc---eeEeec--------ccceeeecccccccceeecccCcccccHHHHHHHHH-----hc---CCCCeE
Confidence 99875544432 222111 111000 011221 1347788887654422 12 22 689
Q ss_pred EEEcCCCcccccCCHHHHHHHHHhCCceEEEEeecCCCCcccceEEEEcCCCCeEEEEecccChhhhhhhccCCCcceec
Q 016922 270 DCYGVDNALVRVADPTFLGYFIDKGVSAGAKVVRKAYPQEKVGVFVRRGKGGPLTVVEYSELDPSLASAINQETGRLRFC 349 (380)
Q Consensus 270 ~v~~vDN~L~~~~Dp~~lG~~~~~~~d~~~kvv~k~~p~e~vGvl~~~~~~g~~~vvEYsel~~~~~~~~~~~~g~l~f~ 349 (380)
.+.+.|++... .--.++-++...++++++.++. +....|++... .+| .|.++.+-+... + .
T Consensus 122 lv~~gD~i~~~-dl~~ll~~h~~~~~~~tl~~~~---~~~~~g~v~~d-~~g--~V~~~~ekp~~~--------~----~ 182 (253)
T cd02524 122 MLTYGDGVSDV-NINALIEFHRSHGKLATVTAVH---PPGRFGELDLD-DDG--QVTSFTEKPQGD--------G----G 182 (253)
T ss_pred EEEcCCEEECC-CHHHHHHHHHHcCCCEEEEEec---CCCcccEEEEC-CCC--CEEEEEECCCCC--------C----c
Confidence 99999998643 3344666777788888765553 24667887653 345 466666543210 0 1
Q ss_pred cccccchhccHHHHHHHHh
Q 016922 350 WSNVCLHMFTLDFLNQVAN 368 (380)
Q Consensus 350 ~gNi~~~~f~l~fL~~~~~ 368 (380)
..|+++++|+.+.++.+.+
T Consensus 183 ~i~~Giyi~~~~l~~~l~~ 201 (253)
T cd02524 183 WINGGFFVLEPEVFDYIDG 201 (253)
T ss_pred eEEEEEEEECHHHHHhhcc
Confidence 2566778888887765543
No 40
>PRK14359 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=98.98 E-value=1.9e-08 Score=102.36 Aligned_cols=180 Identities=21% Similarity=0.254 Sum_probs=120.2
Q ss_pred CEEEEEecCCCccccCCCCCCccccccCCCCCccHHHHHHHHHHHHHHHHhhhcCCCCCCCCceeEEEEcCCCchHHHHH
Q 016922 119 KLAVLLLSGGQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRK 198 (380)
Q Consensus 119 kvavvlLAGG~GTRLg~~~PKg~~~i~l~s~ksllq~~~e~i~~l~~la~~~~~~~~~~~~~~ip~~IMTS~~t~e~t~~ 198 (380)
++.+||||||.||||+...||.|+|+ .|+|++++.++.+++. . -..+|++ .+..+.+.+
T Consensus 2 ~~~aiIlAaG~GtRl~~~~pK~Llpi---~gkPli~~~i~~l~~~---------------~--~~i~Ivv-~~~~~~i~~ 60 (430)
T PRK14359 2 KLSIIILAAGKGTRMKSSLPKVLHTI---CGKPMLFYILKEAFAI---------------S--DDVHVVL-HHQKERIKE 60 (430)
T ss_pred CccEEEEcCCCCccCCCCCCceeCEE---CCccHHHHHHHHHHHc---------------C--CcEEEEE-CCCHHHHHH
Confidence 46789999999999998899999999 8999999999987641 1 1234544 566888999
Q ss_pred HHhhcCCCCCCCCceEEEEeCCeeeEecCCcccccCCCccccccCCCchhhHHHhhCChHHHHHHCCCeEEEEEcCCCcc
Q 016922 199 YFEGHKYFGLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGVDNAL 278 (380)
Q Consensus 199 ~f~~~~~FGl~~~~V~~f~Q~~~P~~~~~gki~l~~~~~i~~~P~GnGgi~~aL~~~g~l~~l~~~Gi~yi~v~~vDN~L 278 (380)
++.+. ++ .+.+..|+ ...+.|+|+.+..+. ..-+++++.+.|+++
T Consensus 61 ~~~~~--~~----~v~~~~~~-------------------~~~~~gt~~al~~~~----------~~~d~vlv~~gD~p~ 105 (430)
T PRK14359 61 AVLEY--FP----GVIFHTQD-------------------LENYPGTGGALMGIE----------PKHERVLILNGDMPL 105 (430)
T ss_pred HHHhc--CC----ceEEEEec-------------------CccCCCcHHHHhhcc----------cCCCeEEEEECCccC
Confidence 98752 21 34444321 234678888776421 124689999999976
Q ss_pred cccCCHHHHHHHHHhCCceEEEEeecCCCCcccceEEEEcCCCCeEEEEecccChhhhhhhccCCCcceeccccccchhc
Q 016922 279 VRVADPTFLGYFIDKGVSAGAKVVRKAYPQEKVGVFVRRGKGGPLTVVEYSELDPSLASAINQETGRLRFCWSNVCLHMF 358 (380)
Q Consensus 279 ~~~~Dp~~lG~~~~~~~d~~~kvv~k~~p~e~vGvl~~~~~~g~~~vvEYsel~~~~~~~~~~~~g~l~f~~gNi~~~~f 358 (380)
.++..+-.+.+.++++.+.+.+..+| ...|++... +| .++++.|-+....+ ....+..|.++++|
T Consensus 106 ---~~~~~l~~l~~~~~~~~v~~~~~~~~-~~~g~v~~d--~g--~v~~i~e~~~~~~~-------~~~~~~~~~Giyif 170 (430)
T PRK14359 106 ---VEKDELEKLLENDADIVMSVFHLADP-KGYGRVVIE--NG--QVKKIVEQKDANEE-------ELKIKSVNAGVYLF 170 (430)
T ss_pred ---CCHHHHHHHHhCCCCEEEEEEEcCCC-ccCcEEEEc--CC--eEEEEEECCCCCcc-------cccceEEEeEEEEE
Confidence 36777777777778877666665555 346876542 55 45555443321110 01112458889999
Q ss_pred cHHHHHHHHhc
Q 016922 359 TLDFLNQVANG 369 (380)
Q Consensus 359 ~l~fL~~~~~~ 369 (380)
+.++|+++.+.
T Consensus 171 ~~~~l~~~~~~ 181 (430)
T PRK14359 171 DRKLLEEYLPL 181 (430)
T ss_pred EHHHHHHHHHh
Confidence 99999887653
No 41
>PRK14358 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=98.98 E-value=1.2e-08 Score=106.18 Aligned_cols=182 Identities=17% Similarity=0.195 Sum_probs=114.5
Q ss_pred CEEEEEecCCCccccCCCCCCccccccCCCCCccHHHHHHHHHHHHHHHHhhhcCCCCCCCCceeEEEEcCCCchHHHHH
Q 016922 119 KLAVLLLSGGQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRK 198 (380)
Q Consensus 119 kvavvlLAGG~GTRLg~~~PKg~~~i~l~s~ksllq~~~e~i~~l~~la~~~~~~~~~~~~~~ip~~IMTS~~t~e~t~~ 198 (380)
++.+|+||||.||||+...||.|+|+ .+++++++.++++.+ .+ +.-+++...+..+.+++
T Consensus 7 ~~~avILAaG~gtRl~~~~pK~llpi---~gkpli~~~l~~l~~---------------~g--i~~ivvv~~~~~~~i~~ 66 (481)
T PRK14358 7 PLDVVILAAGQGTRMKSALPKVLHPV---AGRPMVAWAVKAARD---------------LG--ARKIVVVTGHGAEQVEA 66 (481)
T ss_pred CceEEEECCCCCCcCCCCCCceecEE---CCeeHHHHHHHHHHh---------------CC--CCeEEEEeCCCHHHHHH
Confidence 58899999999999998889999999 789999999988764 12 33445555667788888
Q ss_pred HHhhcCCCCCCCCceEEEEeCCeeeEecCCcccccCCCccccccCCCchhhHHHhhCChHHHHHHCCCeEEEEEcCCCcc
Q 016922 199 YFEGHKYFGLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGVDNAL 278 (380)
Q Consensus 199 ~f~~~~~FGl~~~~V~~f~Q~~~P~~~~~gki~l~~~~~i~~~P~GnGgi~~aL~~~g~l~~l~~~Gi~yi~v~~vDN~L 278 (380)
+|+. . .+.+.. ...|.|.|+.+++.. +.+. ..-+.++|.+.|+++
T Consensus 67 ~~~~---~-----~i~~v~---------------------~~~~~Gt~~al~~~~-----~~l~-~~~~~~lV~~gD~P~ 111 (481)
T PRK14358 67 ALQG---S-----GVAFAR---------------------QEQQLGTGDAFLSGA-----SALT-EGDADILVLYGDTPL 111 (481)
T ss_pred Hhcc---C-----CcEEec---------------------CCCcCCcHHHHHHHH-----HHhh-CCCCcEEEEeCCeec
Confidence 8852 1 133321 123778888765432 2232 222236778999976
Q ss_pred cccCCH-HHHHHHHHhCCceEEEEeecCCCCcccceEEEEcCCCCeEEEEecccChhhhhhhccCCCcceeccccccchh
Q 016922 279 VRVADP-TFLGYFIDKGVSAGAKVVRKAYPQEKVGVFVRRGKGGPLTVVEYSELDPSLASAINQETGRLRFCWSNVCLHM 357 (380)
Q Consensus 279 ~~~~Dp-~~lG~~~~~~~d~~~kvv~k~~p~e~vGvl~~~~~~g~~~vvEYsel~~~~~~~~~~~~g~l~f~~gNi~~~~ 357 (380)
....+. .++.++.+.++++++-+.+..++ .++|++... .+| .|.++.|-++....+. . + +..|+++++
T Consensus 112 i~~~~l~~ll~~~~~~~~~~ti~~~~~~~~-~~yG~v~~d-~~g--~v~~~~Ek~~~~~~~~-~----~--~~~n~Giyi 180 (481)
T PRK14358 112 LRPDTLRALVADHRAQGSAMTILTGELPDA-TGYGRIVRG-ADG--AVERIVEQKDATDAEK-A----I--GEFNSGVYV 180 (481)
T ss_pred cCHHHHHHHHHHHHhcCCeEEEEEEEcCCC-CCceEEEEC-CCC--CEEEEEECCCCChhHh-h----C--CeEEEEEEE
Confidence 432222 24556666777776655554444 568998764 355 4667766544211100 0 1 125788888
Q ss_pred cc---HHHHHHH
Q 016922 358 FT---LDFLNQV 366 (380)
Q Consensus 358 f~---l~fL~~~ 366 (380)
|+ .++++++
T Consensus 181 ~~~~~~~~~~~i 192 (481)
T PRK14358 181 FDARAPELARRI 192 (481)
T ss_pred EchHHHHHHHhc
Confidence 98 5556554
No 42
>cd06426 NTP_transferase_like_2 NTP_trnasferase_like_2 is a member of the nucleotidyl transferase family. This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase.
Probab=98.97 E-value=1.5e-08 Score=93.57 Aligned_cols=174 Identities=19% Similarity=0.352 Sum_probs=113.3
Q ss_pred EEEecCCCccccC---CCCCCccccccCCCCCccHHHHHHHHHHHHHHHHhhhcCCCCCCCCceeEEEEcCCCchHHHHH
Q 016922 122 VLLLSGGQGTRLG---SSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRK 198 (380)
Q Consensus 122 vvlLAGG~GTRLg---~~~PKg~~~i~l~s~ksllq~~~e~i~~l~~la~~~~~~~~~~~~~~ip~~IMTS~~t~e~t~~ 198 (380)
+|+||||.|+||+ ...||+++|+ .|++++++.++.+.. .+ +.-+++...+..+.+++
T Consensus 1 ~vIlaaG~g~R~~plt~~~pK~ll~~---~g~pli~~~l~~l~~---------------~~--~~~iivv~~~~~~~i~~ 60 (220)
T cd06426 1 VVIMAGGKGTRLRPLTENTPKPMLKV---GGKPILETIIDRFIA---------------QG--FRNFYISVNYLAEMIED 60 (220)
T ss_pred CEEecCCCccccCcccCCCCCccCeE---CCcchHHHHHHHHHH---------------CC--CcEEEEECccCHHHHHH
Confidence 5899999999997 4689999999 899999999998764 12 44455666677888999
Q ss_pred HHhhcCCCCCCCCceEEEEeCCeeeEecCCcccccCCCccccccCCCchhhHHHhhCChHHHHHHCCCeEEEEEcCCCcc
Q 016922 199 YFEGHKYFGLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGVDNAL 278 (380)
Q Consensus 199 ~f~~~~~FGl~~~~V~~f~Q~~~P~~~~~gki~l~~~~~i~~~P~GnGgi~~aL~~~g~l~~l~~~Gi~yi~v~~vDN~L 278 (380)
++.+...+|++ +.+.. ...|.|.|+.+..+... .-+.++|.+.|++.
T Consensus 61 ~~~~~~~~~~~---i~~~~---------------------~~~~~g~~~~l~~~~~~---------~~~~~lv~~~D~i~ 107 (220)
T cd06426 61 YFGDGSKFGVN---ISYVR---------------------EDKPLGTAGALSLLPEK---------PTDPFLVMNGDILT 107 (220)
T ss_pred HHCCccccCcc---EEEEE---------------------CCCCCcchHHHHHHHhh---------CCCCEEEEcCCEee
Confidence 98864444432 22221 12467888887655432 13578888999864
Q ss_pred cccCCHHHHHHHHHhCCceEEEEeecCCCCcccceEEEEcCCCCeEEEEecccChhhhhhhccCCCcceeccccccchhc
Q 016922 279 VRVADPTFLGYFIDKGVSAGAKVVRKAYPQEKVGVFVRRGKGGPLTVVEYSELDPSLASAINQETGRLRFCWSNVCLHMF 358 (380)
Q Consensus 279 ~~~~Dp~~lG~~~~~~~d~~~kvv~k~~p~e~vGvl~~~~~~g~~~vvEYsel~~~~~~~~~~~~g~l~f~~gNi~~~~f 358 (380)
...--.++-.+...+.++++-+.+. .+....|++.. + +| .|+++.|-+. .+ +..|+++++|
T Consensus 108 -~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~-d-~~--~v~~~~ek~~---------~~----~~~~~Giy~~ 168 (220)
T cd06426 108 -NLNYEHLLDFHKENNADATVCVREY-EVQVPYGVVET-E-GG--RITSIEEKPT---------HS----FLVNAGIYVL 168 (220)
T ss_pred -ccCHHHHHHHHHhcCCCEEEEEEEc-CCCCcceEEEE-C-CC--EEEEEEECCC---------CC----CeEEEEEEEE
Confidence 3333346666667778877665554 34455676544 2 34 5777765321 11 1246778888
Q ss_pred cHHHHHHHH
Q 016922 359 TLDFLNQVA 367 (380)
Q Consensus 359 ~l~fL~~~~ 367 (380)
+.++++.+.
T Consensus 169 ~~~~~~~i~ 177 (220)
T cd06426 169 EPEVLDLIP 177 (220)
T ss_pred cHHHHhhcC
Confidence 888877653
No 43
>PRK14352 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=98.96 E-value=2.2e-08 Score=104.07 Aligned_cols=188 Identities=16% Similarity=0.150 Sum_probs=115.1
Q ss_pred CEEEEEecCCCccccCCCCCCccccccCCCCCccHHHHHHHHHHHHHHHHhhhcCCCCCCCCceeEEEEcCCCchHHHHH
Q 016922 119 KLAVLLLSGGQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRK 198 (380)
Q Consensus 119 kvavvlLAGG~GTRLg~~~PKg~~~i~l~s~ksllq~~~e~i~~l~~la~~~~~~~~~~~~~~ip~~IMTS~~t~e~t~~ 198 (380)
.+++|+||||.||||+.+.||.++|+ .+||++++.++++.+ .+. -.++|.++ +..+.+.+
T Consensus 4 ~~~avILAaG~gtRm~~~~pK~llpi---~gkpli~~~l~~l~~---------------~g~-~~iivvv~-~~~~~i~~ 63 (482)
T PRK14352 4 PTAVIVLAAGAGTRMRSDTPKVLHTL---AGRSMLGHVLHAAAG---------------LAP-QHLVVVVG-HDRERVAP 63 (482)
T ss_pred CceEEEEcCCCCCcCCCCCCceecee---CCccHHHHHHHHHHh---------------cCC-CcEEEEEC-CCHHHHHH
Confidence 57889999999999998889999999 799999999998764 121 23455554 55678888
Q ss_pred HHhhcCCCCCCCCceEEEEeCCeeeEecCCcccccCCCccccccCCCchhhHHHhhCChHHHHHHCCCeEEEEEcCCCcc
Q 016922 199 YFEGHKYFGLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGVDNAL 278 (380)
Q Consensus 199 ~f~~~~~FGl~~~~V~~f~Q~~~P~~~~~gki~l~~~~~i~~~P~GnGgi~~aL~~~g~l~~l~~~Gi~yi~v~~vDN~L 278 (380)
++++. +. .+.+.. ...|.|.|+..++.. +.+....-++++|++.|+++
T Consensus 64 ~~~~~---~~---~~~~~~---------------------~~~~~Gt~~si~~al-----~~l~~~~~~~vlV~~gD~P~ 111 (482)
T PRK14352 64 AVAEL---AP---EVDIAV---------------------QDEQPGTGHAVQCAL-----EALPADFDGTVVVTAGDVPL 111 (482)
T ss_pred Hhhcc---CC---ccEEEe---------------------CCCCCCcHHHHHHHH-----HHhccCCCCeEEEEeCCeec
Confidence 88642 11 122221 234678777544332 22322234678899999975
Q ss_pred cccCCH-HHHHHHHHhCCceEEEEeecCCCCcccceEEEEcCCCCeEEEEecccChhhhhhhccCCCcceeccccccchh
Q 016922 279 VRVADP-TFLGYFIDKGVSAGAKVVRKAYPQEKVGVFVRRGKGGPLTVVEYSELDPSLASAINQETGRLRFCWSNVCLHM 357 (380)
Q Consensus 279 ~~~~Dp-~~lG~~~~~~~d~~~kvv~k~~p~e~vGvl~~~~~~g~~~vvEYsel~~~~~~~~~~~~g~l~f~~gNi~~~~ 357 (380)
....+- .++-.+...+.++.+-+.+..+| ...|.+... .+|+ |.++.|-+.....+ ......|+++++
T Consensus 112 ~~~~~l~~li~~~~~~~~~~~v~~~~~~~p-~~yg~~~~~-~~g~--V~~~~EKp~~~~~~-------~~~~~~~~Giy~ 180 (482)
T PRK14352 112 LDGETLADLVATHTAEGNAVTVLTTTLDDP-TGYGRILRD-QDGE--VTAIVEQKDATPSQ-------RAIREVNSGVYA 180 (482)
T ss_pred cCHHHHHHHHHHHHhcCCeEEEEEeecCCC-CCCCEEEEC-CCCC--EEEEEECCCCCHHH-------hhcceEEEEEEE
Confidence 322221 23444445566665544444444 567877653 3563 55665544321110 111235888899
Q ss_pred ccHHHHHHHHhc
Q 016922 358 FTLDFLNQVANG 369 (380)
Q Consensus 358 f~l~fL~~~~~~ 369 (380)
|+.+.|+++++.
T Consensus 181 f~~~~l~~~~~~ 192 (482)
T PRK14352 181 FDAAVLRSALAR 192 (482)
T ss_pred EEHHHHHHHHHh
Confidence 999988776543
No 44
>TIGR01208 rmlA_long glucose-1-phosphate thymidylylransferase, long form. Alternate name: dTDP-D-glucose synthase
Probab=98.95 E-value=1.4e-08 Score=101.15 Aligned_cols=177 Identities=22% Similarity=0.297 Sum_probs=117.1
Q ss_pred EEEecCCCccccC---CCCCCccccccCCCCCccHHHHHHHHHHHHHHHHhhhcCCCCCCCCce-eEEEEcCCCchHHHH
Q 016922 122 VLLLSGGQGTRLG---SSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAI-HWYIMTSPFTDDATR 197 (380)
Q Consensus 122 vvlLAGG~GTRLg---~~~PKg~~~i~l~s~ksllq~~~e~i~~l~~la~~~~~~~~~~~~~~i-p~~IMTS~~t~e~t~ 197 (380)
+|+||||.||||+ .+.||.++|+ .+++++++.++.+.+ .+ + ..+|+|.....+.+.
T Consensus 2 aiIlAaG~gtRl~plt~~~pK~l~pv---~g~pli~~~l~~l~~---------------~g--i~~i~vv~~~~~~~~i~ 61 (353)
T TIGR01208 2 ALILAAGKGTRLRPLTFTRPKQLIPV---ANKPILQYAIEDLAE---------------AG--ITDIGIVVGPVTGEEIK 61 (353)
T ss_pred EEEECCcCcCccCccccCCCccccEE---CCEeHHHHHHHHHHH---------------CC--CCEEEEEeCCCCHHHHH
Confidence 6899999999997 4789999999 799999999887763 12 3 345666665899999
Q ss_pred HHHhhcCCCCCCCCceEEEEeCCeeeEecCCcccccCCCccccccCCCchhhHHHhhCChHHHHHHCCCeEEEEEcCCCc
Q 016922 198 KYFEGHKYFGLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGVDNA 277 (380)
Q Consensus 198 ~~f~~~~~FGl~~~~V~~f~Q~~~P~~~~~gki~l~~~~~i~~~P~GnGgi~~aL~~~g~l~~l~~~Gi~yi~v~~vDN~ 277 (380)
+++.+...|+++ +.+..| ..|.|+++.+.+... .+. + +-+.+.+.|++
T Consensus 62 ~~~~~~~~~~~~---~~~~~~---------------------~~~~G~~~al~~a~~-----~l~--~-~~~li~~gD~~ 109 (353)
T TIGR01208 62 EIVGEGERFGAK---ITYIVQ---------------------GEPLGLAHAVYTARD-----FLG--D-DDFVVYLGDNL 109 (353)
T ss_pred HHHhcccccCce---EEEEEC---------------------CCCCCHHHHHHHHHH-----hcC--C-CCEEEEECCee
Confidence 999876666653 333322 247888887765433 221 1 23556678998
Q ss_pred ccccCCHHHHHHHHHhCCceEEEEeecCCCCcccceEEEEcCCCCeEEEEecccChhhhhhhccCCCcceeccccccchh
Q 016922 278 LVRVADPTFLGYFIDKGVSAGAKVVRKAYPQEKVGVFVRRGKGGPLTVVEYSELDPSLASAINQETGRLRFCWSNVCLHM 357 (380)
Q Consensus 278 L~~~~Dp~~lG~~~~~~~d~~~kvv~k~~p~e~vGvl~~~~~~g~~~vvEYsel~~~~~~~~~~~~g~l~f~~gNi~~~~ 357 (380)
+ ...--.++-.+.++++++++-+.+..+| +..|++... +++ .|.++.|-|... . . ...|+++++
T Consensus 110 ~-~~~l~~l~~~~~~~~~d~ti~~~~~~~~-~~~g~~~~~-~~~--~v~~~~ekp~~~-------~--~--~~~~~Giy~ 173 (353)
T TIGR01208 110 I-QDGISRFVKSFEEKDYDALILLTKVRDP-TAFGVAVLE-DGK--RILKLVEKPKEP-------P--S--NLAVVGLYM 173 (353)
T ss_pred c-CccHHHHHHHHHhcCCCcEEEEEECCCh-hhCeEEEEc-CCC--cEEEEEECCCCC-------C--c--cceEEEEEE
Confidence 6 3333347777778888887777665555 567876653 233 455655544311 0 1 235788888
Q ss_pred ccHHHHHHH
Q 016922 358 FTLDFLNQV 366 (380)
Q Consensus 358 f~l~fL~~~ 366 (380)
|+..+++.+
T Consensus 174 ~~~~l~~~l 182 (353)
T TIGR01208 174 FRPLIFEAI 182 (353)
T ss_pred ECHHHHHHH
Confidence 998776655
No 45
>TIGR01099 galU UTP-glucose-1-phosphate uridylyltransferase. Built to distinquish between the highly similar genes galU and galF
Probab=98.94 E-value=1.8e-08 Score=95.72 Aligned_cols=204 Identities=19% Similarity=0.170 Sum_probs=114.1
Q ss_pred EEEEecCCCccccCC---CCCCccccccCCCCCccHHHHHHHHHHHHHHHHhhhcCCCCCCCCceeEEEEcCCCchHHHH
Q 016922 121 AVLLLSGGQGTRLGS---SDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATR 197 (380)
Q Consensus 121 avvlLAGG~GTRLg~---~~PKg~~~i~l~s~ksllq~~~e~i~~l~~la~~~~~~~~~~~~~~ip~~IMTS~~t~e~t~ 197 (380)
.+||||||.||||+. ..||.++|+ .|++++++.++.+.. .+ +.-+++...+..+.+.
T Consensus 2 ~avIlAaG~gtRl~plt~~~pK~llpi---~g~pli~~~l~~l~~---------------~g--i~~v~iv~~~~~~~i~ 61 (260)
T TIGR01099 2 KAVIPAAGLGTRFLPATKAIPKEMLPI---VDKPLIQYVVEEAVE---------------AG--IEDILIVTGRGKRAIE 61 (260)
T ss_pred eEEEEcccCcccCCCcccCCCceeEEE---CCEEHHHHHHHHHHh---------------CC--CCEEEEEeCCcHHHHH
Confidence 479999999999974 789999999 689999999887663 13 3334555556788899
Q ss_pred HHHhhcCCCCCCCCceEEEEeCCeeeEecCCccc---ccCCCccccccCCCchhhHHHhhCChHHHHHHCCCeEEEEEcC
Q 016922 198 KYFEGHKYFGLESDQVTFFQQGTIPCVSKDGRFI---METPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGV 274 (380)
Q Consensus 198 ~~f~~~~~FGl~~~~V~~f~Q~~~P~~~~~gki~---l~~~~~i~~~P~GnGgi~~aL~~~g~l~~l~~~Gi~yi~v~~v 274 (380)
+||.+...++.... .++.+..++. .+.+ ..-.......|.|+|+.+.+... .+ +-+.+.|++.
T Consensus 62 ~~~~~~~~~~~~~~-----~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~G~~~al~~~~~-----~~---~~~~~lv~~g 127 (260)
T TIGR01099 62 DHFDTSYELEHQLE-----KRGKEELLKE-VRSISPLATIFYVRQKEQKGLGHAVLCAEP-----FV---GDEPFAVILG 127 (260)
T ss_pred HHhcccHHHHHHHH-----hhhhHHHHHH-hhhccccceEEEEecCCCCCHHHHHHHHHH-----hh---CCCCEEEEec
Confidence 99974211100000 0000000000 0000 00000112358899987765432 22 3345677789
Q ss_pred CCccccc--CCHHHHHHHHHhCCceE-EEEeecCCCCcccceEEEEcC-CCCeEEEEecccChhhhhhhccCCCcceecc
Q 016922 275 DNALVRV--ADPTFLGYFIDKGVSAG-AKVVRKAYPQEKVGVFVRRGK-GGPLTVVEYSELDPSLASAINQETGRLRFCW 350 (380)
Q Consensus 275 DN~L~~~--~Dp~~lG~~~~~~~d~~-~kvv~k~~p~e~vGvl~~~~~-~g~~~vvEYsel~~~~~~~~~~~~g~l~f~~ 350 (380)
|+++... .--.++-+|.+.++++. ...++... ..+.|++..... ++.-.|+++.|-|... .. .+ +.
T Consensus 128 D~~~~~~~~~~~~l~~~~~~~~~~ii~~~~~~~~~-~~~~g~v~~d~~~~~~~~v~~~~Ekp~~~----~~-~~----~~ 197 (260)
T TIGR01099 128 DDIVVSEEPALKQMIDLYEKYGCSIIAVEEVPKEE-VSKYGVIDGEGVEEGLYEIKDMVEKPKPE----EA-PS----NL 197 (260)
T ss_pred cceecCCcHHHHHHHHHHHHhCCCEEEEEECChhh-cccCceEEeccccCCceeEEEEEECCCCC----CC-CC----ce
Confidence 9987432 12346677777788752 22222222 356788765310 1112577777665310 00 01 23
Q ss_pred ccccchhccHHHHHHHHh
Q 016922 351 SNVCLHMFTLDFLNQVAN 368 (380)
Q Consensus 351 gNi~~~~f~l~fL~~~~~ 368 (380)
.|+++++|+.+.+..+..
T Consensus 198 ~~~Giyi~~~~~~~~l~~ 215 (260)
T TIGR01099 198 AIVGRYVLTPDIFDLLEE 215 (260)
T ss_pred EEEEEEECCHHHHHHHHh
Confidence 688889999988887743
No 46
>PRK14355 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=98.93 E-value=3.6e-08 Score=101.72 Aligned_cols=185 Identities=18% Similarity=0.199 Sum_probs=118.3
Q ss_pred CEEEEEecCCCccccCCCCCCccccccCCCCCccHHHHHHHHHHHHHHHHhhhcCCCCCCCCceeEEEEcCCCchHHHHH
Q 016922 119 KLAVLLLSGGQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRK 198 (380)
Q Consensus 119 kvavvlLAGG~GTRLg~~~PKg~~~i~l~s~ksllq~~~e~i~~l~~la~~~~~~~~~~~~~~ip~~IMTS~~t~e~t~~ 198 (380)
++.+|+||||.||||+...||.+.|+ .++|++++.++++.+ .+ +.-+++...+..+.+.+
T Consensus 3 ~~~avIlAaG~g~Rl~~~~pK~l~pi---~g~pli~~~l~~l~~---------------~g--i~~iiiv~~~~~~~i~~ 62 (459)
T PRK14355 3 NLAAIILAAGKGTRMKSDLVKVMHPL---AGRPMVSWPVAAARE---------------AG--AGRIVLVVGHQAEKVRE 62 (459)
T ss_pred cceEEEEcCCCCcccCCCCCceecee---CCccHHHHHHHHHHh---------------cC--CCeEEEEECCCHHHHHH
Confidence 57889999999999998889999999 789999998887763 12 33345555566788888
Q ss_pred HHhhcCCCCCCCCceEEEEeCCeeeEecCCcccccCCCccccccCCCchhhHHHhhCChHHHHHHCCCeEEEEEcCCCcc
Q 016922 199 YFEGHKYFGLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGVDNAL 278 (380)
Q Consensus 199 ~f~~~~~FGl~~~~V~~f~Q~~~P~~~~~gki~l~~~~~i~~~P~GnGgi~~aL~~~g~l~~l~~~Gi~yi~v~~vDN~L 278 (380)
+|.+.. .+.+.. ...|.|+|+.+.+.. +.+. ..-+++++.+.|+++
T Consensus 63 ~~~~~~-------~i~~~~---------------------~~~~~Gt~~al~~a~-----~~l~-~~~~~vlv~~gD~p~ 108 (459)
T PRK14355 63 HFAGDG-------DVSFAL---------------------QEEQLGTGHAVACAA-----PALD-GFSGTVLILCGDVPL 108 (459)
T ss_pred HhccCC-------ceEEEe---------------------cCCCCCHHHHHHHHH-----HHhh-ccCCcEEEEECCccC
Confidence 886421 233322 123668887665432 2232 224689999999975
Q ss_pred cccCC-HHHHHHHHHhCCceEEEEeecCCCCcccceEEEEcCCCCeEEEEecccChhhhhhhccCCCcceeccccccchh
Q 016922 279 VRVAD-PTFLGYFIDKGVSAGAKVVRKAYPQEKVGVFVRRGKGGPLTVVEYSELDPSLASAINQETGRLRFCWSNVCLHM 357 (380)
Q Consensus 279 ~~~~D-p~~lG~~~~~~~d~~~kvv~k~~p~e~vGvl~~~~~~g~~~vvEYsel~~~~~~~~~~~~g~l~f~~gNi~~~~ 357 (380)
....| -.++-.+...++++++...+..+| ...|++... .+| .|+++.|-++..... . ..+..|+++++
T Consensus 109 ~~~~~i~~l~~~~~~~~~~~~v~~~~~~~~-~~~g~v~~d-~~g--~v~~~~ek~~~~~~~---~----~~~~~~~Giy~ 177 (459)
T PRK14355 109 LRAETLQGMLAAHRATGAAVTVLTARLENP-FGYGRIVRD-ADG--RVLRIVEEKDATPEE---R----SIREVNSGIYC 177 (459)
T ss_pred cCHHHHHHHHHHHHhcCCcEEEEEEEcCCC-CcCCEEEEc-CCC--CEEEEEEcCCCChhH---h----hccEEEEEEEE
Confidence 33233 335556666677777666555555 567887653 345 466766544311110 0 11236888999
Q ss_pred ccHHHHHHHHh
Q 016922 358 FTLDFLNQVAN 368 (380)
Q Consensus 358 f~l~fL~~~~~ 368 (380)
|+.++|.+++.
T Consensus 178 ~~~~~l~~~l~ 188 (459)
T PRK14355 178 VEAAFLFDAIG 188 (459)
T ss_pred EeHHHHHHHHH
Confidence 99988766554
No 47
>cd02540 GT2_GlmU_N_bac N-terminal domain of bacterial GlmU. The N-terminal domain of N-Acetylglucosamine-1-phosphate uridyltransferase (GlmU). GlmU is an essential bacterial enzyme with both an acetyltransferase and an uridyltransferase activity which have been mapped to the C-terminal and N-terminal domains, respectively. This family represents the N-terminal uridyltransferase. GlmU performs the last two steps in the synthesis of UDP-N-acetylglucosamine (UDP-GlcNAc), which is an essential precursor in both the peptidoglycan and the lipopolysaccharide metabolic pathways in Gram-positive and Gram-negative bacteria, respectively.
Probab=98.91 E-value=5.4e-08 Score=90.20 Aligned_cols=181 Identities=17% Similarity=0.181 Sum_probs=109.1
Q ss_pred EEEecCCCccccCCCCCCccccccCCCCCccHHHHHHHHHHHHHHHHhhhcCCCCCCCCceeEEEEcCCCchHHHHHHHh
Q 016922 122 VLLLSGGQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRKYFE 201 (380)
Q Consensus 122 vvlLAGG~GTRLg~~~PKg~~~i~l~s~ksllq~~~e~i~~l~~la~~~~~~~~~~~~~~ip~~IMTS~~t~e~t~~~f~ 201 (380)
+|+||||.||||+...||.+.|+ .|||++++.++.+.. .++ -..+|.|+ +.++.+.+++.
T Consensus 1 aiIlaaG~g~R~~~~~pK~l~~v---~gkpli~~~i~~l~~---------------~~i-~~i~iv~~-~~~~~i~~~~~ 60 (229)
T cd02540 1 AVILAAGKGTRMKSDLPKVLHPL---AGKPMLEHVLDAARA---------------LGP-DRIVVVVG-HGAEQVKKALA 60 (229)
T ss_pred CEEEeCCCCccCCCCCChhccee---CCccHHHHHHHHHHh---------------CCC-CeEEEEEC-CCHHHHHHHhC
Confidence 48999999999998789999999 799999998888764 121 13455554 44888888887
Q ss_pred hcCCCCCCCCceEEEEeCCeeeEecCCcccccCCCccccccCCCchhhHHHhhCChHHHHHHCCCeEEEEEcCCCccccc
Q 016922 202 GHKYFGLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGVDNALVRV 281 (380)
Q Consensus 202 ~~~~FGl~~~~V~~f~Q~~~P~~~~~gki~l~~~~~i~~~P~GnGgi~~aL~~~g~l~~l~~~Gi~yi~v~~vDN~L~~~ 281 (380)
+ ++ +.++.| ..+.|.++...... +.+ +.+.+++++.+.|+++...
T Consensus 61 ~---~~-----~~~~~~---------------------~~~~g~~~ai~~a~-----~~~-~~~~~~vli~~~D~p~~~~ 105 (229)
T cd02540 61 N---PN-----VEFVLQ---------------------EEQLGTGHAVKQAL-----PAL-KDFEGDVLVLYGDVPLITP 105 (229)
T ss_pred C---CC-----cEEEEC---------------------CCCCCCHHHHHHHH-----Hhh-ccCCCeEEEEeCCccccCH
Confidence 5 22 233322 12457776555432 222 2235789999999975321
Q ss_pred CCH-HHHHHHHHhCCceEEEEeecCCCCcccceEEEEcCCCCeEEEEecccChhhhhhhccCCCcceeccccccchhccH
Q 016922 282 ADP-TFLGYFIDKGVSAGAKVVRKAYPQEKVGVFVRRGKGGPLTVVEYSELDPSLASAINQETGRLRFCWSNVCLHMFTL 360 (380)
Q Consensus 282 ~Dp-~~lG~~~~~~~d~~~kvv~k~~p~e~vGvl~~~~~~g~~~vvEYsel~~~~~~~~~~~~g~l~f~~gNi~~~~f~l 360 (380)
.+- .++-.+.+.++++++-+.+..+| ...|.+... .+| .|+++.+-+...... + . ....|+++++|+.
T Consensus 106 ~~i~~l~~~~~~~~~~~~~~~~~~~~p-~~~~~~~~~-~~~--~v~~~~ek~~~~~~~--~----~-~~~~~~giy~~~~ 174 (229)
T cd02540 106 ETLQRLLEAHREAGADVTVLTAELEDP-TGYGRIIRD-GNG--KVLRIVEEKDATEEE--K----A-IREVNAGIYAFDA 174 (229)
T ss_pred HHHHHHHHHHHhcCCcEEEEEEEcCCC-CCccEEEEc-CCC--CEEEEEECCCCChHH--H----h-hceEEeEEEEEEH
Confidence 111 12333444567777666666555 456776553 345 366665433211000 0 0 1235888899998
Q ss_pred HHHHHHHh
Q 016922 361 DFLNQVAN 368 (380)
Q Consensus 361 ~fL~~~~~ 368 (380)
+.+.++++
T Consensus 175 ~~~~~~l~ 182 (229)
T cd02540 175 EFLFEALP 182 (229)
T ss_pred HHHHHHHH
Confidence 76655444
No 48
>PRK13389 UTP--glucose-1-phosphate uridylyltransferase subunit GalU; Provisional
Probab=98.89 E-value=4.9e-08 Score=95.93 Aligned_cols=204 Identities=16% Similarity=0.135 Sum_probs=119.5
Q ss_pred hcCCCEEEEEecCCCccccCC---CCCCccccccCCCCCccHHHHHHHHHHHHHHHHhhhcCCCCCCCCceeEEEEcCCC
Q 016922 115 ISDGKLAVLLLSGGQGTRLGS---SDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPF 191 (380)
Q Consensus 115 i~~gkvavvlLAGG~GTRLg~---~~PKg~~~i~l~s~ksllq~~~e~i~~l~~la~~~~~~~~~~~~~~ip~~IMTS~~ 191 (380)
|..+=+.+|++|||.||||+. ..||.+.|+ .|++++++.++.+.. .+ |--++....+
T Consensus 4 ~~~~~~~aiIlaaG~g~Rl~~~t~~~pK~l~pv---~g~pii~~~l~~l~~---------------~g--i~~i~vv~~~ 63 (302)
T PRK13389 4 INTKVKKAVIPVAGLGTRMLPATKAIPKEMLPL---VDKPLIQYVVNECIA---------------AG--ITEIVLVTHS 63 (302)
T ss_pred ccccceEEEEECCcCCccCCCccCCCCceeeEE---CCEEHHHHHHHHHHH---------------CC--CCEEEEEeCC
Confidence 333335689999999999974 689999999 899999999998764 12 4456677778
Q ss_pred chHHHHHHHhhcCCCC--CCCC-ceEEEEeCCeeeEecCCcccccCC----CccccccCCCchhhHHHhhCChHHHHHHC
Q 016922 192 TDDATRKYFEGHKYFG--LESD-QVTFFQQGTIPCVSKDGRFIMETP----YKVAKAPDGNGGVYSALKSSKLLEDMATR 264 (380)
Q Consensus 192 t~e~t~~~f~~~~~FG--l~~~-~V~~f~Q~~~P~~~~~gki~l~~~----~~i~~~P~GnGgi~~aL~~~g~l~~l~~~ 264 (380)
..+.+.+||.....++ ++.. +..+ .+ +.+.++... ......|.|+|+.+..... +.
T Consensus 64 ~~~~i~~~~~~~~~~~~~l~~~~~~~~-~~--------e~~~i~~~~~~i~~~~q~~~~Gtg~Av~~a~~------~~-- 126 (302)
T PRK13389 64 SKNSIENHFDTSFELEAMLEKRVKRQL-LD--------EVQSICPPHVTIMQVRQGLAKGLGHAVLCAHP------VV-- 126 (302)
T ss_pred CHHHHHHHHccchhhhhhhhhhhhhHH-HH--------hhhhccccCceEEEeecCCCCChHHHHHHHHH------Hc--
Confidence 8899999997532222 1100 0000 00 000000000 1122568999998775432 21
Q ss_pred CCeEEEEEcCCCccc-------ccCCHHHHHHHHHhCCceEEEEeecCCCCcccceEEEEc---CCC-CeEEEEecccCh
Q 016922 265 GIKYIDCYGVDNALV-------RVADPTFLGYFIDKGVSAGAKVVRKAYPQEKVGVFVRRG---KGG-PLTVVEYSELDP 333 (380)
Q Consensus 265 Gi~yi~v~~vDN~L~-------~~~Dp~~lG~~~~~~~d~~~kvv~k~~p~e~vGvl~~~~---~~g-~~~vvEYsel~~ 333 (380)
+-+-++|.+.||++. ...--.++-+|.+.+++. +-+.+... ..+.|++...+ .+| .-.|+++.|-|.
T Consensus 127 ~~~~~lVl~gD~~~~~~~~~~~~~dl~~l~~~h~~~~~~t-l~~~~~~~-~~~yGvv~~~~~~~~~~~~~~V~~~~EKp~ 204 (302)
T PRK13389 127 GDEPVAVILPDVILDEYESDLSQDNLAEMIRRFDETGHSQ-IMVEPVAD-VTAYGVVDCKGVELAPGESVPMVGVVEKPK 204 (302)
T ss_pred CCCCEEEEeCcceecccccccccccHHHHHHHHHhcCCCE-EEEEEccc-CCcceEEEecCcccccCCcceEEEEEECCC
Confidence 223467778999862 122234777777777763 43444434 36779987631 011 125667766554
Q ss_pred hhhhhhccCCCcceeccccccchhccHHHHHHH
Q 016922 334 SLASAINQETGRLRFCWSNVCLHMFTLDFLNQV 366 (380)
Q Consensus 334 ~~~~~~~~~~g~l~f~~gNi~~~~f~l~fL~~~ 366 (380)
... ... +..|+++++|+.+.++.+
T Consensus 205 ~~~-------~~s--~~~~~GiYi~~~~il~~l 228 (302)
T PRK13389 205 ADV-------APS--NLAIVGRYVLSADIWPLL 228 (302)
T ss_pred CCC-------CCc--cEEEEEEEEECHHHHHHH
Confidence 210 011 236888999998887544
No 49
>PRK14353 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=98.86 E-value=6.1e-08 Score=99.37 Aligned_cols=183 Identities=18% Similarity=0.157 Sum_probs=112.9
Q ss_pred CCEEEEEecCCCccccCCCCCCccccccCCCCCccHHHHHHHHHHHHHHHHhhhcCCCCCCCCceeEEEEcCCCchHHHH
Q 016922 118 GKLAVLLLSGGQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATR 197 (380)
Q Consensus 118 gkvavvlLAGG~GTRLg~~~PKg~~~i~l~s~ksllq~~~e~i~~l~~la~~~~~~~~~~~~~~ip~~IMTS~~t~e~t~ 197 (380)
.++.+|+||||.||||+.+.||.+.|+ .|||++++.++.+.+ .+ +.-+++...+.++.+.
T Consensus 4 ~~~~aiILAaG~gsR~~~~~pK~ll~v---~gkpli~~~l~~l~~---------------~g--i~~ivvv~~~~~~~i~ 63 (446)
T PRK14353 4 RTCLAIILAAGEGTRMKSSLPKVLHPV---AGRPMLAHVLAAAAS---------------LG--PSRVAVVVGPGAEAVA 63 (446)
T ss_pred ccceEEEEcCCCCCccCCCCCcccCEE---CCchHHHHHHHHHHh---------------CC--CCcEEEEECCCHHHHH
Confidence 368899999999999998789999999 899999999998764 12 3334444456778888
Q ss_pred HHHhhcCCCCCCCCceEEEEeCCeeeEecCCcccccCCCccccccCCCchhhHHHhhCChHHHHHHCCCeEEEEEcCCCc
Q 016922 198 KYFEGHKYFGLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGVDNA 277 (380)
Q Consensus 198 ~~f~~~~~FGl~~~~V~~f~Q~~~P~~~~~gki~l~~~~~i~~~P~GnGgi~~aL~~~g~l~~l~~~Gi~yi~v~~vDN~ 277 (380)
+++.+ ++. .+.++.| ..|.|.++...+.. +.+. .+-+++++.+.|.+
T Consensus 64 ~~~~~---~~~---~~~~~~~---------------------~~~~G~~~sl~~a~-----~~l~-~~~~~~lv~~~D~P 110 (446)
T PRK14353 64 AAAAK---IAP---DAEIFVQ---------------------KERLGTAHAVLAAR-----EALA-GGYGDVLVLYGDTP 110 (446)
T ss_pred HHhhc---cCC---CceEEEc---------------------CCCCCcHHHHHHHH-----HHHh-ccCCCEEEEeCCcc
Confidence 88864 221 1222221 23567766554332 2232 23467888899997
Q ss_pred ccccCCHHHHHHH---HHhCCceEEEEeecCCCCcccceEEEEcCCCCeEEEEecccChhhhhhhccCCCcceecccccc
Q 016922 278 LVRVADPTFLGYF---IDKGVSAGAKVVRKAYPQEKVGVFVRRGKGGPLTVVEYSELDPSLASAINQETGRLRFCWSNVC 354 (380)
Q Consensus 278 L~~~~Dp~~lG~~---~~~~~d~~~kvv~k~~p~e~vGvl~~~~~~g~~~vvEYsel~~~~~~~~~~~~g~l~f~~gNi~ 354 (380)
+. ++..+-.. .+.++++.+.+.+..++ .++|.+.. ++| .|+++.|-++....+ ... ...|++
T Consensus 111 ~i---~~~~l~~l~~~~~~~~~~~i~~~~~~~~-~~~g~~~~--~~g--~v~~~~ek~~~~~~~-----~~~--~~~~~G 175 (446)
T PRK14353 111 LI---TAETLARLRERLADGADVVVLGFRAADP-TGYGRLIV--KGG--RLVAIVEEKDASDEE-----RAI--TLCNSG 175 (446)
T ss_pred cC---CHHHHHHHHHhHhcCCcEEEEEEEeCCC-CcceEEEE--CCC--eEEEEEECCCCChHH-----hhc--eEEEEE
Confidence 53 44444332 34566776666665544 57787665 255 467777654321111 001 135778
Q ss_pred chhccHHHHHHHHh
Q 016922 355 LHMFTLDFLNQVAN 368 (380)
Q Consensus 355 ~~~f~l~fL~~~~~ 368 (380)
+++|+.+.+.++.+
T Consensus 176 iy~~~~~~l~~~l~ 189 (446)
T PRK14353 176 VMAADGADALALLD 189 (446)
T ss_pred EEEEEHHHHHHHHH
Confidence 88888866655543
No 50
>PRK14360 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=98.86 E-value=8.4e-08 Score=98.37 Aligned_cols=186 Identities=19% Similarity=0.157 Sum_probs=112.5
Q ss_pred EEEEEecCCCccccCCCCCCccccccCCCCCccHHHHHHHHHHHHHHHHhhhcCCCCCCCCceeEEEEcCCCchHHHHHH
Q 016922 120 LAVLLLSGGQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRKY 199 (380)
Q Consensus 120 vavvlLAGG~GTRLg~~~PKg~~~i~l~s~ksllq~~~e~i~~l~~la~~~~~~~~~~~~~~ip~~IMTS~~t~e~t~~~ 199 (380)
+++|+||||.||||+.+.||.|+|+ .+|+++++.++++.+ .+. ...+|.+. +..+.+.++
T Consensus 2 ~~~iIlAaG~gsR~~~~~pK~ll~v---~gkpli~~~l~~l~~---------------~g~-~~iivvv~-~~~~~i~~~ 61 (450)
T PRK14360 2 LAVAILAAGKGTRMKSSLPKVLHPL---GGKSLVERVLDSCEE---------------LKP-DRRLVIVG-HQAEEVEQS 61 (450)
T ss_pred ceEEEEeCCCCccCCCCCChhcCEE---CChhHHHHHHHHHHh---------------CCC-CeEEEEEC-CCHHHHHHH
Confidence 6789999999999998889999999 899999999998764 121 13344444 556678888
Q ss_pred HhhcCCCCCCCCceEEEEeCCeeeEecCCcccccCCCccccccCCCchhhHHHhhCChHHHHHHCCCeEEEEEcCCCccc
Q 016922 200 FEGHKYFGLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGVDNALV 279 (380)
Q Consensus 200 f~~~~~FGl~~~~V~~f~Q~~~P~~~~~gki~l~~~~~i~~~P~GnGgi~~aL~~~g~l~~l~~~Gi~yi~v~~vDN~L~ 279 (380)
++++. .+.+..| ..+.|.++.+.... +.+.. .-++++|...|.++.
T Consensus 62 ~~~~~-------~i~~v~~---------------------~~~~G~~~sv~~~~-----~~l~~-~~~~vlV~~~D~P~i 107 (450)
T PRK14360 62 LAHLP-------GLEFVEQ---------------------QPQLGTGHAVQQLL-----PVLKG-FEGDLLVLNGDVPLL 107 (450)
T ss_pred hcccC-------CeEEEEe---------------------CCcCCcHHHHHHHH-----HHhhc-cCCcEEEEeCCcccc
Confidence 86421 2333221 13567776655432 22321 124678889999763
Q ss_pred ccCC-HHHHHHHHHhCCceEEEEeecCCCCcccceEEEEcCCCCeEEEEecccChhhhhhhccCCCcceeccccccchhc
Q 016922 280 RVAD-PTFLGYFIDKGVSAGAKVVRKAYPQEKVGVFVRRGKGGPLTVVEYSELDPSLASAINQETGRLRFCWSNVCLHMF 358 (380)
Q Consensus 280 ~~~D-p~~lG~~~~~~~d~~~kvv~k~~p~e~vGvl~~~~~~g~~~vvEYsel~~~~~~~~~~~~g~l~f~~gNi~~~~f 358 (380)
...+ -.++-.+.+.++++++-+.+..+| ...|.+.. +++| .|+++.|-+....... .+ +..|+++++|
T Consensus 108 ~~~~l~~ll~~~~~~~~~~~~~~~~~~~~-~~~g~~~~-d~~g--~v~~~~ek~~~~~~~~---~~----~~~~~Giy~f 176 (450)
T PRK14360 108 RPETLEALLNTHRSSNADVTLLTARLPNP-KGYGRVFC-DGNN--LVEQIVEDRDCTPAQR---QN----NRINAGIYCF 176 (450)
T ss_pred CHHHHHHHHHHHHhcCCcEEEEEEecCCC-CCccEEEE-CCCC--CEEEEEECCCCChhHh---cC----cEEEEEEEEE
Confidence 2111 123444555667776544444444 44687654 3355 4566655443211111 11 1357888999
Q ss_pred cHHHHHHHHhcc
Q 016922 359 TLDFLNQVANGL 370 (380)
Q Consensus 359 ~l~fL~~~~~~~ 370 (380)
+.+.|.++.+.+
T Consensus 177 ~~~~l~~~~~~~ 188 (450)
T PRK14360 177 NWPALAEVLPKL 188 (450)
T ss_pred EHHHHHHHHhhc
Confidence 998888876543
No 51
>cd02508 ADP_Glucose_PP ADP-glucose pyrophosphorylase is involved in the biosynthesis of glycogen or starch. ADP-glucose pyrophosphorylase (glucose-1-phosphate adenylyltransferase) catalyzes a very important step in the biosynthesis of alpha 1,4-glucans (glycogen or starch) in bacteria and plants: synthesis of the activated glucosyl donor, ADP-glucose, from glucose-1-phosphate and ATP. ADP-glucose pyrophosphorylase is a tetrameric allosterically regulated enzyme. While a homotetramer in bacteria, in plant chloroplasts and amyloplasts, it is a heterotetramer of two different, yet evolutionary related, subunits. There are a number of conserved regions in the sequence of bacterial and plant ADP-glucose pyrophosphorylase subunits. It is a subfamily of a very diverse glycosy transferase family 2.
Probab=98.85 E-value=7.7e-08 Score=88.20 Aligned_cols=139 Identities=15% Similarity=0.239 Sum_probs=92.2
Q ss_pred EEEecCCCccccC---CCCCCccccccCCCCC-ccHHHHHHHHHHHHHHHHhhhcCCCCCCCCceeEEEEcCCCchHHHH
Q 016922 122 VLLLSGGQGTRLG---SSDPKGCVNIGLPSGK-SLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATR 197 (380)
Q Consensus 122 vvlLAGG~GTRLg---~~~PKg~~~i~l~s~k-sllq~~~e~i~~l~~la~~~~~~~~~~~~~~ip~~IMTS~~t~e~t~ 197 (380)
+|+||||.||||. .+.||.|+|+ .++ |++++.++.+.. .+ +--++....+..+.+.
T Consensus 1 avILAaG~gtRl~plt~~~pK~llpv---~g~~pli~~~l~~l~~---------------~g--i~~iivv~~~~~~~i~ 60 (200)
T cd02508 1 AIILAGGEGTRLSPLTKKRAKPAVPF---GGRYRLIDFPLSNMVN---------------SG--IRNVGVLTQYKSRSLN 60 (200)
T ss_pred CEEeCCCCCcccchhhcCCcceeeEE---CCeeeeHHHHHHHHHH---------------CC--CCEEEEEeCCChHHHH
Confidence 4899999999997 4789999999 788 999999998764 13 3334444556689999
Q ss_pred HHHhhcCCCCCCCC--ceEEEEeCCeeeEecCCcccccCCCccccccCCCchhhHHHhhCChHHHHHHCCCeEEEEEcCC
Q 016922 198 KYFEGHKYFGLESD--QVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGVD 275 (380)
Q Consensus 198 ~~f~~~~~FGl~~~--~V~~f~Q~~~P~~~~~gki~l~~~~~i~~~P~GnGgi~~aL~~~g~l~~l~~~Gi~yi~v~~vD 275 (380)
++|.+...||++.. .+.+.. .........|.|+|+....... .+....-+.++|.+.|
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~Gta~al~~a~~-----~i~~~~~~~~lv~~gD 120 (200)
T cd02508 61 DHLGSGKEWDLDRKNGGLFILP---------------PQQRKGGDWYRGTADAIYQNLD-----YIERSDPEYVLILSGD 120 (200)
T ss_pred HHHhCCCcccCCCCCCCEEEeC---------------cccCCCCCcccCcHHHHHHHHH-----HHHhCCCCEEEEecCC
Confidence 99987666776521 122210 0000023568999998776532 3333334778899999
Q ss_pred CcccccCCHHHHHHHHHhCCceEEEE
Q 016922 276 NALVRVADPTFLGYFIDKGVSAGAKV 301 (380)
Q Consensus 276 N~L~~~~Dp~~lG~~~~~~~d~~~kv 301 (380)
++. ...--.++-++.+++.++++-+
T Consensus 121 ~v~-~~~~~~~l~~~~~~~~~~t~~~ 145 (200)
T cd02508 121 HIY-NMDYREMLDFHIESGADITVVY 145 (200)
T ss_pred EEE-ecCHHHHHHHHHHcCCCEEEEE
Confidence 964 3333346777777777776543
No 52
>PRK14357 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=98.82 E-value=8.4e-08 Score=98.40 Aligned_cols=177 Identities=20% Similarity=0.207 Sum_probs=112.9
Q ss_pred EEEEecCCCccccCCCCCCccccccCCCCCccHHHHHHHHHHHHHHHHhhhcCCCCCCCCceeEEEEcCCCchHHHHHHH
Q 016922 121 AVLLLSGGQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRKYF 200 (380)
Q Consensus 121 avvlLAGG~GTRLg~~~PKg~~~i~l~s~ksllq~~~e~i~~l~~la~~~~~~~~~~~~~~ip~~IMTS~~t~e~t~~~f 200 (380)
.+|+||||.||||+.+.||.|.|+ .+|+++++.++.+.. .. -..+|.+ .+..+.+.+++
T Consensus 2 ~avIlA~G~gtRl~~~~pK~l~~v---~gkpli~~~l~~l~~---------------~~--~~i~vv~-~~~~~~i~~~~ 60 (448)
T PRK14357 2 RALVLAAGKGTRMKSKIPKVLHKI---SGKPMINWVIDTAKK---------------VA--QKVGVVL-GHEAELVKKLL 60 (448)
T ss_pred eEEEECCCCCccCCCCCCceeeEE---CCeeHHHHHHHHHHh---------------cC--CcEEEEe-CCCHHHHHHhc
Confidence 579999999999998889999999 799999999987663 11 1234444 45567777776
Q ss_pred hhcCCCCCCCCceEEEEeCCeeeEecCCcccccCCCccccccCCCchhhHHHhhCChHHHHHHCCCeEEEEEcCCCcccc
Q 016922 201 EGHKYFGLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGVDNALVR 280 (380)
Q Consensus 201 ~~~~~FGl~~~~V~~f~Q~~~P~~~~~gki~l~~~~~i~~~P~GnGgi~~aL~~~g~l~~l~~~Gi~yi~v~~vDN~L~~ 280 (380)
.+ .+.++.| ..|.|.++.+..... .+. .-+++++.+.|+++..
T Consensus 61 ~~---------~~~~~~~---------------------~~~~g~~~ai~~a~~-----~l~--~~~~vlv~~gD~p~i~ 103 (448)
T PRK14357 61 PE---------WVKIFLQ---------------------EEQLGTAHAVMCARD-----FIE--PGDDLLILYGDVPLIS 103 (448)
T ss_pred cc---------ccEEEec---------------------CCCCChHHHHHHHHH-----hcC--cCCeEEEEeCCcccCC
Confidence 53 1223322 236687776654432 221 1368999999997533
Q ss_pred cCC-HHHHHHHHHhCCceEEEEeecCCCCcccceEEEEcCCCCeEEEEecccChhhhhhhccCCCcceeccccccchhcc
Q 016922 281 VAD-PTFLGYFIDKGVSAGAKVVRKAYPQEKVGVFVRRGKGGPLTVVEYSELDPSLASAINQETGRLRFCWSNVCLHMFT 359 (380)
Q Consensus 281 ~~D-p~~lG~~~~~~~d~~~kvv~k~~p~e~vGvl~~~~~~g~~~vvEYsel~~~~~~~~~~~~g~l~f~~gNi~~~~f~ 359 (380)
..| -.++-++.+.++++++.+.+..+| ...|.+... +|+..++|....+.... ..+..|.++++|+
T Consensus 104 ~~~i~~l~~~~~~~~~d~ti~~~~~~~~-~~~g~v~~d--~g~v~~~e~~~~~~~~~----------~~~~~~~GiYv~~ 170 (448)
T PRK14357 104 ENTLKRLIEEHNRKGADVTILVADLEDP-TGYGRIIRD--GGKYRIVEDKDAPEEEK----------KIKEINTGIYVFS 170 (448)
T ss_pred HHHHHHHHHHHHhcCCeEEEEEEEcCCC-CCcEEEEEc--CCeEEEEECCCCChHHh----------cCcEEEeEEEEEE
Confidence 223 225666667788887777665554 567887543 56555566432221110 0123688899999
Q ss_pred HHHHHHHHh
Q 016922 360 LDFLNQVAN 368 (380)
Q Consensus 360 l~fL~~~~~ 368 (380)
.++|.+++.
T Consensus 171 ~~~l~~~~~ 179 (448)
T PRK14357 171 GDFLLEVLP 179 (448)
T ss_pred HHHHHHHHH
Confidence 998777654
No 53
>cd02541 UGPase_prokaryotic Prokaryotic UGPase catalyses the synthesis of UDP-glucose. Prokaryotic UDP-Glucose Pyrophosphorylase (UGPase) catalyzes a reversible production of UDP-Glucose and pyrophosphate (PPi) from glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids , glycoproteins , and proteoglycans. UGPase is found in both prokaryotes and eukaryotes, although prokaryotic and eukaryotic forms of UGPase catalyze the same reaction, they share low sequence similarity.
Probab=98.81 E-value=6.8e-08 Score=92.27 Aligned_cols=200 Identities=18% Similarity=0.179 Sum_probs=112.8
Q ss_pred EEEEecCCCccccC---CCCCCccccccCCCCCccHHHHHHHHHHHHHHHHhhhcCCCCCCCCceeEEEEcCCCchHHHH
Q 016922 121 AVLLLSGGQGTRLG---SSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATR 197 (380)
Q Consensus 121 avvlLAGG~GTRLg---~~~PKg~~~i~l~s~ksllq~~~e~i~~l~~la~~~~~~~~~~~~~~ip~~IMTS~~t~e~t~ 197 (380)
-+||||||.||||+ ...||++.|+ .|++++++.++.+.+ .+ +.-+++...+..+.+.
T Consensus 2 kaiIlAaG~gtRl~plt~~~pK~llpv---~gkpli~~~l~~l~~---------------~g--i~~i~iv~~~~~~~i~ 61 (267)
T cd02541 2 KAVIPAAGLGTRFLPATKAIPKEMLPI---VDKPVIQYIVEEAVA---------------AG--IEDIIIVTGRGKRAIE 61 (267)
T ss_pred eEEEEcCCCCccCCCcccCCCceeeEE---CCEEHHHHHHHHHHH---------------CC--CCEEEEEeCCchHHHH
Confidence 47999999999997 3689999999 789999999997763 13 4345666667888899
Q ss_pred HHHhhcCCCCCCC-----CceEEEE-eCCeeeEecCCcccccCCCccccccCCCchhhHHHhhCChHHHHHHCCCeEEEE
Q 016922 198 KYFEGHKYFGLES-----DQVTFFQ-QGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDC 271 (380)
Q Consensus 198 ~~f~~~~~FGl~~-----~~V~~f~-Q~~~P~~~~~gki~l~~~~~i~~~P~GnGgi~~aL~~~g~l~~l~~~Gi~yi~v 271 (380)
+||.+.. +++. ....++. =..+| ..-.+ .......|.|+|+.+.+..+ .+ . + +.+.|
T Consensus 62 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~---~~~~i----~~~~~~~~~Gt~~al~~~~~-----~i-~-~-~~~lv 124 (267)
T cd02541 62 DHFDRSY--ELEETLEKKGKTDLLEEVRIIS---DLANI----HYVRQKEPLGLGHAVLCAKP-----FI-G-D-EPFAV 124 (267)
T ss_pred HHhCCcH--HHHHHHHhcccHHHhhhhhccc---CCceE----EEEEcCCCCChHHHHHHHHH-----Hh-C-C-CceEE
Confidence 9996521 1110 0000000 00000 00000 01123457899887765432 22 2 1 45677
Q ss_pred EcCCCcccccCC---HHHHHHHHHhCCceE-EEEeecCCCCcccceEEEEcCCC-CeEEEEecccChhhhhhhccCCCcc
Q 016922 272 YGVDNALVRVAD---PTFLGYFIDKGVSAG-AKVVRKAYPQEKVGVFVRRGKGG-PLTVVEYSELDPSLASAINQETGRL 346 (380)
Q Consensus 272 ~~vDN~L~~~~D---p~~lG~~~~~~~d~~-~kvv~k~~p~e~vGvl~~~~~~g-~~~vvEYsel~~~~~~~~~~~~g~l 346 (380)
.+.|+++. ..| -.++-.|...++++. ...++... ..+.|++.....+| ...|.++.|-|.... + .+
T Consensus 125 ~~gD~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~g~v~~d~~~~~~~~v~~~~Ekp~~~~----~-~~-- 195 (267)
T cd02541 125 LLGDDLID-SKEPCLKQLIEAYEKTGASVIAVEEVPPED-VSKYGIVKGEKIDGDVFKVKGLVEKPKPEE----A-PS-- 195 (267)
T ss_pred EECCeEEe-CCchHHHHHHHHHHHhCCCEEEEEEcChhc-CccceEEEeecCCCCceEEeEEEECCCCCC----C-CC--
Confidence 78999853 332 246666666666642 22222112 35678876542112 235677776543210 0 01
Q ss_pred eeccccccchhccHHHHHHHHh
Q 016922 347 RFCWSNVCLHMFTLDFLNQVAN 368 (380)
Q Consensus 347 ~f~~gNi~~~~f~l~fL~~~~~ 368 (380)
+..|+++++|+.+++..+.+
T Consensus 196 --~~~~~Giyi~~~~~~~~l~~ 215 (267)
T cd02541 196 --NLAIVGRYVLTPDIFDILEN 215 (267)
T ss_pred --ceEEEEEEEcCHHHHHHHHh
Confidence 23578889999998877743
No 54
>PRK05450 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional
Probab=98.81 E-value=1e-07 Score=89.71 Aligned_cols=183 Identities=16% Similarity=0.205 Sum_probs=110.2
Q ss_pred CEEEEEecCCCccccCCCCCCccccccCCCCCccHHHHHHHHHHHHHHHHhhhcCCCCCCCCceeEEEEcCCCchHHHHH
Q 016922 119 KLAVLLLSGGQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRK 198 (380)
Q Consensus 119 kvavvlLAGG~GTRLg~~~PKg~~~i~l~s~ksllq~~~e~i~~l~~la~~~~~~~~~~~~~~ip~~IMTS~~t~e~t~~ 198 (380)
++++++||||.++||+ +|.+.|+ .|||++++.++.+.+. + +.-+++.+. ++.+.+
T Consensus 2 ~~~~iIlA~g~S~R~~---~K~Ll~i---~Gkpll~~~l~~l~~~---------------~--i~~ivvv~~--~~~i~~ 56 (245)
T PRK05450 2 KFLIIIPARYASTRLP---GKPLADI---GGKPMIVRVYERASKA---------------G--ADRVVVATD--DERIAD 56 (245)
T ss_pred ceEEEEecCCCCCCCC---CCccccc---CCcCHHHHHHHHHHhc---------------C--CCeEEEECC--cHHHHH
Confidence 5889999999999995 7999999 8999999999987641 1 333444443 577888
Q ss_pred HHhhcCCCCCCCCceEEEEeCCeeeEecCCcccccCCCccccccCCCchhhHHHhhCChHHHHHHCCCeEEEEEcCCCcc
Q 016922 199 YFEGHKYFGLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGVDNAL 278 (380)
Q Consensus 199 ~f~~~~~FGl~~~~V~~f~Q~~~P~~~~~gki~l~~~~~i~~~P~GnGgi~~aL~~~g~l~~l~~~Gi~yi~v~~vDN~L 278 (380)
++.+ +|. .+.+. ....+.|++++..++. .+...+-+++++++.|+++
T Consensus 57 ~~~~---~~~---~v~~~---------------------~~~~~~gt~~~~~~~~------~~~~~~~~~vlv~~~D~Pl 103 (245)
T PRK05450 57 AVEA---FGG---EVVMT---------------------SPDHPSGTDRIAEAAA------KLGLADDDIVVNVQGDEPL 103 (245)
T ss_pred HHHH---cCC---EEEEC---------------------CCcCCCchHHHHHHHH------hcCCCCCCEEEEecCCCCC
Confidence 8864 343 12111 0123567777665443 2211234678899999986
Q ss_pred cccCCHHHHH----HHHHhCCceEEEEeecC-----CCCcccceEEEEcCCCCeEEEEecccCh-hhhhhhccCCCccee
Q 016922 279 VRVADPTFLG----YFIDKGVSAGAKVVRKA-----YPQEKVGVFVRRGKGGPLTVVEYSELDP-SLASAINQETGRLRF 348 (380)
Q Consensus 279 ~~~~Dp~~lG----~~~~~~~d~~~kvv~k~-----~p~e~vGvl~~~~~~g~~~vvEYsel~~-~~~~~~~~~~g~l~f 348 (380)
. ++..+. .+...+.++.+-+++.. ...+.+|++ .. ++| .|+++.+.+. +.....+ .....-
T Consensus 104 i---~~~~l~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~d-~~g--~v~~~~e~~~~~~~~~~~--~~~~~~ 174 (245)
T PRK05450 104 I---PPEIIDQVAEPLANPEADMATLAVPIHDAEEAFNPNVVKVV-LD-ADG--RALYFSRAPIPYGRDAFA--DSAPTP 174 (245)
T ss_pred C---CHHHHHHHHHHHhcCCCCeEeeeeecCCHHHhcCcCCCEEE-eC-CCC--cEEEecCCCCCCCCCccc--cccCcc
Confidence 3 454443 33334566665555542 122445654 32 356 5677777652 1110000 000011
Q ss_pred ccccccchhccHHHHHHHHh
Q 016922 349 CWSNVCLHMFTLDFLNQVAN 368 (380)
Q Consensus 349 ~~gNi~~~~f~l~fL~~~~~ 368 (380)
...|++++.|+.+.++.+.+
T Consensus 175 ~~~~~Giy~~~~~~l~~~~~ 194 (245)
T PRK05450 175 VYRHIGIYAYRRGFLRRFVS 194 (245)
T ss_pred ccEEEEEEecCHHHHHHHHh
Confidence 34699999999999998865
No 55
>TIGR02091 glgC glucose-1-phosphate adenylyltransferase. This enzyme, glucose-1-phosphate adenylyltransferase, is also called ADP-glucose pyrophosphorylase. The plant form is an alpha2,beta2 heterodimer, allosterically regulated in plants. Both subunits are homologous and included in this model. In bacteria, both homomeric forms of GlgC and more active heterodimers of GlgC and GlgD have been described. This model describes the GlgC subunit only. This enzyme appears in variants of glycogen synthesis pathways that use ADP-glucose, rather than UDP-glucose as in animals.
Probab=98.80 E-value=1.4e-07 Score=94.08 Aligned_cols=198 Identities=16% Similarity=0.282 Sum_probs=117.7
Q ss_pred EEEecCCCccccC---CCCCCccccccCCCCC-ccHHHHHHHHHHHHHHHHhhhcCCCCCCCCceeEEEEcCCCchHHHH
Q 016922 122 VLLLSGGQGTRLG---SSDPKGCVNIGLPSGK-SLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATR 197 (380)
Q Consensus 122 vvlLAGG~GTRLg---~~~PKg~~~i~l~s~k-sllq~~~e~i~~l~~la~~~~~~~~~~~~~~ip~~IMTS~~t~e~t~ 197 (380)
+|+||||.||||+ .+.||+|+|+ .++ +++++.++.+.. .+ |.-+++...+..+.+.
T Consensus 1 aiILAaG~gtRl~plt~~~pK~llpv---~g~~pli~~~l~~l~~---------------~g--i~~i~iv~~~~~~~i~ 60 (361)
T TIGR02091 1 AMVLAGGRGSRLSPLTKRRAKPAVPF---GGKYRIIDFPLSNCIN---------------SG--IRRIGVLTQYKSHSLN 60 (361)
T ss_pred CEEeCCCCCCccchhhhCCcccccee---cceeeEeeehhhhhhh---------------cC--CceEEEEeccChHHHH
Confidence 4899999999998 4689999999 788 799999988764 13 4445666667778899
Q ss_pred HHHhhcCCCCCCC---CceEEEEeCCeeeEecCCcccccCCCccccccCCCchhhHHHhhCChHHHHHHCCCeEEEEEcC
Q 016922 198 KYFEGHKYFGLES---DQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGV 274 (380)
Q Consensus 198 ~~f~~~~~FGl~~---~~V~~f~Q~~~P~~~~~gki~l~~~~~i~~~P~GnGgi~~aL~~~g~l~~l~~~Gi~yi~v~~v 274 (380)
++|.+ .+++.. ..+.++. .. ....-...|.|+|+..++.. +.+....-+++.|.+.
T Consensus 61 ~~~~~--~~~~~~~~~~~~~~~~-----~~---------~~~~~~~~~~Gt~~al~~a~-----~~~~~~~~~~~lv~~g 119 (361)
T TIGR02091 61 RHIQR--GWDFDGFIDGFVTLLP-----AQ---------QRESGTDWYQGTADAVYQNL-----DLIEDYDPEYVLILSG 119 (361)
T ss_pred HHHHh--ccCccCccCCCEEEeC-----Cc---------ccCCCCccccCcHHHHHHHH-----HHHHhcCCCEEEEecC
Confidence 99985 233321 1122110 00 00011234689888766432 2232222367888999
Q ss_pred CCcccccCCHHHHHHHHHhCCceEEEEeecC-CCCcccceEEEEcCCCCeEEEEecccChhhhhhhccCCCcceeccccc
Q 016922 275 DNALVRVADPTFLGYFIDKGVSAGAKVVRKA-YPQEKVGVFVRRGKGGPLTVVEYSELDPSLASAINQETGRLRFCWSNV 353 (380)
Q Consensus 275 DN~L~~~~Dp~~lG~~~~~~~d~~~kvv~k~-~p~e~vGvl~~~~~~g~~~vvEYsel~~~~~~~~~~~~g~l~f~~gNi 353 (380)
|++. ...-..++-.+..+++++.+-+.+.. ...+.+|++... .+| .|.+|.|-|..-... .+.......|+
T Consensus 120 D~l~-~~~l~~~l~~~~~~~~~~ti~~~~~~~~~~~~~g~v~~d-~~~--~v~~~~ekp~~~~~~----~~~~~~~~~~~ 191 (361)
T TIGR02091 120 DHIY-KMDYEKMLDYHIESGADVTIACIPVPRKEASRFGVMQVD-EDG--RIVDFEEKPANPPSI----PGMPDFALASM 191 (361)
T ss_pred CEEE-cCCHHHHHHHHHHcCCCEEEEEEecChHhcccccEEEEC-CCC--CEEEEEECCCCcccc----cccccccEEee
Confidence 9964 33223456666666776654443321 123567888763 244 467777654211110 01001124689
Q ss_pred cchhccHHHHHHHHh
Q 016922 354 CLHMFTLDFLNQVAN 368 (380)
Q Consensus 354 ~~~~f~l~fL~~~~~ 368 (380)
++++|+.++|.+.++
T Consensus 192 Giyi~~~~~l~~~l~ 206 (361)
T TIGR02091 192 GIYIFDKDVLKELLE 206 (361)
T ss_pred eEEEEcHHHHHHHHH
Confidence 999999998866544
No 56
>cd02517 CMP-KDO-Synthetase CMP-KDO synthetase catalyzes the activation of KDO which is an essential component of the lipopolysaccharide. CMP-KDO Synthetase: 3-Deoxy-D-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) catalyzes the conversion of CTP and 3-deoxy-D-manno-octulosonate into CMP-3-deoxy-D-manno-octulosonate (CMP-KDO) and pyrophosphate. KDO is an essential component of the lipopolysaccharide found in the outer surface of gram-negative eubacteria. It is also a constituent of the capsular polysaccharides of some gram-negative eubacteria. Its presence in the cell wall polysaccharides of green algae and plant were also discovered. However, they have not been found in yeast and animals. The absence of the enzyme in mammalian cells makes it an attractive target molecule for drug design.
Probab=98.75 E-value=2.7e-07 Score=86.57 Aligned_cols=181 Identities=18% Similarity=0.228 Sum_probs=107.9
Q ss_pred CEEEEEecCCCccccCCCCCCccccccCCCCCccHHHHHHHHHHHHHHHHhhhcCCCCCCCCceeEEEEcCCCchHHHHH
Q 016922 119 KLAVLLLSGGQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRK 198 (380)
Q Consensus 119 kvavvlLAGG~GTRLg~~~PKg~~~i~l~s~ksllq~~~e~i~~l~~la~~~~~~~~~~~~~~ip~~IMTS~~t~e~t~~ 198 (380)
++.+++||||.++||+ ||.+.|+ .|||++++.++++.+. .+ +.-+++.+. ++.+.+
T Consensus 1 ~~~~iIlA~g~s~R~~---~K~l~~i---~gkpll~~~l~~l~~~--------------~~--i~~ivvv~~--~~~i~~ 56 (239)
T cd02517 1 KVIVVIPARYASSRLP---GKPLADI---AGKPMIQHVYERAKKA--------------KG--LDEVVVATD--DERIAD 56 (239)
T ss_pred CEEEEEecCCCCCCCC---CCCCccc---CCcCHHHHHHHHHHhC--------------CC--CCEEEEECC--cHHHHH
Confidence 4678999999999996 7999998 8999999999988741 02 334455443 478888
Q ss_pred HHhhcCCCCCCCCceEEEEeCCeeeEecCCcccccCCCccccccCCCchhhHHHhhCChHHHHHHCCCeEEEEEcCCCcc
Q 016922 199 YFEGHKYFGLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGVDNAL 278 (380)
Q Consensus 199 ~f~~~~~FGl~~~~V~~f~Q~~~P~~~~~gki~l~~~~~i~~~P~GnGgi~~aL~~~g~l~~l~~~Gi~yi~v~~vDN~L 278 (380)
++.+ +|++ +..+ ....+.|+|++..++. .+ ....+++++.+.|+++
T Consensus 57 ~~~~---~~~~-----~~~~-------------------~~~~~~gt~~~~~~~~------~~-~~~~d~vlv~~gD~Pl 102 (239)
T cd02517 57 AVES---FGGK-----VVMT-------------------SPDHPSGTDRIAEVAE------KL-DADDDIVVNVQGDEPL 102 (239)
T ss_pred HHHH---cCCE-----EEEc-------------------CcccCchhHHHHHHHH------hc-CCCCCEEEEecCCCCC
Confidence 8864 3321 1110 1123568887666552 22 1124788999999986
Q ss_pred cccCCHHHH----HHHHHh-CCceEEEEeecCCCC--cccce--EEEEcCCCCeEEEEecccCh-hhhhhhccCCCccee
Q 016922 279 VRVADPTFL----GYFIDK-GVSAGAKVVRKAYPQ--EKVGV--FVRRGKGGPLTVVEYSELDP-SLASAINQETGRLRF 348 (380)
Q Consensus 279 ~~~~Dp~~l----G~~~~~-~~d~~~kvv~k~~p~--e~vGv--l~~~~~~g~~~vvEYsel~~-~~~~~~~~~~g~l~f 348 (380)
. ++..+ -.+... ++++++-+++..+|. ...|. ++.. ++| .|.++.+.+. +... .++. ..
T Consensus 103 i---~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~--~v~~~~~~~~~~~~~-~~~~--~~-- 171 (239)
T cd02517 103 I---PPEMIDQVVAALKDDPGVDMATLATPISDEEELFNPNVVKVVLD-KDG--YALYFSRSPIPYPRD-SSED--FP-- 171 (239)
T ss_pred C---CHHHHHHHHHHHHhCCCCCEEEEEEEcCCHHHccCCCCCEEEEC-CCC--CEEEecCCCCCCCCC-CCCC--Cc--
Confidence 3 34433 333233 566665555544432 12333 3332 355 4667765321 1110 0000 11
Q ss_pred ccccccchhccHHHHHHHHh
Q 016922 349 CWSNVCLHMFTLDFLNQVAN 368 (380)
Q Consensus 349 ~~gNi~~~~f~l~fL~~~~~ 368 (380)
+..|+++++|+.+.++.+.+
T Consensus 172 ~~~~~Giy~~~~~~~~~~~~ 191 (239)
T cd02517 172 YYKHIGIYAYRRDFLLRFAA 191 (239)
T ss_pred eeEEEEEEEECHHHHHHHHh
Confidence 24699999999999998765
No 57
>cd02523 PC_cytidylyltransferase Phosphocholine cytidylyltransferases catalyze the synthesis of CDP-choline. This family contains proteins similar to prokaryotic phosphocholine (P-cho) cytidylyltransferases. Phosphocholine (PC) cytidylyltransferases catalyze the transfer of a cytidine monophosphate from CTP to phosphocholine to form CDP-choline. PC is the most abundant phospholipid in eukaryotic membranes and it is also important in prokaryotic membranes. For pathogenic prokaryotes, the cell surface PC facilitates the interaction with host surface and induces attachment and invasion. In addition cell wall PC serves as scaffold for a group of choline-binding proteins that are secreted from the cells. Phosphocholine (PC) cytidylyltransferase is a key enzyme in the prokaryotic choline metabolism pathway. It has been hypothesized to consist of a choline transport system, a choline kinase, CTP:phosphocholine cytidylyltransferase, and a choline phosphotransferase that transfers P-Cho from CDP
Probab=98.73 E-value=2.2e-07 Score=86.61 Aligned_cols=175 Identities=15% Similarity=0.175 Sum_probs=105.5
Q ss_pred EEEecCCCccccCC---CCCCccccccCCCCCccHHHHHHHHHHHHHHHHhhhcCCCCCCCCceeEEEEcCCCchHHHHH
Q 016922 122 VLLLSGGQGTRLGS---SDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRK 198 (380)
Q Consensus 122 vvlLAGG~GTRLg~---~~PKg~~~i~l~s~ksllq~~~e~i~~l~~la~~~~~~~~~~~~~~ip~~IMTS~~t~e~t~~ 198 (380)
+||||||.||||+. ..||+++|+ .+++++++.++.+.. .+ +.-+++..++..+.+.+
T Consensus 1 aiIlAaG~g~Rl~~lt~~~pK~l~~~---~g~~li~~~l~~l~~---------------~g--i~~i~vv~~~~~~~~~~ 60 (229)
T cd02523 1 AIILAAGRGSRLRPLTEDRPKCLLEI---NGKPLLERQIETLKE---------------AG--IDDIVIVTGYKKEQIEE 60 (229)
T ss_pred CEEEeccCccccchhhCCCCceeeeE---CCEEHHHHHHHHHHH---------------CC--CceEEEEeccCHHHHHH
Confidence 48999999999973 579999999 789999999887764 12 44455566678888999
Q ss_pred HHhhcCCCCCCCCceEEEEeCCeeeEecCCcccccCCCccccccCCCchhhHHHhhCChHHHHHHCCCeEEEEEcCCCcc
Q 016922 199 YFEGHKYFGLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGVDNAL 278 (380)
Q Consensus 199 ~f~~~~~FGl~~~~V~~f~Q~~~P~~~~~gki~l~~~~~i~~~P~GnGgi~~aL~~~g~l~~l~~~Gi~yi~v~~vDN~L 278 (380)
++.+. +| +.+..+ -...+.|+++.+.+.. +.+ -+++++.+.|+++
T Consensus 61 ~~~~~--~~-----~~~~~~-------------------~~~~~~g~~~s~~~~~-----~~~----~~~~lv~~~D~~~ 105 (229)
T cd02523 61 LLKKY--PN-----IKFVYN-------------------PDYAETNNIYSLYLAR-----DFL----DEDFLLLEGDVVF 105 (229)
T ss_pred HHhcc--CC-----eEEEeC-------------------cchhhhCcHHHHHHHH-----HHc----CCCEEEEeCCEec
Confidence 98753 22 222211 1123677766555442 222 2578999999974
Q ss_pred cccCCHHHHHHHHHhCCceEEEEeecCCCCcccceEEEEcCCCCeEEEEecccChhhhhhhccCCCcceeccccccchhc
Q 016922 279 VRVADPTFLGYFIDKGVSAGAKVVRKAYPQEKVGVFVRRGKGGPLTVVEYSELDPSLASAINQETGRLRFCWSNVCLHMF 358 (380)
Q Consensus 279 ~~~~Dp~~lG~~~~~~~d~~~kvv~k~~p~e~vGvl~~~~~~g~~~vvEYsel~~~~~~~~~~~~g~l~f~~gNi~~~~f 358 (380)
++.++-.+.+.+.++++-+.+... .+.....+... ++ -.+++..+.+.... . ....|+++++|
T Consensus 106 ----~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~-~~v~~~~~k~~~~~------~----~~~~~~Giy~~ 168 (229)
T cd02523 106 ----DPSILERLLSSPADNAILVDKKTK-EWEDEYVKDLD-DA-GVLLGIISKAKNLE------E----IQGEYVGISKF 168 (229)
T ss_pred ----CHHHHHHHHcCCCCCeEEEccCcc-cccccceeeec-Cc-cceEeecccCCCcc------h----hceEEEeEEEE
Confidence 456777777788887766654222 22212222211 21 13444443322110 0 01357778888
Q ss_pred cHHHHHHHHh
Q 016922 359 TLDFLNQVAN 368 (380)
Q Consensus 359 ~l~fL~~~~~ 368 (380)
+.++++++.+
T Consensus 169 ~~~~~~~l~~ 178 (229)
T cd02523 169 SPEDADRLAE 178 (229)
T ss_pred CHHHHHHHHH
Confidence 8888666543
No 58
>TIGR01173 glmU UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase. This protein is a bifunctional enzyme, GlmU, which catalyzes last two reactions in the four-step pathway of UDP-N-acetylglucosamine biosynthesis from fructose-6-phosphate. Its reaction product is required from peptidoglycan biosynthesis, LPS biosynthesis in species with LPS, and certain other processes.
Probab=98.71 E-value=4.6e-07 Score=92.66 Aligned_cols=178 Identities=16% Similarity=0.154 Sum_probs=104.3
Q ss_pred EEEEecCCCccccCCCCCCccccccCCCCCccHHHHHHHHHHHHHHHHhhhcCCCCCCCCceeEEEEcCCCchHHHHHHH
Q 016922 121 AVLLLSGGQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRKYF 200 (380)
Q Consensus 121 avvlLAGG~GTRLg~~~PKg~~~i~l~s~ksllq~~~e~i~~l~~la~~~~~~~~~~~~~~ip~~IMTS~~t~e~t~~~f 200 (380)
.+|+||||.||||+.+.||.+.|+ .|+|++++.++++.+ .+. -..+|.++ +..+.+.+++
T Consensus 2 ~aiIlAaG~g~R~~~~~pK~l~~i---~gkpli~~~l~~l~~---------------~g~-~~iiiv~~-~~~~~i~~~~ 61 (451)
T TIGR01173 2 SVVILAAGKGTRMKSDLPKVLHPL---AGKPMLEHVIDAARA---------------LGP-QKIHVVYG-HGAEQVRKAL 61 (451)
T ss_pred eEEEEcCCCCcccCCCCchhhcee---CCccHHHHHHHHHHh---------------CCC-CeEEEEEC-CCHHHHHHHh
Confidence 478999999999998889999998 899999999888763 121 13345555 5577888888
Q ss_pred hhcCCCCCCCCceEEEEeCCeeeEecCCcccccCCCccccccCCCchhhHHHhhCChHHHHHHCCCeEEEEEcCCCcccc
Q 016922 201 EGHKYFGLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGVDNALVR 280 (380)
Q Consensus 201 ~~~~~FGl~~~~V~~f~Q~~~P~~~~~gki~l~~~~~i~~~P~GnGgi~~aL~~~g~l~~l~~~Gi~yi~v~~vDN~L~~ 280 (380)
.+. + +.++.| ..|.|+++.+.... +.+. .-+++++.+.|.++.
T Consensus 62 ~~~---~-----i~~~~~---------------------~~~~G~~~ai~~a~-----~~l~--~~~~~lv~~~D~p~i- 104 (451)
T TIGR01173 62 ANR---D-----VNWVLQ---------------------AEQLGTGHAVLQAL-----PFLP--DDGDVLVLYGDVPLI- 104 (451)
T ss_pred cCC---C-----cEEEEc---------------------CCCCchHHHHHHHH-----HhcC--CCCcEEEEECCcCCc-
Confidence 752 2 223221 23557776444332 2221 125788889999752
Q ss_pred cCCHHHHHHHHH--hCCceEEEEeecCCCCcccceEEEEcCCCCeEEEEecccChhhhhhhccCCCcceeccccccchhc
Q 016922 281 VADPTFLGYFID--KGVSAGAKVVRKAYPQEKVGVFVRRGKGGPLTVVEYSELDPSLASAINQETGRLRFCWSNVCLHMF 358 (380)
Q Consensus 281 ~~Dp~~lG~~~~--~~~d~~~kvv~k~~p~e~vGvl~~~~~~g~~~vvEYsel~~~~~~~~~~~~g~l~f~~gNi~~~~f 358 (380)
++..+--+.+ ....+++-+.+..+ ..++|.+... ++|+ |.++.|-++..... . .+ ...|+++++|
T Consensus 105 --~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~g~v~~d-~~g~--v~~~~ek~~~~~~~---~--~~--~~~~~G~y~~ 171 (451)
T TIGR01173 105 --SAETLERLLEAHRQNGITLLTAKLPD-PTGYGRIIRE-NDGK--VTAIVEDKDANAEQ---K--AI--KEINTGVYVF 171 (451)
T ss_pred --CHHHHHHHHHHHhhCCEEEEEEecCC-CCCCCEEEEc-CCCC--EEEEEEcCCCChHH---h--cC--cEEEEEEEEE
Confidence 3443333222 12234333334333 3457887653 3453 56665544321110 0 01 1357778899
Q ss_pred cHHHHHHHHh
Q 016922 359 TLDFLNQVAN 368 (380)
Q Consensus 359 ~l~fL~~~~~ 368 (380)
+.++|.++++
T Consensus 172 ~~~~l~~~l~ 181 (451)
T TIGR01173 172 DGAALKRWLP 181 (451)
T ss_pred eHHHHHHHHH
Confidence 9988766544
No 59
>PRK14354 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=98.70 E-value=3.2e-07 Score=94.33 Aligned_cols=182 Identities=15% Similarity=0.176 Sum_probs=107.5
Q ss_pred CEEEEEecCCCccccCCCCCCccccccCCCCCccHHHHHHHHHHHHHHHHhhhcCCCCCCCCceeEEEEcCCCchHHHHH
Q 016922 119 KLAVLLLSGGQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRK 198 (380)
Q Consensus 119 kvavvlLAGG~GTRLg~~~PKg~~~i~l~s~ksllq~~~e~i~~l~~la~~~~~~~~~~~~~~ip~~IMTS~~t~e~t~~ 198 (380)
++.+|+||||.||||+...||.++|+ .||+++++.++++.. .+ +.-++++..+..+.+.+
T Consensus 2 ~~~avIlAaG~g~Rl~~~~pK~ll~i---~Gkpli~~~l~~l~~---------------~g--i~~iivvv~~~~~~i~~ 61 (458)
T PRK14354 2 NRYAIILAAGKGTRMKSKLPKVLHKV---CGKPMVEHVVDSVKK---------------AG--IDKIVTVVGHGAEEVKE 61 (458)
T ss_pred CceEEEEeCCCCcccCCCCChhhCEe---CCccHHHHHHHHHHh---------------CC--CCeEEEEeCCCHHHHHH
Confidence 46789999999999998889999999 789999999998763 12 33344454566777877
Q ss_pred HHhhcCCCCCCCCceEEEEeCCeeeEecCCcccccCCCccccccCCCchhhHHHhhCChHHHHHHCCCeEEEEEcCCCcc
Q 016922 199 YFEGHKYFGLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGVDNAL 278 (380)
Q Consensus 199 ~f~~~~~FGl~~~~V~~f~Q~~~P~~~~~gki~l~~~~~i~~~P~GnGgi~~aL~~~g~l~~l~~~Gi~yi~v~~vDN~L 278 (380)
++.+. +.+. ....+.|+++.+.... +.+. ..-+++++++.|+++
T Consensus 62 ~~~~~---------~~~~---------------------~~~~~~g~~~al~~a~-----~~l~-~~~d~vlv~~~D~p~ 105 (458)
T PRK14354 62 VLGDR---------SEFA---------------------LQEEQLGTGHAVMQAE-----EFLA-DKEGTTLVICGDTPL 105 (458)
T ss_pred HhcCC---------cEEE---------------------EcCCCCCHHHHHHHHH-----HHhc-ccCCeEEEEECCccc
Confidence 76541 1111 1123567766555332 2232 112678999999975
Q ss_pred cccCC-HHHHHHHHHhCCceEEEEeecCCCCcccceEEEEcCCCCeEEEEecccChhhhhhhccCCCcceeccccccchh
Q 016922 279 VRVAD-PTFLGYFIDKGVSAGAKVVRKAYPQEKVGVFVRRGKGGPLTVVEYSELDPSLASAINQETGRLRFCWSNVCLHM 357 (380)
Q Consensus 279 ~~~~D-p~~lG~~~~~~~d~~~kvv~k~~p~e~vGvl~~~~~~g~~~vvEYsel~~~~~~~~~~~~g~l~f~~gNi~~~~ 357 (380)
....| -.++-++.+.+++.++-+.+..+| ...|.+... .+| .|+++.|-++..... ......|+++++
T Consensus 106 i~~~~l~~li~~~~~~~~~~t~~~~~~~~~-~~~g~v~~d-~~~--~V~~~~ek~~~~~~~-------~~~~~~~~Giy~ 174 (458)
T PRK14354 106 ITAETLKNLIDFHEEHKAAATILTAIAENP-TGYGRIIRN-ENG--EVEKIVEQKDATEEE-------KQIKEINTGTYC 174 (458)
T ss_pred cCHHHHHHHHHHHHhcCCceEEEEEEcCCC-CCceEEEEc-CCC--CEEEEEECCCCChHH-------hcCcEEEEEEEE
Confidence 33222 224444445566765544444344 456776543 345 355555433211100 011236788888
Q ss_pred ccHHHHHHHH
Q 016922 358 FTLDFLNQVA 367 (380)
Q Consensus 358 f~l~fL~~~~ 367 (380)
|+.++|.+.+
T Consensus 175 f~~~~l~~~l 184 (458)
T PRK14354 175 FDNKALFEAL 184 (458)
T ss_pred EEHHHHHHHH
Confidence 9887665543
No 60
>TIGR01479 GMP_PMI mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase (EC 5.3.1.8) (PMI) and mannose-1-phosphate guanylyltransferase (EC 2.7.7.22) in Pseudomonas aeruginosa, Xanthomonas campestris, and Gluconacetobacter xylinus. The literature on the enzyme from E. coli attributes mannose-6-phosphate isomerase activity to an adjacent gene, but the present sequence has not been shown to lack the activity. The PMI domain is C-terminal.
Probab=98.69 E-value=5.1e-07 Score=93.90 Aligned_cols=194 Identities=14% Similarity=0.143 Sum_probs=113.2
Q ss_pred EEEEecCCCccccC----CCCCCccccccCCCCCccHHHHHHHHHHHHHHHHhhhcCCCCCCCCceeEEEEcCCCchHHH
Q 016922 121 AVLLLSGGQGTRLG----SSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDAT 196 (380)
Q Consensus 121 avvlLAGG~GTRLg----~~~PKg~~~i~l~s~ksllq~~~e~i~~l~~la~~~~~~~~~~~~~~ip~~IMTS~~t~e~t 196 (380)
-+|+||||.||||+ .+.||.++|+. .++|+|++.++++..+ +.. ..+|.|+..-...+
T Consensus 2 ~~vILAgG~GtRl~PlS~~~~PK~~l~l~--g~~~ll~~tl~~l~~~---------------~~~-~iviv~~~~~~~~~ 63 (468)
T TIGR01479 2 IPVILAGGSGTRLWPLSRELYPKQFLALV--GDLTMLQQTLKRLAGL---------------PCS-SPLVICNEEHRFIV 63 (468)
T ss_pred EEEEecCcccccCCccccCCCCCceeEcC--CCCcHHHHHHHHHhcC---------------CCc-CcEEecCHHHHHHH
Confidence 36899999999997 34799998872 3389999999987641 211 23466655444456
Q ss_pred HHHHhhcCCCCCCCCceEEEEeCCeeeEecCCcccccCCCccccccCCCchhhHHHhhCChHHHHHH--CCCeEEEEEcC
Q 016922 197 RKYFEGHKYFGLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMAT--RGIKYIDCYGV 274 (380)
Q Consensus 197 ~~~f~~~~~FGl~~~~V~~f~Q~~~P~~~~~gki~l~~~~~i~~~P~GnGgi~~aL~~~g~l~~l~~--~Gi~yi~v~~v 274 (380)
.+.+++ +|++..+ +. ++..|.|+|+...... ..+.+ .+-.+++|.+.
T Consensus 64 ~~~l~~---~~~~~~~--~i---------------------~Ep~~~gTa~ai~~aa-----~~~~~~~~~~~~vlVl~~ 112 (468)
T TIGR01479 64 AEQLRE---IGKLASN--II---------------------LEPVGRNTAPAIALAA-----LLAARRNGEDPLLLVLAA 112 (468)
T ss_pred HHHHHH---cCCCcce--EE---------------------ecccccCchHHHHHHH-----HHHHHHHCCCcEEEEecC
Confidence 666654 3443221 11 3456778887765321 11222 23457899999
Q ss_pred CCcccccCCH-HHH---HHH---HHhCCceEEEEeecCCCCcccceEEEEcC-C--CCeEEEEecccChhhhhhhccCCC
Q 016922 275 DNALVRVADP-TFL---GYF---IDKGVSAGAKVVRKAYPQEKVGVFVRRGK-G--GPLTVVEYSELDPSLASAINQETG 344 (380)
Q Consensus 275 DN~L~~~~Dp-~~l---G~~---~~~~~d~~~kvv~k~~p~e~vGvl~~~~~-~--g~~~vvEYsel~~~~~~~~~~~~g 344 (380)
|+++. |+ .|. -.+ .+.+..+++-+.+ +.|...+|.|..... + +...|..+-|-|+.......-.+|
T Consensus 113 D~~i~---~~~~f~~~l~~~~~~a~~~~lvtlgi~p-~~p~t~YGyI~~~~~~~~~~~~~V~~f~EKP~~~~a~~~l~~g 188 (468)
T TIGR01479 113 DHVIT---DEDAFQAAVKLAMPAAAEGKLVTFGIVP-THPETGYGYIRRGEPLAGEDVYQVQRFVEKPDLATAQAYLESG 188 (468)
T ss_pred ceeec---CHHHHHHHHHHHHHHHhcCCEEEEEecC-CCCCCCceEEEeCCccCCCCceEEeEEEECCChHHHHHHHhcC
Confidence 99863 32 222 222 2334444444444 456788999976310 1 224676777776632211111233
Q ss_pred cceeccccccchhccHHHHHHHHhcc
Q 016922 345 RLRFCWSNVCLHMFTLDFLNQVANGL 370 (380)
Q Consensus 345 ~l~f~~gNi~~~~f~l~fL~~~~~~~ 370 (380)
.. | -|.++++|+.+.|.+.++.+
T Consensus 189 ~~-~--wNsGif~~~~~~ll~~l~~~ 211 (468)
T TIGR01479 189 DY-Y--WNSGMFLFRASRYLAELKKH 211 (468)
T ss_pred Ce-E--EEeeEEEEEHHHHHHHHHHH
Confidence 22 2 48899999988777665544
No 61
>PRK09451 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=98.65 E-value=8.1e-07 Score=91.55 Aligned_cols=179 Identities=19% Similarity=0.161 Sum_probs=107.3
Q ss_pred CEEEEEecCCCccccCCCCCCccccccCCCCCccHHHHHHHHHHHHHHHHhhhcCCCCCCCCceeEEEEcCCCchHHHHH
Q 016922 119 KLAVLLLSGGQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRK 198 (380)
Q Consensus 119 kvavvlLAGG~GTRLg~~~PKg~~~i~l~s~ksllq~~~e~i~~l~~la~~~~~~~~~~~~~~ip~~IMTS~~t~e~t~~ 198 (380)
++.+|+||||.||||+...||.+.|+ .|+|++++.++.+.+ .+.. ..++.++ +..+.+++
T Consensus 5 ~~~aiIlAaG~gtRl~~~~pK~l~~i---~gkpli~~~i~~l~~---------------~gi~-~i~vv~~-~~~~~i~~ 64 (456)
T PRK09451 5 AMSVVILAAGKGTRMYSDLPKVLHTL---AGKPMVQHVIDAANE---------------LGAQ-HVHLVYG-HGGDLLKQ 64 (456)
T ss_pred CceEEEEcCCCCCcCCCCCChhccee---CChhHHHHHHHHHHh---------------cCCC-cEEEEEC-CCHHHHHH
Confidence 58899999999999998889999998 899999999987753 1211 2344444 56677888
Q ss_pred HHhhcCCCCCCCCceEEEEeCCeeeEecCCcccccCCCccccccCCCchhhHHHhhCChHHHHHHCCCeEEEEEcCCCcc
Q 016922 199 YFEGHKYFGLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGVDNAL 278 (380)
Q Consensus 199 ~f~~~~~FGl~~~~V~~f~Q~~~P~~~~~gki~l~~~~~i~~~P~GnGgi~~aL~~~g~l~~l~~~Gi~yi~v~~vDN~L 278 (380)
++.+. .+.+.. ...|.|.++....... .+. .-++++|.+.|.++
T Consensus 65 ~~~~~--------~~~~i~---------------------~~~~~Gt~~al~~a~~-----~l~--~~~~vlV~~gD~P~ 108 (456)
T PRK09451 65 TLADE--------PLNWVL---------------------QAEQLGTGHAMQQAAP-----FFA--DDEDILMLYGDVPL 108 (456)
T ss_pred hhccC--------CcEEEE---------------------CCCCCCcHHHHHHHHH-----hhc--cCCcEEEEeCCccc
Confidence 87531 222221 1247788876654322 221 23678999999976
Q ss_pred cccCCHHHHHHHHH--hCCceEEEEeecCCCCcccceEEEEcCCCCeEEEEecccChhhhhhhccCCCcceeccccccch
Q 016922 279 VRVADPTFLGYFID--KGVSAGAKVVRKAYPQEKVGVFVRRGKGGPLTVVEYSELDPSLASAINQETGRLRFCWSNVCLH 356 (380)
Q Consensus 279 ~~~~Dp~~lG~~~~--~~~d~~~kvv~k~~p~e~vGvl~~~~~~g~~~vvEYsel~~~~~~~~~~~~g~l~f~~gNi~~~ 356 (380)
. ++..+.-..+ ......+.+++..+| .+.|++. . ++| .|+++.|-|...... ...+..|+.++
T Consensus 109 i---~~~~i~~l~~~~~~~~~~i~~~~~~~~-~~yG~v~-~-~~g--~V~~~~EKp~~~~~~-------~~~~~~~~GiY 173 (456)
T PRK09451 109 I---SVETLQRLRDAKPQGGIGLLTVKLDNP-TGYGRIT-R-ENG--KVVGIVEQKDATDEQ-------RQIQEINTGIL 173 (456)
T ss_pred C---CHHHHHHHHHHhhcCCEEEEEEEcCCC-CCceEEE-e-cCC--eEEEEEECCCCChHH-------hhccEEEEEEE
Confidence 3 2332322211 222233344444455 5578863 3 255 566666654321110 00123588888
Q ss_pred hccHHHHHHHHh
Q 016922 357 MFTLDFLNQVAN 368 (380)
Q Consensus 357 ~f~l~fL~~~~~ 368 (380)
+|+.+.|.+.++
T Consensus 174 i~~~~~l~~~l~ 185 (456)
T PRK09451 174 VANGADLKRWLA 185 (456)
T ss_pred EEEHHHHHHHHH
Confidence 999877766554
No 62
>KOG1460 consensus GDP-mannose pyrophosphorylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones]
Probab=98.57 E-value=6.5e-07 Score=86.62 Aligned_cols=191 Identities=18% Similarity=0.262 Sum_probs=132.4
Q ss_pred CEEEEEecCC--CccccC---CCCCCccccccCCCCCccHHHHHHHHHHHHHHHHhhhcCCCCCCCCceeEEEEcCCCch
Q 016922 119 KLAVLLLSGG--QGTRLG---SSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTD 193 (380)
Q Consensus 119 kvavvlLAGG--~GTRLg---~~~PKg~~~i~l~s~ksllq~~~e~i~~l~~la~~~~~~~~~~~~~~ip~~IMTS~~t~ 193 (380)
++.+|+|.|| .|||.. ++.||.++|| .|.++.+..++...++..+ .-+.+.-++..
T Consensus 2 ~~~AVIlVGGP~kGTRFRPLSf~vPKPLfpi---aG~pmI~Hhi~ac~qi~~l----------------~eI~LvGFy~e 62 (407)
T KOG1460|consen 2 KVKAVILVGGPQKGTRFRPLSFNVPKPLFPI---AGVPMIHHHISACKQISGL----------------AEILLVGFYEE 62 (407)
T ss_pred ceEEEEEecCCCCCccccccccCCCCCcccc---CCcchhhhhHHHHhcccch----------------hheeEEecccc
Confidence 4567777788 799976 9999999999 8999999988877654333 23567777888
Q ss_pred HHHHHHHhh-cCCCCCCCCceEEEEeCCeeeEecCCcccccCCCccccccCCCchhhHHHhhCChHHHHHHCCCeEEEEE
Q 016922 194 DATRKYFEG-HKYFGLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCY 272 (380)
Q Consensus 194 e~t~~~f~~-~~~FGl~~~~V~~f~Q~~~P~~~~~gki~l~~~~~i~~~P~GnGgi~~aL~~~g~l~~l~~~Gi~yi~v~ 272 (380)
+....|+.. .+.|-++ |. +--+.+|+|+||-...++++ ..+---..+|+.
T Consensus 63 ~~f~~fis~~~~e~~~p---vr---------------------YL~E~~plGtaGgLyhFrdq-----Il~g~ps~vFvl 113 (407)
T KOG1460|consen 63 RVFTDFISAIQQEFKVP---VR---------------------YLREDNPLGTAGGLYHFRDQ-----ILAGSPSAVFVL 113 (407)
T ss_pred hHHHHHHHHHHhhcccc---hh---------------------hhccCCCCCcccceeehhhH-----HhcCCCceEEEE
Confidence 888888875 2334433 22 22467899999988877643 444456789999
Q ss_pred cCCCcccccCCHHHHHHHHHhCCceEEEEee--cCCCCcccceEEEEcCCCCeEEEEecccChhhhhhhccCCCcceecc
Q 016922 273 GVDNALVRVADPTFLGYFIDKGVSAGAKVVR--KAYPQEKVGVFVRRGKGGPLTVVEYSELDPSLASAINQETGRLRFCW 350 (380)
Q Consensus 273 ~vDN~L~~~~Dp~~lG~~~~~~~d~~~kvv~--k~~p~e~vGvl~~~~~~g~~~vvEYsel~~~~~~~~~~~~g~l~f~~ 350 (380)
|.|-.. ..--+.++..|...+..+.+-+++ +.. ....|.++..-..| .|+-|.|.|..... ..
T Consensus 114 naDVCc-sfPl~~ml~ahr~~g~~~tll~tkvs~e~-asnfG~lV~dP~t~--evlHYveKPsTfvS-----------d~ 178 (407)
T KOG1460|consen 114 NADVCC-SFPLQDMLEAHRRYGGIGTLLVTKVSREQ-ASNFGCLVEDPSTG--EVLHYVEKPSTFVS-----------DI 178 (407)
T ss_pred ecceec-CCcHHHHHHHHhhcCCceEEEEEEecHhH-hhccCeeeecCCcC--ceEEeecCcchhhh-----------cc
Confidence 999874 445567888888888777543332 222 46678888752233 68999988875322 13
Q ss_pred ccccchhccHHHHHHHHhcccc
Q 016922 351 SNVCLHMFTLDFLNQVANGLEK 372 (380)
Q Consensus 351 gNi~~~~f~l~fL~~~~~~~~~ 372 (380)
-|.++++|+.+.++.+.+.++.
T Consensus 179 InCGvYlF~~eif~~i~~v~~q 200 (407)
T KOG1460|consen 179 INCGVYLFTPEIFNAIAEVYRQ 200 (407)
T ss_pred cceeEEEecHHHHHHHHHHHHH
Confidence 4777888998887776665544
No 63
>cd04198 eIF-2B_gamma_N The N-terminal domain of gamma subunit of the eIF-2B is a subfamily of glycosyltransferase 2. N-terminal domain of gamma subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit gamma shares sequence similarity with epsilon subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.
Probab=98.52 E-value=1.9e-06 Score=80.05 Aligned_cols=134 Identities=12% Similarity=0.155 Sum_probs=86.8
Q ss_pred EEEEecCCCccccC---CCCCCccccccCCCCCccHHHHHHHHHHHHHHHHhhhcCCCCCCCCce-eEEEEcCCCchHHH
Q 016922 121 AVLLLSGGQGTRLG---SSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAI-HWYIMTSPFTDDAT 196 (380)
Q Consensus 121 avvlLAGG~GTRLg---~~~PKg~~~i~l~s~ksllq~~~e~i~~l~~la~~~~~~~~~~~~~~i-p~~IMTS~~t~e~t 196 (380)
.+|+||||.|+||+ .+.||+++|+ .+++++++.++.+.+ .+ + ..+|.+.....+.+
T Consensus 2 ~aVILAgG~g~R~~plt~~~pK~Llpv---~g~pli~~~l~~l~~---------------~g--~~~iivv~~~~~~~~i 61 (214)
T cd04198 2 QAVILAGGGGSRLYPLTDNIPKALLPV---ANKPMIWYPLDWLEK---------------AG--FEDVIVVVPEEEQAEI 61 (214)
T ss_pred EEEEEeCCCCCcCCccccCCCcccCEE---CCeeHHHHHHHHHHH---------------CC--CCeEEEEECHHHHHHH
Confidence 46889999999997 4689999999 799999999888764 12 2 23555554445678
Q ss_pred HHHHhhcCCCCCCCCceEEEEeCCeeeEecCCcccccCCCccccccCCCchhhHHHhhCChHHHHHHCCCeEEEEEcCCC
Q 016922 197 RKYFEGHKYFGLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGVDN 276 (380)
Q Consensus 197 ~~~f~~~~~FGl~~~~V~~f~Q~~~P~~~~~gki~l~~~~~i~~~P~GnGgi~~aL~~~g~l~~l~~~Gi~yi~v~~vDN 276 (380)
++++++.. ..........+ .....+.|+|+..+...+. + .+.+.|++.|.
T Consensus 62 ~~~l~~~~-~~~~~~~~~~~--------------------~~~~~~~gt~~al~~~~~~-----i----~~d~lv~~~D~ 111 (214)
T cd04198 62 STYLRSFP-LNLKQKLDEVT--------------------IVLDEDMGTADSLRHIRKK-----I----KKDFLVLSCDL 111 (214)
T ss_pred HHHHHhcc-cccCcceeEEE--------------------ecCCCCcChHHHHHHHHhh-----c----CCCEEEEeCcc
Confidence 88887532 11110101111 1134589999999877553 1 24577778997
Q ss_pred cccccCCHHHHHHHHHhCCceEEEEeecC
Q 016922 277 ALVRVADPTFLGYFIDKGVSAGAKVVRKA 305 (380)
Q Consensus 277 ~L~~~~Dp~~lG~~~~~~~d~~~kvv~k~ 305 (380)
+. ...--.++-.+...++.+++-+.+..
T Consensus 112 i~-~~~l~~~l~~h~~~~~~~t~~~~~~~ 139 (214)
T cd04198 112 IT-DLPLIELVDLHRSHDASLTVLLYPPP 139 (214)
T ss_pred cc-ccCHHHHHHHHhccCCcEEEEEeccC
Confidence 64 33334466777777888877655543
No 64
>COG0448 GlgC ADP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]
Probab=98.42 E-value=2.7e-06 Score=85.48 Aligned_cols=201 Identities=16% Similarity=0.288 Sum_probs=129.9
Q ss_pred CCEEEEEecCCCccccC---CCCCCccccccCCCCC-ccHHHHHHHHHHHHHHHHhhhcCCCCCCCCceeEEEEcCCCch
Q 016922 118 GKLAVLLLSGGQGTRLG---SSDPKGCVNIGLPSGK-SLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTD 193 (380)
Q Consensus 118 gkvavvlLAGG~GTRLg---~~~PKg~~~i~l~s~k-sllq~~~e~i~~l~~la~~~~~~~~~~~~~~ip~~IMTS~~t~ 193 (380)
.++-+++||||+|+||. ...+|+..|+ .|| -+.++-+-... . .+. --.++.|-...|
T Consensus 4 ~~~laiILaGg~G~rL~~LT~~RakpAVpF---gGkYRiIDF~LSN~v------N---------SGi-~~I~VltQy~~~ 64 (393)
T COG0448 4 KNVLAIILAGGRGSRLSPLTKDRAKPAVPF---GGKYRIIDFALSNCV------N---------SGI-RRIGVLTQYKSH 64 (393)
T ss_pred cceEEEEEcCCCCCccchhhhCcccccccc---CceeEEEeEEccccc------c---------cCC-CeEEEEeccchh
Confidence 36888999999999998 5678888777 333 23333222211 1 121 235677777777
Q ss_pred HHHHHHHhhcCCCCCCCCc--eEEEEeCCeeeEec-CCcccccCCCccccccCCCchhhHHHhhCChHHHHHHCCCeEEE
Q 016922 194 DATRKYFEGHKYFGLESDQ--VTFFQQGTIPCVSK-DGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYID 270 (380)
Q Consensus 194 e~t~~~f~~~~~FGl~~~~--V~~f~Q~~~P~~~~-~gki~l~~~~~i~~~P~GnGgi~~aL~~~g~l~~l~~~Gi~yi~ 270 (380)
...+++.....|+++..+ |+++ |.... +++ .|. -|+.+.+. ++ +..+.+-+.+|+.
T Consensus 65 -SL~~Hi~~G~~w~l~~~~~~v~il-----p~~~~~~~~---------~wy-~Gtadai~---Qn--l~~i~~~~~eyvl 123 (393)
T COG0448 65 -SLNDHIGRGWPWDLDRKNGGVFIL-----PAQQREGGE---------RWY-EGTADAIY---QN--LLIIRRSDPEYVL 123 (393)
T ss_pred -HHHHHhhCCCccccccccCcEEEe-----CchhccCCC---------cce-eccHHHHH---Hh--HHHHHhcCCCEEE
Confidence 889999988888887543 4443 22111 111 111 23333322 22 3455677999999
Q ss_pred EEcCCCcccccCCHHHHHHHHHhCCceEEEEee--cCCCCcccceEEEEcCCCCeEEEEecccChhhhhhhccCCCccee
Q 016922 271 CYGVDNALVRVADPTFLGYFIDKGVSAGAKVVR--KAYPQEKVGVFVRRGKGGPLTVVEYSELDPSLASAINQETGRLRF 348 (380)
Q Consensus 271 v~~vDN~L~~~~Dp~~lG~~~~~~~d~~~kvv~--k~~p~e~vGvl~~~~~~g~~~vvEYsel~~~~~~~~~~~~g~l~f 348 (380)
+.+.|-+. +..--.++-+|.+.++|+++.|.+ +..+ .+.|++.. +++| +|+|+.|-|.+ ...+ .
T Consensus 124 IlsgDhIY-kmDy~~ml~~H~~~gadiTv~~~~Vp~~ea-s~fGim~~-D~~~--~i~~F~eKp~~--~~~~-------~ 189 (393)
T COG0448 124 ILSGDHIY-KMDYSDMLDFHIESGADVTVAVKEVPREEA-SRFGVMNV-DENG--RIIEFVEKPAD--GPPS-------N 189 (393)
T ss_pred EecCCEEE-ecCHHHHHHHHHHcCCCEEEEEEECChHhh-hhcCceEE-CCCC--CEEeeeeccCc--CCcc-------c
Confidence 99999984 777777999999999999765443 2233 56686654 3456 68999988886 1111 0
Q ss_pred ccccccchhccHHHHHHHHhcccc
Q 016922 349 CWSNVCLHMFTLDFLNQVANGLEK 372 (380)
Q Consensus 349 ~~gNi~~~~f~l~fL~~~~~~~~~ 372 (380)
..+.+.+++|+.++|.++++..+.
T Consensus 190 ~laSMgiYIf~~~~L~~~L~~~~~ 213 (393)
T COG0448 190 SLASMGIYIFNTDLLKELLEEDAK 213 (393)
T ss_pred ceeeeeeEEEcHHHHHHHHHHHhc
Confidence 146789999999999999886554
No 65
>cd02507 eIF-2B_gamma_N_like The N-terminal of eIF-2B_gamma_like is predicted to have glycosyltransferase activity. N-terminal domain of eEIF-2B epsilon and gamma, subunits of eukaryotic translation initiators, is a subfamily of glycosyltranferase 2 and is predicted to have glycosyltranferase activity. eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.
Probab=98.37 E-value=1.5e-05 Score=74.15 Aligned_cols=164 Identities=17% Similarity=0.153 Sum_probs=95.5
Q ss_pred EEEEecCCCccccC---CCCCCccccccCCCCCccHHHHHHHHHHHHHHHHhhhcCCCCCCCCcee-EEEEcCCCchHHH
Q 016922 121 AVLLLSGGQGTRLG---SSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIH-WYIMTSPFTDDAT 196 (380)
Q Consensus 121 avvlLAGG~GTRLg---~~~PKg~~~i~l~s~ksllq~~~e~i~~l~~la~~~~~~~~~~~~~~ip-~~IMTS~~t~e~t 196 (380)
-+|+||||.|+||+ ...||+++|+ .|++++++.++.+.+ .+ +. .+|++. +..+.+
T Consensus 2 ~avIlagg~g~rl~plt~~~pK~llpv---~g~pli~~~l~~l~~---------------~g--i~~i~vv~~-~~~~~~ 60 (216)
T cd02507 2 QAVVLADGFGSRFLPLTSDIPKALLPV---ANVPLIDYTLEWLEK---------------AG--VEEVFVVCC-EHSQAI 60 (216)
T ss_pred eEEEEeCCCccccCccccCCCcccceE---CCEEHHHHHHHHHHH---------------CC--CCeEEEEeC-CcHHHH
Confidence 36889999999997 4789999999 899999998887663 13 33 345554 556677
Q ss_pred HHHHhhcCCCCCCC-CceEEEEeCCeeeEecCCcccccCCCccccccCCCchhhHHHhhCChHHHHHHCCCeEEEEEcCC
Q 016922 197 RKYFEGHKYFGLES-DQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGVD 275 (380)
Q Consensus 197 ~~~f~~~~~FGl~~-~~V~~f~Q~~~P~~~~~gki~l~~~~~i~~~P~GnGgi~~aL~~~g~l~~l~~~Gi~yi~v~~vD 275 (380)
.+++.+..+..... ..+.+. ......+.|+++........ + .+.+.+.+.|
T Consensus 61 ~~~~~~~~~~~~~~~~~v~~~-------------------~~~~~~~~Gta~~l~~~~~~--i-------~~dflv~~gD 112 (216)
T cd02507 61 IEHLLKSKWSSLSSKMIVDVI-------------------TSDLCESAGDALRLRDIRGL--I-------RSDFLLLSCD 112 (216)
T ss_pred HHHHHhcccccccCCceEEEE-------------------EccCCCCCccHHHHHHHhhc--C-------CCCEEEEeCC
Confidence 77777643210000 011111 00123477888776644321 1 2457788899
Q ss_pred CcccccCCHHHHHH--HHHhCCceEEEEeecCCC--------CcccceEEEEcCCCCeEEEEecccChh
Q 016922 276 NALVRVADPTFLGY--FIDKGVSAGAKVVRKAYP--------QEKVGVFVRRGKGGPLTVVEYSELDPS 334 (380)
Q Consensus 276 N~L~~~~Dp~~lG~--~~~~~~d~~~kvv~k~~p--------~e~vGvl~~~~~~g~~~vvEYsel~~~ 334 (380)
.+. ...-..++-. ....+.++++.+.....+ .+..++++...++++..++.|.+.+++
T Consensus 113 ~i~-~~~l~~~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~~~~~~~~~~~~~ 180 (216)
T cd02507 113 LVS-NIPLSELLEERRKKDKNAIATLTVLLASPPVSTEQSKKTEEEDVIAVDSKTQRLLLLHYEEDLDE 180 (216)
T ss_pred Eee-cCCHHHHHHHHHhhCcccceEEEEEeccCCCCccccccCCCCcEEEEcCCCCceEEEechhhcCc
Confidence 874 3333334432 334455555443332211 233477776543455788988876554
No 66
>cd04183 GT2_BcE_like GT2_BcbE_like is likely involved in the biosynthesis of the polysaccharide capsule. GT2_BcbE_like: The bcbE gene is one of the genes in the capsule biosynthetic locus of Pasteurella multocida. Its deducted product is likely involved in the biosynthesis of the polysaccharide capsule, which is found on surface of a wide range of bacteria. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=98.36 E-value=8.3e-06 Score=75.94 Aligned_cols=169 Identities=14% Similarity=0.155 Sum_probs=92.2
Q ss_pred EEEecCCCccccC---CCCCCccccccCCCCCccHHHHHHHHHHHHHHHHhhhcCCCCCCCCceeEEEEcCC--CchHHH
Q 016922 122 VLLLSGGQGTRLG---SSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSP--FTDDAT 196 (380)
Q Consensus 122 vvlLAGG~GTRLg---~~~PKg~~~i~l~s~ksllq~~~e~i~~l~~la~~~~~~~~~~~~~~ip~~IMTS~--~t~e~t 196 (380)
+|+||||.||||+ .+.||+|+|+ .|++++++.++.+.. .+..- .+|.|.. ...+..
T Consensus 1 ~iIlAaG~g~Rl~plt~~~pK~ll~i---~g~pli~~~l~~l~~---------------~g~~~-ivvv~~~~~~~~~~~ 61 (231)
T cd04183 1 IIIPMAGLGSRFKKAGYTYPKPLIEV---DGKPMIEWVIESLAK---------------IFDSR-FIFICRDEHNTKFHL 61 (231)
T ss_pred CEEECCcCCccccccCCCCCceeeEE---CCEEHHHHHHHhhhc---------------cCCce-EEEEEChHHhhhhhH
Confidence 5899999999996 4679999999 789999998887753 12222 2333321 112233
Q ss_pred HHHHhhcCCCCCCCCceEEEEeCCeeeEecCCcccccCCCccccccCCCchhhHHHhhCChHHHHHHCCCeEEEEEcCCC
Q 016922 197 RKYFEGHKYFGLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGVDN 276 (380)
Q Consensus 197 ~~~f~~~~~FGl~~~~V~~f~Q~~~P~~~~~gki~l~~~~~i~~~P~GnGgi~~aL~~~g~l~~l~~~Gi~yi~v~~vDN 276 (380)
.+.++... . ++.++. ....+.|+++.+.+.... + .+-++++|.+.|.
T Consensus 62 ~~~~~~~~-~-----~~~i~~--------------------~~~~~~g~~~~l~~a~~~-----l--~~~~~~lv~~~D~ 108 (231)
T cd04183 62 DESLKLLA-P-----NATVVE--------------------LDGETLGAACTVLLAADL-----I--DNDDPLLIFNCDQ 108 (231)
T ss_pred HHHHHHhC-C-----CCEEEE--------------------eCCCCCcHHHHHHHHHhh-----c--CCCCCEEEEecce
Confidence 34443211 1 121110 112377888776654321 2 1235788899999
Q ss_pred cccccCCHHHHHHHHHhCCceEEEEeecCCCCcccceEEEEcCCCCeEEEEecccChhhhhhhccCCCcceeccccccch
Q 016922 277 ALVRVADPTFLGYFIDKGVSAGAKVVRKAYPQEKVGVFVRRGKGGPLTVVEYSELDPSLASAINQETGRLRFCWSNVCLH 356 (380)
Q Consensus 277 ~L~~~~Dp~~lG~~~~~~~d~~~kvv~k~~p~e~vGvl~~~~~~g~~~vvEYsel~~~~~~~~~~~~g~l~f~~gNi~~~ 356 (380)
++. ..-..++-.+...+.+.++-++.. +..+.|.+... .+|+ |.+..+-+. . + ...|++.+
T Consensus 109 i~~-~~~~~~~~~~~~~~~~~~i~~~~~--~~~~~~~v~~d-~~~~--v~~~~ek~~-------~--~----~~~~~Giy 169 (231)
T cd04183 109 IVE-SDLLAFLAAFRERDLDGGVLTFFS--SHPRWSYVKLD-ENGR--VIETAEKEP-------I--S----DLATAGLY 169 (231)
T ss_pred eec-cCHHHHHHHhhccCCceEEEEEeC--CCCCeEEEEEC-CCCC--EEEeEEcCC-------C--C----CccEeEEE
Confidence 753 222223333445566655444443 34566776543 3553 444433211 0 0 12577778
Q ss_pred hccHH
Q 016922 357 MFTLD 361 (380)
Q Consensus 357 ~f~l~ 361 (380)
+|+.+
T Consensus 170 ~~~~~ 174 (231)
T cd04183 170 YFKSG 174 (231)
T ss_pred EECcH
Confidence 88865
No 67
>PRK13368 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional
Probab=98.33 E-value=1.9e-05 Score=73.97 Aligned_cols=176 Identities=19% Similarity=0.214 Sum_probs=100.5
Q ss_pred CEEEEEecCCCccccCCCCCCccccccCCCCCccHHHHHHHHHHHHHHHHhhhcCCCCCCCCceeEEEEcCCCchHHHHH
Q 016922 119 KLAVLLLSGGQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRK 198 (380)
Q Consensus 119 kvavvlLAGG~GTRLg~~~PKg~~~i~l~s~ksllq~~~e~i~~l~~la~~~~~~~~~~~~~~ip~~IMTS~~t~e~t~~ 198 (380)
++++|++|+|.++|++ +|.+.|+ .|||++++.++.+.+. .+ +.-+|+++. ++.+.+
T Consensus 2 ~~~aiIlA~g~s~R~~---~K~l~~i---~GkPli~~~i~~l~~~--------------~~--~~~ivv~t~--~~~i~~ 57 (238)
T PRK13368 2 KVVVVIPARYGSSRLP---GKPLLDI---LGKPMIQHVYERAAQA--------------AG--VEEVYVATD--DQRIED 57 (238)
T ss_pred cEEEEEecCCCCCCCC---CCccCcc---CCcCHHHHHHHHHHhc--------------CC--CCeEEEECC--hHHHHH
Confidence 5789999999999995 4999998 7999999999987641 02 333444443 478889
Q ss_pred HHhhcCCCCCCCCceEEEEeCCeeeEecCCcccccCCCccccccCCCchhhHHHhhCChHHHHHHCCCeEEEEEcCCCcc
Q 016922 199 YFEGHKYFGLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGVDNAL 278 (380)
Q Consensus 199 ~f~~~~~FGl~~~~V~~f~Q~~~P~~~~~gki~l~~~~~i~~~P~GnGgi~~aL~~~g~l~~l~~~Gi~yi~v~~vDN~L 278 (380)
++++ +|.+ +. +. -...+.|++++..++. .+ +.+++++.+.|+++
T Consensus 58 ~~~~---~~~~---v~-~~--------------------~~~~~~g~~~~~~a~~------~~---~~d~~lv~~~D~P~ 101 (238)
T PRK13368 58 AVEA---FGGK---VV-MT--------------------SDDHLSGTDRLAEVML------KI---EADIYINVQGDEPM 101 (238)
T ss_pred HHHH---cCCe---EE-ec--------------------CccCCCccHHHHHHHH------hC---CCCEEEEEcCCcCc
Confidence 9875 3432 11 10 0122567776555432 22 45789999999987
Q ss_pred cccCCHHHHH----HHHHhCC-ceEEEEeecCC------CCcccceEEEEcCCCCeEEEEecccChhhhhhhccCCCcce
Q 016922 279 VRVADPTFLG----YFIDKGV-SAGAKVVRKAY------PQEKVGVFVRRGKGGPLTVVEYSELDPSLASAINQETGRLR 347 (380)
Q Consensus 279 ~~~~Dp~~lG----~~~~~~~-d~~~kvv~k~~------p~e~vGvl~~~~~~g~~~vvEYsel~~~~~~~~~~~~g~l~ 347 (380)
. .+..+. .+...+. ++.+-+.+... | ...|++. . ++|+ +..+.+-+... .+ +....
T Consensus 102 i---~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~~-~-~~g~--v~~~~~~~~~~---~~--~~~~~ 168 (238)
T PRK13368 102 I---RPRDIDTLIQPMLDDPSINVATLCAPISTEEEFESP-NVVKVVV-D-KNGD--ALYFSRSPIPS---RR--DGESA 168 (238)
T ss_pred C---CHHHHHHHHHHHHHCCCccceeEEEEcCCHHHhcCc-CCCEEEE-C-CCCC--EEEeeCCCCCC---CC--CCCCC
Confidence 4 344333 3323333 33333433221 3 1223322 2 3564 44555322100 01 10110
Q ss_pred eccccccchhccHHHHHHHH
Q 016922 348 FCWSNVCLHMFTLDFLNQVA 367 (380)
Q Consensus 348 f~~gNi~~~~f~l~fL~~~~ 367 (380)
....|.++++|+.++++..-
T Consensus 169 ~~~~n~giy~~~~~~l~~~~ 188 (238)
T PRK13368 169 RYLKHVGIYAFRRDVLQQFS 188 (238)
T ss_pred ceeEEEEEEEeCHHHHHHHH
Confidence 11469999999999999853
No 68
>PLN02917 CMP-KDO synthetase
Probab=98.23 E-value=4.8e-05 Score=74.58 Aligned_cols=181 Identities=14% Similarity=0.200 Sum_probs=107.1
Q ss_pred CEEEEEecCCCccccCCCCCCccccccCCCCCccHHHHHHHHHHHHHHHHhhhcCCCCCCCCceeEEEEcCCCchHHHHH
Q 016922 119 KLAVLLLSGGQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRK 198 (380)
Q Consensus 119 kvavvlLAGG~GTRLg~~~PKg~~~i~l~s~ksllq~~~e~i~~l~~la~~~~~~~~~~~~~~ip~~IMTS~~t~e~t~~ 198 (380)
++.+|++|+|.++|++ +|.+.++ .|||++++.++++... + .+..+|.. ..++.+.+
T Consensus 47 ~i~aIIpA~G~SsR~~---~K~L~~i---~GkPLL~~vi~~a~~~---------------~-~~~~VVV~--~~~e~I~~ 102 (293)
T PLN02917 47 RVVGIIPARFASSRFE---GKPLVHI---LGKPMIQRTWERAKLA---------------T-TLDHIVVA--TDDERIAE 102 (293)
T ss_pred cEEEEEecCCCCCCCC---CCCeeeE---CCEEHHHHHHHHHHcC---------------C-CCCEEEEE--CChHHHHH
Confidence 7899999999999996 5999998 7999999999987631 1 13334443 34678888
Q ss_pred HHhhcCCCCCCCCceEEEEeCCeeeEecCCcccccCCCccccccCCCchhhHHHhhCChHHHHHHCCCeEEEEEcCCCcc
Q 016922 199 YFEGHKYFGLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGVDNAL 278 (380)
Q Consensus 199 ~f~~~~~FGl~~~~V~~f~Q~~~P~~~~~gki~l~~~~~i~~~P~GnGgi~~aL~~~g~l~~l~~~Gi~yi~v~~vDN~L 278 (380)
++.+ +|.+ +..| ....+.|.|.+..++ +.+ ....+++.+.+.|.+|
T Consensus 103 ~~~~---~~v~-----vi~~-------------------~~~~~~GT~~~~~a~------~~l-~~~~d~Vlil~gD~Pl 148 (293)
T PLN02917 103 CCRG---FGAD-----VIMT-------------------SESCRNGTERCNEAL------KKL-EKKYDIVVNIQGDEPL 148 (293)
T ss_pred HHHH---cCCE-----EEeC-------------------CcccCCchHHHHHHH------Hhc-cCCCCEEEEecCCcCC
Confidence 8864 2321 1110 012367888876554 223 2235789999999998
Q ss_pred cccCCHHHHHHHHH---hCCceEE--EEe--ecCCCCcccceEE-EEcCCCCeEEEEec-c-cChhhhhhhccCCCccee
Q 016922 279 VRVADPTFLGYFID---KGVSAGA--KVV--RKAYPQEKVGVFV-RRGKGGPLTVVEYS-E-LDPSLASAINQETGRLRF 348 (380)
Q Consensus 279 ~~~~Dp~~lG~~~~---~~~d~~~--kvv--~k~~p~e~vGvl~-~~~~~g~~~vvEYs-e-l~~~~~~~~~~~~g~l~f 348 (380)
.+|..|--.++ .+.++.+ .+. ...+| ...|.+. ..+++| .++.++ . ++.+ ++ .++ ..+..
T Consensus 149 ---I~~~tI~~li~~~~~~~~~iv~t~~~~~~~~~~-~~ygrv~vv~~~~g--~alyfsr~~Ipe~-kd-~~~-~~~~i- 218 (293)
T PLN02917 149 ---IEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDA-SDPNRVKCVVDNQG--YAIYFSRGLIPYN-KS-GKV-NPQFP- 218 (293)
T ss_pred ---CCHHHHHHHHHHHHhcCCceEEEEeeecCHHHh-cCCCceEEEECCCC--eEEEeecCcCCcC-CC-ccc-ccccc-
Confidence 45666554432 3333322 222 22334 4457664 233356 344445 3 3321 11 111 11111
Q ss_pred ccccccchhccHHHHHHHH
Q 016922 349 CWSNVCLHMFTLDFLNQVA 367 (380)
Q Consensus 349 ~~gNi~~~~f~l~fL~~~~ 367 (380)
...|++++.|+.++|....
T Consensus 219 ~~~n~Giy~f~~~~L~~l~ 237 (293)
T PLN02917 219 YLLHLGIQSYDAKFLKIYP 237 (293)
T ss_pred eEEEEEEEEeCHHHHHHHH
Confidence 2369999999999999553
No 69
>cd02516 CDP-ME_synthetase CDP-ME synthetase is involved in mevalonate-independent isoprenoid production. 4-diphosphocytidyl-2-methyl-D-erythritol synthase (CDP-ME), also called 2C-methyl-d-erythritol 4-phosphate cytidylyltransferase catalyzes the third step in the alternative (non-mevalonate) pathway of Isopentenyl diphosphate (IPP) biosynthesis: the formation of 4-diphosphocytidyl-2C-methyl-D-erythritol from CTP and 2C-methyl-D-erythritol 4-phosphate. This mevalonate independent pathway that utilizes pyruvate and glyceraldehydes 3-phosphate as starting materials for production of IPP occurs in a variety of bacteria, archaea and plant cells, but is absent in mammals. Thus, CDP-ME synthetase is an attractive targets for the structure-based design of selective antibacterial, herbicidal and antimalarial drugs.
Probab=98.21 E-value=4.8e-05 Score=70.05 Aligned_cols=40 Identities=30% Similarity=0.653 Sum_probs=35.7
Q ss_pred EEEEEecCCCccccCCCCCCccccccCCCCCccHHHHHHHHHH
Q 016922 120 LAVLLLSGGQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILC 162 (380)
Q Consensus 120 vavvlLAGG~GTRLg~~~PKg~~~i~l~s~ksllq~~~e~i~~ 162 (380)
+++|+||||.|+|+|...||.+.|+ .|||++++.++++..
T Consensus 1 ~~~vILAaG~s~R~~~~~~K~l~~i---~Gkpll~~~i~~l~~ 40 (218)
T cd02516 1 VAAIILAAGSGSRMGADIPKQFLEL---GGKPVLEHTLEAFLA 40 (218)
T ss_pred CEEEEECCcccccCCCCCCcceeEE---CCeEHHHHHHHHHhc
Confidence 4689999999999987789999999 799999999998763
No 70
>PF12804 NTP_transf_3: MobA-like NTP transferase domain; PDB: 3FWW_A 2XME_D 2XMH_C 2DPW_A 2WAW_A 2OI5_B 1HV9_B 1FWY_A 2OI6_A 2OI7_B ....
Probab=98.18 E-value=3e-05 Score=67.97 Aligned_cols=106 Identities=20% Similarity=0.389 Sum_probs=67.7
Q ss_pred EEEecCCCccccCCCCCCccccccCCCCCccHHHHHHHHHHHHHHHHhhhcCCCCCCCCceeEEEEcCCCchHHHHHHHh
Q 016922 122 VLLLSGGQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRKYFE 201 (380)
Q Consensus 122 vvlLAGG~GTRLg~~~PKg~~~i~l~s~ksllq~~~e~i~~l~~la~~~~~~~~~~~~~~ip~~IMTS~~t~e~t~~~f~ 201 (380)
+||||||.|+|||. ||.+.++ .|+|++++.++.+... ++ =+++|.+.. +++.+++.
T Consensus 1 ~vILa~G~s~Rmg~--~K~l~~i---~g~~li~~~l~~l~~~---------------~~-~~Ivvv~~~---~~~~~~~~ 56 (160)
T PF12804_consen 1 AVILAAGKSSRMGG--PKALLPI---GGKPLIERVLEALREA---------------GV-DDIVVVTGE---EEIYEYLE 56 (160)
T ss_dssp EEEEESSSCGGGTS--CGGGSEE---TTEEHHHHHHHHHHHH---------------TE-SEEEEEEST---HHHHHHHT
T ss_pred CEEECCcCcccCCC--CccceeE---CCccHHHHHHHHhhcc---------------CC-ceEEEecCh---HHHHHHHh
Confidence 58999999999985 9999998 9999999999987641 21 134555555 45666664
Q ss_pred hcCCCCCCCCceEEEEeCCeeeEecCCcccccCCCccccccCCCchhhHHHhhCChHHHHHHC-CCeEEEEEcCCCcccc
Q 016922 202 GHKYFGLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATR-GIKYIDCYGVDNALVR 280 (380)
Q Consensus 202 ~~~~FGl~~~~V~~f~Q~~~P~~~~~gki~l~~~~~i~~~P~GnGgi~~aL~~~g~l~~l~~~-Gi~yi~v~~vDN~L~~ 280 (380)
. ++ +.++ ..|.-+.|...+|. ..+... +.++++|..+|-++
T Consensus 57 ~---~~-----~~~v-----------------------~~~~~~~G~~~sl~-----~a~~~~~~~~~vlv~~~D~p~-- 98 (160)
T PF12804_consen 57 R---YG-----IKVV-----------------------VDPEPGQGPLASLL-----AALSQLPSSEPVLVLPCDQPF-- 98 (160)
T ss_dssp T---TT-----SEEE-----------------------E-STSSCSHHHHHH-----HHHHTSTTSSEEEEEETTETT--
T ss_pred c---cC-----ceEE-----------------------EeccccCChHHHHH-----HHHHhcccCCCcEEEeCCccc--
Confidence 3 22 2222 11221244444432 333333 78999999999986
Q ss_pred cCCHHHHHHH
Q 016922 281 VADPTFLGYF 290 (380)
Q Consensus 281 ~~Dp~~lG~~ 290 (380)
.++..+-..
T Consensus 99 -~~~~~l~~l 107 (160)
T PF12804_consen 99 -LSPELLRRL 107 (160)
T ss_dssp -S-HHHHHHH
T ss_pred -cCHHHHHHH
Confidence 456655443
No 71
>COG1213 Predicted sugar nucleotidyltransferases [Cell envelope biogenesis, outer membrane]
Probab=98.14 E-value=3.3e-05 Score=72.86 Aligned_cols=67 Identities=19% Similarity=0.470 Sum_probs=57.1
Q ss_pred EEEEEecCCCccccCCCCCCccccccCCCCCccHHHHHHHHHHHHHHHHhhhcCCCCCCCCceeEEEEcCCCchHHHHHH
Q 016922 120 LAVLLLSGGQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRKY 199 (380)
Q Consensus 120 vavvlLAGG~GTRLg~~~PKg~~~i~l~s~ksllq~~~e~i~~l~~la~~~~~~~~~~~~~~ip~~IMTS~~t~e~t~~~ 199 (380)
+.+||||.|.|+|||.+.||++..+ .|++++.+.+++|.. .++ --.+|.|+++..+.+.+|
T Consensus 4 ~kavILAAG~GsRlg~~~PK~Lvev---~gr~ii~~~i~~L~~---------------~gi-~e~vvV~~g~~~~lve~~ 64 (239)
T COG1213 4 MKAVILAAGFGSRLGPDIPKALVEV---GGREIIYRTIENLAK---------------AGI-TEFVVVTNGYRADLVEEF 64 (239)
T ss_pred eeEEEEecccccccCCCCCchhhhc---CCeEeHHHHHHHHHH---------------cCC-ceEEEEeccchHHHHHHH
Confidence 5689999999999999999999877 699999999998874 121 246899999999999999
Q ss_pred HhhcCC
Q 016922 200 FEGHKY 205 (380)
Q Consensus 200 f~~~~~ 205 (380)
+.++++
T Consensus 65 l~~~~~ 70 (239)
T COG1213 65 LKKYPF 70 (239)
T ss_pred HhcCCc
Confidence 998664
No 72
>TIGR00453 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase. Members of this protein family are 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, the IspD protein of the deoxyxylulose pathway of IPP biosynthesis. In about twenty percent of bacterial genomes, this protein occurs as IspDF, a bifunctional fusion protein.
Probab=98.13 E-value=0.0001 Score=68.05 Aligned_cols=39 Identities=28% Similarity=0.619 Sum_probs=34.9
Q ss_pred EEEEecCCCccccCCCCCCccccccCCCCCccHHHHHHHHHH
Q 016922 121 AVLLLSGGQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILC 162 (380)
Q Consensus 121 avvlLAGG~GTRLg~~~PKg~~~i~l~s~ksllq~~~e~i~~ 162 (380)
++|+||||.|||+|.+.||.++++ .|||++++.++++..
T Consensus 1 ~aiIlAaG~s~R~~~~~~K~l~~l---~gkpll~~~l~~l~~ 39 (217)
T TIGR00453 1 SAVIPAAGRGTRFGSGVPKQYLEL---GGRPLLEHTLDAFLA 39 (217)
T ss_pred CEEEEcCcccccCCCCCCccEeEE---CCeEHHHHHHHHHhc
Confidence 368999999999998889999998 799999999998763
No 73
>cd04182 GT_2_like_f GT_2_like_f is a subfamily of the glycosyltransferase family 2 (GT-2) with unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=98.12 E-value=1.8e-05 Score=70.41 Aligned_cols=38 Identities=26% Similarity=0.543 Sum_probs=33.9
Q ss_pred EEEEEecCCCccccCCCCCCccccccCCCCCccHHHHHHHHHH
Q 016922 120 LAVLLLSGGQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILC 162 (380)
Q Consensus 120 vavvlLAGG~GTRLg~~~PKg~~~i~l~s~ksllq~~~e~i~~ 162 (380)
+++|+||||.|+|||. ||.+.++ .|||++++.++++..
T Consensus 1 ~~~vIlAgG~s~R~g~--~K~l~~~---~g~~li~~~i~~l~~ 38 (186)
T cd04182 1 IAAIILAAGRSSRMGG--NKLLLPL---DGKPLLRHALDAALA 38 (186)
T ss_pred CeEEEECCCCCCCCCC--CceeCee---CCeeHHHHHHHHHHh
Confidence 4689999999999985 9999998 899999999998764
No 74
>PRK13385 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Provisional
Probab=98.08 E-value=4.9e-05 Score=71.27 Aligned_cols=120 Identities=13% Similarity=0.239 Sum_probs=75.3
Q ss_pred CEEEEEecCCCccccCCCCCCccccccCCCCCccHHHHHHHHHHHHHHHHhhhcCCCCCCCCceeEEEEcCCCchHHHHH
Q 016922 119 KLAVLLLSGGQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRK 198 (380)
Q Consensus 119 kvavvlLAGG~GTRLg~~~PKg~~~i~l~s~ksllq~~~e~i~~l~~la~~~~~~~~~~~~~~ip~~IMTS~~t~e~t~~ 198 (380)
.+++|+||||.|+|+|.+.||.++++ .|||++++.++++... .. --..+|.|+......+.+
T Consensus 2 ~~~~iIlAaG~g~R~g~~~~K~l~~l---~gkpll~~~i~~~~~~--------------~~-~~~ivVv~~~~~~~~~~~ 63 (230)
T PRK13385 2 NYELIFLAAGQGKRMNAPLNKMWLDL---VGEPIFIHALRPFLAD--------------NR-CSKIIIVTQAQERKHVQD 63 (230)
T ss_pred ceEEEEECCeeccccCCCCCcceeEE---CCeEHHHHHHHHHHcC--------------CC-CCEEEEEeChhhHHHHHH
Confidence 37899999999999998889999999 7999999999876531 01 123556666555555666
Q ss_pred HHhhcCCCCCCCCceEEEEeCCeeeEecCCcccccCCCccccccCCCchhhHHHhhCChHHHHHHCCCeEEEEEcCCCcc
Q 016922 199 YFEGHKYFGLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGVDNAL 278 (380)
Q Consensus 199 ~f~~~~~FGl~~~~V~~f~Q~~~P~~~~~gki~l~~~~~i~~~P~GnGgi~~aL~~~g~l~~l~~~Gi~yi~v~~vDN~L 278 (380)
++++ +|.....+ ..-++|.|.. .+++. | ++.+. ....+.++..|-++
T Consensus 64 ~~~~---~~~~~~~~-------------------------~~v~~g~~r~-~sv~~-g-l~~~~--~~d~vli~~~d~P~ 110 (230)
T PRK13385 64 LMKQ---LNVADQRV-------------------------EVVKGGTERQ-ESVAA-G-LDRIG--NEDVILVHDGARPF 110 (230)
T ss_pred HHHh---cCcCCCce-------------------------EEcCCCchHH-HHHHH-H-HHhcc--CCCeEEEccCCCCC
Confidence 6654 33221111 1124555543 22211 1 22221 13567888999998
Q ss_pred cccCCHHHHHHHHH
Q 016922 279 VRVADPTFLGYFID 292 (380)
Q Consensus 279 ~~~~Dp~~lG~~~~ 292 (380)
++|..+.-+++
T Consensus 111 ---i~~~~i~~li~ 121 (230)
T PRK13385 111 ---LTQDIIDRLLE 121 (230)
T ss_pred ---CCHHHHHHHHH
Confidence 56777766544
No 75
>cd02513 CMP-NeuAc_Synthase CMP-NeuAc_Synthase activates N-acetylneuraminic acid by adding CMP moiety. CMP-N-acetylneuraminic acid synthetase (CMP-NeuAc synthetase) or acylneuraminate cytidylyltransferase catalyzes the transfer the CMP moiety of CTP to the anomeric hydroxyl group of NeuAc in the presence of Mg++. It is the second to last step in the sialylation of the oligosaccharide component of glycoconjugates by providing the activated sugar-nucleotide cytidine 5'-monophosphate N-acetylneuraminic acid (CMP-Neu5Ac), the substrate for sialyltransferases. Eukaryotic CMP-NeuAc synthetases are predominantly located in the nucleus. The activated CMP-Neu5Ac diffuses from the nucleus into the cytoplasm.
Probab=98.07 E-value=0.00013 Score=67.32 Aligned_cols=183 Identities=15% Similarity=0.156 Sum_probs=99.0
Q ss_pred CEEEEEecCCCccccCCCCCCccccccCCCCCccHHHHHHHHHHHHHHHHhhhcCCCCCCCCceeEEEEcCCCchHHHHH
Q 016922 119 KLAVLLLSGGQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRK 198 (380)
Q Consensus 119 kvavvlLAGG~GTRLg~~~PKg~~~i~l~s~ksllq~~~e~i~~l~~la~~~~~~~~~~~~~~ip~~IMTS~~t~e~t~~ 198 (380)
++++|+||||.|+||+ .|.+.++ .|||++++.++.+.+. + .+..++.++ .++.+.+
T Consensus 1 ~~~~iIlA~G~s~R~~---~K~l~~l---~Gkpll~~~l~~l~~~---------------~-~~~~IvV~~--~~~~i~~ 56 (223)
T cd02513 1 KILAIIPARGGSKGIP---GKNIRPL---GGKPLIAWTIEAALES---------------K-LFDRVVVST--DDEEIAE 56 (223)
T ss_pred CeEEEEecCCCCCCCC---Ccccchh---CCccHHHHHHHHHHhC---------------C-CCCEEEEEC--CcHHHHH
Confidence 5789999999999995 4989888 8999999999987741 1 122344443 3567777
Q ss_pred HHhhcCCCCCCCCceEEEEeCCeeeEecCCcccccCCCccccccCCCchhhHHHhhCChHHHHHHC--CCeEEEEEcCCC
Q 016922 199 YFEGHKYFGLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATR--GIKYIDCYGVDN 276 (380)
Q Consensus 199 ~f~~~~~FGl~~~~V~~f~Q~~~P~~~~~gki~l~~~~~i~~~P~GnGgi~~aL~~~g~l~~l~~~--Gi~yi~v~~vDN 276 (380)
++.+ +|.. + .+. .+........|.++..... ++.+... +.+++++++.|.
T Consensus 57 ~~~~---~~~~---~-~~~----------------~~~~~~~~~~~~~~~i~~~-----l~~l~~~~~~~d~vlv~~~D~ 108 (223)
T cd02513 57 VARK---YGAE---V-PFL----------------RPAELATDTASSIDVILHA-----LDQLEELGRDFDIVVLLQPTS 108 (223)
T ss_pred HHHH---hCCC---c-eee----------------CChHHCCCCCCcHHHHHHH-----HHHHHHhCCCCCEEEEeCCCC
Confidence 7764 3331 0 110 0011112222333433322 2334332 357899999999
Q ss_pred cccccCCHHHHHHH----HHhCCceEEEEeecCCCCcccceEEEEcCCCCeEEEEecccChhhhhhhccCCCcceecccc
Q 016922 277 ALVRVADPTFLGYF----IDKGVSAGAKVVRKAYPQEKVGVFVRRGKGGPLTVVEYSELDPSLASAINQETGRLRFCWSN 352 (380)
Q Consensus 277 ~L~~~~Dp~~lG~~----~~~~~d~~~kvv~k~~p~e~vGvl~~~~~~g~~~vvEYsel~~~~~~~~~~~~g~l~f~~gN 352 (380)
++. +|..+-.+ ...++++.+.+++... ......... .+| ..++-|.+-...-+. +. .-.| .-|
T Consensus 109 P~i---~~~~i~~~i~~~~~~~~~~~~~~~~~~~--~~~~~~~~~-~~~-~~~~~~~~~~~~~~q----~~-~~~~-~~n 175 (223)
T cd02513 109 PLR---SAEDIDEAIELLLSEGADSVFSVTEFHR--FPWRALGLD-DNG-LEPVNYPEDKRTRRQ----DL-PPAY-HEN 175 (223)
T ss_pred CcC---CHHHHHHHHHHHHhCCCCEEEEEEecCc--CcHHheeec-cCC-ceeccCcccccCCcC----CC-hhHe-eEC
Confidence 984 45544333 3456777766665432 222222222 233 344444322111111 11 1122 246
Q ss_pred ccchhccHHHHHHH
Q 016922 353 VCLHMFTLDFLNQV 366 (380)
Q Consensus 353 i~~~~f~l~fL~~~ 366 (380)
.+.++++.+++.+.
T Consensus 176 ~~~y~~~~~~~~~~ 189 (223)
T cd02513 176 GAIYIAKREALLES 189 (223)
T ss_pred CEEEEEEHHHHHhc
Confidence 67788888877664
No 76
>COG0746 MobA Molybdopterin-guanine dinucleotide biosynthesis protein A [Coenzyme metabolism]
Probab=98.02 E-value=4.3e-05 Score=70.51 Aligned_cols=109 Identities=17% Similarity=0.339 Sum_probs=72.8
Q ss_pred CEEEEEecCCCccccCCCCCCccccccCCCCCccHHHHHHHHHHHHHHHHhhhcCCCCCCCCceeEEEEcCCCchHHHHH
Q 016922 119 KLAVLLLSGGQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRK 198 (380)
Q Consensus 119 kvavvlLAGG~GTRLg~~~PKg~~~i~l~s~ksllq~~~e~i~~l~~la~~~~~~~~~~~~~~ip~~IMTS~~t~e~t~~ 198 (380)
.+.+|+||||+++|| .+|+++++ .|++++++.++++.. .+. . ++.++..+.+.
T Consensus 4 ~~~~vILAGG~srRm---~dK~l~~~---~g~~lie~v~~~L~~----------------~~~-~-vvi~~~~~~~~--- 56 (192)
T COG0746 4 PMTGVILAGGKSRRM---RDKALLPL---NGRPLIEHVIDRLRP----------------QVD-V-VVISANRNQGR--- 56 (192)
T ss_pred CceEEEecCCccccc---ccccccee---CCeEHHHHHHHHhcc----------------cCC-E-EEEeCCCchhh---
Confidence 678999999999999 88999998 999999999998873 222 3 34444444332
Q ss_pred HHhhcCCCCCCCCceEEEEeCCeeeEecCCcccccCCCccccccCCCchhhHHHhhCChHHHHHHCCCeEEEEEcCCCcc
Q 016922 199 YFEGHKYFGLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGVDNAL 278 (380)
Q Consensus 199 ~f~~~~~FGl~~~~V~~f~Q~~~P~~~~~gki~l~~~~~i~~~P~GnGgi~~aL~~~g~l~~l~~~Gi~yi~v~~vDN~L 278 (380)
|. .||++. +.....|. |-.. |++.-|..-+-++++|..+|.++
T Consensus 57 ~~----~~g~~v---------------------------v~D~~~~~-GPL~-----Gi~~al~~~~~~~~~v~~~D~P~ 99 (192)
T COG0746 57 YA----EFGLPV---------------------------VPDELPGF-GPLA-----GILAALRHFGTEWVLVLPCDMPF 99 (192)
T ss_pred hh----ccCCce---------------------------eecCCCCC-CCHH-----HHHHHHHhCCCCeEEEEecCCCC
Confidence 22 355421 12333443 3333 33444555567899999999997
Q ss_pred cccCCHHHHHHHHHhC
Q 016922 279 VRVADPTFLGYFIDKG 294 (380)
Q Consensus 279 ~~~~Dp~~lG~~~~~~ 294 (380)
..|.++-+..+..
T Consensus 100 ---i~~~lv~~l~~~~ 112 (192)
T COG0746 100 ---IPPELVERLLSAF 112 (192)
T ss_pred ---CCHHHHHHHHHhh
Confidence 5677777765543
No 77
>TIGR00466 kdsB 3-deoxy-D-manno-octulosonate cytidylyltransferase.
Probab=97.91 E-value=0.00059 Score=64.70 Aligned_cols=180 Identities=18% Similarity=0.209 Sum_probs=101.5
Q ss_pred EEEecCCCccccCCCCCCccccccCCCCCccHHHHHHHHHHHHHHHHhhhcCCCCCCCCceeEEEEcCCCchHHHHHHHh
Q 016922 122 VLLLSGGQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRKYFE 201 (380)
Q Consensus 122 vvlLAGG~GTRLg~~~PKg~~~i~l~s~ksllq~~~e~i~~l~~la~~~~~~~~~~~~~~ip~~IMTS~~t~e~t~~~f~ 201 (380)
+||+|+|.||||+ +|.+.++ .|||++++.++++.+ .++ =..+|-|. ++.+.+.++
T Consensus 2 ~iIpA~g~s~R~~---~K~L~~l---~GkPli~~~le~~~~---------------~~~-d~VvVvt~---~~~i~~~~~ 56 (238)
T TIGR00466 2 VIIPARLASSRLP---GKPLEDI---FGKPMIVHVAENANE---------------SGA-DRCIVATD---DESVAQTCQ 56 (238)
T ss_pred EEEecCCCCCCCC---CCeeccc---CCcCHHHHHHHHHHh---------------CCC-CeEEEEeC---HHHHHHHHH
Confidence 6899999999994 7999988 899999999998653 111 12344443 356777776
Q ss_pred hcCCCCCCCCceEEEEeCCeeeEecCCcccccCCCccccccCCCchhhHHHhhCChHHHHHHCCCeEEEEEcCCCccccc
Q 016922 202 GHKYFGLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGVDNALVRV 281 (380)
Q Consensus 202 ~~~~FGl~~~~V~~f~Q~~~P~~~~~gki~l~~~~~i~~~P~GnGgi~~aL~~~g~l~~l~~~Gi~yi~v~~vDN~L~~~ 281 (380)
+ ||.. +. + . ....+.|...+..++. .+.....+++.+++.|.+|
T Consensus 57 ~---~g~~---~v-~----------------~----~~~~~~Gt~r~~~~~~------~l~~~~~d~Vli~~gD~Pl--- 100 (238)
T TIGR00466 57 K---FGIE---VC-M----------------T----SKHHNSGTERLAEVVE------KLALKDDERIVNLQGDEPF--- 100 (238)
T ss_pred H---cCCE---EE-E----------------e----CCCCCChhHHHHHHHH------HhCCCCCCEEEEEcCCcCc---
Confidence 4 4432 11 0 0 0112455555555442 1111234689999999998
Q ss_pred CCHHHHHHHHH----hCCceEEEEeecCCCCcc----cceEEEEcCCCCeEEEEecc--cC--hh-hhhhhccCCCccee
Q 016922 282 ADPTFLGYFID----KGVSAGAKVVRKAYPQEK----VGVFVRRGKGGPLTVVEYSE--LD--PS-LASAINQETGRLRF 348 (380)
Q Consensus 282 ~Dp~~lG~~~~----~~~d~~~kvv~k~~p~e~----vGvl~~~~~~g~~~vvEYse--l~--~~-~~~~~~~~~g~l~f 348 (380)
++|..|-.+++ .++++++-+++..++.+. +.-++. +.+|+ ..=++. +| .. ......+ .+.. |
T Consensus 101 i~~~~I~~li~~~~~~~~~~a~~~~~~~d~~~~~~p~~vk~v~-~~~g~--alyfsr~~ip~~R~~~~~~~tp-q~~~-~ 175 (238)
T TIGR00466 101 IPKEIIRQVADNLATKNVPMAALAVKIHDAEEAFNPNAVKVVL-DSQGY--ALYFSRSLIPFDRDFFAKRQTP-VGDN-L 175 (238)
T ss_pred CCHHHHHHHHHHHhcCCCCEEEEeeecCCHHHccCCCceEEEe-CCCCe--EEEecCCCCCCCCCcccccccc-cccc-e
Confidence 56777765543 346777777776553331 112222 23452 111122 11 11 0000011 1111 2
Q ss_pred ccccccchhccHHHHHHHHh
Q 016922 349 CWSNVCLHMFTLDFLNQVAN 368 (380)
Q Consensus 349 ~~gNi~~~~f~l~fL~~~~~ 368 (380)
..|++++-|+.+||++.++
T Consensus 176 -~~h~Giy~~~~~~L~~~~~ 194 (238)
T TIGR00466 176 -LRHIGIYGYRAGFIEEYVA 194 (238)
T ss_pred -eEEEEEEeCCHHHHHHHHh
Confidence 3599999999999999876
No 78
>TIGR03310 matur_ygfJ molybdenum hydroxylase accessory protein, YgfJ family. Members of this protein family are probable accessory proteins for the biosynthesis of enzymes related to xanthine dehydrogenase. Comparative genomics suggests a role in the maturation of selenium-dependent molybdenum hydroxylases, although a tenuous alternative hypothesis is a role for this protein (with a requirement for SelD, the selenium donor protein in the selenocysteine and selenouridine biosynthesis pathways) metabolizing a selenium-containing substrate such as selenate.
Probab=97.82 E-value=0.00015 Score=64.96 Aligned_cols=36 Identities=22% Similarity=0.449 Sum_probs=32.3
Q ss_pred EEEecCCCccccCCCCCCccccccCCCCCccHHHHHHHHHH
Q 016922 122 VLLLSGGQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILC 162 (380)
Q Consensus 122 vvlLAGG~GTRLg~~~PKg~~~i~l~s~ksllq~~~e~i~~ 162 (380)
+||||||.|+||| .||.++++ .|+|++++.++.+.+
T Consensus 2 ~iIla~G~s~R~g--~~K~ll~~---~g~pll~~~i~~l~~ 37 (188)
T TIGR03310 2 AIILAAGLSSRMG--QNKLLLPY---KGKTILEHVVDNALR 37 (188)
T ss_pred eEEECCCCcccCC--CCceeccc---CCeeHHHHHHHHHHH
Confidence 6899999999998 58999988 799999999988764
No 79
>TIGR00454 conserved hypothetical protein TIGR00454. At this time this gene appears to be present only in Archea
Probab=97.81 E-value=3.7e-05 Score=70.20 Aligned_cols=62 Identities=27% Similarity=0.454 Sum_probs=47.2
Q ss_pred EEEEEecCCCccccCCCCCCccccccCCCCCccHHHHHHHHHHHHHHHHhhhcCCCCCCCCceeEEEEcCCCchHHHHHH
Q 016922 120 LAVLLLSGGQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRKY 199 (380)
Q Consensus 120 vavvlLAGG~GTRLg~~~PKg~~~i~l~s~ksllq~~~e~i~~l~~la~~~~~~~~~~~~~~ip~~IMTS~~t~e~t~~~ 199 (380)
+.+++||||.|||||. .||.++++ .|++++++.++.+.. .++ =..+|.++ +.++.++.+
T Consensus 1 m~aIILAgG~gsRmg~-~~K~Ll~i---~GkplI~~vi~~l~~---------------~~i-~~I~Vv~~-~~~~~~~~~ 59 (183)
T TIGR00454 1 MDALIMAGGKGTRLGG-VEKPLIEV---CGRCLIDHVLSPLLK---------------SKV-NNIIIATS-PHTPKTEEY 59 (183)
T ss_pred CeEEEECCccCccCCC-CCceEeEE---CCEEHHHHHHHHHHh---------------CCC-CEEEEEeC-CCHHHHHHH
Confidence 3578999999999975 79999998 799999999998763 121 12355555 467788888
Q ss_pred Hhh
Q 016922 200 FEG 202 (380)
Q Consensus 200 f~~ 202 (380)
+++
T Consensus 60 l~~ 62 (183)
T TIGR00454 60 INS 62 (183)
T ss_pred Hhh
Confidence 875
No 80
>PRK15460 cpsB mannose-1-phosphate guanyltransferase; Provisional
Probab=97.77 E-value=0.00097 Score=69.71 Aligned_cols=196 Identities=16% Similarity=0.181 Sum_probs=114.1
Q ss_pred CEEEEEecCCCccccC----CCCCCccccccCCCCCccHHHHHHHHHHHHHHHHhhhcCCCCCCCCceeEEEEcCCCchH
Q 016922 119 KLAVLLLSGGQGTRLG----SSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDD 194 (380)
Q Consensus 119 kvavvlLAGG~GTRLg----~~~PKg~~~i~l~s~ksllq~~~e~i~~l~~la~~~~~~~~~~~~~~ip~~IMTS~~t~e 194 (380)
++-.||||||.||||- ...||.+.|+ -.++|+||..++|+..+ +..-++ |.|+..-.+
T Consensus 5 ~~~~vIlaGG~GtRlwPlS~~~~PKq~l~l--~~~~sllq~t~~r~~~~---------------~~~~~i-ivt~~~~~~ 66 (478)
T PRK15460 5 KLYPVVMAGGSGSRLWPLSRVLYPKQFLCL--KGDLTMLQTTICRLNGV---------------ECESPV-VICNEQHRF 66 (478)
T ss_pred ceEEEEECCCCccccccCCCCCCCcceeEC--CCCCCHHHHHHHHHHhC---------------CCCCcE-EEeCHHHHH
Confidence 4788999999999996 3359999887 23489999999987641 122234 668877677
Q ss_pred HHHHHHhhcCCCCCCCCceEEEEeCCeeeEecCCcccccCCCccccccCCCchhhH-HHhhCChHHHHHHC--C-CeEEE
Q 016922 195 ATRKYFEGHKYFGLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYS-ALKSSKLLEDMATR--G-IKYID 270 (380)
Q Consensus 195 ~t~~~f~~~~~FGl~~~~V~~f~Q~~~P~~~~~gki~l~~~~~i~~~P~GnGgi~~-aL~~~g~l~~l~~~--G-i~yi~ 270 (380)
.+++-+.+.+. ... .+...|.|..=.=. +|.. ..+.++ + -.-+.
T Consensus 67 ~v~~ql~~~~~---~~~-------------------------~ii~EP~~rnTApaialaa----~~~~~~~~~~~~~v~ 114 (478)
T PRK15460 67 IVAEQLRQLNK---LTE-------------------------NIILEPAGRNTAPAIALAA----LAAKRHSPESDPLML 114 (478)
T ss_pred HHHHHHHhcCC---ccc-------------------------cEEecCCCCChHHHHHHHH----HHHHHhcCCCCCeEE
Confidence 77777765221 111 12233444222111 1111 112222 2 24678
Q ss_pred EEcCCCcccccCCH-HHHHHH------HHhCCceEEEEeecCCCCcccceEEEEcC---C---CCeEEEEecccChh-hh
Q 016922 271 CYGVDNALVRVADP-TFLGYF------IDKGVSAGAKVVRKAYPQEKVGVFVRRGK---G---GPLTVVEYSELDPS-LA 336 (380)
Q Consensus 271 v~~vDN~L~~~~Dp-~~lG~~------~~~~~d~~~kvv~k~~p~e~vGvl~~~~~---~---g~~~vvEYsel~~~-~~ 336 (380)
|+..|... .|. .|.... ++.+.=+++=+ +-+.|...+|=|-.-.. + +-..|..+.|-|+. .+
T Consensus 115 vlPaDH~I---~d~~~F~~~i~~A~~~A~~~~lvt~GI-~Pt~PeTgyGYI~~g~~~~~~~~~~~~~V~~F~EKPd~~tA 190 (478)
T PRK15460 115 VLAADHVI---ADEDAFRAAVRNAMPYAEAGKLVTFGI-VPDLPETGYGYIRRGEVSAGEQDTVAFEVAQFVEKPNLETA 190 (478)
T ss_pred Eecccccc---CCHHHHHHHHHHHHHHHhcCCEEEEec-CCCCCCCCCCeEEeCCccccccccCceEeeEEEeCCCHHHH
Confidence 89999875 333 233221 22333333444 44578899998865311 0 33578888999885 44
Q ss_pred hhhccCCCcceeccccccchhccHHHHHHHHhcccc
Q 016922 337 SAINQETGRLRFCWSNVCLHMFTLDFLNQVANGLEK 372 (380)
Q Consensus 337 ~~~~~~~g~l~f~~gNi~~~~f~l~fL~~~~~~~~~ 372 (380)
+..- ++|.. || |.++++|+.+.+-+..+.+.+
T Consensus 191 ~~yl-~~G~y-~W--NsGiF~~~a~~~l~~~~~~~P 222 (478)
T PRK15460 191 QAYV-ASGEY-YW--NSGMFLFRAGRYLEELKKYRP 222 (478)
T ss_pred HHHH-HcCCE-EE--ecceeheeHHHHHHHHHHHCH
Confidence 4332 35543 34 788889999888776665543
No 81
>cd02503 MobA MobA catalyzes the formation of molybdopterin guanine dinucleotide. The prokaryotic enzyme molybdopterin-guanine dinucleotide biosynthesis protein A (MobA). All mononuclear molybdoenzymes bind molybdenum in complex with an organic cofactor termed molybdopterin (MPT). In many bacteria, including Escherichia coli, molybdopterin can be further modified by attachment of a GMP group to the terminal phosphate of molybdopterin to form molybdopterin guanine dinucleotide (MGD). This GMP attachment step is catalyzed by MobA, by linking a guanosine 5'-phosphate to MPT forming molybdopterin guanine dinucleotide. This reaction requires GTP, MgCl2, and the MPT form of the cofactor. It is a reaction unique to prokaryotes, and therefore may represent a potential drug target.
Probab=97.72 E-value=0.00038 Score=62.24 Aligned_cols=37 Identities=30% Similarity=0.568 Sum_probs=33.2
Q ss_pred EEEEecCCCccccCCCCCCccccccCCCCCccHHHHHHHHHH
Q 016922 121 AVLLLSGGQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILC 162 (380)
Q Consensus 121 avvlLAGG~GTRLg~~~PKg~~~i~l~s~ksllq~~~e~i~~ 162 (380)
++|+||||.|+|||. ||.++++ .|+|++++.++++.+
T Consensus 2 ~~iILAgG~s~Rmg~--~K~ll~~---~g~~ll~~~i~~l~~ 38 (181)
T cd02503 2 TGVILAGGKSRRMGG--DKALLEL---GGKPLLEHVLERLKP 38 (181)
T ss_pred cEEEECCCccccCCC--CceeeEE---CCEEHHHHHHHHHHh
Confidence 579999999999986 9999998 799999999998764
No 82
>PRK09382 ispDF bifunctional 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase/2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase protein; Provisional
Probab=97.70 E-value=0.00091 Score=67.94 Aligned_cols=41 Identities=22% Similarity=0.441 Sum_probs=37.2
Q ss_pred CEEEEEecCCCccccCCCCCCccccccCCCCCccHHHHHHHHHH
Q 016922 119 KLAVLLLSGGQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILC 162 (380)
Q Consensus 119 kvavvlLAGG~GTRLg~~~PKg~~~i~l~s~ksllq~~~e~i~~ 162 (380)
++++|+||||.|+|+|...||.++++ .|+|++++.++.+.+
T Consensus 5 ~v~aIILAAG~GsRmg~~~pKqll~l---~GkPll~~tl~~l~~ 45 (378)
T PRK09382 5 DISLVIVAAGRSTRFSAEVKKQWLRI---GGKPLWLHVLENLSS 45 (378)
T ss_pred cceEEEECCCCCccCCCCCCeeEEEE---CCeeHHHHHHHHHhc
Confidence 58899999999999998889999998 799999998887763
No 83
>PF01128 IspD: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; InterPro: IPR001228 4-diphosphocytidyl-2C-methyl-D-erythritol synthase, a bacterial ispD protein, catalyzes the third step of the deoxyxylulose-5-phosphate pathway (DXP) of isoprenoid biosynthesis; the formation of 4-diphosphocytidyl-2C-methyl-D-erythritol from CTP and 2C-methyl-D-erythritol 4-phosphate []. The isoprenoid pathway is a well known target for anti-infective drug development [, ].; GO: 0003824 catalytic activity, 0008299 isoprenoid biosynthetic process; PDB: 1VGW_F 1VGZ_A 1W77_A 2YC3_A 2YCM_A 2YC5_A 1VGU_A 3N9W_B 1I52_A 1H3M_B ....
Probab=97.66 E-value=9.1e-05 Score=69.86 Aligned_cols=64 Identities=25% Similarity=0.481 Sum_probs=48.0
Q ss_pred EEEEEecCCCccccCCCCCCccccccCCCCCccHHHHHHHHHHHHHHHHhhhcCCCCCCCCcee-EEEEcCCCchHHHHH
Q 016922 120 LAVLLLSGGQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIH-WYIMTSPFTDDATRK 198 (380)
Q Consensus 120 vavvlLAGG~GTRLg~~~PKg~~~i~l~s~ksllq~~~e~i~~l~~la~~~~~~~~~~~~~~ip-~~IMTS~~t~e~t~~ 198 (380)
|++|+||||.|+|+|.+.||-.+++ .|||+|++-++.+.+. ..|- ++|.++....+.+++
T Consensus 1 V~aIilAaG~G~R~g~~~pKQf~~l---~Gkpvl~~tl~~f~~~----------------~~i~~Ivvv~~~~~~~~~~~ 61 (221)
T PF01128_consen 1 VAAIILAAGSGSRMGSGIPKQFLEL---GGKPVLEYTLEAFLAS----------------PEIDEIVVVVPPEDIDYVEE 61 (221)
T ss_dssp EEEEEEESS-STCCTSSS-GGGSEE---TTEEHHHHHHHHHHTT----------------TTESEEEEEESGGGHHHHHH
T ss_pred CEEEEeCCccchhcCcCCCCeeeEE---CCeEeHHHHHHHHhcC----------------CCCCeEEEEecchhHHHHHH
Confidence 6899999999999999999999988 8999999988876531 1133 445555555677787
Q ss_pred HHhh
Q 016922 199 YFEG 202 (380)
Q Consensus 199 ~f~~ 202 (380)
++.+
T Consensus 62 ~~~~ 65 (221)
T PF01128_consen 62 LLSK 65 (221)
T ss_dssp HHHH
T ss_pred hhcC
Confidence 7776
No 84
>COG0836 {ManC} Mannose-1-phosphate guanylyltransferase [Cell envelope biogenesis, outer membrane]
Probab=97.66 E-value=0.002 Score=63.45 Aligned_cols=200 Identities=17% Similarity=0.212 Sum_probs=117.5
Q ss_pred EEEEEecCCCcccc----CCCCCCccccccCCCCCccHHHHHHHHHHHHHHHHhhhcCCCCCCCCceeEEEEcCCCchHH
Q 016922 120 LAVLLLSGGQGTRL----GSSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDA 195 (380)
Q Consensus 120 vavvlLAGG~GTRL----g~~~PKg~~~i~l~s~ksllq~~~e~i~~l~~la~~~~~~~~~~~~~~ip~~IMTS~~t~e~ 195 (380)
+..||||||.|||| ....||-.+ .|.+++|+||..++|+..+.. .-..++.|+..-...
T Consensus 2 ~~pvIlaGG~GsRLWPLSR~~~PKQFl--~L~~~~Sllq~T~~R~~~l~~---------------~~~~~vVtne~~~f~ 64 (333)
T COG0836 2 MIPVILAGGSGSRLWPLSRKDYPKQFL--KLFGDLSLLQQTVKRLAFLGD---------------IEEPLVVTNEKYRFI 64 (333)
T ss_pred ceeEEEeCCCccccCCcCcccCCccce--eeCCCCcHHHHHHHHHhhcCC---------------ccCeEEEeCHHHHHH
Confidence 45799999999999 477899985 556689999999999875321 134577888777777
Q ss_pred HHHHHhhcCCCCCCCCceEEEEeCCeeeEecCCcccccCCCccccccCCCchhhHHHhhCChHHHHHHCCCeEEEEEcCC
Q 016922 196 TRKYFEGHKYFGLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGVD 275 (380)
Q Consensus 196 t~~~f~~~~~FGl~~~~V~~f~Q~~~P~~~~~gki~l~~~~~i~~~P~GnGgi~~aL~~~g~l~~l~~~Gi~yi~v~~vD 275 (380)
+++=+.+-+. ++ ..+ +...|.|-==.=.... +.+......|-.-+.|+-.|
T Consensus 65 v~eql~e~~~-----~~-------------~~~---------illEP~gRnTApAIA~--aa~~~~~~~~d~~~lVlpsD 115 (333)
T COG0836 65 VKEQLPEIDI-----EN-------------AAG---------IILEPEGRNTAPAIAL--AALSATAEGGDALVLVLPSD 115 (333)
T ss_pred HHHHHhhhhh-----cc-------------ccc---------eEeccCCCCcHHHHHH--HHHHHHHhCCCcEEEEecCc
Confidence 7776665111 10 001 3334444321111000 01222333443457888888
Q ss_pred CcccccCCHHHHHHH------HHhCCceEEEEeecCCCCcccceEEEEcC--C-CCeEEEEecccChhhhhhhccCCCcc
Q 016922 276 NALVRVADPTFLGYF------IDKGVSAGAKVVRKAYPQEKVGVFVRRGK--G-GPLTVVEYSELDPSLASAINQETGRL 346 (380)
Q Consensus 276 N~L~~~~Dp~~lG~~------~~~~~d~~~kvv~k~~p~e~vGvl~~~~~--~-g~~~vvEYsel~~~~~~~~~~~~g~l 346 (380)
-... ....|.-.. ++++.-+++=+++. .|...+|=|-.-.+ + +-+.|-++-|.|+....+.--+.|+.
T Consensus 116 H~I~--d~~af~~av~~A~~~A~~g~lVTfGI~Pt-~PeTGYGYIe~G~~~~~~~~~~V~~FvEKPd~etA~~yv~sG~y 192 (333)
T COG0836 116 HVIA--DEEAFLNAVKKAEKAAEEGGIVTFGIPPT-RPETGYGYIETGESIAENGVYKVDRFVEKPDLETAKKYVESGEY 192 (333)
T ss_pred ceec--cHHHHHHHHHHHHHHHHcCCEEEEecCCC-CCccCcceeecCcccccCCceEeeeeeeCCCHHHHHHHHHcCce
Confidence 8753 223444322 23455555656664 57888898866211 1 46788899999996433222346765
Q ss_pred eeccccccchhccHHHHHHHHhccc
Q 016922 347 RFCWSNVCLHMFTLDFLNQVANGLE 371 (380)
Q Consensus 347 ~f~~gNi~~~~f~l~fL~~~~~~~~ 371 (380)
.. |-++++|+.+.+-+-++.+.
T Consensus 193 ~W---NSGmF~Fra~~~l~e~~~~~ 214 (333)
T COG0836 193 LW---NSGMFLFRASVFLEELKKHQ 214 (333)
T ss_pred Ee---eccceEEEHHHHHHHHHhhC
Confidence 44 55566798865554444443
No 85
>PRK14489 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional
Probab=97.59 E-value=0.00082 Score=67.89 Aligned_cols=39 Identities=26% Similarity=0.505 Sum_probs=35.2
Q ss_pred CEEEEEecCCCccccCCCCCCccccccCCCCCccHHHHHHHHH
Q 016922 119 KLAVLLLSGGQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERIL 161 (380)
Q Consensus 119 kvavvlLAGG~GTRLg~~~PKg~~~i~l~s~ksllq~~~e~i~ 161 (380)
++++|+||||+||||| ..||.++++ .|+|++++.++++.
T Consensus 5 ~i~~VILAgG~s~Rmg-g~~K~ll~i---~Gkpll~~~i~~l~ 43 (366)
T PRK14489 5 QIAGVILAGGLSRRMN-GRDKALILL---GGKPLIERVVDRLR 43 (366)
T ss_pred CceEEEEcCCcccCCC-CCCCceeEE---CCeeHHHHHHHHHH
Confidence 6899999999999996 379999998 79999999999775
No 86
>TIGR02665 molyb_mobA molybdopterin-guanine dinucleotide biosynthesis protein A, proteobacterial. In many molybdopterin-containing enzymes, including nitrate reductase and dimethylsulfoxide reductase, the cofactor is molybdopterin-guanine dinucleotide. The family described here contains MobA, molybdopterin-guanine dinucleotide biosynthesis protein A, from the Proteobacteria only. MobA can reconstitute molybdopterin-guanine dinucleotide biosynthesis without the product of the neighboring gene MobB. The probable MobA proteins of other lineages differ sufficiently that they are not included in scope of this family.
Probab=97.55 E-value=0.001 Score=59.71 Aligned_cols=38 Identities=32% Similarity=0.634 Sum_probs=33.5
Q ss_pred EEEEEecCCCccccCCCCCCccccccCCCCCccHHHHHHHHH
Q 016922 120 LAVLLLSGGQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERIL 161 (380)
Q Consensus 120 vavvlLAGG~GTRLg~~~PKg~~~i~l~s~ksllq~~~e~i~ 161 (380)
+++|+||||.|||||. .||.+.++ .|+|++++.++++.
T Consensus 1 ~~~iILAgG~s~Rmg~-~~K~l~~i---~g~pll~~~l~~l~ 38 (186)
T TIGR02665 1 ISGVILAGGRARRMGG-RDKGLVEL---GGKPLIEHVLARLR 38 (186)
T ss_pred CeEEEEcCCccccCCC-CCCceeEE---CCEEHHHHHHHHHH
Confidence 4689999999999984 39999998 89999999999875
No 87
>TIGR03202 pucB xanthine dehydrogenase accessory protein pucB. In Bacillus subtilis the expression of this protein, located in an operon with the structural subunits of xanthine dehydrogenase, has been found to be essential for XDH activity. Some members of this family appear to have a distant relationship to the MobA protein involved in molybdopterin biosynthesis, although this may be coincidental.
Probab=97.54 E-value=0.00086 Score=60.77 Aligned_cols=36 Identities=22% Similarity=0.341 Sum_probs=31.7
Q ss_pred EEEEecCCCccccCCCCCCccccccCCCCCccHHHHHHHHH
Q 016922 121 AVLLLSGGQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERIL 161 (380)
Q Consensus 121 avvlLAGG~GTRLg~~~PKg~~~i~l~s~ksllq~~~e~i~ 161 (380)
++||||||.|+|||. +|.++++ .|+|++++.++.++
T Consensus 2 ~~vILAgG~s~Rmg~--~K~ll~~---~g~~ll~~~i~~~~ 37 (190)
T TIGR03202 2 VAIYLAAGQSRRMGE--NKLALPL---GETTLGSASLKTAL 37 (190)
T ss_pred eEEEEcCCccccCCC--Cceecee---CCccHHHHHHHHHH
Confidence 579999999999985 7999988 89999999887765
No 88
>PLN02728 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
Probab=97.51 E-value=0.00019 Score=68.94 Aligned_cols=42 Identities=26% Similarity=0.483 Sum_probs=37.7
Q ss_pred CCEEEEEecCCCccccCCCCCCccccccCCCCCccHHHHHHHHHH
Q 016922 118 GKLAVLLLSGGQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILC 162 (380)
Q Consensus 118 gkvavvlLAGG~GTRLg~~~PKg~~~i~l~s~ksllq~~~e~i~~ 162 (380)
.++++||||||.|+|||.+.||.++++ .|++++++.++.+..
T Consensus 23 ~~i~aIILAAG~gsRmg~~~pKqll~l---~Gkpll~~tl~~~~~ 64 (252)
T PLN02728 23 KSVSVILLAGGVGKRMGANMPKQYLPL---LGQPIALYSLYTFAR 64 (252)
T ss_pred CceEEEEEcccccccCCCCCCcceeEE---CCeEHHHHHHHHHHh
Confidence 368999999999999998899999998 799999998887663
No 89
>PRK00155 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Reviewed
Probab=97.47 E-value=0.0018 Score=60.31 Aligned_cols=41 Identities=24% Similarity=0.572 Sum_probs=37.2
Q ss_pred CEEEEEecCCCccccCCCCCCccccccCCCCCccHHHHHHHHHH
Q 016922 119 KLAVLLLSGGQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILC 162 (380)
Q Consensus 119 kvavvlLAGG~GTRLg~~~PKg~~~i~l~s~ksllq~~~e~i~~ 162 (380)
++++|+||||.|+|+|...||.+.++ .|+|++++.++++.+
T Consensus 3 ~~~~iILAaG~s~R~g~~~~K~l~~~---~g~pli~~~l~~l~~ 43 (227)
T PRK00155 3 MVYAIIPAAGKGSRMGADRPKQYLPL---GGKPILEHTLEAFLA 43 (227)
T ss_pred ceEEEEEcCccccccCCCCCceeeEE---CCEEHHHHHHHHHHc
Confidence 58899999999999998889999998 799999999998763
No 90
>PRK00560 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional
Probab=97.19 E-value=0.00036 Score=64.16 Aligned_cols=40 Identities=28% Similarity=0.586 Sum_probs=35.4
Q ss_pred CCEEEEEecCCCccccCCCCCCccccccCCCC-CccHHHHHHHHHH
Q 016922 118 GKLAVLLLSGGQGTRLGSSDPKGCVNIGLPSG-KSLFQLQAERILC 162 (380)
Q Consensus 118 gkvavvlLAGG~GTRLg~~~PKg~~~i~l~s~-ksllq~~~e~i~~ 162 (380)
.++++||||||+++||| .+|.++++ .| +|++++.++++..
T Consensus 7 ~~i~~vILAgG~s~RmG--~~K~ll~~---~g~~~ll~~~i~~l~~ 47 (196)
T PRK00560 7 DNIPCVILAGGKSSRMG--ENKALLPF---GSYSSLLEYQYTRLLK 47 (196)
T ss_pred cCceEEEECCcccccCC--CCceEEEe---CCCCcHHHHHHHHHHH
Confidence 57999999999999997 48999988 78 9999999998763
No 91
>cd02518 GT2_SpsF SpsF is a glycosyltrnasferase implicated in the synthesis of the spore coat. Spore coat polysaccharide biosynthesis protein F (spsF) is a glycosyltransferase implicated in the synthesis of the spore coat in a variety of bacteria challenged by stress as starvation. The spsF gene is expressed in the late stage of coat development responsible for a terminal step in coat formation that involves the glycosylation of the coat. SpsF gene mutation resulted in spores that appeared normal. But, the spores tended to aggregate and had abnormal adsorption properties, indicating a surface alteration.
Probab=97.08 E-value=0.0078 Score=56.28 Aligned_cols=35 Identities=23% Similarity=0.251 Sum_probs=30.4
Q ss_pred EEEecCCCccccCCCCCCccccccCCCCCccHHHHHHHHHH
Q 016922 122 VLLLSGGQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILC 162 (380)
Q Consensus 122 vvlLAGG~GTRLg~~~PKg~~~i~l~s~ksllq~~~e~i~~ 162 (380)
+|+||||.++||+ +|.+.++ .|+|++++.++.+..
T Consensus 2 aiIlA~G~S~R~~---~K~ll~l---~Gkpli~~~i~~l~~ 36 (233)
T cd02518 2 AIIQARMGSTRLP---GKVLKPL---GGKPLLEHLLDRLKR 36 (233)
T ss_pred EEEeeCCCCCCCC---CCccccc---CCccHHHHHHHHHHh
Confidence 5899999999995 5999888 799999999987763
No 92
>COG2266 GTP:adenosylcobinamide-phosphate guanylyltransferase [Coenzyme metabolism]
Probab=97.03 E-value=0.0012 Score=59.77 Aligned_cols=61 Identities=28% Similarity=0.527 Sum_probs=46.9
Q ss_pred EEEEEecCCCccccCCCCCCccccccCCCCCccHHHHHHHHHHHHHHHHhhhcCCCCCCCCceeEEEEcCCCchHHHHHH
Q 016922 120 LAVLLLSGGQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRKY 199 (380)
Q Consensus 120 vavvlLAGG~GTRLg~~~PKg~~~i~l~s~ksllq~~~e~i~~l~~la~~~~~~~~~~~~~~ip~~IMTS~~t~e~t~~~ 199 (380)
+.+|+||||+|||||. .-|+++++ .||+++.+-++-+.. .+ =-.++.||.+| ..|++|
T Consensus 1 m~~iiMAGGrGtRmg~-~EKPlleV---~GkpLI~~v~~al~~---~~--------------d~i~v~isp~t-p~t~~~ 58 (177)
T COG2266 1 MMAIIMAGGRGTRMGR-PEKPLLEV---CGKPLIDRVLEALRK---IV--------------DEIIVAISPHT-PKTKEY 58 (177)
T ss_pred CceEEecCCcccccCC-CcCcchhh---CCccHHHHHHHHHHh---hc--------------CcEEEEeCCCC-HhHHHH
Confidence 3579999999999997 56888877 999999998876653 11 12467777665 688999
Q ss_pred Hhh
Q 016922 200 FEG 202 (380)
Q Consensus 200 f~~ 202 (380)
+++
T Consensus 59 ~~~ 61 (177)
T COG2266 59 LES 61 (177)
T ss_pred HHh
Confidence 987
No 93
>PRK02726 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional
Probab=96.94 E-value=0.00072 Score=62.28 Aligned_cols=38 Identities=32% Similarity=0.503 Sum_probs=34.4
Q ss_pred CEEEEEecCCCccccCCCCCCccccccCCCCCccHHHHHHHHH
Q 016922 119 KLAVLLLSGGQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERIL 161 (380)
Q Consensus 119 kvavvlLAGG~GTRLg~~~PKg~~~i~l~s~ksllq~~~e~i~ 161 (380)
++.+|+||||.|+|||. +|.++++ .|+|++++.++.+.
T Consensus 7 ~~~~vILAgG~s~Rmg~--~K~ll~~---~g~~ll~~~i~~l~ 44 (200)
T PRK02726 7 NLVALILAGGKSSRMGQ--DKALLPW---QGVPLLQRVARIAA 44 (200)
T ss_pred CceEEEEcCCCcccCCC--CceeeEE---CCEeHHHHHHHHHH
Confidence 68899999999999985 7999998 79999999998875
No 94
>PRK00317 mobA molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed
Probab=96.93 E-value=0.00083 Score=61.01 Aligned_cols=39 Identities=33% Similarity=0.599 Sum_probs=34.7
Q ss_pred CEEEEEecCCCccccCCCCCCccccccCCCCCccHHHHHHHHH
Q 016922 119 KLAVLLLSGGQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERIL 161 (380)
Q Consensus 119 kvavvlLAGG~GTRLg~~~PKg~~~i~l~s~ksllq~~~e~i~ 161 (380)
++.+|+||||.|+|||. .||.+.++ .|+|++++.++.+.
T Consensus 3 ~~~~vILA~G~s~Rm~~-~~K~ll~~---~g~~ll~~~i~~l~ 41 (193)
T PRK00317 3 PITGVILAGGRSRRMGG-VDKGLQEL---NGKPLIQHVIERLA 41 (193)
T ss_pred CceEEEEcCCCcccCCC-CCCceeEE---CCEEHHHHHHHHHh
Confidence 68999999999999962 69999998 89999999998765
No 95
>COG1210 GalU UDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]
Probab=96.90 E-value=0.02 Score=55.59 Aligned_cols=168 Identities=21% Similarity=0.252 Sum_probs=97.0
Q ss_pred EEEecCCCccccC---CCCCCccccccCCCCCccHHHHHHHHHHHHHHHHhhhcCCCCCCCCceeEEEEcCCCchHHHHH
Q 016922 122 VLLLSGGQGTRLG---SSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRK 198 (380)
Q Consensus 122 vvlLAGG~GTRLg---~~~PKg~~~i~l~s~ksllq~~~e~i~~l~~la~~~~~~~~~~~~~~ip~~IMTS~~t~e~t~~ 198 (380)
+|+.|.|+|||+= -..||=|+|| -.|+..|+.++-..+ .| |.-+++.++.+...+.+
T Consensus 7 AViPaAGlGTRfLPATKaiPKEMLPI---vdKP~IqYiVeEa~~---------------aG--Ie~i~iVTgr~K~~IeD 66 (291)
T COG1210 7 AVIPAAGLGTRFLPATKAIPKEMLPI---VDKPLIQYIVEEAVA---------------AG--IEEILIVTGRGKRAIED 66 (291)
T ss_pred EEEEccCcccccccccccCchhhccc---cCchhHHHHHHHHHH---------------cC--CCEEEEEecCCcchHHH
Confidence 6888999999984 5579999999 789999999986553 24 55566666666668888
Q ss_pred HHhhcCCCCCCCCceEEEEeCCeeeEecCCcc-cc---c---CC----CccccccCCCchhhHHHhhCChHHHHHHCCCe
Q 016922 199 YFEGHKYFGLESDQVTFFQQGTIPCVSKDGRF-IM---E---TP----YKVAKAPDGNGGVYSALKSSKLLEDMATRGIK 267 (380)
Q Consensus 199 ~f~~~~~FGl~~~~V~~f~Q~~~P~~~~~gki-~l---~---~~----~~i~~~P~GnGgi~~aL~~~g~l~~l~~~Gi~ 267 (380)
||... |-|.. .+...||. +| . .. +--...|.|-|....+.+ .|. |-+
T Consensus 67 hFD~s--~ELE~------------~L~~~~K~~~L~~v~~i~~~~~i~~vRQ~e~~GLGhAVl~A~------~~v--g~E 124 (291)
T COG1210 67 HFDTS--YELEN------------TLEKRGKRELLEEVRSIPPLVTISFVRQKEPLGLGHAVLCAK------PFV--GDE 124 (291)
T ss_pred hCcCc--HHHHH------------HHHHhCHHHHHHHHHhcccCceEEEEecCCCCcchhHHHhhh------hhc--CCC
Confidence 88531 11110 00011211 00 0 00 112357999998887553 332 445
Q ss_pred EEEEEcCCCcccccCCHHHHHH---HHHhCC-ceEEEEeecCCCCcccceEEEE--cCCCCeEEEEecccCh
Q 016922 268 YIDCYGVDNALVRVADPTFLGY---FIDKGV-SAGAKVVRKAYPQEKVGVFVRR--GKGGPLTVVEYSELDP 333 (380)
Q Consensus 268 yi~v~~vDN~L~~~~Dp~~lG~---~~~~~~-d~~~kvv~k~~p~e~vGvl~~~--~~~g~~~vvEYsel~~ 333 (380)
-+.|.-.|-++. ..-|.+-.. ..+.+. -++++-|++.. -.++|++..- ..+|-++|...-|-|+
T Consensus 125 pFaVlL~Ddl~~-~~~~~l~qmi~~ye~~g~svi~v~ev~~e~-v~kYGvi~~g~~~~~~~~~v~~~VEKP~ 194 (291)
T COG1210 125 PFAVLLPDDLVD-SEKPCLKQMIELYEETGGSVIGVEEVPPED-VSKYGVIDPGEPVEKGVYKVKGMVEKPK 194 (291)
T ss_pred ceEEEeCCeeec-CCchHHHHHHHHHHHhCCcEEEEEECCHHH-CcccceEecCccccCCeEEEEEEEECCC
Confidence 444444555432 223333322 233343 44666666655 4888999721 1134577877777775
No 96
>COG1211 IspD 4-diphosphocytidyl-2-methyl-D-erithritol synthase [Lipid metabolism]
Probab=96.82 E-value=0.0026 Score=60.35 Aligned_cols=66 Identities=24% Similarity=0.371 Sum_probs=51.7
Q ss_pred CCEEEEEecCCCccccCCCCCCccccccCCCCCccHHHHHHHHHHHHHHHHhhhcCCCCCCCCceeEEEEcCCCchHHHH
Q 016922 118 GKLAVLLLSGGQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATR 197 (380)
Q Consensus 118 gkvavvlLAGG~GTRLg~~~PKg~~~i~l~s~ksllq~~~e~i~~l~~la~~~~~~~~~~~~~~ip~~IMTS~~t~e~t~ 197 (380)
.++.+|++|+|.|||+|.+.||-.+++ .|+++|++-++.+++. ..-=..+|.++..-+....
T Consensus 3 ~~~~~vilAaG~G~R~~~~~pKq~l~l---~g~pll~~tl~~f~~~---------------~~i~~Ivvv~~~~~~~~~~ 64 (230)
T COG1211 3 MMVSAVILAAGFGSRMGNPVPKQYLEL---GGRPLLEHTLEAFLES---------------PAIDEIVVVVSPEDDPYFE 64 (230)
T ss_pred ceEEEEEEcCccccccCCCCCceEEEE---CCEEehHHHHHHHHhC---------------cCCCeEEEEEChhhhHHHH
Confidence 478999999999999999999999988 9999999988877641 1111345666666777777
Q ss_pred HHHh
Q 016922 198 KYFE 201 (380)
Q Consensus 198 ~~f~ 201 (380)
++.+
T Consensus 65 ~~~~ 68 (230)
T COG1211 65 KLPK 68 (230)
T ss_pred Hhhh
Confidence 7775
No 97
>PRK14500 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MoaC/MobA; Provisional
Probab=96.75 E-value=0.0014 Score=65.80 Aligned_cols=40 Identities=28% Similarity=0.390 Sum_probs=35.1
Q ss_pred CCEEEEEecCCCccccCCCCCCccccccCCCCCccHHHHHHHHHH
Q 016922 118 GKLAVLLLSGGQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILC 162 (380)
Q Consensus 118 gkvavvlLAGG~GTRLg~~~PKg~~~i~l~s~ksllq~~~e~i~~ 162 (380)
+.+.+|+||||+|+||| .+|.++++ .|+|++++.++++..
T Consensus 159 ~~i~~IILAGGkSsRMG--~dKaLL~~---~GkpLl~~~ie~l~~ 198 (346)
T PRK14500 159 TPLYGLVLTGGKSRRMG--KDKALLNY---QGQPHAQYLYDLLAK 198 (346)
T ss_pred CCceEEEEeccccccCC--CCccccee---CCccHHHHHHHHHHh
Confidence 46889999999999998 59999988 799999998887653
No 98
>PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional
Probab=96.66 E-value=0.0029 Score=63.98 Aligned_cols=39 Identities=26% Similarity=0.369 Sum_probs=34.8
Q ss_pred CCEEEEEecCCCccccCCCCCCccccccCCCCCccHHHHHHHHH
Q 016922 118 GKLAVLLLSGGQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERIL 161 (380)
Q Consensus 118 gkvavvlLAGG~GTRLg~~~PKg~~~i~l~s~ksllq~~~e~i~ 161 (380)
-++++||||||+|+|||. +|.++++ .|+|++++.++++.
T Consensus 173 ~~i~~iILAGG~SsRmG~--~K~ll~~---~Gk~ll~~~l~~l~ 211 (369)
T PRK14490 173 VPLSGLVLAGGRSSRMGS--DKALLSY---HESNQLVHTAALLR 211 (369)
T ss_pred CCceEEEEcCCccccCCC--CcEEEEE---CCccHHHHHHHHHH
Confidence 467899999999999984 8999998 79999999988775
No 99
>COG4750 LicC CTP:phosphocholine cytidylyltransferase involved in choline phosphorylation for cell surface LPS epitopes [Cell envelope biogenesis, outer membrane]
Probab=96.43 E-value=0.0053 Score=56.54 Aligned_cols=61 Identities=21% Similarity=0.429 Sum_probs=50.5
Q ss_pred EEEEecCCCccccC---CCCCCccccccCCCCCccHHHHHHHHHHHHHHHHhhhcCCCCCCCCceeEEEEcCCCchHHHH
Q 016922 121 AVLLLSGGQGTRLG---SSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATR 197 (380)
Q Consensus 121 avvlLAGG~GTRLg---~~~PKg~~~i~l~s~ksllq~~~e~i~~l~~la~~~~~~~~~~~~~~ip~~IMTS~~t~e~t~ 197 (380)
-+++||-|.|||+. .+.||+++.| .|+++++.++++|+. .+ |--++...++.+|...
T Consensus 2 nAIIlAAG~gsR~~plT~~tpK~LlkV---~g~plIErqI~~L~e---------------~g--I~dI~IVvGYlkE~Fe 61 (231)
T COG4750 2 NAIILAAGLGSRFVPLTQSTPKSLLKV---NGEPLIERQIEQLRE---------------AG--IDDITIVVGYLKEQFE 61 (231)
T ss_pred ceEEEecccccccccccccCChHHHHh---cCcccHHHHHHHHHH---------------CC--CceEEEEeeehHHHHH
Confidence 36899999999986 7889999998 999999999999873 23 7778888899988764
Q ss_pred HHHhh
Q 016922 198 KYFEG 202 (380)
Q Consensus 198 ~~f~~ 202 (380)
||++
T Consensus 62 -YLkd 65 (231)
T COG4750 62 -YLKD 65 (231)
T ss_pred -HHHH
Confidence 5554
No 100
>TIGR03584 PseF pseudaminic acid CMP-transferase. The sequences in this family include the pfam02348 (cytidyltransferase) domain and are homologous to the NeuA protein responsible for the transfer of CMP to neuraminic acid. According to, this gene is responsible for the transfer of CMP to the structurally related sugar, pseudaminic acid which is observed as a component of sugar modifications of flagellin in Campylobacter species. This gene is commonly observed in apparent operons with other genes responsible for the biosynthesis of pseudaminic acid and as a component of flagellar and exopolysaccharide biosynthesis loci.
Probab=95.49 E-value=0.32 Score=45.62 Aligned_cols=132 Identities=14% Similarity=0.211 Sum_probs=76.2
Q ss_pred EEEecCCCccccCCCCCCccccccCCCCCccHHHHHHHHHHHHHHHHhhhcCCCCCCCCceeEEEEcCCCchHHHHHHHh
Q 016922 122 VLLLSGGQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRKYFE 201 (380)
Q Consensus 122 vvlLAGG~GTRLg~~~PKg~~~i~l~s~ksllq~~~e~i~~l~~la~~~~~~~~~~~~~~ip~~IMTS~~t~e~t~~~f~ 201 (380)
+|++|.|.++|++ .|-+.++ .||+++++.++.+++. + .+-.+|.+++ ++.+.++.+
T Consensus 2 aiIpArG~Skr~~---~Knl~~l---~GkpLi~~ti~~a~~s---------------~-~~d~IvVstd--~~~i~~~a~ 57 (222)
T TIGR03584 2 AIIPARGGSKRIP---RKNIKPF---CGKPMIAYSIEAALNS---------------G-LFDKVVVSTD--DEEIAEVAK 57 (222)
T ss_pred EEEccCCCCCCCC---Cccchhc---CCcCHHHHHHHHHHhC---------------C-CCCEEEEeCC--CHHHHHHHH
Confidence 5788999999995 4877777 7999999999977641 1 1233444444 367777776
Q ss_pred hcCCCCCCCCceEEEEeCCeeeEecCCcccccCCCccccccCCCchhhHHHhhCChHHHHHH-CCCeEEEEEcCCCcccc
Q 016922 202 GHKYFGLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMAT-RGIKYIDCYGVDNALVR 280 (380)
Q Consensus 202 ~~~~FGl~~~~V~~f~Q~~~P~~~~~gki~l~~~~~i~~~P~GnGgi~~aL~~~g~l~~l~~-~Gi~yi~v~~vDN~L~~ 280 (380)
+ +|.. |.+. .|.++...-.|..+++... ++.+.+ ...+++.+.+.|.+|..
T Consensus 58 ~---~g~~---v~~~-----------------r~~~l~~d~~~~~~si~~~-----l~~l~~~~~~d~v~~l~~tsPl~~ 109 (222)
T TIGR03584 58 S---YGAS---VPFL-----------------RPKELADDFTGTAPVVKHA-----IEELKLQKQYDHACCIYATAPFLQ 109 (222)
T ss_pred H---cCCE---eEEe-----------------ChHHHcCCCCCchHHHHHH-----HHHHhhcCCCCEEEEecCCCCcCC
Confidence 5 3431 1110 1111222222333333322 344432 34688999999999843
Q ss_pred cCCHH-HHHHHHHhCCceEEEEeecC
Q 016922 281 VADPT-FLGYFIDKGVSAGAKVVRKA 305 (380)
Q Consensus 281 ~~Dp~-~lG~~~~~~~d~~~kvv~k~ 305 (380)
..|-. ++....+.++|..+.|++..
T Consensus 110 ~~~I~~~i~~~~~~~~ds~~sv~~~~ 135 (222)
T TIGR03584 110 AKILKEAFELLKQPNAHFVFSVTSFA 135 (222)
T ss_pred HHHHHHHHHHHHhCCCCEEEEeeccC
Confidence 22221 22333346689988888753
No 101
>COG2068 Uncharacterized MobA-related protein [General function prediction only]
Probab=92.16 E-value=0.2 Score=46.61 Aligned_cols=119 Identities=24% Similarity=0.262 Sum_probs=74.0
Q ss_pred CCCEEEEEecCCCccccCCCCCCccccccCCCCCccHHHHHHHHHHHHHHHHhhhcCCCCCCCCceeEEEEcCCCchHHH
Q 016922 117 DGKLAVLLLSGGQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDAT 196 (380)
Q Consensus 117 ~gkvavvlLAGG~GTRLg~~~PKg~~~i~l~s~ksllq~~~e~i~~l~~la~~~~~~~~~~~~~~ip~~IMTS~~t~e~t 196 (380)
..++++|+||-|.||||| .+|-++|+ .|++++...+++.+. .+. =..++.|+....+.-
T Consensus 3 ~~~v~~VvLAAGrssRmG--~~KlLap~---~g~plv~~~~~~a~~---------------a~~-~~vivV~g~~~~~~~ 61 (199)
T COG2068 3 PSTVAAVVLAAGRSSRMG--QPKLLAPL---DGKPLVRASAETALS---------------AGL-DRVIVVTGHRVAEAV 61 (199)
T ss_pred CcceEEEEEcccccccCC--Ccceeccc---CCCcHHHHHHHHHHh---------------cCC-CeEEEEeCcchhhHH
Confidence 358999999999999999 78999999 999999999987663 111 124555555544444
Q ss_pred HHHHhhcCCCCCCCCceEEEEeCCeeeEecCCcccccCCCccccccCCCchhhHHHhhCChHHHHHHCCCeEEEEEcCCC
Q 016922 197 RKYFEGHKYFGLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGVDN 276 (380)
Q Consensus 197 ~~~f~~~~~FGl~~~~V~~f~Q~~~P~~~~~gki~l~~~~~i~~~P~GnGgi~~aL~~~g~l~~l~~~Gi~yi~v~~vDN 276 (380)
...... + . ..+...|+=.=|.-.+|+.- +......+ ..++++-.|=
T Consensus 62 ~a~~~~-----~---~-----------------------~~~v~npd~~~Gls~Sl~ag--~~a~~~~~-~~v~~~lgDm 107 (199)
T COG2068 62 EALLAQ-----L---G-----------------------VTVVVNPDYAQGLSTSLKAG--LRAADAEG-DGVVLMLGDM 107 (199)
T ss_pred Hhhhcc-----C---C-----------------------eEEEeCcchhhhHhHHHHHH--HHhcccCC-CeEEEEeCCC
Confidence 444432 1 1 11223343333444444321 23333333 5889999999
Q ss_pred cccccCCHHHHHHH
Q 016922 277 ALVRVADPTFLGYF 290 (380)
Q Consensus 277 ~L~~~~Dp~~lG~~ 290 (380)
+++...+..-+...
T Consensus 108 P~V~~~t~~rl~~~ 121 (199)
T COG2068 108 PQVTPATVRRLIAA 121 (199)
T ss_pred CCCCHHHHHHHHHh
Confidence 98777777655544
No 102
>PF14134 DUF4301: Domain of unknown function (DUF4301)
Probab=90.74 E-value=2.4 Score=44.43 Aligned_cols=65 Identities=18% Similarity=0.259 Sum_probs=50.5
Q ss_pred CCCCCCCceEEEEeCC---eeeEecCCcccccCCCccccccCCCchhhHHHhhCChHHHHHHCCCeEEEEEcCCCccc
Q 016922 205 YFGLESDQVTFFQQGT---IPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGVDNALV 279 (380)
Q Consensus 205 ~FGl~~~~V~~f~Q~~---~P~~~~~gki~l~~~~~i~~~P~GnGgi~~aL~~~g~l~~l~~~Gi~yi~v~~vDN~L~ 279 (380)
.||..- +|.|-.|.. -.++|.++..+..+.+++.--|.|||.+..-| .+..-+-|+|=|+||+..
T Consensus 229 ~~~v~f-~IsfS~Qk~sTDTIAv~~dN~pFR~~dG~LlFRPgGHGALieNL---------N~ldaDiIFIKNIDNVvp 296 (513)
T PF14134_consen 229 KYGVKF-EISFSEQKPSTDTIAVDPDNTPFRNEDGSLLFRPGGHGALIENL---------NDLDADIIFIKNIDNVVP 296 (513)
T ss_pred hhCceE-EEEecccCCCCCeeEECCCCCccCCCCCCEEeCCCcchHHHhhh---------ccccCCEEEEeCccccCC
Confidence 466653 577777765 34788899988888899999999999877654 344557899999999963
No 103
>COG1212 KdsB CMP-2-keto-3-deoxyoctulosonic acid synthetase [Cell envelope biogenesis, outer membrane]
Probab=83.38 E-value=4.2 Score=38.71 Aligned_cols=91 Identities=30% Similarity=0.344 Sum_probs=63.4
Q ss_pred CEEEEEecCCCccccCCCCCCccccccCCCCCccHHHHHHHHHHH-----------HHHHHhhhcCCCCCCCCceeEEEE
Q 016922 119 KLAVLLLSGGQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILCV-----------QRLAAQVTSEGGGSGSAAIHWYIM 187 (380)
Q Consensus 119 kvavvlLAGG~GTRLg~~~PKg~~~i~l~s~ksllq~~~e~i~~l-----------~~la~~~~~~~~~~~~~~ip~~IM 187 (380)
+..++|-|-=..|||-- |.+.+| .|||++++-++|...- ++.+..... .|. -++|
T Consensus 3 ~~~viIPAR~~STRLpg---KPLadI---~GkpmI~rV~e~a~~s~~~rvvVATDde~I~~av~~-----~G~---~avm 68 (247)
T COG1212 3 KFVVIIPARLASTRLPG---KPLADI---GGKPMIVRVAERALKSGADRVVVATDDERIAEAVQA-----FGG---EAVM 68 (247)
T ss_pred ceEEEEecchhcccCCC---Cchhhh---CCchHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH-----hCC---EEEe
Confidence 57889999888888832 667777 8999999999987632 111111111 232 3799
Q ss_pred cCCCc---hHHHHHHHhhcCCCCCCCCceEEEEeCCeeeEec
Q 016922 188 TSPFT---DDATRKYFEGHKYFGLESDQVTFFQQGTIPCVSK 226 (380)
Q Consensus 188 TS~~t---~e~t~~~f~~~~~FGl~~~~V~~f~Q~~~P~~~~ 226 (380)
||.+- .+.+.+-+++ .+++.+.+.+-.|+..|++..
T Consensus 69 T~~~h~SGTdR~~Ev~~~---l~~~~~~iIVNvQGDeP~i~p 107 (247)
T COG1212 69 TSKDHQSGTDRLAEVVEK---LGLPDDEIIVNVQGDEPFIEP 107 (247)
T ss_pred cCCCCCCccHHHHHHHHh---cCCCcceEEEEccCCCCCCCH
Confidence 99965 4455555655 566678899999999999964
No 104
>KOG1462 consensus Translation initiation factor 2B, gamma subunit (eIF-2Bgamma/GCD1) [Translation, ribosomal structure and biogenesis]
Probab=78.44 E-value=2.1 Score=43.67 Aligned_cols=72 Identities=17% Similarity=0.242 Sum_probs=51.6
Q ss_pred CEEEEEecCCCccccC---CCCCCccccccCCCCCccHHHHHHHHHHHHHHHHhhhcCCCCCCCCceeEEEEcCCCchHH
Q 016922 119 KLAVLLLSGGQGTRLG---SSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDA 195 (380)
Q Consensus 119 kvavvlLAGG~GTRLg---~~~PKg~~~i~l~s~ksllq~~~e~i~~l~~la~~~~~~~~~~~~~~ip~~IMTS~~t~e~ 195 (380)
+..+|++|||-|||+- ...||.++|| .+++++.+-+.-+.+ .+- --.++.+-..-.++
T Consensus 9 efqavV~a~~ggt~~p~~~~~~pKaLLPI---gn~PMi~YpL~~L~~---------------~gf-teiiVv~~e~e~~~ 69 (433)
T KOG1462|consen 9 EFQAVVLAGGGGTRMPEVTSRLPKALLPI---GNKPMILYPLNSLEQ---------------AGF-TEIIVVVNEDEKLD 69 (433)
T ss_pred HhhhheeecCCceechhhhhhcchhhccc---CCcceeeeehhHHHh---------------cCC-eEEEEEecHHHHHH
Confidence 4567899999999985 6779999999 788999887776543 121 12455555667788
Q ss_pred HHHHHhhcCCCCCCCC
Q 016922 196 TRKYFEGHKYFGLESD 211 (380)
Q Consensus 196 t~~~f~~~~~FGl~~~ 211 (380)
+++.+.+ ++-++..
T Consensus 70 i~~al~~--~~~l~~~ 83 (433)
T KOG1462|consen 70 IESALGS--NIDLKKR 83 (433)
T ss_pred HHHHHhc--CCccccc
Confidence 9999986 3455443
No 105
>PF02348 CTP_transf_3: Cytidylyltransferase; InterPro: IPR003329 Synonym(s): CMP-N-acetylneuraminic acid synthetase Acylneuraminate cytidylyltransferase (2.7.7.43 from EC) (CMP-NeuAc synthetase) catalyzes the reaction of CTP and NeuAc to form CMP-NeuAc, which is the nucleotide sugar donor used by sialyltransferases []. The outer membrane lipooligosaccharides of some microorganisms contain terminal sialic acid attached to N-acetyllactosamine and so this modification may be important in pathogenesis.; GO: 0009103 lipopolysaccharide biosynthetic process; PDB: 3K8D_C 1VH1_B 3K8E_C 1QWJ_A 3EWI_A 1VIC_B 3DUV_A 1VH3_C 3TQD_A 2Y6P_C ....
Probab=72.27 E-value=11 Score=34.29 Aligned_cols=89 Identities=22% Similarity=0.284 Sum_probs=50.2
Q ss_pred EEEEecCCCccccCCCCCCccccccCCCCCccHHHHHHHHHHHHHH---------------HHhhhcCCCCCCCCceeEE
Q 016922 121 AVLLLSGGQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILCVQRL---------------AAQVTSEGGGSGSAAIHWY 185 (380)
Q Consensus 121 avvlLAGG~GTRLg~~~PKg~~~i~l~s~ksllq~~~e~i~~l~~l---------------a~~~~~~~~~~~~~~ip~~ 185 (380)
++||-|-|-.+||-- |-+.++ .|||++++.++++++.+.. +.+ ++. -+
T Consensus 1 iaiIpAR~gS~rlp~---Knl~~l---~gkpLi~~~i~~a~~s~~~d~IvVaTd~~~i~~~~~~--------~g~---~v 63 (217)
T PF02348_consen 1 IAIIPARGGSKRLPG---KNLKPL---GGKPLIEYVIERAKQSKLIDEIVVATDDEEIDDIAEE--------YGA---KV 63 (217)
T ss_dssp EEEEEE-SSSSSSTT---GGGSEE---TTEEHHHHHHHHHHHTTTTSEEEEEESSHHHHHHHHH--------TTS---EE
T ss_pred CEEEecCCCCCCCCc---chhhHh---CCccHHHHHHHHHHhCCCCCeEEEeCCCHHHHHHHHH--------cCC---ee
Confidence 357777666666632 445555 8999999999998763221 111 232 24
Q ss_pred EEcCCCchHHHHHHHhhcCCCCCCCCceEEEEeCCeeeEec
Q 016922 186 IMTSPFTDDATRKYFEGHKYFGLESDQVTFFQQGTIPCVSK 226 (380)
Q Consensus 186 IMTS~~t~e~t~~~f~~~~~FGl~~~~V~~f~Q~~~P~~~~ 226 (380)
+|+++.-...+..+.+--.++..+.+.+.+..|+..|.++.
T Consensus 64 ~~~~~~~~~~~~r~~~~~~~~~~~~~~~vv~~~~d~Pll~~ 104 (217)
T PF02348_consen 64 IFRRGSLADDTDRFIEAIKHFLADDEDIVVRLQGDSPLLDP 104 (217)
T ss_dssp EE--TTSSSHHHHHHHHHHHHTCSTTSEEEEESTTETT--H
T ss_pred EEcChhhcCCcccHHHHHHHhhhhHHhhccccCCeeeECCH
Confidence 66666655555555444334444434477777888887764
No 106
>PF14969 DUF4508: Domain of unknown function (DUF4508)
Probab=69.57 E-value=4.8 Score=33.26 Aligned_cols=37 Identities=24% Similarity=0.469 Sum_probs=30.5
Q ss_pred Cchhcccc-ccCCHHHHHHHHHHHhcCChHHHHHHHHH
Q 016922 37 QEDAFALW-DELSPDERDHLVKDIESLDLPRVDRIIRC 73 (380)
Q Consensus 37 Q~Hll~~~-~~l~~~ek~~L~~ql~~id~~~~~~~~~~ 73 (380)
|-+||+-| +.=+++||+.|+++|+.+|.....++|+.
T Consensus 59 qlkLf~qWf~~W~~~ern~fl~~Lee~D~~f~~k~~~~ 96 (98)
T PF14969_consen 59 QLKLFRQWFPKWSEEERNKFLEQLEEIDPDFVAKFYQE 96 (98)
T ss_pred hHHHHHHHHhhccHHHHHHHHHHHHHhChHHHHHHHHh
Confidence 56778444 45779999999999999999999888874
No 107
>COG1861 SpsF Spore coat polysaccharide biosynthesis protein F, CMP-KDO synthetase homolog [Cell envelope biogenesis, outer membrane]
Probab=62.80 E-value=23 Score=33.69 Aligned_cols=118 Identities=21% Similarity=0.297 Sum_probs=75.4
Q ss_pred CCEEEEEecCCCccccCCCCCCccccccCCCCCccHHHHHHHHHHHHHHHHhhhcCCCCCCCCceeEEEEcCCC-chHHH
Q 016922 118 GKLAVLLLSGGQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPF-TDDAT 196 (380)
Q Consensus 118 gkvavvlLAGG~GTRLg~~~PKg~~~i~l~s~ksllq~~~e~i~~l~~la~~~~~~~~~~~~~~ip~~IMTS~~-t~e~t 196 (380)
+++++|+=|-=-.|||-. |.+.|+ -++|+++++++|+++...+ =.++|-||.. +++.+
T Consensus 2 ~~I~~IiQARmgStRLpg---KvLlpL---~~~pmI~~~lervrks~~~---------------d~ivvATS~~~~d~~l 60 (241)
T COG1861 2 SMILVIIQARMGSTRLPG---KVLLPL---GGEPMIEYQLERVRKSKDL---------------DKIVVATSDKEEDDAL 60 (241)
T ss_pred CcEEEEeeecccCccCCc---chhhhc---CCCchHHHHHHHHhccccc---------------cceEEEecCCcchhHH
Confidence 467788877544555522 667777 7889999999998852221 2468999985 57788
Q ss_pred HHHHhhcCCCCCCCCceEEEEeCCeeeEecCCcccccCCCccccccCCCc-hhhHHHhhCChHHHHHHCCCeEEEEEcCC
Q 016922 197 RKYFEGHKYFGLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNG-GVYSALKSSKLLEDMATRGIKYIDCYGVD 275 (380)
Q Consensus 197 ~~~f~~~~~FGl~~~~V~~f~Q~~~P~~~~~gki~l~~~~~i~~~P~GnG-gi~~aL~~~g~l~~l~~~Gi~yi~v~~vD 275 (380)
.++..++.+ .+|. |.+ ++..-+ .....+.+-..|.=.-.|
T Consensus 61 ~~~~~~~G~--------~vfr--------------------------Gs~~dVL~Rf-----~~a~~a~~~~~VVRvTGD 101 (241)
T COG1861 61 EEVCRSHGF--------YVFR--------------------------GSEEDVLQRF-----IIAIKAYSADVVVRVTGD 101 (241)
T ss_pred HHHHHHcCe--------eEec--------------------------CCHHHHHHHH-----HHHHHhcCCCeEEEeeCC
Confidence 888887543 2331 111 222211 233444555566666889
Q ss_pred CcccccCCHHHHHH----HHHhCCceE
Q 016922 276 NALVRVADPTFLGY----FIDKGVSAG 298 (380)
Q Consensus 276 N~L~~~~Dp~~lG~----~~~~~~d~~ 298 (380)
|++ .||.++-. |.++|+|+.
T Consensus 102 ~P~---~dp~l~d~~v~~~l~~gaDY~ 125 (241)
T COG1861 102 NPF---LDPELVDAAVDRHLEKGADYV 125 (241)
T ss_pred CCC---CCHHHHHHHHHHHHhcCCccc
Confidence 997 78887654 456788874
No 108
>PRK10834 vancomycin high temperature exclusion protein; Provisional
Probab=44.55 E-value=11 Score=36.10 Aligned_cols=85 Identities=18% Similarity=0.304 Sum_probs=54.2
Q ss_pred HHhhhhhcCCCEEEEEecCCCccccCCCCCCccccc----cCCCCCccHHHHH----HHHHHHHHHHHhhhcCCCCCCCC
Q 016922 109 KMGLKAISDGKLAVLLLSGGQGTRLGSSDPKGCVNI----GLPSGKSLFQLQA----ERILCVQRLAAQVTSEGGGSGSA 180 (380)
Q Consensus 109 ~~G~~~i~~gkvavvlLAGG~GTRLg~~~PKg~~~i----~l~s~ksllq~~~----e~i~~l~~la~~~~~~~~~~~~~ 180 (380)
..++++.++|++..+++.||.++. +++.|..|... |+|...=+++... +.+.+..++. +.
T Consensus 71 ~~A~~LYk~gk~~~ilvSGg~~~~-~~~Ea~~M~~yLi~~GVp~e~Ii~e~~s~nT~en~~~a~~i~-----------~~ 138 (239)
T PRK10834 71 QGAINAYNSGKVNYLLLSGDNALQ-SYNEPMTMRKDLIAAGVDPSDIVLDYAGFRTLDSIVRTRKVF-----------DT 138 (239)
T ss_pred HHHHHHHHhCCCCEEEEeCCCCCC-CCCHHHHHHHHHHHcCCCHHHEEecCCCCCHHHHHHHHHHHh-----------CC
Confidence 468999999999999999998754 67777766542 5554332332221 1122111111 11
Q ss_pred ceeEEEEcCCCchHHHHHHHhhcCCCCCC
Q 016922 181 AIHWYIMTSPFTDDATRKYFEGHKYFGLE 209 (380)
Q Consensus 181 ~ip~~IMTS~~t~e~t~~~f~~~~~FGl~ 209 (380)
-+++|.||.+--..-.-.|++ +|++
T Consensus 139 -~~~iIVTq~fHm~RA~~ia~~---~Gi~ 163 (239)
T PRK10834 139 -NDFIIITQRFHCERALFIALH---MGIQ 163 (239)
T ss_pred -CCEEEECCHHHHHHHHHHHHH---cCCc
Confidence 257899999888888888875 6774
No 109
>TIGR03092 SASP_sspI small, acid-soluble spore protein I. This protein family is restricted to a subset of endospore-forming bacteria such as Bacillus subtilis, all of which are in the Firmicutes (low-GC Gram-positive) lineage. It is a minor SASP (small, acid-soluble spore protein) designated SspI. The gene in Bacillus subtilis previously was designated ysfA.
Probab=41.48 E-value=27 Score=26.69 Aligned_cols=40 Identities=23% Similarity=0.538 Sum_probs=28.7
Q ss_pred CCCHHHHHHHHH---HCCCch-------hc-cccccCCHHHHHHHHHHHhc
Q 016922 22 SPPPQALLERLK---DYGQED-------AF-ALWDELSPDERDHLVKDIES 61 (380)
Q Consensus 22 ~~~~~~l~~~l~---~~gQ~H-------ll-~~~~~l~~~ek~~L~~ql~~ 61 (380)
..+.++|..... ..|+++ || .+|...+++||..+++.|.+
T Consensus 12 ~~s~~elk~~I~daI~sgEEk~LPGLGVlFE~~W~~~~~~ek~~m~~~l~~ 62 (65)
T TIGR03092 12 NNTKEQLEATIVDAIQSGEEKMLPGLGVLFEAIWKHANEQEKDEMLETLEQ 62 (65)
T ss_pred CCCHHHHHHHHHHHHhccchhcCCccHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 445566655555 346665 45 78999999999999998764
No 110
>CHL00195 ycf46 Ycf46; Provisional
Probab=40.86 E-value=3.5e+02 Score=28.69 Aligned_cols=51 Identities=14% Similarity=0.228 Sum_probs=33.3
Q ss_pred CCCHHHHHHHHHHCCCchhccccccCCHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 016922 22 SPPPQALLERLKDYGQEDAFALWDELSPDERDHLVKDIESLDLPRVDRIIRCSLR 76 (380)
Q Consensus 22 ~~~~~~l~~~l~~~gQ~Hll~~~~~l~~~ek~~L~~ql~~id~~~~~~~~~~~~~ 76 (380)
-++.+++.+.|...-+.. =..++++...+|++.++.+....+..++..++.
T Consensus 141 lP~~~ei~~~l~~~~~~~----~~~~~~~~~~~l~~~~~gls~~~~~~~~~~~~~ 191 (489)
T CHL00195 141 LPTESEIKKELTRLIKSL----NIKIDSELLENLTRACQGLSLERIRRVLSKIIA 191 (489)
T ss_pred CcCHHHHHHHHHHHHHhc----CCCCCHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 355566666654443221 114678888889999999988888887776544
No 111
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=39.03 E-value=25 Score=37.76 Aligned_cols=54 Identities=30% Similarity=0.500 Sum_probs=39.5
Q ss_pred ccccCCCCCCccccccCC-CCCccHHHHHHHHHHHHHHHHhhhcCCCCCCCCceeEEEEcCCCc--------hHHHHHHH
Q 016922 130 GTRLGSSDPKGCVNIGLP-SGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFT--------DDATRKYF 200 (380)
Q Consensus 130 GTRLg~~~PKg~~~i~l~-s~ksllq~~~e~i~~l~~la~~~~~~~~~~~~~~ip~~IMTS~~t--------~e~t~~~f 200 (380)
=||||...|||.+=+|.| +|||+|.- ..|+ ...+|+|-|.-..= ...+++.|
T Consensus 329 ftrLGGKLPKGVLLvGPPGTGKTlLAR---------AvAG----------EA~VPFF~~sGSEFdEm~VGvGArRVRdLF 389 (752)
T KOG0734|consen 329 FTRLGGKLPKGVLLVGPPGTGKTLLAR---------AVAG----------EAGVPFFYASGSEFDEMFVGVGARRVRDLF 389 (752)
T ss_pred hhhccCcCCCceEEeCCCCCchhHHHH---------Hhhc----------ccCCCeEeccccchhhhhhcccHHHHHHHH
Confidence 389999999999999988 69998843 2222 23489888876643 34578888
Q ss_pred hh
Q 016922 201 EG 202 (380)
Q Consensus 201 ~~ 202 (380)
..
T Consensus 390 ~a 391 (752)
T KOG0734|consen 390 AA 391 (752)
T ss_pred HH
Confidence 76
No 112
>PF14098 SSPI: Small, acid-soluble spore protein I
Probab=37.30 E-value=38 Score=25.94 Aligned_cols=40 Identities=23% Similarity=0.582 Sum_probs=29.0
Q ss_pred CCCHHHHHHHHHH---CCCch-------hc-cccccCCHHHHHHHHHHHhc
Q 016922 22 SPPPQALLERLKD---YGQED-------AF-ALWDELSPDERDHLVKDIES 61 (380)
Q Consensus 22 ~~~~~~l~~~l~~---~gQ~H-------ll-~~~~~l~~~ek~~L~~ql~~ 61 (380)
..+.+++...... .|+++ || ..|...++++|+++++.|.+
T Consensus 13 g~s~~el~~~I~daI~sgEE~~LPGLGVlFE~~W~~~~~~ek~~m~~~l~~ 63 (65)
T PF14098_consen 13 GSSKEELKDTIEDAIQSGEEKALPGLGVLFEVIWKNSDESEKQEMVNTLEQ 63 (65)
T ss_pred CCCHHHHHHHHHHHHhccchhcCCchHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence 4566666666653 35555 45 68999999999999988764
No 113
>PF13106 DUF3961: Domain of unknown function (DUF3961)
Probab=36.99 E-value=19 Score=24.84 Aligned_cols=14 Identities=50% Similarity=1.137 Sum_probs=11.6
Q ss_pred cCCCCCC---CCceEEE
Q 016922 203 HKYFGLE---SDQVTFF 216 (380)
Q Consensus 203 ~~~FGl~---~~~V~~f 216 (380)
|.|||++ .+||+||
T Consensus 4 n~~FGie~~~sdqIWFY 20 (40)
T PF13106_consen 4 NEWFGIEECKSDQIWFY 20 (40)
T ss_pred hhhcCccccccccEEEe
Confidence 5799998 5789988
No 114
>COG1535 EntB Isochorismate hydrolase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=36.08 E-value=3.6e+02 Score=25.10 Aligned_cols=94 Identities=21% Similarity=0.268 Sum_probs=58.0
Q ss_pred CCccHHHHHHHHHHHHHHHHhhhcCCCCCCCCceeEEEEcCCC-chHHHHHHHhhcCCCC--CCCCceEEEEeCCeeeEe
Q 016922 149 GKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPF-TDDATRKYFEGHKYFG--LESDQVTFFQQGTIPCVS 225 (380)
Q Consensus 149 ~ksllq~~~e~i~~l~~la~~~~~~~~~~~~~~ip~~IMTS~~-t~e~t~~~f~~~~~FG--l~~~~V~~f~Q~~~P~~~ 225 (380)
+-+..+-.++.|.+|..-+.+ .+ ||.+--.-.. ..++-+..+.+ ++| ++.. -.+|..+
T Consensus 49 ~~~~~~~li~Ni~~Lr~~~~~--------~g--iPVvyTaqp~~qs~~draLL~d--~WGpgl~~~---p~~~~vv---- 109 (218)
T COG1535 49 NCPLMEQLIANIAKLRIWCKQ--------AG--IPVVYTAQPGEQSPEDRALLKD--FWGPGLTAS---PEQQKVV---- 109 (218)
T ss_pred CCccHHHHHHHHHHHHHHHHH--------cC--CcEEEEecCCcCCHHHHHHHHH--hcCCCCCCC---hhhhhhH----
Confidence 344667788889988887765 23 7765544444 45666777764 666 3321 0111111
Q ss_pred cCCcccccCCCccccccCCCch------hhHHHhhCChHHHHHHCCCeEEEEEcC
Q 016922 226 KDGRFIMETPYKVAKAPDGNGG------VYSALKSSKLLEDMATRGIKYIDCYGV 274 (380)
Q Consensus 226 ~~gki~l~~~~~i~~~P~GnGg------i~~aL~~~g~l~~l~~~Gi~yi~v~~v 274 (380)
...-+|-+| -|+|++++.+++.|++.|+..+.+..|
T Consensus 110 -------------~~l~P~~~D~vL~kwrYsAF~~s~Llq~lr~~grdQLIItGV 151 (218)
T COG1535 110 -------------DELAPGADDTVLTKWRYSAFHRSPLLQMLREKGRDQLIITGV 151 (218)
T ss_pred -------------HhcCCCCCceEEeeeehhhhhcChHHHHHHHcCCCcEEEeeh
Confidence 111122222 289999999999999999998776544
No 115
>PRK02955 small acid-soluble spore protein SspI; Provisional
Probab=34.27 E-value=44 Score=25.80 Aligned_cols=40 Identities=23% Similarity=0.556 Sum_probs=28.6
Q ss_pred CCCHHHHHHHHHH---CCCch-------hc-cccccCCHHHHHHHHHHHhc
Q 016922 22 SPPPQALLERLKD---YGQED-------AF-ALWDELSPDERDHLVKDIES 61 (380)
Q Consensus 22 ~~~~~~l~~~l~~---~gQ~H-------ll-~~~~~l~~~ek~~L~~ql~~ 61 (380)
..+.+++...... .|+++ || .+|...+++||..+++.|.+
T Consensus 15 g~s~eel~~~I~daIqsgEEk~LPGLGVlFE~~W~~~~~~ek~~m~~~l~~ 65 (68)
T PRK02955 15 GNSKEELEGTIVDAIQSGEEKMLPGLGVLFEVIWKNADENEKDEMLETLEQ 65 (68)
T ss_pred CCCHHHHHHHHHHHHhccchhcCCcchhHHHHHHHhcCHHHHHHHHHHHHH
Confidence 4455666555553 45554 55 78999999999999998764
No 116
>PF09655 Nitr_red_assoc: Conserved nitrate reductase-associated protein (Nitr_red_assoc); InterPro: IPR013481 Proteins in this entry are found in the Cyanobacteria, and are mostly encoded near nitrate reductase and molybdopterin biosynthesis genes. Molybdopterin guanine dinucleotide is a cofactor for nitrate reductase. These proteins are sometimes annotated as nitrate reductase-associated proteins, though their function is unknown.
Probab=33.68 E-value=80 Score=27.97 Aligned_cols=28 Identities=32% Similarity=0.602 Sum_probs=20.0
Q ss_pred HHHHHCCCchhccccccCCHHHHHHHHH
Q 016922 30 ERLKDYGQEDAFALWDELSPDERDHLVK 57 (380)
Q Consensus 30 ~~l~~~gQ~Hll~~~~~l~~~ek~~L~~ 57 (380)
-+|-..|=-==|++|..|+.+||+.|++
T Consensus 21 ~KLD~cGiKLkL~~W~~l~~~eRq~Lv~ 48 (144)
T PF09655_consen 21 YKLDTCGIKLKLSHWQQLSQEERQQLVD 48 (144)
T ss_pred eccchhheeeeHHHHhcCCHHHHHHHHc
Confidence 3344444444478999999999998875
No 117
>TIGR02664 nitr_red_assoc conserved hypothetical protein. Most members of this protein family are found in the Cyanobacteria, and these mostly near nitrate reductase genes and molybdopterin biosynthesis genes. We note that molybdopterin guanine dinucleotide is a cofactor for nitrate reductase. This protein is sometimes annotated as nitrate reductase-associated protein. Its function is unknown.
Probab=31.76 E-value=1.2e+02 Score=27.00 Aligned_cols=28 Identities=29% Similarity=0.525 Sum_probs=19.8
Q ss_pred HHHHCCCchhccccccCCHHHHHHHHHH
Q 016922 31 RLKDYGQEDAFALWDELSPDERDHLVKD 58 (380)
Q Consensus 31 ~l~~~gQ~Hll~~~~~l~~~ek~~L~~q 58 (380)
+|-..|=-==|.+|..|+.+||+.|++-
T Consensus 22 KLD~cGvKLkL~hW~~ls~~eRq~Lv~~ 49 (145)
T TIGR02664 22 KLDLCGVKLKLEHWQQLTQAEREELVRL 49 (145)
T ss_pred ccchhhhhccHHHHhhCCHHHHHHHHhC
Confidence 3333443334789999999999998764
No 118
>PF02216 B: B domain; InterPro: IPR003132 This entry represents the immunoglobulin-binding domain found in the Staphylococcus aureus virulence factor protein A (SpA). Protein A contains five highly homologous Ig-binding domains in tandem (designated domains E, D, A, B and C), which share a common structure consisting of three helices in a closed left-handed twist. Protein A can exist in both secreted and membrane-bound forms, and has two distinct Ig-binding activities: each domain can bind Fc-gamma (the constant region of IgG involved in effector functions) and Fab (the Ig fragment responsible for antigen recognition) [].; GO: 0019865 immunoglobulin binding, 0009405 pathogenesis; PDB: 1EDL_A 1EDI_A 1EDJ_A 1EDK_A 2B88_A 2B87_A 2B89_A 1FC2_C 1DEE_H 1ZXG_A ....
Probab=25.25 E-value=1.1e+02 Score=22.58 Aligned_cols=32 Identities=13% Similarity=0.308 Sum_probs=22.7
Q ss_pred ccccCCHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 016922 43 LWDELSPDERDHLVKDIESLDLPRVDRIIRCSL 75 (380)
Q Consensus 43 ~~~~l~~~ek~~L~~ql~~id~~~~~~~~~~~~ 75 (380)
+.+.|++++|..++++|.. |.+.-..++..++
T Consensus 18 ~~~nLteeQrn~yI~~lKd-dPs~sq~v~~ea~ 49 (54)
T PF02216_consen 18 HMPNLTEEQRNGYIQSLKD-DPSRSQNVFSEAK 49 (54)
T ss_dssp CSTTS-HHHHHHHHHHHHH--GCCHHHHHHHHH
T ss_pred cCCCcCHHHHHhHHHHHhh-ChHHHHHHHHHHH
Confidence 3467999999999999987 7776666665554
No 119
>PF11460 DUF3007: Protein of unknown function (DUF3007); InterPro: IPR021562 This is a family of uncharacterised proteins found in bacteria and eukaryotes.
Probab=24.89 E-value=60 Score=27.19 Aligned_cols=27 Identities=33% Similarity=0.473 Sum_probs=22.2
Q ss_pred HCCCchhccccccCCHHHHHHHHHHHh
Q 016922 34 DYGQEDAFALWDELSPDERDHLVKDIE 60 (380)
Q Consensus 34 ~~gQ~Hll~~~~~l~~~ek~~L~~ql~ 60 (380)
+.-++.+-+-+++|+++|+++|+++|+
T Consensus 77 ~~~~~~lqkRle~l~~eE~~~L~~eie 103 (104)
T PF11460_consen 77 QLTNEELQKRLEELSPEELEALQAEIE 103 (104)
T ss_pred HHhHHHHHHHHHhCCHHHHHHHHHHhc
Confidence 445666778889999999999999886
No 120
>PF13945 NST1: Salt tolerance down-regulator
Probab=21.10 E-value=42 Score=31.10 Aligned_cols=32 Identities=31% Similarity=0.568 Sum_probs=23.6
Q ss_pred CchhccccccCCHHHHHHHHHHHhcCChHHHHHHHH
Q 016922 37 QEDAFALWDELSPDERDHLVKDIESLDLPRVDRIIR 72 (380)
Q Consensus 37 Q~Hll~~~~~l~~~ek~~L~~ql~~id~~~~~~~~~ 72 (380)
++-|=.||..|+++||..|+. ||-+.|...++
T Consensus 104 re~LkeFW~SL~eeERr~LVk----IEKe~VLkkmK 135 (190)
T PF13945_consen 104 REKLKEFWESLSEEERRSLVK----IEKEAVLKKMK 135 (190)
T ss_pred HHHHHHHHHccCHHHHHHHHH----hhHHHHHHHHH
Confidence 445668999999999998775 77666554444
No 121
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=20.98 E-value=3.5e+02 Score=19.96 Aligned_cols=56 Identities=21% Similarity=0.222 Sum_probs=35.9
Q ss_pred eeEEEEcCCCchHHHHHHHhhcCCCCCCCCceEEEEeCCeeeEecCCcccccCCCccccccCCCchhhHHHhhCChHHHH
Q 016922 182 IHWYIMTSPFTDDATRKYFEGHKYFGLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDM 261 (380)
Q Consensus 182 ip~~IMTS~~t~e~t~~~f~~~~~FGl~~~~V~~f~Q~~~P~~~~~gki~l~~~~~i~~~P~GnGgi~~aL~~~g~l~~l 261 (380)
++++-.....+.+.+++++.+. +| +..+|.+-.+|+ +-|.-+-..+|.++|-|..+
T Consensus 28 ~~~~~v~~~~~~~~~~~~l~~~--~g----------~~~vP~v~i~g~------------~igg~~~~~~~~~~g~l~~~ 83 (84)
T TIGR02180 28 YEVVELDQLSNGSEIQDYLEEI--TG----------QRTVPNIFINGK------------FIGGCSDLLALYKSGKLAEL 83 (84)
T ss_pred CEEEEeeCCCChHHHHHHHHHH--hC----------CCCCCeEEECCE------------EEcCHHHHHHHHHcCChhhh
Confidence 4456566666677788888762 22 345677666665 34555667778888887764
Done!