Query 016922
Match_columns 380
No_of_seqs 186 out of 804
Neff 6.5
Searched_HMMs 29240
Date Mon Mar 25 06:01:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016922.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016922hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2yqc_A UDP-N-acetylglucosamine 100.0 1.1E-79 3.7E-84 633.3 33.7 348 22-373 3-356 (486)
2 1jv1_A Glcnac1P uridyltransfer 100.0 3.1E-76 1.1E-80 609.7 35.5 345 23-376 1-351 (505)
3 3ogz_A UDP-sugar pyrophosphory 100.0 3.4E-75 1.2E-79 606.3 24.8 324 23-368 7-374 (630)
4 3r3i_A UTP--glucose-1-phosphat 100.0 2.9E-73 9.8E-78 583.4 18.5 302 37-370 53-366 (528)
5 3oc9_A UDP-N-acetylglucosamine 100.0 3.5E-72 1.2E-76 562.8 24.8 262 105-377 21-282 (405)
6 3gue_A UTP-glucose-1-phosphate 100.0 3.7E-67 1.3E-71 534.6 23.2 279 65-370 30-320 (484)
7 2oeg_A UTP-glucose-1-phosphate 100.0 4.5E-60 1.5E-64 487.6 21.5 290 53-370 18-324 (505)
8 2icy_A Probable UTP-glucose-1- 100.0 2.7E-57 9.2E-62 464.4 23.4 290 60-375 22-316 (469)
9 2i5k_A UTP--glucose-1-phosphat 100.0 5.3E-55 1.8E-59 449.6 21.8 303 40-377 20-331 (488)
10 3st8_A Bifunctional protein GL 99.5 2.2E-13 7.5E-18 140.0 13.1 193 118-371 11-206 (501)
11 3oam_A 3-deoxy-manno-octuloson 99.2 4E-11 1.4E-15 112.5 11.8 187 119-368 2-197 (252)
12 4ecm_A Glucose-1-phosphate thy 99.2 1.3E-10 4.4E-15 109.8 13.2 182 117-367 22-207 (269)
13 1fxo_A Glucose-1-phosphate thy 99.1 2.5E-10 8.7E-15 109.7 11.8 183 119-367 2-187 (293)
14 1mc3_A Glucose-1-phosphate thy 99.1 4.5E-10 1.5E-14 108.3 12.2 182 120-367 4-188 (296)
15 1lvw_A Glucose-1-phosphate thy 99.1 8.3E-10 2.8E-14 106.3 13.4 183 119-367 3-188 (295)
16 3brk_X Glucose-1-phosphate ade 99.0 7.6E-09 2.6E-13 103.6 17.1 198 119-368 12-221 (420)
17 3juk_A UDP-glucose pyrophospho 99.0 1.2E-09 4.1E-14 103.4 10.7 187 120-367 3-218 (281)
18 3k8d_A 3-deoxy-manno-octuloson 99.0 2.8E-09 9.7E-14 101.2 11.6 183 119-368 18-213 (264)
19 3tqd_A 3-deoxy-manno-octuloson 99.0 4.6E-09 1.6E-13 99.3 12.7 184 119-368 9-206 (256)
20 3pnn_A Conserved domain protei 99.0 2.5E-09 8.6E-14 103.1 10.8 207 119-367 5-229 (303)
21 2qh5_A PMI, ALGA, mannose-6-ph 98.9 1.3E-08 4.6E-13 98.0 13.8 186 119-363 4-198 (308)
22 1yp2_A Glucose-1-phosphate ade 98.9 2.1E-08 7.2E-13 101.1 15.3 212 119-369 20-246 (451)
23 1hm9_A GLMU, UDP-N-acetylgluco 98.8 4.5E-08 1.5E-12 98.8 15.0 183 120-369 12-195 (468)
24 4evw_A Nucleoside-diphosphate- 98.8 6.2E-09 2.1E-13 97.9 8.1 172 122-361 2-180 (255)
25 1tzf_A Glucose-1-phosphate cyt 98.8 2.4E-08 8.1E-13 92.7 11.4 190 120-364 3-200 (259)
26 4fce_A Bifunctional protein GL 98.8 9.6E-08 3.3E-12 95.9 16.4 180 119-370 8-190 (459)
27 2v0h_A Bifunctional protein GL 98.7 1.5E-07 5E-12 94.5 16.0 181 118-369 4-186 (456)
28 2e3d_A UTP--glucose-1-phosphat 98.7 4.2E-08 1.4E-12 93.8 10.5 186 119-367 8-229 (302)
29 2x65_A Mannose-1-phosphate gua 98.7 8.3E-08 2.9E-12 94.0 11.6 185 120-364 2-201 (336)
30 2ux8_A Glucose-1-phosphate uri 98.7 3E-08 1E-12 94.6 8.0 188 118-367 13-227 (297)
31 2pa4_A UTP-glucose-1-phosphate 98.7 5.8E-08 2E-12 94.2 9.3 188 120-368 13-230 (323)
32 1h7e_A 3-deoxy-manno-octuloson 98.7 2.1E-07 7.1E-12 85.7 12.6 175 119-367 2-187 (245)
33 4fcu_A 3-deoxy-manno-octuloson 98.6 2.2E-07 7.6E-12 87.5 12.4 181 120-368 2-198 (253)
34 2y6p_A 3-deoxy-manno-octuloson 98.6 2.4E-07 8.1E-12 84.6 11.9 173 119-368 2-182 (234)
35 2cu2_A Putative mannose-1-phos 98.5 3.6E-07 1.2E-11 89.5 11.2 182 119-364 2-198 (337)
36 1vic_A 3-deoxy-manno-octuloson 98.5 1.2E-06 4.1E-11 81.9 13.7 185 119-366 2-199 (262)
37 3f1c_A Putative 2-C-methyl-D-e 98.4 4.6E-06 1.6E-10 77.4 13.7 66 119-202 3-69 (246)
38 1ezi_A CMP-N-acetylneuraminic 98.4 4.3E-06 1.5E-10 76.2 13.1 181 119-366 4-189 (228)
39 1jyk_A LICC protein, CTP:phosp 98.3 1.1E-06 3.8E-11 82.2 9.0 41 119-162 25-68 (254)
40 2xwl_A 2-C-methyl-D-erythritol 98.3 7.3E-06 2.5E-10 73.9 14.0 41 119-162 2-42 (223)
41 2ggo_A 401AA long hypothetical 98.3 3.1E-06 1.1E-10 83.5 12.0 167 121-366 2-171 (401)
42 1qwj_A Cytidine monophospho-N- 98.3 6.1E-06 2.1E-10 75.6 11.9 130 119-307 3-137 (229)
43 3q80_A 2-C-methyl-D-erythritol 98.3 1.9E-05 6.4E-10 73.3 15.3 129 118-307 6-141 (231)
44 1vgw_A 4-diphosphocytidyl-2C-m 98.2 5.6E-06 1.9E-10 75.2 10.0 41 118-161 5-45 (231)
45 2waw_A MOBA relate protein; un 98.2 8.9E-06 3.1E-10 71.8 10.8 111 119-290 5-117 (199)
46 2vsh_A TARI, 2-C-methyl-D-eryt 98.2 8.2E-06 2.8E-10 74.1 10.8 66 119-202 2-68 (236)
47 2wee_A MOBA-related protein; u 98.2 7.8E-06 2.7E-10 72.2 10.2 62 119-202 5-66 (197)
48 1vpa_A 2-C-methyl-D-erythritol 98.1 9.5E-06 3.3E-10 73.9 9.5 41 119-162 13-53 (234)
49 3ngw_A Molybdopterin-guanine d 98.1 4E-05 1.4E-09 69.8 12.9 37 120-161 1-37 (208)
50 3d5n_A Q97W15_sulso; NESG, SSR 98.1 1.5E-05 5.1E-10 71.5 9.4 38 119-161 2-39 (197)
51 3rsb_A Adenosylcobinamide-phos 98.0 1.1E-05 3.8E-10 71.5 8.5 62 120-202 1-62 (196)
52 1i52_A 4-diphosphocytidyl-2-C- 98.0 2.3E-05 8E-10 71.6 10.5 40 119-161 7-46 (236)
53 1e5k_A Molybdopterin-guanine d 97.9 0.00011 3.7E-09 66.1 12.2 39 119-161 6-44 (201)
54 2yc3_A 2-C-methyl-D-erythritol 97.9 1.8E-05 6.2E-10 71.8 6.3 64 119-201 4-67 (228)
55 1w55_A ISPD/ISPF bifunctional 97.7 0.00018 6E-09 71.4 12.0 40 119-161 3-42 (371)
56 2e8b_A Probable molybdopterin- 97.6 0.00011 3.9E-09 65.9 7.7 38 119-161 14-51 (201)
57 2dpw_A Hypothetical protein TT 97.6 0.00017 5.9E-09 66.0 8.3 40 119-162 2-44 (232)
58 2xme_A CTP-inositol-1-phosphat 97.4 0.00014 4.7E-09 66.3 5.4 39 119-161 18-56 (232)
59 2px7_A 2-C-methyl-D-erythritol 97.4 7.8E-05 2.7E-09 68.6 3.7 37 119-159 25-61 (236)
60 4b4t_J 26S protease regulatory 24.3 1.1E+02 0.0038 30.1 6.1 128 131-302 175-317 (405)
No 1
>2yqc_A UDP-N-acetylglucosamine pyrophosphorylase; uridine-diphospho-N- acetylglucosamine, N-acetylglucosamine-1-phosphate, transferase; 1.90A {Candida albicans} PDB: 2yqh_A* 2yqj_A* 2yqs_A*
Probab=100.00 E-value=1.1e-79 Score=633.29 Aligned_cols=348 Identities=38% Similarity=0.675 Sum_probs=317.1
Q ss_pred CCCHHHHHHHHHHCCCchhccccccCCHHHHHHHHHHHhcC-ChHHHHHHHHHHHhcCCC-CC-CccccCCCCCcccccc
Q 016922 22 SPPPQALLERLKDYGQEDAFALWDELSPDERDHLVKDIESL-DLPRVDRIIRCSLRSQGL-PV-AAIEPVPERSVSTVEE 98 (380)
Q Consensus 22 ~~~~~~l~~~l~~~gQ~Hll~~~~~l~~~ek~~L~~ql~~i-d~~~~~~~~~~~~~~~~~-~~-~~~~p~p~~~~~~~~~ 98 (380)
++++++++++|+++||+|||+||++|+++||++|++||+.+ |++.+..+++++...+.. .. ..++|+|++.+.++.+
T Consensus 3 ~~~~~~l~~~l~~~gQ~hl~~~~~~l~~~ek~~l~~ql~~~~d~~~l~~~~~~~~~~~~~~~~~~~i~p~p~~~~~~~~~ 82 (486)
T 2yqc_A 3 VKSQQQIIDSFKQANQDQLFQYYDSLTIDQQQEFIDQLSTIEEPAKLISTVEQAIQFSQTNSTSRNFTQLPNEQTASTLD 82 (486)
T ss_dssp CCCHHHHHHHHHHTTCGGGGTTGGGSCHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHTC----CCCEECCCGGGEEETTT
T ss_pred hhhHHHHHHHHHHcCcHHHhhhhccCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHhccccccccccccCCChhhcccccc
Confidence 46678999999999999999999999999999999999999 999999999988765432 22 2489999988888877
Q ss_pred CChHHHHHHHHHhhhhhcCCCEEEEEecCCCccccCCCCCCccccccCCCCCccHHHHHHHHHHHHHHHHhhhcCCCCCC
Q 016922 99 RTMDERERWWKMGLKAISDGKLAVLLLSGGQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSG 178 (380)
Q Consensus 99 ~~~~~~~~~~~~G~~~i~~gkvavvlLAGG~GTRLg~~~PKg~~~i~l~s~ksllq~~~e~i~~l~~la~~~~~~~~~~~ 178 (380)
.+.+++.+|++.|+++|++||||+|+||||+|||||++.||||+||++|++|||||+++++|+++++++.+.++. ..
T Consensus 83 ~~~~~~~~~~~~G~~~i~~gkvavvlLaGG~GTRLg~~~PK~l~~v~l~~gk~~l~~~~e~l~~~~~~~~~~~G~---~~ 159 (486)
T 2yqc_A 83 LSKDILQNWTELGLKAIGNGEVAVLLMAGGQGTRLGSSAPKGCFNIELPSQKSLFQIQAEKILKIEQLAQQYLKS---TK 159 (486)
T ss_dssp SCHHHHHHHHHHHHHHHHTTCEEEEEEEESBCGGGTCSSBGGGCBCCCTTCCBHHHHHHHHHHHHHHHHHHHHTC---SS
T ss_pred CChHHHHHHHHHHHHHHhhCCeEEEEEcCCccccCCCCCCCccceecCCCCCcHHHHHHHHHHHHHHHhhhhcCC---Cc
Confidence 777888899999999999999999999999999999999999999999999999999999999999998765431 13
Q ss_pred CCceeEEEEcCCCchHHHHHHHhhcCCCCCCCCceEEEEeCCeeeEecCC-cccccCCCccccccCCCchhhHHHhhCCh
Q 016922 179 SAAIHWYIMTSPFTDDATRKYFEGHKYFGLESDQVTFFQQGTIPCVSKDG-RFIMETPYKVAKAPDGNGGVYSALKSSKL 257 (380)
Q Consensus 179 ~~~ip~~IMTS~~t~e~t~~~f~~~~~FGl~~~~V~~f~Q~~~P~~~~~g-ki~l~~~~~i~~~P~GnGgi~~aL~~~g~ 257 (380)
.+.||||||||++||+.|++||++|+|||+++++|+||+|+++||++.+| +++++++++++++|+||||+|.+|+++|+
T Consensus 160 ~~~ip~~ImtS~~t~~~t~~~~~~~~~fgl~~~~v~~f~Q~~~P~i~~dg~~i~l~~~~~i~~~P~G~Ggi~~aL~~sG~ 239 (486)
T 2yqc_A 160 KPIINWYIMTSGPTRNATESFFIENNYFGLNSHQVIFFNQGTLPCFNLQGNKILLELKNSICQSPDGNGGLYKALKDNGI 239 (486)
T ss_dssp CCCCEEEEEECGGGHHHHHHHHHHTGGGGSCGGGEEEEECCEEECBCTTSSSBCEEETTEECEEECCGGGHHHHHHHTTH
T ss_pred CCccCEEEEECCCCHHHHHHHHhhccccCCCcceEEEEecccceeEcCCCCccccCCCCccccCcCCchHHHHHHHHcCc
Confidence 57799999999999999999999999999999999999999999999999 99999999999999999999999999999
Q ss_pred HHHHHHCCCeEEEEEcCCCcccccCCHHHHHHHHHhCCceEEEEeecCCCCcccceEEEEcCCCCeEEEEecccChhhhh
Q 016922 258 LEDMATRGIKYIDCYGVDNALVRVADPTFLGYFIDKGVSAGAKVVRKAYPQEKVGVFVRRGKGGPLTVVEYSELDPSLAS 337 (380)
Q Consensus 258 l~~l~~~Gi~yi~v~~vDN~L~~~~Dp~~lG~~~~~~~d~~~kvv~k~~p~e~vGvl~~~~~~g~~~vvEYsel~~~~~~ 337 (380)
+++|.++|++|++|+|+||+|++++||.|+|||+.++++++++|++|+.|+|++|++|++..||+++|+||+|+++++++
T Consensus 240 Ld~l~~~G~~yi~v~~vDN~l~~~~Dp~~lg~~~~~~~~~~~~vv~k~~~~e~~Gvl~~~~~dg~~~vvEy~E~~~~~~~ 319 (486)
T 2yqc_A 240 LDDLNSKGIKHIHMYCVDNCLVKVADPIFIGFAIAKKFDLATKVVRKRDANESVGLIVLDQDNQKPCVIEYSEISQELAN 319 (486)
T ss_dssp HHHHHHHTCCEEEEEETTBTTCCTTCHHHHHHHHHHTCSEEEEEEECCSTTCCCCEEEEETTTTEEEEECGGGSCHHHHH
T ss_pred HHHHHhcCCeEEEEECCCCceeeccCHHHHHHHHHcCCCEEEEEEEcCCCCCceeEEEEEecCCCEEEEEEecCCHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999998633689999999999999887
Q ss_pred hhccCC--CcceeccccccchhccHHHHHHHHhccccC
Q 016922 338 AINQET--GRLRFCWSNVCLHMFTLDFLNQVANGLEKD 373 (380)
Q Consensus 338 ~~~~~~--g~l~f~~gNi~~~~f~l~fL~~~~~~~~~~ 373 (380)
..+ .+ |.+.|+++|||||||+++||++++...+..
T Consensus 320 ~~~-~~~~~~~~~~~~Ni~~~~~~l~~L~~~l~~~~~~ 356 (486)
T 2yqc_A 320 KKD-PQDSSKLFLRAANIVNHYYSVEFLNKMIPKWISS 356 (486)
T ss_dssp CEE-TTEEEEESSCEEEEEEEEEEHHHHHHHHHHHTTC
T ss_pred ccc-ccccccccccceeEEEEEEeHHHHHHHHHhhcCc
Confidence 554 24 778899999999999999999966555444
No 2
>1jv1_A Glcnac1P uridyltransferase isoform 1: AGX1; nucleotidyltransferase, alternative splicing; HET: UD1; 1.90A {Homo sapiens} SCOP: c.68.1.5 PDB: 1jv3_A* 1jvg_A* 1jvd_A* 1vm8_A*
Probab=100.00 E-value=3.1e-76 Score=609.74 Aligned_cols=345 Identities=43% Similarity=0.694 Sum_probs=315.6
Q ss_pred CCHHHHHHHHHHCCCchhccccccCCHHHHHHHHHHHhcCChHHHHHHHHHHHhcC-C-----CCCCccccCCCCCcccc
Q 016922 23 PPPQALLERLKDYGQEDAFALWDELSPDERDHLVKDIESLDLPRVDRIIRCSLRSQ-G-----LPVAAIEPVPERSVSTV 96 (380)
Q Consensus 23 ~~~~~l~~~l~~~gQ~Hll~~~~~l~~~ek~~L~~ql~~id~~~~~~~~~~~~~~~-~-----~~~~~~~p~p~~~~~~~ 96 (380)
|++++|+++|+++||+|||+||++|+++||++|++||.++|++.+..+|+++++.. . ...+.++|+|++.+.++
T Consensus 1 ~~~~~l~~~l~~~gQ~hl~~~~~~l~~~ek~~l~~ql~~~d~~~~~~~~~~~~~~~~~s~~~~~~~~~i~p~p~~~~~~~ 80 (505)
T 1jv1_A 1 MNINDLKLTLSKAGQEHLLRFWNELEEAQQVELYAELQAMNFEELNFFFQKAIEGFNQSSHQKNVDARMEPVPREVLGSA 80 (505)
T ss_dssp CCHHHHHHHHHHTTCGGGGTTGGGSCHHHHHHHHHHHHTCCHHHHHHHHHHHHHCC-----------CCBCCCGGGEEET
T ss_pred CCHHHHHHHHHHcCcHHHHhhhhcCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHhhhhccccCcccccccCCChHhcccc
Confidence 46788999999999999999999999999999999999999999999999887531 1 12356899999888877
Q ss_pred ccCChHHHHHHHHHhhhhhcCCCEEEEEecCCCccccCCCCCCccccccCCCCCccHHHHHHHHHHHHHHHHhhhcCCCC
Q 016922 97 EERTMDERERWWKMGLKAISDGKLAVLLLSGGQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGG 176 (380)
Q Consensus 97 ~~~~~~~~~~~~~~G~~~i~~gkvavvlLAGG~GTRLg~~~PKg~~~i~l~s~ksllq~~~e~i~~l~~la~~~~~~~~~ 176 (380)
.+ +.++..+|++.|+++|+.|||++|+||||+|||||++.||+|+||+++++|||||+++++|+++|+++.+.++
T Consensus 81 ~~-~~~~~~~~~~~Gl~~i~~~kvavViLAGG~GTRLg~~~PK~l~pv~~~~gk~~le~~~e~l~~lq~la~~~~G---- 155 (505)
T 1jv1_A 81 TR-DQDQLQAWESEGLFQISQNKVAVLLLAGGQGTRLGVAYPKGMYDVGLPSRKTLFQIQAERILKLQQVAEKYYG---- 155 (505)
T ss_dssp TT-TGGGHHHHHHHHHHHHHTTCEEEEEECCCCCCTTSCSSCGGGCCCCCTTCCCHHHHHHHHHHHHHHHHHHHHS----
T ss_pred cC-ChHHHHHHHHHhHHhhccCceEEEEEcCCccccCCCCCCCccceeecCCCCcHHHHHHHHHHHHHHHHHHhcC----
Confidence 76 5567789999999999999999999999999999999999999999999999999999999999999876553
Q ss_pred CCCCceeEEEEcCCCchHHHHHHHhhcCCCCCCCCceEEEEeCCeeeEecCCcccccCCCccccccCCCchhhHHHhhCC
Q 016922 177 SGSAAIHWYIMTSPFTDDATRKYFEGHKYFGLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSK 256 (380)
Q Consensus 177 ~~~~~ip~~IMTS~~t~e~t~~~f~~~~~FGl~~~~V~~f~Q~~~P~~~~~gki~l~~~~~i~~~P~GnGgi~~aL~~~g 256 (380)
..+.|||+||||++||+.|++||++|+|||+++++|++|.|+++||++.+|+++++++++++++|+||||+|++|.++|
T Consensus 156 -~~~~ip~vImtS~~t~e~t~~~f~~~~~fGl~~~~I~~f~Q~~~P~i~~~g~~~l~~~~~~e~~P~GtGG~~~~L~~sg 234 (505)
T 1jv1_A 156 -NKCIIPWYIMTSGRTMESTKEFFTKHKYFGLKKENVIFFQQGMLPAMSFDGKIILEEKNKVSMAPDGNGGLYRALAAQN 234 (505)
T ss_dssp -SCCCCCEEEEECTTTHHHHHHHHHHTGGGGSCGGGEEEEECCEEECEETTSCBCEEETTEECEEECCGGGHHHHHHHTT
T ss_pred -CCccceEEEEecCCCHHHHHHHHHhhhhcCCCcCceEEEEecceEEEcCCCcccccCCcccccCCCCchHHHHHHHHcC
Confidence 2367999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHCCCeEEEEEcCCCcccccCCHHHHHHHHHhCCceEEEEeecCCCCcccceEEEEcCCCCeEEEEecccChhhh
Q 016922 257 LLEDMATRGIKYIDCYGVDNALVRVADPTFLGYFIDKGVSAGAKVVRKAYPQEKVGVFVRRGKGGPLTVVEYSELDPSLA 336 (380)
Q Consensus 257 ~l~~l~~~Gi~yi~v~~vDN~L~~~~Dp~~lG~~~~~~~d~~~kvv~k~~p~e~vGvl~~~~~~g~~~vvEYsel~~~~~ 336 (380)
++++|.++|++|++|+|+||+|++++||.|+|||..++++++++|++|+.+.+++|+||+. +|+++|+||+|+|++.+
T Consensus 235 ~L~~l~~~g~e~~~V~n~Dn~L~~~~d~~~lg~~~~~~~~~~~~v~~k~~~~e~~Gvl~~~--dg~~~vvEy~E~p~~~~ 312 (505)
T 1jv1_A 235 IVEDMEQRGIWSIHVYCVDNILVKVADPRFIGFCIQKGADCGAKVVEKTNPTEPVGVVCRV--DGVYQVVEYSEISLATA 312 (505)
T ss_dssp HHHHHHHTTCCEEEEEETTBTTCCTTCHHHHHHHHHTTCSEEEEEEECCSTTCSCCEEEEE--TTEEEEECGGGSCHHHH
T ss_pred cHHHHHhcCCCEEEEEECCccccccchHHHHHHHHHcCCCEEEEEEEccCCccCcceEEEE--CCeEEEEEEeeCCHHHh
Confidence 9999999999999999999998999999999999999999999999998999999999997 78999999999999987
Q ss_pred hhhccCCCcceeccccccchhccHHHHHHHHhccccCCCC
Q 016922 337 SAINQETGRLRFCWSNVCLHMFTLDFLNQVANGLEKDSVL 376 (380)
Q Consensus 337 ~~~~~~~g~l~f~~gNi~~~~f~l~fL~~~~~~~~~~~~~ 376 (380)
+..+ ++|.+.|+++|||||||+++||+++.+.++..+++
T Consensus 313 ~~~~-~~g~~~~~~~N~~~~~f~l~~L~~i~~~~~~~l~~ 351 (505)
T 1jv1_A 313 QKRS-SDGRLLFNAGNIANHFFTVPFLRDVVNVYEPQLQH 351 (505)
T ss_dssp HCBC-TTSSBSSCEEEEEEEEEEHHHHHHHHHTTGGGCCC
T ss_pred hhcc-cccccccceeeEEEEEecHHHHHHHHHhhcccCCc
Confidence 7654 46888999999999999999999999876665554
No 3
>3ogz_A UDP-sugar pyrophosphorylase; LEFT handed beta helix, rossmann fold, UDP sugar pyrophospho transferase; 2.03A {Leishmania major} PDB: 3oh3_A* 3oh1_A* 3oh0_A* 3oh2_A* 3oh4_A*
Probab=100.00 E-value=3.4e-75 Score=606.27 Aligned_cols=324 Identities=22% Similarity=0.292 Sum_probs=279.9
Q ss_pred CCHHHHHHHHHH--CCCchhcccccc-CC--HHHHHHHHHHHhcCChHH---HHHHHH---HHHhc--CCCCCCccccCC
Q 016922 23 PPPQALLERLKD--YGQEDAFALWDE-LS--PDERDHLVKDIESLDLPR---VDRIIR---CSLRS--QGLPVAAIEPVP 89 (380)
Q Consensus 23 ~~~~~l~~~l~~--~gQ~Hll~~~~~-l~--~~ek~~L~~ql~~id~~~---~~~~~~---~~~~~--~~~~~~~~~p~p 89 (380)
++.++|+++|++ +||+|||+||++ |+ ++||++|++||..+|+++ +..+++ +++.+ ..++.+.++|+|
T Consensus 7 ~~~~~L~~~l~~~~~gQ~HLf~~w~~~l~~~~~e~~~L~~qL~~~d~~~~~gl~~~~~~a~~~l~~~~~~~~~~~~~p~P 86 (630)
T 3ogz_A 7 SNLQALREELCTPGLDQGHLFEGWPETVDECNERQIALLTDLYMFSNMYPGGVAQYIRNGHELLARESEEVDFAALEMPP 86 (630)
T ss_dssp HHHHHHHHHHTSTTTCCGGGGTTCCSSGGGCCHHHHHHHHHHHHGGGTSTTHHHHHHHHHHHHHHHHTSCCCCSEEECCS
T ss_pred hhHHHHHHHhhhccCCchhhhhhcccccCCCHHHHHHHHHHHHhhChhhhhhHHHHHHHHHHHhhccccCCcccccccCC
Confidence 345689999997 999999999999 99 999999999999999765 444443 33322 234668899777
Q ss_pred CCCc-cccccCChHHHHHHHHHhhhhhcCCCEEEEEecCCCccccCCCCCCccccccCCCCCccHHHHHHHHHHHHHHHH
Q 016922 90 ERSV-STVEERTMDERERWWKMGLKAISDGKLAVLLLSGGQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAA 168 (380)
Q Consensus 90 ~~~~-~~~~~~~~~~~~~~~~~G~~~i~~gkvavvlLAGG~GTRLg~~~PKg~~~i~l~s~ksllq~~~e~i~~l~~la~ 168 (380)
.... .+++. ..+++.+|++.|+++|+ |+|||+||||||||||+++||+++|+++++++||||++++||++ +
T Consensus 87 ~~~~~~~l~~-~~~~~~~~~~~Gl~~i~--kvavvllaGGlGTRLG~~~pK~~lpv~~~s~ks~lql~~e~i~~---~-- 158 (630)
T 3ogz_A 87 LIFEAPSLHR-RTAERTALENAGTAMLC--KTVFVLVAGGLGERLGYSSIKVSLPVETATNTTYLAYYLRWAQR---V-- 158 (630)
T ss_dssp CEEECCCTTC-CCHHHHHHHHHHHHHGG--GEEEEEECCCEEGGGTEEEEGGGSBSCTTTCCBHHHHHHHHHHH---H--
T ss_pred CCCccccccC-CHHHHHHHHHHhHHHHh--hceEEEecCCcccccCCCCCcccceecCCCCCcHHHHHHHHHHH---H--
Confidence 5322 23332 44678899999999998 99999999999999999999999999999999999999999982 2
Q ss_pred hhhcCCCCCCCCceeEEEEcCCCchHHHHHHHhhcCCCCCCCCceEEEEeCCeeeEe-cCCcccccCCCccccccCCCch
Q 016922 169 QVTSEGGGSGSAAIHWYIMTSPFTDDATRKYFEGHKYFGLESDQVTFFQQGTIPCVS-KDGRFIMETPYKVAKAPDGNGG 247 (380)
Q Consensus 169 ~~~~~~~~~~~~~ip~~IMTS~~t~e~t~~~f~~~~~FGl~~~~V~~f~Q~~~P~~~-~~gki~l~~~~~i~~~P~GnGg 247 (380)
+++.||||||||+.||+.|++||++ ||+++++|+||+|+++||++ .+|+++++++++++++|+||||
T Consensus 159 ---------~g~~iPl~IMTS~~T~~~T~~~~~~---fgl~~~~V~~F~Q~~~P~i~~~~g~l~l~~~~~i~~~P~GhGd 226 (630)
T 3ogz_A 159 ---------GGKEVPFVIMTSDDTHDRTLQLLRE---LQLEVPNLHVLKQGQVFCFADSAAHLALDETGKLLRKPHGHGD 226 (630)
T ss_dssp ---------HCTTCCEEEEECTTTHHHHHHHHHH---TTCCCTTEEEEECCCEECBSSTTCCBCBCTTSSBCEECCCTTH
T ss_pred ---------hCCCCcEEEEecccchHHHHHHHHH---hCCCcccEEEEEcCCEEEEecCCCceeecCCCcccCCCCCCHH
Confidence 2467999999999999999999998 99999999999999999995 7899999999999999999999
Q ss_pred hhHHHhhCC------------------hHHHHHHCCCeEEEEEcCCCcccccCCHHHHHHHHHhCCceEEEEeecCCCCc
Q 016922 248 VYSALKSSK------------------LLEDMATRGIKYIDCYGVDNALVRVADPTFLGYFIDKGVSAGAKVVRKAYPQE 309 (380)
Q Consensus 248 i~~aL~~~g------------------~l~~l~~~Gi~yi~v~~vDN~L~~~~Dp~~lG~~~~~~~d~~~kvv~k~~p~e 309 (380)
+|.+|+++| ++++|.++|++|+||+||||+|++++||.||||++++++||++||++| .|.|
T Consensus 227 v~~aL~~sG~~~~~~~~~~~~~~~~~~lLd~l~~~Gieyi~v~~vDN~L~~~~DP~~lG~~~~~~~d~~~kvv~r-~p~E 305 (630)
T 3ogz_A 227 VHSLIYNATVKRDVVPDSGDGTATAQPLVNDWLAAGYESIVFIQDTNAGATITIPISLALSAEHSLDMNFTCIPR-VPKE 305 (630)
T ss_dssp HHHHHHHCBC--------------CCBHHHHHHHTTCCEEEEECTTBTTHHHHHHHHHHHHHHTTCSEEEEEECC-CSSC
T ss_pred HHHHHHHcCCCcccccccccccccHHHHHHHHHHcCCEEEEEEccCCccccccCHHHhHHHHhcCCCEEEEEEEC-CCCc
Confidence 999999999 999999999999999999999999999999999999999999999997 5899
Q ss_pred ccceEEEE-cCCCCe---EEEEecccChhhhhhhccCCCc-------ceeccccccchhccHHHHHHHHh
Q 016922 310 KVGVFVRR-GKGGPL---TVVEYSELDPSLASAINQETGR-------LRFCWSNVCLHMFTLDFLNQVAN 368 (380)
Q Consensus 310 ~vGvl~~~-~~~g~~---~vvEYsel~~~~~~~~~~~~g~-------l~f~~gNi~~~~f~l~fL~~~~~ 368 (380)
++|++|++ +.||++ +||||+|+++++++..+ ++|. +.|++||||||||+++.+.+.+.
T Consensus 306 ~vG~l~~~~~~dGk~~~v~vVEYsei~~~~~~~~~-~~g~~~~~~~~~~~f~GNtNnl~~~L~a~~~~l~ 374 (630)
T 3ogz_A 306 PIGLLCRTKKNSGDPWLVANVEYNVFAEVSRALNK-DGGDEVSDPTGFSPFPGSVNTLVFKLSSYVDRLR 374 (630)
T ss_dssp SSCEEEEEESSTTSCCEEEEECHHHHHHHHHHC-------------CCCSSCEEEEEEEEEHHHHHHHHH
T ss_pred ceeeEEEEecCCCceeeeeEEEeccCCHhHhhccC-CCccccccccccccccccceeeeEEHHHHHHHHH
Confidence 99999985 347898 56999999999887543 2444 77888999999999986655544
No 4
>3r3i_A UTP--glucose-1-phosphate uridylyltransferase; rossmann fold, beta barrel, nucleotidyltransferase; 3.57A {Homo sapiens} PDB: 3r2w_A
Probab=100.00 E-value=2.9e-73 Score=583.39 Aligned_cols=302 Identities=20% Similarity=0.269 Sum_probs=265.1
Q ss_pred CchhccccccCCHHHHHHHHHHHhcCChHHHHHHHHHHHhcC--CCCCCccccCCCCCccccccCChHHHHHHHHHhhhh
Q 016922 37 QEDAFALWDELSPDERDHLVKDIESLDLPRVDRIIRCSLRSQ--GLPVAAIEPVPERSVSTVEERTMDERERWWKMGLKA 114 (380)
Q Consensus 37 Q~Hll~~~~~l~~~ek~~L~~ql~~id~~~~~~~~~~~~~~~--~~~~~~~~p~p~~~~~~~~~~~~~~~~~~~~~G~~~ 114 (380)
|.||+++|++|++++|+.|.+|++.+ ..+|++++... ..+|+.|+|+|++.+.+++++. .|+..+...
T Consensus 53 ~~~l~~~~~~l~~~~~~~~~~el~~f-----~~lf~r~l~~~~~~~~~~~i~p~p~~~~~~~~~l~-----~~~~~~~~~ 122 (528)
T 3r3i_A 53 KKELEKILTTASSHEFEHTKKDLDGF-----RKLFHRFLQEKGPSVDWGKIQRPPEDSIQPYEKIK-----ARGLPDNIS 122 (528)
T ss_dssp TSSSTTTSSSCCTTTTHHHHHHHHHH-----HHHHHHHHHC-------CCCCCCCTTTSEEHHHHT-----TSCCCCSSC
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHH-----HHHHHHHHhhccCCCCHHHCcCCCHHHccCHhhcC-----Cccccchhh
Confidence 99999999999999999999988875 77888888754 3578999999998887776543 234444456
Q ss_pred hcCCCEEEEEecCCCccccCCCCCCccccccCCCCCccHHHHHHHHHHHHHHHHhhhcCCCCCCCCceeEEEEcCCCchH
Q 016922 115 ISDGKLAVLLLSGGQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDD 194 (380)
Q Consensus 115 i~~gkvavvlLAGG~GTRLg~~~PKg~~~i~l~s~ksllq~~~e~i~~l~~la~~~~~~~~~~~~~~ip~~IMTS~~t~e 194 (380)
+..+|||||+||||||||||+++|||++|+ +++|||||++++||+++++. +++.||||||||+.||+
T Consensus 123 ~~l~kvavvlLaGGlGTRLG~~~PK~~i~V--~sgktflql~~eqI~~l~~~-----------~g~~IPl~IMTS~~T~~ 189 (528)
T 3r3i_A 123 SVLNKLVVVKLNGGLGTSMGCKGPKSLIGV--RNENTFLDLTVQQIEHLNKT-----------YNTDVPLVLMNSFNTDE 189 (528)
T ss_dssp TTCTTEEEEEECCCBCTTTTCSSBGGGSEE--ETTEEHHHHHHHHHHHHHHH-----------HTCCCCEEEEECTTTHH
T ss_pred hhcCceEEEEeCCCCccccCCCCCccceec--CCCCcHHHHHHHHHHHHHHH-----------hCCCCCEEEEeccchhH
Confidence 677899999999999999999999999877 69999999999999999875 35779999999999999
Q ss_pred HHHHHHhhcCCCCCCCCceEEEEeCCeeeEecCCcccccC------CCccccccCCCchhhHHHhhCChHHHHHHCCCeE
Q 016922 195 ATRKYFEGHKYFGLESDQVTFFQQGTIPCVSKDGRFIMET------PYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKY 268 (380)
Q Consensus 195 ~t~~~f~~~~~FGl~~~~V~~f~Q~~~P~~~~~gki~l~~------~~~i~~~P~GnGgi~~aL~~~g~l~~l~~~Gi~y 268 (380)
+|++||++|+||| .+|++|+|+++||++.+|++++++ +++++|+|+||||+|.+|+++|++++|.++|++|
T Consensus 190 ~T~~~f~k~~~fg---~~V~~F~Q~~~P~i~~dg~l~l~~~~~~~~~~~~~~~P~GhGdiy~aL~~sGlLd~l~~~Giey 266 (528)
T 3r3i_A 190 DTKKILQKYNHCR---VKIYTFNQSRYPRINKESLLPVAKDVSYSGENTEAWYPPGHGDIYASFYNSGLLDTFIGEGKEY 266 (528)
T ss_dssp HHHSSCGGGTTSS---CCEEEEECCCBCCEETTTCCCC-------------CBCCBTTTHHHHHHHHSHHHHHHHTTCCE
T ss_pred HHHHHHHhcCccC---CCeEEEEeCCeeeEecCCceecccccccCCCcceeeCcCCChHHHHHHHHCChHHHHHhcCCEE
Confidence 9999999999999 489999999999999999999987 7899999999999999999999999999999999
Q ss_pred EEEEcCCCcccccCCHHHHHHHHHh----CCceEEEEeecCCCCcccceEEEEcCCCCeEEEEecccChhhhhhhccCCC
Q 016922 269 IDCYGVDNALVRVADPTFLGYFIDK----GVSAGAKVVRKAYPQEKVGVFVRRGKGGPLTVVEYSELDPSLASAINQETG 344 (380)
Q Consensus 269 i~v~~vDN~L~~~~Dp~~lG~~~~~----~~d~~~kvv~k~~p~e~vGvl~~~~~~g~~~vvEYsel~~~~~~~~~~~~g 344 (380)
++|+||||++++ +||.||||++.+ ++++++||++|+.|+|++|++|++ ||+++||||+|+|++.+++ .+|
T Consensus 267 i~v~nvDNlga~-vDp~~Lg~~~~~~~~~~~d~~~kVv~Kt~~dek~Gvl~~~--dGk~~vvEyseip~e~~~~---~~g 340 (528)
T 3r3i_A 267 IFVSNIDNLGAT-VDLYILNHLMNPPNGKRCEFVMEVTNKTRADVKGGTLTQY--EGKLRLVEIAQVPKAHVDE---FKS 340 (528)
T ss_dssp EEEEETTBTTCC-CCHHHHHHHSSCSSSCCCSEEEEECCCCTTCCSSCEEECS--SSSCEEECTTSSCGGGTTT---SSC
T ss_pred EEEEccCCcccc-cCHHHHHHHHhcccccCCcEEEEEeEccccCCcccEEEEE--CCeEEEEEecCCChhHhhc---cCC
Confidence 999999999876 599999999998 999999999999999999999996 7999999999999998764 368
Q ss_pred cceeccccccchhccHHHHHHHHhcc
Q 016922 345 RLRFCWSNVCLHMFTLDFLNQVANGL 370 (380)
Q Consensus 345 ~l~f~~gNi~~~~f~l~fL~~~~~~~ 370 (380)
.++|+++|||||||+++||+++++..
T Consensus 341 ~~~f~~~Ntnnlw~~L~~L~~v~~~~ 366 (528)
T 3r3i_A 341 VSKFKIFNTNNLWISLAAVKRLQEQN 366 (528)
T ss_dssp SSSCCCCEEEEEEEEHHHHHHHHHTT
T ss_pred cccCCeEEEEEEEEEHHHHHHHHHhC
Confidence 89999999999999999999999854
No 5
>3oc9_A UDP-N-acetylglucosamine pyrophosphorylase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.80A {Entamoeba histolytica}
Probab=100.00 E-value=3.5e-72 Score=562.75 Aligned_cols=262 Identities=35% Similarity=0.618 Sum_probs=245.5
Q ss_pred HHHHHHhhhhhcCCCEEEEEecCCCccccCCCCCCccccccCCCCCccHHHHHHHHHHHHHHHHhhhcCCCCCCCCceeE
Q 016922 105 ERWWKMGLKAISDGKLAVLLLSGGQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHW 184 (380)
Q Consensus 105 ~~~~~~G~~~i~~gkvavvlLAGG~GTRLg~~~PKg~~~i~l~s~ksllq~~~e~i~~l~~la~~~~~~~~~~~~~~ip~ 184 (380)
++|++.|+++|++||||+|+||||+|||||++.||+|+||++|++|||||+++++|+++|+++.++..+ .++.|||
T Consensus 21 ~~~~~~Gl~~i~~gkvavvlLAGG~GTRLG~~~PK~~~~Vgl~~gks~lq~~~e~i~~lq~l~~~~~~~----~~~~Ip~ 96 (405)
T 3oc9_A 21 KEHYYRGLELISQGKTALITPAGGQGSRLGFEHPKGMFVLPFEIPKSIFQMTSERLLRLQELASEYSHQ----KNVMIHW 96 (405)
T ss_dssp HHHHHHHHHHHHTTCEEEEEECCSBCTTTTCCSBGGGCEECSSSCEEHHHHHHHHHHHHHHHHHHHHCC----SCCCCEE
T ss_pred HHHHHHHHHHHhcCceEEEEecCCCcccccCCCCCccccccCCCCCcHHHHHHHHHHHHHHHHhhhccc----cCCCCCE
Confidence 479999999999999999999999999999999999999999999999999999999999998765211 3567999
Q ss_pred EEEcCCCchHHHHHHHhhcCCCCCCCCceEEEEeCCeeeEecCCcccccCCCccccccCCCchhhHHHhhCChHHHHHHC
Q 016922 185 YIMTSPFTDDATRKYFEGHKYFGLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATR 264 (380)
Q Consensus 185 ~IMTS~~t~e~t~~~f~~~~~FGl~~~~V~~f~Q~~~P~~~~~gki~l~~~~~i~~~P~GnGgi~~aL~~~g~l~~l~~~ 264 (380)
|||||++||+.|++||++|+|||+++++|++|.|+++||+|.+|+++|+++++++++|+||||+|++|+++|++++|.++
T Consensus 97 ~IMtS~~t~e~t~~~f~~~~~fGl~~~~i~~f~Q~~~P~i~~dg~i~l~~~~~i~~~P~GhGgi~~aL~~sG~Ld~l~~~ 176 (405)
T 3oc9_A 97 FLMTNEETIEEINNYFKEHQYFGLSSEQIHCFPQGMLPVVDFNGKILYEKKDKPYMAPNGHGGLFKALKDNGILEFMNEK 176 (405)
T ss_dssp EEEECTTTHHHHHHHHHHTGGGGSCTTSEEEEECCEEECBCTTSCBCEEETTEECEEECCGGGHHHHHHHTTHHHHHHHH
T ss_pred EEEeCCccHHHHHHHHHhCcccCCCccceEEEeeCceeEEecCCCeecCCCCccccccCCChHHHHHHHHCCcHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEEcCCCcccccCCHHHHHHHHHhCCceEEEEeecCCCCcccceEEEEcCCCCeEEEEecccChhhhhhhccCCC
Q 016922 265 GIKYIDCYGVDNALVRVADPTFLGYFIDKGVSAGAKVVRKAYPQEKVGVFVRRGKGGPLTVVEYSELDPSLASAINQETG 344 (380)
Q Consensus 265 Gi~yi~v~~vDN~L~~~~Dp~~lG~~~~~~~d~~~kvv~k~~p~e~vGvl~~~~~~g~~~vvEYsel~~~~~~~~~~~~g 344 (380)
|++|++|+|+||+|++++||.|+|||++++++++++|++|+.|+|++|+||+. ||+++||||+|+|++ ++.. +.+|
T Consensus 177 Gieyi~v~nvDN~L~~~~Dp~~lg~~~~~~~d~~~kvv~k~~~dek~Gvl~~~--dg~~~vvEysei~~e-~e~~-~~~g 252 (405)
T 3oc9_A 177 GIKYSVAHNVDNILCKDVDPNMIGYMDLLQSEICIKIVKKGFKEEKVGVLVKE--QERIKVVEYTELTDE-LNKQ-LSNG 252 (405)
T ss_dssp TCCEEEEECTTBTTCCSSCHHHHHHHHHTTCSEEEEEEECCSTTCSCCEEEEE--TTEEEEECGGGCCTT-TTCB-CTTS
T ss_pred CCEEEEEEeCCCcccccCCHHHHHHHHHcCCCEEEEEEECCCCCCccceEEEE--CCeeEEEEEeeCCHH-Hhhc-CCCC
Confidence 99999999999999999999999999999999999999999999999999997 799999999999999 5543 4689
Q ss_pred cceeccccccchhccHHHHHHHHhccccCCCCC
Q 016922 345 RLRFCWSNVCLHMFTLDFLNQVANGLEKDSVLL 377 (380)
Q Consensus 345 ~l~f~~gNi~~~~f~l~fL~~~~~~~~~~~~~~ 377 (380)
.+.|+++|||||+|+++||++++ +..++++
T Consensus 253 ~l~fn~~Ni~~h~fs~~fL~~i~---~~~l~~h 282 (405)
T 3oc9_A 253 EFIYNCGHISINGYSTSFLEKAA---EYQLPYH 282 (405)
T ss_dssp CBSSCEEEEEEEEEEHHHHHHHT---TCCCCCE
T ss_pred ceeeccceeEeeecCHHHHHHhh---hccCCcE
Confidence 99999999999999999999998 3445443
No 6
>3gue_A UTP-glucose-1-phosphate uridylyltransferase 2; phosphatase, UDP, structural GE structural genomics consortium, SGC; HET: UPG PG4; 1.92A {Trypanosoma brucei}
Probab=100.00 E-value=3.7e-67 Score=534.63 Aligned_cols=279 Identities=19% Similarity=0.257 Sum_probs=245.4
Q ss_pred HHHHHHHHHHHhcC--CCCCCccccCCCCCccccccCChHHHHHHHHHhhhhhcCCCEEEEEecCCCccccCCCCCCccc
Q 016922 65 PRVDRIIRCSLRSQ--GLPVAAIEPVPERSVSTVEERTMDERERWWKMGLKAISDGKLAVLLLSGGQGTRLGSSDPKGCV 142 (380)
Q Consensus 65 ~~~~~~~~~~~~~~--~~~~~~~~p~p~~~~~~~~~~~~~~~~~~~~~G~~~i~~gkvavvlLAGG~GTRLg~~~PKg~~ 142 (380)
..|.++|+++++.. .++|+.|+|+. .+.++++.+.. ..|+++|+ |||||+||||||||||+++|||++
T Consensus 30 ~~f~~~~~~~~~~~~~~i~~~~i~p~~--~~~~~~~l~~~------~~G~~~L~--kvavvlLaGGlGTRLG~~~pKg~~ 99 (484)
T 3gue_A 30 HIFLIQHALVRKGETGYIPEKSISPVE--SLPFLQGIETK------GENTALLR--QAVVLKLNGGLGTGMGLNGPKSLL 99 (484)
T ss_dssp HHHHHHHHHHHTTCCCCCCGGGCEECC--CCCBHHHHCCS------SCCHHHHT--TEEEEEEECCCCGGGTCSSCGGGS
T ss_pred HHHHHHHHHHhcCCCCccCHhhCCChh--ccCChhhcCCc------hHHHHHHh--hcEEEEEcCCcccccCCCCCceee
Confidence 34666777766543 36889999886 34555554321 16999998 999999999999999999999999
Q ss_pred cccCCCCCccHHHHHHHHHHHHHHHHhhhcCCCCCCCCceeEEEEcCCCchHHHHHHHhhcCCCCCCCCceEEEEeCCee
Q 016922 143 NIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRKYFEGHKYFGLESDQVTFFQQGTIP 222 (380)
Q Consensus 143 ~i~l~s~ksllq~~~e~i~~l~~la~~~~~~~~~~~~~~ip~~IMTS~~t~e~t~~~f~~~~~FGl~~~~V~~f~Q~~~P 222 (380)
||+ ++|||||++++||+++++. +++.||||||||+.||++|++||++|+|||+++++|++|+|+++|
T Consensus 100 ~v~--sgksflql~~eqI~~l~~~-----------~~~~iPl~IMTS~~T~~~T~~~~~k~~~Fgl~~~~v~~F~Q~~~P 166 (484)
T 3gue_A 100 QVK--NGQTFLDFTALQLEHFRQV-----------RNCNVPFMLMNSFSTSGETKNFLRKYPTLYEVFDSDIELMQNRVP 166 (484)
T ss_dssp EEE--TTEEHHHHHHHHHHHHHHH-----------HTCCCCEEEEECTTTHHHHHHHGGGCHHHHTTCCCCCEEECCCEE
T ss_pred ecC--CCCcHHHHHHHHHHHHHHH-----------cCCCceEEEECCcchhHHHHHHHHhCcccCCCccceEEEEeCcee
Confidence 998 9999999999999999876 357799999999999999999999999999999999999999999
Q ss_pred eEecCCcc--cccCCCccccccCCCchhhHHHhhCChHHHHHHCCCeEEEEEcCCCcccccCCHHHHHHHHHhCCceEEE
Q 016922 223 CVSKDGRF--IMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGVDNALVRVADPTFLGYFIDKGVSAGAK 300 (380)
Q Consensus 223 ~~~~~gki--~l~~~~~i~~~P~GnGgi~~aL~~~g~l~~l~~~Gi~yi~v~~vDN~L~~~~Dp~~lG~~~~~~~d~~~k 300 (380)
|++.+|+. +++++++++|+|+||||+|.+|+++|++++|.++|++|+||+|+|| |++++||.|+|||+++++||++|
T Consensus 167 ~i~~dg~~~i~~~~~~~i~~~P~GhGdiy~aL~~sGiLd~l~~~Gieyi~v~~vDN-L~a~~Dp~~lG~~~~~~~d~~~k 245 (484)
T 3gue_A 167 KIRQDNFFPVTYEADPTCEWVPPGHGDVYTVLYSSGKLDYLLGKGYRYMFISNGDN-LGATLDVRLLDYMHEKQLGFLME 245 (484)
T ss_dssp CEETTTCCBCCCTTCGGGGEECCCGGGHHHHHHHHSHHHHHHHTTCCEEEEEETTC-TTCCCCHHHHHHHHHTTCSEEEE
T ss_pred eEecCCCceeecCCCCceeeccCCchHHHHHHHhCCcHHHHHHcCCEEEEEEcCCC-cccccCHHHHHHHHhcCCCEEEE
Confidence 99999984 4577889999999999999999999999999999999999999999 78999999999999999999999
Q ss_pred EeecCCCCcccceEEEE--------cCCCCeEEEEecccChhhhhhhccCCCcceeccccccchhccHHHHHHHHhcc
Q 016922 301 VVRKAYPQEKVGVFVRR--------GKGGPLTVVEYSELDPSLASAINQETGRLRFCWSNVCLHMFTLDFLNQVANGL 370 (380)
Q Consensus 301 vv~k~~p~e~vGvl~~~--------~~~g~~~vvEYsel~~~~~~~~~~~~g~l~f~~gNi~~~~f~l~fL~~~~~~~ 370 (380)
|++|+.|+|++|+||++ +.+|+++|+||+|+|++.+++.++.+|.+.|+++|||+| +++|+++++..
T Consensus 246 vv~Kt~~dekgG~l~~~~~~~~~~~~~dG~~~vvEyseip~e~~~~f~~~~g~~~FNtnNi~~~---l~~l~~~l~~~ 320 (484)
T 3gue_A 246 VCRRTESDKKGGHLAYKDVIDETTGQTRRRFVLRESAQCPKEDEDSFQNIAKHCFFNTNNIWIN---LMELKKMMDEQ 320 (484)
T ss_dssp EEECCTTCCSSEEEEEEC--------CCCEEEEEEGGGSCGGGHHHHTCTTTSCEEEEEEEEEE---HHHHHHHHHHT
T ss_pred EEECCCCCCceeEEEEEccccccccCCCCCEEEEEeccCCHHHHhhhcCCCCceEeEeeeEEEE---HHHHHHHHHhc
Confidence 99999999999999997 347999999999999998876555689999987787755 56777776644
No 7
>2oeg_A UTP-glucose-1-phosphate uridylyltransferase 2, putative; rossmann-fold, beta-helix, pyrophosphorylase; HET: UPG; 2.30A {Leishmania major} PDB: 2oef_A*
Probab=100.00 E-value=4.5e-60 Score=487.64 Aligned_cols=290 Identities=20% Similarity=0.266 Sum_probs=258.0
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhcCC--CCCCccccCCCCCccccccCChHHHHHHHHHhhhhhcCCCEEEEEecCCCc
Q 016922 53 DHLVKDIESLDLPRVDRIIRCSLRSQG--LPVAAIEPVPERSVSTVEERTMDERERWWKMGLKAISDGKLAVLLLSGGQG 130 (380)
Q Consensus 53 ~~L~~ql~~id~~~~~~~~~~~~~~~~--~~~~~~~p~p~~~~~~~~~~~~~~~~~~~~~G~~~i~~gkvavvlLAGG~G 130 (380)
.-..+++...|++.|.++|++++.... .+|+.|+|+ +.+.+++++.. +.|+++|+ ++++|+||||+|
T Consensus 18 ~~~~~~~~~~~~~~f~~~~~~~~~~~~~~i~~~~i~p~--~~~~~~~~~~~-------~~g~~~l~--k~avViLAGGlG 86 (505)
T 2oeg_A 18 KMRDAKVNEACIRTFIAQHVMVSKGETGSIPDSAIMPV--DSLDALDSLTI-------ECDNAVLQ--STVVLKLNGGLG 86 (505)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHTTCCCCCCGGGCBCC--CCCCBGGGCCC-------CCCHHHHH--TEEEEEEECCCC
T ss_pred HHHHcCCChHHHHHHHHHHHHHHhcCCCCcChhhcCCh--hhccChhhcch-------hHHHHHHh--cceEEEEcCCcc
Confidence 334567777888999999998885432 456789998 45566666542 37999998 999999999999
Q ss_pred cccCCCCCCccccccCCCCCccHHHHHHHHHHHHHHHHhhhcCCCCCCCCceeEEEEcCCCchHHHHHHHh-hcCCCCCC
Q 016922 131 TRLGSSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRKYFE-GHKYFGLE 209 (380)
Q Consensus 131 TRLg~~~PKg~~~i~l~s~ksllq~~~e~i~~l~~la~~~~~~~~~~~~~~ip~~IMTS~~t~e~t~~~f~-~~~~FGl~ 209 (380)
||||++.||+|+||+ ++|||||+++++|++++.. +++.|||+||||++||+.|++||+ ++++||++
T Consensus 87 TRLg~~~PK~llpV~--~gk~fLe~~ie~l~~~~~~-----------~g~~ip~viMtS~~t~e~t~~~f~~~~~~fGl~ 153 (505)
T 2oeg_A 87 TGMGLCDAKTLLEVK--DGKTFLDFTALQVQYLRQH-----------CSEHLRFMLMDSFNTSASTKSFLKARYPWLYQV 153 (505)
T ss_dssp GGGTCCSCGGGSEEE--TTEEHHHHHHHHHHHHHHH-----------TCTTCEEEEEECHHHHHHHHHHHHHHCHHHHTT
T ss_pred cccCCCCCCcccccC--CCCcHHHHHHHHHHHHHHh-----------cCCCcCEEEEeCCCCHHHHHHHHhhhhhccCCC
Confidence 999999999999998 8999999999999998876 356799999999999999999999 99999999
Q ss_pred CCceEEEEeCCeeeEecCC-ccc-ccCCCccccccCCCchhhHHHhhCChHHHHHHCCCeEEEEEcCCCcccccCCHHHH
Q 016922 210 SDQVTFFQQGTIPCVSKDG-RFI-METPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGVDNALVRVADPTFL 287 (380)
Q Consensus 210 ~~~V~~f~Q~~~P~~~~~g-ki~-l~~~~~i~~~P~GnGgi~~aL~~~g~l~~l~~~Gi~yi~v~~vDN~L~~~~Dp~~l 287 (380)
+++|++|+|+++||++.+| +++ ++++..++++|+||||+|++|+++|++++|.++|++|++|+|+||+ ++++||.|+
T Consensus 154 ~~~I~~f~Q~~~P~~~~~~~~~i~~~~~~~~e~~P~G~Gg~~~aL~~sGlL~~l~~~G~e~i~V~N~DNL-~~~~D~~ll 232 (505)
T 2oeg_A 154 FDSEVELMQNQVPKILQDTLEPAAWAENPAYEWAPPGHGDIYTALYGSGKLQELVEQGYRYMFVSNGDNL-GATIDKRVL 232 (505)
T ss_dssp CCCCCEEECCCEECEETTTCCBCCCTTCGGGGEECCCTTHHHHHHHHTTHHHHHHHTTCCEEEEECTTCT-TCCCCHHHH
T ss_pred ccceEEEEEcCEEeEecCCCceeecCCCCccccCcCCchHHHHHHHhcChHHHHHhcCCCEEEEEECCcc-ccccCHHHH
Confidence 9999999999999999988 655 6677779999999999999999999999999999999999999995 789999999
Q ss_pred HHHHHhCCceEEEEeecCCCCcccceEEEEc-----CCCC-------eEEEEecccChhhhhhhccCCCcceeccccccc
Q 016922 288 GYFIDKGVSAGAKVVRKAYPQEKVGVFVRRG-----KGGP-------LTVVEYSELDPSLASAINQETGRLRFCWSNVCL 355 (380)
Q Consensus 288 G~~~~~~~d~~~kvv~k~~p~e~vGvl~~~~-----~~g~-------~~vvEYsel~~~~~~~~~~~~g~l~f~~gNi~~ 355 (380)
|||.+++++++++|++|+.|++++|+++.+. .||+ ++++||+|+|++..++. +|.++|+++||||
T Consensus 233 g~~~~~~ad~~~~v~~k~~~d~~~Gvl~~~~~~~~~~dg~~nvEyn~~~llEyse~p~e~~~~~---~g~~~f~~~Ninn 309 (505)
T 2oeg_A 233 AYMEKEKIDFLMEVCRRTESDKKGGHLARQTVYVKGKDGQPDAEKRVLLLRESAQCPKADMESF---QDINKYSFFNTNN 309 (505)
T ss_dssp HHHHHHTCSEEEEEEECCTTCCSSEEEEEEEEEECCSSSCCCEEEEEEEEEEGGGSCGGGHHHH---HCTTTTCEEEEEE
T ss_pred HHHHhcCCcEEEEEEEecCCccceeEEEEecccccccCCccccccCceeEEEeccCChhhhhcc---cCccccCeeEEEE
Confidence 9999999999999999999999999999843 4799 99999999999987654 5789999999999
Q ss_pred hhccHHHHHHHHhcc
Q 016922 356 HMFTLDFLNQVANGL 370 (380)
Q Consensus 356 ~~f~l~fL~~~~~~~ 370 (380)
|||+++||+++++..
T Consensus 310 ~~~~l~~l~~~~~~~ 324 (505)
T 2oeg_A 310 LWIRLPVLLETMQEH 324 (505)
T ss_dssp EEEEHHHHHHHHHHT
T ss_pred EEEEHHHHHHHHhhh
Confidence 999999999998853
No 8
>2icy_A Probable UTP-glucose-1-phosphate uridylyltransferase 2; AT3G03250, UDP, putative UDP-glucose pyrophosphorylase; HET: UPG U5P; 1.64A {Arabidopsis thaliana} SCOP: b.81.1.4 c.68.1.5 PDB: 2icx_A* 1z90_A 2q4j_A
Probab=100.00 E-value=2.7e-57 Score=464.45 Aligned_cols=290 Identities=20% Similarity=0.227 Sum_probs=251.8
Q ss_pred hcCChHHHHHHHHHHHhcC--CCCCCccccCCCCCccccccCChHHHHHHHHHhhhhhcCCCEEEEEecCCCccccCCCC
Q 016922 60 ESLDLPRVDRIIRCSLRSQ--GLPVAAIEPVPERSVSTVEERTMDERERWWKMGLKAISDGKLAVLLLSGGQGTRLGSSD 137 (380)
Q Consensus 60 ~~id~~~~~~~~~~~~~~~--~~~~~~~~p~p~~~~~~~~~~~~~~~~~~~~~G~~~i~~gkvavvlLAGG~GTRLg~~~ 137 (380)
..+|++.+.++|++++... ..+++.++|+|++.+.++++.+.. ..+++.|++++ ||+++|+||||+|||||++.
T Consensus 22 ~~~~~~~f~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~~~--~~~~~~g~~~l--~k~~vviLAGGlGTRLg~~~ 97 (469)
T 2icy_A 22 SESEKSGFISLVSRYLSGEAQHIEWSKIQTPTDEIVVPYEKMTPV--SQDVAETKNLL--DKLVVLKLNGGLGTTMGCTG 97 (469)
T ss_dssp CHHHHHHHHHHHHHHC------CCGGGCBCCCTTTEEEGGGSCCC--CSCHHHHHHHH--TTEEEEEEECCBSGGGTCCS
T ss_pred chhhHHHHHHHHHHHHhccCCCCcccccccCCcccccChhhcccc--hhhHHHHHHhh--ccceEEEEcCCccccCCCCC
Confidence 4567788999999887543 247788999999888888776521 13456799998 69999999999999999999
Q ss_pred CCccccccCCCCCccHHHHHHHHHHHHHHHHhhhcCCCCCCCCceeEEEEcCCCchHHHHHHHhhcCCCCCCCCceEEEE
Q 016922 138 PKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRKYFEGHKYFGLESDQVTFFQ 217 (380)
Q Consensus 138 PKg~~~i~l~s~ksllq~~~e~i~~l~~la~~~~~~~~~~~~~~ip~~IMTS~~t~e~t~~~f~~~~~FGl~~~~V~~f~ 217 (380)
||+|+|| +++|||||+++++|++++.. +++.|||+||||.+||+.|++||++|++||+ +|++|+
T Consensus 98 PK~llpv--~~gkp~Le~~i~~l~~~~~~-----------~G~~ip~vimts~~t~e~t~~~f~~~~~fG~---~I~~f~ 161 (469)
T 2icy_A 98 PKSVIEV--RDGLTFLDLIVIQIENLNNK-----------YGCKVPLVLMNSFNTHDDTHKIVEKYTNSNV---DIHTFN 161 (469)
T ss_dssp BGGGSEE--ETTEEHHHHHHHHHHHHHHH-----------HSCCCCEEEEECTTTHHHHHHHHGGGTTSSS---CEEEEE
T ss_pred Ccccccc--CCCCCHHHHHHHHHHHHHHh-----------cCCCccEEEEeCCCCHHHHHHHHHhcccCCc---eEEEEE
Confidence 9999887 47999999999999997654 2567999999999999999999999999998 799999
Q ss_pred eCCeeeEecCCcccccCC---CccccccCCCchhhHHHhhCChHHHHHHCCCeEEEEEcCCCcccccCCHHHHHHHHHhC
Q 016922 218 QGTIPCVSKDGRFIMETP---YKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGVDNALVRVADPTFLGYFIDKG 294 (380)
Q Consensus 218 Q~~~P~~~~~gki~l~~~---~~i~~~P~GnGgi~~aL~~~g~l~~l~~~Gi~yi~v~~vDN~L~~~~Dp~~lG~~~~~~ 294 (380)
|+++||++.+|+++++++ ++++++|+||||+|++|+++|++++|.++|++|++|+|+||+ ++++||.|+|||.+++
T Consensus 162 Q~~~P~i~~e~~~~l~~~~~~~~~e~~P~GtGG~~~~L~~sGll~~l~~~G~e~~~V~n~DnL-~~~~d~~ll~~~~~~~ 240 (469)
T 2icy_A 162 QSKYPRVVADEFVPWPSKGKTDKEGWYPPGHGDVFPALMNSGKLDTFLSQGKEYVFVANSDNL-GAIVDLTILKHLIQNK 240 (469)
T ss_dssp CCCEECEETTTTEEGGGGTCCSGGGEECCCGGGHHHHHHHHSHHHHHHTTTCCEEEEEETTBT-TCCCCHHHHHHHHHHT
T ss_pred ecceeeEccccCccccCCCCCccccCCcCCchHHHHHHHhcCcHHHHHhcCCCEEEEEECCcC-CcccCHHHHHHHHHcC
Confidence 999999999999999876 789999999999999999999999999999999999999995 7899999999999999
Q ss_pred CceEEEEeecCCCCcccceEEEEcCCCCeEEEEecccChhhhhhhccCCCcceeccccccchhccHHHHHHHHhccccCC
Q 016922 295 VSAGAKVVRKAYPQEKVGVFVRRGKGGPLTVVEYSELDPSLASAINQETGRLRFCWSNVCLHMFTLDFLNQVANGLEKDS 374 (380)
Q Consensus 295 ~d~~~kvv~k~~p~e~vGvl~~~~~~g~~~vvEYsel~~~~~~~~~~~~g~l~f~~gNi~~~~f~l~fL~~~~~~~~~~~ 374 (380)
++++++|++|+.|++++|++|.. +|+.+++||+|+|++..++..+ ...|++.|||+|+|++++|+++.+......
T Consensus 241 a~~t~~v~~k~~~~~~~Gvl~~~--dg~~~vvE~~e~p~~~~~e~k~---~~~~~~~N~g~y~~~~~~L~~i~~~~~~~l 315 (469)
T 2icy_A 241 NEYCMEVTPKTLADVKGGTLISY--EGKVQLLEIAQVPDEHVNEFKS---IEKFKIFNTNNLWVNLKAIKKLVEADALKM 315 (469)
T ss_dssp CSEEEEEEECCTTCCSSCEEEEE--TTEEEEECGGGSCGGGHHHHHS---SSSCCEEEEEEEEEEHHHHHHHHHTTCCCC
T ss_pred CCeeEEEEEeccCCCceeEEEEE--CCEEEEEEEeccChhhhhhhcc---ccccceeeEEEEEEcHHHHHHHHhcccCCc
Confidence 99999999999999999999986 6899999999999976554221 245666799999999999999988644333
Q ss_pred C
Q 016922 375 V 375 (380)
Q Consensus 375 ~ 375 (380)
+
T Consensus 316 p 316 (469)
T 2icy_A 316 E 316 (469)
T ss_dssp C
T ss_pred h
Confidence 3
No 9
>2i5k_A UTP--glucose-1-phosphate uridylyltransferase; LEFT-handed beta-helix, SGC domain; 3.10A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.3e-55 Score=449.64 Aligned_cols=303 Identities=20% Similarity=0.261 Sum_probs=256.4
Q ss_pred hccccccCC--HHHHHHHHHHHhcCChHHHHHHHHHHHhc----CCCCCCccccCCCCCccccccCChHHHHHHHHHhhh
Q 016922 40 AFALWDELS--PDERDHLVKDIESLDLPRVDRIIRCSLRS----QGLPVAAIEPVPERSVSTVEERTMDERERWWKMGLK 113 (380)
Q Consensus 40 ll~~~~~l~--~~ek~~L~~ql~~id~~~~~~~~~~~~~~----~~~~~~~~~p~p~~~~~~~~~~~~~~~~~~~~~G~~ 113 (380)
|-++|+.+. ++||++|.+||+ .+.++|++++.. ...+|+.++|+|++.+.++++.. .|+ .|+.
T Consensus 20 l~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~~~~~-----~~~-~~~~ 88 (488)
T 2i5k_A 20 LNKLADSSKLDDAARAKFENELD-----SFFTLFRRYLVEKSSRTTLEWDKIKSPNPDEVVKYEIIS-----QQP-ENVS 88 (488)
T ss_dssp TTCCC--------CCSCTHHHHH-----HHHHHHHHHHHHHHSCCSCCGGGEECCCTTTEEEHHHHH-----SSC-CCST
T ss_pred HHHHHhhcCCCHHHHHHHHHHHH-----HHHHHHHHHHhcccccCCCcccccccCChhcccChhhcc-----cch-hhhh
Confidence 667888877 678888999887 467778877643 23577889999988777765432 111 2555
Q ss_pred hhcCCCEEEEEecCCCccccCCCCCCccccccCCCCCccHHHHHHHHHHHHHHHHhhhcCCCCCCCCceeEEEEcCCCch
Q 016922 114 AISDGKLAVLLLSGGQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTD 193 (380)
Q Consensus 114 ~i~~gkvavvlLAGG~GTRLg~~~PKg~~~i~l~s~ksllq~~~e~i~~l~~la~~~~~~~~~~~~~~ip~~IMTS~~t~ 193 (380)
+ .+|+|+|+||||+|||||++.||+|+|| ++||||||++++++++++.. +++.|||+||||++|+
T Consensus 89 ~--~~k~avViLAGG~GTRmgs~~PK~l~~V--~~gk~~Le~~i~~i~~l~~~-----------~G~~Ip~vImts~~t~ 153 (488)
T 2i5k_A 89 N--LSKLAVLKLNGGLGTSMGCVGPKSVIEV--REGNTFLDLSVRQIEYLNRQ-----------YDSDVPLLLMNSFNTD 153 (488)
T ss_dssp T--GGGEEEEEECCCBSGGGTCCSBSTTSCC--BTTBCHHHHHHHHHHHHHHH-----------HTCCCEEEEECCTTTH
T ss_pred h--cCCceEEEEcCCCcccCCCCCCcccccc--CCCCcHHHHHHHHHHHhHHh-----------cCCCccEEEEECCCCH
Confidence 5 4699999999999999999999999988 56999999999999987654 2467999999999999
Q ss_pred HHHHHHHhhcCCCCCCCCceEEEEeCCeeeEecCCcccccCCC---ccccccCCCchhhHHHhhCChHHHHHHCCCeEEE
Q 016922 194 DATRKYFEGHKYFGLESDQVTFFQQGTIPCVSKDGRFIMETPY---KVAKAPDGNGGVYSALKSSKLLEDMATRGIKYID 270 (380)
Q Consensus 194 e~t~~~f~~~~~FGl~~~~V~~f~Q~~~P~~~~~gki~l~~~~---~i~~~P~GnGgi~~aL~~~g~l~~l~~~Gi~yi~ 270 (380)
+.|++||+++++||+ +|++|.|+++||++.+|+++++.+. +++++|+||||+|.+|..+|++++|.++|++|++
T Consensus 154 e~t~~~~~~~~~fg~---~i~~f~Q~~~P~i~~d~~~~l~~~~~~~~~~~~P~GtGga~~~L~~sg~l~~l~~~g~~~v~ 230 (488)
T 2i5k_A 154 KDTEHLIKKYSANRI---RIRSFNQSRFPRVYKDSLLPVPTEYDSPLDAWYPPGHGDLFESLHVSGELDALIAQGREILF 230 (488)
T ss_dssp HHHHHHHGGGCSSSC---EEEEECCCCEECEETTTCCBSCSSSSSCTTSEECCCGGGHHHHHHHHTHHHHHHHTTCCEEE
T ss_pred HHHHHHHHhccccCc---eEEEEEeCccceEccccceeeccCCCCCceeeecCCCchhhhhhhhcCcHHHHHhcCCCEEE
Confidence 999999999999998 6999999999999999999998765 6999999999999999999999999999999999
Q ss_pred EEcCCCcccccCCHHHHHHHHHhCCceEEEEeecCCCCcccceEEEEcCCCCeEEEEecccChhhhhhhccCCCcceecc
Q 016922 271 CYGVDNALVRVADPTFLGYFIDKGVSAGAKVVRKAYPQEKVGVFVRRGKGGPLTVVEYSELDPSLASAINQETGRLRFCW 350 (380)
Q Consensus 271 v~~vDN~L~~~~Dp~~lG~~~~~~~d~~~kvv~k~~p~e~vGvl~~~~~~g~~~vvEYsel~~~~~~~~~~~~g~l~f~~ 350 (380)
|+|+|| |++++||.++|+|..++++++++++++++|++++|+|++. +|+.++|||+|++++.+++++ +.+.|+.
T Consensus 231 V~ngDn-L~~~~d~~~L~~~~~~~a~~t~~v~~~~~p~~~yG~Iv~~--dG~~~iVE~~e~~~e~~~~~~---~~~~~~~ 304 (488)
T 2i5k_A 231 VSNGDN-LGATVDLKILNHMIETGAEYIMELTDKTRADVKGGTLISY--DGQVRLLEVAQVPKEHIDEFK---NIRKFTN 304 (488)
T ss_dssp EECTTB-SSCCCCHHHHHHHHHSCCSEEEEEEECCGGGSSSCEEEEE--TTEEEEECGGGSCTTSHHHHT---CTTTCCE
T ss_pred EEeCCc-CCCcccHHHHHHHHhcCCcEEEEEEEecCCCCceeEEEEE--CCcEEEEEeccCCHHHHhhcc---cccccCE
Confidence 999999 7899999999999999999999999999999999999986 688999999999998766543 3466777
Q ss_pred ccccchhccHHHHHHHHhccccCCCCC
Q 016922 351 SNVCLHMFTLDFLNQVANGLEKDSVLL 377 (380)
Q Consensus 351 gNi~~~~f~l~fL~~~~~~~~~~~~~~ 377 (380)
.||+||+|++++|+++++......+++
T Consensus 305 ~Ntgi~~f~~~~L~~~l~~~~~~lp~~ 331 (488)
T 2i5k_A 305 FNTNNLWINLKAVKRLIESSNLEMEII 331 (488)
T ss_dssp EEEEEEEEEHHHHHHHHHTTCCCCCCB
T ss_pred EEEEEEEEeHHHHHHHHhhccCCCcce
Confidence 899999999999999998755555544
No 10
>3st8_A Bifunctional protein GLMU; acetyltransferase, pyrophosphorylase, rossmann fold, LEFT-handed-beta-helix, cell shape; HET: COA GP1 UD1; 1.98A {Mycobacterium tuberculosis} PDB: 3spt_A* 3foq_A 3dk5_A 3d8v_A 3d98_A* 3dj4_A 2qkx_A*
Probab=99.47 E-value=2.2e-13 Score=140.04 Aligned_cols=193 Identities=18% Similarity=0.208 Sum_probs=137.0
Q ss_pred CCEEEEEecCCCccccCCCCCCccccccCCCCCccHHHHHHHHHHHHHHHHhhhcCCCCCCCCceeEEEEcCCCchHHHH
Q 016922 118 GKLAVLLLSGGQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATR 197 (380)
Q Consensus 118 gkvavvlLAGG~GTRLg~~~PKg~~~i~l~s~ksllq~~~e~i~~l~~la~~~~~~~~~~~~~~ip~~IMTS~~t~e~t~ 197 (380)
+.+|+||||||+||||....||.|.|| .|||++++.++.+..+ + +.-+++..++..+.++
T Consensus 11 ~~~~vvILAaG~GtRm~~~~pK~l~pv---~gkp~i~~~l~~~~~~---------------g--~~~i~vv~~~~~~~i~ 70 (501)
T 3st8_A 11 GDTAVLVLAAGPGTRMRSDTPKVLHTL---AGRSMLSHVLHAIAKL---------------A--PQRLIVVLGHDHQRIA 70 (501)
T ss_dssp -CEEEEEEECSCCGGGCCSSCGGGCEE---TTEEHHHHHHHHHHHH---------------C--CSEEEEEECTTHHHHH
T ss_pred CCceEEEECCcCcccCCCCCCHHHeEE---CChhHHHHHHHHHHhC---------------C--CCEEEEEeCCCHHHHH
Confidence 679999999999999999999999999 8999999999977641 2 3334555568889999
Q ss_pred HHHhh-cCCCCCCCCceEEEEeCCeeeEecCCcccccCCCccccccCCCchhhHHHhhCChHHHHHHCCCeEEEEEcCCC
Q 016922 198 KYFEG-HKYFGLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGVDN 276 (380)
Q Consensus 198 ~~f~~-~~~FGl~~~~V~~f~Q~~~P~~~~~gki~l~~~~~i~~~P~GnGgi~~aL~~~g~l~~l~~~Gi~yi~v~~vDN 276 (380)
+||.+ .+.||. +|.+..| ..|.|+|+......+ .+...-...+++.+.|.
T Consensus 71 ~~~~~~~~~~~~---~i~~~~q---------------------~~~lGTa~Av~~a~~-----~l~~~~~~~~lvl~gd~ 121 (501)
T 3st8_A 71 PLVGELADTLGR---TIDVALQ---------------------DRPLGTGHAVLCGLS-----ALPDDYAGNVVVTSGDT 121 (501)
T ss_dssp HHHHHHHHHHTS---CCEEEEC---------------------SSCCCHHHHHHHHHT-----TSCTTCCSEEEEEETTC
T ss_pred HHHHHHHHhcCC---cEEEEEc---------------------CCCCCcHHHHHHHHH-----HhccccccceeeecCcc
Confidence 99986 345665 3555544 458999998765432 22223345778888888
Q ss_pred cccccCC-HHHHHHHHHhCCceEEEEeecCCCCcccceEEEEcCCCCe-EEEEecccChhhhhhhccCCCcceecccccc
Q 016922 277 ALVRVAD-PTFLGYFIDKGVSAGAKVVRKAYPQEKVGVFVRRGKGGPL-TVVEYSELDPSLASAINQETGRLRFCWSNVC 354 (380)
Q Consensus 277 ~L~~~~D-p~~lG~~~~~~~d~~~kvv~k~~p~e~vGvl~~~~~~g~~-~vvEYsel~~~~~~~~~~~~g~l~f~~gNi~ 354 (380)
+|....+ -.++-++...++++++.+.+..+| ..+|++.+. ++|+. .++|..+-+++... -+..|.+
T Consensus 122 ~l~~~~~~~~l~~~h~~~~~~~ti~~~~~~dp-~~yG~i~~~-~~g~v~~ivEk~~~~~~~~~----------i~~in~G 189 (501)
T 3st8_A 122 PLLDADTLADLIATHRAVSAAVTVLTTTLDDP-FGYGRILRT-QDHEVMAIVEQTDATPSQRE----------IREVNAG 189 (501)
T ss_dssp TTCCHHHHHHHHHHHHHTTCSEEEEEEECSCC-TTSCEEEEC-TTCCEEEEECGGGCCHHHHH----------CCEEEEE
T ss_pred eeecHHHHHHHHHHHhhccccceEeeeccCCc-hhccccccc-cceeEEeeccccCCChhhcc----------ceeeece
Confidence 7643221 125677788899999888888887 777999885 45642 45666555543221 1246889
Q ss_pred chhccHHHHHHHHhccc
Q 016922 355 LHMFTLDFLNQVANGLE 371 (380)
Q Consensus 355 ~~~f~l~fL~~~~~~~~ 371 (380)
+++|+.+.|+++.....
T Consensus 190 iy~f~~~~l~~~l~~l~ 206 (501)
T 3st8_A 190 VYAFDIAALRSALSRLS 206 (501)
T ss_dssp EEEEEHHHHHHHHTTCC
T ss_pred eeeecchhHHHhhhhhc
Confidence 99999999998876443
No 11
>3oam_A 3-deoxy-manno-octulosonate cytidylyltransferase; center for structural genomics of infectious diseases; 1.75A {Vibrio cholerae o1 biovar el tor} SCOP: c.68.1.13
Probab=99.24 E-value=4e-11 Score=112.52 Aligned_cols=187 Identities=17% Similarity=0.145 Sum_probs=120.8
Q ss_pred CEEEEEecCCCccccCCCCCCccccccCCCCCccHHHHHHHHHHHHHHHHhhhcCCCCCCCCceeEEEEcCCCchHHHHH
Q 016922 119 KLAVLLLSGGQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRK 198 (380)
Q Consensus 119 kvavvlLAGG~GTRLg~~~PKg~~~i~l~s~ksllq~~~e~i~~l~~la~~~~~~~~~~~~~~ip~~IMTS~~t~e~t~~ 198 (380)
++.+||||||.||||+ ||.+.|| .|||++++.++++.+ .++ -.++|.| + ++.+.+
T Consensus 2 ~~~aiIlA~G~stRlp---~K~L~~i---~GkPli~~~l~~l~~---------------~~~-~~ivVv~-~--~~~i~~ 56 (252)
T 3oam_A 2 SFTVVIPARYQSTRLP---GKPLADI---GGKPMIQWVYEQAMQ---------------AGA-DRVIIAT-D--DERVEQ 56 (252)
T ss_dssp CEEEEEECCCCCSSST---TGGGCEE---TTEEHHHHHHHHHHH---------------TTC-SEEEEEE-S--CHHHHH
T ss_pred ceEEEEecCcCCCCCC---CcceeeE---CCEEHHHHHHHHHHh---------------CCC-CeEEEEC-C--HHHHHH
Confidence 5889999999999995 7999999 899999999998764 121 1345555 2 689999
Q ss_pred HHhhcCCCCCCCCceEEEEeCCeeeEecCCcccccCCCccccccCCCchhhHHHhhCChHHHHHHCCCeEEEEEcCCCcc
Q 016922 199 YFEGHKYFGLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGVDNAL 278 (380)
Q Consensus 199 ~f~~~~~FGl~~~~V~~f~Q~~~P~~~~~gki~l~~~~~i~~~P~GnGgi~~aL~~~g~l~~l~~~Gi~yi~v~~vDN~L 278 (380)
++++ ||.+ +.+. ....|.|+|+++.++.. +...+.+++++.+.|++|
T Consensus 57 ~~~~---~g~~---v~~~---------------------~~~~~~Gt~~~~~~~~~------l~~~~~d~vlv~~gD~Pl 103 (252)
T 3oam_A 57 AVQA---FGGV---VCMT---------------------SPNHQSGTERLAEVVAK------MAIPADHIVVNVQGDEPL 103 (252)
T ss_dssp HHHH---TTCE---EEEC---------------------CTTCCSHHHHHHHHHHH------TTCCTTSEEEECCTTCTT
T ss_pred HHHH---cCCE---EEEc---------------------CCCCCCcHHHHHHHHHh------cCcCCCCEEEEEeCCeee
Confidence 9986 5542 2111 12358899997776532 211245789999999987
Q ss_pred cccCCH-HHHHHHHHhCCceEEEEeecCCCCccc-----ceEEEEcCCCCeEEEEecccCh-hhhhhhccCCC--cceec
Q 016922 279 VRVADP-TFLGYFIDKGVSAGAKVVRKAYPQEKV-----GVFVRRGKGGPLTVVEYSELDP-SLASAINQETG--RLRFC 349 (380)
Q Consensus 279 ~~~~Dp-~~lG~~~~~~~d~~~kvv~k~~p~e~v-----Gvl~~~~~~g~~~vvEYsel~~-~~~~~~~~~~g--~l~f~ 349 (380)
....+- .++..+.+.++++++-+++-.+| +.+ |.++.. .+| .++.+++-+- +.++....+.. ... +
T Consensus 104 i~~~~i~~l~~~~~~~~~~~~~~~~~v~~~-~~~~~p~~g~vv~d-~~g--~v~~fsr~~i~~~~~~~~~~~~~~~~~-~ 178 (252)
T 3oam_A 104 IPPAIIRQVADNLAACSAPMATLAVEIEDE-AEVFNPNAVKVITD-KSG--YALYFSRATIPWDRDNFAKADKAIVQP-L 178 (252)
T ss_dssp CCHHHHHHHHHHHHHSSCSEEEEEEEECCH-HHHTCTTSCEEEEC-TTS--BEEEEESSCSSCCHHHHHSSSCCCCSC-E
T ss_pred cCHHHHHHHHHHHHhcCCCEEEEeeecCCH-HHhhCCCceEEEEC-CCC--eEEEEeCCCCCCCCCcccccccccccc-c
Confidence 422211 24455555678888777776655 344 666664 456 5778777431 11111100000 011 2
Q ss_pred cccccchhccHHHHHHHHh
Q 016922 350 WSNVCLHMFTLDFLNQVAN 368 (380)
Q Consensus 350 ~gNi~~~~f~l~fL~~~~~ 368 (380)
..|++++.|+.++|+++.+
T Consensus 179 ~~n~GiY~~~~~~l~~~~~ 197 (252)
T 3oam_A 179 LRHIGIYAYRAGFINTYLD 197 (252)
T ss_dssp EEEEEEEEEETTHHHHHHH
T ss_pred eEEEEEEEcCHHHHHHHHc
Confidence 4799999999999998865
No 12
>4ecm_A Glucose-1-phosphate thymidylyltransferase; HET: DAU; 2.30A {Bacillus anthracis} PDB: 3hl3_A*
Probab=99.20 E-value=1.3e-10 Score=109.79 Aligned_cols=182 Identities=13% Similarity=0.166 Sum_probs=123.4
Q ss_pred CCCEEEEEecCCCccccCC---CCCCccccccCCCCCccHHHHHHHHHHHHHHHHhhhcCCCCCCCCcee-EEEEcCCCc
Q 016922 117 DGKLAVLLLSGGQGTRLGS---SDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIH-WYIMTSPFT 192 (380)
Q Consensus 117 ~gkvavvlLAGG~GTRLg~---~~PKg~~~i~l~s~ksllq~~~e~i~~l~~la~~~~~~~~~~~~~~ip-~~IMTS~~t 192 (380)
+.++.+||||||.||||+. ..||.++|+ .|+|++++.++++.+ .+ +. ++|.|....
T Consensus 22 ~~~m~aiIlAaG~g~Rl~~lt~~~pK~ll~i---~g~pli~~~l~~l~~---------------~g--~~~iivv~~~~~ 81 (269)
T 4ecm_A 22 SNAMKGIILAGGTGSRLYPITKVTNKHLLPV---GRYPMIYHAVYKLKQ---------------CD--ITDIMIITGKEH 81 (269)
T ss_dssp --CEEEEEECCSCCGGGTTTTSSSCGGGSEE---TTEEHHHHHHHHHHH---------------TT--CCEEEEEECTTT
T ss_pred ccCcEEEEECCCCccccccccCCCCceecEE---CCEEHHHHHHHHHHH---------------CC--CCEEEEECChhh
Confidence 3578999999999999986 889999999 699999999998764 12 33 345554444
Q ss_pred hHHHHHHHhhcCCCCCCCCceEEEEeCCeeeEecCCcccccCCCccccccCCCchhhHHHhhCChHHHHHHCCCeEEEEE
Q 016922 193 DDATRKYFEGHKYFGLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCY 272 (380)
Q Consensus 193 ~e~t~~~f~~~~~FGl~~~~V~~f~Q~~~P~~~~~gki~l~~~~~i~~~P~GnGgi~~aL~~~g~l~~l~~~Gi~yi~v~ 272 (380)
.+.+.+++++...||++ +.+.. ...+.|.|+...+. ++.+. -+++.|.
T Consensus 82 ~~~~~~~~~~~~~~~~~---i~~~~---------------------~~~~~G~~~al~~a-----~~~~~---~~~~lv~ 129 (269)
T 4ecm_A 82 MGDVVSFLGSGQEFGVS---FTYRV---------------------QDKAGGIAQALGLC-----EDFVG---NDRMVVI 129 (269)
T ss_dssp HHHHHHHHTTSGGGTCE---EEEEE---------------------CSSCCCHHHHHHTT-----HHHHT---TSEEEEE
T ss_pred HHHHHHHHhhccccCce---EEEee---------------------CCccCcHHHHHHHH-----HHhcC---CCcEEEE
Confidence 57889999876667663 32221 12366777665533 23231 4688999
Q ss_pred cCCCcccccCCHHHHHHHHHhCCceEEEEeecCCCCcccceEEEEcCCCCeEEEEecccChhhhhhhccCCCcceecccc
Q 016922 273 GVDNALVRVADPTFLGYFIDKGVSAGAKVVRKAYPQEKVGVFVRRGKGGPLTVVEYSELDPSLASAINQETGRLRFCWSN 352 (380)
Q Consensus 273 ~vDN~L~~~~Dp~~lG~~~~~~~d~~~kvv~k~~p~e~vGvl~~~~~~g~~~vvEYsel~~~~~~~~~~~~g~l~f~~gN 352 (380)
+.|.++. ..--.++..+.+.++++++-+.+..+| .+.|++... +| .|+++.|-|.. + ..+..|
T Consensus 130 ~~D~~~~-~~l~~l~~~~~~~~~~~~~~~~~~~~~-~~~g~v~~d--~g--~v~~~~ekp~~------~-----~~~~~~ 192 (269)
T 4ecm_A 130 LGDNIFS-DDIRPYVEEFTNQKEGAKVLLQSVDDP-ERFGVANIQ--NR--KIIEIEEKPKE------P-----KSSYAV 192 (269)
T ss_dssp ETTEEES-SCSHHHHHHHHTSSSSEEEEEEECSCG-GGSEEEEEE--TT--EEEEEEESCSS------C-----SCSEEE
T ss_pred eCCccCc-cCHHHHHHHHHhcCCCeEEEEEECCCC-CCceEEEEc--CC--EEEEEEECCCC------C-----CCcEEE
Confidence 9999874 444557777777888888777766655 677888764 45 56777655421 0 012468
Q ss_pred ccchhccHHHHHHHH
Q 016922 353 VCLHMFTLDFLNQVA 367 (380)
Q Consensus 353 i~~~~f~l~fL~~~~ 367 (380)
+++++|+.++++.+.
T Consensus 193 ~Giy~~~~~~l~~l~ 207 (269)
T 4ecm_A 193 TGIYLYDSKVFSYIK 207 (269)
T ss_dssp EEEEEECTTHHHHHT
T ss_pred EEEEEECHHHHHhhh
Confidence 888899988875543
No 13
>1fxo_A Glucose-1-phosphate thymidylyltransferase; rhamnose, nucleotidyltransferase, pyrophosphorylase, allostery; HET: TMP; 1.66A {Pseudomonas aeruginosa} SCOP: c.68.1.6 PDB: 1fzw_A 1g0r_A* 1g1l_A* 1g23_A* 1g2v_A* 1g3l_A* 1h5r_A* 1h5s_C* 1h5t_A* 1h5s_D* 1h5s_A* 1h5r_B* 1h5s_B* 1h5t_B* 1iim_A* 1iin_A* 3pkp_A* 3pkq_A* 1mp5_A* 1mp3_A* ...
Probab=99.13 E-value=2.5e-10 Score=109.70 Aligned_cols=183 Identities=16% Similarity=0.220 Sum_probs=119.3
Q ss_pred CEEEEEecCCCccccC---CCCCCccccccCCCCCccHHHHHHHHHHHHHHHHhhhcCCCCCCCCceeEEEEcCCCchHH
Q 016922 119 KLAVLLLSGGQGTRLG---SSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDA 195 (380)
Q Consensus 119 kvavvlLAGG~GTRLg---~~~PKg~~~i~l~s~ksllq~~~e~i~~l~~la~~~~~~~~~~~~~~ip~~IMTS~~t~e~ 195 (380)
++.+||||||.||||+ .+.||.+.|| .|||++++.++.+.. .++. .++|.|+++..+.
T Consensus 2 ~~~aIILAgG~gtRl~plT~~~pK~llpi---~gkpli~~~l~~l~~---------------~gi~-~I~vv~~~~~~~~ 62 (293)
T 1fxo_A 2 KRKGIILAGGSGTRLHPATLAISKQLLPV---YDKPMIYYPLSTLML---------------AGIR-EILIISTPQDTPR 62 (293)
T ss_dssp CEEEEEECCCCCTTTTTHHHHSCGGGSEE---TTEETTHHHHHHHHH---------------TTCC-EEEEEECTTTHHH
T ss_pred CceEEEECCCCCCcCccccCCCCceeCeE---CCEeHHHHHHHHHHH---------------CCCC-EEEEEeccccHHH
Confidence 4678999999999998 4679999999 799999999988763 1311 3455676777888
Q ss_pred HHHHHhhcCCCCCCCCceEEEEeCCeeeEecCCcccccCCCccccccCCCchhhHHHhhCChHHHHHHCCCeEEEEEcCC
Q 016922 196 TRKYFEGHKYFGLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGVD 275 (380)
Q Consensus 196 t~~~f~~~~~FGl~~~~V~~f~Q~~~P~~~~~gki~l~~~~~i~~~P~GnGgi~~aL~~~g~l~~l~~~Gi~yi~v~~vD 275 (380)
+++++.+...||++ +.+.. ...|.|.++.+.... +.+ . + +.+.+...|
T Consensus 63 i~~~l~~g~~~g~~---i~~~~---------------------~~~~~G~~~al~~a~-----~~i-~-~-~~~~lv~gD 110 (293)
T 1fxo_A 63 FQQLLGDGSNWGLD---LQYAV---------------------QPSPDGLAQAFLIGE-----SFI-G-N-DLSALVLGD 110 (293)
T ss_dssp HHHHHTTSGGGTCE---EEEEE---------------------CSSCCCGGGHHHHTH-----HHH-T-T-SEEEEEETT
T ss_pred HHHHHhcccccCce---EEEee---------------------CCCCCCHHHHHHHHH-----HHh-C-C-CCEEEEECC
Confidence 99999876556753 32321 124788888766432 222 1 2 445555699
Q ss_pred CcccccCCHHHHHHHHHhCCceEEEEeecCCCCcccceEEEEcCCCCeEEEEecccChhhhhhhccCCCcceeccccccc
Q 016922 276 NALVRVADPTFLGYFIDKGVSAGAKVVRKAYPQEKVGVFVRRGKGGPLTVVEYSELDPSLASAINQETGRLRFCWSNVCL 355 (380)
Q Consensus 276 N~L~~~~Dp~~lG~~~~~~~d~~~kvv~k~~p~e~vGvl~~~~~~g~~~vvEYsel~~~~~~~~~~~~g~l~f~~gNi~~ 355 (380)
|++....-..++..+.+.+.++.+-+.+..+| ++.|++... .+| .++.+.|-|.. + +. +..|++.
T Consensus 111 ~~~~~~~l~~~l~~~~~~~~~~~v~~~~v~dp-~~~g~v~~d-~~g--~v~~~~ekp~~------~---~s--~~~~~Gi 175 (293)
T 1fxo_A 111 NLYYGHDFHELLGSASQRQTGASVFAYHVLDP-ERYGVVEFD-QGG--KAISLEEKPLE------P---KS--NYAVTGL 175 (293)
T ss_dssp EEEECTTHHHHHHHHHTCCSSEEEEEEECSCG-GGSEEEEEC-TTS--CEEEEEESCSS------C---SS--SEEEEEE
T ss_pred hhccCccHHHHHHHHHhcCCCcEEEEEECCCc-ccCcEEEEC-CCC--cEEEEEECCCC------C---CC--CeEEEEE
Confidence 99754322335555655566666666666666 678988764 356 45666554321 1 11 2367888
Q ss_pred hhccHHHHHHHH
Q 016922 356 HMFTLDFLNQVA 367 (380)
Q Consensus 356 ~~f~l~fL~~~~ 367 (380)
++|+.++++.+.
T Consensus 176 y~~~~~~l~~~~ 187 (293)
T 1fxo_A 176 YFYDQQVVDIAR 187 (293)
T ss_dssp EEECTTHHHHHH
T ss_pred EEEcHHHHHHHH
Confidence 888888877654
No 14
>1mc3_A Glucose-1-phosphate thymidylyltransferase; glucose-1-phosphate thymidylytransferase, RFFH; HET: TTP; 2.60A {Escherichia coli} SCOP: c.68.1.6
Probab=99.10 E-value=4.5e-10 Score=108.26 Aligned_cols=182 Identities=17% Similarity=0.208 Sum_probs=120.6
Q ss_pred EEEEEecCCCccccC---CCCCCccccccCCCCCccHHHHHHHHHHHHHHHHhhhcCCCCCCCCceeEEEEcCCCchHHH
Q 016922 120 LAVLLLSGGQGTRLG---SSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDAT 196 (380)
Q Consensus 120 vavvlLAGG~GTRLg---~~~PKg~~~i~l~s~ksllq~~~e~i~~l~~la~~~~~~~~~~~~~~ip~~IMTS~~t~e~t 196 (380)
+.+||||||.||||+ .+.||.++|+ .|||++++.++.+.. .++. .++|.|+.+..+.+
T Consensus 4 m~aIILAgG~GtRl~plT~~~pK~llpi---~gkpli~~~l~~l~~---------------~gi~-~I~vv~~~~~~~~i 64 (296)
T 1mc3_A 4 MKGIILAGGSGTRLHPITRGVSKQLLPI---YDKPMIYYPLSVLML---------------AGIR-EILIITTPEDKGYF 64 (296)
T ss_dssp CEEEEECCCCCGGGHHHHTTSCGGGSEE---TTEETTHHHHHHHHH---------------TTCC-EEEEEECTTTHHHH
T ss_pred cEEEEECCCCCCcCCcccCCCCceeeEE---CCeeHHHHHHHHHHh---------------CCCC-cEEEEechhHHHHH
Confidence 578999999999998 6789999999 799999999987763 1211 34556666778889
Q ss_pred HHHHhhcCCCCCCCCceEEEEeCCeeeEecCCcccccCCCccccccCCCchhhHHHhhCChHHHHHHCCCeEEEEEcCCC
Q 016922 197 RKYFEGHKYFGLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGVDN 276 (380)
Q Consensus 197 ~~~f~~~~~FGl~~~~V~~f~Q~~~P~~~~~gki~l~~~~~i~~~P~GnGgi~~aL~~~g~l~~l~~~Gi~yi~v~~vDN 276 (380)
++++.+...||++ +.+..| ..|.|.++.+.... +.+. .-.++.+ ..||
T Consensus 65 ~~~l~~g~~~g~~---i~~~~~---------------------~~~~G~~~al~~a~-----~~i~--~~~~~lv-~gD~ 112 (296)
T 1mc3_A 65 QRLLGDGSEFGIQ---LEYAEQ---------------------PSPDGLAQAFIIGE-----TFLN--GEPSCLV-LGDN 112 (296)
T ss_dssp HHHHTTSGGGTCE---EEEEEC---------------------SSCCCSTHHHHHTH-----HHHT--TSCEEEE-ETTE
T ss_pred HHHHhcccccCce---EEEecc---------------------CCCCCHHHHHHHHH-----HHhC--CCCEEEE-ECCc
Confidence 9999876556763 333221 24788887665432 2221 2234445 5999
Q ss_pred cccccCCHHHHHHHHHhCCceEEEEeecCCCCcccceEEEEcCCCCeEEEEecccChhhhhhhccCCCcceeccccccch
Q 016922 277 ALVRVADPTFLGYFIDKGVSAGAKVVRKAYPQEKVGVFVRRGKGGPLTVVEYSELDPSLASAINQETGRLRFCWSNVCLH 356 (380)
Q Consensus 277 ~L~~~~Dp~~lG~~~~~~~d~~~kvv~k~~p~e~vGvl~~~~~~g~~~vvEYsel~~~~~~~~~~~~g~l~f~~gNi~~~ 356 (380)
++....-..++-.+.+.+.++.+-+.+..+| +++|++... .+| .|+.+.|-|.. + .. +..|++++
T Consensus 113 ~~~~~~l~~~l~~~~~~~~~~~v~~~~v~dp-~~yg~v~~d-~~g--~v~~~~ekp~~------~---~s--~~~~~Giy 177 (296)
T 1mc3_A 113 IFFGQGFSPKLRHVAARTEGATVFGYQVMDP-ERFGVVEFD-DNF--RAISLEEKPKQ------P---KS--NWAVTGLY 177 (296)
T ss_dssp EEECSSCHHHHHHHTTCCSSEEEEEEECSCC-SSSBBCEEE-TTE--EEEECCBSCSS------C---SC--SEEEEEEE
T ss_pred cccccCHHHHHHHHHHcCCCCEEEEEECCCc-ccCCEEEEC-CCC--cEEEEEECCCC------C---CC--CEEEEEEE
Confidence 9754444556666655566666656666666 578988764 345 57777665421 1 11 23688888
Q ss_pred hccHHHHHHHH
Q 016922 357 MFTLDFLNQVA 367 (380)
Q Consensus 357 ~f~l~fL~~~~ 367 (380)
+|+.++++.+.
T Consensus 178 ~~~~~~l~~~~ 188 (296)
T 1mc3_A 178 FYDSKVVEYAK 188 (296)
T ss_dssp ECCTHHHHHHH
T ss_pred EEcHHHHHHHH
Confidence 99998887653
No 15
>1lvw_A Glucose-1-phosphate thymidylyltransferase; protein nucleotide complex, nucleotide binding fold; HET: TYD; 1.70A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.68.1.6
Probab=99.08 E-value=8.3e-10 Score=106.32 Aligned_cols=183 Identities=16% Similarity=0.149 Sum_probs=117.5
Q ss_pred CEEEEEecCCCccccC---CCCCCccccccCCCCCccHHHHHHHHHHHHHHHHhhhcCCCCCCCCceeEEEEcCCCchHH
Q 016922 119 KLAVLLLSGGQGTRLG---SSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDA 195 (380)
Q Consensus 119 kvavvlLAGG~GTRLg---~~~PKg~~~i~l~s~ksllq~~~e~i~~l~~la~~~~~~~~~~~~~~ip~~IMTS~~t~e~ 195 (380)
.+.+||||||.||||+ .+.||.++|| .|||++++.++.+.. .++. .++|.|+.+..+.
T Consensus 3 ~m~aIILAgG~GtRl~plT~~~pK~llpi---~gkpli~~~l~~l~~---------------~gi~-~Iivv~~~~~~~~ 63 (295)
T 1lvw_A 3 HMKGIVLAGGSGTRLYPITRAVSKQLLPI---YDKPMIYYPLSVLML---------------AGIR-DILIISTPRDLPL 63 (295)
T ss_dssp SCEEEEECCCCCSTTTTTTTSSCGGGSEE---TTEETTHHHHHHHHH---------------TTCC-EEEEEECTTTHHH
T ss_pred ceEEEEECCCCCCccccccCCCCceecEE---CCeeHHHHHHHHHHH---------------CCCC-eEEEEeccchHHH
Confidence 3678999999999998 5679999999 799999999988763 1211 3455666677888
Q ss_pred HHHHHhhcCCCCCCCCceEEEEeCCeeeEecCCcccccCCCccccccCCCchhhHHHhhCChHHHHHHCCCeEEEEEcCC
Q 016922 196 TRKYFEGHKYFGLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGVD 275 (380)
Q Consensus 196 t~~~f~~~~~FGl~~~~V~~f~Q~~~P~~~~~gki~l~~~~~i~~~P~GnGgi~~aL~~~g~l~~l~~~Gi~yi~v~~vD 275 (380)
+++++.+...||++ +.+.. ...|.|.++.+.... +.+ . .-.++.+ ..|
T Consensus 64 i~~~l~~g~~~g~~---i~~~~---------------------~~~~~G~~~al~~a~-----~~i-~-~~~~~lv-~gD 111 (295)
T 1lvw_A 64 YRDLLGDGSQFGVR---FSYRV---------------------QEEPRGIADAFIVGK-----DFI-G-DSKVALV-LGD 111 (295)
T ss_dssp HHHHHTTSGGGTSE---EEEEE---------------------CSSCCCGGGHHHHTH-----HHH-T-TSCEEEE-ETT
T ss_pred HHHHhhhccccCce---EEEee---------------------CCCCCChHHHHHHHH-----HHh-C-CCcEEEE-ECC
Confidence 99999876556763 33322 124788887765432 222 1 2345555 499
Q ss_pred CcccccCCHHHHHHHHHhCCceEEEEeecCCCCcccceEEEEcCCCCeEEEEecccChhhhhhhccCCCcceeccccccc
Q 016922 276 NALVRVADPTFLGYFIDKGVSAGAKVVRKAYPQEKVGVFVRRGKGGPLTVVEYSELDPSLASAINQETGRLRFCWSNVCL 355 (380)
Q Consensus 276 N~L~~~~Dp~~lG~~~~~~~d~~~kvv~k~~p~e~vGvl~~~~~~g~~~vvEYsel~~~~~~~~~~~~g~l~f~~gNi~~ 355 (380)
|++....-..++-.+.+.+.++.+-+.+..+| ++.|++... .+| .|+.+.|-|.. + +. +..|+++
T Consensus 112 ~~~~~~~l~~~l~~~~~~~~~~~v~~~~v~dp-~~~g~v~~d-~~g--~v~~~~ekp~~------~---~s--~~~~~Gi 176 (295)
T 1lvw_A 112 NVFYGHRFSEILRRAASLEDGAVIFGYYVRDP-RPFGVVEFD-SEG--RVISIEEKPSR------P---KS--NYVVPGL 176 (295)
T ss_dssp CCEECTTHHHHHHHHHTCCSSEEEEEEECSCC-TTSEEEEEC-TTS--BEEEEEESCSS------C---SC--SEECCSE
T ss_pred ccccCcCHHHHHHHHHHcCCCcEEEEEECCCc-ccCCEEEEC-CCC--cEEEEEECCCC------C---CC--CEEEEEe
Confidence 99754322345555555556666656666666 578887653 355 46666554421 1 11 1357788
Q ss_pred hhccHHHHHHHH
Q 016922 356 HMFTLDFLNQVA 367 (380)
Q Consensus 356 ~~f~l~fL~~~~ 367 (380)
++|+.++++.+.
T Consensus 177 y~f~~~~l~~~~ 188 (295)
T 1lvw_A 177 YFYDNQVVEIAR 188 (295)
T ss_dssp EEECTTHHHHHH
T ss_pred EEEcHHHHHHHH
Confidence 888888776653
No 16
>3brk_X Glucose-1-phosphate adenylyltransferase; ADP-glucose pyrophosphorylase, allostery, kinetics, structure-function relationships; 2.10A {Agrobacterium tumefaciens}
Probab=99.01 E-value=7.6e-09 Score=103.56 Aligned_cols=198 Identities=13% Similarity=0.237 Sum_probs=122.5
Q ss_pred CEEEEEecCCCccccC---CCCCCccccccCCCCC-ccHHHHHHHHHHHHHHHHhhhcCCCCCCCCceeEEEEcCCCchH
Q 016922 119 KLAVLLLSGGQGTRLG---SSDPKGCVNIGLPSGK-SLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDD 194 (380)
Q Consensus 119 kvavvlLAGG~GTRLg---~~~PKg~~~i~l~s~k-sllq~~~e~i~~l~~la~~~~~~~~~~~~~~ip~~IMTS~~t~e 194 (380)
++.+||||||.||||+ .+.||.++|+ .|+ +++++.++++.+ .+ +.-++....+.++
T Consensus 12 ~~~avILAaG~gtRl~plT~~~pK~llpi---~gk~pli~~~l~~l~~---------------~g--i~~i~vv~~~~~~ 71 (420)
T 3brk_X 12 DAMAYVLAGGRGSRLKELTDRRAKPAVYF---GGKARIIDFALSNALN---------------SG--IRRIGVATQYKAH 71 (420)
T ss_dssp GEEEEEEECCCCGGGGGGGSSSCGGGSEE---TTTEETHHHHHHHHHH---------------TT--CCEEEEEECTTCH
T ss_pred ceEEEEEcCCCCCccchhhcCCccccccc---CCCCcHHHHHHHHHHh---------------CC--CCeEEEEeCCChH
Confidence 5889999999999998 7789999999 799 999999998764 12 3334444456678
Q ss_pred HHHHHHhhcCCCCCCC----CceEEEEeCCeeeEecCCcccccCCCcccccc---CCCchhhHHHhhCChHHHHHHCCCe
Q 016922 195 ATRKYFEGHKYFGLES----DQVTFFQQGTIPCVSKDGRFIMETPYKVAKAP---DGNGGVYSALKSSKLLEDMATRGIK 267 (380)
Q Consensus 195 ~t~~~f~~~~~FGl~~----~~V~~f~Q~~~P~~~~~gki~l~~~~~i~~~P---~GnGgi~~aL~~~g~l~~l~~~Gi~ 267 (380)
.+.+++++. ||++. ..+.+. . +..-...| .|+++..... ++.+...+.+
T Consensus 72 ~i~~~~~~~--~~~~~~~~~~~v~i~--------~---------~~~~~~~~~~~~Gt~~al~~a-----~~~l~~~~~~ 127 (420)
T 3brk_X 72 SLIRHLQRG--WDFFRPERNESFDIL--------P---------ASQRVSETQWYEGTADAVYQN-----IDIIEPYAPE 127 (420)
T ss_dssp HHHHHHHHH--SCCCCGGGTCEEEEE--------C---------CC-------CCCCHHHHHHTT-----HHHHHHHCCS
T ss_pred HHHHHHhhh--hccccccccCCEEEe--------C---------ccccccCCccccCCHHHHHHH-----HHHHHhcCCC
Confidence 999999864 55532 112211 0 00000123 6776665532 3444433457
Q ss_pred EEEEEcCCCcccccCCHHHHHHHHHhCCceEEEEeecC-CCCcccceEEEEcCCCCeEEEEecccChhhhhhhccCCCcc
Q 016922 268 YIDCYGVDNALVRVADPTFLGYFIDKGVSAGAKVVRKA-YPQEKVGVFVRRGKGGPLTVVEYSELDPSLASAINQETGRL 346 (380)
Q Consensus 268 yi~v~~vDN~L~~~~Dp~~lG~~~~~~~d~~~kvv~k~-~p~e~vGvl~~~~~~g~~~vvEYsel~~~~~~~~~~~~g~l 346 (380)
++++.+.|.+. ...--.++..+.+.++++++-+.+.. ......|++... .+| .|+++.|-|........ . .
T Consensus 128 ~~lv~~~D~~~-~~~l~~l~~~~~~~~~~~tl~~~~~~~~~~~~~g~v~~d-~~g--~v~~~~ekp~~~~~~~~--~--~ 199 (420)
T 3brk_X 128 YMVILAGDHIY-KMDYEYMLQQHVDSGADVTIGCLEVPRMEATGFGVMHVN-EKD--EIIDFIEKPADPPGIPG--N--E 199 (420)
T ss_dssp EEEEEESSCEE-CBCTHHHHHHHHHTTCSEEEEEEEEETTGGGGSEEEEEC-TTS--BEEEEEESCSSCCCBTT--B--T
T ss_pred EEEEecccEEE-chHHHHHHHHHHHcCCeEEEEEeecCccccCcccEEEEC-CCC--cEEEeEeCCCccccccc--c--c
Confidence 89999999964 33334577778788888876655431 223567887653 345 46666664432110000 0 0
Q ss_pred eeccccccchhccHHHHHHHHh
Q 016922 347 RFCWSNVCLHMFTLDFLNQVAN 368 (380)
Q Consensus 347 ~f~~gNi~~~~f~l~fL~~~~~ 368 (380)
.....|+++++|+.++|.+.++
T Consensus 200 ~~~~~~~Giy~~~~~~l~~~l~ 221 (420)
T 3brk_X 200 GFALASMGIYVFHTKFLMEAVR 221 (420)
T ss_dssp TEEEEEEEEEEEEHHHHHHHHT
T ss_pred cceEEeeeeEEEeHHHHHHHHH
Confidence 1124689999999998876654
No 17
>3juk_A UDP-glucose pyrophosphorylase (GALU); transfer; HET: UPG; 2.30A {Helicobacter pylori} PDB: 3juj_A*
Probab=99.01 E-value=1.2e-09 Score=103.40 Aligned_cols=187 Identities=15% Similarity=0.111 Sum_probs=114.8
Q ss_pred EEEEEecCCCccccCC---CCCCccccccCCCCCccHHHHHHHHHHHHHHHHhhhcCCCCCCCCceeEEEEcCCCchHHH
Q 016922 120 LAVLLLSGGQGTRLGS---SDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDAT 196 (380)
Q Consensus 120 vavvlLAGG~GTRLg~---~~PKg~~~i~l~s~ksllq~~~e~i~~l~~la~~~~~~~~~~~~~~ip~~IMTS~~t~e~t 196 (380)
+.+||||||.||||+. ..||.+.|| .|||++++.++++.. .+ +.-+++...+..+.+
T Consensus 3 ~~avIlAaG~gtRl~plt~~~pK~ll~i---~gkpli~~~l~~l~~---------------~g--i~~i~vv~~~~~~~i 62 (281)
T 3juk_A 3 KKCLFPAAGYGTRFLPITKTIPKEMLPI---VDKPLIQYAVEEAME---------------AG--CEVMAIVTGRNKRSL 62 (281)
T ss_dssp CEEEEECCSCCGGGTTGGGTSCGGGCBS---SSSBHHHHHHHHHHH---------------HT--CCEEEEEECTTHHHH
T ss_pred eEEEEECCcCCcccCccccCCCcccceE---CCEEHHHHHHHHHHh---------------CC--CCEEEEEecCCHHHH
Confidence 5689999999999986 889999999 699999999998764 12 334555556778999
Q ss_pred HHHHhhcCCCCCCC------------------CceEEEEeCCeeeEecCCcccccCCCccccccCCCchhhHHHhhCChH
Q 016922 197 RKYFEGHKYFGLES------------------DQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLL 258 (380)
Q Consensus 197 ~~~f~~~~~FGl~~------------------~~V~~f~Q~~~P~~~~~gki~l~~~~~i~~~P~GnGgi~~aL~~~g~l 258 (380)
.++|.+...+.-.. .+|.+. ....|.|+|+......
T Consensus 63 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~---------------------~~~~~~Gt~~al~~a~----- 116 (281)
T 3juk_A 63 EDYFDTSYEIEHQIQGTNKENALKSIRNIIEKCCFSYV---------------------RQKQMKGLGHAILTGE----- 116 (281)
T ss_dssp HHHTSCCC--------CCHHHHHHHHHHHHHHCEEEEE---------------------ECSSCCCHHHHHHHTH-----
T ss_pred HHHHhcchhhhhhhhcccchhhhhhhhccccCccEEEE---------------------ecCCCCCcHHHHHHHH-----
Confidence 99997642211000 011111 1234788877665432
Q ss_pred HHHHHCCCeEEEEEcCCCcccccC-----CHHHHHHHHHhCCce-EEEEeecCCCCcccceEEEEcC--CCCeEEEEecc
Q 016922 259 EDMATRGIKYIDCYGVDNALVRVA-----DPTFLGYFIDKGVSA-GAKVVRKAYPQEKVGVFVRRGK--GGPLTVVEYSE 330 (380)
Q Consensus 259 ~~l~~~Gi~yi~v~~vDN~L~~~~-----Dp~~lG~~~~~~~d~-~~kvv~k~~p~e~vGvl~~~~~--~g~~~vvEYse 330 (380)
+.+ +-++++|.+.|.++ ... --.++.++.+.++.+ ++..++... ..+.|++... . +|...|.++.|
T Consensus 117 ~~l---~~~~~lv~~~D~~~-~~~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~~-~~~~g~v~~~-~~~~g~~~v~~~~E 190 (281)
T 3juk_A 117 ALI---GNEPFAVILADDLC-ISHDHPSVLKQMTSLYQKYQCSIVAIEEVALEE-VSKYGVIRGE-WLEEGVYEIKDMVE 190 (281)
T ss_dssp HHH---CSSCEEEECTTEEE-ECTTSCCHHHHHHHHHHHHCSCEEEEEECCTTT-GGGSEEEEEE-EEETTEEEEEEEEE
T ss_pred HHc---CCCCEEEEeCCeec-cCccchHHHHHHHHHHHHcCCCEEEEEEechhh-cccCCEEEec-cCCCCceEEeEEEE
Confidence 223 23678889999954 333 233666666666622 222233233 3677887664 2 35346777776
Q ss_pred cChhhhhhhccCCCcceeccccccchhccHHHHHHHH
Q 016922 331 LDPSLASAINQETGRLRFCWSNVCLHMFTLDFLNQVA 367 (380)
Q Consensus 331 l~~~~~~~~~~~~g~l~f~~gNi~~~~f~l~fL~~~~ 367 (380)
-|... .... +..|+++++|+.++++.+.
T Consensus 191 kp~~~-------~~~~--~~~~~GiYi~~~~~l~~l~ 218 (281)
T 3juk_A 191 KPNQE-------DAPS--NLAVIGRYILTPDIFEILS 218 (281)
T ss_dssp SCCTT-------TCSC--SEEEEEEEEECTTHHHHHH
T ss_pred CcCCC-------CCCc--ceeEEEEEEECHHHHHHHH
Confidence 65411 0011 2368888999988886554
No 18
>3k8d_A 3-deoxy-manno-octulosonate cytidylyltransferase; KDSB synthetase KDO complex, lipopolysaccharide biosynthesis magnesium, nucleotidyltransferase; HET: KDO CTP; 1.90A {Escherichia coli} SCOP: c.68.1.13 PDB: 3k8e_C 1vh1_A 3jtj_A*
Probab=98.97 E-value=2.8e-09 Score=101.22 Aligned_cols=183 Identities=19% Similarity=0.183 Sum_probs=117.3
Q ss_pred CEEEEEecCCCccccCCCCCCccccccCCCCCccHHHHHHHHHHHHHHHHhhhcCCCCCCCCceeEEEEcCCCchHHHHH
Q 016922 119 KLAVLLLSGGQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRK 198 (380)
Q Consensus 119 kvavvlLAGG~GTRLg~~~PKg~~~i~l~s~ksllq~~~e~i~~l~~la~~~~~~~~~~~~~~ip~~IMTS~~t~e~t~~ 198 (380)
++.+||||||.||||+ +|.+.|+ .|||++++.++++.+ .++ -..+|.| + ++.+.+
T Consensus 18 ~~~aIIlA~G~stRlp---~K~L~~i---~GkPmi~~~l~~l~~---------------~~i-~~IvV~t-~--~~~i~~ 72 (264)
T 3k8d_A 18 SFVVIIPARYASTRLP---GKPLVDI---NGKPMIVHVLERARE---------------SGA-ERIIVAT-D--HEDVAR 72 (264)
T ss_dssp CCEEEEECCSCCSSST---TGGGCEE---TTEEHHHHHHHHHHH---------------TTC-SEEEEEE-S--CHHHHH
T ss_pred ceEEEEEcCCCCCCCC---CcceeeE---CCeEHHHHHHHHHHh---------------CCC-CEEEEEC-C--HHHHHH
Confidence 5899999999999994 4999999 899999999998764 121 1345555 2 578888
Q ss_pred HHhhcCCCCCCCCceEEEEeCCeeeEecCCcccccCCCccccccCCCchhhHHHhhCChHHHHHHCCCeEEEEEcCCCcc
Q 016922 199 YFEGHKYFGLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGVDNAL 278 (380)
Q Consensus 199 ~f~~~~~FGl~~~~V~~f~Q~~~P~~~~~gki~l~~~~~i~~~P~GnGgi~~aL~~~g~l~~l~~~Gi~yi~v~~vDN~L 278 (380)
++++ ||.+ +.+- ....|.|.|++..++. .+...+.+++.+++.|++|
T Consensus 73 ~~~~---~g~~---v~~~---------------------~~~~~~Gt~~i~~~~~------~l~~~~~d~vlv~~gD~Pl 119 (264)
T 3k8d_A 73 AVEA---AGGE---VCMT---------------------RADHQSGTERLAEVVE------KCAFSDDTVIVNVQGDEPM 119 (264)
T ss_dssp HHHH---TTCE---EEEC---------------------CTTCCSHHHHHHHHHH------HHTCCTTCEEEEECTTCTT
T ss_pred HHHH---cCCE---EEEe---------------------cCCCCCCHHHHHHHHH------HhccCCCCEEEEEcCCccc
Confidence 8875 5542 1110 1235788888766552 3322356899999999998
Q ss_pred cccCCHHHH----HHHHHhCCceEEEEeecCCCCc-----ccceEEEEcCCCCeEEEEecccCh-hhhhhhc--c-CCCc
Q 016922 279 VRVADPTFL----GYFIDKGVSAGAKVVRKAYPQE-----KVGVFVRRGKGGPLTVVEYSELDP-SLASAIN--Q-ETGR 345 (380)
Q Consensus 279 ~~~~Dp~~l----G~~~~~~~d~~~kvv~k~~p~e-----~vGvl~~~~~~g~~~vvEYsel~~-~~~~~~~--~-~~g~ 345 (380)
. +|..+ ..+...++++++-+++-.++.+ .++++ . +.+| .++.+++-+. ..++... . .+.
T Consensus 120 i---~~~~i~~li~~~~~~~~~~~~~~~~v~d~~~~~~p~~vkVv-~-d~~g--~~l~fsr~~ip~~r~~~~~~~~~~~- 191 (264)
T 3k8d_A 120 I---PATIIRQVADNLAQRQVGMATLAVPIHNAEEAFNPNAVKVV-L-DAEG--YALYFSRATIPWDRDRFAEGLETVG- 191 (264)
T ss_dssp C---CHHHHHHHHHHHHTSSCSEEEEEEECCSHHHHTCTTSCEEE-E-CTTS--BEEEEESSCCSCCHHHHHHCSSCCC-
T ss_pred C---CHHHHHHHHHHHhhcCCCEEEEEEEcCCHHHccCCCceEEE-E-CCCC--eEEEEecCCCCCCCccccccccccC-
Confidence 4 45544 3444567888877776554322 23443 2 3466 5788887542 1211100 0 011
Q ss_pred ceeccccccchhccHHHHHHHHh
Q 016922 346 LRFCWSNVCLHMFTLDFLNQVAN 368 (380)
Q Consensus 346 l~f~~gNi~~~~f~l~fL~~~~~ 368 (380)
..| ..|++++.|+.++|++..+
T Consensus 192 ~~~-~~~~GiY~y~~~~l~~~~~ 213 (264)
T 3k8d_A 192 DNF-LRHLGIYGYRAGFIRRYVN 213 (264)
T ss_dssp SCC-EEECSEEEEEHHHHHHHHH
T ss_pred Ccc-eEEEEEEEECHHHHHHHHh
Confidence 112 4699999999999999865
No 19
>3tqd_A 3-deoxy-manno-octulosonate cytidylyltransferase; cell envelope; 1.80A {Coxiella burnetii} SCOP: c.68.1.0
Probab=98.96 E-value=4.6e-09 Score=99.33 Aligned_cols=184 Identities=18% Similarity=0.235 Sum_probs=110.7
Q ss_pred CEEEEEecCCCccccCCCCCCccccccCCCCCccHHHHHHHHHHHHHHHHhhhcCCCCCCCCceeEEEEcCCCchHHHHH
Q 016922 119 KLAVLLLSGGQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRK 198 (380)
Q Consensus 119 kvavvlLAGG~GTRLg~~~PKg~~~i~l~s~ksllq~~~e~i~~l~~la~~~~~~~~~~~~~~ip~~IMTS~~t~e~t~~ 198 (380)
++.+||||||.||||+ ||.+.|| .|||++++.++++.+ .++. .++|-|. ++.+.+
T Consensus 9 ~~~aIIlA~G~stRl~---~K~L~~i---~GkPli~~~l~~l~~---------------~~i~-~VvVvt~---~~~i~~ 63 (256)
T 3tqd_A 9 EFRVIIPARFDSTRLP---GKALVDI---AGKPMIQHVYESAIK---------------SGAE-EVVIATD---DKRIRQ 63 (256)
T ss_dssp CCEEEEECCCC---CT---TGGGCEE---TTEEHHHHHHHHHHH---------------TTCS-EEEEEES---CHHHHH
T ss_pred CceEEEEcCCCCCCCC---CCCeeeE---CCchHHHHHHHHHHh---------------CCCC-EEEEECC---HHHHHH
Confidence 6899999999999997 8999999 899999999998764 1211 2345553 588889
Q ss_pred HHhhcCCCCCCCCceEEEEeCCeeeEecCCcccccCCCccccccCCCchhhHHHhhCChHHHHHHCCCeEEEEEcCCCcc
Q 016922 199 YFEGHKYFGLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGVDNAL 278 (380)
Q Consensus 199 ~f~~~~~FGl~~~~V~~f~Q~~~P~~~~~gki~l~~~~~i~~~P~GnGgi~~aL~~~g~l~~l~~~Gi~yi~v~~vDN~L 278 (380)
++++ ||.+ +.+ .....|.|.+++..++. .+...+.+++.+++.|+++
T Consensus 64 ~~~~---~g~~---v~~---------------------~~~~~~~Gt~~i~~a~~------~l~~~~~d~vlv~~gD~Pl 110 (256)
T 3tqd_A 64 VAED---FGAV---VCM---------------------TSSDHQSGTERIAEAAV------ALGFEDDEIIVCLQGDEPL 110 (256)
T ss_dssp HHHH---TTCE---EEE---------------------CCTTCCSHHHHHHHHHH------HTTCCTTCEEEEECTTCCC
T ss_pred HHHH---cCCe---EEE---------------------eCCCCCCcHHHHHHHHH------HhCcCCCCEEEEEeCCccc
Confidence 8875 5642 111 01234778888766653 2211356899999999997
Q ss_pred cccCCHHHHH----HHHHh-CCceEEEEeecCCCC-----cccceEEEEcCCCCeEEEEecccChhh-hhhhc--cC-CC
Q 016922 279 VRVADPTFLG----YFIDK-GVSAGAKVVRKAYPQ-----EKVGVFVRRGKGGPLTVVEYSELDPSL-ASAIN--QE-TG 344 (380)
Q Consensus 279 ~~~~Dp~~lG----~~~~~-~~d~~~kvv~k~~p~-----e~vGvl~~~~~~g~~~vvEYsel~~~~-~~~~~--~~-~g 344 (380)
. +|..+. .+.+. ++++++-+++-.++. ..++|++ +.+| .++.+++-+.-. ++... .. ..
T Consensus 111 i---~~~~i~~li~~~~~~~~~~~a~l~~~v~~~~~~~~p~~vkvv~--d~~g--~~l~fsr~pip~~r~~~~~~~~~~~ 183 (256)
T 3tqd_A 111 I---PPDAIRKLAEDLDEHDNVKVASLCTPITEVDELFNPHSTKVVL--NRRN--YALYFSHAPIPWGRDTFSDKENLQL 183 (256)
T ss_dssp C---CHHHHHHHHHHHHHCC--CEEEEEEECCCHHHHTCTTSCEEEE--CTTS--BEEEEESSCSSCCTTTTTCGGGCCC
T ss_pred C---CHHHHHHHHHHHHhCCCCCEEEEeeEcCCHHHhhCCCccEEEE--CCCC--EEeEEecCCCCCCCccccccccccc
Confidence 3 455443 33332 556666665543221 2345543 2466 477787754311 10000 00 00
Q ss_pred cceeccccccchhccHHHHHHHHh
Q 016922 345 RLRFCWSNVCLHMFTLDFLNQVAN 368 (380)
Q Consensus 345 ~l~f~~gNi~~~~f~l~fL~~~~~ 368 (380)
...| ..||+++.|+.++|++..+
T Consensus 184 ~~~~-~~~~GiY~y~~~~l~~~~~ 206 (256)
T 3tqd_A 184 NGSH-YRHVGIYAYRVGFLEEYLS 206 (256)
T ss_dssp SSCC-EEEEEEEEEEHHHHHHHHH
T ss_pred CCcc-eEEEEEEEcCHHHHHHHHh
Confidence 0122 4799999999999999865
No 20
>3pnn_A Conserved domain protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; HET: MSE GOL; 1.90A {Porphyromonas gingivalis}
Probab=98.95 E-value=2.5e-09 Score=103.05 Aligned_cols=207 Identities=14% Similarity=0.115 Sum_probs=120.9
Q ss_pred CEEEEEecCCCccccCCCCCCccccccCCCCCccHHHHHHHHHHHHHHHHhhhcCCCCCCCCceeEEEEcCCCc-hHHHH
Q 016922 119 KLAVLLLSGGQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFT-DDATR 197 (380)
Q Consensus 119 kvavvlLAGG~GTRLg~~~PKg~~~i~l~s~ksllq~~~e~i~~l~~la~~~~~~~~~~~~~~ip~~IMTS~~t-~e~t~ 197 (380)
++.+||||||.||||+. ||.+.|++ +.|++++++.++++.. .+ +.-+++...+. .+.++
T Consensus 5 ~~~~vIlAaG~g~R~~~--~K~l~~ig-~~g~pli~~~l~~~~~---------------~~--~~~i~vv~~~~~~~~~~ 64 (303)
T 3pnn_A 5 KPTLFVLAAGMGSRYGS--LKQLDGIG-PGGDTIMDYSVYDAIR---------------AG--FGRLVFVIRHSFEKEFR 64 (303)
T ss_dssp CCEEEEECTTCBCTTSS--BCCCCCCS-TTSCCHHHHHHHHHHH---------------HT--CCEEEEEECGGGHHHHH
T ss_pred ceEEEEECCCCcccCCC--CceEeEcC-CCCeeHHHHHHHHHHH---------------CC--CCeEEEEcCchHHHHHH
Confidence 57899999999999986 89999885 2589999999998753 12 33334444455 58999
Q ss_pred HHHhhcCCCCCCCCceEEEEeCCeeeEecCCcccccCCCccccccCCCchhhHHHhhCChHHHHHHCCCeEEEEEcCCCc
Q 016922 198 KYFEGHKYFGLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGVDNA 277 (380)
Q Consensus 198 ~~f~~~~~FGl~~~~V~~f~Q~~~P~~~~~gki~l~~~~~i~~~P~GnGgi~~aL~~~g~l~~l~~~Gi~yi~v~~vDN~ 277 (380)
++|.+...++. +|.+..|+..- +.....+.. ....|.|+|+......+. + . +.+.|.+.|++
T Consensus 65 ~~~~~~~~~~~---~i~~~~~~~~~-~~~~~~~~~-----~~~~~~Gt~~al~~a~~~--i----~---~~~lV~~gD~l 126 (303)
T 3pnn_A 65 EKILTKYEGRI---PVELVFQELDR-LPEGFSCPE-----GREKPWGTNHAVLMGRDA--I----R---EPFAVINADDF 126 (303)
T ss_dssp HHTHHHHTTTS---CEEEEECCTTC-CCTTCCCCT-----TCCSCCCHHHHHHTTTTT--C----C---SCEEEEESSCB
T ss_pred HHHHHHhccCC---cEEEEeccccc-ccccccccc-----cccccCCcHHHHHHHHHh--c----C---CCEEEEECCee
Confidence 99986444443 46666665311 111111111 113588998887765443 2 1 34567789996
Q ss_pred ccccC-CHHHHHHHHH---hCCceEEEEeecCCCCccc-----ceEEEEcCCCCeEEEEecccChhhhhh----hccCCC
Q 016922 278 LVRVA-DPTFLGYFID---KGVSAGAKVVRKAYPQEKV-----GVFVRRGKGGPLTVVEYSELDPSLASA----INQETG 344 (380)
Q Consensus 278 L~~~~-Dp~~lG~~~~---~~~d~~~kvv~k~~p~e~v-----Gvl~~~~~~g~~~vvEYsel~~~~~~~----~~~~~g 344 (380)
+ ... --.++-++.+ .++++++-+.+..+|-... |++. .+.+| .|+++.|-|+..... ..+..|
T Consensus 127 ~-~~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~g~~~~G~v~-~d~~g--~v~~i~Ekp~~~~~~~~~~~~~~~g 202 (303)
T 3pnn_A 127 Y-GRNGFEVLARKLMTLEGKQGEYCMVGYRVGNTLSESGGVSRGVCQ-VDEKH--LLTGVVERTGIERTDGTISFRDETG 202 (303)
T ss_dssp C-CHHHHHHHHHHHHTTTTCSSEEEEEEEEGGGSCBTTBCEEEEEEE-ECTTS--BEEEEEEEEEEEEETTEEEEECTTS
T ss_pred c-CHHHHHHHHHHHHHhccccCceEEEEEECCCccCccCceeeeeEe-eCCCC--cEEEEEECCCCcccccccccccccc
Confidence 4 221 1226666654 5677877666665552344 4444 43456 455555554321000 000112
Q ss_pred cc----eeccccccchhccHHHHHHHH
Q 016922 345 RL----RFCWSNVCLHMFTLDFLNQVA 367 (380)
Q Consensus 345 ~l----~f~~gNi~~~~f~l~fL~~~~ 367 (380)
.. .-+..|+++++|+.++++.+.
T Consensus 203 ~~~~~~~~~~i~~GiY~f~~~~~~~l~ 229 (303)
T 3pnn_A 203 KICTLAEDAPVSMNMWGFTPDYFDYSE 229 (303)
T ss_dssp CEEEECTTCEEEEEEEEECTHHHHHHH
T ss_pred ccccCCCCCEEEEEEEEECHHHHHHHH
Confidence 10 113468899999998887664
No 21
>2qh5_A PMI, ALGA, mannose-6-phosphate isomerase; structural genomics, PSI, protein structure initi nysgrc; 2.30A {Helicobacter pylori}
Probab=98.90 E-value=1.3e-08 Score=97.98 Aligned_cols=186 Identities=18% Similarity=0.172 Sum_probs=106.7
Q ss_pred CEEEEEecCCCccccC---C-CCCCccccccCCCCCccHHHHHHHHHHHHHHHHhhhcCCCCCCCCceeEEEEcCCCchH
Q 016922 119 KLAVLLLSGGQGTRLG---S-SDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDD 194 (380)
Q Consensus 119 kvavvlLAGG~GTRLg---~-~~PKg~~~i~l~s~ksllq~~~e~i~~l~~la~~~~~~~~~~~~~~ip~~IMTS~~t~e 194 (380)
++.+||||||.||||+ . +.||.++|++ .++|++++.++++.. . . -.++|.|.....+
T Consensus 4 ~~~avIlAgG~gtRl~plt~~~~pK~ll~i~--gg~pli~~~l~~l~~---------------~-~-~~i~vv~~~~~~~ 64 (308)
T 2qh5_A 4 KIKNILLSGGSGKRLWPLSRSLYPKQFLKLF--DHKSLFELSFKRNAS---------------L-V-DETLIVCNEKHYF 64 (308)
T ss_dssp CEEEEEECC-------------CCGGGCTTB--TTBCHHHHHHHHHHT---------------T-C-SEEEEEEEGGGHH
T ss_pred ccEEEEEcCCCCccCCccCCCCCCCEEEECC--CCCCHHHHHHHHHHc---------------c-C-CCEEEEEChhHHH
Confidence 5788999999999996 2 5799999882 389999999998763 1 1 1346666654457
Q ss_pred HHHHHHhhcCCCCCCCCceEEEEeCCeeeEecCCcccccCCCccccccCCCchhhHHHhhCChHHHHHHCCCeEEEEEcC
Q 016922 195 ATRKYFEGHKYFGLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGV 274 (380)
Q Consensus 195 ~t~~~f~~~~~FGl~~~~V~~f~Q~~~P~~~~~gki~l~~~~~i~~~P~GnGgi~~aL~~~g~l~~l~~~Gi~yi~v~~v 274 (380)
.+.+++++. ||++ ++.+.. ...|.|+|+...+.... + ..-++++|.+.
T Consensus 65 ~i~~~~~~~--~~~~--~~~~i~---------------------~~~~~gt~~al~~a~~~-----l--~~~~~~lv~~~ 112 (308)
T 2qh5_A 65 LALEEIKNE--IKNK--SVGFLL---------------------ESLSKNTANAIALSALM-----S--DKEDLLIVTPS 112 (308)
T ss_dssp HHHHHTTTT--CSSC--EEEEEE---------------------ESSCCCHHHHHHHHHHT-----S--CTTSEEEEEES
T ss_pred HHHHHHHHh--hCCC--ccEEEe---------------------CCCCCChHHHHHHHHHH-----h--CCCCeEEEEcC
Confidence 888998763 5542 233322 23367888886644321 1 12347889999
Q ss_pred CCcccccC-CHHHHHH---HHHhCCceEEEEeecCCCCcccceEEEEcCCCCeEEEEecccChhh-hhhhccCCCcceec
Q 016922 275 DNALVRVA-DPTFLGY---FIDKGVSAGAKVVRKAYPQEKVGVFVRRGKGGPLTVVEYSELDPSL-ASAINQETGRLRFC 349 (380)
Q Consensus 275 DN~L~~~~-Dp~~lG~---~~~~~~d~~~kvv~k~~p~e~vGvl~~~~~~g~~~vvEYsel~~~~-~~~~~~~~g~l~f~ 349 (380)
|.++.... --.++.. +.+.++++++.+.+. .+....|++... .+| .|+++.|-|... +.... ..|. |
T Consensus 113 D~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~-~~~~~~g~i~~d-~~~--~V~~~~Ekp~~~~~~~~~-~~g~--~- 184 (308)
T 2qh5_A 113 DHLIKDLQAYENAIKKAIDLAQKGFLVTFGVSID-KPNTEFGYIESP-NGL--DVKRFIEKPSLDKAIEFQ-KSGG--F- 184 (308)
T ss_dssp SCBCCCHHHHHHHHHHHHHHHHTTCEEEEEEECS-SCCTTSEEEECS-SSS--BCSEEEESCCHHHHHHHH-HHCC--E-
T ss_pred CccccCHHHHHHHHHHHHHHHhcCCEEEEEEecC-CCCCCceEEEEC-CCC--EEEEEEECCChHHHHHHh-hcCC--e-
Confidence 99863211 1224444 445677776666554 445678988642 234 466666655432 11110 0121 2
Q ss_pred cccccchhccHHHH
Q 016922 350 WSNVCLHMFTLDFL 363 (380)
Q Consensus 350 ~gNi~~~~f~l~fL 363 (380)
..|+++++|+.+++
T Consensus 185 ~~n~Giy~~~~~~l 198 (308)
T 2qh5_A 185 YFNSGMFVFQAGVF 198 (308)
T ss_dssp EEEEEEEEEEHHHH
T ss_pred EEEeEEEEEEHHHH
Confidence 36899999998775
No 22
>1yp2_A Glucose-1-phosphate adenylyltransferase small subunit; ADP-glucose synthase, ADP-glucose pyrophosphorylase, agpase B; HET: PMB; 2.11A {Solanum tuberosum} SCOP: b.81.1.4 c.68.1.6 PDB: 1yp3_A* 1yp4_A*
Probab=98.89 E-value=2.1e-08 Score=101.08 Aligned_cols=212 Identities=13% Similarity=0.200 Sum_probs=116.9
Q ss_pred CEEEEEecCCCccccC---CCCCCccccccCCCCC-ccHHHHHHHHHHHHHHHHhhhcCCCCCCCCceeEEEEcCCCchH
Q 016922 119 KLAVLLLSGGQGTRLG---SSDPKGCVNIGLPSGK-SLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDD 194 (380)
Q Consensus 119 kvavvlLAGG~GTRLg---~~~PKg~~~i~l~s~k-sllq~~~e~i~~l~~la~~~~~~~~~~~~~~ip~~IMTS~~t~e 194 (380)
++.+|+||||.||||+ .+.||.|+|+ .|+ +++++.++++.+ .+ +.-+++...+.++
T Consensus 20 ~~~avILAaG~gtRl~plT~~~pK~llpi---~g~~pli~~~l~~l~~---------------~g--~~~i~vv~~~~~~ 79 (451)
T 1yp2_A 20 SVLGIILGGGAGTRLYPLTKKRAKPAVPL---GANYRLIDIPVSNCLN---------------SN--ISKIYVLTQFNSA 79 (451)
T ss_dssp HEEEEEC------CCTTTTTTSCGGGCEE---TTTEETTHHHHHHHHH---------------TT--CCEEEEEESCCCH
T ss_pred ceEEEEECCCCCCcccchhcCCcceeeEE---CCcceeHHHHHHHHHH---------------CC--CCEEEEEeccCHH
Confidence 4788999999999998 6689999999 798 999999998764 12 3334444456778
Q ss_pred HHHHHHhhcCCCCCCCCceEEEEeCCeeeEecCCcccccCCCccccccCCCchhhHHHhhCChHHHHHHCCCeEEEEEcC
Q 016922 195 ATRKYFEGHKYFGLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGV 274 (380)
Q Consensus 195 ~t~~~f~~~~~FGl~~~~V~~f~Q~~~P~~~~~gki~l~~~~~i~~~P~GnGgi~~aL~~~g~l~~l~~~Gi~yi~v~~v 274 (380)
.+.++|.+. +|.+.. .++.++.+..+..+ ..+ .-...+.|+|+..... ++.+...+-++++|.+.
T Consensus 80 ~i~~~~~~~--~~~~~~--~~~~~~~v~i~~~~-----~~~-~~~~~~~Gt~~al~~a-----~~~~~~~~~~~~lv~~~ 144 (451)
T 1yp2_A 80 SLNRHLSRA--YASNMG--GYKNEGFVEVLAAQ-----QSP-ENPDWFQGTADAVRQY-----LWLFEEHTVLEYLILAG 144 (451)
T ss_dssp HHHHHHHHH--CC----------CCEEEEEESC-----SST-TSCCCCCSHHHHHHHT-----HHHHTTSCCSEEEEECS
T ss_pred HHHHHHhhh--hhcccc--cccccCcEEEeccc-----ccc-cccccccCcHHHHHHH-----HHHHHhcCCCeEEEecC
Confidence 899998752 221100 01111112221100 000 0012256887765543 23343334678999999
Q ss_pred CCcccccCCHHHHHHHHHhCCceEEEEeecC-CCCcccceEEEEcCCCCeEEEEecccChhh-hhhh--ccC-CC-----
Q 016922 275 DNALVRVADPTFLGYFIDKGVSAGAKVVRKA-YPQEKVGVFVRRGKGGPLTVVEYSELDPSL-ASAI--NQE-TG----- 344 (380)
Q Consensus 275 DN~L~~~~Dp~~lG~~~~~~~d~~~kvv~k~-~p~e~vGvl~~~~~~g~~~vvEYsel~~~~-~~~~--~~~-~g----- 344 (380)
|.+. ...-..++.++.+.++++++-+.+.. .+.+..|++... .+| +|+++.|-|... +... +.. -+
T Consensus 145 D~~~-~~~l~~l~~~~~~~~~~~tl~~~~~~~~~~~~~g~v~~d-~~~--~v~~~~ekp~~~~~~~~~~~~~~l~~~~~~ 220 (451)
T 1yp2_A 145 DHLY-RMDYEKFIQAHRETDADITVAALPMDEKRATAFGLMKID-EEG--RIIEFAEKPQGEQLQAMKVDTTILGLDDKR 220 (451)
T ss_dssp CEEC-CCCHHHHHHHHHHTTCSEEEEEEEECHHHHTTSEEEEEC-TTS--BEEEEEESCCHHHHHHTCCCGGGGSCCHHH
T ss_pred cEEE-cCCHHHHHHHHHHcCCcEEEEEEEcChhhcccCCEEEEC-CCC--CEEEEEECCCchhhcccccccccccccccc
Confidence 9964 33333577778788888876544432 123567887653 345 577887766532 1100 000 00
Q ss_pred -cceeccccccchhccHHHHHHHHhc
Q 016922 345 -RLRFCWSNVCLHMFTLDFLNQVANG 369 (380)
Q Consensus 345 -~l~f~~gNi~~~~f~l~fL~~~~~~ 369 (380)
.......|+++++|+.++|.+.++.
T Consensus 221 ~~~~~~~~~~Giy~~~~~~l~~~l~~ 246 (451)
T 1yp2_A 221 AKEMPFIASMGIYVISKDVMLNLLRD 246 (451)
T ss_dssp HHHCCEEEEEEEEEEEHHHHHHHHHT
T ss_pred ccCCcceEEeeEEEEcHHHHHHHHHh
Confidence 0011246899999999988766543
No 23
>1hm9_A GLMU, UDP-N-acetylglucosamine-1-phosphate uridyltransfe; acetyltransferase, bifunctional, drug design; HET: ACO UD1; 1.75A {Streptococcus pneumoniae} SCOP: b.81.1.4 c.68.1.5 PDB: 1hm8_A* 1hm0_A* 4ac3_A* 4aaw_A* 1g97_A* 1g95_A*
Probab=98.82 E-value=4.5e-08 Score=98.78 Aligned_cols=183 Identities=15% Similarity=0.125 Sum_probs=114.6
Q ss_pred EEEEEecCCCccccCCCCCCccccccCCCCCccHHHHHHHHHHHHHHHHhhhcCCCCCCCCceeEEEEcCCCchHHHHHH
Q 016922 120 LAVLLLSGGQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRKY 199 (380)
Q Consensus 120 vavvlLAGG~GTRLg~~~PKg~~~i~l~s~ksllq~~~e~i~~l~~la~~~~~~~~~~~~~~ip~~IMTS~~t~e~t~~~ 199 (380)
-.+|+||||.||||+.+.||.++|+ .|||++++.++++.+ .+ +.-++....+..+.+.++
T Consensus 12 ~~~vIlAaG~g~R~~~~~pK~l~~i---~gkpli~~~l~~l~~---------------~g--~~~iivv~~~~~~~i~~~ 71 (468)
T 1hm9_A 12 NFAIILAAGKGTRMKSDLPKVLHKV---AGISMLEHVFRSVGA---------------IQ--PEKTVTVVGHKAELVEEV 71 (468)
T ss_dssp EEEEEECCCCCGGGCCSSCGGGSEE---TTEEHHHHHHHHHHT---------------TC--CSEEEEEECTTHHHHHHS
T ss_pred CcEEEEcCCCCccCCCCCCcEeeEE---CCccHHHHHHHHHHh---------------cC--CCCEEEEECCCHHHHHHH
Confidence 4578999999999998889999999 799999999988763 12 333444445556777777
Q ss_pred HhhcCCCCCCCCceEEEEeCCeeeEecCCcccccCCCccccccCCCchhhHHHhhCChHHHHHHCCCeEEEEEcCCCccc
Q 016922 200 FEGHKYFGLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGVDNALV 279 (380)
Q Consensus 200 f~~~~~FGl~~~~V~~f~Q~~~P~~~~~gki~l~~~~~i~~~P~GnGgi~~aL~~~g~l~~l~~~Gi~yi~v~~vDN~L~ 279 (380)
+.+ .+.+.. ...+.|.++.+.+. ++.+. ..-+++++.+.|.++.
T Consensus 72 ~~~---------~i~~v~---------------------~~~~~G~~~sl~~a-----~~~~~-~~~~~vlv~~~D~P~i 115 (468)
T 1hm9_A 72 LAG---------QTEFVT---------------------QSEQLGTGHAVMMT-----EPILE-GLSGHTLVIAGDTPLI 115 (468)
T ss_dssp SSS---------SSEEEE---------------------CSSCCCHHHHHHTT-----HHHHT-TCCSEEEEEETTCTTC
T ss_pred hCC---------CcEEEe---------------------CCccCChHHHHHHH-----HHHhc-cCCCeEEEEeCCcccc
Confidence 654 122221 11256766655432 23332 2247899999999864
Q ss_pred ccCCH-HHHHHHHHhCCceEEEEeecCCCCcccceEEEEcCCCCeEEEEecccChhhhhhhccCCCcceeccccccchhc
Q 016922 280 RVADP-TFLGYFIDKGVSAGAKVVRKAYPQEKVGVFVRRGKGGPLTVVEYSELDPSLASAINQETGRLRFCWSNVCLHMF 358 (380)
Q Consensus 280 ~~~Dp-~~lG~~~~~~~d~~~kvv~k~~p~e~vGvl~~~~~~g~~~vvEYsel~~~~~~~~~~~~g~l~f~~gNi~~~~f 358 (380)
...+- .++-.+.+.++++++-+.+..+| ...|.+... .+| .|+++.|-+...... ......|+++++|
T Consensus 116 ~~~~i~~l~~~~~~~~~~~~i~~~~~~~~-~~~g~v~~d-~~g--~v~~~~ek~~~~~~~-------~~~~~~~~Giy~f 184 (468)
T 1hm9_A 116 TGESLKNLIDFHINHKNVATILTAETDNP-FGYGRIVRN-DNA--EVLRIVEQKDATDFE-------KQIKEINTGTYVF 184 (468)
T ss_dssp CHHHHHHHHHHHHHTTCSEEEEEEECSCC-TTSCEEEEC-TTC--CEEEEECTTTCCTTG-------GGCCEEEEEEEEE
T ss_pred CHHHHHHHHHHHHhcCCcEEEEEeccCCC-CceeEEEEC-CCC--CEEEEEECCCCChHH-------hcCeEEEEEEEEE
Confidence 32211 24455566788887766666555 567877653 345 467776654311000 0112468889999
Q ss_pred cHHHHHHHHhc
Q 016922 359 TLDFLNQVANG 369 (380)
Q Consensus 359 ~l~fL~~~~~~ 369 (380)
+.++|.+.+..
T Consensus 185 ~~~~l~~~l~~ 195 (468)
T 1hm9_A 185 DNERLFEALKN 195 (468)
T ss_dssp EHHHHHHHHTT
T ss_pred EHHHHHHHHHh
Confidence 99977666543
No 24
>4evw_A Nucleoside-diphosphate-sugar pyrophosphorylase; structural genomics, PSI-biology; HET: MSE; 1.90A {Vibrio cholerae}
Probab=98.82 E-value=6.2e-09 Score=97.95 Aligned_cols=172 Identities=13% Similarity=0.151 Sum_probs=102.5
Q ss_pred EEEecCCCccccC---CCCCCccccccCCCCCccHHHHHHHHHHHHHHHHhhhcCCCCCCCCceeEEEEcCCCchHHHHH
Q 016922 122 VLLLSGGQGTRLG---SSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRK 198 (380)
Q Consensus 122 vvlLAGG~GTRLg---~~~PKg~~~i~l~s~ksllq~~~e~i~~l~~la~~~~~~~~~~~~~~ip~~IMTS~~t~e~t~~ 198 (380)
+||||||.||||+ .+.||.|.|| .|||++++.++++... .+ +.-+++...+.++ +.+
T Consensus 2 ~iIlAaG~GtRl~plt~~~PK~llpv---~gkpli~~~l~~l~~~--------------~g--i~~iivv~~~~~~-~~~ 61 (255)
T 4evw_A 2 IVIPMAGMSSRFFKAGYTQPKYMLEA---HGQTLFEHSVNSFAAY--------------FA--STPFLFIVRNVYD-TAV 61 (255)
T ss_dssp EEEECCSCCHHHHHTTCCSCGGGCEE---TTEEHHHHHHGGGGGG--------------TT--TSCEEEEEESSTT-HHH
T ss_pred EEEEcCCCCcccccCCCCCCccccEE---CCeEHHHHHHHHHhcc--------------CC--CceEEEEECchhh-hHH
Confidence 6899999999996 4679999999 8999999998876520 02 2223333345555 666
Q ss_pred HHhhc-CCCCCCCCceEEEEeCCeeeEecCCcccccCCCccccccCCCchhhHHHhhCChHHHHHH---CCCeEEEEEcC
Q 016922 199 YFEGH-KYFGLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMAT---RGIKYIDCYGV 274 (380)
Q Consensus 199 ~f~~~-~~FGl~~~~V~~f~Q~~~P~~~~~gki~l~~~~~i~~~P~GnGgi~~aL~~~g~l~~l~~---~Gi~yi~v~~v 274 (380)
+++++ ..+|.+... .+. +...|.|+|+...... +.+.+ .+-+.+.|.+.
T Consensus 62 ~~~~~~~~~~~~~~~-~~~---------------------~~~~~~Gt~~av~~a~-----~~l~~~~~~~~~~~lV~~g 114 (255)
T 4evw_A 62 FVREKATQLGIKQFY-IAE---------------------LHTETRGQAETVTLGL-----EELAKQGVDYQGSITVFNI 114 (255)
T ss_dssp HHHHHHHHHTCSSEE-EEE---------------------ESSCCSSHHHHHHHHH-----HHHHHTTCCCCSCEEECCT
T ss_pred HHHHHHHHcCCCCce-EEE---------------------eCCCCCCHHHHHHHHH-----HHHhhcccCCCCcEEEEeC
Confidence 66542 224442111 122 1235789988776542 33321 23445888999
Q ss_pred CCcccccCCHHHHHHHHHhCCceEEEEeecCCCCcccceEEEEcCCCCeEEEEecccChhhhhhhccCCCcceecccccc
Q 016922 275 DNALVRVADPTFLGYFIDKGVSAGAKVVRKAYPQEKVGVFVRRGKGGPLTVVEYSELDPSLASAINQETGRLRFCWSNVC 354 (380)
Q Consensus 275 DN~L~~~~Dp~~lG~~~~~~~d~~~kvv~k~~p~e~vGvl~~~~~~g~~~vvEYsel~~~~~~~~~~~~g~l~f~~gNi~ 354 (380)
|+++.....+.+ ..+++.++-+.+..+| +.|++... .+|...|+++.|-++ . + +..|++
T Consensus 115 D~l~~~~~~~~~-----~~~~~~~i~~~~~~~p--~yG~v~~d-~~g~~~V~~i~EK~~-------~-s-----~~~~~G 173 (255)
T 4evw_A 115 DTFRPNFVFPDI-----SQHSDGYLEVFQGGGD--NWSFAKPE-HAGSTKVIQTAEKNP-------I-S-----DLCSTG 173 (255)
T ss_dssp TEECTTCCCCGG-----GGSSSEEEEEEECCSS--CSCEEEES-STTCCBEEEEESSSC-------S-S-----SEEEEE
T ss_pred CEEEecchhHHH-----hhcCCcEEEEEecCCC--ceeEEEEC-CCCCeEEEEEEeccC-------c-c-----CcEEEe
Confidence 996522221222 3566766655554444 78988764 345335777766521 1 1 236888
Q ss_pred chhccHH
Q 016922 355 LHMFTLD 361 (380)
Q Consensus 355 ~~~f~l~ 361 (380)
+++|+..
T Consensus 174 iY~f~~~ 180 (255)
T 4evw_A 174 LYHFNRK 180 (255)
T ss_dssp EEEESCH
T ss_pred EEEECcH
Confidence 8888764
No 25
>1tzf_A Glucose-1-phosphate cytidylyltransferase; nucleotidyltransferase, mixed alpha/beta fold; HET: C5G; 2.10A {Salmonella enterica subsp} SCOP: c.68.1.13 PDB: 1wvc_A*
Probab=98.80 E-value=2.4e-08 Score=92.73 Aligned_cols=190 Identities=17% Similarity=0.195 Sum_probs=107.6
Q ss_pred EEEEEecCCCccccCC---CCCCccccccCCCCCccHHHHHHHHHHHHHHHHhhhcCCCCCCCCce-eEEEEcCCCchHH
Q 016922 120 LAVLLLSGGQGTRLGS---SDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAI-HWYIMTSPFTDDA 195 (380)
Q Consensus 120 vavvlLAGG~GTRLg~---~~PKg~~~i~l~s~ksllq~~~e~i~~l~~la~~~~~~~~~~~~~~i-p~~IMTS~~t~e~ 195 (380)
+.+||||||.||||+. +.||.+.|+ .|||++++.++++.+ .+ + .++|.| .+.++.
T Consensus 3 ~~avIlAaG~gtRl~~lt~~~pK~l~~i---~gkpli~~~l~~l~~---------------~g--~~~i~vv~-~~~~~~ 61 (259)
T 1tzf_A 3 SKAVILAGGLGTRLSEETIVKPKPMVEI---GGKPILWHIMKMYSV---------------HG--IKDFIICC-GYKGYV 61 (259)
T ss_dssp CEEEEEECSCC--------CCCGGGCEE---TTEEHHHHHHHHHHH---------------TT--CCEEEEEE-CTTHHH
T ss_pred cEEEEECCCCcccCCCccCCCCccccEE---CCEEHHHHHHHHHHH---------------CC--CCEEEEEc-ccCHHH
Confidence 5789999999999985 679999999 699999999888764 12 3 334555 456689
Q ss_pred HHHHHhhcCCCCCCCCceEEEEeCCeeeEecCCcccccCCCcc----ccccCCCchhhHHHhhCChHHHHHHCCCeEEEE
Q 016922 196 TRKYFEGHKYFGLESDQVTFFQQGTIPCVSKDGRFIMETPYKV----AKAPDGNGGVYSALKSSKLLEDMATRGIKYIDC 271 (380)
Q Consensus 196 t~~~f~~~~~FGl~~~~V~~f~Q~~~P~~~~~gki~l~~~~~i----~~~P~GnGgi~~aL~~~g~l~~l~~~Gi~yi~v 271 (380)
+++++.+...++ ..+.+..|+.--.+- .+ ...++.+ ...+.|+|+.+.+.... +. +-+++.+
T Consensus 62 i~~~~~~~~~~~---~~~~~~~~~~~~~~~-~~---~~~~~~v~~~~~~~~~gt~~al~~a~~~-----~~--~~~~~lv 127 (259)
T 1tzf_A 62 IKEYFANYFLHM---SDVTFHMAENRMEVH-HK---RVEPWNVTLVDTGDSSMTGGRLKRVAEY-----VK--DDEAFLF 127 (259)
T ss_dssp HHHHHHTHHHHH---SCEEEEGGGTEEEET-TC---CCCCCEEEEEECCSSCCHHHHHHHTGGG-----TT--TSSCEEE
T ss_pred HHHHHhhccccc---ccccccccccceeee-ec---cccccceeeeecccccCcHHHHHHHHHh-----cC--CCCcEEE
Confidence 999998632110 123232222100000 00 0011211 13478888877654332 11 2367888
Q ss_pred EcCCCcccccCCHHHHHHHHHhCCceEEEEeecCCCCcccceEEEEcCCCCeEEEEecccChhhhhhhccCCCcceeccc
Q 016922 272 YGVDNALVRVADPTFLGYFIDKGVSAGAKVVRKAYPQEKVGVFVRRGKGGPLTVVEYSELDPSLASAINQETGRLRFCWS 351 (380)
Q Consensus 272 ~~vDN~L~~~~Dp~~lG~~~~~~~d~~~kvv~k~~p~e~vGvl~~~~~~g~~~vvEYsel~~~~~~~~~~~~g~l~f~~g 351 (380)
.+.|++. ...-..++.++...++++++..+. . ....|.+... +| .|+++.|.|... ....
T Consensus 128 ~~~D~~~-~~~~~~~~~~~~~~~~~~t~~~~~--~-~~~~g~v~~~--~g--~v~~~~ekp~~~------------~~~~ 187 (259)
T 1tzf_A 128 TYGDGVA-DLDIKATIDFHKAHGKKATLTATF--P-PGRFGALDIQ--AG--QVRSFQEKPKGD------------GAMI 187 (259)
T ss_dssp EETTEEE-CCCHHHHHHHHHHHCCSEEEEEEC--C-CCCSEEEEEE--TT--EEEEEEESCSCC------------SCCE
T ss_pred EECCEec-ccCHHHHHHHHHHhCCeEEEEEec--C-CCCccEEEEc--CC--EEEEEEecCCCC------------CceE
Confidence 8999964 332234677777778777654332 2 3567877664 56 577777643210 0134
Q ss_pred cccchhccHHHHH
Q 016922 352 NVCLHMFTLDFLN 364 (380)
Q Consensus 352 Ni~~~~f~l~fL~ 364 (380)
|+++++|+.++++
T Consensus 188 ~~Giy~~~~~~l~ 200 (259)
T 1tzf_A 188 NGGFFVLNPSVID 200 (259)
T ss_dssp ECCCEEECGGGGG
T ss_pred EEEEEEeCHHHHH
Confidence 6666677766663
No 26
>4fce_A Bifunctional protein GLMU; GLMU. csgid, niaid, structural genomics, national institute allergy and infectious diseases; HET: GP1; 1.96A {Yersinia pseudotuberculosis} PDB: 3fww_A 1hv9_A* 2oi5_A* 2oi6_A* 2oi7_A* 1fxj_A* 1fwy_A*
Probab=98.80 E-value=9.6e-08 Score=95.89 Aligned_cols=180 Identities=19% Similarity=0.180 Sum_probs=113.4
Q ss_pred CEEEEEecCCCccccCCCCCCccccccCCCCCccHHHHHHHHHHHHHHHHhhhcCCCCCCCCceeEEEEcCCCchHHHHH
Q 016922 119 KLAVLLLSGGQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRK 198 (380)
Q Consensus 119 kvavvlLAGG~GTRLg~~~PKg~~~i~l~s~ksllq~~~e~i~~l~~la~~~~~~~~~~~~~~ip~~IMTS~~t~e~t~~ 198 (380)
++.+|+||||.||||+.+.||.++|+ .|||++++.++++.+. +. -..+|.| .+.++.+.+
T Consensus 8 ~~~aiIlA~G~g~Rl~~~~pK~l~~i---~g~pli~~~l~~l~~~---------------~~-~~i~vv~-~~~~~~i~~ 67 (459)
T 4fce_A 8 SMSVVILAAGKGTRMYSDLPKVLHPL---AGKPMVQHVIDAAMKL---------------GA-QHVHLVY-GHGGELLKK 67 (459)
T ss_dssp CEEEEEEECCCCGGGCCSSCGGGSEE---TTEEHHHHHHHHHHHH---------------TC-SCEEEEE-SSCHHHHHH
T ss_pred cceEEEECCCCCccCCCCCCcccCee---CCeeHHHHHHHHHHhC---------------CC-CcEEEEe-CCCHHHHHH
Confidence 78999999999999998899999999 8999999999987641 21 1234444 445788888
Q ss_pred HHhhcCCCCCCCCceEEEEeCCeeeEecCCcccccCCCccccccCCCchhhH-HHhhCChHHHHHHCCCeEEEEEcCCCc
Q 016922 199 YFEGHKYFGLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYS-ALKSSKLLEDMATRGIKYIDCYGVDNA 277 (380)
Q Consensus 199 ~f~~~~~FGl~~~~V~~f~Q~~~P~~~~~gki~l~~~~~i~~~P~GnGgi~~-aL~~~g~l~~l~~~Gi~yi~v~~vDN~ 277 (380)
++++. + +.+.. ...+.|.++... ++.. + ...+++++.+.|.+
T Consensus 68 ~~~~~---~-----~~~v~---------------------~~~~~g~~~~i~~~~~~------~--~~~~~~lv~~~D~P 110 (459)
T 4fce_A 68 TLADP---S-----LNWVL---------------------QAEQLGTGHAMQQAAPH------F--ADDEDILMLYGDVP 110 (459)
T ss_dssp HC-------------CEEE---------------------CSSCCCHHHHHHHHGGG------S--CTTSEEEEEETTCT
T ss_pred HhccC---C-----cEEEe---------------------CCCCCCcHHHHHHHHHh------c--CCCCcEEEEeCCcc
Confidence 88752 1 11221 122456654433 3321 1 13478999999998
Q ss_pred ccccCCHHHHHHHHH--hCCceEEEEeecCCCCcccceEEEEcCCCCeEEEEecccChhhhhhhccCCCcceeccccccc
Q 016922 278 LVRVADPTFLGYFID--KGVSAGAKVVRKAYPQEKVGVFVRRGKGGPLTVVEYSELDPSLASAINQETGRLRFCWSNVCL 355 (380)
Q Consensus 278 L~~~~Dp~~lG~~~~--~~~d~~~kvv~k~~p~e~vGvl~~~~~~g~~~vvEYsel~~~~~~~~~~~~g~l~f~~gNi~~ 355 (380)
+ .++..+.-..+ .+.++.+-+++..+| .+.|.+... +| .+.++.|-++...... .. ...|+++
T Consensus 111 ~---i~~~~i~~l~~~~~~~~~~~~~~~~~~~-~~~g~v~~~--~g--~v~~~~ek~~~~~~~~-----~~--~~~~~Gi 175 (459)
T 4fce_A 111 L---ISVDTLQRLLAAKPEGGIGLLTVKLDNP-SGYGRIVRE--NG--DVVGIVEHKDASDAQR-----EI--NEINTGI 175 (459)
T ss_dssp T---CCHHHHHHHHHHCCTTSEEEEEEECSCC-TTSCEEEEE--TT--EEEEEECGGGCCTTGG-----GC--CEEEEEE
T ss_pred c---CCHHHHHHHHHHHhhCCEEEEEEecCCC-CcccEEEeC--CC--cEEEEEECCCCChHHh-----hc--cEEEEEE
Confidence 6 34555554433 235666666666665 567887764 56 5666665433211100 11 2468889
Q ss_pred hhccHHHHHHHHhcc
Q 016922 356 HMFTLDFLNQVANGL 370 (380)
Q Consensus 356 ~~f~l~fL~~~~~~~ 370 (380)
++|+.++|.+.++.+
T Consensus 176 y~~~~~~l~~~l~~~ 190 (459)
T 4fce_A 176 LVANGRDLKRWLSLL 190 (459)
T ss_dssp EEEEHHHHHHHHHTC
T ss_pred EEEEHHHHHHHHHHh
Confidence 999999887776543
No 27
>2v0h_A Bifunctional protein GLMU; cell WALL, magnesium, cell shape, transferase, peptidoglycan synthesis, associative mechanism; 1.79A {Haemophilus influenzae} PDB: 2v0i_A* 2v0j_A* 2v0k_A* 2v0l_A* 2vd4_A* 2w0v_A* 2w0w_A* 3twd_A*
Probab=98.75 E-value=1.5e-07 Score=94.46 Aligned_cols=181 Identities=18% Similarity=0.141 Sum_probs=110.4
Q ss_pred CCEEEEEecCCCccccCCCCCCccccccCCCCCccHHHHHHHHHHHHHHHHhhhcCCCCCCCCceeEEEEcCCCchHHHH
Q 016922 118 GKLAVLLLSGGQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATR 197 (380)
Q Consensus 118 gkvavvlLAGG~GTRLg~~~PKg~~~i~l~s~ksllq~~~e~i~~l~~la~~~~~~~~~~~~~~ip~~IMTS~~t~e~t~ 197 (380)
.++.+|+||||.||||+.+.||.++|+ .|||++++.++++.. .+ +.-++....+..+.+.
T Consensus 4 ~~~~aiIlA~G~g~Rl~~~~pK~l~~i---~gkpli~~~l~~l~~---------------~~--~~~iivv~~~~~~~i~ 63 (456)
T 2v0h_A 4 KALSAVILAAGKGTRMYSDLPKVLHTI---AGKPMVKHVIDTAHQ---------------LG--SENIHLIYGHGGDLMR 63 (456)
T ss_dssp CCEEEEEECCCCCGGGCSSSCGGGSEE---TTEEHHHHHHHHHHH---------------TT--CSCEEEEECTTHHHHH
T ss_pred CcceEEEECCCCCcccCCCCCccccEE---CCccHHHHHHHHHHh---------------CC--CCcEEEEeCCCHHHHH
Confidence 368899999999999998889999999 799999999998764 12 2223444445567888
Q ss_pred HHHhhcCCCCCCCCceEEEEeCCeeeEecCCcccccCCCccccccCCCchhhHHHhhCChHHHHHHCCCeEEEEEcCCCc
Q 016922 198 KYFEGHKYFGLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGVDNA 277 (380)
Q Consensus 198 ~~f~~~~~FGl~~~~V~~f~Q~~~P~~~~~gki~l~~~~~i~~~P~GnGgi~~aL~~~g~l~~l~~~Gi~yi~v~~vDN~ 277 (380)
+++.+. + +.+.. ...+.|.++......+ .+. .-+++++.+.|.+
T Consensus 64 ~~~~~~---~-----~~~v~---------------------~~~~~g~~~~~~~~~~-----~~~--~~~~vlv~~~D~P 107 (456)
T 2v0h_A 64 THLANE---Q-----VNWVL---------------------QTEQLGTAHAVQQAAP-----FFK--DNENIVVLYGDAP 107 (456)
T ss_dssp HHTTTC---C-----CEEEE---------------------CSCCCCHHHHHHHHGG-----GCC--TTSEEEEEETTCT
T ss_pred HHhhcC---C-----cEEEe---------------------CCCCCCcHHHHHHHHH-----hcC--CCCeEEEEcCCcc
Confidence 888652 2 22221 1125566554433221 111 1478999999998
Q ss_pred ccccCCHHHHHHHHHh--CCceEEEEeecCCCCcccceEEEEcCCCCeEEEEecccChhhhhhhccCCCcceeccccccc
Q 016922 278 LVRVADPTFLGYFIDK--GVSAGAKVVRKAYPQEKVGVFVRRGKGGPLTVVEYSELDPSLASAINQETGRLRFCWSNVCL 355 (380)
Q Consensus 278 L~~~~Dp~~lG~~~~~--~~d~~~kvv~k~~p~e~vGvl~~~~~~g~~~vvEYsel~~~~~~~~~~~~g~l~f~~gNi~~ 355 (380)
+. ++..+....+. ..++++-+.+..+| ...|.+... +| .+.++.|-++....... .+..|++.
T Consensus 108 ~i---~~~~i~~l~~~~~~~~~~~~~~~~~~~-~~~g~v~~~--~g--~v~~~~ek~~~~~~~~~-------~~~~~~Gi 172 (456)
T 2v0h_A 108 LI---TKETLEKLIEAKPENGIALLTVNLDNP-TGYGRIIRE--NG--NVVAIVEQKDANAEQLN-------IKEVNTGV 172 (456)
T ss_dssp TC---CHHHHHHHHHHCCTTSEEEEEEECSSC-TTSCEEEEE--TT--EEEEEECTTTCCHHHHT-------CCEEEEEE
T ss_pred ee---CHHHHHHHHHHHhcCCEEEEEeecCCC-CccceEEEc--CC--cEEEEEECCCCChhHhc-------CcEEEEEE
Confidence 73 34444433321 25666655565555 456777653 45 45555544331111000 12468888
Q ss_pred hhccHHHHHHHHhc
Q 016922 356 HMFTLDFLNQVANG 369 (380)
Q Consensus 356 ~~f~l~fL~~~~~~ 369 (380)
++|+.+.|.+.++.
T Consensus 173 y~~~~~~l~~~l~~ 186 (456)
T 2v0h_A 173 MVSDGASFKKWLAR 186 (456)
T ss_dssp EEEEHHHHHHHHTT
T ss_pred EEEEHHHHHHHHHH
Confidence 89999887766543
No 28
>2e3d_A UTP--glucose-1-phosphate uridylyltransferase; UDP-glucose, carbohydrate, pyrophosphorylase; 1.95A {Escherichia coli}
Probab=98.72 E-value=4.2e-08 Score=93.79 Aligned_cols=186 Identities=15% Similarity=0.103 Sum_probs=112.1
Q ss_pred CEEEEEecCCCccccCC---CCCCccccccCCCCCccHHHHHHHHHHHHHHHHhhhcCCCCCCCCceeEEEEcCCCchHH
Q 016922 119 KLAVLLLSGGQGTRLGS---SDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDA 195 (380)
Q Consensus 119 kvavvlLAGG~GTRLg~---~~PKg~~~i~l~s~ksllq~~~e~i~~l~~la~~~~~~~~~~~~~~ip~~IMTS~~t~e~ 195 (380)
.+.+||||||.||||+. +.||.+.|+ .|+|++++.++++.. .+ +.-++...++..+.
T Consensus 8 ~~~avIlAaG~gtRl~plt~~~pK~ll~i---~gkpli~~~l~~l~~---------------~g--i~~i~vv~~~~~~~ 67 (302)
T 2e3d_A 8 VKKAVIPVAGLGTRMLPATKAIPKEMLPL---VDKPLIQYVVNECIA---------------AG--ITEIVLVTHSSKNS 67 (302)
T ss_dssp CCEEEEECCSCCGGGTTTTSSSCGGGCEE---TTEEHHHHHHHHHHH---------------TT--CCEEEEEECGGGHH
T ss_pred ccEEEEECCcCcccCCccccCCCceeeEE---CCeEHHHHHHHHHHH---------------CC--CCEEEEEeCCCHHH
Confidence 47789999999999984 679999999 789999999998764 12 32334444456788
Q ss_pred HHHHHhhcC----------------------CCCCCCCceEEEEeCCeeeEecCCcccccCCCccccccCCCchhhHHHh
Q 016922 196 TRKYFEGHK----------------------YFGLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALK 253 (380)
Q Consensus 196 t~~~f~~~~----------------------~FGl~~~~V~~f~Q~~~P~~~~~gki~l~~~~~i~~~P~GnGgi~~aL~ 253 (380)
+.++|.+.. .+|. +|.+. ....|.|+|+......
T Consensus 68 i~~~~~~~~~l~~~l~~~~~~~~l~~~~~~~~~~~---~i~~~---------------------~~~~~~Gt~~al~~a~ 123 (302)
T 2e3d_A 68 IENHFDTSFELEAMLEKRVKRQLLDEVQSICPPHV---TIMQV---------------------RQGLAKGLGHAVLCAH 123 (302)
T ss_dssp HHHHHSCCHHHHHHHC----CHHHHHHHHTSCTTC---EEEEE---------------------ECSSCCCHHHHHHHTH
T ss_pred HHHHHhcchhhhhhhhhccchhhhhhhhhccccCc---ceEEe---------------------eCCccCCHHHHHHHHH
Confidence 999987521 0111 12111 1234778888665432
Q ss_pred hCChHHHHHHCCCeEEEEEcCCCcccc---cC---C-HHHHHHHHHhCCceEEEEeecCCCCcccceEEEE-c--CCC-C
Q 016922 254 SSKLLEDMATRGIKYIDCYGVDNALVR---VA---D-PTFLGYFIDKGVSAGAKVVRKAYPQEKVGVFVRR-G--KGG-P 322 (380)
Q Consensus 254 ~~g~l~~l~~~Gi~yi~v~~vDN~L~~---~~---D-p~~lG~~~~~~~d~~~kvv~k~~p~e~vGvl~~~-~--~~g-~ 322 (380)
+.+ +-+.+.|.+.|+++.. .. + -.++..+.+.++ +.+.+.+. .+...+|++... + .+| .
T Consensus 124 -----~~~---~~~~~lv~~~D~~~~~~~~~~~~~~l~~l~~~~~~~~~-~~i~~~~~-~~~~~yg~v~~~~~~~~~g~~ 193 (302)
T 2e3d_A 124 -----PVV---GDEPVAVILPDVILDEYESDLSQDNLAEMIRRFDETGH-SQIMVEPV-ADVTAYGVVDCKGVELAPGES 193 (302)
T ss_dssp -----HHH---CSSCEEEECTTEEECTTSSCTTTSTHHHHHHHHHHHCC-EEEEEEEC-SCGGGSEEEECTTCCCCTTCE
T ss_pred -----HHc---CCCcEEEEcCCccccCccccchHHHHHHHHHHHHhcCC-cEEEEEEc-cCCCCccEEEecccccCCCCc
Confidence 222 1257889999999631 22 2 235666666666 44444443 345678887541 0 234 2
Q ss_pred eEEEEecccChhhhhhhccCCCcceeccccccchhccHHHHHHHH
Q 016922 323 LTVVEYSELDPSLASAINQETGRLRFCWSNVCLHMFTLDFLNQVA 367 (380)
Q Consensus 323 ~~vvEYsel~~~~~~~~~~~~g~l~f~~gNi~~~~f~l~fL~~~~ 367 (380)
..|..+.|-|..- .... +..|+++++|+.++++.+.
T Consensus 194 ~~v~~~~ekp~~~-------~~~~--~~~~~Giyi~~~~~l~~l~ 229 (302)
T 2e3d_A 194 VPMVGVVEKPKAD-------VAPS--NLAIVGRYVLSADIWPLLA 229 (302)
T ss_dssp EEECEEEESCCTT-------TCSC--SEEEEEEEEECTTHHHHHT
T ss_pred eeEEEEEECCCCC-------cccc--ceEEEEEEEECHHHHHHHH
Confidence 3555665544310 0011 2368888899988876553
No 29
>2x65_A Mannose-1-phosphate guanylyltransferase; nucleotidyltransferase; HET: M1P; 2.10A {Thermotoga maritima} PDB: 2x5z_A* 2x60_A* 2x5s_A*
Probab=98.69 E-value=8.3e-08 Score=93.98 Aligned_cols=185 Identities=17% Similarity=0.169 Sum_probs=110.0
Q ss_pred EEEEEecCCCccccC----CCCCCccccccCCCC-CccHHHHHHHHHHHHHHHHhhhcCCCCCCCCceeEEEEcCCCchH
Q 016922 120 LAVLLLSGGQGTRLG----SSDPKGCVNIGLPSG-KSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDD 194 (380)
Q Consensus 120 vavvlLAGG~GTRLg----~~~PKg~~~i~l~s~-ksllq~~~e~i~~l~~la~~~~~~~~~~~~~~ip~~IMTS~~t~e 194 (380)
+.+||||||.||||+ ...||.++|+ .| +|++|+.++++... .+.. ..+|.|.....+
T Consensus 2 m~~VILAgG~GtRl~Pls~~~~pK~ll~l---~g~~pli~~~l~~l~~~--------------~~~~-~iivvt~~~~~~ 63 (336)
T 2x65_A 2 MKALILAGGSGERFWPLSTPETPKQFLKL---FGNKSLMRWTFERVLEE--------------MDPK-DVIVVTHKDYVE 63 (336)
T ss_dssp CEEEEECCCBCGGGTTTSCTTCBGGGCCC---BTTBCHHHHHHHHHHTT--------------CCGG-GEEEEEEGGGHH
T ss_pred eEEEEECCCCCccCCCCcCCCCCceEEEC---CCCCcHHHHHHHHHhcc--------------CCCC-cEEEEcChHHHH
Confidence 467899999999998 5579999988 66 99999999987631 0111 345666554456
Q ss_pred HHHHHHhhcCCCCCCCCceEEEEeCCeeeEecCCcccccCCCccccccCCCchhhHHHhhCChHHHHHHCCCeEEEEEcC
Q 016922 195 ATRKYFEGHKYFGLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGV 274 (380)
Q Consensus 195 ~t~~~f~~~~~FGl~~~~V~~f~Q~~~P~~~~~gki~l~~~~~i~~~P~GnGgi~~aL~~~g~l~~l~~~Gi~yi~v~~v 274 (380)
.+.+++.+.. ..++ + +...|.|+|+........ + ..-+++.|.+.
T Consensus 64 ~i~~~l~~~~-----~~~i--i---------------------~e~~~~gta~ai~~a~~~-----~--~~~~~~lvl~~ 108 (336)
T 2x65_A 64 RTKKELPELP-----DENI--I---------------------AEPMKKNTAPACFIGTKL-----A--DDDEPVLVLPA 108 (336)
T ss_dssp HHHHHCTTSC-----GGGE--E---------------------EESSCCCHHHHHHHHHTT-----S--CTTCEEEEEET
T ss_pred HHHHHhhccc-----cceE--E---------------------eCCCCCCcHHHHHHHHHh-----h--CCCCEEEEEcC
Confidence 6777776521 0111 1 122366777766543221 1 12368899999
Q ss_pred CCcccccCCHH----HH----HHHHHhCCceEEEEeecCCCCcccceEEEEcC--CCCeEEEEecccChhhhhhhccCCC
Q 016922 275 DNALVRVADPT----FL----GYFIDKGVSAGAKVVRKAYPQEKVGVFVRRGK--GGPLTVVEYSELDPSLASAINQETG 344 (380)
Q Consensus 275 DN~L~~~~Dp~----~l----G~~~~~~~d~~~kvv~k~~p~e~vGvl~~~~~--~g~~~vvEYsel~~~~~~~~~~~~g 344 (380)
|.++. ++. ++ -++.+.+..+++-+.+ +.|...+|.+..... ++...|..+.|-|.....+..-..|
T Consensus 109 D~~~~---~~~~~~~~l~~~~~~~~~~~~~vt~~i~p-~~~~~~yG~I~~~~~~~~~~~~V~~f~EKp~~~~a~~~~~~g 184 (336)
T 2x65_A 109 DHRIP---DTKKFWKTVKKALDALEKYDGLFTFGIVP-TRPETGYGYIEIGEELEEGVHKVAQFREKPDLETAKKFVESG 184 (336)
T ss_dssp TCBCC---CHHHHHHHHHHHHHHHHHHCSEEEEEECC-CSCCSSSEEEEEEEEEETTEEEEEEEEESCCHHHHHHHHHHT
T ss_pred Cceec---cHHHHHHHHHHHHHHHHhcCCeEEEEeec-ccCCCCceEEEECCccCCCccEEEEEEECCChHHHHHHHhcC
Confidence 99863 332 12 2344446666665544 456678898865310 1114677788877542211110123
Q ss_pred cceeccccccchhccHHHHH
Q 016922 345 RLRFCWSNVCLHMFTLDFLN 364 (380)
Q Consensus 345 ~l~f~~gNi~~~~f~l~fL~ 364 (380)
. | .-|.++++|+.++|.
T Consensus 185 ~--y-~~n~Giy~~~~~~ll 201 (336)
T 2x65_A 185 R--F-LWNSGMFLWKAREFI 201 (336)
T ss_dssp C--E-EEEEEEEEEEHHHHH
T ss_pred C--e-EEEeeeEEEEHHHHH
Confidence 2 2 248889999998773
No 30
>2ux8_A Glucose-1-phosphate uridylyltransferase; UGPG, GALU pyrophosphorylase, nucleotidyltransferase; HET: G1P; 2.65A {Sphingomonas elodea}
Probab=98.68 E-value=3e-08 Score=94.64 Aligned_cols=188 Identities=13% Similarity=0.092 Sum_probs=102.2
Q ss_pred CCEEEEEecCCCccccCC---CCCCccccccCCCCCccHHHHHHHHHHHHHHHHhhhcCCCCCCCCceeEEEEcCCCchH
Q 016922 118 GKLAVLLLSGGQGTRLGS---SDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDD 194 (380)
Q Consensus 118 gkvavvlLAGG~GTRLg~---~~PKg~~~i~l~s~ksllq~~~e~i~~l~~la~~~~~~~~~~~~~~ip~~IMTS~~t~e 194 (380)
..+.+||||||.||||+. ..||.+.|+ .|||++++.++++.. .+ +.-+++...+..+
T Consensus 13 ~~~~avIlAaG~gtRl~plt~~~pK~ll~i---~gkpli~~~l~~l~~---------------~g--~~~i~vv~~~~~~ 72 (297)
T 2ux8_A 13 PLRKAVFPVAGLGTRFLPATKAMPKEMLPV---VDRPLIQYAVDEAVE---------------AG--IEQMIFVTGRGKS 72 (297)
T ss_dssp CCCEEEEEECCCCGGGTTTTSSSCGGGCEE---TTEEHHHHHHHHHHH---------------TT--CCEEEEEECTTCH
T ss_pred CccEEEEECCCCccccCccccCCCceeeeE---CCeEHHHHHHHHHHh---------------CC--CCEEEEEeCCCHH
Confidence 357889999999999974 679999999 699999999998764 12 3334444455688
Q ss_pred HHHHHHhhcC-------------------C-CCCCCCceEEEEeCCeeeEecCCcccccCCCccccccCCCchhhHHHhh
Q 016922 195 ATRKYFEGHK-------------------Y-FGLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKS 254 (380)
Q Consensus 195 ~t~~~f~~~~-------------------~-FGl~~~~V~~f~Q~~~P~~~~~gki~l~~~~~i~~~P~GnGgi~~aL~~ 254 (380)
.+.++|.+.. + +|+ +|.+.. ...|.|+|+...+..
T Consensus 73 ~i~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~---~i~~~~---------------------~~~~~Gt~~al~~a~- 127 (297)
T 2ux8_A 73 ALEDHFDIAYELEATMAARGKSLDVLDGTRLKPG---NIAYVR---------------------QQEPMGLGHAVWCAR- 127 (297)
T ss_dssp HHHHHTSCCHHHHHHHHTTTCCGGGGTTSCCSTT---SEEEEE---------------------CCSCCCHHHHHHTTH-
T ss_pred HHHHHHhhhhhhhhhhhhccchhhhhhhcccCCC---ceEEEe---------------------CCCCCChHHHHHHHH-
Confidence 9999886520 0 122 122211 224678887766432
Q ss_pred CChHHHHHHCCCeEEEEEcCCCcccc-cCC-HHHHHHHHHhCCceEEEEeecC-CCCcccceEEEEc-CCCCeEEEEecc
Q 016922 255 SKLLEDMATRGIKYIDCYGVDNALVR-VAD-PTFLGYFIDKGVSAGAKVVRKA-YPQEKVGVFVRRG-KGGPLTVVEYSE 330 (380)
Q Consensus 255 ~g~l~~l~~~Gi~yi~v~~vDN~L~~-~~D-p~~lG~~~~~~~d~~~kvv~k~-~p~e~vGvl~~~~-~~g~~~vvEYse 330 (380)
+.+ +-+++.|.+.|+++.. ..+ -.++..+.+.++ ..+.+.+.. .+..++|++.... .+|...|..+.|
T Consensus 128 ----~~~---~~~~~lv~~~D~~~~~~~~~l~~l~~~~~~~~~-~~i~~~~~~~~~~~~yg~v~~~~~~~~~~~v~~~~e 199 (297)
T 2ux8_A 128 ----DIV---GDEPFAVLLPDDFMFGQPGCLKQMVDAYNKVGG-NLICAEEVPDDQTHRYGIITPGTQDGVLTEVKGLVE 199 (297)
T ss_dssp ----HHH---CSSCEEEECTTEEEESSSCHHHHHHHHHHHHCS-EEEEEC-----------CCCCCCBCSSEEEC-----
T ss_pred ----HHc---CCCcEEEEeCCeecCCChHHHHHHHHHHHhcCC-CEEEEEecCcccCCCCCeEEecccCCCceeEEEEEE
Confidence 222 1367899999999531 122 235666666665 333332221 1235678775310 123234555555
Q ss_pred cChhhhhhhccCCCcceeccccccchhccHHHHHHHH
Q 016922 331 LDPSLASAINQETGRLRFCWSNVCLHMFTLDFLNQVA 367 (380)
Q Consensus 331 l~~~~~~~~~~~~g~l~f~~gNi~~~~f~l~fL~~~~ 367 (380)
-|... .... +..|+++++|+.++++.+.
T Consensus 200 kp~~~-------~~~~--~~~~~Giyi~~~~~l~~l~ 227 (297)
T 2ux8_A 200 KPAPG-------TAPS--NLSVIGRYILQPEVMRILE 227 (297)
T ss_dssp ------------------CCCEEEEEEECTHHHHHHH
T ss_pred CCCCC-------CCCc--cEEEEEEEEECHHHHHHHH
Confidence 43210 0001 2468899999998886654
No 31
>2pa4_A UTP-glucose-1-phosphate uridylyltransferase; phosphorylase, nucleotidyltransferase, metabolism; HET: GUD; 2.00A {Corynebacterium glutamicum atcc 13032}
Probab=98.66 E-value=5.8e-08 Score=94.15 Aligned_cols=188 Identities=12% Similarity=0.043 Sum_probs=110.2
Q ss_pred EEEEEecCCCccccCC---CCCCccccccCCCCCccHHHHHHHHHHHHHHHHhhhcCCCCCCCCceeEEEEcCCCchHHH
Q 016922 120 LAVLLLSGGQGTRLGS---SDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDAT 196 (380)
Q Consensus 120 vavvlLAGG~GTRLg~---~~PKg~~~i~l~s~ksllq~~~e~i~~l~~la~~~~~~~~~~~~~~ip~~IMTS~~t~e~t 196 (380)
+.+||||||.||||+. +.||.+.|+ .|+|++++.++++.. .+ +.-+++..++..+.+
T Consensus 13 ~~aVIlAaG~gtRl~plt~~~pK~ll~i---~gkpli~~~l~~l~~---------------~g--i~~iivv~~~~~~~i 72 (323)
T 2pa4_A 13 KTVVVPAAGLGTRFLPATKTVPKELLPV---VDTPGIELIAAEAAE---------------LG--ATRLAIITAPNKAGV 72 (323)
T ss_dssp CEEEEECCCCCGGGTTGGGTSCGGGCEE---TTEEHHHHHHHHHHH---------------TT--CCEEEEEECTTCHHH
T ss_pred eEEEEECCCCccccCccccCCCceeeeE---CCEEHHHHHHHHHHh---------------CC--CCEEEEEecCcHHHH
Confidence 6789999999999974 679999999 699999999998764 12 333444445567888
Q ss_pred HHHHhhcCC---------------------CCCCCCceEEEEeCCeeeEecCCcccccCCCccccccCCCchhhHHHhhC
Q 016922 197 RKYFEGHKY---------------------FGLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSS 255 (380)
Q Consensus 197 ~~~f~~~~~---------------------FGl~~~~V~~f~Q~~~P~~~~~gki~l~~~~~i~~~P~GnGgi~~aL~~~ 255 (380)
.++|.+... +|+ +|.+.. ...|.|+|+.+.+...
T Consensus 73 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~---~i~~~~---------------------~~~~~Gt~~al~~a~~- 127 (323)
T 2pa4_A 73 LAHFERSSELEETLMERGKTDQVEIIRRAADLI---KAVPVT---------------------QDKPLGLGHAVGLAES- 127 (323)
T ss_dssp HHTTSCCHHHHHHHHHTTCHHHHHHTTHHHHHC---EEEEEE---------------------CSSCCCHHHHHHTTGG-
T ss_pred HHHHhccchhhhhhhccchhhhhhhhhccccCc---ceEEEe---------------------CCccCCcHHHHHHHHH-
Confidence 888764210 111 122211 1235688877764332
Q ss_pred ChHHHHHHCCCeEEEEEcCCCcccc-cCC-HHHHHHHHHhCCceEEEEeecC-CCCcccceEEEEc---CCCCeEEEEec
Q 016922 256 KLLEDMATRGIKYIDCYGVDNALVR-VAD-PTFLGYFIDKGVSAGAKVVRKA-YPQEKVGVFVRRG---KGGPLTVVEYS 329 (380)
Q Consensus 256 g~l~~l~~~Gi~yi~v~~vDN~L~~-~~D-p~~lG~~~~~~~d~~~kvv~k~-~p~e~vGvl~~~~---~~g~~~vvEYs 329 (380)
.+ ..+-+++.|.+.|+++ . ..+ -.++.++.+.++ ..+.+.+.. .+....|++.... .+|...|+.+.
T Consensus 128 ----~l-~~~~d~~lv~~~D~~~-~~~~~l~~l~~~~~~~~~-~~i~~~~~~~~~~~~yg~v~~d~~~~~~~~~~V~~~~ 200 (323)
T 2pa4_A 128 ----VL-DDDEDVVAVMLPDDLV-LPTGVMERMAQVRAEFGG-SVLCAVEVSEADVSKYGIFEIEADTKDSDVKKVKGMV 200 (323)
T ss_dssp ----GS-CSSCCEEEEECTTEEE-ESSCHHHHHHHHHHTTCS-EEEEEEECCGGGGGGSEEEEEEECCSSTTEEEEEEEE
T ss_pred ----Hh-cCCCCeEEEEeCCccc-CchHHHHHHHHHHHhcCC-cEEEEEEecccccCCccEEEeCCcccCCCceeEEEEE
Confidence 11 1233568899999997 4 222 235566655554 223332221 1235678876420 23323577776
Q ss_pred ccChhhhhhhccCCCcceeccccccchhccHHHHHHHHh
Q 016922 330 ELDPSLASAINQETGRLRFCWSNVCLHMFTLDFLNQVAN 368 (380)
Q Consensus 330 el~~~~~~~~~~~~g~l~f~~gNi~~~~f~l~fL~~~~~ 368 (380)
|-|... .... +..|+++++|+.++++.+.+
T Consensus 201 Ekp~~~-------~~~~--~~~~~GiY~~~~~~~~~l~~ 230 (323)
T 2pa4_A 201 EKPAIE-------DAPS--RLAATGRYLLDRKIFDALRR 230 (323)
T ss_dssp ESCCTT-------TCSC--SEEEEEEEEEETHHHHHHHH
T ss_pred ECCCCc-------cccc--cEEEEEEEEECHHHHHHHHh
Confidence 654310 0001 23678888898887766543
No 32
>1h7e_A 3-deoxy-manno-octulosonate cytidylyltransferase; nucleotidyltransferase, CMP-KDO synthetase, nucleoside monophosphate glycosides; 1.83A {Escherichia coli} SCOP: c.68.1.13 PDB: 1gqc_A* 1gq9_A 1h6j_A 1h7f_A* 1h7g_A* 1h7h_A* 1h7t_A*
Probab=98.65 E-value=2.1e-07 Score=85.72 Aligned_cols=175 Identities=16% Similarity=0.204 Sum_probs=104.2
Q ss_pred CEEEEEecCCCccccCCCCCCccccccCCCCCccHHHHHHHHHHHHHHHHhhhcCCCCCCCCceeEEEEcCCCchHHHHH
Q 016922 119 KLAVLLLSGGQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRK 198 (380)
Q Consensus 119 kvavvlLAGG~GTRLg~~~PKg~~~i~l~s~ksllq~~~e~i~~l~~la~~~~~~~~~~~~~~ip~~IMTS~~t~e~t~~ 198 (380)
++.+||||||.||||+ ||.+.|+ .|||++++.++++.+ .+..-.++|.|.. +.+.+
T Consensus 2 ~~~aiIlA~G~~~R~~---~K~l~~i---~g~pli~~~i~~~~~---------------~~~~~~ivvv~~~---~~i~~ 57 (245)
T 1h7e_A 2 KAVIVIPARYGSSRLP---GKPLLDI---VGKPMIQHVYERALQ---------------VAGVAEVWVATDD---PRVEQ 57 (245)
T ss_dssp CEEEEEECCSCCSSST---TGGGCEE---TTEEHHHHHHHHHHT---------------CTTCCEEEEEESC---HHHHH
T ss_pred CeEEEEEcCCcCCCCC---CCccccc---CCchHHHHHHHHHHh---------------CCCCCeEEEECCc---HHHHH
Confidence 5789999999999996 9999999 799999999988763 1211134555542 78888
Q ss_pred HHhhcCCCCCCCCceEEEEeCCeeeEecCCcccccCCCccccccCCCchhhHHHhhCChHHHHHHCCCeEEEEEcCCCcc
Q 016922 199 YFEGHKYFGLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGVDNAL 278 (380)
Q Consensus 199 ~f~~~~~FGl~~~~V~~f~Q~~~P~~~~~gki~l~~~~~i~~~P~GnGgi~~aL~~~g~l~~l~~~Gi~yi~v~~vDN~L 278 (380)
++++ +|+ .++. + + ...+.|.++++.++.. + +.+++.+.+.|.++
T Consensus 58 ~~~~---~~~-----~~~~-------~---------~---~~~~~g~~~~~~~~~~------~---~~~~~lv~~~D~P~ 101 (245)
T 1h7e_A 58 AVQA---FGG-----KAIM-------T---------R---NDHESGTDRLVEVMHK------V---EADIYINLQGDEPM 101 (245)
T ss_dssp HHHH---TTC-----EEEE-------C---------C---SCCSSHHHHHHHHHHH------S---CCSEEEECCTTCTT
T ss_pred HHHH---cCC-----eEEe-------C---------C---CccCCcHHHHHHHHHh------C---CCCEEEEEcCCcCc
Confidence 8875 243 1110 0 0 1235667777765532 1 45789999999997
Q ss_pred cccCCHH----HHHHHHHh-CCceEEEEeecCCCC-----cccceEEEEcCCCCeEEEEecccChh-hhhhhccCCCcce
Q 016922 279 VRVADPT----FLGYFIDK-GVSAGAKVVRKAYPQ-----EKVGVFVRRGKGGPLTVVEYSELDPS-LASAINQETGRLR 347 (380)
Q Consensus 279 ~~~~Dp~----~lG~~~~~-~~d~~~kvv~k~~p~-----e~vGvl~~~~~~g~~~vvEYsel~~~-~~~~~~~~~g~l~ 347 (380)
. +|. ++..+... ++++++-+++. ++. ..++++. +++| .++.+++-+.. .++. + ...
T Consensus 102 ~---~~~~i~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~--~~~g--~~~~~~~~~~~~~r~~-~----~~~ 168 (245)
T 1h7e_A 102 I---RPRDVETLLQGMRDDPALPVATLCHAI-SAAEAAEPSTVKVVV--NTRQ--DALYFSRSPIPYPRNA-E----KAR 168 (245)
T ss_dssp C---CHHHHHHHHHHHHHCTTCCEEEEEEEE-CHHHHTCTTSCEEEE--CTTC--BEEEEESSCSSCCTTG-G----GCC
T ss_pred C---CHHHHHHHHHHHHhCCCCCEEEEeecC-CHHHhcCCCCcEEEE--CCCC--cEEEeecCCCCCCccc-c----cCc
Confidence 3 444 33444445 67776655554 221 1223222 2356 35555542110 0100 0 011
Q ss_pred eccccccchhccHHHHHHHH
Q 016922 348 FCWSNVCLHMFTLDFLNQVA 367 (380)
Q Consensus 348 f~~gNi~~~~f~l~fL~~~~ 367 (380)
. ..|.+.++|+.++|.++.
T Consensus 169 ~-~~~~g~y~~~~~~l~~~~ 187 (245)
T 1h7e_A 169 Y-LKHVGIYAYRRDVLQNYS 187 (245)
T ss_dssp E-EEEEEEEEEEHHHHHHGG
T ss_pred e-eEEEEEEEcCHHHHHHHH
Confidence 2 248899999999987754
No 33
>4fcu_A 3-deoxy-manno-octulosonate cytidylyltransferase; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.90A {Acinetobacter baumannii} PDB: 3pol_A
Probab=98.63 E-value=2.2e-07 Score=87.51 Aligned_cols=181 Identities=13% Similarity=0.124 Sum_probs=107.0
Q ss_pred EEEEEecCCCccccCCCCCCccccccCCCCCccHHHHH-HHHHHHHHHHHhhhcCCCCCCCCceeEEEEcCCCchHHHHH
Q 016922 120 LAVLLLSGGQGTRLGSSDPKGCVNIGLPSGKSLFQLQA-ERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRK 198 (380)
Q Consensus 120 vavvlLAGG~GTRLg~~~PKg~~~i~l~s~ksllq~~~-e~i~~l~~la~~~~~~~~~~~~~~ip~~IMTS~~t~e~t~~ 198 (380)
..+||+|||.||||+ +|.+.|| .|||++++.+ +++.+ .++ =..+|-|. ++.+.+
T Consensus 2 ~~aiIlA~G~stR~~---~K~L~~i---~GkPli~~~i~~~~~~---------------~~~-~~vvVvt~---~~~i~~ 56 (253)
T 4fcu_A 2 KHIVIPARFSSSRLP---GKPLLLI---HDRPMILRVVDQAKKV---------------EGF-DDLCVATD---DERIAE 56 (253)
T ss_dssp EEEEEECCSCCTTST---TGGGSEE---TTEEHHHHHHHHHHTC---------------TTC-CEEEEEES---CHHHHH
T ss_pred eEEEEEeCCCCCCCC---CCceeeE---CCeEhHHHHHHHHHHh---------------cCC-CEEEEECC---HHHHHH
Confidence 568999999999997 5999999 8999999998 87652 121 12345553 588888
Q ss_pred HHhhcCCCCCCCCceEEEEeCCeeeEecCCcccccCCCccccccCCCchhhHHHhhCChHHHHHHCCCeEEEEEcCCCcc
Q 016922 199 YFEGHKYFGLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGVDNAL 278 (380)
Q Consensus 199 ~f~~~~~FGl~~~~V~~f~Q~~~P~~~~~gki~l~~~~~i~~~P~GnGgi~~aL~~~g~l~~l~~~Gi~yi~v~~vDN~L 278 (380)
++++ ||.+ +.+- ....+.|.+.+..++ ..+...+.+++.+++.|++|
T Consensus 57 ~~~~---~g~~---v~~~---------------------~~~~~~Gt~~i~~a~------~~~~~~~~d~vlv~~gD~Pl 103 (253)
T 4fcu_A 57 ICRA---EGVD---VVLT---------------------SADHPSGTDRLSEVA------RIKGWDADDIIVNVQGDEPL 103 (253)
T ss_dssp HHHT---TTCC---EEEC---------------------CTTCCCHHHHHHHHH------HHHTCCTTCEEEECCTTCTT
T ss_pred HHHH---cCCe---EEEe---------------------CCCCCChHHHHHHHH------HhcCcCCCCEEEEEeCCccc
Confidence 8875 5543 1110 012355665555544 33322356899999999998
Q ss_pred cccCCHHHHHH----HHHh-CCceEEEEeec------CCCCcccceEEEEcCCCCeEEEEecc--cChhhhhhhc--cCC
Q 016922 279 VRVADPTFLGY----FIDK-GVSAGAKVVRK------AYPQEKVGVFVRRGKGGPLTVVEYSE--LDPSLASAIN--QET 343 (380)
Q Consensus 279 ~~~~Dp~~lG~----~~~~-~~d~~~kvv~k------~~p~e~vGvl~~~~~~g~~~vvEYse--l~~~~~~~~~--~~~ 343 (380)
.+|..|.- +.+. +.++++-+++- .+|.. +++++ +.+| .++-+++ +|.. ++... ..+
T Consensus 104 ---i~~~~i~~li~~~~~~~~~~~at~~~~~~~~~~~~~p~~-~kvv~--d~~g--~~l~fsr~~ip~~-r~~~~~~~~~ 174 (253)
T 4fcu_A 104 ---LPAQLVQQVAKLLVDKPNCSMSTLCEPIHALDEFQRDSI-VKVVM--SKQN--EALYFSRATIPYD-RDGAKRDEPT 174 (253)
T ss_dssp ---CCHHHHHHHHHHHHHCTTCSEEEEEEECCCHHHHHCTTS-CEEEE--CTTS--BEEEEESSCCSCC-TTTSSSSSCC
T ss_pred ---CCHHHHHHHHHHHHhCCCCCEEEEeEEcCCHHHccCCCc-cEEEE--CCCC--eEEEecCCCCCCC-CCcccccccc
Confidence 45655443 3333 34555444432 34432 45543 2466 4566666 3321 11000 000
Q ss_pred CcceeccccccchhccHHHHHHHHh
Q 016922 344 GRLRFCWSNVCLHMFTLDFLNQVAN 368 (380)
Q Consensus 344 g~l~f~~gNi~~~~f~l~fL~~~~~ 368 (380)
....| ..|++++.|+.++|++..+
T Consensus 175 ~~~~~-~~~~GiY~f~~~~l~~~~~ 198 (253)
T 4fcu_A 175 LHTQA-FRHLGLYAYRVSLLQEYVT 198 (253)
T ss_dssp CCSCC-EEEEEEEEEEHHHHHHHTT
T ss_pred cccce-eEEEEEEEeCHHHHHHHHh
Confidence 01122 3599999999999999864
No 34
>2y6p_A 3-deoxy-manno-octulosonate cytidylyltransferase; lipid A; HET: CTP; 2.10A {Aquifex aeolicus}
Probab=98.62 E-value=2.4e-07 Score=84.62 Aligned_cols=173 Identities=17% Similarity=0.180 Sum_probs=102.4
Q ss_pred CEEEEEecCCCccccCCCCCCccccccCCCCCccHHHHHHHHHHHHHHHHhhhcCCCCCCCCceeEEEEcCCCchHHHHH
Q 016922 119 KLAVLLLSGGQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRK 198 (380)
Q Consensus 119 kvavvlLAGG~GTRLg~~~PKg~~~i~l~s~ksllq~~~e~i~~l~~la~~~~~~~~~~~~~~ip~~IMTS~~t~e~t~~ 198 (380)
++.+||||||.||||+ ||.+.|+ .|||++++.++++... + -..+|.|.. +.+.+
T Consensus 2 ~~~aiIlA~G~g~R~~---~K~l~~i---~g~pli~~~l~~~~~~----------------~-~~i~v~~~~---~~i~~ 55 (234)
T 2y6p_A 2 RRAVIIPARLGSTRLK---EKPLKNL---LGKPLIRWVVEGLVKT----------------G-ERVILATDS---ERVKE 55 (234)
T ss_dssp CEEEEEECCSCCTTTT---TGGGCEE---TTEEHHHHHHHHHHTT----------------T-SCEEEEESC---HHHHH
T ss_pred ceEEEEEcCCCCCCCC---CCcceeE---CCEEHHHHHHHHHHHh----------------C-CEEEEECCh---HHHHH
Confidence 4788999999999998 9999999 7999999999987631 1 123555543 67888
Q ss_pred HHhhcCCCCCCCCceEEEEeCCeeeEecCCcccccCCCccccccCCCchhhHHHhhCChHHHHHHCCCeEEEEEcCCCcc
Q 016922 199 YFEGHKYFGLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGVDNAL 278 (380)
Q Consensus 199 ~f~~~~~FGl~~~~V~~f~Q~~~P~~~~~gki~l~~~~~i~~~P~GnGgi~~aL~~~g~l~~l~~~Gi~yi~v~~vDN~L 278 (380)
++++. . .+.+. ....+.|.|+++.++... +.+++.+.+.|.++
T Consensus 56 ~~~~~----~---~~~~~---------------------~~~~~~g~~~~~~~~~~~---------~~~~vlv~~~D~P~ 98 (234)
T 2y6p_A 56 VVEDL----C---EVFLT---------------------PSDLPSGSDRVLYVVRDL---------DVDLIINYQGDEPF 98 (234)
T ss_dssp HHTTT----S---EEEEC---------------------CTTCCSHHHHHHHHHTTC---------CCSEEEECCTTCCC
T ss_pred HHHhc----e---EEEEC---------------------CcccccchHHHHHHHHhC---------CCCEEEEecCCcCc
Confidence 88641 1 12110 112367888877655321 35789999999987
Q ss_pred cccCCHH----HHHHHHHhCCceEEEEeecC----CCCcccceEEEEcCCCCeEEEEecccChhhhhhhccCCCcceecc
Q 016922 279 VRVADPT----FLGYFIDKGVSAGAKVVRKA----YPQEKVGVFVRRGKGGPLTVVEYSELDPSLASAINQETGRLRFCW 350 (380)
Q Consensus 279 ~~~~Dp~----~lG~~~~~~~d~~~kvv~k~----~p~e~vGvl~~~~~~g~~~vvEYsel~~~~~~~~~~~~g~l~f~~ 350 (380)
. +|. ++..+.+.+ +...-+.... +| ..++++ . +.+| .++.+.+-+.... .+. . ...+ .
T Consensus 99 ~---~~~~i~~l~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~-~-~~~g--~v~~~~e~~~~~~--~~~-~-~~~~-~ 164 (234)
T 2y6p_A 99 V---YEEDIKLIFRELEKGE-RVVTLARKDKEAYERP-EDVKVV-L-DREG--YALYFSRSPIPYF--RKN-D-TFYP-L 164 (234)
T ss_dssp C---CHHHHHHHHHHHHHTC-SEEEEEEECSGGGGCT-TSCEEE-E-CTTS--BEEEEESSCCSCC--SSC-C-SSCC-E
T ss_pred C---CHHHHHHHHHHHHhCC-CeEEEecCCHHHhcCC-CceEEE-E-cCCC--CEeeeecCCCCcc--ccc-c-ccee-e
Confidence 4 443 344444455 4322222211 23 334432 2 2356 4666665432100 000 0 1122 2
Q ss_pred ccccchhccHHHHHHHHh
Q 016922 351 SNVCLHMFTLDFLNQVAN 368 (380)
Q Consensus 351 gNi~~~~f~l~fL~~~~~ 368 (380)
.|.++++|+.++|.++.+
T Consensus 165 ~~~giy~~~~~~l~~~~~ 182 (234)
T 2y6p_A 165 KHVGIYGFRKETLMEFGA 182 (234)
T ss_dssp EEEEEEEEEHHHHHHHHH
T ss_pred EEEEEEEcCHHHHHHHHh
Confidence 489999999999887643
No 35
>2cu2_A Putative mannose-1-phosphate guanylyl transferase; mannose-1-phosphate geranyltransferase, thermus thermophilus structural genomics; 2.20A {Thermus thermophilus} SCOP: b.81.4.1 c.68.1.20
Probab=98.53 E-value=3.6e-07 Score=89.45 Aligned_cols=182 Identities=16% Similarity=0.181 Sum_probs=106.7
Q ss_pred CEEEEEecCCCccccC----CCCCCccccccCCCC-CccHHHHHHHHHHHHHHHHhhhcCCCCCCCCceeEEEEcCCCch
Q 016922 119 KLAVLLLSGGQGTRLG----SSDPKGCVNIGLPSG-KSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTD 193 (380)
Q Consensus 119 kvavvlLAGG~GTRLg----~~~PKg~~~i~l~s~-ksllq~~~e~i~~l~~la~~~~~~~~~~~~~~ip~~IMTS~~t~ 193 (380)
++.+||||||.||||. ...||.++|+ .| +|++|+.++++... .+.. ..+|.|.....
T Consensus 2 ~m~~VILAgG~GtRl~Pls~~~~pK~ll~l---~G~~pli~~~l~~l~~~--------------~~~~-~iiVvt~~~~~ 63 (337)
T 2cu2_A 2 KTYALVMAGGRGERLWPLSREDRPKPFLPL---FEGKTLLEATLERLAPL--------------VPPE-RTLLAVRRDQE 63 (337)
T ss_dssp CEEEEEECCCCCGGGTTTCBTTBCGGGCBC---GGGCBHHHHHHHHHTTT--------------SCGG-GEEEEEEGGGH
T ss_pred CeEEEEEcCCCcccCCccCCCCCCceEEEc---CCCChHHHHHHHHHhCc--------------CCCC-CEEEEcChHHH
Confidence 3678999999999996 4579999988 66 99999999987631 0211 34555554333
Q ss_pred HHHHHHHhhcCCCCCCCCceEEEEeCCeeeEecCCcccccCCCccccccCCCchhhHHHhhCChHHHHHHCCCeEEEEEc
Q 016922 194 DATRKYFEGHKYFGLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYG 273 (380)
Q Consensus 194 e~t~~~f~~~~~FGl~~~~V~~f~Q~~~P~~~~~gki~l~~~~~i~~~P~GnGgi~~aL~~~g~l~~l~~~Gi~yi~v~~ 273 (380)
+.+.+++.+ + .+ + ++..|.|+|+....... +... .+-+++.|.+
T Consensus 64 ~~i~~~l~~-----~---~~-----------------i------~e~~~~gta~ai~~a~~---l~~~--~~~~~~lvl~ 107 (337)
T 2cu2_A 64 AVARPYADG-----I---RL-----------------L------LEPLGRDTAGAVLLGVA---EALK--EGAERLLVLP 107 (337)
T ss_dssp HHHGGGCSS-----S---EE-----------------E------EESSCCHHHHHHHHHHH---HHHH--HTCSEEEEEE
T ss_pred HHHHHHhcc-----C---ce-----------------E------ecCCCCCcHHHHHHHHH---Hhcc--CCCCEEEEEE
Confidence 445444432 0 11 1 12336677775554322 2111 1356899999
Q ss_pred CCCcccccCCHHH----HHHH---HHhCCceEEEEeecCCCCcccceEEEEcCC--CCeEEEEecccChhh-hhhhccCC
Q 016922 274 VDNALVRVADPTF----LGYF---IDKGVSAGAKVVRKAYPQEKVGVFVRRGKG--GPLTVVEYSELDPSL-ASAINQET 343 (380)
Q Consensus 274 vDN~L~~~~Dp~~----lG~~---~~~~~d~~~kvv~k~~p~e~vGvl~~~~~~--g~~~vvEYsel~~~~-~~~~~~~~ 343 (380)
.|.++. ++.. +... ...++.+++-+.+. .|...+|.+... .+ +...|..+.|-|... ++.. ...
T Consensus 108 ~D~~~~---~~~~~~~~l~~~~~~~~~~~~vt~~i~p~-~~~t~yG~I~~~-~~~~~~~~V~~f~EKp~~~~a~~~-~~~ 181 (337)
T 2cu2_A 108 ADHYVG---DDEAYREALATMLEAAEEGFVVALGLRPT-RPETEYGYIRLG-PREGAWYRGEGFVEKPSYAEALEY-IRK 181 (337)
T ss_dssp SSCEES---CHHHHHHHHHHHHHHCCTTCEEEEEECCS-SCCSSSCEEEEE-EEETTEEEEEEEECCCCHHHHHHH-HHT
T ss_pred CCccCC---CHHHHHHHHHHHHHHHHcCCeEEEeeccC-CCCCCceEEEEC-CcccccCeEEEEEeCCChHHHHHH-hhc
Confidence 999863 3322 2211 12355565555544 456788988653 11 113677888876532 2211 113
Q ss_pred CcceeccccccchhccHHHHH
Q 016922 344 GRLRFCWSNVCLHMFTLDFLN 364 (380)
Q Consensus 344 g~l~f~~gNi~~~~f~l~fL~ 364 (380)
| | ..|.++++|+.+++-
T Consensus 182 g---~-~~n~Giy~f~~~~ll 198 (337)
T 2cu2_A 182 G---Y-VWNGGVFAFAPATMA 198 (337)
T ss_dssp T---C-EEEEEEEEECHHHHH
T ss_pred C---C-EEEEEEEEEeHHHHH
Confidence 3 2 358999999998773
No 36
>1vic_A 3-deoxy-manno-octulosonate cytidylyltransferase; structural genomics; 1.80A {Haemophilus influenzae} SCOP: c.68.1.13 PDB: 1vh3_A 3duv_A*
Probab=98.51 E-value=1.2e-06 Score=81.89 Aligned_cols=185 Identities=17% Similarity=0.185 Sum_probs=105.5
Q ss_pred CEEEEEecCCCccccCCCCCCccccccCCCCCccHHHHHHHHHHHHHHHHhhhcCCCCCCCCceeEEEEcCCCchHHHHH
Q 016922 119 KLAVLLLSGGQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRK 198 (380)
Q Consensus 119 kvavvlLAGG~GTRLg~~~PKg~~~i~l~s~ksllq~~~e~i~~l~~la~~~~~~~~~~~~~~ip~~IMTS~~t~e~t~~ 198 (380)
++.+||||||.||||+ +|.+.|+ .|||++++.++++.. .+. -.++|.|. ++.+.+
T Consensus 2 ~~~aiIlA~G~g~R~~---~K~l~~~---~gkpli~~~l~~l~~---------------~~~-~~ivvv~~---~~~i~~ 56 (262)
T 1vic_A 2 SFTVIIPARFASSRLP---GKPLADI---KGKPMIQHVFEKALQ---------------SGA-SRVIIATD---NENVAD 56 (262)
T ss_dssp CCEEEEECCCCCSSST---TGGGCEE---TTEEHHHHHHHHHHH---------------TTC-SEEEEEES---CHHHHH
T ss_pred CcEEEEEcCCCCCCCC---CCccccC---CCeEHHHHHHHHHHh---------------CCC-ceEEEECC---cHHHHH
Confidence 4788999999999996 5999999 799999999988764 122 23455554 266888
Q ss_pred HHhhcCCCCCCCCceEEEEeCCeeeEecCCcccccCCCccccccCCCchhhHHHhhCChHHHHHHCCCeEEEEEcCCCcc
Q 016922 199 YFEGHKYFGLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGVDNAL 278 (380)
Q Consensus 199 ~f~~~~~FGl~~~~V~~f~Q~~~P~~~~~gki~l~~~~~i~~~P~GnGgi~~aL~~~g~l~~l~~~Gi~yi~v~~vDN~L 278 (380)
++++ +|+. ++.+ + ...|.|.|.+..+ +..+...+.+++++.+.|.++
T Consensus 57 ~~~~---~~~~-----~~~~----------------~---~~~~~g~~~~~~~------~~~l~~~~~~~vlv~~~D~P~ 103 (262)
T 1vic_A 57 VAKS---FGAE-----VCMT----------------S---VNHNSGTERLAEV------VEKLAIPDNEIIVNIQGDEPL 103 (262)
T ss_dssp HHHH---TTCE-----EEEC----------------C---CSSCCHHHHHHHH------HHHTTCCTTCEEEECCTTCTT
T ss_pred HHHh---cCCE-----EEEC----------------C---ccccCChHHHHHH------HHHhccCCCCEEEEEeCCcCc
Confidence 8865 3431 1110 0 1235566643332 233322356789999999987
Q ss_pred cccCCH-HHHHHHHHhCCceEEEEeecCCCC----cccceEEEEcCCCCeEEEEecccC-hhhhhhh-------ccCCCc
Q 016922 279 VRVADP-TFLGYFIDKGVSAGAKVVRKAYPQ----EKVGVFVRRGKGGPLTVVEYSELD-PSLASAI-------NQETGR 345 (380)
Q Consensus 279 ~~~~Dp-~~lG~~~~~~~d~~~kvv~k~~p~----e~vGvl~~~~~~g~~~vvEYsel~-~~~~~~~-------~~~~g~ 345 (380)
....+- .++..+...++++.+-+++..++. ..++.+.. +.+|+ ++.+++-+ +..+... ...+-
T Consensus 104 i~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~--v~~f~~~~~~~~r~~~~~~~~~~~~~~p- 179 (262)
T 1vic_A 104 IPPVIVRQVADNLAKFNVNMASLAVKIHDAEELFNPNAVKVLT-DKDGY--VLYFSRSVIPYDRDQFMNLQDVQKVQLS- 179 (262)
T ss_dssp CCHHHHHHHHHHHHHHTCSEEEEEEECCCHHHHTCTTSCEEEE-CTTSB--EEEEESSCSSCCHHHHTTCSCGGGCCCC-
T ss_pred cCHHHHHHHHHHHHhcCCCEEEEEEecCCHHHhcCCCceEEEE-CCCCC--EeeeecCCCCcCCccccccccccccccc-
Confidence 432211 244455556778776666654321 12233332 33563 55555422 1011110 00111
Q ss_pred ceeccccccchhccHHHHHHH
Q 016922 346 LRFCWSNVCLHMFTLDFLNQV 366 (380)
Q Consensus 346 l~f~~gNi~~~~f~l~fL~~~ 366 (380)
..| ..|+++++|+.+++..+
T Consensus 180 ~~~-~~~~giy~~~~~~l~~~ 199 (262)
T 1vic_A 180 DAY-LRHIGIYAYRAGFIKQY 199 (262)
T ss_dssp TTC-EEEEEEEEEEHHHHHHH
T ss_pred cce-EEEEEEEEeeHHHHHHH
Confidence 113 36899999999988765
No 37
>3f1c_A Putative 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 2; structural genomics, PSI-2, protein structure initiative; 2.30A {Listeria monocytogenes str} SCOP: c.68.1.0
Probab=98.37 E-value=4.6e-06 Score=77.44 Aligned_cols=66 Identities=21% Similarity=0.334 Sum_probs=42.7
Q ss_pred CEEEEEecCCCccccCC-CCCCccccccCCCCCccHHHHHHHHHHHHHHHHhhhcCCCCCCCCceeEEEEcCCCchHHHH
Q 016922 119 KLAVLLLSGGQGTRLGS-SDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATR 197 (380)
Q Consensus 119 kvavvlLAGG~GTRLg~-~~PKg~~~i~l~s~ksllq~~~e~i~~l~~la~~~~~~~~~~~~~~ip~~IMTS~~t~e~t~ 197 (380)
++.+||||||.|||||. +.||.+.|+ .|||++++.++++.+ .+..-..+|.|+....+.+.
T Consensus 3 ~~~aIIlAaG~g~Rm~~~~~pK~l~~l---~Gkpll~~~l~~~~~---------------~~~~~~ivvv~~~~~~~~~~ 64 (246)
T 3f1c_A 3 LIYAQILAGGKGTRMGNVSMPKQFLPL---NGKPIIVHTVEKFIL---------------NTRFDKILISSPKEWMNHAE 64 (246)
T ss_dssp CEEEEEECC-----C-CSSCCGGGSEE---TTEEHHHHHHHHHHT---------------CTTCSEEEEEECGGGHHHHH
T ss_pred ccEEEEECCccccccCCCCCCCeEEEE---CCeeHHHHHHHHHHc---------------CCCCCEEEEEeCHHHHHHHH
Confidence 57899999999999998 789999999 899999999887753 11112345555554444566
Q ss_pred HHHhh
Q 016922 198 KYFEG 202 (380)
Q Consensus 198 ~~f~~ 202 (380)
+.+++
T Consensus 65 ~~~~~ 69 (246)
T 3f1c_A 65 DNIKK 69 (246)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66665
No 38
>1ezi_A CMP-N-acetylneuraminic acid synthetase; homodimer, alpha-beta-alpha, transferase; 2.00A {Neisseria meningitidis} SCOP: c.68.1.13 PDB: 1eyr_A
Probab=98.36 E-value=4.3e-06 Score=76.18 Aligned_cols=181 Identities=14% Similarity=0.118 Sum_probs=97.0
Q ss_pred CEEEEEecCCCccccCCCCCCccccccCCCCCccHHHHHHHHHHHHHHHHhhhcCCCCCCCCceeEEEEcCCCchHHHHH
Q 016922 119 KLAVLLLSGGQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRK 198 (380)
Q Consensus 119 kvavvlLAGG~GTRLg~~~PKg~~~i~l~s~ksllq~~~e~i~~l~~la~~~~~~~~~~~~~~ip~~IMTS~~t~e~t~~ 198 (380)
++.+||||||.||||+ ||.+.|+ .|||++++.++++.+. +..-.++|.|. ++.+.+
T Consensus 4 ~~~aiIlA~G~g~R~~---~K~l~~i---~gkpll~~~l~~~~~~---------------~~~~~ivvv~~---~~~i~~ 59 (228)
T 1ezi_A 4 QNIAVILARQNSKGLP---LKNLRKM---NGISLLGHTINAAISS---------------KCFDRIIVSTD---GGLIAE 59 (228)
T ss_dssp EEEEEEECCSSCSSST---TTTTCEE---TTEEHHHHHHHHHHHH---------------CCCSEEEEEES---CHHHHH
T ss_pred ceEEEEecCCCCCCCC---Cccccee---CCcCHHHHHHHHHHhC---------------CCCCEEEEECC---CHHHHH
Confidence 5789999999999998 9999999 7999999999987641 11013455553 466778
Q ss_pred HHhhcCCCCCCCCceEEEEeCCeeeEecCCcccccCCCccccccCCCchhhHHHhhCChHHHHHHCCCeEEEEEcCCCcc
Q 016922 199 YFEGHKYFGLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGVDNAL 278 (380)
Q Consensus 199 ~f~~~~~FGl~~~~V~~f~Q~~~P~~~~~gki~l~~~~~i~~~P~GnGgi~~aL~~~g~l~~l~~~Gi~yi~v~~vDN~L 278 (380)
++++ +|. .+ +.. +..+ .+.|.|. ..++.. .++.+ ..+.+++.+.+.|+++
T Consensus 60 ~~~~---~~~---~~--~~~----------------~~~~--~~~~~g~-~~sv~~--~l~~~-~~~~d~vlv~~~D~P~ 109 (228)
T 1ezi_A 60 EAKN---FGV---EV--VLR----------------PAEL--ASDTASS-ISGVIH--ALETI-GSNSGTVTLLQPTSPL 109 (228)
T ss_dssp HHHH---TTC---EE--EEC----------------CC--------CHH-HHHHHH--HHHHH-TCCSEEEEECCTTCTT
T ss_pred HHHH---cCC---EE--EeC----------------chHH--cCCCCCh-HHHHHH--HHHHh-CCCCCEEEEEcCCCCc
Confidence 8865 343 12 211 0111 1123222 222211 12333 2346899999999997
Q ss_pred cccCCHHHHHHHH----HhCCceEEEEeecCC-CCcccceEEEEcCCCCeEEEEecccChhhhhhhccCCCcceeccccc
Q 016922 279 VRVADPTFLGYFI----DKGVSAGAKVVRKAY-PQEKVGVFVRRGKGGPLTVVEYSELDPSLASAINQETGRLRFCWSNV 353 (380)
Q Consensus 279 ~~~~Dp~~lG~~~----~~~~d~~~kvv~k~~-p~e~vGvl~~~~~~g~~~vvEYsel~~~~~~~~~~~~g~l~f~~gNi 353 (380)
.++..+--.+ ..++++.+-+++..+ | .+..+. +.+|+ ++++.+-.. ...... .-...| ..|.
T Consensus 110 ---~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~p---~~~~~~-~~~g~--~~~~~~~~~-~~~~~~--~~~~~~-~~~~ 176 (228)
T 1ezi_A 110 ---RTGAHIREAFSLFDEKIKGSVVSACPMEHHP---LKTLLQ-INNGE--YAPMRHLSD-LEQPRQ--QLPQAF-RPNG 176 (228)
T ss_dssp ---CCHHHHHHHHTTCCTTTCCCEEEEEECSSCT---TSCEEE-CC--C--EEESSCHHH-HTCCGG--GSCCEE-EEEE
T ss_pred ---CCHHHHHHHHHHHHhcCCCEEEEEEecCCCc---ceeeEE-cCCCc--Eeecccccc-ccCCcc--cCchhh-eeee
Confidence 4555554443 345677666666554 3 333332 23453 444433111 000000 000112 2356
Q ss_pred cchhccHHHHHHH
Q 016922 354 CLHMFTLDFLNQV 366 (380)
Q Consensus 354 ~~~~f~l~fL~~~ 366 (380)
++++++.+.|.+.
T Consensus 177 giy~~~~~~l~~~ 189 (228)
T 1ezi_A 177 AIYINDTASLIAN 189 (228)
T ss_dssp EEEEEEHHHHHHH
T ss_pred EEEEEeHHHHhhC
Confidence 6778888777665
No 39
>1jyk_A LICC protein, CTP:phosphocholine cytidylytransferase; 3D structure, CTP:phosphocholine cytidylyltransferase; 1.50A {Streptococcus pneumoniae} SCOP: c.68.1.13 PDB: 1jyl_A*
Probab=98.35 E-value=1.1e-06 Score=82.19 Aligned_cols=41 Identities=32% Similarity=0.533 Sum_probs=36.8
Q ss_pred CEEEEEecCCCccccC---CCCCCccccccCCCCCccHHHHHHHHHH
Q 016922 119 KLAVLLLSGGQGTRLG---SSDPKGCVNIGLPSGKSLFQLQAERILC 162 (380)
Q Consensus 119 kvavvlLAGG~GTRLg---~~~PKg~~~i~l~s~ksllq~~~e~i~~ 162 (380)
++.+||||||.||||+ .+.||.+.|+ .|+|++++.++++..
T Consensus 25 ~~~aiIlAaG~gtRl~plt~~~pK~l~~i---~gkpli~~~l~~l~~ 68 (254)
T 1jyk_A 25 RVKAIILAAGLGTRLRPLTENTPKALVQV---NQKPLIEYQIEFLKE 68 (254)
T ss_dssp CCEEEEEECSCCGGGTTTTSSSCGGGCEE---TTEEHHHHHHHHHHH
T ss_pred CceEEEECCCCcccCCcccCCCCCEEeeE---CCEEHHHHHHHHHHH
Confidence 5889999999999998 5789999999 799999999998764
No 40
>2xwl_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltran; transferase, MEP pathway; HET: CTP; 1.49A {Mycobacterium smegmatis} PDB: 2xwm_A*
Probab=98.34 E-value=7.3e-06 Score=73.93 Aligned_cols=41 Identities=22% Similarity=0.432 Sum_probs=36.8
Q ss_pred CEEEEEecCCCccccCCCCCCccccccCCCCCccHHHHHHHHHH
Q 016922 119 KLAVLLLSGGQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILC 162 (380)
Q Consensus 119 kvavvlLAGG~GTRLg~~~PKg~~~i~l~s~ksllq~~~e~i~~ 162 (380)
++.+||||||.||||+.+.||.+.|+ .|+|++++.++++.+
T Consensus 2 ~~~~vIlA~G~g~R~~~~~~K~l~~~---~g~pli~~~l~~l~~ 42 (223)
T 2xwl_A 2 ATVAVVPAAGSGERLRAGRPKAFVTL---GGTPLLEHALSGLRA 42 (223)
T ss_dssp CEEEEEECCCCCGGGTSSSCGGGSEE---TTEEHHHHHHHHHHH
T ss_pred ceEEEEECCccCcccCCCCCCeeeEE---CCeEHHHHHHHHHhc
Confidence 47899999999999997789999999 799999999988764
No 41
>2ggo_A 401AA long hypothetical glucose-1-phosphate thymidylyltransferase; beta barrel; 1.80A {Sulfolobus tokodaii} PDB: 2ggq_A*
Probab=98.32 E-value=3.1e-06 Score=83.54 Aligned_cols=167 Identities=19% Similarity=0.193 Sum_probs=101.7
Q ss_pred EEEEecCCCccccC---CCCCCccccccCCCCCccHHHHHHHHHHHHHHHHhhhcCCCCCCCCceeEEEEcCCCchHHHH
Q 016922 121 AVLLLSGGQGTRLG---SSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATR 197 (380)
Q Consensus 121 avvlLAGG~GTRLg---~~~PKg~~~i~l~s~ksllq~~~e~i~~l~~la~~~~~~~~~~~~~~ip~~IMTS~~t~e~t~ 197 (380)
.+|+||||.||||+ ...||.++|+ .|||++++.++++.+ .+.. ..+|.|+.. +.
T Consensus 2 ~aiIlA~G~g~R~~plt~~~~K~ll~i---~g~pli~~~l~~l~~---------------~~~~-~i~vv~~~~----i~ 58 (401)
T 2ggo_A 2 KAFILAAGSGERLEPITHTRPKAFVPI---LSKPLIEYQIEYLRK---------------CGIR-DITVIVSSK----NK 58 (401)
T ss_dssp EEEEECCCCCGGGTTGGGTSCGGGCEE---TTEEHHHHHHHHHHH---------------TTCC-EEEEEECGG----GH
T ss_pred eEEEEcCcCccccCcccCCCCcceeeE---CCEeHHHHHHHHHHH---------------CCCC-EEEEEeCHH----HH
Confidence 57999999999997 4679999999 799999999998764 1211 345555443 77
Q ss_pred HHHhhcCCCCCCCCceEEEEeCCeeeEecCCcccccCCCccccccCCCchhhHHHhhCChHHHHHHCCCeEEEEEcCCCc
Q 016922 198 KYFEGHKYFGLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGVDNA 277 (380)
Q Consensus 198 ~~f~~~~~FGl~~~~V~~f~Q~~~P~~~~~gki~l~~~~~i~~~P~GnGgi~~aL~~~g~l~~l~~~Gi~yi~v~~vDN~ 277 (380)
+++++... .+.+..+ + ..|.|.++.+....+ -+++++...|.+
T Consensus 59 ~~~~~~~~------~i~~~~~----------------~----~~~~g~~~~l~~~~~-----------~~~~lv~~~D~~ 101 (401)
T 2ggo_A 59 EYFEKKLK------EISIVTQ----------------K----DDIKGTGAAILSAKF-----------NDEALIIYGDLF 101 (401)
T ss_dssp HHHHHHCT------TCEEEEC----------------C----TTCCBSTTTGGGCCC-----------SSEEEEEETTEE
T ss_pred HHhhccCC------cEEEEeC----------------C----CCCCChHHHHHHhcc-----------CCCEEEEeCccc
Confidence 77765311 2333221 0 025566655543321 367888899998
Q ss_pred ccccCCHHHHHHHHHhCCceEEEEeecCCCCcccceEEEEcCCCCeEEEEecccChhhhhhhccCCCcceeccccccchh
Q 016922 278 LVRVADPTFLGYFIDKGVSAGAKVVRKAYPQEKVGVFVRRGKGGPLTVVEYSELDPSLASAINQETGRLRFCWSNVCLHM 357 (380)
Q Consensus 278 L~~~~Dp~~lG~~~~~~~d~~~kvv~k~~p~e~vGvl~~~~~~g~~~vvEYsel~~~~~~~~~~~~g~l~f~~gNi~~~~ 357 (380)
+ .+|..+-...+ +++.++-+.+..++ .+.|.+... .+| .+.++.|-+.. + .. ...|+++++
T Consensus 102 ~---~~~~~~~~l~~-~~~~~i~~~~~~~~-~~~~~v~~~-~~g--~v~~~~ek~~~------~---~~--~~~~~Giy~ 162 (401)
T 2ggo_A 102 F---SNEKEICNIIT-LKENAIIGVKVSNP-KDYGVLVLD-NQN--NLSKIIEKPEI------P---PS--NLINAGIYK 162 (401)
T ss_dssp E---SCSHHHHHHTT-CSSEEEEEEECSCC-SSSCEEEEC-TTS--SEEEEECSCSS------C---SC--SEEEEEEEE
T ss_pred c---ccHHHHHHHHH-hcCCEEEEEEcCCC-cceeEEEEC-CCC--eEEEEEECCCC------C---CC--cEEEEEEEE
Confidence 5 33455554444 45666666655554 456777654 345 46666654321 0 01 134667777
Q ss_pred ccHHHHHHH
Q 016922 358 FTLDFLNQV 366 (380)
Q Consensus 358 f~l~fL~~~ 366 (380)
|+.++++.+
T Consensus 163 ~~~~~~~~l 171 (401)
T 2ggo_A 163 LNSDIFTYL 171 (401)
T ss_dssp EETHHHHHH
T ss_pred EcHHHHHHh
Confidence 888777655
No 42
>1qwj_A Cytidine monophospho-N-acetylneuraminic acid synthetase; CMP-5-N-acetylneuraminic acid synthetase, CMP-NEU5AC, sialic acid, glycosylation; HET: NCC; 2.80A {Mus musculus} SCOP: c.68.1.13
Probab=98.27 E-value=6.1e-06 Score=75.57 Aligned_cols=130 Identities=16% Similarity=0.204 Sum_probs=79.3
Q ss_pred CEEEEEecCCCccccCCCCCCccccccCCCCCccHHHHHHHHHHHHHHHHhhhcCCCCCCCCceeEEEEcCCCchHHHHH
Q 016922 119 KLAVLLLSGGQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRK 198 (380)
Q Consensus 119 kvavvlLAGG~GTRLg~~~PKg~~~i~l~s~ksllq~~~e~i~~l~~la~~~~~~~~~~~~~~ip~~IMTS~~t~e~t~~ 198 (380)
++.+||||||.||||+ +|.+.|+ .|||++++.++++.+. +.--.++|-| .++.+.+
T Consensus 3 ~~~aiIlA~G~s~R~~---~K~l~~i---~Gkpli~~~i~~~~~~---------------~~~~~ivv~~---~~~~i~~ 58 (229)
T 1qwj_A 3 HLAALVLARGGSKGIP---LKNIKRL---AGVPLIGWVLRAALDA---------------GVFQSVWVST---DHDEIEN 58 (229)
T ss_dssp CEEEEEECCSCCSSSS---CTTTSEE---TTEEHHHHHHHHHHHH---------------TCCSEEEEEE---SCHHHHH
T ss_pred cEEEEEEcCCCCCCCC---CcccceE---CCEEHHHHHHHHHHhC---------------CCcCEEEEEC---ChHHHHH
Confidence 6889999999999995 5999999 8999999999987641 1101344555 3577888
Q ss_pred HHhhcCCCCCCCCceEEEEeCCeeeEecCCcccccCCCcc-ccccCCCchhhHHHhhCChHHHHHHCCCeEEEEEcCCCc
Q 016922 199 YFEGHKYFGLESDQVTFFQQGTIPCVSKDGRFIMETPYKV-AKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGVDNA 277 (380)
Q Consensus 199 ~f~~~~~FGl~~~~V~~f~Q~~~P~~~~~gki~l~~~~~i-~~~P~GnGgi~~aL~~~g~l~~l~~~Gi~yi~v~~vDN~ 277 (380)
++++ +|+. ++.+ +..+ ...+.|.+.+..++.. + .+.+++++.+.|++
T Consensus 59 ~~~~---~g~~-----~~~~----------------~~~~~~~~~~~~~~v~~al~~------~--~~~d~vlv~~~D~P 106 (229)
T 1qwj_A 59 VAKQ---FGAQ-----VHRR----------------SSETSKDSSTSLDAIVEFLNY------H--NEVDIVGNIQATSP 106 (229)
T ss_dssp HHHH---TTCE-----EEEC----------------CGGGSSTTCCHHHHHHHHHTT------C--TTCSEEEEECTTCT
T ss_pred HHHH---cCCE-----EEeC----------------hhhhcCCCCcHHHHHHHHHHh------c--CCCCEEEEecCCCC
Confidence 8875 3432 2211 0000 1122333344444432 1 24678999999999
Q ss_pred ccccCCHHHH----HHHHHhCCceEEEEeecCCC
Q 016922 278 LVRVADPTFL----GYFIDKGVSAGAKVVRKAYP 307 (380)
Q Consensus 278 L~~~~Dp~~l----G~~~~~~~d~~~kvv~k~~p 307 (380)
|. +|..+ ..+...++++.+.+.+..+|
T Consensus 107 li---~~~~i~~l~~~~~~~~~~~~~~~~~~~~p 137 (229)
T 1qwj_A 107 CL---HPTDLQKVAEMIREEGYDSVFSVVRRHQF 137 (229)
T ss_dssp TC---CHHHHHHHHHHHHSSCCSEEEEEEEECCC
T ss_pred cC---CHHHHHHHHHHHHhCCCCEEEEEeeccCh
Confidence 84 44433 44445567765555544344
No 43
>3q80_A 2-C-methyl-D-erythritol 4-phosphate cytidyltransf; TB structural genomics consortium, TBSGC, rossman fold; HET: CDM; 2.00A {Mycobacterium tuberculosis} SCOP: c.68.1.0 PDB: 3q7u_A* 3okr_A 2xwn_A*
Probab=98.27 E-value=1.9e-05 Score=73.30 Aligned_cols=129 Identities=18% Similarity=0.304 Sum_probs=83.0
Q ss_pred CCEEEEEecCCCccccCCCCCCccccccCCCCCccHHHHHHHHHHHHHHHHhhhcCCCCCCCCceeEEEEcCCCchHHHH
Q 016922 118 GKLAVLLLSGGQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATR 197 (380)
Q Consensus 118 gkvavvlLAGG~GTRLg~~~PKg~~~i~l~s~ksllq~~~e~i~~l~~la~~~~~~~~~~~~~~ip~~IMTS~~t~e~t~ 197 (380)
|++++||||||.|||||.+.||.+.++ .|||++++.++.+.+. ..+ -..+|.|+....+.+.
T Consensus 6 ~~~~aIIlAaG~g~Rmg~~~~K~l~~l---~Gkpll~~~l~~~~~~--------------~~~-~~ivVv~~~~~~~~~~ 67 (231)
T 3q80_A 6 GEVVAIVPAAGSGERLAVGVPKAFYQL---DGQTLIERAVDGLLDS--------------GVV-DTVVVAVPADRTDEAR 67 (231)
T ss_dssp CCEEEEEECCCCCTTTCSSSCGGGCEE---TTEEHHHHHHHHHHHT--------------SCC-CEEEEEECGGGHHHHH
T ss_pred CceEEEEECCCCCccCCCCCCceEEEE---CCeEHHHHHHHHHHhC--------------CCC-CeEEEECChHHHHHHH
Confidence 368999999999999999899999999 8999999999987641 011 1345555554446666
Q ss_pred HHHhhcCCCCCCCCceEEEEeCCeeeEecCCcccccCCCccccccCCC---chhhHHHhhCChHHHHHH-CCCeEEEEEc
Q 016922 198 KYFEGHKYFGLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGN---GGVYSALKSSKLLEDMAT-RGIKYIDCYG 273 (380)
Q Consensus 198 ~~f~~~~~FGl~~~~V~~f~Q~~~P~~~~~gki~l~~~~~i~~~P~Gn---Ggi~~aL~~~g~l~~l~~-~Gi~yi~v~~ 273 (380)
+++.. .+.+. +.|. .+++.+|.. +.. .+.++++|+.
T Consensus 68 ~~~~~---------~v~~v-------------------------~gg~~r~~sv~~gl~~------~~~~~~~d~Vlv~~ 107 (231)
T 3q80_A 68 QILGH---------RAMIV-------------------------AGGSNRTDTVNLALTV------LSGTAEPEFVLVHD 107 (231)
T ss_dssp HHHGG---------GCEEE-------------------------ECCSSHHHHHHHHHGG------GC---CCSEEEECC
T ss_pred HHhcC---------CeEEE-------------------------cCCCchHHHHHHHHHH------hhhcCCCCEEEEEc
Confidence 66643 12221 2222 345555432 111 1357999999
Q ss_pred CCCcccccCCHHHHHHHHH---hCCceEEEEeecCCC
Q 016922 274 VDNALVRVADPTFLGYFID---KGVSAGAKVVRKAYP 307 (380)
Q Consensus 274 vDN~L~~~~Dp~~lG~~~~---~~~d~~~kvv~k~~p 307 (380)
.|-+| ..|..|-.+++ .+.+.++-+++-.++
T Consensus 108 ~d~Pl---i~~~~i~~li~~~~~~~~~~i~~~p~~dt 141 (231)
T 3q80_A 108 AARAL---TPPALVARVVEALRDGYAAVVPVLPLSDT 141 (231)
T ss_dssp TTCTT---CCHHHHHHHHHHHHTTCSEEEEEECCSSC
T ss_pred CCcCC---CCHHHHHHHHHHHhhcCCeEEEEEeccCC
Confidence 99998 46766655433 236666666665544
No 44
>1vgw_A 4-diphosphocytidyl-2C-methyl-D-erythritol synthas; structural genomics, transferase; 2.35A {Neisseria gonorrhoeae} SCOP: c.68.1.13 PDB: 1vgz_A
Probab=98.20 E-value=5.6e-06 Score=75.24 Aligned_cols=41 Identities=27% Similarity=0.410 Sum_probs=28.0
Q ss_pred CCEEEEEecCCCccccCCCCCCccccccCCCCCccHHHHHHHHH
Q 016922 118 GKLAVLLLSGGQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERIL 161 (380)
Q Consensus 118 gkvavvlLAGG~GTRLg~~~PKg~~~i~l~s~ksllq~~~e~i~ 161 (380)
.++.+||||||.|||||.+.||.+.|+ .|||++++.++++.
T Consensus 5 ~~~~aiIlA~G~g~R~~~~~~K~l~~~---~gkpli~~~l~~l~ 45 (231)
T 1vgw_A 5 RKNIALIPAAGIGVRFGADKPKQYVEI---GSKTVLEHVLGIFE 45 (231)
T ss_dssp CCEEEEEECC----------CCSCCEE---TTEEHHHHHHHHHH
T ss_pred CceEEEEEcccccccCCCCCCceEeEE---CCeEHHHHHHHHHH
Confidence 468999999999999997779999999 79999999999876
No 45
>2waw_A MOBA relate protein; unknown function; HET: PGE; 1.60A {Mycobacterium SP}
Probab=98.19 E-value=8.9e-06 Score=71.81 Aligned_cols=111 Identities=17% Similarity=0.110 Sum_probs=71.5
Q ss_pred CEEEEEecCCCccccCCCCCCccccccCCCCCccHHHHHHHHHHHHHHHHhhhcCCCCCCCCce-eEEEEcCCCchHHHH
Q 016922 119 KLAVLLLSGGQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAI-HWYIMTSPFTDDATR 197 (380)
Q Consensus 119 kvavvlLAGG~GTRLg~~~PKg~~~i~l~s~ksllq~~~e~i~~l~~la~~~~~~~~~~~~~~i-p~~IMTS~~t~e~t~ 197 (380)
++.+||||||.||||| .||.+.|+ .|++++++.++++.. .+ + .++|.| .+..+.+.
T Consensus 5 ~~~~iIlA~G~~~R~g--~~K~l~~~---~g~pli~~~l~~l~~---------------~~--~~~i~vv~-~~~~~~~~ 61 (199)
T 2waw_A 5 RVTGVVLAAGYSRRLG--TPKQLLPL---GDTTLLGATLAMARR---------------CP--FDQLIVTL-GGAADEVL 61 (199)
T ss_dssp CEEEEEEESSCCTTTT--SCGGGCEE---TTEEHHHHHHHHHHT---------------SS--CSEEEEEE-CTTHHHHH
T ss_pred ceEEEEECCCCCCCCC--CCEEeCEe---CccCHHHHHHHHHHh---------------CC--CCcEEEEe-CCCHHHHH
Confidence 5889999999999998 69999999 799999999887763 12 2 344544 44456777
Q ss_pred HHHhhcCCCCCCCCceEEEEeCCeeeEecCCcccccCCCccccccCCC-chhhHHHhhCChHHHHHHCCCeEEEEEcCCC
Q 016922 198 KYFEGHKYFGLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGN-GGVYSALKSSKLLEDMATRGIKYIDCYGVDN 276 (380)
Q Consensus 198 ~~f~~~~~FGl~~~~V~~f~Q~~~P~~~~~gki~l~~~~~i~~~P~Gn-Ggi~~aL~~~g~l~~l~~~Gi~yi~v~~vDN 276 (380)
+++++ +|+ .+.. + ...+.|. ++++.++... ..+.+++++...|.
T Consensus 62 ~~~~~---~~~-----~~~~-------~-------------~~~~~g~~~~i~~al~~~-------~~~~~~vlv~~~D~ 106 (199)
T 2waw_A 62 EKVEL---DGL-----DIVL-------V-------------DDAGLGCSSSLKSALTWV-------DPTAEGIVLMLGDQ 106 (199)
T ss_dssp HHSCC---TTS-----EEEE-------C-------------CCCCTTCCCHHHHHHHTS-------CTTCSEEEEEETTC
T ss_pred HHhcc---CCC-----EEEE-------C-------------CCcccCHHHHHHHHHHhh-------hccCCeEEEEeCCc
Confidence 77654 333 1111 0 1123463 4455555321 12568999999999
Q ss_pred cccccCCHHHHHHH
Q 016922 277 ALVRVADPTFLGYF 290 (380)
Q Consensus 277 ~L~~~~Dp~~lG~~ 290 (380)
++ .++..+-..
T Consensus 107 P~---~~~~~i~~l 117 (199)
T 2waw_A 107 PG---ITASAVASL 117 (199)
T ss_dssp TT---CCHHHHHHH
T ss_pred cc---CCHHHHHHH
Confidence 97 345544433
No 46
>2vsh_A TARI, 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; nucleotidyltransferase; HET: 1PE PG4 P6G; 2.00A {Streptococcus pneumoniae} PDB: 2vsi_A*
Probab=98.19 E-value=8.2e-06 Score=74.13 Aligned_cols=66 Identities=17% Similarity=0.218 Sum_probs=39.7
Q ss_pred CEEEEEecCCCccccCC-CCCCccccccCCCCCccHHHHHHHHHHHHHHHHhhhcCCCCCCCCceeEEEEcCCCchHHHH
Q 016922 119 KLAVLLLSGGQGTRLGS-SDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATR 197 (380)
Q Consensus 119 kvavvlLAGG~GTRLg~-~~PKg~~~i~l~s~ksllq~~~e~i~~l~~la~~~~~~~~~~~~~~ip~~IMTS~~t~e~t~ 197 (380)
.+.+||||||.|||||. +.||.+.|+ .|||++++.++++... .+. -..+|.|.....+.+.
T Consensus 2 m~~~iIlA~G~g~R~~~~~~~K~l~~i---~g~pli~~~l~~l~~~--------------~~~-~~i~vv~~~~~~~~~~ 63 (236)
T 2vsh_A 2 MIYAGILAGGTGTRMGISNLPKQFLEL---GDRPILIHTIEKFVLE--------------PSI-EKIVVGVHGDWVSHAE 63 (236)
T ss_dssp CEEEEEEEC-----------CGGGSEE---TTEEHHHHHHHHHHTC--------------TTC-CCEEEEECGGGHHHHH
T ss_pred ceEEEEeCCccccccCCCCCCCeeeee---CCccHHHHHHHHHHcC--------------CCC-CeEEEEeCHHHHHHHH
Confidence 36789999999999986 679999999 7999999999877630 011 1345555544447788
Q ss_pred HHHhh
Q 016922 198 KYFEG 202 (380)
Q Consensus 198 ~~f~~ 202 (380)
+++++
T Consensus 64 ~~~~~ 68 (236)
T 2vsh_A 64 DLVDK 68 (236)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 88865
No 47
>2wee_A MOBA-related protein; unknown function; 1.65A {Mycobacterium tuberculosis H37RV} PDB: 2we9_A 2yes_A
Probab=98.18 E-value=7.8e-06 Score=72.19 Aligned_cols=62 Identities=15% Similarity=0.174 Sum_probs=46.5
Q ss_pred CEEEEEecCCCccccCCCCCCccccccCCCCCccHHHHHHHHHHHHHHHHhhhcCCCCCCCCceeEEEEcCCCchHHHHH
Q 016922 119 KLAVLLLSGGQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRK 198 (380)
Q Consensus 119 kvavvlLAGG~GTRLg~~~PKg~~~i~l~s~ksllq~~~e~i~~l~~la~~~~~~~~~~~~~~ip~~IMTS~~t~e~t~~ 198 (380)
++.+||||||.||||| .||.+.|+ .|+|++++.++++.. .++ -.++|.| .+..+.+.+
T Consensus 5 ~~~~iIlA~G~~~R~g--~~K~l~~~---~g~pll~~~l~~l~~---------------~~~-~~i~vv~-~~~~~~~~~ 62 (197)
T 2wee_A 5 QITGVVLAAGRSNRLG--TPKQLLPY---RDTTVLGATLDVARQ---------------AGF-DQLILTL-GGAASAVRA 62 (197)
T ss_dssp EEEEEEEECCCCTTTS--SCGGGSEE---TTEEHHHHHHHHHHH---------------TTC-SEEEEEE-CTTHHHHHH
T ss_pred ceEEEEECCCCcccCC--CCeEcCee---CCccHHHHHHHHHHh---------------cCC-CcEEEEe-CCCHHHHHH
Confidence 5889999999999997 79999999 799999999988764 121 1344544 444667777
Q ss_pred HHhh
Q 016922 199 YFEG 202 (380)
Q Consensus 199 ~f~~ 202 (380)
++.+
T Consensus 63 ~~~~ 66 (197)
T 2wee_A 63 AMAL 66 (197)
T ss_dssp HSCC
T ss_pred Hhcc
Confidence 7654
No 48
>1vpa_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltran; TM1393, JCSG, joint center for structural GENO PSI, protein structure initiative; HET: CTP; 2.67A {Thermotoga maritima} SCOP: c.68.1.13
Probab=98.11 E-value=9.5e-06 Score=73.94 Aligned_cols=41 Identities=29% Similarity=0.539 Sum_probs=37.2
Q ss_pred CEEEEEecCCCccccCCCCCCccccccCCCCCccHHHHHHHHHH
Q 016922 119 KLAVLLLSGGQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILC 162 (380)
Q Consensus 119 kvavvlLAGG~GTRLg~~~PKg~~~i~l~s~ksllq~~~e~i~~ 162 (380)
.+.+||||||.|||||.+.||.+.|+ .|||++++.++++.+
T Consensus 13 ~~~aiILAaG~s~Rm~~~~~K~l~~i---~Gkpli~~~i~~l~~ 53 (234)
T 1vpa_A 13 MNVAILLAAGKGERMSENVPKQFLEI---EGRMLFEYPLSTFLK 53 (234)
T ss_dssp CEEEEEEECCCCGGGCCSSCGGGCEE---TTEETTHHHHHHHHH
T ss_pred cCeEEEEcCcchhhcCCCCCceEEEE---CCeEHHHHHHHHHHc
Confidence 58899999999999997779999999 799999999998764
No 49
>3ngw_A Molybdopterin-guanine dinucleotide biosynthesis P (MOBA); alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.31A {Archaeoglobus fulgidus}
Probab=98.07 E-value=4e-05 Score=69.81 Aligned_cols=37 Identities=35% Similarity=0.523 Sum_probs=33.4
Q ss_pred EEEEEecCCCccccCCCCCCccccccCCCCCccHHHHHHHHH
Q 016922 120 LAVLLLSGGQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERIL 161 (380)
Q Consensus 120 vavvlLAGG~GTRLg~~~PKg~~~i~l~s~ksllq~~~e~i~ 161 (380)
+.+||||||.|+||| .||.+.++ .|+|++++.++++.
T Consensus 1 m~aiILAgG~s~Rmg--~~K~ll~~---~G~pli~~~~~~l~ 37 (208)
T 3ngw_A 1 MKVAVLVGGVGRRIG--MEKTEVML---CGKKLIEWVLEKYS 37 (208)
T ss_dssp CEEEEECCCCCTTTT--SCGGGCEE---TTEEHHHHHHHHHT
T ss_pred CEEEEECCCchhhCC--CCCcccEE---CCeeHHHHHHHHhc
Confidence 468999999999999 79999999 89999999988765
No 50
>3d5n_A Q97W15_sulso; NESG, SSR125, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.80A {Sulfolobus solfataricus}
Probab=98.05 E-value=1.5e-05 Score=71.46 Aligned_cols=38 Identities=21% Similarity=0.378 Sum_probs=33.9
Q ss_pred CEEEEEecCCCccccCCCCCCccccccCCCCCccHHHHHHHHH
Q 016922 119 KLAVLLLSGGQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERIL 161 (380)
Q Consensus 119 kvavvlLAGG~GTRLg~~~PKg~~~i~l~s~ksllq~~~e~i~ 161 (380)
++.+||||||.|||||. ||.++|+ .|+|++++.++++.
T Consensus 2 ~~~~iIlAgG~g~Rmg~--~K~l~~i---~g~pll~~~l~~l~ 39 (197)
T 3d5n_A 2 NIGVIILAAGEGKRFGG--DKLLAKI---DNTPIIMRTIRIYG 39 (197)
T ss_dssp CEEEEEECSCCTTCCCS--SGGGSBS---SSSBHHHHHHHHTT
T ss_pred ceEEEEECCcCcccCCC--CeeeCEe---CceEHHHHHHHHHH
Confidence 47899999999999985 9999998 79999999888765
No 51
>3rsb_A Adenosylcobinamide-phosphate guanylyltransferase; pyrophosphorylase binding motif, pyrophosphorylase; HET: GTP; 2.80A {Methanocaldococcus jannaschii}
Probab=98.05 E-value=1.1e-05 Score=71.54 Aligned_cols=62 Identities=27% Similarity=0.571 Sum_probs=44.1
Q ss_pred EEEEEecCCCccccCCCCCCccccccCCCCCccHHHHHHHHHHHHHHHHhhhcCCCCCCCCceeEEEEcCCCchHHHHHH
Q 016922 120 LAVLLLSGGQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRKY 199 (380)
Q Consensus 120 vavvlLAGG~GTRLg~~~PKg~~~i~l~s~ksllq~~~e~i~~l~~la~~~~~~~~~~~~~~ip~~IMTS~~t~e~t~~~ 199 (380)
+.+||||||.|||||. .||.+.|+ .|+|++++.++++.+ .++ =..+|.|+. .++.+.++
T Consensus 1 m~aiIlA~G~s~R~~~-~~K~l~~~---~g~pli~~~l~~l~~---------------~~~-~~v~vv~~~-~~~~i~~~ 59 (196)
T 3rsb_A 1 MDALIMAGGKGTRMGG-VEKPLIKL---CGRCLIDYVVSPLLK---------------SKV-NNIFIATSP-NTPKTKEY 59 (196)
T ss_dssp CEEEEEC----CGGGG-SCGGGCEE---TTEEHHHHHHHHHHS---------------SSC-CCEEEECCT-TCHHHHHH
T ss_pred CEEEEECCCCCCcCCC-CCccEEEE---CCEEHHHHHHHHHHH---------------CCC-CEEEEEeCC-ChHHHHHH
Confidence 3579999999999987 79999999 899999999998763 121 134555554 47889999
Q ss_pred Hhh
Q 016922 200 FEG 202 (380)
Q Consensus 200 f~~ 202 (380)
+++
T Consensus 60 ~~~ 62 (196)
T 3rsb_A 60 INS 62 (196)
T ss_dssp HHH
T ss_pred HHh
Confidence 987
No 52
>1i52_A 4-diphosphocytidyl-2-C-methylerythritol synthase; cytidylyltransferase, deoxyxylulose-5-phosphate pathway (DXP isoprenoid biosynthesys, MEP; HET: CTP; 1.50A {Escherichia coli} SCOP: c.68.1.13 PDB: 1ini_A* 1inj_A 1vgt_A 1vgu_A 3n9w_A 1h3m_A
Probab=98.03 E-value=2.3e-05 Score=71.61 Aligned_cols=40 Identities=18% Similarity=0.439 Sum_probs=36.5
Q ss_pred CEEEEEecCCCccccCCCCCCccccccCCCCCccHHHHHHHHH
Q 016922 119 KLAVLLLSGGQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERIL 161 (380)
Q Consensus 119 kvavvlLAGG~GTRLg~~~PKg~~~i~l~s~ksllq~~~e~i~ 161 (380)
++.+||||||.|||||.+.||.+.|+ .|+|++++.++++.
T Consensus 7 ~~~~iIlA~G~g~R~~~~~~K~l~~i---~g~pll~~~i~~l~ 46 (236)
T 1i52_A 7 DVCAVVPAAGFGRRMQTECPKQYLSI---GNQTILEHSVHALL 46 (236)
T ss_dssp CEEEEEEECCCCGGGCCSSCGGGSEE---TTEEHHHHHHHHHH
T ss_pred ceeEEEECCcCccccCCCCCcceeeE---CCEEHHHHHHHHHH
Confidence 58899999999999997789999999 79999999998876
No 53
>1e5k_A Molybdopterin-guanine dinucleotide biosynthesis protein A; molybdopterin nucleotidyl-transferase,; HET: CIT; 1.35A {Escherichia coli} SCOP: c.68.1.8 PDB: 1h4e_A* 1hjl_A* 1hjj_A* 1h4c_A* 1h4d_A* 1fr9_A 1frw_A*
Probab=97.90 E-value=0.00011 Score=66.10 Aligned_cols=39 Identities=31% Similarity=0.656 Sum_probs=35.2
Q ss_pred CEEEEEecCCCccccCCCCCCccccccCCCCCccHHHHHHHHH
Q 016922 119 KLAVLLLSGGQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERIL 161 (380)
Q Consensus 119 kvavvlLAGG~GTRLg~~~PKg~~~i~l~s~ksllq~~~e~i~ 161 (380)
++.+||||||.||||| ..||.++|+ .|+|++++.++++.
T Consensus 6 ~~~~iILAgG~s~Rmg-~~~K~ll~i---~G~pli~~~l~~l~ 44 (201)
T 1e5k_A 6 TITGVVLAGGKARRMG-GVDKGLLEL---NGKPLWQHVADALM 44 (201)
T ss_dssp SEEEEEECCCCCSSSC-SSCGGGSEE---TTEEHHHHHHHHHH
T ss_pred cceEEEEcCCCCCcCC-CCCCceeeE---CceeHHHHHHHHHH
Confidence 5889999999999998 579999999 79999999998775
No 54
>2yc3_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltran chloroplastic; transferase, non-mevalonate-pathway, herbicide, allosteric P; HET: MW5; 1.40A {Arabidopsis thaliana} PDB: 2yc5_A* 1w77_A* 2ycm_A*
Probab=97.85 E-value=1.8e-05 Score=71.78 Aligned_cols=64 Identities=20% Similarity=0.265 Sum_probs=42.3
Q ss_pred CEEEEEecCCCccccCCCCCCccccccCCCCCccHHHHHHHHHHHHHHHHhhhcCCCCCCCCceeEEEEcCCCchHHHHH
Q 016922 119 KLAVLLLSGGQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRK 198 (380)
Q Consensus 119 kvavvlLAGG~GTRLg~~~PKg~~~i~l~s~ksllq~~~e~i~~l~~la~~~~~~~~~~~~~~ip~~IMTS~~t~e~t~~ 198 (380)
++.+||||||.|||||.+.||.+.|+ .|||++++.++++.+. .+ +.-++.+.++.++.+.+
T Consensus 4 ~~~aiIlAaG~g~R~~~~~~K~l~~i---~g~pli~~~l~~l~~~--------------~~--~~~ivvv~~~~~~~~~~ 64 (228)
T 2yc3_A 4 SVSVILLAGGQGKRMKMSMPKQYIPL---LGQPIALYSFFTFSRM--------------PE--VKEIVVVCDPFFRDIFE 64 (228)
T ss_dssp CEEEEEECCCCC-------CGGGSEE---TTEEHHHHHHHHHHHC--------------TT--EEEEEEECCGGGHHHHH
T ss_pred ceEEEEECCccccccCCCCCccEeEE---CCEEHHHHHHHHHHcC--------------CC--CCeEEEEEChHHHHHHH
Confidence 58899999999999997789999999 7999999999887640 02 44455555566656655
Q ss_pred HHh
Q 016922 199 YFE 201 (380)
Q Consensus 199 ~f~ 201 (380)
.+.
T Consensus 65 ~~~ 67 (228)
T 2yc3_A 65 EYE 67 (228)
T ss_dssp TTT
T ss_pred HHH
Confidence 554
No 55
>1w55_A ISPD/ISPF bifunctional enzyme; biosynthetic pathway, isoprenoids, nonmevalonate, transferase; HET: C GPP; 2.3A {Campylobacter jejuni} SCOP: c.68.1.13 d.79.5.1 PDB: 1w57_A*
Probab=97.75 E-value=0.00018 Score=71.45 Aligned_cols=40 Identities=15% Similarity=0.419 Sum_probs=36.4
Q ss_pred CEEEEEecCCCccccCCCCCCccccccCCCCCccHHHHHHHHH
Q 016922 119 KLAVLLLSGGQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERIL 161 (380)
Q Consensus 119 kvavvlLAGG~GTRLg~~~PKg~~~i~l~s~ksllq~~~e~i~ 161 (380)
++++||||||.|||||.+.||.+.|+ .|||++++.++++.
T Consensus 3 ki~aIILAaG~ssRmg~~~pK~ll~l---~GkPLi~~~l~~l~ 42 (371)
T 1w55_A 3 EMSLIMLAAGNSTRFNTKVKKQFLRL---GNDPLWLYATKNLS 42 (371)
T ss_dssp CEEEEEECCSCCTTTCSSSCGGGCEE---BTEEHHHHHHHHHH
T ss_pred ccEEEEECCCCCccCCCCCCcceEEE---CCeEHHHHHHHHHH
Confidence 57899999999999997789999999 79999999998775
No 56
>2e8b_A Probable molybdopterin-guanine dinucleotide biosy protein A; putative protein, molybdenum cofactor, structural G NPPSFA; 1.61A {Aquifex aeolicus}
Probab=97.62 E-value=0.00011 Score=65.86 Aligned_cols=38 Identities=26% Similarity=0.383 Sum_probs=34.3
Q ss_pred CEEEEEecCCCccccCCCCCCccccccCCCCCccHHHHHHHHH
Q 016922 119 KLAVLLLSGGQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERIL 161 (380)
Q Consensus 119 kvavvlLAGG~GTRLg~~~PKg~~~i~l~s~ksllq~~~e~i~ 161 (380)
++.+||||||.||||| .||.+.|+ .|+|++++.++++.
T Consensus 14 ~~~~iILA~G~g~Rmg--~~K~ll~i---~g~pll~~~l~~l~ 51 (201)
T 2e8b_A 14 VNTCYVLAGGKSKRFG--EDKLLYEI---KGKKVIERVYETAK 51 (201)
T ss_dssp CCEEEEEEESSCCCCS--TTHHHHHH---HHHHHHHHHHHHHH
T ss_pred CceEEEECCCCCccCC--CCcccceE---CceEHHHHHHHHHH
Confidence 5789999999999998 79999999 79999999988775
No 57
>2dpw_A Hypothetical protein TTHA0179; transferase, structural genomics, NPPSFA, national project O structural and functional analyses; 2.90A {Thermus thermophilus} SCOP: c.68.1.19
Probab=97.57 E-value=0.00017 Score=65.99 Aligned_cols=40 Identities=23% Similarity=0.503 Sum_probs=32.9
Q ss_pred CEEEEEecCCC---ccccCCCCCCccccccCCCCCccHHHHHHHHHH
Q 016922 119 KLAVLLLSGGQ---GTRLGSSDPKGCVNIGLPSGKSLFQLQAERILC 162 (380)
Q Consensus 119 kvavvlLAGG~---GTRLg~~~PKg~~~i~l~s~ksllq~~~e~i~~ 162 (380)
++.+||||||. |+|+| ..||.+.|+ .|+|++++.++++..
T Consensus 2 ~~~~vIlAaG~tRl~~r~~-~~~K~l~~i---~g~pll~~~l~~l~~ 44 (232)
T 2dpw_A 2 RPSAIVLAGGKEAWAERFG-VGSKALVPY---RGRPMVEWVLEALYA 44 (232)
T ss_dssp CCEEEEECCCBCSGGGTTT-CSBGGGSEE---TTEETHHHHHHHHHH
T ss_pred ceeEEEECCCCCccccccC-CCCceeeEE---CCEEHHHHHHHHHHh
Confidence 46789999999 55554 269999999 799999999998764
No 58
>2xme_A CTP-inositol-1-phosphate cytidylyltransferase; CDP-inositol, DI-MYO-inositol phosphate; 1.89A {Archaeoglobus fulgidus} PDB: 2xmh_A*
Probab=97.41 E-value=0.00014 Score=66.34 Aligned_cols=39 Identities=28% Similarity=0.491 Sum_probs=29.0
Q ss_pred CEEEEEecCCCccccCCCCCCccccccCCCCCccHHHHHHHHH
Q 016922 119 KLAVLLLSGGQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERIL 161 (380)
Q Consensus 119 kvavvlLAGG~GTRLg~~~PKg~~~i~l~s~ksllq~~~e~i~ 161 (380)
++.+|+||||.|||||.. ||.++|+ .|+|++++.++++.
T Consensus 18 ~~~~iIlA~G~g~R~~~~-~K~l~~i---~g~pli~~~l~~l~ 56 (232)
T 2xme_A 18 LMKAVILAAGLGTRLGGV-PKPLVRV---GGCEIILRTMKLLS 56 (232)
T ss_dssp CEEEEEEECC------CC-CGGGCEE---TTEEHHHHHHHHHG
T ss_pred cceEEEECCcCcCcCCCC-CcEEeEE---CCEEHHHHHHHHHH
Confidence 588999999999999754 9999999 79999999988765
No 59
>2px7_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; TTHA0171, ISPD_THET8, ISPD, structural genomics PSI; 2.20A {Thermus thermophilus HB8}
Probab=97.40 E-value=7.8e-05 Score=68.59 Aligned_cols=37 Identities=30% Similarity=0.669 Sum_probs=27.1
Q ss_pred CEEEEEecCCCccccCCCCCCccccccCCCCCccHHHHHHH
Q 016922 119 KLAVLLLSGGQGTRLGSSDPKGCVNIGLPSGKSLFQLQAER 159 (380)
Q Consensus 119 kvavvlLAGG~GTRLg~~~PKg~~~i~l~s~ksllq~~~e~ 159 (380)
++++||||||.|||||.+ ||.+.|+ .|+|++++.+++
T Consensus 25 ~~~aiILAgG~s~Rm~~~-~K~l~~i---~gkpli~~~l~~ 61 (236)
T 2px7_A 25 EVSVLIPAAGNGLRLGRG-PKAFLQV---GGRTLLEWTLAA 61 (236)
T ss_dssp CCEEEEECCC-------C-CGGGCBC---SSSBHHHHHHHH
T ss_pred ceEEEEEcCCCCccCCCC-CCeEEEE---CCEEHHHHHHHh
Confidence 688999999999999976 9999998 799999998886
No 60
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=24.28 E-value=1.1e+02 Score=30.13 Aligned_cols=128 Identities=20% Similarity=0.329 Sum_probs=67.8
Q ss_pred cccCCCCCCccccccCC-CCCccHHHHHHHHHHHHHHHHhhhcCCCCCCCCceeEEEEcCC--------CchHHHHHHHh
Q 016922 131 TRLGSSDPKGCVNIGLP-SGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWYIMTSP--------FTDDATRKYFE 201 (380)
Q Consensus 131 TRLg~~~PKg~~~i~l~-s~ksllq~~~e~i~~l~~la~~~~~~~~~~~~~~ip~~IMTS~--------~t~e~t~~~f~ 201 (380)
+++|...|||.+=.|.| +|||++.-- +|.+ .+ .|++.+... .+...+++.|+
T Consensus 175 ~~~gi~~prGvLL~GPPGTGKTllAkA---------iA~e--------~~--~~f~~v~~s~l~sk~vGese~~vr~lF~ 235 (405)
T 4b4t_J 175 ESLGIAQPKGVILYGPPGTGKTLLARA---------VAHH--------TD--CKFIRVSGAELVQKYIGEGSRMVRELFV 235 (405)
T ss_dssp HHHTCCCCCCEEEESCSSSSHHHHHHH---------HHHH--------HT--CEEEEEEGGGGSCSSTTHHHHHHHHHHH
T ss_pred HhCCCCCCCceEEeCCCCCCHHHHHHH---------HHHh--------hC--CCceEEEhHHhhccccchHHHHHHHHHH
Confidence 56778889999888988 699998432 2222 12 566666543 24556777776
Q ss_pred hcCCCCCCCCceEEEEeCCeeeEecCCcccccCCCccccc--cCCCch---hhHHHhhCChHHHHHH-CCCeEEEEEcCC
Q 016922 202 GHKYFGLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKA--PDGNGG---VYSALKSSKLLEDMAT-RGIKYIDCYGVD 275 (380)
Q Consensus 202 ~~~~FGl~~~~V~~f~Q~~~P~~~~~gki~l~~~~~i~~~--P~GnGg---i~~aL~~~g~l~~l~~-~Gi~yi~v~~vD 275 (380)
.-... .+ -|.|| | +-..+..+ ..++|+ +-..+ +.+|..|.. .+.+-++|+.-+
T Consensus 236 ~Ar~~--aP-~IIFi--------D--------EiDai~~~R~~~~~~~~~~~~~~l--~~lL~~lDg~~~~~~V~vIaAT 294 (405)
T 4b4t_J 236 MAREH--AP-SIIFM--------D--------EIDSIGSTRVEGSGGGDSEVQRTM--LELLNQLDGFETSKNIKIIMAT 294 (405)
T ss_dssp HHHHT--CS-EEEEE--------E--------SSSCCTTSCSCSSSGGGGHHHHHH--HHHHHHHHTTTCCCCEEEEEEE
T ss_pred HHHHh--CC-ceEee--------e--------cchhhccCCCCCCCCCcHHHHHHH--HHHHHhhhccCCCCCeEEEecc
Confidence 42111 00 12222 2 11222211 111222 22222 235555542 244557888899
Q ss_pred CcccccCCHHHHHHHHHhCCceEEEEe
Q 016922 276 NALVRVADPTFLGYFIDKGVSAGAKVV 302 (380)
Q Consensus 276 N~L~~~~Dp~~lG~~~~~~~d~~~kvv 302 (380)
|-. ...||.++ ....+|..+.+.
T Consensus 295 Nrp-d~LDpAll---RpGRfD~~I~i~ 317 (405)
T 4b4t_J 295 NRL-DILDPALL---RPGRIDRKIEFP 317 (405)
T ss_dssp SCS-SSSCHHHH---STTSSCCEEECC
T ss_pred CCh-hhCCHhHc---CCCcCceEEEcC
Confidence 985 78999887 223456555543
Done!