Query 016924
Match_columns 380
No_of_seqs 248 out of 1226
Neff 7.8
Searched_HMMs 46136
Date Fri Mar 29 04:02:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016924.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016924hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0626 Beta-glucosidase, lact 100.0 1E-107 3E-112 804.8 34.6 377 2-380 74-452 (524)
2 PLN02849 beta-glucosidase 100.0 1.8E-99 4E-104 767.6 36.5 358 7-380 67-426 (503)
3 PLN02814 beta-glucosidase 100.0 5.1E-99 1E-103 764.5 37.3 358 7-380 65-426 (504)
4 PLN02998 beta-glucosidase 100.0 1.8E-98 4E-103 759.3 36.4 357 9-380 72-431 (497)
5 COG2723 BglB Beta-glucosidase/ 100.0 2.2E-98 5E-103 734.5 35.3 353 1-380 41-397 (460)
6 PRK13511 6-phospho-beta-galact 100.0 5E-95 1.1E-99 733.5 37.2 351 10-380 45-411 (469)
7 TIGR01233 lacG 6-phospho-beta- 100.0 5.8E-95 1.3E-99 731.5 37.2 349 10-380 44-409 (467)
8 PRK09593 arb 6-phospho-beta-gl 100.0 4.7E-95 1E-99 733.4 36.4 342 10-379 64-410 (478)
9 PRK09589 celA 6-phospho-beta-g 100.0 7.9E-95 1.7E-99 731.4 37.3 342 10-379 58-409 (476)
10 PRK15014 6-phospho-beta-glucos 100.0 1.5E-93 3.2E-98 721.6 38.8 341 10-379 60-410 (477)
11 PF00232 Glyco_hydro_1: Glycos 100.0 4.3E-95 9E-100 734.4 26.8 353 2-379 41-396 (455)
12 PRK09852 cryptic 6-phospho-bet 100.0 4.3E-93 9.4E-98 717.1 36.8 343 10-380 62-408 (474)
13 TIGR03356 BGL beta-galactosida 100.0 8.8E-92 1.9E-96 702.8 36.6 343 2-380 37-379 (427)
14 PF02449 Glyco_hydro_42: Beta- 99.4 1.4E-12 3E-17 129.5 9.4 109 19-133 10-141 (374)
15 PF00150 Cellulase: Cellulase 99.3 6.5E-12 1.4E-16 118.8 9.7 109 20-133 22-134 (281)
16 smart00633 Glyco_10 Glycosyl h 99.3 3.5E-10 7.6E-15 106.4 21.2 82 41-132 2-85 (254)
17 PF07745 Glyco_hydro_53: Glyco 98.8 9.9E-07 2.2E-11 85.6 22.7 207 22-348 27-242 (332)
18 COG1874 LacA Beta-galactosidas 98.5 2E-07 4.3E-12 97.5 8.5 118 21-144 32-176 (673)
19 COG2730 BglC Endoglucanase [Ca 98.3 4.2E-06 9E-11 84.1 9.9 120 13-132 62-193 (407)
20 PRK10150 beta-D-glucuronidase; 98.2 0.00013 2.8E-09 77.1 21.0 94 19-131 313-419 (604)
21 PF01229 Glyco_hydro_39: Glyco 98.2 9.3E-06 2E-10 83.5 9.9 106 21-133 41-168 (486)
22 PF00331 Glyco_hydro_10: Glyco 98.1 0.00069 1.5E-08 66.0 21.4 113 13-132 14-136 (320)
23 PF01301 Glyco_hydro_35: Glyco 97.9 4.8E-05 1E-09 74.0 9.1 107 21-130 26-150 (319)
24 PLN03059 beta-galactosidase; P 97.5 0.00065 1.4E-08 72.8 11.2 99 15-117 50-165 (840)
25 COG3693 XynA Beta-1,4-xylanase 97.4 0.026 5.7E-07 54.1 19.6 85 40-132 67-153 (345)
26 COG3867 Arabinogalactan endo-1 97.3 0.04 8.7E-07 52.2 18.9 240 22-376 66-327 (403)
27 PF01373 Glyco_hydro_14: Glyco 96.9 0.0023 5.1E-08 63.2 7.2 107 18-132 15-152 (402)
28 PF14587 Glyco_hydr_30_2: O-Gl 96.9 0.0095 2.1E-07 58.7 11.1 99 30-132 58-185 (384)
29 PF13204 DUF4038: Protein of u 96.8 0.013 2.8E-07 56.3 11.5 101 25-130 36-156 (289)
30 PF02836 Glyco_hydro_2_C: Glyc 96.8 0.0074 1.6E-07 58.0 9.7 93 17-130 34-132 (298)
31 PLN02803 beta-amylase 96.8 0.0055 1.2E-07 62.2 8.7 106 20-132 108-252 (548)
32 PLN00197 beta-amylase; Provisi 96.7 0.0066 1.4E-07 61.8 9.0 106 20-132 128-272 (573)
33 PLN02161 beta-amylase 96.7 0.009 1.9E-07 60.4 9.2 111 15-132 113-262 (531)
34 PLN02801 beta-amylase 96.6 0.013 2.7E-07 59.4 9.9 97 20-121 38-173 (517)
35 PLN02905 beta-amylase 96.4 0.018 3.8E-07 59.6 9.6 112 15-132 282-432 (702)
36 PLN02705 beta-amylase 96.4 0.016 3.5E-07 59.6 8.8 109 18-132 267-414 (681)
37 PF14488 DUF4434: Domain of un 96.1 0.05 1.1E-06 47.9 9.9 104 20-132 21-132 (166)
38 KOG0496 Beta-galactosidase [Ca 95.8 0.053 1.1E-06 56.5 9.4 98 15-116 40-154 (649)
39 PRK09525 lacZ beta-D-galactosi 94.6 0.14 3.1E-06 57.5 9.3 94 17-131 369-464 (1027)
40 PRK10340 ebgA cryptic beta-D-g 93.9 0.25 5.5E-06 55.5 9.2 91 17-131 353-451 (1021)
41 COG3250 LacZ Beta-galactosidas 92.9 0.68 1.5E-05 50.5 10.4 90 15-131 317-408 (808)
42 COG3664 XynB Beta-xylosidase [ 92.7 0.17 3.6E-06 50.1 4.9 100 28-134 14-118 (428)
43 PF11790 Glyco_hydro_cc: Glyco 91.8 0.43 9.3E-06 44.4 6.4 51 319-377 150-200 (239)
44 PF07488 Glyco_hydro_67M: Glyc 89.8 2.7 5.9E-05 40.3 9.6 87 18-119 56-150 (328)
45 COG3934 Endo-beta-mannanase [C 89.5 0.18 3.9E-06 50.8 1.7 108 22-132 29-150 (587)
46 smart00642 Aamy Alpha-amylase 87.6 1.9 4.1E-05 37.8 6.7 66 15-82 15-91 (166)
47 PF03198 Glyco_hydro_72: Gluca 86.8 4 8.6E-05 39.4 8.7 47 20-82 54-100 (314)
48 PF12891 Glyco_hydro_44: Glyco 85.9 2.6 5.6E-05 39.1 6.8 113 61-200 24-182 (239)
49 PF02638 DUF187: Glycosyl hydr 81.0 8.5 0.00018 37.3 8.6 99 20-118 20-154 (311)
50 PF14871 GHL6: Hypothetical gl 79.8 7.6 0.00016 32.7 6.8 58 24-82 5-65 (132)
51 PLN02361 alpha-amylase 78.3 5.1 0.00011 40.3 6.2 66 16-81 26-96 (401)
52 KOG2233 Alpha-N-acetylglucosam 77.3 8.4 0.00018 39.3 7.2 113 18-130 77-248 (666)
53 PF00128 Alpha-amylase: Alpha 76.4 6.8 0.00015 36.7 6.4 59 22-82 7-73 (316)
54 cd06543 GH18_PF-ChiA-like PF-C 75.4 16 0.00034 35.2 8.5 85 26-119 19-105 (294)
55 cd07945 DRE_TIM_CMS Leptospira 74.6 9.3 0.0002 36.5 6.7 84 20-115 75-158 (280)
56 PLN00196 alpha-amylase; Provis 73.6 6.4 0.00014 40.0 5.6 65 17-81 42-112 (428)
57 PRK09936 hypothetical protein; 72.6 31 0.00066 33.1 9.4 61 22-92 41-101 (296)
58 PRK05402 glycogen branching en 71.2 23 0.0005 38.5 9.5 100 22-124 268-401 (726)
59 PLN02746 hydroxymethylglutaryl 70.9 14 0.00031 36.3 7.2 86 20-115 122-208 (347)
60 PRK12313 glycogen branching en 68.3 28 0.00061 37.2 9.3 97 18-124 169-306 (633)
61 PRK09058 coproporphyrinogen II 68.2 17 0.00037 37.1 7.3 106 21-144 162-270 (449)
62 cd02932 OYE_YqiM_FMN Old yello 67.5 1.3E+02 0.0027 29.4 14.8 32 53-84 69-100 (336)
63 cd03174 DRE_TIM_metallolyase D 67.2 18 0.00038 33.6 6.8 83 22-118 77-159 (265)
64 TIGR02090 LEU1_arch isopropylm 66.8 17 0.00038 36.0 6.9 62 20-82 72-133 (363)
65 TIGR01210 conserved hypothetic 66.7 29 0.00062 33.7 8.2 109 22-145 117-229 (313)
66 cd07939 DRE_TIM_NifV Streptomy 66.6 8.9 0.00019 36.0 4.6 60 21-81 71-130 (259)
67 cd06593 GH31_xylosidase_YicI Y 65.8 46 0.00099 32.0 9.5 106 21-131 26-161 (308)
68 PLN02784 alpha-amylase 65.2 15 0.00033 40.3 6.4 64 16-81 518-588 (894)
69 TIGR02403 trehalose_treC alpha 65.0 11 0.00024 39.5 5.4 67 16-82 24-96 (543)
70 COG1501 Alpha-glucosidases, fa 65.0 28 0.00062 38.1 8.5 102 30-136 293-422 (772)
71 cd06601 GH31_lyase_GLase GLase 64.7 45 0.00098 32.6 9.2 107 25-137 30-141 (332)
72 cd07948 DRE_TIM_HCS Saccharomy 64.7 12 0.00026 35.4 5.0 61 21-82 73-133 (262)
73 PRK05799 coproporphyrinogen II 64.3 15 0.00031 36.5 5.8 97 20-133 97-195 (374)
74 PRK05692 hydroxymethylglutaryl 64.1 24 0.00053 33.7 7.1 87 20-116 80-167 (287)
75 COG1523 PulA Type II secretory 64.0 16 0.00035 39.3 6.4 57 25-81 206-285 (697)
76 TIGR02402 trehalose_TreZ malto 63.7 14 0.0003 38.8 5.8 56 21-82 113-181 (542)
77 COG3589 Uncharacterized conser 63.6 36 0.00078 33.3 8.0 69 25-109 22-90 (360)
78 cd06592 GH31_glucosidase_KIAA1 63.3 41 0.00089 32.3 8.6 105 22-131 33-167 (303)
79 PRK10933 trehalose-6-phosphate 62.6 13 0.00029 38.9 5.4 66 15-82 29-102 (551)
80 PF10566 Glyco_hydro_97: Glyco 62.4 45 0.00097 31.8 8.4 102 14-116 27-149 (273)
81 PRK14041 oxaloacetate decarbox 62.0 32 0.00069 35.4 7.9 56 17-87 88-148 (467)
82 PRK09441 cytoplasmic alpha-amy 61.8 14 0.0003 38.1 5.3 65 18-82 21-102 (479)
83 cd06602 GH31_MGAM_SI_GAA This 60.9 44 0.00095 32.7 8.4 106 22-132 27-168 (339)
84 PRK14706 glycogen branching en 60.5 37 0.0008 36.4 8.3 90 26-118 175-299 (639)
85 PRK07379 coproporphyrinogen II 60.4 35 0.00076 34.2 7.8 105 20-143 113-221 (400)
86 PRK14040 oxaloacetate decarbox 60.1 33 0.00072 36.4 7.8 50 18-82 91-145 (593)
87 PRK09505 malS alpha-amylase; R 60.1 17 0.00037 39.2 5.7 62 21-82 232-313 (683)
88 PF12876 Cellulase-like: Sugar 59.1 5.8 0.00013 30.6 1.6 19 113-131 1-22 (88)
89 PF03659 Glyco_hydro_71: Glyco 58.5 44 0.00095 33.5 8.0 50 20-81 18-67 (386)
90 TIGR02456 treS_nterm trehalose 58.2 16 0.00035 38.2 5.1 64 18-81 27-96 (539)
91 cd07938 DRE_TIM_HMGL 3-hydroxy 57.4 40 0.00086 32.0 7.2 85 21-115 75-160 (274)
92 PF05089 NAGLU: Alpha-N-acetyl 56.6 34 0.00073 33.5 6.6 111 18-130 18-184 (333)
93 PLN02447 1,4-alpha-glucan-bran 56.6 25 0.00054 38.3 6.3 60 24-83 256-322 (758)
94 PRK03705 glycogen debranching 56.6 28 0.0006 37.5 6.6 55 25-82 185-263 (658)
95 cd06600 GH31_MGAM-like This fa 56.0 82 0.0018 30.5 9.4 106 23-133 28-164 (317)
96 PRK12581 oxaloacetate decarbox 55.9 43 0.00092 34.5 7.5 56 17-87 98-158 (468)
97 TIGR00433 bioB biotin syntheta 55.9 32 0.0007 32.6 6.4 55 21-81 122-178 (296)
98 PRK14705 glycogen branching en 55.8 66 0.0014 37.1 9.6 93 25-118 772-897 (1224)
99 PRK10785 maltodextrin glucosid 55.8 24 0.00052 37.5 6.0 60 21-82 181-247 (598)
100 KOG1065 Maltase glucoamylase a 55.7 63 0.0014 35.3 8.9 106 23-135 315-454 (805)
101 PRK04161 tagatose 1,6-diphosph 55.5 66 0.0014 31.4 8.3 58 24-86 112-169 (329)
102 cd02874 GH18_CFLE_spore_hydrol 55.4 58 0.0013 31.2 8.2 92 17-118 7-103 (313)
103 PRK12399 tagatose 1,6-diphosph 55.4 65 0.0014 31.4 8.2 57 25-86 111-167 (324)
104 cd06565 GH20_GcnA-like Glycosy 54.9 62 0.0013 31.1 8.2 72 12-90 7-86 (301)
105 cd06603 GH31_GANC_GANAB_alpha 54.6 70 0.0015 31.3 8.7 110 21-134 26-167 (339)
106 cd06598 GH31_transferase_CtsZ 54.6 99 0.0021 29.9 9.7 109 22-133 27-168 (317)
107 PRK12568 glycogen branching en 54.5 20 0.00043 38.9 5.1 97 21-118 271-401 (730)
108 TIGR03471 HpnJ hopanoid biosyn 54.5 55 0.0012 33.5 8.3 75 22-111 287-363 (472)
109 cd02803 OYE_like_FMN_family Ol 54.4 97 0.0021 29.8 9.6 32 53-84 69-100 (327)
110 PF04646 DUF604: Protein of un 54.4 5.7 0.00012 37.1 0.9 77 65-144 72-148 (255)
111 PRK11858 aksA trans-homoaconit 54.3 43 0.00093 33.4 7.2 59 22-81 78-136 (378)
112 PRK12858 tagatose 1,6-diphosph 54.3 57 0.0012 32.1 7.9 52 25-81 112-163 (340)
113 PRK06294 coproporphyrinogen II 54.2 49 0.0011 32.8 7.6 95 21-133 102-199 (370)
114 TIGR02660 nifV_homocitr homoci 53.8 41 0.00089 33.3 7.0 60 21-81 74-133 (365)
115 TIGR01515 branching_enzym alph 53.8 24 0.00053 37.5 5.7 95 22-118 159-288 (613)
116 cd07937 DRE_TIM_PC_TC_5S Pyruv 53.1 86 0.0019 29.7 8.8 68 21-115 93-160 (275)
117 PRK14511 maltooligosyl trehalo 52.9 24 0.00052 39.0 5.5 56 18-81 19-89 (879)
118 cd06599 GH31_glycosidase_Aec37 52.4 1.3E+02 0.0029 29.0 10.2 110 22-132 32-171 (317)
119 cd06591 GH31_xylosidase_XylS X 51.5 1.1E+02 0.0025 29.5 9.5 110 22-134 27-164 (319)
120 TIGR03217 4OH_2_O_val_ald 4-hy 50.9 1.2E+02 0.0026 29.7 9.6 54 21-89 89-144 (333)
121 TIGR03581 EF_0839 conserved hy 50.7 64 0.0014 29.6 6.9 56 14-79 130-207 (236)
122 PRK14510 putative bifunctional 50.6 21 0.00046 41.2 4.8 57 23-81 191-267 (1221)
123 PF10566 Glyco_hydro_97: Glyco 50.3 26 0.00056 33.4 4.6 68 22-102 109-176 (273)
124 PRK12331 oxaloacetate decarbox 49.6 72 0.0016 32.7 8.0 51 22-87 99-149 (448)
125 TIGR03234 OH-pyruv-isom hydrox 49.5 53 0.0012 30.2 6.7 66 19-87 84-150 (254)
126 PRK05628 coproporphyrinogen II 49.5 72 0.0016 31.5 8.0 96 20-133 106-204 (375)
127 cd02742 GH20_hexosaminidase Be 49.2 57 0.0012 31.3 7.0 64 21-90 18-98 (303)
128 PTZ00445 p36-lilke protein; Pr 48.5 39 0.00085 30.9 5.3 55 25-82 35-99 (219)
129 TIGR01211 ELP3 histone acetylt 48.4 65 0.0014 33.7 7.6 108 21-146 205-317 (522)
130 PF03511 Fanconi_A: Fanconi an 48.3 13 0.00028 26.9 1.7 38 43-84 19-56 (64)
131 TIGR02401 trehalose_TreY malto 48.0 32 0.00069 37.9 5.4 63 19-81 16-85 (825)
132 PF04914 DltD_C: DltD C-termin 46.8 67 0.0015 27.0 6.1 58 60-121 35-92 (130)
133 cd06545 GH18_3CO4_chitinase Th 46.6 69 0.0015 29.7 7.0 74 38-118 26-99 (253)
134 PRK08446 coproporphyrinogen II 46.2 74 0.0016 31.2 7.4 93 21-131 97-192 (350)
135 COG0821 gcpE 1-hydroxy-2-methy 44.2 2E+02 0.0042 28.3 9.5 87 11-113 76-162 (361)
136 cd06542 GH18_EndoS-like Endo-b 44.0 75 0.0016 29.4 6.8 55 60-118 50-104 (255)
137 PLN02960 alpha-amylase 43.8 52 0.0011 36.5 6.2 95 17-118 414-549 (897)
138 TIGR00539 hemN_rel putative ox 42.8 64 0.0014 31.7 6.4 62 20-87 98-162 (360)
139 cd06568 GH20_SpHex_like A subg 42.3 85 0.0018 30.7 7.0 75 11-91 8-102 (329)
140 PRK12677 xylose isomerase; Pro 42.1 2E+02 0.0044 28.7 9.8 72 20-100 32-104 (384)
141 cd07944 DRE_TIM_HOA_like 4-hyd 41.9 60 0.0013 30.6 5.8 65 22-115 85-149 (266)
142 TIGR01232 lacD tagatose 1,6-di 40.9 1.6E+02 0.0035 28.7 8.4 59 24-87 111-169 (325)
143 PRK14507 putative bifunctional 40.8 79 0.0017 37.8 7.4 57 20-84 759-832 (1693)
144 PF02055 Glyco_hydro_30: O-Gly 40.6 73 0.0016 33.1 6.5 103 29-133 110-236 (496)
145 TIGR01108 oadA oxaloacetate de 40.2 1.2E+02 0.0026 32.2 8.2 92 22-132 94-205 (582)
146 PTZ00445 p36-lilke protein; Pr 40.2 47 0.001 30.5 4.4 50 61-114 29-88 (219)
147 PRK08599 coproporphyrinogen II 40.0 1.2E+02 0.0026 30.0 7.9 96 20-133 98-196 (377)
148 cd06570 GH20_chitobiase-like_1 39.7 1.1E+02 0.0024 29.6 7.4 72 12-89 9-93 (311)
149 PRK00366 ispG 4-hydroxy-3-meth 39.6 1.8E+02 0.0039 28.8 8.6 88 11-113 82-169 (360)
150 TIGR02100 glgX_debranch glycog 39.3 79 0.0017 34.3 6.8 56 25-82 190-266 (688)
151 cd04733 OYE_like_2_FMN Old yel 39.3 3.7E+02 0.008 26.1 11.7 31 53-83 74-104 (338)
152 PLN02389 biotin synthase 39.2 88 0.0019 31.3 6.7 57 20-81 176-233 (379)
153 PRK13398 3-deoxy-7-phosphohept 38.1 1.2E+02 0.0026 28.7 7.1 73 14-91 36-108 (266)
154 cd07941 DRE_TIM_LeuA3 Desulfob 37.7 56 0.0012 30.9 4.9 82 22-115 81-162 (273)
155 PRK09856 fructoselysine 3-epim 36.1 45 0.00097 31.1 4.0 60 18-80 89-148 (275)
156 TIGR02104 pulA_typeI pullulana 36.1 85 0.0019 33.4 6.4 23 60-82 228-250 (605)
157 PRK09249 coproporphyrinogen II 35.4 1.4E+02 0.003 30.4 7.7 78 20-115 149-229 (453)
158 COG0366 AmyA Glycosidases [Car 35.3 70 0.0015 32.4 5.5 59 23-83 33-101 (505)
159 cd02933 OYE_like_FMN Old yello 34.8 4.4E+02 0.0096 25.7 16.0 33 53-85 69-101 (338)
160 PRK05660 HemN family oxidoredu 34.7 1.5E+02 0.0033 29.4 7.6 95 20-132 105-202 (378)
161 cd07940 DRE_TIM_IPMS 2-isoprop 34.7 1.5E+02 0.0032 27.8 7.2 79 22-115 72-154 (268)
162 PF01261 AP_endonuc_2: Xylose 34.4 49 0.0011 28.9 3.7 63 18-81 70-132 (213)
163 TIGR00542 hxl6Piso_put hexulos 34.3 75 0.0016 29.8 5.2 60 19-81 94-153 (279)
164 PRK07106 5-aminoimidazole-4-ca 34.3 61 0.0013 32.3 4.5 52 11-80 332-383 (390)
165 PRK08208 coproporphyrinogen II 34.2 1.5E+02 0.0033 30.0 7.6 62 20-87 139-203 (430)
166 cd02929 TMADH_HD_FMN Trimethyl 33.5 4.9E+02 0.011 25.8 13.1 130 53-205 75-231 (370)
167 cd07947 DRE_TIM_Re_CS Clostrid 33.1 71 0.0015 30.4 4.8 63 18-81 73-135 (279)
168 PRK13347 coproporphyrinogen II 33.0 1.5E+02 0.0032 30.2 7.4 87 20-124 150-239 (453)
169 cd07943 DRE_TIM_HOA 4-hydroxy- 32.8 94 0.002 29.1 5.5 47 21-82 87-133 (263)
170 PRK12755 phospho-2-dehydro-3-d 32.7 1.6E+02 0.0035 29.1 7.1 79 14-92 63-156 (353)
171 PF00682 HMGL-like: HMGL-like 32.7 1.5E+02 0.0032 27.0 6.7 80 22-116 66-149 (237)
172 TIGR01212 radical SAM protein, 32.5 1.2E+02 0.0027 29.0 6.4 73 60-145 162-234 (302)
173 cd06525 GH25_Lyc-like Lyc mura 32.5 3.1E+02 0.0068 23.9 8.6 51 23-87 12-62 (184)
174 PRK05904 coproporphyrinogen II 32.4 1.9E+02 0.0041 28.5 7.8 93 21-131 102-197 (353)
175 PRK08255 salicylyl-CoA 5-hydro 32.3 7.1E+02 0.015 27.3 15.0 150 43-218 459-646 (765)
176 PRK07094 biotin synthase; Prov 32.3 74 0.0016 30.6 4.9 57 20-81 127-185 (323)
177 PRK00042 tpiA triosephosphate 32.3 1E+02 0.0022 28.9 5.6 48 25-81 79-126 (250)
178 PRK08195 4-hyroxy-2-oxovalerat 32.0 74 0.0016 31.2 4.8 68 22-119 91-158 (337)
179 PF01055 Glyco_hydro_31: Glyco 31.9 1.6E+02 0.0035 29.6 7.5 108 21-133 45-184 (441)
180 COG0138 PurH AICAR transformyl 31.3 76 0.0017 32.6 4.7 52 11-80 457-508 (515)
181 cd02871 GH18_chitinase_D-like 31.2 1.4E+02 0.0031 28.7 6.6 51 61-118 60-110 (312)
182 smart00729 Elp3 Elongator prot 31.0 2.7E+02 0.0058 23.8 8.0 58 19-81 97-157 (216)
183 PHA02769 hypothetical protein; 30.7 85 0.0018 25.7 4.0 37 60-97 98-134 (154)
184 PF02065 Melibiase: Melibiase; 30.4 3.5E+02 0.0076 27.2 9.3 104 23-129 62-193 (394)
185 COG3534 AbfA Alpha-L-arabinofu 30.3 1.8E+02 0.004 29.7 7.1 95 21-130 50-174 (501)
186 TIGR02635 RhaI_grampos L-rhamn 30.3 2.5E+02 0.0054 28.1 8.2 90 11-120 33-131 (378)
187 TIGR02026 BchE magnesium-proto 30.2 1.9E+02 0.0042 29.8 7.8 62 20-87 285-348 (497)
188 PLN03153 hypothetical protein; 30.2 46 0.00099 34.5 3.0 69 69-146 326-401 (537)
189 cd06562 GH20_HexA_HexB-like Be 30.0 1.4E+02 0.0029 29.4 6.3 72 12-90 9-96 (348)
190 PF13812 PPR_3: Pentatricopept 29.5 32 0.00069 20.4 1.2 15 63-77 20-34 (34)
191 PRK06582 coproporphyrinogen II 28.8 1.8E+02 0.0039 29.0 7.1 95 21-133 110-206 (390)
192 TIGR00538 hemN oxygen-independ 28.7 1.1E+02 0.0023 31.3 5.5 77 21-115 150-229 (455)
193 TIGR01531 glyc_debranch glycog 28.7 2.4E+02 0.0052 33.2 8.5 70 16-91 129-218 (1464)
194 cd06604 GH31_glucosidase_II_Ma 28.6 4.1E+02 0.0088 25.8 9.4 106 21-133 26-163 (339)
195 PRK14566 triosephosphate isome 28.2 1.8E+02 0.0038 27.6 6.4 49 25-82 88-136 (260)
196 cd06589 GH31 The enzymes of gl 28.0 2.1E+02 0.0046 26.7 7.1 90 21-133 26-120 (265)
197 PRK10605 N-ethylmaleimide redu 27.9 6E+02 0.013 25.1 16.4 191 53-269 71-321 (362)
198 TIGR00612 ispG_gcpE 1-hydroxy- 27.8 2.1E+02 0.0045 28.1 6.9 53 61-113 108-160 (346)
199 PRK00230 orotidine 5'-phosphat 27.7 92 0.002 28.6 4.4 61 13-88 7-67 (230)
200 cd06595 GH31_xylosidase_XylS-l 27.7 2.2E+02 0.0047 27.1 7.1 107 25-133 31-163 (292)
201 PRK13523 NADPH dehydrogenase N 27.6 5.9E+02 0.013 24.9 11.8 135 53-212 73-228 (337)
202 TIGR00419 tim triosephosphate 27.4 1.6E+02 0.0035 26.7 5.9 44 25-81 74-117 (205)
203 cd08576 GDPD_like_SMaseD_PLD G 27.3 5.4E+02 0.012 24.4 10.3 110 17-132 5-126 (265)
204 PRK15108 biotin synthase; Prov 27.2 1.6E+02 0.0034 29.0 6.2 57 20-81 134-191 (345)
205 KOG2900 Biotin synthase [Coenz 27.1 1.3E+02 0.0027 28.4 5.0 61 25-93 126-186 (380)
206 TIGR01589 A_thal_3526 uncharac 26.9 81 0.0017 22.5 2.9 36 64-110 19-55 (57)
207 PTZ00333 triosephosphate isome 26.6 1.8E+02 0.0038 27.4 6.1 49 25-82 82-130 (255)
208 PRK13210 putative L-xylulose 5 26.1 1.1E+02 0.0025 28.4 4.9 57 21-81 96-153 (284)
209 COG5520 O-Glycosyl hydrolase [ 26.0 2.3E+02 0.0049 28.2 6.7 91 30-133 77-181 (433)
210 TIGR00355 purH phosphoribosyla 25.8 92 0.002 32.3 4.3 56 11-84 453-509 (511)
211 PRK10426 alpha-glucosidase; Pr 25.8 6.3E+02 0.014 27.2 10.8 108 21-130 223-364 (635)
212 COG2100 Predicted Fe-S oxidore 25.7 3E+02 0.0066 27.1 7.5 86 15-114 197-284 (414)
213 cd00019 AP2Ec AP endonuclease 25.7 3.6E+02 0.0079 25.0 8.3 55 19-80 10-65 (279)
214 PRK12822 phospho-2-dehydro-3-d 25.6 1.5E+02 0.0032 29.3 5.5 77 16-92 64-155 (356)
215 PF07071 DUF1341: Protein of u 25.6 1.7E+02 0.0037 26.6 5.4 67 19-116 135-201 (218)
216 PRK14567 triosephosphate isome 25.5 2E+02 0.0044 27.0 6.3 49 25-82 78-126 (253)
217 PRK09282 pyruvate carboxylase 25.5 2.8E+02 0.0062 29.5 8.1 93 21-132 98-210 (592)
218 TIGR02351 thiH thiazole biosyn 25.5 4.7E+02 0.01 25.8 9.3 100 19-132 159-261 (366)
219 cd00311 TIM Triosephosphate is 25.3 1.8E+02 0.004 27.0 6.0 48 25-81 77-124 (242)
220 COG3661 AguA Alpha-glucuronida 25.3 4.5E+02 0.0098 27.0 8.8 89 19-116 183-276 (684)
221 PF04055 Radical_SAM: Radical 25.1 1.1E+02 0.0023 25.2 4.1 51 22-77 90-143 (166)
222 PRK06256 biotin synthase; Vali 24.9 1.2E+02 0.0026 29.3 5.0 57 20-81 150-207 (336)
223 KOG0470 1,4-alpha-glucan branc 24.8 1E+02 0.0022 33.4 4.5 65 18-83 253-333 (757)
224 TIGR02102 pullulan_Gpos pullul 24.7 1.9E+02 0.0041 33.2 6.9 23 60-82 554-576 (1111)
225 PRK13209 L-xylulose 5-phosphat 24.5 5.7E+02 0.012 23.7 9.7 54 20-79 22-75 (283)
226 PRK11572 copper homeostasis pr 24.4 1.9E+02 0.0041 27.2 5.8 42 18-70 72-113 (248)
227 PF09314 DUF1972: Domain of un 24.4 1.6E+02 0.0034 26.4 5.1 43 70-120 114-156 (185)
228 PRK09389 (R)-citramalate synth 24.3 1.2E+02 0.0027 31.3 5.1 62 21-83 75-136 (488)
229 PF04028 DUF374: Domain of unk 24.2 3.1E+02 0.0067 20.5 6.0 40 26-81 27-66 (74)
230 PRK00881 purH bifunctional pho 24.1 1.4E+02 0.003 31.1 5.2 52 11-80 455-506 (513)
231 cd01335 Radical_SAM Radical SA 23.5 1.2E+02 0.0026 25.7 4.2 58 21-81 87-145 (204)
232 PRK09057 coproporphyrinogen II 23.3 4.7E+02 0.01 25.9 8.8 95 21-133 103-199 (380)
233 PRK12330 oxaloacetate decarbox 23.1 3.2E+02 0.0069 28.5 7.7 24 22-45 100-123 (499)
234 cd06563 GH20_chitobiase-like T 22.9 2.4E+02 0.0051 27.8 6.6 74 11-90 8-112 (357)
235 PRK14565 triosephosphate isome 22.9 2.7E+02 0.0059 25.9 6.5 49 25-82 78-126 (237)
236 COG5309 Exo-beta-1,3-glucanase 22.9 2.8E+02 0.0061 26.4 6.5 53 12-82 56-108 (305)
237 cd01990 Alpha_ANH_like_I This 22.8 3.7E+02 0.0079 23.7 7.3 69 15-85 31-106 (202)
238 PF09713 A_thal_3526: Plant pr 22.7 72 0.0016 22.5 2.0 36 64-110 16-52 (54)
239 TIGR00542 hxl6Piso_put hexulos 22.5 6.2E+02 0.014 23.4 9.4 54 19-78 16-69 (279)
240 PRK10658 putative alpha-glucos 22.5 6.5E+02 0.014 27.2 10.2 102 25-131 289-420 (665)
241 PF10107 Endonuc_Holl: Endonuc 22.2 65 0.0014 27.8 2.1 41 229-273 71-113 (156)
242 PF01624 MutS_I: MutS domain I 22.2 85 0.0019 25.2 2.8 59 15-80 24-83 (113)
243 PRK15108 biotin synthase; Prov 22.1 2.5E+02 0.0055 27.5 6.6 47 26-82 86-132 (345)
244 PLN02925 4-hydroxy-3-methylbut 22.0 2.7E+02 0.0059 30.2 7.0 52 62-114 211-262 (733)
245 cd06564 GH20_DspB_LnbB-like Gl 22.0 3E+02 0.0066 26.6 7.1 73 12-90 8-108 (326)
246 PRK01060 endonuclease IV; Prov 21.9 3.4E+02 0.0073 25.2 7.2 51 20-77 13-63 (281)
247 cd04747 OYE_like_5_FMN Old yel 21.8 7.8E+02 0.017 24.3 14.7 125 53-200 70-220 (361)
248 smart00052 EAL Putative diguan 21.8 2.3E+02 0.005 25.2 5.9 62 12-80 148-209 (241)
249 cd06413 GH25_muramidase_1 Unch 21.8 3.5E+02 0.0077 23.8 7.0 49 23-85 15-63 (191)
250 PRK13209 L-xylulose 5-phosphat 21.1 1.5E+02 0.0032 27.7 4.6 55 20-81 100-158 (283)
251 TIGR00423 radical SAM domain p 21.1 1.4E+02 0.003 28.7 4.4 53 21-81 106-165 (309)
252 PRK08207 coproporphyrinogen II 21.1 3.2E+02 0.007 28.3 7.3 88 21-126 268-358 (488)
253 cd02877 GH18_hevamine_XipI_cla 20.9 2E+02 0.0044 27.4 5.4 34 311-346 234-268 (280)
254 PF11997 DUF3492: Domain of un 20.7 92 0.002 29.4 3.0 26 321-349 185-210 (268)
255 PF03932 CutC: CutC family; I 20.4 1.2E+02 0.0027 27.4 3.6 42 19-71 72-113 (201)
256 PLN02692 alpha-galactosidase 20.3 3E+02 0.0066 27.9 6.7 58 18-86 156-213 (412)
257 PLN02561 triosephosphate isome 20.2 3.1E+02 0.0068 25.8 6.4 48 25-81 81-128 (253)
258 PF11790 Glyco_hydro_cc: Glyco 20.2 3.1E+02 0.0068 25.2 6.5 52 58-126 120-171 (239)
259 PRK09261 phospho-2-dehydro-3-d 20.1 2E+02 0.0044 28.4 5.2 78 15-92 63-155 (349)
No 1
>KOG0626 consensus Beta-glucosidase, lactase phlorizinhydrolase, and related proteins [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.2e-107 Score=804.84 Aligned_cols=377 Identities=56% Similarity=1.053 Sum_probs=344.9
Q ss_pred CccccCCCCCcccCCcccCcHHHHHHHHHcCCCEEEeccccccccccCCCCCCccchHHHHHHHHHHHHHHCCCeEEEEc
Q 016924 2 AEKILDHSNGDVADNFYFRYKEDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTL 81 (380)
Q Consensus 2 ~~~~~~~~~~~~a~~~y~~~~eDi~l~~~lG~~~~R~si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~~tL 81 (380)
||++.+++++|+|||+||+|+|||+|||+||+++||||||||||+|.|...+.+|++||+||+++|++|+++||+|+|||
T Consensus 74 p~~~~~~~ngdva~D~Yh~ykeDv~Lmk~lgv~afRFSIsWSRIlP~G~~~~gVN~~Gi~fY~~LI~eL~~nGI~P~VTL 153 (524)
T KOG0626|consen 74 PGKICDGSNGDVAVDFYHRYKEDVKLMKELGVDAFRFSISWSRILPNGRLTGGVNEAGIQFYNNLIDELLANGIEPFVTL 153 (524)
T ss_pred CcccccCCCCCeechhhhhhHHHHHHHHHcCCCeEEEEeehHhhCCCCCcCCCcCHHHHHHHHHHHHHHHHcCCeEEEEE
Confidence 56778899999999999999999999999999999999999999999954478999999999999999999999999999
Q ss_pred CCCCCcHhHHHhhCCCCChhhHHHHHHHHHHHHHHhCCcCcEEEecCCCccccccccccCccCCCCCCCCCCCCCCCCCC
Q 016924 82 FHWDTPQALEDEYGGFLSPKIVKDFGDYADLCFKEFGDRVKHWITLNEPETVGECGYAKGTKAPGRCSNYIGNCPAGNSA 161 (380)
Q Consensus 82 ~h~~~P~~l~~~~ggw~~~~~~~~f~~ya~~~~~~~~~~v~~w~t~NEp~~~~~~gy~~g~~~Pg~~~~~~~~~~~~~~~ 161 (380)
+|||+|++|+++||||+|+++++.|.+||+.||++|||+||+|+|||||++++..||..|..|||+|+.+..+|..++|+
T Consensus 154 fHwDlPq~LeDeYgGwLn~~ivedF~~yA~~CF~~fGDrVK~WiT~NEP~v~s~~gY~~G~~aPGrCs~~~~~c~~g~s~ 233 (524)
T KOG0626|consen 154 FHWDLPQALEDEYGGWLNPEIVEDFRDYADLCFQEFGDRVKHWITFNEPNVFSIGGYDTGTKAPGRCSKYVGNCSAGNSG 233 (524)
T ss_pred ecCCCCHHHHHHhccccCHHHHHHHHHHHHHHHHHhcccceeeEEecccceeeeehhccCCCCCCCCCcccccCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999887899999999
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHhhcCCCccEEEEecCCccccCCCCHHHHHHHHHHHHHhhccchhccccCCCChhHH
Q 016924 162 TEPYVAAHHLILSHATAVKLYRQNYQASQNGLIGITVSSIWAVPKFPTVASEKAAYRAIDFKFGWIFNPITYGSYPRSMQ 241 (380)
Q Consensus 162 ~~~~~~~h~~l~Aha~a~~~~~~~~~~~~~~~iG~~~~~~~~~P~~~~~~d~~aa~~~~~~~~~~fldpi~~G~YP~~~~ 241 (380)
+++|.|+||||+|||+||++||+.++..|+|+|||+++..|++|.+++++|.+||+|+.+|..+||++|++.|+||+.|+
T Consensus 234 ~epYiv~HNllLAHA~Av~~yr~kyk~~Q~G~IGi~~~~~w~eP~~~s~~D~~Aa~Ra~~F~~gw~l~p~~~GdYP~~Mk 313 (524)
T KOG0626|consen 234 TEPYIVAHNLLLAHAAAVDLYRKKYKKKQGGKIGIALSARWFEPYDDSKEDKEAAERALDFFLGWFLEPLTFGDYPDEMK 313 (524)
T ss_pred CCcchHHHHHHHHHHHHHHHHHHhhhhhcCCeEeEEEeeeeeccCCCChHHHHHHHHHHHhhhhhhhcccccCCcHHHHH
Confidence 99999999999999999999999998889999999999999999999999999999999999999999988999999999
Q ss_pred HHhcccCCCCChhHHhHhcCCcceEEeecccceeeeccCC-CCCCCCcccCCCccccccccCC-CCCCCCCCCCCCccCh
Q 016924 242 HLVGNRLPKFTKSQAEMVKGSVDFLGLNYYTADYAEEVTS-FSNTNFSYTTDSRVNRTKEKNG-FPLGQPTGSDWLSIYP 319 (380)
Q Consensus 242 ~~l~~~lp~~t~~d~~~ik~~~DFiGiNyY~~~~v~~~~~-~~~~~~~~~~~~~~~~~~~~~g-~~~~~~t~~gW~~i~P 319 (380)
+.+++|||.||++|.+++||+.||+|||||++.+|++... .....+....+..+.. ..++ .+.+..+...|..++|
T Consensus 314 ~~vg~rLP~FT~ee~~~lKGS~DFvGiNyYts~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~~~~~~~~~~~~~v~P 391 (524)
T KOG0626|consen 314 ERVGSRLPKFTEEESKLLKGSYDFVGINYYTSRYVKHLKPPPDPSQPGWSTDSGVDW--TLEGNDLIGPKAGSDWLPVYP 391 (524)
T ss_pred HHhcccCCCCCHHHHHHhcCchhhceeehhhhhhhhccCCCCCCCCcccccccceee--eecccccccccccccceeecc
Confidence 9999999999999999999999999999999999997543 2222233444444433 2222 3455667788988999
Q ss_pred HHHHHHHHHHHHHcCCCCEEEeeCCCCCCCCCCCCCCCccCChhHHHHHHHHHHHHHHhhC
Q 016924 320 KGIRELLLYLKKKYNPPPIYITENGVGDVNSSSWPISYALNDTVRVNYYNDHLSYILEAIK 380 (380)
Q Consensus 320 ~gL~~~L~~i~~rY~~ppI~ITENG~~~~d~~~~~~~g~i~D~~Ri~Yl~~hL~~v~~Ai~ 380 (380)
+|||++|++++++|++|||||||||+++.+....+....++|+.||+|++.||.+|+|||.
T Consensus 392 ~Glr~~L~yiK~~Y~np~iyItENG~~d~~~~~~~~~~~l~D~~Ri~Y~~~~L~~~~kAi~ 452 (524)
T KOG0626|consen 392 WGLRKLLNYIKDKYGNPPIYITENGFDDLDGGTKSLEVALKDTKRIEYLQNHLQAVLKAIK 452 (524)
T ss_pred HHHHHHHHHHHhhcCCCcEEEEeCCCCcccccccchhhhhcchHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999998765333455678999999999999999999983
No 2
>PLN02849 beta-glucosidase
Probab=100.00 E-value=1.8e-99 Score=767.57 Aligned_cols=358 Identities=41% Similarity=0.825 Sum_probs=316.4
Q ss_pred CCCCCcccCCcccCcHHHHHHHHHcCCCEEEeccccccccccCCCCCCccchHHHHHHHHHHHHHHCCCeEEEEcCCCCC
Q 016924 7 DHSNGDVADNFYFRYKEDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFHWDT 86 (380)
Q Consensus 7 ~~~~~~~a~~~y~~~~eDi~l~~~lG~~~~R~si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~~tL~h~~~ 86 (380)
++.++++||||||||+|||+|||+||+++|||||+||||+|+| .|.+|++||+||+++|++|+++||+|+|||+|||+
T Consensus 67 ~~~~~~~a~D~YhrY~eDI~Lm~~lG~~aYRfSIsWsRI~P~G--~g~vN~~gl~fY~~lid~l~~~GI~P~VTL~H~dl 144 (503)
T PLN02849 67 NMSNGDIACDGYHKYKEDVKLMVETGLDAFRFSISWSRLIPNG--RGSVNPKGLQFYKNFIQELVKHGIEPHVTLFHYDH 144 (503)
T ss_pred CCCCCCccccHHHhHHHHHHHHHHcCCCeEEEeccHHhcCcCC--CCCCCHHHHHHHHHHHHHHHHcCCeEEEeecCCCC
Confidence 3468899999999999999999999999999999999999998 58999999999999999999999999999999999
Q ss_pred cHhHHHhhCCCCChhhHHHHHHHHHHHHHHhCCcCcEEEecCCCccccccccccCccCCCCCCCCCCCCCCCCCCChhHH
Q 016924 87 PQALEDEYGGFLSPKIVKDFGDYADLCFKEFGDRVKHWITLNEPETVGECGYAKGTKAPGRCSNYIGNCPAGNSATEPYV 166 (380)
Q Consensus 87 P~~l~~~~ggw~~~~~~~~f~~ya~~~~~~~~~~v~~w~t~NEp~~~~~~gy~~g~~~Pg~~~~~~~~~~~~~~~~~~~~ 166 (380)
|+||+++||||+|+++++.|++||+.|+++|||+|++|+|||||++++..||..|.+|||.+......|+.+++.+..++
T Consensus 145 P~~L~~~yGGW~nr~~v~~F~~YA~~~f~~fgDrVk~WiT~NEP~~~~~~gy~~G~~~Pg~~~~~~~~~~~~~~~~~~~~ 224 (503)
T PLN02849 145 PQYLEDDYGGWINRRIIKDFTAYADVCFREFGNHVKFWTTINEANIFTIGGYNDGITPPGRCSSPGRNCSSGNSSTEPYI 224 (503)
T ss_pred cHHHHHhcCCcCCchHHHHHHHHHHHHHHHhcCcCCEEEEecchhhhhhchhhhccCCCCccccccccccccchhHHHHH
Confidence 99999989999999999999999999999999999999999999999999999999999964311123544444567899
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCccEEEEecCCccccCCCCHHHHHHHHHHHHHhhccchhccccCCCChhHHHHhcc
Q 016924 167 AAHHLILSHATAVKLYRQNYQASQNGLIGITVSSIWAVPKFPTVASEKAAYRAIDFKFGWIFNPITYGSYPRSMQHLVGN 246 (380)
Q Consensus 167 ~~h~~l~Aha~a~~~~~~~~~~~~~~~iG~~~~~~~~~P~~~~~~d~~aa~~~~~~~~~~fldpi~~G~YP~~~~~~l~~ 246 (380)
|+||+++|||+||+++|++++..|+++||++++..++||.+++|+|++||++++++.++||+||++.|+||+.|++.+++
T Consensus 225 a~hn~llAHa~A~~~~~~~~~~~~~~~IGi~~~~~~~~P~~~~~~D~~AA~~~~~~~~~~f~dp~~~G~YP~~~~~~l~~ 304 (503)
T PLN02849 225 VGHNLLLAHASVSRLYKQKYKDMQGGSIGFSLFALGFTPSTSSKDDDIATQRAKDFYLGWMLEPLIFGDYPDEMKRTIGS 304 (503)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCEEEEEEECceeecCCCCHHHHHHHHHHHHHhhhhhhHHHhCCCccHHHHHHHhc
Confidence 99999999999999999976545789999999999999999999999999999999999999999999999999999998
Q ss_pred cCCCCChhHHhHhcCCcceEEeecccceeeeccCCCC--CCCCcccCCCccccccccCCCCCCCCCCCCCCccChHHHHH
Q 016924 247 RLPKFTKSQAEMVKGSVDFLGLNYYTADYAEEVTSFS--NTNFSYTTDSRVNRTKEKNGFPLGQPTGSDWLSIYPKGIRE 324 (380)
Q Consensus 247 ~lp~~t~~d~~~ik~~~DFiGiNyY~~~~v~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~~~~t~~gW~~i~P~gL~~ 324 (380)
++|.|+++|+++|++++||||||||++.+|+...... ...+.+. ...+.+....+++||+ |+|+||+.
T Consensus 305 ~lp~~~~~d~~~i~~~~DFlGiNyYt~~~v~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~gw~-i~P~Gl~~ 374 (503)
T PLN02849 305 RLPVFSKEESEQVKGSSDFIGVIHYLAASVTNIKIKPSLSGNPDFY---------SDMGVSLGKFSAFEYA-VAPWAMES 374 (503)
T ss_pred CCCCCCHHHHHHhcCCCCEEEEeccchhhcccCCCCCCCCCCCccc---------cccCCCCCccCCCCCe-EChHHHHH
Confidence 9999999999999999999999999999997532110 0000000 0011222346789995 99999999
Q ss_pred HHHHHHHHcCCCCEEEeeCCCCCCCCCCCCCCCccCChhHHHHHHHHHHHHHHhhC
Q 016924 325 LLLYLKKKYNPPPIYITENGVGDVNSSSWPISYALNDTVRVNYYNDHLSYILEAIK 380 (380)
Q Consensus 325 ~L~~i~~rY~~ppI~ITENG~~~~d~~~~~~~g~i~D~~Ri~Yl~~hL~~v~~Ai~ 380 (380)
+|++++++|++|||||||||++..|+ .+++++|++||+||++||++|++||+
T Consensus 375 ~L~~~~~rY~~pPi~ITENG~~~~d~----~~~~v~D~~Ri~Yl~~hL~~l~~Ai~ 426 (503)
T PLN02849 375 VLEYIKQSYGNPPVYILENGTPMKQD----LQLQQKDTPRIEYLHAYIGAVLKAVR 426 (503)
T ss_pred HHHHHHHhcCCCCEEEeCCCCCccCC----CCCcccCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999889999999998764 46789999999999999999999984
No 3
>PLN02814 beta-glucosidase
Probab=100.00 E-value=5.1e-99 Score=764.45 Aligned_cols=358 Identities=42% Similarity=0.769 Sum_probs=314.1
Q ss_pred CCCCCcccCCcccCcHHHHHHHHHcCCCEEEeccccccccccCCCCCCccchHHHHHHHHHHHHHHCCCeEEEEcCCCCC
Q 016924 7 DHSNGDVADNFYFRYKEDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFHWDT 86 (380)
Q Consensus 7 ~~~~~~~a~~~y~~~~eDi~l~~~lG~~~~R~si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~~tL~h~~~ 86 (380)
+++++++||||||||+|||+|||+||+++|||||+||||+|+| .|.+|++||+||+++|++|+++||+|+|||+|||+
T Consensus 65 ~~~~~~~a~D~Yhry~EDI~L~k~lG~~ayRfSIsWsRI~P~G--~g~~N~~Gl~fY~~lId~l~~~GI~P~VTL~H~dl 142 (504)
T PLN02814 65 NGGNGDIASDGYHKYKEDVKLMAEMGLESFRFSISWSRLIPNG--RGLINPKGLLFYKNLIKELRSHGIEPHVTLYHYDL 142 (504)
T ss_pred CCCCCCccccHHHhhHHHHHHHHHcCCCEEEEeccHhhcCcCC--CCCCCHHHHHHHHHHHHHHHHcCCceEEEecCCCC
Confidence 3568899999999999999999999999999999999999998 58999999999999999999999999999999999
Q ss_pred cHhHHHhhCCCCChhhHHHHHHHHHHHHHHhCCcCcEEEecCCCccccccccccCccCCCCCCCCC-CCCCCCCCCChhH
Q 016924 87 PQALEDEYGGFLSPKIVKDFGDYADLCFKEFGDRVKHWITLNEPETVGECGYAKGTKAPGRCSNYI-GNCPAGNSATEPY 165 (380)
Q Consensus 87 P~~l~~~~ggw~~~~~~~~f~~ya~~~~~~~~~~v~~w~t~NEp~~~~~~gy~~g~~~Pg~~~~~~-~~~~~~~~~~~~~ 165 (380)
|+||+++||||+|+++++.|++||+.|+++|||+|++|+|||||++++..||..|.. ||.++... ..|..+++.++.+
T Consensus 143 P~~L~~~yGGW~n~~~i~~F~~YA~~~f~~fgdrVk~WiT~NEP~~~~~~gy~~G~~-pg~~~~~~~~~~~~~~~~~~~~ 221 (504)
T PLN02814 143 PQSLEDEYGGWINRKIIEDFTAFADVCFREFGEDVKLWTTINEATIFAIGSYGQGIR-YGHCSPNKFINCSTGNSCTETY 221 (504)
T ss_pred CHHHHHhcCCcCChhHHHHHHHHHHHHHHHhCCcCCEEEeccccchhhhcccccCcC-CCCCCcccccccccCcchHHHH
Confidence 999999999999999999999999999999999999999999999999999999985 88654211 1353344456789
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCccEEEEecCCccccCCCCHHHHHHHHHHHHHhhccchhccccCCCChhHHHHhc
Q 016924 166 VAAHHLILSHATAVKLYRQNYQASQNGLIGITVSSIWAVPKFPTVASEKAAYRAIDFKFGWIFNPITYGSYPRSMQHLVG 245 (380)
Q Consensus 166 ~~~h~~l~Aha~a~~~~~~~~~~~~~~~iG~~~~~~~~~P~~~~~~d~~aa~~~~~~~~~~fldpi~~G~YP~~~~~~l~ 245 (380)
+|+||+++|||+||+++|+.++..|+++||++++..+++|++++|+|++||++++++.++||+||++.|+||+.|++.++
T Consensus 222 ~a~hn~llAHa~Av~~~~~~~~~~~~g~IGi~~~~~~~~P~~~~~~D~~Aa~~~~~~~~~~f~dp~~~G~YP~~~~~~l~ 301 (504)
T PLN02814 222 IAGHNMLLAHASASNLYKLKYKSKQRGSIGLSIFAFGLSPYTNSKDDEIATQRAKAFLYGWMLKPLVFGDYPDEMKRTLG 301 (504)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCCeEEEEEeCceeecCCCCHHHHHHHHHHHHHhhhhhhHHHhCCCccHHHHHHHh
Confidence 99999999999999999998766689999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCChhHHhHhcCCcceEEeecccceeeeccCCCCCC---CCcccCCCccccccccCCCCCCCCCCCCCCccChHHH
Q 016924 246 NRLPKFTKSQAEMVKGSVDFLGLNYYTADYAEEVTSFSNT---NFSYTTDSRVNRTKEKNGFPLGQPTGSDWLSIYPKGI 322 (380)
Q Consensus 246 ~~lp~~t~~d~~~ik~~~DFiGiNyY~~~~v~~~~~~~~~---~~~~~~~~~~~~~~~~~g~~~~~~t~~gW~~i~P~gL 322 (380)
+++|.|+++|+++|++++||||||||++.+|+........ ...+...... ...+..+.+++||+ |+|+||
T Consensus 302 ~~lp~~~~~d~~~ikg~~DFiGiNyYt~~~v~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~gWe-i~P~Gl 374 (504)
T PLN02814 302 SRLPVFSEEESEQVKGSSDFVGIIHYTTFYVTNRPAPSIFPSMNEGFFTDMGA------YIISAGNSSFFEFD-ATPWGL 374 (504)
T ss_pred cCCCCCCHHHHHHhcCCCCEEEEcccccceeccCCCCCcccccCCCccccccc------ccCCCCCcCCCCCe-ECcHHH
Confidence 9999999999999999999999999999999753211000 0011000000 00123457889996 999999
Q ss_pred HHHHHHHHHHcCCCCEEEeeCCCCCCCCCCCCCCCccCChhHHHHHHHHHHHHHHhhC
Q 016924 323 RELLLYLKKKYNPPPIYITENGVGDVNSSSWPISYALNDTVRVNYYNDHLSYILEAIK 380 (380)
Q Consensus 323 ~~~L~~i~~rY~~ppI~ITENG~~~~d~~~~~~~g~i~D~~Ri~Yl~~hL~~v~~Ai~ 380 (380)
+.+|++++++|++|||||||||++..+ +|+|+|++||+||++||++|++||+
T Consensus 375 ~~~L~~~~~rY~~ppI~ITENG~~~~~------~g~i~D~~Ri~Yl~~hl~~l~~Ai~ 426 (504)
T PLN02814 375 EGILEHIKQSYNNPPIYILENGMPMKH------DSTLQDTPRVEFIQAYIGAVLNAIK 426 (504)
T ss_pred HHHHHHHHHhcCCCCEEEECCCCCCCC------CCcccCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999988999999999764 4789999999999999999999984
No 4
>PLN02998 beta-glucosidase
Probab=100.00 E-value=1.8e-98 Score=759.33 Aligned_cols=357 Identities=45% Similarity=0.852 Sum_probs=312.5
Q ss_pred CCCcccCCcccCcHHHHHHHHHcCCCEEEeccccccccccCCCCCCccchHHHHHHHHHHHHHHCCCeEEEEcCCCCCcH
Q 016924 9 SNGDVADNFYFRYKEDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFHWDTPQ 88 (380)
Q Consensus 9 ~~~~~a~~~y~~~~eDi~l~~~lG~~~~R~si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~~tL~h~~~P~ 88 (380)
.++++||||||||+|||+|||+||+++|||||+||||+|+| .|.+|++||+||+++|++|+++||+|+|||+|||+|+
T Consensus 72 ~~~~~a~D~Yhry~EDi~lmk~lG~~~YRfSIsWsRI~P~G--~g~vN~~gl~~Y~~lid~L~~~GIeP~VTL~H~dlP~ 149 (497)
T PLN02998 72 AAGNVACDQYHKYKEDVKLMADMGLEAYRFSISWSRLLPSG--RGPINPKGLQYYNNLIDELITHGIQPHVTLHHFDLPQ 149 (497)
T ss_pred CCCcccccHHHhhHHHHHHHHHcCCCeEEeeccHHhcCcCC--CCCcCHHHHHHHHHHHHHHHHcCCceEEEecCCCCCH
Confidence 48899999999999999999999999999999999999998 5889999999999999999999999999999999999
Q ss_pred hHHHhhCCCCChhhHHHHHHHHHHHHHHhCCcCcEEEecCCCccccccccccCccCCCCCCCCCC-CCCCCCCCChhHHH
Q 016924 89 ALEDEYGGFLSPKIVKDFGDYADLCFKEFGDRVKHWITLNEPETVGECGYAKGTKAPGRCSNYIG-NCPAGNSATEPYVA 167 (380)
Q Consensus 89 ~l~~~~ggw~~~~~~~~f~~ya~~~~~~~~~~v~~w~t~NEp~~~~~~gy~~g~~~Pg~~~~~~~-~~~~~~~~~~~~~~ 167 (380)
||+++||||+|+++++.|++||+.|+++|||+|++|+|||||++++..||..|.+|||.+....+ .|..+++.++.++|
T Consensus 150 ~L~~~yGGW~n~~~v~~F~~YA~~~~~~fgdrVk~WiT~NEP~~~~~~gy~~G~~~Pg~~~~~~~~~~~~~~~~~~~~~~ 229 (497)
T PLN02998 150 ALEDEYGGWLSQEIVRDFTAYADTCFKEFGDRVSHWTTINEVNVFALGGYDQGITPPARCSPPFGLNCTKGNSSIEPYIA 229 (497)
T ss_pred HHHHhhCCcCCchHHHHHHHHHHHHHHHhcCcCCEEEEccCcchhhhcchhhcccCCCccccccccccccccchHHHHHH
Confidence 99998999999999999999999999999999999999999999999999999999996432111 35544555678999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCccEEEEecCCccccCCCCHHHHHHHHHHHHHhhccchhccccCCCChhHHHHhccc
Q 016924 168 AHHLILSHATAVKLYRQNYQASQNGLIGITVSSIWAVPKFPTVASEKAAYRAIDFKFGWIFNPITYGSYPRSMQHLVGNR 247 (380)
Q Consensus 168 ~h~~l~Aha~a~~~~~~~~~~~~~~~iG~~~~~~~~~P~~~~~~d~~aa~~~~~~~~~~fldpi~~G~YP~~~~~~l~~~ 247 (380)
+||+++|||+||+++|+.++..++++||++++..+++|.+++|+|++||++++++.++||+||++.|+||+.|++.++++
T Consensus 230 ~hn~llAHa~A~~~~~~~~~~~~~g~IGi~~~~~~~~P~~~~~~D~~aa~~~~~~~~~~f~dp~~~G~YP~~~~~~l~~~ 309 (497)
T PLN02998 230 VHNMLLAHASATILYKQQYKYKQHGSVGISVYTYGAVPLTNSVKDKQATARVNDFYIGWILHPLVFGDYPETMKTNVGSR 309 (497)
T ss_pred HHHHHHHHHHHHHHHHHhhccCCCCcEEEEEeCCeeecCCCCHHHHHHHHHHHHHHhhhhhhHHhCCCcCHHHHHHHhcC
Confidence 99999999999999999876558899999999999999999999999999999999999999999999999999999989
Q ss_pred CCCCChhHHhHhcCCcceEEeecccceeeeccCCC-CCCCCcccCCCccccccccCCCCCCCCC-CCCCCccChHHHHHH
Q 016924 248 LPKFTKSQAEMVKGSVDFLGLNYYTADYAEEVTSF-SNTNFSYTTDSRVNRTKEKNGFPLGQPT-GSDWLSIYPKGIREL 325 (380)
Q Consensus 248 lp~~t~~d~~~ik~~~DFiGiNyY~~~~v~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~t-~~gW~~i~P~gL~~~ 325 (380)
+|.|+++|+++|++++||||||||++.+|+..... ......+..+..... .+.++.+ .++|+ |+|+||+.+
T Consensus 310 lp~~t~~d~~~i~~~~DFlGiNyYts~~v~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~w~-i~P~Gl~~~ 382 (497)
T PLN02998 310 LPAFTEEESEQVKGAFDFVGVINYMALYVKDNSSSLKPNLQDFNTDIAVEM------TLVGNTSIENEYA-NTPWSLQQI 382 (497)
T ss_pred CCCCCHHHHHHhcCCCCEEEEchhcCcccccCCCcCCCCcccccccccccc------ccCCCcCCCCCCE-EChHHHHHH
Confidence 99999999999999999999999999999753211 000000101100000 0111233 47885 999999999
Q ss_pred HHHHHHHcCCCCEEEeeCCCCCCCCCCCCCCCccCChhHHHHHHHHHHHHHHhhC
Q 016924 326 LLYLKKKYNPPPIYITENGVGDVNSSSWPISYALNDTVRVNYYNDHLSYILEAIK 380 (380)
Q Consensus 326 L~~i~~rY~~ppI~ITENG~~~~d~~~~~~~g~i~D~~Ri~Yl~~hL~~v~~Ai~ 380 (380)
|+++++||++|||||||||+++.+ +|+|+|++||+||++||++|++||+
T Consensus 383 L~~~~~rY~~ppI~ITENG~~~~~------~g~v~D~~Ri~Yl~~hl~~~~kAi~ 431 (497)
T PLN02998 383 LLYVKETYGNPPVYILENGQMTPH------SSSLVDTTRVKYLSSYIKAVLHSLR 431 (497)
T ss_pred HHHHHHHcCCCCEEEeCCCCccCC------CCcccCHHHHHHHHHHHHHHHHHHH
Confidence 999999999988999999999753 4789999999999999999999984
No 5
>COG2723 BglB Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.2e-98 Score=734.51 Aligned_cols=353 Identities=36% Similarity=0.665 Sum_probs=313.3
Q ss_pred CCccccCCCCCcccCCcccCcHHHHHHHHHcCCCEEEeccccccccccCCCCCCccchHHHHHHHHHHHHHHCCCeEEEE
Q 016924 1 MAEKILDHSNGDVADNFYFRYKEDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVT 80 (380)
Q Consensus 1 ~~~~~~~~~~~~~a~~~y~~~~eDi~l~~~lG~~~~R~si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~~t 80 (380)
+|+++..+.++++||||||||+|||+|||+||+|+|||||+||||+|++. .+.+|++||+||+++||+|+++||+|+||
T Consensus 41 ~~~~~~~~~~~~~a~d~YhrYkeDi~L~~emG~~~~R~SI~WsRIfP~g~-~~e~N~~gl~fY~~l~del~~~gIep~vT 119 (460)
T COG2723 41 IPGRLVSGDPPEEASDFYHRYKEDIALAKEMGLNAFRTSIEWSRIFPNGD-GGEVNEKGLRFYDRLFDELKARGIEPFVT 119 (460)
T ss_pred cCCcccCCCCCccccchhhhhHHHHHHHHHcCCCEEEeeeeEEEeecCCC-CCCcCHHHHHHHHHHHHHHHHcCCEEEEE
Confidence 36777788999999999999999999999999999999999999999984 23899999999999999999999999999
Q ss_pred cCCCCCcHhHHHhhCCCCChhhHHHHHHHHHHHHHHhCCcCcEEEecCCCccccccccccCccCCCCCCCCCCCCCCCCC
Q 016924 81 LFHWDTPQALEDEYGGFLSPKIVKDFGDYADLCFKEFGDRVKHWITLNEPETVGECGYAKGTKAPGRCSNYIGNCPAGNS 160 (380)
Q Consensus 81 L~h~~~P~~l~~~~ggw~~~~~~~~f~~ya~~~~~~~~~~v~~w~t~NEp~~~~~~gy~~g~~~Pg~~~~~~~~~~~~~~ 160 (380)
|+|||+|+||+++||||.||++++.|++||+.||++|||+|++|+||||||+++..||+.|.+||+..+
T Consensus 120 L~Hfd~P~~L~~~ygGW~nR~~i~~F~~ya~~vf~~f~dkVk~W~TFNE~n~~~~~~y~~~~~~p~~~~----------- 188 (460)
T COG2723 120 LYHFDLPLWLQKPYGGWENRETVDAFARYAATVFERFGDKVKYWFTFNEPNVVVELGYLYGGHPPGIVD----------- 188 (460)
T ss_pred ecccCCcHHHhhccCCccCHHHHHHHHHHHHHHHHHhcCcceEEEEecchhhhhcccccccccCCCccC-----------
Confidence 999999999999999999999999999999999999999999999999999999999999999999764
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHhhcCCCccEEEEecCCccccCCCCHHHHHHHHHHHHHhhccchhccccCCCChhH
Q 016924 161 ATEPYVAAHHLILSHATAVKLYRQNYQASQNGLIGITVSSIWAVPKFPTVASEKAAYRAIDFKFGWIFNPITYGSYPRSM 240 (380)
Q Consensus 161 ~~~~~~~~h~~l~Aha~a~~~~~~~~~~~~~~~iG~~~~~~~~~P~~~~~~d~~aa~~~~~~~~~~fldpi~~G~YP~~~ 240 (380)
.+.++||+||+++|||+||+++|+.. ++.+||++++..+.||.+++|+|+.||+.++.+.+++|+||+++|.||..+
T Consensus 189 ~~~~~qa~hh~~lA~A~avk~~~~~~---~~~kIG~~~~~~p~YP~s~~p~dv~aA~~~~~~~n~~FlD~~~~G~yp~~~ 265 (460)
T COG2723 189 PKAAYQVAHHMLLAHALAVKAIKKIN---PKGKVGIILNLTPAYPLSDKPEDVKAAENADRFHNRFFLDAQVKGEYPEYL 265 (460)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhC---CcCceEEEeccCcCCCCCCCHHHHHHHHHHHHHhhhhhcchhhcCcCCHHH
Confidence 47899999999999999999999985 444999999999999999999999999999999999999999999999999
Q ss_pred HHHhccc--CCCCChhHHhHhcC-CcceEEeecccc-eeeeccCCCCCCCCcccCCCccccccccCCCCCCCCCCCCCCc
Q 016924 241 QHLVGNR--LPKFTKSQAEMVKG-SVDFLGLNYYTA-DYAEEVTSFSNTNFSYTTDSRVNRTKEKNGFPLGQPTGSDWLS 316 (380)
Q Consensus 241 ~~~l~~~--lp~~t~~d~~~ik~-~~DFiGiNyY~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~t~~gW~~ 316 (380)
.+.+++. +|.++++|+++|+. ++||||||||++ .+++...... ..+...... ..--+|..+.++|||+
T Consensus 266 ~~~~~~~~~~~~~~~~Dl~~lk~~~~DfiG~NYY~~s~v~~~~~~~~---~~~~~~~~~----~~~~~p~~~~sdwGWe- 337 (460)
T COG2723 266 EKELEENGILPEIEDGDLEILKENTVDFIGLNYYTPSRVKAAEPRYV---SGYGPGGFF----TSVPNPGLEVSDWGWE- 337 (460)
T ss_pred HHHHHhcCCCcccCcchHHHHhcCCCCeEEEeeeeeeeEeeccCCcC---Ccccccccc----cccCCCCCcccCCCce-
Confidence 9999764 79999999999986 699999999995 4444432210 111111000 1111456678899996
Q ss_pred cChHHHHHHHHHHHHHcCCCCEEEeeCCCCCCCCCCCCCCCccCChhHHHHHHHHHHHHHHhhC
Q 016924 317 IYPKGIRELLLYLKKKYNPPPIYITENGVGDVNSSSWPISYALNDTVRVNYYNDHLSYILEAIK 380 (380)
Q Consensus 317 i~P~gL~~~L~~i~~rY~~ppI~ITENG~~~~d~~~~~~~g~i~D~~Ri~Yl~~hL~~v~~Ai~ 380 (380)
|+|+|||.+|+++++||+ +||||||||++..|+ +..++ |+|++||+||++||.+|++||+
T Consensus 338 I~P~GL~~~l~~~~~rY~-~p~fItENG~G~~d~--~~~~~-i~DdyRI~Yl~~Hl~~v~~AI~ 397 (460)
T COG2723 338 IYPKGLYDILEKLYERYG-IPLFITENGLGVKDE--VDFDG-INDDYRIDYLKEHLKAVKKAIE 397 (460)
T ss_pred eChHHHHHHHHHHHHHhC-CCeEEecCCCCcccc--cccCC-cCchHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999 569999999999887 33344 9999999999999999999994
No 6
>PRK13511 6-phospho-beta-galactosidase; Provisional
Probab=100.00 E-value=5e-95 Score=733.55 Aligned_cols=351 Identities=33% Similarity=0.575 Sum_probs=302.2
Q ss_pred CCcccCCcccCcHHHHHHHHHcCCCEEEeccccccccccCCCCCCccchHHHHHHHHHHHHHHCCCeEEEEcCCCCCcHh
Q 016924 10 NGDVADNFYFRYKEDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFHWDTPQA 89 (380)
Q Consensus 10 ~~~~a~~~y~~~~eDi~l~~~lG~~~~R~si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~~tL~h~~~P~~ 89 (380)
++++||||||||+|||+|||+||+++|||||+||||+|++ .|.+|++||+||+++|++|+++||+|+|||+|||+|+|
T Consensus 45 ~~~~a~d~Y~ry~eDi~L~~~lG~~~yRfSIsWsRI~P~G--~g~vN~~gl~~Y~~lid~l~~~GI~P~VTL~H~dlP~~ 122 (469)
T PRK13511 45 TPDPASDFYHRYPEDLKLAEEFGVNGIRISIAWSRIFPDG--YGEVNPKGVEYYHRLFAECHKRHVEPFVTLHHFDTPEA 122 (469)
T ss_pred CCCcccchhhhhHHHHHHHHHhCCCEEEeeccHhhcCcCC--CCCcCHHHHHHHHHHHHHHHHcCCEEEEEecCCCCcHH
Confidence 7899999999999999999999999999999999999998 58999999999999999999999999999999999999
Q ss_pred HHHhhCCCCChhhHHHHHHHHHHHHHHhCCcCcEEEecCCCccccccccccCccCCCCCCCCCCCCCCCCCCChhHHHHH
Q 016924 90 LEDEYGGFLSPKIVKDFGDYADLCFKEFGDRVKHWITLNEPETVGECGYAKGTKAPGRCSNYIGNCPAGNSATEPYVAAH 169 (380)
Q Consensus 90 l~~~~ggw~~~~~~~~f~~ya~~~~~~~~~~v~~w~t~NEp~~~~~~gy~~g~~~Pg~~~~~~~~~~~~~~~~~~~~~~h 169 (380)
|+++ |||+|+++++.|++||+.||++||| |++|+|||||++++..||..|.+|||.+.. .+..++++|
T Consensus 123 L~~~-GGW~n~~~v~~F~~YA~~~~~~fgd-Vk~W~T~NEP~~~~~~gy~~G~~~Pg~~~~----------~~~~~~~~h 190 (469)
T PRK13511 123 LHSN-GDWLNRENIDHFVRYAEFCFEEFPE-VKYWTTFNEIGPIGDGQYLVGKFPPGIKYD----------LAKVFQSHH 190 (469)
T ss_pred HHHc-CCCCCHHHHHHHHHHHHHHHHHhCC-CCEEEEccchhhhhhcchhhcccCCCCCcc----------HHHHHHHHH
Confidence 9986 9999999999999999999999999 999999999999999999999999996421 246899999
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCccEEEEecCCccccCC-CCHHHHHHHHHHHHHhhccchhccccCCCChhHHHHhcc--
Q 016924 170 HLILSHATAVKLYRQNYQASQNGLIGITVSSIWAVPKF-PTVASEKAAYRAIDFKFGWIFNPITYGSYPRSMQHLVGN-- 246 (380)
Q Consensus 170 ~~l~Aha~a~~~~~~~~~~~~~~~iG~~~~~~~~~P~~-~~~~d~~aa~~~~~~~~~~fldpi~~G~YP~~~~~~l~~-- 246 (380)
|+++|||+||+++|+.. ++++||++++..+++|.+ ++|+|++||+++++|.++||+||+++|+||+.|++.++.
T Consensus 191 n~llAHa~A~~~~~~~~---~~g~IGi~~~~~~~~P~~~~~~~d~~aa~~~~~~~~~~f~dp~~~G~Yp~~~~~~~~~~~ 267 (469)
T PRK13511 191 NMMVAHARAVKLFKDKG---YKGEIGVVHALPTKYPIDPDNPEDVRAAELEDIIHNKFILDATYLGYYSEETMEGVNHIL 267 (469)
T ss_pred HHHHHHHHHHHHHHHhC---CCCeEEEEecCceEeeCCCCCHHHHHHHHHHHHHhhhcccchhhCCCCCHHHHHHHHHhh
Confidence 99999999999999963 789999999999999999 899999999999999999999999999999999997741
Q ss_pred ----cCCCCChhHHhHhcC---CcceEEeecccceeeeccCCCCCCCCcccCCCcc-----ccccccCCCCCCCCCCCCC
Q 016924 247 ----RLPKFTKSQAEMVKG---SVDFLGLNYYTADYAEEVTSFSNTNFSYTTDSRV-----NRTKEKNGFPLGQPTGSDW 314 (380)
Q Consensus 247 ----~lp~~t~~d~~~ik~---~~DFiGiNyY~~~~v~~~~~~~~~~~~~~~~~~~-----~~~~~~~g~~~~~~t~~gW 314 (380)
..|.||++|+++|++ ++||||||||++.+|+.................. .........+..+.+++||
T Consensus 268 ~~~~~~l~~t~~d~~~ik~~~~~~DFiGiNyYt~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gw 347 (469)
T PRK13511 268 EANGGSLDIRDEDFEILKAAKDLNDFLGINYYMSDWMRAYDGETEIIHNGTGEKGSSKYQLKGVGERVKPPDVPTTDWDW 347 (469)
T ss_pred hhcCCCCCCCHHHHHHHhcCCCCCCEEEechhhcceeecCCCccccccCCCCccccccccccCccccccCCCCCcCCCCC
Confidence 224799999999964 6899999999999998532110000000000000 0000000112335688999
Q ss_pred CccChHHHHHHHHHHHHHcCC-CCEEEeeCCCCCCCCCCCCCCCccCChhHHHHHHHHHHHHHHhhC
Q 016924 315 LSIYPKGIRELLLYLKKKYNP-PPIYITENGVGDVNSSSWPISYALNDTVRVNYYNDHLSYILEAIK 380 (380)
Q Consensus 315 ~~i~P~gL~~~L~~i~~rY~~-ppI~ITENG~~~~d~~~~~~~g~i~D~~Ri~Yl~~hL~~v~~Ai~ 380 (380)
+ |+|+||+.+|++++++|++ |||||||||++..++ ++.+++|+|++||+||++||++|++||+
T Consensus 348 ~-i~P~Gl~~~l~~~~~~Y~~~~pi~ITENG~~~~d~--~~~~~~~~D~~Ri~yl~~hl~~~~~Ai~ 411 (469)
T PRK13511 348 I-IYPQGLYDQLMRIKKDYPNYKKIYITENGLGYKDE--FVDGKTVDDDKRIDYVKQHLEVISDAIS 411 (469)
T ss_pred e-ECcHHHHHHHHHHHHHcCCCCCEEEecCCcCCCCC--cCCCCccCCHHHHHHHHHHHHHHHHHHH
Confidence 6 9999999999999999997 679999999998765 4456789999999999999999999984
No 7
>TIGR01233 lacG 6-phospho-beta-galactosidase. This enzyme is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=100.00 E-value=5.8e-95 Score=731.51 Aligned_cols=349 Identities=32% Similarity=0.590 Sum_probs=301.4
Q ss_pred CCcccCCcccCcHHHHHHHHHcCCCEEEeccccccccccCCCCCCccchHHHHHHHHHHHHHHCCCeEEEEcCCCCCcHh
Q 016924 10 NGDVADNFYFRYKEDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFHWDTPQA 89 (380)
Q Consensus 10 ~~~~a~~~y~~~~eDi~l~~~lG~~~~R~si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~~tL~h~~~P~~ 89 (380)
++++||||||||+|||+|||+||+++|||||+||||+|++ .|.+|++||+||+++|++|+++||+|+|||+|||+|+|
T Consensus 44 ~~~~a~d~yhry~eDi~L~~~lG~~~yRfSIsWsRI~P~g--~~~~N~~gl~~Y~~lid~l~~~GI~P~VTL~H~dlP~~ 121 (467)
T TIGR01233 44 TAEPASDFYHKYPVDLELAEEYGVNGIRISIAWSRIFPTG--YGEVNEKGVEFYHKLFAECHKRHVEPFVTLHHFDTPEA 121 (467)
T ss_pred CCCccCchhhhHHHHHHHHHHcCCCEEEEecchhhccCCC--CCCcCHHHHHHHHHHHHHHHHcCCEEEEeccCCCCcHH
Confidence 6799999999999999999999999999999999999998 58999999999999999999999999999999999999
Q ss_pred HHHhhCCCCChhhHHHHHHHHHHHHHHhCCcCcEEEecCCCccccccccccCccCCCCCCCCCCCCCCCCCCChhHHHHH
Q 016924 90 LEDEYGGFLSPKIVKDFGDYADLCFKEFGDRVKHWITLNEPETVGECGYAKGTKAPGRCSNYIGNCPAGNSATEPYVAAH 169 (380)
Q Consensus 90 l~~~~ggw~~~~~~~~f~~ya~~~~~~~~~~v~~w~t~NEp~~~~~~gy~~g~~~Pg~~~~~~~~~~~~~~~~~~~~~~h 169 (380)
|+++ |||+|+++++.|++||+.||++||+ |++|+|||||++++..||+.|.+|||.+.. .+..++++|
T Consensus 122 L~~~-GGW~n~~~v~~F~~YA~~~f~~fgd-Vk~WiT~NEP~~~~~~gy~~G~~~Pg~~~~----------~~~~~~a~h 189 (467)
T TIGR01233 122 LHSN-GDFLNRENIEHFIDYAAFCFEEFPE-VNYWTTFNEIGPIGDGQYLVGKFPPGIKYD----------LAKVFQSHH 189 (467)
T ss_pred HHHc-CCCCCHHHHHHHHHHHHHHHHHhCC-CCEEEEecchhhhhhccchhcccCCCccch----------hHHHHHHHH
Confidence 9986 9999999999999999999999998 999999999999999999999999996321 246899999
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCccEEEEecCCccccCC-CCHHHHHHHHHHHHHhhccchhccccCCCChhHHHHhccc-
Q 016924 170 HLILSHATAVKLYRQNYQASQNGLIGITVSSIWAVPKF-PTVASEKAAYRAIDFKFGWIFNPITYGSYPRSMQHLVGNR- 247 (380)
Q Consensus 170 ~~l~Aha~a~~~~~~~~~~~~~~~iG~~~~~~~~~P~~-~~~~d~~aa~~~~~~~~~~fldpi~~G~YP~~~~~~l~~~- 247 (380)
|+++|||+||+++|++ .++++||++++..++||++ ++|+|++||++++++.++||+||+++|+||+.|++.++.+
T Consensus 190 n~l~AHa~A~~~~~~~---~~~~~IGi~~~~~~~~P~~~~~~~D~~aA~~~~~~~~~~f~d~~~~G~Yp~~~~~~~~~~~ 266 (467)
T TIGR01233 190 NMMVSHARAVKLYKDK---GYKGEIGVVHALPTKYPYDPENPADVRAAELEDIIHNKFILDATYLGHYSDKTMEGVNHIL 266 (467)
T ss_pred HHHHHHHHHHHHHHHh---CCCCeEEEEecCceeEECCCCCHHHHHHHHHHHHHhhhcccchhhCCCCCHHHHHHHHhhh
Confidence 9999999999999997 3789999999999999998 8999999999999999999999999999999999987532
Q ss_pred -----CCCCChhHHhHh---cCCcceEEeecccceeeeccCCCCC---CCCcccCCCc--cccccccCCCC-CCCCCCCC
Q 016924 248 -----LPKFTKSQAEMV---KGSVDFLGLNYYTADYAEEVTSFSN---TNFSYTTDSR--VNRTKEKNGFP-LGQPTGSD 313 (380)
Q Consensus 248 -----lp~~t~~d~~~i---k~~~DFiGiNyY~~~~v~~~~~~~~---~~~~~~~~~~--~~~~~~~~g~~-~~~~t~~g 313 (380)
.|.||++|+++| ++++||||||||++.+|+....... .......... ..... ....+ ..+.++||
T Consensus 267 ~~~~~~~~~~~~d~~~i~~~~~~~DFlGinyYt~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~t~~g 345 (467)
T TIGR01233 267 AENGGELDLRDEDFQALDAAKDLNDFLGINYYMSDWMQAFDGETEIIHNGKGEKGSSKYQIKGVG-RRVAPDYVPRTDWD 345 (467)
T ss_pred hccCCCCCCCHHHHHHHhccCCCCCEEEEccccceeeccCCCccccccCCccccCcccccCCCcc-cccCCCCCCcCCCC
Confidence 377999999999 4899999999999999975311100 0000000000 00000 00011 22568899
Q ss_pred CCccChHHHHHHHHHHHHHcCC-CCEEEeeCCCCCCCCCCCCCCCccCChhHHHHHHHHHHHHHHhhC
Q 016924 314 WLSIYPKGIRELLLYLKKKYNP-PPIYITENGVGDVNSSSWPISYALNDTVRVNYYNDHLSYILEAIK 380 (380)
Q Consensus 314 W~~i~P~gL~~~L~~i~~rY~~-ppI~ITENG~~~~d~~~~~~~g~i~D~~Ri~Yl~~hL~~v~~Ai~ 380 (380)
|+ |+|+||+.+|++++++|++ |||||||||++..++ + .+|+|+|++||+||++||++|++||+
T Consensus 346 w~-i~P~Gl~~~L~~~~~~Y~~~ppi~ItENG~~~~d~--~-~~g~i~D~~Ri~Yl~~hl~~~~~Ai~ 409 (467)
T TIGR01233 346 WI-IYPEGLYDQIMRVKNDYPNYKKIYITENGLGYKDE--F-VDNTVYDDGRIDYVKQHLEVLSDAIA 409 (467)
T ss_pred Ce-eChHHHHHHHHHHHHHcCCCCCEEEeCCCCCCCCC--C-CCCccCCHHHHHHHHHHHHHHHHHHH
Confidence 96 9999999999999999997 679999999998775 3 36889999999999999999999984
No 8
>PRK09593 arb 6-phospho-beta-glucosidase; Reviewed
Probab=100.00 E-value=4.7e-95 Score=733.45 Aligned_cols=342 Identities=27% Similarity=0.467 Sum_probs=300.3
Q ss_pred CCcccCCcccCcHHHHHHHHHcCCCEEEeccccccccccCCCCCCccchHHHHHHHHHHHHHHCCCeEEEEcCCCCCcHh
Q 016924 10 NGDVADNFYFRYKEDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFHWDTPQA 89 (380)
Q Consensus 10 ~~~~a~~~y~~~~eDi~l~~~lG~~~~R~si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~~tL~h~~~P~~ 89 (380)
++++||||||||+|||+|||+||+|+|||||+||||+|+|. .|.+|++||+||+++|++|+++||+|+|||+|||+|+|
T Consensus 64 ~~~~a~d~Yhry~eDi~Lm~~lG~~aYRfSIsWsRI~P~G~-~~~~N~~gl~~Y~~lId~L~~~GI~P~VTL~H~dlP~~ 142 (478)
T PRK09593 64 PAKEAIDMYHHYKEDIALFAEMGFKTYRMSIAWTRIFPKGD-ELEPNEAGLQFYEDIFKECHKYGIEPLVTITHFDCPMH 142 (478)
T ss_pred CCCcccchHHhhHHHHHHHHHcCCCEEEEecchhhcccCCC-CCCCCHHHHHHHHHHHHHHHHcCCEEEEEecccCCCHH
Confidence 68999999999999999999999999999999999999974 25699999999999999999999999999999999999
Q ss_pred HHHhhCCCCChhhHHHHHHHHHHHHHHhCCcCcEEEecCCCccccccccc-cCc-cCCCCCCCCCCCCCCCCCCChhHHH
Q 016924 90 LEDEYGGFLSPKIVKDFGDYADLCFKEFGDRVKHWITLNEPETVGECGYA-KGT-KAPGRCSNYIGNCPAGNSATEPYVA 167 (380)
Q Consensus 90 l~~~~ggw~~~~~~~~f~~ya~~~~~~~~~~v~~w~t~NEp~~~~~~gy~-~g~-~~Pg~~~~~~~~~~~~~~~~~~~~~ 167 (380)
|+++||||+|+++++.|++||+.|+++|||+|++|+|||||++++..||. .|. +|||... .+..++|
T Consensus 143 L~~~~GGW~n~~~v~~F~~YA~~~~~~fgdrVk~WiT~NEP~~~~~~~~~~~g~~~~~g~~~-----------~~~~~~a 211 (478)
T PRK09593 143 LIEEYGGWRNRKMVGFYERLCRTLFTRYKGLVKYWLTFNEINMILHAPFMGAGLYFEEGENK-----------EQVKYQA 211 (478)
T ss_pred HHhhcCCCCChHHHHHHHHHHHHHHHHhcCcCCEEEeecchhhhhcccccccCcccCCCCch-----------hhhHHHH
Confidence 99999999999999999999999999999999999999999999988886 454 3776421 3568999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCccEEEEecCCccccCCCCHHHHHHHHHHHHHhhccchhccccCCCChhHHHHhcc-
Q 016924 168 AHHLILSHATAVKLYRQNYQASQNGLIGITVSSIWAVPKFPTVASEKAAYRAIDFKFGWIFNPITYGSYPRSMQHLVGN- 246 (380)
Q Consensus 168 ~h~~l~Aha~a~~~~~~~~~~~~~~~iG~~~~~~~~~P~~~~~~d~~aa~~~~~~~~~~fldpi~~G~YP~~~~~~l~~- 246 (380)
+||+++|||+||+++|+. .|++|||++++..+++|.+++++|++||++++ +.+.||+||+++|+||+.|++.+++
T Consensus 212 ~h~~llAHa~A~~~~~~~---~~~g~VGi~~~~~~~~P~~~~~~D~~aa~~~~-~~~~~fld~~~~G~YP~~~~~~~~~~ 287 (478)
T PRK09593 212 AHHELVASAIATKIAHEV---DPENKVGCMLAAGQYYPNTCHPEDVWAAMKED-RENYFFIDVQARGEYPNYAKKRFERE 287 (478)
T ss_pred HHHHHHHHHHHHHHHHHh---CCCCeEEEEEeCCeeEeCCCCHHHHHHHHHHH-HHhhhhhhhhhCCCccHHHHHHHHhc
Confidence 999999999999999986 37899999999999999999999999999987 4578999999999999999999975
Q ss_pred -cCCCCChhHHhHhc-CCcceEEeecccceeeeccCCCCCCCCcccCCCccccccccCCCCCCCCCCCCCCccChHHHHH
Q 016924 247 -RLPKFTKSQAEMVK-GSVDFLGLNYYTADYAEEVTSFSNTNFSYTTDSRVNRTKEKNGFPLGQPTGSDWLSIYPKGIRE 324 (380)
Q Consensus 247 -~lp~~t~~d~~~ik-~~~DFiGiNyY~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~t~~gW~~i~P~gL~~ 324 (380)
.+|.||++|+++|+ +++||||||||++.+|+....... .. ...... ... +|..+.++|||+ |+|+||+.
T Consensus 288 ~~~~~~~~~d~~~ik~g~~DFlGiNyYt~~~v~~~~~~~~---~~-~~~~~~--~~~--~p~~~~~~~gw~-i~P~Gl~~ 358 (478)
T PRK09593 288 GITIEMTEEDLELLKENTVDFISFSYYSSRVASGDPKVNE---KT-AGNIFA--SLK--NPYLKASEWGWQ-IDPLGLRI 358 (478)
T ss_pred CCCCCCCHHHHHHHhcCCCCEEEEecccCcccccCCCCCC---CC-CCCccc--ccc--CCCcccCCCCCE-ECHHHHHH
Confidence 46889999999996 899999999999999975321000 00 000000 001 245567899996 99999999
Q ss_pred HHHHHHHHcCCCCEEEeeCCCCCCCCCCCCCCCccCChhHHHHHHHHHHHHHHhh
Q 016924 325 LLLYLKKKYNPPPIYITENGVGDVNSSSWPISYALNDTVRVNYYNDHLSYILEAI 379 (380)
Q Consensus 325 ~L~~i~~rY~~ppI~ITENG~~~~d~~~~~~~g~i~D~~Ri~Yl~~hL~~v~~Ai 379 (380)
+|+++++||++| |||||||++..++ .+.+|+|+|++||+||++||++|++||
T Consensus 359 ~l~~~~~~Y~~P-i~ItENG~~~~d~--~~~~g~i~D~~Ri~yl~~hl~~~~~Ai 410 (478)
T PRK09593 359 TLNTIWDRYQKP-MFIVENGLGAVDK--PDENGYVEDDYRIDYLAAHIKAMRDAI 410 (478)
T ss_pred HHHHHHHHcCCC-EEEEcCCCCCCCC--CCCCCccCCHHHHHHHHHHHHHHHHHH
Confidence 999999999975 9999999998775 456789999999999999999999998
No 9
>PRK09589 celA 6-phospho-beta-glucosidase; Reviewed
Probab=100.00 E-value=7.9e-95 Score=731.43 Aligned_cols=342 Identities=29% Similarity=0.520 Sum_probs=296.8
Q ss_pred CCcccCCcccCcHHHHHHHHHcCCCEEEeccccccccccCCCCCCccchHHHHHHHHHHHHHHCCCeEEEEcCCCCCcHh
Q 016924 10 NGDVADNFYFRYKEDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFHWDTPQA 89 (380)
Q Consensus 10 ~~~~a~~~y~~~~eDi~l~~~lG~~~~R~si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~~tL~h~~~P~~ 89 (380)
++++||||||||+|||+|||+||+|+|||||+||||+|+|. .+.+|++||+||+++|++|+++||+|+|||+|||+|+|
T Consensus 58 ~~~~a~D~Yhry~eDi~Lm~~lG~~~yRfSIsWsRI~P~G~-~~~~N~~gl~~Y~~lid~L~~~GI~P~VTL~H~dlP~~ 136 (476)
T PRK09589 58 PNHEAIDFYHRYKEDIALFAEMGFKCFRTSIAWTRIFPQGD-ELEPNEEGLQFYDDLFDECLKQGIEPVVTLSHFEMPYH 136 (476)
T ss_pred CCcccccHHHhhHHHHHHHHHcCCCEEEeccchhhcCcCCC-CCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCCCHH
Confidence 68999999999999999999999999999999999999974 25689999999999999999999999999999999999
Q ss_pred HHHhhCCCCChhhHHHHHHHHHHHHHHhCCcCcEEEecCCCcccccc-----ccc-cCc-cCCCCCCCCCCCCCCCCCCC
Q 016924 90 LEDEYGGFLSPKIVKDFGDYADLCFKEFGDRVKHWITLNEPETVGEC-----GYA-KGT-KAPGRCSNYIGNCPAGNSAT 162 (380)
Q Consensus 90 l~~~~ggw~~~~~~~~f~~ya~~~~~~~~~~v~~w~t~NEp~~~~~~-----gy~-~g~-~~Pg~~~~~~~~~~~~~~~~ 162 (380)
|+++||||+|+++++.|++||+.||++|||+|++|+|||||++++.. ||. .|. +|||... ..
T Consensus 137 L~~~yGGW~n~~~i~~F~~YA~~~f~~fgdrVk~WiT~NEp~~~~~~~~~~~~~~~~g~~~~pg~~~-----------~~ 205 (476)
T PRK09589 137 LVTEYGGWRNRKLIDFFVRFAEVVFTRYKDKVKYWMTFNEINNQANFSEDFAPFTNSGILYSPGEDR-----------EQ 205 (476)
T ss_pred HHHhcCCcCChHHHHHHHHHHHHHHHHhcCCCCEEEEecchhhhhccccccCCccccccccCCCCch-----------hH
Confidence 99999999999999999999999999999999999999999998766 444 344 3665321 24
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhcCCCccEEEEecCCccccCCCCHHHHHHHHHHHHHhhccchhccccCCCChhHHH
Q 016924 163 EPYVAAHHLILSHATAVKLYRQNYQASQNGLIGITVSSIWAVPKFPTVASEKAAYRAIDFKFGWIFNPITYGSYPRSMQH 242 (380)
Q Consensus 163 ~~~~~~h~~l~Aha~a~~~~~~~~~~~~~~~iG~~~~~~~~~P~~~~~~d~~aa~~~~~~~~~~fldpi~~G~YP~~~~~ 242 (380)
..++|+||+++|||+||+++|+.. ++++||++++..++||.+++|+|++||++++.+ +.||+||+++|+||+.|++
T Consensus 206 ~~~~~~h~~llAha~A~~~~~~~~---~~~~iG~~~~~~~~~P~~~~~~d~~aa~~~~~~-~~~f~d~~~~G~YP~~~~~ 281 (476)
T PRK09589 206 IMYQAAHYELVASALAVKTGHEIN---PDFQIGCMIAMCPIYPLTCAPNDMMMATKAMHR-RYWFTDVHVRGYYPQHILN 281 (476)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhC---CCCcEEEEEeCCeeeeCCCCHHHHHHHHHHHHh-ccceecceeCCCCcHHHHH
Confidence 579999999999999999999974 789999999999999999999999999998854 6799999999999999999
Q ss_pred Hhccc--CCCCChhHHhHh-cCCcceEEeecccceeeeccCCCCCCCCcccCCCccccccccCCCCCCCCCCCCCCccCh
Q 016924 243 LVGNR--LPKFTKSQAEMV-KGSVDFLGLNYYTADYAEEVTSFSNTNFSYTTDSRVNRTKEKNGFPLGQPTGSDWLSIYP 319 (380)
Q Consensus 243 ~l~~~--lp~~t~~d~~~i-k~~~DFiGiNyY~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~t~~gW~~i~P 319 (380)
.++++ .|.||++|+++| ++++||||||||++.+|+.....+. ...... ... .. +|..+.++|||+ |+|
T Consensus 282 ~~~~~~~~~~~t~~d~~~l~~g~~DFlGiNyYts~~v~~~~~~~~--~~~~~~--~~~--~~--~~~~~~~~~gw~-i~P 352 (476)
T PRK09589 282 YFARKGFNLDITPEDNAILAEGCVDYIGFSYYMSFATKFHEDNPQ--LDYVET--RDL--VS--NPYVKASEWGWQ-IDP 352 (476)
T ss_pred HHHhcCCCCCCCHHHHHHHhcCCCCEEEEecccCcccccCCCCCC--CCcccc--ccc--cc--CCCcccCCCCCc-cCc
Confidence 99763 478999999988 5899999999999999975321100 000000 000 01 244567889996 999
Q ss_pred HHHHHHHHHHHHHcCCCCEEEeeCCCCCCCCCCCCCCCccCChhHHHHHHHHHHHHHHhh
Q 016924 320 KGIRELLLYLKKKYNPPPIYITENGVGDVNSSSWPISYALNDTVRVNYYNDHLSYILEAI 379 (380)
Q Consensus 320 ~gL~~~L~~i~~rY~~ppI~ITENG~~~~d~~~~~~~g~i~D~~Ri~Yl~~hL~~v~~Ai 379 (380)
+|||.+|++++++|++| |||||||++..++ ++.+|+|+|++||+||++||++|++||
T Consensus 353 ~Gl~~~L~~~~~~Y~~P-i~ItENG~~~~d~--~~~~g~i~D~~Ri~Yl~~hl~~~~~Ai 409 (476)
T PRK09589 353 AGLRYSLNWFWDHYQLP-LFIVENGFGAIDQ--READGTVNDHYRIDYLAAHIREMKKAV 409 (476)
T ss_pred HHHHHHHHHHHHhcCCC-EEEEeCCcccCCC--CCcCCcccCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999976 9999999998876 456789999999999999999999998
No 10
>PRK15014 6-phospho-beta-glucosidase BglA; Provisional
Probab=100.00 E-value=1.5e-93 Score=721.64 Aligned_cols=341 Identities=26% Similarity=0.474 Sum_probs=297.1
Q ss_pred CCcccCCcccCcHHHHHHHHHcCCCEEEeccccccccccCCCCCCccchHHHHHHHHHHHHHHCCCeEEEEcCCCCCcHh
Q 016924 10 NGDVADNFYFRYKEDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFHWDTPQA 89 (380)
Q Consensus 10 ~~~~a~~~y~~~~eDi~l~~~lG~~~~R~si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~~tL~h~~~P~~ 89 (380)
++++||||||||+|||+|||+||+|+|||||+||||+|+|. .+.+|++||+||+++|++|+++||+|+|||+|||+|+|
T Consensus 60 ~~~~A~D~Yhry~EDI~Lm~elG~~~yRfSIsWsRI~P~G~-~~~~N~~gl~~Y~~lid~l~~~GI~P~vTL~H~dlP~~ 138 (477)
T PRK15014 60 PNHEAVDFYGHYKEDIKLFAEMGFKCFRTSIAWTRIFPKGD-EAQPNEEGLKFYDDMFDELLKYNIEPVITLSHFEMPLH 138 (477)
T ss_pred CCCcccCcccccHHHHHHHHHcCCCEEEecccceeeccCCC-CCCCCHHHHHHHHHHHHHHHHcCCEEEEEeeCCCCCHH
Confidence 78999999999999999999999999999999999999974 35699999999999999999999999999999999999
Q ss_pred HHHhhCCCCChhhHHHHHHHHHHHHHHhCCcCcEEEecCCCccc-----ccccccc-Ccc-CCCCCCCCCCCCCCCCCCC
Q 016924 90 LEDEYGGFLSPKIVKDFGDYADLCFKEFGDRVKHWITLNEPETV-----GECGYAK-GTK-APGRCSNYIGNCPAGNSAT 162 (380)
Q Consensus 90 l~~~~ggw~~~~~~~~f~~ya~~~~~~~~~~v~~w~t~NEp~~~-----~~~gy~~-g~~-~Pg~~~~~~~~~~~~~~~~ 162 (380)
|+++||||+|+++++.|++||+.||++|||+|++|+|||||+++ +..||.. |.+ ||+.. +.+
T Consensus 139 L~~~yGGW~n~~~~~~F~~Ya~~~f~~fgdrVk~WiT~NEp~~~~~~~~~~~gy~~~g~~~~~~~~-----------~~~ 207 (477)
T PRK15014 139 LVQQYGSWTNRKVVDFFVRFAEVVFERYKHKVKYWMTFNEINNQRNWRAPLFGYCCSGVVYTEHEN-----------PEE 207 (477)
T ss_pred HHHhcCCCCChHHHHHHHHHHHHHHHHhcCcCCEEEEecCcccccccccccccccccccccCCCCc-----------hhH
Confidence 99999999999999999999999999999999999999999987 6678874 765 45421 124
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhcCCCccEEEEecCCccccCCCCHHHHHHHHHHHHHhhccchhccccCCCChhHHH
Q 016924 163 EPYVAAHHLILSHATAVKLYRQNYQASQNGLIGITVSSIWAVPKFPTVASEKAAYRAIDFKFGWIFNPITYGSYPRSMQH 242 (380)
Q Consensus 163 ~~~~~~h~~l~Aha~a~~~~~~~~~~~~~~~iG~~~~~~~~~P~~~~~~d~~aa~~~~~~~~~~fldpi~~G~YP~~~~~ 242 (380)
..++|+||+++|||+||+++|+.. ++++||++++..++||.+++|+|++||++++. ...||+||+++|+||+.|++
T Consensus 208 ~~~~~~h~~llAHa~A~~~~~~~~---~~~~IGi~~~~~~~~P~~~~~~D~~Aa~~~~~-~~~~f~d~~~~G~YP~~~~~ 283 (477)
T PRK15014 208 TMYQVLHHQFVASALAVKAARRIN---PEMKVGCMLAMVPLYPYSCNPDDVMFAQESMR-ERYVFTDVQLRGYYPSYVLN 283 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhC---CCCeEEEEEeCceeccCCCCHHHHHHHHHHHH-hcccccccccCCCCCHHHHH
Confidence 589999999999999999999974 78999999999999999999999999998773 23359999999999999999
Q ss_pred HhcccC--CCCChhHHhHh-cCCcceEEeecccceeeeccCCCCCCCCcccCCCccccccccCCCCCCCCCCCCCCccCh
Q 016924 243 LVGNRL--PKFTKSQAEMV-KGSVDFLGLNYYTADYAEEVTSFSNTNFSYTTDSRVNRTKEKNGFPLGQPTGSDWLSIYP 319 (380)
Q Consensus 243 ~l~~~l--p~~t~~d~~~i-k~~~DFiGiNyY~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~t~~gW~~i~P 319 (380)
.++++. |.++++|+++| ++++||||||||+|.+|+...........+ .. ... +|..+.++|||+ |+|
T Consensus 284 ~~~~~~~~~~~~~~d~~~i~~~~~DFlGiNyYt~~~v~~~~~~~~~~~~~-----~~--~~~--~~~~~~~~~gw~-i~P 353 (477)
T PRK15014 284 EWERRGFNIKMEDGDLDVLREGTCDYLGFSYYMTNAVKAEGGTGDAISGF-----EG--SVP--NPYVKASDWGWQ-IDP 353 (477)
T ss_pred HHHhcCCCCCCCHHHHHHHhcCCCCEEEEcceeCeeeccCCCCCCCcccc-----cc--ccC--CCCcccCCCCCc-cCc
Confidence 998754 78999999988 589999999999999997532100000000 00 001 244467889996 999
Q ss_pred HHHHHHHHHHHHHcCCCCEEEeeCCCCCCCCCCCCCCCccCChhHHHHHHHHHHHHHHhh
Q 016924 320 KGIRELLLYLKKKYNPPPIYITENGVGDVNSSSWPISYALNDTVRVNYYNDHLSYILEAI 379 (380)
Q Consensus 320 ~gL~~~L~~i~~rY~~ppI~ITENG~~~~d~~~~~~~g~i~D~~Ri~Yl~~hL~~v~~Ai 379 (380)
+|||.+|+++++||++| |||||||++..++ ++.+|+|+|++||+||++||++|++||
T Consensus 354 ~Gl~~~l~~~~~~Y~~P-i~ItENG~~~~d~--~~~~g~i~D~~Ri~Yl~~hl~~l~~Ai 410 (477)
T PRK15014 354 VGLRYALCELYERYQKP-LFIVENGFGAYDK--VEEDGSINDDYRIDYLRAHIEEMKKAV 410 (477)
T ss_pred HHHHHHHHHHHHhcCCC-EEEeCCCCCCCCC--cCcCCccCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999976 9999999998776 556889999999999999999999998
No 11
>PF00232 Glyco_hydro_1: Glycosyl hydrolase family 1; InterPro: IPR001360 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 1 GH1 from CAZY comprises enzymes with a number of known activities; beta-glucosidase (3.2.1.21 from EC); beta-galactosidase (3.2.1.23 from EC); 6-phospho-beta-galactosidase (3.2.1.85 from EC); 6-phospho-beta-glucosidase (3.2.1.86 from EC); lactase-phlorizin hydrolase (3.2.1.62 from EC), (3.2.1.108 from EC); beta-mannosidase (3.2.1.25 from EC); myrosinase (3.2.1.147 from EC). ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1QVB_A 3AHY_D 2E9L_A 2ZOX_A 2JFE_X 2E9M_A 3FIZ_A 3FIY_A 3CMJ_A 3FJ0_A ....
Probab=100.00 E-value=4.3e-95 Score=734.41 Aligned_cols=353 Identities=48% Similarity=0.844 Sum_probs=308.6
Q ss_pred CccccCCCCCcccCCcccCcHHHHHHHHHcCCCEEEeccccccccccCCCCCCccchHHHHHHHHHHHHHHCCCeEEEEc
Q 016924 2 AEKILDHSNGDVADNFYFRYKEDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTL 81 (380)
Q Consensus 2 ~~~~~~~~~~~~a~~~y~~~~eDi~l~~~lG~~~~R~si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~~tL 81 (380)
||++.+++++++||||||||+|||+|||+||+++|||||+|+||+|+|. .|.+|+++|++|+++|++|+++||+|+|||
T Consensus 41 ~~~~~~~~~~~~a~d~y~~y~eDi~l~~~lg~~~yRfsi~W~Ri~P~g~-~g~~n~~~~~~Y~~~i~~l~~~gi~P~vtL 119 (455)
T PF00232_consen 41 PGKVEDGSTGDVACDHYHRYKEDIALMKELGVNAYRFSISWSRIFPDGF-EGKVNEEGLDFYRDLIDELLENGIEPIVTL 119 (455)
T ss_dssp TTSSTTSSSSSSTTGHHHHHHHHHHHHHHHT-SEEEEE--HHHHSTTSS-SSSS-HHHHHHHHHHHHHHHHTT-EEEEEE
T ss_pred cceeeccccCcccccchhhhhHHHHHHHhhccceeeeecchhheeeccc-ccccCHhHhhhhHHHHHHHHhhccceeeee
Confidence 6788889999999999999999999999999999999999999999973 499999999999999999999999999999
Q ss_pred CCCCCcHhHHHhhCCCCChhhHHHHHHHHHHHHHHhCCcCcEEEecCCCccccccccccCccCCCCCCCCCCCCCCCCCC
Q 016924 82 FHWDTPQALEDEYGGFLSPKIVKDFGDYADLCFKEFGDRVKHWITLNEPETVGECGYAKGTKAPGRCSNYIGNCPAGNSA 161 (380)
Q Consensus 82 ~h~~~P~~l~~~~ggw~~~~~~~~f~~ya~~~~~~~~~~v~~w~t~NEp~~~~~~gy~~g~~~Pg~~~~~~~~~~~~~~~ 161 (380)
+|||+|+||++ +|||+|+++++.|++||+.|+++|||+|++|+|||||++++..||+.|.+|||..+ .
T Consensus 120 ~H~~~P~~l~~-~ggw~~~~~~~~F~~Ya~~~~~~~gd~V~~w~T~NEp~~~~~~~y~~g~~~p~~~~-----------~ 187 (455)
T PF00232_consen 120 YHFDLPLWLED-YGGWLNRETVDWFARYAEFVFERFGDRVKYWITFNEPNVFALLGYLYGGFPPGRDS-----------L 187 (455)
T ss_dssp ESS--BHHHHH-HTGGGSTHHHHHHHHHHHHHHHHHTTTBSEEEEEETHHHHHHHHHTSSSSTTCSST-----------H
T ss_pred eecccccceee-cccccCHHHHHHHHHHHHHHHHHhCCCcceEEeccccceeeccccccccccccccc-----------c
Confidence 99999999998 79999999999999999999999999999999999999999999999999999644 4
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHhhcCCCccEEEEecCCccccCCCCHHHH-HHHHHHHHHhhccchhccccCCCChhH
Q 016924 162 TEPYVAAHHLILSHATAVKLYRQNYQASQNGLIGITVSSIWAVPKFPTVASE-KAAYRAIDFKFGWIFNPITYGSYPRSM 240 (380)
Q Consensus 162 ~~~~~~~h~~l~Aha~a~~~~~~~~~~~~~~~iG~~~~~~~~~P~~~~~~d~-~aa~~~~~~~~~~fldpi~~G~YP~~~ 240 (380)
+..++|+||+++|||+||+++|+++ +++|||++++..+++|.+++++|. +||++.+++.++||+||+++|+||..|
T Consensus 188 ~~~~~~~h~~l~AHa~A~~~~~~~~---~~~~IGi~~~~~~~~P~~~~~~d~~~Aa~~~~~~~n~~f~dpi~~G~YP~~~ 264 (455)
T PF00232_consen 188 KAFYQAAHNLLLAHAKAVKAIKEKY---PDGKIGIALNFSPFYPLSPSPEDDVAAAERADEFHNGWFLDPIFKGDYPEEM 264 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT---CTSEEEEEEEEEEEEESSSSHHHHHHHHHHHHHHHTHHHHHHHHHSSSEHHH
T ss_pred chhhHHHhhHHHHHHHHHHHHhhcc---cceEEeccccccccCCCCccchhhHHHHHHHHHHhhcccccCchhhcCChHH
Confidence 7889999999999999999999986 899999999999999999988776 899999999999999999999999999
Q ss_pred HHHhccc--CCCCChhHHhHhcCCcceEEeecccceeeeccCCCCCCCCcccCCCccccccccCCCCCCCCCCCCCCccC
Q 016924 241 QHLVGNR--LPKFTKSQAEMVKGSVDFLGLNYYTADYAEEVTSFSNTNFSYTTDSRVNRTKEKNGFPLGQPTGSDWLSIY 318 (380)
Q Consensus 241 ~~~l~~~--lp~~t~~d~~~ik~~~DFiGiNyY~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~t~~gW~~i~ 318 (380)
++.++++ +|.||++|+++|++++||||||||++.+|+..+...... ..... .... ...++.++.+++||+ ++
T Consensus 265 ~~~~~~~~~lp~ft~ed~~~ikg~~DFlGiNYYt~~~v~~~~~~~~~~-~~~~~--~~~~--~~~~~~~~~t~~gw~-i~ 338 (455)
T PF00232_consen 265 KEYLGERGILPEFTEEDKELIKGSIDFLGINYYTSRYVRADPNPSSPP-SYDSD--APFG--QPYNPGGPTTDWGWE-IY 338 (455)
T ss_dssp HHHHGGGTSSTTSGHHHHHHHTTTTSEEEEEESEEEEEEESSSSTSST-THEEE--ESEE--EECETSSEBCTTSTB-BE
T ss_pred hhccccccccccccchhhhcccccchhhhhccccceeeccCccccccc-cccCC--cccc--ccccccccccccCcc-cc
Confidence 9999987 999999999999999999999999999999865322111 11000 0000 000244568999996 99
Q ss_pred hHHHHHHHHHHHHHcCCCCEEEeeCCCCCCCCCCCCCCCccCChhHHHHHHHHHHHHHHhh
Q 016924 319 PKGIRELLLYLKKKYNPPPIYITENGVGDVNSSSWPISYALNDTVRVNYYNDHLSYILEAI 379 (380)
Q Consensus 319 P~gL~~~L~~i~~rY~~ppI~ITENG~~~~d~~~~~~~g~i~D~~Ri~Yl~~hL~~v~~Ai 379 (380)
|+|||.+|++++++|++|||||||||++..++ ... ++|+|++||+||++||++|++||
T Consensus 339 P~Gl~~~L~~l~~~Y~~~pI~ITENG~~~~~~--~~~-~~v~D~~Ri~yl~~hl~~v~~Ai 396 (455)
T PF00232_consen 339 PEGLRDVLRYLKDRYGNPPIYITENGIGDPDE--VDD-GKVDDDYRIDYLQDHLNQVLKAI 396 (455)
T ss_dssp THHHHHHHHHHHHHHTSSEEEEEEE---EETT--CTT-SHBSHHHHHHHHHHHHHHHHHHH
T ss_pred cchHhhhhhhhccccCCCcEEEeccccccccc--ccc-cCcCcHHHHHHHHHHHHHHHhhh
Confidence 99999999999999998889999999998876 223 99999999999999999999998
No 12
>PRK09852 cryptic 6-phospho-beta-glucosidase; Provisional
Probab=100.00 E-value=4.3e-93 Score=717.07 Aligned_cols=343 Identities=30% Similarity=0.498 Sum_probs=302.8
Q ss_pred CCcccCCcccCcHHHHHHHHHcCCCEEEeccccccccccCCCCCCccchHHHHHHHHHHHHHHCCCeEEEEcCCCCCcHh
Q 016924 10 NGDVADNFYFRYKEDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFHWDTPQA 89 (380)
Q Consensus 10 ~~~~a~~~y~~~~eDi~l~~~lG~~~~R~si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~~tL~h~~~P~~ 89 (380)
++++||||||||+|||+|||+||+|+|||||+|+||+|++. .+.+|+++|+||+++|++|+++||+|+|||+|||+|+|
T Consensus 62 ~~~~A~D~Yhry~eDi~l~~~lG~~~yR~si~WsRi~P~g~-~~~~n~~~~~~Y~~~i~~l~~~gi~p~VtL~H~~~P~~ 140 (474)
T PRK09852 62 PSHEAIDFYHRYKEDIALMAEMGFKVFRTSIAWSRLFPQGD-ELTPNQQGIAFYRSVFEECKKYGIEPLVTLCHFDVPMH 140 (474)
T ss_pred CCCccCchhhhhHHHHHHHHHcCCCeEEeeceeeeeeeCCC-CCCCCHHHHHHHHHHHHHHHHcCCEEEEEeeCCCCCHH
Confidence 68999999999999999999999999999999999999974 25689999999999999999999999999999999999
Q ss_pred HHHhhCCCCChhhHHHHHHHHHHHHHHhCCcCcEEEecCCCccccccccc-cCc-cCCCCCCCCCCCCCCCCCCChhHHH
Q 016924 90 LEDEYGGFLSPKIVKDFGDYADLCFKEFGDRVKHWITLNEPETVGECGYA-KGT-KAPGRCSNYIGNCPAGNSATEPYVA 167 (380)
Q Consensus 90 l~~~~ggw~~~~~~~~f~~ya~~~~~~~~~~v~~w~t~NEp~~~~~~gy~-~g~-~~Pg~~~~~~~~~~~~~~~~~~~~~ 167 (380)
|+++||||+|+++++.|++||+.|+++|||+|++|+|||||++++..||. .|. +|||... .+..++|
T Consensus 141 l~~~~GGW~~~~~~~~F~~ya~~~~~~fgd~Vk~WiTfNEPn~~~~~gy~~~g~~~~p~~~~-----------~~~~~~~ 209 (474)
T PRK09852 141 LVTEYGSWRNRKMVEFFSRYARTCFEAFDGLVKYWLTFNEINIMLHSPFSGAGLVFEEGENQ-----------DQVKYQA 209 (474)
T ss_pred HHHhcCCCCCHHHHHHHHHHHHHHHHHhcCcCCeEEeecchhhhhccCccccCcccCCCCCc-----------hHhHHHH
Confidence 99999999999999999999999999999999999999999999999996 665 5887422 2458999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCccEEEEecCCccccCCCCHHHHHHHHHHHHHhhccchhccccCCCChhHHHHhccc
Q 016924 168 AHHLILSHATAVKLYRQNYQASQNGLIGITVSSIWAVPKFPTVASEKAAYRAIDFKFGWIFNPITYGSYPRSMQHLVGNR 247 (380)
Q Consensus 168 ~h~~l~Aha~a~~~~~~~~~~~~~~~iG~~~~~~~~~P~~~~~~d~~aa~~~~~~~~~~fldpi~~G~YP~~~~~~l~~~ 247 (380)
+||+++|||+||+++|+.. ++++||++++..+++|.+++|+|++||++++ +.+.||+||+++|+||+.|++.++++
T Consensus 210 ~hn~llAHa~A~~~~~~~~---~~~~IGi~~~~~~~~P~~~~~~d~~AA~~~~-~~~~~~~d~~~~G~YP~~~~~~~~~~ 285 (474)
T PRK09852 210 AHHELVASALATKIAHEVN---PQNQVGCMLAGGNFYPYSCKPEDVWAALEKD-RENLFFIDVQARGAYPAYSARVFREK 285 (474)
T ss_pred HHHHHHHHHHHHHHHHHhC---CCCeEEEEEeCCeeeeCCCCHHHHHHHHHHH-HHhhhhcchhhCCCccHHHHHHHHhc
Confidence 9999999999999999874 7899999999999999999999999999877 55789999999999999999999764
Q ss_pred --CCCCChhHHhHhcCCcceEEeecccceeeeccCCCCCCCCcccCCCccccccccCCCCCCCCCCCCCCccChHHHHHH
Q 016924 248 --LPKFTKSQAEMVKGSVDFLGLNYYTADYAEEVTSFSNTNFSYTTDSRVNRTKEKNGFPLGQPTGSDWLSIYPKGIREL 325 (380)
Q Consensus 248 --lp~~t~~d~~~ik~~~DFiGiNyY~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~t~~gW~~i~P~gL~~~ 325 (380)
+|.|+++|+++|++++||||||||++.+|+....... .. ....... .. +|.++.++|||+ |+|+|||.+
T Consensus 286 ~~~p~~~~~d~~~i~~~~DFlGiNyYt~~~v~~~~~~~~--~~--~~~~~~~--~~--~p~~~~~~~gw~-i~P~Gl~~~ 356 (474)
T PRK09852 286 GVTIDKAPGDDEILKNTVDFVSFSYYASRCASAEMNANN--SS--AANVVKS--LR--NPYLQVSDWGWG-IDPLGLRIT 356 (474)
T ss_pred CCCCCCCHHHHHHhcCCCCEEEEccccCeecccCCCCCC--CC--cCCceec--cc--CCCcccCCCCCe-eChHHHHHH
Confidence 7999999999999999999999999999975321000 00 0000000 11 255567899995 999999999
Q ss_pred HHHHHHHcCCCCEEEeeCCCCCCCCCCCCCCCccCChhHHHHHHHHHHHHHHhhC
Q 016924 326 LLYLKKKYNPPPIYITENGVGDVNSSSWPISYALNDTVRVNYYNDHLSYILEAIK 380 (380)
Q Consensus 326 L~~i~~rY~~ppI~ITENG~~~~d~~~~~~~g~i~D~~Ri~Yl~~hL~~v~~Ai~ 380 (380)
|+++++||++| |||||||++..++ ++.+|+|+|++||+||++||++|++||+
T Consensus 357 l~~~~~~Y~~P-i~ItENG~~~~d~--~~~~g~i~D~~Ri~Yl~~hl~~~~~Ai~ 408 (474)
T PRK09852 357 MNMMYDRYQKP-LFLVENGLGAKDE--IAANGEINDDYRISYLREHIRAMGEAIA 408 (474)
T ss_pred HHHHHHhcCCC-EEEeCCCCCCCCC--cCCCCccCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999986 9999999998776 4568899999999999999999999984
No 13
>TIGR03356 BGL beta-galactosidase.
Probab=100.00 E-value=8.8e-92 Score=702.82 Aligned_cols=343 Identities=41% Similarity=0.713 Sum_probs=310.2
Q ss_pred CccccCCCCCcccCCcccCcHHHHHHHHHcCCCEEEeccccccccccCCCCCCccchHHHHHHHHHHHHHHCCCeEEEEc
Q 016924 2 AEKILDHSNGDVADNFYFRYKEDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTL 81 (380)
Q Consensus 2 ~~~~~~~~~~~~a~~~y~~~~eDi~l~~~lG~~~~R~si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~~tL 81 (380)
||++.+++++++||||||+|+|||++||+||+++|||||+|+||+|+| .|.+|++++++|+++|++|+++||+|+|||
T Consensus 37 ~~~~~~~~~~~~a~d~y~~y~eDi~l~~~~G~~~~R~si~Wsri~p~g--~~~~n~~~~~~y~~~i~~l~~~gi~pivtL 114 (427)
T TIGR03356 37 PGKVKDGDTGDVACDHYHRYEEDVALMKELGVDAYRFSIAWPRIFPEG--TGPVNPKGLDFYDRLVDELLEAGIEPFVTL 114 (427)
T ss_pred CCcccCCCCCCccccHHHhHHHHHHHHHHcCCCeEEcccchhhcccCC--CCCcCHHHHHHHHHHHHHHHHcCCeeEEee
Confidence 456666778999999999999999999999999999999999999997 489999999999999999999999999999
Q ss_pred CCCCCcHhHHHhhCCCCChhhHHHHHHHHHHHHHHhCCcCcEEEecCCCccccccccccCccCCCCCCCCCCCCCCCCCC
Q 016924 82 FHWDTPQALEDEYGGFLSPKIVKDFGDYADLCFKEFGDRVKHWITLNEPETVGECGYAKGTKAPGRCSNYIGNCPAGNSA 161 (380)
Q Consensus 82 ~h~~~P~~l~~~~ggw~~~~~~~~f~~ya~~~~~~~~~~v~~w~t~NEp~~~~~~gy~~g~~~Pg~~~~~~~~~~~~~~~ 161 (380)
+|||+|+||+++ |||.++++++.|++||+.|+++||++|++|+|||||++++..||..|.+||+.++ .
T Consensus 115 ~Hfd~P~~l~~~-gGw~~~~~~~~f~~ya~~~~~~~~d~v~~w~t~NEp~~~~~~~y~~G~~~P~~~~-----------~ 182 (427)
T TIGR03356 115 YHWDLPQALEDR-GGWLNRDTAEWFAEYAAVVAERLGDRVKHWITLNEPWCSAFLGYGLGVHAPGLRD-----------L 182 (427)
T ss_pred ccCCccHHHHhc-CCCCChHHHHHHHHHHHHHHHHhCCcCCEEEEecCcceecccchhhccCCCCCcc-----------H
Confidence 999999999988 9999999999999999999999999999999999999999999999999998543 1
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHhhcCCCccEEEEecCCccccCCCCHHHHHHHHHHHHHhhccchhccccCCCChhHH
Q 016924 162 TEPYVAAHHLILSHATAVKLYRQNYQASQNGLIGITVSSIWAVPKFPTVASEKAAYRAIDFKFGWIFNPITYGSYPRSMQ 241 (380)
Q Consensus 162 ~~~~~~~h~~l~Aha~a~~~~~~~~~~~~~~~iG~~~~~~~~~P~~~~~~d~~aa~~~~~~~~~~fldpi~~G~YP~~~~ 241 (380)
...++++||+++|||+||+++|++. |++|||++++..+++|.+++|+|+.||++++++.++||+||++.|+||+.|+
T Consensus 183 ~~~~~~~hnll~Aha~A~~~~~~~~---~~~~IGi~~~~~~~~P~~~~~~d~~aa~~~~~~~~~~f~d~~~~G~yP~~~~ 259 (427)
T TIGR03356 183 RAALQAAHHLLLAHGLAVQALRANG---PGAQVGIVLNLTPVYPASDSPEDVAAARRADGLLNRWFLDPLLKGRYPEDLL 259 (427)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhC---CCCeEEEEEeCCeeeeCCCCHHHHHHHHHHHHHHhhhhhHHHhCCCCCHHHH
Confidence 4579999999999999999999975 7899999999999999999999999999999999999999999999999999
Q ss_pred HHhcccCCCCChhHHhHhcCCcceEEeecccceeeeccCCCCCCCCcccCCCccccccccCCCCCCCCCCCCCCccChHH
Q 016924 242 HLVGNRLPKFTKSQAEMVKGSVDFLGLNYYTADYAEEVTSFSNTNFSYTTDSRVNRTKEKNGFPLGQPTGSDWLSIYPKG 321 (380)
Q Consensus 242 ~~l~~~lp~~t~~d~~~ik~~~DFiGiNyY~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~t~~gW~~i~P~g 321 (380)
+.++ .+|.||++|++++++++||||||||++.+|+...... ... . .. .+..+.+++||+ |+|+|
T Consensus 260 ~~l~-~~p~~~~~d~~~l~~~~DFiGiNyY~~~~v~~~~~~~---~~~-----~----~~--~~~~~~~~~gw~-i~P~G 323 (427)
T TIGR03356 260 EYLG-DAPFVQDGDLETIAQPLDFLGINYYTRSVVAADPGTG---AGF-----V----EV--PEGVPKTAMGWE-VYPEG 323 (427)
T ss_pred HHhc-cCCCCCHHHHHHhcCCCCEEEEeccccceeccCCCCC---CCc-----c----cc--CCCCCcCCCCCe-echHH
Confidence 9997 4799999999999999999999999999997532100 000 0 00 122356789995 99999
Q ss_pred HHHHHHHHHHHcCCCCEEEeeCCCCCCCCCCCCCCCccCChhHHHHHHHHHHHHHHhhC
Q 016924 322 IRELLLYLKKKYNPPPIYITENGVGDVNSSSWPISYALNDTVRVNYYNDHLSYILEAIK 380 (380)
Q Consensus 322 L~~~L~~i~~rY~~ppI~ITENG~~~~d~~~~~~~g~i~D~~Ri~Yl~~hL~~v~~Ai~ 380 (380)
||.+|+++++||++|||||||||++..++ ++ +|+++|++||+||++||++|++||+
T Consensus 324 l~~~L~~~~~rY~~ppi~ITENG~~~~d~--~~-~g~~~D~~Ri~yl~~hl~~~~~Ai~ 379 (427)
T TIGR03356 324 LYDLLLRLKEDYPGPPIYITENGAAFDDE--VT-DGEVHDPERIAYLRDHLAALARAIE 379 (427)
T ss_pred HHHHHHHHHHhcCCCCEEEeCCCCCcCCC--Cc-CCCcCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998889999999998775 34 7889999999999999999999984
No 14
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=99.37 E-value=1.4e-12 Score=129.55 Aligned_cols=109 Identities=25% Similarity=0.443 Sum_probs=87.6
Q ss_pred cCcHHHHHHHHHcCCCEEEe-ccccccccccCCCCCCccchHHHHHHHHHHHHHHCCCeEEEEcCCCCCcHhHHHhh---
Q 016924 19 FRYKEDIALVKQVGFDSIRF-SISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFHWDTPQALEDEY--- 94 (380)
Q Consensus 19 ~~~~eDi~l~~~lG~~~~R~-si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~~tL~h~~~P~~l~~~~--- 94 (380)
..+++|+++||++|+|++|+ .++|++++|+. |++|+ .++|++|+.+.++||++++.+.....|.||.+++
T Consensus 10 e~~~~d~~~m~~~G~n~vri~~~~W~~lEP~e---G~ydF---~~lD~~l~~a~~~Gi~viL~~~~~~~P~Wl~~~~Pe~ 83 (374)
T PF02449_consen 10 EEWEEDLRLMKEAGFNTVRIGEFSWSWLEPEE---GQYDF---SWLDRVLDLAAKHGIKVILGTPTAAPPAWLYDKYPEI 83 (374)
T ss_dssp CHHHHHHHHHHHHT-SEEEE-CCEHHHH-SBT---TB------HHHHHHHHHHHCTT-EEEEEECTTTS-HHHHCCSGCC
T ss_pred HHHHHHHHHHHHcCCCEEEEEEechhhccCCC---Ceeec---HHHHHHHHHHHhccCeEEEEecccccccchhhhcccc
Confidence 46899999999999999996 67999999998 99998 6689999999999999999999999999998654
Q ss_pred ------------CC-----CCChhhHHHHHHHHHHHHHHhCCc--CcEEEecCCCccc
Q 016924 95 ------------GG-----FLSPKIVKDFGDYADLCFKEFGDR--VKHWITLNEPETV 133 (380)
Q Consensus 95 ------------gg-----w~~~~~~~~f~~ya~~~~~~~~~~--v~~w~t~NEp~~~ 133 (380)
|+ ..+|...+.+.++++.++++|+++ |-.|.+.|||...
T Consensus 84 ~~~~~~g~~~~~g~~~~~~~~~p~yr~~~~~~~~~l~~~y~~~p~vi~~~i~NE~~~~ 141 (374)
T PF02449_consen 84 LPVDADGRRRGFGSRQHYCPNSPAYREYARRFIRALAERYGDHPAVIGWQIDNEPGYH 141 (374)
T ss_dssp C-B-TTTSBEECCCSTT-HCCHHHHHHHHHHHHHHHHHHHTTTTTEEEEEECCSTTCT
T ss_pred cccCCCCCcCccCCccccchhHHHHHHHHHHHHHHHHhhccccceEEEEEeccccCcC
Confidence 11 124567788888899999999987 6789999999763
No 15
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=99.31 E-value=6.5e-12 Score=118.80 Aligned_cols=109 Identities=17% Similarity=0.324 Sum_probs=90.6
Q ss_pred CcHHHHHHHHHcCCCEEEecccccccc-ccCCCCCCccchHHHHHHHHHHHHHHCCCeEEEEcCCCCCcHhHHHhhCCC-
Q 016924 20 RYKEDIALVKQVGFDSIRFSISWSRIL-PHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFHWDTPQALEDEYGGF- 97 (380)
Q Consensus 20 ~~~eDi~l~~~lG~~~~R~si~W~ri~-p~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~~tL~h~~~P~~l~~~~ggw- 97 (380)
..++|++.||++|+|++|+.|.|..++ |.. .+.++...++.++++|+.+.++||.++|+||+. |.|.... +++
T Consensus 22 ~~~~~~~~~~~~G~n~VRi~v~~~~~~~~~~--~~~~~~~~~~~ld~~v~~a~~~gi~vild~h~~--~~w~~~~-~~~~ 96 (281)
T PF00150_consen 22 ITEADFDQLKALGFNTVRIPVGWEAYQEPNP--GYNYDETYLARLDRIVDAAQAYGIYVILDLHNA--PGWANGG-DGYG 96 (281)
T ss_dssp SHHHHHHHHHHTTESEEEEEEESTSTSTTST--TTSBTHHHHHHHHHHHHHHHHTT-EEEEEEEES--TTCSSST-STTT
T ss_pred CHHHHHHHHHHCCCCEEEeCCCHHHhcCCCC--CccccHHHHHHHHHHHHHHHhCCCeEEEEeccC--ccccccc-cccc
Confidence 678999999999999999999998888 565 357999999999999999999999999999874 6664322 233
Q ss_pred CChhhHHHHHHHHHHHHHHhCC--cCcEEEecCCCccc
Q 016924 98 LSPKIVKDFGDYADLCFKEFGD--RVKHWITLNEPETV 133 (380)
Q Consensus 98 ~~~~~~~~f~~ya~~~~~~~~~--~v~~w~t~NEp~~~ 133 (380)
......+.|.++++.++++|++ .|..|.++|||...
T Consensus 97 ~~~~~~~~~~~~~~~la~~y~~~~~v~~~el~NEP~~~ 134 (281)
T PF00150_consen 97 NNDTAQAWFKSFWRALAKRYKDNPPVVGWELWNEPNGG 134 (281)
T ss_dssp THHHHHHHHHHHHHHHHHHHTTTTTTEEEESSSSGCST
T ss_pred cchhhHHHHHhhhhhhccccCCCCcEEEEEecCCcccc
Confidence 3345678899999999999954 47899999999874
No 16
>smart00633 Glyco_10 Glycosyl hydrolase family 10.
Probab=99.31 E-value=3.5e-10 Score=106.43 Aligned_cols=82 Identities=16% Similarity=0.297 Sum_probs=71.1
Q ss_pred ccccccccCCCCCCccchHHHHHHHHHHHHHHCCCeE--EEEcCCCCCcHhHHHhhCCCCChhhHHHHHHHHHHHHHHhC
Q 016924 41 SWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTP--FVTLFHWDTPQALEDEYGGFLSPKIVKDFGDYADLCFKEFG 118 (380)
Q Consensus 41 ~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p--~~tL~h~~~P~~l~~~~ggw~~~~~~~~f~~ya~~~~~~~~ 118 (380)
-|++++|++ |.+|+ +..|.+++.++++||++ .+.+.|...|.|+... + .++..+.+.+|++.+++||+
T Consensus 2 kW~~~ep~~---G~~n~---~~~D~~~~~a~~~gi~v~gH~l~W~~~~P~W~~~~-~---~~~~~~~~~~~i~~v~~ry~ 71 (254)
T smart00633 2 KWDSTEPSR---GQFNF---SGADAIVNFAKENGIKVRGHTLVWHSQTPDWVFNL-S---KETLLARLENHIKTVVGRYK 71 (254)
T ss_pred CcccccCCC---CccCh---HHHHHHHHHHHHCCCEEEEEEEeecccCCHhhhcC-C---HHHHHHHHHHHHHHHHHHhC
Confidence 599999997 99998 55788999999999995 4456777899998742 2 56778999999999999999
Q ss_pred CcCcEEEecCCCcc
Q 016924 119 DRVKHWITLNEPET 132 (380)
Q Consensus 119 ~~v~~w~t~NEp~~ 132 (380)
++|..|.++|||..
T Consensus 72 g~i~~wdV~NE~~~ 85 (254)
T smart00633 72 GKIYAWDVVNEALH 85 (254)
T ss_pred CcceEEEEeeeccc
Confidence 99999999999986
No 17
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=98.84 E-value=9.9e-07 Score=85.60 Aligned_cols=207 Identities=17% Similarity=0.309 Sum_probs=122.2
Q ss_pred HHHHHHHHHcCCCEEEeccccccccccCCCCCCccchHHHHHHHHHHHHHHCCCeEEEEcCC---CCCcHhHHHhhCCCC
Q 016924 22 KEDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFH---WDTPQALEDEYGGFL 98 (380)
Q Consensus 22 ~eDi~l~~~lG~~~~R~si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~~tL~h---~~~P~~l~~~~ggw~ 98 (380)
++=+++||+.|+|++|+-+ | +-|.. .|..| ++.-..+..+++++||+++|++|- |.=|.--... ..|.
T Consensus 27 ~d~~~ilk~~G~N~vRlRv-w--v~P~~--~g~~~---~~~~~~~akrak~~Gm~vlldfHYSD~WaDPg~Q~~P-~aW~ 97 (332)
T PF07745_consen 27 KDLFQILKDHGVNAVRLRV-W--VNPYD--GGYND---LEDVIALAKRAKAAGMKVLLDFHYSDFWADPGKQNKP-AAWA 97 (332)
T ss_dssp --HHHHHHHTT--EEEEEE----SS-TT--TTTTS---HHHHHHHHHHHHHTT-EEEEEE-SSSS--BTTB-B---TTCT
T ss_pred CCHHHHHHhcCCCeEEEEe-c--cCCcc--cccCC---HHHHHHHHHHHHHCCCeEEEeecccCCCCCCCCCCCC-ccCC
Confidence 4458999999999999977 5 23443 25555 467788999999999999999873 2222211111 4687
Q ss_pred C---hhhHHHHHHHHHHHHHHhCC---cCcEEEecCCCccccccccccCccCCCCCCCCCCCCCCCCCCChhHHHHHHHH
Q 016924 99 S---PKIVKDFGDYADLCFKEFGD---RVKHWITLNEPETVGECGYAKGTKAPGRCSNYIGNCPAGNSATEPYVAAHHLI 172 (380)
Q Consensus 99 ~---~~~~~~f~~ya~~~~~~~~~---~v~~w~t~NEp~~~~~~gy~~g~~~Pg~~~~~~~~~~~~~~~~~~~~~~h~~l 172 (380)
+ .+..+.-.+|.+.+.+.+.+ .++++.+=||.+.-. .+|-|.. ..+.-.-.++
T Consensus 98 ~~~~~~l~~~v~~yT~~vl~~l~~~G~~pd~VQVGNEin~Gm-------lwp~g~~--------------~~~~~~a~ll 156 (332)
T PF07745_consen 98 NLSFDQLAKAVYDYTKDVLQALKAAGVTPDMVQVGNEINNGM-------LWPDGKP--------------SNWDNLAKLL 156 (332)
T ss_dssp SSSHHHHHHHHHHHHHHHHHHHHHTT--ESEEEESSSGGGES-------TBTTTCT--------------T-HHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHCCCCccEEEeCccccccc-------cCcCCCc--------------cCHHHHHHHH
Confidence 7 56778888899988877644 578999999987532 2444431 2233344455
Q ss_pred HHHHHHHHHHHHHhhcCCCccEEEEecCCccccCCCCHHHHHHHHHHHHHhhccchhccccCCCChhHHHHhcccCCCCC
Q 016924 173 LSHATAVKLYRQNYQASQNGLIGITVSSIWAVPKFPTVASEKAAYRAIDFKFGWIFNPITYGSYPRSMQHLVGNRLPKFT 252 (380)
Q Consensus 173 ~Aha~a~~~~~~~~~~~~~~~iG~~~~~~~~~P~~~~~~d~~aa~~~~~~~~~~fldpi~~G~YP~~~~~~l~~~lp~~t 252 (380)
.|=.+| +|+. .|+.||.+.+.... |... ..||.|-+.
T Consensus 157 ~ag~~A---Vr~~---~p~~kV~lH~~~~~---------~~~~--------~~~~f~~l~-------------------- 193 (332)
T PF07745_consen 157 NAGIKA---VREV---DPNIKVMLHLANGG---------DNDL--------YRWFFDNLK-------------------- 193 (332)
T ss_dssp HHHHHH---HHTH---SSTSEEEEEES-TT---------SHHH--------HHHHHHHHH--------------------
T ss_pred HHHHHH---HHhc---CCCCcEEEEECCCC---------chHH--------HHHHHHHHH--------------------
Confidence 544444 4554 37788876554321 1111 123333321
Q ss_pred hhHHhHhcCCcceEEeecccceeeeccCCCCCCCCcccCCCccccccccCCCCCCCCCCCCCCccChHHHHHHHHHHHHH
Q 016924 253 KSQAEMVKGSVDFLGLNYYTADYAEEVTSFSNTNFSYTTDSRVNRTKEKNGFPLGQPTGSDWLSIYPKGIRELLLYLKKK 332 (380)
Q Consensus 253 ~~d~~~ik~~~DFiGiNyY~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~t~~gW~~i~P~gL~~~L~~i~~r 332 (380)
......|.||+|||.- |. -....|+..|+.|.+|
T Consensus 194 -----~~g~d~DviGlSyYP~----------------------------------------w~-~~l~~l~~~l~~l~~r 227 (332)
T PF07745_consen 194 -----AAGVDFDVIGLSYYPF----------------------------------------WH-GTLEDLKNNLNDLASR 227 (332)
T ss_dssp -----HTTGG-SEEEEEE-ST----------------------------------------TS-T-HHHHHHHHHHHHHH
T ss_pred -----hcCCCcceEEEecCCC----------------------------------------Cc-chHHHHHHHHHHHHHH
Confidence 1123569999999941 11 2457999999999999
Q ss_pred cCCCCEEEeeCCCCCC
Q 016924 333 YNPPPIYITENGVGDV 348 (380)
Q Consensus 333 Y~~ppI~ITENG~~~~ 348 (380)
|++| |+|+|.|++..
T Consensus 228 y~K~-V~V~Et~yp~t 242 (332)
T PF07745_consen 228 YGKP-VMVVETGYPWT 242 (332)
T ss_dssp HT-E-EEEEEE---SB
T ss_pred hCCe-eEEEecccccc
Confidence 9875 99999998876
No 18
>COG1874 LacA Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=98.54 E-value=2e-07 Score=97.51 Aligned_cols=118 Identities=19% Similarity=0.372 Sum_probs=90.2
Q ss_pred cHHHHHHHHHcCCCEEEe-ccccccccccCCCCCCccchHHHHHHHH-HHHHHHCCCeEEEEc-CCCCCcHhHHHhh---
Q 016924 21 YKEDIALVKQVGFDSIRF-SISWSRILPHGNISGGVNQQGVDFYNNL-INELISNGLTPFVTL-FHWDTPQALEDEY--- 94 (380)
Q Consensus 21 ~~eDi~l~~~lG~~~~R~-si~W~ri~p~~~~~g~~n~~~~~~y~~~-i~~l~~~gi~p~~tL-~h~~~P~~l~~~~--- 94 (380)
|++|+++||++|+|++|. -++|++++|+. |++|+. +.|.. ++.+.+.||.+++.- .....|.|+.++|
T Consensus 32 w~ddl~~mk~~G~N~V~ig~faW~~~eP~e---G~fdf~---~~D~~~l~~a~~~Gl~vil~t~P~g~~P~Wl~~~~Pei 105 (673)
T COG1874 32 WMDDLRKMKALGLNTVRIGYFAWNLHEPEE---GKFDFT---WLDEIFLERAYKAGLYVILRTGPTGAPPAWLAKKYPEI 105 (673)
T ss_pred HHHHHHHHHHhCCCeeEeeeEEeeccCccc---cccCcc---cchHHHHHHHHhcCceEEEecCCCCCCchHHhcCChhh
Confidence 678899999999999999 57999999997 999986 66776 999999999999988 7688999998765
Q ss_pred ------------CCCCChhhH-HHHHHHHHH----HHHH-hCCc--CcEEEecCCCcc-ccccccccCccC
Q 016924 95 ------------GGFLSPKIV-KDFGDYADL----CFKE-FGDR--VKHWITLNEPET-VGECGYAKGTKA 144 (380)
Q Consensus 95 ------------ggw~~~~~~-~~f~~ya~~----~~~~-~~~~--v~~w~t~NEp~~-~~~~gy~~g~~~ 144 (380)
|+|.+-... ..|.+|++. +.+| ||+. |-.|.+-||=.. .+.+.|....|+
T Consensus 106 L~~~~~~~~~~~g~r~~~~~~~~~Yr~~~~~i~~~irer~~~~~~~v~~w~~dneY~~~~~~~~~~~~~f~ 176 (673)
T COG1874 106 LAVDENGRVRSDGARENICPVSPVYREYLDRILQQIRERLYGNGPAVITWQNDNEYGGHPCYCDYCQAAFR 176 (673)
T ss_pred eEecCCCcccCCCcccccccccHHHHHHHHHHHHHHHHHHhccCCceeEEEccCccCCccccccccHHHHH
Confidence 455332222 236666666 7777 7776 678999998665 455555444443
No 19
>COG2730 BglC Endoglucanase [Carbohydrate transport and metabolism]
Probab=98.26 E-value=4.2e-06 Score=84.15 Aligned_cols=120 Identities=15% Similarity=0.203 Sum_probs=86.1
Q ss_pred ccCCcccCc-----HHHHHHHHHcCCCEEEeccccccccccCCCC-CCccchHHHHHHHHHHHHHHCCCeEEEEcCCCCC
Q 016924 13 VADNFYFRY-----KEDIALVKQVGFDSIRFSISWSRILPHGNIS-GGVNQQGVDFYNNLINELISNGLTPFVTLFHWDT 86 (380)
Q Consensus 13 ~a~~~y~~~-----~eDi~l~~~lG~~~~R~si~W~ri~p~~~~~-g~~n~~~~~~y~~~i~~l~~~gi~p~~tL~h~~~ 86 (380)
...-....| ++|+..||+.|+|++|+.|.|..+.+..... ...+...+.+.+++|+.+++.||.+++.||+..-
T Consensus 62 ~~~~~~~~w~~~~~~~~~~~ik~~G~n~VRiPi~~~~~~~~~~~~p~~~~~~~~~~ld~~I~~a~~~gi~V~iD~H~~~~ 141 (407)
T COG2730 62 AQGLLESHWGNFITEEDFDQIKSAGFNAVRIPIGYWALQATDGDNPYLIGLTQLKILDEAINWAKKLGIYVLIDLHGYPG 141 (407)
T ss_pred hcccchhccchhhhhhHHHHHHHcCCcEEEcccchhhhhccCCCCCCeecchHHHHHHHHHHHHHhcCeeEEEEecccCC
Confidence 334445556 8999999999999999999966665532001 2232455669999999999999999999998763
Q ss_pred cHhHHHhh---CCCC-ChhhHHHHHHHHHHHHHHhCCc--CcEEEecCCCcc
Q 016924 87 PQALEDEY---GGFL-SPKIVKDFGDYADLCFKEFGDR--VKHWITLNEPET 132 (380)
Q Consensus 87 P~~l~~~~---ggw~-~~~~~~~f~~ya~~~~~~~~~~--v~~w~t~NEp~~ 132 (380)
+.--.+.- +.+. ...+++.+.+-.+.++.+|++. |-...++|||+.
T Consensus 142 ~~~~~~~s~~~~~~~~~~~~~~~~~~~w~~ia~~f~~~~~VIg~~~~NEP~~ 193 (407)
T COG2730 142 GNNGHEHSGYTSDYKEENENVEATIDIWKFIANRFKNYDTVIGFELINEPNG 193 (407)
T ss_pred CCCCcCcccccccccccchhHHHHHHHHHHHHHhccCCCceeeeeeecCCcc
Confidence 22212110 1122 3557799999999999999984 344689999985
No 20
>PRK10150 beta-D-glucuronidase; Provisional
Probab=98.24 E-value=0.00013 Score=77.09 Aligned_cols=94 Identities=15% Similarity=0.122 Sum_probs=66.6
Q ss_pred cCcHHHHHHHHHcCCCEEEeccccccccccCCCCCCccchHHHHHHHHHHHHHHCCCeEEEEcCCCCCcHhHHH------
Q 016924 19 FRYKEDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFHWDTPQALED------ 92 (380)
Q Consensus 19 ~~~~eDi~l~~~lG~~~~R~si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~~tL~h~~~P~~l~~------ 92 (380)
..+..|+++||++|+|++|+|- .|.. ..+++.|=+.||=++.-+.-+....|...
T Consensus 313 ~~~~~d~~l~K~~G~N~vR~sh-----~p~~--------------~~~~~~cD~~GllV~~E~p~~~~~~~~~~~~~~~~ 373 (604)
T PRK10150 313 VLNVHDHNLMKWIGANSFRTSH-----YPYS--------------EEMLDLADRHGIVVIDETPAVGLNLSFGAGLEAGN 373 (604)
T ss_pred HHHHHHHHHHHHCCCCEEEecc-----CCCC--------------HHHHHHHHhcCcEEEEecccccccccccccccccc
Confidence 3478899999999999999962 3432 46788899999988876533322222210
Q ss_pred -hhCCCC----ChhhHHHHHHHHHHHHHHhCCc--CcEEEecCCCc
Q 016924 93 -EYGGFL----SPKIVKDFGDYADLCFKEFGDR--VKHWITLNEPE 131 (380)
Q Consensus 93 -~~ggw~----~~~~~~~f~~ya~~~~~~~~~~--v~~w~t~NEp~ 131 (380)
....|. +++..+.+.+-++.++++..++ |-.|.+.||+.
T Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~mv~r~~NHPSIi~Ws~gNE~~ 419 (604)
T PRK10150 374 KPKETYSEEAVNGETQQAHLQAIRELIARDKNHPSVVMWSIANEPA 419 (604)
T ss_pred cccccccccccchhHHHHHHHHHHHHHHhccCCceEEEEeeccCCC
Confidence 001232 3567788889999999999998 57999999963
No 21
>PF01229 Glyco_hydro_39: Glycosyl hydrolases family 39; InterPro: IPR000514 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 39 GH39 from CAZY comprises enzymes with several known activities; alpha-L-iduronidase (3.2.1.76 from EC); beta-xylosidase (3.2.1.37 from EC). The most highly conserved regions in these enzymes are located in their N-terminal sections. These contain a glutamic acid residue which, on the basis of similarities with other families of glycosyl hydrolases [], probably acts as the proton donor in their catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BS9_D 2BFG_E 1W91_B 1UHV_D 1PX8_A.
Probab=98.15 E-value=9.3e-06 Score=83.52 Aligned_cols=106 Identities=26% Similarity=0.468 Sum_probs=63.4
Q ss_pred cHHHHHHH-HHcCCCEEEec--c--ccccccc-cCCCCCC--ccchHHHHHHHHHHHHHHCCCeEEEEcCCCCCcHhHHH
Q 016924 21 YKEDIALV-KQVGFDSIRFS--I--SWSRILP-HGNISGG--VNQQGVDFYNNLINELISNGLTPFVTLFHWDTPQALED 92 (380)
Q Consensus 21 ~~eDi~l~-~~lG~~~~R~s--i--~W~ri~p-~~~~~g~--~n~~~~~~y~~~i~~l~~~gi~p~~tL~h~~~P~~l~~ 92 (380)
+.+.+..+ +++|++.+||- + +..-... ++ +|. +|+ ...|+++|.|+++||+|+|.|.. +|.++..
T Consensus 41 ~q~~l~~~~~~~gf~yvR~h~l~~ddm~~~~~~~~--~~~~~Ynf---~~lD~i~D~l~~~g~~P~vel~f--~p~~~~~ 113 (486)
T PF01229_consen 41 WQEQLRELQEELGFRYVRFHGLFSDDMMVYSESDE--DGIPPYNF---TYLDQILDFLLENGLKPFVELGF--MPMALAS 113 (486)
T ss_dssp HHHHHHHHHCCS--SEEEES-TTSTTTT-EEEEET--TEEEEE-----HHHHHHHHHHHHCT-EEEEEE-S--B-GGGBS
T ss_pred HHHHHHHHHhccCceEEEEEeeccCchhhcccccc--CCCCcCCh---HHHHHHHHHHHHcCCEEEEEEEe--chhhhcC
Confidence 44555555 49999999996 3 2221222 22 132 676 77899999999999999999974 6777642
Q ss_pred h------hCCCC-ChhhHHHHHHHHHHHHHHhCC-----cCc--EEEecCCCccc
Q 016924 93 E------YGGFL-SPKIVKDFGDYADLCFKEFGD-----RVK--HWITLNEPETV 133 (380)
Q Consensus 93 ~------~ggw~-~~~~~~~f~~ya~~~~~~~~~-----~v~--~w~t~NEp~~~ 133 (380)
. +.||. .|+..+.|.++++.+++|+-+ .|. +|++||||++.
T Consensus 114 ~~~~~~~~~~~~~pp~~~~~W~~lv~~~~~h~~~RYG~~ev~~W~fEiWNEPd~~ 168 (486)
T PF01229_consen 114 GYQTVFWYKGNISPPKDYEKWRDLVRAFARHYIDRYGIEEVSTWYFEIWNEPDLK 168 (486)
T ss_dssp S--EETTTTEE-S-BS-HHHHHHHHHHHHHHHHHHHHHHHHTTSEEEESS-TTST
T ss_pred CCCccccccCCcCCcccHHHHHHHHHHHHHHHHhhcCCccccceeEEeCcCCCcc
Confidence 2 12222 356778888888777765543 355 56899999984
No 22
>PF00331 Glyco_hydro_10: Glycosyl hydrolase family 10; InterPro: IPR001000 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 10 GH10 from CAZY comprises enzymes with a number of known activities; xylanase (3.2.1.8 from EC); endo-1,3-beta-xylanase (3.2.1.32 from EC); cellobiohydrolase (3.2.1.91 from EC). These enzymes were formerly known as cellulase family F. The microbial degradation of cellulose and xylans requires several types of enzymes such as endoglucanases (3.2.1.4 from EC), cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) [, ]. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family F [] or as the glycosyl hydrolases family 10 []. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1UQZ_A 1UQY_A 1UR2_A 1UR1_A 2CNC_A 1OD8_A 1E0W_A 1E0V_A 1V0M_A 1E0X_B ....
Probab=98.10 E-value=0.00069 Score=65.96 Aligned_cols=113 Identities=17% Similarity=0.208 Sum_probs=80.4
Q ss_pred ccCCcccCcHH-HHHHHHHcCCCEEEec--cccccccccCCCCCCccchHHHHHHHHHHHHHHCCCeEEE--EcCCCCCc
Q 016924 13 VADNFYFRYKE-DIALVKQVGFDSIRFS--ISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFV--TLFHWDTP 87 (380)
Q Consensus 13 ~a~~~y~~~~e-Di~l~~~lG~~~~R~s--i~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~~--tL~h~~~P 87 (380)
.|.++.+...+ ....+-.--+|.+-.. .-|..++|.. |.+|++ ..|++++-++++||++-- .+.|--.|
T Consensus 14 ~av~~~~~~~~~~~~~~~~~~Fn~~t~eN~~Kw~~~e~~~---g~~~~~---~~D~~~~~a~~~g~~vrGH~LvW~~~~P 87 (320)
T PF00331_consen 14 AAVNAQQLEDDPRYRELFAKHFNSVTPENEMKWGSIEPEP---GRFNFE---SADAILDWARENGIKVRGHTLVWHSQTP 87 (320)
T ss_dssp EEEBGGGHTHHHHHHHHHHHH-SEEEESSTTSHHHHESBT---TBEE-H---HHHHHHHHHHHTT-EEEEEEEEESSSS-
T ss_pred EEechhHcCCcHHHHHHHHHhCCeeeeccccchhhhcCCC---CccCcc---chhHHHHHHHhcCcceeeeeEEEccccc
Confidence 34444443333 3555555667777665 7899999997 999984 579999999999999973 45566789
Q ss_pred HhHHHhhCCCCChh---hHHHHHHHHHHHHHHhCC--cCcEEEecCCCcc
Q 016924 88 QALEDEYGGFLSPK---IVKDFGDYADLCFKEFGD--RVKHWITLNEPET 132 (380)
Q Consensus 88 ~~l~~~~ggw~~~~---~~~~f~~ya~~~~~~~~~--~v~~w~t~NEp~~ 132 (380)
.|+... .-+...+ ..+...+|.+.+++||++ +|..|-++|||..
T Consensus 88 ~w~~~~-~~~~~~~~~~~~~~l~~~I~~v~~~y~~~g~i~~WDVvNE~i~ 136 (320)
T PF00331_consen 88 DWVFNL-ANGSPDEKEELRARLENHIKTVVTRYKDKGRIYAWDVVNEAID 136 (320)
T ss_dssp HHHHTS-TTSSBHHHHHHHHHHHHHHHHHHHHTTTTTTESEEEEEES-B-
T ss_pred ceeeec-cCCCcccHHHHHHHHHHHHHHHHhHhccccceEEEEEeeeccc
Confidence 999853 1233333 778899999999999995 8999999999865
No 23
>PF01301 Glyco_hydro_35: Glycosyl hydrolases family 35; InterPro: IPR001944 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 35 GH35 from CAZY comprises enzymes with only one known activity; beta-galactosidase (3.2.1.23 from EC). Mammalian beta-galactosidase is a lysosomal enzyme (gene GLB1) which cleaves the terminal galactose from gangliosides, glycoproteins, and glycosaminoglycans and whose deficiency is the cause of the genetic disease Gm(1) gangliosidosis (Morquio disease type B).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3OGS_A 3OGV_A 3OGR_A 3OG2_A 1TG7_A 1XC6_A 3THC_C 3THD_D 3D3A_A 4E8D_B ....
Probab=97.90 E-value=4.8e-05 Score=73.98 Aligned_cols=107 Identities=15% Similarity=0.200 Sum_probs=71.2
Q ss_pred cHHHHHHHHHcCCCEEEeccccccccccCCCCCCccchHHHHHHHHHHHHHHCCCeEEEEcC---C--C---CCcHhHHH
Q 016924 21 YKEDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLF---H--W---DTPQALED 92 (380)
Q Consensus 21 ~~eDi~l~~~lG~~~~R~si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~~tL~---h--~---~~P~~l~~ 92 (380)
|++-++.||++|+|++-+-|.|.-.+|.. |++|+++..-.+++|+.++++|+.+++-.- | | .+|.||..
T Consensus 26 W~~~l~k~ka~G~n~v~~yv~W~~he~~~---g~~df~g~~dl~~f~~~a~~~gl~vilrpGpyi~aE~~~gG~P~Wl~~ 102 (319)
T PF01301_consen 26 WRDRLQKMKAAGLNTVSTYVPWNLHEPEE---GQFDFTGNRDLDRFLDLAQENGLYVILRPGPYICAEWDNGGLPAWLLR 102 (319)
T ss_dssp HHHHHHHHHHTT-SEEEEE--HHHHSSBT---TB---SGGG-HHHHHHHHHHTT-EEEEEEES---TTBGGGG--GGGGG
T ss_pred HHHHHHHHHhCCcceEEEeccccccCCCC---CcccccchhhHHHHHHHHHHcCcEEEecccceecccccchhhhhhhhc
Confidence 77889999999999999999999999997 999999988899999999999999887532 1 3 38999987
Q ss_pred hhCCC---CChhhHHHHHHHHHHHHHHhCCc-------CcEEEecCCC
Q 016924 93 EYGGF---LSPKIVKDFGDYADLCFKEFGDR-------VKHWITLNEP 130 (380)
Q Consensus 93 ~~ggw---~~~~~~~~f~~ya~~~~~~~~~~-------v~~w~t~NEp 130 (380)
+.+.. .++...+.-.+|.+.+++...+. |-.-++=||.
T Consensus 103 ~~~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~GGpII~vQvENEy 150 (319)
T PF01301_consen 103 KPDIRLRTNDPPFLEAVERWYRALAKIIKPLQYTNGGPIIMVQVENEY 150 (319)
T ss_dssp STTS-SSSS-HHHHHHHHHHHHHHHHHHGGGBGGGTSSEEEEEESSSG
T ss_pred cccccccccchhHHHHHHHHHHHHHHHHHhhhhcCCCceehhhhhhhh
Confidence 63332 24556666666666666655432 3445566663
No 24
>PLN03059 beta-galactosidase; Provisional
Probab=97.52 E-value=0.00065 Score=72.84 Aligned_cols=99 Identities=16% Similarity=0.165 Sum_probs=79.7
Q ss_pred CCcccC-----cHHHHHHHHHcCCCEEEeccccccccccCCCCCCccchHHHHHHHHHHHHHHCCCeEEEEcC-------
Q 016924 15 DNFYFR-----YKEDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLF------- 82 (380)
Q Consensus 15 ~~~y~~-----~~eDi~l~~~lG~~~~R~si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~~tL~------- 82 (380)
.=||-| |++=++.||++|+|++-.=|-|.-.+|.+ |++|++|..=..++|+.+.+.|+-+|+-.-
T Consensus 50 ~iHY~R~~p~~W~d~L~k~Ka~GlNtV~tYV~Wn~HEp~~---G~~dF~G~~DL~~Fl~la~e~GLyvilRpGPYIcAEw 126 (840)
T PLN03059 50 SIHYPRSTPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPSP---GNYYFEDRYDLVKFIKVVQAAGLYVHLRIGPYICAEW 126 (840)
T ss_pred CcccCcCCHHHHHHHHHHHHHcCCCeEEEEecccccCCCC---CeeeccchHHHHHHHHHHHHcCCEEEecCCcceeeee
Confidence 456755 77779999999999999999999999997 999999999999999999999999988643
Q ss_pred -CCCCcHhHHHhhCCCC----ChhhHHHHHHHHHHHHHHh
Q 016924 83 -HWDTPQALEDEYGGFL----SPKIVKDFGDYADLCFKEF 117 (380)
Q Consensus 83 -h~~~P~~l~~~~ggw~----~~~~~~~f~~ya~~~~~~~ 117 (380)
.-.+|.||... .|.. ++...++-.+|.+.++...
T Consensus 127 ~~GGlP~WL~~~-~~i~~Rs~d~~fl~~v~~~~~~l~~~l 165 (840)
T PLN03059 127 NFGGFPVWLKYV-PGIEFRTDNGPFKAAMQKFTEKIVDMM 165 (840)
T ss_pred cCCCCchhhhcC-CCcccccCCHHHHHHHHHHHHHHHHHH
Confidence 23689999854 5532 4556666666666666665
No 25
>COG3693 XynA Beta-1,4-xylanase [Carbohydrate transport and metabolism]
Probab=97.44 E-value=0.026 Score=54.06 Aligned_cols=85 Identities=18% Similarity=0.280 Sum_probs=69.2
Q ss_pred cccccccccCCCCCCccchHHHHHHHHHHHHHHCCCeEEE-E-cCCCCCcHhHHHhhCCCCChhhHHHHHHHHHHHHHHh
Q 016924 40 ISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFV-T-LFHWDTPQALEDEYGGFLSPKIVKDFGDYADLCFKEF 117 (380)
Q Consensus 40 i~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~~-t-L~h~~~P~~l~~~~ggw~~~~~~~~f~~ya~~~~~~~ 117 (380)
.-|.-|+|+. |.+|+++ =|.+++-+++|||..-- | +.|--.|.|+.. .-+..+...+...++-..|++||
T Consensus 67 mKwe~i~p~~---G~f~Fe~---AD~ia~FAr~h~m~lhGHtLvW~~q~P~W~~~--~e~~~~~~~~~~e~hI~tV~~rY 138 (345)
T COG3693 67 MKWEAIEPER---GRFNFEA---ADAIANFARKHNMPLHGHTLVWHSQVPDWLFG--DELSKEALAKMVEEHIKTVVGRY 138 (345)
T ss_pred cccccccCCC---CccCccc---hHHHHHHHHHcCCeeccceeeecccCCchhhc--cccChHHHHHHHHHHHHHHHHhc
Confidence 4588888875 8999865 58899999999997653 2 234457889863 23777889999999999999999
Q ss_pred CCcCcEEEecCCCcc
Q 016924 118 GDRVKHWITLNEPET 132 (380)
Q Consensus 118 ~~~v~~w~t~NEp~~ 132 (380)
.+.|..|-+.|||.-
T Consensus 139 kg~~~sWDVVNE~vd 153 (345)
T COG3693 139 KGSVASWDVVNEAVD 153 (345)
T ss_pred cCceeEEEecccccC
Confidence 999999999999965
No 26
>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]
Probab=97.31 E-value=0.04 Score=52.16 Aligned_cols=240 Identities=15% Similarity=0.278 Sum_probs=131.9
Q ss_pred HHHHHHHHHcCCCEEEecccccccccc-C-CCCCCccchHHHHHHHHHHHHHHCCCeEEEEcC---CCCCcHhHHHhhCC
Q 016924 22 KEDIALVKQVGFDSIRFSISWSRILPH-G-NISGGVNQQGVDFYNNLINELISNGLTPFVTLF---HWDTPQALEDEYGG 96 (380)
Q Consensus 22 ~eDi~l~~~lG~~~~R~si~W~ri~p~-~-~~~g~~n~~~~~~y~~~i~~l~~~gi~p~~tL~---h~~~P~~l~~~~gg 96 (380)
++-++.+|+.|+|.+|+-| |..-..+ + ...|.-| .++.--.+-..++++||++++.+| ||.=|..-. +-..
T Consensus 66 qD~~~iLK~~GvNyvRlRv-wndP~dsngn~yggGnn--D~~k~ieiakRAk~~GmKVl~dFHYSDfwaDPakQ~-kPka 141 (403)
T COG3867 66 QDALQILKNHGVNYVRLRV-WNDPYDSNGNGYGGGNN--DLKKAIEIAKRAKNLGMKVLLDFHYSDFWADPAKQK-KPKA 141 (403)
T ss_pred HHHHHHHHHcCcCeEEEEE-ecCCccCCCCccCCCcc--hHHHHHHHHHHHHhcCcEEEeeccchhhccChhhcC-CcHH
Confidence 3347999999999999865 3222111 1 0001122 134456677788999999999987 455564321 2134
Q ss_pred CCC---hhhHHHHHHHHHHHHHHh---CCcCcEEEecCCCccccccccccCccCCCCCCCCCCCCCCCCCCChhHHHHHH
Q 016924 97 FLS---PKIVKDFGDYADLCFKEF---GDRVKHWITLNEPETVGECGYAKGTKAPGRCSNYIGNCPAGNSATEPYVAAHH 170 (380)
Q Consensus 97 w~~---~~~~~~f~~ya~~~~~~~---~~~v~~w~t~NEp~~~~~~gy~~g~~~Pg~~~~~~~~~~~~~~~~~~~~~~h~ 170 (380)
|.+ ++.-.+.-+|.+.+.+.+ |-....-.+=||-+- |+ .||-|... .+.-+-.
T Consensus 142 W~~l~fe~lk~avy~yTk~~l~~m~~eGi~pdmVQVGNEtn~----gf---lwp~Ge~~--------------~f~k~a~ 200 (403)
T COG3867 142 WENLNFEQLKKAVYSYTKYVLTTMKKEGILPDMVQVGNETNG----GF---LWPDGEGR--------------NFDKMAA 200 (403)
T ss_pred hhhcCHHHHHHHHHHHHHHHHHHHHHcCCCccceEeccccCC----ce---eccCCCCc--------------ChHHHHH
Confidence 654 223344455666666555 444567789999663 22 25655321 1222223
Q ss_pred HHHHHHHHHHHHHHHhhcCCCccEEEEecCCccccCCCCHHHHHHHHHHHHHhhccchhccccCCCChhHHHHhcccCCC
Q 016924 171 LILSHATAVKLYRQNYQASQNGLIGITVSSIWAVPKFPTVASEKAAYRAIDFKFGWIFNPITYGSYPRSMQHLVGNRLPK 250 (380)
Q Consensus 171 ~l~Aha~a~~~~~~~~~~~~~~~iG~~~~~~~~~P~~~~~~d~~aa~~~~~~~~~~fldpi~~G~YP~~~~~~l~~~lp~ 250 (380)
++. .+++++|+. .|.-+|-+.+. .|.+++ ..+|+.|-+.+
T Consensus 201 L~n---~g~~avrev---~p~ikv~lHla----~g~~n~-------------~y~~~fd~ltk----------------- 240 (403)
T COG3867 201 LLN---AGIRAVREV---SPTIKVALHLA----EGENNS-------------LYRWIFDELTK----------------- 240 (403)
T ss_pred HHH---HHhhhhhhc---CCCceEEEEec----CCCCCc-------------hhhHHHHHHHH-----------------
Confidence 444 345556664 36666655442 233332 12344443321
Q ss_pred CChhHHhHhcCCcceEEeecccceeeeccCCCCCCCCcccCCCccccccccCCCCCCCCCCCCCCccChHHHHHHHHHHH
Q 016924 251 FTKSQAEMVKGSVDFLGLNYYTADYAEEVTSFSNTNFSYTTDSRVNRTKEKNGFPLGQPTGSDWLSIYPKGIRELLLYLK 330 (380)
Q Consensus 251 ~t~~d~~~ik~~~DFiGiNyY~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~t~~gW~~i~P~gL~~~L~~i~ 330 (380)
-.-+.|.||++||.=- . -.=..|...|..+.
T Consensus 241 --------~nvdfDVig~SyYpyW--h---------------------------------------gtl~nL~~nl~dia 271 (403)
T COG3867 241 --------RNVDFDVIGSSYYPYW--H---------------------------------------GTLNNLTTNLNDIA 271 (403)
T ss_pred --------cCCCceEEeeeccccc--c---------------------------------------CcHHHHHhHHHHHH
Confidence 1236799999999410 0 01136777799999
Q ss_pred HHcCCCCEEEeeCCCCCCCCC-----C-CCCCC-----ccCChhHHHHHHHHHHHHH
Q 016924 331 KKYNPPPIYITENGVGDVNSS-----S-WPISY-----ALNDTVRVNYYNDHLSYIL 376 (380)
Q Consensus 331 ~rY~~ppI~ITENG~~~~d~~-----~-~~~~g-----~i~D~~Ri~Yl~~hL~~v~ 376 (380)
.||+.. ++|.|.+.+..-|+ . -+..+ .+.=+-...|+|+-|+.|.
T Consensus 272 ~rY~K~-VmV~Etay~yTlEdgDg~~Nt~~~~~~t~~ypitVQGQat~vrDvie~V~ 327 (403)
T COG3867 272 SRYHKD-VMVVETAYTYTLEDGDGHENTFPSSEQTGGYPITVQGQATFVRDVIEAVK 327 (403)
T ss_pred HHhcCe-EEEEEecceeeeccCCCCCCcCCcccccCCCceEEechhhHHHHHHHHHH
Confidence 999875 99988876432110 0 01111 1111345668888877765
No 27
>PF01373 Glyco_hydro_14: Glycosyl hydrolase family 14; InterPro: IPR001554 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 14 GH14 from CAZY comprises enzymes with only one known activity; beta-amylase (3.2.1.2 from EC). A Glu residue has been proposed as a catalytic residue, but it is not known if it is the nucleophile or the proton donor. Beta-amylase [, ] is an enzyme that hydrolyses 1,4-alpha-glucosidic linkages in starch-type polysaccharide substrates so as to remove successive maltose units from the non-reducing ends of the chains. Beta-amylase is present in certain bacteria as well as in plants. Three highly conserved sequence regions are found in all known beta-amylases. The first of these regions is located in the N-terminal section of the enzymes and contains an aspartate which is known [] to be involved in the catalytic mechanism. The second, located in a more central location, is centred around a glutamate which is also involved [] in the catalytic mechanism. The 3D structure of a complex of soybean beta-amylase with an inhibitor (alpha-cyclodextrin) has been determined to 3.0A resolution by X-ray diffraction []. The enzyme folds into large and small domains: the large domain has a (beta alpha)8 super-secondary structural core, while the smaller is formed from two long loops extending from the beta-3 and beta-4 strands of the (beta alpha)8 fold []. The interface of the two domains, together with shorter loops from the (beta alpha)8 core, form a deep cleft, in which the inhibitor binds []. Two maltose molecules also bind in the cleft, one sharing a binding site with alpha-cyclodextrin, and the other sitting more deeply in the cleft [].; GO: 0016161 beta-amylase activity, 0000272 polysaccharide catabolic process; PDB: 1FA2_A 2DQX_A 1WDP_A 1UKP_C 1BYC_A 1BYA_A 1Q6C_A 1V3I_A 1BTC_A 1BYB_A ....
Probab=96.93 E-value=0.0023 Score=63.21 Aligned_cols=107 Identities=18% Similarity=0.303 Sum_probs=80.4
Q ss_pred ccCcHHHHHHHHHcCCCEEEeccccccccccCCCCCCccchHHHHHHHHHHHHHHCCCeEEEEcC-C-----------CC
Q 016924 18 YFRYKEDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLF-H-----------WD 85 (380)
Q Consensus 18 y~~~~eDi~l~~~lG~~~~R~si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~~tL~-h-----------~~ 85 (380)
+.-.+..++.+|++|+..+-+.+=|.-+|..+ .+++|+ ..|+++++.+++.|++..+.|. | ..
T Consensus 15 ~~~~~~~L~~LK~~GV~GVmvdvWWGiVE~~~--p~~ydW---s~Y~~l~~~vr~~GLk~~~vmsfH~cGgNvgD~~~Ip 89 (402)
T PF01373_consen 15 WNALEAQLRALKSAGVDGVMVDVWWGIVEGEG--PQQYDW---SGYRELFEMVRDAGLKLQVVMSFHQCGGNVGDDCNIP 89 (402)
T ss_dssp CHHHHHHHHHHHHTTEEEEEEEEEHHHHTGSS--TTB------HHHHHHHHHHHHTT-EEEEEEE-S-BSSSTTSSSEB-
T ss_pred HHHHHHHHHHHHHcCCcEEEEEeEeeeeccCC--CCccCc---HHHHHHHHHHHHcCCeEEEEEeeecCCCCCCCccCCc
Confidence 44778899999999999999999999999987 489998 5599999999999999988763 3 46
Q ss_pred CcHhHHHh-----------hCC--------CCChhhHHHHHHHHHHHHHHhCCcCcEEEecCCCcc
Q 016924 86 TPQALEDE-----------YGG--------FLSPKIVKDFGDYADLCFKEFGDRVKHWITLNEPET 132 (380)
Q Consensus 86 ~P~~l~~~-----------~gg--------w~~~~~~~~f~~ya~~~~~~~~~~v~~w~t~NEp~~ 132 (380)
||.|+.+. .|. |....+++.+.+|-+.+.++|.+.. -|+-|..+
T Consensus 90 LP~Wv~~~~~~~di~ytd~~G~rn~E~lSp~~~grt~~~Y~dfm~sF~~~f~~~~---~~I~~I~v 152 (402)
T PF01373_consen 90 LPSWVWEIGKKDDIFYTDRSGNRNKEYLSPVLDGRTLQCYSDFMRSFRDNFSDYL---STITEIQV 152 (402)
T ss_dssp S-HHHHHHHHHSGGEEE-TTS-EEEEEE-CTBTTBCHHHHHHHHHHHHHHCHHHH---TGEEEEEE
T ss_pred CCHHHHhccccCCcEEECCCCCcCcceeecccCCchHHHHHHHHHHHHHHHHHHH---hhheEEEe
Confidence 89998643 122 4444459999999999999997764 56666443
No 28
>PF14587 Glyco_hydr_30_2: O-Glycosyl hydrolase family 30; PDB: 3CLW_B.
Probab=96.89 E-value=0.0095 Score=58.69 Aligned_cols=99 Identities=22% Similarity=0.307 Sum_probs=54.8
Q ss_pred HcCCCEEEecc---cc------------cccc--ccCCCCCCccchHHHHHHHHHHHHHHCCCeEEEEcCCCCCcHhHHH
Q 016924 30 QVGFDSIRFSI---SW------------SRIL--PHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFHWDTPQALED 92 (380)
Q Consensus 30 ~lG~~~~R~si---~W------------~ri~--p~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~~tL~h~~~P~~l~~ 92 (380)
-+|++.+||.| ++ .|.+ +.. +|.+|+.+=+-=+.++++++++|+.-++. +-+..|.|+..
T Consensus 58 GlGLSI~RyNIGgGs~~~~d~~~i~~~~rr~e~f~~~--dg~yDW~~D~gQrwfL~~Ak~rGV~~f~a-FSNSPP~~MT~ 134 (384)
T PF14587_consen 58 GLGLSIWRYNIGGGSAEQGDSSGIRDPWRRAESFLPA--DGSYDWDADAGQRWFLKAAKERGVNIFEA-FSNSPPWWMTK 134 (384)
T ss_dssp S---S-EEEE---STTTTTTSS--SSSTT----SB-T--TS-B-TTSSHHHHHHHHHHHHTT---EEE-E-SSS-GGGSS
T ss_pred CceeeeeeeccccCCcccccCccCCCcccCCccccCC--CCCcCCCCCHHHHHHHHHHHHcCCCeEEE-eecCCCHHHhc
Confidence 49999999988 33 3332 222 47777655444556899999999998874 45677777653
Q ss_pred hhC----C-----CCChhhHHHHHHHHHHHHHHh---CCcCcEEEecCCCcc
Q 016924 93 EYG----G-----FLSPKIVKDFGDYADLCFKEF---GDRVKHWITLNEPET 132 (380)
Q Consensus 93 ~~g----g-----w~~~~~~~~f~~ya~~~~~~~---~~~v~~w~t~NEp~~ 132 (380)
. | + =+.++..+.|+.|-..|+++| |=.+++-.++|||+.
T Consensus 135 N-G~~~g~~~~~~NLk~d~y~~FA~YLa~Vv~~~~~~GI~f~~IsP~NEP~~ 185 (384)
T PF14587_consen 135 N-GSASGGDDGSDNLKPDNYDAFADYLADVVKHYKKWGINFDYISPFNEPQW 185 (384)
T ss_dssp S-SSSB-S-SSS-SS-TT-HHHHHHHHHHHHHHHHCTT--EEEEE--S-TTS
T ss_pred C-CCCCCCCccccccChhHHHHHHHHHHHHHHHHHhcCCccceeCCcCCCCC
Confidence 2 2 1 246778999999999999998 334788899999984
No 29
>PF13204 DUF4038: Protein of unknown function (DUF4038); PDB: 3KZS_D.
Probab=96.83 E-value=0.013 Score=56.27 Aligned_cols=101 Identities=16% Similarity=0.245 Sum_probs=61.7
Q ss_pred HHHHHHcCCCEEEecc--ccccc-----cccCCC---C------CCccchHHHHHHHHHHHHHHCCCeEEEEcCCCCCcH
Q 016924 25 IALVKQVGFDSIRFSI--SWSRI-----LPHGNI---S------GGVNQQGVDFYNNLINELISNGLTPFVTLFHWDTPQ 88 (380)
Q Consensus 25 i~l~~~lG~~~~R~si--~W~ri-----~p~~~~---~------g~~n~~~~~~y~~~i~~l~~~gi~p~~tL~h~~~P~ 88 (380)
++..|+-|+|.+|+.+ .|.+. .|.... + ..+|++-+++.+++|+.|.+.||+|.+.+.| +.|.
T Consensus 36 L~~r~~qgFN~iq~~~l~~~~~~~~~n~~~~~~~~~~~~~~~d~~~~N~~YF~~~d~~i~~a~~~Gi~~~lv~~w-g~~~ 114 (289)
T PF13204_consen 36 LDTRKEQGFNVIQMNVLPQWDGYNTPNRYGFAPFPDEDPGQFDFTRPNPAYFDHLDRRIEKANELGIEAALVPFW-GCPY 114 (289)
T ss_dssp HHHHHHTT--EEEEES-SSSS-B----TTS-BS-SSTT------TT----HHHHHHHHHHHHHHTT-EEEEESS--HHHH
T ss_pred HHHHHHCCCCEEEEEeCCCcccccccccCCCcCCCCCCccccCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEEEE-CCcc
Confidence 6778999999999997 34433 111100 0 1389999999999999999999999988765 2221
Q ss_pred hHHHhhCCCCC---hhhHHHHHHHHHHHHHHhCCc-CcEEEecCCC
Q 016924 89 ALEDEYGGFLS---PKIVKDFGDYADLCFKEFGDR-VKHWITLNEP 130 (380)
Q Consensus 89 ~l~~~~ggw~~---~~~~~~f~~ya~~~~~~~~~~-v~~w~t~NEp 130 (380)
.+ +.|.. .-..+.-.+|.+.|++||+.. =..|++-||-
T Consensus 115 ---~~-~~Wg~~~~~m~~e~~~~Y~~yv~~Ry~~~~NviW~l~gd~ 156 (289)
T PF13204_consen 115 ---VP-GTWGFGPNIMPPENAERYGRYVVARYGAYPNVIWILGGDY 156 (289)
T ss_dssp ---H--------TTSS-HHHHHHHHHHHHHHHTT-SSEEEEEESSS
T ss_pred ---cc-ccccccccCCCHHHHHHHHHHHHHHHhcCCCCEEEecCcc
Confidence 11 44532 224677888999999999998 4778988884
No 30
>PF02836 Glyco_hydro_2_C: Glycosyl hydrolases family 2, TIM barrel domain; InterPro: IPR006103 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. Beta-galactosidase from E. coli has a TIM-barrel-like core surrounded by four other largely beta domains [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3CMG_A 3FN9_C 1YQ2_A 3K4D_B 3LPG_B 3LPF_A 3K4A_B 3K46_B 3GM8_A 3DEC_A ....
Probab=96.81 E-value=0.0074 Score=58.01 Aligned_cols=93 Identities=15% Similarity=0.170 Sum_probs=62.6
Q ss_pred cccCcHHHHHHHHHcCCCEEEeccccccccccCCCCCCccchHHHHHHHHHHHHHHCCCeEEEEcCCCCCcHhHHHhhCC
Q 016924 17 FYFRYKEDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFHWDTPQALEDEYGG 96 (380)
Q Consensus 17 ~y~~~~eDi~l~~~lG~~~~R~si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~~tL~h~~~P~~l~~~~gg 96 (380)
....++.|+.+||++|+|++|++-- |.. .++++.|-+.||-++.-+.....-.|- ..+-
T Consensus 34 ~~~~~~~d~~l~k~~G~N~iR~~h~-----p~~--------------~~~~~~cD~~GilV~~e~~~~~~~~~~--~~~~ 92 (298)
T PF02836_consen 34 PDEAMERDLELMKEMGFNAIRTHHY-----PPS--------------PRFYDLCDELGILVWQEIPLEGHGSWQ--DFGN 92 (298)
T ss_dssp -HHHHHHHHHHHHHTT-SEEEETTS-------S--------------HHHHHHHHHHT-EEEEE-S-BSCTSSS--STSC
T ss_pred CHHHHHHHHHHHHhcCcceEEcccc-----cCc--------------HHHHHHHhhcCCEEEEeccccccCccc--cCCc
Confidence 3567899999999999999999542 332 456778889999999776432211111 0010
Q ss_pred ----CCChhhHHHHHHHHHHHHHHhCCc--CcEEEecCCC
Q 016924 97 ----FLSPKIVKDFGDYADLCFKEFGDR--VKHWITLNEP 130 (380)
Q Consensus 97 ----w~~~~~~~~f~~ya~~~~~~~~~~--v~~w~t~NEp 130 (380)
-.+++..+.+.+-++.+++++.++ |-.|.+.||+
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~v~~~~NHPSIi~W~~gNE~ 132 (298)
T PF02836_consen 93 CNYDADDPEFRENAEQELREMVRRDRNHPSIIMWSLGNES 132 (298)
T ss_dssp TSCTTTSGGHHHHHHHHHHHHHHHHTT-TTEEEEEEEESS
T ss_pred cccCCCCHHHHHHHHHHHHHHHHcCcCcCchheeecCccC
Confidence 125778888888899999999887 6899999998
No 31
>PLN02803 beta-amylase
Probab=96.78 E-value=0.0055 Score=62.19 Aligned_cols=106 Identities=18% Similarity=0.310 Sum_probs=82.6
Q ss_pred CcHHHHHHHHHcCCCEEEeccccccccccCCCCCCccchHHHHHHHHHHHHHHCCCeEEEEcC-C-----------CCCc
Q 016924 20 RYKEDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLF-H-----------WDTP 87 (380)
Q Consensus 20 ~~~eDi~l~~~lG~~~~R~si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~~tL~-h-----------~~~P 87 (380)
-.+..++.+|++|+..+-+.+=|.-+|..+ .+++|| ..|+++++.+++.|++..+.|. | ..||
T Consensus 108 ~l~~~L~~LK~~GVdGVmvDVWWGiVE~~~--p~~YdW---sgY~~l~~mvr~~GLKlq~vmSFHqCGGNVGD~~~IpLP 182 (548)
T PLN02803 108 AMNASLMALRSAGVEGVMVDAWWGLVEKDG--PMKYNW---EGYAELVQMVQKHGLKLQVVMSFHQCGGNVGDSCSIPLP 182 (548)
T ss_pred HHHHHHHHHHHcCCCEEEEEeeeeeeccCC--CCcCCc---HHHHHHHHHHHHcCCeEEEEEEecccCCCCCCcccccCC
Confidence 367789999999999999999999999987 599998 4599999999999999888775 3 2599
Q ss_pred HhHHHh--------h---CC----------------CCChhhHHHHHHHHHHHHHHhCCcCcEEEecCCCcc
Q 016924 88 QALEDE--------Y---GG----------------FLSPKIVKDFGDYADLCFKEFGDRVKHWITLNEPET 132 (380)
Q Consensus 88 ~~l~~~--------~---gg----------------w~~~~~~~~f~~ya~~~~~~~~~~v~~w~t~NEp~~ 132 (380)
+|+.+. | .| +..+.-++.+.+|-+.....|.+... -|+.|..+
T Consensus 183 ~WV~e~~~~~pDi~ftDr~G~rn~EyLSlg~D~~pvl~GRTplq~Y~Dfm~SFr~~F~~~l~--~~I~eI~V 252 (548)
T PLN02803 183 PWVLEEMSKNPDLVYTDRSGRRNPEYISLGCDSLPVLRGRTPIQVYSDYMRSFRERFKDYLG--GVIAEIQV 252 (548)
T ss_pred HHHHHhhhcCCCceEecCCCCcccceeccccccchhccCCCHHHHHHHHHHHHHHHHHHHhc--CceEEEEe
Confidence 998752 0 12 12333457788888888888877553 46777554
No 32
>PLN00197 beta-amylase; Provisional
Probab=96.74 E-value=0.0066 Score=61.83 Aligned_cols=106 Identities=21% Similarity=0.288 Sum_probs=83.0
Q ss_pred CcHHHHHHHHHcCCCEEEeccccccccccCCCCCCccchHHHHHHHHHHHHHHCCCeEEEEcC-C-----------CCCc
Q 016924 20 RYKEDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLF-H-----------WDTP 87 (380)
Q Consensus 20 ~~~eDi~l~~~lG~~~~R~si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~~tL~-h-----------~~~P 87 (380)
-.+..++.+|++|+..+-+.+=|.-+|..+ .+++||. .|+++++.+++.|++..+.|. | ..||
T Consensus 128 ~l~~~L~~LK~~GVdGVmvDvWWGiVE~~~--p~~YdWs---gY~~L~~mvr~~GLKlq~VmSFHqCGGNVGD~~~IpLP 202 (573)
T PLN00197 128 AMKASLQALKSAGVEGIMMDVWWGLVERES--PGVYNWG---GYNELLEMAKRHGLKVQAVMSFHQCGGNVGDSCTIPLP 202 (573)
T ss_pred HHHHHHHHHHHcCCCEEEEeeeeeeeccCC--CCcCCcH---HHHHHHHHHHHcCCeEEEEEEecccCCCCCCcccccCC
Confidence 367889999999999999999999999987 5999995 599999999999999888775 3 2599
Q ss_pred HhHHHh--------h---CCC----------------CChhhHHHHHHHHHHHHHHhCCcCcEEEecCCCcc
Q 016924 88 QALEDE--------Y---GGF----------------LSPKIVKDFGDYADLCFKEFGDRVKHWITLNEPET 132 (380)
Q Consensus 88 ~~l~~~--------~---ggw----------------~~~~~~~~f~~ya~~~~~~~~~~v~~w~t~NEp~~ 132 (380)
+|+.+. | .|- ..|.-++.+.+|-+....+|.+... -|+.|..+
T Consensus 203 ~WV~~~g~~dpDifftDr~G~rn~EyLSlg~D~~pvl~GRTpiq~Y~DFM~SFr~~F~~~l~--~~I~eI~V 272 (573)
T PLN00197 203 KWVVEEVDKDPDLAYTDQWGRRNYEYVSLGCDTLPVLKGRTPVQCYADFMRAFRDNFKHLLG--DTIVEIQV 272 (573)
T ss_pred HHHHHhhccCCCceeecCCCCcccceeccccccccccCCCCHHHHHHHHHHHHHHHHHHHhc--CceeEEEe
Confidence 998652 0 121 1233368888998888888877654 36777554
No 33
>PLN02161 beta-amylase
Probab=96.67 E-value=0.009 Score=60.39 Aligned_cols=111 Identities=17% Similarity=0.237 Sum_probs=86.2
Q ss_pred CCcccCcHHHHHHHHHcCCCEEEeccccccccccCCCCCCccchHHHHHHHHHHHHHHCCCeEEEEcC-CC---------
Q 016924 15 DNFYFRYKEDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLF-HW--------- 84 (380)
Q Consensus 15 ~~~y~~~~eDi~l~~~lG~~~~R~si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~~tL~-h~--------- 84 (380)
.++..-.+..++.+|.+|+..+-+.+=|.-+|..+ .+++|+ ..|+++++.+++.|++..+.|. |-
T Consensus 113 v~~~~al~~~L~~LK~~GVdGVmvDVWWGiVE~~~--p~~YdW---sgY~~l~~mvr~~GLKlq~vmSFHqCGGNvGd~~ 187 (531)
T PLN02161 113 IKRLKALTVSLKALKLAGVHGIAVEVWWGIVERFS--PLEFKW---SLYEELFRLISEAGLKLHVALCFHSNMHLFGGKG 187 (531)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEEEeeeeeeecCC--CCcCCc---HHHHHHHHHHHHcCCeEEEEEEecccCCCCCCcc
Confidence 45666678899999999999999999999999987 599998 5599999999999999888775 32
Q ss_pred --CCcHhHHHh--------h---CC----------------CCChhhHHHHHHHHHHHHHHhCCcCcEEEecCCCcc
Q 016924 85 --DTPQALEDE--------Y---GG----------------FLSPKIVKDFGDYADLCFKEFGDRVKHWITLNEPET 132 (380)
Q Consensus 85 --~~P~~l~~~--------~---gg----------------w~~~~~~~~f~~ya~~~~~~~~~~v~~w~t~NEp~~ 132 (380)
.||.|+.+. | .| +..+.-++.+.+|-+...++|.+... -|+.|..+
T Consensus 188 ~IpLP~WV~~~g~~~pDi~ftDr~G~rn~EyLSlg~D~~pvl~GRTplq~Y~Dfm~SFr~~F~~~~~--~~I~eI~V 262 (531)
T PLN02161 188 GISLPLWIREIGDVNKDIYYRDKNGFSNNDYLTLGVDQLPLFGGRTAVQCYEDFMLSFSTKFEPYIG--NVIEEISI 262 (531)
T ss_pred CccCCHHHHhhhccCCCceEEcCCCCcccceeeeecccchhcCCCCHHHHHHHHHHHHHHHHHHHhc--CceEEEEe
Confidence 499998752 0 12 12333457888888888888877553 46666554
No 34
>PLN02801 beta-amylase
Probab=96.62 E-value=0.013 Score=59.35 Aligned_cols=97 Identities=21% Similarity=0.351 Sum_probs=77.3
Q ss_pred CcHHHHHHHHHcCCCEEEeccccccccccCCCCCCccchHHHHHHHHHHHHHHCCCeEEEEcCC------------CCCc
Q 016924 20 RYKEDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFH------------WDTP 87 (380)
Q Consensus 20 ~~~eDi~l~~~lG~~~~R~si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~~tL~h------------~~~P 87 (380)
-.+..++.+|++|+..+-+.+=|.-+|..+ .+++|+. .|+++++.+++.|++..+.|.- ..+|
T Consensus 38 ~l~~~L~~LK~~GVdGVmvDVWWGiVE~~~--P~~YdWs---gY~~l~~mvr~~GLKlq~vmSFHqCGGNVGD~~~IpLP 112 (517)
T PLN02801 38 GLEKQLKRLKEAGVDGVMVDVWWGIVESKG--PKQYDWS---AYRSLFELVQSFGLKIQAIMSFHQCGGNVGDAVNIPIP 112 (517)
T ss_pred HHHHHHHHHHHcCCCEEEEeeeeeeeccCC--CCccCcH---HHHHHHHHHHHcCCeEEEEEEecccCCCCCCcccccCC
Confidence 467889999999999999999999999987 4899984 5999999999999998877653 3599
Q ss_pred HhHHHh--------h---CC----------------CCChhhHHHHHHHHHHHHHHhCCcC
Q 016924 88 QALEDE--------Y---GG----------------FLSPKIVKDFGDYADLCFKEFGDRV 121 (380)
Q Consensus 88 ~~l~~~--------~---gg----------------w~~~~~~~~f~~ya~~~~~~~~~~v 121 (380)
+|+.+. | .| +..+.-++.+.+|-+...++|.+..
T Consensus 113 ~WV~~~g~~~pDi~ftDr~G~rn~EyLSlg~D~~pvl~GRTplq~Y~Dfm~SFr~~F~~~l 173 (517)
T PLN02801 113 QWVRDVGDSDPDIFYTNRSGNRNKEYLSIGVDNLPLFHGRTAVEMYSDYMKSFRENMADFL 173 (517)
T ss_pred HHHHHhhccCCCceeecCCCCcCcceeeeccCcccccCCCCHHHHHHHHHHHHHHHHHHhc
Confidence 998752 0 12 1223346888888888888887743
No 35
>PLN02905 beta-amylase
Probab=96.42 E-value=0.018 Score=59.56 Aligned_cols=112 Identities=14% Similarity=0.157 Sum_probs=83.9
Q ss_pred CCcccCcHHHHHHHHHcCCCEEEeccccccccccCCCCCCccchHHHHHHHHHHHHHHCCCeEEEEcCCC----------
Q 016924 15 DNFYFRYKEDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFHW---------- 84 (380)
Q Consensus 15 ~~~y~~~~eDi~l~~~lG~~~~R~si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~~tL~h~---------- 84 (380)
..+..-.+..+..+|.+|+..+-+.+=|.-+|..+ .+++|| ..|.++++.+++.|++..+.|...
T Consensus 282 l~~~~al~a~L~aLK~aGVdGVmvDVWWGiVE~~g--P~~YdW---sgY~~L~~mvr~~GLKlqvVMSFHqCGGNVGD~~ 356 (702)
T PLN02905 282 LADPDGLLKQLRILKSINVDGVKVDCWWGIVEAHA--PQEYNW---NGYKRLFQMVRELKLKLQVVMSFHECGGNVGDDV 356 (702)
T ss_pred ccCHHHHHHHHHHHHHcCCCEEEEeeeeeeeecCC--CCcCCc---HHHHHHHHHHHHcCCeEEEEEEecccCCCCCCcc
Confidence 34555678899999999999999999999999987 599998 459999999999999988877532
Q ss_pred --CCcHhHHHh--------h---CCC----------------CChhhHHHHHHHHHHHHHHhCCcCcEEEecCCCcc
Q 016924 85 --DTPQALEDE--------Y---GGF----------------LSPKIVKDFGDYADLCFKEFGDRVKHWITLNEPET 132 (380)
Q Consensus 85 --~~P~~l~~~--------~---ggw----------------~~~~~~~~f~~ya~~~~~~~~~~v~~w~t~NEp~~ 132 (380)
.||+|+.+. | .|. ..+.-++.|.+|-+.+..+|.+...- -|+.|..+
T Consensus 357 ~IPLP~WV~e~g~~nPDifftDrsG~rn~EyLSlg~D~~pvl~GRTplq~Y~DFM~SFr~~F~~fl~~-g~I~eI~V 432 (702)
T PLN02905 357 CIPLPHWVAEIGRSNPDIFFTDREGRRNPECLSWGIDKERILRGRTALEVYFDYMRSFRVEFDEFFED-GVISMVEV 432 (702)
T ss_pred cccCCHHHHHhhhcCCCceEecCCCCccCceeeeecccccccCCCCHHHHHHHHHHHHHHHHHHHhcC-CceEEEEe
Confidence 699998752 0 121 12345688888888888888664211 25555444
No 36
>PLN02705 beta-amylase
Probab=96.35 E-value=0.016 Score=59.65 Aligned_cols=109 Identities=16% Similarity=0.146 Sum_probs=81.6
Q ss_pred ccCcHHHHHHHHHcCCCEEEeccccccccccCCCCCCccchHHHHHHHHHHHHHHCCCeEEEEcC-C-----------CC
Q 016924 18 YFRYKEDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLF-H-----------WD 85 (380)
Q Consensus 18 y~~~~eDi~l~~~lG~~~~R~si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~~tL~-h-----------~~ 85 (380)
-.-.+..++.||.+|+..+-+.+=|.-+|..+ .+++|| ..|.++++.+++.|++..+.|. | ..
T Consensus 267 ~~al~a~L~aLK~aGVdGVmvDVWWGiVE~~~--P~~YdW---sgY~~L~~mvr~~GLKlqvVmSFHqCGGNVGD~~~IP 341 (681)
T PLN02705 267 PEGVRQELSHMKSLNVDGVVVDCWWGIVEGWN--PQKYVW---SGYRELFNIIREFKLKLQVVMAFHEYGGNASGNVMIS 341 (681)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeeeeeEeecCC--CCcCCc---HHHHHHHHHHHHcCCeEEEEEEeeccCCCCCCccccc
Confidence 34477889999999999999999999999987 489998 4599999999999999887775 3 25
Q ss_pred CcHhHHHh--------h---CCC----------------CChhhHHHHHHHHHHHHHHhCCcCcEEEecCCCcc
Q 016924 86 TPQALEDE--------Y---GGF----------------LSPKIVKDFGDYADLCFKEFGDRVKHWITLNEPET 132 (380)
Q Consensus 86 ~P~~l~~~--------~---ggw----------------~~~~~~~~f~~ya~~~~~~~~~~v~~w~t~NEp~~ 132 (380)
||.|+.+. | .|- ..+.-++.|.+|.+.+...|.+...- -|+.|..+
T Consensus 342 LP~WV~e~g~~nPDifftDr~G~rn~EyLSlg~D~~pvl~GRTplq~Y~DFM~SFr~~F~~fl~~-g~I~eI~V 414 (681)
T PLN02705 342 LPQWVLEIGKDNQDIFFTDREGRRNTECLSWSIDKERVLKGRTGIEVYFDFMRSFRSEFDDLFVE-GLITAVEI 414 (681)
T ss_pred CCHHHHHhcccCCCceeecCCCCcccceeeeecCcccccCCCCHHHHHHHHHHHHHHHHHHhccC-CceeEEEe
Confidence 99998752 0 121 12334588888888888888764210 25555444
No 37
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=96.15 E-value=0.05 Score=47.85 Aligned_cols=104 Identities=19% Similarity=0.395 Sum_probs=66.8
Q ss_pred CcHHHHHHHHHcCCCEEEecccccccc-----ccCCCCCCccchHHHHHHHHHHHHHHCCCeEEEEcCCCCCcHhHHHhh
Q 016924 20 RYKEDIALVKQVGFDSIRFSISWSRIL-----PHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFHWDTPQALEDEY 94 (380)
Q Consensus 20 ~~~eDi~l~~~lG~~~~R~si~W~ri~-----p~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~~tL~h~~~P~~l~~~~ 94 (380)
+|+++++.|+++|++++=+- |+... |+....+.+.....+....+++++.+.||++++.|+. -|.|...
T Consensus 21 ~W~~~~~~m~~~GidtlIlq--~~~~~~~~~yps~~~~~~~~~~~~d~l~~~L~~A~~~Gmkv~~Gl~~--~~~~w~~-- 94 (166)
T PF14488_consen 21 QWREEFRAMKAIGIDTLILQ--WTGYGGFAFYPSKLSPGGFYMPPVDLLEMILDAADKYGMKVFVGLYF--DPDYWDQ-- 94 (166)
T ss_pred HHHHHHHHHHHcCCcEEEEE--EeecCCcccCCccccCccccCCcccHHHHHHHHHHHcCCEEEEeCCC--Cchhhhc--
Confidence 48999999999999987543 54442 3320001233344578999999999999999999974 3555542
Q ss_pred CCCCChh-hHHHHHHHHHHHHHHhCCc--CcEEEecCCCcc
Q 016924 95 GGFLSPK-IVKDFGDYADLCFKEFGDR--VKHWITLNEPET 132 (380)
Q Consensus 95 ggw~~~~-~~~~f~~ya~~~~~~~~~~--v~~w~t~NEp~~ 132 (380)
.+.+ -++.=..-++.+.++||.+ +..|-+=.|+.-
T Consensus 95 ---~~~~~~~~~~~~v~~el~~~yg~h~sf~GWYip~E~~~ 132 (166)
T PF14488_consen 95 ---GDLDWEAERNKQVADELWQRYGHHPSFYGWYIPYEIDD 132 (166)
T ss_pred ---cCHHHHHHHHHHHHHHHHHHHcCCCCCceEEEecccCC
Confidence 1111 2223334666777888886 456666666543
No 38
>KOG0496 consensus Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=95.76 E-value=0.053 Score=56.48 Aligned_cols=98 Identities=16% Similarity=0.173 Sum_probs=80.4
Q ss_pred CCcccC-----cHHHHHHHHHcCCCEEEeccccccccccCCCCCCccchHHHHHHHHHHHHHHCCCeEEEEcC-------
Q 016924 15 DNFYFR-----YKEDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLF------- 82 (380)
Q Consensus 15 ~~~y~~-----~~eDi~l~~~lG~~~~R~si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~~tL~------- 82 (380)
+=||-| |++=|+.+|++|+|++-.=+-|.-.+|.. |++|.+|.-=..++|..+.++|+-+++-+-
T Consensus 40 sIHY~R~~pe~W~~~i~k~k~~Gln~IqtYVfWn~Hep~~---g~y~FsG~~DlvkFikl~~~~GLyv~LRiGPyIcaEw 116 (649)
T KOG0496|consen 40 SIHYPRSTPEMWPDLIKKAKAGGLNVIQTYVFWNLHEPSP---GKYDFSGRYDLVKFIKLIHKAGLYVILRIGPYICAEW 116 (649)
T ss_pred ccccccCChhhhHHHHHHHHhcCCceeeeeeecccccCCC---CcccccchhHHHHHHHHHHHCCeEEEecCCCeEEecc
Confidence 446655 77779999999999999999999999998 899999988888999999999998777543
Q ss_pred -CCCCcHhHHHhhCCC----CChhhHHHHHHHHHHHHHH
Q 016924 83 -HWDTPQALEDEYGGF----LSPKIVKDFGDYADLCFKE 116 (380)
Q Consensus 83 -h~~~P~~l~~~~ggw----~~~~~~~~f~~ya~~~~~~ 116 (380)
+=.+|.||... .|- .|+.+..++.+|.+.++..
T Consensus 117 ~~GG~P~wL~~~-pg~~~Rt~nepfk~~~~~~~~~iv~~ 154 (649)
T KOG0496|consen 117 NFGGLPWWLRNV-PGIVFRTDNEPFKAEMERWTTKIVPM 154 (649)
T ss_pred cCCCcchhhhhC-CceEEecCChHHHHHHHHHHHHHHHH
Confidence 34689888764 553 3677888888888888873
No 39
>PRK09525 lacZ beta-D-galactosidase; Reviewed
Probab=94.63 E-value=0.14 Score=57.45 Aligned_cols=94 Identities=16% Similarity=0.053 Sum_probs=64.7
Q ss_pred cccCcHHHHHHHHHcCCCEEEeccccccccccCCCCCCccchHHHHHHHHHHHHHHCCCeEEEEcCCCCCcHhHHHhhCC
Q 016924 17 FYFRYKEDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFHWDTPQALEDEYGG 96 (380)
Q Consensus 17 ~y~~~~eDi~l~~~lG~~~~R~si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~~tL~h~~~P~~l~~~~gg 96 (380)
....++.||++||++|+|++|+| ..|.. ..+.+.|=+.||=++--..-.....+... ..
T Consensus 369 t~e~~~~di~lmK~~g~NaVR~s-----HyP~~--------------p~fydlcDe~GilV~dE~~~e~hg~~~~~--~~ 427 (1027)
T PRK09525 369 DEETMVQDILLMKQHNFNAVRCS-----HYPNH--------------PLWYELCDRYGLYVVDEANIETHGMVPMN--RL 427 (1027)
T ss_pred CHHHHHHHHHHHHHCCCCEEEec-----CCCCC--------------HHHHHHHHHcCCEEEEecCccccCCcccc--CC
Confidence 45678999999999999999996 23432 34567888899988866421111100000 01
Q ss_pred CCChhhHHHHHHHHHHHHHHhCCc--CcEEEecCCCc
Q 016924 97 FLSPKIVKDFGDYADLCFKEFGDR--VKHWITLNEPE 131 (380)
Q Consensus 97 w~~~~~~~~f~~ya~~~~~~~~~~--v~~w~t~NEp~ 131 (380)
..+++..+.+.+=++.+++|.+++ |-.|...||+.
T Consensus 428 ~~dp~~~~~~~~~~~~mV~RdrNHPSIi~WSlgNE~~ 464 (1027)
T PRK09525 428 SDDPRWLPAMSERVTRMVQRDRNHPSIIIWSLGNESG 464 (1027)
T ss_pred CCCHHHHHHHHHHHHHHHHhCCCCCEEEEEeCccCCC
Confidence 124666677777788999999998 67999999975
No 40
>PRK10340 ebgA cryptic beta-D-galactosidase subunit alpha; Reviewed
Probab=93.86 E-value=0.25 Score=55.50 Aligned_cols=91 Identities=19% Similarity=0.156 Sum_probs=64.3
Q ss_pred cccCcHHHHHHHHHcCCCEEEeccccccccccCCCCCCccchHHHHHHHHHHHHHHCCCeEEEEc----CCCCCcHhHHH
Q 016924 17 FYFRYKEDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTL----FHWDTPQALED 92 (380)
Q Consensus 17 ~y~~~~eDi~l~~~lG~~~~R~si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~~tL----~h~~~P~~l~~ 92 (380)
....++.|+++||++|+|++|+|. .|.. ..+.+.|=+.||=++--. +.|....
T Consensus 353 ~~e~~~~dl~lmK~~g~NavR~sH-----yP~~--------------~~fydlcDe~GllV~dE~~~e~~g~~~~~---- 409 (1021)
T PRK10340 353 GMDRVEKDIQLMKQHNINSVRTAH-----YPND--------------PRFYELCDIYGLFVMAETDVESHGFANVG---- 409 (1021)
T ss_pred CHHHHHHHHHHHHHCCCCEEEecC-----CCCC--------------HHHHHHHHHCCCEEEECCcccccCccccc----
Confidence 346789999999999999999962 4543 456788889999887653 1121110
Q ss_pred hhCCC--CChhhHHHHHHHHHHHHHHhCCc--CcEEEecCCCc
Q 016924 93 EYGGF--LSPKIVKDFGDYADLCFKEFGDR--VKHWITLNEPE 131 (380)
Q Consensus 93 ~~ggw--~~~~~~~~f~~ya~~~~~~~~~~--v~~w~t~NEp~ 131 (380)
.+ .| .++...+.|.+=++.+++|.+++ |-.|..-||..
T Consensus 410 ~~-~~~~~~p~~~~~~~~~~~~mV~RdrNHPSIi~WslGNE~~ 451 (1021)
T PRK10340 410 DI-SRITDDPQWEKVYVDRIVRHIHAQKNHPSIIIWSLGNESG 451 (1021)
T ss_pred cc-ccccCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccCcc
Confidence 00 01 23445567777788999999998 67999999973
No 41
>COG3250 LacZ Beta-galactosidase/beta-glucuronidase [Carbohydrate transport and metabolism]
Probab=92.94 E-value=0.68 Score=50.51 Aligned_cols=90 Identities=17% Similarity=0.123 Sum_probs=67.0
Q ss_pred CCcccCcHHHHHHHHHcCCCEEEeccccccccccCCCCCCccchHHHHHHHHHHHHHHCCCeEEEEcCCCCCcHhHHHhh
Q 016924 15 DNFYFRYKEDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFHWDTPQALEDEY 94 (380)
Q Consensus 15 ~~~y~~~~eDi~l~~~lG~~~~R~si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~~tL~h~~~P~~l~~~~ 94 (380)
+-.+..+..|+++||++|+|++|.| -.|.. ..+.+.|=+.||=++=-..+.. +
T Consensus 317 ~~~~~~~~~dl~lmk~~n~N~vRts-----HyP~~--------------~~~ydLcDelGllV~~Ea~~~~--------~ 369 (808)
T COG3250 317 VTDEDAMERDLKLMKEANMNSVRTS-----HYPNS--------------EEFYDLCDELGLLVIDEAMIET--------H 369 (808)
T ss_pred ccCHHHHHHHHHHHHHcCCCEEEec-----CCCCC--------------HHHHHHHHHhCcEEEEecchhh--------c
Confidence 3344558999999999999999998 55664 4566788888998886654321 1
Q ss_pred CCCCChhhHHHHHHHHHHHHHHhCCc--CcEEEecCCCc
Q 016924 95 GGFLSPKIVKDFGDYADLCFKEFGDR--VKHWITLNEPE 131 (380)
Q Consensus 95 ggw~~~~~~~~f~~ya~~~~~~~~~~--v~~w~t~NEp~ 131 (380)
++...++..+...+=++.+++|-.++ |-.|..-||..
T Consensus 370 ~~~~~~~~~k~~~~~i~~mver~knHPSIiiWs~gNE~~ 408 (808)
T COG3250 370 GMPDDPEWRKEVSEEVRRMVERDRNHPSIIIWSLGNESG 408 (808)
T ss_pred CCCCCcchhHHHHHHHHHHHHhccCCCcEEEEecccccc
Confidence 33455666667777788888888887 67999999965
No 42
>COG3664 XynB Beta-xylosidase [Carbohydrate transport and metabolism]
Probab=92.74 E-value=0.17 Score=50.10 Aligned_cols=100 Identities=15% Similarity=0.299 Sum_probs=72.5
Q ss_pred HHHcCCCEEEeccccccccccCCCCCCccchHHHHHHHHHHHHHHCCCeEEEEcCCCCCcHhHHHhhCCCCC--hhhHHH
Q 016924 28 VKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFHWDTPQALEDEYGGFLS--PKIVKD 105 (380)
Q Consensus 28 ~~~lG~~~~R~si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~~tL~h~~~P~~l~~~~ggw~~--~~~~~~ 105 (380)
-+|+|++.+|.---|.=++-.. -+++ .++++++|.+...|+.-+.+-.||..+.-...+|.+=.. ....+.
T Consensus 14 ~~Ei~v~yi~~~~v~h~~~q~~----~~~~---t~~d~i~d~~~~~~~~~ie~~l~~~~l~~~~~~wq~n~~~~~~~~dl 86 (428)
T COG3664 14 DDEIQVNYIRRHGVWHVNAQKL----FYPF---TYIDEIIDTLLDLGLDLIELFLIWNNLNTKEHQWQLNVDDPKSVFDL 86 (428)
T ss_pred hhhhceeeehhcceeeeeeccc----cCCh---HHHHHHHHHHHHhccHHHHHhhcccchhhhhhhcccccCCcHhHHHH
Confidence 3789999999988888222221 2444 789999999999995555566678777655544433222 247899
Q ss_pred HHHHHHHHHHHhCCc-CcEE--EecCCCcccc
Q 016924 106 FGDYADLCFKEFGDR-VKHW--ITLNEPETVG 134 (380)
Q Consensus 106 f~~ya~~~~~~~~~~-v~~w--~t~NEp~~~~ 134 (380)
++.++..|+.++|-+ |.-| ..+||||..+
T Consensus 87 ~~~fl~h~~~~vg~e~v~kw~f~~~~~pn~~a 118 (428)
T COG3664 87 IAAFLKHVIRRVGVEFVRKWPFYSPNEPNLLA 118 (428)
T ss_pred HHHHHHHHHHHhChhheeecceeecCCCCccc
Confidence 999999999999965 4545 7999999874
No 43
>PF11790 Glyco_hydro_cc: Glycosyl hydrolase catalytic core; InterPro: IPR024655 This entry represents the glycosyl hydrolase catalytic core of a group of uncharacterised proteins.
Probab=91.85 E-value=0.43 Score=44.44 Aligned_cols=51 Identities=22% Similarity=0.398 Sum_probs=38.6
Q ss_pred hHHHHHHHHHHHHHcCCCCEEEeeCCCCCCCCCCCCCCCccCChhHHHHHHHHHHHHHH
Q 016924 319 PKGIRELLLYLKKKYNPPPIYITENGVGDVNSSSWPISYALNDTVRVNYYNDHLSYILE 377 (380)
Q Consensus 319 P~gL~~~L~~i~~rY~~ppI~ITENG~~~~d~~~~~~~g~i~D~~Ri~Yl~~hL~~v~~ 377 (380)
+.++...|..++++|+.| |.|||-|+..... .-.+..-.+|+++-+..|.+
T Consensus 150 ~~~~~~~i~~~~~~~~kP-IWITEf~~~~~~~-------~~~~~~~~~fl~~~~~~ld~ 200 (239)
T PF11790_consen 150 ADDFKDYIDDLHNRYGKP-IWITEFGCWNGGS-------QGSDEQQASFLRQALPWLDS 200 (239)
T ss_pred HHHHHHHHHHHHHHhCCC-EEEEeecccCCCC-------CCCHHHHHHHHHHHHHHHhc
Confidence 457888999999999965 9999999865211 12366788888888877753
No 44
>PF07488 Glyco_hydro_67M: Glycosyl hydrolase family 67 middle domain; InterPro: IPR011100 Alpha-glucuronidases, components of an ensemble of enzymes central to the recycling of photosynthetic biomass, remove the alpha-1,2 linked 4-O-methyl glucuronic acid from xylans. This family represents the central catalytic domain of alpha-glucuronidase [].; GO: 0046559 alpha-glucuronidase activity, 0045493 xylan catabolic process, 0005576 extracellular region; PDB: 1MQP_A 1K9E_A 1MQQ_A 1L8N_A 1K9D_A 1MQR_A 1K9F_A 1GQL_A 1GQI_B 1GQJ_B ....
Probab=89.84 E-value=2.7 Score=40.28 Aligned_cols=87 Identities=20% Similarity=0.444 Sum_probs=62.4
Q ss_pred ccCcHHHHHHHHHcCCCEEEec-c--ccccccccCCCCCCccchHHHHHHHHHHHHHHCCCeEEEEcCCCCCcHhHHHhh
Q 016924 18 YFRYKEDIALVKQVGFDSIRFS-I--SWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFHWDTPQALEDEY 94 (380)
Q Consensus 18 y~~~~eDi~l~~~lG~~~~R~s-i--~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~~tL~h~~~P~~l~~~~ 94 (380)
..||.+-.++++++|+|.+-+. + .- ++ +..+-++.+.++-+.++..||++.+++. |..|.-+
T Consensus 56 ~~R~~~YARllASiGINgvvlNNVNa~~-~~---------Lt~~~l~~v~~lAdvfRpYGIkv~LSvn-FasP~~l---- 120 (328)
T PF07488_consen 56 LTRYRDYARLLASIGINGVVLNNVNANP-KL---------LTPEYLDKVARLADVFRPYGIKVYLSVN-FASPIEL---- 120 (328)
T ss_dssp -HHHHHHHHHHHHTT--EEE-S-SS--C-GG---------GSTTTHHHHHHHHHHHHHTT-EEEEEE--TTHHHHT----
T ss_pred hhHHHHHHHHHhhcCCceEEecccccCh-hh---------cCHHHHHHHHHHHHHHhhcCCEEEEEee-ccCCccc----
Confidence 4578888999999999998765 2 21 22 2223467789999999999999999986 7778643
Q ss_pred CCC-----CChhhHHHHHHHHHHHHHHhCC
Q 016924 95 GGF-----LSPKIVKDFGDYADLCFKEFGD 119 (380)
Q Consensus 95 ggw-----~~~~~~~~f~~ya~~~~~~~~~ 119 (380)
||- ++++++.+|.+=++.+.++..|
T Consensus 121 ggL~TaDPld~~V~~WW~~k~~eIY~~IPD 150 (328)
T PF07488_consen 121 GGLPTADPLDPEVRQWWKDKADEIYSAIPD 150 (328)
T ss_dssp TS-S---TTSHHHHHHHHHHHHHHHHH-TT
T ss_pred CCcCcCCCCCHHHHHHHHHHHHHHHHhCCC
Confidence 553 5899999999999999998866
No 45
>COG3934 Endo-beta-mannanase [Carbohydrate transport and metabolism]
Probab=89.53 E-value=0.18 Score=50.79 Aligned_cols=108 Identities=20% Similarity=0.157 Sum_probs=78.4
Q ss_pred HHHHHHHHHcCCCEEEecccc-ccccccCCCCCCccchH-HHHHHHHHHHHHHCCCeEEEEcC----CCCCcHhHHHhhC
Q 016924 22 KEDIALVKQVGFDSIRFSISW-SRILPHGNISGGVNQQG-VDFYNNLINELISNGLTPFVTLF----HWDTPQALEDEYG 95 (380)
Q Consensus 22 ~eDi~l~~~lG~~~~R~si~W-~ri~p~~~~~g~~n~~~-~~~y~~~i~~l~~~gi~p~~tL~----h~~~P~~l~~~~g 95 (380)
+.|++.++.+|++..|++|-= .. +-+. .|..|.+. +.+.+.+++.+...+|++++||. |+.--.|...=.|
T Consensus 29 ~~dle~a~~vg~k~lR~fiLDgEd-c~d~--~G~~na~s~~~y~~~fla~a~~l~lkvlitlivg~~hmgg~Nw~Ipwag 105 (587)
T COG3934 29 KADLEPAGFVGVKDLRLFILDGED-CRDK--EGYRNAGSNVWYAAWFLAPAGYLDLKVLITLIVGLKHMGGTNWRIPWAG 105 (587)
T ss_pred hcccccccCccceeEEEEEecCcc-hhhh--hceecccccHHHHHHHhhhcccCcceEEEEEeecccccCcceeEeecCC
Confidence 468899999999999999532 22 2222 37778776 89999999999999999999986 3222111110001
Q ss_pred C------CCChhhHHHHHHHHHHHHHHhCCcC--cEEEecCCCcc
Q 016924 96 G------FLSPKIVKDFGDYADLCFKEFGDRV--KHWITLNEPET 132 (380)
Q Consensus 96 g------w~~~~~~~~f~~ya~~~~~~~~~~v--~~w~t~NEp~~ 132 (380)
| -..+.....|.+|++.+++.|+..+ --|+.-|||-+
T Consensus 106 ~~~pdn~iyD~k~~~~~kkyvedlVk~yk~~ptI~gw~l~Ne~lv 150 (587)
T COG3934 106 EQSPDNVIYDPKFRGPGKKYVEDLVKPYKLDPTIAGWALRNEPLV 150 (587)
T ss_pred CCCccccccchhhcccHHHHHHHHhhhhccChHHHHHHhcCCccc
Confidence 1 2356677889999999999998874 68999999766
No 46
>smart00642 Aamy Alpha-amylase domain.
Probab=87.56 E-value=1.9 Score=37.77 Aligned_cols=66 Identities=11% Similarity=0.174 Sum_probs=46.0
Q ss_pred CCcccCcHHHHHHHHHcCCCEEEecccccccc---------ccCCCCCCcc--chHHHHHHHHHHHHHHCCCeEEEEcC
Q 016924 15 DNFYFRYKEDIALVKQVGFDSIRFSISWSRIL---------PHGNISGGVN--QQGVDFYNNLINELISNGLTPFVTLF 82 (380)
Q Consensus 15 ~~~y~~~~eDi~l~~~lG~~~~R~si~W~ri~---------p~~~~~g~~n--~~~~~~y~~~i~~l~~~gi~p~~tL~ 82 (380)
...+....+-++.+++||++++-++--+.... |... -.++ ....+-++++|++|+++||++++.+-
T Consensus 15 ~G~~~gi~~~l~yl~~lG~~~I~l~Pi~~~~~~~~~~~gY~~~d~--~~i~~~~Gt~~d~~~lv~~~h~~Gi~vilD~V 91 (166)
T smart00642 15 GGDLQGIIEKLDYLKDLGVTAIWLSPIFESPQGYPSYHGYDISDY--KQIDPRFGTMEDFKELVDAAHARGIKVILDVV 91 (166)
T ss_pred CcCHHHHHHHHHHHHHCCCCEEEECcceeCCCCCCCCCCcCcccc--CCCCcccCCHHHHHHHHHHHHHCCCEEEEEEC
Confidence 34466677888899999999998885444332 1110 1111 22346689999999999999999863
No 47
>PF03198 Glyco_hydro_72: Glucanosyltransferase; InterPro: IPR004886 This family is a group of yeast glycolipid proteins anchored to the membrane. It includes Candida albicans (Yeast) pH-regulated protein, which is required for apical growth and plays a role in morphogenesis and Saccharomyces cerevisiae glycolipid anchored surface protein.; PDB: 2W61_A 2W62_A 2W63_A.
Probab=86.77 E-value=4 Score=39.42 Aligned_cols=47 Identities=26% Similarity=0.449 Sum_probs=34.7
Q ss_pred CcHHHHHHHHHcCCCEEEeccccccccccCCCCCCccchHHHHHHHHHHHHHHCCCeEEEEcC
Q 016924 20 RYKEDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLF 82 (380)
Q Consensus 20 ~~~eDi~l~~~lG~~~~R~si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~~tL~ 82 (380)
..+.|+.+||+||+|++|+=- |-|+. | ++.....|.+.||=+++.|.
T Consensus 54 ~C~rDi~~l~~LgiNtIRVY~----vdp~~------n------Hd~CM~~~~~aGIYvi~Dl~ 100 (314)
T PF03198_consen 54 ACKRDIPLLKELGINTIRVYS----VDPSK------N------HDECMSAFADAGIYVILDLN 100 (314)
T ss_dssp HHHHHHHHHHHHT-SEEEES-------TTS--------------HHHHHHHHHTT-EEEEES-
T ss_pred HHHHhHHHHHHcCCCEEEEEE----eCCCC------C------HHHHHHHHHhCCCEEEEecC
Confidence 578899999999999999842 22443 2 68899999999999999995
No 48
>PF12891 Glyco_hydro_44: Glycoside hydrolase family 44; InterPro: IPR024745 This is a family of putative bacterial glycoside hydrolases.; PDB: 3IK2_A 3ZQ9_A 2YJQ_B 2YKK_A 2YIH_A 2EEX_A 2EQD_A 2E0P_A 2E4T_A 2EO7_A ....
Probab=85.88 E-value=2.6 Score=39.13 Aligned_cols=113 Identities=16% Similarity=0.199 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHHCCCeEEEEcCCCC--------------CcHhH--H--------------HhhCC----CCChh-----
Q 016924 61 DFYNNLINELISNGLTPFVTLFHWD--------------TPQAL--E--------------DEYGG----FLSPK----- 101 (380)
Q Consensus 61 ~~y~~~i~~l~~~gi~p~~tL~h~~--------------~P~~l--~--------------~~~gg----w~~~~----- 101 (380)
+.++.+|+.-+++|..+|+||-=.+ .|.|- . .+.+| ..+|+
T Consensus 24 ~~~~~f~~~~~~~ga~~m~T~pm~G~Vakd~~~~~~~~~fp~~~y~~Q~~~d~~~~~~Gng~~~~~~~~~~~~P~~~~~~ 103 (239)
T PF12891_consen 24 DVADTFIDQNLAAGAYSMMTLPMIGYVAKDANSVSESESFPSWRYGPQQWFDPWNPDCGNGVKPDKTALTSNDPDTPDNP 103 (239)
T ss_dssp HHHHHHHHHHHHTT-EEEEEE--SSEEES-BSEGBGGGTSSSTTEEEBS-EETTEEEEE-SEESTSSS--SSSGGSSSSE
T ss_pred HHHHHHHHHhhhcCcceeEeecccceEecCCCCcccccCCChhhcccccccCcCcCCCCccccCCCCCCCCCCCCCCccH
Confidence 6789999999999999999985211 11110 0 00011 11333
Q ss_pred -hHHHHHHHHHHHHHHhCCc-----CcEEEecCCCccccccccccCccCCCCCCCCCCCCCCCCCCChhHHHHHHHHHHH
Q 016924 102 -IVKDFGDYADLCFKEFGDR-----VKHWITLNEPETVGECGYAKGTKAPGRCSNYIGNCPAGNSATEPYVAAHHLILSH 175 (380)
Q Consensus 102 -~~~~f~~ya~~~~~~~~~~-----v~~w~t~NEp~~~~~~gy~~g~~~Pg~~~~~~~~~~~~~~~~~~~~~~h~~l~Ah 175 (380)
.++.| +..+..+||.. |++|..=|||.+...- =..+||-+ ..+.-+.....+.
T Consensus 104 ~y~~ew---V~~l~~~~g~a~~~~gvk~y~lDNEP~LW~~T--H~dVHP~~----------------~t~~El~~r~i~~ 162 (239)
T PF12891_consen 104 VYMDEW---VNYLVNKYGNASTNGGVKYYSLDNEPDLWHST--HRDVHPEP----------------VTYDELRDRSIEY 162 (239)
T ss_dssp EEHHHH---HHHHHHHH--TTSTTS--EEEESS-GGGHHHH--TTTT--S-------------------HHHHHHHHHHH
T ss_pred hHHHHH---HHHHHHHHhccccCCCceEEEecCchHhhccc--ccccCCCC----------------CCHHHHHHHHHHH
Confidence 45555 56666777765 8999999999975311 01123322 2344455666777
Q ss_pred HHHHHHHHHHhhcCCCccE-EEEecC
Q 016924 176 ATAVKLYRQNYQASQNGLI-GITVSS 200 (380)
Q Consensus 176 a~a~~~~~~~~~~~~~~~i-G~~~~~ 200 (380)
|+|+|..- |+++| |.+.-.
T Consensus 163 AkaiK~~D------P~a~v~GP~~wg 182 (239)
T PF12891_consen 163 AKAIKAAD------PDAKVFGPVEWG 182 (239)
T ss_dssp HHHHHHH-------TTSEEEEEEE-S
T ss_pred HHHHHhhC------CCCeEeechhhc
Confidence 77766432 77765 655433
No 49
>PF02638 DUF187: Glycosyl hydrolase like GH101; InterPro: IPR003790 This entry describes proteins of unknown function.
Probab=81.02 E-value=8.5 Score=37.31 Aligned_cols=99 Identities=23% Similarity=0.372 Sum_probs=65.1
Q ss_pred CcHHHHHHHHHcCCCEEEecccc-------ccccccCC-CCCCc-cchHHHHHHHHHHHHHHCCCeEEEEc----C----
Q 016924 20 RYKEDIALVKQVGFDSIRFSISW-------SRILPHGN-ISGGV-NQQGVDFYNNLINELISNGLTPFVTL----F---- 82 (380)
Q Consensus 20 ~~~eDi~l~~~lG~~~~R~si~W-------~ri~p~~~-~~g~~-n~~~~~~y~~~i~~l~~~gi~p~~tL----~---- 82 (380)
..++-++.++++|+|++=+.+.+ |.++|... ..|.. ...|.+.+..+|++++++||++..-+ -
T Consensus 20 ~~~~~l~~l~~~~~N~V~~qVr~~gda~Y~S~~~p~s~~~~g~~~~~pg~DpL~~~I~eaHkrGlevHAW~~~~~~~~~~ 99 (311)
T PF02638_consen 20 QIDEMLDDLKSAGFNAVFVQVRPRGDALYPSDIEPWSGYLTGKQGKDPGFDPLEFMIEEAHKRGLEVHAWFRVGFNAPDV 99 (311)
T ss_pred HHHHHHHHHHHcCCCEEEEEEEeCcEEEecccccccccccCCCCCCCCCccHHHHHHHHHHHcCCEEEEEEEeecCCCch
Confidence 35667899999999988776654 34444210 01111 11256779999999999999998654 1
Q ss_pred -C--CCCcHhHHHh-------h----CC--CC---ChhhHHHHHHHHHHHHHHhC
Q 016924 83 -H--WDTPQALEDE-------Y----GG--FL---SPKIVKDFGDYADLCFKEFG 118 (380)
Q Consensus 83 -h--~~~P~~l~~~-------~----gg--w~---~~~~~~~f~~ya~~~~~~~~ 118 (380)
| -..|.|+..+ + ++ |+ +|++.+...+-++.|+++|.
T Consensus 100 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~lnP~~PeVr~~i~~~v~Eiv~~Yd 154 (311)
T PF02638_consen 100 SHILKKHPEWFAVNHPGWVRTYEDANGGYYWLNPGHPEVRDYIIDIVKEIVKNYD 154 (311)
T ss_pred hhhhhcCchhheecCCCceeecccCCCCceEECCCCHHHHHHHHHHHHHHHhcCC
Confidence 1 1246665421 1 22 44 57788999999999999994
No 50
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=79.82 E-value=7.6 Score=32.72 Aligned_cols=58 Identities=10% Similarity=0.017 Sum_probs=39.2
Q ss_pred HHHHHHHcCCCEEEeccc--cccc-cccCCCCCCccchHHHHHHHHHHHHHHCCCeEEEEcC
Q 016924 24 DIALVKQVGFDSIRFSIS--WSRI-LPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLF 82 (380)
Q Consensus 24 Di~l~~~lG~~~~R~si~--W~ri-~p~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~~tL~ 82 (380)
=++.||++|+|++-+... +--. .|+..-.-.+..+ -+.+.++|++|+++||++++=+.
T Consensus 5 ~~~~lk~~~v~si~i~a~~h~g~ayYPt~~~~~hp~L~-~Dllge~v~a~h~~Girv~ay~~ 65 (132)
T PF14871_consen 5 FVDTLKEAHVNSITIFAKCHGGYAYYPTKVGPRHPGLK-RDLLGEQVEACHERGIRVPAYFD 65 (132)
T ss_pred HHHHHHHhCCCEEEEEcccccEEEEccCCCCcCCCCCC-cCHHHHHHHHHHHCCCEEEEEEe
Confidence 368899999999999443 2211 2443100122233 47899999999999999998664
No 51
>PLN02361 alpha-amylase
Probab=78.30 E-value=5.1 Score=40.31 Aligned_cols=66 Identities=11% Similarity=0.262 Sum_probs=45.6
Q ss_pred CcccCcHHHHHHHHHcCCCEEEeccccccccccCCC---CCCcc--chHHHHHHHHHHHHHHCCCeEEEEc
Q 016924 16 NFYFRYKEDIALVKQVGFDSIRFSISWSRILPHGNI---SGGVN--QQGVDFYNNLINELISNGLTPFVTL 81 (380)
Q Consensus 16 ~~y~~~~eDi~l~~~lG~~~~R~si~W~ri~p~~~~---~g~~n--~~~~~~y~~~i~~l~~~gi~p~~tL 81 (380)
.+|....+-++-+++||++++=++=.....-+.|-. --.+| ....+=++++|++|.++||++++.+
T Consensus 26 ~~w~~i~~kl~~l~~lG~t~iwl~P~~~~~~~~GY~~~d~y~~~~~~Gt~~el~~li~~~h~~gi~vi~D~ 96 (401)
T PLN02361 26 DWWRNLEGKVPDLAKSGFTSAWLPPPSQSLAPEGYLPQNLYSLNSAYGSEHLLKSLLRKMKQYNVRAMADI 96 (401)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEeCCCCcCCCCCCCCcccccccCcccCCHHHHHHHHHHHHHcCCEEEEEE
Confidence 367788899999999999999887544333232200 00111 1123558999999999999999974
No 52
>KOG2233 consensus Alpha-N-acetylglucosaminidase [Intracellular trafficking, secretion, and vesicular transport]
Probab=77.32 E-value=8.4 Score=39.26 Aligned_cols=113 Identities=19% Similarity=0.345 Sum_probs=70.6
Q ss_pred ccCcHHHHHHHHHcCCCEEEec----cccccccccCCC--------------------------CCCccc----hHHHHH
Q 016924 18 YFRYKEDIALVKQVGFDSIRFS----ISWSRILPHGNI--------------------------SGGVNQ----QGVDFY 63 (380)
Q Consensus 18 y~~~~eDi~l~~~lG~~~~R~s----i~W~ri~p~~~~--------------------------~g~~n~----~~~~~y 63 (380)
|.+|+..|+.|+-.|+|..=.. +-|-+|+-.-.+ .|.... .-+--=
T Consensus 77 w~qWeR~iDWmALnGinl~la~~gQEaIWqkVf~~lgl~~eeldeyftgpAflAW~RMGNl~awgGpLs~aw~~~ql~Lq 156 (666)
T KOG2233|consen 77 WEQWEREIDWMALNGINLVLAPLGQEAIWQKVFMGLGLQREELDEYFTGPAFLAWHRMGNLHAWGGPLSPAWMLNQLLLQ 156 (666)
T ss_pred hHHHHhHhhHHHHcCcceeeccchhHHHHHHHHHHcCCCHHHHHHhcccHHHHHHHHhcCccccCCCCCHHHHHHHHHHH
Confidence 6789999999999999966443 345555432100 022221 112234
Q ss_pred HHHHHHHHHCCCeEEEEcCCCCCcHhHHHhh--------CCCC------------C---hhhHHHHHHHHHHHHHHhCCc
Q 016924 64 NNLINELISNGLTPFVTLFHWDTPQALEDEY--------GGFL------------S---PKIVKDFGDYADLCFKEFGDR 120 (380)
Q Consensus 64 ~~~i~~l~~~gi~p~~tL~h~~~P~~l~~~~--------ggw~------------~---~~~~~~f~~ya~~~~~~~~~~ 120 (380)
+++|+.+++-||+|++--+---.|..|..-| +-|. + |-+++-=..|-+...+.||.-
T Consensus 157 krIidrm~~lGmTpvLPaFaG~VP~al~rlfPesnf~rl~rWn~f~s~~~C~l~v~P~dplF~eIgs~Flr~~~kefG~~ 236 (666)
T KOG2233|consen 157 KRIIDRMLELGMTPVLPAFAGHVPDALERLFPESNFTRLPRWNNFTSRYSCMLLVSPFDPLFQEIGSTFLRHQIKEFGGV 236 (666)
T ss_pred HHHHHHHHHcCCCccchhhccccHHHHHHhCchhceeeccccCCCCcceeeeEEccCCcchHHHHHHHHHHHHHHHhCCc
Confidence 6899999999999999877555788776533 2232 2 223444445666777889973
Q ss_pred CcEE--EecCCC
Q 016924 121 VKHW--ITLNEP 130 (380)
Q Consensus 121 v~~w--~t~NEp 130 (380)
-..+ -||||.
T Consensus 237 tniy~~DpFNE~ 248 (666)
T KOG2233|consen 237 TNIYSADPFNEI 248 (666)
T ss_pred ccccccCccccc
Confidence 3333 489984
No 53
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=76.41 E-value=6.8 Score=36.72 Aligned_cols=59 Identities=14% Similarity=0.266 Sum_probs=40.3
Q ss_pred HHHHHHHHHcCCCEEEecccccccc-ccCCCCCC-------ccchHHHHHHHHHHHHHHCCCeEEEEcC
Q 016924 22 KEDIALVKQVGFDSIRFSISWSRIL-PHGNISGG-------VNQQGVDFYNNLINELISNGLTPFVTLF 82 (380)
Q Consensus 22 ~eDi~l~~~lG~~~~R~si~W~ri~-p~~~~~g~-------~n~~~~~~y~~~i~~l~~~gi~p~~tL~ 82 (380)
.+-++.+|+||++++-++=-+..-. ..+ -.. ......+=++++|++|.++||++|+++-
T Consensus 7 ~~kLdyl~~lGv~~I~l~Pi~~~~~~~~g--Y~~~d~~~vd~~~Gt~~d~~~Lv~~~h~~gi~VilD~V 73 (316)
T PF00128_consen 7 IDKLDYLKDLGVNAIWLSPIFESPNGYHG--YDPSDYYAVDPRFGTMEDFKELVDAAHKRGIKVILDVV 73 (316)
T ss_dssp HHTHHHHHHHTESEEEESS-EESSSSTTT--TSESEEEEESTTTBHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred HHhhHHHHHcCCCceeccccccccccccc--ccceeeeccccccchhhhhhhhhhccccccceEEEeee
Confidence 4568899999999999985444211 011 001 1123456689999999999999999863
No 54
>cd06543 GH18_PF-ChiA-like PF-ChiA is an uncharacterized chitinase found in the hyperthermophilic archaeon Pyrococcus furiosus with a glycosyl hydrolase family 18 (GH18) catalytic domain as well as a cellulose-binding domain. Members of this domain family are found not only in archaea but also in eukaryotes and prokaryotes. PF-ChiA exhibits hydrolytic activity toward both colloidal and crystalline (beta/alpha) chitins at high temperature.
Probab=75.41 E-value=16 Score=35.17 Aligned_cols=85 Identities=11% Similarity=0.048 Sum_probs=51.5
Q ss_pred HHHHHcCCCEEEeccc--cccccccCCCCCCccchHHHHHHHHHHHHHHCCCeEEEEcCCCCCcHhHHHhhCCCCChhhH
Q 016924 26 ALVKQVGFDSIRFSIS--WSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFHWDTPQALEDEYGGFLSPKIV 103 (380)
Q Consensus 26 ~l~~~lG~~~~R~si~--W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~~tL~h~~~P~~l~~~~ggw~~~~~~ 103 (380)
+.+++.|++++-+++. -..-.|.- .|............-|..|+++|++++|.+--+.-... -.+...+
T Consensus 19 ~~~~~~g~~~v~lAFi~~~~~~~~~w--~g~~~~~~~~~~~~~i~~lk~~G~kViiS~GG~~g~~~-------~~~~~~~ 89 (294)
T cd06543 19 TYAAATGVKAFTLAFIVASGGCKPAW--GGSYPLDQGGWIKSDIAALRAAGGDVIVSFGGASGTPL-------ATSCTSA 89 (294)
T ss_pred HHHHHcCCCEEEEEEEEcCCCCcccC--CCCCCcccchhHHHHHHHHHHcCCeEEEEecCCCCCcc-------ccCcccH
Confidence 5778899999988753 12222221 11111011244577899999999999999833321100 0134567
Q ss_pred HHHHHHHHHHHHHhCC
Q 016924 104 KDFGDYADLCFKEFGD 119 (380)
Q Consensus 104 ~~f~~ya~~~~~~~~~ 119 (380)
+.|++....+.++|+=
T Consensus 90 ~~~~~a~~~~i~~y~~ 105 (294)
T cd06543 90 DQLAAAYQKVIDAYGL 105 (294)
T ss_pred HHHHHHHHHHHHHhCC
Confidence 8888888888888863
No 55
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=74.60 E-value=9.3 Score=36.46 Aligned_cols=84 Identities=12% Similarity=0.066 Sum_probs=61.9
Q ss_pred CcHHHHHHHHHcCCCEEEeccccccccccCCCCCCccchHHHHHHHHHHHHHHCCCeEEEEcCCCCCcHhHHHhhCCCCC
Q 016924 20 RYKEDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFHWDTPQALEDEYGGFLS 99 (380)
Q Consensus 20 ~~~eDi~l~~~lG~~~~R~si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~~tL~h~~~P~~l~~~~ggw~~ 99 (380)
+-+.|++++++.|++.++++++=|...-... -+.--.+.++...+++..+++.|+++.+++-+|+.|.
T Consensus 75 ~~~~~~~~A~~~g~~~i~i~~~~S~~h~~~~-~~~t~~e~l~~~~~~i~~a~~~G~~v~~~~~d~~~~~----------- 142 (280)
T cd07945 75 DGDKSVDWIKSAGAKVLNLLTKGSLKHCTEQ-LRKTPEEHFADIREVIEYAIKNGIEVNIYLEDWSNGM----------- 142 (280)
T ss_pred CcHHHHHHHHHCCCCEEEEEEeCCHHHHHHH-HCcCHHHHHHHHHHHHHHHHhCCCEEEEEEEeCCCCC-----------
Confidence 4467999999999999999986554443221 1333467889999999999999999999998876653
Q ss_pred hhhHHHHHHHHHHHHH
Q 016924 100 PKIVKDFGDYADLCFK 115 (380)
Q Consensus 100 ~~~~~~f~~ya~~~~~ 115 (380)
+...+.+.++++.+.+
T Consensus 143 r~~~~~~~~~~~~~~~ 158 (280)
T cd07945 143 RDSPDYVFQLVDFLSD 158 (280)
T ss_pred cCCHHHHHHHHHHHHH
Confidence 1224667777777654
No 56
>PLN00196 alpha-amylase; Provisional
Probab=73.58 E-value=6.4 Score=39.98 Aligned_cols=65 Identities=9% Similarity=0.169 Sum_probs=44.1
Q ss_pred cccCcHHHHHHHHHcCCCEEEeccccccccccCCC---CCCcc---chHHHHHHHHHHHHHHCCCeEEEEc
Q 016924 17 FYFRYKEDIALVKQVGFDSIRFSISWSRILPHGNI---SGGVN---QQGVDFYNNLINELISNGLTPFVTL 81 (380)
Q Consensus 17 ~y~~~~eDi~l~~~lG~~~~R~si~W~ri~p~~~~---~g~~n---~~~~~~y~~~i~~l~~~gi~p~~tL 81 (380)
+|....+.+.-+++||++++=++=.....-+.|-- --.+| ...-+=++++|+++.++||++|+..
T Consensus 42 ~~~~i~~kldyL~~LGvtaIWL~P~~~s~s~hGY~~~D~y~ld~~~fGt~~elk~Lv~~aH~~GIkVilDv 112 (428)
T PLN00196 42 WYNFLMGKVDDIAAAGITHVWLPPPSHSVSEQGYMPGRLYDLDASKYGNEAQLKSLIEAFHGKGVQVIADI 112 (428)
T ss_pred CHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCcccCCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 45556788999999999999988544433222200 01122 1223458999999999999999974
No 57
>PRK09936 hypothetical protein; Provisional
Probab=72.60 E-value=31 Score=33.07 Aligned_cols=61 Identities=21% Similarity=0.401 Sum_probs=45.2
Q ss_pred HHHHHHHHHcCCCEEEeccccccccccCCCCCCccchHHHHHHHHHHHHHHCCCeEEEEcCCCCCcHhHHH
Q 016924 22 KEDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFHWDTPQALED 92 (380)
Q Consensus 22 ~eDi~l~~~lG~~~~R~si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~~tL~h~~~P~~l~~ 92 (380)
++=+..++.+|+++. -+.|++.--+.+ |.-+ .+..+.++...+.||+++|.|+ +| |.|.+.
T Consensus 41 q~~~~~~~~~G~~tL--ivQWt~yG~~~f--g~~~----g~La~~l~~A~~~Gl~v~vGL~-~D-p~y~q~ 101 (296)
T PRK09936 41 QGLWSQLRLQGFDTL--VVQWTRYGDADF--GGQR----GWLAKRLAAAQQAGLKLVVGLY-AD-PEFFMH 101 (296)
T ss_pred HHHHHHHHHcCCcEE--EEEeeeccCCCc--ccch----HHHHHHHHHHHHcCCEEEEccc-CC-hHHHHH
Confidence 444788999999985 568988832221 2222 5689999999999999999997 66 666654
No 58
>PRK05402 glycogen branching enzyme; Provisional
Probab=71.18 E-value=23 Score=38.54 Aligned_cols=100 Identities=14% Similarity=0.220 Sum_probs=57.5
Q ss_pred HHHH-HHHHHcCCCEEEeccc--------cccccccCCCCCCccchHHHHHHHHHHHHHHCCCeEEEEc--CCCCC----
Q 016924 22 KEDI-ALVKQVGFDSIRFSIS--------WSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTL--FHWDT---- 86 (380)
Q Consensus 22 ~eDi-~l~~~lG~~~~R~si~--------W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~~tL--~h~~~---- 86 (380)
.+.+ +-+|+||++++=+.=- |- -.|.....=.......+=++++|++|.++||++|+.+ .|+..
T Consensus 268 ~~~l~~ylk~LGv~~i~L~Pi~e~~~~~~~G-Y~~~~y~ai~~~~Gt~~dfk~lV~~~H~~Gi~VilD~V~NH~~~~~~~ 346 (726)
T PRK05402 268 ADQLIPYVKEMGFTHVELLPIAEHPFDGSWG-YQPTGYYAPTSRFGTPDDFRYFVDACHQAGIGVILDWVPAHFPKDAHG 346 (726)
T ss_pred HHHHHHHHHHcCCCEEEECCcccCCCCCCCC-CCcccCCCcCcccCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCccc
Confidence 3453 7789999999877632 21 1111100000111223458999999999999999984 45521
Q ss_pred -------cHhHHH-----hhCCC-------CChhhHHHHHHHHHHHHHHhCCcCcEE
Q 016924 87 -------PQALED-----EYGGF-------LSPKIVKDFGDYADLCFKEFGDRVKHW 124 (380)
Q Consensus 87 -------P~~l~~-----~~ggw-------~~~~~~~~f~~ya~~~~~~~~~~v~~w 124 (380)
|.+... .+..| .++++.+.+.+-++.-+++|+ |+-|
T Consensus 347 ~~~~~~~~~y~~~~~~~~~~~~w~~~~~n~~~~~v~~~l~~~~~~W~~e~~--iDG~ 401 (726)
T PRK05402 347 LARFDGTALYEHADPREGEHPDWGTLIFNYGRNEVRNFLVANALYWLEEFH--IDGL 401 (726)
T ss_pred hhccCCCcceeccCCcCCccCCCCCccccCCCHHHHHHHHHHHHHHHHHhC--CcEE
Confidence 111110 01123 367777888887777777774 5555
No 59
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=70.86 E-value=14 Score=36.34 Aligned_cols=86 Identities=9% Similarity=-0.009 Sum_probs=62.9
Q ss_pred CcHHHHHHHHHcCCCEEEeccccccccccCCCCCCccchHHHHHHHHHHHHHHCCCeEEEEcCC-CCCcHhHHHhhCCCC
Q 016924 20 RYKEDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFH-WDTPQALEDEYGGFL 98 (380)
Q Consensus 20 ~~~eDi~l~~~lG~~~~R~si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~~tL~h-~~~P~~l~~~~ggw~ 98 (380)
.-.+|++.+.+.|++.+.+.++=|...-... -+.--++.++.+.++|+.++++|+++.+++.. |..|. .|-.
T Consensus 122 ~n~~die~A~~~g~~~v~i~~s~Sd~h~~~n-~~~t~~e~l~~~~~~v~~Ak~~Gl~v~~~is~~fg~p~------~~r~ 194 (347)
T PLN02746 122 PNLKGFEAAIAAGAKEVAVFASASESFSKSN-INCSIEESLVRYREVALAAKKHSIPVRGYVSCVVGCPI------EGPV 194 (347)
T ss_pred CCHHHHHHHHHcCcCEEEEEEecCHHHHHHH-hCCCHHHHHHHHHHHHHHHHHcCCeEEEEEEeeecCCc------cCCC
Confidence 3689999999999999999987666553321 13445678999999999999999999877753 55552 3322
Q ss_pred ChhhHHHHHHHHHHHHH
Q 016924 99 SPKIVKDFGDYADLCFK 115 (380)
Q Consensus 99 ~~~~~~~f~~ya~~~~~ 115 (380)
.++.+.++++.+.+
T Consensus 195 ---~~~~l~~~~~~~~~ 208 (347)
T PLN02746 195 ---PPSKVAYVAKELYD 208 (347)
T ss_pred ---CHHHHHHHHHHHHH
Confidence 35667777777654
No 60
>PRK12313 glycogen branching enzyme; Provisional
Probab=68.29 E-value=28 Score=37.20 Aligned_cols=97 Identities=18% Similarity=0.306 Sum_probs=59.2
Q ss_pred ccCcHHH-HHHHHHcCCCEEEecc--------ccc-------cccccCCCCCCccchHHHHHHHHHHHHHHCCCeEEEEc
Q 016924 18 YFRYKED-IALVKQVGFDSIRFSI--------SWS-------RILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTL 81 (380)
Q Consensus 18 y~~~~eD-i~l~~~lG~~~~R~si--------~W~-------ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~~tL 81 (380)
|.-..+. ++-+|+||++++=+.= +|. .|.|.- |. .+=++++|++|.++||++|+.+
T Consensus 169 ~~~~~~~ll~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~y~~i~~~~---Gt-----~~d~k~lv~~~H~~Gi~VilD~ 240 (633)
T PRK12313 169 YRELADELIPYVKEMGYTHVEFMPLMEHPLDGSWGYQLTGYFAPTSRY---GT-----PEDFMYLVDALHQNGIGVILDW 240 (633)
T ss_pred HHHHHHHHHHHHHHcCCCEEEeCchhcCCCCCCCCCCCcCcCcCCCCC---CC-----HHHHHHHHHHHHHCCCEEEEEE
Confidence 3334556 4899999999997652 221 111221 33 3458999999999999999984
Q ss_pred --CCCCCcH----hHH--------H---h-hCCC-------CChhhHHHHHHHHHHHHHHhCCcCcEE
Q 016924 82 --FHWDTPQ----ALE--------D---E-YGGF-------LSPKIVKDFGDYADLCFKEFGDRVKHW 124 (380)
Q Consensus 82 --~h~~~P~----~l~--------~---~-~ggw-------~~~~~~~~f~~ya~~~~~~~~~~v~~w 124 (380)
.|..-.. ++. + . +.+| .++++.+.+.+-++.-+++|| |+.|
T Consensus 241 V~nH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~n~~~~~vr~~l~~~~~~W~~~~~--iDG~ 306 (633)
T PRK12313 241 VPGHFPKDDDGLAYFDGTPLYEYQDPRRAENPDWGALNFDLGKNEVRSFLISSALFWLDEYH--LDGL 306 (633)
T ss_pred CCCCCCCCcccccccCCCcceeecCCCCCcCCCCCCcccCCCCHHHHHHHHHHHHHHHHHhC--CcEE
Confidence 4543110 110 0 0 1123 367777888887777777775 4444
No 61
>PRK09058 coproporphyrinogen III oxidase; Provisional
Probab=68.21 E-value=17 Score=37.11 Aligned_cols=106 Identities=12% Similarity=0.101 Sum_probs=64.2
Q ss_pred cHHHHHHHHHcCCCEEEeccc-cc-cccccCCCCCCccchHHHHHHHHHHHHHHCC-CeEEEEcCCCCCcHhHHHhhCCC
Q 016924 21 YKEDIALVKQVGFDSIRFSIS-WS-RILPHGNISGGVNQQGVDFYNNLINELISNG-LTPFVTLFHWDTPQALEDEYGGF 97 (380)
Q Consensus 21 ~~eDi~l~~~lG~~~~R~si~-W~-ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~g-i~p~~tL~h~~~P~~l~~~~ggw 97 (380)
-+|.+++|+++|+|.+.+++. -+ .+.-.- |+.. ..+-..+.|+.+++.| +.+.++|- +++|.
T Consensus 162 t~e~l~~l~~aGvnRiSiGVQSf~d~vLk~l---gR~~--~~~~~~~~i~~l~~~g~~~v~~DlI-~GlPg--------- 226 (449)
T PRK09058 162 DDEKADAALDAGANRFSIGVQSFNTQVRRRA---GRKD--DREEVLARLEELVARDRAAVVCDLI-FGLPG--------- 226 (449)
T ss_pred CHHHHHHHHHcCCCEEEecCCcCCHHHHHHh---CCCC--CHHHHHHHHHHHHhCCCCcEEEEEE-eeCCC---------
Confidence 468899999999998888884 21 222111 2221 1244667889999999 66777764 55652
Q ss_pred CChhhHHHHHHHHHHHHHHhCCcCcEEEecCCCccccccccccCccC
Q 016924 98 LSPKIVKDFGDYADLCFKEFGDRVKHWITLNEPETVGECGYAKGTKA 144 (380)
Q Consensus 98 ~~~~~~~~f~~ya~~~~~~~~~~v~~w~t~NEp~~~~~~gy~~g~~~ 144 (380)
++.+.|.+=.+.+.+-=-++|..+...-+|.......+..|..+
T Consensus 227 ---qT~e~~~~~l~~~~~l~~~~is~y~L~~~pgT~l~~~~~~g~l~ 270 (449)
T PRK09058 227 ---QTPEIWQQDLAIVRDLGLDGVDLYALNLLPGTPLAKAVEKGKLP 270 (449)
T ss_pred ---CCHHHHHHHHHHHHhcCCCEEEEeccccCCCCHHHHHHHcCCCC
Confidence 13344555455554433467888888788876433323334443
No 62
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=67.48 E-value=1.3e+02 Score=29.36 Aligned_cols=32 Identities=19% Similarity=0.233 Sum_probs=29.2
Q ss_pred CCccchHHHHHHHHHHHHHHCCCeEEEEcCCC
Q 016924 53 GGVNQQGVDFYNNLINELISNGLTPFVTLFHW 84 (380)
Q Consensus 53 g~~n~~~~~~y~~~i~~l~~~gi~p~~tL~h~ 84 (380)
+-++.+-+..++++.+.++++|-+.++=|+|-
T Consensus 69 ~~~~d~~~~~~~~l~~~vh~~G~~~~~QL~H~ 100 (336)
T cd02932 69 GLWNDEQIEALKRIVDFIHSQGAKIGIQLAHA 100 (336)
T ss_pred eecCHHHHHHHHHHHHHHHhcCCcEEEEccCC
Confidence 55678889999999999999999999999994
No 63
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=67.19 E-value=18 Score=33.60 Aligned_cols=83 Identities=17% Similarity=0.029 Sum_probs=55.8
Q ss_pred HHHHHHHHHcCCCEEEeccccccccccCCCCCCccchHHHHHHHHHHHHHHCCCeEEEEcCCCCCcHhHHHhhCCCCChh
Q 016924 22 KEDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFHWDTPQALEDEYGGFLSPK 101 (380)
Q Consensus 22 ~eDi~l~~~lG~~~~R~si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~~tL~h~~~P~~l~~~~ggw~~~~ 101 (380)
+++++++++.|++.+|++++-+.+.-... .+.=....++...+.+..+++.|+++.+.+....-| ..
T Consensus 77 ~~~i~~a~~~g~~~i~i~~~~s~~~~~~~-~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~~------------~~ 143 (265)
T cd03174 77 EKGIERALEAGVDEVRIFDSASETHSRKN-LNKSREEDLENAEEAIEAAKEAGLEVEGSLEDAFGC------------KT 143 (265)
T ss_pred hhhHHHHHhCCcCEEEEEEecCHHHHHHH-hCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeecCC------------CC
Confidence 89999999999999999998664221110 011122356778899999999999999998543322 13
Q ss_pred hHHHHHHHHHHHHHHhC
Q 016924 102 IVKDFGDYADLCFKEFG 118 (380)
Q Consensus 102 ~~~~f~~ya~~~~~~~~ 118 (380)
..+.+.++++.+. .+|
T Consensus 144 ~~~~l~~~~~~~~-~~g 159 (265)
T cd03174 144 DPEYVLEVAKALE-EAG 159 (265)
T ss_pred CHHHHHHHHHHHH-HcC
Confidence 3455666666654 344
No 64
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=66.81 E-value=17 Score=35.97 Aligned_cols=62 Identities=19% Similarity=0.074 Sum_probs=48.2
Q ss_pred CcHHHHHHHHHcCCCEEEeccccccccccCCCCCCccchHHHHHHHHHHHHHHCCCeEEEEcC
Q 016924 20 RYKEDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLF 82 (380)
Q Consensus 20 ~~~eDi~l~~~lG~~~~R~si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~~tL~ 82 (380)
-.++|++.+.+.|++.+|++++-|.+.-... -+.-..+.++...+.+..+++.|+++.+++-
T Consensus 72 ~~~~di~~a~~~g~~~i~i~~~~Sd~~~~~~-~~~~~~~~~~~~~~~i~~ak~~G~~v~~~~e 133 (363)
T TIGR02090 72 ALKKDIDKAIDCGVDSIHTFIATSPIHLKYK-LKKSRDEVLEKAVEAVEYAKEHGLIVEFSAE 133 (363)
T ss_pred cCHHHHHHHHHcCcCEEEEEEcCCHHHHHHH-hCCCHHHHHHHHHHHHHHHHHcCCEEEEEEe
Confidence 3589999999999999999988776643211 0323345678899999999999999988874
No 65
>TIGR01210 conserved hypothetical protein TIGR01210. This family of exclusively archaeal proteins has no characterized close homologs. Several rounds of PSI-BLAST with a stringent cutoff of 1e-8 shows apparent similarity of the central region of this family to the central regions of the oxygen-independent coproporphyrinogen III dehydrogenase HemN and to other enzymes.
Probab=66.66 E-value=29 Score=33.67 Aligned_cols=109 Identities=16% Similarity=0.192 Sum_probs=67.5
Q ss_pred HHHHHHHHHcCCC-EEEeccc-c-ccccc-cCCCCCCccchHHHHHHHHHHHHHHCCCeEEEEcCCCCCcHhHHHhhCCC
Q 016924 22 KEDIALVKQVGFD-SIRFSIS-W-SRILP-HGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFHWDTPQALEDEYGGF 97 (380)
Q Consensus 22 ~eDi~l~~~lG~~-~~R~si~-W-~ri~p-~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~~tL~h~~~P~~l~~~~ggw 97 (380)
+|.+++|+++|++ .+-++++ - .++.- .- .-..+ .+-+.+.++.++++||.+.+.+. +.+|. .
T Consensus 117 ~e~L~~l~~aG~~~~v~iG~ES~~d~~L~~~i--nKg~t---~~~~~~ai~~~~~~Gi~v~~~~i-~G~P~--------~ 182 (313)
T TIGR01210 117 EEKLEELRKIGVNVEVAVGLETANDRIREKSI--NKGST---FEDFIRAAELARKYGAGVKAYLL-FKPPF--------L 182 (313)
T ss_pred HHHHHHHHHcCCCEEEEEecCcCCHHHHHHhh--CCCCC---HHHHHHHHHHHHHcCCcEEEEEE-ecCCC--------C
Confidence 7889999999998 4666663 1 12221 10 01122 35678999999999999777654 34441 2
Q ss_pred CChhhHHHHHHHHHHHHHHhCCcCcEEEecCCCccccccccccCccCC
Q 016924 98 LSPKIVKDFGDYADLCFKEFGDRVKHWITLNEPETVGECGYAKGTKAP 145 (380)
Q Consensus 98 ~~~~~~~~f~~ya~~~~~~~~~~v~~w~t~NEp~~~~~~gy~~g~~~P 145 (380)
...++++.+.+.++.+.. ++++|....+.=+|+.....-|..|.|.|
T Consensus 183 se~ea~ed~~~ti~~~~~-l~~~vs~~~l~v~~gT~l~~~~~~G~~~p 229 (313)
T TIGR01210 183 SEKEAIADMISSIRKCIP-VTDTVSINPTNVQKGTLVEFLWNRGLYRP 229 (313)
T ss_pred ChhhhHHHHHHHHHHHHh-cCCcEEEECCEEeCCCHHHHHHHcCCCCC
Confidence 223577778777777754 45777777665566653333355566654
No 66
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=66.62 E-value=8.9 Score=35.96 Aligned_cols=60 Identities=25% Similarity=0.218 Sum_probs=47.2
Q ss_pred cHHHHHHHHHcCCCEEEeccccccccccCCCCCCccchHHHHHHHHHHHHHHCCCeEEEEc
Q 016924 21 YKEDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTL 81 (380)
Q Consensus 21 ~~eDi~l~~~lG~~~~R~si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~~tL 81 (380)
-.+|++...+.|++.+|++++.|.+.-... -+.-.++.++-..++++.+++.|+++.+++
T Consensus 71 ~~~~v~~a~~~g~~~i~i~~~~s~~~~~~~-~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~ 130 (259)
T cd07939 71 VKEDIEAALRCGVTAVHISIPVSDIHLAHK-LGKDRAWVLDQLRRLVGRAKDRGLFVSVGA 130 (259)
T ss_pred CHHHHHHHHhCCcCEEEEEEecCHHHHHHH-hCCCHHHHHHHHHHHHHHHHHCCCeEEEee
Confidence 478999999999999999998877643211 133345778889999999999999988665
No 67
>cd06593 GH31_xylosidase_YicI YicI alpha-xylosidase is a glycosyl hydrolase family 31 (GH31) enzyme that catalyzes the release of an alpha-xylosyl residue from the non-reducing end of alpha-xyloside substrates such as alpha-xylosyl fluoride and isoprimeverose. YicI forms a homohexamer (a trimer of dimers). All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The YicI family corresponds to subgroup 4 in the Ernst et al classification of GH31 enzymes.
Probab=65.79 E-value=46 Score=31.95 Aligned_cols=106 Identities=15% Similarity=0.200 Sum_probs=67.2
Q ss_pred cHHHHHHHHHcC--CCEEEeccccccccccCCCCCCccchHHHHHHHHHHHHHHCCCeEEEEcCCC---CCcHhHHHh--
Q 016924 21 YKEDIALVKQVG--FDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFHW---DTPQALEDE-- 93 (380)
Q Consensus 21 ~~eDi~l~~~lG--~~~~R~si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~~tL~h~---~~P~~l~~~-- 93 (380)
..+-++.+++.| ++++=+.+.|.+-.-.+ +-.+|.+.+--...+|+.|+++|+++++.+.-+ +.|..-+.+
T Consensus 26 v~~~~~~~~~~~iP~d~~~lD~~w~~~~~~~--~f~~d~~~FPd~~~~i~~l~~~G~~~~~~~~P~i~~~~~~~~e~~~~ 103 (308)
T cd06593 26 VNEFADGMRERNLPCDVIHLDCFWMKEFQWC--DFEFDPDRFPDPEGMLSRLKEKGFKVCLWINPYIAQKSPLFKEAAEK 103 (308)
T ss_pred HHHHHHHHHHcCCCeeEEEEecccccCCcce--eeEECcccCCCHHHHHHHHHHCCCeEEEEecCCCCCCchhHHHHHHC
Confidence 455678889999 55666777887432211 134565555557899999999999998876532 223221110
Q ss_pred -----------h--------CC---CCChhhHHHHHHHHHHHHHHhCCcCc-EEEecCCCc
Q 016924 94 -----------Y--------GG---FLSPKIVKDFGDYADLCFKEFGDRVK-HWITLNEPE 131 (380)
Q Consensus 94 -----------~--------gg---w~~~~~~~~f~~ya~~~~~~~~~~v~-~w~t~NEp~ 131 (380)
+ ++ +.||+..+.|.+..+.+.+ .| |+ +|.=+||+.
T Consensus 104 g~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~-~G--id~~~~D~~e~~ 161 (308)
T cd06593 104 GYLVKKPDGSVWQWDLWQPGMGIIDFTNPDACKWYKDKLKPLLD-MG--VDCFKTDFGERI 161 (308)
T ss_pred CeEEECCCCCeeeecccCCCcccccCCCHHHHHHHHHHHHHHHH-hC--CcEEecCCCCCC
Confidence 0 12 4688888888877776554 44 44 556788873
No 68
>PLN02784 alpha-amylase
Probab=65.25 E-value=15 Score=40.35 Aligned_cols=64 Identities=17% Similarity=0.309 Sum_probs=46.0
Q ss_pred CcccCcHHHHHHHHHcCCCEEEeccccccccccCCCCCC-----cc--chHHHHHHHHHHHHHHCCCeEEEEc
Q 016924 16 NFYFRYKEDIALVKQVGFDSIRFSISWSRILPHGNISGG-----VN--QQGVDFYNNLINELISNGLTPFVTL 81 (380)
Q Consensus 16 ~~y~~~~eDi~l~~~lG~~~~R~si~W~ri~p~~~~~g~-----~n--~~~~~~y~~~i~~l~~~gi~p~~tL 81 (380)
.+|....+.++.+++||++++=++=......+.|- .. +| ....+-++.+|+.|.++||++++.+
T Consensus 518 ~w~~~I~ekldyL~~LG~taIWLpP~~~s~s~~GY--~p~D~y~lds~yGT~~ELk~LI~a~H~~GIkVIlDi 588 (894)
T PLN02784 518 RWYMELGEKAAELSSLGFTVVWLPPPTESVSPEGY--MPKDLYNLNSRYGTIDELKDLVKSFHEVGIKVLGDA 588 (894)
T ss_pred chHHHHHHHHHHHHHhCCCEEEeCCCCCCCCCCCc--CcccccccCcCcCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 46777889999999999999988754333333331 11 11 1224568999999999999999974
No 69
>TIGR02403 trehalose_treC alpha,alpha-phosphotrehalase. Trehalose is a glucose disaccharide that serves in many biological systems as a compatible solute for protection against hyperosmotic and thermal stress. This family describes trehalose-6-phosphate hydrolase, product of the treC (or treA) gene, which is often found together with a trehalose uptake transporter and a trehalose operon repressor.
Probab=65.00 E-value=11 Score=39.46 Aligned_cols=67 Identities=15% Similarity=0.206 Sum_probs=42.7
Q ss_pred CcccCcHHHHHHHHHcCCCEEEeccccccccc-cCC-CC--CCcc--chHHHHHHHHHHHHHHCCCeEEEEcC
Q 016924 16 NFYFRYKEDIALVKQVGFDSIRFSISWSRILP-HGN-IS--GGVN--QQGVDFYNNLINELISNGLTPFVTLF 82 (380)
Q Consensus 16 ~~y~~~~eDi~l~~~lG~~~~R~si~W~ri~p-~~~-~~--g~~n--~~~~~~y~~~i~~l~~~gi~p~~tL~ 82 (380)
.-+.-..+-++-+++||++++=++=-...-.- .+. .. -.+| ....+-++.+|+++.++||++|+.+-
T Consensus 24 G~~~gi~~~l~yl~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~id~~~Gt~~~~~~lv~~ah~~gi~vilD~v 96 (543)
T TIGR02403 24 GDLRGIIEKLDYLKKLGVDYIWLNPFYVSPQKDNGYDVSDYYAINPLFGTMADFEELVSEAKKRNIKIMLDMV 96 (543)
T ss_pred cCHHHHHHhHHHHHHcCCCEEEECCcccCCCCCCCCCccccCccCcccCCHHHHHHHHHHHHHCCCEEEEEEC
Confidence 44555677789999999999977633221110 010 00 0111 22346689999999999999999863
No 70
>COG1501 Alpha-glucosidases, family 31 of glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=64.96 E-value=28 Score=38.10 Aligned_cols=102 Identities=20% Similarity=0.314 Sum_probs=65.7
Q ss_pred HcCCCEEEeccc-cccccccCCCCCCccchHHHHHHHHHHHHHHCCCeEEEEcCC---CCCcHh--HHHh-h--------
Q 016924 30 QVGFDSIRFSIS-WSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFH---WDTPQA--LEDE-Y-------- 94 (380)
Q Consensus 30 ~lG~~~~R~si~-W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~~tL~h---~~~P~~--l~~~-~-------- 94 (380)
++-+.++++++. |.+ ..+ .-++|..-+---+.+|+.|.+.||+.++.+.. -|.|.. +.++ |
T Consensus 293 ~IP~d~~~lD~~~~~~--~~~--~F~wd~~~FP~pk~mi~~l~~~Gikl~~~i~P~i~~d~~~~~e~~~~Gy~~k~~~g~ 368 (772)
T COG1501 293 DIPLDVFVLDIDFWMD--NWG--DFTWDPDRFPDPKQMIAELHEKGIKLIVIINPYIKQDSPLFKEAIEKGYFVKDPDGE 368 (772)
T ss_pred cCcceEEEEeehhhhc--ccc--ceEECcccCCCHHHHHHHHHhcCceEEEEeccccccCCchHHHHHHCCeEEECCCCC
Confidence 356789999995 876 222 23455544444579999999999999998763 233332 1111 0
Q ss_pred ----------C---CCCChhhHHHHHHHHHHHHHHhCCcCcEEEecCCCcccccc
Q 016924 95 ----------G---GFLSPKIVKDFGDYADLCFKEFGDRVKHWITLNEPETVGEC 136 (380)
Q Consensus 95 ----------g---gw~~~~~~~~f~~ya~~~~~~~~~~v~~w~t~NEp~~~~~~ 136 (380)
+ -+.||+..++|.+....-...+|- .-+|.=+|||.+....
T Consensus 369 ~~~~~~w~~~~a~~DFtnp~~r~Ww~~~~~~~l~d~Gv-~g~W~D~nEp~~~~~~ 422 (772)
T COG1501 369 IYQADFWPGNSAFPDFTNPDAREWWASDKKKNLLDLGV-DGFWNDMNEPEPFDGD 422 (772)
T ss_pred EeeecccCCcccccCCCCHHHHHHHHHHHHhHHHhcCc-cEEEccCCCCcccccc
Confidence 1 156999999998733333333432 4688999999987544
No 71
>cd06601 GH31_lyase_GLase GLases (alpha-1,4-glucan lyases) are glycosyl hydrolase family 31 (GH31) enzymes that degrade alpha-1,4-glucans and maltooligosaccharides via a nonhydrolytic pathway to yield 1,5-D-anhydrofructose from the nonreducing end. GLases cleave the bond between C1 and O1 of the nonreducing sugar residue of alpha-glucans to generate a monosaccharide product with a double bond between C1 and C2. This family corresponds to subgroup 2 in the Ernst et al classification of GH31 enzymes.
Probab=64.70 E-value=45 Score=32.64 Aligned_cols=107 Identities=14% Similarity=0.231 Sum_probs=62.4
Q ss_pred HHHHHHcC--CCEEEeccccccccccCCCCCCccchHHHHHHHHHHHHHHCCCeEEEEcCCC-CCcHhHHHh--hCCCCC
Q 016924 25 IALVKQVG--FDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFHW-DTPQALEDE--YGGFLS 99 (380)
Q Consensus 25 i~l~~~lG--~~~~R~si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~~tL~h~-~~P~~l~~~--~ggw~~ 99 (380)
++.+++.+ ++++=+.+.|..-. + .-++|.+.+.--.++++.|++.|++.++.+.-+ ..-..+... +.-|.+
T Consensus 30 ~~~~r~~~IP~D~i~lDidy~~~~--~--~Ft~d~~~FPdp~~mv~~L~~~G~klv~~i~P~i~~g~~~~~~~~~pDftn 105 (332)
T cd06601 30 VEGYRDNNIPLDGLHVDVDFQDNY--R--TFTTNGGGFPNPKEMFDNLHNKGLKCSTNITPVISYGGGLGSPGLYPDLGR 105 (332)
T ss_pred HHHHHHcCCCCceEEEcCchhcCC--C--ceeecCCCCCCHHHHHHHHHHCCCeEEEEecCceecCccCCCCceeeCCCC
Confidence 34455445 45777777775321 1 234555444445789999999999988765421 100000000 122678
Q ss_pred hhhHHHHHHHHHHHHHHhCCcCcEEEecCCCccccccc
Q 016924 100 PKIVKDFGDYADLCFKEFGDRVKHWITLNEPETVGECG 137 (380)
Q Consensus 100 ~~~~~~f~~ya~~~~~~~~~~v~~w~t~NEp~~~~~~g 137 (380)
|+..+.|.+..+.+.+ .|- .-+|+=+|||.++...+
T Consensus 106 p~ar~wW~~~~~~l~~-~Gv-~~~W~DmnEp~~~~~~~ 141 (332)
T cd06601 106 PDVREWWGNQYKYLFD-IGL-EFVWQDMTTPAIMPSYG 141 (332)
T ss_pred HHHHHHHHHHHHHHHh-CCC-ceeecCCCCcccccCCC
Confidence 8888887776554433 232 24889999999876533
No 72
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=64.65 E-value=12 Score=35.36 Aligned_cols=61 Identities=15% Similarity=0.164 Sum_probs=46.8
Q ss_pred cHHHHHHHHHcCCCEEEeccccccccccCCCCCCccchHHHHHHHHHHHHHHCCCeEEEEcC
Q 016924 21 YKEDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLF 82 (380)
Q Consensus 21 ~~eDi~l~~~lG~~~~R~si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~~tL~ 82 (380)
-.+|++.+.+.|++.+|+.++=|...-... .+.--.+.++...+++..+++.|+++.+++-
T Consensus 73 ~~~di~~a~~~g~~~i~i~~~~S~~~~~~~-~~~~~~e~~~~~~~~i~~a~~~G~~v~~~~e 133 (262)
T cd07948 73 HMDDARIAVETGVDGVDLVFGTSPFLREAS-HGKSITEIIESAVEVIEFVKSKGIEVRFSSE 133 (262)
T ss_pred CHHHHHHHHHcCcCEEEEEEecCHHHHHHH-hCCCHHHHHHHHHHHHHHHHHCCCeEEEEEE
Confidence 477999999999999999986554432211 1222356789999999999999999999984
No 73
>PRK05799 coproporphyrinogen III oxidase; Provisional
Probab=64.26 E-value=15 Score=36.46 Aligned_cols=97 Identities=11% Similarity=0.189 Sum_probs=56.0
Q ss_pred CcHHHHHHHHHcCCCEEEeccccccccccCC-CCCCccchHHHHHHHHHHHHHHCCCeEE-EEcCCCCCcHhHHHhhCCC
Q 016924 20 RYKEDIALVKQVGFDSIRFSISWSRILPHGN-ISGGVNQQGVDFYNNLINELISNGLTPF-VTLFHWDTPQALEDEYGGF 97 (380)
Q Consensus 20 ~~~eDi~l~~~lG~~~~R~si~W~ri~p~~~-~~g~~n~~~~~~y~~~i~~l~~~gi~p~-~tL~h~~~P~~l~~~~ggw 97 (380)
.-+|.++.|+++|++.+-+++ ..+-+.-- .-|+.. ..+-..+.|+.+++.|+..+ +.|- +++|.
T Consensus 97 ~t~e~l~~l~~~G~~rvsiGv--qS~~d~~L~~l~R~~--~~~~~~~ai~~l~~~g~~~v~~dli-~GlPg--------- 162 (374)
T PRK05799 97 FTEEKLKILKSMGVNRLSIGL--QAWQNSLLKYLGRIH--TFEEFLENYKLARKLGFNNINVDLM-FGLPN--------- 162 (374)
T ss_pred CCHHHHHHHHHcCCCEEEEEC--ccCCHHHHHHcCCCC--CHHHHHHHHHHHHHcCCCcEEEEee-cCCCC---------
Confidence 346789999999999655555 22222110 002211 23557788999999999743 5543 45552
Q ss_pred CChhhHHHHHHHHHHHHHHhCCcCcEEEecCCCccc
Q 016924 98 LSPKIVKDFGDYADLCFKEFGDRVKHWITLNEPETV 133 (380)
Q Consensus 98 ~~~~~~~~f~~ya~~~~~~~~~~v~~w~t~NEp~~~ 133 (380)
++.+.|.+-.+.+.+.=-+++..+...-+|+..
T Consensus 163 ---qt~e~~~~~l~~~~~l~~~~is~y~l~~~pgT~ 195 (374)
T PRK05799 163 ---QTLEDWKETLEKVVELNPEHISCYSLIIEEGTP 195 (374)
T ss_pred ---CCHHHHHHHHHHHHhcCCCEEEEeccEecCCCH
Confidence 234556666666554323566665544477654
No 74
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=64.12 E-value=24 Score=33.74 Aligned_cols=87 Identities=14% Similarity=0.130 Sum_probs=62.3
Q ss_pred CcHHHHHHHHHcCCCEEEeccccccccccCCCCCCccchHHHHHHHHHHHHHHCCCeEEEEcCC-CCCcHhHHHhhCCCC
Q 016924 20 RYKEDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFH-WDTPQALEDEYGGFL 98 (380)
Q Consensus 20 ~~~eDi~l~~~lG~~~~R~si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~~tL~h-~~~P~~l~~~~ggw~ 98 (380)
+-.+|+++..+.|++.+++.++=|...-... -+.-.++.++...++|+.++++|+++..++.. |..| +.|..
T Consensus 80 ~~~~~ie~A~~~g~~~v~i~~~~s~~~~~~n-~~~~~~e~l~~~~~~v~~ak~~g~~v~~~i~~~~~~~------~~~~~ 152 (287)
T PRK05692 80 PNLKGLEAALAAGADEVAVFASASEAFSQKN-INCSIAESLERFEPVAEAAKQAGVRVRGYVSCVLGCP------YEGEV 152 (287)
T ss_pred cCHHHHHHHHHcCCCEEEEEEecCHHHHHHH-hCCCHHHHHHHHHHHHHHHHHcCCEEEEEEEEEecCC------CCCCC
Confidence 4689999999999999999986554432211 13334567889999999999999999887763 5555 24433
Q ss_pred ChhhHHHHHHHHHHHHHH
Q 016924 99 SPKIVKDFGDYADLCFKE 116 (380)
Q Consensus 99 ~~~~~~~f~~ya~~~~~~ 116 (380)
+ .+.+.++++.+.+.
T Consensus 153 ~---~~~~~~~~~~~~~~ 167 (287)
T PRK05692 153 P---PEAVADVAERLFAL 167 (287)
T ss_pred C---HHHHHHHHHHHHHc
Confidence 3 56778888877553
No 75
>COG1523 PulA Type II secretory pathway, pullulanase PulA and related glycosidases [Carbohydrate transport and metabolism]
Probab=63.97 E-value=16 Score=39.33 Aligned_cols=57 Identities=12% Similarity=0.299 Sum_probs=39.1
Q ss_pred HHHHHHcCCCEEEe----ccccccccccCCCC----------------CCccc---hHHHHHHHHHHHHHHCCCeEEEEc
Q 016924 25 IALVKQVGFDSIRF----SISWSRILPHGNIS----------------GGVNQ---QGVDFYNNLINELISNGLTPFVTL 81 (380)
Q Consensus 25 i~l~~~lG~~~~R~----si~W~ri~p~~~~~----------------g~~n~---~~~~~y~~~i~~l~~~gi~p~~tL 81 (380)
|+-+|+|||+++.+ ++.+.+........ ...+. ..+.=+++||.+|.++||++|+.+
T Consensus 206 i~yLk~LGvtaVeLLPV~~~~~~~~l~~~gl~n~WGYdP~~fFAp~~~Yss~p~p~~~i~EfK~mV~~lHkaGI~VILDV 285 (697)
T COG1523 206 IDYLKDLGVTAVELLPVFDFYDEPHLDKSGLNNNWGYDPLNFFAPEGRYASNPEPATRIKEFKDMVKALHKAGIEVILDV 285 (697)
T ss_pred HHHHHHhCCceEEEecceEEeccccccccccccccCCCcccccCCCccccCCCCcchHHHHHHHHHHHHHHcCCEEEEEE
Confidence 99999999999985 33343333211000 11122 257779999999999999999974
No 76
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=63.68 E-value=14 Score=38.76 Aligned_cols=56 Identities=21% Similarity=0.446 Sum_probs=37.5
Q ss_pred cHHHHHHHHHcCCCEEEec-c-------cccc-----ccccCCCCCCccchHHHHHHHHHHHHHHCCCeEEEEcC
Q 016924 21 YKEDIALVKQVGFDSIRFS-I-------SWSR-----ILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLF 82 (380)
Q Consensus 21 ~~eDi~l~~~lG~~~~R~s-i-------~W~r-----i~p~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~~tL~ 82 (380)
..+-++-+|+||++++=+. | .|.- ..|++. -|. .+=++++|++|.++||++|+.+-
T Consensus 113 i~~~l~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~~~~~~~~-~G~-----~~e~k~lV~~aH~~Gi~VilD~V 181 (542)
T TIGR02402 113 AIEKLPYLADLGITAIELMPVAQFPGTRGWGYDGVLPYAPHNA-YGG-----PDDLKALVDAAHGLGLGVILDVV 181 (542)
T ss_pred HHHhhHHHHHcCCCEEEeCccccCCCCCCCCCCccCccccccc-cCC-----HHHHHHHHHHHHHCCCEEEEEEc
Confidence 4455899999999998775 2 1210 011111 132 45589999999999999999743
No 77
>COG3589 Uncharacterized conserved protein [Function unknown]
Probab=63.62 E-value=36 Score=33.26 Aligned_cols=69 Identities=22% Similarity=0.320 Sum_probs=50.4
Q ss_pred HHHHHHcCCCEEEeccccccccccCCCCCCccchHHHHHHHHHHHHHHCCCeEEEEcCCCCCcHhHHHhhCCCCChhhHH
Q 016924 25 IALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFHWDTPQALEDEYGGFLSPKIVK 104 (380)
Q Consensus 25 i~l~~~lG~~~~R~si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~~tL~h~~~P~~l~~~~ggw~~~~~~~ 104 (380)
|++|.+.|++-+=.|+- .|++ .+...++.+.++++.+.+.|+++||.. -|+-|.. -|| +.+.++
T Consensus 22 i~~~~~~Gf~~IFtsl~----~~~~-----~~~~~~~~~~ell~~Anklg~~vivDv----nPsil~~--l~~-S~~~l~ 85 (360)
T COG3589 22 IDRMHKYGFKRIFTSLL----IPEE-----DAELYFHRFKELLKEANKLGLRVIVDV----NPSILKE--LNI-SLDNLS 85 (360)
T ss_pred HHHHHHcCccceeeecc----cCCc-----hHHHHHHHHHHHHHHHHhcCcEEEEEc----CHHHHhh--cCC-ChHHHH
Confidence 78889999876666553 2333 333578999999999999999999998 4887764 466 344556
Q ss_pred HHHHH
Q 016924 105 DFGDY 109 (380)
Q Consensus 105 ~f~~y 109 (380)
.|.+.
T Consensus 86 ~f~e~ 90 (360)
T COG3589 86 RFQEL 90 (360)
T ss_pred HHHHh
Confidence 66655
No 78
>cd06592 GH31_glucosidase_KIAA1161 KIAA1161 is an uncharacterized Homo sapiens protein with a glycosyl hydrolase family 31 (GH31) domain that is homologous to the Escherichia coli YihQ glucosidase. Orthologs of KIA1161 are found in eukaryotes and prokaryotes. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=63.34 E-value=41 Score=32.33 Aligned_cols=105 Identities=16% Similarity=0.196 Sum_probs=70.0
Q ss_pred HHHHHHHHHcCC--CEEEeccccccccccCCCCCCccchHHHHHHHHHHHHHHCCCeEEEEcCCCC---CcHhHH-----
Q 016924 22 KEDIALVKQVGF--DSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFHWD---TPQALE----- 91 (380)
Q Consensus 22 ~eDi~l~~~lG~--~~~R~si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~~tL~h~~---~P~~l~----- 91 (380)
.+-++.+++.|+ +++=+.+.|..-. + +-.+|.+.+.--.++++.|+++|+++++.+.=+- .+..-+
T Consensus 33 ~~~~~~~~~~~iP~d~i~iD~~w~~~~--g--~f~~d~~~FPdp~~mi~~l~~~G~k~~l~i~P~i~~~s~~~~e~~~~g 108 (303)
T cd06592 33 LNYAQEIIDNGFPNGQIEIDDNWETCY--G--DFDFDPTKFPDPKGMIDQLHDLGFRVTLWVHPFINTDSENFREAVEKG 108 (303)
T ss_pred HHHHHHHHHcCCCCCeEEeCCCccccC--C--ccccChhhCCCHHHHHHHHHHCCCeEEEEECCeeCCCCHHHHhhhhCC
Confidence 344678888895 4777777785432 2 2355555555578999999999999998765321 111111
Q ss_pred ----HhhC----------C------CCChhhHHHHHHHHHHHHHHhCCcCcEEEecCCCc
Q 016924 92 ----DEYG----------G------FLSPKIVKDFGDYADLCFKEFGDRVKHWITLNEPE 131 (380)
Q Consensus 92 ----~~~g----------g------w~~~~~~~~f~~ya~~~~~~~~~~v~~w~t~NEp~ 131 (380)
+.-| | +.||+..+.|.+..+.+....|= --+|+=+|||.
T Consensus 109 ~~vk~~~g~~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~~~Gv-dg~w~D~~E~~ 167 (303)
T cd06592 109 YLVSEPSGDIPALTRWWNGTAAVLDFTNPEAVDWFLSRLKSLQEKYGI-DSFKFDAGEAS 167 (303)
T ss_pred eEEECCCCCCCcccceecCCcceEeCCCHHHHHHHHHHHHHHHHHhCC-cEEEeCCCCcc
Confidence 0001 1 56899999999998888877753 35678999997
No 79
>PRK10933 trehalose-6-phosphate hydrolase; Provisional
Probab=62.57 E-value=13 Score=38.95 Aligned_cols=66 Identities=12% Similarity=0.247 Sum_probs=43.1
Q ss_pred CCcccCcHHHHHHHHHcCCCEEEeccccccccccCCC-CCC-----cc--chHHHHHHHHHHHHHHCCCeEEEEcC
Q 016924 15 DNFYFRYKEDIALVKQVGFDSIRFSISWSRILPHGNI-SGG-----VN--QQGVDFYNNLINELISNGLTPFVTLF 82 (380)
Q Consensus 15 ~~~y~~~~eDi~l~~~lG~~~~R~si~W~ri~p~~~~-~g~-----~n--~~~~~~y~~~i~~l~~~gi~p~~tL~ 82 (380)
..-+.-..+.++.+++||++++=++=-+.. |...- -.. +| ....+-++++|+++.++||++|+.+-
T Consensus 29 ~Gdl~gi~~~ldyl~~lGv~~i~l~P~~~~--~~~~~gY~~~d~~~id~~~Gt~~d~~~lv~~~h~~gi~vilD~V 102 (551)
T PRK10933 29 TGDLRGVTQRLDYLQKLGVDAIWLTPFYVS--PQVDNGYDVANYTAIDPTYGTLDDFDELVAQAKSRGIRIILDMV 102 (551)
T ss_pred CcCHHHHHHhhHHHHhCCCCEEEECCCCCC--CCCCCCCCcccCCCcCcccCCHHHHHHHHHHHHHCCCEEEEEEC
Confidence 344555668899999999999988643311 21100 001 11 12345689999999999999999754
No 80
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=62.43 E-value=45 Score=31.75 Aligned_cols=102 Identities=12% Similarity=0.099 Sum_probs=63.0
Q ss_pred cCCcccCcHHHHHHHHHcCCCEEEeccccccccccCCCCCCccchHHHHHHHHHHHHHHCCCeEEEEcCCCC------Cc
Q 016924 14 ADNFYFRYKEDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFHWD------TP 87 (380)
Q Consensus 14 a~~~y~~~~eDi~l~~~lG~~~~R~si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~~tL~h~~------~P 87 (380)
+.-.+..+++=|+..+++|+..+=+.--|+.-..... .+......-....++++..++.|+.+++-.+|-+ +=
T Consensus 27 ~g~~t~~~k~yIDfAa~~G~eYvlvD~GW~~~~~~~~-~d~~~~~~~~dl~elv~Ya~~KgVgi~lw~~~~~~~~~~~~~ 105 (273)
T PF10566_consen 27 HGATTETQKRYIDFAAEMGIEYVLVDAGWYGWEKDDD-FDFTKPIPDFDLPELVDYAKEKGVGIWLWYHSETGGNVANLE 105 (273)
T ss_dssp BSSSHHHHHHHHHHHHHTT-SEEEEBTTCCGS--TTT---TT-B-TT--HHHHHHHHHHTT-EEEEEEECCHTTBHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEecccccccccccc-ccccccCCccCHHHHHHHHHHcCCCEEEEEeCCcchhhHhHH
Confidence 3456778999999999999999999999987332210 0111111114579999999999999999988755 11
Q ss_pred HhHHH---hh---C------CC---CChhhHHHHHHHHHHHHHH
Q 016924 88 QALED---EY---G------GF---LSPKIVKDFGDYADLCFKE 116 (380)
Q Consensus 88 ~~l~~---~~---g------gw---~~~~~~~~f~~ya~~~~~~ 116 (380)
.-+.+ .| | ++ .+.+.+..+.+-++.++++
T Consensus 106 ~~~~~~f~~~~~~Gv~GvKidF~~~d~Q~~v~~y~~i~~~AA~~ 149 (273)
T PF10566_consen 106 KQLDEAFKLYAKWGVKGVKIDFMDRDDQEMVNWYEDILEDAAEY 149 (273)
T ss_dssp CCHHHHHHHHHHCTEEEEEEE--SSTSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCCEEeeCcCCCCCHHHHHHHHHHHHHHHHc
Confidence 11111 12 1 22 3455778888888877764
No 81
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=62.04 E-value=32 Score=35.41 Aligned_cols=56 Identities=21% Similarity=0.206 Sum_probs=40.6
Q ss_pred cccCcHHH-----HHHHHHcCCCEEEeccccccccccCCCCCCccchHHHHHHHHHHHHHHCCCeEEEEcCCCCCc
Q 016924 17 FYFRYKED-----IALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFHWDTP 87 (380)
Q Consensus 17 ~y~~~~eD-----i~l~~~lG~~~~R~si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~~tL~h~~~P 87 (380)
.|..|.+| ++..++.|++.+|+..+-+.+ +-....++.+++.|+.+..++.+-..|
T Consensus 88 G~~~~~dDvv~~fv~~A~~~Gvd~irif~~lnd~---------------~n~~~~i~~ak~~G~~v~~~i~~t~~p 148 (467)
T PRK14041 88 GYRHYADDVVELFVKKVAEYGLDIIRIFDALNDI---------------RNLEKSIEVAKKHGAHVQGAISYTVSP 148 (467)
T ss_pred CcccccchhhHHHHHHHHHCCcCEEEEEEeCCHH---------------HHHHHHHHHHHHCCCEEEEEEEeccCC
Confidence 35668888 899999999999999865432 234666788888888877776543334
No 82
>PRK09441 cytoplasmic alpha-amylase; Reviewed
Probab=61.77 E-value=14 Score=38.10 Aligned_cols=65 Identities=15% Similarity=0.212 Sum_probs=42.2
Q ss_pred ccCcHHHHHHHHHcCCCEEEeccccccc--------cccCCC-------CCCcc--chHHHHHHHHHHHHHHCCCeEEEE
Q 016924 18 YFRYKEDIALVKQVGFDSIRFSISWSRI--------LPHGNI-------SGGVN--QQGVDFYNNLINELISNGLTPFVT 80 (380)
Q Consensus 18 y~~~~eDi~l~~~lG~~~~R~si~W~ri--------~p~~~~-------~g~~n--~~~~~~y~~~i~~l~~~gi~p~~t 80 (380)
|.--.+-++-+++||++++=++=.+.-. .|.... .|.+| .-..+=++++|++|.++||++|+.
T Consensus 21 ~~~I~~kldyl~~LGvtaIwl~P~~~~~~~~~~hgY~~~D~~~~~~~~~~~~id~~fGt~~dl~~Li~~~H~~Gi~vi~D 100 (479)
T PRK09441 21 WNRLAERAPELAEAGITAVWLPPAYKGTSGGYDVGYGVYDLFDLGEFDQKGTVRTKYGTKEELLNAIDALHENGIKVYAD 100 (479)
T ss_pred HHHHHHHHHHHHHcCCCEEEeCCCccCCCCCCCCCCCeecccccccccccCCcCcCcCCHHHHHHHHHHHHHCCCEEEEE
Confidence 4445677899999999999887533221 121100 00122 113455899999999999999997
Q ss_pred cC
Q 016924 81 LF 82 (380)
Q Consensus 81 L~ 82 (380)
+-
T Consensus 101 ~V 102 (479)
T PRK09441 101 VV 102 (479)
T ss_pred EC
Confidence 53
No 83
>cd06602 GH31_MGAM_SI_GAA This family includes the following three closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), and lysosomal acid alpha-glucosidase (GAA), also known as acid-maltase. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal domain found near the membrane-bound end, and a C-terminal luminal domain. Both of
Probab=60.88 E-value=44 Score=32.75 Aligned_cols=106 Identities=18% Similarity=0.153 Sum_probs=65.3
Q ss_pred HHHHHHHHHcCCC--EEEeccccccccccCCCCCCccchHHHHH--HHHHHHHHHCCCeEEEEcCCCCCc--------Hh
Q 016924 22 KEDIALVKQVGFD--SIRFSISWSRILPHGNISGGVNQQGVDFY--NNLINELISNGLTPFVTLFHWDTP--------QA 89 (380)
Q Consensus 22 ~eDi~l~~~lG~~--~~R~si~W~ri~p~~~~~g~~n~~~~~~y--~~~i~~l~~~gi~p~~tL~h~~~P--------~~ 89 (380)
.+-++.+++.|+. ++=+.+.|..-. + +-.+|.+.+--- +++|+.|+++|+++++.+.-+-.+ .+
T Consensus 27 ~~~~~~~r~~~iP~d~i~lD~~~~~~~--~--~f~~d~~~FPdp~~~~mi~~L~~~G~k~~~~i~P~v~~~~~~~~~~~~ 102 (339)
T cd06602 27 KEVVENMRAAGIPLDVQWNDIDYMDRR--R--DFTLDPVRFPGLKMPEFVDELHANGQHYVPILDPAISANEPTGSYPPY 102 (339)
T ss_pred HHHHHHHHHhCCCcceEEECcccccCc--c--ceecccccCCCccHHHHHHHHHHCCCEEEEEEeCccccCcCCCCCHHH
Confidence 3446777777765 454555664321 1 123444333334 899999999999999987644322 11
Q ss_pred HHH--h-----------h--------C---CCCChhhHHHHHHHHHHHHHHhCCcCcEEEecCCCcc
Q 016924 90 LED--E-----------Y--------G---GFLSPKIVKDFGDYADLCFKEFGDRVKHWITLNEPET 132 (380)
Q Consensus 90 l~~--~-----------~--------g---gw~~~~~~~~f~~ya~~~~~~~~~~v~~w~t~NEp~~ 132 (380)
-+. + | + -+.||+..+.|.+..+.+....|- .-+|.=+|||..
T Consensus 103 ~e~~~~g~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~~~~Gv-dg~w~D~~Ep~~ 168 (339)
T cd06602 103 DRGLEMDVFIKNDDGSPYIGKVWPGYTVFPDFLNPNTQEWWTDEIKDFHDQVPF-DGLWIDMNEPSN 168 (339)
T ss_pred HHHHHCCeEEECCCCCEEEEEeCCCCCcCcCCCCHHHHHHHHHHHHHHHhcCCC-cEEEecCCCCch
Confidence 110 0 1 1 156888888888877766655542 356789999964
No 84
>PRK14706 glycogen branching enzyme; Provisional
Probab=60.49 E-value=37 Score=36.41 Aligned_cols=90 Identities=18% Similarity=0.267 Sum_probs=51.4
Q ss_pred HHHHHcCCCEEEec-c-------ccccccccCCCCCCcc--chHHHHHHHHHHHHHHCCCeEEEEcC--CCC--------
Q 016924 26 ALVKQVGFDSIRFS-I-------SWSRILPHGNISGGVN--QQGVDFYNNLINELISNGLTPFVTLF--HWD-------- 85 (380)
Q Consensus 26 ~l~~~lG~~~~R~s-i-------~W~ri~p~~~~~g~~n--~~~~~~y~~~i~~l~~~gi~p~~tL~--h~~-------- 85 (380)
+-+|+||++++=+. | +|-- .|... -.++ ....+=++.+|++|.++||++|+.+. |+.
T Consensus 175 ~ylk~lG~t~velmPv~e~~~~~~wGY-~~~~~--~~~~~~~g~~~~~~~lv~~~H~~gi~VilD~v~nH~~~~~~~l~~ 251 (639)
T PRK14706 175 EYVTYMGYTHVELLGVMEHPFDGSWGY-QVTGY--YAPTSRLGTPEDFKYLVNHLHGLGIGVILDWVPGHFPTDESGLAH 251 (639)
T ss_pred HHHHHcCCCEEEccchhcCCCCCCCCc-Ccccc--cccccccCCHHHHHHHHHHHHHCCCEEEEEecccccCcchhhhhc
Confidence 56899999997765 2 1210 00000 0000 11234589999999999999999743 432
Q ss_pred ---CcHh-HHHhhCC----C-------CChhhHHHHHHHHHHHHHHhC
Q 016924 86 ---TPQA-LEDEYGG----F-------LSPKIVKDFGDYADLCFKEFG 118 (380)
Q Consensus 86 ---~P~~-l~~~~gg----w-------~~~~~~~~f~~ya~~~~~~~~ 118 (380)
.|.+ ..+...| | .++++.+.+.+=++.-+++|+
T Consensus 252 ~dg~~~y~~~~~~~g~~~~w~~~~~~~~~~eVr~~l~~~~~~W~~e~~ 299 (639)
T PRK14706 252 FDGGPLYEYADPRKGYHYDWNTYIFDYGRNEVVMFLIGSALKWLQDFH 299 (639)
T ss_pred cCCCcceeccCCcCCcCCCCCCcccCCCCHHHHHHHHHHHHHHHHHhC
Confidence 1211 0000011 2 256777777788888888774
No 85
>PRK07379 coproporphyrinogen III oxidase; Provisional
Probab=60.35 E-value=35 Score=34.23 Aligned_cols=105 Identities=13% Similarity=0.181 Sum_probs=62.3
Q ss_pred CcHHHHHHHHHcCCCEEEeccc-c-ccccccCCCCCC-ccchHHHHHHHHHHHHHHCCCe-EEEEcCCCCCcHhHHHhhC
Q 016924 20 RYKEDIALVKQVGFDSIRFSIS-W-SRILPHGNISGG-VNQQGVDFYNNLINELISNGLT-PFVTLFHWDTPQALEDEYG 95 (380)
Q Consensus 20 ~~~eDi~l~~~lG~~~~R~si~-W-~ri~p~~~~~g~-~n~~~~~~y~~~i~~l~~~gi~-p~~tL~h~~~P~~l~~~~g 95 (380)
.-++.++.|+++|+|.+-+++. - .++.-.- |+ .+ .+-..+.++.+++.|++ +-++|- +++|.
T Consensus 113 lt~e~l~~l~~~GvnrislGvQS~~d~~L~~l---~R~~~---~~~~~~ai~~l~~~G~~~v~~dlI-~GlPg------- 178 (400)
T PRK07379 113 FDLEQLQGYRSLGVNRVSLGVQAFQDELLALC---GRSHR---VKDIFAAVDLIHQAGIENFSLDLI-SGLPH------- 178 (400)
T ss_pred CCHHHHHHHHHCCCCEEEEEcccCCHHHHHHh---CCCCC---HHHHHHHHHHHHHcCCCeEEEEee-cCCCC-------
Confidence 3468899999999997777763 1 2222111 11 22 23456788999999998 556664 56662
Q ss_pred CCCChhhHHHHHHHHHHHHHHhCCcCcEEEecCCCccccccccccCcc
Q 016924 96 GFLSPKIVKDFGDYADLCFKEFGDRVKHWITLNEPETVGECGYAKGTK 143 (380)
Q Consensus 96 gw~~~~~~~~f~~ya~~~~~~~~~~v~~w~t~NEp~~~~~~gy~~g~~ 143 (380)
++.+.|.+=++.+.+-=-++|..+...-||.......+..|.+
T Consensus 179 -----qt~e~~~~tl~~~~~l~p~~is~y~L~~~pgT~l~~~~~~g~~ 221 (400)
T PRK07379 179 -----QTLEDWQASLEAAIALNPTHLSCYDLVLEPGTAFGKQYQPGKA 221 (400)
T ss_pred -----CCHHHHHHHHHHHHcCCCCEEEEecceecCCchhHHHhhcCCC
Confidence 2344455544444443346677777777777544333444443
No 86
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=60.11 E-value=33 Score=36.41 Aligned_cols=50 Identities=18% Similarity=0.193 Sum_probs=33.0
Q ss_pred ccCcHHH-----HHHHHHcCCCEEEeccccccccccCCCCCCccchHHHHHHHHHHHHHHCCCeEEEEcC
Q 016924 18 YFRYKED-----IALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLF 82 (380)
Q Consensus 18 y~~~~eD-----i~l~~~lG~~~~R~si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~~tL~ 82 (380)
|.+|.+| +++.++.|++.+|++.+.+.+ +-....|+.+++.|....+++.
T Consensus 91 ~~~ypddvv~~~v~~a~~~Gid~~rifd~lnd~---------------~~~~~ai~~ak~~G~~~~~~i~ 145 (593)
T PRK14040 91 YRHYADDVVERFVERAVKNGMDVFRVFDAMNDP---------------RNLETALKAVRKVGAHAQGTLS 145 (593)
T ss_pred cccCcHHHHHHHHHHHHhcCCCEEEEeeeCCcH---------------HHHHHHHHHHHHcCCeEEEEEE
Confidence 6667666 899999999999999654332 2244555666666665544443
No 87
>PRK09505 malS alpha-amylase; Reviewed
Probab=60.10 E-value=17 Score=39.25 Aligned_cols=62 Identities=18% Similarity=0.336 Sum_probs=40.8
Q ss_pred cHHHHHHHHHcCCCEEEecccccccc-----------c----cCC--C-CCCcc--chHHHHHHHHHHHHHHCCCeEEEE
Q 016924 21 YKEDIALVKQVGFDSIRFSISWSRIL-----------P----HGN--I-SGGVN--QQGVDFYNNLINELISNGLTPFVT 80 (380)
Q Consensus 21 ~~eDi~l~~~lG~~~~R~si~W~ri~-----------p----~~~--~-~g~~n--~~~~~~y~~~i~~l~~~gi~p~~t 80 (380)
..+-++.+++||++++=++=-...+. | .+. . -..+| ....+=++++|+++.++||++|+.
T Consensus 232 i~~kLdyl~~LGv~aIwlsPi~~~~~~~~~~g~~g~~~~~~yhgY~~~D~~~id~~~Gt~~dfk~Lv~~aH~~Gi~VilD 311 (683)
T PRK09505 232 LTEKLDYLQQLGVNALWISSPLEQIHGWVGGGTKGDFPHYAYHGYYTLDWTKLDANMGTEADLRTLVDEAHQRGIRILFD 311 (683)
T ss_pred HHHhhHHHHHcCCCEEEeCccccccccccccccccCCCcCCCCCCCccccccCCCCCCCHHHHHHHHHHHHHCCCEEEEE
Confidence 45568899999999998874433321 1 000 0 00112 224566999999999999999997
Q ss_pred cC
Q 016924 81 LF 82 (380)
Q Consensus 81 L~ 82 (380)
+-
T Consensus 312 ~V 313 (683)
T PRK09505 312 VV 313 (683)
T ss_pred EC
Confidence 53
No 88
>PF12876 Cellulase-like: Sugar-binding cellulase-like; InterPro: IPR024778 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This entry represents a family of putative cellulase enzymes.; PDB: 3GYC_B.
Probab=59.12 E-value=5.8 Score=30.64 Aligned_cols=19 Identities=37% Similarity=0.693 Sum_probs=13.4
Q ss_pred HHHHhCC--cCcEEEecCC-Cc
Q 016924 113 CFKEFGD--RVKHWITLNE-PE 131 (380)
Q Consensus 113 ~~~~~~~--~v~~w~t~NE-p~ 131 (380)
++++||+ +|.+|..+|| |+
T Consensus 1 iv~~~~~~~~Il~Wdl~NE~p~ 22 (88)
T PF12876_consen 1 IVTRFGYDPRILAWDLWNEPPN 22 (88)
T ss_dssp -HHHTT-GGGEEEEESSTTTT-
T ss_pred CchhhcCCCCEEEEEeecCCCC
Confidence 3567776 5899999999 66
No 89
>PF03659 Glyco_hydro_71: Glycosyl hydrolase family 71 ; InterPro: IPR005197 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of alpha-1,3-glucanases belonging to glycoside hydrolase family 71 (GH71 from CAZY).
Probab=58.46 E-value=44 Score=33.49 Aligned_cols=50 Identities=18% Similarity=0.351 Sum_probs=40.3
Q ss_pred CcHHHHHHHHHcCCCEEEeccccccccccCCCCCCccchHHHHHHHHHHHHHHCCCeEEEEc
Q 016924 20 RYKEDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTL 81 (380)
Q Consensus 20 ~~~eDi~l~~~lG~~~~R~si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~~tL 81 (380)
.|++||+++++.||+.|=+.|- .. ..++. +....+++.+.+.|.+.++.+
T Consensus 18 dw~~di~~A~~~GIDgFaLNig------~~---d~~~~---~~l~~a~~AA~~~gFKlf~Sf 67 (386)
T PF03659_consen 18 DWEADIRLAQAAGIDGFALNIG------SS---DSWQP---DQLADAYQAAEAVGFKLFFSF 67 (386)
T ss_pred HHHHHHHHHHHcCCCEEEEecc------cC---CcccH---HHHHHHHHHHHhcCCEEEEEe
Confidence 4899999999999999988885 11 23443 567889999999999999886
No 90
>TIGR02456 treS_nterm trehalose synthase. Trehalose synthase interconverts maltose and alpha, alpha-trehalose by transglucosylation. This is one of at least three mechanisms for biosynthesis of trehalose, an important and widespread compatible solute. However, it is not driven by phosphate activation of sugars and its physiological role may tend toward trehalose degradation. This view is accentuated by numerous examples of fusion to a probable maltokinase domain. The sequence region described by this model is found both as the whole of a trehalose synthase and as the N-terminal region of a larger fusion protein that includes trehalose synthase activity. Several of these fused trehalose synthases have a domain homologous to proteins with maltokinase activity from Actinoplanes missouriensis and Streptomyces coelicolor (PubMed:15378530).
Probab=58.19 E-value=16 Score=38.18 Aligned_cols=64 Identities=16% Similarity=0.336 Sum_probs=40.0
Q ss_pred ccCcHHHHHHHHHcCCCEEEecccccccc-ccCC-CC--CCccc--hHHHHHHHHHHHHHHCCCeEEEEc
Q 016924 18 YFRYKEDIALVKQVGFDSIRFSISWSRIL-PHGN-IS--GGVNQ--QGVDFYNNLINELISNGLTPFVTL 81 (380)
Q Consensus 18 y~~~~eDi~l~~~lG~~~~R~si~W~ri~-p~~~-~~--g~~n~--~~~~~y~~~i~~l~~~gi~p~~tL 81 (380)
+.-..+-++-+++||++++=++=-.+.-. ..+. .. -.+|+ ...+=++++|+++.++||++|+.+
T Consensus 27 l~gi~~~Ldyl~~LGv~~i~L~Pi~~~~~~~~gY~~~dy~~vd~~~Gt~~df~~Lv~~ah~~Gi~vilD~ 96 (539)
T TIGR02456 27 FPGLTSKLDYLKWLGVDALWLLPFFQSPLRDDGYDVSDYRAILPEFGTIDDFKDFVDEAHARGMRVIIDL 96 (539)
T ss_pred HHHHHHhHHHHHHCCCCEEEECCCcCCCCCCCCCCcccccccChhhCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 34456678999999999987763221100 0000 00 01221 224568999999999999999975
No 91
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=57.43 E-value=40 Score=32.01 Aligned_cols=85 Identities=13% Similarity=0.139 Sum_probs=60.5
Q ss_pred cHHHHHHHHHcCCCEEEeccccccccccCCCCCCccchHHHHHHHHHHHHHHCCCeEEEEcCC-CCCcHhHHHhhCCCCC
Q 016924 21 YKEDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFH-WDTPQALEDEYGGFLS 99 (380)
Q Consensus 21 ~~eDi~l~~~lG~~~~R~si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~~tL~h-~~~P~~l~~~~ggw~~ 99 (380)
-.+|++...+.|++.+++.++=|...-... -+.--.+.++...+.+..++++|+++.+++.. |+.| +.|-.
T Consensus 75 ~~~dv~~A~~~g~~~i~i~~~~Sd~~~~~~-~~~s~~~~~~~~~~~v~~ak~~G~~v~~~i~~~f~~~------~~~~~- 146 (274)
T cd07938 75 NLRGAERALAAGVDEVAVFVSASETFSQKN-INCSIAESLERFEPVAELAKAAGLRVRGYVSTAFGCP------YEGEV- 146 (274)
T ss_pred CHHHHHHHHHcCcCEEEEEEecCHHHHHHH-cCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeEecCC------CCCCC-
Confidence 478999999999999999986554432211 13333567889999999999999999988763 5555 13322
Q ss_pred hhhHHHHHHHHHHHHH
Q 016924 100 PKIVKDFGDYADLCFK 115 (380)
Q Consensus 100 ~~~~~~f~~ya~~~~~ 115 (380)
..+.+.++++.+.+
T Consensus 147 --~~~~~~~~~~~~~~ 160 (274)
T cd07938 147 --PPERVAEVAERLLD 160 (274)
T ss_pred --CHHHHHHHHHHHHH
Confidence 35667777777654
No 92
>PF05089 NAGLU: Alpha-N-acetylglucosaminidase (NAGLU) tim-barrel domain; InterPro: IPR024733 Alpha-N-acetylglucosaminidase is a lysosomal enzyme that is required for the stepwise degradation of heparan sulphate []. Mutations on the alpha-N-acetylglucosaminidase gene can lead to mucopolysaccharidosis type IIIB (MPS IIIB; or Sanfilippo syndrome type B), characterised by neurological dysfunction but relatively mild somatic manifestations []. Alpha-N-acetylglucosaminidase is composed of three domains. This entry represents the central domain, which has a tim barrel fold [].; PDB: 4A4A_A 2VC9_A 2VCC_A 2VCB_A 2VCA_A.
Probab=56.60 E-value=34 Score=33.47 Aligned_cols=111 Identities=23% Similarity=0.464 Sum_probs=59.8
Q ss_pred ccCcHHHHHHHHHcCCCEEEecc----ccccccccC--------------------------CCCCCcc----chHHHHH
Q 016924 18 YFRYKEDIALVKQVGFDSIRFSI----SWSRILPHG--------------------------NISGGVN----QQGVDFY 63 (380)
Q Consensus 18 y~~~~eDi~l~~~lG~~~~R~si----~W~ri~p~~--------------------------~~~g~~n----~~~~~~y 63 (380)
|.||++.|+.|+=-|||..=--+ -|-|++-+- .-.|.+. .+-.+-=
T Consensus 18 W~rWEreIDWMALnGiNl~La~~GqEavw~~v~~~~G~t~~ei~~ff~GPA~laW~rMgNl~gwgGPLp~~w~~~q~~Lq 97 (333)
T PF05089_consen 18 WERWEREIDWMALNGINLPLAIVGQEAVWQRVLRELGLTDEEIREFFTGPAFLAWWRMGNLQGWGGPLPQSWIDQQAELQ 97 (333)
T ss_dssp HHHHHHHHHHHHHTT--EEE--TTHHHHHHHHHGGGT--HHHHHHHS--TT-HHHHHTTS--STT----TTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCchhhhhhHHHHHHHHHHHHcCCCHHHHHHHcCCHHHHHHHHhCCcccCCCCCCHHHHHHHHHHH
Confidence 67899999999999999542222 233333221 0012222 2223455
Q ss_pred HHHHHHHHHCCCeEEEEcCCCCCcHhHHHhh--------CCC--------CChhhHHHHHHHHHHHH----HHhCCcCcE
Q 016924 64 NNLINELISNGLTPFVTLFHWDTPQALEDEY--------GGF--------LSPKIVKDFGDYADLCF----KEFGDRVKH 123 (380)
Q Consensus 64 ~~~i~~l~~~gi~p~~tL~h~~~P~~l~~~~--------ggw--------~~~~~~~~f~~ya~~~~----~~~~~~v~~ 123 (380)
+++++.+++-||+|++--+-=-.|..+.++| |.| ++| .-+.|.+.++... +.|| .-.+
T Consensus 98 ~kIl~RmreLGm~PVLPaF~G~VP~~~~~~~P~a~i~~~~~W~~f~~~~~L~P-~dplF~~i~~~F~~~q~~~yG-~~~~ 175 (333)
T PF05089_consen 98 KKILDRMRELGMTPVLPAFAGHVPRAFKRKYPNANITRQGNWNGFCRPYFLDP-TDPLFAEIAKLFYEEQIKLYG-TDHI 175 (333)
T ss_dssp HHHHHHHHHHT-EEEEE--S-EE-TTHHHHSTT--EE---EETTEE--EEE-S-S--HHHHHHHHHHHHHHHHH----SE
T ss_pred HHHHHHHHHcCCcccCCCcCCCCChHHHhcCCCCEEeeCCCcCCCCCCceeCC-CCchHHHHHHHHHHHHHHhcC-CCce
Confidence 7899999999999999876555788888776 223 333 2366777666555 5688 4556
Q ss_pred EE--ecCCC
Q 016924 124 WI--TLNEP 130 (380)
Q Consensus 124 w~--t~NEp 130 (380)
+. +|||-
T Consensus 176 Y~~D~FnE~ 184 (333)
T PF05089_consen 176 YAADPFNEG 184 (333)
T ss_dssp EE--TTTTS
T ss_pred eCCCccCCC
Confidence 63 88883
No 93
>PLN02447 1,4-alpha-glucan-branching enzyme
Probab=56.59 E-value=25 Score=38.34 Aligned_cols=60 Identities=13% Similarity=0.190 Sum_probs=36.9
Q ss_pred HHHHHHHcCCCEEEeccccccc-------cccCCCCCCccchHHHHHHHHHHHHHHCCCeEEEEcCC
Q 016924 24 DIALVKQVGFDSIRFSISWSRI-------LPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFH 83 (380)
Q Consensus 24 Di~l~~~lG~~~~R~si~W~ri-------~p~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~~tL~h 83 (380)
-+..+|+||++++=+.=-...- .|.....-.......+-++++|++|.++||++|+.+-+
T Consensus 256 ~L~ylk~LG~t~I~LmPi~e~~~~~~wGY~~~~~fa~~~~~Gtp~dlk~LVd~aH~~GI~VilDvV~ 322 (758)
T PLN02447 256 VLPRIKALGYNAVQLMAIQEHAYYGSFGYHVTNFFAVSSRSGTPEDLKYLIDKAHSLGLRVLMDVVH 322 (758)
T ss_pred HHHHHHHcCCCEEEECCccccCCCCCCCcCcccCcccccccCCHHHHHHHHHHHHHCCCEEEEEecc
Confidence 3899999999999776322111 01000000001111345899999999999999998653
No 94
>PRK03705 glycogen debranching enzyme; Provisional
Probab=56.58 E-value=28 Score=37.50 Aligned_cols=55 Identities=18% Similarity=0.385 Sum_probs=37.1
Q ss_pred HHHHHHcCCCEEEecc--c---------------c-------ccccccCCCCCCccchHHHHHHHHHHHHHHCCCeEEEE
Q 016924 25 IALVKQVGFDSIRFSI--S---------------W-------SRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVT 80 (380)
Q Consensus 25 i~l~~~lG~~~~R~si--~---------------W-------~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~~t 80 (380)
|+-+|+||++++=+.= + | -.+.|.= |.-....++=+++||++|.++||++|+.
T Consensus 185 LdYLk~LGvt~I~L~Pv~~~~~~~~~~~~g~~~ywGYd~~~yfa~d~~y---gt~~~~~~~efk~LV~~~H~~GI~VIlD 261 (658)
T PRK03705 185 IAYLKQLGITALELLPVAQFASEPRLQRMGLSNYWGYNPLAMFALDPAY---ASGPETALDEFRDAVKALHKAGIEVILD 261 (658)
T ss_pred hHHHHHcCCCEEEecCcccCCCcccccccccccccCccccccccccccc---CCCCcchHHHHHHHHHHHHHCCCEEEEE
Confidence 8899999999987641 1 1 1122221 2211134567999999999999999998
Q ss_pred cC
Q 016924 81 LF 82 (380)
Q Consensus 81 L~ 82 (380)
+-
T Consensus 262 vV 263 (658)
T PRK03705 262 VV 263 (658)
T ss_pred Ec
Confidence 53
No 95
>cd06600 GH31_MGAM-like This family includes the following closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), lysosomal acid alpha-glucosidase (GAA), neutral alpha-glucosidase C (GANC), the alpha subunit of neutral alpha-glucosidase AB (GANAB), and alpha-glucosidase II. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal do
Probab=56.02 E-value=82 Score=30.47 Aligned_cols=106 Identities=16% Similarity=0.175 Sum_probs=65.1
Q ss_pred HHHHHHHHcCCC--EEEeccccccccccCCCCCCccchHHHHHHHHHHHHHHCCCeEEEEcCCCC-----CcHhHHHh--
Q 016924 23 EDIALVKQVGFD--SIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFHWD-----TPQALEDE-- 93 (380)
Q Consensus 23 eDi~l~~~lG~~--~~R~si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~~tL~h~~-----~P~~l~~~-- 93 (380)
+-++.+++.++. ++=+.+.|..- .+ .-.+|.+...--.++|+.|+++|+++++.+.-+- .|...+..
T Consensus 28 ~~~~~~~~~~iP~d~i~lD~~~~~~--~~--~f~~d~~~FPdp~~~i~~l~~~g~k~~~~~~P~i~~~~~~~~~~~~~~~ 103 (317)
T cd06600 28 EVVDIMQKEGFPYDVVFLDIHYMDS--YR--LFTWDPYRFPEPKKLIDELHKRNVKLVTIVDPGIRVDQNYSPFLSGMDK 103 (317)
T ss_pred HHHHHHHHcCCCcceEEEChhhhCC--CC--ceeechhcCCCHHHHHHHHHHCCCEEEEEeeccccCCCCChHHHHHHHC
Confidence 335666766665 55556666431 11 2345555455567899999999999988765331 12221110
Q ss_pred ----------------------hCCCCChhhHHHHHHHHHHHHHHhCCcCcEEEecCCCccc
Q 016924 94 ----------------------YGGFLSPKIVKDFGDYADLCFKEFGDRVKHWITLNEPETV 133 (380)
Q Consensus 94 ----------------------~ggw~~~~~~~~f~~ya~~~~~~~~~~v~~w~t~NEp~~~ 133 (380)
+--|.||+..+.|.+..+.+....|- .-+|+=+|||..+
T Consensus 104 ~~~v~~~~g~~~~~~~w~G~~~~~Dftnp~a~~ww~~~~~~~~~~~gv-dg~w~D~~Ep~~~ 164 (317)
T cd06600 104 GKFCEIESGELFVGKMWPGTTVYPDFTNPDTREWWAGLFSEWLNSQGV-DGIWLDMNEPSDF 164 (317)
T ss_pred CEEEECCCCCeEEEeecCCCccccCCCChHHHHHHHHHHHHHhhcCCC-ceEEeeCCCCccH
Confidence 01257899999998887776554442 3477899999653
No 96
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=55.93 E-value=43 Score=34.47 Aligned_cols=56 Identities=20% Similarity=0.242 Sum_probs=40.5
Q ss_pred cccCcHHH-----HHHHHHcCCCEEEeccccccccccCCCCCCccchHHHHHHHHHHHHHHCCCeEEEEcCCCCCc
Q 016924 17 FYFRYKED-----IALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFHWDTP 87 (380)
Q Consensus 17 ~y~~~~eD-----i~l~~~lG~~~~R~si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~~tL~h~~~P 87 (380)
-|..|.+| ++++++.|++.+|+.-.... ++-....|+.+++.|..+.+++.+=+.|
T Consensus 98 gy~~ypddvv~~fv~~a~~~Gidi~Rifd~lnd---------------~~n~~~ai~~ak~~G~~~~~~i~yt~sp 158 (468)
T PRK12581 98 GYRHYADDIVDKFISLSAQNGIDVFRIFDALND---------------PRNIQQALRAVKKTGKEAQLCIAYTTSP 158 (468)
T ss_pred CccCCcchHHHHHHHHHHHCCCCEEEEcccCCC---------------HHHHHHHHHHHHHcCCEEEEEEEEEeCC
Confidence 36778889 89999999999998753221 2335667777788888777777765555
No 97
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=55.87 E-value=32 Score=32.57 Aligned_cols=55 Identities=13% Similarity=0.090 Sum_probs=40.2
Q ss_pred cHHHHHHHHHcCCCEEEecccccc--ccccCCCCCCccchHHHHHHHHHHHHHHCCCeEEEEc
Q 016924 21 YKEDIALVKQVGFDSIRFSISWSR--ILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTL 81 (380)
Q Consensus 21 ~~eDi~l~~~lG~~~~R~si~W~r--i~p~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~~tL 81 (380)
-+|.+++||++|++.+-++++ .. +.+.- .+. ..++.+.+.++.++++||.+.+.+
T Consensus 122 ~~e~l~~Lk~aG~~~v~i~~E-~~~~~~~~i--~~~---~s~~~~~~ai~~l~~~Gi~v~~~~ 178 (296)
T TIGR00433 122 DPEQAKRLKDAGLDYYNHNLD-TSQEFYSNI--IST---HTYDDRVDTLENAKKAGLKVCSGG 178 (296)
T ss_pred CHHHHHHHHHcCCCEEEEccc-CCHHHHhhc--cCC---CCHHHHHHHHHHHHHcCCEEEEeE
Confidence 489999999999999999988 32 23321 122 234667889999999999866543
No 98
>PRK14705 glycogen branching enzyme; Provisional
Probab=55.78 E-value=66 Score=37.14 Aligned_cols=93 Identities=16% Similarity=0.256 Sum_probs=53.9
Q ss_pred HHHHHHcCCCEEEec-c-------ccccccccCCCCCCccchHHHHHHHHHHHHHHCCCeEEEEcC--CCCCcHhHHHhh
Q 016924 25 IALVKQVGFDSIRFS-I-------SWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLF--HWDTPQALEDEY 94 (380)
Q Consensus 25 i~l~~~lG~~~~R~s-i-------~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~~tL~--h~~~P~~l~~~~ 94 (380)
++-+|+||++++=+. | +|- -.|.+...=.......+=++.+|++|.++||.+|+.+- |+..=.|....+
T Consensus 772 ldYlk~LGvt~IeLmPv~e~p~~~swG-Y~~~~y~ap~~ryGt~~dfk~lVd~~H~~GI~VILD~V~nH~~~d~~~l~~f 850 (1224)
T PRK14705 772 VDYVKWLGFTHVEFMPVAEHPFGGSWG-YQVTSYFAPTSRFGHPDEFRFLVDSLHQAGIGVLLDWVPAHFPKDSWALAQF 850 (1224)
T ss_pred HHHHHHhCCCEEEECccccCCCCCCCC-CCccccCCcCcccCCHHHHHHHHHHHHHCCCEEEEEeccccCCcchhhhhhc
Confidence 688999999998665 2 341 11111000000111234489999999999999999854 552111111011
Q ss_pred ----------------CCC-------CChhhHHHHHHHHHHHHHHhC
Q 016924 95 ----------------GGF-------LSPKIVKDFGDYADLCFKEFG 118 (380)
Q Consensus 95 ----------------ggw-------~~~~~~~~f~~ya~~~~~~~~ 118 (380)
..| .++++.+.+.+=+..-+++|+
T Consensus 851 dg~~~y~~~d~~~g~~~~Wg~~~fn~~~~eVr~fli~~a~~Wl~eyh 897 (1224)
T PRK14705 851 DGQPLYEHADPALGEHPDWGTLIFDFGRTEVRNFLVANALYWLDEFH 897 (1224)
T ss_pred CCCcccccCCcccCCCCCCCCceecCCCHHHHHHHHHHHHHHHHHhC
Confidence 112 356677777777887788874
No 99
>PRK10785 maltodextrin glucosidase; Provisional
Probab=55.76 E-value=24 Score=37.49 Aligned_cols=60 Identities=13% Similarity=0.184 Sum_probs=38.1
Q ss_pred cHHHHHHHHHcCCCEEEeccccccccccCCCCC-----Ccc--chHHHHHHHHHHHHHHCCCeEEEEcC
Q 016924 21 YKEDIALVKQVGFDSIRFSISWSRILPHGNISG-----GVN--QQGVDFYNNLINELISNGLTPFVTLF 82 (380)
Q Consensus 21 ~~eDi~l~~~lG~~~~R~si~W~ri~p~~~~~g-----~~n--~~~~~~y~~~i~~l~~~gi~p~~tL~ 82 (380)
-.+-++-+|+|||+++=++=-... |...--. .+| ....+=++++|+++.++||++|+.+-
T Consensus 181 I~~kLdYL~~LGv~~I~L~Pif~s--~s~hgYd~~Dy~~iDp~~Gt~~df~~Lv~~aH~rGikVilD~V 247 (598)
T PRK10785 181 ISEKLPYLKKLGVTALYLNPIFTA--PSVHKYDTEDYRHVDPQLGGDAALLRLRHATQQRGMRLVLDGV 247 (598)
T ss_pred HHHHHHHHHHcCCCEEEeCCcccC--CCCCCcCcccccccCcccCCHHHHHHHHHHHHHCCCEEEEEEC
Confidence 344578899999999888732111 1110000 111 11235589999999999999999753
No 100
>KOG1065 consensus Maltase glucoamylase and related hydrolases, glycosyl hydrolase family 31 [Carbohydrate transport and metabolism]
Probab=55.67 E-value=63 Score=35.33 Aligned_cols=106 Identities=18% Similarity=0.291 Sum_probs=66.8
Q ss_pred HHHHHHHHcCCCEEEecccccccccc-CCCCCCccchHHHHHHHHHHHHHHCCCeEEEEcC---CCCCc-----------
Q 016924 23 EDIALVKQVGFDSIRFSISWSRILPH-GNISGGVNQQGVDFYNNLINELISNGLTPFVTLF---HWDTP----------- 87 (380)
Q Consensus 23 eDi~l~~~lG~~~~R~si~W~ri~p~-~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~~tL~---h~~~P----------- 87 (380)
+=++.++++|+. +++-|..|.=. +..+-.+|....-...++++.|.++|++.++.+. +-+..
T Consensus 315 dvv~~~~~agiP---ld~~~~DiDyMd~ykDFTvd~~~fp~~~~fv~~Lh~~G~kyvliidP~is~~~~y~~y~~g~~~~ 391 (805)
T KOG1065|consen 315 DVVENYRAAGIP---LDVIVIDIDYMDGYKDFTVDKVWFPDLKDFVDDLHARGFKYVLIIDPFISTNSSYGPYDRGVAKD 391 (805)
T ss_pred HHHHHHHHcCCC---cceeeeehhhhhcccceeeccccCcchHHHHHHHHhCCCeEEEEeCCccccCccchhhhhhhhhc
Confidence 346777888877 33445554321 1112467777777789999999999999999986 22222
Q ss_pred HhHHH----------hhCC------CCChhhHHHHHHHHHHHHHHhCCcCc---EEEecCCCccccc
Q 016924 88 QALED----------EYGG------FLSPKIVKDFGDYADLCFKEFGDRVK---HWITLNEPETVGE 135 (380)
Q Consensus 88 ~~l~~----------~~gg------w~~~~~~~~f~~ya~~~~~~~~~~v~---~w~t~NEp~~~~~ 135 (380)
.|..+ -..| ++|+.++++|. ..+++|.+.|. +|+-+|||..+..
T Consensus 392 v~I~~~~g~~~~lg~vwP~~~~fpDftnp~~~~Ww~----~~~~~fh~~vp~dg~wiDmnE~snf~~ 454 (805)
T KOG1065|consen 392 VLIKNREGSPKMLGEVWPGSTAFPDFTNPAVVEWWL----DELKRFHDEVPFDGFWIDMNEPSNFPS 454 (805)
T ss_pred eeeecccCchhhhcccCCCcccccccCCchHHHHHH----HHHHhhcccCCccceEEECCCcccCCC
Confidence 01111 0122 55666665554 34558888875 8999999987653
No 101
>PRK04161 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=55.54 E-value=66 Score=31.39 Aligned_cols=58 Identities=19% Similarity=0.440 Sum_probs=49.4
Q ss_pred HHHHHHHcCCCEEEeccccccccccCCCCCCccchHHHHHHHHHHHHHHCCCeEEEEcCCCCC
Q 016924 24 DIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFHWDT 86 (380)
Q Consensus 24 Di~l~~~lG~~~~R~si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~~tL~h~~~ 86 (380)
+.+.+|++|.+++.|=+-|. |++ +-.+|..-.++..++.++|+++||-=++-+.-+|.
T Consensus 112 s~~rike~GadavK~Llyy~---pD~--~~ein~~k~a~vervg~eC~a~dipf~lE~l~Yd~ 169 (329)
T PRK04161 112 SVKRLKEAGADAVKFLLYYD---VDG--DEEINDQKQAYIERIGSECTAEDIPFFLELLTYDE 169 (329)
T ss_pred hHHHHHHhCCCeEEEEEEEC---CCC--CHHHHHHHHHHHHHHHHHHHHCCCCeEEEEeccCC
Confidence 57899999999999998875 554 35688888999999999999999999998876653
No 102
>cd02874 GH18_CFLE_spore_hydrolase Cortical fragment-lytic enzyme (CFLE) is a peptidoglycan hydrolase involved in bacterial endospore germination. CFLE is expressed as an inactive preprotein (called SleB) in the forespore compartment of sporulating cells. SleB translocates across the forespore inner membrane and is deposited as a mature enzyme in the cortex layer of the spore. As part of a sensory mechanism capable of initiating germination, CFLE degrades a spore-specific peptidoglycan constituent called muramic-acid delta-lactam that comprises the outer cortex. CFLE has a C-terminal glycosyl hydrolase family 18 (GH18) catalytic domain as well as two N-terminal LysM peptidoglycan-binding domains. In addition to SleB, this family includes YaaH, YdhD, and YvbX from Bacillus subtilis.
Probab=55.41 E-value=58 Score=31.24 Aligned_cols=92 Identities=12% Similarity=0.188 Sum_probs=58.5
Q ss_pred cccCcHHH-HHHHHHcCCCEEEeccccccccccCCCCCCccchHHHHHHHHHHHHHHCCCeEEEEcCCCCC----cHhHH
Q 016924 17 FYFRYKED-IALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFHWDT----PQALE 91 (380)
Q Consensus 17 ~y~~~~eD-i~l~~~lG~~~~R~si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~~tL~h~~~----P~~l~ 91 (380)
||-.|.++ .+.+++.+-+.=-++..|-.|-|++...+.. ..++++.++++|+++++++..++- +.-+.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~lt~v~p~w~~~~~~g~~~~~~-------~~~~~~~a~~~~~kv~~~i~~~~~~~~~~~~~~ 79 (313)
T cd02874 7 YYTPRNGSDYESLRANAPYLTYIAPFWYGVDADGTLTGLP-------DERLIEAAKRRGVKPLLVITNLTNGNFDSELAH 79 (313)
T ss_pred EEecCCCchHHHHHHhcCCCCEEEEEEEEEcCCCCCCCCC-------CHHHHHHHHHCCCeEEEEEecCCCCCCCHHHHH
Confidence 44444443 6777777777777888999998876322222 368999999999999999976541 11111
Q ss_pred HhhCCCCChhhHHHHHHHHHHHHHHhC
Q 016924 92 DEYGGFLSPKIVKDFGDYADLCFKEFG 118 (380)
Q Consensus 92 ~~~ggw~~~~~~~~f~~ya~~~~~~~~ 118 (380)
. --.+++..+.|++=+-.+++++|
T Consensus 80 ~---~l~~~~~r~~fi~~iv~~l~~~~ 103 (313)
T cd02874 80 A---VLSNPEARQRLINNILALAKKYG 103 (313)
T ss_pred H---HhcCHHHHHHHHHHHHHHHHHhC
Confidence 1 02355566667666666666664
No 103
>PRK12399 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=55.40 E-value=65 Score=31.36 Aligned_cols=57 Identities=16% Similarity=0.398 Sum_probs=48.5
Q ss_pred HHHHHHcCCCEEEeccccccccccCCCCCCccchHHHHHHHHHHHHHHCCCeEEEEcCCCCC
Q 016924 25 IALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFHWDT 86 (380)
Q Consensus 25 i~l~~~lG~~~~R~si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~~tL~h~~~ 86 (380)
.+.+|++|.+++.|=+-|. |+. +..+|..-.++..++.++|+++||-=++-+.-+|.
T Consensus 111 ~~rike~GadavK~Llyy~---pD~--~~~in~~k~a~vervg~eC~a~dipf~lE~ltY~~ 167 (324)
T PRK12399 111 AKRIKEEGADAVKFLLYYD---VDE--PDEINEQKKAYIERIGSECVAEDIPFFLEILTYDE 167 (324)
T ss_pred HHHHHHhCCCeEEEEEEEC---CCC--CHHHHHHHHHHHHHHHHHHHHCCCCeEEEEeeccC
Confidence 7889999999999998875 555 35688888999999999999999998887765553
No 104
>cd06565 GH20_GcnA-like Glycosyl hydrolase family 20 (GH20) catalytic domain of N-acetyl-beta-D-glucosaminidase (GcnA, also known as BhsA) and related proteins. GcnA is an exoglucosidase which cleaves N-acetyl-beta-D-galactosamine (NAG) and N-acetyl-beta-D-galactosamine residues from 4-methylumbelliferylated (4MU) substrates, as well as cleaving NAG from chito-oligosaccharides (i.e. NAG polymers). In contrast, sulfated forms of the substrate are unable to be cleaved and act instead as mild competitive inhibitors. Additionally, the enzyme is known to be poisoned by several first-row transition metals as well as by mercury. GcnA forms a homodimer with subunits comprised of three domains, an N-terminal zincin-like domain, this central catalytic GH20 domain, and a C-terminal alpha helical domain. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=54.88 E-value=62 Score=31.13 Aligned_cols=72 Identities=14% Similarity=0.168 Sum_probs=49.4
Q ss_pred cccCCcccC---cHHHHHHHHHcCCCEEEeccc----cccccccCCC-CCCccchHHHHHHHHHHHHHHCCCeEEEEcCC
Q 016924 12 DVADNFYFR---YKEDIALVKQVGFDSIRFSIS----WSRILPHGNI-SGGVNQQGVDFYNNLINELISNGLTPFVTLFH 83 (380)
Q Consensus 12 ~~a~~~y~~---~~eDi~l~~~lG~~~~R~si~----W~ri~p~~~~-~g~~n~~~~~~y~~~i~~l~~~gi~p~~tL~h 83 (380)
|+|-+++-. .++=|++|+.+|+|.+-+=++ ++. .|.-.. .|.+.. +=++++++.++++||+++..+
T Consensus 7 D~~R~~~~~~~~lk~~id~ma~~k~N~l~lhl~D~f~~~~-~p~~~~~~~~yT~---~ei~ei~~yA~~~gI~vIPei-- 80 (301)
T cd06565 7 DLKRNAVPKVSYLKKLLRLLALLGANGLLLYYEDTFPYEG-EPEVGRMRGAYTK---EEIREIDDYAAELGIEVIPLI-- 80 (301)
T ss_pred ecCCCCCCCHHHHHHHHHHHHHcCCCEEEEEEecceecCC-CcccccCCCCcCH---HHHHHHHHHHHHcCCEEEecC--
Confidence 566655544 677799999999998877442 221 122110 256666 447999999999999999876
Q ss_pred CCCcHhH
Q 016924 84 WDTPQAL 90 (380)
Q Consensus 84 ~~~P~~l 90 (380)
|+|..+
T Consensus 81 -d~pGH~ 86 (301)
T cd06565 81 -QTLGHL 86 (301)
T ss_pred -CCHHHH
Confidence 666654
No 105
>cd06603 GH31_GANC_GANAB_alpha This family includes the closely related glycosyl hydrolase family 31 (GH31) isozymes, neutral alpha-glucosidase C (GANC) and the alpha subunit of heterodimeric neutral alpha-glucosidase AB (GANAB). Initially distinguished on the basis of differences in electrophoretic mobility in starch gel, GANC and GANAB have been shown to have other differences, including those of substrate specificity. GANC and GANAB are key enzymes in glycogen metabolism that hydrolyze terminal, non-reducing 1,4-linked alpha-D-glucose residues from glycogen in the endoplasmic reticulum. The GANC/GANAB family includes the alpha-glucosidase II (ModA) from Dictyostelium discoideum as well as the alpha-glucosidase II (GLS2, or ROT2 - Reversal of TOR2 lethality protein 2) from Saccharomyces cerevisiae.
Probab=54.63 E-value=70 Score=31.26 Aligned_cols=110 Identities=15% Similarity=0.085 Sum_probs=67.3
Q ss_pred cHHHHHHHHHcCCC--EEEeccccccccccCCCCCCccchHHHHHHHHHHHHHHCCCeEEEEcCCCCC-----cHhHHHh
Q 016924 21 YKEDIALVKQVGFD--SIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFHWDT-----PQALEDE 93 (380)
Q Consensus 21 ~~eDi~l~~~lG~~--~~R~si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~~tL~h~~~-----P~~l~~~ 93 (380)
..+-++.+++.|+. ++=+.+.|.. .. ..-.+|.+-+---.++|+.|+++|+++++.++-+-. |..-+..
T Consensus 26 v~~~~~~~~~~~iP~d~i~lD~~~~~---~~-~~f~~d~~~FPdp~~mi~~L~~~G~k~~~~~~P~v~~~~~~~~y~e~~ 101 (339)
T cd06603 26 VKEVDAGFDEHDIPYDVIWLDIEHTD---GK-RYFTWDKKKFPDPEKMQEKLASKGRKLVTIVDPHIKRDDGYYVYKEAK 101 (339)
T ss_pred HHHHHHHHHHcCCCceEEEEChHHhC---CC-CceEeCcccCCCHHHHHHHHHHCCCEEEEEecCceecCCCCHHHHHHH
Confidence 34446777777766 4444444432 11 012344433333578999999999999998864422 2221110
Q ss_pred -------------h--------C---CCCChhhHHHHHHHHHHHHHHhCCc-CcEEEecCCCcccc
Q 016924 94 -------------Y--------G---GFLSPKIVKDFGDYADLCFKEFGDR-VKHWITLNEPETVG 134 (380)
Q Consensus 94 -------------~--------g---gw~~~~~~~~f~~ya~~~~~~~~~~-v~~w~t~NEp~~~~ 134 (380)
| + -+.||+..+.|.+..+.+....+.. +-+|+=+|||.++.
T Consensus 102 ~~g~~vk~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~~~~~~g~~g~w~D~~Ep~~f~ 167 (339)
T cd06603 102 DKGYLVKNSDGGDFEGWCWPGSSSWPDFLNPEVRDWWASLFSYDKYKGSTENLYIWNDMNEPSVFN 167 (339)
T ss_pred HCCeEEECCCCCEEEEEECCCCcCCccCCChhHHHHHHHHHHHHhhcccCCCceEEeccCCccccC
Confidence 0 1 1568999999998888776543322 46889999998754
No 106
>cd06598 GH31_transferase_CtsZ CtsZ (cyclic tetrasaccharide-synthesizing enzyme Z) is a bacterial 6-alpha-glucosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsY. CtsZ and CtsY both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=54.61 E-value=99 Score=29.89 Aligned_cols=109 Identities=16% Similarity=0.193 Sum_probs=65.8
Q ss_pred HHHHHHHHHcCCC--EEEeccccccccccCCC--CCCccchHHHHHHHHHHHHHHCCCeEEEEcCCC---CCcHhHH--H
Q 016924 22 KEDIALVKQVGFD--SIRFSISWSRILPHGNI--SGGVNQQGVDFYNNLINELISNGLTPFVTLFHW---DTPQALE--D 92 (380)
Q Consensus 22 ~eDi~l~~~lG~~--~~R~si~W~ri~p~~~~--~g~~n~~~~~~y~~~i~~l~~~gi~p~~tL~h~---~~P~~l~--~ 92 (380)
.+-++.+++.|+. ++=+.+.|......... +-.+|.+-+---.++|+.|+++|+++++.+.-+ +.|..-+ +
T Consensus 27 ~~~~~~~~~~~iP~d~i~lD~~w~~~~~~~~~~~~f~wd~~~FPdp~~mi~~L~~~G~k~~~~v~P~v~~~~~~y~e~~~ 106 (317)
T cd06598 27 DDTIKTLREKDFPLDAAILDLYWFGKDIDKGHMGNLDWDRKAFPDPAGMIADLAKKGVKTIVITEPFVLKNSKNWGEAVK 106 (317)
T ss_pred HHHHHHHHHhCCCceEEEEechhhcCcccCCceeeeEeccccCCCHHHHHHHHHHcCCcEEEEEcCcccCCchhHHHHHh
Confidence 3445677777764 66666678543321100 123444444445899999999999999988644 3343211 1
Q ss_pred h-h-------------------C---CCCChhhHHHHHHHHHHHHHHhCCcC-cEEEecCCCccc
Q 016924 93 E-Y-------------------G---GFLSPKIVKDFGDYADLCFKEFGDRV-KHWITLNEPETV 133 (380)
Q Consensus 93 ~-~-------------------g---gw~~~~~~~~f~~ya~~~~~~~~~~v-~~w~t~NEp~~~ 133 (380)
+ | + -++||+..+.|.+..+.+ ... -| -+|.=+|||..+
T Consensus 107 ~g~l~~~~~~~~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~-~~~--Gvdg~w~D~~Ep~~~ 168 (317)
T cd06598 107 AGALLKKDQGGVPTLFDFWFGNTGLIDWFDPAAQAWFHDNYKKL-IDQ--GVTGWWGDLGEPEVH 168 (317)
T ss_pred CCCEEEECCCCCEeeeeccCCCccccCCCCHHHHHHHHHHHHHh-hhC--CccEEEecCCCcccc
Confidence 0 0 1 145888888888877665 223 34 467899999754
No 107
>PRK12568 glycogen branching enzyme; Provisional
Probab=54.53 E-value=20 Score=38.92 Aligned_cols=97 Identities=19% Similarity=0.303 Sum_probs=55.2
Q ss_pred cHHH-HHHHHHcCCCEEEec-c-------ccccccccCCCCCCccchHHHHHHHHHHHHHHCCCeEEEEcC--CCCC---
Q 016924 21 YKED-IALVKQVGFDSIRFS-I-------SWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLF--HWDT--- 86 (380)
Q Consensus 21 ~~eD-i~l~~~lG~~~~R~s-i-------~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~~tL~--h~~~--- 86 (380)
..+. |+-+|+||++++=+. | +|- -.|.+...-.......+-++.+|++|.++||++|+.+. |+.-
T Consensus 271 la~~ll~ylk~LGvt~I~LmPi~e~~~~~~wG-Y~~~~~~a~~~~~G~~~dfk~lV~~~H~~Gi~VIlD~V~nH~~~d~~ 349 (730)
T PRK12568 271 LAEQLIPYVQQLGFTHIELLPITEHPFGGSWG-YQPLGLYAPTARHGSPDGFAQFVDACHRAGIGVILDWVSAHFPDDAH 349 (730)
T ss_pred HHHHHHHHHHHcCCCEEEECccccCCCCCCCC-CCCCcCCccCcccCCHHHHHHHHHHHHHCCCEEEEEeccccCCcccc
Confidence 3344 588999999998665 2 342 11111000000112235589999999999999999854 4321
Q ss_pred -------cH-hHH-H-h---hCCC-------CChhhHHHHHHHHHHHHHHhC
Q 016924 87 -------PQ-ALE-D-E---YGGF-------LSPKIVKDFGDYADLCFKEFG 118 (380)
Q Consensus 87 -------P~-~l~-~-~---~ggw-------~~~~~~~~f~~ya~~~~~~~~ 118 (380)
+. +-. + + +..| .++++.+.+.+=+..-+++|+
T Consensus 350 ~l~~fdg~~~Ye~~d~~~g~~~~W~~~~~N~~~peVr~~li~~a~~Wl~eyh 401 (730)
T PRK12568 350 GLAQFDGAALYEHADPREGMHRDWNTLIYNYGRPEVTAYLLGSALEWIEHYH 401 (730)
T ss_pred ccccCCCccccccCCCcCCccCCCCCeecccCCHHHHHHHHHHHHHHHHHhC
Confidence 10 100 0 0 1123 356777777777777777774
No 108
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=54.52 E-value=55 Score=33.53 Aligned_cols=75 Identities=16% Similarity=0.229 Sum_probs=48.0
Q ss_pred HHHHHHHHHcCCCEEEeccc-cc-cccccCCCCCCccchHHHHHHHHHHHHHHCCCeEEEEcCCCCCcHhHHHhhCCCCC
Q 016924 22 KEDIALVKQVGFDSIRFSIS-WS-RILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFHWDTPQALEDEYGGFLS 99 (380)
Q Consensus 22 ~eDi~l~~~lG~~~~R~si~-W~-ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~~tL~h~~~P~~l~~~~ggw~~ 99 (380)
+|.+++|+++|++.+-++++ -+ ++.-.- .-..+ ++.+.+.+..++++||.+.+++- +++| ..+
T Consensus 287 ~e~l~~l~~aG~~~v~iGiES~s~~~L~~~--~K~~~---~~~~~~~i~~~~~~Gi~v~~~~I-iGlP---------get 351 (472)
T TIGR03471 287 YETLKVMKENGLRLLLVGYESGDQQILKNI--KKGLT---VEIARRFTRDCHKLGIKVHGTFI-LGLP---------GET 351 (472)
T ss_pred HHHHHHHHHcCCCEEEEcCCCCCHHHHHHh--cCCCC---HHHHHHHHHHHHHCCCeEEEEEE-EeCC---------CCC
Confidence 67789999999999988884 21 222111 01122 35678999999999999887764 3444 234
Q ss_pred hhhHHHHHHHHH
Q 016924 100 PKIVKDFGDYAD 111 (380)
Q Consensus 100 ~~~~~~f~~ya~ 111 (380)
++.+..-.+|+.
T Consensus 352 ~e~~~~ti~~~~ 363 (472)
T TIGR03471 352 RETIRKTIDFAK 363 (472)
T ss_pred HHHHHHHHHHHH
Confidence 444455555544
No 109
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=54.40 E-value=97 Score=29.81 Aligned_cols=32 Identities=19% Similarity=0.245 Sum_probs=29.5
Q ss_pred CCccchHHHHHHHHHHHHHHCCCeEEEEcCCC
Q 016924 53 GGVNQQGVDFYNNLINELISNGLTPFVTLFHW 84 (380)
Q Consensus 53 g~~n~~~~~~y~~~i~~l~~~gi~p~~tL~h~ 84 (380)
+-++.+-++.++++++.++++|-+.++=|.|-
T Consensus 69 ~~~~~~~~~~~~~~~~~vh~~g~~~~~Ql~h~ 100 (327)
T cd02803 69 GIYDDEQIPGLRKLTEAVHAHGAKIFAQLAHA 100 (327)
T ss_pred CcCCHHHHHHHHHHHHHHHhCCCHhhHHhhCC
Confidence 67888999999999999999999999999994
No 110
>PF04646 DUF604: Protein of unknown function, DUF604; InterPro: IPR006740 This family includes a conserved region found in several uncharacterised plant proteins.
Probab=54.38 E-value=5.7 Score=37.14 Aligned_cols=77 Identities=14% Similarity=0.164 Sum_probs=46.7
Q ss_pred HHHHHHHHCCCeEEEEcCCCCCcHhHHHhhCCCCChhhHHHHHHHHHHHHHHhCCcCcEEEecCCCccccccccccCccC
Q 016924 65 NLINELISNGLTPFVTLFHWDTPQALEDEYGGFLSPKIVKDFGDYADLCFKEFGDRVKHWITLNEPETVGECGYAKGTKA 144 (380)
Q Consensus 65 ~~i~~l~~~gi~p~~tL~h~~~P~~l~~~~ggw~~~~~~~~f~~ya~~~~~~~~~~v~~w~t~NEp~~~~~~gy~~g~~~ 144 (380)
+..-.+.++.+.|+++||||+.= ..-+.+....+.+..+.+=|+.--.++..+-..|---....+.+-+||..-.++
T Consensus 72 d~~G~~~a~~~~pl~SlHH~~~~---~PifP~~~~~~al~~L~~a~~~d~~~~lqqsicyd~~~~wsvsVSwGYsVqvy~ 148 (255)
T PF04646_consen 72 DPSGFLEAHPLAPLVSLHHWDSV---DPIFPNMSRLQALRHLLKAAKVDPARILQQSICYDRRRNWSVSVSWGYSVQVYR 148 (255)
T ss_pred CcceeeecCCCCceeeeeehhhc---cccCCCCCHHHHHHHHHHHHhhChHhhhheeeeccCceEEEEEEEccEEEEEEC
Confidence 33444556679999999999852 223566666667777777555444444333223333344455566899887773
No 111
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=54.28 E-value=43 Score=33.39 Aligned_cols=59 Identities=17% Similarity=0.142 Sum_probs=47.0
Q ss_pred HHHHHHHHHcCCCEEEeccccccccccCCCCCCccchHHHHHHHHHHHHHHCCCeEEEEc
Q 016924 22 KEDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTL 81 (380)
Q Consensus 22 ~eDi~l~~~lG~~~~R~si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~~tL 81 (380)
++|++.+.+.|++.+|++++-|.+.-... -+.--.+.++-..+.+..+++.|+++.++.
T Consensus 78 ~~di~~a~~~g~~~i~i~~~~Sd~h~~~~-~~~s~~~~l~~~~~~v~~a~~~G~~v~~~~ 136 (378)
T PRK11858 78 KSDIDASIDCGVDAVHIFIATSDIHIKHK-LKKTREEVLERMVEAVEYAKDHGLYVSFSA 136 (378)
T ss_pred HHHHHHHHhCCcCEEEEEEcCCHHHHHHH-hCCCHHHHHHHHHHHHHHHHHCCCeEEEEe
Confidence 88999999999999999998776642211 133345778889999999999999998874
No 112
>PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=54.26 E-value=57 Score=32.12 Aligned_cols=52 Identities=17% Similarity=0.370 Sum_probs=43.6
Q ss_pred HHHHHHcCCCEEEeccccccccccCCCCCCccchHHHHHHHHHHHHHHCCCeEEEEc
Q 016924 25 IALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTL 81 (380)
Q Consensus 25 i~l~~~lG~~~~R~si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~~tL 81 (380)
++.++++|.+++-+-+-|. |+. ...+|..-+++..++.++|.+.||..++-+
T Consensus 112 ve~a~~~GAdAVk~lv~~~---~d~--~~~~~~~~~~~l~rv~~ec~~~giPlllE~ 163 (340)
T PRK12858 112 VRRIKEAGADAVKLLLYYR---PDE--DDAINDRKHAFVERVGAECRANDIPFFLEP 163 (340)
T ss_pred HHHHHHcCCCEEEEEEEeC---CCc--chHHHHHHHHHHHHHHHHHHHcCCceEEEE
Confidence 6779999999999999886 443 134578888999999999999999988854
No 113
>PRK06294 coproporphyrinogen III oxidase; Provisional
Probab=54.18 E-value=49 Score=32.79 Aligned_cols=95 Identities=14% Similarity=0.176 Sum_probs=60.3
Q ss_pred cHHHHHHHHHcCCCEEEeccc-c-ccccccCCCCCCccchHHHHHHHHHHHHHHCCCe-EEEEcCCCCCcHhHHHhhCCC
Q 016924 21 YKEDIALVKQVGFDSIRFSIS-W-SRILPHGNISGGVNQQGVDFYNNLINELISNGLT-PFVTLFHWDTPQALEDEYGGF 97 (380)
Q Consensus 21 ~~eDi~l~~~lG~~~~R~si~-W-~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~gi~-p~~tL~h~~~P~~l~~~~ggw 97 (380)
-++.++.|+++|+|.+.+++. - .++.-.- |... ..+-..+.|+.+++.|+. +-++|- +++|.
T Consensus 102 ~~~~l~~l~~~G~nrislGvQS~~~~~L~~l---~R~~--~~~~~~~ai~~~~~~g~~~v~~Dli-~GlPg--------- 166 (370)
T PRK06294 102 SESYIRALALTGINRISIGVQTFDDPLLKLL---GRTH--SSSKAIDAVQECSEHGFSNLSIDLI-YGLPT--------- 166 (370)
T ss_pred CHHHHHHHHHCCCCEEEEccccCCHHHHHHc---CCCC--CHHHHHHHHHHHHHcCCCeEEEEee-cCCCC---------
Confidence 478899999999997766663 1 1111111 2111 124456788899999997 455553 45552
Q ss_pred CChhhHHHHHHHHHHHHHHhCCcCcEEEecCCCccc
Q 016924 98 LSPKIVKDFGDYADLCFKEFGDRVKHWITLNEPETV 133 (380)
Q Consensus 98 ~~~~~~~~f~~ya~~~~~~~~~~v~~w~t~NEp~~~ 133 (380)
++.+.|.+=.+.+.+-=-++|..+...=||...
T Consensus 167 ---qt~~~~~~~l~~~~~l~~~~is~y~l~~~~gT~ 199 (370)
T PRK06294 167 ---QSLSDFIVDLHQAITLPITHISLYNLTIDPHTS 199 (370)
T ss_pred ---CCHHHHHHHHHHHHccCCCeEEEeeeEecCCCh
Confidence 245667777777665444778888887888753
No 114
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=53.80 E-value=41 Score=33.31 Aligned_cols=60 Identities=18% Similarity=0.152 Sum_probs=46.4
Q ss_pred cHHHHHHHHHcCCCEEEeccccccccccCCCCCCccchHHHHHHHHHHHHHHCCCeEEEEc
Q 016924 21 YKEDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTL 81 (380)
Q Consensus 21 ~~eDi~l~~~lG~~~~R~si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~~tL 81 (380)
-.+|++.+.+.|++.+|+.++-|.+.-.... +.-..+.++...+.|+.++++|+++.+++
T Consensus 74 ~~~di~~a~~~g~~~i~i~~~~Sd~~~~~~~-~~s~~e~l~~~~~~i~~ak~~g~~v~~~~ 133 (365)
T TIGR02660 74 RDADIEAAARCGVDAVHISIPVSDLQIEAKL-RKDRAWVLERLARLVSFARDRGLFVSVGG 133 (365)
T ss_pred CHHHHHHHHcCCcCEEEEEEccCHHHHHHHh-CcCHHHHHHHHHHHHHHHHhCCCEEEEee
Confidence 4899999999999999999987765322110 22335678889999999999999988765
No 115
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=53.76 E-value=24 Score=37.55 Aligned_cols=95 Identities=14% Similarity=0.158 Sum_probs=56.4
Q ss_pred HHHH-HHHHHcCCCEEEec-cccccc------cccCCCCCCc--cchHHHHHHHHHHHHHHCCCeEEEEcC--CCCC---
Q 016924 22 KEDI-ALVKQVGFDSIRFS-ISWSRI------LPHGNISGGV--NQQGVDFYNNLINELISNGLTPFVTLF--HWDT--- 86 (380)
Q Consensus 22 ~eDi-~l~~~lG~~~~R~s-i~W~ri------~p~~~~~g~~--n~~~~~~y~~~i~~l~~~gi~p~~tL~--h~~~--- 86 (380)
.+.+ +-+|+||++++=+. |....- .|... -.+ .....+=++++|++|.++||++|+.+- |...
T Consensus 159 ~~~l~dyl~~LGvt~i~L~Pi~e~~~~~~wGY~~~~y--~~~~~~~Gt~~dlk~lV~~~H~~Gi~VilD~V~NH~~~~~~ 236 (613)
T TIGR01515 159 ADQLIPYVKELGFTHIELLPVAEHPFDGSWGYQVTGY--YAPTSRFGTPDDFMYFVDACHQAGIGVILDWVPGHFPKDDH 236 (613)
T ss_pred HHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccC--cccccccCCHHHHHHHHHHHHHCCCEEEEEecccCcCCccc
Confidence 4454 88899999999884 433210 01100 001 111234589999999999999999854 5421
Q ss_pred --------cHhHHH-----hhCCC-------CChhhHHHHHHHHHHHHHHhC
Q 016924 87 --------PQALED-----EYGGF-------LSPKIVKDFGDYADLCFKEFG 118 (380)
Q Consensus 87 --------P~~l~~-----~~ggw-------~~~~~~~~f~~ya~~~~~~~~ 118 (380)
|.+... .+..| .++++.+.+.+-++..+++|+
T Consensus 237 ~~~~~~~~~~y~~~~~~~~~~~~w~~~~~~~~~~~Vr~~l~~~~~~W~~ey~ 288 (613)
T TIGR01515 237 GLAEFDGTPLYEHKDPRDGEHWDWGTLIFDYGRPEVRNFLVANALYWAEFYH 288 (613)
T ss_pred hhhccCCCcceeccCCccCcCCCCCCceecCCCHHHHHHHHHHHHHHHHHhC
Confidence 111110 00112 357788888888888888875
No 116
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=53.07 E-value=86 Score=29.68 Aligned_cols=68 Identities=10% Similarity=-0.021 Sum_probs=48.2
Q ss_pred cHHHHHHHHHcCCCEEEeccccccccccCCCCCCccchHHHHHHHHHHHHHHCCCeEEEEcCCCCCcHhHHHhhCCCCCh
Q 016924 21 YKEDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFHWDTPQALEDEYGGFLSP 100 (380)
Q Consensus 21 ~~eDi~l~~~lG~~~~R~si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~~tL~h~~~P~~l~~~~ggw~~~ 100 (380)
-++|+++..+.|++.+|+++..+. ++...+.++.+++.|+++.+++.--+ + ++
T Consensus 93 ~~~di~~~~~~g~~~iri~~~~~~---------------~~~~~~~i~~ak~~G~~v~~~i~~~~---------~---~~ 145 (275)
T cd07937 93 VELFVEKAAKNGIDIFRIFDALND---------------VRNLEVAIKAVKKAGKHVEGAICYTG---------S---PV 145 (275)
T ss_pred HHHHHHHHHHcCCCEEEEeecCCh---------------HHHHHHHHHHHHHCCCeEEEEEEecC---------C---CC
Confidence 478899999999999999875432 35578899999999999887663111 1 22
Q ss_pred hhHHHHHHHHHHHHH
Q 016924 101 KIVKDFGDYADLCFK 115 (380)
Q Consensus 101 ~~~~~f~~ya~~~~~ 115 (380)
...+.+.++++.+.+
T Consensus 146 ~~~~~~~~~~~~~~~ 160 (275)
T cd07937 146 HTLEYYVKLAKELED 160 (275)
T ss_pred CCHHHHHHHHHHHHH
Confidence 235667777777654
No 117
>PRK14511 maltooligosyl trehalose synthase; Provisional
Probab=52.94 E-value=24 Score=39.04 Aligned_cols=56 Identities=20% Similarity=0.291 Sum_probs=41.1
Q ss_pred ccCcHHHHHHHHHcCCCEEEeccc---------------cccccccCCCCCCccchHHHHHHHHHHHHHHCCCeEEEEc
Q 016924 18 YFRYKEDIALVKQVGFDSIRFSIS---------------WSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTL 81 (380)
Q Consensus 18 y~~~~eDi~l~~~lG~~~~R~si~---------------W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~~tL 81 (380)
+....+-+.-+++||++++=+|=- +.+|-|.- | +.+=+++++++++++||++|+.+
T Consensus 19 f~~~~~~l~YL~~LGis~IyLsPi~~a~~gs~hGYdv~D~~~idp~l---G-----t~e~f~~Lv~aah~~Gi~VIlDi 89 (879)
T PRK14511 19 FDDAAELVPYFADLGVSHLYLSPILAARPGSTHGYDVVDHTRINPEL---G-----GEEGLRRLAAALRAHGMGLILDI 89 (879)
T ss_pred HHHHHHHhHHHHHcCCCEEEECcCccCCCCCCCCCCcCCCCCcCCCC---C-----CHHHHHHHHHHHHHCCCEEEEEe
Confidence 344677789999999999876643 23333332 2 34568999999999999999975
No 118
>cd06599 GH31_glycosidase_Aec37 Glycosyl hydrolase family 31 (GH31) domain of a bacterial protein family represented by Escherichia coli protein Aec37. The gene encoding Aec37 (aec-37) is located within a genomic island (AGI-3) isolated from the extraintestinal avian pathogenic Escherichia coli strain BEN2908. The function of Aec37 and its orthologs is unknown; however, deletion of a region of the genome that includes aec-37 affects the assimilation of seven carbohydrates, decreases growth rate of the strain in minimal medium containing galacturonate or trehalose, and attenuates the virulence of E. coli BEN2908 in chickens. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=52.38 E-value=1.3e+02 Score=28.96 Aligned_cols=110 Identities=16% Similarity=0.121 Sum_probs=63.4
Q ss_pred HHHHHHHHHcCCC--EEEeccccccccccCCCCCCccchHHHHHHHHHHHHHHCCCeEEEEcCCCC---CcHhHHHh---
Q 016924 22 KEDIALVKQVGFD--SIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFHWD---TPQALEDE--- 93 (380)
Q Consensus 22 ~eDi~l~~~lG~~--~~R~si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~~tL~h~~---~P~~l~~~--- 93 (380)
.+-++.+++.|+. ++=+.+.|....-.....-.+|.+..---++||+.|+++|+++++.++-+- .|..-+.+
T Consensus 32 ~~~~~~~r~~~iP~d~i~ld~~~~~~~~~~~~~f~~d~~~FPdp~~mi~~L~~~g~k~~~~i~P~i~~~~~~y~e~~~~g 111 (317)
T cd06599 32 LEFIDKCREHDIPCDSFHLSSGYTSIEGGKRYVFNWNKDRFPDPAAFVAKFHERGIRLAPNIKPGLLQDHPRYKELKEAG 111 (317)
T ss_pred HHHHHHHHHcCCCeeEEEEeccccccCCCceeeeecCcccCCCHHHHHHHHHHCCCEEEEEeCCcccCCCHHHHHHHHCC
Confidence 3446777888875 444444565431100001234443334468999999999999998776432 22211100
Q ss_pred -----------h-----CC------CCChhhHHHHHHHHHHHHHHhCCcCcEEEecCCCcc
Q 016924 94 -----------Y-----GG------FLSPKIVKDFGDYADLCFKEFGDRVKHWITLNEPET 132 (380)
Q Consensus 94 -----------~-----gg------w~~~~~~~~f~~ya~~~~~~~~~~v~~w~t~NEp~~ 132 (380)
+ +| +.||+..+.|.+..+......|- .-+|+=+|||.+
T Consensus 112 ~~v~~~~g~~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~~~~Gv-dg~w~D~~E~~~ 171 (317)
T cd06599 112 AFIKPPDGREPSIGQFWGGVGSFVDFTNPEGREWWKEGVKEALLDLGI-DSTWNDNNEYEI 171 (317)
T ss_pred cEEEcCCCCCcceecccCCCeEeecCCChHHHHHHHHHHHHHHhcCCC-cEEEecCCCCcc
Confidence 0 01 35888888888777555444442 257788999974
No 119
>cd06591 GH31_xylosidase_XylS XylS is a glycosyl hydrolase family 31 (GH31) alpha-xylosidase found in prokaryotes, eukaryotes, and archaea, that catalyzes the release of alpha-xylose from the non-reducing terminal side of the alpha-xyloside substrate. XylS has been characterized in Sulfolobus solfataricus where it hydrolyzes isoprimeverose, the p-nitrophenyl-beta derivative of isoprimeverose, and xyloglucan oligosaccharides, and has transxylosidic activity. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The XylS family corresponds to subgroup 3 in the Ernst et al classification of GH31 enzymes.
Probab=51.47 E-value=1.1e+02 Score=29.49 Aligned_cols=110 Identities=13% Similarity=0.106 Sum_probs=61.7
Q ss_pred HHHHHHHHHcCCC--EEEeccccccccccCCCCCCccchHHHHHHHHHHHHHHCCCeEEEEcCCC---CCcHhHHHh---
Q 016924 22 KEDIALVKQVGFD--SIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFHW---DTPQALEDE--- 93 (380)
Q Consensus 22 ~eDi~l~~~lG~~--~~R~si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~~tL~h~---~~P~~l~~~--- 93 (380)
.+-++.+++.|+. ++=+.+.|-.=.--+ +-.+|.+.+.--.++|+.|+++|+++++.+.-+ +.+.+-+-+
T Consensus 27 ~~~~~~~~~~~iP~d~i~lD~~~~~~~~~~--~f~~d~~~FPdp~~mi~~L~~~G~kv~~~i~P~v~~~~~~y~e~~~~g 104 (319)
T cd06591 27 LDVAKEYRKRGIPLDVIVQDWFYWPKQGWG--EWKFDPERFPDPKAMVRELHEMNAELMISIWPTFGPETENYKEMDEKG 104 (319)
T ss_pred HHHHHHHHHhCCCccEEEEechhhcCCCce--eEEEChhhCCCHHHHHHHHHHCCCEEEEEecCCcCCCChhHHHHHHCC
Confidence 3345666777554 554444442111000 123455444456899999999999999876422 122211000
Q ss_pred h-----------------CC---CCChhhHHHHHHHHHHHHHHhCCcCcEEEecCCCcccc
Q 016924 94 Y-----------------GG---FLSPKIVKDFGDYADLCFKEFGDRVKHWITLNEPETVG 134 (380)
Q Consensus 94 ~-----------------gg---w~~~~~~~~f~~ya~~~~~~~~~~v~~w~t~NEp~~~~ 134 (380)
| .+ |.||+..+.|.+..+..+...|- --+|+=+|||..+.
T Consensus 105 ~~v~~~~g~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~~~Gv-dg~w~D~~Ep~~~~ 164 (319)
T cd06591 105 YLIKTDRGPRVTMQFGGNTRFYDATNPEAREYYWKQLKKNYYDKGV-DAWWLDAAEPEYSV 164 (319)
T ss_pred EEEEcCCCCeeeeeCCCCccccCCCCHHHHHHHHHHHHHHhhcCCC-cEEEecCCCCCccC
Confidence 0 12 56888888877655544444432 35779999998653
No 120
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=50.90 E-value=1.2e+02 Score=29.67 Aligned_cols=54 Identities=17% Similarity=0.235 Sum_probs=40.6
Q ss_pred cHHHHHHHHHcCCCEEEeccccccccccCCCCCCccchHHHHHHHHHHHHHHCCCeEEEEcC--CCCCcHh
Q 016924 21 YKEDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLF--HWDTPQA 89 (380)
Q Consensus 21 ~~eDi~l~~~lG~~~~R~si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~~tL~--h~~~P~~ 89 (380)
..+|++...+.|++.+|+....+.. +-..+.|+.+++.|+++.+.+. |...|..
T Consensus 89 ~~~dl~~a~~~gvd~iri~~~~~e~---------------d~~~~~i~~ak~~G~~v~~~l~~s~~~~~e~ 144 (333)
T TIGR03217 89 TVHDLKAAYDAGARTVRVATHCTEA---------------DVSEQHIGMARELGMDTVGFLMMSHMTPPEK 144 (333)
T ss_pred CHHHHHHHHHCCCCEEEEEeccchH---------------HHHHHHHHHHHHcCCeEEEEEEcccCCCHHH
Confidence 4689999999999999988754322 2247899999999999988873 4334443
No 121
>TIGR03581 EF_0839 conserved hypothetical protein EF_0839/AHA_3917. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=50.66 E-value=64 Score=29.60 Aligned_cols=56 Identities=20% Similarity=0.517 Sum_probs=41.5
Q ss_pred cCCcccCcHHHHHHHHHcCCCEEEec----------------------cccccccccCCCCCCccchHHHHHHHHHHHHH
Q 016924 14 ADNFYFRYKEDIALVKQVGFDSIRFS----------------------ISWSRILPHGNISGGVNQQGVDFYNNLINELI 71 (380)
Q Consensus 14 a~~~y~~~~eDi~l~~~lG~~~~R~s----------------------i~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~ 71 (380)
+.+---.-+.-++++|+||.+++.|- + | ++|.| -+| ++.+..++.-++
T Consensus 130 ~~~~iV~vetAiaml~dmG~~SiKffPM~Gl~~leE~~avA~aca~~g~-~--lEPTG----GId---l~Nf~~I~~i~l 199 (236)
T TIGR03581 130 GKEAIVPIETAIAMLKDMGGSSVKFFPMGGLKHLEEYAAVAKACAKHGF-Y--LEPTG----GID---LDNFEEIVQIAL 199 (236)
T ss_pred CCCceeeHHHHHHHHHHcCCCeeeEeecCCcccHHHHHHHHHHHHHcCC-c--cCCCC----Ccc---HHhHHHHHHHHH
Confidence 33434456777999999999998763 2 2 57765 466 477899999999
Q ss_pred HCCCeEEE
Q 016924 72 SNGLTPFV 79 (380)
Q Consensus 72 ~~gi~p~~ 79 (380)
+.|++-++
T Consensus 200 daGv~kvi 207 (236)
T TIGR03581 200 DAGVEKVI 207 (236)
T ss_pred HcCCCeec
Confidence 99998764
No 122
>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional
Probab=50.63 E-value=21 Score=41.20 Aligned_cols=57 Identities=16% Similarity=0.269 Sum_probs=37.0
Q ss_pred HHHHHHHHcCCCEEEecccccccc----------------ccCCCCCCcc--ch--HHHHHHHHHHHHHHCCCeEEEEc
Q 016924 23 EDIALVKQVGFDSIRFSISWSRIL----------------PHGNISGGVN--QQ--GVDFYNNLINELISNGLTPFVTL 81 (380)
Q Consensus 23 eDi~l~~~lG~~~~R~si~W~ri~----------------p~~~~~g~~n--~~--~~~~y~~~i~~l~~~gi~p~~tL 81 (380)
+.|+-+|+||++++=+.=-..-.. |... -.++ .. .++=+++||++|.++||++|+.+
T Consensus 191 ~~i~yLk~LGvt~I~L~Pi~~~~~~~~~~~~g~~~yWGY~~~~y--fa~dp~yg~~~~~efk~lV~~~H~~GI~VILDv 267 (1221)
T PRK14510 191 EAISYLKKLGVSIVELNPIFASVDEHHLPQLGLSNYWGYNTVAF--LAPDPRLAPGGEEEFAQAIKEAQSAGIAVILDV 267 (1221)
T ss_pred hhHHHHHHcCCCEEEeCCccccCcccccccccCcCcCCCCCCCC--CCcChhhccCcHHHHHHHHHHHHHCCCEEEEEE
Confidence 557899999999987762211110 0000 0111 11 45668999999999999999974
No 123
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=50.32 E-value=26 Score=33.37 Aligned_cols=68 Identities=16% Similarity=0.354 Sum_probs=47.4
Q ss_pred HHHHHHHHHcCCCEEEeccccccccccCCCCCCccchHHHHHHHHHHHHHHCCCeEEEEcCCCCCcHhHHHhhCCCCChh
Q 016924 22 KEDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFHWDTPQALEDEYGGFLSPK 101 (380)
Q Consensus 22 ~eDi~l~~~lG~~~~R~si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~~tL~h~~~P~~l~~~~ggw~~~~ 101 (380)
++-+++++++|++.+.+.+= +.-++..+++|+++++.+.+++| +|.+|--..|.=++..|....+++
T Consensus 109 ~~~f~~~~~~Gv~GvKidF~-----------~~d~Q~~v~~y~~i~~~AA~~~L--mvnfHg~~kPtG~~RTyPN~mT~E 175 (273)
T PF10566_consen 109 DEAFKLYAKWGVKGVKIDFM-----------DRDDQEMVNWYEDILEDAAEYKL--MVNFHGATKPTGLRRTYPNLMTRE 175 (273)
T ss_dssp HHHHHHHHHCTEEEEEEE-------------SSTSHHHHHHHHHHHHHHHHTT---EEEETTS---TTHHHCSTTEEEE-
T ss_pred HHHHHHHHHcCCCEEeeCcC-----------CCCCHHHHHHHHHHHHHHHHcCc--EEEecCCcCCCcccccCccHHHHH
Confidence 66689999999999998874 33568889999999999999987 666666667776666555544444
Q ss_pred h
Q 016924 102 I 102 (380)
Q Consensus 102 ~ 102 (380)
-
T Consensus 176 g 176 (273)
T PF10566_consen 176 G 176 (273)
T ss_dssp -
T ss_pred H
Confidence 3
No 124
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=49.62 E-value=72 Score=32.66 Aligned_cols=51 Identities=14% Similarity=0.096 Sum_probs=38.2
Q ss_pred HHHHHHHHHcCCCEEEeccccccccccCCCCCCccchHHHHHHHHHHHHHHCCCeEEEEcCCCCCc
Q 016924 22 KEDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFHWDTP 87 (380)
Q Consensus 22 ~eDi~l~~~lG~~~~R~si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~~tL~h~~~P 87 (380)
++|++.+.+.|++.+|+.++-+.+. -....|+.++++|+.+.+++..-+-|
T Consensus 99 ~~~v~~A~~~Gvd~irif~~lnd~~---------------n~~~~v~~ak~~G~~v~~~i~~t~~p 149 (448)
T PRK12331 99 ESFVQKSVENGIDIIRIFDALNDVR---------------NLETAVKATKKAGGHAQVAISYTTSP 149 (448)
T ss_pred HHHHHHHHHCCCCEEEEEEecCcHH---------------HHHHHHHHHHHcCCeEEEEEEeecCC
Confidence 5567999999999999998644331 14668889999999888777654445
No 125
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=49.54 E-value=53 Score=30.25 Aligned_cols=66 Identities=18% Similarity=0.188 Sum_probs=41.9
Q ss_pred cCcHHHHHHHHHcCCCEEEeccccccccccCCCCCCccchHHHHHHHHHHHHHHCCCeEEEE-cCCCCCc
Q 016924 19 FRYKEDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVT-LFHWDTP 87 (380)
Q Consensus 19 ~~~~eDi~l~~~lG~~~~R~si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~~t-L~h~~~P 87 (380)
+.+++=++.+++||.+.+|+...+. |............++...++.+.+.+.||+..+= +.+++.|
T Consensus 84 ~~~~~~i~~a~~lg~~~i~~~~g~~---~~~~~~~~~~~~~~~~l~~l~~~A~~~gi~l~lE~~~~~~~~ 150 (254)
T TIGR03234 84 EGVALAIAYARALGCPQVNCLAGKR---PAGVSPEEARATLVENLRYAADALDRIGLTLLIEPINSFDMP 150 (254)
T ss_pred HHHHHHHHHHHHhCCCEEEECcCCC---CCCCCHHHHHHHHHHHHHHHHHHHHhcCCEEEEEECCcccCC
Confidence 4566678899999999998654321 2110001222344567888888999999998884 3445444
No 126
>PRK05628 coproporphyrinogen III oxidase; Validated
Probab=49.49 E-value=72 Score=31.54 Aligned_cols=96 Identities=17% Similarity=0.170 Sum_probs=56.1
Q ss_pred CcHHHHHHHHHcCCCEEEeccc-cc-cccccCCCCCCccchHHHHHHHHHHHHHHCCCe-EEEEcCCCCCcHhHHHhhCC
Q 016924 20 RYKEDIALVKQVGFDSIRFSIS-WS-RILPHGNISGGVNQQGVDFYNNLINELISNGLT-PFVTLFHWDTPQALEDEYGG 96 (380)
Q Consensus 20 ~~~eDi~l~~~lG~~~~R~si~-W~-ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~gi~-p~~tL~h~~~P~~l~~~~gg 96 (380)
.-++.+++|+++|++.+.+++. -+ ++.-.- ....+ .+...+.++.+++.|+. +.++|- +++|.
T Consensus 106 i~~e~l~~l~~~G~~rvslGvQS~~~~~L~~l--~R~~s---~~~~~~a~~~l~~~g~~~v~~dli-~GlPg-------- 171 (375)
T PRK05628 106 TSPEFFAALRAAGFTRVSLGMQSAAPHVLAVL--DRTHT---PGRAVAAAREARAAGFEHVNLDLI-YGTPG-------- 171 (375)
T ss_pred CCHHHHHHHHHcCCCEEEEecccCCHHHHHHc--CCCCC---HHHHHHHHHHHHHcCCCcEEEEEe-ccCCC--------
Confidence 3568899999999997777773 21 222111 01122 34567889999999998 666653 34442
Q ss_pred CCChhhHHHHHHHHHHHHHHhCCcCcEEEecCCCccc
Q 016924 97 FLSPKIVKDFGDYADLCFKEFGDRVKHWITLNEPETV 133 (380)
Q Consensus 97 w~~~~~~~~f~~ya~~~~~~~~~~v~~w~t~NEp~~~ 133 (380)
++.+.|.+=.+.+.+.=-+++..+...=+|...
T Consensus 172 ----qt~~~~~~tl~~~~~l~~~~i~~y~l~~~~gT~ 204 (375)
T PRK05628 172 ----ESDDDWRASLDAALEAGVDHVSAYALIVEDGTA 204 (375)
T ss_pred ----CCHHHHHHHHHHHHhcCCCEEEeeeeecCCCCh
Confidence 234555555554443223556555544466544
No 127
>cd02742 GH20_hexosaminidase Beta-N-acetylhexosaminidases of glycosyl hydrolase family 20 (GH20) catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. These enzymes are broadly distributed in microorganisms, plants and animals, and play roles in various key physiological and pathological processes. These processes include cell structural integrity, energy storage, cellular signaling, fertilization, pathogen defense, viral penetration, the development of carcinomas, inflammatory events and lysosomal storage disorders. The GH20 enzymes include the eukaryotic beta-N-acetylhexosaminidases A and B, the bacterial chitobiases, dispersin B, and lacto-N-biosidase. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by the solvent or the enzyme, but by the substrate itself.
Probab=49.25 E-value=57 Score=31.34 Aligned_cols=64 Identities=14% Similarity=0.296 Sum_probs=45.7
Q ss_pred cHHHHHHHHHcCCCEEEeccc----ccc---ccccCC----------CCCCccchHHHHHHHHHHHHHHCCCeEEEEcCC
Q 016924 21 YKEDIALVKQVGFDSIRFSIS----WSR---ILPHGN----------ISGGVNQQGVDFYNNLINELISNGLTPFVTLFH 83 (380)
Q Consensus 21 ~~eDi~l~~~lG~~~~R~si~----W~r---i~p~~~----------~~g~~n~~~~~~y~~~i~~l~~~gi~p~~tL~h 83 (380)
.++-|+.|+..++|.+.+-++ |+- ..|.-. ..|.+.+ +=++++++.++++||++|.-+
T Consensus 18 lk~~id~ma~~K~N~lhlHl~D~~~~~le~~~~p~l~~~g~~~~~~~~~~~yT~---~di~elv~yA~~rgI~viPEi-- 92 (303)
T cd02742 18 IKRTIDVLARYKINTFHWHLTDDQAWRIESKKFPELAEKGGQINPRSPGGFYTY---AQLKDIIEYAAARGIEVIPEI-- 92 (303)
T ss_pred HHHHHHHHHHhCCcEEEEeeecCCCceEeeCccchhhhhcccccCCCCCCeECH---HHHHHHHHHHHHcCCEEEEec--
Confidence 566789999999999888776 521 223210 0234555 447999999999999999886
Q ss_pred CCCcHhH
Q 016924 84 WDTPQAL 90 (380)
Q Consensus 84 ~~~P~~l 90 (380)
|+|...
T Consensus 93 -D~PGH~ 98 (303)
T cd02742 93 -DMPGHS 98 (303)
T ss_pred -cchHHH
Confidence 788654
No 128
>PTZ00445 p36-lilke protein; Provisional
Probab=48.53 E-value=39 Score=30.94 Aligned_cols=55 Identities=18% Similarity=0.259 Sum_probs=39.2
Q ss_pred HHHHHHcCCCEEEecccccccc-ccCCCCCCccch---------HHHHHHHHHHHHHHCCCeEEEEcC
Q 016924 25 IALVKQVGFDSIRFSISWSRIL-PHGNISGGVNQQ---------GVDFYNNLINELISNGLTPFVTLF 82 (380)
Q Consensus 25 i~l~~~lG~~~~R~si~W~ri~-p~~~~~g~~n~~---------~~~~y~~~i~~l~~~gi~p~~tL~ 82 (380)
++++++.|++++=+.++=.-|- -+| |-.++. +=.-...++..|+++||.++|..+
T Consensus 35 v~~L~~~GIk~Va~D~DnTlI~~Hsg---G~~~~~~~~~~~~~~~tpefk~~~~~l~~~~I~v~VVTf 99 (219)
T PTZ00445 35 VDLLNECGIKVIASDFDLTMITKHSG---GYIDPDNDDIRVLTSVTPDFKILGKRLKNSNIKISVVTF 99 (219)
T ss_pred HHHHHHcCCeEEEecchhhhhhhhcc---cccCCCcchhhhhccCCHHHHHHHHHHHHCCCeEEEEEc
Confidence 6889999999999888733332 122 333332 234478899999999999998775
No 129
>TIGR01211 ELP3 histone acetyltransferase, ELP3 family. The Saccharomyces cerevisiae member YPL086C has been characterized in vitro as an N-terminal acetyltransferase for all four core histones. It is a component of the RNA polymerase II holoenzyme, designated Elp3p for Elongator Protein 3. Members of this family are found in eukaryotes and archaea. These proteins are part of the larger set of GNAT acetyltransferases.
Probab=48.36 E-value=65 Score=33.67 Aligned_cols=108 Identities=19% Similarity=0.173 Sum_probs=64.8
Q ss_pred cHHHHHHHHHcCCCEEEeccc--cccccccCCCCCCccchHHHHHHHHHHHHHHCCCeEEEEcCCCCCcHhHHHhhCCCC
Q 016924 21 YKEDIALVKQVGFDSIRFSIS--WSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFHWDTPQALEDEYGGFL 98 (380)
Q Consensus 21 ~~eDi~l~~~lG~~~~R~si~--W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~~tL~h~~~P~~l~~~~ggw~ 98 (380)
-++.+++|+++|++.+-+++. -.+++-.-. .| .+ ++-..+.++.+++.|+++.+.|- +++|.
T Consensus 205 ~~e~L~~L~~~G~~rVslGVQS~~d~VL~~in-Rg-ht---~~~v~~Ai~~lr~~G~~v~~~LM-~GLPg---------- 268 (522)
T TIGR01211 205 REEHIDRMLKLGATRVELGVQTIYNDILERTK-RG-HT---VRDVVEATRLLRDAGLKVVYHIM-PGLPG---------- 268 (522)
T ss_pred CHHHHHHHHHcCCCEEEEECccCCHHHHHHhC-CC-CC---HHHHHHHHHHHHHcCCeEEEEee-cCCCC----------
Confidence 468899999999998888773 223322110 11 11 34456788889999998777664 45552
Q ss_pred ChhhHHHHHHHHHHHHH--HhC-CcCcEEEecCCCccccccccccCccCCC
Q 016924 99 SPKIVKDFGDYADLCFK--EFG-DRVKHWITLNEPETVGECGYAKGTKAPG 146 (380)
Q Consensus 99 ~~~~~~~f~~ya~~~~~--~~~-~~v~~w~t~NEp~~~~~~gy~~g~~~Pg 146 (380)
++.+.+.+=++.+++ .++ |.|+.+-+.=.|......-|..|.|.|-
T Consensus 269 --qt~e~~~~t~~~l~~~~~l~pD~Ikiypl~V~~gT~L~~~~~~G~y~p~ 317 (522)
T TIGR01211 269 --SSFERDLEMFREIFEDPRFKPDMLKIYPTLVTRGTELYELWKRGEYKPY 317 (522)
T ss_pred --CCHHHHHHHHHHHHhccCCCcCEEEEecceeeCCCHHHHHHHcCCCCCC
Confidence 223455555555654 233 5667666555555443333556666654
No 130
>PF03511 Fanconi_A: Fanconi anaemia group A protein; InterPro: IPR003516 Fanconi anaemia (FA) [, , ] is a recessive inherited disease characterised by defective DNA repair. FA cells are sensitive to DNA cross-linking agents that cause chromosomal instability and cell death. The disease is manifested clinically by progressive pancytopenia, variable physical anomalies, and predisposition to malignancy []. Four complementation groups have been identified, designated A to D. The FA group A gene (FAA) has been cloned [], but its function remains to be elucidated.
Probab=48.32 E-value=13 Score=26.90 Aligned_cols=38 Identities=18% Similarity=0.406 Sum_probs=32.2
Q ss_pred ccccccCCCCCCccchHHHHHHHHHHHHHHCCCeEEEEcCCC
Q 016924 43 SRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFHW 84 (380)
Q Consensus 43 ~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~~tL~h~ 84 (380)
+++.|.. +.--.++++..-+++..|.++|| +++.|++-
T Consensus 19 s~l~p~~---~~d~~kaldiCaeIL~cLE~R~i-sWl~LFql 56 (64)
T PF03511_consen 19 SYLAPKE---GADSLKALDICAEILGCLEKRKI-SWLVLFQL 56 (64)
T ss_pred HhcCccc---ccccHHHHHHHHHHHHHHHhCCC-cHHHhhhc
Confidence 7788886 55667899999999999999999 88888764
No 131
>TIGR02401 trehalose_TreY malto-oligosyltrehalose synthase. This enzyme, formally named (1-4)-alpha-D-glucan 1-alpha-D-glucosylmutase, is the TreY enzyme of the TreYZ pathway of trehalose biosynthesis, an alternative to the OtsAB pathway. Trehalose may be incorporated into more complex compounds but is best known as compatible solute. It is one of the most effective osmoprotectants, and unlike the various betaines does not require nitrogen for its synthesis.
Probab=48.01 E-value=32 Score=37.90 Aligned_cols=63 Identities=16% Similarity=0.191 Sum_probs=41.0
Q ss_pred cCcHHHHHHHHHcCCCEEEecccccccccc--CC--C-CCCcc--chHHHHHHHHHHHHHHCCCeEEEEc
Q 016924 19 FRYKEDIALVKQVGFDSIRFSISWSRILPH--GN--I-SGGVN--QQGVDFYNNLINELISNGLTPFVTL 81 (380)
Q Consensus 19 ~~~~eDi~l~~~lG~~~~R~si~W~ri~p~--~~--~-~g~~n--~~~~~~y~~~i~~l~~~gi~p~~tL 81 (380)
....+-++-+++||++++=+|=-+.-.-.+ |. . -..+| ..+.+-+++++++++++||.+|+.+
T Consensus 16 ~~~~~~L~YL~~LGv~~V~lsPi~~a~~gs~hGYdv~D~~~idp~lGt~edf~~Lv~aah~~Gm~vIlDi 85 (825)
T TIGR02401 16 DDAAALLPYLKSLGVSHLYLSPILTAVPGSTHGYDVVDHSEINPELGGEEGLRRLSEAARARGLGLIVDI 85 (825)
T ss_pred HHHHHhhHHHHHcCCCEEEeCcCccCCCCCCCCCCCCCCCCcCCCCCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 346778899999999999777433211000 00 0 00111 2235668999999999999999985
No 132
>PF04914 DltD_C: DltD C-terminal region; InterPro: IPR006998 The dlt operon (dltA to dltD) of Lactobacillus rhamnosus 7469 encodes four proteins responsible for the esterification of lipoteichoic acid (LTA) by D-alanine. These esters play an important role in controlling the net anionic charge of the poly (GroP) moiety of LTA. DltA and DltC encode the D-alanine-D-alanyl carrier protein ligase (Dcl) and D-alanyl carrier protein (Dcp), respectively. Whereas the functions of DltA and DltC are defined, the functions of DltB and DltD are unknown. In vitro assays showed that DltD bound Dcp for ligation with D-alanine by Dcl in the presence of ATP. In contrast, the homologue of Dcp, the Escherichia coli acyl carrier protein (ACP), involved in fatty acid biosynthesis, was not bound to DltD and thus was not ligated with D-alanine. DltD also catalyzed the hydrolysis of the mischarged D-alanyl-ACP. The hydrophobic N-terminal sequence of DltD was required for anchoring the protein in the membrane. It is hypothesized that this membrane-associated DltD facilitates the binding of Dcp and Dcl for ligation of Dcp with D-alanine and that the resulting D-alanyl-Dcp is translocated to the primary site of D-alanylation []. These sequences contain the C-terminal region of DltD.; PDB: 3BMA_C.
Probab=46.77 E-value=67 Score=26.96 Aligned_cols=58 Identities=16% Similarity=0.181 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHCCCeEEEEcCCCCCcHhHHHhhCCCCChhhHHHHHHHHHHHHHHhCCcC
Q 016924 60 VDFYNNLINELISNGLTPFVTLFHWDTPQALEDEYGGFLSPKIVKDFGDYADLCFKEFGDRV 121 (380)
Q Consensus 60 ~~~y~~~i~~l~~~gi~p~~tL~h~~~P~~l~~~~ggw~~~~~~~~f~~ya~~~~~~~~~~v 121 (380)
.+=+.-+++.|++.|++|++.+.= -.+.|.. |-|. +++..+.|.+-.+.++++.|=+|
T Consensus 35 y~Dl~l~L~~~k~~g~~~lfVi~P-vNg~wyd--ytG~-~~~~r~~~y~kI~~~~~~~gf~v 92 (130)
T PF04914_consen 35 YDDLQLLLDVCKELGIDVLFVIQP-VNGKWYD--YTGL-SKEMRQEYYKKIKYQLKSQGFNV 92 (130)
T ss_dssp HHHHHHHHHHHHHTT-EEEEEE-----HHHHH--HTT---HHHHHHHHHHHHHHHHTTT--E
T ss_pred HHHHHHHHHHHHHcCCceEEEecC-CcHHHHH--HhCC-CHHHHHHHHHHHHHHHHHCCCEE
Confidence 455688999999999999998831 1234543 5675 56777778888888888887643
No 133
>cd06545 GH18_3CO4_chitinase The Bacteroides thetaiotaomicron protein represented by pdb structure 3CO4 is an uncharacterized bacterial member of the family 18 glycosyl hydrolases with homologs found in Flavobacterium, Stigmatella, and Pseudomonas.
Probab=46.65 E-value=69 Score=29.71 Aligned_cols=74 Identities=12% Similarity=0.130 Sum_probs=44.5
Q ss_pred eccccccccccCCCCCCccchHHHHHHHHHHHHHHCCCeEEEEcCCCCCcHhHHHhhCCCCChhhHHHHHHHHHHHHHHh
Q 016924 38 FSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFHWDTPQALEDEYGGFLSPKIVKDFGDYADLCFKEF 117 (380)
Q Consensus 38 ~si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~~tL~h~~~P~~l~~~~ggw~~~~~~~~f~~ya~~~~~~~ 117 (380)
+.+.|..+.++|. -.... .......+++.++++|+++++++..+....... -..+++..+.|++=+-..++++
T Consensus 26 v~~~f~~i~~~G~--l~~~~-~~~~~~~~~~~~~~~~~kvl~sigg~~~~~~~~----~~~~~~~r~~fi~~lv~~~~~~ 98 (253)
T cd06545 26 INLAFANPDANGT--LNANP-VRSELNSVVNAAHAHNVKILISLAGGSPPEFTA----ALNDPAKRKALVDKIINYVVSY 98 (253)
T ss_pred EEEEEEEECCCCe--EEecC-cHHHHHHHHHHHHhCCCEEEEEEcCCCCCcchh----hhcCHHHHHHHHHHHHHHHHHh
Confidence 3445777766652 12211 124567889999999999999997665432111 1235666667766655555665
Q ss_pred C
Q 016924 118 G 118 (380)
Q Consensus 118 ~ 118 (380)
+
T Consensus 99 ~ 99 (253)
T cd06545 99 N 99 (253)
T ss_pred C
Confidence 4
No 134
>PRK08446 coproporphyrinogen III oxidase; Provisional
Probab=46.24 E-value=74 Score=31.21 Aligned_cols=93 Identities=18% Similarity=0.210 Sum_probs=55.6
Q ss_pred cHHHHHHHHHcCCCEEEecc-ccc-cccccCCCCCCccchHHHHHHHHHHHHHHCCCeEE-EEcCCCCCcHhHHHhhCCC
Q 016924 21 YKEDIALVKQVGFDSIRFSI-SWS-RILPHGNISGGVNQQGVDFYNNLINELISNGLTPF-VTLFHWDTPQALEDEYGGF 97 (380)
Q Consensus 21 ~~eDi~l~~~lG~~~~R~si-~W~-ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~-~tL~h~~~P~~l~~~~ggw 97 (380)
-++.++.|+++|+|.+.++| +-+ .+...- |+.. ..+-..+.|+.+++.|+..+ ++|- +++|.
T Consensus 97 ~~e~l~~l~~~GvnRiSiGvQS~~~~~L~~l---gR~~--~~~~~~~ai~~lr~~g~~~v~iDli-~GlPg--------- 161 (350)
T PRK08446 97 TKAWLKGMKNLGVNRISFGVQSFNEDKLKFL---GRIH--SQKQIIKAIENAKKAGFENISIDLI-YDTPL--------- 161 (350)
T ss_pred CHHHHHHHHHcCCCEEEEecccCCHHHHHHc---CCCC--CHHHHHHHHHHHHHcCCCEEEEEee-cCCCC---------
Confidence 37889999999999877777 332 222221 2221 13557888999999999754 5653 45552
Q ss_pred CChhhHHHHHHHHHHHHHHhCCcCcEEEecCCCc
Q 016924 98 LSPKIVKDFGDYADLCFKEFGDRVKHWITLNEPE 131 (380)
Q Consensus 98 ~~~~~~~~f~~ya~~~~~~~~~~v~~w~t~NEp~ 131 (380)
++.+.|.+-.+.+.+-=-++|..+...=||.
T Consensus 162 ---qt~~~~~~~l~~~~~l~~~~is~y~L~~~~g 192 (350)
T PRK08446 162 ---DNKKLLKEELKLAKELPINHLSAYSLTIEEN 192 (350)
T ss_pred ---CCHHHHHHHHHHHHhcCCCEEEeccceecCC
Confidence 3345566666655443234455444433444
No 135
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]
Probab=44.18 E-value=2e+02 Score=28.31 Aligned_cols=87 Identities=21% Similarity=0.301 Sum_probs=62.4
Q ss_pred CcccCCcccCcHHHHHHHHHcCCCEEEeccccccccccCCCCCCccchHHHHHHHHHHHHHHCCCeEEEEcCCCCCcHhH
Q 016924 11 GDVADNFYFRYKEDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFHWDTPQAL 90 (380)
Q Consensus 11 ~~~a~~~y~~~~eDi~l~~~lG~~~~R~si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~~tL~h~~~P~~l 90 (380)
+-+|-=||+ |+ =+....+.|+..+|+. | |.+-.+ +....+++.++++||-.=+...|=.+..-+
T Consensus 76 PLVaDiHf~-~r-la~~~~~~g~~k~RIN-------P-----GNig~~--~~v~~vVe~Ak~~g~piRIGVN~GSLek~~ 139 (361)
T COG0821 76 PLVADIHFD-YR-LALEAAECGVDKVRIN-------P-----GNIGFK--DRVREVVEAAKDKGIPIRIGVNAGSLEKRL 139 (361)
T ss_pred CEEEEeecc-HH-HHHHhhhcCcceEEEC-------C-----cccCcH--HHHHHHHHHHHHcCCCEEEecccCchhHHH
Confidence 345555665 43 2334457788888763 3 333222 378999999999999999999999999999
Q ss_pred HHhhCCCCChhhHHHHHHHHHHH
Q 016924 91 EDEYGGFLSPKIVKDFGDYADLC 113 (380)
Q Consensus 91 ~~~~ggw~~~~~~~~f~~ya~~~ 113 (380)
.++|++-..+..++--.++|+.+
T Consensus 140 ~~ky~~pt~ealveSAl~~a~~~ 162 (361)
T COG0821 140 LEKYGGPTPEALVESALEHAELL 162 (361)
T ss_pred HHHhcCCCHHHHHHHHHHHHHHH
Confidence 99998776666666666666654
No 136
>cd06542 GH18_EndoS-like Endo-beta-N-acetylglucosaminidases are bacterial chitinases that hydrolyze the chitin core of various asparagine (N)-linked glycans and glycoproteins. The endo-beta-N-acetylglucosaminidases have a glycosyl hydrolase family 18 (GH18) catalytic domain. Some members also have an additional C-terminal glycosyl hydrolase family 20 (GH20) domain while others have an N-terminal domain of unknown function (pfam08522). Members of this family include endo-beta-N-acetylglucosaminidase S (EndoS) from Streptococcus pyogenes, EndoF1, EndoF2, EndoF3, and EndoH from Flavobacterium meningosepticum, and EndoE from Enterococcus faecalis. EndoS is a secreted endoglycosidase from Streptococcus pyogenes that specifically hydrolyzes the glycan on human IgG between two core N-acetylglucosamine residues. EndoE is a secreted endoglycosidase, encoded by the ndoE gene in Enterococcus faecalis, that hydrolyzes the glycan on human RNase B.
Probab=43.99 E-value=75 Score=29.38 Aligned_cols=55 Identities=13% Similarity=0.175 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHCCCeEEEEcCCCCCcHhHHHhhCCCCChhhHHHHHHHHHHHHHHhC
Q 016924 60 VDFYNNLINELISNGLTPFVTLFHWDTPQALEDEYGGFLSPKIVKDFGDYADLCFKEFG 118 (380)
Q Consensus 60 ~~~y~~~i~~l~~~gi~p~~tL~h~~~P~~l~~~~ggw~~~~~~~~f~~ya~~~~~~~~ 118 (380)
.+...+.|..|+++|+++++++.-+.....+ ....+++..+.|++-+..++++||
T Consensus 50 ~~~~~~~i~~l~~kG~KVl~sigg~~~~~~~----~~~~~~~~~~~fa~~l~~~v~~yg 104 (255)
T cd06542 50 LTNKETYIRPLQAKGTKVLLSILGNHLGAGF----ANNLSDAAAKAYAKAIVDTVDKYG 104 (255)
T ss_pred hHHHHHHHHHHhhCCCEEEEEECCCCCCCCc----cccCCHHHHHHHHHHHHHHHHHhC
Confidence 4667889999999999999999755432111 012344445555555555556664
No 137
>PLN02960 alpha-amylase
Probab=43.77 E-value=52 Score=36.49 Aligned_cols=95 Identities=15% Similarity=0.200 Sum_probs=56.4
Q ss_pred cccCcHHH-HHHHHHcCCCEEEeccc--------ccccc------ccCCCCCCccchHHHHHHHHHHHHHHCCCeEEEEc
Q 016924 17 FYFRYKED-IALVKQVGFDSIRFSIS--------WSRIL------PHGNISGGVNQQGVDFYNNLINELISNGLTPFVTL 81 (380)
Q Consensus 17 ~y~~~~eD-i~l~~~lG~~~~R~si~--------W~ri~------p~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~~tL 81 (380)
.|.-..+. ++-+|+||++++=+.=- |- -. |++. -|. .+=++.+|++|.++||++|+.+
T Consensus 414 tf~~~~e~~LdYLk~LGvt~IeLmPv~e~~~~~swG-Y~~~~yfa~~~~-yGt-----p~dfk~LVd~aH~~GI~VILDv 486 (897)
T PLN02960 414 SFKEFTQKVLPHVKKAGYNAIQLIGVQEHKDYSSVG-YKVTNFFAVSSR-FGT-----PDDFKRLVDEAHGLGLLVFLDI 486 (897)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCCC-CCcccCCCcccc-cCC-----HHHHHHHHHHHHHCCCEEEEEe
Confidence 34444444 89999999999877521 21 00 1110 022 3448999999999999999986
Q ss_pred --CCCCC--cHhHH--H-----------h--hCCC-------CChhhHHHHHHHHHHHHHHhC
Q 016924 82 --FHWDT--PQALE--D-----------E--YGGF-------LSPKIVKDFGDYADLCFKEFG 118 (380)
Q Consensus 82 --~h~~~--P~~l~--~-----------~--~ggw-------~~~~~~~~f~~ya~~~~~~~~ 118 (380)
.|+.- +.-|. + + +..| .++++.+.+.+=++.-+++|+
T Consensus 487 V~NH~~~d~~~~L~~FDG~~~~Yf~~~~~g~~~~WG~~~fNy~~~eVr~fLlsna~yWl~Eyh 549 (897)
T PLN02960 487 VHSYAAADEMVGLSLFDGSNDCYFHSGKRGHHKRWGTRMFKYGDHEVLHFLLSNLNWWVTEYR 549 (897)
T ss_pred cccccCCccccchhhcCCCccceeecCCCCccCCCCCcccCCCCHHHHHHHHHHHHHHHHHHC
Confidence 35421 11110 0 0 0113 246677777777777777774
No 138
>TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase. Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins described by the model hemN. This model, hemN_rel, models a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including E. coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the E. coli hemN family. The member of this family from Bacillus subtilis was shown to complement an hemF/hemN double mutant of Salmonella typimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize heme de novo.
Probab=42.84 E-value=64 Score=31.75 Aligned_cols=62 Identities=15% Similarity=0.232 Sum_probs=40.2
Q ss_pred CcHHHHHHHHHcCCCEEEeccc-cc-cccccCCCCCCccchHHHHHHHHHHHHHHCCCeEE-EEcCCCCCc
Q 016924 20 RYKEDIALVKQVGFDSIRFSIS-WS-RILPHGNISGGVNQQGVDFYNNLINELISNGLTPF-VTLFHWDTP 87 (380)
Q Consensus 20 ~~~eDi~l~~~lG~~~~R~si~-W~-ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~-~tL~h~~~P 87 (380)
.-++.++.|+++|++.+.+++. -+ ++...- |.. -..+-+.+.|+.+++.|+.++ +.|. +++|
T Consensus 98 lt~e~l~~l~~~Gv~risiGvqS~~~~~l~~l---gR~--~~~~~~~~ai~~l~~~G~~~v~~dli-~GlP 162 (360)
T TIGR00539 98 ITAEWCKGLKGAGINRLSLGVQSFRDDKLLFL---GRQ--HSAKNIAPAIETALKSGIENISLDLM-YGLP 162 (360)
T ss_pred CCHHHHHHHHHcCCCEEEEecccCChHHHHHh---CCC--CCHHHHHHHHHHHHHcCCCeEEEecc-CCCC
Confidence 3578899999999997777773 22 232221 221 123567889999999999754 4442 4555
No 139
>cd06568 GH20_SpHex_like A subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the N-acetylhexosaminidase from Streptomyces plicatus (SpHex). SpHex catalyzes the hydrolysis of N-acetyl-beta-hexosaminides. An Asp residue within the active site plays a critical role in substrate-assisted catalysis by orienting the 2-acetamido group and stabilizing the transition state. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself. Proteins belonging to this subgroup lack the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases.
Probab=42.26 E-value=85 Score=30.65 Aligned_cols=75 Identities=20% Similarity=0.362 Sum_probs=48.9
Q ss_pred CcccCCcccC--cHHHHHHHHHcCCCEEEeccc----c-------ccccccCC-------CCCCccchHHHHHHHHHHHH
Q 016924 11 GDVADNFYFR--YKEDIALVKQVGFDSIRFSIS----W-------SRILPHGN-------ISGGVNQQGVDFYNNLINEL 70 (380)
Q Consensus 11 ~~~a~~~y~~--~~eDi~l~~~lG~~~~R~si~----W-------~ri~p~~~-------~~g~~n~~~~~~y~~~i~~l 70 (380)
-|+|-.++.. .++-|+.|+..++|.+-+-++ | +++-..+. ..|.+-. +-++++++.+
T Consensus 8 lD~aR~f~~~~~lk~~id~ma~~KlN~lhlHLtD~~~~rle~~~~P~lt~~ga~~~~~~~~~~~YT~---~di~elv~yA 84 (329)
T cd06568 8 LDVARHFFTVAEVKRYIDLLALYKLNVLHLHLTDDQGWRIEIKSWPKLTEIGGSTEVGGGPGGYYTQ---EDYKDIVAYA 84 (329)
T ss_pred eeccCCCcCHHHHHHHHHHHHHhCCcEEEEEeecCCcceeeecCcccccccccccccCCCCCCcCCH---HHHHHHHHHH
Confidence 3555554422 566789999999998877663 3 22221110 0123444 4479999999
Q ss_pred HHCCCeEEEEcCCCCCcHhHH
Q 016924 71 ISNGLTPFVTLFHWDTPQALE 91 (380)
Q Consensus 71 ~~~gi~p~~tL~h~~~P~~l~ 91 (380)
+++||++|.-+ |+|....
T Consensus 85 ~~rgI~vIPEi---D~PGH~~ 102 (329)
T cd06568 85 AERHITVVPEI---DMPGHTN 102 (329)
T ss_pred HHcCCEEEEec---CCcHHHH
Confidence 99999999886 8887543
No 140
>PRK12677 xylose isomerase; Provisional
Probab=42.08 E-value=2e+02 Score=28.70 Aligned_cols=72 Identities=19% Similarity=0.249 Sum_probs=46.4
Q ss_pred CcHHHHHHHHHcCCCEEEeccccccccccCCCCCCccchHHHHHHHHHHHHHHCCCeEE-EEcCCCCCcHhHHHhhCCCC
Q 016924 20 RYKEDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPF-VTLFHWDTPQALEDEYGGFL 98 (380)
Q Consensus 20 ~~~eDi~l~~~lG~~~~R~si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~-~tL~h~~~P~~l~~~~ggw~ 98 (380)
...|-++.++++|++.+=+.. ..+.|-. -..... -+..+++-+.+.++||++. +|...|..|.+ +.|++.
T Consensus 32 ~~~E~v~~~a~~Gf~gVElh~--~~l~p~~---~~~~~~-~~~~~~lk~~l~~~GL~v~~v~~n~f~~p~~---~~g~lt 102 (384)
T PRK12677 32 DPVEAVHKLAELGAYGVTFHD--DDLVPFG---ATDAER-DRIIKRFKKALDETGLVVPMVTTNLFTHPVF---KDGAFT 102 (384)
T ss_pred CHHHHHHHHHHhCCCEEEecc--cccCCCC---CChhhh-HHHHHHHHHHHHHcCCeeEEEecCCCCCccc---cCCcCC
Confidence 468889999999999986632 2344432 111111 1346788888999999976 55555555543 237887
Q ss_pred Ch
Q 016924 99 SP 100 (380)
Q Consensus 99 ~~ 100 (380)
++
T Consensus 103 s~ 104 (384)
T PRK12677 103 SN 104 (384)
T ss_pred CC
Confidence 64
No 141
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=41.94 E-value=60 Score=30.60 Aligned_cols=65 Identities=17% Similarity=0.157 Sum_probs=47.3
Q ss_pred HHHHHHHHHcCCCEEEeccccccccccCCCCCCccchHHHHHHHHHHHHHHCCCeEEEEcCCCCCcHhHHHhhCCCCChh
Q 016924 22 KEDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFHWDTPQALEDEYGGFLSPK 101 (380)
Q Consensus 22 ~eDi~l~~~lG~~~~R~si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~~tL~h~~~P~~l~~~~ggw~~~~ 101 (380)
.+|++...+.|++.+|+++..+ .++-..++++.++++|+++.+++.+-. + .
T Consensus 85 ~~~l~~a~~~gv~~iri~~~~~---------------~~~~~~~~i~~ak~~G~~v~~~~~~a~----------~----~ 135 (266)
T cd07944 85 IDLLEPASGSVVDMIRVAFHKH---------------EFDEALPLIKAIKEKGYEVFFNLMAIS----------G----Y 135 (266)
T ss_pred HHHHHHHhcCCcCEEEEecccc---------------cHHHHHHHHHHHHHCCCeEEEEEEeec----------C----C
Confidence 4778888888888888877432 256678999999999999999986421 1 1
Q ss_pred hHHHHHHHHHHHHH
Q 016924 102 IVKDFGDYADLCFK 115 (380)
Q Consensus 102 ~~~~f~~ya~~~~~ 115 (380)
..+.+.++++.+.+
T Consensus 136 ~~~~~~~~~~~~~~ 149 (266)
T cd07944 136 SDEELLELLELVNE 149 (266)
T ss_pred CHHHHHHHHHHHHh
Confidence 34667777777654
No 142
>TIGR01232 lacD tagatose 1,6-diphosphate aldolase. This family consists of Gram-positive proteins. Tagatose 1,6-diphosphate aldolase is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=40.91 E-value=1.6e+02 Score=28.74 Aligned_cols=59 Identities=14% Similarity=0.341 Sum_probs=49.3
Q ss_pred HHHHHHHcCCCEEEeccccccccccCCCCCCccchHHHHHHHHHHHHHHCCCeEEEEcCCCCCc
Q 016924 24 DIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFHWDTP 87 (380)
Q Consensus 24 Di~l~~~lG~~~~R~si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~~tL~h~~~P 87 (380)
+.+.+|++|.+++.|=+-|. |+. +..+|..-.++..++.++|+++||-=++-+.-+|.+
T Consensus 111 s~~rike~GadavK~Llyy~---pD~--~~ein~~k~a~vervg~ec~a~dipf~lE~ltYd~~ 169 (325)
T TIGR01232 111 SAKRLKEQGANAVKFLLYYD---VDD--AEEINIQKKAYIERIGSECVAEDIPFFLEVLTYDDN 169 (325)
T ss_pred cHHHHHHhCCCeEEEEEEeC---CCC--ChHHHHHHHHHHHHHHHHHHHCCCCeEEEEeccCCC
Confidence 37889999999999988774 444 356888889999999999999999999988766544
No 143
>PRK14507 putative bifunctional 4-alpha-glucanotransferase/malto-oligosyltrehalose synthase; Provisional
Probab=40.80 E-value=79 Score=37.77 Aligned_cols=57 Identities=16% Similarity=0.243 Sum_probs=41.9
Q ss_pred CcHHHHHHHHHcCCCEEEeccccc---------------cccccCCCCCCccchHHHHHHHHHHHHHHCCCeEEEEc--C
Q 016924 20 RYKEDIALVKQVGFDSIRFSISWS---------------RILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTL--F 82 (380)
Q Consensus 20 ~~~eDi~l~~~lG~~~~R~si~W~---------------ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~~tL--~ 82 (380)
...+-+.-+++||++++=+|=-+. +|-|.- .+.+-++++++.|+++||++|+.+ .
T Consensus 759 ~~~~~l~Yl~~LGv~~i~lsPi~~a~~gs~hGYdv~D~~~idp~l--------G~~edf~~Lv~~ah~~Gi~vilDiV~N 830 (1693)
T PRK14507 759 DAEAILPYLAALGISHVYASPILKARPGSTHGYDIVDHSQINPEI--------GGEEGFERFCAALKAHGLGQLLDIVPN 830 (1693)
T ss_pred HHHHHhHHHHHcCCCEEEECCCcCCCCCCCCCCCCCCCCccCccc--------CCHHHHHHHHHHHHHCCCEEEEEeccc
Confidence 356678899999999997774443 222221 234568999999999999999985 4
Q ss_pred CC
Q 016924 83 HW 84 (380)
Q Consensus 83 h~ 84 (380)
|.
T Consensus 831 H~ 832 (1693)
T PRK14507 831 HM 832 (1693)
T ss_pred cc
Confidence 54
No 144
>PF02055 Glyco_hydro_30: O-Glycosyl hydrolase family 30; InterPro: IPR001139 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 30 GH30 from CAZY comprises enzymes with only one known activity; glucosylceramidase (3.2.1.45 from EC). Family 30 encompasses the mammalian glucosylceramidases. Human acid beta-glucosidase (D-glucosyl-N-acylsphingosine glucohydrolase), cleaves the glucosidic bonds of glucosylceramide and synthetic beta-glucosides []. Any one of over 50 different mutations in the gene of glucocerebrosidase have been found to affect activity of this hydrolase, producing variants of Gaucher disease, the most prevalent lysosomal storage disease [, ].; GO: 0004348 glucosylceramidase activity, 0006665 sphingolipid metabolic process, 0007040 lysosome organization, 0005764 lysosome; PDB: 2VT0_B 1NOF_A 2Y24_A 2WCG_B 2J25_A 3GXM_D 1Y7V_B 2NT0_C 3GXF_C 3GXD_A ....
Probab=40.57 E-value=73 Score=33.08 Aligned_cols=103 Identities=20% Similarity=0.443 Sum_probs=49.5
Q ss_pred HHcCCCEEEeccccccccccC-C---CCC-----Cccc--hHHHHHHHHHHHHHH--CCCeEEEEcCCCCCcHhHHHh--
Q 016924 29 KQVGFDSIRFSISWSRILPHG-N---ISG-----GVNQ--QGVDFYNNLINELIS--NGLTPFVTLFHWDTPQALEDE-- 93 (380)
Q Consensus 29 ~~lG~~~~R~si~W~ri~p~~-~---~~g-----~~n~--~~~~~y~~~i~~l~~--~gi~p~~tL~h~~~P~~l~~~-- 93 (380)
+.+|++..|..|-=+..-... + ..+ .++. +..++--.+|.++++ .+|+.+.+- |..|.|+-..
T Consensus 110 ~G~g~s~~R~pIgssDfs~~~Yty~d~~~D~~l~~Fs~~~~d~~~~ip~ik~a~~~~~~lki~aSp--WSpP~WMKtn~~ 187 (496)
T PF02055_consen 110 DGIGYSLLRVPIGSSDFSTRPYTYDDVPGDFNLSNFSIAREDKKYKIPLIKEALAINPNLKIFASP--WSPPAWMKTNGS 187 (496)
T ss_dssp TTT---EEEEEES--SSSSS---ST-STTHTTTTT---HHHHHTTHHHHHHHHHHHHTT-EEEEEE--S---GGGBTTSS
T ss_pred CCceEEEEEeeccCcCCcCCcccccCCCCCCccccCCccccchhhHHHHHHHHHHhCCCcEEEEec--CCCCHHHccCCc
Confidence 348999999998433332111 0 001 1221 111222245555543 358888877 9999998432
Q ss_pred h--CCCCC----hhhHHHHHHHHHHHHHHhCCc-CcEE--EecCCCccc
Q 016924 94 Y--GGFLS----PKIVKDFGDYADLCFKEFGDR-VKHW--ITLNEPETV 133 (380)
Q Consensus 94 ~--ggw~~----~~~~~~f~~ya~~~~~~~~~~-v~~w--~t~NEp~~~ 133 (380)
+ +|.+. ++..+.|++|--+.++.|..+ |+.| .+-|||...
T Consensus 188 ~~g~g~l~g~~~~~y~~~yA~Y~vkfi~aY~~~GI~i~aiT~QNEP~~~ 236 (496)
T PF02055_consen 188 MNGGGSLKGSLGDEYYQAYADYFVKFIQAYKKEGIPIWAITPQNEPDNG 236 (496)
T ss_dssp SCSS-BBSCGTTSHHHHHHHHHHHHHHHHHHCTT--ESEEESSSSCCGG
T ss_pred CcCCCccCCCCCchhHHHHHHHHHHHHHHHHHCCCCeEEEeccCCCCCC
Confidence 1 24443 345566777777777777654 5666 689999863
No 145
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=40.23 E-value=1.2e+02 Score=32.21 Aligned_cols=92 Identities=17% Similarity=0.136 Sum_probs=56.8
Q ss_pred HHHHHHHHHcCCCEEEeccccccccccCCCCCCccchHHHHHHHHHHHHHHCCCeEEEEcCCCCCc----HhHHHh----
Q 016924 22 KEDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFHWDTP----QALEDE---- 93 (380)
Q Consensus 22 ~eDi~l~~~lG~~~~R~si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~~tL~h~~~P----~~l~~~---- 93 (380)
++|++++++.|++.+|+..+.+.+ +-....++.++++|+.+.+++..-+.| ..+.+.
T Consensus 94 ~~~v~~a~~~Gvd~irif~~lnd~---------------~n~~~~i~~ak~~G~~v~~~i~~t~~p~~~~~~~~~~~~~~ 158 (582)
T TIGR01108 94 ERFVKKAVENGMDVFRIFDALNDP---------------RNLQAAIQAAKKHGAHAQGTISYTTSPVHTLETYLDLAEEL 158 (582)
T ss_pred HHHHHHHHHCCCCEEEEEEecCcH---------------HHHHHHHHHHHHcCCEEEEEEEeccCCCCCHHHHHHHHHHH
Confidence 445799999999999999765433 225667788888888888877654455 221110
Q ss_pred ------------hCCCCChhhHHHHHHHHHHHHHHhCCcCcEEEecCCCcc
Q 016924 94 ------------YGGFLSPKIVKDFGDYADLCFKEFGDRVKHWITLNEPET 132 (380)
Q Consensus 94 ------------~ggw~~~~~~~~f~~ya~~~~~~~~~~v~~w~t~NEp~~ 132 (380)
-.|...|. ...+..+.+.++++- .-.+.+-|-..+
T Consensus 159 ~~~Gad~I~i~Dt~G~~~P~---~v~~lv~~lk~~~~~-pi~~H~Hnt~Gl 205 (582)
T TIGR01108 159 LEMGVDSICIKDMAGILTPK---AAYELVSALKKRFGL-PVHLHSHATTGM 205 (582)
T ss_pred HHcCCCEEEECCCCCCcCHH---HHHHHHHHHHHhCCC-ceEEEecCCCCc
Confidence 13555554 455555666666652 223456666554
No 146
>PTZ00445 p36-lilke protein; Provisional
Probab=40.20 E-value=47 Score=30.45 Aligned_cols=50 Identities=16% Similarity=0.337 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHCCCeEEEEcCCCCCcHhHHH-hhCCCCChh---------hHHHHHHHHHHHH
Q 016924 61 DFYNNLINELISNGLTPFVTLFHWDTPQALED-EYGGFLSPK---------IVKDFGDYADLCF 114 (380)
Q Consensus 61 ~~y~~~i~~l~~~gi~p~~tL~h~~~P~~l~~-~~ggw~~~~---------~~~~f~~ya~~~~ 114 (380)
+--+.+++.|++.||+.+++= ||. -|.. --|||.++. ....|......+.
T Consensus 29 ~~~~~~v~~L~~~GIk~Va~D--~Dn--TlI~~HsgG~~~~~~~~~~~~~~~tpefk~~~~~l~ 88 (219)
T PTZ00445 29 ESADKFVDLLNECGIKVIASD--FDL--TMITKHSGGYIDPDNDDIRVLTSVTPDFKILGKRLK 88 (219)
T ss_pred HHHHHHHHHHHHcCCeEEEec--chh--hhhhhhcccccCCCcchhhhhccCCHHHHHHHHHHH
Confidence 446889999999999999863 332 2111 128999887 4455666655543
No 147
>PRK08599 coproporphyrinogen III oxidase; Provisional
Probab=40.00 E-value=1.2e+02 Score=29.99 Aligned_cols=96 Identities=18% Similarity=0.235 Sum_probs=55.4
Q ss_pred CcHHHHHHHHHcCCCEEEeccc--cccccccCCCCCCccchHHHHHHHHHHHHHHCCCeEE-EEcCCCCCcHhHHHhhCC
Q 016924 20 RYKEDIALVKQVGFDSIRFSIS--WSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPF-VTLFHWDTPQALEDEYGG 96 (380)
Q Consensus 20 ~~~eDi~l~~~lG~~~~R~si~--W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~-~tL~h~~~P~~l~~~~gg 96 (380)
.-++.+++|+++|++.+-+++. -.++...- ....+ .+-..+.|+.+++.|+..+ +.+ =+++|.
T Consensus 98 l~~e~l~~l~~~G~~rvsiGvqS~~~~~l~~l--~r~~~---~~~~~~~i~~l~~~g~~~v~~dl-i~GlPg-------- 163 (377)
T PRK08599 98 LTKEKLQVLKDSGVNRISLGVQTFNDELLKKI--GRTHN---EEDVYEAIANAKKAGFDNISIDL-IYALPG-------- 163 (377)
T ss_pred CCHHHHHHHHHcCCCEEEEecccCCHHHHHHc--CCCCC---HHHHHHHHHHHHHcCCCcEEEee-ecCCCC--------
Confidence 3578899999999998888773 12333221 12223 3567889999999999743 333 245552
Q ss_pred CCChhhHHHHHHHHHHHHHHhCCcCcEEEecCCCccc
Q 016924 97 FLSPKIVKDFGDYADLCFKEFGDRVKHWITLNEPETV 133 (380)
Q Consensus 97 w~~~~~~~~f~~ya~~~~~~~~~~v~~w~t~NEp~~~ 133 (380)
.+ .+.|.+=.+.+.+.=-+++..+...-+|...
T Consensus 164 -qt---~~~~~~~l~~~~~l~~~~i~~y~l~~~pgT~ 196 (377)
T PRK08599 164 -QT---IEDFKESLAKALALDIPHYSAYSLILEPKTV 196 (377)
T ss_pred -CC---HHHHHHHHHHHHccCCCEEeeeceeecCCCh
Confidence 23 3445544444433223345444444566543
No 148
>cd06570 GH20_chitobiase-like_1 A functionally uncharacterized subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the chitobiase of Serratia marcescens, a beta-N-1,4-acetylhexosaminidase that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This subgroup lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=39.67 E-value=1.1e+02 Score=29.58 Aligned_cols=72 Identities=14% Similarity=0.210 Sum_probs=47.9
Q ss_pred cccCCccc--CcHHHHHHHHHcCCCEEEecc----cccc---ccccCCC----CCCccchHHHHHHHHHHHHHHCCCeEE
Q 016924 12 DVADNFYF--RYKEDIALVKQVGFDSIRFSI----SWSR---ILPHGNI----SGGVNQQGVDFYNNLINELISNGLTPF 78 (380)
Q Consensus 12 ~~a~~~y~--~~~eDi~l~~~lG~~~~R~si----~W~r---i~p~~~~----~g~~n~~~~~~y~~~i~~l~~~gi~p~ 78 (380)
|+|-.++- ..++=|+.|+..++|.+-+-+ +|.- -.|.-+. .+.+.. +-++++++.++++||++|
T Consensus 9 D~aR~f~~~~~ik~~Id~ma~~KlN~lh~HltDd~~~rle~~~~P~lt~~g~~~~~yT~---~di~elv~yA~~rgI~vI 85 (311)
T cd06570 9 DVSRHFIPVAVIKRQLDAMASVKLNVFHWHLTDDQGFRIESKKYPKLQQKASDGLYYTQ---EQIREVVAYARDRGIRVV 85 (311)
T ss_pred ecCCCCcCHHHHHHHHHHHHHhCCeEEEEEEecCCCceeecCCCccccccCCCCCccCH---HHHHHHHHHHHHcCCEEE
Confidence 44444432 144558999999999887766 5632 2343210 124554 457999999999999999
Q ss_pred EEcCCCCCcHh
Q 016924 79 VTLFHWDTPQA 89 (380)
Q Consensus 79 ~tL~h~~~P~~ 89 (380)
.-+ |+|..
T Consensus 86 PEI---d~PGH 93 (311)
T cd06570 86 PEI---DVPGH 93 (311)
T ss_pred Eee---cCccc
Confidence 886 77754
No 149
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=39.62 E-value=1.8e+02 Score=28.78 Aligned_cols=88 Identities=18% Similarity=0.225 Sum_probs=60.6
Q ss_pred CcccCCcccCcHHHHHHHHHcCCCEEEeccccccccccCCCCCCccchHHHHHHHHHHHHHHCCCeEEEEcCCCCCcHhH
Q 016924 11 GDVADNFYFRYKEDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFHWDTPQAL 90 (380)
Q Consensus 11 ~~~a~~~y~~~~eDi~l~~~lG~~~~R~si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~~tL~h~~~P~~l 90 (380)
+-+|.=||+ |+--+ ...+.|++.+| |-|-. -|... +..+.+++.++++|+-.=+...|=.++.-+
T Consensus 82 PlvADIHFd-~~lAl-~a~~~G~~~iR-------INPGN--ig~~~----~~v~~vv~~ak~~~ipIRIGvN~GSL~~~~ 146 (360)
T PRK00366 82 PLVADIHFD-YRLAL-AAAEAGADALR-------INPGN--IGKRD----ERVREVVEAAKDYGIPIRIGVNAGSLEKDL 146 (360)
T ss_pred CEEEecCCC-HHHHH-HHHHhCCCEEE-------ECCCC--CCchH----HHHHHHHHHHHHCCCCEEEecCCccChHHH
Confidence 445666653 23222 23467899885 44532 12222 568999999999999999999999999999
Q ss_pred HHhhCCCCChhhHHHHHHHHHHH
Q 016924 91 EDEYGGFLSPKIVKDFGDYADLC 113 (380)
Q Consensus 91 ~~~~ggw~~~~~~~~f~~ya~~~ 113 (380)
.++||+-..+..++.-.++++.+
T Consensus 147 ~~~yg~~t~eamveSAl~~~~~l 169 (360)
T PRK00366 147 LEKYGEPTPEALVESALRHAKIL 169 (360)
T ss_pred HHHcCCCCHHHHHHHHHHHHHHH
Confidence 99986644455666666676654
No 150
>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.
Probab=39.33 E-value=79 Score=34.26 Aligned_cols=56 Identities=13% Similarity=0.236 Sum_probs=36.2
Q ss_pred HHHHHHcCCCEEEecc--cccc--------------ccccCCCCCCccc-----hHHHHHHHHHHHHHHCCCeEEEEcC
Q 016924 25 IALVKQVGFDSIRFSI--SWSR--------------ILPHGNISGGVNQ-----QGVDFYNNLINELISNGLTPFVTLF 82 (380)
Q Consensus 25 i~l~~~lG~~~~R~si--~W~r--------------i~p~~~~~g~~n~-----~~~~~y~~~i~~l~~~gi~p~~tL~ 82 (380)
|+-+|+||++++=+.= +... --|... -.++. ..++=+++||++|.++||++|+.+-
T Consensus 190 LdyLk~LGvtaI~L~Pi~~~~~~~~~~~~~~~~ywGYd~~~y--~a~d~~y~~~g~~~efk~LV~~~H~~GI~VIlDvV 266 (688)
T TIGR02100 190 IDYLKKLGVTAVELLPVHAFIDDRHLLEKGLRNYWGYNTLGF--FAPEPRYLASGQVAEFKTMVRALHDAGIEVILDVV 266 (688)
T ss_pred hHHHHHcCCCEEEECCcccCCccccccccCCCCccCcCcccc--cccChhhcCCCCHHHHHHHHHHHHHCCCEEEEEEC
Confidence 7899999999997762 2110 001100 01111 1245689999999999999999853
No 151
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=39.31 E-value=3.7e+02 Score=26.11 Aligned_cols=31 Identities=13% Similarity=0.137 Sum_probs=29.2
Q ss_pred CCccchHHHHHHHHHHHHHHCCCeEEEEcCC
Q 016924 53 GGVNQQGVDFYNNLINELISNGLTPFVTLFH 83 (380)
Q Consensus 53 g~~n~~~~~~y~~~i~~l~~~gi~p~~tL~h 83 (380)
+-++.+-+..++++.+.++++|-+.++=|+|
T Consensus 74 ~~~~d~~i~~~~~l~~~vh~~G~~~~~Ql~h 104 (338)
T cd04733 74 VLESGEDLEAFREWAAAAKANGALIWAQLNH 104 (338)
T ss_pred ccCCHHHHHHHHHHHHHHHhcCCEEEEEccC
Confidence 6678888999999999999999999999999
No 152
>PLN02389 biotin synthase
Probab=39.20 E-value=88 Score=31.26 Aligned_cols=57 Identities=18% Similarity=0.144 Sum_probs=42.4
Q ss_pred CcHHHHHHHHHcCCCEEEecccccc-ccccCCCCCCccchHHHHHHHHHHHHHHCCCeEEEEc
Q 016924 20 RYKEDIALVKQVGFDSIRFSISWSR-ILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTL 81 (380)
Q Consensus 20 ~~~eDi~l~~~lG~~~~R~si~W~r-i~p~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~~tL 81 (380)
.-+|.++.||+.|++.|-.+++=++ ++|.- ...- .++..-+.++.+++.||++..++
T Consensus 176 l~~E~l~~LkeAGld~~~~~LeTs~~~y~~i--~~~~---s~e~rl~ti~~a~~~Gi~v~sg~ 233 (379)
T PLN02389 176 LEKEQAAQLKEAGLTAYNHNLDTSREYYPNV--ITTR---SYDDRLETLEAVREAGISVCSGG 233 (379)
T ss_pred CCHHHHHHHHHcCCCEEEeeecCChHHhCCc--CCCC---CHHHHHHHHHHHHHcCCeEeEEE
Confidence 5689999999999999999885222 44442 1112 34667889999999999987765
No 153
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=38.13 E-value=1.2e+02 Score=28.71 Aligned_cols=73 Identities=14% Similarity=0.028 Sum_probs=52.0
Q ss_pred cCCcccCcHHHHHHHHHcCCCEEEeccccccccccCCCCCCccchHHHHHHHHHHHHHHCCCeEEEEcCCCCCcHhHH
Q 016924 14 ADNFYFRYKEDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFHWDTPQALE 91 (380)
Q Consensus 14 a~~~y~~~~eDi~l~~~lG~~~~R~si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~~tL~h~~~P~~l~ 91 (380)
+.+..+...+-.+.+|++|++.+|-++.=+|--|.+. .| + +.+.+..+-+.+.+.||..+.+.++-..+..+.
T Consensus 36 sie~~~~~~~~A~~lk~~g~~~~r~~~~kpRTs~~s~-~G-~---g~~gl~~l~~~~~~~Gl~~~te~~d~~~~~~l~ 108 (266)
T PRK13398 36 AVESEEQMVKVAEKLKELGVHMLRGGAFKPRTSPYSF-QG-L---GEEGLKILKEVGDKYNLPVVTEVMDTRDVEEVA 108 (266)
T ss_pred cCCCHHHHHHHHHHHHHcCCCEEEEeeecCCCCCCcc-CC-c---HHHHHHHHHHHHHHcCCCEEEeeCChhhHHHHH
Confidence 3556666777789999999999999975566666542 12 2 235566677778999999999987655554443
No 154
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=37.72 E-value=56 Score=30.91 Aligned_cols=82 Identities=10% Similarity=0.005 Sum_probs=54.7
Q ss_pred HHHHHHHHHcCCCEEEeccccccccccCCCCCCccchHHHHHHHHHHHHHHCCCeEEEEcCCCCCcHhHHHhhCCCCChh
Q 016924 22 KEDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFHWDTPQALEDEYGGFLSPK 101 (380)
Q Consensus 22 ~eDi~l~~~lG~~~~R~si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~~tL~h~~~P~~l~~~~ggw~~~~ 101 (380)
..+++++++.|++.+|+.++=|...-... -+.-.++.++...+.++.+++.|+++.++.-+| .+ +. +.
T Consensus 81 ~~~~~~a~~~g~~~i~i~~~~sd~~~~~~-~~~~~~~~~~~~~~~i~~ak~~G~~v~~~~~~~------~d--~~---~~ 148 (273)
T cd07941 81 DPNLQALLEAGTPVVTIFGKSWDLHVTEA-LGTTLEENLAMIRDSVAYLKSHGREVIFDAEHF------FD--GY---KA 148 (273)
T ss_pred hHHHHHHHhCCCCEEEEEEcCCHHHHHHH-cCCCHHHHHHHHHHHHHHHHHcCCeEEEeEEec------cc--cC---CC
Confidence 35789999999999999886444322110 133345678899999999999999998876554 11 11 12
Q ss_pred hHHHHHHHHHHHHH
Q 016924 102 IVKDFGDYADLCFK 115 (380)
Q Consensus 102 ~~~~f~~ya~~~~~ 115 (380)
..+.+.++++.+.+
T Consensus 149 ~~~~~~~~~~~~~~ 162 (273)
T cd07941 149 NPEYALATLKAAAE 162 (273)
T ss_pred CHHHHHHHHHHHHh
Confidence 34556677776654
No 155
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=36.12 E-value=45 Score=31.08 Aligned_cols=60 Identities=10% Similarity=0.009 Sum_probs=39.5
Q ss_pred ccCcHHHHHHHHHcCCCEEEeccccccccccCCCCCCccchHHHHHHHHHHHHHHCCCeEEEE
Q 016924 18 YFRYKEDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVT 80 (380)
Q Consensus 18 y~~~~eDi~l~~~lG~~~~R~si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~~t 80 (380)
...++.-+++.+.+|.+.+++........+.. ...-+..++.++.+.+.+.++||+..+=
T Consensus 89 ~~~~~~~i~~a~~lGa~~i~~~~~~~~~~~~~---~~~~~~~~~~l~~l~~~a~~~gv~l~iE 148 (275)
T PRK09856 89 LDMIKLAMDMAKEMNAGYTLISAAHAGYLTPP---NVIWGRLAENLSELCEYAENIGMDLILE 148 (275)
T ss_pred HHHHHHHHHHHHHhCCCEEEEcCCCCCCCCCH---HHHHHHHHHHHHHHHHHHHHcCCEEEEe
Confidence 34555667899999999999964322111111 1112345677889999999999977654
No 156
>TIGR02104 pulA_typeI pullulanase, type I. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.
Probab=36.12 E-value=85 Score=33.37 Aligned_cols=23 Identities=17% Similarity=0.372 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHCCCeEEEEcC
Q 016924 60 VDFYNNLINELISNGLTPFVTLF 82 (380)
Q Consensus 60 ~~~y~~~i~~l~~~gi~p~~tL~ 82 (380)
++=+++||++|.++||++|+.+-
T Consensus 228 ~~efk~lV~~~H~~Gi~VilDvV 250 (605)
T TIGR02104 228 IRELKQMIQALHENGIRVIMDVV 250 (605)
T ss_pred HHHHHHHHHHHHHCCCEEEEEEE
Confidence 45689999999999999999753
No 157
>PRK09249 coproporphyrinogen III oxidase; Provisional
Probab=35.39 E-value=1.4e+02 Score=30.42 Aligned_cols=78 Identities=12% Similarity=0.256 Sum_probs=47.3
Q ss_pred CcHHHHHHHHHcCCCEEEeccc-cc-cccccCCCCCCccchHHHHHHHHHHHHHHCCC-eEEEEcCCCCCcHhHHHhhCC
Q 016924 20 RYKEDIALVKQVGFDSIRFSIS-WS-RILPHGNISGGVNQQGVDFYNNLINELISNGL-TPFVTLFHWDTPQALEDEYGG 96 (380)
Q Consensus 20 ~~~eDi~l~~~lG~~~~R~si~-W~-ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~gi-~p~~tL~h~~~P~~l~~~~gg 96 (380)
.-+|.+++|+++|++.+.+++. =+ ++.-.- ...- ..+-..+.++.+++.|+ .+.++|. +++|.
T Consensus 149 lt~e~l~~l~~aG~~risiGvqS~~~~~L~~l--~r~~---~~~~~~~ai~~l~~~G~~~v~~dli-~GlPg-------- 214 (453)
T PRK09249 149 LDLEMLDALRELGFNRLSLGVQDFDPEVQKAV--NRIQ---PFEFTFALVEAARELGFTSINIDLI-YGLPK-------- 214 (453)
T ss_pred CCHHHHHHHHHcCCCEEEECCCCCCHHHHHHh--CCCC---CHHHHHHHHHHHHHcCCCcEEEEEE-ccCCC--------
Confidence 3578899999999998888874 11 111111 1112 23556788999999999 4555553 45552
Q ss_pred CCChhhHHHHHHHHHHHHH
Q 016924 97 FLSPKIVKDFGDYADLCFK 115 (380)
Q Consensus 97 w~~~~~~~~f~~ya~~~~~ 115 (380)
++.+.|.+-.+.+.+
T Consensus 215 ----qt~e~~~~~l~~~~~ 229 (453)
T PRK09249 215 ----QTPESFARTLEKVLE 229 (453)
T ss_pred ----CCHHHHHHHHHHHHh
Confidence 234555555555544
No 158
>COG0366 AmyA Glycosidases [Carbohydrate transport and metabolism]
Probab=35.29 E-value=70 Score=32.45 Aligned_cols=59 Identities=20% Similarity=0.257 Sum_probs=39.7
Q ss_pred HHHHHHHHcCCCEEEecc------ccccccccCCCCCCc--cchHHHHHHHHHHHHHHCCCeEEEEc--CC
Q 016924 23 EDIALVKQVGFDSIRFSI------SWSRILPHGNISGGV--NQQGVDFYNNLINELISNGLTPFVTL--FH 83 (380)
Q Consensus 23 eDi~l~~~lG~~~~R~si------~W~ri~p~~~~~g~~--n~~~~~~y~~~i~~l~~~gi~p~~tL--~h 83 (380)
+-++.+++||++++=++= ++.+--.... -.+ ....++-.+++++++.++||++++.+ .|
T Consensus 33 ~~LdYl~~LGv~aiwl~Pi~~s~~~~~gY~~~Dy--~~id~~~Gt~~d~~~li~~~H~~gi~vi~D~V~NH 101 (505)
T COG0366 33 EKLDYLKELGVDAIWLSPIFESPQADHGYDVSDY--TKVDPHFGTEEDFKELVEEAHKRGIKVILDLVFNH 101 (505)
T ss_pred HhhhHHHHhCCCEEEeCCCCCCCccCCCccccch--hhcCcccCCHHHHHHHHHHHHHCCCEEEEEeccCc
Confidence 668899999999985541 1111111110 111 23456778999999999999999987 55
No 159
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=34.84 E-value=4.4e+02 Score=25.71 Aligned_cols=33 Identities=18% Similarity=0.347 Sum_probs=29.6
Q ss_pred CCccchHHHHHHHHHHHHHHCCCeEEEEcCCCC
Q 016924 53 GGVNQQGVDFYNNLINELISNGLTPFVTLFHWD 85 (380)
Q Consensus 53 g~~n~~~~~~y~~~i~~l~~~gi~p~~tL~h~~ 85 (380)
+-++.+.+..++++.+.++++|-+.++=|+|..
T Consensus 69 ~l~~d~~i~~lr~la~~vh~~ga~~~~QL~H~G 101 (338)
T cd02933 69 GIYTDEQVEGWKKVTDAVHAKGGKIFLQLWHVG 101 (338)
T ss_pred ccCCHHHHHHHHHHHHHHHhcCCeEEEEcccCc
Confidence 556788899999999999999999999999943
No 160
>PRK05660 HemN family oxidoreductase; Provisional
Probab=34.74 E-value=1.5e+02 Score=29.42 Aligned_cols=95 Identities=17% Similarity=0.201 Sum_probs=59.0
Q ss_pred CcHHHHHHHHHcCCCEEEeccc-cc-cccccCCCCCCccchHHHHHHHHHHHHHHCCCeEE-EEcCCCCCcHhHHHhhCC
Q 016924 20 RYKEDIALVKQVGFDSIRFSIS-WS-RILPHGNISGGVNQQGVDFYNNLINELISNGLTPF-VTLFHWDTPQALEDEYGG 96 (380)
Q Consensus 20 ~~~eDi~l~~~lG~~~~R~si~-W~-ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~-~tL~h~~~P~~l~~~~gg 96 (380)
.-++.++.|+++|++.+-++|. =+ ++.-.- |... ..+-..+.|+.+++.|++++ ++|. +++|.
T Consensus 105 l~~e~l~~Lk~~Gv~risiGvqS~~~~~L~~l---~r~~--~~~~~~~ai~~~~~~G~~~v~~dli-~Glpg-------- 170 (378)
T PRK05660 105 VEADRFVGYQRAGVNRISIGVQSFSEEKLKRL---GRIH--GPDEAKRAAKLAQGLGLRSFNLDLM-HGLPD-------- 170 (378)
T ss_pred CCHHHHHHHHHcCCCEEEeccCcCCHHHHHHh---CCCC--CHHHHHHHHHHHHHcCCCeEEEEee-cCCCC--------
Confidence 3468999999999997777773 21 222111 1111 23445777899999999874 5553 45552
Q ss_pred CCChhhHHHHHHHHHHHHHHhCCcCcEEEecCCCcc
Q 016924 97 FLSPKIVKDFGDYADLCFKEFGDRVKHWITLNEPET 132 (380)
Q Consensus 97 w~~~~~~~~f~~ya~~~~~~~~~~v~~w~t~NEp~~ 132 (380)
++.+.|.+-.+.+.+-=-+++..+...=||..
T Consensus 171 ----qt~~~~~~~l~~~~~l~p~~is~y~l~~~~gT 202 (378)
T PRK05660 171 ----QSLEEALDDLRQAIALNPPHLSWYQLTIEPNT 202 (378)
T ss_pred ----CCHHHHHHHHHHHHhcCCCeEEeeccEeccCC
Confidence 24556666666665544567777766666653
No 161
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=34.66 E-value=1.5e+02 Score=27.80 Aligned_cols=79 Identities=14% Similarity=0.010 Sum_probs=52.9
Q ss_pred HHHHHHHHHcC----CCEEEeccccccccccCCCCCCccchHHHHHHHHHHHHHHCCCeEEEEcCCCCCcHhHHHhhCCC
Q 016924 22 KEDIALVKQVG----FDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFHWDTPQALEDEYGGF 97 (380)
Q Consensus 22 ~eDi~l~~~lG----~~~~R~si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~~tL~h~~~P~~l~~~~ggw 97 (380)
.+|++++.+.| ++.+|+.++.|.+.-... -+.-..+.++-..+.+..+++.|+++.+++.+ .+-
T Consensus 72 ~~~v~~a~~~~~~~~~~~i~i~~~~s~~~~~~~-~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~-----------~~~ 139 (268)
T cd07940 72 KKDIDAAAEALKPAKVDRIHTFIATSDIHLKYK-LKKTREEVLERAVEAVEYAKSHGLDVEFSAED-----------ATR 139 (268)
T ss_pred HhhHHHHHHhCCCCCCCEEEEEecCCHHHHHHH-hCCCHHHHHHHHHHHHHHHHHcCCeEEEeeec-----------CCC
Confidence 78999999999 999999876655532110 02222356788889999999999998755421 222
Q ss_pred CChhhHHHHHHHHHHHHH
Q 016924 98 LSPKIVKDFGDYADLCFK 115 (380)
Q Consensus 98 ~~~~~~~~f~~ya~~~~~ 115 (380)
. ..+.+.+.++.+.+
T Consensus 140 ~---~~~~~~~~~~~~~~ 154 (268)
T cd07940 140 T---DLDFLIEVVEAAIE 154 (268)
T ss_pred C---CHHHHHHHHHHHHH
Confidence 2 34566777776643
No 162
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=34.42 E-value=49 Score=28.89 Aligned_cols=63 Identities=14% Similarity=0.044 Sum_probs=41.4
Q ss_pred ccCcHHHHHHHHHcCCCEEEeccccccccccCCCCCCccchHHHHHHHHHHHHHHCCCeEEEEc
Q 016924 18 YFRYKEDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTL 81 (380)
Q Consensus 18 y~~~~eDi~l~~~lG~~~~R~si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~~tL 81 (380)
....++-+++++.+|++.+++...+-...+... ....-...++.++.+.+.+.++|+++.+=-
T Consensus 70 ~~~~~~~i~~a~~lg~~~i~~~~g~~~~~~~~~-~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~ 132 (213)
T PF01261_consen 70 LEYLKKAIDLAKRLGAKYIVVHSGRYPSGPEDD-TEENWERLAENLRELAEIAEEYGVRIALEN 132 (213)
T ss_dssp HHHHHHHHHHHHHHTBSEEEEECTTESSSTTSS-HHHHHHHHHHHHHHHHHHHHHHTSEEEEE-
T ss_pred HHHHHHHHHHHHHhCCCceeecCcccccccCCC-HHHHHHHHHHHHHHHHhhhhhhcceEEEec
Confidence 456678899999999999999976411111110 011112346778888888999998877653
No 163
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=34.30 E-value=75 Score=29.78 Aligned_cols=60 Identities=10% Similarity=0.096 Sum_probs=39.3
Q ss_pred cCcHHHHHHHHHcCCCEEEeccccccccccCCCCCCccchHHHHHHHHHHHHHHCCCeEEEEc
Q 016924 19 FRYKEDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTL 81 (380)
Q Consensus 19 ~~~~eDi~l~~~lG~~~~R~si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~~tL 81 (380)
.+++.-+++++++|.+.++++-. +..+... ....-...++.++++++.+.++||++.+=.
T Consensus 94 ~~~~~~i~~a~~lG~~~v~~~~~--~~~~~~~-~~~~~~~~~~~l~~l~~~A~~~Gv~l~lE~ 153 (279)
T TIGR00542 94 EIMEKAIQLARDLGIRTIQLAGY--DVYYEEH-DEETRRRFREGLKEAVELAARAQVTLAVEI 153 (279)
T ss_pred HHHHHHHHHHHHhCCCEEEecCc--ccccCcC-CHHHHHHHHHHHHHHHHHHHHcCCEEEEee
Confidence 34667789999999999998531 1111110 011122346778889999999999888754
No 164
>PRK07106 5-aminoimidazole-4-carboxamide ribonucleotide transformylase; Provisional
Probab=34.27 E-value=61 Score=32.28 Aligned_cols=52 Identities=21% Similarity=0.401 Sum_probs=43.7
Q ss_pred CcccCCcccCcHHHHHHHHHcCCCEEEeccccccccccCCCCCCccchHHHHHHHHHHHHHHCCCeEEEE
Q 016924 11 GDVADNFYFRYKEDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVT 80 (380)
Q Consensus 11 ~~~a~~~y~~~~eDi~l~~~lG~~~~R~si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~~t 80 (380)
.-+|+|-+..+++-|+..++.|++++ |+|-| .++- +++|+.+-++||..+.|
T Consensus 332 ~vlASDAFFPF~D~Id~Aa~~GV~aI--------iQPGG----SiRD------~evI~aane~giaMvfT 383 (390)
T PRK07106 332 VALGSDAFFPFGDNIERAAKSGVKYI--------AQPGG----SIRD------DNVIETCNKYGMTMAFT 383 (390)
T ss_pred eEEEecccCCCCchHHHHHHcCCEEE--------ECCCC----CCCc------HHHHHHHHHhCCEEEEC
Confidence 34678999999999999999999976 67865 4543 78999999999998876
No 165
>PRK08208 coproporphyrinogen III oxidase; Validated
Probab=34.20 E-value=1.5e+02 Score=29.99 Aligned_cols=62 Identities=13% Similarity=0.223 Sum_probs=40.4
Q ss_pred CcHHHHHHHHHcCCCEEEeccc-c-ccccccCCCCCCccchHHHHHHHHHHHHHHCCCeEE-EEcCCCCCc
Q 016924 20 RYKEDIALVKQVGFDSIRFSIS-W-SRILPHGNISGGVNQQGVDFYNNLINELISNGLTPF-VTLFHWDTP 87 (380)
Q Consensus 20 ~~~eDi~l~~~lG~~~~R~si~-W-~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~-~tL~h~~~P 87 (380)
.-++.+++|+++|++.+.+++. = .++.-.- |.-. ..+-..+.|+.|++.|+..+ ++|. +++|
T Consensus 139 lt~e~l~~l~~~G~~rvslGvQS~~~~~L~~l---~R~~--~~~~~~~ai~~l~~~g~~~i~~dlI-~GlP 203 (430)
T PRK08208 139 TTAEKLALLAARGVNRLSIGVQSFHDSELHAL---HRPQ--KRADVHQALEWIRAAGFPILNIDLI-YGIP 203 (430)
T ss_pred CCHHHHHHHHHcCCCEEEEecccCCHHHHHHh---CCCC--CHHHHHHHHHHHHHcCCCeEEEEee-cCCC
Confidence 3468899999999998777773 2 1232221 2211 23557889999999999864 5543 4555
No 166
>cd02929 TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) and histamine dehydrogenase (HD) FMN-binding domain. TMADH is an iron-sulfur flavoprotein that catalyzes the oxidative demethylation of trimethylamine to form dimethylamine and formaldehyde. The protein forms a symetrical dimer with each subunit containing one 4Fe-4S cluster and one FMN cofactor. It contains a unique flavin, in the form of a 6-S-cysteinyl FMN which is bent by ~25 degrees along the N5-N10 axis of the flavin isoalloxazine ring. This modification of the conformation of the flavin is thought to facilitate catalysis.The closely related histamine dehydrogenase catalyzes oxidative deamination of histamine.
Probab=33.45 E-value=4.9e+02 Score=25.77 Aligned_cols=130 Identities=14% Similarity=0.106 Sum_probs=74.3
Q ss_pred CCccchHHHHHHHHHHHHHHCCCeEEEEcCCCCC-------------cHhHHHhh--CC------CCC---hhhHHHHHH
Q 016924 53 GGVNQQGVDFYNNLINELISNGLTPFVTLFHWDT-------------PQALEDEY--GG------FLS---PKIVKDFGD 108 (380)
Q Consensus 53 g~~n~~~~~~y~~~i~~l~~~gi~p~~tL~h~~~-------------P~~l~~~~--gg------w~~---~~~~~~f~~ 108 (380)
+-++.+-+.-++++++.++++|-+.++=|+|-.- |.-+.... +. ... .++++.|++
T Consensus 75 ~l~~d~~i~~~~~l~~~vh~~G~~i~~QL~H~G~~~~~~~~~~~~~~ps~~~~~~~~~~~~~p~~mt~~eI~~ii~~f~~ 154 (370)
T cd02929 75 RLWDDGDIRNLAAMTDAVHKHGALAGIELWHGGAHAPNRESRETPLGPSQLPSEFPTGGPVQAREMDKDDIKRVRRWYVD 154 (370)
T ss_pred CcCCHHHHHHHHHHHHHHHHCCCeEEEecccCCCCCCccCCCCCccCCCCCCCCccccCCCCCccCCHHHHHHHHHHHHH
Confidence 6778889999999999999999999999999431 00000000 00 111 237788888
Q ss_pred HHHHHHHHhCCcCcEEEecCCCccccccccccCccC-CC--CCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHH
Q 016924 109 YADLCFKEFGDRVKHWITLNEPETVGECGYAKGTKA-PG--RCSNYIGNCPAGNSATEPYVAAHHLILSHATAVKLYRQN 185 (380)
Q Consensus 109 ya~~~~~~~~~~v~~w~t~NEp~~~~~~gy~~g~~~-Pg--~~~~~~~~~~~~~~~~~~~~~~h~~l~Aha~a~~~~~~~ 185 (380)
=|+.+.+.=-|-|. +.+-.||+...|- |. .+.+.+ |-+ +-|-+.--...++.+|+.
T Consensus 155 AA~ra~~aGfDgVE---------ih~ahGyLl~QFlSp~~N~RtD~y-----GGs-------lenR~Rf~~eii~aIr~~ 213 (370)
T cd02929 155 AALRARDAGFDIVY---------VYAAHGYLPLQFLLPRYNKRTDEY-----GGS-------LENRARFWRETLEDTKDA 213 (370)
T ss_pred HHHHHHHcCCCEEE---------EcccccchHHHhhCccccCCcccc-----CCC-------hHhhhHHHHHHHHHHHHH
Confidence 66665543223232 3455678876653 32 111111 111 123333334667777776
Q ss_pred hhcCCCccEEEEecCCcccc
Q 016924 186 YQASQNGLIGITVSSIWAVP 205 (380)
Q Consensus 186 ~~~~~~~~iG~~~~~~~~~P 205 (380)
. .++-.||+-++..-..|
T Consensus 214 v--g~~~~v~vRls~~~~~~ 231 (370)
T cd02929 214 V--GDDCAVATRFSVDELIG 231 (370)
T ss_pred c--CCCceEEEEecHHHhcC
Confidence 4 24567898888655444
No 167
>cd07947 DRE_TIM_Re_CS Clostridium kluyveri Re-citrate synthase and related proteins, catalytic TIM barrel domain. Re-citrate synthase (Re-CS) is a Clostridium kluyveri enzyme that converts acetyl-CoA and oxaloacetate to citrate. In most organisms, this reaction is catalyzed by Si-citrate synthase which is Si-face stereospecific with respect to C-2 of oxaloacetate, and phylogenetically unrelated to Re-citrate synthase. Re-citrate synthase is also found in a few other strictly anaerobic organisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with
Probab=33.13 E-value=71 Score=30.44 Aligned_cols=63 Identities=22% Similarity=0.332 Sum_probs=49.6
Q ss_pred ccCcHHHHHHHHHcCCCEEEeccccccccccCCCCCCccchHHHHHHHHHHHHHHCCCeEEEEc
Q 016924 18 YFRYKEDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTL 81 (380)
Q Consensus 18 y~~~~eDi~l~~~lG~~~~R~si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~~tL 81 (380)
-.--.+|++...+.|++.+-+.++=|..+-... -+.--++.++.+.+++..++++|+++-+++
T Consensus 73 ~r~~~~die~A~~~g~~~v~i~~s~S~~~~~~~-~~~t~~e~l~~~~~~v~~a~~~g~~v~~~~ 135 (279)
T cd07947 73 IRANKEDLKLVKEMGLKETGILMSVSDYHIFKK-LKMTREEAMEKYLEIVEEALDHGIKPRCHL 135 (279)
T ss_pred ecCCHHHHHHHHHcCcCEEEEEEcCCHHHHHHH-hCcCHHHHHHHHHHHHHHHHHCCCeEEEEE
Confidence 334689999999999999998887655543321 134456789999999999999999999888
No 168
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=33.00 E-value=1.5e+02 Score=30.25 Aligned_cols=87 Identities=15% Similarity=0.250 Sum_probs=50.1
Q ss_pred CcHHHHHHHHHcCCCEEEeccc-cc-cccccCCCCCCccchHHHHHHHHHHHHHHCCCe-EEEEcCCCCCcHhHHHhhCC
Q 016924 20 RYKEDIALVKQVGFDSIRFSIS-WS-RILPHGNISGGVNQQGVDFYNNLINELISNGLT-PFVTLFHWDTPQALEDEYGG 96 (380)
Q Consensus 20 ~~~eDi~l~~~lG~~~~R~si~-W~-ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~gi~-p~~tL~h~~~P~~l~~~~gg 96 (380)
.-+|.+++|+++|++.+-+++. =+ .+.-.- ....+ .+-..+.|+.+++.|++ +-++|. +++|.
T Consensus 150 lt~e~l~~L~~~G~~rvsiGvQS~~~~vl~~l--~R~~~---~~~~~~ai~~lr~~G~~~v~~dli-~GlPg-------- 215 (453)
T PRK13347 150 VTAEMLQALAALGFNRASFGVQDFDPQVQKAI--NRIQP---EEMVARAVELLRAAGFESINFDLI-YGLPH-------- 215 (453)
T ss_pred CCHHHHHHHHHcCCCEEEECCCCCCHHHHHHh--CCCCC---HHHHHHHHHHHHhcCCCcEEEeEE-EeCCC--------
Confidence 3578899999999997777763 11 122111 01122 35567889999999997 445553 44552
Q ss_pred CCChhhHHHHHHHHHHHHHHhCCcCcEE
Q 016924 97 FLSPKIVKDFGDYADLCFKEFGDRVKHW 124 (380)
Q Consensus 97 w~~~~~~~~f~~ya~~~~~~~~~~v~~w 124 (380)
++.+.|.+-.+.+.+.=-+++..+
T Consensus 216 ----qt~e~~~~tl~~~~~l~p~~i~~y 239 (453)
T PRK13347 216 ----QTVESFRETLDKVIALSPDRIAVF 239 (453)
T ss_pred ----CCHHHHHHHHHHHHhcCCCEEEEe
Confidence 234556555555543222344433
No 169
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=32.78 E-value=94 Score=29.08 Aligned_cols=47 Identities=17% Similarity=0.274 Sum_probs=38.7
Q ss_pred cHHHHHHHHHcCCCEEEeccccccccccCCCCCCccchHHHHHHHHHHHHHHCCCeEEEEcC
Q 016924 21 YKEDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLF 82 (380)
Q Consensus 21 ~~eDi~l~~~lG~~~~R~si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~~tL~ 82 (380)
..+|++..++.|++.+|+.++.+.+ .-..+.++.+++.|+++.+++.
T Consensus 87 ~~~~i~~a~~~g~~~iri~~~~s~~---------------~~~~~~i~~ak~~G~~v~~~~~ 133 (263)
T cd07943 87 TVDDLKMAADLGVDVVRVATHCTEA---------------DVSEQHIGAARKLGMDVVGFLM 133 (263)
T ss_pred CHHHHHHHHHcCCCEEEEEechhhH---------------HHHHHHHHHHHHCCCeEEEEEE
Confidence 3799999999999999998765533 1257789999999999999984
No 170
>PRK12755 phospho-2-dehydro-3-deoxyheptonate aldolase; Provisional
Probab=32.75 E-value=1.6e+02 Score=29.13 Aligned_cols=79 Identities=18% Similarity=0.264 Sum_probs=55.2
Q ss_pred cCCcccCcHHHHHHHHHcCCC-------EEE-------eccccccccccCCCCCCcc-chHHHHHHHHHHHHHHCCCeEE
Q 016924 14 ADNFYFRYKEDIALVKQVGFD-------SIR-------FSISWSRILPHGNISGGVN-QQGVDFYNNLINELISNGLTPF 78 (380)
Q Consensus 14 a~~~y~~~~eDi~l~~~lG~~-------~~R-------~si~W~ri~p~~~~~g~~n-~~~~~~y~~~i~~l~~~gi~p~ 78 (380)
+.+..+.-.|-.+.+|++|-+ ..| .+..|.-+.-++.++|.+| .+||...++++-++.+.|+...
T Consensus 63 SI~d~~~aleyA~~Lk~l~~~~~d~l~ivmR~y~eKPRT~~gwkGli~DP~ldgs~~i~~GL~~~R~ll~~~~e~Glp~a 142 (353)
T PRK12755 63 SIHDPEAALEYARRLKALADELSDRLLIVMRVYFEKPRTTVGWKGLINDPHLDGSFDIEEGLRIARKLLLDLVELGLPLA 142 (353)
T ss_pred CCCCHHHHHHHHHHHHHHHhhhhcceEEEEEeccccCCCCcCCcCCCCCccccccccHHHHHHHHHHHHHHHHHhCCCEE
Confidence 344445555666777777765 555 7788888875544468887 8999999999888999999776
Q ss_pred EEcCCCCCcHhHHH
Q 016924 79 VTLFHWDTPQALED 92 (380)
Q Consensus 79 ~tL~h~~~P~~l~~ 92 (380)
--+..-..|+.+.+
T Consensus 143 tE~ld~~~~~y~~D 156 (353)
T PRK12755 143 TEALDPISPQYLGD 156 (353)
T ss_pred EEecCcccHHHHHh
Confidence 55554445555544
No 171
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=32.72 E-value=1.5e+02 Score=27.03 Aligned_cols=80 Identities=18% Similarity=0.127 Sum_probs=54.6
Q ss_pred HHHHHH----HHHcCCCEEEeccccccccccCCCCCCccchHHHHHHHHHHHHHHCCCeEEEEcCCCCCcHhHHHhhCCC
Q 016924 22 KEDIAL----VKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFHWDTPQALEDEYGGF 97 (380)
Q Consensus 22 ~eDi~l----~~~lG~~~~R~si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~~tL~h~~~P~~l~~~~ggw 97 (380)
++|++. +++.|++.+|+.++=+....... -+.--++.++...++++.+++.|+++.+++-+..
T Consensus 66 ~~~i~~~~~~~~~~g~~~i~i~~~~s~~~~~~~-~~~~~~~~~~~~~~~v~~ak~~g~~v~~~~~~~~------------ 132 (237)
T PF00682_consen 66 EEDIERAVEAAKEAGIDIIRIFISVSDLHIRKN-LNKSREEALERIEEAVKYAKELGYEVAFGCEDAS------------ 132 (237)
T ss_dssp HHHHHHHHHHHHHTTSSEEEEEEETSHHHHHHH-TCSHHHHHHHHHHHHHHHHHHTTSEEEEEETTTG------------
T ss_pred HHHHHHHHHhhHhccCCEEEecCcccHHHHHHh-hcCCHHHHHHHHHHHHHHHHhcCCceEeCccccc------------
Confidence 455555 45699999999987555433221 1344456788899999999999999988875432
Q ss_pred CChhhHHHHHHHHHHHHHH
Q 016924 98 LSPKIVKDFGDYADLCFKE 116 (380)
Q Consensus 98 ~~~~~~~~f~~ya~~~~~~ 116 (380)
+...+.+.++++.+.+.
T Consensus 133 --~~~~~~~~~~~~~~~~~ 149 (237)
T PF00682_consen 133 --RTDPEELLELAEALAEA 149 (237)
T ss_dssp --GSSHHHHHHHHHHHHHH
T ss_pred --cccHHHHHHHHHHHHHc
Confidence 12346677777777555
No 172
>TIGR01212 radical SAM protein, TIGR01212 family. This uncharacterized protein family shows significant similarity to TIGR01211, a longer protein that is a histone acetyltransferase at its C-terminus and is a subunit of RNA polymerase II (in yeast). This family lacks the GNAT acetyltransferase domain.
Probab=32.47 E-value=1.2e+02 Score=29.03 Aligned_cols=73 Identities=14% Similarity=0.048 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHHCCCeEEEEcCCCCCcHhHHHhhCCCCChhhHHHHHHHHHHHHHHhCCcCcEEEecCCCccccccccc
Q 016924 60 VDFYNNLINELISNGLTPFVTLFHWDTPQALEDEYGGFLSPKIVKDFGDYADLCFKEFGDRVKHWITLNEPETVGECGYA 139 (380)
Q Consensus 60 ~~~y~~~i~~l~~~gi~p~~tL~h~~~P~~l~~~~ggw~~~~~~~~f~~ya~~~~~~~~~~v~~w~t~NEp~~~~~~gy~ 139 (380)
++-+.+.++.++++||++.+.+. +++|. ++.+.+.+=++.+.+-=-+.|+.....-+|+.....-|.
T Consensus 162 ~~~~~~ai~~l~~~gi~v~~~lI-~GlPg------------et~e~~~~t~~~l~~l~~d~i~i~~l~~~pgT~L~~~~~ 228 (302)
T TIGR01212 162 FACYVDAVKRARKRGIKVCSHVI-LGLPG------------EDREEMMETAKIVSLLDVDGIKIHPLHVVKGTKMAKMYE 228 (302)
T ss_pred HHHHHHHHHHHHHcCCEEEEeEE-ECCCC------------CCHHHHHHHHHHHHhcCCCEEEEEEEEecCCCHHHHHHH
Confidence 35578899999999999877654 35552 234666666666655444668888777788765544455
Q ss_pred cCccCC
Q 016924 140 KGTKAP 145 (380)
Q Consensus 140 ~g~~~P 145 (380)
.|.+.|
T Consensus 229 ~g~~~~ 234 (302)
T TIGR01212 229 KGELKT 234 (302)
T ss_pred cCCCCC
Confidence 565544
No 173
>cd06525 GH25_Lyc-like Lyc muramidase is an autolytic lysozyme (autolysin) from Clostridium acetobutylicum encoded by the lyc gene. Lyc has a glycosyl hydrolase family 25 (GH25) catalytic domain. Endo-N-acetylmuramidases are lysozymes (also referred to as peptidoglycan hydrolases) that degrade bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues.
Probab=32.45 E-value=3.1e+02 Score=23.93 Aligned_cols=51 Identities=22% Similarity=0.399 Sum_probs=35.8
Q ss_pred HHHHHHHHcCCCEEEeccccccccccCCCCCCccchHHHHHHHHHHHHHHCCCeEEEEcCCCCCc
Q 016924 23 EDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFHWDTP 87 (380)
Q Consensus 23 eDi~l~~~lG~~~~R~si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~~tL~h~~~P 87 (380)
-|.+.+|+.|++.+=+=+. +| .+-.|. .|..-++.++++||. +..|||..|
T Consensus 12 id~~~~k~~gi~fviiKat------eG--~~y~D~----~~~~~~~~a~~aGl~--~G~Yhy~~~ 62 (184)
T cd06525 12 INFNAVKDSGVEVVYIKAT------EG--TTFVDS----YFNENYNGAKAAGLK--VGFYHFLVG 62 (184)
T ss_pred CCHHHHHhCCCeEEEEEec------CC--CcccCH----hHHHHHHHHHHCCCc--eEEEEEeeC
Confidence 4778888888774433332 34 245674 689999999999993 588898755
No 174
>PRK05904 coproporphyrinogen III oxidase; Provisional
Probab=32.36 E-value=1.9e+02 Score=28.51 Aligned_cols=93 Identities=16% Similarity=0.196 Sum_probs=54.7
Q ss_pred cHHHHHHHHHcCCCEEEeccc-c-ccccccCCCCCCccchHHHHHHHHHHHHHHCCCe-EEEEcCCCCCcHhHHHhhCCC
Q 016924 21 YKEDIALVKQVGFDSIRFSIS-W-SRILPHGNISGGVNQQGVDFYNNLINELISNGLT-PFVTLFHWDTPQALEDEYGGF 97 (380)
Q Consensus 21 ~~eDi~l~~~lG~~~~R~si~-W-~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~gi~-p~~tL~h~~~P~~l~~~~ggw 97 (380)
-+|.+++|+++|++.+-+++. = .++...- ....+ .+-..+.++.++++|+. +-++|- +++|.
T Consensus 102 t~e~l~~lk~~G~nrisiGvQS~~d~vL~~l--~R~~~---~~~~~~ai~~lr~~G~~~v~~dlI-~GlPg--------- 166 (353)
T PRK05904 102 TQSQINLLKKNKVNRISLGVQSMNNNILKQL--NRTHT---IQDSKEAINLLHKNGIYNISCDFL-YCLPI--------- 166 (353)
T ss_pred CHHHHHHHHHcCCCEEEEecccCCHHHHHHc--CCCCC---HHHHHHHHHHHHHcCCCcEEEEEe-ecCCC---------
Confidence 478899999999997777763 2 2232221 01222 34567899999999997 445553 45552
Q ss_pred CChhhHHHHHHHHHHHHHHhCCcCcEEEecCCCc
Q 016924 98 LSPKIVKDFGDYADLCFKEFGDRVKHWITLNEPE 131 (380)
Q Consensus 98 ~~~~~~~~f~~ya~~~~~~~~~~v~~w~t~NEp~ 131 (380)
++.+.|.+=.+.+.+-=-+++..+...=||.
T Consensus 167 ---qt~e~~~~tl~~~~~l~p~~is~y~L~~~~g 197 (353)
T PRK05904 167 ---LKLKDLDEVFNFILKHKINHISFYSLEIKEG 197 (353)
T ss_pred ---CCHHHHHHHHHHHHhcCCCEEEEEeeEecCC
Confidence 2345566655555433234555554444554
No 175
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=32.31 E-value=7.1e+02 Score=27.31 Aligned_cols=150 Identities=16% Similarity=0.114 Sum_probs=83.1
Q ss_pred ccccccCCCCCCccchHHHHHHHHHHHHHHC-CCeEEEEcCCCCC-----cHhHHH----hhCCCC--------------
Q 016924 43 SRILPHGNISGGVNQQGVDFYNNLINELISN-GLTPFVTLFHWDT-----PQALED----EYGGFL-------------- 98 (380)
Q Consensus 43 ~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~-gi~p~~tL~h~~~-----P~~l~~----~~ggw~-------------- 98 (380)
.|+.|.. -|-++.+-++-+++++|.+.++ |-+.++=|.|-.- +.|... .-+||.
T Consensus 459 g~~~~~~--~~~~~d~~i~~~~~~~~~vh~~gg~~i~~QL~h~Gr~~~~~~~~~~~~~~~~~~~~~~~~pS~~~~~~~~~ 536 (765)
T PRK08255 459 GRITPGC--PGLYNDEQEAAWKRIVDFVHANSDAKIGIQLGHSGRKGSTRLGWEGIDEPLEEGNWPLISASPLPYLPGSQ 536 (765)
T ss_pred cCCCCCC--CccCCHHHHHHHHHHHHHHHhcCCceEEEEccCCcccccccccccccccccccCCCceeCCCCCcCCCCCC
Confidence 4555543 2678888999999999999999 6999999999321 112100 002221
Q ss_pred -----C----hhhHHHHHHHHHHHHHHhC-CcCcEEEecCCCccccccccccCccC-CC--CCCCCCCCCCCCCCCChhH
Q 016924 99 -----S----PKIVKDFGDYADLCFKEFG-DRVKHWITLNEPETVGECGYAKGTKA-PG--RCSNYIGNCPAGNSATEPY 165 (380)
Q Consensus 99 -----~----~~~~~~f~~ya~~~~~~~~-~~v~~w~t~NEp~~~~~~gy~~g~~~-Pg--~~~~~~~~~~~~~~~~~~~ 165 (380)
+ .++++.|++=|+.+.+ -| |-|. +.+-.||+...|- |- .+.+.+ |-
T Consensus 537 ~p~~mt~~eI~~~i~~f~~aA~~a~~-aGfDgve---------ih~ahGyLl~qFlsp~~N~RtD~y-----GG------ 595 (765)
T PRK08255 537 VPREMTRADMDRVRDDFVAAARRAAE-AGFDWLE---------LHCAHGYLLSSFISPLTNQRTDEY-----GG------ 595 (765)
T ss_pred CCCcCCHHHHHHHHHHHHHHHHHHHH-cCCCEEE---------EecccchHHHHhcCCCCCCCCCCC-----CC------
Confidence 0 1267788876666544 33 3222 3455678776553 32 111100 11
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCccEEEEecCCccccCCCCHHHH-HHHHH
Q 016924 166 VAAHHLILSHATAVKLYRQNYQASQNGLIGITVSSIWAVPKFPTVASE-KAAYR 218 (380)
Q Consensus 166 ~~~h~~l~Aha~a~~~~~~~~~~~~~~~iG~~~~~~~~~P~~~~~~d~-~aa~~ 218 (380)
..-|-+.--.+.++++|+.. .++-.||+-++..-+.+...+++|. ..++.
T Consensus 596 -slenR~r~~~eiv~~ir~~~--~~~~~v~~ri~~~~~~~~g~~~~~~~~~~~~ 646 (765)
T PRK08255 596 -SLENRLRYPLEVFRAVRAVW--PAEKPMSVRISAHDWVEGGNTPDDAVEIARA 646 (765)
T ss_pred -CHHHHhHHHHHHHHHHHHhc--CCCCeeEEEEccccccCCCCCHHHHHHHHHH
Confidence 12233444446777788764 2455799888865444433455553 33343
No 176
>PRK07094 biotin synthase; Provisional
Probab=32.30 E-value=74 Score=30.64 Aligned_cols=57 Identities=14% Similarity=0.084 Sum_probs=40.2
Q ss_pred CcHHHHHHHHHcCCCEEEeccc-c-ccccccCCCCCCccchHHHHHHHHHHHHHHCCCeEEEEc
Q 016924 20 RYKEDIALVKQVGFDSIRFSIS-W-SRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTL 81 (380)
Q Consensus 20 ~~~eDi~l~~~lG~~~~R~si~-W-~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~~tL 81 (380)
.-+|.++.|++.|++.+-++++ - .++...- .... ..+.+-+.++.+++.||.+..++
T Consensus 127 ~~~e~l~~Lk~aG~~~v~~glEs~~~~~~~~i--~~~~---s~~~~~~~i~~l~~~Gi~v~~~~ 185 (323)
T PRK07094 127 RSYEEYKAWKEAGADRYLLRHETADKELYAKL--HPGM---SFENRIACLKDLKELGYEVGSGF 185 (323)
T ss_pred CCHHHHHHHHHcCCCEEEeccccCCHHHHHHh--CCCC---CHHHHHHHHHHHHHcCCeecceE
Confidence 4588999999999999999884 2 2444332 1112 23567889999999999866554
No 177
>PRK00042 tpiA triosephosphate isomerase; Provisional
Probab=32.28 E-value=1e+02 Score=28.87 Aligned_cols=48 Identities=19% Similarity=0.327 Sum_probs=32.3
Q ss_pred HHHHHHcCCCEEEeccccccccccCCCCCCccchHHHHHHHHHHHHHHCCCeEEEEc
Q 016924 25 IALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTL 81 (380)
Q Consensus 25 i~l~~~lG~~~~R~si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~~tL 81 (380)
.+++|++|++.+=++=|=.|. .+++. =+...+=+..++++||+|+++.
T Consensus 79 ~~mLkd~G~~~viiGHSERR~--------~f~Et-d~~v~~K~~~a~~~gl~pIvCi 126 (250)
T PRK00042 79 AEMLKDLGVKYVIIGHSERRQ--------YFGET-DELVNKKVKAALKAGLTPILCV 126 (250)
T ss_pred HHHHHHCCCCEEEeCcccccC--------ccCcC-HHHHHHHHHHHHHCCCEEEEEc
Confidence 588999999998888762222 22321 0223444445999999999998
No 178
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=31.98 E-value=74 Score=31.18 Aligned_cols=68 Identities=15% Similarity=0.202 Sum_probs=49.5
Q ss_pred HHHHHHHHHcCCCEEEeccccccccccCCCCCCccchHHHHHHHHHHHHHHCCCeEEEEcCCCCCcHhHHHhhCCCCChh
Q 016924 22 KEDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFHWDTPQALEDEYGGFLSPK 101 (380)
Q Consensus 22 ~eDi~l~~~lG~~~~R~si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~~tL~h~~~P~~l~~~~ggw~~~~ 101 (380)
.+|++...+.|++.+|+...+++. +--.+.|+.+++.|+++.+++..- +. .
T Consensus 91 ~~dl~~a~~~gvd~iri~~~~~e~---------------~~~~~~i~~ak~~G~~v~~~l~~a-----------~~---~ 141 (337)
T PRK08195 91 VDDLKMAYDAGVRVVRVATHCTEA---------------DVSEQHIGLARELGMDTVGFLMMS-----------HM---A 141 (337)
T ss_pred HHHHHHHHHcCCCEEEEEEecchH---------------HHHHHHHHHHHHCCCeEEEEEEec-----------cC---C
Confidence 689999999999999998754432 225889999999999999988531 11 2
Q ss_pred hHHHHHHHHHHHHHHhCC
Q 016924 102 IVKDFGDYADLCFKEFGD 119 (380)
Q Consensus 102 ~~~~f~~ya~~~~~~~~~ 119 (380)
..+.+.+.++.+. .+|-
T Consensus 142 ~~e~l~~~a~~~~-~~Ga 158 (337)
T PRK08195 142 PPEKLAEQAKLME-SYGA 158 (337)
T ss_pred CHHHHHHHHHHHH-hCCC
Confidence 3466777777654 4553
No 179
>PF01055 Glyco_hydro_31: Glycosyl hydrolases family 31 ; InterPro: IPR000322 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 31 GH31 from CAZY comprises enzymes with several known activities; alpha-glucosidase (3.2.1.20 from EC), alpha-galactosidase (3.2.1.22 from EC); glucoamylase (3.2.1.3 from EC), sucrase-isomaltase (3.2.1.48 from EC); isomaltase (3.2.1.10 from EC); alpha-xylosidase (3.2.1 from EC); alpha-glucan lyase (4.2.2.13 from EC). Glycoside hydrolase family 31 groups a number of glycosyl hydrolases on the basis of sequence similarities [, , ] An aspartic acid has been implicated [] in the catalytic activity of sucrase, isomaltase, and lysosomal alpha-glucosidase.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3L4U_A 3L4X_A 3L4W_A 3L4V_A 3CTT_A 2QMJ_A 2QLY_A 3L4Z_A 3L4Y_A 3L4T_A ....
Probab=31.94 E-value=1.6e+02 Score=29.61 Aligned_cols=108 Identities=17% Similarity=0.271 Sum_probs=65.5
Q ss_pred cHHHHHHHHHcCCCEEE--eccccccccccCCCCCCccchHHHHHHHHHHHHHHCCCeEEEEcCCC---CCc---HhHHH
Q 016924 21 YKEDIALVKQVGFDSIR--FSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFHW---DTP---QALED 92 (380)
Q Consensus 21 ~~eDi~l~~~lG~~~~R--~si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~~tL~h~---~~P---~~l~~ 92 (380)
..+-++.+++.|+..== +...|..-.. +-.+|.+.+.-.+++++.|+++|+++++.++-+ +.+ ..-..
T Consensus 45 v~~~i~~~~~~~iP~d~~~iD~~~~~~~~----~f~~d~~~FPd~~~~~~~l~~~G~~~~~~~~P~v~~~~~~~~~~~~~ 120 (441)
T PF01055_consen 45 VREVIDRYRSNGIPLDVIWIDDDYQDGYG----DFTWDPERFPDPKQMIDELHDQGIKVVLWVHPFVSNDSPDYENYDEA 120 (441)
T ss_dssp HHHHHHHHHHTT--EEEEEE-GGGSBTTB----TT-B-TTTTTTHHHHHHHHHHTT-EEEEEEESEEETTTTB-HHHHHH
T ss_pred HHHHHHHHHHcCCCccceecccccccccc----ccccccccccchHHHHHhHhhCCcEEEEEeecccCCCCCcchhhhhH
Confidence 34557788888876444 4445554222 245676666667999999999999998876532 222 11110
Q ss_pred h---h-----CC----------------CCChhhHHHHHHHHHHHHHHhCCcCcEEEecCCCccc
Q 016924 93 E---Y-----GG----------------FLSPKIVKDFGDYADLCFKEFGDRVKHWITLNEPETV 133 (380)
Q Consensus 93 ~---~-----gg----------------w~~~~~~~~f~~ya~~~~~~~~~~v~~w~t~NEp~~~ 133 (380)
+ + .| |.+++..+.|.+..+.+++.+|- --+|+=+|||..+
T Consensus 121 ~~~~~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~~~Gv-dg~w~D~~E~~~~ 184 (441)
T PF01055_consen 121 KEKGYLVKNPDGSPYIGRVWPGKGGFIDFTNPEARDWWKEQLKELLDDYGV-DGWWLDFGEPSSF 184 (441)
T ss_dssp HHTT-BEBCTTSSB-EEEETTEEEEEB-TTSHHHHHHHHHHHHHHHTTST--SEEEEESTTTBSS
T ss_pred hhcCceeecccCCcccccccCCcccccCCCChhHHHHHHHHHHHHHhccCC-ceEEeecCCcccc
Confidence 0 0 12 67888889988877776666542 3567999999875
No 180
>COG0138 PurH AICAR transformylase/IMP cyclohydrolase PurH (only IMP cyclohydrolase domain in Aful) [Nucleotide transport and metabolism]
Probab=31.33 E-value=76 Score=32.61 Aligned_cols=52 Identities=21% Similarity=0.459 Sum_probs=44.6
Q ss_pred CcccCCcccCcHHHHHHHHHcCCCEEEeccccccccccCCCCCCccchHHHHHHHHHHHHHHCCCeEEEE
Q 016924 11 GDVADNFYFRYKEDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVT 80 (380)
Q Consensus 11 ~~~a~~~y~~~~eDi~l~~~lG~~~~R~si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~~t 80 (380)
.-.|+|-+..+++-|+.+++.|++++ |+|-| .++- +++|+.+-++||..+.|
T Consensus 457 av~ASDAFFPF~D~i~~aA~aGi~aI--------IqPGG----SirD------~eVI~aAde~giaMvfT 508 (515)
T COG0138 457 AVLASDAFFPFPDGIDAAAKAGIKAI--------IQPGG----SIRD------QEVIAAADEHGIAMVFT 508 (515)
T ss_pred cEEeecccCCCcchHHHHHHcCCeEE--------ECCCC----cccc------HHHHHHHHhcCcEEEEc
Confidence 45789999999999999999999976 78865 4543 78999999999998887
No 181
>cd02871 GH18_chitinase_D-like GH18 domain of Chitinase D (ChiD). ChiD, a chitinase found in Bacillus circulans, hydrolyzes the 1,4-beta-linkages of N-acetylglucosamine in chitin and chitodextrins. The domain architecture of ChiD includes a catalytic glycosyl hydrolase family 18 (GH18) domain, a chitin-binding domain, and a fibronectin type III domain. The chitin-binding and fibronectin type III domains are located either N-terminal or C-terminal to the catalytic domain. This family includes exochitinase Chi36 from Bacillus cereus.
Probab=31.18 E-value=1.4e+02 Score=28.70 Aligned_cols=51 Identities=16% Similarity=0.148 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHCCCeEEEEcCCCCCcHhHHHhhCCCCChhhHHHHHHHHHHHHHHhC
Q 016924 61 DFYNNLINELISNGLTPFVTLFHWDTPQALEDEYGGFLSPKIVKDFGDYADLCFKEFG 118 (380)
Q Consensus 61 ~~y~~~i~~l~~~gi~p~~tL~h~~~P~~l~~~~ggw~~~~~~~~f~~ya~~~~~~~~ 118 (380)
....+.|..|+++|+++++++--++.. ....++...+.|++....+++.+|
T Consensus 60 ~~~~~~i~~~q~~G~KVllSiGG~~~~-------~~~~~~~~~~~fa~sl~~~~~~~g 110 (312)
T cd02871 60 AEFKADIKALQAKGKKVLISIGGANGH-------VDLNHTAQEDNFVDSIVAIIKEYG 110 (312)
T ss_pred HHHHHHHHHHHHCCCEEEEEEeCCCCc-------cccCCHHHHHHHHHHHHHHHHHhC
Confidence 345777889999999999998544311 012345566677777766666665
No 182
>smart00729 Elp3 Elongator protein 3, MiaB family, Radical SAM. This superfamily contains MoaA, NifB, PqqE, coproporphyrinogen III oxidase, biotin synthase and MiaB families, and includes a representative in the eukaryotic elongator subunit, Elp-3. Some members of the family are methyltransferases.
Probab=30.99 E-value=2.7e+02 Score=23.81 Aligned_cols=58 Identities=17% Similarity=0.215 Sum_probs=37.7
Q ss_pred cCcHHHHHHHHHcCCCEEEeccc-ccc-ccccCCCCCCccchHHHHHHHHHHHHHHCC-CeEEEEc
Q 016924 19 FRYKEDIALVKQVGFDSIRFSIS-WSR-ILPHGNISGGVNQQGVDFYNNLINELISNG-LTPFVTL 81 (380)
Q Consensus 19 ~~~~eDi~l~~~lG~~~~R~si~-W~r-i~p~~~~~g~~n~~~~~~y~~~i~~l~~~g-i~p~~tL 81 (380)
..-++.++.|+++|++.+.+|+. ++. +...- ....+ .+.+.+.|..+++.| +.+.+.+
T Consensus 97 ~~~~~~~~~l~~~~~~~i~isl~~~~~~~~~~~--~~~~~---~~~~~~~i~~~~~~g~~~v~~~~ 157 (216)
T smart00729 97 TLTEELLEALKEAGVNRVSLGVQSGSDEVLKAI--NRGHT---VEDVLEAVEKLREAGPIKVSTDL 157 (216)
T ss_pred cCCHHHHHHHHHcCCCeEEEecccCCHHHHHHh--cCCCC---HHHHHHHHHHHHHhCCcceEEeE
Confidence 34577899999999998888885 432 21111 01112 367888888999999 6555443
No 183
>PHA02769 hypothetical protein; Provisional
Probab=30.68 E-value=85 Score=25.73 Aligned_cols=37 Identities=35% Similarity=0.500 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHCCCeEEEEcCCCCCcHhHHHhhCCC
Q 016924 60 VDFYNNLINELISNGLTPFVTLFHWDTPQALEDEYGGF 97 (380)
Q Consensus 60 ~~~y~~~i~~l~~~gi~p~~tL~h~~~P~~l~~~~ggw 97 (380)
+.|...+-+.+++-|++++.||-.-|....|..+ .|+
T Consensus 98 vnfl~~l~~k~~~dg~evlwtlgfpdhsnaly~k-agf 134 (154)
T PHA02769 98 VNFLNDLAEKLKKDGFEVLWTLGFPDHSNALYKK-AGF 134 (154)
T ss_pred HHHHHHHHHHHhcCCeEEEEEecCCCcchhHHhh-hhh
Confidence 5678888889999999999999766777777665 454
No 184
>PF02065 Melibiase: Melibiase; InterPro: IPR000111 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycosyl hydrolase family 27, family 31 and family 36 alpha-galactosidases form the glycosyl hydrolase clan GH-D (acc_GH from CAZY), a superfamily of alpha-galactosidases, alpha-N-acetylgalactosaminidases, and isomaltodextranases which are likely to share a common catalytic mechanism and structural topology. Alpha-galactosidase (3.2.1.22 from EC) (melibiase) [] catalyzes the hydrolysis of melibiose into galactose and glucose. In man, the deficiency of this enzyme is the cause of Fabry's disease (X-linked sphingolipidosis). Alpha-galactosidase is present in a variety of organisms. There is a considerable degree of similarity in the sequence of alpha-galactosidase from various eukaryotic species. Escherichia coli alpha-galactosidase (gene melA), which requires NAD and magnesium as cofactors, is not structurally related to the eukaryotic enzymes; by contrast, an Escherichia coli plasmid encoded alpha-galactosidase (gene rafA P16551 from SWISSPROT) [] contains a region of about 50 amino acids which is similar to a domain of the eukaryotic alpha-galactosidases. Alpha-N-acetylgalactosaminidase (3.2.1.49 from EC) [] catalyzes the hydrolysis of terminal non-reducing N-acetyl-D-galactosamine residues in N-acetyl-alpha-D- galactosaminides. In man, the deficiency of this enzyme is the cause of Schindler and Kanzaki diseases. The sequence of this enzyme is highly related to that of the eukaryotic alpha-galactosidases.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1KTC_A 1KTB_A 1UAS_A 3H55_A 3H53_A 3IGU_B 3H54_A 3LRM_A 3LRL_A 3LRK_A ....
Probab=30.37 E-value=3.5e+02 Score=27.18 Aligned_cols=104 Identities=14% Similarity=0.172 Sum_probs=60.3
Q ss_pred HHHHHHHHcCCCEEEeccccccccccCC-CCC--CccchHH-HHHHHHHHHHHHCCCeEEEEcC----------CCCCcH
Q 016924 23 EDIALVKQVGFDSIRFSISWSRILPHGN-ISG--GVNQQGV-DFYNNLINELISNGLTPFVTLF----------HWDTPQ 88 (380)
Q Consensus 23 eDi~l~~~lG~~~~R~si~W~ri~p~~~-~~g--~~n~~~~-~~y~~~i~~l~~~gi~p~~tL~----------h~~~P~ 88 (380)
+-++.++++|++.+=+.=-|-.--.... .-| .+|.+-+ .=...+++.+++.||++=+=+- .-.+|.
T Consensus 62 ~~a~~~~~~G~e~fviDDGW~~~r~~d~~~~GdW~~~~~kFP~Gl~~l~~~i~~~Gmk~GlW~ePe~v~~~S~l~~~hPd 141 (394)
T PF02065_consen 62 ELADAAAELGYEYFVIDDGWFGGRDDDNAGLGDWEPDPKKFPNGLKPLADYIHSLGMKFGLWFEPEMVSPDSDLYREHPD 141 (394)
T ss_dssp HHHHHHHHHT-SEEEE-SSSBCTESTTTSTTSBECBBTTTSTTHHHHHHHHHHHTT-EEEEEEETTEEESSSCHCCSSBG
T ss_pred HHHHHHHHhCCEEEEEcCccccccCCCcccCCceeEChhhhCCcHHHHHHHHHHCCCeEEEEeccccccchhHHHHhCcc
Confidence 3468889999998888888964311100 002 1222111 1168999999999999866331 124688
Q ss_pred hHHHhhCC-------------CCChhhHHHHHHHHHHHHHHhCCcCcEE-EecCC
Q 016924 89 ALEDEYGG-------------FLSPKIVKDFGDYADLCFKEFGDRVKHW-ITLNE 129 (380)
Q Consensus 89 ~l~~~~gg-------------w~~~~~~~~f~~ya~~~~~~~~~~v~~w-~t~NE 129 (380)
|+... ++ ..+|++.+...+-...+++.+| |+|. .=+|.
T Consensus 142 w~l~~-~~~~~~~~r~~~vLD~~~pev~~~l~~~i~~ll~~~g--idYiK~D~n~ 193 (394)
T PF02065_consen 142 WVLRD-PGRPPTLGRNQYVLDLSNPEVRDYLFEVIDRLLREWG--IDYIKWDFNR 193 (394)
T ss_dssp GBTCC-TTSE-ECBTTBEEB-TTSHHHHHHHHHHHHHHHHHTT---SEEEEE-TS
T ss_pred ceeec-CCCCCcCcccceEEcCCCHHHHHHHHHHHHHHHHhcC--CCEEEecccc
Confidence 87432 11 3478888888888888888886 4444 33444
No 185
>COG3534 AbfA Alpha-L-arabinofuranosidase [Carbohydrate transport and metabolism]
Probab=30.35 E-value=1.8e+02 Score=29.72 Aligned_cols=95 Identities=20% Similarity=0.359 Sum_probs=58.2
Q ss_pred cHHH-HHHHHHcCCCEEEec-------ccccc-ccccCCCC---------CCccchHHHHHHHHHHHHHHCCCeEEEEcC
Q 016924 21 YKED-IALVKQVGFDSIRFS-------ISWSR-ILPHGNIS---------GGVNQQGVDFYNNLINELISNGLTPFVTLF 82 (380)
Q Consensus 21 ~~eD-i~l~~~lG~~~~R~s-------i~W~r-i~p~~~~~---------g~~n~~~~~~y~~~i~~l~~~gi~p~~tL~ 82 (380)
++.| +.++|+|-+...|+. -.|.. |-|..... -+-|+=| .+++++.|+..|.+|++.+.
T Consensus 50 ~RkDVle~lk~Lk~P~lR~PGGnFvs~Y~WeDGIGP~e~Rp~rldlaW~t~EtN~~G---t~EF~~~~e~iGaep~~avN 126 (501)
T COG3534 50 FRKDVLEALKDLKIPVLRWPGGNFVSGYHWEDGIGPREERPRRLDLAWGTTETNEFG---THEFMDWCELIGAEPYIAVN 126 (501)
T ss_pred hHHHHHHHHHhcCCceeecCCcccccccccccCcCchhhCchhhccccccccccccc---HHHHHHHHHHhCCceEEEEe
Confidence 4555 688999999999875 23532 22221000 1112222 47899999999999999984
Q ss_pred CCCCcHhHHHhhCCCCChhhHHHHHHHHHH--------HHHHhCC----cCcEEEecCCC
Q 016924 83 HWDTPQALEDEYGGFLSPKIVKDFGDYADL--------CFKEFGD----RVKHWITLNEP 130 (380)
Q Consensus 83 h~~~P~~l~~~~ggw~~~~~~~~f~~ya~~--------~~~~~~~----~v~~w~t~NEp 130 (380)
=|-...+....|.+||.. +-+..|- .||+|.+=||-
T Consensus 127 ------------~Gsrgvd~ar~~vEY~n~pggtywsdlR~~~G~~~P~nvK~w~lGNEm 174 (501)
T COG3534 127 ------------LGSRGVDEARNWVEYCNHPGGTYWSDLRRENGREEPWNVKYWGLGNEM 174 (501)
T ss_pred ------------cCCccHHHHHHHHHHccCCCCChhHHHHHhcCCCCCcccceEEecccc
Confidence 122334555667776642 2233343 28999999996
No 186
>TIGR02635 RhaI_grampos L-rhamnose isomerase, Streptomyces subtype. This clade of sequences is closely related to the L-rhamnose isomerases found in Pseudomonas stutzeri and in a number of the Rhizobiales (TIGR02629). The genes of the family represented here are found in similar genomic contexts which contain genes apparently involved in rhamnose catabolism such as rhamnulose-1-phosphate aldolase (TIGR02632), sugar kinases, and sugar transporters.
Probab=30.33 E-value=2.5e+02 Score=28.08 Aligned_cols=90 Identities=22% Similarity=0.330 Sum_probs=58.1
Q ss_pred CcccCCcccCcHHHHHHHHHc-CCCEEEecc--ccccccccCCCCCCccchHHHHHHHHHHHHHHCCCeEE-EEcCCCCC
Q 016924 11 GDVADNFYFRYKEDIALVKQV-GFDSIRFSI--SWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPF-VTLFHWDT 86 (380)
Q Consensus 11 ~~~a~~~y~~~~eDi~l~~~l-G~~~~R~si--~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~-~tL~h~~~ 86 (380)
++.+.+-.++ -+|++.++.| ++. .++++ .| . .. ..+.++.+.+.++||++. ++...|..
T Consensus 33 ~g~~r~~~e~-~~d~~~v~~L~~~~-~~v~lH~~~------d---~~------~d~~~~~~~l~~~GL~v~~i~p~~f~~ 95 (378)
T TIGR02635 33 EGAARNVFEK-IEDAALVHRLTGIC-PTVALHIPW------D---RV------EDYEELARYAEELGLKIGAINPNLFQD 95 (378)
T ss_pred CCCCCCHHHH-HHHHHHHHhhcCCC-CceeeccCC------c---cc------cCHHHHHHHHHHcCCceeeeeCCccCC
Confidence 3445444444 6788888877 555 66655 44 2 11 226788888999999998 78776766
Q ss_pred cHhHHHhhCCCCCh--hhHHHHHHHHHHHH---HHhCCc
Q 016924 87 PQALEDEYGGFLSP--KIVKDFGDYADLCF---KEFGDR 120 (380)
Q Consensus 87 P~~l~~~~ggw~~~--~~~~~f~~ya~~~~---~~~~~~ 120 (380)
|.+ ++|.+.|+ ++.....++++.+. +.+|..
T Consensus 96 ~~~---~~GSLt~pD~~vR~~AIe~~k~~idiA~eLGa~ 131 (378)
T TIGR02635 96 DDY---KFGSLTHPDKRIRRKAIDHLLECVDIAKKTGSK 131 (378)
T ss_pred ccc---CCCCCCCCCHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 654 34677664 45566667766654 577764
No 187
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=30.22 E-value=1.9e+02 Score=29.84 Aligned_cols=62 Identities=15% Similarity=0.128 Sum_probs=40.9
Q ss_pred CcHHHHHHHHHcCCCEEEeccc--cccccccCCCCCCccchHHHHHHHHHHHHHHCCCeEEEEcCCCCCc
Q 016924 20 RYKEDIALVKQVGFDSIRFSIS--WSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFHWDTP 87 (380)
Q Consensus 20 ~~~eDi~l~~~lG~~~~R~si~--W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~~tL~h~~~P 87 (380)
+-++-+++|++.|++.+-++++ =.++.-.- ....+ ++-..+.|..++++||.+.+.+- +++|
T Consensus 285 ~d~ell~~l~~aG~~~v~iGiES~~~~~L~~~--~K~~t---~~~~~~ai~~l~~~Gi~~~~~~I-~G~P 348 (497)
T TIGR02026 285 RDADILHLYRRAGLVHISLGTEAAAQATLDHF--RKGTT---TSTNKEAIRLLRQHNILSEAQFI-TGFE 348 (497)
T ss_pred CCHHHHHHHHHhCCcEEEEccccCCHHHHHHh--cCCCC---HHHHHHHHHHHHHCCCcEEEEEE-EECC
Confidence 3466789999999999888885 12222211 11223 34567899999999999877653 3444
No 188
>PLN03153 hypothetical protein; Provisional
Probab=30.17 E-value=46 Score=34.54 Aligned_cols=69 Identities=22% Similarity=0.254 Sum_probs=39.6
Q ss_pred HHHHCC-CeEEEEcCCCCCcHhHHHhhCCCCChhhHHHHHHHH----HHHHHHh--CCcCcEEEecCCCccccccccccC
Q 016924 69 ELISNG-LTPFVTLFHWDTPQALEDEYGGFLSPKIVKDFGDYA----DLCFKEF--GDRVKHWITLNEPETVGECGYAKG 141 (380)
Q Consensus 69 ~l~~~g-i~p~~tL~h~~~P~~l~~~~ggw~~~~~~~~f~~ya----~~~~~~~--~~~v~~w~t~NEp~~~~~~gy~~g 141 (380)
.+.+.| +.|+|+||||+. | +.-|.+....+.++.|..=| ..++++. +|+..-|..- ...||..-
T Consensus 326 G~les~p~~P~vSlHH~~~--~-~p~fP~~~~~~~~~~l~~a~~~d~~~~lq~siCyd~~~~w~fs------vSwGysV~ 396 (537)
T PLN03153 326 GLLSSHPIAPFVSIHHVEA--V-DPFYPGLSSLDSLKLFTRAMKVDPRSFLQRSICYDHTHHLTFS------ISLGYVVQ 396 (537)
T ss_pred hHhhcCCCCCceeeeeccc--c-ccccCCcchHHHHHHHHHHhhcCchhHHHHHHhhhcccceeEE------EeccEEEE
Confidence 344554 999999999985 1 11134444455666666544 2233443 5555556432 55788776
Q ss_pred ccCCC
Q 016924 142 TKAPG 146 (380)
Q Consensus 142 ~~~Pg 146 (380)
.|+-+
T Consensus 397 ~y~~~ 401 (537)
T PLN03153 397 VFPSI 401 (537)
T ss_pred EecCC
Confidence 66543
No 189
>cd06562 GH20_HexA_HexB-like Beta-N-acetylhexosaminidases catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. The hexA and hexB genes encode the alpha- and beta-subunits of the two major beta-N-acetylhexosaminidase isoenzymes, N-acetyl-beta-D-hexosaminidase A (HexA) and beta-N-acetylhexosaminidase B (HexB). Both the alpha and the beta catalytic subunits have a TIM-barrel fold and belong to the glycosyl hydrolase family 20 (GH20). The HexA enzyme is a heterodimer containing one alpha and one beta subunit while the HexB enzyme is a homodimer containing two beta-subunits. Hexosaminidase mutations cause an inability to properly hydrolyze certain sphingolipids which accumulate in lysosomes within the brain, resulting in the lipid storage disorders Tay-Sachs and Sandhoff. Mutations in the alpha subunit cause in a deficiency in the HexA enzyme and result in
Probab=29.96 E-value=1.4e+02 Score=29.42 Aligned_cols=72 Identities=15% Similarity=0.219 Sum_probs=47.3
Q ss_pred cccCCcccC--cHHHHHHHHHcCCCEEEeccc----ccccc----ccCCC------CCCccchHHHHHHHHHHHHHHCCC
Q 016924 12 DVADNFYFR--YKEDIALVKQVGFDSIRFSIS----WSRIL----PHGNI------SGGVNQQGVDFYNNLINELISNGL 75 (380)
Q Consensus 12 ~~a~~~y~~--~~eDi~l~~~lG~~~~R~si~----W~ri~----p~~~~------~g~~n~~~~~~y~~~i~~l~~~gi 75 (380)
|+|-.++-. .++-|+.|+..++|.+.+=++ | ||+ |.-+. +|.+.. +=++++|+.++++||
T Consensus 9 DvaR~f~~~~~ik~~Id~ma~~KlN~lh~HltDd~~~-rle~~~~P~Lt~~ga~~~~~~YT~---~di~eiv~yA~~rgI 84 (348)
T cd06562 9 DTSRHFLSVDSIKRTIDAMAYNKLNVLHWHITDSQSF-PLESPSYPELSKKGAYSPSEVYTP---EDVKEIVEYARLRGI 84 (348)
T ss_pred eccccCCCHHHHHHHHHHHHHhCCcEEEEeEEcCCCc-eEeeCCCchhhhccCcCCCceECH---HHHHHHHHHHHHcCC
Confidence 555544321 455589999999998877653 3 332 22110 123444 457999999999999
Q ss_pred eEEEEcCCCCCcHhH
Q 016924 76 TPFVTLFHWDTPQAL 90 (380)
Q Consensus 76 ~p~~tL~h~~~P~~l 90 (380)
++|.-+ |+|-..
T Consensus 85 ~vIPEI---D~PGH~ 96 (348)
T cd06562 85 RVIPEI---DTPGHT 96 (348)
T ss_pred EEEEec---cCchhh
Confidence 999886 788643
No 190
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=29.48 E-value=32 Score=20.43 Aligned_cols=15 Identities=27% Similarity=0.534 Sum_probs=12.6
Q ss_pred HHHHHHHHHHCCCeE
Q 016924 63 YNNLINELISNGLTP 77 (380)
Q Consensus 63 y~~~i~~l~~~gi~p 77 (380)
-.++++.+++.||+|
T Consensus 20 a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 20 ALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHhCCCC
Confidence 477888889999987
No 191
>PRK06582 coproporphyrinogen III oxidase; Provisional
Probab=28.84 E-value=1.8e+02 Score=29.04 Aligned_cols=95 Identities=12% Similarity=0.060 Sum_probs=57.9
Q ss_pred cHHHHHHHHHcCCCEEEeccc-c-ccccccCCCCCCccchHHHHHHHHHHHHHHCCCeEEEEcCCCCCcHhHHHhhCCCC
Q 016924 21 YKEDIALVKQVGFDSIRFSIS-W-SRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFHWDTPQALEDEYGGFL 98 (380)
Q Consensus 21 ~~eDi~l~~~lG~~~~R~si~-W-~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~~tL~h~~~P~~l~~~~ggw~ 98 (380)
-++.++.|+++|+|.+.+++. - .+++..- |..- ..+-..+.++.+++.++.+-++|- +++|.
T Consensus 110 ~~e~l~~l~~~GvnRiSiGvQS~~d~~L~~l---gR~h--~~~~~~~ai~~~~~~~~~v~~DlI-~GlPg---------- 173 (390)
T PRK06582 110 ETEKFKAFKLAGINRVSIGVQSLKEDDLKKL---GRTH--DCMQAIKTIEAANTIFPRVSFDLI-YARSG---------- 173 (390)
T ss_pred CHHHHHHHHHCCCCEEEEECCcCCHHHHHHc---CCCC--CHHHHHHHHHHHHHhCCcEEEEee-cCCCC----------
Confidence 368999999999997777773 2 2222221 2221 123445567778888888888876 56662
Q ss_pred ChhhHHHHHHHHHHHHHHhCCcCcEEEecCCCccc
Q 016924 99 SPKIVKDFGDYADLCFKEFGDRVKHWITLNEPETV 133 (380)
Q Consensus 99 ~~~~~~~f~~ya~~~~~~~~~~v~~w~t~NEp~~~ 133 (380)
++.+.|.+=++.+.+-=-++|..+...=||...
T Consensus 174 --qt~e~~~~~l~~~~~l~p~his~y~L~i~~gT~ 206 (390)
T PRK06582 174 --QTLKDWQEELKQAMQLATSHISLYQLTIEKGTP 206 (390)
T ss_pred --CCHHHHHHHHHHHHhcCCCEEEEecCEEccCCh
Confidence 234455555555555434667777666666543
No 192
>TIGR00538 hemN oxygen-independent coproporphyrinogen III oxidase. This model represents HemN, the oxygen-independent coproporphyrinogen III oxidase that replaces HemF function under anaerobic conditions. Several species, including E. coli, Helicobacter pylori, and Aquifex aeolicus, have both a member of this family and a member of another, closely related family for which there is no evidence of coproporphyrinogen III oxidase activity. Members of this family have a perfectly conserved motif PYRT[SC]YP in a region N-terminal to the region of homology with the related uncharacterized protein.
Probab=28.75 E-value=1.1e+02 Score=31.28 Aligned_cols=77 Identities=16% Similarity=0.298 Sum_probs=46.8
Q ss_pred cHHHHHHHHHcCCCEEEeccc-cc-cccccCCCCCCccchHHHHHHHHHHHHHHCCCe-EEEEcCCCCCcHhHHHhhCCC
Q 016924 21 YKEDIALVKQVGFDSIRFSIS-WS-RILPHGNISGGVNQQGVDFYNNLINELISNGLT-PFVTLFHWDTPQALEDEYGGF 97 (380)
Q Consensus 21 ~~eDi~l~~~lG~~~~R~si~-W~-ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~gi~-p~~tL~h~~~P~~l~~~~ggw 97 (380)
-++.+++|+++|++.+-+++. =+ ++.-.- ....+ .+...+.++.|++.|++ +-+.|. +++|.
T Consensus 150 ~~e~l~~lk~~G~~risiGvqS~~~~~l~~l--~r~~~---~~~~~~ai~~l~~~G~~~v~~dli-~GlPg--------- 214 (455)
T TIGR00538 150 TKDVIDALRDEGFNRLSFGVQDFNKEVQQAV--NRIQP---EEMIFELMNHAREAGFTSINIDLI-YGLPK--------- 214 (455)
T ss_pred CHHHHHHHHHcCCCEEEEcCCCCCHHHHHHh--CCCCC---HHHHHHHHHHHHhcCCCcEEEeEE-eeCCC---------
Confidence 478899999999997777763 11 222111 11122 35678899999999997 444442 44552
Q ss_pred CChhhHHHHHHHHHHHHH
Q 016924 98 LSPKIVKDFGDYADLCFK 115 (380)
Q Consensus 98 ~~~~~~~~f~~ya~~~~~ 115 (380)
++.+.|.+-.+.+.+
T Consensus 215 ---qt~e~~~~tl~~~~~ 229 (455)
T TIGR00538 215 ---QTKESFAKTLEKVAE 229 (455)
T ss_pred ---CCHHHHHHHHHHHHh
Confidence 234556555555544
No 193
>TIGR01531 glyc_debranch glycogen debranching enzymye. glycogen debranching enzyme possesses two different catalytic activities; oligo-1,4--1,4-glucantransferase (EC 2.4.1.25) and amylo-1,6-glucosidase (EC 3.2.1.33). Site directed mutagenesis studies in S. cerevisiae indicate that the transferase and glucosidase activities are independent and located in different regions of the polypeptide chain. Proteins in this model belong to the larger alpha-amylase family. The model covers eukaryotic proteins with a seed composed of human, nematode and yeast sequences. Yeast seed sequence is well characterized. The model is quite rigorous; either query sequence yields large bit score or it fails to hit the model altogether. There doesn't appear to be any middle ground.
Probab=28.66 E-value=2.4e+02 Score=33.19 Aligned_cols=70 Identities=20% Similarity=0.357 Sum_probs=48.6
Q ss_pred CcccCcHHHHHHHHHcCCCEEEeccccccccccCCCCC---------Cccc------hHHHHHHHHHHHHHHC-CCeEEE
Q 016924 16 NFYFRYKEDIALVKQVGFDSIRFSISWSRILPHGNISG---------GVNQ------QGVDFYNNLINELISN-GLTPFV 79 (380)
Q Consensus 16 ~~y~~~~eDi~l~~~lG~~~~R~si~W~ri~p~~~~~g---------~~n~------~~~~~y~~~i~~l~~~-gi~p~~ 79 (380)
+-+..|++.++.++++|+|++-|. -|+|.+. ++ ++|+ .+.+-..++|+.+.+. ||..|+
T Consensus 129 G~~~~w~~~L~~ik~lGyN~Ihft----PI~~~G~-SnS~Ysi~Dyl~idP~~~~~~~~~~d~~~lV~~~h~~~Gm~~il 203 (1464)
T TIGR01531 129 GPLSEWEPRLRVAKEKGYNMIHFT----PLQELGG-SNSCYSLYDQLQLNQHFKSQKDGKNDVQALVEKLHRDWNVLSIT 203 (1464)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEeC----CCccCCC-CCCCccccchhhcChhhcccCCcHHHHHHHHHHHHHhcCCEEEE
Confidence 445679999999999999998875 3443331 11 1222 3445678999999996 999998
Q ss_pred E--cCC--CCCcHhHH
Q 016924 80 T--LFH--WDTPQALE 91 (380)
Q Consensus 80 t--L~h--~~~P~~l~ 91 (380)
. +.| ++.| ||.
T Consensus 204 DvV~NHTa~ds~-Wl~ 218 (1464)
T TIGR01531 204 DIVFNHTANNSP-WLL 218 (1464)
T ss_pred EeeecccccCCH-HHH
Confidence 7 446 5554 665
No 194
>cd06604 GH31_glucosidase_II_MalA Alpha-glucosidase II (alpha-D-glucoside glucohydrolase) is a glycosyl hydrolase family 31 (GH31) enzyme, found in bacteria and plants, which has exo-alpha-1,4-glucosidase and oligo-1,6-glucosidase activities. Alpha-glucosidase II has been characterized in Bacillus thermoamyloliquefaciens where it forms a homohexamer. This family also includes the MalA alpha-glucosidase from Sulfolobus sulfataricus and the AglA alpha-glucosidase from Picrophilus torridus. MalA is part of the carbohydrate-metabolizing machinery that allows this organism to utilize carbohydrates, such as maltose, as the sole carbon and energy source.
Probab=28.60 E-value=4.1e+02 Score=25.83 Aligned_cols=106 Identities=19% Similarity=0.219 Sum_probs=63.5
Q ss_pred cHHHHHHHHHcCCC--EEEeccccccccccCCCCCCccchHHHHHHHHHHHHHHCCCeEEEEcCCC---C--CcHhHHHh
Q 016924 21 YKEDIALVKQVGFD--SIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFHW---D--TPQALEDE 93 (380)
Q Consensus 21 ~~eDi~l~~~lG~~--~~R~si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~~tL~h~---~--~P~~l~~~ 93 (380)
..+-++.+++.|+. ++=+.+.|..-. + .-.+|.+-+---.++|+.|+++|++.++.+.-+ + .|..-+..
T Consensus 26 v~~~~~~~~~~~iP~d~i~lD~~~~~~~--~--~f~~d~~~fPdp~~m~~~l~~~g~~~~~~~~P~v~~~~~~~~~~e~~ 101 (339)
T cd06604 26 VREIADEFRERDIPCDAIYLDIDYMDGY--R--VFTWDKERFPDPKELIKELHEQGFKVVTIIDPGVKVDPGYDVYEEGL 101 (339)
T ss_pred HHHHHHHHHHhCCCcceEEECchhhCCC--C--ceeeccccCCCHHHHHHHHHHCCCEEEEEEeCceeCCCCChHHHHHH
Confidence 34556777777765 555556665421 1 123444333335799999999999998765422 1 22221110
Q ss_pred -------------h--------C---CCCChhhHHHHHHHHHHHHHHhCCcC-cEEEecCCCccc
Q 016924 94 -------------Y--------G---GFLSPKIVKDFGDYADLCFKEFGDRV-KHWITLNEPETV 133 (380)
Q Consensus 94 -------------~--------g---gw~~~~~~~~f~~ya~~~~~~~~~~v-~~w~t~NEp~~~ 133 (380)
| + -|.||+..+.|.+.-+.+. .. -| -+|+=+|||..+
T Consensus 102 ~~g~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~-~~--Gvdg~w~D~~Ep~~~ 163 (339)
T cd06604 102 ENDYFVKDPDGELYIGRVWPGLSAFPDFTNPKVREWWGSLYKKFV-DL--GVDGIWNDMNEPAVF 163 (339)
T ss_pred HCCeEEECCCCCEEEEEecCCCccccCCCChHHHHHHHHHHHHHh-hC--CCceEeecCCCcccc
Confidence 0 1 2568888888877666554 23 34 467899999875
No 195
>PRK14566 triosephosphate isomerase; Provisional
Probab=28.17 E-value=1.8e+02 Score=27.57 Aligned_cols=49 Identities=18% Similarity=0.233 Sum_probs=36.4
Q ss_pred HHHHHHcCCCEEEeccccccccccCCCCCCccchHHHHHHHHHHHHHHCCCeEEEEcC
Q 016924 25 IALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLF 82 (380)
Q Consensus 25 i~l~~~lG~~~~R~si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~~tL~ 82 (380)
.+++|++|++.+=++=|=.|.. - ++-| +....-+..++++||+|+++.-
T Consensus 88 ~~mL~d~G~~~viiGHSERR~~-f----~Etd----~~v~~Kv~~al~~gl~pIvCvG 136 (260)
T PRK14566 88 GQMLKDAGCRYVIIGHSERRRM-Y----GETS----NIVAEKFAAAQKHGLTPILCVG 136 (260)
T ss_pred HHHHHHcCCCEEEECcccccCC-C----CcCH----HHHHHHHHHHHHCCCEEEEEcC
Confidence 5899999999988887733322 1 2233 4567788999999999999983
No 196
>cd06589 GH31 The enzymes of glycosyl hydrolase family 31 (GH31) occur in prokaryotes, eukaryotes, and archaea with a wide range of hydrolytic activities, including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. In most cases, the pyranose moiety recognized in subsite -1 of the substrate binding site is an alpha-D-glucose, though some GH31 family members show a preference for alpha-D-xylose. Several GH31 enzymes can accommodate both glucose and xylose and different levels of discrimination between the two have been observed. Most characterized GH31 enzymes are alpha-glucosidases. In mammals, GH31 members with alpha-glucosidase activity are implicated in at least three distinct biological processes
Probab=28.00 E-value=2.1e+02 Score=26.69 Aligned_cols=90 Identities=16% Similarity=0.193 Sum_probs=57.4
Q ss_pred cHHHHHHHHHcCCC--EEEeccccccccccCCCCC--CccchHHHHHHHHHHHHHHCCCeEEEEcCCCCCcHhHHHhhCC
Q 016924 21 YKEDIALVKQVGFD--SIRFSISWSRILPHGNISG--GVNQQGVDFYNNLINELISNGLTPFVTLFHWDTPQALEDEYGG 96 (380)
Q Consensus 21 ~~eDi~l~~~lG~~--~~R~si~W~ri~p~~~~~g--~~n~~~~~~y~~~i~~l~~~gi~p~~tL~h~~~P~~l~~~~gg 96 (380)
..+-++.+++.|+. ++=+.+.|..-. + .- .+|.+-+.--.++|+.|+++|++.++.+. |.
T Consensus 26 v~~~~~~~~~~~iP~d~~~lD~~~~~~~--~--~f~~~~d~~~Fpdp~~~i~~l~~~g~~~~~~~~----P~-------- 89 (265)
T cd06589 26 VLEVIDGMRENDIPLDGFVLDDDYTDGY--G--DFTFDWDAGKFPNPKSMIDELHDNGVKLVLWID----PY-------- 89 (265)
T ss_pred HHHHHHHHHHcCCCccEEEECcccccCC--c--eeeeecChhhCCCHHHHHHHHHHCCCEEEEEeC----hh--------
Confidence 34456777776655 676777775432 2 13 45655555568999999999999998763 32
Q ss_pred CCChhhHHHHHHHHHHHHHHhCCcC-cEEEecCCCccc
Q 016924 97 FLSPKIVKDFGDYADLCFKEFGDRV-KHWITLNEPETV 133 (380)
Q Consensus 97 w~~~~~~~~f~~ya~~~~~~~~~~v-~~w~t~NEp~~~ 133 (380)
+.+.|.+..+.+.... -| -+|+=+|||...
T Consensus 90 -----v~~w~~~~~~~~~~~~--Gvdg~w~D~~E~~~~ 120 (265)
T cd06589 90 -----IREWWAEVVKKLLVSL--GVDGFWTDMGEPSPG 120 (265)
T ss_pred -----HHHHHHHHHHHhhccC--CCCEEeccCCCCCcC
Confidence 1455655555432223 34 467899999764
No 197
>PRK10605 N-ethylmaleimide reductase; Provisional
Probab=27.87 E-value=6e+02 Score=25.07 Aligned_cols=191 Identities=17% Similarity=0.149 Sum_probs=101.0
Q ss_pred CCccchHHHHHHHHHHHHHHCCCeEEEEcCCCCC---c--------Hh----HHHh--------------hCCCC----C
Q 016924 53 GGVNQQGVDFYNNLINELISNGLTPFVTLFHWDT---P--------QA----LEDE--------------YGGFL----S 99 (380)
Q Consensus 53 g~~n~~~~~~y~~~i~~l~~~gi~p~~tL~h~~~---P--------~~----l~~~--------------~ggw~----~ 99 (380)
+-+|.+-+.-++++.+.++++|-+.++=|+|-.- . .+ .... ..+-. +
T Consensus 71 ~l~~d~~i~~~~~lad~vH~~Ga~i~~QL~H~Gr~~~~~~~~~~~~~~apS~~~~~~~~~~~~~~~~~~~~~~~~p~~mt 150 (362)
T PRK10605 71 GLHSPEQIAAWKKITAGVHAEGGHIAVQLWHTGRISHASLQPGGQAPVAPSAINAGTRTSLRDENGQAIRVETSTPRALE 150 (362)
T ss_pred cccCHHHHHHHHHHHHHHHhCCCEEEEeccCCCCCCCcccCCCCCCeECCCCcCcCcccccccccccccccCCCCCccCC
Confidence 5678888999999999999999999999999431 0 00 0000 00000 0
Q ss_pred ----hhhHHHHHHHHHHHHHHhCCcCcEEEecCCCccccccccccCccC-CCC--CCCCCCCCCCCCCCChhHHHHHHHH
Q 016924 100 ----PKIVKDFGDYADLCFKEFGDRVKHWITLNEPETVGECGYAKGTKA-PGR--CSNYIGNCPAGNSATEPYVAAHHLI 172 (380)
Q Consensus 100 ----~~~~~~f~~ya~~~~~~~~~~v~~w~t~NEp~~~~~~gy~~g~~~-Pg~--~~~~~~~~~~~~~~~~~~~~~h~~l 172 (380)
.++++.|++=|+.+.+.==|-|. +.+-.||+...|= |.. +.+.+ |- ..-|-+
T Consensus 151 ~~eI~~ii~~f~~AA~rA~~AGfDGVE---------Ih~ahGyLl~qFLSp~~N~RtDeY-----GG-------slENR~ 209 (362)
T PRK10605 151 LEEIPGIVNDFRQAIANAREAGFDLVE---------LHSAHGYLLHQFLSPSSNQRTDQY-----GG-------SVENRA 209 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCEEE---------EcccccchHHHhcCCcCCCCCCcC-----CC-------cHHHHH
Confidence 45778888866665543223333 4566788887653 321 11111 11 122444
Q ss_pred HHHHHHHHHHHHHhhcCCCccEEEEecCCcc---ccCCCCHHH--HHHHHHHHHHhhccchhccccC------CCChhHH
Q 016924 173 LSHATAVKLYRQNYQASQNGLIGITVSSIWA---VPKFPTVAS--EKAAYRAIDFKFGWIFNPITYG------SYPRSMQ 241 (380)
Q Consensus 173 ~Aha~a~~~~~~~~~~~~~~~iG~~~~~~~~---~P~~~~~~d--~~aa~~~~~~~~~~fldpi~~G------~YP~~~~ 241 (380)
.--...++.+|+... ++ .||+-++..-. .+...+.++ +..+......-. -+++.- .| .|+..+.
T Consensus 210 Rf~~Eiv~aVr~~vg--~~-~igvRis~~~~~~~~~~G~~~~e~~~~~~~~L~~~gi-D~i~vs-~~~~~~~~~~~~~~~ 284 (362)
T PRK10605 210 RLVLEVVDAGIAEWG--AD-RIGIRISPLGTFNNVDNGPNEEADALYLIEQLGKRGI-AYLHMS-EPDWAGGEPYSDAFR 284 (362)
T ss_pred HHHHHHHHHHHHHcC--CC-eEEEEECCccccccCCCCCCHHHHHHHHHHHHHHcCC-CEEEec-cccccCCccccHHHH
Confidence 444567777777652 33 59988876421 122234444 333443322100 122221 12 2333343
Q ss_pred HHhccc--CC-----CCChhHHhH-h-cCCcceEEee
Q 016924 242 HLVGNR--LP-----KFTKSQAEM-V-KGSVDFLGLN 269 (380)
Q Consensus 242 ~~l~~~--lp-----~~t~~d~~~-i-k~~~DFiGiN 269 (380)
+.+++. .| .+++++.+. | .|.+|++|+-
T Consensus 285 ~~ik~~~~~pv~~~G~~~~~~ae~~i~~G~~D~V~~g 321 (362)
T PRK10605 285 EKVRARFHGVIIGAGAYTAEKAETLIGKGLIDAVAFG 321 (362)
T ss_pred HHHHHHCCCCEEEeCCCCHHHHHHHHHcCCCCEEEEC
Confidence 444322 12 357777654 3 4678999885
No 198
>TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase. Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins.
Probab=27.80 E-value=2.1e+02 Score=28.13 Aligned_cols=53 Identities=13% Similarity=0.182 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHCCCeEEEEcCCCCCcHhHHHhhCCCCChhhHHHHHHHHHHH
Q 016924 61 DFYNNLINELISNGLTPFVTLFHWDTPQALEDEYGGFLSPKIVKDFGDYADLC 113 (380)
Q Consensus 61 ~~y~~~i~~l~~~gi~p~~tL~h~~~P~~l~~~~ggw~~~~~~~~f~~ya~~~ 113 (380)
+....+++.++++|+-.=+...|=.++.-+.++||+-..+..++.-.++++.+
T Consensus 108 e~v~~vv~~ak~~~ipIRIGVN~GSL~~~~~~kyg~~t~eamveSAl~~v~~l 160 (346)
T TIGR00612 108 ERVRDVVEKARDHGKAMRIGVNHGSLERRLLEKYGDATAEAMVQSALEEAAIL 160 (346)
T ss_pred HHHHHHHHHHHHCCCCEEEecCCCCCcHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 67899999999999999999999999999999987655555666666666654
No 199
>PRK00230 orotidine 5'-phosphate decarboxylase; Reviewed
Probab=27.75 E-value=92 Score=28.62 Aligned_cols=61 Identities=23% Similarity=0.352 Sum_probs=44.8
Q ss_pred ccCCcccCcHHHHHHHHHcCCCEEEeccccccccccCCCCCCccchHHHHHHHHHHHHHHCCCeEEEEcCCCCCcH
Q 016924 13 VADNFYFRYKEDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFHWDTPQ 88 (380)
Q Consensus 13 ~a~~~y~~~~eDi~l~~~lG~~~~R~si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~~tL~h~~~P~ 88 (380)
+|.|..+. ++.+++++++|....-+-+-+.-+.-.| .++|..|++.|...++.++-.|+|.
T Consensus 7 lAlD~~~~-~~~l~~~~~~~~~~~~ikvg~~~f~~~G--------------~~~i~~l~~~~~~i~~D~Kl~Di~~ 67 (230)
T PRK00230 7 VALDFPSK-EEALAFLDQLDPAVLFVKVGMELFTAGG--------------PQFVRELKQRGFKVFLDLKLHDIPN 67 (230)
T ss_pred EEcCCCCH-HHHHHHHHhcCCcccEEEEcHHHHHhcC--------------HHHHHHHHhcCCCEEEEeehhhccc
Confidence 56777755 7899999999976555555544443111 4668889888999999999889885
No 200
>cd06595 GH31_xylosidase_XylS-like This family represents an uncharacterized glycosyl hydrolase family 31 (GH31) enzyme found in bacteria and eukaryotes that is related to the XylS xylosidase of Sulfolobus solfataricus. Alpha-xylosidases catalyze the release of an alpha-xylose residue from the non-reducing end of alpha-xyloside substrates. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=27.72 E-value=2.2e+02 Score=27.14 Aligned_cols=107 Identities=17% Similarity=0.262 Sum_probs=59.6
Q ss_pred HHHHHHcCC--CEEEecccccccc--c---cCCCCCCccchHHHHHHHHHHHHHHCCCeEEEEcCCC-CC-c---Hh--H
Q 016924 25 IALVKQVGF--DSIRFSISWSRIL--P---HGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFHW-DT-P---QA--L 90 (380)
Q Consensus 25 i~l~~~lG~--~~~R~si~W~ri~--p---~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~~tL~h~-~~-P---~~--l 90 (380)
++.+++.|+ +++=+.+.|..-- + ++.-.-++|.+-..-..++|+.|++.|++.++.++-. .. + .. +
T Consensus 31 ~~~~r~~~iP~D~i~lD~dw~~~~~~~~~~~~~~~ft~d~~~FPdp~~mi~~Lh~~G~k~v~~v~P~~~~~~~~~~y~~~ 110 (292)
T cd06595 31 MDRFKKHNIPLDVLVIDMDWHVTDIPSKYGSGWTGYSWNRKLFPDPEKLLQDLHDRGLKVTLNLHPADGIRAHEDQYPEM 110 (292)
T ss_pred HHHHHHhCCCccEEEEecccccccccccccCCcceeEEChhcCCCHHHHHHHHHHCCCEEEEEeCCCcccCCCcHHHHHH
Confidence 455666555 4677777785421 0 1100124555545556899999999999999877532 11 1 11 2
Q ss_pred HHhhC-----------CCCChhhHHHHHHHHHHHHHHhCCcC-cEEEecCCCccc
Q 016924 91 EDEYG-----------GFLSPKIVKDFGDYADLCFKEFGDRV-KHWITLNEPETV 133 (380)
Q Consensus 91 ~~~~g-----------gw~~~~~~~~f~~ya~~~~~~~~~~v-~~w~t~NEp~~~ 133 (380)
.+..+ -+.+|+..+.|.+-....+...| | -+|.=+|||...
T Consensus 111 ~~~~~~~~~~~~~~~~D~tnp~a~~~w~~~~~~~~~~~G--idg~W~D~~E~~~~ 163 (292)
T cd06595 111 AKALGVDPATEGPILFDLTNPKFMDAYFDNVHRPLEKQG--VDFWWLDWQQGNRT 163 (292)
T ss_pred HHhcCCCcccCCeEEecCCCHHHHHHHHHHHHHHHHhcC--CcEEEecCCCCccc
Confidence 22111 14577666655443333333333 4 477899999764
No 201
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=27.63 E-value=5.9e+02 Score=24.88 Aligned_cols=135 Identities=15% Similarity=0.111 Sum_probs=74.6
Q ss_pred CCccchHHHHHHHHHHHHHHCCCeEEEEcCCCCCcHh----------HHHhhC-----CCCC---hhhHHHHHHHHHHHH
Q 016924 53 GGVNQQGVDFYNNLINELISNGLTPFVTLFHWDTPQA----------LEDEYG-----GFLS---PKIVKDFGDYADLCF 114 (380)
Q Consensus 53 g~~n~~~~~~y~~~i~~l~~~gi~p~~tL~h~~~P~~----------l~~~~g-----gw~~---~~~~~~f~~ya~~~~ 114 (380)
+-++.+.+..++++.+.++++|-+.++=|+|...-.. ...... .... .++++.|++=|+.+.
T Consensus 73 ~~~~d~~i~~~r~l~d~vh~~G~~i~~QL~H~G~~~~~~~~~~~ps~~~~~~~~~~p~~mt~eeI~~ii~~f~~aA~~a~ 152 (337)
T PRK13523 73 GIWDDEHIEGLHKLVTFIHDHGAKAAIQLAHAGRKAELEGDIVAPSAIPFDEKSKTPVEMTKEQIKETVLAFKQAAVRAK 152 (337)
T ss_pred ecCCHHHHHHHHHHHHHHHhcCCEEEEEccCCCCCCCCCCCccCCCCCCCCCCCCCCCcCCHHHHHHHHHHHHHHHHHHH
Confidence 4568888999999999999999999999999543100 000000 0111 257788888776665
Q ss_pred HHhCCcCcEEEecCCCccccccccccCccC-CC--CCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 016924 115 KEFGDRVKHWITLNEPETVGECGYAKGTKA-PG--RCSNYIGNCPAGNSATEPYVAAHHLILSHATAVKLYRQNYQASQN 191 (380)
Q Consensus 115 ~~~~~~v~~w~t~NEp~~~~~~gy~~g~~~-Pg--~~~~~~~~~~~~~~~~~~~~~~h~~l~Aha~a~~~~~~~~~~~~~ 191 (380)
+.==|-|. +.+-.||+...|= |. .+.+.+ |.| +-|-+.--...++.+|+.. +
T Consensus 153 ~aGfDgVe---------ih~ahGyLl~qFlSp~~N~RtD~y-----GGs-------lenR~Rf~~eii~~ir~~~----~ 207 (337)
T PRK13523 153 EAGFDVIE---------IHGAHGYLINEFLSPLSNKRTDEY-----GGS-------PENRYRFLREIIDAVKEVW----D 207 (337)
T ss_pred HcCCCEEE---------EccccchHHHHhcCCccCCcCCCC-----CCC-------HHHHHHHHHHHHHHHHHhc----C
Confidence 53112222 4456688877653 32 111101 111 2233333335556666542 4
Q ss_pred ccEEEEecCCccccCCCCHHH
Q 016924 192 GLIGITVSSIWAVPKFPTVAS 212 (380)
Q Consensus 192 ~~iG~~~~~~~~~P~~~~~~d 212 (380)
..||+-++..-..+...++++
T Consensus 208 ~~v~vRis~~d~~~~G~~~~e 228 (337)
T PRK13523 208 GPLFVRISASDYHPGGLTVQD 228 (337)
T ss_pred CCeEEEecccccCCCCCCHHH
Confidence 578888876544333334444
No 202
>TIGR00419 tim triosephosphate isomerase. Triosephosphate isomerase (tim/TPIA) is the glycolytic enzyme that catalyzes the reversible interconversion of glyceraldehyde 3-phosphate and dihydroxyacetone phosphate. The active site of the enzyme is located between residues 240-258 of the model ([AV]-Y-E-P-[LIVM]-W-[SA]-I-G-T-[GK]) with E being the active site residue. There is a slight deviation from this sequence within the archeal members of this family.
Probab=27.45 E-value=1.6e+02 Score=26.68 Aligned_cols=44 Identities=23% Similarity=0.273 Sum_probs=34.3
Q ss_pred HHHHHHcCCCEEEeccccccccccCCCCCCccchHHHHHHHHHHHHHHCCCeEEEEc
Q 016924 25 IALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTL 81 (380)
Q Consensus 25 i~l~~~lG~~~~R~si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~~tL 81 (380)
..++|++|++.+=++=|=.| +.+. | ..+-+..++++||+|+++.
T Consensus 74 ~~mLkd~G~~~viiGHSERR-f~Et------d------i~~Kv~~a~~~gl~~IvCi 117 (205)
T TIGR00419 74 AEMLKDIGAKGTLINHSERR-MKLA------D------IEKKIARLKELGLTSVVCT 117 (205)
T ss_pred HHHHHHcCCCEEEECcccCC-CCcc------H------HHHHHHHHHHCCCEEEEEE
Confidence 47899999998888877444 3221 1 4777889999999999999
No 203
>cd08576 GDPD_like_SMaseD_PLD Glycerophosphodiester phosphodiesterase-like domain of spider venom sphingomyelinases D, bacterial phospholipase D, and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase-like domain (GDPD-like) present in sphingomyelinases D (SMases D) (sphingomyelin phosphodiesterase D, EC 3.1.4.4) from spider venom, the Corynebacterium pseudotuberculosis Phospholipase D (PLD)-like protein from pathogenic bacteria, and the Ajellomyces capsulatus H143 PLD-like protein from ascomycetes. Spider SMases D and bacterial PLD proteins catalyze the Mg2+-dependent hydrolysis of sphingomyelin producing choline and ceramide 1-phosphate (C1P), which possess a number of biological functions, such as regulating cell proliferation and apoptosis, participating in inflammatory responses, and playing a key role in phagocytosis. In the presence of Mg2+, SMases D can function as lysophospholipase D and hydrolyze lysophosphatidylcholine (LPC) to choline
Probab=27.30 E-value=5.4e+02 Score=24.38 Aligned_cols=110 Identities=8% Similarity=0.096 Sum_probs=70.8
Q ss_pred cccCcHHHHHHHHHcCCCEEEeccc-cccccccCCCC----CCc-cchHHHHHHHHHHHHHHCC---CeEEEEcCCCCCc
Q 016924 17 FYFRYKEDIALVKQVGFDSIRFSIS-WSRILPHGNIS----GGV-NQQGVDFYNNLINELISNG---LTPFVTLFHWDTP 87 (380)
Q Consensus 17 ~y~~~~eDi~l~~~lG~~~~R~si~-W~ri~p~~~~~----g~~-n~~~~~~y~~~i~~l~~~g---i~p~~tL~h~~~P 87 (380)
|.=.=.+.|+..-++|.|++=+.|. |+.=.|.-+-- ... +....+..+.+++.+++.- -+--++|.-+|+
T Consensus 5 HmVn~~~~v~~~l~~GANaiE~Dv~f~~~~~~~~~~Hg~pcdc~r~c~~~~~f~~~l~~~r~~ttpg~~~~l~lv~lDl- 83 (265)
T cd08576 5 HMVNDLEGVDDALDHGANAIEIDVTFWSNGTGWWADHDVPCDCFRGCTAREMFDEILDYRRNGTTPGFRENLIFVWLDL- 83 (265)
T ss_pred hhhccHHHHHHHHHcCCCceeEEEEEccCCcEEEeeCCCccccccCCcHHHHHHHHHHHHHhcCCCCccceeEEEEEEc-
Confidence 3334467788899999999999985 32112211000 111 3344567788888887652 222333322333
Q ss_pred HhHHHhhCCCCChhhHHHHHHHHHHHHHHhCCc---CcEEEecCCCcc
Q 016924 88 QALEDEYGGFLSPKIVKDFGDYADLCFKEFGDR---VKHWITLNEPET 132 (380)
Q Consensus 88 ~~l~~~~ggw~~~~~~~~f~~ya~~~~~~~~~~---v~~w~t~NEp~~ 132 (380)
|-+++......+...+.|+.+.++|+.. +..++.+..|.+
T Consensus 84 -----K~~~~~~~~~~~ag~~la~~ll~~~w~~~~~~ra~~~~s~~~~ 126 (265)
T cd08576 84 -----KNPDLCGECSINAGRDLARKLLEPYWNGGSGARALYGFSIPSI 126 (265)
T ss_pred -----CCCCcCHHHHHHHHHHHHHHHHHHhhcCCCCeEEEEEEEeccc
Confidence 4467777888999999999999999965 777788777754
No 204
>PRK15108 biotin synthase; Provisional
Probab=27.23 E-value=1.6e+02 Score=28.98 Aligned_cols=57 Identities=9% Similarity=0.125 Sum_probs=40.1
Q ss_pred CcHHHHHHHHHcCCCEEEeccccccccccCCCCCCc-cchHHHHHHHHHHHHHHCCCeEEEEc
Q 016924 20 RYKEDIALVKQVGFDSIRFSISWSRILPHGNISGGV-NQQGVDFYNNLINELISNGLTPFVTL 81 (380)
Q Consensus 20 ~~~eDi~l~~~lG~~~~R~si~W~ri~p~~~~~g~~-n~~~~~~y~~~i~~l~~~gi~p~~tL 81 (380)
.-+|.++.||++|++.|-.+++ + -|... ..+ ....++..-+.++.+++.|++...++
T Consensus 134 ls~e~l~~LkeAGld~~n~~le-T--~p~~f--~~I~~~~~~~~rl~~i~~a~~~G~~v~sg~ 191 (345)
T PRK15108 134 LSESQAQRLANAGLDYYNHNLD-T--SPEFY--GNIITTRTYQERLDTLEKVRDAGIKVCSGG 191 (345)
T ss_pred CCHHHHHHHHHcCCCEEeeccc-c--ChHhc--CCCCCCCCHHHHHHHHHHHHHcCCceeeEE
Confidence 4589999999999999999885 2 13321 111 23345667788888899999776553
No 205
>KOG2900 consensus Biotin synthase [Coenzyme transport and metabolism]
Probab=27.06 E-value=1.3e+02 Score=28.43 Aligned_cols=61 Identities=21% Similarity=0.195 Sum_probs=45.2
Q ss_pred HHHHHHcCCCEEEeccccccccccCCCCCCccchHHHHHHHHHHHHHHCCCeEEEEcCCCCCcHhHHHh
Q 016924 25 IALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFHWDTPQALEDE 93 (380)
Q Consensus 25 i~l~~~lG~~~~R~si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~~tL~h~~~P~~l~~~ 93 (380)
.+..|+.|-.-|=++-.|....-.. .++....++|.+.+..||++.+||--.+--+..+-+
T Consensus 126 Ak~AK~~GSTRFCmGaAWRD~~GRk--------~~fk~IlE~ikevr~MgmEvCvTLGMv~~qQAkeLK 186 (380)
T KOG2900|consen 126 AKEAKRNGSTRFCMGAAWRDMKGRK--------SAFKRILEMIKEVRDMGMEVCVTLGMVDQQQAKELK 186 (380)
T ss_pred HHHHHhcCCceeecchhhhhhccch--------hHHHHHHHHHHHHHcCCceeeeeeccccHHHHHHHH
Confidence 3566788888777788998775332 346778999999999999999999765555544433
No 206
>TIGR01589 A_thal_3526 uncharacterized plant-specific domain TIGR01589. This model represents an uncharacterized plant-specific domain 57 residues in length. It is found toward the N-terminus of most proteins that contain it. Examples include at least 10 proteins from Arabidopsis thaliana and at least one from Oryza sativa.
Probab=26.86 E-value=81 Score=22.53 Aligned_cols=36 Identities=17% Similarity=0.092 Sum_probs=24.3
Q ss_pred HHHHHHHHH-CCCeEEEEcCCCCCcHhHHHhhCCCCChhhHHHHHHHH
Q 016924 64 NNLINELIS-NGLTPFVTLFHWDTPQALEDEYGGFLSPKIVKDFGDYA 110 (380)
Q Consensus 64 ~~~i~~l~~-~gi~p~~tL~h~~~P~~l~~~~ggw~~~~~~~~f~~ya 110 (380)
+++++.|.+ .||+|.+|. ..|-.- -+++.+-|..|-
T Consensus 19 ~E~v~~L~~~a~I~P~~T~-----~VW~~L------ekeN~eFF~aY~ 55 (57)
T TIGR01589 19 EETVSFLFENAGISPKFTR-----FVWYLL------EKENADFFRCYK 55 (57)
T ss_pred HHHHHHHHHHcCCCchhHH-----HHHHHH------HHHHHHHHHHHh
Confidence 567777764 899999886 355432 245667787774
No 207
>PTZ00333 triosephosphate isomerase; Provisional
Probab=26.62 E-value=1.8e+02 Score=27.44 Aligned_cols=49 Identities=18% Similarity=0.297 Sum_probs=35.9
Q ss_pred HHHHHHcCCCEEEeccccccccccCCCCCCccchHHHHHHHHHHHHHHCCCeEEEEcC
Q 016924 25 IALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLF 82 (380)
Q Consensus 25 i~l~~~lG~~~~R~si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~~tL~ 82 (380)
..+++++|++.+=++=|=.|.. - |+=| +...+-+..++++||.|+++.-
T Consensus 82 ~~mL~d~G~~~viiGHSERR~~-f----~Etd----~~I~~Kv~~al~~gl~pIlCvG 130 (255)
T PTZ00333 82 AEMLKDLGINWTILGHSERRQY-F----GETN----EIVAQKVKNALENGLKVILCIG 130 (255)
T ss_pred HHHHHHcCCCEEEECcccccCc-C----CCCc----HHHHHHHHHHHHCCCEEEEEcC
Confidence 4889999999988887622221 1 1122 4567888899999999999983
No 208
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=26.05 E-value=1.1e+02 Score=28.36 Aligned_cols=57 Identities=12% Similarity=0.191 Sum_probs=37.0
Q ss_pred cHHHHHHHHHcCCCEEEeccccccc-cccCCCCCCccchHHHHHHHHHHHHHHCCCeEEEEc
Q 016924 21 YKEDIALVKQVGFDSIRFSISWSRI-LPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTL 81 (380)
Q Consensus 21 ~~eDi~l~~~lG~~~~R~si~W~ri-~p~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~~tL 81 (380)
.+.=|+.+++||++.+|+. ..... .|.. ...-...++.++.+++.+.++||+..+=.
T Consensus 96 ~~~~i~~a~~lG~~~v~~~-~~~~~~~~~~---~~~~~~~~~~l~~l~~~a~~~gv~l~lE~ 153 (284)
T PRK13210 96 MKKAIRLAQDLGIRTIQLA-GYDVYYEEKS---EETRQRFIEGLAWAVEQAAAAQVMLAVEI 153 (284)
T ss_pred HHHHHHHHHHhCCCEEEEC-Cccccccccc---HHHHHHHHHHHHHHHHHHHHhCCEEEEEe
Confidence 4556788999999999974 11111 1111 11113446678888999999999887754
No 209
>COG5520 O-Glycosyl hydrolase [Cell envelope biogenesis, outer membrane]
Probab=25.95 E-value=2.3e+02 Score=28.22 Aligned_cols=91 Identities=26% Similarity=0.518 Sum_probs=54.6
Q ss_pred HcCCCEEEeccccccccccCCCCCCccchHHHHHHHH--HHHHHHCCCeEEEEcCCCCCcHhHHHhh---CC---CCChh
Q 016924 30 QVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNL--INELISNGLTPFVTLFHWDTPQALEDEY---GG---FLSPK 101 (380)
Q Consensus 30 ~lG~~~~R~si~W~ri~p~~~~~g~~n~~~~~~y~~~--i~~l~~~gi~p~~tL~h~~~P~~l~~~~---gg---w~~~~ 101 (380)
++|+...|+.|.=.+.-- +|..|. +|+++ -...+..|+++|.+- |..|.|.-... || =+.+
T Consensus 77 ~lg~si~Rv~I~~ndfsl----~g~~d~----w~kels~Ak~~in~g~ivfASP--WspPa~Mktt~~~ngg~~g~Lk~- 145 (433)
T COG5520 77 QLGFSILRVPIDSNDFSL----GGSADN----WYKELSTAKSAINPGMIVFASP--WSPPASMKTTNNRNGGNAGRLKY- 145 (433)
T ss_pred ccCceEEEEEeccccccc----CCCcch----hhhhcccchhhcCCCcEEEecC--CCCchhhhhccCcCCccccccch-
Confidence 488889998886333321 245552 34443 233678899999887 89999986531 34 3333
Q ss_pred hHHHHHHHHHHHH---HHhCC---cCcEEEecCCCccc
Q 016924 102 IVKDFGDYADLCF---KEFGD---RVKHWITLNEPETV 133 (380)
Q Consensus 102 ~~~~f~~ya~~~~---~~~~~---~v~~w~t~NEp~~~ 133 (380)
+.++.||+.+. ..+.+ -+..--+=|||.-.
T Consensus 146 --e~Ya~yA~~l~~fv~~m~~nGvnlyalSVQNEPd~~ 181 (433)
T COG5520 146 --EKYADYADYLNDFVLEMKNNGVNLYALSVQNEPDYA 181 (433)
T ss_pred --hHhHHHHHHHHHHHHHHHhCCCceeEEeeccCCccc
Confidence 44555555443 34433 34555789999753
No 210
>TIGR00355 purH phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase. Involved in purine ribonucleotide biosynthesis. The IMP cyclohydrolase activity is in the N-terminal region.
Probab=25.78 E-value=92 Score=32.30 Aligned_cols=56 Identities=20% Similarity=0.442 Sum_probs=45.4
Q ss_pred CcccCCcccCcHHHHHHHHHcCCCEEEeccccccccccCCCCCCccchHHHHHHHHHHHHHHCCCeEEEE-cCCC
Q 016924 11 GDVADNFYFRYKEDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVT-LFHW 84 (380)
Q Consensus 11 ~~~a~~~y~~~~eDi~l~~~lG~~~~R~si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~~t-L~h~ 84 (380)
.-.|+|-+..+++-++.+++.|++++ |+|-| .+.- +++|+.+.++||..+.| .-||
T Consensus 453 ~vlASDAFFPF~D~ve~aa~aGi~aI--------iQPGG----SiRD------~evI~aa~e~giaMvfTg~RhF 509 (511)
T TIGR00355 453 SSLASDAFFPFRDGVEEAAAAGITCI--------IQPGG----SMRD------EDSIWAADEHGIVMVFTGMRHF 509 (511)
T ss_pred cEEEeccccCCCccHHHHHHcCCEEE--------EcCCC----CCCc------HHHHHHHHHhCCEEEECCCCCC
Confidence 45789999999999999999999875 77865 4443 68999999999998887 3344
No 211
>PRK10426 alpha-glucosidase; Provisional
Probab=25.78 E-value=6.3e+02 Score=27.15 Aligned_cols=108 Identities=15% Similarity=0.223 Sum_probs=63.7
Q ss_pred cHHHHHHHHHcCCCEEEecc-ccccccccCC--C---CCCccchHHHHHHHHHHHHHHCCCeEEEEcCCC---CCcHhHH
Q 016924 21 YKEDIALVKQVGFDSIRFSI-SWSRILPHGN--I---SGGVNQQGVDFYNNLINELISNGLTPFVTLFHW---DTPQALE 91 (380)
Q Consensus 21 ~~eDi~l~~~lG~~~~R~si-~W~ri~p~~~--~---~g~~n~~~~~~y~~~i~~l~~~gi~p~~tL~h~---~~P~~l~ 91 (380)
..+-++.+++.|+..==+-+ .|........ . +-.+|.+-.--.+++|+.|++.|+++++.+.=+ +.|.+-+
T Consensus 223 v~~v~~~~r~~~IP~d~i~lddw~~~~~~~~g~~~~~~~~~d~~~FPdp~~mi~~L~~~G~k~v~~i~P~v~~~~~~y~e 302 (635)
T PRK10426 223 VQKKLDTMRNAGVKVNGIWAQDWSGIRMTSFGKRLMWNWKWDSERYPQLDSRIKQLNEEGIQFLGYINPYLASDGDLCEE 302 (635)
T ss_pred HHHHHHHHHHcCCCeeEEEEecccccccccccccccccceEChhhCCCHHHHHHHHHHCCCEEEEEEcCccCCCCHHHHH
Confidence 34456788888876433322 5764422110 0 013354433345899999999999998876532 3333321
Q ss_pred Hh-------------h--------CC---CCChhhHHHHHHHHHHHHHHhCCcCcEE-EecCCC
Q 016924 92 DE-------------Y--------GG---FLSPKIVKDFGDYADLCFKEFGDRVKHW-ITLNEP 130 (380)
Q Consensus 92 ~~-------------~--------gg---w~~~~~~~~f~~ya~~~~~~~~~~v~~w-~t~NEp 130 (380)
.+ | ++ +.||+..++|.+..+......| |+.| .=+||+
T Consensus 303 ~~~~gy~vk~~~g~~~~~~~~~~~~~~~Dftnp~ar~Ww~~~~~~~~~~~G--vdg~w~D~~E~ 364 (635)
T PRK10426 303 AAEKGYLAKDADGGDYLVEFGEFYAGVVDLTNPEAYEWFKEVIKKNMIGLG--CSGWMADFGEY 364 (635)
T ss_pred HHHCCcEEECCCCCEEEeEecCCCceeecCCCHHHHHHHHHHHHHHHhhcC--CCEEeeeCCCC
Confidence 11 0 11 5789999999887765555555 6554 789994
No 212
>COG2100 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=25.72 E-value=3e+02 Score=27.06 Aligned_cols=86 Identities=16% Similarity=0.211 Sum_probs=60.3
Q ss_pred CCcccCcHHHHHHHHHcCCCEEEeccccccccccC--CCCCCccchHHHHHHHHHHHHHHCCCeEEEEcCCCCCcHhHHH
Q 016924 15 DNFYFRYKEDIALVKQVGFDSIRFSISWSRILPHG--NISGGVNQQGVDFYNNLINELISNGLTPFVTLFHWDTPQALED 92 (380)
Q Consensus 15 ~~~y~~~~eDi~l~~~lG~~~~R~si~W~ri~p~~--~~~g~~n~~~~~~y~~~i~~l~~~gi~p~~tL~h~~~P~~l~~ 92 (380)
++-+-.-++=++.+.+.|++-+-+|++ .+-|.. .+.| ..+-.+++--++.+.+.+.||.++++ |.|+
T Consensus 197 Tng~~L~~~lv~eLeeAGLdRiNlSv~--aLDpk~Ak~L~G-~~dYdv~kvle~aE~i~~a~idvlIa------Pv~l-- 265 (414)
T COG2100 197 TNGVLLSKKLVDELEEAGLDRINLSVD--ALDPKLAKMLAG-RKDYDVKKVLEVAEYIANAGIDVLIA------PVWL-- 265 (414)
T ss_pred eCceeccHHHHHHHHHhCCceEEeecc--cCCHHHHHHhcC-ccccCHHHHHHHHHHHHhCCCCEEEe------eeec--
Confidence 344555677789999999998888875 233321 1123 22334688899999999999999987 7776
Q ss_pred hhCCCCChhhHHHHHHHHHHHH
Q 016924 93 EYGGFLSPKIVKDFGDYADLCF 114 (380)
Q Consensus 93 ~~ggw~~~~~~~~f~~ya~~~~ 114 (380)
.|. |.+-...+.+||+.+-
T Consensus 266 --PG~-ND~E~~~iIe~A~~iG 284 (414)
T COG2100 266 --PGV-NDDEMPKIIEWAREIG 284 (414)
T ss_pred --CCc-ChHHHHHHHHHHHHhC
Confidence 343 5556688899988763
No 213
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=25.67 E-value=3.6e+02 Score=25.01 Aligned_cols=55 Identities=13% Similarity=0.194 Sum_probs=39.0
Q ss_pred cCcHHHHHHHHHcCCCEEEeccccccccccCCCCCCccchHHHHHHHHHHHHHHC-CCeEEEE
Q 016924 19 FRYKEDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISN-GLTPFVT 80 (380)
Q Consensus 19 ~~~~eDi~l~~~lG~~~~R~si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~-gi~p~~t 80 (380)
..+++-+++++++|++.+=+.+......+.. ..+. +..+.+.+.+.++ |+...+.
T Consensus 10 ~~l~~~l~~a~~~G~d~vEl~~~~~~~~~~~----~~~~---~~~~~l~~~~~~~~~~~i~~~ 65 (279)
T cd00019 10 FGLENALKRAKEIGFDTVAMFLGNPRSWLSR----PLKK---ERAEKFKAIAEEGPSICLSVH 65 (279)
T ss_pred ccHHHHHHHHHHcCCCEEEEEcCCCCccCCC----CCCH---HHHHHHHHHHHHcCCCcEEEE
Confidence 5789999999999999998888765444432 1233 4567777777788 6665543
No 214
>PRK12822 phospho-2-dehydro-3-deoxyheptonate aldolase; Provisional
Probab=25.64 E-value=1.5e+02 Score=29.34 Aligned_cols=77 Identities=12% Similarity=0.174 Sum_probs=52.3
Q ss_pred CcccCcHHHHHHHHHcCCCE-------E-------EeccccccccccCCCCCCcc-chHHHHHHHHHHHHHHCCCeEEEE
Q 016924 16 NFYFRYKEDIALVKQVGFDS-------I-------RFSISWSRILPHGNISGGVN-QQGVDFYNNLINELISNGLTPFVT 80 (380)
Q Consensus 16 ~~y~~~~eDi~l~~~lG~~~-------~-------R~si~W~ri~p~~~~~g~~n-~~~~~~y~~~i~~l~~~gi~p~~t 80 (380)
+....-.|-.+.+|+++.+. . |.+..|.-+.-++..+|..| .+||...++++..+.+.|+...--
T Consensus 64 hd~~~aleyA~rLk~l~~~~~d~l~ivmR~y~eKPRTs~gwkGl~~DP~ldgs~~i~~GL~i~R~ll~~~~~~GlPvatE 143 (356)
T PRK12822 64 HDPQAALEYAKRLAVLQHQYLDQLYIVMRTYFEKPRTRKGWKGLIFDPDLDGSNDIEKGLRLARQLLLSINTLGLATATE 143 (356)
T ss_pred CCHHHHHHHHHHHHHHHHhhcccEEEEEEeccccCCCCCCccccccCCCCCCCccHHHHHHHHHHHHHHHHHhCCCEEEe
Confidence 33344455566677777663 3 66677777764444467787 899999999999999999977655
Q ss_pred cCCCCCcHhHHH
Q 016924 81 LFHWDTPQALED 92 (380)
Q Consensus 81 L~h~~~P~~l~~ 92 (380)
+..--.|+.+.+
T Consensus 144 ~ld~~~~qy~~D 155 (356)
T PRK12822 144 FLDTTSFPYIAD 155 (356)
T ss_pred ecccccHHHHHH
Confidence 554445555544
No 215
>PF07071 DUF1341: Protein of unknown function (DUF1341); InterPro: IPR010763 Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.; PDB: 3NZR_D 3LM7_A 3M0Z_B 3M6Y_A 3N73_A 3MUX_A.
Probab=25.57 E-value=1.7e+02 Score=26.59 Aligned_cols=67 Identities=27% Similarity=0.527 Sum_probs=40.4
Q ss_pred cCcHHHHHHHHHcCCCEEEeccccccccccCCCCCCccchHHHHHHHHHHHHHHCCCeEEEEcCCCCCcHhHHHhhCCCC
Q 016924 19 FRYKEDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFHWDTPQALEDEYGGFL 98 (380)
Q Consensus 19 ~~~~eDi~l~~~lG~~~~R~si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~~tL~h~~~P~~l~~~~ggw~ 98 (380)
=.-+.-++++++||.+++.| +|-+ |. +-++-|..+...|.++||..= | -||..
T Consensus 135 V~vetAiaml~dmG~~SiKf-------fPm~---Gl---~~leE~~avAkA~a~~g~~lE--------P------TGGId 187 (218)
T PF07071_consen 135 VPVETAIAMLKDMGGSSIKF-------FPMG---GL---KHLEELKAVAKACARNGFTLE--------P------TGGID 187 (218)
T ss_dssp EEHHHHHHHHHHTT--EEEE----------T---TT---TTHHHHHHHHHHHHHCT-EEE--------E------BSS--
T ss_pred ccHHHHHHHHHHcCCCeeeE-------eecC---Cc---ccHHHHHHHHHHHHHcCceeC--------C------cCCcC
Confidence 34567799999999999987 5765 32 224558889999999998431 2 26653
Q ss_pred ChhhHHHHHHHHHHHHHH
Q 016924 99 SPKIVKDFGDYADLCFKE 116 (380)
Q Consensus 99 ~~~~~~~f~~ya~~~~~~ 116 (380)
.+.|..-.+.|.+.
T Consensus 188 ----l~N~~~I~~i~l~a 201 (218)
T PF07071_consen 188 ----LDNFEEIVKICLDA 201 (218)
T ss_dssp ----TTTHHHHHHHHHHT
T ss_pred ----HHHHHHHHHHHHHc
Confidence 34567777766654
No 216
>PRK14567 triosephosphate isomerase; Provisional
Probab=25.54 E-value=2e+02 Score=27.00 Aligned_cols=49 Identities=20% Similarity=0.293 Sum_probs=35.5
Q ss_pred HHHHHHcCCCEEEeccccccccccCCCCCCccchHHHHHHHHHHHHHHCCCeEEEEcC
Q 016924 25 IALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLF 82 (380)
Q Consensus 25 i~l~~~lG~~~~R~si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~~tL~ 82 (380)
..++|++|++.+=++=|=.|.. - ++-| +...+-+..++++||+|++++-
T Consensus 78 ~~mLkd~G~~yviiGHSERR~~-f----~Etd----~~v~~Kv~~al~~gl~pI~CiG 126 (253)
T PRK14567 78 ARMLEDIGCDYLLIGHSERRSL-F----AESD----EDVFKKLNKIIDTTITPVVCIG 126 (253)
T ss_pred HHHHHHcCCCEEEECcccccCc-c----CCCH----HHHHHHHHHHHHCCCEEEEEcC
Confidence 4789999999988887633321 1 2223 4467778899999999999983
No 217
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=25.51 E-value=2.8e+02 Score=29.48 Aligned_cols=93 Identities=13% Similarity=0.063 Sum_probs=52.8
Q ss_pred cHHHHHHHHHcCCCEEEeccccccccccCCCCCCccchHHHHHHHHHHHHHHCCCeEEEEcCCCCCcH----hHHH----
Q 016924 21 YKEDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFHWDTPQ----ALED---- 92 (380)
Q Consensus 21 ~~eDi~l~~~lG~~~~R~si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~~tL~h~~~P~----~l~~---- 92 (380)
-++|++++++.|++.+|+..+-+.+ +-....++.++++|..+.+++..-..|. .+.+
T Consensus 98 v~~~v~~A~~~Gvd~irif~~lnd~---------------~n~~~~i~~ak~~G~~v~~~i~~t~~p~~t~~~~~~~a~~ 162 (592)
T PRK09282 98 VEKFVEKAAENGIDIFRIFDALNDV---------------RNMEVAIKAAKKAGAHVQGTISYTTSPVHTIEKYVELAKE 162 (592)
T ss_pred hHHHHHHHHHCCCCEEEEEEecChH---------------HHHHHHHHHHHHcCCEEEEEEEeccCCCCCHHHHHHHHHH
Confidence 3456789999999999999765433 1235556666777777666654322231 1110
Q ss_pred --h----------hCCCCChhhHHHHHHHHHHHHHHhCCcCcEEEecCCCcc
Q 016924 93 --E----------YGGFLSPKIVKDFGDYADLCFKEFGDRVKHWITLNEPET 132 (380)
Q Consensus 93 --~----------~ggw~~~~~~~~f~~ya~~~~~~~~~~v~~w~t~NEp~~ 132 (380)
+ -.|-..| ....+.++.+-++++ ..-...+-|-..+
T Consensus 163 l~~~Gad~I~i~Dt~G~~~P---~~~~~lv~~lk~~~~-~pi~~H~Hnt~Gl 210 (592)
T PRK09282 163 LEEMGCDSICIKDMAGLLTP---YAAYELVKALKEEVD-LPVQLHSHCTSGL 210 (592)
T ss_pred HHHcCCCEEEECCcCCCcCH---HHHHHHHHHHHHhCC-CeEEEEEcCCCCc
Confidence 0 1344454 445556666667775 2223456666554
No 218
>TIGR02351 thiH thiazole biosynthesis protein ThiH. Members this protein family are the ThiH protein of thiamine biosynthesis, a homolog of the BioB protein of biotin biosynthesis. Genes for the this protein generally are found in operons with other thiamin biosynthesis genes.
Probab=25.49 E-value=4.7e+02 Score=25.76 Aligned_cols=100 Identities=9% Similarity=0.038 Sum_probs=55.5
Q ss_pred cCcHHHHHHHHHcCCCEEEecccc--ccccccCCCCCCccchHHHHHHHHHHHHHHCCCeE-EEEcCCCCCcHhHHHhhC
Q 016924 19 FRYKEDIALVKQVGFDSIRFSISW--SRILPHGNISGGVNQQGVDFYNNLINELISNGLTP-FVTLFHWDTPQALEDEYG 95 (380)
Q Consensus 19 ~~~~eDi~l~~~lG~~~~R~si~W--~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p-~~tL~h~~~P~~l~~~~g 95 (380)
..-.++++.+|++|++.+.++++= ...++.-...|. ....+.--+.++.+++.||+. -+.+. +++|.|..+
T Consensus 159 ~lt~e~~~~Lk~aGv~r~~i~lET~~~~~y~~i~~~g~--~h~~~~rl~~i~~a~~aG~~~v~~g~i-~Gl~e~~~d--- 232 (366)
T TIGR02351 159 PLNEEEYKKLVEAGLDGVTVYQETYNEKKYKKHHLAGK--KKDFRYRLNTPERAAKAGMRKIGIGAL-LGLDDWRTD--- 232 (366)
T ss_pred cCCHHHHHHHHHcCCCEEEEEeecCCHHHHHhcCcCCC--CCCHHHHHHHHHHHHHcCCCeeceeEE-EeCchhHHH---
Confidence 467889999999999988888742 223222100011 011233456788899999983 33332 355543322
Q ss_pred CCCChhhHHHHHHHHHHHHHHhCCcCcEEEecCCCcc
Q 016924 96 GFLSPKIVKDFGDYADLCFKEFGDRVKHWITLNEPET 132 (380)
Q Consensus 96 gw~~~~~~~~f~~ya~~~~~~~~~~v~~w~t~NEp~~ 132 (380)
.-..+..++.+-.+|.+ ....+.+|+-+-
T Consensus 233 -------~~~~a~~l~~L~~~~~~-~~~sv~~~~l~P 261 (366)
T TIGR02351 233 -------AFFTAYHLRYLQKKYWK-TEISISVPRLRP 261 (366)
T ss_pred -------HHHHHHHHHHHHHHcCC-CCcccccccccc
Confidence 22344444555455543 334577787553
No 219
>cd00311 TIM Triosephosphate isomerase (TIM) is a glycolytic enzyme that catalyzes the interconversion of dihydroxyacetone phosphate and D-glyceraldehyde-3-phosphate. The reaction is very efficient and requires neither cofactors nor metal ions. TIM, usually homodimeric, but in some organisms tetrameric, is ubiqitous and conserved in function across eukaryotes, bacteria and archaea.
Probab=25.27 E-value=1.8e+02 Score=27.03 Aligned_cols=48 Identities=17% Similarity=0.246 Sum_probs=36.2
Q ss_pred HHHHHHcCCCEEEeccccccccccCCCCCCccchHHHHHHHHHHHHHHCCCeEEEEc
Q 016924 25 IALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTL 81 (380)
Q Consensus 25 i~l~~~lG~~~~R~si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~~tL 81 (380)
.+++|++|++.+=++=|=.|-. +++ .-+...+-+..++++||+|+++.
T Consensus 77 ~~mL~d~G~~~viiGHSERR~~--------f~E-t~~~i~~Kv~~a~~~gl~pIvCi 124 (242)
T cd00311 77 AEMLKDAGAKYVIIGHSERRQY--------FGE-TDEDVAKKVKAALEAGLTPILCV 124 (242)
T ss_pred HHHHHHcCCCEEEeCcccccCc--------CCC-CcHHHHHHHHHHHHCCCEEEEEe
Confidence 5889999999988887622221 121 12567888999999999999998
No 220
>COG3661 AguA Alpha-glucuronidase [Carbohydrate transport and metabolism]
Probab=25.26 E-value=4.5e+02 Score=26.95 Aligned_cols=89 Identities=16% Similarity=0.226 Sum_probs=59.9
Q ss_pred cCcHHHHHHHHHcCCCEEEeccccccccccCCCCCCccchHHHHHHHHHHHHHHCCCeEEEEcCCCCCcHhHHHhhCCC-
Q 016924 19 FRYKEDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFHWDTPQALEDEYGGF- 97 (380)
Q Consensus 19 ~~~~eDi~l~~~lG~~~~R~si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~~tL~h~~~P~~l~~~~ggw- 97 (380)
.|.++-..+++++|+|..-|.=- -+-... ..-++..-|.....+-|-.+..||++.+++. |..|..| ||.
T Consensus 183 qR~kDYAR~laSiGINg~v~NNV--Nvk~~e--~~lit~~fl~k~aklAdiFR~YGIK~yLsin-faSP~~l----GgL~ 253 (684)
T COG3661 183 QRMKDYARALASIGINGTVLNNV--NVKKAE--SYLITAPFLAKAAKLADIFRPYGIKVYLSIN-FASPMEL----GGLK 253 (684)
T ss_pred HHHHHHHHHHhhcCcceEEeccc--ccchhh--hheechHhHHHHHHHHHHhhhccceEEEEec-cCCcccc----CCcC
Confidence 56777788999999998766421 000011 1224445567778889999999999999986 7788754 664
Q ss_pred ----CChhhHHHHHHHHHHHHHH
Q 016924 98 ----LSPKIVKDFGDYADLCFKE 116 (380)
Q Consensus 98 ----~~~~~~~~f~~ya~~~~~~ 116 (380)
+.+.+..++.+=|+.+.+-
T Consensus 254 TADPLDe~VrawWkeka~~IY~y 276 (684)
T COG3661 254 TADPLDEAVRAWWKEKADEIYKY 276 (684)
T ss_pred cCCcccHHHHHHHHHHHHHHHHh
Confidence 4566666666666666554
No 221
>PF04055 Radical_SAM: Radical SAM superfamily; InterPro: IPR007197 Radical SAM proteins catalyze diverse reactions, including unusual methylations, isomerization, sulphur insertion, ring formation, anaerobic oxidation and protein radical formation. Evidence exists that these proteins generate a radical species by reductive cleavage of S:-adenosylmethionine (SAM) through an unusual Fe-S centre [, ].; GO: 0003824 catalytic activity, 0051536 iron-sulfur cluster binding; PDB: 2A5H_D 3T7V_A 3C8F_A 3CB8_A 2FB2_A 2FB3_A 3CIX_A 3IIX_A 3IIZ_A 3CIW_A ....
Probab=25.13 E-value=1.1e+02 Score=25.17 Aligned_cols=51 Identities=18% Similarity=0.276 Sum_probs=36.7
Q ss_pred HHHHHHHHHcCCCEEEeccc-cccc-cccCCCCCCc-cchHHHHHHHHHHHHHHCCCeE
Q 016924 22 KEDIALVKQVGFDSIRFSIS-WSRI-LPHGNISGGV-NQQGVDFYNNLINELISNGLTP 77 (380)
Q Consensus 22 ~eDi~l~~~lG~~~~R~si~-W~ri-~p~~~~~g~~-n~~~~~~y~~~i~~l~~~gi~p 77 (380)
++.++.++++|++.+++|+. -..- ... .. .....+..-+.++.|+++|+.+
T Consensus 90 ~~~l~~l~~~~~~~i~~~l~s~~~~~~~~-----~~~~~~~~~~~~~~l~~l~~~g~~~ 143 (166)
T PF04055_consen 90 EELLDELKKLGVDRIRISLESLDEESVLR-----IINRGKSFERVLEALERLKEAGIPR 143 (166)
T ss_dssp HHHHHHHHHTTCSEEEEEEBSSSHHHHHH-----HHSSTSHHHHHHHHHHHHHHTTSET
T ss_pred HHHHHHHHhcCccEEecccccCCHHHhhh-----hhcCCCCHHHHHHHHHHHHHcCCCc
Confidence 88999999999999999995 2211 111 11 1234567788999999999985
No 222
>PRK06256 biotin synthase; Validated
Probab=24.95 E-value=1.2e+02 Score=29.32 Aligned_cols=57 Identities=12% Similarity=0.108 Sum_probs=39.1
Q ss_pred CcHHHHHHHHHcCCCEEEeccc-cccccccCCCCCCccchHHHHHHHHHHHHHHCCCeEEEEc
Q 016924 20 RYKEDIALVKQVGFDSIRFSIS-WSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTL 81 (380)
Q Consensus 20 ~~~eDi~l~~~lG~~~~R~si~-W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~~tL 81 (380)
.-+|.++.||++|++.+-++++ =.++++.- ...- .++.+-+.|+.+++.||++..++
T Consensus 150 l~~e~l~~LkeaG~~~v~~~lEts~~~~~~i--~~~~---t~~~~i~~i~~a~~~Gi~v~~~~ 207 (336)
T PRK06256 150 LTEEQAERLKEAGVDRYNHNLETSRSYFPNV--VTTH---TYEDRIDTCEMVKAAGIEPCSGG 207 (336)
T ss_pred CCHHHHHHHHHhCCCEEecCCccCHHHHhhc--CCCC---CHHHHHHHHHHHHHcCCeeccCe
Confidence 5578899999999999988763 12333332 1111 24567789999999999865543
No 223
>KOG0470 consensus 1,4-alpha-glucan branching enzyme/starch branching enzyme II [Carbohydrate transport and metabolism]
Probab=24.83 E-value=1e+02 Score=33.37 Aligned_cols=65 Identities=18% Similarity=0.480 Sum_probs=43.5
Q ss_pred ccCcHHH-HHHHHHcCCCEEEec-c-cc-ccc-----------cccCCCCCCcc-chHHHHHHHHHHHHHHCCCeEEEEc
Q 016924 18 YFRYKED-IALVKQVGFDSIRFS-I-SW-SRI-----------LPHGNISGGVN-QQGVDFYNNLINELISNGLTPFVTL 81 (380)
Q Consensus 18 y~~~~eD-i~l~~~lG~~~~R~s-i-~W-~ri-----------~p~~~~~g~~n-~~~~~~y~~~i~~l~~~gi~p~~tL 81 (380)
|.-+.|+ +..+|+||.|++-+= | +- +.. -|... -|+.+ ..-+.=++.||+++.+.||++++.+
T Consensus 253 Y~~FteKvlphlK~LG~NaiqLmpi~Ef~~~~~s~GY~~~nFFapssr-Ygt~~s~~ri~efK~lVd~aHs~GI~VlLDV 331 (757)
T KOG0470|consen 253 YLGFTEKVLPHLKKLGYNAIQLMPIFEFGHYYASWGYQVTNFFAPSSR-YGTPESPCRINEFKELVDKAHSLGIEVLLDV 331 (757)
T ss_pred hhhhhhhhhhHHHHhCccceEEeehhhhhhhhhccCcceeEeeccccc-ccCCCcccchHHHHHHHHHHhhCCcEEehhh
Confidence 7778887 999999999987642 1 22 121 12221 13333 1114458999999999999999987
Q ss_pred CC
Q 016924 82 FH 83 (380)
Q Consensus 82 ~h 83 (380)
-|
T Consensus 332 V~ 333 (757)
T KOG0470|consen 332 VH 333 (757)
T ss_pred hh
Confidence 65
No 224
>TIGR02102 pullulan_Gpos pullulanase, extracellular, Gram-positive. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. In contrast, a glycogen debranching enzyme such GlgX, homologous to this family, can release glucose at alpha,1-6 linkages from glycogen first subjected to limit degradation by phosphorylase. Characterized members of this family include a surface-located pullulanase from Streptococcus pneumoniae (PubMed:11083842) and an extracellular bifunctional amylase/pullulanase with C-terminal pullulanase activity (PubMed:8798645).
Probab=24.69 E-value=1.9e+02 Score=33.24 Aligned_cols=23 Identities=26% Similarity=0.525 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHCCCeEEEEcC
Q 016924 60 VDFYNNLINELISNGLTPFVTLF 82 (380)
Q Consensus 60 ~~~y~~~i~~l~~~gi~p~~tL~ 82 (380)
++=+++||++|.++||++|+.+.
T Consensus 554 i~EfK~LV~alH~~GI~VILDVV 576 (1111)
T TIGR02102 554 IAEFKNLINEIHKRGMGVILDVV 576 (1111)
T ss_pred HHHHHHHHHHHHHCCCEEEEecc
Confidence 46689999999999999999853
No 225
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=24.50 E-value=5.7e+02 Score=23.66 Aligned_cols=54 Identities=22% Similarity=0.261 Sum_probs=35.8
Q ss_pred CcHHHHHHHHHcCCCEEEeccccccccccCCCCCCccchHHHHHHHHHHHHHHCCCeEEE
Q 016924 20 RYKEDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFV 79 (380)
Q Consensus 20 ~~~eDi~l~~~lG~~~~R~si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~~ 79 (380)
.+++-++.++++|++.+=+++.=....+.. ..++. ...+.+-+.+.++||++..
T Consensus 22 ~~~e~~~~~~~~G~~~iEl~~~~~~~~~~~---~~~~~---~~~~~l~~~l~~~gl~i~~ 75 (283)
T PRK13209 22 CWLEKLAIAKTAGFDFVEMSVDESDERLAR---LDWSR---EQRLALVNALVETGFRVNS 75 (283)
T ss_pred CHHHHHHHHHHcCCCeEEEecCccccchhc---cCCCH---HHHHHHHHHHHHcCCceeE
Confidence 478899999999999988764311111111 11232 3467888899999999753
No 226
>PRK11572 copper homeostasis protein CutC; Provisional
Probab=24.43 E-value=1.9e+02 Score=27.18 Aligned_cols=42 Identities=21% Similarity=0.375 Sum_probs=32.2
Q ss_pred ccCcHHHHHHHHHcCCCEEEeccccccccccCCCCCCccchHHHHHHHHHHHH
Q 016924 18 YFRYKEDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINEL 70 (380)
Q Consensus 18 y~~~~eDi~l~~~lG~~~~R~si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l 70 (380)
....++||+.++++|++-+=|++- +. +|.+|.+. ..++++.+
T Consensus 72 ~~~M~~di~~~~~~GadGvV~G~L------~~--dg~vD~~~---~~~Li~~a 113 (248)
T PRK11572 72 FAAMLEDIATVRELGFPGLVTGVL------DV--DGHVDMPR---MRKIMAAA 113 (248)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeeE------CC--CCCcCHHH---HHHHHHHh
Confidence 345788999999999999999875 22 47899754 56777766
No 227
>PF09314 DUF1972: Domain of unknown function (DUF1972); InterPro: IPR015393 This domain is functionally uncharacterised and found in bacterial glycosyltransferases and rhamnosyltransferases.
Probab=24.41 E-value=1.6e+02 Score=26.37 Aligned_cols=43 Identities=16% Similarity=0.213 Sum_probs=27.2
Q ss_pred HHHCCCeEEEEcCCCCCcHhHHHhhCCCCChhhHHHHHHHHHHHHHHhCCc
Q 016924 70 LISNGLTPFVTLFHWDTPQALEDEYGGFLSPKIVKDFGDYADLCFKEFGDR 120 (380)
Q Consensus 70 l~~~gi~p~~tL~h~~~P~~l~~~~ggw~~~~~~~~f~~ya~~~~~~~~~~ 120 (380)
+++.|++.+++. |=+.|-..| |.. .+..|.++++.++-+++|.
T Consensus 114 ~~~~g~~v~vN~---DGlEWkR~K---W~~--~~k~~lk~~E~~avk~ad~ 156 (185)
T PF09314_consen 114 LRKKGGKVVVNM---DGLEWKRAK---WGR--PAKKYLKFSEKLAVKYADR 156 (185)
T ss_pred hhhcCCcEEECC---Ccchhhhhh---cCH--HHHHHHHHHHHHHHHhCCE
Confidence 333444444443 344454444 422 5789999999999999986
No 228
>PRK09389 (R)-citramalate synthase; Provisional
Probab=24.27 E-value=1.2e+02 Score=31.28 Aligned_cols=62 Identities=13% Similarity=0.053 Sum_probs=48.6
Q ss_pred cHHHHHHHHHcCCCEEEeccccccccccCCCCCCccchHHHHHHHHHHHHHHCCCeEEEEcCC
Q 016924 21 YKEDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFH 83 (380)
Q Consensus 21 ~~eDi~l~~~lG~~~~R~si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~~tL~h 83 (380)
-++|++.+.+.|++.+++.++-|.+.=... -+.--++.++-..+.+..+++.|+++.+++-.
T Consensus 75 ~~~di~~a~~~g~~~v~i~~~~Sd~h~~~~-l~~s~~e~l~~~~~~v~~ak~~g~~v~~~~ed 136 (488)
T PRK09389 75 VKVDIDAALECDVDSVHLVVPTSDLHIEYK-LKKTREEVLETAVEAVEYAKDHGLIVELSGED 136 (488)
T ss_pred CHHHHHHHHhCCcCEEEEEEccCHHHHHHH-hCCCHHHHHHHHHHHHHHHHHCCCEEEEEEee
Confidence 489999999999999999997776642211 13334567888899999999999999988765
No 229
>PF04028 DUF374: Domain of unknown function (DUF374); InterPro: IPR007172 This is a bacterial domain of unknown function.
Probab=24.25 E-value=3.1e+02 Score=20.52 Aligned_cols=40 Identities=23% Similarity=0.376 Sum_probs=31.6
Q ss_pred HHHHHcCCCEEEeccccccccccCCCCCCccchHHHHHHHHHHHHHHCCCeEEEEc
Q 016924 26 ALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTL 81 (380)
Q Consensus 26 ~l~~~lG~~~~R~si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~~tL 81 (380)
..++.+|+.++|-| .+. .+.+-+.+++..|+ .|..+.+|.
T Consensus 27 ~~~~~~G~~~iRGS-------s~r--------gg~~Alr~~~~~lk-~G~~~~itp 66 (74)
T PF04028_consen 27 RVLERFGFRTIRGS-------SSR--------GGARALREMLRALK-EGYSIAITP 66 (74)
T ss_pred HHHHHcCCCeEEeC-------CCC--------cHHHHHHHHHHHHH-CCCeEEEeC
Confidence 67899999999999 222 34566899999998 888888886
No 230
>PRK00881 purH bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; Provisional
Probab=24.09 E-value=1.4e+02 Score=31.10 Aligned_cols=52 Identities=19% Similarity=0.474 Sum_probs=43.0
Q ss_pred CcccCCcccCcHHHHHHHHHcCCCEEEeccccccccccCCCCCCccchHHHHHHHHHHHHHHCCCeEEEE
Q 016924 11 GDVADNFYFRYKEDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVT 80 (380)
Q Consensus 11 ~~~a~~~y~~~~eDi~l~~~lG~~~~R~si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~~t 80 (380)
.-+|+|.+..+.+-|+.|++.|++++ ++|.| .++. +++|+.+.++||..+.|
T Consensus 455 av~aSDafFPf~Dtie~aa~~Gv~aI--------iqPgG----SirD------~evI~aAne~gIamvfT 506 (513)
T PRK00881 455 AVLASDAFFPFRDGVEAAAKAGITAI--------IQPGG----SIRD------EEVIAAADEHGIAMVFT 506 (513)
T ss_pred eEEEeeCCCCchhHHHHHHHcCCeEE--------EeCCC----CCCh------HHHHHHHHHcCCEEEEC
Confidence 34678888889999999999999875 66764 4654 68999999999999887
No 231
>cd01335 Radical_SAM Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster. Mechanistically, they share the transfer of a single electron from the iron-sulfur cluster to SAM, which leads to its reductive cleavage to methionine and a 5'-deoxyadenosyl radical, which, in turn, abstracts a hydrogen from the appropriately positioned carbon atom. Depending on the enzyme, SAM is consumed during this process or it is restored and reused. Radical SAM enzymes catalyze steps in metabolism, DNA repair, the biosynthesis of vitamins and coenzymes, and the biosynthesis of many antibiotics. Examples are biotin synthase (BioB), lipoyl synthase (LipA), pyruvate formate-lyase (PFL), coproporphyrinogen oxidase (HemN), lysine 2,3-aminomutase (LAM), anaerobic ribonucleotide reductase (ARR), and MoaA, an enzyme o
Probab=23.54 E-value=1.2e+02 Score=25.69 Aligned_cols=58 Identities=19% Similarity=0.154 Sum_probs=39.0
Q ss_pred cHHHHHHHHHcCCCEEEecccccccc-ccCCCCCCccchHHHHHHHHHHHHHHCCCeEEEEc
Q 016924 21 YKEDIALVKQVGFDSIRFSISWSRIL-PHGNISGGVNQQGVDFYNNLINELISNGLTPFVTL 81 (380)
Q Consensus 21 ~~eDi~l~~~lG~~~~R~si~W~ri~-p~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~~tL 81 (380)
-+++++.|+++|+..+.+|++-..-. -.. -. -....++.+-+.|+.+.+.|+.+.+++
T Consensus 87 ~~~~~~~l~~~g~~~i~i~le~~~~~~~~~--~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~ 145 (204)
T cd01335 87 TEELLKELKELGLDGVGVSLDSGDEEVADK--IR-GSGESFKERLEALKELREAGLGLSTTL 145 (204)
T ss_pred CHHHHHHHHhCCCceEEEEcccCCHHHHHH--Hh-cCCcCHHHHHHHHHHHHHcCCCceEEE
Confidence 48899999999999999999632221 110 00 011234667788888888888877765
No 232
>PRK09057 coproporphyrinogen III oxidase; Provisional
Probab=23.30 E-value=4.7e+02 Score=25.91 Aligned_cols=95 Identities=11% Similarity=0.035 Sum_probs=57.2
Q ss_pred cHHHHHHHHHcCCCEEEeccc-c-ccccccCCCCCCccchHHHHHHHHHHHHHHCCCeEEEEcCCCCCcHhHHHhhCCCC
Q 016924 21 YKEDIALVKQVGFDSIRFSIS-W-SRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFHWDTPQALEDEYGGFL 98 (380)
Q Consensus 21 ~~eDi~l~~~lG~~~~R~si~-W-~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~~tL~h~~~P~~l~~~~ggw~ 98 (380)
-.+.++.|+++|+|.+.+++. - .++...- |+.. ..+-..+.++.+++.++.+.+.|- +++|.
T Consensus 103 ~~e~L~~l~~~GvnrislGvQS~~d~vL~~l---~R~~--~~~~~~~ai~~~~~~~~~v~~dli-~GlPg---------- 166 (380)
T PRK09057 103 EAGRFRGYRAAGVNRVSLGVQALNDADLRFL---GRLH--SVAEALAAIDLAREIFPRVSFDLI-YARPG---------- 166 (380)
T ss_pred CHHHHHHHHHcCCCEEEEecccCCHHHHHHc---CCCC--CHHHHHHHHHHHHHhCccEEEEee-cCCCC----------
Confidence 458999999999998888773 2 2222221 2221 123346678888888988888875 45552
Q ss_pred ChhhHHHHHHHHHHHHHHhCCcCcEEEecCCCccc
Q 016924 99 SPKIVKDFGDYADLCFKEFGDRVKHWITLNEPETV 133 (380)
Q Consensus 99 ~~~~~~~f~~ya~~~~~~~~~~v~~w~t~NEp~~~ 133 (380)
++.+.|.+=.+.+.+.=-++|..+...=+|...
T Consensus 167 --qt~~~~~~~l~~~~~l~p~~is~y~L~~~~gT~ 199 (380)
T PRK09057 167 --QTLAAWRAELKEALSLAADHLSLYQLTIEEGTA 199 (380)
T ss_pred --CCHHHHHHHHHHHHhcCCCeEEeecceecCCCh
Confidence 123334443444443324567777777777654
No 233
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=23.12 E-value=3.2e+02 Score=28.47 Aligned_cols=24 Identities=13% Similarity=0.072 Sum_probs=19.3
Q ss_pred HHHHHHHHHcCCCEEEeccccccc
Q 016924 22 KEDIALVKQVGFDSIRFSISWSRI 45 (380)
Q Consensus 22 ~eDi~l~~~lG~~~~R~si~W~ri 45 (380)
+.|++..++.|++.+|++...+.+
T Consensus 100 ~~fv~~a~~~Gidi~RIfd~lndv 123 (499)
T PRK12330 100 DRFVEKSAENGMDVFRVFDALNDP 123 (499)
T ss_pred HHHHHHHHHcCCCEEEEEecCChH
Confidence 347899999999999999765444
No 234
>cd06563 GH20_chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This GH20 domain family includes an N-acetylglucosamidase (GlcNAcase A) from Pseudoalteromonas piscicida and an N-acetylhexosaminidase (SpHex) from Streptomyces plicatus. SpHex lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=22.90 E-value=2.4e+02 Score=27.80 Aligned_cols=74 Identities=19% Similarity=0.290 Sum_probs=46.9
Q ss_pred CcccCCcccC--cHHHHHHHHHcCCCEEEeccc----ccc---ccccCCC----------------------CCCccchH
Q 016924 11 GDVADNFYFR--YKEDIALVKQVGFDSIRFSIS----WSR---ILPHGNI----------------------SGGVNQQG 59 (380)
Q Consensus 11 ~~~a~~~y~~--~~eDi~l~~~lG~~~~R~si~----W~r---i~p~~~~----------------------~g~~n~~~ 59 (380)
-|+|-.++.. .++-|+.|+..++|.+.+-++ |.- -.|.-+. .|.+-.
T Consensus 8 LD~aR~f~~~~~ik~~Id~ma~~K~N~lhlHltDdq~~rle~~~~P~Lt~~ga~~~~~~~~~~~~~~~~~~~~~~YT~-- 85 (357)
T cd06563 8 LDVSRHFFPVDEVKRFIDLMALYKLNVFHWHLTDDQGWRIEIKKYPKLTEVGAWRGPTEIGLPQGGGDGTPYGGFYTQ-- 85 (357)
T ss_pred eeccccCcCHHHHHHHHHHHHHhccceEEEeeecCCCceecccCcchhhhcccccCcccccccccccCCCccCceECH--
Confidence 3555554432 455689999999998877652 311 1121100 022333
Q ss_pred HHHHHHHHHHHHHCCCeEEEEcCCCCCcHhH
Q 016924 60 VDFYNNLINELISNGLTPFVTLFHWDTPQAL 90 (380)
Q Consensus 60 ~~~y~~~i~~l~~~gi~p~~tL~h~~~P~~l 90 (380)
+=++++++.++++||++|.-+ |+|...
T Consensus 86 -~di~eiv~yA~~rgI~VIPEI---D~PGH~ 112 (357)
T cd06563 86 -EEIREIVAYAAERGITVIPEI---DMPGHA 112 (357)
T ss_pred -HHHHHHHHHHHHcCCEEEEec---CCchhH
Confidence 557999999999999999876 777643
No 235
>PRK14565 triosephosphate isomerase; Provisional
Probab=22.87 E-value=2.7e+02 Score=25.87 Aligned_cols=49 Identities=16% Similarity=0.197 Sum_probs=32.4
Q ss_pred HHHHHHcCCCEEEeccccccccccCCCCCCccchHHHHHHHHHHHHHHCCCeEEEEcC
Q 016924 25 IALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLF 82 (380)
Q Consensus 25 i~l~~~lG~~~~R~si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~~tL~ 82 (380)
..++|++|++..=++=|=.|. .+++.. +...+=+..++++||+|++++-
T Consensus 78 ~~mLkd~G~~~viiGHSERR~--------~f~Etd-~~V~~Kv~~al~~gl~pIvCiG 126 (237)
T PRK14565 78 AKMLKECGCSYVILGHSERRS--------TFHETD-SDIRLKAESAIESGLIPIICVG 126 (237)
T ss_pred HHHHHHcCCCEEEECcccccC--------cCCcCH-HHHHHHHHHHHHCCCEEEEEcC
Confidence 478889998888777662222 222210 2234445899999999999983
No 236
>COG5309 Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism]
Probab=22.86 E-value=2.8e+02 Score=26.44 Aligned_cols=53 Identities=19% Similarity=0.258 Sum_probs=39.3
Q ss_pred cccCCcccCcHHHHHHHHHcCCCEEEeccccccccccCCCCCCccchHHHHHHHHHHHHHHCCCeEEEEcC
Q 016924 12 DVADNFYFRYKEDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLF 82 (380)
Q Consensus 12 ~~a~~~y~~~~eDi~l~~~lG~~~~R~si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~~tL~ 82 (380)
|-+|-.=..|..|+++++..+. .+|.= | -|. .-..++...+.+.|+++++.++
T Consensus 56 dGtCKSa~~~~sDLe~l~~~t~-~IR~Y-------------~-sDC---n~le~v~pAa~~~g~kv~lGiw 108 (305)
T COG5309 56 DGTCKSADQVASDLELLASYTH-SIRTY-------------G-SDC---NTLENVLPAAEASGFKVFLGIW 108 (305)
T ss_pred CCCCcCHHHHHhHHHHhccCCc-eEEEe-------------e-ccc---hhhhhhHHHHHhcCceEEEEEe
Confidence 4468888889999999998886 44431 1 222 2257889999999999999984
No 237
>cd01990 Alpha_ANH_like_I This is a subfamily of Adenine nucleotide alpha hydrolases superfamily. Adenine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins probably binds ATP. This domain is about 200 amino acids long with a strongly conserved motif SGGKD at the N terminus.
Probab=22.81 E-value=3.7e+02 Score=23.65 Aligned_cols=69 Identities=12% Similarity=0.047 Sum_probs=43.0
Q ss_pred CCcccCcHHHH----HHHHHcCCCEEEeccc---cccccccCCCCCCccchHHHHHHHHHHHHHHCCCeEEEEcCCCC
Q 016924 15 DNFYFRYKEDI----ALVKQVGFDSIRFSIS---WSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFHWD 85 (380)
Q Consensus 15 ~~~y~~~~eDi----~l~~~lG~~~~R~si~---W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~~tL~h~~ 85 (380)
.|+-.+..+++ ++.+++|++.+.+.++ ++.+.-.. ........-..|..+.+.+.+.|+..++|=+|.|
T Consensus 31 vd~g~~~~~~~~~~~~~a~~lgi~~~~~~~~~~~~~~~~~~~--~~~~~~~r~~~~~~l~~~a~~~g~~~I~~G~~~d 106 (202)
T cd01990 31 ATSPLFPRRELEEAKRLAKEIGIRHEVIETDELDDPEFAKNP--PDRCYLCKKALYEALKEIAEELGLDVVLDGTNAD 106 (202)
T ss_pred eCCCCCCHHHHHHHHHHHHHcCCcEEEEeCCccccHHHhcCC--CCccchhHHHHHHHHHHHHHHCCCCEEEEcCccc
Confidence 44433334554 3347899999988886 33222111 1122233345688888899999999999988764
No 238
>PF09713 A_thal_3526: Plant protein 1589 of unknown function (A_thal_3526); InterPro: IPR006476 This plant-specific family of proteins are defined by an uncharacterised region 57 residues in length. It is found toward the N terminus of most proteins that contain it. Examples include at least several proteins from Arabidopsis thaliana (Mouse-ear cress) and Oryza sativa (Rice). The function of the proteins are unknown.
Probab=22.66 E-value=72 Score=22.51 Aligned_cols=36 Identities=14% Similarity=0.089 Sum_probs=23.8
Q ss_pred HHHHHHHH-HCCCeEEEEcCCCCCcHhHHHhhCCCCChhhHHHHHHHH
Q 016924 64 NNLINELI-SNGLTPFVTLFHWDTPQALEDEYGGFLSPKIVKDFGDYA 110 (380)
Q Consensus 64 ~~~i~~l~-~~gi~p~~tL~h~~~P~~l~~~~ggw~~~~~~~~f~~ya 110 (380)
+++++.|. ..+|+|.+|.. .|-.- -+++.+-|..|-
T Consensus 16 ~E~v~~L~~~a~I~P~~T~~-----VW~~L------e~eN~eFF~aY~ 52 (54)
T PF09713_consen 16 EECVRALQKQANIEPVFTST-----VWQKL------EKENPEFFKAYY 52 (54)
T ss_pred HHHHHHHHHHcCCChHHHHH-----HHHHH------HHHCHHHHHHhh
Confidence 67888885 56999998874 45322 244556677763
No 239
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=22.50 E-value=6.2e+02 Score=23.42 Aligned_cols=54 Identities=20% Similarity=0.209 Sum_probs=38.2
Q ss_pred cCcHHHHHHHHHcCCCEEEeccccccccccCCCCCCccchHHHHHHHHHHHHHHCCCeEE
Q 016924 19 FRYKEDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPF 78 (380)
Q Consensus 19 ~~~~eDi~l~~~lG~~~~R~si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~ 78 (380)
..+.+-+++++++|++.+=+++.-....+.. -.++. .....+-+.+.++||++.
T Consensus 16 ~~~~e~l~~~~~~G~~~VEl~~~~~~~~~~~---~~~~~---~~~~~~~~~l~~~gl~i~ 69 (279)
T TIGR00542 16 ECWLERLQLAKTCGFDFVEMSVDETDDRLSR---LDWSR---EQRLALVNAIIETGVRIP 69 (279)
T ss_pred CCHHHHHHHHHHcCCCEEEEecCCccchhhc---cCCCH---HHHHHHHHHHHHcCCCce
Confidence 3588999999999999999876543222221 11222 456788899999999975
No 240
>PRK10658 putative alpha-glucosidase; Provisional
Probab=22.50 E-value=6.5e+02 Score=27.23 Aligned_cols=102 Identities=17% Similarity=0.209 Sum_probs=61.6
Q ss_pred HHHHHHcCCC--EEEeccccccccccCCCCCCccchHHHHHHHHHHHHHHCCCeEEEEcCCC---CCcHhHHHh---h--
Q 016924 25 IALVKQVGFD--SIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFHW---DTPQALEDE---Y-- 94 (380)
Q Consensus 25 i~l~~~lG~~--~~R~si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~~tL~h~---~~P~~l~~~---~-- 94 (380)
++.+++.|+. ++=+.+-|.+-.--. +-++|.+.+---..||+.|++.|+++++.+.-+ +.|.+-+.. |
T Consensus 289 ~~~~r~~~iP~d~i~lD~~w~~~~~~~--~f~wd~~~FPdp~~mi~~L~~~G~k~~~~i~P~i~~~s~~f~e~~~~gy~v 366 (665)
T PRK10658 289 IDGMAERDLPLHVFHFDCFWMKEFQWC--DFEWDPRTFPDPEGMLKRLKAKGLKICVWINPYIAQKSPLFKEGKEKGYLL 366 (665)
T ss_pred HHHHHHcCCCceEEEEchhhhcCCcee--eeEEChhhCCCHHHHHHHHHHCCCEEEEeccCCcCCCchHHHHHHHCCeEE
Confidence 4667776664 666777775432111 123444333334789999999999999876532 222221110 0
Q ss_pred --------------C-----CCCChhhHHHHHHHHHHHHHHhCCcC-cEEEecCCCc
Q 016924 95 --------------G-----GFLSPKIVKDFGDYADLCFKEFGDRV-KHWITLNEPE 131 (380)
Q Consensus 95 --------------g-----gw~~~~~~~~f~~ya~~~~~~~~~~v-~~w~t~NEp~ 131 (380)
| -+.||+..++|.+..+.+.+ .| | -+|.=+||+.
T Consensus 367 k~~~G~~~~~~~W~g~~~~~Dftnp~ar~W~~~~~~~l~d-~G--vdgfw~D~gE~~ 420 (665)
T PRK10658 367 KRPDGSVWQWDKWQPGMAIVDFTNPDACKWYADKLKGLLD-MG--VDCFKTDFGERI 420 (665)
T ss_pred ECCCCCEeeeeecCCCceeecCCCHHHHHHHHHHHHHHHh-cC--CcEEEecCCcee
Confidence 1 15689999999888887554 44 4 4667789863
No 241
>PF10107 Endonuc_Holl: Endonuclease related to archaeal Holliday junction resolvase; InterPro: IPR019287 This domain is found in various predicted bacterial endonucleases which are distantly related to archaeal Holliday junction resolvases.
Probab=22.22 E-value=65 Score=27.84 Aligned_cols=41 Identities=17% Similarity=0.402 Sum_probs=30.9
Q ss_pred hccccCCCChhHHHHhcccCC--CCChhHHhHhcCCcceEEeecccc
Q 016924 229 NPITYGSYPRSMQHLVGNRLP--KFTKSQAEMVKGSVDFLGLNYYTA 273 (380)
Q Consensus 229 dpi~~G~YP~~~~~~l~~~lp--~~t~~d~~~ik~~~DFiGiNyY~~ 273 (380)
-.++.|+..+-+..+ +| .+.|.|...|..+.|||.++=++.
T Consensus 71 ravl~Gkv~EqlaP~----lp~F~ynP~D~RFlG~PVD~IvF~Gls~ 113 (156)
T PF10107_consen 71 RAVLKGKVSEQLAPF----LPEFPYNPKDARFLGSPVDFIVFDGLSD 113 (156)
T ss_pred HHHHcchhHHHhhhc----cCCCCCChhhheecCCCceEEEEcCCCC
Confidence 345677765555544 45 458999999999999999999986
No 242
>PF01624 MutS_I: MutS domain I C-terminus.; InterPro: IPR007695 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the N-terminal domain of proteins in the MutS family of DNA mismatch repair proteins, as well as closely related proteins. The N-terminal domain of MutS is responsible for mismatch recognition and forms a 6-stranded mixed beta-sheet surrounded by three alpha-helices, which is similar to the structure of tRNA endonuclease. Yeast MSH3 [], bacterial proteins involved in DNA mismatch repair, and the predicted protein product of the Rep-3 gene of mouse share extensive sequence similarity. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein.; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 1FW6_A 1EWQ_A 1EWR_B 1NNE_B 3THY_B 3THZ_B 3THW_B 3THX_B 2WTU_A 1OH7_A ....
Probab=22.21 E-value=85 Score=25.23 Aligned_cols=59 Identities=19% Similarity=0.371 Sum_probs=39.9
Q ss_pred CCcccCcHHHHHHHH-HcCCCEEEeccccccccccCCCCCCccchHHHHHHHHHHHHHHCCCeEEEE
Q 016924 15 DNFYFRYKEDIALVK-QVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVT 80 (380)
Q Consensus 15 ~~~y~~~~eDi~l~~-~lG~~~~R~si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~~t 80 (380)
-++|+-|.+|...++ .+|++.-.-......-.|.- | +.. .-++..+..|.++|.++.|.
T Consensus 24 G~fYe~y~~DA~~~a~~l~~~~~~~~~~~~~~~~~~---g-fp~---~~l~~~l~~Ll~~G~~V~i~ 83 (113)
T PF01624_consen 24 GDFYEAYGEDAEFVAEILGLKLSKRKTGGGKSVPMA---G-FPK---SQLDKYLKKLLEAGYRVAIY 83 (113)
T ss_dssp TTEEEEECHHHHHHHHHHTSSSEEEECSSSECEEEE---E-EEG---GGHHHHHHHHHHTT-EEEEE
T ss_pred CCEEEEEccCHHHHHHhccceeeeccccccccccEe---c-ccH---HHHHHHHHHHHHcCCEEEEE
Confidence 369999999987665 58988776654333223332 2 332 33788899999999999886
No 243
>PRK15108 biotin synthase; Provisional
Probab=22.10 E-value=2.5e+02 Score=27.49 Aligned_cols=47 Identities=19% Similarity=0.413 Sum_probs=34.1
Q ss_pred HHHHHcCCCEEEeccccccccccCCCCCCccchHHHHHHHHHHHHHHCCCeEEEEcC
Q 016924 26 ALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLF 82 (380)
Q Consensus 26 ~l~~~lG~~~~R~si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~~tL~ 82 (380)
+.++++|++.+=++.+|. .|. ...++++.+++..+++.|+++++++-
T Consensus 86 ~~~~~~G~~~i~i~~~g~--~p~--------~~~~e~i~~~i~~ik~~~i~v~~s~G 132 (345)
T PRK15108 86 RKAKAAGSTRFCMGAAWK--NPH--------ERDMPYLEQMVQGVKAMGLETCMTLG 132 (345)
T ss_pred HHHHHcCCCEEEEEecCC--CCC--------cchHHHHHHHHHHHHhCCCEEEEeCC
Confidence 455679999876666662 232 13468999999999999998877753
No 244
>PLN02925 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
Probab=22.04 E-value=2.7e+02 Score=30.16 Aligned_cols=52 Identities=15% Similarity=0.248 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHCCCeEEEEcCCCCCcHhHHHhhCCCCChhhHHHHHHHHHHHH
Q 016924 62 FYNNLINELISNGLTPFVTLFHWDTPQALEDEYGGFLSPKIVKDFGDYADLCF 114 (380)
Q Consensus 62 ~y~~~i~~l~~~gi~p~~tL~h~~~P~~l~~~~ggw~~~~~~~~f~~ya~~~~ 114 (380)
.+..+++.++++|+..=+...|=.++.-+..+||. .....++.-.+|++.|-
T Consensus 211 ~f~~~v~~ak~~~~~iRIGvN~GSLs~ri~~~yGd-tp~gmVeSAle~~~i~e 262 (733)
T PLN02925 211 VFTPLVEKCKKYGRAMRIGTNHGSLSDRIMSYYGD-SPRGMVESAFEFARICR 262 (733)
T ss_pred HHHHHHHHHHHCCCCEEEecCCcCchHHHHHHhCC-ChHHHHHHHHHHHHHHH
Confidence 34459999999999999999999999999988875 44446666666666554
No 245
>cd06564 GH20_DspB_LnbB-like Glycosyl hydrolase family 20 (GH20) catalytic domain of dispersin B (DspB), lacto-N-biosidase (LnbB) and related proteins. Dispersin B is a soluble beta-N-acetylglucosamidase found in bacteria that hydrolyzes the beta-1,6-linkages of PGA (poly-beta-(1,6)-N-acetylglucosamine), a major component of the extracellular polysaccharide matrix. Lacto-N-biosidase hydrolyzes lacto-N-biose (LNB) type I oligosaccharides at the nonreducing terminus to produce lacto-N-biose as part of the GNB/LNB (galacto-N-biose/lacto-N-biose I) degradation pathway. The lacto-N-biosidase from Bifidobacterium bifidum has this GH20 domain, a carbohydrate binding module 32, and a bacterial immunoglobulin-like domain 2, as well as a YSIRK signal peptide and a G5 membrane anchor at the N and C termini, respectively. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=22.01 E-value=3e+02 Score=26.58 Aligned_cols=73 Identities=15% Similarity=0.231 Sum_probs=45.7
Q ss_pred cccCCcccC--cHHHHHHHHHcCCCEEEecc--cccc---ccccCC---------------------CCCCccchHHHHH
Q 016924 12 DVADNFYFR--YKEDIALVKQVGFDSIRFSI--SWSR---ILPHGN---------------------ISGGVNQQGVDFY 63 (380)
Q Consensus 12 ~~a~~~y~~--~~eDi~l~~~lG~~~~R~si--~W~r---i~p~~~---------------------~~g~~n~~~~~~y 63 (380)
|+|-.++.. .++=|+.|+..++|.+-+=+ +|.= ..|... ..+.+-+ +-+
T Consensus 8 D~aR~~~~~~~ik~~id~ma~~K~N~lhlHltD~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~YT~---~di 84 (326)
T cd06564 8 DVGRKYYSMDFLKDIIKTMSWYKMNDLQLHLNDNLIFNLDDMSTTVNNATYASDDVKSGNNYYNLTANDGYYTK---EEF 84 (326)
T ss_pred EccCCCCCHHHHHHHHHHHHHcCCceEEEeecCCcccccCCCchhhhhhhhhccccccccccCCCCCCCCcccH---HHH
Confidence 444444421 45558999999999887643 2211 112110 0134444 457
Q ss_pred HHHHHHHHHCCCeEEEEcCCCCCcHhH
Q 016924 64 NNLINELISNGLTPFVTLFHWDTPQAL 90 (380)
Q Consensus 64 ~~~i~~l~~~gi~p~~tL~h~~~P~~l 90 (380)
+++++.++++||++|.-+ |+|-..
T Consensus 85 ~eiv~yA~~rgI~vIPEI---D~PGH~ 108 (326)
T cd06564 85 KELIAYAKDRGVNIIPEI---DSPGHS 108 (326)
T ss_pred HHHHHHHHHcCCeEeccC---CCcHHH
Confidence 999999999999999765 888754
No 246
>PRK01060 endonuclease IV; Provisional
Probab=21.93 E-value=3.4e+02 Score=25.19 Aligned_cols=51 Identities=8% Similarity=0.094 Sum_probs=36.8
Q ss_pred CcHHHHHHHHHcCCCEEEeccccccccccCCCCCCccchHHHHHHHHHHHHHHCCCeE
Q 016924 20 RYKEDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTP 77 (380)
Q Consensus 20 ~~~eDi~l~~~lG~~~~R~si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p 77 (380)
-+++-++.++++|++.+=+.+.-++.... +..+. +..+++-+.+.++||++
T Consensus 13 ~~~~~l~~~~~~G~d~vEl~~~~p~~~~~----~~~~~---~~~~~lk~~~~~~gl~~ 63 (281)
T PRK01060 13 GLEGAVAEAAEIGANAFMIFTGNPQQWKR----KPLEE---LNIEAFKAACEKYGISP 63 (281)
T ss_pred CHHHHHHHHHHcCCCEEEEECCCCCCCcC----CCCCH---HHHHHHHHHHHHcCCCC
Confidence 37888999999999999998765554332 23444 33566667788999984
No 247
>cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=21.81 E-value=7.8e+02 Score=24.32 Aligned_cols=125 Identities=16% Similarity=0.094 Sum_probs=73.3
Q ss_pred CCccchHHHHHHHHHHHHHHCCCeEEEEcCCCCC---cH--hHHH-h--------hCCCC-----C----hhhHHHHHHH
Q 016924 53 GGVNQQGVDFYNNLINELISNGLTPFVTLFHWDT---PQ--ALED-E--------YGGFL-----S----PKIVKDFGDY 109 (380)
Q Consensus 53 g~~n~~~~~~y~~~i~~l~~~gi~p~~tL~h~~~---P~--~l~~-~--------~ggw~-----~----~~~~~~f~~y 109 (380)
+-++.+-+..++++++.++++|=+.++=|.|-.- +. +... . ..++. + .++++.|++=
T Consensus 70 ~~~~d~~i~~~~~l~d~vh~~Ga~i~~QL~H~Gr~~~~~~~~~~~~~~~~ps~~~~~~~~~p~~mt~~eI~~ii~~f~~A 149 (361)
T cd04747 70 RFHGEDALAGWKKVVDEVHAAGGKIAPQLWHVGAMRKLGTPPFPDVPPLSPSGLVGPGKPVGREMTEADIDDVIAAFARA 149 (361)
T ss_pred ccCCHHHHHHHHHHHHHHHhcCCEEEEeccCCCCCcCcccCccCCCceeCCCCCCcCCCCCCccCCHHHHHHHHHHHHHH
Confidence 4567788999999999999999999999999432 10 0000 0 00110 1 3477888887
Q ss_pred HHHHHHHhCCcCcEEEecCCCccccccccccCccC-CCC--CCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHh
Q 016924 110 ADLCFKEFGDRVKHWITLNEPETVGECGYAKGTKA-PGR--CSNYIGNCPAGNSATEPYVAAHHLILSHATAVKLYRQNY 186 (380)
Q Consensus 110 a~~~~~~~~~~v~~w~t~NEp~~~~~~gy~~g~~~-Pg~--~~~~~~~~~~~~~~~~~~~~~h~~l~Aha~a~~~~~~~~ 186 (380)
|+.+.+.=-|-|. +.+-.||+...|= |.. +.+-+ |. ..-|-..--...++.+|+..
T Consensus 150 A~~a~~aGfDgVe---------ih~ahGyLl~qFLSp~~N~RtDeY-----GG-------slenR~Rf~~eii~air~~v 208 (361)
T cd04747 150 AADARRLGFDGIE---------LHGAHGYLIDQFFWAGTNRRADGY-----GG-------SLAARSRFAAEVVKAIRAAV 208 (361)
T ss_pred HHHHHHcCCCEEE---------EecccchHHHHhcCCCCCCCCCCC-----CC-------CHHHHHHHHHHHHHHHHHHc
Confidence 7666554223333 4566788877653 332 11100 11 12233444446677777764
Q ss_pred hcCCCccEEEEecC
Q 016924 187 QASQNGLIGITVSS 200 (380)
Q Consensus 187 ~~~~~~~iG~~~~~ 200 (380)
.++-.||+-++.
T Consensus 209 --G~d~~v~vRis~ 220 (361)
T cd04747 209 --GPDFPIILRFSQ 220 (361)
T ss_pred --CCCCeEEEEECc
Confidence 356689998874
No 248
>smart00052 EAL Putative diguanylate phosphodiesterase. Putative diguanylate phosphodiesterase, present in a variety of bacteria.
Probab=21.81 E-value=2.3e+02 Score=25.18 Aligned_cols=62 Identities=15% Similarity=0.160 Sum_probs=45.0
Q ss_pred cccCCcccCcHHHHHHHHHcCCCEEEeccccccccccCCCCCCccchHHHHHHHHHHHHHHCCCeEEEE
Q 016924 12 DVADNFYFRYKEDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVT 80 (380)
Q Consensus 12 ~~a~~~y~~~~eDi~l~~~lG~~~~R~si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~~t 80 (380)
.+|.|.+-.-...+..+..+.++.++++.++-+-.... .......+.++..+++.|++++++
T Consensus 148 ~ialddfg~~~~~~~~l~~l~~d~iKld~~~~~~~~~~-------~~~~~~l~~l~~~~~~~~~~via~ 209 (241)
T smart00052 148 RIALDDFGTGYSSLSYLKRLPVDLLKIDKSFVRDLQTD-------PEDEAIVQSIIELAQKLGLQVVAE 209 (241)
T ss_pred EEEEeCCCCcHHHHHHHHhCCCCeEEECHHHHhhhccC-------hhHHHHHHHHHHHHHHCCCeEEEe
Confidence 45666666656778888888888888887765443321 223466889999999999999976
No 249
>cd06413 GH25_muramidase_1 Uncharacterized bacterial muramidase containing a glycosyl hydrolase family 25 (GH25) catalytic domain. Endo-N-acetylmuramidases are lysozymes (also referred to as peptidoglycan hydrolases) that degrade bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues.
Probab=21.79 E-value=3.5e+02 Score=23.76 Aligned_cols=49 Identities=18% Similarity=0.217 Sum_probs=34.0
Q ss_pred HHHHHHHHcCCCEEEeccccccccccCCCCCCccchHHHHHHHHHHHHHHCCCeEEEEcCCCC
Q 016924 23 EDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFHWD 85 (380)
Q Consensus 23 eDi~l~~~lG~~~~R~si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~~tL~h~~ 85 (380)
-|.+.+|+.|++.+=+=+. +| .+..| ..+..-+..++++||. +..|||-
T Consensus 15 id~~~vk~~gi~fviiKat------eG--~~~~D----~~~~~~~~~a~~~Gl~--vG~Yhy~ 63 (191)
T cd06413 15 IDWARVRAQGVSFAYIKAT------EG--GDHVD----KRFAENWRGARAAGLP--RGAYHFF 63 (191)
T ss_pred cCHHHHHhCCCcEEEEEEc------CC--CCccC----HHHHHHHHHHHHcCCc--eEEEEEE
Confidence 4788888888874433221 34 24567 4688889999999993 3888874
No 250
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=21.14 E-value=1.5e+02 Score=27.73 Aligned_cols=55 Identities=13% Similarity=0.127 Sum_probs=36.3
Q ss_pred CcHHHHHHHHHcCCCEEEeccccccccccCCCCCCccchH----HHHHHHHHHHHHHCCCeEEEEc
Q 016924 20 RYKEDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQG----VDFYNNLINELISNGLTPFVTL 81 (380)
Q Consensus 20 ~~~eDi~l~~~lG~~~~R~si~W~ri~p~~~~~g~~n~~~----~~~y~~~i~~l~~~gi~p~~tL 81 (380)
+.+.-++++++||++.+++.- .-.+. +.-+.+. ++..+.+.+.+.++||+..+=.
T Consensus 100 ~~~~~i~~a~~lG~~~i~~~~---~~~~~----~~~~~~~~~~~~~~l~~l~~~A~~~GV~i~iE~ 158 (283)
T PRK13209 100 IMRKAIQLAQDLGIRVIQLAG---YDVYY----EQANNETRRRFIDGLKESVELASRASVTLAFEI 158 (283)
T ss_pred HHHHHHHHHHHcCCCEEEECC---ccccc----cccHHHHHHHHHHHHHHHHHHHHHhCCEEEEee
Confidence 456678999999999999742 11111 1112233 4566888888899999777654
No 251
>TIGR00423 radical SAM domain protein, CofH subfamily. This protein family includes the CofH protein of coenzyme F(420) biosynthesis from Methanocaldococcus jannaschii, but appears to hit genomes more broadly than just the subset that make coenzyme F(420), so that narrower group is being built as a separate family.
Probab=21.09 E-value=1.4e+02 Score=28.67 Aligned_cols=53 Identities=21% Similarity=0.328 Sum_probs=36.8
Q ss_pred cHHHHHHHHHcCCCEEE-eccc-c-----ccccccCCCCCCccchHHHHHHHHHHHHHHCCCeEEEEc
Q 016924 21 YKEDIALVKQVGFDSIR-FSIS-W-----SRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTL 81 (380)
Q Consensus 21 ~~eDi~l~~~lG~~~~R-~si~-W-----~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~~tL 81 (380)
.+|.++.||++|++.+- .+++ - .++.|.. .. .+.+-+.+..+++.||++..++
T Consensus 106 ~~e~l~~LkeAGl~~i~~~g~E~l~~~~~~~i~~~~-----~t---~~~~l~~i~~a~~~Gi~~~s~~ 165 (309)
T TIGR00423 106 IEEVLKRLKKAGLDSMPGTGAEILDDSVRRKICPNK-----LS---SDEWLEVIKTAHRLGIPTTATM 165 (309)
T ss_pred HHHHHHHHHHcCCCcCCCCcchhcCHHHHHhhCCCC-----CC---HHHHHHHHHHHHHcCCCceeeE
Confidence 47789999999999884 2321 1 1222332 22 3556799999999999999776
No 252
>PRK08207 coproporphyrinogen III oxidase; Provisional
Probab=21.05 E-value=3.2e+02 Score=28.28 Aligned_cols=88 Identities=14% Similarity=0.088 Sum_probs=50.6
Q ss_pred cHHHHHHHHHcCCCEEEeccc-cc-cccccCCCCCCccchHHHHHHHHHHHHHHCCC-eEEEEcCCCCCcHhHHHhhCCC
Q 016924 21 YKEDIALVKQVGFDSIRFSIS-WS-RILPHGNISGGVNQQGVDFYNNLINELISNGL-TPFVTLFHWDTPQALEDEYGGF 97 (380)
Q Consensus 21 ~~eDi~l~~~lG~~~~R~si~-W~-ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~gi-~p~~tL~h~~~P~~l~~~~ggw 97 (380)
-+|-++.|+++|++.+-+++. -+ ++...- |.. -..+-..+.++.+++.|+ .+-++|- +++|.
T Consensus 268 t~e~L~~Lk~~Gv~RISIGvQS~~d~vLk~i---gR~--ht~e~v~~ai~~ar~~Gf~~In~DLI-~GLPg--------- 332 (488)
T PRK08207 268 TEEKLEVLKKYGVDRISINPQTMNDETLKAI---GRH--HTVEDIIEKFHLAREMGFDNINMDLI-IGLPG--------- 332 (488)
T ss_pred CHHHHHHHHhcCCCeEEEcCCcCCHHHHHHh---CCC--CCHHHHHHHHHHHHhCCCCeEEEEEE-eCCCC---------
Confidence 367799999999995555542 22 222111 221 123557788999999999 4555653 45562
Q ss_pred CChhhHHHHHHHHHHHHHHhCCcCcEEEe
Q 016924 98 LSPKIVKDFGDYADLCFKEFGDRVKHWIT 126 (380)
Q Consensus 98 ~~~~~~~~f~~ya~~~~~~~~~~v~~w~t 126 (380)
++.+.|.+=.+.+.+.=-+.+.....
T Consensus 333 ---Et~ed~~~tl~~l~~L~pd~isv~~L 358 (488)
T PRK08207 333 ---EGLEEVKHTLEEIEKLNPESLTVHTL 358 (488)
T ss_pred ---CCHHHHHHHHHHHHhcCcCEEEEEec
Confidence 23455666555554433344554443
No 253
>cd02877 GH18_hevamine_XipI_class_III This conserved domain family includes xylanase inhibitor Xip-I, and the class III plant chitinases such as hevamine, concanavalin B, and PPL2, all of which have a glycosyl hydrolase family 18 (GH18) domain. Hevamine is a class III endochitinase that hydrolyzes the linear polysaccharide chains of chitin and peptidoglycan and is important for defense against pathogenic bacteria and fungi. PPL2 (Parkia platycephala lectin 2) is a class III chitinase from Parkia platycephala seeds that hydrolyzes beta(1-4) glycosidic bonds linking 2-acetoamido-2-deoxy-beta-D-glucopyranose units in chitin.
Probab=20.88 E-value=2e+02 Score=27.38 Aligned_cols=34 Identities=21% Similarity=0.351 Sum_probs=25.0
Q ss_pred CCCCCccChHHHHHHHHHHHHHcCC-CCEEEeeCCCC
Q 016924 311 GSDWLSIYPKGIRELLLYLKKKYNP-PPIYITENGVG 346 (380)
Q Consensus 311 ~~gW~~i~P~gL~~~L~~i~~rY~~-ppI~ITENG~~ 346 (380)
..|| +.|.-|..++..+..++++ --||+=|--.+
T Consensus 234 ~~Gy--v~p~~l~~~v~~~~~~~~~fGGvM~Wd~~~~ 268 (280)
T cd02877 234 GSGY--VDPSELASLVLPVKQKSPNFGGVMLWDASQD 268 (280)
T ss_pred CCCc--cCHHHHHHHHHHHhhcCCCCcEEEEEhHhhc
Confidence 5676 8999999999999988732 33777654433
No 254
>PF11997 DUF3492: Domain of unknown function (DUF3492); InterPro: IPR022622 This domain is functionally uncharacterised and is found in bacteria, archaea and eukaryotes. It is typically between 259 to 282 amino acids in length. This region is found N-terminal PF00534 from PFAM. There are two conserved sequence motifs: GGVS and EHGIY.
Probab=20.72 E-value=92 Score=29.45 Aligned_cols=26 Identities=31% Similarity=0.544 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHcCCCCEEEeeCCCCCCC
Q 016924 321 GIRELLLYLKKKYNPPPIYITENGVGDVN 349 (380)
Q Consensus 321 gL~~~L~~i~~rY~~ppI~ITENG~~~~d 349 (380)
||--++. +.+|+.| ++|||.|+=..+
T Consensus 185 gl~g~~~--k~~~g~P-~lLTEHGIY~RE 210 (268)
T PF11997_consen 185 GLLGALA--KYRYGRP-FLLTEHGIYTRE 210 (268)
T ss_pred HHHHHHH--HHHhCCC-EEEecCCccHHH
Confidence 7777664 3467775 999999997654
No 255
>PF03932 CutC: CutC family; InterPro: IPR005627 Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF. A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length and are found in both eukaryotes and bacteria.; GO: 0005507 copper ion binding, 0055070 copper ion homeostasis; PDB: 2BDQ_A 3IWP_I 1X8C_B 1X7I_A 1TWD_B.
Probab=20.36 E-value=1.2e+02 Score=27.41 Aligned_cols=42 Identities=24% Similarity=0.396 Sum_probs=28.7
Q ss_pred cCcHHHHHHHHHcCCCEEEeccccccccccCCCCCCccchHHHHHHHHHHHHH
Q 016924 19 FRYKEDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELI 71 (380)
Q Consensus 19 ~~~~eDi~l~~~lG~~~~R~si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~ 71 (380)
....+||+.++++|++.+=|++- +. +|.+|. +...++++.+.
T Consensus 72 ~~M~~dI~~~~~~GadG~VfG~L------~~--dg~iD~---~~~~~Li~~a~ 113 (201)
T PF03932_consen 72 EIMKEDIRMLRELGADGFVFGAL------TE--DGEIDE---EALEELIEAAG 113 (201)
T ss_dssp HHHHHHHHHHHHTT-SEEEE--B------ET--TSSB-H---HHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCCeeEEEeE------CC--CCCcCH---HHHHHHHHhcC
Confidence 34778999999999999999874 22 488997 45677777764
No 256
>PLN02692 alpha-galactosidase
Probab=20.27 E-value=3e+02 Score=27.85 Aligned_cols=58 Identities=17% Similarity=0.303 Sum_probs=44.5
Q ss_pred ccCcHHHHHHHHHcCCCEEEeccccccccccCCCCCCccchHHHHHHHHHHHHHHCCCeEEEEcCCCCC
Q 016924 18 YFRYKEDIALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTLFHWDT 86 (380)
Q Consensus 18 y~~~~eDi~l~~~lG~~~~R~si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~~tL~h~~~ 86 (380)
+..++.|++.+++-|++.+.+.-.= .. +. ..-+.|..+-++|.+-|-..+..|+.|..
T Consensus 156 ~g~e~~DA~~fA~WGvDylK~D~C~----~~----~~---~~~~~y~~m~~AL~~tGRpI~~SlC~wg~ 213 (412)
T PLN02692 156 LGHEEQDAKTFASWGIDYLKYDNCN----ND----GS---KPTVRYPVMTRALMKAGRPIFFSLCEWGD 213 (412)
T ss_pred hHHHHHHHHHHHhcCCCEEeccccC----CC----Cc---chhHHHHHHHHHHHHhCCCeEEEecCCCc
Confidence 6678999999999999998876541 11 11 12367999999999999877788988763
No 257
>PLN02561 triosephosphate isomerase
Probab=20.25 E-value=3.1e+02 Score=25.75 Aligned_cols=48 Identities=21% Similarity=0.322 Sum_probs=35.6
Q ss_pred HHHHHHcCCCEEEeccccccccccCCCCCCccchHHHHHHHHHHHHHHCCCeEEEEc
Q 016924 25 IALVKQVGFDSIRFSISWSRILPHGNISGGVNQQGVDFYNNLINELISNGLTPFVTL 81 (380)
Q Consensus 25 i~l~~~lG~~~~R~si~W~ri~p~~~~~g~~n~~~~~~y~~~i~~l~~~gi~p~~tL 81 (380)
..+++++|++.+=++=|=.|.. -++-| +...+-+..++++||+|++++
T Consensus 81 ~~mL~d~G~~~viiGHSERR~~-----f~Etd----~~v~~Kv~~al~~gl~pIvCv 128 (253)
T PLN02561 81 AEMLVNLGIPWVILGHSERRAL-----LGESN----EFVGDKVAYALSQGLKVIACV 128 (253)
T ss_pred HHHHHHcCCCEEEECcccccCc-----cCCCh----HHHHHHHHHHHHCcCEEEEEc
Confidence 5788999999888887633322 13333 456788889999999999998
No 258
>PF11790 Glyco_hydro_cc: Glycosyl hydrolase catalytic core; InterPro: IPR024655 This entry represents the glycosyl hydrolase catalytic core of a group of uncharacterised proteins.
Probab=20.20 E-value=3.1e+02 Score=25.18 Aligned_cols=52 Identities=27% Similarity=0.551 Sum_probs=36.5
Q ss_pred hHHHHHHHHHHHHHHCCCeEEEEcCCCCCcHhHHHhhCCCCChhhHHHHHHHHHHHHHHhCCcCcEEEe
Q 016924 58 QGVDFYNNLINELISNGLTPFVTLFHWDTPQALEDEYGGFLSPKIVKDFGDYADLCFKEFGDRVKHWIT 126 (380)
Q Consensus 58 ~~~~~y~~~i~~l~~~gi~p~~tL~h~~~P~~l~~~~ggw~~~~~~~~f~~ya~~~~~~~~~~v~~w~t 126 (380)
.++.+.+++++.|. .|..+=+.-.||- ..+ ++.|.++.+.+-++|| -+.|+|
T Consensus 120 ~g~~Wl~~F~~~~~-~~~~~D~iavH~Y-------------~~~-~~~~~~~i~~~~~~~~--kPIWIT 171 (239)
T PF11790_consen 120 GGLDWLSQFLSACA-RGCRVDFIAVHWY-------------GGD-ADDFKDYIDDLHNRYG--KPIWIT 171 (239)
T ss_pred CccHHHHHHHHhcc-cCCCccEEEEecC-------------CcC-HHHHHHHHHHHHHHhC--CCEEEE
Confidence 45678888888887 5555544434432 122 6789999999999999 688988
No 259
>PRK09261 phospho-2-dehydro-3-deoxyheptonate aldolase; Validated
Probab=20.14 E-value=2e+02 Score=28.41 Aligned_cols=78 Identities=15% Similarity=0.247 Sum_probs=52.4
Q ss_pred CCcccCcHHHHHHHHHcCCC-------EE-------EeccccccccccCCCCCCcc-chHHHHHHHHHHHHHHCCCeEEE
Q 016924 15 DNFYFRYKEDIALVKQVGFD-------SI-------RFSISWSRILPHGNISGGVN-QQGVDFYNNLINELISNGLTPFV 79 (380)
Q Consensus 15 ~~~y~~~~eDi~l~~~lG~~-------~~-------R~si~W~ri~p~~~~~g~~n-~~~~~~y~~~i~~l~~~gi~p~~ 79 (380)
.+..+.-.|-.+.+|++|-+ .. |.+.+|--+.-++..+|.++ ++||...++++-.+.+.|+...-
T Consensus 63 Ied~e~a~eyA~~Lk~l~~~~~d~l~ivmR~y~~KPRTs~g~kGl~~DP~ldgs~~i~~GL~~~R~ll~~~~e~Glpvat 142 (349)
T PRK09261 63 IHDPKAALEYARRLAKLREELKDKLEIVMRVYFEKPRTTVGWKGLINDPDLDGSFDINDGLRIARKLLLDINELGLPAAT 142 (349)
T ss_pred CCCHHHHHHHHHHHHHHHhhhhcceEEEEEeccccCCCCCCCcCCCcCcCccccccHHHHHHHHHHHHHHHHHhCCCeEE
Confidence 44444445555667777653 44 55566777764443468888 89999999998889999997776
Q ss_pred EcCCCCCcHhHHH
Q 016924 80 TLFHWDTPQALED 92 (380)
Q Consensus 80 tL~h~~~P~~l~~ 92 (380)
-+..-..|+.+.+
T Consensus 143 E~ld~~~~~y~~d 155 (349)
T PRK09261 143 EFLDPITPQYIAD 155 (349)
T ss_pred EecccccHHHHHh
Confidence 5655555655554
Done!