Query 016923
Match_columns 380
No_of_seqs 169 out of 1329
Neff 7.4
Searched_HMMs 29240
Date Mon Mar 25 06:02:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016923.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016923hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2i2j_A Signaling peptide UA159 10.5 1.7E+02 0.0058 16.3 1.9 20 271-290 2-21 (26)
2 4hfv_A Uncharacterized protein 6.6 3.3E+02 0.011 23.4 3.2 40 247-295 102-141 (190)
3 1lbj_A Motilin; A-helix, B-tur 6.1 2.3E+02 0.0079 16.1 1.2 10 163-172 3-12 (26)
4 1rij_A E6APN1 peptide; Trp-CAG 3.9 3.3E+02 0.011 15.1 0.9 7 284-290 6-12 (26)
5 2k60_A Protein (stromal intera 3.1 4.5E+02 0.015 21.7 1.3 23 270-292 63-94 (150)
6 3dvk_B Voltage-dependent R-typ 2.7 3.3E+02 0.011 15.2 0.1 13 268-280 7-19 (23)
7 2lx0_A Membrane fusion protein 2.7 9.6E+02 0.033 13.8 2.1 11 306-316 14-24 (32)
8 2l5y_A Stromal interaction mol 2.6 5.6E+02 0.019 21.1 1.4 23 270-292 63-94 (150)
9 1k8k_G P16, ARP2/3 complex 16 2.6 6.7E+02 0.023 20.7 1.8 28 271-298 89-116 (151)
10 3aqp_A Probable secdf protein- 2.3 3.3E+03 0.11 20.5 7.2 76 304-379 307-390 (741)
No 1
>2i2j_A Signaling peptide UA159SP; helix, signaling protein; NMR {Synthetic}
Probab=10.51 E-value=1.7e+02 Score=16.27 Aligned_cols=20 Identities=30% Similarity=0.529 Sum_probs=14.9
Q ss_pred cchHHHHhhhhhhHHHHhhc
Q 016923 271 HNLETFWKNWHASFNKWLVR 290 (380)
Q Consensus 271 ~s~~~fWr~w~~~l~~Wlr~ 290 (380)
-|++.|.|-+|+++.+=|-+
T Consensus 2 gslstffrlfnrsftqalgk 21 (26)
T 2i2j_A 2 GSLSTFFRLFNRSFTQALGK 21 (26)
T ss_pred ccHHHHHHHHhHHHHHHhcc
Confidence 46788889999888765433
No 2
>4hfv_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, effector, unknown function; HET: CIT; 1.90A {Legionella pneumophila subsp}
Probab=6.60 E-value=3.3e+02 Score=23.42 Aligned_cols=40 Identities=15% Similarity=0.389 Sum_probs=27.8
Q ss_pred HHHHhHhhcCccCCCCCccccccccchHHHHhhhhhhHHHHhhceeeee
Q 016923 247 YFRLWSLICGIEAPENMPRCVNNCHNLETFWKNWHASFNKWLVRYMYIP 295 (380)
Q Consensus 247 ~a~g~a~l~Gi~~p~Nf~~~~~~a~s~~~fWr~w~~~l~~Wlr~YvY~p 295 (380)
+..+.+..+|++- +|.|.+ .|+ ...+..++.++|.+||.|
T Consensus 102 l~~~L~~~l~i~~-en~Pd~-------~Dl-~~~~~Aln~Fmr~~i~~~ 141 (190)
T 4hfv_A 102 FYKSLTISLDLNK-DNNPNR-------EDL-ADMYSALEKFLRSHVYKN 141 (190)
T ss_dssp HHHHHHHHTTCBT-TBCCCH-------HHH-HHHHHHHHHHHHHTTBGG
T ss_pred HHHHHHhhcCCcc-ccCCCH-------HHH-HHHHHHHHHHHHHHHhcC
Confidence 3445567788874 565532 222 446889999999999999
No 3
>1lbj_A Motilin; A-helix, B-turn of type I, hormone/growth factor complex; NMR {Synthetic} SCOP: j.6.1.1
Probab=6.15 E-value=2.3e+02 Score=16.08 Aligned_cols=10 Identities=20% Similarity=0.707 Sum_probs=8.4
Q ss_pred ccccHHHHHH
Q 016923 163 PIISFNAFAS 172 (380)
Q Consensus 163 Pi~~y~~f~~ 172 (380)
||++|+|..+
T Consensus 3 PiFt~selqr 12 (26)
T 1lbj_A 3 PIFTYGELQR 12 (26)
T ss_dssp CTTCHHHHHH
T ss_pred ceeeHHHHHH
Confidence 8999999855
No 4
>1rij_A E6APN1 peptide; Trp-CAGE, E6-binding domain, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.32.1.1
Probab=3.89 E-value=3.3e+02 Score=15.06 Aligned_cols=7 Identities=29% Similarity=0.956 Sum_probs=5.2
Q ss_pred HHHHhhc
Q 016923 284 FNKWLVR 290 (380)
Q Consensus 284 l~~Wlr~ 290 (380)
+.+||+|
T Consensus 6 lgqwlkd 12 (26)
T 1rij_A 6 LGQWLKD 12 (26)
T ss_dssp HHHHHHT
T ss_pred HHHHHHc
Confidence 5678877
No 5
>2k60_A Protein (stromal interaction molecule 1); EF-hand, SAM domain, EF-SAM, STIM1, store operated calcium entry regulator, SOCE; NMR {Homo sapiens}
Probab=3.08 E-value=4.5e+02 Score=21.68 Aligned_cols=23 Identities=35% Similarity=1.009 Sum_probs=17.6
Q ss_pred ccchHHHHhhhhhh---------HHHHhhcee
Q 016923 270 CHNLETFWKNWHAS---------FNKWLVRYM 292 (380)
Q Consensus 270 a~s~~~fWr~w~~~---------l~~Wlr~Yv 292 (380)
--|..|+|++|-.+ +.+||+++|
T Consensus 63 ~Isv~eLw~~W~~s~V~nWTvedV~~WL~~~v 94 (150)
T 2k60_A 63 LISVEDLWKAWKSSEVYNWTVDEVVQWLITYV 94 (150)
T ss_dssp CEEHHHHHHHHHHSHHHHCCHHHHHHHHHHHH
T ss_pred eeeHHHHHHHhccCccccCCHHHHHHHHHHcC
Confidence 45689999999764 347888876
No 6
>3dvk_B Voltage-dependent R-type calcium channel subunit; calmodulin, IQ domain, inactivation, facili calcium-dependent, voltage-gated; 2.30A {Rattus norvegicus} PDB: 3dvm_B
Probab=2.75 E-value=3.3e+02 Score=15.17 Aligned_cols=13 Identities=8% Similarity=0.153 Sum_probs=7.8
Q ss_pred ccccchHHHHhhh
Q 016923 268 NNCHNLETFWKNW 280 (380)
Q Consensus 268 ~~a~s~~~fWr~w 280 (380)
+.+.-+.|+||++
T Consensus 7 YA~llI~d~~r~~ 19 (23)
T 3dvk_B 7 YAAMMIMDYYKQS 19 (26)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3445566777665
No 7
>2lx0_A Membrane fusion protein P14; membrane fusion protein transmembrane domain, P14 fast prote ARCH, micelle-peptide complex, membrane protein; NMR {Synthetic}
Probab=2.74 E-value=9.6e+02 Score=13.81 Aligned_cols=11 Identities=18% Similarity=0.456 Sum_probs=7.4
Q ss_pred HHHHHHHHHHh
Q 016923 306 IWAIFTFVAVW 316 (380)
Q Consensus 306 ~~~tf~~~~~W 316 (380)
.+.||+.-|+|
T Consensus 14 alltflafgfw 24 (32)
T 2lx0_A 14 ALLTFLAFGFW 24 (32)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 35677777777
No 8
>2l5y_A Stromal interaction molecule 2; EF-hand, SAM domain, store OPE calcium entry, signaling protein; NMR {Homo sapiens}
Probab=2.58 E-value=5.6e+02 Score=21.07 Aligned_cols=23 Identities=30% Similarity=0.923 Sum_probs=17.8
Q ss_pred ccchHHHHhhhhhhH---------HHHhhcee
Q 016923 270 CHNLETFWKNWHASF---------NKWLVRYM 292 (380)
Q Consensus 270 a~s~~~fWr~w~~~l---------~~Wlr~Yv 292 (380)
--|..|+|++|-.+- .+||+++|
T Consensus 63 ~Isv~eLw~~W~~s~V~nWTvedV~~WL~~~v 94 (150)
T 2l5y_A 63 HITIEDLWKRWKTSEVHNWTLEDTLQWLIEFV 94 (150)
T ss_dssp CBCHHHHHHHHHTSHHHHCCHHHHHHHHHHHT
T ss_pred eeeHHHHHHHHccCcchhCCHHHHHHHHHHcC
Confidence 457899999997653 48898876
No 9
>1k8k_G P16, ARP2/3 complex 16 kDa subunit, P16-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: a.118.13.1 PDB: 1tyq_G* 1u2v_G* 2p9i_G* 2p9k_G* 2p9l_G 2p9n_G* 2p9p_G* 2p9s_G* 2p9u_G* 3rse_G 3dxm_G* 3dxk_G
Probab=2.58 E-value=6.7e+02 Score=20.67 Aligned_cols=28 Identities=14% Similarity=0.291 Sum_probs=22.6
Q ss_pred cchHHHHhhhhhhHHHHhhceeeeeccC
Q 016923 271 HNLETFWKNWHASFNKWLVRYMYIPLGG 298 (380)
Q Consensus 271 ~s~~~fWr~w~~~l~~Wlr~YvY~pl~g 298 (380)
..+..+.++-+..-...|-+|||.=+..
T Consensus 89 sdI~~~v~~L~~e~~D~LMKYiYkGm~~ 116 (151)
T 1k8k_G 89 NDIEKAVQSLDKNGVDLLMKYIYKGFES 116 (151)
T ss_dssp GGHHHHHHTSCHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHhChhhhhHHHHHHHHhhcC
Confidence 4467777888888999999999988753
No 10
>3aqp_A Probable secdf protein-export membrane protein; translocon, cell membrane, MEM protein transport, translocation, transmembrane, transport; 3.30A {Thermus thermophilus} PDB: 2rrn_A
Probab=2.26 E-value=3.3e+03 Score=20.55 Aligned_cols=76 Identities=8% Similarity=-0.160 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhhchhhhHHHHHHHHHHHHHH-------HHHHHHHHhhhhhhhhcCCchhHHHHHH-HHHHHHHHHHH
Q 016923 304 YNIWAIFTFVAVWHDLEWKLLSWAWLTCLFFIP-------EMVVKSAADSFQAESAFGGFLVRELRAF-AGSITITCLMV 375 (380)
Q Consensus 304 ~~~~~tf~~~~~WHG~~~~~~~w~~~~~~~~~~-------E~~~~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~~~~~ 375 (380)
.+++.++.+.++++..---.-+-|+.-.+++.+ ||.-+...+....++.......+..++. .+.+|...-++
T Consensus 307 ~~i~~~~~~l~l~g~~l~l~~i~glil~iGi~VD~~I~i~eri~e~~~~g~~~~~Ai~~~~~~~~~~Il~s~lTt~i~f~ 386 (741)
T 3aqp_A 307 YTSALILGLLSGLGATLTLPGIAGLVLTLGAAVDGNVLSFERIKEELRAGKKLRQAIPEGFRHSTLTIMDVNIAHLLAAA 386 (741)
T ss_dssp HHHHHHHHHHHHHCCBCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCccHHHHHHHHHHHHHHHhchhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhcc
Q 016923 376 CTSF 379 (380)
Q Consensus 376 ~~~~ 379 (380)
.+++
T Consensus 387 ~L~~ 390 (741)
T 3aqp_A 387 ALYQ 390 (741)
T ss_dssp HHHH
T ss_pred HHHH
Done!