BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016925
(380 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1RYY|A Chain A, Acetobacter Turbidans Alpha-Amino Acid Ester Hydrolase
Y206a Mutant
pdb|1RYY|B Chain B, Acetobacter Turbidans Alpha-Amino Acid Ester Hydrolase
Y206a Mutant
pdb|1RYY|C Chain C, Acetobacter Turbidans Alpha-Amino Acid Ester Hydrolase
Y206a Mutant
pdb|1RYY|D Chain D, Acetobacter Turbidans Alpha-Amino Acid Ester Hydrolase
Y206a Mutant
pdb|1RYY|E Chain E, Acetobacter Turbidans Alpha-Amino Acid Ester Hydrolase
Y206a Mutant
pdb|1RYY|F Chain F, Acetobacter Turbidans Alpha-Amino Acid Ester Hydrolase
Y206a Mutant
pdb|1RYY|G Chain G, Acetobacter Turbidans Alpha-Amino Acid Ester Hydrolase
Y206a Mutant
pdb|1RYY|H Chain H, Acetobacter Turbidans Alpha-Amino Acid Ester Hydrolase
Y206a Mutant
Length = 652
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 25/57 (43%), Gaps = 10/57 (17%)
Query: 130 YLSWEALCK------FTPLYYFDTSGYAFTYPLARIFGCRVICYTHYPTISLDMISR 180
Y SW ++C+ TPLY D G +FT+P A Y P + ISR
Sbjct: 391 YRSWPSVCESNCTGGLTPLYLADGHGLSFTHPAAD----GADSYVSDPAHPVPFISR 443
>pdb|2B4K|A Chain A, Acetobacter Turbidans Alpha-Amino Acid Ester Hydrolase
Complexed With Phenylglycine
pdb|2B4K|B Chain B, Acetobacter Turbidans Alpha-Amino Acid Ester Hydrolase
Complexed With Phenylglycine
pdb|2B4K|C Chain C, Acetobacter Turbidans Alpha-Amino Acid Ester Hydrolase
Complexed With Phenylglycine
pdb|2B4K|D Chain D, Acetobacter Turbidans Alpha-Amino Acid Ester Hydrolase
Complexed With Phenylglycine
pdb|2B9V|A Chain A, Acetobacter Turbidans Alpha-amino Acid Ester Hydrolase
pdb|2B9V|B Chain B, Acetobacter Turbidans Alpha-amino Acid Ester Hydrolase
pdb|2B9V|C Chain C, Acetobacter Turbidans Alpha-amino Acid Ester Hydrolase
pdb|2B9V|D Chain D, Acetobacter Turbidans Alpha-amino Acid Ester Hydrolase
pdb|2B9V|E Chain E, Acetobacter Turbidans Alpha-amino Acid Ester Hydrolase
pdb|2B9V|F Chain F, Acetobacter Turbidans Alpha-amino Acid Ester Hydrolase
pdb|2B9V|G Chain G, Acetobacter Turbidans Alpha-amino Acid Ester Hydrolase
pdb|2B9V|H Chain H, Acetobacter Turbidans Alpha-amino Acid Ester Hydrolase
pdb|2B9V|I Chain I, Acetobacter Turbidans Alpha-amino Acid Ester Hydrolase
pdb|2B9V|J Chain J, Acetobacter Turbidans Alpha-amino Acid Ester Hydrolase
pdb|2B9V|K Chain K, Acetobacter Turbidans Alpha-amino Acid Ester Hydrolase
pdb|2B9V|L Chain L, Acetobacter Turbidans Alpha-amino Acid Ester Hydrolase
pdb|2B9V|M Chain M, Acetobacter Turbidans Alpha-amino Acid Ester Hydrolase
pdb|2B9V|N Chain N, Acetobacter Turbidans Alpha-amino Acid Ester Hydrolase
pdb|2B9V|O Chain O, Acetobacter Turbidans Alpha-amino Acid Ester Hydrolase
pdb|2B9V|P Chain P, Acetobacter Turbidans Alpha-amino Acid Ester Hydrolase
Length = 652
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 25/57 (43%), Gaps = 10/57 (17%)
Query: 130 YLSWEALCK------FTPLYYFDTSGYAFTYPLARIFGCRVICYTHYPTISLDMISR 180
Y SW ++C+ TPLY D G +FT+P A Y P + ISR
Sbjct: 391 YRSWPSVCESNCTGGLTPLYLADGHGLSFTHPAAD----GADSYVSDPAHPVPFISR 443
>pdb|1NX9|A Chain A, Acetobacter Turbidans Alpha-Amino Acid Ester Hydrolase
S205a Mutant Complexed With Ampicillin
pdb|1NX9|B Chain B, Acetobacter Turbidans Alpha-Amino Acid Ester Hydrolase
S205a Mutant Complexed With Ampicillin
pdb|1NX9|C Chain C, Acetobacter Turbidans Alpha-Amino Acid Ester Hydrolase
S205a Mutant Complexed With Ampicillin
pdb|1NX9|D Chain D, Acetobacter Turbidans Alpha-Amino Acid Ester Hydrolase
S205a Mutant Complexed With Ampicillin
Length = 652
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 25/57 (43%), Gaps = 10/57 (17%)
Query: 130 YLSWEALCK------FTPLYYFDTSGYAFTYPLARIFGCRVICYTHYPTISLDMISR 180
Y SW ++C+ TPLY D G +FT+P A Y P + ISR
Sbjct: 391 YRSWPSVCESNCTGGLTPLYLADGHGLSFTHPAAD----GADSYVSDPAHPVPFISR 443
>pdb|3CGM|A Chain A, Crystal Structure Of Thermophilic Slyd
pdb|3CGN|A Chain A, Crystal Structure Of Thermophilic Slyd
pdb|3LUO|A Chain A, Crystal Structure And Functional Characterization Of The
The Prolyl Isomerase And Chaperone Slyd
Length = 158
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Query: 247 KRVYPPCDTSGLQVLPLERSTEYPAIISVAQFRPE--KAHPLQLEAFSVALRKLDADLPR 304
++ Y P D G+QV+PL E ++ AQF + + +P+ L +V ++ D
Sbjct: 60 EKAYGPHDPEGVQVVPLSAFPEDAEVVPGAQFYAQDMEGNPMPLTVVAVEGEEVTVDFNH 119
Query: 305 P 305
P
Sbjct: 120 P 120
>pdb|4G59|C Chain C, Crystal Structure Of The Murine Cytomegalovirus Mhc-I
Homolog M152 With Ligand Rae-1 Gamma
pdb|4G59|D Chain D, Crystal Structure Of The Murine Cytomegalovirus Mhc-I
Homolog M152 With Ligand Rae-1 Gamma
Length = 321
Score = 28.9 bits (63), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
Query: 171 PTISLDMISRVREGS--SMYNNNASIAQSNWLSQCKIV 206
P +S D I+R +GS S+ +NA++ Q W S C+ +
Sbjct: 138 PDVSEDDIARYGQGSGISILRDNAALLQKRWTSFCRKI 175
>pdb|4AQ5|E Chain E, Gating Movement In Acetylcholine Receptor Analysed By
Time- Resolved Electron Cryo-Microscopy (Closed Class)
pdb|4AQ9|E Chain E, Gating Movement In Acetylcholine Receptor Analysed By
Time-Resolved Electron Cryo-Microscopy (Open Class)
Length = 488
Score = 28.5 bits (62), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 14/65 (21%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Query: 280 PEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVE 339
PEK P + +F + ++ + L +PR + + + D L+ + + ++ + V+
Sbjct: 343 PEKPQPRRRSSFGIMIKAEEYILKKPRSELM--FEEQKDRHGLKRVNKMTSDIDIGTTVD 400
Query: 340 FYKNL 344
YK+L
Sbjct: 401 LYKDL 405
>pdb|1OED|E Chain E, Structure Of Acetylcholine Receptor Pore From Electron
Images
Length = 260
Score = 28.5 bits (62), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 14/65 (21%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Query: 280 PEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVE 339
PEK P + +F + ++ + L +PR + + + D L+ + + ++ + V+
Sbjct: 126 PEKPQPRRRSSFGIMIKAEEYILKKPRSELM--FEEQKDRHGLKRVNKMTSDIDIGTTVD 183
Query: 340 FYKNL 344
YK+L
Sbjct: 184 LYKDL 188
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.138 0.436
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,860,057
Number of Sequences: 62578
Number of extensions: 494018
Number of successful extensions: 1307
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1307
Number of HSP's gapped (non-prelim): 7
length of query: 380
length of database: 14,973,337
effective HSP length: 101
effective length of query: 279
effective length of database: 8,652,959
effective search space: 2414175561
effective search space used: 2414175561
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 52 (24.6 bits)