Query 016925
Match_columns 380
No_of_seqs 131 out of 2027
Neff 8.5
Searched_HMMs 46136
Date Fri Mar 29 04:03:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016925.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016925hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02949 transferase, transfer 100.0 1.4E-53 3.1E-58 425.5 40.8 348 23-370 22-370 (463)
2 KOG1387 Glycosyltransferase [C 100.0 1.2E-51 2.6E-56 376.5 32.2 352 10-374 14-376 (465)
3 cd03806 GT1_ALG11_like This fa 100.0 2.2E-46 4.7E-51 371.6 36.8 337 35-371 1-341 (419)
4 cd03805 GT1_ALG2_like This fam 100.0 6.6E-27 1.4E-31 229.4 29.5 298 35-369 1-314 (392)
5 cd03796 GT1_PIG-A_like This fa 99.9 3.9E-25 8.5E-30 218.2 27.6 277 36-369 1-284 (398)
6 PRK15179 Vi polysaccharide bio 99.9 3.5E-23 7.6E-28 214.4 32.4 291 36-372 283-609 (694)
7 TIGR03449 mycothiol_MshA UDP-N 99.9 1.2E-23 2.6E-28 207.7 26.0 289 41-370 13-318 (405)
8 PRK10307 putative glycosyl tra 99.9 1E-23 2.2E-28 209.0 25.3 294 35-368 1-317 (412)
9 PLN02871 UDP-sulfoquinovose:DA 99.9 1.2E-22 2.6E-27 204.5 28.2 274 31-368 55-345 (465)
10 PRK15427 colanic acid biosynth 99.9 8.6E-23 1.9E-27 202.0 25.9 143 216-369 169-319 (406)
11 TIGR03088 stp2 sugar transfera 99.9 3.1E-22 6.8E-27 195.4 28.9 276 34-371 1-289 (374)
12 cd03818 GT1_ExpC_like This fam 99.9 1.5E-21 3.2E-26 192.5 28.8 290 36-368 1-314 (396)
13 cd04962 GT1_like_5 This family 99.9 7E-22 1.5E-26 192.0 25.5 272 35-370 1-286 (371)
14 cd03800 GT1_Sucrose_synthase T 99.9 1.8E-21 3.8E-26 190.6 27.5 285 46-369 19-317 (398)
15 cd03812 GT1_CapH_like This fam 99.9 1.7E-21 3.7E-26 188.0 26.2 272 36-372 1-284 (358)
16 cd05844 GT1_like_7 Glycosyltra 99.9 7.1E-22 1.5E-26 191.6 23.6 203 135-372 77-288 (367)
17 cd03804 GT1_wbaZ_like This fam 99.9 7E-22 1.5E-26 191.3 23.3 278 36-374 1-280 (351)
18 TIGR02472 sucr_P_syn_N sucrose 99.9 8E-21 1.7E-25 189.9 30.2 298 46-371 24-357 (439)
19 cd03819 GT1_WavL_like This fam 99.9 4.9E-21 1.1E-25 184.6 27.6 260 40-369 3-279 (355)
20 TIGR02468 sucrsPsyn_pln sucros 99.9 7E-21 1.5E-25 201.2 29.8 326 28-371 163-588 (1050)
21 cd04955 GT1_like_6 This family 99.9 7.3E-21 1.6E-25 183.8 26.8 273 36-370 1-284 (363)
22 PRK09922 UDP-D-galactose:(gluc 99.9 2.9E-21 6.3E-26 188.0 24.0 263 35-369 1-272 (359)
23 PLN02316 synthase/transferase 99.9 1.1E-20 2.3E-25 200.3 29.7 291 30-369 583-934 (1036)
24 cd03795 GT1_like_4 This family 99.9 1.7E-20 3.6E-25 180.7 28.5 268 36-369 1-280 (357)
25 PRK00654 glgA glycogen synthas 99.9 1.5E-20 3.2E-25 189.3 27.7 305 35-369 1-371 (466)
26 cd03816 GT1_ALG1_like This fam 99.9 1E-20 2.2E-25 187.9 24.6 283 34-361 3-320 (415)
27 cd03802 GT1_AviGT4_like This f 99.9 1.7E-20 3.7E-25 179.4 23.5 251 35-369 1-259 (335)
28 cd03809 GT1_mtfB_like This fam 99.9 1.6E-20 3.4E-25 180.7 23.3 277 36-369 1-287 (365)
29 TIGR02095 glgA glycogen/starch 99.9 5E-20 1.1E-24 185.9 27.5 311 35-369 1-380 (473)
30 TIGR02149 glgA_Coryne glycogen 99.9 6.5E-20 1.4E-24 179.6 27.4 283 35-374 1-300 (388)
31 TIGR02470 sucr_synth sucrose s 99.9 2E-20 4.3E-25 194.1 24.7 315 30-370 251-659 (784)
32 cd03821 GT1_Bme6_like This fam 99.9 4.6E-20 9.9E-25 177.0 25.7 288 36-374 1-301 (375)
33 PRK15490 Vi polysaccharide bio 99.9 6.9E-20 1.5E-24 182.7 27.1 198 134-371 274-489 (578)
34 cd03799 GT1_amsK_like This is 99.9 1.1E-19 2.5E-24 174.8 27.1 271 36-375 1-282 (355)
35 KOG1111 N-acetylglucosaminyltr 99.9 3E-21 6.4E-26 178.7 14.5 274 35-369 5-286 (426)
36 PLN02939 transferase, transfer 99.9 1.5E-19 3.3E-24 188.7 28.6 319 27-369 474-871 (977)
37 cd04951 GT1_WbdM_like This fam 99.9 1.3E-19 2.9E-24 174.7 25.9 263 36-369 1-277 (360)
38 PRK14098 glycogen synthase; Pr 99.9 1.7E-19 3.8E-24 182.1 27.6 143 215-369 214-396 (489)
39 cd03792 GT1_Trehalose_phosphor 99.9 1.7E-19 3.6E-24 176.4 26.5 274 36-375 1-294 (372)
40 PRK15484 lipopolysaccharide 1, 99.9 9.3E-20 2E-24 178.9 24.7 144 220-370 138-293 (380)
41 cd03820 GT1_amsD_like This fam 99.9 4.4E-19 9.6E-24 168.2 28.5 270 36-374 1-272 (348)
42 cd03811 GT1_WabH_like This fam 99.9 1.9E-19 4.1E-24 170.8 24.8 274 36-374 1-283 (353)
43 cd03791 GT1_Glycogen_synthase_ 99.9 2.8E-19 6.1E-24 180.4 26.7 144 214-369 203-385 (476)
44 cd03817 GT1_UGDG_like This fam 99.8 7.3E-19 1.6E-23 168.8 27.6 281 36-369 1-293 (374)
45 cd03822 GT1_ecORF704_like This 99.8 4.7E-19 1E-23 170.5 25.8 269 36-370 1-285 (366)
46 cd03801 GT1_YqgM_like This fam 99.8 1.6E-18 3.6E-23 164.9 28.9 279 36-369 1-290 (374)
47 PRK14099 glycogen synthase; Pr 99.8 7.4E-19 1.6E-23 177.3 26.7 310 33-369 2-384 (485)
48 cd03798 GT1_wlbH_like This fam 99.8 2.7E-18 5.8E-23 164.2 28.2 279 37-369 1-293 (377)
49 cd03807 GT1_WbnK_like This fam 99.8 2.1E-18 4.5E-23 164.9 26.8 269 36-369 1-283 (365)
50 PLN02275 transferase, transfer 99.8 3E-18 6.5E-23 167.7 27.6 143 210-362 154-313 (371)
51 cd03823 GT1_ExpE7_like This fa 99.8 3.3E-18 7.2E-23 163.7 26.8 272 36-375 1-284 (359)
52 TIGR03087 stp1 sugar transfera 99.8 4.1E-18 8.8E-23 168.1 26.5 142 210-368 161-312 (397)
53 cd03813 GT1_like_3 This family 99.8 6.7E-19 1.5E-23 177.7 20.9 208 140-369 173-385 (475)
54 PLN00142 sucrose synthase 99.8 1.1E-18 2.4E-23 181.3 21.6 300 46-370 301-682 (815)
55 PLN02846 digalactosyldiacylgly 99.8 1.2E-17 2.6E-22 165.6 28.0 129 221-370 180-316 (462)
56 cd03794 GT1_wbuB_like This fam 99.8 8.6E-18 1.9E-22 161.9 26.0 292 36-367 1-307 (394)
57 cd03808 GT1_cap1E_like This fa 99.8 2.4E-17 5.1E-22 157.0 28.5 276 36-374 1-283 (359)
58 PRK10125 putative glycosyl tra 99.8 4.2E-18 9.2E-23 168.3 23.9 129 217-370 186-322 (405)
59 cd03814 GT1_like_2 This family 99.8 7.4E-18 1.6E-22 161.8 23.9 271 36-371 1-283 (364)
60 TIGR02918 accessory Sec system 99.7 9.6E-17 2.1E-21 162.2 20.3 136 219-370 268-408 (500)
61 PLN02501 digalactosyldiacylgly 99.7 1.5E-15 3.3E-20 153.7 25.8 196 133-371 427-635 (794)
62 cd03825 GT1_wcfI_like This fam 99.7 1.8E-15 3.9E-20 146.0 22.9 137 220-372 134-282 (365)
63 cd04946 GT1_AmsK_like This fam 99.7 1.8E-15 3.8E-20 150.0 20.3 142 216-369 178-325 (407)
64 cd04949 GT1_gtfA_like This fam 99.7 2.6E-15 5.7E-20 146.4 18.8 138 219-369 155-293 (372)
65 PRK00726 murG undecaprenyldiph 99.7 8.5E-15 1.8E-19 142.3 21.7 253 34-363 1-260 (357)
66 cd03785 GT1_MurG MurG is an N- 99.6 2.6E-14 5.7E-19 138.2 22.5 243 47-363 9-260 (350)
67 TIGR01133 murG undecaprenyldip 99.6 4.1E-13 8.8E-18 129.7 21.2 251 35-363 1-258 (348)
68 PRK05749 3-deoxy-D-manno-octul 99.6 4.7E-12 1E-16 126.1 28.4 250 48-368 60-334 (425)
69 PF13439 Glyco_transf_4: Glyco 99.5 8.4E-14 1.8E-18 120.1 13.7 176 37-259 1-177 (177)
70 PHA01633 putative glycosyl tra 99.5 1.3E-13 2.8E-18 131.9 15.0 135 221-371 92-240 (335)
71 PHA01630 putative group 1 glyc 99.5 4.7E-13 1E-17 128.8 14.2 131 219-369 92-224 (331)
72 PRK13609 diacylglycerol glucos 99.5 3.1E-12 6.7E-17 125.5 19.2 126 219-361 145-279 (380)
73 cd03788 GT1_TPS Trehalose-6-Ph 99.5 2E-13 4.3E-18 137.2 9.8 124 244-371 227-377 (460)
74 KOG0853 Glycosyltransferase [C 99.4 1.2E-11 2.6E-16 121.8 18.7 299 34-369 34-380 (495)
75 TIGR02400 trehalose_OtsA alpha 99.4 2E-11 4.4E-16 122.2 19.8 154 221-375 183-376 (456)
76 cd01635 Glycosyltransferase_GT 99.3 2.2E-10 4.9E-15 102.3 20.5 92 274-375 109-202 (229)
77 cd04950 GT1_like_1 Glycosyltra 99.3 2.2E-11 4.7E-16 119.3 12.6 131 213-364 145-282 (373)
78 cd03793 GT1_Glycogen_synthase_ 99.3 2.7E-10 5.8E-15 114.6 19.4 85 213-298 218-328 (590)
79 COG0297 GlgA Glycogen synthase 99.2 1.7E-09 3.7E-14 107.9 22.7 142 215-368 202-382 (487)
80 PLN03063 alpha,alpha-trehalose 99.2 5.6E-11 1.2E-15 126.3 12.6 127 244-375 242-396 (797)
81 PLN02605 monogalactosyldiacylg 99.2 4.5E-10 9.7E-15 110.4 17.7 133 219-362 148-289 (382)
82 PRK13608 diacylglycerol glucos 99.2 6.6E-10 1.4E-14 109.6 18.9 126 220-362 146-280 (391)
83 PF13579 Glyco_trans_4_4: Glyc 99.2 1.3E-10 2.8E-15 98.4 10.8 155 48-252 1-160 (160)
84 PRK14501 putative bifunctional 99.1 1.5E-09 3.3E-14 115.0 18.1 129 244-372 228-379 (726)
85 cd03786 GT1_UDP-GlcNAc_2-Epime 99.1 3.4E-09 7.4E-14 103.0 18.1 133 220-364 140-286 (363)
86 TIGR02398 gluc_glyc_Psyn gluco 99.1 9.8E-09 2.1E-13 102.9 19.8 130 245-374 249-401 (487)
87 PF00534 Glycos_transf_1: Glyc 99.1 6.7E-10 1.4E-14 96.2 9.6 94 268-371 14-109 (172)
88 TIGR00236 wecB UDP-N-acetylglu 99.1 3.2E-08 6.9E-13 96.6 22.4 131 221-363 141-282 (365)
89 PRK09814 beta-1,6-galactofuran 99.0 3.4E-08 7.3E-13 95.3 17.8 126 214-372 116-246 (333)
90 PRK00025 lpxB lipid-A-disaccha 98.9 3.6E-08 7.8E-13 96.5 16.9 127 219-363 132-269 (380)
91 TIGR00215 lpxB lipid-A-disacch 98.9 1.1E-07 2.4E-12 93.6 19.5 182 131-363 80-275 (385)
92 COG0438 RfaG Glycosyltransfera 98.9 8.5E-08 1.8E-12 89.9 17.5 141 221-371 150-293 (381)
93 TIGR03713 acc_sec_asp1 accesso 98.8 7.6E-08 1.6E-12 97.9 12.9 137 220-368 271-442 (519)
94 PF09314 DUF1972: Domain of un 98.7 2.3E-06 4.9E-11 74.9 18.6 173 34-254 1-185 (185)
95 PF13692 Glyco_trans_1_4: Glyc 98.5 2.1E-07 4.5E-12 77.1 5.6 76 270-364 3-79 (135)
96 TIGR02094 more_P_ylases alpha- 98.5 1.1E-05 2.4E-10 83.4 18.5 101 268-368 388-493 (601)
97 PLN03064 alpha,alpha-trehalose 98.3 1.8E-05 3.8E-10 85.0 17.0 127 245-375 327-480 (934)
98 KOG2941 Beta-1,4-mannosyltrans 98.3 0.00056 1.2E-08 64.5 23.8 287 31-365 9-348 (444)
99 COG0707 MurG UDP-N-acetylgluco 98.3 0.0003 6.5E-09 68.3 22.2 244 47-362 10-259 (357)
100 TIGR03492 conserved hypothetic 98.2 0.00019 4E-09 71.0 19.5 276 45-363 4-304 (396)
101 PRK12446 undecaprenyldiphospho 98.2 0.00042 9E-09 67.5 21.5 237 48-362 12-259 (352)
102 PF13528 Glyco_trans_1_3: Glyc 98.1 0.00054 1.2E-08 65.3 19.9 73 268-369 192-265 (318)
103 cd04299 GT1_Glycogen_Phosphory 98.0 0.00026 5.7E-09 74.9 17.0 99 270-368 479-582 (778)
104 PF13477 Glyco_trans_4_2: Glyc 97.9 0.00062 1.3E-08 56.5 14.6 135 36-229 1-139 (139)
105 COG1519 KdtA 3-deoxy-D-manno-o 97.9 0.0039 8.4E-08 60.7 21.1 238 49-358 60-320 (419)
106 TIGR03590 PseG pseudaminic aci 97.8 0.0031 6.6E-08 59.4 20.1 79 269-364 171-250 (279)
107 PF04007 DUF354: Protein of un 97.8 0.0058 1.3E-07 58.8 20.9 237 35-361 1-254 (335)
108 TIGR02919 accessory Sec system 97.7 0.00067 1.5E-08 67.7 13.1 129 220-374 238-367 (438)
109 PRK10117 trehalose-6-phosphate 97.4 0.011 2.4E-07 59.3 17.3 117 245-361 220-357 (474)
110 PF00982 Glyco_transf_20: Glyc 97.2 0.0086 1.9E-07 60.4 14.6 154 221-374 197-392 (474)
111 PF08323 Glyco_transf_5: Starc 97.1 0.0047 1E-07 57.0 10.9 40 36-77 1-43 (245)
112 PF05693 Glycogen_syn: Glycoge 97.1 0.0072 1.6E-07 61.6 12.3 83 213-296 213-321 (633)
113 COG0380 OtsA Trehalose-6-phosp 97.0 0.019 4.1E-07 57.5 14.5 122 245-366 245-390 (486)
114 PLN02205 alpha,alpha-trehalose 97.0 0.053 1.2E-06 58.7 18.5 121 245-365 301-446 (854)
115 COG3914 Spy Predicted O-linked 97.0 0.43 9.3E-06 48.4 23.3 88 269-363 428-516 (620)
116 COG4671 Predicted glycosyl tra 96.7 0.63 1.4E-05 44.6 21.8 278 30-364 5-304 (400)
117 PF12000 Glyco_trans_4_3: Gkyc 96.5 0.055 1.2E-06 46.9 12.0 103 138-258 64-170 (171)
118 PF12038 DUF3524: Domain of un 96.4 0.057 1.2E-06 46.1 11.0 34 35-75 1-34 (168)
119 TIGR00661 MJ1255 conserved hyp 96.3 1 2.2E-05 43.0 21.4 29 334-363 227-255 (321)
120 PRK02797 4-alpha-L-fucosyltran 96.0 0.86 1.9E-05 43.1 17.5 155 210-374 87-247 (322)
121 cd03784 GT1_Gtf_like This fami 95.9 1.5 3.3E-05 43.0 20.5 37 35-76 1-37 (401)
122 PRK10017 colanic acid biosynth 95.9 2.3 4.9E-05 42.6 25.4 43 35-77 1-43 (426)
123 PF02684 LpxB: Lipid-A-disacch 95.5 0.49 1.1E-05 46.3 14.7 128 219-362 131-267 (373)
124 TIGR03568 NeuC_NnaA UDP-N-acet 95.1 0.59 1.3E-05 45.7 14.1 132 220-363 143-289 (365)
125 PF02350 Epimerase_2: UDP-N-ac 94.1 0.89 1.9E-05 44.1 12.6 134 219-364 120-267 (346)
126 PF07429 Glyco_transf_56: 4-al 93.5 7.6 0.00016 37.4 17.5 151 213-372 129-284 (360)
127 PF04413 Glycos_transf_N: 3-De 93.4 1.5 3.2E-05 38.6 11.5 39 212-250 140-178 (186)
128 COG0763 LpxB Lipid A disacchar 92.6 7.5 0.00016 37.9 15.8 125 218-358 133-267 (381)
129 PF13844 Glyco_transf_41: Glyc 91.8 1.3 2.8E-05 44.6 10.0 83 270-361 284-367 (468)
130 PRK01021 lpxB lipid-A-disaccha 89.0 12 0.00025 39.1 14.2 125 219-363 359-496 (608)
131 PF08660 Alg14: Oligosaccharid 88.9 11 0.00025 32.5 12.3 111 47-166 7-126 (170)
132 COG1817 Uncharacterized protei 86.4 21 0.00045 34.0 12.9 142 50-253 12-157 (346)
133 KOG3742 Glycogen synthase [Car 83.5 1 2.2E-05 44.4 3.2 82 214-296 245-352 (692)
134 PF00862 Sucrose_synth: Sucros 80.6 13 0.00028 37.7 9.6 34 138-171 399-434 (550)
135 TIGR03646 YtoQ_fam YtoQ family 79.5 7 0.00015 32.0 6.1 59 306-370 2-90 (144)
136 TIGR03609 S_layer_CsaB polysac 79.2 56 0.0012 30.6 15.8 133 214-360 120-255 (298)
137 cd03789 GT1_LPS_heptosyltransf 78.9 13 0.00027 34.6 8.8 66 285-362 140-205 (279)
138 PF06925 MGDG_synth: Monogalac 78.4 12 0.00026 32.0 7.9 29 220-249 136-165 (169)
139 PF11997 DUF3492: Domain of un 78.3 8.9 0.00019 35.8 7.5 86 142-238 174-262 (268)
140 COG0859 RfaF ADP-heptose:LPS h 77.8 67 0.0015 30.8 20.9 80 270-361 176-257 (334)
141 PF11071 DUF2872: Protein of u 77.6 6.6 0.00014 32.1 5.4 51 318-370 7-87 (141)
142 PRK10422 lipopolysaccharide co 75.2 25 0.00054 33.9 10.0 81 271-361 186-268 (352)
143 TIGR02195 heptsyl_trn_II lipop 73.7 25 0.00053 33.6 9.5 80 269-361 174-257 (334)
144 PRK02261 methylaspartate mutas 73.6 25 0.00054 29.2 8.2 99 246-355 32-132 (137)
145 COG1056 NadR Nicotinamide mono 73.4 19 0.00042 31.1 7.6 66 269-342 3-76 (172)
146 PF08288 PIGA: PIGA (GPI ancho 71.9 13 0.00029 28.3 5.5 70 96-171 12-85 (90)
147 PF04464 Glyphos_transf: CDP-G 70.4 16 0.00034 35.5 7.4 135 218-371 131-285 (369)
148 PRK10916 ADP-heptose:LPS hepto 68.2 32 0.0007 33.1 9.0 39 35-76 1-39 (348)
149 TIGR02201 heptsyl_trn_III lipo 66.5 55 0.0012 31.4 10.2 83 271-361 184-266 (344)
150 PF01075 Glyco_transf_9: Glyco 64.7 69 0.0015 28.8 10.1 83 270-361 107-189 (247)
151 PF10087 DUF2325: Uncharacteri 64.5 16 0.00035 28.1 5.0 40 322-362 12-55 (97)
152 KOG1160 Fe-S oxidoreductase [E 63.8 16 0.00034 36.3 5.6 80 284-374 430-511 (601)
153 PF04392 ABC_sub_bind: ABC tra 63.8 77 0.0017 29.6 10.5 131 217-363 55-192 (294)
154 PF12273 RCR: Chitin synthesis 62.7 5.9 0.00013 32.6 2.3 27 7-34 3-29 (130)
155 TIGR02193 heptsyl_trn_I lipopo 61.2 99 0.0021 29.1 10.8 77 271-361 182-260 (319)
156 TIGR03141 cytochro_ccmD heme e 60.7 13 0.00027 24.5 3.1 21 1-21 1-21 (45)
157 PF00185 OTCace: Aspartate/orn 57.4 78 0.0017 26.8 8.4 79 269-364 2-83 (158)
158 cd05565 PTS_IIB_lactose PTS_II 56.6 31 0.00066 27.0 5.2 55 308-367 5-59 (99)
159 COG0381 WecB UDP-N-acetylgluco 55.6 2.1E+02 0.0046 28.1 21.5 129 219-360 143-286 (383)
160 TIGR03682 arCOG04112 arCOG0411 55.3 27 0.00058 33.3 5.7 56 304-361 213-268 (308)
161 PF00205 TPP_enzyme_M: Thiamin 55.2 21 0.00045 29.2 4.4 56 304-361 12-83 (137)
162 PRK10834 vancomycin high tempe 55.2 58 0.0013 29.8 7.5 68 285-358 68-135 (239)
163 PRK07742 phosphate butyryltran 55.0 1.2E+02 0.0027 28.6 10.1 79 284-377 25-111 (299)
164 PF00763 THF_DHG_CYH: Tetrahyd 53.7 32 0.00069 27.6 5.1 52 303-356 30-82 (117)
165 cd01967 Nitrogenase_MoFe_alpha 53.0 1E+02 0.0022 30.3 9.7 93 280-377 134-228 (406)
166 cd05564 PTS_IIB_chitobiose_lic 52.2 44 0.00095 25.7 5.5 56 307-367 3-58 (96)
167 cd00316 Oxidoreductase_nitroge 52.0 87 0.0019 30.6 9.0 94 280-377 126-221 (399)
168 PRK02910 light-independent pro 50.8 1.3E+02 0.0029 30.9 10.3 72 304-377 158-230 (519)
169 PRK02102 ornithine carbamoyltr 50.6 2.4E+02 0.0052 27.2 12.0 122 218-362 98-231 (331)
170 PRK10964 ADP-heptose:LPS hepto 50.3 1.5E+02 0.0032 28.0 10.0 79 269-361 178-259 (322)
171 KOG2648 Diphthamide biosynthes 50.2 30 0.00065 34.4 5.1 57 304-361 267-323 (453)
172 PF02698 DUF218: DUF218 domain 49.5 20 0.00042 30.0 3.4 60 284-348 23-82 (155)
173 PRK10494 hypothetical protein; 49.5 33 0.00072 31.8 5.2 52 285-341 107-158 (259)
174 TIGR02706 P_butyryltrans phosp 49.4 1.4E+02 0.003 28.2 9.5 80 284-378 23-109 (294)
175 TIGR00853 pts-lac PTS system, 48.8 52 0.0011 25.4 5.4 56 307-367 7-62 (95)
176 PF00343 Phosphorylase: Carboh 48.4 1.7E+02 0.0037 31.4 10.6 90 269-360 444-547 (713)
177 PRK14089 ipid-A-disaccharide s 48.0 1.1E+02 0.0024 29.7 8.7 113 219-361 125-241 (347)
178 PF12996 DUF3880: DUF based on 47.9 58 0.0013 24.0 5.4 61 218-280 15-78 (79)
179 PRK11890 phosphate acetyltrans 47.5 1.4E+02 0.003 28.6 9.1 81 284-378 32-118 (312)
180 cd06259 YdcF-like YdcF-like. Y 46.9 62 0.0013 26.7 6.1 54 285-343 21-74 (150)
181 PRK14478 nitrogenase molybdenu 46.3 3.3E+02 0.0072 27.6 12.4 90 279-372 164-258 (475)
182 TIGR00322 diphth2_R diphthamid 44.6 49 0.0011 31.9 5.6 57 304-361 233-289 (332)
183 TIGR01426 MGT glycosyltransfer 44.0 1.2E+02 0.0027 29.4 8.6 72 270-363 227-299 (392)
184 cd02168 NMNAT_Nudix Nicotinami 43.7 95 0.0021 27.0 6.9 62 272-342 2-73 (181)
185 COG0058 GlgP Glucan phosphoryl 43.5 98 0.0021 33.2 8.0 93 268-360 486-581 (750)
186 cd04300 GT1_Glycogen_Phosphory 42.8 1.1E+02 0.0023 33.3 8.2 89 268-360 529-633 (797)
187 COG1922 WecG Teichoic acid bio 42.6 2.1E+02 0.0045 26.5 9.1 132 217-368 60-198 (253)
188 cd01968 Nitrogenase_NifE_I Nit 42.3 1.5E+02 0.0033 29.3 9.0 88 281-372 133-225 (410)
189 PF01531 Glyco_transf_11: Glyc 42.2 2.9E+02 0.0063 26.0 10.5 78 284-378 190-268 (298)
190 PRK01713 ornithine carbamoyltr 41.5 3.3E+02 0.0072 26.2 13.8 120 219-361 99-231 (334)
191 TIGR02093 P_ylase glycogen/sta 41.4 74 0.0016 34.4 6.8 89 268-360 526-630 (794)
192 PRK14188 bifunctional 5,10-met 41.0 1.2E+02 0.0026 28.8 7.5 82 285-369 16-106 (296)
193 TIGR00272 DPH2 diphthamide bio 41.0 55 0.0012 33.4 5.6 57 304-361 282-338 (496)
194 TIGR00288 conserved hypothetic 40.9 90 0.002 26.7 6.1 67 282-362 89-155 (160)
195 TIGR01278 DPOR_BchB light-inde 40.9 2.2E+02 0.0048 29.2 10.1 72 304-377 158-230 (511)
196 TIGR01426 MGT glycosyltransfer 40.3 1E+02 0.0022 30.0 7.4 22 53-76 11-32 (392)
197 PF02951 GSH-S_N: Prokaryotic 40.0 44 0.00096 27.0 3.9 37 35-74 1-38 (119)
198 TIGR01501 MthylAspMutase methy 39.9 2.1E+02 0.0045 23.6 8.0 101 246-355 30-130 (134)
199 PRK09590 celB cellobiose phosp 39.0 98 0.0021 24.3 5.6 56 307-367 5-62 (104)
200 PRK09653 eutD phosphotransacet 37.9 2.3E+02 0.005 27.1 9.2 45 284-342 25-70 (324)
201 KOG3339 Predicted glycosyltran 37.7 2.9E+02 0.0062 24.4 10.5 39 24-66 24-66 (211)
202 TIGR01768 GGGP-family geranylg 36.9 1.2E+02 0.0027 27.4 6.6 72 276-360 4-76 (223)
203 COG0796 MurI Glutamate racemas 36.1 2.9E+02 0.0064 25.8 9.1 21 357-377 237-257 (269)
204 COG0036 Rpe Pentose-5-phosphat 35.8 1.6E+02 0.0034 26.7 7.0 72 283-368 72-145 (220)
205 COG3114 CcmD Heme exporter pro 35.8 60 0.0013 23.1 3.4 30 1-30 12-41 (67)
206 PRK14194 bifunctional 5,10-met 35.6 1.5E+02 0.0032 28.3 7.2 68 285-356 18-86 (301)
207 TIGR01527 arch_NMN_Atrans nico 35.5 2.8E+02 0.0062 23.7 8.9 22 273-294 3-25 (165)
208 PRK14171 bifunctional 5,10-met 35.5 1.8E+02 0.0039 27.5 7.7 52 303-356 33-85 (288)
209 PRK14182 bifunctional 5,10-met 35.5 1.3E+02 0.0029 28.2 6.8 53 302-356 30-83 (282)
210 TIGR01862 N2-ase-Ialpha nitrog 34.8 3E+02 0.0065 27.6 9.8 75 281-359 166-242 (443)
211 PRK14189 bifunctional 5,10-met 34.4 1.7E+02 0.0037 27.6 7.4 65 303-369 33-106 (285)
212 PRK14184 bifunctional 5,10-met 34.4 1.8E+02 0.0039 27.5 7.5 65 303-369 32-105 (286)
213 PLN02527 aspartate carbamoyltr 34.1 4.2E+02 0.009 25.2 13.5 122 218-363 93-226 (306)
214 PF14639 YqgF: Holliday-juncti 34.0 81 0.0017 26.6 4.7 78 276-360 40-119 (150)
215 TIGR00433 bioB biotin syntheta 34.0 2.6E+02 0.0057 25.9 8.9 78 280-361 60-139 (296)
216 COG1440 CelA Phosphotransferas 34.0 1.4E+02 0.0031 23.4 5.6 58 304-367 3-60 (102)
217 PRK14986 glycogen phosphorylas 33.7 1.5E+02 0.0033 32.2 7.6 89 268-360 542-646 (815)
218 PF13788 DUF4180: Domain of un 33.7 1.7E+02 0.0036 23.5 6.2 39 303-344 68-106 (113)
219 PRK14193 bifunctional 5,10-met 33.7 1.6E+02 0.0034 27.8 7.0 52 303-356 33-85 (284)
220 cd01971 Nitrogenase_VnfN_like 33.6 2.3E+02 0.0051 28.2 8.8 91 280-372 131-227 (427)
221 PRK14170 bifunctional 5,10-met 33.4 1.5E+02 0.0033 27.9 6.9 52 303-356 32-84 (284)
222 TIGR01284 alt_nitrog_alph nitr 33.3 2.9E+02 0.0062 27.9 9.4 93 280-377 173-267 (457)
223 PRK05331 putative phosphate ac 33.2 4.5E+02 0.0098 25.3 11.0 87 275-376 6-114 (334)
224 PF02302 PTS_IIB: PTS system, 33.1 1.3E+02 0.0028 22.3 5.4 56 307-367 3-59 (90)
225 PRK14169 bifunctional 5,10-met 32.9 1.8E+02 0.0038 27.4 7.2 65 303-369 31-104 (282)
226 PRK14190 bifunctional 5,10-met 32.8 1.7E+02 0.0036 27.6 7.0 52 303-356 33-85 (284)
227 cd01080 NAD_bind_m-THF_DH_Cycl 32.5 2.1E+02 0.0046 24.5 7.2 54 302-364 42-96 (168)
228 cd02166 NMNAT_Archaea Nicotina 32.3 2.4E+02 0.0053 23.9 7.5 23 272-294 2-25 (163)
229 KOG1050 Trehalose-6-phosphate 32.2 2.3E+02 0.005 30.5 8.7 99 268-367 275-385 (732)
230 PRK15395 methyl-galactoside AB 31.9 1.3E+02 0.0029 28.5 6.5 58 11-75 6-63 (330)
231 PF01866 Diphthamide_syn: Puta 31.7 49 0.0011 31.4 3.4 57 304-361 210-266 (307)
232 PRK14166 bifunctional 5,10-met 31.4 1.8E+02 0.0039 27.4 7.0 52 303-356 31-83 (282)
233 PRK14177 bifunctional 5,10-met 30.7 2E+02 0.0043 27.1 7.2 69 285-356 17-86 (284)
234 PRK02255 putrescine carbamoylt 30.7 4.1E+02 0.0088 25.7 9.5 80 268-365 153-233 (338)
235 PRK14173 bifunctional 5,10-met 30.6 1.3E+02 0.0027 28.5 5.8 51 303-355 30-81 (287)
236 PRK14167 bifunctional 5,10-met 30.6 1.8E+02 0.0039 27.6 6.9 52 303-356 32-84 (297)
237 PRK14180 bifunctional 5,10-met 30.6 1.9E+02 0.0041 27.2 7.0 65 303-369 32-105 (282)
238 PLN02616 tetrahydrofolate dehy 30.6 2.1E+02 0.0046 27.9 7.5 68 285-355 87-155 (364)
239 PHA03392 egt ecdysteroid UDP-g 30.5 1.2E+02 0.0027 31.0 6.3 37 36-76 22-58 (507)
240 PRK05805 phosphate butyryltran 30.2 2.5E+02 0.0055 26.6 8.0 79 284-377 27-112 (301)
241 PRK14183 bifunctional 5,10-met 30.1 2E+02 0.0042 27.1 7.0 52 303-356 32-84 (281)
242 PRK13793 nicotinamide-nucleoti 29.8 1.1E+02 0.0024 27.1 5.0 36 270-313 5-41 (196)
243 PF14237 DUF4339: Domain of un 29.7 20 0.00043 23.4 0.2 30 341-370 11-42 (45)
244 PF00148 Oxidored_nitro: Nitro 29.6 2.8E+02 0.0061 27.1 8.6 88 281-372 121-212 (398)
245 PLN02516 methylenetetrahydrofo 29.4 2.4E+02 0.0053 26.8 7.5 52 303-356 40-92 (299)
246 cd01972 Nitrogenase_VnfE_like 29.4 3.1E+02 0.0068 27.3 8.9 95 280-377 136-234 (426)
247 PF03358 FMN_red: NADPH-depend 29.0 90 0.0019 25.7 4.3 80 271-368 3-83 (152)
248 PRK14187 bifunctional 5,10-met 28.8 2.6E+02 0.0056 26.5 7.6 65 303-369 33-106 (294)
249 PRK09271 flavodoxin; Provision 28.8 96 0.0021 26.2 4.4 35 35-73 1-35 (160)
250 COG3980 spsG Spore coat polysa 28.5 1.1E+02 0.0024 28.9 4.9 76 268-362 158-234 (318)
251 PRK08099 bifunctional DNA-bind 28.5 5.9E+02 0.013 25.2 10.9 23 271-293 54-77 (399)
252 KOG1838 Alpha/beta hydrolase [ 28.1 1.1E+02 0.0025 30.3 5.2 41 33-76 123-163 (409)
253 PRK14175 bifunctional 5,10-met 28.0 2.2E+02 0.0047 26.9 6.9 52 303-356 33-85 (286)
254 PRK14174 bifunctional 5,10-met 27.8 2.4E+02 0.0052 26.7 7.2 66 303-370 32-106 (295)
255 cd03146 GAT1_Peptidase_E Type 27.7 4.3E+02 0.0093 23.4 10.5 67 303-373 30-97 (212)
256 PLN02897 tetrahydrofolate dehy 27.7 2.2E+02 0.0047 27.7 6.9 70 284-356 69-139 (345)
257 PRK14186 bifunctional 5,10-met 27.6 2.5E+02 0.0054 26.6 7.3 52 303-356 33-85 (297)
258 PRK14985 maltodextrin phosphor 27.4 1.2E+02 0.0025 32.9 5.5 88 269-360 529-632 (798)
259 PF03358 FMN_red: NADPH-depend 27.3 1.2E+02 0.0026 24.9 4.8 38 35-74 1-38 (152)
260 PF10087 DUF2325: Uncharacteri 27.2 2.3E+02 0.0049 21.6 5.9 11 340-350 55-65 (97)
261 PF05141 DIT1_PvcA: Pyoverdine 27.1 62 0.0014 30.4 3.1 40 303-343 58-106 (278)
262 PF05185 PRMT5: PRMT5 arginine 26.8 94 0.002 31.4 4.6 44 323-369 228-272 (448)
263 PRK14179 bifunctional 5,10-met 26.6 2.8E+02 0.006 26.2 7.4 52 303-356 33-85 (284)
264 CHL00076 chlB photochlorophyll 26.5 1.5E+02 0.0033 30.4 6.2 71 305-377 164-235 (513)
265 PF06180 CbiK: Cobalt chelatas 26.1 2.4E+02 0.0053 26.2 6.9 87 280-369 120-211 (262)
266 PF07172 GRP: Glycine rich pro 25.9 68 0.0015 24.9 2.7 20 11-30 8-27 (95)
267 PRK01153 nicotinamide-nucleoti 25.9 3.4E+02 0.0075 23.3 7.4 22 272-293 3-25 (174)
268 cd01840 SGNH_hydrolase_yrhL_li 25.5 3.8E+02 0.0082 21.9 7.6 22 321-342 65-86 (150)
269 PRK14176 bifunctional 5,10-met 25.5 3.4E+02 0.0074 25.6 7.7 52 303-356 39-91 (287)
270 PRK10916 ADP-heptose:LPS hepto 25.4 5.9E+02 0.013 24.2 11.5 81 269-361 180-267 (348)
271 PRK13602 putative ribosomal pr 25.2 2.9E+02 0.0063 20.5 7.0 55 283-353 15-69 (82)
272 PRK10653 D-ribose transporter 25.2 2.9E+02 0.0063 25.4 7.4 58 14-75 7-64 (295)
273 PF01102 Glycophorin_A: Glycop 25.0 1E+02 0.0022 25.1 3.6 20 7-26 69-88 (122)
274 PRK14178 bifunctional 5,10-met 25.0 2E+02 0.0042 27.1 6.0 52 303-356 27-79 (279)
275 PRK14191 bifunctional 5,10-met 24.8 3E+02 0.0065 26.0 7.2 52 303-356 32-84 (285)
276 TIGR00658 orni_carb_tr ornithi 24.5 6.1E+02 0.013 24.0 10.8 79 268-364 147-226 (304)
277 cd01976 Nitrogenase_MoFe_alpha 24.5 5.9E+02 0.013 25.3 9.8 77 281-361 147-226 (421)
278 PRK04284 ornithine carbamoyltr 24.4 6.4E+02 0.014 24.3 13.1 122 219-363 98-233 (332)
279 PRK12562 ornithine carbamoyltr 24.4 6.5E+02 0.014 24.3 10.6 79 268-363 155-234 (334)
280 PRK14185 bifunctional 5,10-met 24.3 2.7E+02 0.0059 26.4 6.9 52 303-356 32-84 (293)
281 PF13167 GTP-bdg_N: GTP-bindin 24.2 3.4E+02 0.0074 21.0 7.6 72 281-361 3-84 (95)
282 PHA03392 egt ecdysteroid UDP-g 23.3 3.1E+02 0.0067 28.1 7.7 67 269-361 297-370 (507)
283 PF01784 NIF3: NIF3 (NGG1p int 23.0 3.3E+02 0.0071 24.7 7.1 93 270-377 130-237 (241)
284 PRK10792 bifunctional 5,10-met 23.0 3.1E+02 0.0067 25.9 7.0 52 303-356 34-86 (285)
285 COG1646 Predicted phosphate-bi 23.0 3.9E+02 0.0086 24.4 7.2 77 272-362 16-94 (240)
286 TIGR02014 BchZ chlorophyllide 22.9 4.5E+02 0.0097 26.7 8.6 68 304-373 152-220 (468)
287 TIGR01319 glmL_fam conserved h 22.8 1.9E+02 0.0042 29.2 5.8 23 271-294 123-145 (463)
288 PF01515 PTA_PTB: Phosphate ac 22.8 3.3E+02 0.0071 26.1 7.3 38 284-335 24-61 (319)
289 PF01113 DapB_N: Dihydrodipico 22.7 2.6E+02 0.0057 22.4 5.8 32 347-378 59-91 (124)
290 PRK06756 flavodoxin; Provision 22.7 1.5E+02 0.0033 24.4 4.5 36 34-73 1-36 (148)
291 PRK11914 diacylglycerol kinase 22.6 2E+02 0.0043 27.1 5.8 43 29-74 3-46 (306)
292 cd01973 Nitrogenase_VFe_beta_l 22.6 3.7E+02 0.0081 27.1 8.0 56 279-340 139-195 (454)
293 cd05022 S-100A13 S-100A13: S-1 22.5 1.6E+02 0.0035 22.3 4.2 68 281-374 4-73 (89)
294 TIGR01860 VNFD nitrogenase van 22.5 6.1E+02 0.013 25.6 9.5 73 282-358 177-251 (461)
295 COG3562 KpsS Capsule polysacch 22.5 2.9E+02 0.0063 26.8 6.6 51 303-356 269-319 (403)
296 COG4822 CbiK Cobalamin biosynt 22.4 5.9E+02 0.013 23.1 8.9 88 282-372 118-210 (265)
297 PF03033 Glyco_transf_28: Glyc 22.3 93 0.002 24.9 3.1 26 49-76 10-35 (139)
298 PRK10076 pyruvate formate lyas 22.2 2.7E+02 0.0058 24.9 6.2 57 306-363 41-97 (213)
299 COG1707 ACT domain-containing 22.2 2.2E+02 0.0047 24.6 5.1 59 280-352 125-186 (218)
300 COG0716 FldA Flavodoxins [Ener 22.0 1.4E+02 0.003 24.8 4.1 35 34-72 1-35 (151)
301 TIGR01283 nifE nitrogenase mol 22.0 4.7E+02 0.01 26.3 8.7 88 280-371 167-263 (456)
302 TIGR02069 cyanophycinase cyano 22.0 6.2E+02 0.013 23.2 10.8 81 286-374 15-100 (250)
303 PRK14172 bifunctional 5,10-met 21.9 3.4E+02 0.0073 25.5 6.9 65 303-369 33-106 (278)
304 PRK00207 sulfur transfer compl 21.8 1.9E+02 0.0041 23.6 4.7 33 35-67 1-33 (128)
305 PF13344 Hydrolase_6: Haloacid 21.7 2.3E+02 0.005 21.8 5.1 40 55-97 20-59 (101)
306 PRK08883 ribulose-phosphate 3- 21.6 4.7E+02 0.01 23.5 7.7 53 322-374 95-150 (220)
307 PF11997 DUF3492: Domain of un 21.4 1.7E+02 0.0036 27.3 4.9 55 35-100 1-57 (268)
308 PF08496 Peptidase_S49_N: Pept 21.3 1.4E+02 0.0029 25.5 3.9 32 3-34 6-37 (155)
309 cd01982 Chlide_reductase_Z Chl 21.2 4.9E+02 0.011 26.0 8.3 66 305-373 156-223 (412)
310 TIGR03457 sulphoacet_xsc sulfo 21.2 3.8E+02 0.0083 27.8 8.0 56 304-361 197-268 (579)
311 COG0519 GuaA GMP synthase, PP- 21.0 1.2E+02 0.0027 28.4 3.7 37 321-358 170-219 (315)
312 PLN02476 O-methyltransferase 21.0 3.7E+02 0.0081 25.2 7.1 60 319-379 153-219 (278)
313 PRK14181 bifunctional 5,10-met 20.8 2.4E+02 0.0052 26.6 5.7 52 303-356 27-79 (287)
314 TIGR03393 indolpyr_decarb indo 20.8 3E+02 0.0064 28.3 7.0 57 305-363 207-280 (539)
315 COG2102 Predicted ATPases of P 20.4 6E+02 0.013 23.0 7.8 73 271-356 62-134 (223)
316 TIGR00333 nrdI ribonucleoside- 20.2 4.8E+02 0.01 21.2 8.0 52 304-355 63-114 (125)
317 KOG4626 O-linked N-acetylgluco 20.1 5.7E+02 0.012 27.2 8.5 80 270-358 758-838 (966)
318 TIGR01087 murD UDP-N-acetylmur 20.1 6.1E+02 0.013 25.0 9.0 81 269-370 332-417 (433)
319 PF04995 CcmD: Heme exporter p 20.1 1.7E+02 0.0036 19.2 3.3 18 3-20 2-19 (46)
320 PLN02589 caffeoyl-CoA O-methyl 20.1 4E+02 0.0086 24.5 7.0 72 303-379 103-181 (247)
No 1
>PLN02949 transferase, transferring glycosyl groups
Probab=100.00 E-value=1.4e-53 Score=425.46 Aligned_cols=348 Identities=74% Similarity=1.252 Sum_probs=306.5
Q ss_pred HHhHhhhcCCCCcEEEEECCCCCCCCChhHHHHHHHHHHHHhCCCceEEEEcCCCCCChhhHHHHHHhhcCccccCCCeE
Q 016925 23 ASHVHNARRNRTTSVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYTGDHDAFPDSLLARAVDRFGVELLHPPKV 102 (380)
Q Consensus 23 ~~~~~~~~~~~~~~I~~~~p~~~~~GG~ervl~~la~~L~~~g~~~~v~v~t~~~~~~~~~~~~~~~~~~g~~l~~~v~~ 102 (380)
+-.++-+|++++++|+|+||+++.|||+||++|+.+.+|++.|++++|+++|+++|..+++++..+.++|+++++..+.+
T Consensus 22 ~~~~~~~~~~~~~~v~f~HP~~~~ggG~ERvl~~a~~~l~~~~~~~~v~iyt~~~d~~~~~~l~~~~~~~~i~~~~~~~~ 101 (463)
T PLN02949 22 ALSVLRARRSRKRAVGFFHPYTNDGGGGERVLWCAVRAIQEENPDLDCVIYTGDHDASPDSLAARARDRFGVELLSPPKV 101 (463)
T ss_pred HHHHHhcccCCCcEEEEECCCCCCCCChhhHHHHHHHHHHhhCCCCeEEEEcCCCCCCHHHHHHHHHhhcceecCCCceE
Confidence 34578899999999999999999999999999999999999998889999999988777777777777899988877788
Q ss_pred EEeccccccccCCCCccceehhhHhHHHHHHHHHHhcCCcEEEeCCCchhhHHHHhHhCCcEEEEEeCCcchhhHHHhhh
Q 016925 103 VHLYRRKWIEESTYPRFTMIGQSFGSVYLSWEALCKFTPLYYFDTSGYAFTYPLARIFGCRVICYTHYPTISLDMISRVR 182 (380)
Q Consensus 103 v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~pDi~~~~~~~~~~~~l~~~~~~p~v~~~H~p~~~~~~~~~~~ 182 (380)
++++.+.+++++.|++++++++.++.++++++++.+..||+++|+.++++++|+++..++|+++|||+|+.+.||+..++
T Consensus 102 v~l~~~~~~~~~~~~~~t~~~~~~~~~~l~~~~~~~~~p~v~vDt~~~~~~~pl~~~~~~~v~~yvH~p~~~~dm~~~v~ 181 (463)
T PLN02949 102 VHLRKRKWIEEETYPRFTMIGQSLGSVYLAWEALCKFTPLYFFDTSGYAFTYPLARLFGCKVVCYTHYPTISSDMISRVR 181 (463)
T ss_pred EEeccccccccccCCceehHHHHHHHHHHHHHHHHhcCCCEEEeCCCcccHHHHHHhcCCcEEEEEeCCcchHHHHHHHh
Confidence 88877789999999999999999999999999888888999999999999999888778999999999999999999999
Q ss_pred ccccccCCCccccccchhhhhHHHHHHHHHHHHHHHhcCCCEEEEcCHHHHHHHHHHhCCCCceEEecCCCCCCCCCCCC
Q 016925 183 EGSSMYNNNASIAQSNWLSQCKIVYYTFFSWMYGLVGSCADLAMVNSSWTQSHIEKLWGIPDRIKRVYPPCDTSGLQVLP 262 (380)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ad~ii~~S~~~~~~i~~~~~~~~k~~vi~~gvd~~~~~~~~ 262 (380)
++...|++.++++.+.+....|.+|++.+.++++...+.||.|+|||+++++.+++.++.+.++.++|||+|.+.+...+
T Consensus 182 ~~~~~~~~~~~~a~~~~~~~~k~~Y~~~~~~l~~~~~~~ad~ii~nS~~t~~~l~~~~~~~~~i~vvyp~vd~~~~~~~~ 261 (463)
T PLN02949 182 DRSSMYNNDASIARSFWLSTCKILYYRAFAWMYGLVGRCAHLAMVNSSWTKSHIEALWRIPERIKRVYPPCDTSGLQALP 261 (463)
T ss_pred hcccccCccchhhccchhHHHHHHHHHHHHHHHHHHcCCCCEEEECCHHHHHHHHHHcCCCCCeEEEcCCCCHHHcccCC
Confidence 99999999888888777788899999999999999999999999999999999999887656788999999976553322
Q ss_pred CCCCCCCCEEEEEecCCCccChHHHHHHHHHHHHHccCCCCCCeEEEEcCCCCCCCHHHHHHHHHHHHhcCCCCcEEEcc
Q 016925 263 LERSTEYPAIISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYK 342 (380)
Q Consensus 263 ~~~~~~~~~il~VGRl~p~K~~d~li~A~~~l~~~~~~~~~~~~LvIvG~g~~~~~~~~~~~L~~la~~lgl~~~V~f~G 342 (380)
.....++++++++||++|+||++.+|+||+.+.++..+..|+++|+|+|+++..++.++.++|+++++++|++++|+|+|
T Consensus 262 ~~~~~~~~~il~vGR~~~~Kg~~llI~A~~~l~~~~~~~~~~~~LvIvG~~~~~~~~~~~~eL~~la~~l~L~~~V~f~g 341 (463)
T PLN02949 262 LERSEDPPYIISVAQFRPEKAHALQLEAFALALEKLDADVPRPKLQFVGSCRNKEDEERLQKLKDRAKELGLDGDVEFHK 341 (463)
T ss_pred ccccCCCCEEEEEEeeeccCCHHHHHHHHHHHHHhccccCCCcEEEEEeCCCCcccHHHHHHHHHHHHHcCCCCcEEEeC
Confidence 22223457999999999999999999999998764322347899999999866566778899999999999999999999
Q ss_pred CCCHHHHHHHHhhccEEEe-echhhHHHH
Q 016925 343 NLLYRSVLTIFMHLFVFTM-KWQLVYDEF 370 (380)
Q Consensus 343 ~v~~~el~~ly~~a~vf~~-~~~~~~~~~ 370 (380)
+++++++.++|++|++++. +|.|+||-=
T Consensus 342 ~v~~~el~~ll~~a~~~v~~s~~E~FGiv 370 (463)
T PLN02949 342 NVSYRDLVRLLGGAVAGLHSMIDEHFGIS 370 (463)
T ss_pred CCCHHHHHHHHHhCcEEEeCCccCCCChH
Confidence 9999999999999999986 689999953
No 2
>KOG1387 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=100.00 E-value=1.2e-51 Score=376.53 Aligned_cols=352 Identities=36% Similarity=0.649 Sum_probs=304.3
Q ss_pred HHHHHHHHHHHH------HHHhHhhhcCCCCcEEEEECCCCCCCCChhHHHHHHHHHHHHhCCCceEEEEcCCCCCChhh
Q 016925 10 AVITAVLASILI------LASHVHNARRNRTTSVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYTGDHDAFPDS 83 (380)
Q Consensus 10 ~~~~~~~~~~~~------~~~~~~~~~~~~~~~I~~~~p~~~~~GG~ervl~~la~~L~~~g~~~~v~v~t~~~~~~~~~ 83 (380)
..|++|+..+.+ =+|-.|.+ +.+.+.++||||+++.|||+|||+|...+.+|++.+++.++|||++.+..|++
T Consensus 14 ~~l~~v~~l~~l~~~l~~k~sl~~~~-~k~~ktvgfFHPYCNAGGGGErVLW~Avr~~q~k~~n~~~viYsGD~n~t~~~ 92 (465)
T KOG1387|consen 14 SSLVLVYGLIKLLTWLFKKSSLLNRA-EKNVKTVGFFHPYCNAGGGGERVLWKAVRITQRKFPNNVIVIYSGDFNVTPEN 92 (465)
T ss_pred HHHHHHHHHHHHHHHHhhhHHhhhhh-hhhceEEEEecccccCCCCcceehhHHHHHHHHhCCCceEEEEeCCCCCCHHH
Confidence 345555544433 25666666 55678999999999999999999999999999999999999999998888999
Q ss_pred HHHHHHhhcCcccc-CCCeEEEeccccccccCCCCccceehhhHhHHHHHHHHHHhcCCcEEEeCCCchhhHHHH-hHhC
Q 016925 84 LLARAVDRFGVELL-HPPKVVHLYRRKWIEESTYPRFTMIGQSFGSVYLSWEALCKFTPLYYFDTSGYAFTYPLA-RIFG 161 (380)
Q Consensus 84 ~~~~~~~~~g~~l~-~~v~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~pDi~~~~~~~~~~~~l~-~~~~ 161 (380)
+++.+++.|+++++ +++.+++++.+.+++.+.|+.++++.++++++.++++++.++.|||++|++|+++++|+. ++.+
T Consensus 93 IL~k~k~~F~idlDs~nI~Fi~Lk~R~lVea~~~~hfTllgQaigsmIl~~Eai~r~~Pdi~IDtMGY~fs~p~~r~l~~ 172 (465)
T KOG1387|consen 93 ILNKVKNKFDIDLDSDNIFFIYLKLRYLVEASTWKHFTLLGQAIGSMILAFEAIIRFPPDIFIDTMGYPFSYPIFRRLRR 172 (465)
T ss_pred HHHHHHHhcCceecccceEEEEEEeeeeeecccccceehHHHHHHHHHHHHHHHHhCCchheEecCCCcchhHHHHHHcc
Confidence 99999999999988 457899999999999999999999999999999999999999999999999999999954 5789
Q ss_pred CcEEEEEeCCcchhhHHHhhhccccccCCCccccccchhhhhHHHHHHHHHHHHHHHhcCCCEEEEcCHHHHHHHHHHhC
Q 016925 162 CRVICYTHYPTISLDMISRVREGSSMYNNNASIAQSNWLSQCKIVYYTFFSWMYGLVGSCADLAMVNSSWTQSHIEKLWG 241 (380)
Q Consensus 162 ~p~v~~~H~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ad~ii~~S~~~~~~i~~~~~ 241 (380)
+|+++|+|+|.+++||++.+..|.. +++..|.|..||++|..+++.++..||.++|||++|...|.+.|+
T Consensus 173 ~~V~aYvHYP~iS~DML~~l~qrq~----------s~~l~~~KlaY~rlFa~lY~~~G~~ad~vm~NssWT~nHI~qiW~ 242 (465)
T KOG1387|consen 173 IPVVAYVHYPTISTDMLKKLFQRQK----------SGILVWGKLAYWRLFALLYQSAGSKADIVMTNSSWTNNHIKQIWQ 242 (465)
T ss_pred CceEEEEecccccHHHHHHHHhhhh----------cchhhhHHHHHHHHHHHHHHhccccceEEEecchhhHHHHHHHhh
Confidence 9999999999999999998887531 235788899999999999999999999999999999999999998
Q ss_pred CCCceEEecCCCCCCCCCCCCCCCCCCCCEEEEEecCCCccChHHHHHHHHHHHHHcc--CCCCCCeEEEEcCCCCCCCH
Q 016925 242 IPDRIKRVYPPCDTSGLQVLPLERSTEYPAIISVAQFRPEKAHPLQLEAFSVALRKLD--ADLPRPRLQFVGSCRNKSDE 319 (380)
Q Consensus 242 ~~~k~~vi~~gvd~~~~~~~~~~~~~~~~~il~VGRl~p~K~~d~li~A~~~l~~~~~--~~~~~~~LvIvG~g~~~~~~ 319 (380)
. ....+||||++++........+..+.+.+++||.++|+||+. +|+.++...++.+ +..++++|+|+|+++.++++
T Consensus 243 ~-~~~~iVyPPC~~e~lks~~~te~~r~~~ll~l~Q~RPEKnH~-~Lql~Al~~~~~pl~a~~~~iKL~ivGScRneeD~ 320 (465)
T KOG1387|consen 243 S-NTCSIVYPPCSTEDLKSKFGTEGERENQLLSLAQFRPEKNHK-ILQLFALYLKNEPLEASVSPIKLIIVGSCRNEEDE 320 (465)
T ss_pred c-cceeEEcCCCCHHHHHHHhcccCCcceEEEEEeecCcccccH-HHHHHHHHHhcCchhhccCCceEEEEeccCChhhH
Confidence 6 577899999998866543211234578999999999999999 6777776555542 23467999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCcEEEccCCCHHHHHHHHhhccEEE-eechhhHHHHHHHH
Q 016925 320 ERLQSLKDKSIELKVDGNVEFYKNLLYRSVLTIFMHLFVFT-MKWQLVYDEFLKLY 374 (380)
Q Consensus 320 ~~~~~L~~la~~lgl~~~V~f~G~v~~~el~~ly~~a~vf~-~~~~~~~~~~~~~~ 374 (380)
++...|++++++|+++++|.|.-++|.+++..+|+.|.+.+ --|.||||==.-.|
T Consensus 321 ervk~Lkd~a~~L~i~~~v~F~~N~Py~~lv~lL~~a~iGvh~MwNEHFGIsVVEy 376 (465)
T KOG1387|consen 321 ERVKSLKDLAEELKIPKHVQFEKNVPYEKLVELLGKATIGVHTMWNEHFGISVVEY 376 (465)
T ss_pred HHHHHHHHHHHhcCCccceEEEecCCHHHHHHHhccceeehhhhhhhhcchhHHHH
Confidence 99999999999999999999999999999999999999977 48999999544444
No 3
>cd03806 GT1_ALG11_like This family is most closely related to the GT1 family of glycosyltransferases. ALG11 in yeast is involved in adding the final 1,2-linked Man to the Man5GlcNAc2-PP-Dol synthesized on the cytosolic face of the ER. The deletion analysis of ALG11 was shown to block the early steps of core biosynthesis that takes place on the cytoplasmic face of the ER and lead to a defect in the assembly of lipid-linked oligosaccharides.
Probab=100.00 E-value=2.2e-46 Score=371.62 Aligned_cols=337 Identities=47% Similarity=0.820 Sum_probs=285.0
Q ss_pred cEEEEECCCCCCCCChhHHHHHHHHHHHHhCCCceEEEEcCCCCCChhhHHHHHHhhcCccccCCCeEEEec-ccccccc
Q 016925 35 TSVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYTGDHDAFPDSLLARAVDRFGVELLHPPKVVHLY-RRKWIEE 113 (380)
Q Consensus 35 ~~I~~~~p~~~~~GG~ervl~~la~~L~~~g~~~~v~v~t~~~~~~~~~~~~~~~~~~g~~l~~~v~~v~l~-~~~~~~~ 113 (380)
+.|+|+||+++.|||+||++|+.+.+|++.+++++|+|+|++.+...+.+++..++.|++++.++++++.+. ...+.+.
T Consensus 1 ~~~~f~hp~~~~ggg~ervl~~a~~~l~~~~~~~~v~i~t~~~~~~~~~~l~~~~~~f~~~~~~~~~~~~~~~~~~~~~~ 80 (419)
T cd03806 1 NTVGFFHPYCNAGGGGERVLWCAVRALQKRYPNNIVVIYTGDLDATPEEILEKVESRFNIELDRPRIVFFLLKYRKLVEA 80 (419)
T ss_pred CeEEEECCCCCCCCCchHHHHHHHHHHHHhCCCcEEEEECCCCCCCHHHHHHHHHHhcCeecCCCceEEEEecceeeecc
Confidence 368999999999999999999999999999888999999998876555667777788999888888877764 4567777
Q ss_pred CCCCccceehhhHhHHHHHHHHHHhcCCcEEEeCCCchhhHHHHh-HhCCcEEEEEeCCcchhhHHHhhhccccccCCCc
Q 016925 114 STYPRFTMIGQSFGSVYLSWEALCKFTPLYYFDTSGYAFTYPLAR-IFGCRVICYTHYPTISLDMISRVREGSSMYNNNA 192 (380)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~l~~~~pDi~~~~~~~~~~~~l~~-~~~~p~v~~~H~p~~~~~~~~~~~~~~~~~~~~~ 192 (380)
+.|+++++..+.+..+...++.+.+.+||+++++.+.++++|+++ ..++|+++|+|+|....|++..++.+...|+|..
T Consensus 81 ~~~~r~~~~~~~~~~~~~~~~~~~~~~pDv~i~~~g~~~~~~~~~~~~~~~~i~y~h~P~~~~d~l~~~~~~~~~~~~~~ 160 (419)
T cd03806 81 STYPRFTLLGQALGSMILGLEALLKLVPDIFIDTMGYPFTYPLVRLLGGCPVGAYVHYPTISTDMLQKVRSREASYNNSA 160 (419)
T ss_pred ccCCceeeHHHHHHHHHHHHHHHHhcCCCEEEEcCCcccHHHHHHHhcCCeEEEEecCCcchHHHHHHHhhccccccCcc
Confidence 888998888888877777777776778999999988888888765 4688999999999888899888888888898888
Q ss_pred cccccchhhhhHHHHHHHHHHHHHHHhcCCCEEEEcCHHHHHHHHHHhCCCCceEEecCCCCCCCCCCCCCCCCCCCCEE
Q 016925 193 SIAQSNWLSQCKIVYYTFFSWMYGLVGSCADLAMVNSSWTQSHIEKLWGIPDRIKRVYPPCDTSGLQVLPLERSTEYPAI 272 (380)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ad~ii~~S~~~~~~i~~~~~~~~k~~vi~~gvd~~~~~~~~~~~~~~~~~i 272 (380)
+++++.+....|.+||++|.+++++..+.||.++|||+++++.+.+.++..+++.|||||+|++.+.+.+.....+++.|
T Consensus 161 ~~~~~~~~~~~k~~y~~~~~~~~~~~~~~aD~ii~~S~~~~~~~~~~~~~~~~~~vi~~gvd~~~~~~~~~~~~~~~~~i 240 (419)
T cd03806 161 TIARSPVLSKAKLLYYRLFAFLYGLAGSFADVVMVNSTWTRNHIRSLWKRNTKPSIVYPPCDVEELLKLPLDEKTRENQI 240 (419)
T ss_pred chhccchHHHHHHHHHHHHHHHHHHHhhcCCEEEECCHHHHHHHHHHhCcCCCcEEEcCCCCHHHhcccccccccCCcEE
Confidence 88887766788999999999999999999999999999999999998875457899999999876654322112345799
Q ss_pred EEEecCCCccChHHHHHHHHHHHHHccC-CCCCCeEEEEcCCCCCCCHHHHHHHHHHHHhcCCCCcEEEccCCCHHHHHH
Q 016925 273 ISVAQFRPEKAHPLQLEAFSVALRKLDA-DLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRSVLT 351 (380)
Q Consensus 273 l~VGRl~p~K~~d~li~A~~~l~~~~~~-~~~~~~LvIvG~g~~~~~~~~~~~L~~la~~lgl~~~V~f~G~v~~~el~~ 351 (380)
+|+||++|+||++.+|+||+.+.+..++ ..++++|+|+|+++..++.++.++|++++++++++++|+|+|+++++++..
T Consensus 241 l~vgr~~~~K~~~~li~A~~~l~~~~~~~~~~~~~lvivG~~~~~~~~~~~~~L~~~~~~l~l~~~V~f~g~v~~~~l~~ 320 (419)
T cd03806 241 LSIAQFRPEKNHPLQLRAFAKLLKRLPEEIKEKIKLVLIGSCRNEDDEKRVEDLKLLAKELGLEDKVEFVVNAPFEELLE 320 (419)
T ss_pred EEEEeecCCCCHHHHHHHHHHHHHhCcccccCceEEEEEcCCCCcccHHHHHHHHHHHHHhCCCCeEEEecCCCHHHHHH
Confidence 9999999999999999999999876410 013599999999866566678899999999999999999999999999999
Q ss_pred HHhhccEEEe-echhhHHHHH
Q 016925 352 IFMHLFVFTM-KWQLVYDEFL 371 (380)
Q Consensus 352 ly~~a~vf~~-~~~~~~~~~~ 371 (380)
+|+.||+++. ++.|+||-=+
T Consensus 321 ~l~~adv~v~~s~~E~Fgi~~ 341 (419)
T cd03806 321 ELSTASIGLHTMWNEHFGIGV 341 (419)
T ss_pred HHHhCeEEEECCccCCcccHH
Confidence 9999999886 6789999443
No 4
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=99.96 E-value=6.6e-27 Score=229.43 Aligned_cols=298 Identities=23% Similarity=0.342 Sum_probs=195.9
Q ss_pred cEEEEECCCCCCCCChhHHHHHHHHHHHHhCCCceEEEEcCCCCCChhhHHHHHHhhcCccccCCCeEEEeccccccccC
Q 016925 35 TSVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYTGDHDAFPDSLLARAVDRFGVELLHPPKVVHLYRRKWIEES 114 (380)
Q Consensus 35 ~~I~~~~p~~~~~GG~ervl~~la~~L~~~g~~~~v~v~t~~~~~~~~~~~~~~~~~~g~~l~~~v~~v~l~~~~~~~~~ 114 (380)
|||+|+||++. .||+|+++++++++|.++| |+|+++|...+. .....+..+ + .+.+...+. +.+..
T Consensus 1 mkIl~~~~~~~-~gG~e~~~~~la~~L~~~G--~~V~v~~~~~~~--~~~~~~~~~--~-----~~~i~~~~~--~~~~~ 66 (392)
T cd03805 1 LRVAFIHPDLG-IGGAERLVVDAALALQSRG--HEVTIYTSHHDP--SHCFEETKD--G-----TLPVRVRGD--WLPRS 66 (392)
T ss_pred CeEEEECCCCC-CchHHHHHHHHHHHHHhCC--CeEEEEcCCCCc--hhcchhccC--C-----eeEEEEEeE--EEcch
Confidence 79999999986 5899999999999999999 788888864321 111111110 1 011221111 01111
Q ss_pred CCCccceehhhHhHHHHHHH--HHHhcCCcEEEeCCCchhhHHHHh-HhCCcEEEEEeCCcchhhHHHhhhccccccCCC
Q 016925 115 TYPRFTMIGQSFGSVYLSWE--ALCKFTPLYYFDTSGYAFTYPLAR-IFGCRVICYTHYPTISLDMISRVREGSSMYNNN 191 (380)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~--~l~~~~pDi~~~~~~~~~~~~l~~-~~~~p~v~~~H~p~~~~~~~~~~~~~~~~~~~~ 191 (380)
.+..+..+...+........ .....++|+++.+.... ..++.. ..+.|+++++|+|....+ .
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvi~~~~~~~-~~~~~~~~~~~~~i~~~h~~~~~~~------~-------- 131 (392)
T cd03805 67 IFGRFHILCAYLRMLYLALYLLLLPDEKYDVFIVDQVSA-CVPLLKLFSPSKILFYCHFPDQLLA------Q-------- 131 (392)
T ss_pred hhHhHHHHHHHHHHHHHHHHHHhcccCCCCEEEEcCcch-HHHHHHHhcCCcEEEEEecChHHhc------C--------
Confidence 11111001111111111111 23456899876443222 233323 234789999997653100 0
Q ss_pred ccccccchhhhhHHHHHHHHHHHHHHHhcCCCEEEEcCHHHHHHHHHHhCC-CC-ceEEecCCCCCCCCCCCCCC-----
Q 016925 192 ASIAQSNWLSQCKIVYYTFFSWMYGLVGSCADLAMVNSSWTQSHIEKLWGI-PD-RIKRVYPPCDTSGLQVLPLE----- 264 (380)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ad~ii~~S~~~~~~i~~~~~~-~~-k~~vi~~gvd~~~~~~~~~~----- 264 (380)
. ..+.+.++...+.++++...+.+|.|+++|+.+++.+.+.++. .. ++.|||||+|.+.+.+.+..
T Consensus 132 ----~---~~~~~~~~~~~~~~~e~~~~~~ad~ii~~s~~~~~~~~~~~~~~~~~~~~vi~n~vd~~~~~~~~~~~~~~~ 204 (392)
T cd03805 132 ----R---GSLLKRLYRKPFDWLEEFTTGMADKIVVNSNFTASVFKKTFPSLAKNPREVVYPCVDTDSFESTSEDPDPGL 204 (392)
T ss_pred ----C---CcHHHHHHHHHHHHHHHHHhhCceEEEEcChhHHHHHHHHhcccccCCcceeCCCcCHHHcCcccccccccc
Confidence 0 1223344555667788888999999999999999999887764 22 34589999998766543211
Q ss_pred --CCCCCCEEEEEecCCCccChHHHHHHHHHHHHHccCCCCCCeEEEEcCCCCC--CCHHHHHHHHHHHHh-cCCCCcEE
Q 016925 265 --RSTEYPAIISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNK--SDEERLQSLKDKSIE-LKVDGNVE 339 (380)
Q Consensus 265 --~~~~~~~il~VGRl~p~K~~d~li~A~~~l~~~~~~~~~~~~LvIvG~g~~~--~~~~~~~~L~~la~~-lgl~~~V~ 339 (380)
...+.++++++||+.++||++.+++|++.+.++.. ..++++|+++|++... .+.++.+++++++++ +++.++|.
T Consensus 205 ~~~~~~~~~i~~~grl~~~Kg~~~ll~a~~~l~~~~~-~~~~~~l~i~G~~~~~~~~~~~~~~~l~~~~~~~~~l~~~V~ 283 (392)
T cd03805 205 LIPKSGKKTFLSINRFERKKNIALAIEAFAILKDKLA-EFKNVRLVIAGGYDPRVAENVEYLEELQRLAEELLLLEDQVI 283 (392)
T ss_pred cccCCCceEEEEEeeecccCChHHHHHHHHHHHhhcc-cccCeEEEEEcCCCCCCchhHHHHHHHHHHHHHhcCCCceEE
Confidence 11345789999999999999999999999976420 1269999999987532 234567899999999 99999999
Q ss_pred EccCCCHHHHHHHHhhccEEEe-echhhHHH
Q 016925 340 FYKNLLYRSVLTIFMHLFVFTM-KWQLVYDE 369 (380)
Q Consensus 340 f~G~v~~~el~~ly~~a~vf~~-~~~~~~~~ 369 (380)
|+|+++++++.++|+.||++++ +..|.||-
T Consensus 284 f~g~~~~~~~~~~l~~ad~~l~~s~~E~~g~ 314 (392)
T cd03805 284 FLPSISDSQKELLLSSARALLYTPSNEHFGI 314 (392)
T ss_pred EeCCCChHHHHHHHhhCeEEEECCCcCCCCc
Confidence 9999999999999999999885 77888874
No 5
>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases. Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder.
Probab=99.94 E-value=3.9e-25 Score=218.16 Aligned_cols=277 Identities=16% Similarity=0.133 Sum_probs=184.1
Q ss_pred EEEEECCCC-CCCCChhHHHHHHHHHHHHhCCCceEEEEcCCCCCChhhHHHHHHhhcCccccCCCeEEEeccccccccC
Q 016925 36 SVAFFHPNT-NDGGGGERVLWCAVKAIQEESPDLDCIVYTGDHDAFPDSLLARAVDRFGVELLHPPKVVHLYRRKWIEES 114 (380)
Q Consensus 36 ~I~~~~p~~-~~~GG~ervl~~la~~L~~~g~~~~v~v~t~~~~~~~~~~~~~~~~~~g~~l~~~v~~v~l~~~~~~~~~ 114 (380)
||+++.++. ...||+|+++.+++++|.++| |+|+|+|...+.... .+. ...++++.+++........
T Consensus 1 kI~~v~~~~~p~~GG~e~~~~~la~~L~~~G--~~V~v~~~~~~~~~~---~~~-------~~~~i~v~~~p~~~~~~~~ 68 (398)
T cd03796 1 RICMVSDFFYPNLGGVETHIYQLSQCLIKRG--HKVVVITHAYGNRVG---IRY-------LTNGLKVYYLPFVVFYNQS 68 (398)
T ss_pred CeeEEeeccccccccHHHHHHHHHHHHHHcC--CeeEEEeccCCcCCC---ccc-------ccCceeEEEecceeccCCc
Confidence 577766633 356999999999999999998 778888854321100 000 1122334444321110000
Q ss_pred CCCccceehhhHhHHHHHHHHHHhcCCcEEEeCCCchhhHH----HHhHhCCcEEEEEeCCcchhhHHHhhhccccccCC
Q 016925 115 TYPRFTMIGQSFGSVYLSWEALCKFTPLYYFDTSGYAFTYP----LARIFGCRVICYTHYPTISLDMISRVREGSSMYNN 190 (380)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~l~~~~pDi~~~~~~~~~~~~----l~~~~~~p~v~~~H~p~~~~~~~~~~~~~~~~~~~ 190 (380)
.... ....+....+.+.+.+||+++.+.......+ .++..++|.|++.|......+.
T Consensus 69 ~~~~------~~~~~~~l~~~~~~~~~DiIh~~~~~~~~~~~~~~~~~~~~~~~v~t~h~~~~~~~~------------- 129 (398)
T cd03796 69 TLPT------FFGTFPLLRNILIRERITIVHGHQAFSALAHEALLHARTMGLKTVFTDHSLFGFADA------------- 129 (398)
T ss_pred cccc------hhhhHHHHHHHHHhcCCCEEEECCCCchHHHHHHHHhhhcCCcEEEEecccccccch-------------
Confidence 1111 0111112234466789998775543322111 2345678999888843210000
Q ss_pred CccccccchhhhhHHHHHHHHHHHHHHHhcCCCEEEEcCHHHHHHHHHHhCC-CCceEEecCCCCCCCCCCCCCCCCCCC
Q 016925 191 NASIAQSNWLSQCKIVYYTFFSWMYGLVGSCADLAMVNSSWTQSHIEKLWGI-PDRIKRVYPPCDTSGLQVLPLERSTEY 269 (380)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ad~ii~~S~~~~~~i~~~~~~-~~k~~vi~~gvd~~~~~~~~~~~~~~~ 269 (380)
.. ....+..++..+.+|.++++|+..++.+....+. .+++.+||||+|.+.|.+.+....+++
T Consensus 130 ---------~~-------~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~~~~~~k~~vi~ngvd~~~f~~~~~~~~~~~ 193 (398)
T cd03796 130 ---------SS-------IHTNKLLRFSLADVDHVICVSHTSKENTVLRASLDPERVSVIPNAVDSSDFTPDPSKRDNDK 193 (398)
T ss_pred ---------hh-------HHhhHHHHHhhccCCEEEEecHhHhhHHHHHhCCChhhEEEEcCccCHHHcCCCcccCCCCc
Confidence 00 0111233556789999999999988865433333 468899999999876765332122346
Q ss_pred CEEEEEecCCCccChHHHHHHHHHHHHHccCCCCCCeEEEEcCCCCCCCHHHHHHHHHHHHhcCCCCcEEEccCCCHHHH
Q 016925 270 PAIISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRSV 349 (380)
Q Consensus 270 ~~il~VGRl~p~K~~d~li~A~~~l~~~~~~~~~~~~LvIvG~g~~~~~~~~~~~L~~la~~lgl~~~V~f~G~v~~~el 349 (380)
..++++||+.++||++.+++|++.+.++. ++++|+|+|+|+ ..+++++++++++++++|.|+|.++++++
T Consensus 194 ~~i~~~grl~~~Kg~~~li~a~~~l~~~~----~~~~l~i~G~g~------~~~~l~~~~~~~~l~~~v~~~G~~~~~~~ 263 (398)
T cd03796 194 ITIVVISRLVYRKGIDLLVGIIPEICKKH----PNVRFIIGGDGP------KRILLEEMREKYNLQDRVELLGAVPHERV 263 (398)
T ss_pred eEEEEEeccchhcCHHHHHHHHHHHHhhC----CCEEEEEEeCCc------hHHHHHHHHHHhCCCCeEEEeCCCCHHHH
Confidence 78999999999999999999999987654 899999999864 24689999999999999999999999999
Q ss_pred HHHHhhccEEEe-echhhHHH
Q 016925 350 LTIFMHLFVFTM-KWQLVYDE 369 (380)
Q Consensus 350 ~~ly~~a~vf~~-~~~~~~~~ 369 (380)
..+|+.||+|++ ++.|.||-
T Consensus 264 ~~~l~~ad~~v~pS~~E~~g~ 284 (398)
T cd03796 264 RDVLVQGHIFLNTSLTEAFCI 284 (398)
T ss_pred HHHHHhCCEEEeCChhhccCH
Confidence 999999999987 57889884
No 6
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.93 E-value=3.5e-23 Score=214.35 Aligned_cols=291 Identities=15% Similarity=0.079 Sum_probs=183.6
Q ss_pred EEEEECCCCCCCCChhHHHHHHHHHHHHhCC------------CceEEEEcCCCCCChhhHHHHHHhhcCccccCCCeEE
Q 016925 36 SVAFFHPNTNDGGGGERVLWCAVKAIQEESP------------DLDCIVYTGDHDAFPDSLLARAVDRFGVELLHPPKVV 103 (380)
Q Consensus 36 ~I~~~~p~~~~~GG~ervl~~la~~L~~~g~------------~~~v~v~t~~~~~~~~~~~~~~~~~~g~~l~~~v~~v 103 (380)
||+++.+++.. ||+||++.+++.+|...+. ++.|++++.....+++.+...+.+ -|++ +.
T Consensus 283 rIl~vi~sl~~-GGAEr~~~~La~~l~~~~~~~~~~~g~g~~~~~~V~~~~~~~~~g~~~~~~~L~~-~Gv~------v~ 354 (694)
T PRK15179 283 PVLMINGSLGA-GGAERQFVNTAVALQSAIQQGQSIAGYGVLGPVQVVCRSLRSREGADFFAATLAD-AGIP------VS 354 (694)
T ss_pred eEEEEeCCCCC-CcHHHHHHHHHHHHHhcccCcccccCccCCCCcEEEEEecccccCcchHHHHHHh-CCCe------EE
Confidence 99999999964 7999999999999999853 346776643211111222233322 2443 33
Q ss_pred EeccccccccC----CCCccc-----eehhhHhHHHHHHHHHHhcCCcEEEeCCCchhhHH-H-HhHhCCcEEEEE-eCC
Q 016925 104 HLYRRKWIEES----TYPRFT-----MIGQSFGSVYLSWEALCKFTPLYYFDTSGYAFTYP-L-ARIFGCRVICYT-HYP 171 (380)
Q Consensus 104 ~l~~~~~~~~~----~~~~~~-----~~~~~~~~~~~~~~~l~~~~pDi~~~~~~~~~~~~-l-~~~~~~p~v~~~-H~p 171 (380)
.+......... ....+. +-...........+.+++.+|||++++...+..+. + ++..++|+|++. |..
T Consensus 355 ~l~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~L~~~lk~~kpDIVH~h~~~a~~lg~lAa~~~gvPvIv~t~h~~ 434 (694)
T PRK15179 355 VYSDMQAWGGCEFSSLLAPYREYLRFLPKQIIEGTTKLTDVMRSSVPSVVHIWQDGSIFACALAALLAGVPRIVLSVRTM 434 (694)
T ss_pred EeccCCccCcccccccchhhHHHhhhcchhHHHHHHHHHHHHHHcCCcEEEEeCCcHHHHHHHHHHHcCCCEEEEEeCCC
Confidence 33221100000 000000 00001111223345678899998876554443222 2 345678887644 421
Q ss_pred cchhhHHHhhhccccccCCCccccccchhhhhHHHHHHHHHHHHHHHhcCCCEEEEcCHHHHHHHHHHhCC-CCceEEec
Q 016925 172 TISLDMISRVREGSSMYNNNASIAQSNWLSQCKIVYYTFFSWMYGLVGSCADLAMVNSSWTQSHIEKLWGI-PDRIKRVY 250 (380)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ad~ii~~S~~~~~~i~~~~~~-~~k~~vi~ 250 (380)
.. .. . ....+..+..++.. .....++.++++|+.+++.+.+.++. .+++.|||
T Consensus 435 ~~--~~------------------~---~~~~~~~~~~l~~~---l~~~~~~i~Vs~S~~~~~~l~~~~g~~~~kI~VI~ 488 (694)
T PRK15179 435 PP--VD------------------R---PDRYRVEYDIIYSE---LLKMRGVALSSNSQFAAHRYADWLGVDERRIPVVY 488 (694)
T ss_pred cc--cc------------------c---hhHHHHHHHHHHHH---HHhcCCeEEEeCcHHHHHHHHHHcCCChhHEEEEC
Confidence 10 00 0 00111112222111 11235678889999999888776665 46899999
Q ss_pred CCCCCCCCCCCCC--------C--CCCCCCEEEEEecCCCccChHHHHHHHHHHHHHccCCCCCCeEEEEcCCCCCCCHH
Q 016925 251 PPCDTSGLQVLPL--------E--RSTEYPAIISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEE 320 (380)
Q Consensus 251 ~gvd~~~~~~~~~--------~--~~~~~~~il~VGRl~p~K~~d~li~A~~~l~~~~~~~~~~~~LvIvG~g~~~~~~~ 320 (380)
||+|...|.+.+. . ...+.++|++|||++++||++.+|+|++.+.+++ |+++|+|+|+|+
T Consensus 489 NGVd~~~f~~~~~~~~~~~~~~~~~~~~~~vIg~VGRL~~~KG~~~LI~A~a~l~~~~----p~~~LvIvG~G~------ 558 (694)
T PRK15179 489 NGLAPLKSVQDDACTAMMAQFDARTSDARFTVGTVMRVDDNKRPFLWVEAAQRFAASH----PKVRFIMVGGGP------ 558 (694)
T ss_pred CCcCHHhcCCCchhhHHHHhhccccCCCCeEEEEEEeCCccCCHHHHHHHHHHHHHHC----cCeEEEEEccCc------
Confidence 9999776643211 0 1123468999999999999999999999998765 899999999874
Q ss_pred HHHHHHHHHHhcCCCCcEEEccCCCHHHHHHHHhhccEEEe-echhhHHHHHH
Q 016925 321 RLQSLKDKSIELKVDGNVEFYKNLLYRSVLTIFMHLFVFTM-KWQLVYDEFLK 372 (380)
Q Consensus 321 ~~~~L~~la~~lgl~~~V~f~G~v~~~el~~ly~~a~vf~~-~~~~~~~~~~~ 372 (380)
+.++|+++++++|+.++|.|+|+++ ++..+|+.||+|++ +..|.|+.-+-
T Consensus 559 ~~~~L~~l~~~lgL~~~V~flG~~~--dv~~ll~aaDv~VlpS~~Egfp~vlL 609 (694)
T PRK15179 559 LLESVREFAQRLGMGERILFTGLSR--RVGYWLTQFNAFLLLSRFEGLPNVLI 609 (694)
T ss_pred chHHHHHHHHHcCCCCcEEEcCCcc--hHHHHHHhcCEEEeccccccchHHHH
Confidence 3478999999999999999999975 79999999999997 47799887553
No 7
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=99.93 E-value=1.2e-23 Score=207.71 Aligned_cols=289 Identities=14% Similarity=0.110 Sum_probs=182.1
Q ss_pred CCCCCCCCChhHHHHHHHHHHHHhCCCceEEEEcCCCCCChhhHHHHHHhhcCccccCCCeEEEeccccccccCCCCccc
Q 016925 41 HPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYTGDHDAFPDSLLARAVDRFGVELLHPPKVVHLYRRKWIEESTYPRFT 120 (380)
Q Consensus 41 ~p~~~~~GG~ervl~~la~~L~~~g~~~~v~v~t~~~~~~~~~~~~~~~~~~g~~l~~~v~~v~l~~~~~~~~~~~~~~~ 120 (380)
+|.....||+|+++.+++++|+++| |+|+++|......... ..++.+++++..++..... .....
T Consensus 13 ~~~~~~~GG~e~~v~~la~~L~~~G--~~V~v~~~~~~~~~~~---------~~~~~~~~~v~~~~~~~~~---~~~~~- 77 (405)
T TIGR03449 13 QPGTGDAGGMNVYILETATELARRG--IEVDIFTRATRPSQPP---------VVEVAPGVRVRNVVAGPYE---GLDKE- 77 (405)
T ss_pred cCCCcCCCCceehHHHHHHHHhhCC--CEEEEEecccCCCCCC---------ccccCCCcEEEEecCCCcc---cCCHH-
Confidence 3444446999999999999999999 7888888543111000 0112234455555321110 00000
Q ss_pred eehhhHhHHH-HHH-HHHH--hcCCcEEEeCCCchhhHH--HHhHhCCcEEEEEeCCcchhhHHHhhhccccccCCCccc
Q 016925 121 MIGQSFGSVY-LSW-EALC--KFTPLYYFDTSGYAFTYP--LARIFGCRVICYTHYPTISLDMISRVREGSSMYNNNASI 194 (380)
Q Consensus 121 ~~~~~~~~~~-~~~-~~l~--~~~pDi~~~~~~~~~~~~--l~~~~~~p~v~~~H~p~~~~~~~~~~~~~~~~~~~~~~~ 194 (380)
.+...+..+. ... ..++ ..+||+++.+........ +++..++|.|.++|.... . ++. + .
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~Diih~h~~~~~~~~~~~~~~~~~p~v~t~h~~~~---~----~~~---~-----~ 142 (405)
T TIGR03449 78 DLPTQLCAFTGGVLRAEARHEPGYYDLIHSHYWLSGQVGWLLRDRWGVPLVHTAHTLAA---V----KNA---A-----L 142 (405)
T ss_pred HHHHHHHHHHHHHHHHHhhccCCCCCeEEechHHHHHHHHHHHHhcCCCEEEeccchHH---H----HHH---h-----c
Confidence 0001010110 011 1222 347998765543222122 234568999999884321 0 000 0 0
Q ss_pred cccchhhhhHHHHHHHHHHHHHHHhcCCCEEEEcCHHHHHHHHHHhCC-CCceEEecCCCCCCCCCCCCCC-------CC
Q 016925 195 AQSNWLSQCKIVYYTFFSWMYGLVGSCADLAMVNSSWTQSHIEKLWGI-PDRIKRVYPPCDTSGLQVLPLE-------RS 266 (380)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~l~~~~~~~ad~ii~~S~~~~~~i~~~~~~-~~k~~vi~~gvd~~~~~~~~~~-------~~ 266 (380)
... .. .... ....+++...+.+|.++++|+..++.+.+.++. .+++.+|+||+|.+.+.+.+.. ..
T Consensus 143 ~~~--~~-~~~~---~~~~~e~~~~~~~d~vi~~s~~~~~~~~~~~~~~~~ki~vi~ngvd~~~~~~~~~~~~~~~~~~~ 216 (405)
T TIGR03449 143 ADG--DT-PEPE---ARRIGEQQLVDNADRLIANTDEEARDLVRHYDADPDRIDVVAPGADLERFRPGDRATERARLGLP 216 (405)
T ss_pred cCC--CC-CchH---HHHHHHHHHHHhcCeEEECCHHHHHHHHHHcCCChhhEEEECCCcCHHHcCCCcHHHHHHhcCCC
Confidence 000 00 0000 112234566789999999999999988877765 4688999999998766542110 11
Q ss_pred CCCCEEEEEecCCCccChHHHHHHHHHHHHHccCCCCC--CeEEEEcCCCCCCCHHHHHHHHHHHHhcCCCCcEEEccCC
Q 016925 267 TEYPAIISVAQFRPEKAHPLQLEAFSVALRKLDADLPR--PRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNL 344 (380)
Q Consensus 267 ~~~~~il~VGRl~p~K~~d~li~A~~~l~~~~~~~~~~--~~LvIvG~g~~~~~~~~~~~L~~la~~lgl~~~V~f~G~v 344 (380)
.++++|+++||+.+.||++.+++|++.+.++. |+ ++|+|+|++... ..++.++++++++++++.++|.|+|.+
T Consensus 217 ~~~~~i~~~G~l~~~K~~~~li~a~~~l~~~~----~~~~~~l~ivG~~~~~-g~~~~~~l~~~~~~~~l~~~v~~~g~~ 291 (405)
T TIGR03449 217 LDTKVVAFVGRIQPLKAPDVLLRAVAELLDRD----PDRNLRVIVVGGPSGS-GLATPDALIELAAELGIADRVRFLPPR 291 (405)
T ss_pred CCCcEEEEecCCCcccCHHHHHHHHHHHHhhC----CCcceEEEEEeCCCCC-cchHHHHHHHHHHHcCCCceEEECCCC
Confidence 24679999999999999999999999997754 55 999999975321 114567899999999999999999999
Q ss_pred CHHHHHHHHhhccEEEe-echhhHHHH
Q 016925 345 LYRSVLTIFMHLFVFTM-KWQLVYDEF 370 (380)
Q Consensus 345 ~~~el~~ly~~a~vf~~-~~~~~~~~~ 370 (380)
+++++.++|+.||+|++ +..|.||-=
T Consensus 292 ~~~~~~~~l~~ad~~v~ps~~E~~g~~ 318 (405)
T TIGR03449 292 PPEELVHVYRAADVVAVPSYNESFGLV 318 (405)
T ss_pred CHHHHHHHHHhCCEEEECCCCCCcChH
Confidence 99999999999999887 567888853
No 8
>PRK10307 putative glycosyl transferase; Provisional
Probab=99.93 E-value=1e-23 Score=209.00 Aligned_cols=294 Identities=11% Similarity=-0.038 Sum_probs=182.1
Q ss_pred cEEEEECC-CCCCCCChhHHHHHHHHHHHHhCCCceEEEEcCCCCCChhhHHHHHH-hhcCccccCCCeEEEeccccccc
Q 016925 35 TSVAFFHP-NTNDGGGGERVLWCAVKAIQEESPDLDCIVYTGDHDAFPDSLLARAV-DRFGVELLHPPKVVHLYRRKWIE 112 (380)
Q Consensus 35 ~~I~~~~p-~~~~~GG~ervl~~la~~L~~~g~~~~v~v~t~~~~~~~~~~~~~~~-~~~g~~l~~~v~~v~l~~~~~~~ 112 (380)
|||+++.. +....||++.++.+++++|++.| |+|+|+|.....+......... ..+..+..+++++++++...
T Consensus 1 mkIlii~~~~~P~~~g~~~~~~~l~~~L~~~G--~~V~vit~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~r~~~~~--- 75 (412)
T PRK10307 1 MKILVYGINYAPELTGIGKYTGEMAEWLAARG--HEVRVITAPPYYPQWRVGEGYSAWRYRRESEGGVTVWRCPLYV--- 75 (412)
T ss_pred CeEEEEecCCCCCccchhhhHHHHHHHHHHCC--CeEEEEecCCCCCCCCCCcccccccceeeecCCeEEEEccccC---
Confidence 78998875 34556899999999999999998 7788888542110000000000 00001112344555543210
Q ss_pred cCCCCccceehhhHh--HH-HHHHHHH-H--hcCCcEEEeCCCchhhHH----HHhHhCCcEEEEEeCCcchhhHHHhhh
Q 016925 113 ESTYPRFTMIGQSFG--SV-YLSWEAL-C--KFTPLYYFDTSGYAFTYP----LARIFGCRVICYTHYPTISLDMISRVR 182 (380)
Q Consensus 113 ~~~~~~~~~~~~~~~--~~-~~~~~~l-~--~~~pDi~~~~~~~~~~~~----l~~~~~~p~v~~~H~p~~~~~~~~~~~ 182 (380)
. ..+. .+.+... .+ +..+..+ + +.+||+++.+....+..+ +++..++|+++++|... .+.. ..
T Consensus 76 ~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Div~~~~p~~~~~~~~~~~~~~~~~~~v~~~~d~~--~~~~--~~ 148 (412)
T PRK10307 76 P-KQPS--GLKRLLHLGSFALSSFFPLLAQRRWRPDRVIGVVPTLFCAPGARLLARLSGARTWLHIQDYE--VDAA--FG 148 (412)
T ss_pred C-CCcc--HHHHHHHHHHHHHHHHHHHhhccCCCCCEEEEeCCcHHHHHHHHHHHHhhCCCEEEEeccCC--HHHH--HH
Confidence 0 0000 0011110 00 0111111 1 268998765433222222 34456789888777322 1110 00
Q ss_pred ccccccCCCccccccchhhhhHHHHHHHHHHHHHHHhcCCCEEEEcCHHHHHHHHHHhCCCCceEEecCCCCCCCCCCCC
Q 016925 183 EGSSMYNNNASIAQSNWLSQCKIVYYTFFSWMYGLVGSCADLAMVNSSWTQSHIEKLWGIPDRIKRVYPPCDTSGLQVLP 262 (380)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ad~ii~~S~~~~~~i~~~~~~~~k~~vi~~gvd~~~~~~~~ 262 (380)
. . .. . +....+.+.++++...+.+|.|+++|+.+++.+++....++++.+++||+|.+.|.+.+
T Consensus 149 -~--~-----~~-~-------~~~~~~~~~~~~~~~~~~ad~ii~~S~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~ 212 (412)
T PRK10307 149 -L--G-----LL-K-------GGKVARLATAFERSLLRRFDNVSTISRSMMNKAREKGVAAEKVIFFPNWSEVARFQPVA 212 (412)
T ss_pred -h--C-----Cc-c-------CcHHHHHHHHHHHHHHhhCCEEEecCHHHHHHHHHcCCCcccEEEECCCcCHhhcCCCC
Confidence 0 0 00 0 01122344556778888999999999999999887533356899999999987665432
Q ss_pred CC----------CCCCCCEEEEEecCCCccChHHHHHHHHHHHHHccCCCCCCeEEEEcCCCCCCCHHHHHHHHHHHHhc
Q 016925 263 LE----------RSTEYPAIISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIEL 332 (380)
Q Consensus 263 ~~----------~~~~~~~il~VGRl~p~K~~d~li~A~~~l~~~~~~~~~~~~LvIvG~g~~~~~~~~~~~L~~la~~l 332 (380)
.. ..+++++++|+||+.++||++.+++|++.+.+ .++++|+|+|+|+ ..++++++++++
T Consensus 213 ~~~~~~~~~~~~~~~~~~~i~~~G~l~~~kg~~~li~a~~~l~~-----~~~~~l~ivG~g~------~~~~l~~~~~~~ 281 (412)
T PRK10307 213 DADVDALRAQLGLPDGKKIVLYSGNIGEKQGLELVIDAARRLRD-----RPDLIFVICGQGG------GKARLEKMAQCR 281 (412)
T ss_pred ccchHHHHHHcCCCCCCEEEEEcCccccccCHHHHHHHHHHhcc-----CCCeEEEEECCCh------hHHHHHHHHHHc
Confidence 11 01234689999999999999999999998843 2789999999874 347899999999
Q ss_pred CCCCcEEEccCCCHHHHHHHHhhccEEEeec-hhhHH
Q 016925 333 KVDGNVEFYKNLLYRSVLTIFMHLFVFTMKW-QLVYD 368 (380)
Q Consensus 333 gl~~~V~f~G~v~~~el~~ly~~a~vf~~~~-~~~~~ 368 (380)
+++ +|.|+|+++++++.++|+.||+++++. .|.+|
T Consensus 282 ~l~-~v~f~G~~~~~~~~~~~~~aDi~v~ps~~e~~~ 317 (412)
T PRK10307 282 GLP-NVHFLPLQPYDRLPALLKMADCHLLPQKAGAAD 317 (412)
T ss_pred CCC-ceEEeCCCCHHHHHHHHHhcCEeEEeeccCccc
Confidence 997 799999999999999999999988643 45543
No 9
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=99.92 E-value=1.2e-22 Score=204.50 Aligned_cols=274 Identities=18% Similarity=0.190 Sum_probs=178.0
Q ss_pred CCCCcEEEEE-CCC-CCCCCChhHHHHHHHHHHHHhCCCceEEEEcCCCCCChhhHHHHHHhhcCccccCCCeEEEeccc
Q 016925 31 RNRTTSVAFF-HPN-TNDGGGGERVLWCAVKAIQEESPDLDCIVYTGDHDAFPDSLLARAVDRFGVELLHPPKVVHLYRR 108 (380)
Q Consensus 31 ~~~~~~I~~~-~p~-~~~~GG~ervl~~la~~L~~~g~~~~v~v~t~~~~~~~~~~~~~~~~~~g~~l~~~v~~v~l~~~ 108 (380)
+.++|||+++ +|. +...||+++.+.+++++|.++| |+|+++|...+. +++. .|+ +++.....
T Consensus 55 ~~~~mrI~~~~~~~~~~~~gG~~~~~~~l~~~L~~~G--~eV~vlt~~~~~-~~~~-------~g~------~v~~~~~~ 118 (465)
T PLN02871 55 RSRPRRIALFVEPSPFSYVSGYKNRFQNFIRYLREMG--DEVLVVTTDEGV-PQEF-------HGA------KVIGSWSF 118 (465)
T ss_pred cCCCceEEEEECCcCCcccccHHHHHHHHHHHHHHCC--CeEEEEecCCCC-Cccc-------cCc------eeeccCCc
Confidence 3789999977 433 3345899999999999999998 778888765321 1110 122 11211100
Q ss_pred cccccCCCCccce-ehhhHhHHHHHHHHHHhcCCcEEEeCCCchhhHH---HHhHhCCcEEEEEeCCcchhhHHHhhhcc
Q 016925 109 KWIEESTYPRFTM-IGQSFGSVYLSWEALCKFTPLYYFDTSGYAFTYP---LARIFGCRVICYTHYPTISLDMISRVREG 184 (380)
Q Consensus 109 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~pDi~~~~~~~~~~~~---l~~~~~~p~v~~~H~p~~~~~~~~~~~~~ 184 (380)
. ...+..... +... ....+.+++.+||+++.+.......+ +++..++|+|.++|.... +..
T Consensus 119 ~---~~~~~~~~~~~~~~----~~l~~~i~~~kpDiIh~~~~~~~~~~~~~~ak~~~ip~V~~~h~~~~--~~~------ 183 (465)
T PLN02871 119 P---CPFYQKVPLSLALS----PRIISEVARFKPDLIHASSPGIMVFGALFYAKLLCVPLVMSYHTHVP--VYI------ 183 (465)
T ss_pred C---CccCCCceeeccCC----HHHHHHHHhCCCCEEEECCCchhHHHHHHHHHHhCCCEEEEEecCch--hhh------
Confidence 0 000100000 0000 12234577889998764432221111 234568999998884221 110
Q ss_pred ccccCCCccccccchhhhhHHHHHHHHHHHHHHHhcCCCEEEEcCHHHHHHHHHHhCC-CCceEEecCCCCCCCCCCCCC
Q 016925 185 SSMYNNNASIAQSNWLSQCKIVYYTFFSWMYGLVGSCADLAMVNSSWTQSHIEKLWGI-PDRIKRVYPPCDTSGLQVLPL 263 (380)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ad~ii~~S~~~~~~i~~~~~~-~~k~~vi~~gvd~~~~~~~~~ 263 (380)
....+....+ .+..+++...+.+|.++++|+..++.+.+.+.. .+++.+++||+|.+.|.+...
T Consensus 184 ----------~~~~~~~~~~-----~~~~~~r~~~~~ad~ii~~S~~~~~~l~~~~~~~~~kv~vi~nGvd~~~f~p~~~ 248 (465)
T PLN02871 184 ----------PRYTFSWLVK-----PMWDIIRFLHRAADLTLVTSPALGKELEAAGVTAANRIRVWNKGVDSESFHPRFR 248 (465)
T ss_pred ----------hcccchhhHH-----HHHHHHHHHHhhCCEEEECCHHHHHHHHHcCCCCcCeEEEeCCccCccccCCccc
Confidence 0000001111 112344666789999999999999999886533 468999999999887764211
Q ss_pred C---------CCCCCCEEEEEecCCCccChHHHHHHHHHHHHHccCCCCCCeEEEEcCCCCCCCHHHHHHHHHHHHhcCC
Q 016925 264 E---------RSTEYPAIISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKV 334 (380)
Q Consensus 264 ~---------~~~~~~~il~VGRl~p~K~~d~li~A~~~l~~~~~~~~~~~~LvIvG~g~~~~~~~~~~~L~~la~~lgl 334 (380)
. ..+++++|+|+||+.++||++.++++++.+ ++++|+|+|+|+ +.+++++++++
T Consensus 249 ~~~~~~~~~~~~~~~~~i~~vGrl~~~K~~~~li~a~~~~--------~~~~l~ivG~G~------~~~~l~~~~~~--- 311 (465)
T PLN02871 249 SEEMRARLSGGEPEKPLIVYVGRLGAEKNLDFLKRVMERL--------PGARLAFVGDGP------YREELEKMFAG--- 311 (465)
T ss_pred cHHHHHHhcCCCCCCeEEEEeCCCchhhhHHHHHHHHHhC--------CCcEEEEEeCCh------HHHHHHHHhcc---
Confidence 0 112467899999999999999999998765 789999999863 45778888764
Q ss_pred CCcEEEccCCCHHHHHHHHhhccEEEe-echhhHH
Q 016925 335 DGNVEFYKNLLYRSVLTIFMHLFVFTM-KWQLVYD 368 (380)
Q Consensus 335 ~~~V~f~G~v~~~el~~ly~~a~vf~~-~~~~~~~ 368 (380)
++|+|+|+++++|+..+|+.||+|++ +..|.||
T Consensus 312 -~~V~f~G~v~~~ev~~~~~~aDv~V~pS~~E~~g 345 (465)
T PLN02871 312 -TPTVFTGMLQGDELSQAYASGDVFVMPSESETLG 345 (465)
T ss_pred -CCeEEeccCCHHHHHHHHHHCCEEEECCcccccC
Confidence 46999999999999999999999997 5578887
No 10
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional
Probab=99.91 E-value=8.6e-23 Score=201.99 Aligned_cols=143 Identities=17% Similarity=0.121 Sum_probs=119.7
Q ss_pred HHHhcCCCEEEEcCHHHHHHHHHHhCC-CCceEEecCCCCCCCCCCCCCCCCCCCCEEEEEecCCCccChHHHHHHHHHH
Q 016925 216 GLVGSCADLAMVNSSWTQSHIEKLWGI-PDRIKRVYPPCDTSGLQVLPLERSTEYPAIISVAQFRPEKAHPLQLEAFSVA 294 (380)
Q Consensus 216 ~~~~~~ad~ii~~S~~~~~~i~~~~~~-~~k~~vi~~gvd~~~~~~~~~~~~~~~~~il~VGRl~p~K~~d~li~A~~~l 294 (380)
+..++.+|.++++|++.++.+.+. +. ++++.+++||+|.+.|.+.+.....+...|+++||+.++||++.+++|++.+
T Consensus 169 ~~~~~~ad~vv~~S~~~~~~l~~~-g~~~~ki~vi~nGvd~~~f~~~~~~~~~~~~~il~vGrl~~~Kg~~~ll~a~~~l 247 (406)
T PRK15427 169 QQLFRRGDLMLPISDLWAGRLQKM-GCPPEKIAVSRMGVDMTRFSPRPVKAPATPLEIISVARLTEKKGLHVAIEACRQL 247 (406)
T ss_pred HHHHHhCCEEEECCHHHHHHHHHc-CCCHHHEEEcCCCCCHHHcCCCccccCCCCeEEEEEeCcchhcCHHHHHHHHHHH
Confidence 345578999999999999998875 44 4689999999998877643222112345799999999999999999999999
Q ss_pred HHHccCCCCCCeEEEEcCCCCCCCHHHHHHHHHHHHhcCCCCcEEEccCCCHHHHHHHHhhccEEEeech-------hhH
Q 016925 295 LRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRSVLTIFMHLFVFTMKWQ-------LVY 367 (380)
Q Consensus 295 ~~~~~~~~~~~~LvIvG~g~~~~~~~~~~~L~~la~~lgl~~~V~f~G~v~~~el~~ly~~a~vf~~~~~-------~~~ 367 (380)
.++. ++++|+|+|+|+ +.++++++++++|++++|.|+|.++++|+.++|+.||+|+++.. |.|
T Consensus 248 ~~~~----~~~~l~ivG~G~------~~~~l~~~~~~~~l~~~V~~~G~~~~~el~~~l~~aDv~v~pS~~~~~g~~Eg~ 317 (406)
T PRK15427 248 KEQG----VAFRYRILGIGP------WERRLRTLIEQYQLEDVVEMPGFKPSHEVKAMLDDADVFLLPSVTGADGDMEGI 317 (406)
T ss_pred HhhC----CCEEEEEEECch------hHHHHHHHHHHcCCCCeEEEeCCCCHHHHHHHHHhCCEEEECCccCCCCCccCc
Confidence 7654 899999999873 45789999999999999999999999999999999999998753 777
Q ss_pred HH
Q 016925 368 DE 369 (380)
Q Consensus 368 ~~ 369 (380)
+-
T Consensus 318 p~ 319 (406)
T PRK15427 318 PV 319 (406)
T ss_pred cH
Confidence 64
No 11
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=99.91 E-value=3.1e-22 Score=195.40 Aligned_cols=276 Identities=14% Similarity=0.105 Sum_probs=179.2
Q ss_pred CcEEEEECCCCCCCCChhHHHHHHHHHHHHhCCCceEEEEcCCCCCChhhHHHHHHhhcCccccCCCeEEEecccccccc
Q 016925 34 TTSVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYTGDHDAFPDSLLARAVDRFGVELLHPPKVVHLYRRKWIEE 113 (380)
Q Consensus 34 ~~~I~~~~p~~~~~GG~ervl~~la~~L~~~g~~~~v~v~t~~~~~~~~~~~~~~~~~~g~~l~~~v~~v~l~~~~~~~~ 113 (380)
+.+|+++.+.++ .||+|+++.+++++|.+.| +++.+++.... +.+.++..+ .+++++.++...
T Consensus 1 ~~~il~ii~~~~-~GG~e~~~~~l~~~l~~~~--~~~~v~~~~~~---~~~~~~~~~-------~~i~~~~~~~~~---- 63 (374)
T TIGR03088 1 RPLIVHVVYRFD-VGGLENGLVNLINHLPADR--YRHAVVALTEV---SAFRKRIQR-------PDVAFYALHKQP---- 63 (374)
T ss_pred CceEEEEeCCCC-CCcHHHHHHHHHhhccccc--cceEEEEcCCC---ChhHHHHHh-------cCceEEEeCCCC----
Confidence 468999999995 5899999999999999988 44445542211 112222221 123445553311
Q ss_pred CCCCccceehhhHhHHHHHHHHHHhcCCcEEEeCCCchhhHH-HHhHhCCcEEEE-EeCCcchhhHHHhhhccccccCCC
Q 016925 114 STYPRFTMIGQSFGSVYLSWEALCKFTPLYYFDTSGYAFTYP-LARIFGCRVICY-THYPTISLDMISRVREGSSMYNNN 191 (380)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~l~~~~pDi~~~~~~~~~~~~-l~~~~~~p~v~~-~H~p~~~~~~~~~~~~~~~~~~~~ 191 (380)
...+ . .+...++.+++.+||+++.+...+.... .++..+.|..++ .|..... + .
T Consensus 64 --~~~~---~----~~~~l~~~l~~~~~Divh~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~-~-------------~- 119 (374)
T TIGR03088 64 --GKDV---A----VYPQLYRLLRQLRPDIVHTRNLAALEAQLPAALAGVPARIHGEHGRDVF-D-------------L- 119 (374)
T ss_pred --CCCh---H----HHHHHHHHHHHhCCCEEEEcchhHHHHHHHHHhcCCCeEEEeecCcccc-c-------------c-
Confidence 1111 1 1122345678889998775432221111 233445665322 2321100 0 0
Q ss_pred ccccccchhhhhHHHHHHHHHHHHHHHhcCCCEEEEcCHHHHHHHHHHhCC-CCceEEecCCCCCCCCCCCCCC------
Q 016925 192 ASIAQSNWLSQCKIVYYTFFSWMYGLVGSCADLAMVNSSWTQSHIEKLWGI-PDRIKRVYPPCDTSGLQVLPLE------ 264 (380)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ad~ii~~S~~~~~~i~~~~~~-~~k~~vi~~gvd~~~~~~~~~~------ 264 (380)
.. . .+ .+.++.+...+.+|.++++|+.+++.+.+.++. ..++.+||||+|.+.|.+....
T Consensus 120 ---~~----~--~~----~~~~~~~~~~~~~~~~i~vs~~~~~~~~~~~~~~~~~~~vi~ngvd~~~~~~~~~~~~~~~~ 186 (374)
T TIGR03088 120 ---DG----S--NW----KYRWLRRLYRPLIHHYVAVSRDLEDWLRGPVKVPPAKIHQIYNGVDTERFHPSRGDRSPILP 186 (374)
T ss_pred ---hh----h--HH----HHHHHHHHHHhcCCeEEEeCHHHHHHHHHhcCCChhhEEEeccCccccccCCCccchhhhhH
Confidence 00 0 00 111233445567899999999999999887765 4678899999998776543211
Q ss_pred ---CCCCCCEEEEEecCCCccChHHHHHHHHHHHHHccCCCCCCeEEEEcCCCCCCCHHHHHHHHHHHHhcCCCCcEEEc
Q 016925 265 ---RSTEYPAIISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFY 341 (380)
Q Consensus 265 ---~~~~~~~il~VGRl~p~K~~d~li~A~~~l~~~~~~~~~~~~LvIvG~g~~~~~~~~~~~L~~la~~lgl~~~V~f~ 341 (380)
...++.+++++||++++||++.+++|+..+.++.++..++++|+++|+|+ ..++++++++++++++.|.|+
T Consensus 187 ~~~~~~~~~~i~~vGrl~~~Kg~~~li~a~~~l~~~~~~~~~~~~l~i~G~g~------~~~~~~~~~~~~~~~~~v~~~ 260 (374)
T TIGR03088 187 PDFFADESVVVGTVGRLQAVKDQPTLVRAFALLVRQLPEGAERLRLVIVGDGP------ARGACEQMVRAAGLAHLVWLP 260 (374)
T ss_pred hhcCCCCCeEEEEEecCCcccCHHHHHHHHHHHHHhCcccccceEEEEecCCc------hHHHHHHHHHHcCCcceEEEc
Confidence 01245689999999999999999999999987652223479999999874 246889999999999999999
Q ss_pred cCCCHHHHHHHHhhccEEEe-echhhHHHHH
Q 016925 342 KNLLYRSVLTIFMHLFVFTM-KWQLVYDEFL 371 (380)
Q Consensus 342 G~v~~~el~~ly~~a~vf~~-~~~~~~~~~~ 371 (380)
|.. +|+.++|+.||+|++ +..|.||-=+
T Consensus 261 g~~--~~~~~~~~~adi~v~pS~~Eg~~~~~ 289 (374)
T TIGR03088 261 GER--DDVPALMQALDLFVLPSLAEGISNTI 289 (374)
T ss_pred CCc--CCHHHHHHhcCEEEeccccccCchHH
Confidence 974 589999999999986 5678887544
No 12
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=99.90 E-value=1.5e-21 Score=192.51 Aligned_cols=290 Identities=19% Similarity=0.185 Sum_probs=173.4
Q ss_pred EEEEECCCCCCCCChhHHHHHHHHHHHHhCCCceEEEEcCCCCCChhhHHHHHHhhcCccccCCCeEEEeccccccccCC
Q 016925 36 SVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYTGDHDAFPDSLLARAVDRFGVELLHPPKVVHLYRRKWIEEST 115 (380)
Q Consensus 36 ~I~~~~p~~~~~GG~ervl~~la~~L~~~g~~~~v~v~t~~~~~~~~~~~~~~~~~~g~~l~~~v~~v~l~~~~~~~~~~ 115 (380)
||+|+|+.+ +|- ..+++.+|+++| |+|+++|...+... +.+++++.+..........
T Consensus 1 ~il~~~~~~--p~~----~~~la~~L~~~G--~~v~~~~~~~~~~~---------------~~~v~~~~~~~~~~~~~~~ 57 (396)
T cd03818 1 RILFVHQNF--PGQ----FRHLAPALAAQG--HEVVFLTEPNAAPP---------------PGGVRVVRYRPPRGPTSGT 57 (396)
T ss_pred CEEEECCCC--chh----HHHHHHHHHHCC--CEEEEEecCCCCCC---------------CCCeeEEEecCCCCCCCCC
Confidence 589999987 333 347999999998 88888886542110 0134555543321100011
Q ss_pred CCccceehhhHh---HHHHHHHH--HHhcCCcEEEeCCCchhhHHHHhH-hCCcEEEEEeCCcchhhHHHhhhccccccC
Q 016925 116 YPRFTMIGQSFG---SVYLSWEA--LCKFTPLYYFDTSGYAFTYPLARI-FGCRVICYTHYPTISLDMISRVREGSSMYN 189 (380)
Q Consensus 116 ~~~~~~~~~~~~---~~~~~~~~--l~~~~pDi~~~~~~~~~~~~l~~~-~~~p~v~~~H~p~~~~~~~~~~~~~~~~~~ 189 (380)
++....+...+. ........ .+.++||+++++.+.+.++.+... .++|++.++|+..... ..+..+.
T Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdvi~~h~~~~~~~~l~~~~~~~~~v~~~~~~~~~~-------~~~~~~~ 130 (396)
T cd03818 58 HPYLREFEEAVLRGQAVARALLALRAKGFRPDVIVAHPGWGETLFLKDVWPDAPLIGYFEFYYRAE-------GADVGFD 130 (396)
T ss_pred CccchhHHHHHHHHHHHHHHHHHHHhcCCCCCEEEECCccchhhhHHHhCCCCCEEEEEeeeecCC-------CCCCCCC
Confidence 111111111110 11111111 245679998877776544444433 4689999887433210 0001111
Q ss_pred CCccccccchhhhhHHHHHHHHHHHHHHHhcCCCEEEEcCHHHHHHHHHHhCCCCceEEecCCCCCCCCCCCCCCC----
Q 016925 190 NNASIAQSNWLSQCKIVYYTFFSWMYGLVGSCADLAMVNSSWTQSHIEKLWGIPDRIKRVYPPCDTSGLQVLPLER---- 265 (380)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ad~ii~~S~~~~~~i~~~~~~~~k~~vi~~gvd~~~~~~~~~~~---- 265 (380)
.. .. . ........+....+....++.||.+|++|+++++.+.+.++ +++.||+||+|.+.|.+.+...
T Consensus 131 ~~-~~-~----~~~~~~~~~~~~~~~~~~~~~ad~vi~~s~~~~~~~~~~~~--~ki~vI~ngvd~~~f~~~~~~~~~~~ 202 (396)
T cd03818 131 PE-FP-P----SLDDALRLRNRNALILLALAQADAGVSPTRWQRSTFPAELR--SRISVIHDGIDTDRLRPDPQARLRLP 202 (396)
T ss_pred CC-CC-C----chhHHHHHHHhhhHhHHHHHhCCEEECCCHHHHhhCcHhhc--cceEEeCCCccccccCCCchhhhccc
Confidence 10 00 0 00000001111122445678999999999999998877664 6899999999988776532110
Q ss_pred -----CCCCCEEEEEec-CCCccChHHHHHHHHHHHHHccCCCCCCeEEEEcCCCCC-----CC-HHHHHHHHHHHH-hc
Q 016925 266 -----STEYPAIISVAQ-FRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNK-----SD-EERLQSLKDKSI-EL 332 (380)
Q Consensus 266 -----~~~~~~il~VGR-l~p~K~~d~li~A~~~l~~~~~~~~~~~~LvIvG~g~~~-----~~-~~~~~~L~~la~-~l 332 (380)
..+++.|+|+|| +.++||++.+++|++.+.++. |+++|+|+|++... .+ .++.+++.+... ++
T Consensus 203 ~~~~~~~~~~~i~~vgR~l~~~Kg~~~ll~a~~~l~~~~----~~~~lvivG~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 278 (396)
T cd03818 203 NGRVLTPGDEVITFVARNLEPYRGFHVFMRALPRLLRAR----PDARVVIVGGDGVSYGAPPPDGESWKQHMLDELGGRL 278 (396)
T ss_pred ccccCCCCCeEEEEECCCcccccCHHHHHHHHHHHHHHC----CCcEEEEEcCCCcccCCCCCCcccHHHHHHHHhhccc
Confidence 124568999998 999999999999999998764 89999999974210 01 113333322222 22
Q ss_pred CCCCcEEEccCCCHHHHHHHHhhccEEEe-echhhHH
Q 016925 333 KVDGNVEFYKNLLYRSVLTIFMHLFVFTM-KWQLVYD 368 (380)
Q Consensus 333 gl~~~V~f~G~v~~~el~~ly~~a~vf~~-~~~~~~~ 368 (380)
+ .++|+|+|+++++++..+|+.||+|++ +..|.||
T Consensus 279 ~-~~~V~f~G~v~~~~~~~~l~~adv~v~~s~~e~~~ 314 (396)
T cd03818 279 D-LSRVHFLGRVPYDQYLALLQVSDVHVYLTYPFVLS 314 (396)
T ss_pred C-cceEEEeCCCCHHHHHHHHHhCcEEEEcCcccccc
Confidence 2 589999999999999999999999987 5567666
No 13
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.90 E-value=7e-22 Score=191.98 Aligned_cols=272 Identities=15% Similarity=0.084 Sum_probs=176.2
Q ss_pred cEEEEECCCCCCCCChhHHHHHHHHHHHHhCCCceEEEEcCCCCCChhhHHHHHHhhcCccccCCCeEEEeccccccccC
Q 016925 35 TSVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYTGDHDAFPDSLLARAVDRFGVELLHPPKVVHLYRRKWIEES 114 (380)
Q Consensus 35 ~~I~~~~p~~~~~GG~ervl~~la~~L~~~g~~~~v~v~t~~~~~~~~~~~~~~~~~~g~~l~~~v~~v~l~~~~~~~~~ 114 (380)
|||+++++ ...||+|+++.+++++|++.| |+|.++|...+.. .... .+.+.+...+..
T Consensus 1 mki~~~~~--p~~gG~~~~~~~la~~L~~~G--~~v~v~~~~~~~~---~~~~---------~~~~~~~~~~~~------ 58 (371)
T cd04962 1 MKIGIVCY--PTYGGSGVVATELGKALARRG--HEVHFITSSRPFR---LDEY---------SPNIFFHEVEVP------ 58 (371)
T ss_pred CceeEEEE--eCCCCccchHHHHHHHHHhcC--CceEEEecCCCcc---hhhh---------ccCeEEEEeccc------
Confidence 68888864 245899999999999999999 6677777543211 0000 011112111110
Q ss_pred CCCccceehhhHhHHHHHHHHHHhcCCcEEEeCCCchhhHH--HH-hH---hCCcEEEEEeCCcchhhHHHhhhcccccc
Q 016925 115 TYPRFTMIGQSFGSVYLSWEALCKFTPLYYFDTSGYAFTYP--LA-RI---FGCRVICYTHYPTISLDMISRVREGSSMY 188 (380)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~l~~~~pDi~~~~~~~~~~~~--l~-~~---~~~p~v~~~H~p~~~~~~~~~~~~~~~~~ 188 (380)
.++................+.+++.+||+++.+.......+ ++ +. .++|++.++|..... . .
T Consensus 59 ~~~~~~~~~~~~~~~~~l~~~i~~~~~divh~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~--~----------~ 126 (371)
T cd04962 59 QYPLFQYPPYDLALASKIAEVAKRYKLDLLHVHYAVPHAVAAYLAREILGKKDLPVVTTLHGTDIT--L----------V 126 (371)
T ss_pred ccchhhcchhHHHHHHHHHHHHhcCCccEEeecccCCccHHHHHHHHhcCcCCCcEEEEEcCCccc--c----------c
Confidence 01100000000001112234577889998764433221111 22 22 278999999954321 0 0
Q ss_pred CCCccccccchhhhhHHHHHHHHHHHHHHHhcCCCEEEEcCHHHHHHHHHHhCCCCceEEecCCCCCCCCCCCCCC----
Q 016925 189 NNNASIAQSNWLSQCKIVYYTFFSWMYGLVGSCADLAMVNSSWTQSHIEKLWGIPDRIKRVYPPCDTSGLQVLPLE---- 264 (380)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ad~ii~~S~~~~~~i~~~~~~~~k~~vi~~gvd~~~~~~~~~~---- 264 (380)
.. . . .+..+.+...+.+|.++++|+..++.+.+.++...++.+++||+|...+.+....
T Consensus 127 ~~-----~----~--------~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~~~~~~i~vi~n~~~~~~~~~~~~~~~~~ 189 (371)
T cd04962 127 GQ-----D----P--------SFQPATRFSIEKSDGVTAVSESLRQETYELFDITKEIEVIPNFVDEDRFRPKPDEALKR 189 (371)
T ss_pred cc-----c----c--------cchHHHHHHHhhCCEEEEcCHHHHHHHHHhcCCcCCEEEecCCcCHhhcCCCchHHHHH
Confidence 00 0 0 0112345566789999999999999988876555688999999987655432111
Q ss_pred ---CCCCCCEEEEEecCCCccChHHHHHHHHHHHHHccCCCCCCeEEEEcCCCCCCCHHHHHHHHHHHHhcCCCCcEEEc
Q 016925 265 ---RSTEYPAIISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFY 341 (380)
Q Consensus 265 ---~~~~~~~il~VGRl~p~K~~d~li~A~~~l~~~~~~~~~~~~LvIvG~g~~~~~~~~~~~L~~la~~lgl~~~V~f~ 341 (380)
...++..++++||+.++||++.+++|+..+.++ ++++|+++|+|.. .+.+++++++++++++|.|.
T Consensus 190 ~~~~~~~~~~il~~g~l~~~K~~~~li~a~~~l~~~-----~~~~l~i~G~g~~------~~~~~~~~~~~~~~~~v~~~ 258 (371)
T cd04962 190 RLGAPEGEKVLIHISNFRPVKRIDDVIRIFAKVRKE-----VPARLLLVGDGPE------RSPAERLARELGLQDDVLFL 258 (371)
T ss_pred hcCCCCCCeEEEEecccccccCHHHHHHHHHHHHhc-----CCceEEEEcCCcC------HHHHHHHHHHcCCCceEEEe
Confidence 112457899999999999999999999998654 5799999998742 36789999999999999999
Q ss_pred cCCCHHHHHHHHhhccEEEe-echhhHHHH
Q 016925 342 KNLLYRSVLTIFMHLFVFTM-KWQLVYDEF 370 (380)
Q Consensus 342 G~v~~~el~~ly~~a~vf~~-~~~~~~~~~ 370 (380)
|..+ ++.++|+.||++++ ++.|.||-=
T Consensus 259 g~~~--~~~~~~~~~d~~v~ps~~E~~~~~ 286 (371)
T cd04962 259 GKQD--HVEELLSIADLFLLPSEKESFGLA 286 (371)
T ss_pred cCcc--cHHHHHHhcCEEEeCCCcCCCccH
Confidence 9864 79999999999997 457888843
No 14
>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light.
Probab=99.90 E-value=1.8e-21 Score=190.64 Aligned_cols=285 Identities=17% Similarity=0.114 Sum_probs=180.8
Q ss_pred CCCChhHHHHHHHHHHHHhCCCceEEEEcCCCCCChhhHHHHHHhhcCccccCCCeEEEeccccccccCCCCccceehhh
Q 016925 46 DGGGGERVLWCAVKAIQEESPDLDCIVYTGDHDAFPDSLLARAVDRFGVELLHPPKVVHLYRRKWIEESTYPRFTMIGQS 125 (380)
Q Consensus 46 ~~GG~ervl~~la~~L~~~g~~~~v~v~t~~~~~~~~~~~~~~~~~~g~~l~~~v~~v~l~~~~~~~~~~~~~~~~~~~~ 125 (380)
..||+++++.+++++|+++| |+|.+++...+..... .....+++.+..+..... ...+....+...
T Consensus 19 ~~GG~~~~~~~l~~~L~~~g--~~V~v~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 84 (398)
T cd03800 19 DTGGQNVYVLELARALARLG--HEVDIFTRRIDDALPP---------IVELAPGVRVVRVPAGPA---EYLPKEELWPYL 84 (398)
T ss_pred CCCceeehHHHHHHHHhccC--ceEEEEEecCCcccCC---------ccccccceEEEecccccc---cCCChhhcchhH
Confidence 35899999999999999998 7777887543211100 011122334443322110 000000000000
Q ss_pred HhHHHHHHHHHHhc--CCcEEEeCCCchhhHH--HHhHhCCcEEEEEeCCcchhhHHHhhhccccccCCCccccccchhh
Q 016925 126 FGSVYLSWEALCKF--TPLYYFDTSGYAFTYP--LARIFGCRVICYTHYPTISLDMISRVREGSSMYNNNASIAQSNWLS 201 (380)
Q Consensus 126 ~~~~~~~~~~l~~~--~pDi~~~~~~~~~~~~--l~~~~~~p~v~~~H~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (380)
........+.+++. +||+++++........ +++..++|.+.+.|..... . . .. . .. ..
T Consensus 85 ~~~~~~~~~~~~~~~~~~Div~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~-~-----------~-~~-~-~~---~~ 146 (398)
T cd03800 85 DEFADDLLRFLRREGGRPDLIHAHYWDSGLVALLLARRLGIPLVHTFHSLGAV-K-----------R-RH-L-GA---AD 146 (398)
T ss_pred HHHHHHHHHHHHhcCCCccEEEEecCccchHHHHHHhhcCCceEEEeeccccc-C-----------C-cc-c-cc---cc
Confidence 00001112334555 8998765432221111 3345688999888853310 0 0 00 0 00 00
Q ss_pred hhHHHHHHHHHHHHHHHhcCCCEEEEcCHHHHHHHHHHhCC-CCceEEecCCCCCCCCCCCCC--------CCCCCCCEE
Q 016925 202 QCKIVYYTFFSWMYGLVGSCADLAMVNSSWTQSHIEKLWGI-PDRIKRVYPPCDTSGLQVLPL--------ERSTEYPAI 272 (380)
Q Consensus 202 ~~~~~~~~~~~~l~~~~~~~ad~ii~~S~~~~~~i~~~~~~-~~k~~vi~~gvd~~~~~~~~~--------~~~~~~~~i 272 (380)
+.. .......++.+.+.+|.++++|+..++.+.+.+.. ..++.+++||+|.+.+.+... ....+++++
T Consensus 147 ~~~---~~~~~~~~~~~~~~ad~ii~~s~~~~~~~~~~~~~~~~~~~vi~ng~~~~~~~~~~~~~~~~~~~~~~~~~~~i 223 (398)
T cd03800 147 TYE---PARRIEAEERLLRAADRVIASTPQEAEELYSLYGAYPRRIRVVPPGVDLERFTPYGRAEARRARLLRDPDKPRI 223 (398)
T ss_pred ccc---hhhhhhHHHHHHhhCCEEEEcCHHHHHHHHHHccccccccEEECCCCCccceecccchhhHHHhhccCCCCcEE
Confidence 000 01112345667789999999999999998887764 346889999999876654221 112346799
Q ss_pred EEEecCCCccChHHHHHHHHHHHHHccCCCCCCeEEEEcCCCCCCCHHHHHHHHHHHHhcCCCCcEEEccCCCHHHHHHH
Q 016925 273 ISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRSVLTI 352 (380)
Q Consensus 273 l~VGRl~p~K~~d~li~A~~~l~~~~~~~~~~~~LvIvG~g~~~~~~~~~~~L~~la~~lgl~~~V~f~G~v~~~el~~l 352 (380)
+++||+.+.||++.+++|+..+.++. ++++|+++|++.......+.++++++++++++.++|.|+|.++.+++..+
T Consensus 224 ~~~gr~~~~k~~~~ll~a~~~l~~~~----~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~ 299 (398)
T cd03800 224 LAVGRLDPRKGIDTLIRAYAELPELR----ERANLVIVGGPRDDILAMDEEELRELARELGVIDRVDFPGRVSREDLPAL 299 (398)
T ss_pred EEEcccccccCHHHHHHHHHHHHHhC----CCeEEEEEECCCCcchhhhhHHHHHHHHhcCCCceEEEeccCCHHHHHHH
Confidence 99999999999999999999997754 89999999988654333445678999999999999999999999999999
Q ss_pred HhhccEEEe-echhhHHH
Q 016925 353 FMHLFVFTM-KWQLVYDE 369 (380)
Q Consensus 353 y~~a~vf~~-~~~~~~~~ 369 (380)
|+.||++++ ++.|.||-
T Consensus 300 ~~~adi~l~ps~~e~~~~ 317 (398)
T cd03800 300 YRAADVFVNPALYEPFGL 317 (398)
T ss_pred HHhCCEEEecccccccCc
Confidence 999999886 56688874
No 15
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=99.90 E-value=1.7e-21 Score=188.05 Aligned_cols=272 Identities=17% Similarity=0.118 Sum_probs=178.0
Q ss_pred EEEEECCCCCCCCChhHHHHHHHHHHHHhCCCceEEEEcCCCCCChhhHHHHHHhhcCccccCCCeEEEeccccccccCC
Q 016925 36 SVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYTGDHDAFPDSLLARAVDRFGVELLHPPKVVHLYRRKWIEEST 115 (380)
Q Consensus 36 ~I~~~~p~~~~~GG~ervl~~la~~L~~~g~~~~v~v~t~~~~~~~~~~~~~~~~~~g~~l~~~v~~v~l~~~~~~~~~~ 115 (380)
||+++++++ ..||+++++.+++++|.+.| ++|++++...... ...+... ..++ .+..++..
T Consensus 1 kIl~~~~~~-~~GG~~~~~~~l~~~L~~~~--~~v~~i~~~~~~~--~~~~~~~-~~~~------~~~~~~~~------- 61 (358)
T cd03812 1 KILHIVGTM-NRGGIETFIMNYYRNLDRSK--IQFDFLVTSKEEG--DYDDEIE-KLGG------KIYYIPAR------- 61 (358)
T ss_pred CEEEEeCCC-CCccHHHHHHHHHHhcCccc--eEEEEEEeCCCCc--chHHHHH-HcCC------eEEEecCC-------
Confidence 689999988 56899999999999999887 7777777543211 1112211 1122 23332210
Q ss_pred CCccceehhhHhHHHHHHHHHHhcCCcEEEeCCCchhhHH--HHhHhCCcE-EEEEeCCcchhhHHHhhhccccccCCCc
Q 016925 116 YPRFTMIGQSFGSVYLSWEALCKFTPLYYFDTSGYAFTYP--LARIFGCRV-ICYTHYPTISLDMISRVREGSSMYNNNA 192 (380)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~l~~~~pDi~~~~~~~~~~~~--l~~~~~~p~-v~~~H~p~~~~~~~~~~~~~~~~~~~~~ 192 (380)
.. ...... ....+.+++.+||+++.+.......+ +++..+.|. +.+.|......
T Consensus 62 ~~---~~~~~~---~~~~~~~~~~~~Dvv~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~----------------- 118 (358)
T cd03812 62 KK---NPLKYF---KKLYKLIKKNKYDIVHVHGSSASGFILLAAKKAGVKVRIAHSHNTSDSH----------------- 118 (358)
T ss_pred Cc---cHHHHH---HHHHHHHhcCCCCEEEEeCcchhHHHHHHHhhCCCCeEEEEeccccccc-----------------
Confidence 00 011111 11223467889998765443222222 122345555 44556432110
Q ss_pred cccccchhhhhHHHHHHHHHHHHHHHhcCCCEEEEcCHHHHHHHHHHhCCCCceEEecCCCCCCCCCCCCCC--------
Q 016925 193 SIAQSNWLSQCKIVYYTFFSWMYGLVGSCADLAMVNSSWTQSHIEKLWGIPDRIKRVYPPCDTSGLQVLPLE-------- 264 (380)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ad~ii~~S~~~~~~i~~~~~~~~k~~vi~~gvd~~~~~~~~~~-------- 264 (380)
.. .. ....+ ..+.+...+.+|.++++|+..++.+.+.. ...++.+|+||+|.+.+.+.+..
T Consensus 119 ---~~--~~--~~~~~---~~~~~~~~~~~~~~i~~s~~~~~~~~~~~-~~~~~~vi~ngvd~~~~~~~~~~~~~~~~~~ 187 (358)
T cd03812 119 ---DK--KK--KILKY---KVLRKLINRLATDYLACSEEAGKWLFGKV-KNKKFKVIPNGIDLEKFIFNEEIRKKRRELG 187 (358)
T ss_pred ---cc--cc--hhhHH---HHHHHHHHhcCCEEEEcCHHHHHHHHhCC-CcccEEEEeccCcHHHcCCCchhhhHHHHcC
Confidence 00 00 00001 23345567789999999999998877652 24689999999998765432110
Q ss_pred CCCCCCEEEEEecCCCccChHHHHHHHHHHHHHccCCCCCCeEEEEcCCCCCCCHHHHHHHHHHHHhcCCCCcEEEccCC
Q 016925 265 RSTEYPAIISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNL 344 (380)
Q Consensus 265 ~~~~~~~il~VGRl~p~K~~d~li~A~~~l~~~~~~~~~~~~LvIvG~g~~~~~~~~~~~L~~la~~lgl~~~V~f~G~v 344 (380)
...+++.|+++||+.++||++.+++|+..+.+.. ++++++|+|+|+ ..+.+++.++++++.++|.|+|.
T Consensus 188 ~~~~~~~i~~vGr~~~~Kg~~~li~a~~~l~~~~----~~~~l~ivG~g~------~~~~~~~~~~~~~~~~~v~~~g~- 256 (358)
T cd03812 188 ILEDKFVIGHVGRFSEQKNHEFLIEIFAELLKKN----PNAKLLLVGDGE------LEEEIKKKVKELGLEDKVIFLGV- 256 (358)
T ss_pred CCCCCEEEEEEeccccccChHHHHHHHHHHHHhC----CCeEEEEEeCCc------hHHHHHHHHHhcCCCCcEEEecc-
Confidence 1235678999999999999999999999998764 899999999874 24678889999999999999998
Q ss_pred CHHHHHHHHhhccEEEe-echhhHHHHHH
Q 016925 345 LYRSVLTIFMHLFVFTM-KWQLVYDEFLK 372 (380)
Q Consensus 345 ~~~el~~ly~~a~vf~~-~~~~~~~~~~~ 372 (380)
.+++.++|+.||++++ +..|.||-=+-
T Consensus 257 -~~~~~~~~~~adi~v~ps~~E~~~~~~l 284 (358)
T cd03812 257 -RNDVPELLQAMDVFLFPSLYEGLPLVLI 284 (358)
T ss_pred -cCCHHHHHHhcCEEEecccccCCCHHHH
Confidence 5689999999999997 45688775443
No 16
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=99.90 E-value=7.1e-22 Score=191.65 Aligned_cols=203 Identities=20% Similarity=0.205 Sum_probs=149.7
Q ss_pred HHHhcCCcEEEeCCCchhhHH--HHhHhCCcEEEEEeCCcchhhHHHhhhccccccCCCccccccchhhhhHHHHHHHHH
Q 016925 135 ALCKFTPLYYFDTSGYAFTYP--LARIFGCRVICYTHYPTISLDMISRVREGSSMYNNNASIAQSNWLSQCKIVYYTFFS 212 (380)
Q Consensus 135 ~l~~~~pDi~~~~~~~~~~~~--l~~~~~~p~v~~~H~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (380)
.+++.+||+++++.+...... +++..++|.++++|....... . ....... ++.+.
T Consensus 77 ~~~~~~~dvvh~~~~~~~~~~~~~~~~~~~p~i~~~h~~~~~~~-------------~-----~~~~~~~-----~~~~~ 133 (367)
T cd05844 77 LLRRHRPDLVHAHFGFDGVYALPLARRLGVPLVVTFHGFDATTS-------------L-----ALLLRSR-----WALYA 133 (367)
T ss_pred HHHhhCCCEEEeccCchHHHHHHHHHHcCCCEEEEEeCcccccc-------------c-----hhhcccc-----hhHHH
Confidence 467889998776544332211 344568999999995432100 0 0000000 22233
Q ss_pred HHHHHHhcCCCEEEEcCHHHHHHHHHHhCCCCceEEecCCCCCCCCCCCCCCCCCCCCEEEEEecCCCccChHHHHHHHH
Q 016925 213 WMYGLVGSCADLAMVNSSWTQSHIEKLWGIPDRIKRVYPPCDTSGLQVLPLERSTEYPAIISVAQFRPEKAHPLQLEAFS 292 (380)
Q Consensus 213 ~l~~~~~~~ad~ii~~S~~~~~~i~~~~~~~~k~~vi~~gvd~~~~~~~~~~~~~~~~~il~VGRl~p~K~~d~li~A~~ 292 (380)
.+++...+.+|.++++|+.+++.+.+......++.+++||+|.+.+.+.+.. .+++.++++||+.+.||++.+++|++
T Consensus 134 ~~~~~~~~~~d~ii~~s~~~~~~~~~~~~~~~~i~vi~~g~d~~~~~~~~~~--~~~~~i~~~G~~~~~K~~~~li~a~~ 211 (367)
T cd05844 134 RRRRRLARRAALFIAVSQFIRDRLLALGFPPEKVHVHPIGVDTAKFTPATPA--RRPPRILFVGRFVEKKGPLLLLEAFA 211 (367)
T ss_pred HHHHHHHHhcCEEEECCHHHHHHHHHcCCCHHHeEEecCCCCHHhcCCCCCC--CCCcEEEEEEeeccccChHHHHHHHH
Confidence 4556677899999999999999988753224578899999998766643221 24679999999999999999999999
Q ss_pred HHHHHccCCCCCCeEEEEcCCCCCCCHHHHHHHHHHHHhcCCCCcEEEccCCCHHHHHHHHhhccEEEeec-------hh
Q 016925 293 VALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRSVLTIFMHLFVFTMKW-------QL 365 (380)
Q Consensus 293 ~l~~~~~~~~~~~~LvIvG~g~~~~~~~~~~~L~~la~~lgl~~~V~f~G~v~~~el~~ly~~a~vf~~~~-------~~ 365 (380)
.+.++. ++++|+|+|+++ +.++++++++++|+.++|.|+|.++++++.++|+.||+|+++. .|
T Consensus 212 ~l~~~~----~~~~l~ivG~g~------~~~~~~~~~~~~~~~~~v~~~g~~~~~~l~~~~~~ad~~v~ps~~~~~~~~E 281 (367)
T cd05844 212 RLARRV----PEVRLVIIGDGP------LLAALEALARALGLGGRVTFLGAQPHAEVRELMRRARIFLQPSVTAPSGDAE 281 (367)
T ss_pred HHHHhC----CCeEEEEEeCch------HHHHHHHHHHHcCCCCeEEECCCCCHHHHHHHHHhCCEEEECcccCCCCCcc
Confidence 997764 899999999753 4578999999999999999999999999999999999999865 47
Q ss_pred hHHHHHH
Q 016925 366 VYDEFLK 372 (380)
Q Consensus 366 ~~~~~~~ 372 (380)
.||-=+-
T Consensus 282 ~~~~~~~ 288 (367)
T cd05844 282 GLPVVLL 288 (367)
T ss_pred CCchHHH
Confidence 7775433
No 17
>cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases. wbaZ in Salmonella enterica has been shown to possess the mannosyl transferase activity. The members of this family are found in certain bacteria and Archaea.
Probab=99.90 E-value=7e-22 Score=191.29 Aligned_cols=278 Identities=19% Similarity=0.220 Sum_probs=170.7
Q ss_pred EEEEECCCCCCCCChhHHHHHHHHHHHHhCCCceEEEEcCCCCCChhhHHHHHHhhcCccccCCCeEEEeccccccccCC
Q 016925 36 SVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYTGDHDAFPDSLLARAVDRFGVELLHPPKVVHLYRRKWIEEST 115 (380)
Q Consensus 36 ~I~~~~p~~~~~GG~ervl~~la~~L~~~g~~~~v~v~t~~~~~~~~~~~~~~~~~~g~~l~~~v~~v~l~~~~~~~~~~ 115 (380)
|||++|+++...||+|+++.++++.|.+ +++.....+.+.. ...... ..+....+...+. .
T Consensus 1 ~i~~~~~~~~~~GG~E~~~~~l~~~l~~----~~v~~~~~~~~~~-~~~~~~----------~~~~~~~~~~~~~----~ 61 (351)
T cd03804 1 KVAIVHDWLVNIGGGEKVVEALARLFPD----ADIFTLVDDPDKL-PRLLRL----------KKIRTSFIQKLPF----A 61 (351)
T ss_pred CEEEEEeccccCCCHHHHHHHHHHhCCC----CCEEEEeecCCcc-chhhcC----------Cceeechhhhchh----h
Confidence 6999999998889999999999999864 3333332221111 100000 0011111111000 0
Q ss_pred CCccceehhhHhHHHHHHHHHHhcCCcEEEeCCCchhhHHHHhHhCCcEEEEEeCCcchh-hHHHhhhccccccCCCccc
Q 016925 116 YPRFTMIGQSFGSVYLSWEALCKFTPLYYFDTSGYAFTYPLARIFGCRVICYTHYPTISL-DMISRVREGSSMYNNNASI 194 (380)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~l~~~~pDi~~~~~~~~~~~~l~~~~~~p~v~~~H~p~~~~-~~~~~~~~~~~~~~~~~~~ 194 (380)
......+.. .+...++.+...++|+++++.... ...+....++|.++++|.+.... +.. +.+.
T Consensus 62 ~~~~~~~~~---~~~~~~~~~~~~~~D~v~~~~~~~-~~~~~~~~~~~~~~~~h~~~~~~~~~~------------~~~~ 125 (351)
T cd03804 62 RRRYRKYLP---LMPLAIEQFDLSGYDLVISSSHAV-AKGVITRPDQLHICYCHTPMRYAWDLY------------HDYL 125 (351)
T ss_pred HhhHhhhCc---hhhHHHHhccccCCCEEEEcCcHH-hccccCCCCCcEEEEeCCchHHHhcCc------------hHhh
Confidence 000000000 011123344566789876544311 11122235688999999764210 100 0000
Q ss_pred cccchhhh-hHHHHHHHHHHHHHHHhcCCCEEEEcCHHHHHHHHHHhCCCCceEEecCCCCCCCCCCCCCCCCCCCCEEE
Q 016925 195 AQSNWLSQ-CKIVYYTFFSWMYGLVGSCADLAMVNSSWTQSHIEKLWGIPDRIKRVYPPCDTSGLQVLPLERSTEYPAII 273 (380)
Q Consensus 195 ~~~~~~~~-~~~~~~~~~~~l~~~~~~~ad~ii~~S~~~~~~i~~~~~~~~k~~vi~~gvd~~~~~~~~~~~~~~~~~il 273 (380)
...+.... ........+..+++...+.+|.++++|+.+++.+.+.++. +..+++||+|.+.+.+.+ .++++++
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~S~~~~~~~~~~~~~--~~~vi~~~~d~~~~~~~~----~~~~~il 199 (351)
T cd03804 126 KESGLGKRLALRLLLHYLRIWDRRSAARVDYFIANSRFVARRIKKYYGR--DATVIYPPVDTDRFTPAE----EKEDYYL 199 (351)
T ss_pred hhcccchhhHHHHHHHHHHHHHHHHhcCCCEEEECCHHHHHHHHHHhCC--CcEEECCCCCHhhcCcCC----CCCCEEE
Confidence 00000000 0011223344566677899999999999999999887763 567999999987776432 1357899
Q ss_pred EEecCCCccChHHHHHHHHHHHHHccCCCCCCeEEEEcCCCCCCCHHHHHHHHHHHHhcCCCCcEEEccCCCHHHHHHHH
Q 016925 274 SVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRSVLTIF 353 (380)
Q Consensus 274 ~VGRl~p~K~~d~li~A~~~l~~~~~~~~~~~~LvIvG~g~~~~~~~~~~~L~~la~~lgl~~~V~f~G~v~~~el~~ly 353 (380)
++||+.+.||++.+++|++.+ + ++|+|+|+|+. .+++++ ++.++|+|+|+++++++.++|
T Consensus 200 ~~G~~~~~K~~~~li~a~~~~--------~-~~l~ivG~g~~------~~~l~~-----~~~~~V~~~g~~~~~~~~~~~ 259 (351)
T cd03804 200 SVGRLVPYKRIDLAIEAFNKL--------G-KRLVVIGDGPE------LDRLRA-----KAGPNVTFLGRVSDEELRDLY 259 (351)
T ss_pred EEEcCccccChHHHHHHHHHC--------C-CcEEEEECChh------HHHHHh-----hcCCCEEEecCCCHHHHHHHH
Confidence 999999999999999999865 5 89999998742 244444 567999999999999999999
Q ss_pred hhccEEEeechhhHHHHHHHH
Q 016925 354 MHLFVFTMKWQLVYDEFLKLY 374 (380)
Q Consensus 354 ~~a~vf~~~~~~~~~~~~~~~ 374 (380)
++||+++++..|.||--+--+
T Consensus 260 ~~ad~~v~ps~e~~g~~~~Ea 280 (351)
T cd03804 260 ARARAFLFPAEEDFGIVPVEA 280 (351)
T ss_pred HhCCEEEECCcCCCCchHHHH
Confidence 999999987779998655333
No 18
>TIGR02472 sucr_P_syn_N sucrose-phosphate synthase, putative, glycosyltransferase domain. This family consists of the N-terminal regions, or in some cases the entirety, of bacterial proteins closely related to plant sucrose-phosphate synthases (SPS). The C-terminal domain (TIGR02471), found with most members of this family, resembles both bona fide plant sucrose-phosphate phosphatases (SPP) and the SPP-like domain of plant SPS. At least two members of this family lack the SPP-like domain, which may have binding or regulatory rather than enzymatic activity by analogy to plant SPS. This enzyme produces sucrose 6-phosphate and UDP from UDP-glucose and D-fructose 6-phosphate, and may be encoded near the gene for fructokinase.
Probab=99.89 E-value=8e-21 Score=189.93 Aligned_cols=298 Identities=16% Similarity=0.098 Sum_probs=172.6
Q ss_pred CCCChhHHHHHHHHHHHHhCCCceEEEEcCCCCC---ChhhHHHHHHhhcCccccCCCeEEEeccccccccCCCCcccee
Q 016925 46 DGGGGERVLWCAVKAIQEESPDLDCIVYTGDHDA---FPDSLLARAVDRFGVELLHPPKVVHLYRRKWIEESTYPRFTMI 122 (380)
Q Consensus 46 ~~GG~ervl~~la~~L~~~g~~~~v~v~t~~~~~---~~~~~~~~~~~~~g~~l~~~v~~v~l~~~~~~~~~~~~~~~~~ 122 (380)
..||+|+++.+++++|.++|+-++|+|+|...+. .++ ..... .+..++++++.++... ..+......
T Consensus 24 ~~GG~~~~v~~La~~L~~~G~~~~V~v~t~~~~~~~~~~~-~~~~~-----~~~~~gv~v~r~~~~~----~~~~~~~~~ 93 (439)
T TIGR02472 24 DTGGQTKYVLELARALARRSEVEQVDLVTRLIKDAKVSPD-YAQPI-----ERIAPGARIVRLPFGP----RRYLRKELL 93 (439)
T ss_pred CCCCcchHHHHHHHHHHhCCCCcEEEEEeccccCcCCCCc-cCCCe-----eEeCCCcEEEEecCCC----CCCcChhhh
Confidence 3489999999999999999832278888853211 010 00000 0122345566554311 111110001
Q ss_pred hhhHhHHH-HHHHHHHh--cCCcEEEeCCCchhhHH--HHhHhCCcEEEEEeCCcchhhHHHhhhccccccCCCcccccc
Q 016925 123 GQSFGSVY-LSWEALCK--FTPLYYFDTSGYAFTYP--LARIFGCRVICYTHYPTISLDMISRVREGSSMYNNNASIAQS 197 (380)
Q Consensus 123 ~~~~~~~~-~~~~~l~~--~~pDi~~~~~~~~~~~~--l~~~~~~p~v~~~H~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (380)
...+..+. ...+.+++ .+|||+|++...+.... +++..++|+|.+.|..... . .+...+.. + .
T Consensus 94 ~~~~~~~~~~l~~~~~~~~~~~DvIH~h~~~~~~~~~~~~~~~~~p~V~t~H~~~~~--~-----~~~~~~~~--~-~-- 161 (439)
T TIGR02472 94 WPYLDELADNLLQHLRQQGHLPDLIHAHYADAGYVGARLSRLLGVPLIFTGHSLGRE--K-----RRRLLAAG--L-K-- 161 (439)
T ss_pred hhhHHHHHHHHHHHHHHcCCCCCEEEEcchhHHHHHHHHHHHhCCCEEEecccccch--h-----hhhcccCC--C-C--
Confidence 11100010 11223443 36998876543322222 2345689999999953211 0 00000000 0 0
Q ss_pred chhhhhHHHHHH-HHHHHHHHHhcCCCEEEEcCHHHHHHH-HHHhCC-CCceEEecCCCCCCCCCCCCCC----------
Q 016925 198 NWLSQCKIVYYT-FFSWMYGLVGSCADLAMVNSSWTQSHI-EKLWGI-PDRIKRVYPPCDTSGLQVLPLE---------- 264 (380)
Q Consensus 198 ~~~~~~~~~~~~-~~~~l~~~~~~~ad~ii~~S~~~~~~i-~~~~~~-~~k~~vi~~gvd~~~~~~~~~~---------- 264 (380)
.......|+. .....++..++.+|.|||+|+...++. ....+. ++++.+||||+|++.|.+....
T Consensus 162 --~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~s~~~~~~~~~~~~~~~~~ki~vIpnGvd~~~f~~~~~~~~~~~~~~~~ 239 (439)
T TIGR02472 162 --PQQIEKQYNISRRIEAEEETLAHASLVITSTHQEIEEQYALYDSYQPERMQVIPPGVDLSRFYPPQSSEETSEIDNLL 239 (439)
T ss_pred --hhhhhhhcchHHHHHHHHHHHHhCCEEEECCHHHHHHHHHhccCCCccceEEECCCcChhhcCCCCccccchhHHHHH
Confidence 0001111110 001245677889999999987554433 332233 4689999999998877653211
Q ss_pred ----CCCCCCEEEEEecCCCccChHHHHHHHHHHHHHccCCCCCCeEE-EEcCCCCCCC-----HHHHHHHHHHHHhcCC
Q 016925 265 ----RSTEYPAIISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQ-FVGSCRNKSD-----EERLQSLKDKSIELKV 334 (380)
Q Consensus 265 ----~~~~~~~il~VGRl~p~K~~d~li~A~~~l~~~~~~~~~~~~Lv-IvG~g~~~~~-----~~~~~~L~~la~~lgl 334 (380)
..+++++|+++||+.++||++.+|+|++.+.+.. ++.+++ |+|+++.... .++.+++++++.++++
T Consensus 240 ~~~~~~~~~~~i~~vGrl~~~Kg~~~li~A~~~l~~~~----~~~~l~li~G~g~~~~~l~~~~~~~~~~~~~~~~~~~l 315 (439)
T TIGR02472 240 APFLKDPEKPPILAISRPDRRKNIPSLVEAYGRSPKLQ----EMANLVLVLGCRDDIRKMESQQREVLQKVLLLIDRYDL 315 (439)
T ss_pred HhhccccCCcEEEEEcCCcccCCHHHHHHHHHhChhhh----hhccEEEEeCCccccccccHHHHHHHHHHHHHHHHcCC
Confidence 0124578999999999999999999998753211 223443 5687643211 2345667888999999
Q ss_pred CCcEEEccCCCHHHHHHHHhhc----cEEEe-echhhHHHHH
Q 016925 335 DGNVEFYKNLLYRSVLTIFMHL----FVFTM-KWQLVYDEFL 371 (380)
Q Consensus 335 ~~~V~f~G~v~~~el~~ly~~a----~vf~~-~~~~~~~~~~ 371 (380)
.++|+|+|.+++++++++|+.| |+|++ ++.|.||--+
T Consensus 316 ~~~V~f~g~~~~~~~~~~~~~a~~~~Dv~v~pS~~E~fg~~~ 357 (439)
T TIGR02472 316 YGKVAYPKHHRPDDVPELYRLAARSRGIFVNPALTEPFGLTL 357 (439)
T ss_pred CceEEecCCCCHHHHHHHHHHHhhcCCEEecccccCCcccHH
Confidence 9999999999999999999987 89986 6789998544
No 19
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=99.89 E-value=4.9e-21 Score=184.61 Aligned_cols=260 Identities=16% Similarity=0.119 Sum_probs=177.3
Q ss_pred ECCCCCCCCChhHHHHHHHHHHHHhCCCceEEEEcCCCCCChhhHHHHHHhhcCccccCCCeEEEeccccccccCCCCcc
Q 016925 40 FHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYTGDHDAFPDSLLARAVDRFGVELLHPPKVVHLYRRKWIEESTYPRF 119 (380)
Q Consensus 40 ~~p~~~~~GG~ervl~~la~~L~~~g~~~~v~v~t~~~~~~~~~~~~~~~~~~g~~l~~~v~~v~l~~~~~~~~~~~~~~ 119 (380)
+.|.++ .||+|+++.+++++|+++| |+|++++..... . +.... .|+ +++.+.... ...+
T Consensus 3 ~~~~~~-~gG~e~~~~~l~~~L~~~g--~~v~v~~~~~~~-~----~~~~~-~~~------~~~~~~~~~---~~~~--- 61 (355)
T cd03819 3 VLPALE-SGGVERGTLELARALVERG--HRSLVASAGGRL-V----AELEA-EGS------RHIKLPFIS---KNPL--- 61 (355)
T ss_pred cchhhc-cCcHHHHHHHHHHHHHHcC--CEEEEEcCCCch-H----HHHHh-cCC------eEEEccccc---cchh---
Confidence 346665 4899999999999999998 788888754321 1 11111 122 223222100 0000
Q ss_pred ceehhhHhHHHHHHHHHHhcCCcEEEeCCCchhhHH-H-HhHhCCcEEEEEeCCcchhhHHHhhhccccccCCCcccccc
Q 016925 120 TMIGQSFGSVYLSWEALCKFTPLYYFDTSGYAFTYP-L-ARIFGCRVICYTHYPTISLDMISRVREGSSMYNNNASIAQS 197 (380)
Q Consensus 120 ~~~~~~~~~~~~~~~~l~~~~pDi~~~~~~~~~~~~-l-~~~~~~p~v~~~H~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (380)
.. +.......+.+++.+||+++.+........ + .+..++|+++++|.... .
T Consensus 62 ~~----~~~~~~l~~~~~~~~~dii~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~----------------------~- 114 (355)
T cd03819 62 RI----LLNVARLRRLIREEKVDIVHARSRAPAWSAYLAARRTRPPFVTTVHGFYS----------------------V- 114 (355)
T ss_pred hh----HHHHHHHHHHHHHcCCCEEEECCCchhHHHHHHHHhcCCCEEEEeCCchh----------------------h-
Confidence 01 111122234577889998775443322112 2 23457999988884321 0
Q ss_pred chhhhhHHHHHHHHHHHHHHHhcCCCEEEEcCHHHHHHHHHHhCC-CCceEEecCCCCCCCCCCCCCC------------
Q 016925 198 NWLSQCKIVYYTFFSWMYGLVGSCADLAMVNSSWTQSHIEKLWGI-PDRIKRVYPPCDTSGLQVLPLE------------ 264 (380)
Q Consensus 198 ~~~~~~~~~~~~~~~~l~~~~~~~ad~ii~~S~~~~~~i~~~~~~-~~k~~vi~~gvd~~~~~~~~~~------------ 264 (380)
.. +++...+.+|.++++|+.+++.+.+.++. .+++.+++||+|...+.+....
T Consensus 115 --~~------------~~~~~~~~~~~vi~~s~~~~~~~~~~~~~~~~k~~~i~ngi~~~~~~~~~~~~~~~~~~~~~~~ 180 (355)
T cd03819 115 --NF------------RYNAIMARGDRVIAVSNFIADHIRENYGVDPDRIRVIPRGVDLDRFDPGAVPPERILALAREWP 180 (355)
T ss_pred --HH------------HHHHHHHhcCEEEEeCHHHHHHHHHhcCCChhhEEEecCCccccccCccccchHHHHHHHHHcC
Confidence 00 11233467999999999999999877775 4689999999998766542210
Q ss_pred CCCCCCEEEEEecCCCccChHHHHHHHHHHHHHccCCCCCCeEEEEcCCCCCCCHHHHHHHHHHHHhcCCCCcEEEccCC
Q 016925 265 RSTEYPAIISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNL 344 (380)
Q Consensus 265 ~~~~~~~il~VGRl~p~K~~d~li~A~~~l~~~~~~~~~~~~LvIvG~g~~~~~~~~~~~L~~la~~lgl~~~V~f~G~v 344 (380)
...+.+.++++||++++||++.+++|+..+.+.. ++++|+|+|.+.. ...+.+.++++++++++.++|.|+|.
T Consensus 181 ~~~~~~~i~~~Gr~~~~Kg~~~li~~~~~l~~~~----~~~~l~ivG~~~~--~~~~~~~~~~~~~~~~~~~~v~~~g~- 253 (355)
T cd03819 181 LPKGKPVILLPGRLTRWKGQEVFIEALARLKKDD----PDVHLLIVGDAQG--RRFYYAELLELIKRLGLQDRVTFVGH- 253 (355)
T ss_pred CCCCceEEEEeeccccccCHHHHHHHHHHHHhcC----CCeEEEEEECCcc--cchHHHHHHHHHHHcCCcceEEEcCC-
Confidence 1234578999999999999999999999997653 7999999998753 33566788889999999999999999
Q ss_pred CHHHHHHHHhhccEEEee--chhhHHH
Q 016925 345 LYRSVLTIFMHLFVFTMK--WQLVYDE 369 (380)
Q Consensus 345 ~~~el~~ly~~a~vf~~~--~~~~~~~ 369 (380)
.+++.++|+.||+++++ +.|.||-
T Consensus 254 -~~~~~~~l~~ad~~i~ps~~~e~~~~ 279 (355)
T cd03819 254 -CSDMPAAYALADIVVSASTEPEAFGR 279 (355)
T ss_pred -cccHHHHHHhCCEEEecCCCCCCCch
Confidence 56899999999999985 5788884
No 20
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant. Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.
Probab=99.89 E-value=7e-21 Score=201.22 Aligned_cols=326 Identities=12% Similarity=0.086 Sum_probs=196.4
Q ss_pred hhcCCCCcEEEEECCCC------------CCCCChhHHHHHHHHHHHHhCCCceEEEEcCCCCCC--------hhhHHHH
Q 016925 28 NARRNRTTSVAFFHPNT------------NDGGGGERVLWCAVKAIQEESPDLDCIVYTGDHDAF--------PDSLLAR 87 (380)
Q Consensus 28 ~~~~~~~~~I~~~~p~~------------~~~GG~ervl~~la~~L~~~g~~~~v~v~t~~~~~~--------~~~~~~~ 87 (380)
|....++|.|+++..+. ...||.-.++.++|++|+++|--++|.++|...+.+ |.+.+..
T Consensus 163 ~~~~~~~~~I~liS~HG~~~~~~~elg~~~DtGGq~vYV~ELAraLa~~~gv~~Vdl~TR~~~~~~~~~~y~~p~e~~~~ 242 (1050)
T TIGR02468 163 DQQKEKKLYIVLISLHGLVRGENMELGRDSDTGGQVKYVVELARALGSMPGVYRVDLLTRQVSSPDVDWSYGEPTEMLTP 242 (1050)
T ss_pred hhcccCceEEEEEccccCccccCcccCCCCCCCChHHHHHHHHHHHHhCCCCCEEEEEeCCcCccccccccCCccccccc
Confidence 44556788999885322 224899999999999999985334899999643210 1111100
Q ss_pred H-Hhhc--CccccCCCeEEEeccccccccCCCCccceehhhHhHHHHH-HHHHHh--------------cCCcEEEeCCC
Q 016925 88 A-VDRF--GVELLHPPKVVHLYRRKWIEESTYPRFTMIGQSFGSVYLS-WEALCK--------------FTPLYYFDTSG 149 (380)
Q Consensus 88 ~-~~~~--g~~l~~~v~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~--------------~~pDi~~~~~~ 149 (380)
. .+.+ .....+++++++++..+- ...++... ++..+..|... .+.+.+ ..||++|.+..
T Consensus 243 ~~~~~~~~~~~~~~g~rIvRip~GP~--~~~l~Ke~-L~~~l~ef~d~~l~~~~~~~~~~~~~~~~~~~~~pDvIHaHyw 319 (1050)
T TIGR02468 243 RSSENDGDEMGESSGAYIIRIPFGPR--DKYIPKEE-LWPYIPEFVDGALSHIVNMSKVLGEQIGSGHPVWPYVIHGHYA 319 (1050)
T ss_pred cccccccccccCCCCeEEEEeccCCC--CCCcCHHH-HHHHHHHHHHHHHHHHHhhhhhhhhhhccccCCCCCEEEECcc
Confidence 0 0000 011224667777764321 00122221 12222211111 011111 13898886654
Q ss_pred chhhHH--HHhHhCCcEEEEEeCCcchhhHHHhhhccccccCCCccccccchhhhhHHHHHHHHHHHHHHHhcCCCEEEE
Q 016925 150 YAFTYP--LARIFGCRVICYTHYPTISLDMISRVREGSSMYNNNASIAQSNWLSQCKIVYYTFFSWMYGLVGSCADLAMV 227 (380)
Q Consensus 150 ~~~~~~--l~~~~~~p~v~~~H~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ad~ii~ 227 (380)
.+.... ++...++|.|.+.|+.-. +-...+...+....+ -+.. .+... .++ ..+..++..||.|||
T Consensus 320 ~sG~aa~~L~~~lgVP~V~T~HSLgr--~K~~~ll~~g~~~~~--~~~~--~y~~~----~Ri--~~Ee~~l~~Ad~VIa 387 (1050)
T TIGR02468 320 DAGDSAALLSGALNVPMVLTGHSLGR--DKLEQLLKQGRMSKE--EINS--TYKIM----RRI--EAEELSLDASEIVIT 387 (1050)
T ss_pred hHHHHHHHHHHhhCCCEEEECccchh--hhhhhhccccccccc--cccc--ccchH----HHH--HHHHHHHHhcCEEEE
Confidence 432222 344578999999996321 100000000000000 0000 00000 111 257788899999999
Q ss_pred cCHHHHHHHHHHhCC-----------------------CCceEEecCCCCCCCCCCCCCC--------------------
Q 016925 228 NSSWTQSHIEKLWGI-----------------------PDRIKRVYPPCDTSGLQVLPLE-------------------- 264 (380)
Q Consensus 228 ~S~~~~~~i~~~~~~-----------------------~~k~~vi~~gvd~~~~~~~~~~-------------------- 264 (380)
+|...++++.++|+. ..++.||+||+|++.|.+.+..
T Consensus 388 sT~qE~~eq~~lY~~~~~~~~~~~~~~~~~gv~~~g~~~~ri~VIPpGVD~~~F~P~~~~~~~~~~~~~~~~~~~~~~~~ 467 (1050)
T TIGR02468 388 STRQEIEEQWGLYDGFDVILERKLRARARRGVSCYGRFMPRMAVIPPGMEFSHIVPHDGDMDGETEGNEEHPAKPDPPIW 467 (1050)
T ss_pred eCHHHHHHHHHHhccCCchhhhhhhhhhcccccccccCCCCeEEeCCCCcHHHccCCCccccchhcccccccccccchhh
Confidence 999999887776641 1388999999999888763100
Q ss_pred -------CCCCCCEEEEEecCCCccChHHHHHHHHHHHHHccCCCCCCeEEEEcCCCCC-----CCHHHHHHHHHHHHhc
Q 016925 265 -------RSTEYPAIISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNK-----SDEERLQSLKDKSIEL 332 (380)
Q Consensus 265 -------~~~~~~~il~VGRl~p~K~~d~li~A~~~l~~~~~~~~~~~~LvIvG~g~~~-----~~~~~~~~L~~la~~l 332 (380)
..+++++|++|||+.|+||++.||+||+.+.+.. ..+++. +|+|+++.. ...++.++++++++++
T Consensus 468 ~~l~r~~~~pdkpvIL~VGRL~p~KGi~~LIeAf~~L~~l~--~~~nL~-LIiG~gdd~d~l~~~~~~~l~~L~~li~~l 544 (1050)
T TIGR02468 468 SEIMRFFTNPRKPMILALARPDPKKNITTLVKAFGECRPLR--ELANLT-LIMGNRDDIDEMSSGSSSVLTSVLKLIDKY 544 (1050)
T ss_pred HHHHhhcccCCCcEEEEEcCCccccCHHHHHHHHHHhHhhc--cCCCEE-EEEecCchhhhhhccchHHHHHHHHHHHHh
Confidence 0134579999999999999999999999986532 124665 467865321 1234567899999999
Q ss_pred CCCCcEEEccCCCHHHHHHHHhhc----cEEEe-echhhHHHHH
Q 016925 333 KVDGNVEFYKNLLYRSVLTIFMHL----FVFTM-KWQLVYDEFL 371 (380)
Q Consensus 333 gl~~~V~f~G~v~~~el~~ly~~a----~vf~~-~~~~~~~~~~ 371 (380)
++.++|.|+|++++++++++|+.| |+|++ ++.|.||-=+
T Consensus 545 gL~g~V~FlG~v~~edvp~lYr~Ad~s~DVFV~PS~~EgFGLvl 588 (1050)
T TIGR02468 545 DLYGQVAYPKHHKQSDVPDIYRLAAKTKGVFINPAFIEPFGLTL 588 (1050)
T ss_pred CCCCeEEecCCCCHHHHHHHHHHhhhcCCeeeCCcccCCCCHHH
Confidence 999999999999999999999988 59996 7899999543
No 21
>cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.89 E-value=7.3e-21 Score=183.80 Aligned_cols=273 Identities=14% Similarity=0.089 Sum_probs=168.4
Q ss_pred EEEEECCC--CCCCCChhHHHHHHHHHHHHhCCCceEEEEcCCCCCChhhHHHHHHhhcCccccCCCeEEEecccccccc
Q 016925 36 SVAFFHPN--TNDGGGGERVLWCAVKAIQEESPDLDCIVYTGDHDAFPDSLLARAVDRFGVELLHPPKVVHLYRRKWIEE 113 (380)
Q Consensus 36 ~I~~~~p~--~~~~GG~ervl~~la~~L~~~g~~~~v~v~t~~~~~~~~~~~~~~~~~~g~~l~~~v~~v~l~~~~~~~~ 113 (380)
||+++... ....||+|+++.+++++|+++| |+|.+++........ . ...++++++.++....
T Consensus 1 ~i~~i~~~~~~~~~gG~~~~~~~la~~L~~~g--~~v~v~~~~~~~~~~---~--------~~~~~i~~~~~~~~~~--- 64 (363)
T cd04955 1 KIAIIGTRGIPAKYGGFETFVEELAPRLVARG--HEVTVYCRSPYPKQK---E--------TEYNGVRLIHIPAPEI--- 64 (363)
T ss_pred CeEEEecCcCCcccCcHHHHHHHHHHHHHhcC--CCEEEEEccCCCCCc---c--------cccCCceEEEcCCCCc---
Confidence 57777543 3456999999999999999999 667777654321110 0 0112334454432110
Q ss_pred CCCCccceehhhHhHHHHHHHHH-HhcCCcEEEeCCCch-hhHHHHhHhCCcEEEEEeCCcchhhHHHhhhccccccCCC
Q 016925 114 STYPRFTMIGQSFGSVYLSWEAL-CKFTPLYYFDTSGYA-FTYPLARIFGCRVICYTHYPTISLDMISRVREGSSMYNNN 191 (380)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~l-~~~~pDi~~~~~~~~-~~~~l~~~~~~p~v~~~H~p~~~~~~~~~~~~~~~~~~~~ 191 (380)
... ......+...+..+ .+.++|+++...... ...++++..+.|.++++|..... ..
T Consensus 65 ~~~------~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~v~~~h~~~~~---------------~~ 123 (363)
T cd04955 65 GGL------GTIIYDILAILHALFVKRDIDHVHALGPAIAPFLPLLRLKGKKVVVNMDGLEWK---------------RA 123 (363)
T ss_pred cch------hhhHHHHHHHHHHHhccCCeEEEEecCccHHHHHHHHHhcCCCEEEEccCccee---------------ec
Confidence 000 00000111112222 233445444322211 11123334578999988854321 00
Q ss_pred ccccccchhhhhHHHHHHHHHHHHHHHhcCCCEEEEcCHHHHHHHHHHhCCCCceEEecCCCCCCCCCC-CCC---CCCC
Q 016925 192 ASIAQSNWLSQCKIVYYTFFSWMYGLVGSCADLAMVNSSWTQSHIEKLWGIPDRIKRVYPPCDTSGLQV-LPL---ERST 267 (380)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ad~ii~~S~~~~~~i~~~~~~~~k~~vi~~gvd~~~~~~-~~~---~~~~ 267 (380)
.+.... ...+..+++...+.+|.++++|+.+++.+.+.++.. ..+|+||+|...+.+ ... ....
T Consensus 124 ------~~~~~~----~~~~~~~~~~~~~~ad~ii~~s~~~~~~~~~~~~~~--~~~i~ngv~~~~~~~~~~~~~~~~~~ 191 (363)
T cd04955 124 ------KWGRPA----KRYLKFGEKLAVKFADRLIADSPGIKEYLKEKYGRD--STYIPYGADHVVSSEEDEILKKYGLE 191 (363)
T ss_pred ------ccccch----hHHHHHHHHHHHhhccEEEeCCHHHHHHHHHhcCCC--CeeeCCCcChhhcchhhhhHHhcCCC
Confidence 000111 122334556677899999999999999998777753 279999999765443 100 0112
Q ss_pred CCCEEEEEecCCCccChHHHHHHHHHHHHHccCCCCCCeEEEEcCCCCCCCHHHHHHHHHHHH-hcCCCCcEEEccCCCH
Q 016925 268 EYPAIISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSI-ELKVDGNVEFYKNLLY 346 (380)
Q Consensus 268 ~~~~il~VGRl~p~K~~d~li~A~~~l~~~~~~~~~~~~LvIvG~g~~~~~~~~~~~L~~la~-~lgl~~~V~f~G~v~~ 346 (380)
++++++++||+.+.||++.+++|++.+. ++++|+|+|++.. .. ++++.++ ++++.++|+|+|.+++
T Consensus 192 ~~~~i~~~G~~~~~Kg~~~li~a~~~l~-------~~~~l~ivG~~~~--~~----~~~~~~~~~~~~~~~V~~~g~~~~ 258 (363)
T cd04955 192 PGRYYLLVGRIVPENNIDDLIEAFSKSN-------SGKKLVIVGNADH--NT----PYGKLLKEKAAADPRIIFVGPIYD 258 (363)
T ss_pred CCcEEEEEecccccCCHHHHHHHHHhhc-------cCceEEEEcCCCC--cc----hHHHHHHHHhCCCCcEEEccccCh
Confidence 3568999999999999999999999773 4799999998742 22 2333333 6788999999999999
Q ss_pred HHHHHHHhhccEEEee-ch-hhHHHH
Q 016925 347 RSVLTIFMHLFVFTMK-WQ-LVYDEF 370 (380)
Q Consensus 347 ~el~~ly~~a~vf~~~-~~-~~~~~~ 370 (380)
+++.++|++||+++++ .. |.||-=
T Consensus 259 ~~~~~~~~~ad~~v~ps~~~e~~~~~ 284 (363)
T cd04955 259 QELLELLRYAALFYLHGHSVGGTNPS 284 (363)
T ss_pred HHHHHHHHhCCEEEeCCccCCCCChH
Confidence 9999999999998874 34 777753
No 22
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=99.89 E-value=2.9e-21 Score=188.04 Aligned_cols=263 Identities=14% Similarity=0.159 Sum_probs=171.7
Q ss_pred cEEEEECCCCCCCCChhHHHHHHHHHHHHhCCCceEEEEcCCCCCChhhHHHHHHhhcCccccCCCeEEEeccccccccC
Q 016925 35 TSVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYTGDHDAFPDSLLARAVDRFGVELLHPPKVVHLYRRKWIEES 114 (380)
Q Consensus 35 ~~I~~~~p~~~~~GG~ervl~~la~~L~~~g~~~~v~v~t~~~~~~~~~~~~~~~~~~g~~l~~~v~~v~l~~~~~~~~~ 114 (380)
|||+++.+.....||+|+++.+++++|+++|+++++++++....... ...+. .++... .....+.
T Consensus 1 mkI~~~~~~~~~~GG~e~~~~~l~~~L~~~~~g~~v~v~~~~~~~~~-~~~~~----~~~~~~--~~~~~~~-------- 65 (359)
T PRK09922 1 MKIAFIGEAVSGFGGMETVISNVINTFEESKINCEMFFFCRNDKMDK-AWLKE----IKYAQS--FSNIKLS-------- 65 (359)
T ss_pred CeeEEecccccCCCchhHHHHHHHHHhhhcCcceeEEEEecCCCCCh-HHHHh----cchhcc--cccchhh--------
Confidence 89999999886669999999999999999966688888875432111 11111 111000 0000000
Q ss_pred CCCccceehhhHhHHHHHHHHHHhcCCcEEEeCCCchhhHH-HH-hHhC--CcEEEEEeCCcchhhHHHhhhccccccCC
Q 016925 115 TYPRFTMIGQSFGSVYLSWEALCKFTPLYYFDTSGYAFTYP-LA-RIFG--CRVICYTHYPTISLDMISRVREGSSMYNN 190 (380)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~l~~~~pDi~~~~~~~~~~~~-l~-~~~~--~p~v~~~H~p~~~~~~~~~~~~~~~~~~~ 190 (380)
.+.. . ... ....+.+++.+||+++++...+.... ++ +..+ .+++.+.|....
T Consensus 66 ~~~~---~-~~~---~~l~~~l~~~~~Dii~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~----------------- 121 (359)
T PRK09922 66 FLRR---A-KHV---YNFSKWLKETQPDIVICIDVISCLYANKARKKSGKQFKIFSWPHFSLD----------------- 121 (359)
T ss_pred hhcc---c-HHH---HHHHHHHHhcCCCEEEEcCHHHHHHHHHHHHHhCCCCeEEEEecCccc-----------------
Confidence 0000 0 011 11234578899998876643332211 22 2334 344555563210
Q ss_pred CccccccchhhhhHHHHHHHHHHHHHHHhcCCCEEEEcCHHHHHHHHHHhCCCCceEEecCCCCCCCCCCCCCCCCCCCC
Q 016925 191 NASIAQSNWLSQCKIVYYTFFSWMYGLVGSCADLAMVNSSWTQSHIEKLWGIPDRIKRVYPPCDTSGLQVLPLERSTEYP 270 (380)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ad~ii~~S~~~~~~i~~~~~~~~k~~vi~~gvd~~~~~~~~~~~~~~~~ 270 (380)
... ... . ...+.+|.++++|+.+++.+.+.....+++.++|||+|.+.+..... ...+++
T Consensus 122 -----~~~-~~~-------~------~~~~~~d~~i~~S~~~~~~~~~~~~~~~ki~vi~N~id~~~~~~~~~-~~~~~~ 181 (359)
T PRK09922 122 -----HKK-HAE-------C------KKITCADYHLAISSGIKEQMMARGISAQRISVIYNPVEIKTIIIPPP-ERDKPA 181 (359)
T ss_pred -----ccc-hhh-------h------hhhhcCCEEEEcCHHHHHHHHHcCCCHHHEEEEcCCCCHHHccCCCc-ccCCCc
Confidence 000 000 0 01257999999999999999875322468999999999654432111 112467
Q ss_pred EEEEEecCC--CccChHHHHHHHHHHHHHccCCCCCCeEEEEcCCCCCCCHHHHHHHHHHHHhcCCCCcEEEccCCC--H
Q 016925 271 AIISVAQFR--PEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLL--Y 346 (380)
Q Consensus 271 ~il~VGRl~--p~K~~d~li~A~~~l~~~~~~~~~~~~LvIvG~g~~~~~~~~~~~L~~la~~lgl~~~V~f~G~v~--~ 346 (380)
.++++||+. ++||++.+++|++.+. ++++|+|+|+|+. .+++++++++++++++|.|+|+++ .
T Consensus 182 ~i~~~Grl~~~~~k~~~~l~~a~~~~~-------~~~~l~ivG~g~~------~~~l~~~~~~~~l~~~v~f~G~~~~~~ 248 (359)
T PRK09922 182 VFLYVGRLKFEGQKNVKELFDGLSQTT-------GEWQLHIIGDGSD------FEKCKAYSRELGIEQRIIWHGWQSQPW 248 (359)
T ss_pred EEEEEEEEecccCcCHHHHHHHHHhhC-------CCeEEEEEeCCcc------HHHHHHHHHHcCCCCeEEEecccCCcH
Confidence 899999996 5699999999999772 4799999998742 468999999999999999999874 4
Q ss_pred HHHHHHHhhccEEEe-echhhHHH
Q 016925 347 RSVLTIFMHLFVFTM-KWQLVYDE 369 (380)
Q Consensus 347 ~el~~ly~~a~vf~~-~~~~~~~~ 369 (380)
++++++|+.||+|++ +..|.||-
T Consensus 249 ~~~~~~~~~~d~~v~~s~~Egf~~ 272 (359)
T PRK09922 249 EVVQQKIKNVSALLLTSKFEGFPM 272 (359)
T ss_pred HHHHHHHhcCcEEEECCcccCcCh
Confidence 889999999999997 55688874
No 23
>PLN02316 synthase/transferase
Probab=99.89 E-value=1.1e-20 Score=200.34 Aligned_cols=291 Identities=12% Similarity=0.044 Sum_probs=183.1
Q ss_pred cCCCCcEEEEECCCCC---CCCChhHHHHHHHHHHHHhCCCceEEEEcCCCCCChhhHHHHHHh--hcC--c-------c
Q 016925 30 RRNRTTSVAFFHPNTN---DGGGGERVLWCAVKAIQEESPDLDCIVYTGDHDAFPDSLLARAVD--RFG--V-------E 95 (380)
Q Consensus 30 ~~~~~~~I~~~~p~~~---~~GG~ervl~~la~~L~~~g~~~~v~v~t~~~~~~~~~~~~~~~~--~~g--~-------~ 95 (380)
.+..+|+|+++..-.. ..||..-++.+|+++|++.| |+|.|+|..++.-.......... .++ . .
T Consensus 583 ~~~~pM~Il~VSsE~~P~aKvGGLgDVV~sLp~ALa~~G--h~V~VitP~Y~~i~~~~~~~~~~~~~~~~~~~~~~v~~~ 660 (1036)
T PLN02316 583 AKEPPMHIVHIAVEMAPIAKVGGLGDVVTSLSRAVQDLN--HNVDIILPKYDCLNLSHVKDLHYQRSYSWGGTEIKVWFG 660 (1036)
T ss_pred CCCCCcEEEEEEcccCCCCCcCcHHHHHHHHHHHHHHcC--CEEEEEecCCcccchhhcccceEEEEeccCCEEEEEEEE
Confidence 4567899999963332 25899999999999999999 77888887653110000000000 000 0 0
Q ss_pred ccCCCeEEEeccc-cccc-cCCCCccceehhhHhHHHH-HHHHHH--hcCCcEEEeCCCchhhHH-HHh-------HhCC
Q 016925 96 LLHPPKVVHLYRR-KWIE-ESTYPRFTMIGQSFGSVYL-SWEALC--KFTPLYYFDTSGYAFTYP-LAR-------IFGC 162 (380)
Q Consensus 96 l~~~v~~v~l~~~-~~~~-~~~~~~~~~~~~~~~~~~~-~~~~l~--~~~pDi~~~~~~~~~~~~-l~~-------~~~~ 162 (380)
..++++++.+... .+.. ...|...... ..+..|-. ..+.++ ..+|||+|++...+...| +++ ..++
T Consensus 661 ~~~GV~vyfl~~~~~~F~r~~~Yg~~Dd~-~RF~~F~~Aale~l~~~~~~PDIIHaHDW~talva~llk~~~~~~~~~~~ 739 (1036)
T PLN02316 661 KVEGLSVYFLEPQNGMFWAGCVYGCRNDG-ERFGFFCHAALEFLLQSGFHPDIIHCHDWSSAPVAWLFKDHYAHYGLSKA 739 (1036)
T ss_pred EECCcEEEEEeccccccCCCCCCCchhHH-HHHHHHHHHHHHHHHhcCCCCCEEEECCChHHHHHHHHHHhhhhhccCCC
Confidence 0123444444321 0110 0111100000 00100000 112222 357999887766544444 222 1357
Q ss_pred cEEEEEeCCcchhhHHHhhhccccccCCCccccccchhhhhHHHHHHHHHHHHHHHhcCCCEEEEcCHHHHHHHHHHhCC
Q 016925 163 RVICYTHYPTISLDMISRVREGSSMYNNNASIAQSNWLSQCKIVYYTFFSWMYGLVGSCADLAMVNSSWTQSHIEKLWGI 242 (380)
Q Consensus 163 p~v~~~H~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ad~ii~~S~~~~~~i~~~~~~ 242 (380)
|+|.++|.... . ...+ +..+..||.|+|+|+..++++...+..
T Consensus 740 p~V~TiHnl~~---------------~----------~n~l------------k~~l~~AD~ViTVS~tya~EI~~~~~l 782 (1036)
T PLN02316 740 RVVFTIHNLEF---------------G----------ANHI------------GKAMAYADKATTVSPTYSREVSGNSAI 782 (1036)
T ss_pred CEEEEeCCccc---------------c----------hhHH------------HHHHHHCCEEEeCCHHHHHHHHhccCc
Confidence 99999994321 0 0001 123467999999999999998775432
Q ss_pred ---CCceEEecCCCCCCCCCCCCC---------------------------C-CCCCCCEEEEEecCCCccChHHHHHHH
Q 016925 243 ---PDRIKRVYPPCDTSGLQVLPL---------------------------E-RSTEYPAIISVAQFRPEKAHPLQLEAF 291 (380)
Q Consensus 243 ---~~k~~vi~~gvd~~~~~~~~~---------------------------~-~~~~~~~il~VGRl~p~K~~d~li~A~ 291 (380)
..++.+|+||+|.+.|.+... . ...+.+.|++||||+++||++.|++|+
T Consensus 783 ~~~~~Kl~vI~NGID~~~w~P~tD~~lp~~y~~~~~~~gK~~~k~~Lr~~lGL~~~d~plVg~VGRL~~qKGvdlLi~Al 862 (1036)
T PLN02316 783 APHLYKFHGILNGIDPDIWDPYNDNFIPVPYTSENVVEGKRAAKEALQQRLGLKQADLPLVGIITRLTHQKGIHLIKHAI 862 (1036)
T ss_pred ccccCCEEEEECCccccccCCcccccccccCCchhhhhhhhhhHHHHHHHhCCCcccCeEEEEEeccccccCHHHHHHHH
Confidence 368999999999876654210 0 002457999999999999999999999
Q ss_pred HHHHHHccCCCCCCeEEEEcCCCCCCCHHHHHHHHHHHHhcCC--CCcEEEccCCCHHHHHHHHhhccEEEe-echhhHH
Q 016925 292 SVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKV--DGNVEFYKNLLYRSVLTIFMHLFVFTM-KWQLVYD 368 (380)
Q Consensus 292 ~~l~~~~~~~~~~~~LvIvG~g~~~~~~~~~~~L~~la~~lgl--~~~V~f~G~v~~~el~~ly~~a~vf~~-~~~~~~~ 368 (380)
..+.+ ++.+|+|+|+|+. .++.++++++++++++ +++|.|.|..++.....+|+.||+|+| +..|+||
T Consensus 863 ~~ll~------~~~qlVIvG~Gpd---~~~e~~l~~La~~Lg~~~~~rV~f~g~~de~lah~iyaaADiflmPS~~EP~G 933 (1036)
T PLN02316 863 WRTLE------RNGQVVLLGSAPD---PRIQNDFVNLANQLHSSHHDRARLCLTYDEPLSHLIYAGADFILVPSIFEPCG 933 (1036)
T ss_pred HHHhh------cCcEEEEEeCCCC---HHHHHHHHHHHHHhCccCCCeEEEEecCCHHHHHHHHHhCcEEEeCCcccCcc
Confidence 99864 5799999998853 4567899999999976 689999988765444589999999997 6789998
Q ss_pred H
Q 016925 369 E 369 (380)
Q Consensus 369 ~ 369 (380)
-
T Consensus 934 L 934 (1036)
T PLN02316 934 L 934 (1036)
T ss_pred H
Confidence 5
No 24
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.89 E-value=1.7e-20 Score=180.72 Aligned_cols=268 Identities=13% Similarity=0.066 Sum_probs=175.9
Q ss_pred EEEEECCCCCC-CCChhHHHHHHHHHHHHhCCCceEEEEcCCCCCChhhHHHHHHhhcCccccCCCeEEEeccccccccC
Q 016925 36 SVAFFHPNTND-GGGGERVLWCAVKAIQEESPDLDCIVYTGDHDAFPDSLLARAVDRFGVELLHPPKVVHLYRRKWIEES 114 (380)
Q Consensus 36 ~I~~~~p~~~~-~GG~ervl~~la~~L~~~g~~~~v~v~t~~~~~~~~~~~~~~~~~~g~~l~~~v~~v~l~~~~~~~~~ 114 (380)
||+.+.++... .||+|+++.+++++|.+.| |+|.+++........ +... .+.++..++.. ....
T Consensus 1 kil~i~~~~~p~~gG~~~~~~~l~~~L~~~g--~~v~v~~~~~~~~~~---~~~~--------~~~~~~~~~~~--~~~~ 65 (357)
T cd03795 1 RVLHVGKFYPPDRGGIEQVIRDLAEGLAARG--IEVAVLCASPEPKGR---DEER--------NGHRVIRAPSL--LNVA 65 (357)
T ss_pred CeeEecCCCCCCCCcHHHHHHHHHHHHHhCC--CceEEEecCCCCcch---hhhc--------cCceEEEeecc--cccc
Confidence 46666665543 6999999999999999998 666677654321110 1100 11122332210 0000
Q ss_pred CCCccceehhhHhHHHHHHHHHHhcCCcEEEeCCCchhhHH-HHh-HhCCcEEEEEeCCcchhhHHHhhhccccccCCCc
Q 016925 115 TYPRFTMIGQSFGSVYLSWEALCKFTPLYYFDTSGYAFTYP-LAR-IFGCRVICYTHYPTISLDMISRVREGSSMYNNNA 192 (380)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~l~~~~pDi~~~~~~~~~~~~-l~~-~~~~p~v~~~H~p~~~~~~~~~~~~~~~~~~~~~ 192 (380)
..+ .... +...+. +...+||+++.+........ ... ..+.|.+.+.|.....
T Consensus 66 ~~~---~~~~----~~~~~~-~~~~~~Dii~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~------------------ 119 (357)
T cd03795 66 STP---FSPS----FFKQLK-KLAKKADVIHLHFPNPLADLALLLLPRKKPVVVHWHSDIVK------------------ 119 (357)
T ss_pred ccc---ccHH----HHHHHH-hcCCCCCEEEEecCcchHHHHHHHhccCceEEEEEcChhhc------------------
Confidence 111 0011 011111 45678997664333222111 111 2467888888843210
Q ss_pred cccccchhhhhHHHHHHHHHHHHHHHhcCCCEEEEcCHHHHHHHHHHhCCCCceEEecCCCCCCCCCCCCC------CCC
Q 016925 193 SIAQSNWLSQCKIVYYTFFSWMYGLVGSCADLAMVNSSWTQSHIEKLWGIPDRIKRVYPPCDTSGLQVLPL------ERS 266 (380)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ad~ii~~S~~~~~~i~~~~~~~~k~~vi~~gvd~~~~~~~~~------~~~ 266 (380)
. . .....+..+++.+.+.+|.++++|+..++.+...+....++.+++||+|...+.+... ...
T Consensus 120 ---~----~----~~~~~~~~~~~~~~~~~d~vi~~s~~~~~~~~~~~~~~~~~~~i~~gi~~~~~~~~~~~~~~~~~~~ 188 (357)
T cd03795 120 ---Q----K----LLLKLYRPLQRRFLRRADAIVATSPNYAETSPVLRRFRDKVRVIPLGLDPARYPRPDALEEAIWRRA 188 (357)
T ss_pred ---c----c----hhhhhhhHHHHHHHHhcCEEEeCcHHHHHHHHHhcCCccceEEecCCCChhhcCCcchhhhHhhcCC
Confidence 0 0 0112233445667789999999999999988776654568899999999876654321 112
Q ss_pred CCCCEEEEEecCCCccChHHHHHHHHHHHHHccCCCCCCeEEEEcCCCCCCCHHHHHHHHHHHHhcCCCCcEEEccCCCH
Q 016925 267 TEYPAIISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLY 346 (380)
Q Consensus 267 ~~~~~il~VGRl~p~K~~d~li~A~~~l~~~~~~~~~~~~LvIvG~g~~~~~~~~~~~L~~la~~lgl~~~V~f~G~v~~ 346 (380)
.+++.++++||+.+.||++.+++|+.++ .+++|+|+|+|. ..+.++++++++++.++|+|+|++++
T Consensus 189 ~~~~~i~~~G~~~~~K~~~~li~a~~~l--------~~~~l~i~G~g~------~~~~~~~~~~~~~~~~~V~~~g~v~~ 254 (357)
T cd03795 189 AGRPFFLFVGRLVYYKGLDVLLEAAAAL--------PDAPLVIVGEGP------LEAELEALAAALGLLDRVRFLGRLDD 254 (357)
T ss_pred CCCcEEEEecccccccCHHHHHHHHHhc--------cCcEEEEEeCCh------hHHHHHHHHHhcCCcceEEEcCCCCH
Confidence 3468999999999999999999999987 379999999873 34678999999999999999999999
Q ss_pred HHHHHHHhhccEEEeec---hhhHHH
Q 016925 347 RSVLTIFMHLFVFTMKW---QLVYDE 369 (380)
Q Consensus 347 ~el~~ly~~a~vf~~~~---~~~~~~ 369 (380)
+++..+|+.||+++++. .|.||-
T Consensus 255 ~~~~~~~~~ad~~i~ps~~~~e~~g~ 280 (357)
T cd03795 255 EEKAALLAACDVFVFPSVERSEAFGI 280 (357)
T ss_pred HHHHHHHHhCCEEEeCCcccccccch
Confidence 99999999999999864 588884
No 25
>PRK00654 glgA glycogen synthase; Provisional
Probab=99.88 E-value=1.5e-20 Score=189.34 Aligned_cols=305 Identities=15% Similarity=0.065 Sum_probs=179.1
Q ss_pred cEEEEECCCCC---CCCChhHHHHHHHHHHHHhCCCceEEEEcCCCCCChhhHHHHHHhh-----cCc----cccCCCeE
Q 016925 35 TSVAFFHPNTN---DGGGGERVLWCAVKAIQEESPDLDCIVYTGDHDAFPDSLLARAVDR-----FGV----ELLHPPKV 102 (380)
Q Consensus 35 ~~I~~~~p~~~---~~GG~ervl~~la~~L~~~g~~~~v~v~t~~~~~~~~~~~~~~~~~-----~g~----~l~~~v~~ 102 (380)
|||+++..-+. ..||.+.++.+++++|+++| |+|.|+|..++.-.+.. ...... +.+ ...+++++
T Consensus 1 m~i~~vs~e~~P~~k~GGl~~~v~~L~~~L~~~G--~~V~v~~p~y~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~gv~v 77 (466)
T PRK00654 1 MKILFVASECAPLIKTGGLGDVVGALPKALAALG--HDVRVLLPGYPAIREKL-RDAQVVGRLDLFTVLFGHLEGDGVPV 77 (466)
T ss_pred CeEEEEEcccccCcccCcHHHHHHHHHHHHHHCC--CcEEEEecCCcchhhhh-cCceEEEEeeeEEEEEEeEEcCCceE
Confidence 68888864421 25899999999999999999 77888886543111000 000000 000 01134555
Q ss_pred EEecccccccc-CCCCccceehhhHhHH-HHHHHHHH--hcCCcEEEeCCCchhhHH-HHh-H-----hCCcEEEEEeCC
Q 016925 103 VHLYRRKWIEE-STYPRFTMIGQSFGSV-YLSWEALC--KFTPLYYFDTSGYAFTYP-LAR-I-----FGCRVICYTHYP 171 (380)
Q Consensus 103 v~l~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~l~--~~~pDi~~~~~~~~~~~~-l~~-~-----~~~p~v~~~H~p 171 (380)
+.+........ ..|..... ...+..+ ....+.++ ..+|||+|++...+..++ +++ . .++|+|.++|..
T Consensus 78 ~~v~~~~~~~~~~~y~~~d~-~~r~~~f~~~~~~~~~~~~~~pDiiH~h~w~~~~~~~~l~~~~~~~~~~~~~v~TiH~~ 156 (466)
T PRK00654 78 YLIDAPHLFDRPSGYGYPDN-GERFAFFSWAAAEFAEGLDPRPDIVHAHDWHTGLIPALLKEKYWRGYPDIKTVFTIHNL 156 (466)
T ss_pred EEEeCHHHcCCCCCCCCcCh-HHHHHHHHHHHHHHHHhcCCCCceEEECCcHHHHHHHHHHHhhhccCCCCCEEEEcCCC
Confidence 65543222111 11111000 0000000 00112232 248999887765544344 222 2 268999999965
Q ss_pred cchh----hHHHhhhccccccCCCccccccchhhhhHHHHHHHHHHHHHHHhcCCCEEEEcCHHHHHHHHHH-h------
Q 016925 172 TISL----DMISRVREGSSMYNNNASIAQSNWLSQCKIVYYTFFSWMYGLVGSCADLAMVNSSWTQSHIEKL-W------ 240 (380)
Q Consensus 172 ~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ad~ii~~S~~~~~~i~~~-~------ 240 (380)
.... +.+..+. ....... ..... .+. . ..+.+...+.||.|+|+|+..++++.+. +
T Consensus 157 ~~~g~~~~~~~~~~~------~~~~~~~----~~~~~-~~~-~-~~~~~~~~~~ad~vitvS~~~~~ei~~~~~~~gl~~ 223 (466)
T PRK00654 157 AYQGLFPAEILGELG------LPAEAFH----LEGLE-FYG-Q-ISFLKAGLYYADRVTTVSPTYAREITTPEFGYGLEG 223 (466)
T ss_pred cCCCcCCHHHHHHcC------CChHHcC----chhhh-cCC-c-ccHHHHHHHhcCcCeeeCHHHHHHhccccCCcChHH
Confidence 3210 0000000 0000000 00000 000 0 1123456688999999999999988652 1
Q ss_pred --CC-CCceEEecCCCCCCCCCCCCCC---------------------------CCCCCCEEEEEecCCCccChHHHHHH
Q 016925 241 --GI-PDRIKRVYPPCDTSGLQVLPLE---------------------------RSTEYPAIISVAQFRPEKAHPLQLEA 290 (380)
Q Consensus 241 --~~-~~k~~vi~~gvd~~~~~~~~~~---------------------------~~~~~~~il~VGRl~p~K~~d~li~A 290 (380)
+. .+++.+|+||+|.+.|.+.... ...+.++++++||+.++||++.+++|
T Consensus 224 ~~~~~~~ki~vI~NGid~~~~~p~~~~~~~~~~~~~~~~~k~~~k~~l~~~~gl~~~~~~~i~~vGRl~~~KG~~~li~a 303 (466)
T PRK00654 224 LLRARSGKLSGILNGIDYDIWNPETDPLLAANYSADDLEGKAENKRALQERFGLPDDDAPLFAMVSRLTEQKGLDLVLEA 303 (466)
T ss_pred HHHhcccCceEecCCCCccccCCccCcccccccChhhhhchHHHHHHHHHHhCCCCCCCcEEEEeeccccccChHHHHHH
Confidence 12 4689999999998877652110 01246799999999999999999999
Q ss_pred HHHHHHHccCCCCCCeEEEEcCCCCCCCHHHHHHHHHHHHhcCCCCcEEE-ccCCCHHHHHHHHhhccEEEe-echhhHH
Q 016925 291 FSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEF-YKNLLYRSVLTIFMHLFVFTM-KWQLVYD 368 (380)
Q Consensus 291 ~~~l~~~~~~~~~~~~LvIvG~g~~~~~~~~~~~L~~la~~lgl~~~V~f-~G~v~~~el~~ly~~a~vf~~-~~~~~~~ 368 (380)
++++.+ .+++|+|+|+|. .++.+++++++++++ ++|.+ .|+ +++++..+|+.||+|++ +..|+||
T Consensus 304 ~~~l~~------~~~~lvivG~g~----~~~~~~l~~l~~~~~--~~v~~~~g~-~~~~~~~~~~~aDv~v~PS~~E~~g 370 (466)
T PRK00654 304 LPELLE------QGGQLVLLGTGD----PELEEAFRALAARYP--GKVGVQIGY-DEALAHRIYAGADMFLMPSRFEPCG 370 (466)
T ss_pred HHHHHh------cCCEEEEEecCc----HHHHHHHHHHHHHCC--CcEEEEEeC-CHHHHHHHHhhCCEEEeCCCCCCch
Confidence 999864 479999999863 346688999999986 45665 565 66667899999999997 6789998
Q ss_pred H
Q 016925 369 E 369 (380)
Q Consensus 369 ~ 369 (380)
-
T Consensus 371 l 371 (466)
T PRK00654 371 L 371 (466)
T ss_pred H
Confidence 3
No 26
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=99.88 E-value=1e-20 Score=187.88 Aligned_cols=283 Identities=11% Similarity=0.069 Sum_probs=171.7
Q ss_pred CcEEEEECCCCCCCCChhHHHHHHHHHHHHhCCCceEEEEcCCCCCChhhHHHHHHhhcCccccCCCeEEEecccccccc
Q 016925 34 TTSVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYTGDHDAFPDSLLARAVDRFGVELLHPPKVVHLYRRKWIEE 113 (380)
Q Consensus 34 ~~~I~~~~p~~~~~GG~ervl~~la~~L~~~g~~~~v~v~t~~~~~~~~~~~~~~~~~~g~~l~~~v~~v~l~~~~~~~~ 113 (380)
.+||+.+.... +|.|..+.+++++|+++| |+|++++..+....+ +.. ...+++++.+..... ..
T Consensus 3 ~~~~~~~~~~~---~~~~~R~~~~a~~L~~~G--~~V~ii~~~~~~~~~----~~~------~~~~v~~~~~~~~~~-~~ 66 (415)
T cd03816 3 RKRVCVLVLGD---IGRSPRMQYHALSLAKHG--WKVDLVGYLETPPHD----EIL------SNPNITIHPLPPPPQ-RL 66 (415)
T ss_pred ccEEEEEEecc---cCCCHHHHHHHHHHHhcC--ceEEEEEecCCCCCH----HHh------cCCCEEEEECCCCcc-cc
Confidence 46777665533 467777788999999999 777777754321111 100 112345555543210 00
Q ss_pred CCCCcc-ceehhhHhHHH-HHHHHHHhcCCcEEEeCCCchh--h-HH--HHhHhCCcEEEEEeCCcchhhHHHhhhcccc
Q 016925 114 STYPRF-TMIGQSFGSVY-LSWEALCKFTPLYYFDTSGYAF--T-YP--LARIFGCRVICYTHYPTISLDMISRVREGSS 186 (380)
Q Consensus 114 ~~~~~~-~~~~~~~~~~~-~~~~~l~~~~pDi~~~~~~~~~--~-~~--l~~~~~~p~v~~~H~p~~~~~~~~~~~~~~~ 186 (380)
...++. ......+..++ ..+..++..+||+++.+....+ . .. +++..++|+|.+.|..... .. . ..
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Dvi~~~~~~~~~~~~~a~~~~~~~~~~~V~~~h~~~~~-~~-~-~~---- 139 (415)
T cd03816 67 NKLPFLLFAPLKVLWQFFSLLWLLYKLRPADYILIQNPPSIPTLLIAWLYCLLRRTKLIIDWHNYGYT-IL-A-LK---- 139 (415)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEeCCCCchHHHHHHHHHHHhCCeEEEEcCCchHH-HH-h-cc----
Confidence 000000 00000000000 1122345668998664432221 1 11 2335689999988843211 00 0 00
Q ss_pred ccCCCccccccchhhhhHHHHHHHHHHHHHHHhcCCCEEEEcCHHHHHHHHHHhCC-CCceEEecCCCCCCCCCCCCCC-
Q 016925 187 MYNNNASIAQSNWLSQCKIVYYTFFSWMYGLVGSCADLAMVNSSWTQSHIEKLWGI-PDRIKRVYPPCDTSGLQVLPLE- 264 (380)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ad~ii~~S~~~~~~i~~~~~~-~~k~~vi~~gvd~~~~~~~~~~- 264 (380)
+ .. ... ..+++.++++...+.||.|||+|+.+++.+.+ ++. ++++.|||||.+ ..|.+.+..
T Consensus 140 -~------~~---~~~----~~~~~~~~e~~~~~~ad~ii~vS~~~~~~l~~-~~~~~~ki~vI~Ng~~-~~f~p~~~~~ 203 (415)
T cd03816 140 -L------GE---NHP----LVRLAKWYEKLFGRLADYNLCVTKAMKEDLQQ-FNNWKIRATVLYDRPP-EQFRPLPLEE 203 (415)
T ss_pred -c------CC---CCH----HHHHHHHHHHHHhhcCCEeeecCHHHHHHHHh-hhccCCCeeecCCCCH-HHceeCcHHH
Confidence 0 00 001 12345566778888999999999999999988 444 579999999843 334331100
Q ss_pred ------------------------CCCCCCEEEEEecCCCccChHHHHHHHHHHHHHcc--CCCCCCeEEEEcCCCCCCC
Q 016925 265 ------------------------RSTEYPAIISVAQFRPEKAHPLQLEAFSVALRKLD--ADLPRPRLQFVGSCRNKSD 318 (380)
Q Consensus 265 ------------------------~~~~~~~il~VGRl~p~K~~d~li~A~~~l~~~~~--~~~~~~~LvIvG~g~~~~~ 318 (380)
..++..+++++||+.++||++.+|+|++.+.+... ...||++|+|+|+|+.
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~grl~~~K~~~~li~A~~~l~~~~~~~~~~~~i~l~ivG~G~~--- 280 (415)
T cd03816 204 KHELFLKLAKTFLTRELRIGAVQLSEERPALLVSSTSWTPDEDFGILLDALVAYEKSAATGPKLPKLLCIITGKGPL--- 280 (415)
T ss_pred HHHHHHhccccccccccccccceecCCCceEEEEeccccCCCCHHHHHHHHHHHHHhhcccccCCCEEEEEEecCcc---
Confidence 01123478899999999999999999999865310 1137899999998742
Q ss_pred HHHHHHHHHHHHhcCCCCcEEEccCCCHHHHHHHHhhccEEEe
Q 016925 319 EERLQSLKDKSIELKVDGNVEFYKNLLYRSVLTIFMHLFVFTM 361 (380)
Q Consensus 319 ~~~~~~L~~la~~lgl~~~V~f~G~v~~~el~~ly~~a~vf~~ 361 (380)
.++++++++++|+++.+.|.|+++.++++++|+.||++++
T Consensus 281 ---~~~l~~~~~~~~l~~~~~~~g~~~~~~~~~~l~~aDv~v~ 320 (415)
T cd03816 281 ---KEKYLERIKELKLKKVTIRTPWLSAEDYPKLLASADLGVS 320 (415)
T ss_pred ---HHHHHHHHHHcCCCcEEEEcCcCCHHHHHHHHHhCCEEEE
Confidence 5789999999999876667789999999999999999985
No 27
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=99.87 E-value=1.7e-20 Score=179.42 Aligned_cols=251 Identities=13% Similarity=0.078 Sum_probs=166.1
Q ss_pred cEEEEECCCC-----CCCCChhHHHHHHHHHHHHhCCCceEEEEcCCCCCChhhHHHHHHhhcCccccCCCeEEEecccc
Q 016925 35 TSVAFFHPNT-----NDGGGGERVLWCAVKAIQEESPDLDCIVYTGDHDAFPDSLLARAVDRFGVELLHPPKVVHLYRRK 109 (380)
Q Consensus 35 ~~I~~~~p~~-----~~~GG~ervl~~la~~L~~~g~~~~v~v~t~~~~~~~~~~~~~~~~~~g~~l~~~v~~v~l~~~~ 109 (380)
|||+++.+++ ...||+|+++.+++++|.+.| |+|.+++...+...... .......
T Consensus 1 MkI~~i~~~~~~~~~~~~GG~~~~~~~l~~~L~~~g--~~V~v~~~~~~~~~~~~------------------~~~~~~~ 60 (335)
T cd03802 1 MRIALVAPPREPVPPPAYGGTERVVAALTEGLVARG--HEVTLFASGDSKTAAPL------------------VPVVPEP 60 (335)
T ss_pred CeEEEEcCCcccCCCcccCcHHHHHHHHHHHHHhcC--ceEEEEecCCCCcccce------------------eeccCCC
Confidence 7999998875 246999999999999999998 77888875432111000 0000000
Q ss_pred ccccCCCCccceehhhHhHHHHHHHHHHhcCCcEEEeCCCchhhHHHHhHhCCcEEEEEeCCcchhhHHHhhhccccccC
Q 016925 110 WIEESTYPRFTMIGQSFGSVYLSWEALCKFTPLYYFDTSGYAFTYPLARIFGCRVICYTHYPTISLDMISRVREGSSMYN 189 (380)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~pDi~~~~~~~~~~~~l~~~~~~p~v~~~H~p~~~~~~~~~~~~~~~~~~ 189 (380)
. ...... .............+.+++.+||+++++....... .++..++|.+++.|.....
T Consensus 61 ~--~~~~~~--~~~~~~~~~~~~~~~~~~~~~Divh~~~~~~~~~-~~~~~~~~~v~~~h~~~~~--------------- 120 (335)
T cd03802 61 L--RLDAPG--RDRAEAEALALAERALAAGDFDIVHNHSLHLPLP-FARPLPVPVVTTLHGPPDP--------------- 120 (335)
T ss_pred c--ccccch--hhHhhHHHHHHHHHHHhcCCCCEEEecCcccchh-hhcccCCCEEEEecCCCCc---------------
Confidence 0 000000 0000111111223456788899877554433222 3445678999999865421
Q ss_pred CCccccccchhhhhHHHHHHHHHHHHHHHhcCCCEEEEcCHHHHHHHHHHhCCCCceEEecCCCCCCCCCCCCCCCCCCC
Q 016925 190 NNASIAQSNWLSQCKIVYYTFFSWMYGLVGSCADLAMVNSSWTQSHIEKLWGIPDRIKRVYPPCDTSGLQVLPLERSTEY 269 (380)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ad~ii~~S~~~~~~i~~~~~~~~k~~vi~~gvd~~~~~~~~~~~~~~~ 269 (380)
. ... ........+.++++|+..++..... .++.+|+||+|++.|.+.+ .++
T Consensus 121 ------~---~~~------------~~~~~~~~~~~~~~s~~~~~~~~~~----~~~~vi~ngvd~~~~~~~~----~~~ 171 (335)
T cd03802 121 ------E---LLK------------LYYAARPDVPFVSISDAQRRPWPPL----PWVATVHNGIDLDDYPFRG----PKG 171 (335)
T ss_pred ------c---cch------------HHHhhCcCCeEEEecHHHHhhcccc----cccEEecCCcChhhCCCCC----CCC
Confidence 0 000 0123356789999999888765543 5788999999988776422 246
Q ss_pred CEEEEEecCCCccChHHHHHHHHHHHHHccCCCCCCeEEEEcCCCCCCCHHHHHHHHHHHHhcC-CCCcEEEccCCCHHH
Q 016925 270 PAIISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELK-VDGNVEFYKNLLYRS 348 (380)
Q Consensus 270 ~~il~VGRl~p~K~~d~li~A~~~l~~~~~~~~~~~~LvIvG~g~~~~~~~~~~~L~~la~~lg-l~~~V~f~G~v~~~e 348 (380)
+.++++||+.+.||++.+++|+.. .+++|+|+|++.. . +.+++.+++.. +.++|+|+|++++++
T Consensus 172 ~~i~~~Gr~~~~Kg~~~li~~~~~---------~~~~l~i~G~~~~---~---~~~~~~~~~~~~~~~~v~~~G~~~~~~ 236 (335)
T cd03802 172 DYLLFLGRISPEKGPHLAIRAARR---------AGIPLKLAGPVSD---P---DYFYREIAPELLDGPDIEYLGEVGGAE 236 (335)
T ss_pred CEEEEEEeeccccCHHHHHHHHHh---------cCCeEEEEeCCCC---H---HHHHHHHHHhcccCCcEEEeCCCCHHH
Confidence 799999999999999999998642 5799999998743 1 33444444443 679999999999999
Q ss_pred HHHHHhhccEEEee--chhhHHH
Q 016925 349 VLTIFMHLFVFTMK--WQLVYDE 369 (380)
Q Consensus 349 l~~ly~~a~vf~~~--~~~~~~~ 369 (380)
+..+|+.||+++++ |.|.||-
T Consensus 237 ~~~~~~~~d~~v~ps~~~E~~~~ 259 (335)
T cd03802 237 KAELLGNARALLFPILWEEPFGL 259 (335)
T ss_pred HHHHHHhCcEEEeCCcccCCcch
Confidence 99999999999986 4699985
No 28
>cd03809 GT1_mtfB_like This family is most closely related to the GT1 family of glycosyltransferases. mtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the previously synthesized polysaccharide.
Probab=99.87 E-value=1.6e-20 Score=180.70 Aligned_cols=277 Identities=17% Similarity=0.089 Sum_probs=177.3
Q ss_pred EEEEECCCCCC--CCChhHHHHHHHHHHHHhCCCceEEEEcCCCCCChhhHHHHHHhhcCccccCCCeEEEecccccccc
Q 016925 36 SVAFFHPNTND--GGGGERVLWCAVKAIQEESPDLDCIVYTGDHDAFPDSLLARAVDRFGVELLHPPKVVHLYRRKWIEE 113 (380)
Q Consensus 36 ~I~~~~p~~~~--~GG~ervl~~la~~L~~~g~~~~v~v~t~~~~~~~~~~~~~~~~~~g~~l~~~v~~v~l~~~~~~~~ 113 (380)
||++...++.. .||+|+++.+++++|++.|++ +++++...+..... ..... .. ..... . .
T Consensus 1 ~ili~~~~~~~~~~gG~~~~~~~l~~~L~~~~~~--v~~~~~~~~~~~~~--~~~~~--~~--------~~~~~--~--~ 62 (365)
T cd03809 1 RILIDARFLASRRPTGIGRYARELLRALLKLDPE--EVLLLLPGAPGLLL--LPLRA--AL--------RLLLR--L--P 62 (365)
T ss_pred CEEEechhhhcCCCCcHHHHHHHHHHHHHhcCCc--eEEEEecCcccccc--ccchh--cc--------ccccc--c--c
Confidence 57888777755 799999999999999999844 44554332111100 00000 00 00000 0 0
Q ss_pred CCCCccceehhhHhHHHHHHHHHHhcCCcEEEeCCCchhhHHHHhHhCCcEEEEEeCCcchhhHHHhhhccccccCCCcc
Q 016925 114 STYPRFTMIGQSFGSVYLSWEALCKFTPLYYFDTSGYAFTYPLARIFGCRVICYTHYPTISLDMISRVREGSSMYNNNAS 193 (380)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~l~~~~pDi~~~~~~~~~~~~l~~~~~~p~v~~~H~p~~~~~~~~~~~~~~~~~~~~~~ 193 (380)
... .................+.+||++++...... ..+..++|.+.++|..... . +.. .
T Consensus 63 ~~~----~~~~~~~~~~~~~~~~~~~~~Dii~~~~~~~~---~~~~~~~~~i~~~hd~~~~-~-----------~~~--~ 121 (365)
T cd03809 63 RRL----LWGLLFLLRAGDRLLLLLLGLDLLHSPHNTAP---LLRLRGVPVVVTIHDLIPL-R-----------FPE--Y 121 (365)
T ss_pred ccc----ccchhhHHHHHHHHHhhhcCCCeeeecccccC---cccCCCCCEEEEeccchhh-h-----------Ccc--c
Confidence 000 00001111111223345678998775544321 1134678999999943210 0 000 0
Q ss_pred ccccchhhhhHHHHHHHHHHHHHHHhcCCCEEEEcCHHHHHHHHHHhCC-CCceEEecCCCCCCCCCCCCC------CCC
Q 016925 194 IAQSNWLSQCKIVYYTFFSWMYGLVGSCADLAMVNSSWTQSHIEKLWGI-PDRIKRVYPPCDTSGLQVLPL------ERS 266 (380)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~ad~ii~~S~~~~~~i~~~~~~-~~k~~vi~~gvd~~~~~~~~~------~~~ 266 (380)
.. ......+..+++...+.+|.++++|+.+++.+.+.++. ..++.+++||+|...+..... ...
T Consensus 122 ------~~---~~~~~~~~~~~~~~~~~~d~~i~~s~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~ 192 (365)
T cd03809 122 ------FS---PGFRRYFRRLLRRALRRADAIITVSEATKRDLLRYLGVPPDKIVVIPLGVDPRFRPPPAEAEVLRALYL 192 (365)
T ss_pred ------CC---HHHHHHHHHHHHHHHHHcCEEEEccHHHHHHHHHHhCcCHHHEEeeccccCccccCCCchHHHHHHhcC
Confidence 00 00122344556777889999999999999999998874 468899999999776654321 112
Q ss_pred CCCCEEEEEecCCCccChHHHHHHHHHHHHHccCCCCCCeEEEEcCCCCCCCHHHHHHHHHHHHhcCCCCcEEEccCCCH
Q 016925 267 TEYPAIISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLY 346 (380)
Q Consensus 267 ~~~~~il~VGRl~p~K~~d~li~A~~~l~~~~~~~~~~~~LvIvG~g~~~~~~~~~~~L~~la~~lgl~~~V~f~G~v~~ 346 (380)
.++..++++||+++.||++.+++|+..+.+.. ++++|+++|.+... . +...+.++++++.++|+|+|.+++
T Consensus 193 ~~~~~i~~~G~~~~~K~~~~~l~~~~~~~~~~----~~~~l~i~G~~~~~-~----~~~~~~~~~~~~~~~v~~~g~~~~ 263 (365)
T cd03809 193 LPRPYFLYVGTIEPRKNLERLLEAFARLPAKG----PDPKLVIVGKRGWL-N----EELLARLRELGLGDRVRFLGYVSD 263 (365)
T ss_pred CCCCeEEEeCCCccccCHHHHHHHHHHHHHhc----CCCCEEEecCCccc-c----HHHHHHHHHcCCCCeEEECCCCCh
Confidence 34679999999999999999999999998764 68999999986432 1 233334477899999999999999
Q ss_pred HHHHHHHhhccEEEee-chhhHHH
Q 016925 347 RSVLTIFMHLFVFTMK-WQLVYDE 369 (380)
Q Consensus 347 ~el~~ly~~a~vf~~~-~~~~~~~ 369 (380)
+++.++|+.||+++++ ..|.||-
T Consensus 264 ~~~~~~~~~~d~~l~ps~~e~~~~ 287 (365)
T cd03809 264 EELAALYRGARAFVFPSLYEGFGL 287 (365)
T ss_pred hHHHHHHhhhhhhcccchhccCCC
Confidence 9999999999998864 5577663
No 29
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=99.87 E-value=5e-20 Score=185.94 Aligned_cols=311 Identities=14% Similarity=0.072 Sum_probs=182.9
Q ss_pred cEEEEECCCCC---CCCChhHHHHHHHHHHHHhCCCceEEEEcCCCCCChhhHHHH--HHhhcCcc-------------c
Q 016925 35 TSVAFFHPNTN---DGGGGERVLWCAVKAIQEESPDLDCIVYTGDHDAFPDSLLAR--AVDRFGVE-------------L 96 (380)
Q Consensus 35 ~~I~~~~p~~~---~~GG~ervl~~la~~L~~~g~~~~v~v~t~~~~~~~~~~~~~--~~~~~g~~-------------l 96 (380)
|||+++.+-.. ..||...++.+++++|+++| |+|.|++..++.-.....+. .....++. .
T Consensus 1 m~i~~vs~E~~P~~k~GGl~~~v~~L~~aL~~~G--~~v~v~~p~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (473)
T TIGR02095 1 MRVLFVAAEMAPFAKTGGLADVVGALPKALAALG--HDVRVLLPAYGCIEDEVDDQVKVVELVDLSVGPRTLYVKVFEGV 78 (473)
T ss_pred CeEEEEEeccccccCcCcHHHHHHHHHHHHHHcC--CeEEEEecCCcChhhhhccCeEEEEEEEEeecCceeEEEEEEEE
Confidence 78888864422 25999999999999999999 77888886553211110000 00000010 1
Q ss_pred cCCCeEEEecccccccc-C-CCC--ccceehhhHhHH-HHHHHHHH--hcCCcEEEeCCCchhhHH-HH-hHhC---CcE
Q 016925 97 LHPPKVVHLYRRKWIEE-S-TYP--RFTMIGQSFGSV-YLSWEALC--KFTPLYYFDTSGYAFTYP-LA-RIFG---CRV 164 (380)
Q Consensus 97 ~~~v~~v~l~~~~~~~~-~-~~~--~~~~~~~~~~~~-~~~~~~l~--~~~pDi~~~~~~~~~~~~-l~-~~~~---~p~ 164 (380)
.++++++.+......+. . .|. ......+. ..+ ....+.++ ..+|||+|++...+...+ +. ...+ +|.
T Consensus 79 ~~~v~~~~i~~~~~~~r~~~~y~~~~~d~~~r~-~~f~~a~~~~~~~~~~~~DiiH~hdw~~~~~~~~l~~~~~~~~~~~ 157 (473)
T TIGR02095 79 VEGVPVYFIDNPSLFDRPGGIYGDDYPDNAERF-AFFSRAAAELLSGLGWQPDVVHAHDWHTALVPALLKAVYRPNPIKT 157 (473)
T ss_pred ECCceEEEEECHHHcCCCCCCCCCCCCCHHHHH-HHHHHHHHHHHHhcCCCCCEEEECCcHHHHHHHHHHhhccCCCCCE
Confidence 13345554433211111 0 121 00011111 001 01112233 368999887765544444 22 2333 899
Q ss_pred EEEEeCCcchhhHHHhhhccccccCCCccccccchhhhhHHHHHHHHHHHHHHHhcCCCEEEEcCHHHHHHHHHH-hC--
Q 016925 165 ICYTHYPTISLDMISRVREGSSMYNNNASIAQSNWLSQCKIVYYTFFSWMYGLVGSCADLAMVNSSWTQSHIEKL-WG-- 241 (380)
Q Consensus 165 v~~~H~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ad~ii~~S~~~~~~i~~~-~~-- 241 (380)
|+++|........ +. ....... +... .......-+... ..+.+..++.||.++|+|+..++++.+. ++
T Consensus 158 v~TiH~~~~~g~~-~~---~~~~~~~---~~~~-~~~~~~~~~~~~-~~~~k~~~~~ad~v~tVS~~~~~ei~~~~~~~~ 228 (473)
T TIGR02095 158 VFTIHNLAYQGVF-PA---DDFSELG---LPPE-YFHMEGLEFYGR-VNFLKGGIVYADRVTTVSPTYAREILTPEFGYG 228 (473)
T ss_pred EEEcCCCccCCcC-CH---HHHHHcC---CChH-HcCchhhhcCCc-hHHHHHHHHhCCcCeecCHhHHHHhcCCcCCcc
Confidence 9999964311000 00 0000000 0000 000000000000 1234556789999999999999888642 11
Q ss_pred -------CCCceEEecCCCCCCCCCCCCC----------------------------CCCCCCCEEEEEecCCCccChHH
Q 016925 242 -------IPDRIKRVYPPCDTSGLQVLPL----------------------------ERSTEYPAIISVAQFRPEKAHPL 286 (380)
Q Consensus 242 -------~~~k~~vi~~gvd~~~~~~~~~----------------------------~~~~~~~~il~VGRl~p~K~~d~ 286 (380)
.+.++.+|+||+|.+.|.+... ...++.+.|+++||++++||++.
T Consensus 229 l~~~l~~~~~ki~~I~NGid~~~~~p~~~~~~~~~~~~~~~~~k~~~k~~l~~~~gl~~~~~~~~i~~vGrl~~~Kg~~~ 308 (473)
T TIGR02095 229 LDGVLKARSGKLRGILNGIDTEVWNPATDPYLKANYSADDLAGKAENKEALQEELGLPVDDDVPLFGVISRLTQQKGVDL 308 (473)
T ss_pred chhHHHhcCCCeEEEeCCCCccccCCCCCcccccCcCccchhhhhhhHHHHHHHcCCCccCCCCEEEEEecCccccChHH
Confidence 1358999999999887764210 00124689999999999999999
Q ss_pred HHHHHHHHHHHccCCCCCCeEEEEcCCCCCCCHHHHHHHHHHHHhcCCCCcEEEccCCCHHHHHHHHhhccEEEe-echh
Q 016925 287 QLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRSVLTIFMHLFVFTM-KWQL 365 (380)
Q Consensus 287 li~A~~~l~~~~~~~~~~~~LvIvG~g~~~~~~~~~~~L~~la~~lgl~~~V~f~G~v~~~el~~ly~~a~vf~~-~~~~ 365 (380)
+++|++.+.+ .+++|+|+|+|. .++.+++++++++++ ++|.|.+..+++++..+|+.||+|++ +..|
T Consensus 309 li~a~~~l~~------~~~~lvi~G~g~----~~~~~~l~~~~~~~~--~~v~~~~~~~~~~~~~~~~~aDv~l~pS~~E 376 (473)
T TIGR02095 309 LLAALPELLE------LGGQLVVLGTGD----PELEEALRELAERYP--GNVRVIIGYDEALAHLIYAGADFILMPSRFE 376 (473)
T ss_pred HHHHHHHHHH------cCcEEEEECCCC----HHHHHHHHHHHHHCC--CcEEEEEcCCHHHHHHHHHhCCEEEeCCCcC
Confidence 9999999965 369999999873 346678899988764 67999888888889999999999997 6789
Q ss_pred hHHH
Q 016925 366 VYDE 369 (380)
Q Consensus 366 ~~~~ 369 (380)
+||-
T Consensus 377 ~~gl 380 (473)
T TIGR02095 377 PCGL 380 (473)
T ss_pred CcHH
Confidence 9994
No 30
>TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family. This model describes Corynebacterium glutamicum GlgA and closely related proteins in several other species. This enzyme is required for glycogen biosynthesis and appears to replace the distantly related TIGR02095 family of ADP-glucose type glycogen synthase in Corynebacterium glutamicum, Mycobacterium tuberculosis, Bifidobacterium longum, and Streptomyces coelicolor.
Probab=99.87 E-value=6.5e-20 Score=179.61 Aligned_cols=283 Identities=13% Similarity=0.127 Sum_probs=178.3
Q ss_pred cEEEEECCCCCC--CCChhHHHHHHHHHHHHhCCCceEEEEcCCCCCChhhHHHHHHhhcCccccCCCeEEEeccccccc
Q 016925 35 TSVAFFHPNTND--GGGGERVLWCAVKAIQEESPDLDCIVYTGDHDAFPDSLLARAVDRFGVELLHPPKVVHLYRRKWIE 112 (380)
Q Consensus 35 ~~I~~~~p~~~~--~GG~ervl~~la~~L~~~g~~~~v~v~t~~~~~~~~~~~~~~~~~~g~~l~~~v~~v~l~~~~~~~ 112 (380)
|||+++++.+.. .||+++++.+++.+|+++ ++++|.+++... . . .+++++..++.
T Consensus 1 mkI~~i~~~~~p~~~GG~~~~v~~l~~~l~~~-~~v~v~~~~~~~---~-----~---------~~~~~~~~~~~----- 57 (388)
T TIGR02149 1 MKVTVLTREYPPNVYGGAGVHVEELTRELARL-MDVDVRCFGDQR---F-----D---------SEGLTVKGYRP----- 57 (388)
T ss_pred CeeEEEecccCccccccHhHHHHHHHHHHHHh-cCeeEEcCCCch---h-----c---------CCCeEEEEecC-----
Confidence 789999876643 499999999999999886 456654432211 0 0 01122332211
Q ss_pred cCCCCccceehhhHhHHHHHHHH-HHhcCCcEEEeCCCchhhHH-H-HhHhCCcEEEEEeCCcchhhHHHhhhccccccC
Q 016925 113 ESTYPRFTMIGQSFGSVYLSWEA-LCKFTPLYYFDTSGYAFTYP-L-ARIFGCRVICYTHYPTISLDMISRVREGSSMYN 189 (380)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~-l~~~~pDi~~~~~~~~~~~~-l-~~~~~~p~v~~~H~p~~~~~~~~~~~~~~~~~~ 189 (380)
+.........+..+...+.. ....++|+++.+...+...+ + ++..++|.+.+.|...... .+.
T Consensus 58 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~divh~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~-----------~~~ 123 (388)
T TIGR02149 58 ---WSELKEANKALGTFSVDLAMANDPVDADVVHSHTWYTFLAGHLAKKLYDKPLVVTAHSLEPLR-----------PWK 123 (388)
T ss_pred ---hhhccchhhhhhhhhHHHHHhhCCCCCCeEeecchhhhhHHHHHHHhcCCCEEEEeecccccc-----------ccc
Confidence 00000011111111111111 22346898775543332222 2 2346899999999532100 000
Q ss_pred CCccccccchhhhhHHHHHHHHHHHHHHHhcCCCEEEEcCHHHHHHHHHHh-CC-CCceEEecCCCCCCCCCCCCCC---
Q 016925 190 NNASIAQSNWLSQCKIVYYTFFSWMYGLVGSCADLAMVNSSWTQSHIEKLW-GI-PDRIKRVYPPCDTSGLQVLPLE--- 264 (380)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ad~ii~~S~~~~~~i~~~~-~~-~~k~~vi~~gvd~~~~~~~~~~--- 264 (380)
.. .. ... +.++.++++...+.+|.++++|+.+++.+.+.+ +. ..++.+++||+|.+.+.+....
T Consensus 124 ~~-~~-----~~~-----~~~~~~~~~~~~~~ad~vi~~S~~~~~~~~~~~~~~~~~~i~vi~ng~~~~~~~~~~~~~~~ 192 (388)
T TIGR02149 124 EE-QL-----GGG-----YKLSSWAEKTAIEAADRVIAVSGGMREDILKYYPDLDPEKVHVIYNGIDTKEYKPDDGNVVL 192 (388)
T ss_pred cc-cc-----ccc-----hhHHHHHHHHHHhhCCEEEEccHHHHHHHHHHcCCCCcceEEEecCCCChhhcCCCchHHHH
Confidence 00 00 000 113345567778899999999999999998877 33 4678899999998766542110
Q ss_pred ----CCCCCCEEEEEecCCCccChHHHHHHHHHHHHHccCCCCCCeEEEEcCCCCCCCHHHHHHHHHHHHhcCCC-CcEE
Q 016925 265 ----RSTEYPAIISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVD-GNVE 339 (380)
Q Consensus 265 ----~~~~~~~il~VGRl~p~K~~d~li~A~~~l~~~~~~~~~~~~LvIvG~g~~~~~~~~~~~L~~la~~lgl~-~~V~ 339 (380)
...++++++++||++++||++.+++|++.+. ++++|+++|++.. ..++.+++++++++++.. ++|.
T Consensus 193 ~~~~~~~~~~~i~~~Grl~~~Kg~~~li~a~~~l~-------~~~~l~i~g~g~~--~~~~~~~~~~~~~~~~~~~~~v~ 263 (388)
T TIGR02149 193 DRYGIDRSRPYILFVGRITRQKGVPHLLDAVHYIP-------KDVQVVLCAGAPD--TPEVAEEVRQAVALLDRNRTGII 263 (388)
T ss_pred HHhCCCCCceEEEEEcccccccCHHHHHHHHHHHh-------hcCcEEEEeCCCC--cHHHHHHHHHHHHHhccccCceE
Confidence 1134579999999999999999999999873 5788999987643 345667889998888773 4577
Q ss_pred E-ccCCCHHHHHHHHhhccEEEe-echhhHHHHHHHH
Q 016925 340 F-YKNLLYRSVLTIFMHLFVFTM-KWQLVYDEFLKLY 374 (380)
Q Consensus 340 f-~G~v~~~el~~ly~~a~vf~~-~~~~~~~~~~~~~ 374 (380)
| .|.++++++.++|+.||+|++ +..|.||--+-.+
T Consensus 264 ~~~~~~~~~~~~~~~~~aDv~v~ps~~e~~g~~~lEA 300 (388)
T TIGR02149 264 WINKMLPKEELVELLSNAEVFVCPSIYEPLGIVNLEA 300 (388)
T ss_pred EecCCCCHHHHHHHHHhCCEEEeCCccCCCChHHHHH
Confidence 6 467999999999999999997 5679888654333
No 31
>TIGR02470 sucr_synth sucrose synthase. This model represents sucrose synthase, an enzyme that, despite its name, generally uses rather produces sucrose. Sucrose plus UDP (or ADP) becomes D-fructose plus UDP-glucose (or ADP-glucose), which is then available for cell wall (or starch) biosynthesis. The enzyme is homologous to sucrose phosphate synthase, which catalyzes the penultimate step in sucrose synthesis. Sucrose synthase is found, so far, exclusively in plants and cyanobacteria.
Probab=99.87 E-value=2e-20 Score=194.14 Aligned_cols=315 Identities=13% Similarity=0.080 Sum_probs=184.3
Q ss_pred cCCCCcEEEEECCCC----------CCCCChhHHHHHHHHHH--------HHhCCCc--eEEEEcCCCC-CChhhHHHHH
Q 016925 30 RRNRTTSVAFFHPNT----------NDGGGGERVLWCAVKAI--------QEESPDL--DCIVYTGDHD-AFPDSLLARA 88 (380)
Q Consensus 30 ~~~~~~~I~~~~p~~----------~~~GG~ervl~~la~~L--------~~~g~~~--~v~v~t~~~~-~~~~~~~~~~ 88 (380)
|---.|+|+++.++. ...||...++.+++++| +++|+++ +|+|+|..-+ ..+..+.+..
T Consensus 251 ~~p~~~rIa~lS~Hg~~~~~~~lG~~DtGGq~vYV~elaraL~~~~~~~La~~G~~v~~~V~I~TR~~~~~~~~~~~~~~ 330 (784)
T TIGR02470 251 RIPMVFNVVILSPHGYFGQENVLGLPDTGGQVVYILDQVRALENEMLQRIKLQGLEITPKILIVTRLIPDAEGTTCNQRL 330 (784)
T ss_pred hCCccceEEEEecccccCCccccCCCCCCCceeHHHHHHHHHHHHHHHHHHhcCCCccceEEEEecCCCCcccccccccc
Confidence 445568999886555 12589999999999985 5777432 6889996432 1111111111
Q ss_pred HhhcCccccCCCeEEEecccccc---ccCCCCccceehhhHhHHHHH-HHHHH---hcCCcEEEeCCCchhhHH--HHhH
Q 016925 89 VDRFGVELLHPPKVVHLYRRKWI---EESTYPRFTMIGQSFGSVYLS-WEALC---KFTPLYYFDTSGYAFTYP--LARI 159 (380)
Q Consensus 89 ~~~~g~~l~~~v~~v~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~-~~~l~---~~~pDi~~~~~~~~~~~~--l~~~ 159 (380)
+ .++..+++++++++.+..- -+...+++.+ +..+..+... .+.+. ..+||++|.+.+-++... +++.
T Consensus 331 e---~~~~~~~~~I~rvp~g~~~~~~~~~~i~k~~l-~p~l~~f~~~~~~~~~~~~~~~pDlIHahy~d~glva~lla~~ 406 (784)
T TIGR02470 331 E---KVYGTEHAWILRVPFRTENGIILRNWISRFEI-WPYLETFAEDAEKEILAELQGKPDLIIGNYSDGNLVASLLARK 406 (784)
T ss_pred c---cccCCCceEEEEecCCCCcccccccccCHHHH-HHHHHHHHHHHHHHHHHhcCCCCCEEEECCCchHHHHHHHHHh
Confidence 1 1112245677776543210 0111222222 1111111111 11121 346998886655443222 3456
Q ss_pred hCCcEEEEEeCCcchhhHHHhhhccccccCCCccccccchhhhhHHHHHH--HHHHHHHHHhcCCCEEEEcCHHHHH---
Q 016925 160 FGCRVICYTHYPTISLDMISRVREGSSMYNNNASIAQSNWLSQCKIVYYT--FFSWMYGLVGSCADLAMVNSSWTQS--- 234 (380)
Q Consensus 160 ~~~p~v~~~H~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~ad~ii~~S~~~~~--- 234 (380)
.++|.+.+.|.... .+.+.. ...+ ......|.. .+ ..+..++..||.|||+|.....
T Consensus 407 lgVP~v~t~HsL~~-------~K~~~~---g~~~-------~~~e~~~~~~~r~-~ae~~~~~~AD~IItsT~qEi~~~~ 468 (784)
T TIGR02470 407 LGVTQCTIAHALEK-------TKYPDS---DIYW-------QEFEDKYHFSCQF-TADLIAMNAADFIITSTYQEIAGTK 468 (784)
T ss_pred cCCCEEEECCcchh-------hccccc---cccc-------ccchhHHHhhhhh-hHHHHHHhcCCEEEECcHHHhhhhh
Confidence 78999998896432 111110 0000 000001110 01 1134677899999999964422
Q ss_pred -HHHH-----------HhC----C---CCceEEecCCCCCCCCCCCCCC----------------------------CCC
Q 016925 235 -HIEK-----------LWG----I---PDRIKRVYPPCDTSGLQVLPLE----------------------------RST 267 (380)
Q Consensus 235 -~i~~-----------~~~----~---~~k~~vi~~gvd~~~~~~~~~~----------------------------~~~ 267 (380)
.+.+ +++ . ..|+.||+||+|+..|.+.+.. ...
T Consensus 469 ~~v~qY~s~~~ft~p~Ly~vvnGid~~~~Ki~VVpPGVD~~iF~P~~~~~~r~~~~~~~ie~ll~~~~~~~~~~G~l~d~ 548 (784)
T TIGR02470 469 DSVGQYESHQAFTMPGLYRVVHGIDVFDPKFNIVSPGADESIYFPYSDKEKRLTNLHPEIEELLFSLEDNDEHYGYLKDP 548 (784)
T ss_pred hhhhhhhhcccccccceeeeecCccCCcCCeEEECCCcChhhcCCCCchhhhhhhhhcchhhhccchhhHHHHhCCCCCC
Confidence 2221 111 1 2588999999998877653210 023
Q ss_pred CCCEEEEEecCCCccChHHHHHHHHHHHHHccCCCCCCeEEEEcCCCCC------CCHHHHHHHHHHHHhcCCCCcEEEc
Q 016925 268 EYPAIISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNK------SDEERLQSLKDKSIELKVDGNVEFY 341 (380)
Q Consensus 268 ~~~~il~VGRl~p~K~~d~li~A~~~l~~~~~~~~~~~~LvIvG~g~~~------~~~~~~~~L~~la~~lgl~~~V~f~ 341 (380)
+++.|++|||++++||++.+|+|++.+.+. .++++|+|+|++... +..++.++|+++++++|+.++|.|+
T Consensus 549 ~kpiIl~VGRL~~~KGid~LIeA~~~l~~l----~~~~~LVIVGGg~~~~~s~d~ee~~~i~~L~~la~~~gL~g~V~fl 624 (784)
T TIGR02470 549 NKPIIFSMARLDRVKNLTGLVECYGRSPKL----RELVNLVVVAGKLDAKESKDREEQAEIEKMHNLIDQYQLHGQIRWI 624 (784)
T ss_pred CCcEEEEEeCCCccCCHHHHHHHHHHhHhh----CCCeEEEEEeCCcccccccchhHHHHHHHHHHHHHHhCCCCeEEEc
Confidence 568999999999999999999999987543 267999999986421 1223567899999999999999999
Q ss_pred cCC-CHHHHHHHHh----hccEEEe-echhhHHHH
Q 016925 342 KNL-LYRSVLTIFM----HLFVFTM-KWQLVYDEF 370 (380)
Q Consensus 342 G~v-~~~el~~ly~----~a~vf~~-~~~~~~~~~ 370 (380)
|.+ +..++.++|. .+|+|++ ++.|+||-=
T Consensus 625 G~~~~~~~~~elyr~iAd~adVfV~PS~~EpFGLv 659 (784)
T TIGR02470 625 GAQLNRVRNGELYRYIADTKGIFVQPALYEAFGLT 659 (784)
T ss_pred cCcCCcccHHHHHHHhhccCcEEEECCcccCCCHH
Confidence 975 5567777775 3468886 799999953
No 32
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=99.87 E-value=4.6e-20 Score=177.02 Aligned_cols=288 Identities=17% Similarity=0.110 Sum_probs=179.6
Q ss_pred EEEEECCCCC-CCCChhHHHHHHHHHHHHhCCCceEEEEcCCCCCChhhHHHHHHhhcCccccCCCeEEEeccccccccC
Q 016925 36 SVAFFHPNTN-DGGGGERVLWCAVKAIQEESPDLDCIVYTGDHDAFPDSLLARAVDRFGVELLHPPKVVHLYRRKWIEES 114 (380)
Q Consensus 36 ~I~~~~p~~~-~~GG~ervl~~la~~L~~~g~~~~v~v~t~~~~~~~~~~~~~~~~~~g~~l~~~v~~v~l~~~~~~~~~ 114 (380)
||+++.+.+. ..||+++++.+++++|++.| |+|++++......... .. . ... ..............
T Consensus 1 kIl~i~~~~~~~~gG~~~~~~~l~~~L~~~g--~~v~v~~~~~~~~~~~--~~-~--~~~------~~~~~~~~~~~~~~ 67 (375)
T cd03821 1 KILHVIPSFDPKYGGPVRVVLNLSKALAKLG--HEVTVATTDAGGDPLL--VA-L--NGV------PVKLFSINVAYGLN 67 (375)
T ss_pred CeEEEcCCCCcccCCeehHHHHHHHHHHhcC--CcEEEEecCCCCccch--hh-c--cCc------eeeecccchhhhhh
Confidence 5888888874 56899999999999999988 6677777543211110 00 0 000 00000000000000
Q ss_pred CCCccceehhhHhHHHHHHHHHHhcCCcEEEeCCC-chhhHHH---HhHhCCcEEEEEeCCcchhhHHHhhhccccccCC
Q 016925 115 TYPRFTMIGQSFGSVYLSWEALCKFTPLYYFDTSG-YAFTYPL---ARIFGCRVICYTHYPTISLDMISRVREGSSMYNN 190 (380)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~l~~~~pDi~~~~~~-~~~~~~l---~~~~~~p~v~~~H~p~~~~~~~~~~~~~~~~~~~ 190 (380)
... ...... ...+......++|+++.+.. .....+. ++..++|++++.|.......
T Consensus 68 ~~~--~~~~~~----~~~~~~~~~~~~dii~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-------------- 127 (375)
T cd03821 68 LAR--YLFPPS----LLAWLRLNIREADIVHVHGLWSYPSLAAARAARKYGIPYVVSPHGMLDPWA-------------- 127 (375)
T ss_pred hhh--hccChh----HHHHHHHhCCCCCEEEEecccchHHHHHHHHHHHhCCCEEEEccccccccc--------------
Confidence 000 000000 11122234567997654331 1112222 23457899998885431100
Q ss_pred CccccccchhhhhHHHHHHHHHHHHHHHhcCCCEEEEcCHHHHHHHHHHhCCCCceEEecCCCCCCCCCCCCC-------
Q 016925 191 NASIAQSNWLSQCKIVYYTFFSWMYGLVGSCADLAMVNSSWTQSHIEKLWGIPDRIKRVYPPCDTSGLQVLPL------- 263 (380)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ad~ii~~S~~~~~~i~~~~~~~~k~~vi~~gvd~~~~~~~~~------- 263 (380)
... ....+.+++. ..++...+.+|.++++|+........... ..++.+++||+|.+.+...+.
T Consensus 128 ---~~~---~~~~~~~~~~---~~~~~~~~~~~~i~~~s~~~~~~~~~~~~-~~~~~vi~~~~~~~~~~~~~~~~~~~~~ 197 (375)
T cd03821 128 ---LPH---KALKKRLAWF---LFERRLLQAAAAVHATSEQEAAEIRRLGL-KAPIAVIPNGVDIPPFAALPSRGRRRKF 197 (375)
T ss_pred ---ccc---chhhhHHHHH---HHHHHHHhcCCEEEECCHHHHHHHHhhCC-cccEEEcCCCcChhccCcchhhhhhhhc
Confidence 000 0111111111 23455667899999999887777665433 468899999999876654321
Q ss_pred CCCCCCCEEEEEecCCCccChHHHHHHHHHHHHHccCCCCCCeEEEEcCCCCCCCHHHHHHHHHHHHhcCCCCcEEEccC
Q 016925 264 ERSTEYPAIISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKN 343 (380)
Q Consensus 264 ~~~~~~~~il~VGRl~p~K~~d~li~A~~~l~~~~~~~~~~~~LvIvG~g~~~~~~~~~~~L~~la~~lgl~~~V~f~G~ 343 (380)
....+++.++++||+.++||++.+++|+..+.++. ++++|+++|.+.. .+.+.++.+++++++.++|.|+|.
T Consensus 198 ~~~~~~~~i~~~G~~~~~K~~~~li~a~~~l~~~~----~~~~l~i~G~~~~----~~~~~~~~~~~~~~~~~~v~~~g~ 269 (375)
T cd03821 198 PILPDKRIILFLGRLHPKKGLDLLIEAFAKLAERF----PDWHLVIAGPDEG----GYRAELKQIAAALGLEDRVTFTGM 269 (375)
T ss_pred cCCCCCcEEEEEeCcchhcCHHHHHHHHHHhhhhc----CCeEEEEECCCCc----chHHHHHHHHHhcCccceEEEcCC
Confidence 11235689999999999999999999999998764 8999999998642 344667777899999999999999
Q ss_pred CCHHHHHHHHhhccEEEeech-hhHHHHHHHH
Q 016925 344 LLYRSVLTIFMHLFVFTMKWQ-LVYDEFLKLY 374 (380)
Q Consensus 344 v~~~el~~ly~~a~vf~~~~~-~~~~~~~~~~ 374 (380)
++++++..+|+.||+++++.. |.||--+--+
T Consensus 270 ~~~~~~~~~~~~adv~v~ps~~e~~~~~~~Ea 301 (375)
T cd03821 270 LYGEDKAAALADADLFVLPSHSENFGIVVAEA 301 (375)
T ss_pred CChHHHHHHHhhCCEEEeccccCCCCcHHHHH
Confidence 999999999999999987544 8888644333
No 33
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.87 E-value=6.9e-20 Score=182.69 Aligned_cols=198 Identities=17% Similarity=0.097 Sum_probs=141.2
Q ss_pred HHHHhcCCcEEEeCCCchhhHH--HHhHhCCcEEEE-EeCCcchhhHHHhhhccccccCCCccccccchhhhhHHHHHHH
Q 016925 134 EALCKFTPLYYFDTSGYAFTYP--LARIFGCRVICY-THYPTISLDMISRVREGSSMYNNNASIAQSNWLSQCKIVYYTF 210 (380)
Q Consensus 134 ~~l~~~~pDi~~~~~~~~~~~~--l~~~~~~p~v~~-~H~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (380)
..+++.+||+++.+...+..+. .+++.++|++++ .|. . . +. .. ...... -
T Consensus 274 ~~ir~~rpDIVHt~~~~a~l~g~laA~lagvpviv~~~h~-~-~-~~-----------------~~---~r~~~~----e 326 (578)
T PRK15490 274 PHLCERKLDYLSVWQDGACLMIALAALIAGVPRIQLGLRG-L-P-PV-----------------VR---KRLFKP----E 326 (578)
T ss_pred HHHHHcCCCEEEEcCcccHHHHHHHHHhcCCCEEEEeecc-c-C-Cc-----------------ch---hhHHHH----H
Confidence 4578999998886655443232 345678898654 452 1 0 00 00 000000 0
Q ss_pred HHHHHH--HHhcCCCEEEEcCHHHHHHHHHHhCC-CCceEEecCCCCCCCCCCCCC-----------CCCCCCCEEEEEe
Q 016925 211 FSWMYG--LVGSCADLAMVNSSWTQSHIEKLWGI-PDRIKRVYPPCDTSGLQVLPL-----------ERSTEYPAIISVA 276 (380)
Q Consensus 211 ~~~l~~--~~~~~ad~ii~~S~~~~~~i~~~~~~-~~k~~vi~~gvd~~~~~~~~~-----------~~~~~~~~il~VG 276 (380)
+..+++ ...+.+| ++++|..+++.+.+.++. ++++.|||||+|+..|.+... ...++.+.+++||
T Consensus 327 ~~~~~~a~~i~~~sd-~v~~s~~v~~~l~~~lgip~~KI~VIyNGVD~~rf~p~~~~~~~~r~~~~~~l~~~~~vIg~Vg 405 (578)
T PRK15490 327 YEPLYQALAVVPGVD-FMSNNHCVTRHYADWLKLEAKHFQVVYNGVLPPSTEPSSEVPHKIWQQFTQKTQDADTTIGGVF 405 (578)
T ss_pred HHHhhhhceeEecch-hhhccHHHHHHHHHHhCCCHHHEEEEeCCcchhhcCccchhhHHHHHHhhhccCCCCcEEEEEE
Confidence 001111 1234556 788999999999888776 478999999999876665211 0012346899999
Q ss_pred cCCCccChHHHHHHHHHHHHHccCCCCCCeEEEEcCCCCCCCHHHHHHHHHHHHhcCCCCcEEEccCCCHHHHHHHHhhc
Q 016925 277 QFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRSVLTIFMHL 356 (380)
Q Consensus 277 Rl~p~K~~d~li~A~~~l~~~~~~~~~~~~LvIvG~g~~~~~~~~~~~L~~la~~lgl~~~V~f~G~v~~~el~~ly~~a 356 (380)
|+.++||++.+|+|++.+.++. |+++|+|+|+|+ +.++++++++++|+.++|+|+|+. +++.++|+.|
T Consensus 406 Rl~~~Kg~~~LI~A~a~llk~~----pdirLvIVGdG~------~~eeLk~la~elgL~d~V~FlG~~--~Dv~~~LaaA 473 (578)
T PRK15490 406 RFVGDKNPFAWIDFAARYLQHH----PATRFVLVGDGD------LRAEAQKRAEQLGILERILFVGAS--RDVGYWLQKM 473 (578)
T ss_pred EEehhcCHHHHHHHHHHHHhHC----CCeEEEEEeCch------hHHHHHHHHHHcCCCCcEEECCCh--hhHHHHHHhC
Confidence 9999999999999999887765 899999999873 357899999999999999999984 5899999999
Q ss_pred cEEEe-echhhHHHHH
Q 016925 357 FVFTM-KWQLVYDEFL 371 (380)
Q Consensus 357 ~vf~~-~~~~~~~~~~ 371 (380)
|+|++ +..|.||-=+
T Consensus 474 DVfVlPS~~EGfp~vl 489 (578)
T PRK15490 474 NVFILFSRYEGLPNVL 489 (578)
T ss_pred CEEEEcccccCccHHH
Confidence 99987 5789988533
No 34
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=99.87 E-value=1.1e-19 Score=174.78 Aligned_cols=271 Identities=15% Similarity=0.080 Sum_probs=180.6
Q ss_pred EEEEECCCCCCCCChhHHHHHHHHHHHHhCCCceEEEEcCCCCCChhhHHHHHHhhcCccccCCCeEEEeccccccccCC
Q 016925 36 SVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYTGDHDAFPDSLLARAVDRFGVELLHPPKVVHLYRRKWIEEST 115 (380)
Q Consensus 36 ~I~~~~p~~~~~GG~ervl~~la~~L~~~g~~~~v~v~t~~~~~~~~~~~~~~~~~~g~~l~~~v~~v~l~~~~~~~~~~ 115 (380)
||+++.+.+ ++|+|+++++++++|.+.| |+|.+++......+.. .... ..... ...+.
T Consensus 1 ki~~~~~~~--~~~~~~~~~~~~~~L~~~g--~~v~v~~~~~~~~~~~-~~~~-----~~~~~--~~~~~---------- 58 (355)
T cd03799 1 KIAYLVKEF--PRLSETFILREILALEAAG--HEVEIFSLRPPEDTLV-HPED-----RAELA--RTRYL---------- 58 (355)
T ss_pred CEEEECCCC--CCcchHHHHHHHHHHHhCC--CeEEEEEecCcccccc-cccc-----ccccc--chHHH----------
Confidence 599999988 4569999999999999998 7777777543211100 0000 00000 00000
Q ss_pred CCccceehhhHhHHHHHHHHHHhcCCcEEEeCCCchhhH-H-H-HhHhCCcEEEEEeCCcchhhHHHhhhccccccCCCc
Q 016925 116 YPRFTMIGQSFGSVYLSWEALCKFTPLYYFDTSGYAFTY-P-L-ARIFGCRVICYTHYPTISLDMISRVREGSSMYNNNA 192 (380)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~l~~~~pDi~~~~~~~~~~~-~-l-~~~~~~p~v~~~H~p~~~~~~~~~~~~~~~~~~~~~ 192 (380)
... ...+.........+++.+||+++++....... . + .+..++|.+.++|......
T Consensus 59 ---~~~-~~~~~~~~~~~~~~~~~~~Dii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------- 117 (355)
T cd03799 59 ---ARS-LALLAQALVLARELRRLGIDHIHAHFGTTPATVAMLASRLGGIPYSFTAHGKDIFR----------------- 117 (355)
T ss_pred ---HHH-HHHHHHHHHHHHHHHhcCCCEEEECCCCchHHHHHHHHHhcCCCEEEEEecccccc-----------------
Confidence 000 00011111222345678899876544322111 1 2 2234688888888544210
Q ss_pred cccccchhhhhHHHHHHHHHHHHHHHhcCCCEEEEcCHHHHHHHHHHhCC-CCceEEecCCCCCCCCCCCCCCCCCCCCE
Q 016925 193 SIAQSNWLSQCKIVYYTFFSWMYGLVGSCADLAMVNSSWTQSHIEKLWGI-PDRIKRVYPPCDTSGLQVLPLERSTEYPA 271 (380)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ad~ii~~S~~~~~~i~~~~~~-~~k~~vi~~gvd~~~~~~~~~~~~~~~~~ 271 (380)
... . ..++...+.+|.++++|+..++.+.+.++. ..++.+++||+|.+.+.+.......++..
T Consensus 118 ---~~~-~------------~~~~~~~~~~~~vi~~s~~~~~~l~~~~~~~~~~~~vi~~~~d~~~~~~~~~~~~~~~~~ 181 (355)
T cd03799 118 ---SPD-A------------IDLDEKLARADFVVAISEYNRQQLIRLLGCDPDKIHVVHCGVDLERFPPRPPPPPGEPLR 181 (355)
T ss_pred ---cCc-h------------HHHHHHHhhCCEEEECCHHHHHHHHHhcCCCcccEEEEeCCcCHHHcCCccccccCCCeE
Confidence 000 0 123455678999999999999999987544 46899999999977665432111234578
Q ss_pred EEEEecCCCccChHHHHHHHHHHHHHccCCCCCCeEEEEcCCCCCCCHHHHHHHHHHHHhcCCCCcEEEccCCCHHHHHH
Q 016925 272 IISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRSVLT 351 (380)
Q Consensus 272 il~VGRl~p~K~~d~li~A~~~l~~~~~~~~~~~~LvIvG~g~~~~~~~~~~~L~~la~~lgl~~~V~f~G~v~~~el~~ 351 (380)
++++||+.+.||++.+++|+..+.+.. ++++|+++|.+.. .+++++.++++++.++|.|.|.++++|+..
T Consensus 182 i~~~g~~~~~k~~~~l~~~~~~l~~~~----~~~~l~i~G~~~~------~~~~~~~~~~~~~~~~v~~~g~~~~~~l~~ 251 (355)
T cd03799 182 ILSVGRLVEKKGLDYLLEALALLKDRG----IDFRLDIVGDGPL------RDELEALIAELGLEDRVTLLGAKSQEEVRE 251 (355)
T ss_pred EEEEeeeccccCHHHHHHHHHHHhhcC----CCeEEEEEECCcc------HHHHHHHHHHcCCCCeEEECCcCChHHHHH
Confidence 999999999999999999999987653 7999999998642 367889999999999999999999999999
Q ss_pred HHhhccEEEeech-------hhHHHHHHHHH
Q 016925 352 IFMHLFVFTMKWQ-------LVYDEFLKLYL 375 (380)
Q Consensus 352 ly~~a~vf~~~~~-------~~~~~~~~~~~ 375 (380)
+|++||+++++.. |.||-=+-.++
T Consensus 252 ~~~~adi~l~~s~~~~~~~~e~~~~~~~Ea~ 282 (355)
T cd03799 252 LLRAADLFVLPSVTAADGDREGLPVVLMEAM 282 (355)
T ss_pred HHHhCCEEEecceecCCCCccCccHHHHHHH
Confidence 9999999887543 88875444443
No 35
>KOG1111 consensus N-acetylglucosaminyltransferase complex, subunit PIG-A/SPT14, required for phosphatidylinositol biosynthesis/Sulfolipid synthase [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Lipid transport and metabolism]
Probab=99.86 E-value=3e-21 Score=178.67 Aligned_cols=274 Identities=16% Similarity=0.136 Sum_probs=190.0
Q ss_pred cEEEEECCCCCCCCChhHHHHHHHHHHHHhCCCceEEEEcCCCCCChhhHHHHHHhhcCcc-ccCCCeEEEecccccccc
Q 016925 35 TSVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYTGDHDAFPDSLLARAVDRFGVE-LLHPPKVVHLYRRKWIEE 113 (380)
Q Consensus 35 ~~I~~~~p~~~~~GG~ervl~~la~~L~~~g~~~~v~v~t~~~~~~~~~~~~~~~~~~g~~-l~~~v~~v~l~~~~~~~~ 113 (380)
|.-.||.|.. ||.|..++.++..|-+.| |.|++.|..++.+ -|+. +....++++++.......
T Consensus 5 mVsdff~P~~---ggveshiy~lSq~li~lg--hkVvvithayg~r-----------~girylt~glkVyylp~~v~~n~ 68 (426)
T KOG1111|consen 5 MVSDFFYPST---GGVESHIYALSQCLIRLG--HKVVVITHAYGNR-----------VGIRYLTNGLKVYYLPAVVGYNQ 68 (426)
T ss_pred eeCcccccCC---CChhhhHHHhhcchhhcC--CeEEEEeccccCc-----------cceeeecCCceEEEEeeeeeecc
Confidence 4455777755 899999999999999998 8999998654311 1333 333457777655333222
Q ss_pred CCCCccceehhhHhHHHHHHHHHHhcCCcEEEeCCCchhhHH--H--HhHhCCcEEEEEeCCcchhhHHHhhhccccccC
Q 016925 114 STYPRFTMIGQSFGSVYLSWEALCKFTPLYYFDTSGYAFTYP--L--ARIFGCRVICYTHYPTISLDMISRVREGSSMYN 189 (380)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~l~~~~pDi~~~~~~~~~~~~--l--~~~~~~p~v~~~H~p~~~~~~~~~~~~~~~~~~ 189 (380)
.++|.+.- .+......+.+.+..+++.++.+++..- + ++..|.+.|++.|...-..|.
T Consensus 69 tT~ptv~~------~~Pllr~i~lrE~I~ivhghs~fS~lahe~l~hartMGlktVfTdHSlfGfad~------------ 130 (426)
T KOG1111|consen 69 TTFPTVFS------DFPLLRPILLRERIEIVHGHSPFSYLAHEALMHARTMGLKTVFTDHSLFGFADI------------ 130 (426)
T ss_pred cchhhhhc------cCcccchhhhhhceEEEecCChHHHHHHHHHHHHHhcCceEEEeccccccccch------------
Confidence 33332111 1111112234456777775544331110 1 334578999999953321111
Q ss_pred CCccccccchhhhhHHHHHHHHHHHHHHHhcCCCEEEEcCHHHHHHHHHHhCC-CCceEEecCCCCCCCCCCCCCCCCCC
Q 016925 190 NNASIAQSNWLSQCKIVYYTFFSWMYGLVGSCADLAMVNSSWTQSHIEKLWGI-PDRIKRVYPPCDTSGLQVLPLERSTE 268 (380)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ad~ii~~S~~~~~~i~~~~~~-~~k~~vi~~gvd~~~~~~~~~~~~~~ 268 (380)
-..++..+.++++...|.+||+|...++-..-.... +.++.+|+|.++...|.|.+......
T Consensus 131 -----------------~si~~n~ll~~sL~~id~~IcVshtskentvlr~~L~p~kvsvIPnAv~~~~f~P~~~~~~S~ 193 (426)
T KOG1111|consen 131 -----------------GSILTNKLLPLSLANIDRIICVSHTSKENTVLRGALAPAKVSVIPNAVVTHTFTPDAADKPSA 193 (426)
T ss_pred -----------------hhhhhcceeeeeecCCCcEEEEeecCCCceEEEeccCHhHeeeccceeeccccccCccccCCC
Confidence 011334455677889999999998887643211112 57899999999999998843332222
Q ss_pred -CCEEEEEecCCCccChHHHHHHHHHHHHHccCCCCCCeEEEEcCCCCCCCHHHHHHHHHHHHhcCCCCcEEEccCCCHH
Q 016925 269 -YPAIISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYR 347 (380)
Q Consensus 269 -~~~il~VGRl~p~K~~d~li~A~~~l~~~~~~~~~~~~LvIvG~g~~~~~~~~~~~L~~la~~lgl~~~V~f~G~v~~~ 347 (380)
...++.+||+-++||+|.+++++..+.+++ |+++++|+|+|+. +..+++..+++.+.++|.|+|.++++
T Consensus 194 ~i~~ivv~sRLvyrKGiDll~~iIp~vc~~~----p~vrfii~GDGPk------~i~lee~lEk~~l~~rV~~lG~v~h~ 263 (426)
T KOG1111|consen 194 DIITIVVASRLVYRKGIDLLLEIIPSVCDKH----PEVRFIIIGDGPK------RIDLEEMLEKLFLQDRVVMLGTVPHD 263 (426)
T ss_pred CeeEEEEEeeeeeccchHHHHHHHHHHHhcC----CCeeEEEecCCcc------cchHHHHHHHhhccCceEEecccchH
Confidence 268999999999999999999999999876 9999999999974 46788999999999999999999999
Q ss_pred HHHHHHhhccEEEe-echhhHHH
Q 016925 348 SVLTIFMHLFVFTM-KWQLVYDE 369 (380)
Q Consensus 348 el~~ly~~a~vf~~-~~~~~~~~ 369 (380)
++.+.|.+.|+|++ +-.|-||-
T Consensus 264 ~Vr~vl~~G~IFlntSlTEafc~ 286 (426)
T KOG1111|consen 264 RVRDVLVRGDIFLNTSLTEAFCM 286 (426)
T ss_pred HHHHHHhcCcEEeccHHHHHHHH
Confidence 99999999999997 56777764
No 36
>PLN02939 transferase, transferring glycosyl groups
Probab=99.86 E-value=1.5e-19 Score=188.66 Aligned_cols=319 Identities=11% Similarity=0.045 Sum_probs=189.9
Q ss_pred hhhcCCCCcEEEEEC----CCCCCCCChhHHHHHHHHHHHHhCCCceEEEEcCCCCCCh-hhHHHHHH--h-----hcCc
Q 016925 27 HNARRNRTTSVAFFH----PNTNDGGGGERVLWCAVKAIQEESPDLDCIVYTGDHDAFP-DSLLARAV--D-----RFGV 94 (380)
Q Consensus 27 ~~~~~~~~~~I~~~~----p~~~~~GG~ervl~~la~~L~~~g~~~~v~v~t~~~~~~~-~~~~~~~~--~-----~~g~ 94 (380)
-+-.+.++|+|+|+. |+.. .||..-|+..+.++|+++| |+|.|++..++.-. ... .... + .++-
T Consensus 474 ~~~~~~~~mkILfVasE~aP~aK-tGGLaDVv~sLPkAL~~~G--hdV~VIlP~Y~~i~~~~~-~~~~~~~~~~~~~~~g 549 (977)
T PLN02939 474 TLSGTSSGLHIVHIAAEMAPVAK-VGGLADVVSGLGKALQKKG--HLVEIVLPKYDCMQYDQI-RNLKVLDVVVESYFDG 549 (977)
T ss_pred ccCCCCCCCEEEEEEcccccccc-cccHHHHHHHHHHHHHHcC--CeEEEEeCCCcccChhhh-hcccccceEEEEeecC
Confidence 344456899999996 5553 5899999999999999999 67777776553111 111 1000 0 0100
Q ss_pred c---------ccCCCeEEEecc-c--cccc-cCCCCccceehhhHhHHHH-HHHHHH--hcCCcEEEeCCCchhhH-HHH
Q 016925 95 E---------LLHPPKVVHLYR-R--KWIE-ESTYPRFTMIGQSFGSVYL-SWEALC--KFTPLYYFDTSGYAFTY-PLA 157 (380)
Q Consensus 95 ~---------l~~~v~~v~l~~-~--~~~~-~~~~~~~~~~~~~~~~~~~-~~~~l~--~~~pDi~~~~~~~~~~~-~l~ 157 (380)
. .-+++.++.+.. . .+.. +..|....... .+..|-+ ..+.+. ..+|||+|++......+ |+.
T Consensus 550 ~~~~~~v~~~~~~GV~vyfId~~~~~~fF~R~~iYg~~Dn~~-RF~~FsrAaLe~~~~~~~~PDIIH~HDW~TaLV~pll 628 (977)
T PLN02939 550 NLFKNKIWTGTVEGLPVYFIEPQHPSKFFWRAQYYGEHDDFK-RFSYFSRAALELLYQSGKKPDIIHCHDWQTAFVAPLY 628 (977)
T ss_pred ceeEEEEEEEEECCeeEEEEecCCchhccCCCCCCCCccHHH-HHHHHHHHHHHHHHhcCCCCCEEEECCccHHHHHHHH
Confidence 0 002233333321 0 0111 11121000000 0111101 122333 35899988777765544 432
Q ss_pred h-------HhCCcEEEEEeCCcchhhHHH--hhhccccccCCCccccccch--hhhhHHHHHHHHHHHHHHHhcCCCEEE
Q 016925 158 R-------IFGCRVICYTHYPTISLDMIS--RVREGSSMYNNNASIAQSNW--LSQCKIVYYTFFSWMYGLVGSCADLAM 226 (380)
Q Consensus 158 ~-------~~~~p~v~~~H~p~~~~~~~~--~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~ad~ii 226 (380)
+ ..++|+|+++|....- ...+ .+.. .+ +....+ ...+..-++..+. +.+..+..||.|+
T Consensus 629 ~~~y~~~~~~~~ktVfTIHNl~yQ-G~f~~~~l~~-----lG---L~~~~l~~~d~le~~~~~~iN-~LK~GIv~AD~Vt 698 (977)
T PLN02939 629 WDLYAPKGFNSARICFTCHNFEYQ-GTAPASDLAS-----CG---LDVHQLDRPDRMQDNAHGRIN-VVKGAIVYSNIVT 698 (977)
T ss_pred HHHHhhccCCCCcEEEEeCCCcCC-CcCCHHHHHH-----cC---CCHHHccChhhhhhccCCchH-HHHHHHHhCCeeE
Confidence 2 1357899999954310 0000 0000 00 000000 0000000000111 1223344799999
Q ss_pred EcCHHHHHHHHHHhC--------C-CCceEEecCCCCCCCCCCCCC----------------------------CCC-CC
Q 016925 227 VNSSWTQSHIEKLWG--------I-PDRIKRVYPPCDTSGLQVLPL----------------------------ERS-TE 268 (380)
Q Consensus 227 ~~S~~~~~~i~~~~~--------~-~~k~~vi~~gvd~~~~~~~~~----------------------------~~~-~~ 268 (380)
|+|...++++...++ . ..++.+|+||+|.+.|.|... ... ++
T Consensus 699 TVSptYA~EI~te~G~GL~~~L~~~~~Kl~gIlNGID~e~wnPatD~~L~~~Ys~~dl~GK~~nK~aLRkelGL~~~d~d 778 (977)
T PLN02939 699 TVSPTYAQEVRSEGGRGLQDTLKFHSKKFVGILNGIDTDTWNPSTDRFLKVQYNANDLQGKAANKAALRKQLGLSSADAS 778 (977)
T ss_pred eeeHHHHHHHHHHhccchHHHhccccCCceEEecceehhhcCCccccccccccChhhhhhhhhhhHHHHHHhCCCccccc
Confidence 999999999875322 2 468899999999887765310 000 13
Q ss_pred CCEEEEEecCCCccChHHHHHHHHHHHHHccCCCCCCeEEEEcCCCCCCCHHHHHHHHHHHHhcCCCCcEEEccCCCHHH
Q 016925 269 YPAIISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRS 348 (380)
Q Consensus 269 ~~~il~VGRl~p~K~~d~li~A~~~l~~~~~~~~~~~~LvIvG~g~~~~~~~~~~~L~~la~~lgl~~~V~f~G~v~~~e 348 (380)
.++|++|||+.++||++.+++|+..+.+ ++++|+|+|+|+. ..+.++++++++++++.++|.|+|..++..
T Consensus 779 ~pLIg~VGRL~~QKGiDlLleA~~~Ll~------~dvqLVIvGdGp~---~~~e~eL~~La~~l~l~drV~FlG~~de~l 849 (977)
T PLN02939 779 QPLVGCITRLVPQKGVHLIRHAIYKTAE------LGGQFVLLGSSPV---PHIQREFEGIADQFQSNNNIRLILKYDEAL 849 (977)
T ss_pred ceEEEEeecCCcccChHHHHHHHHHHhh------cCCEEEEEeCCCc---HHHHHHHHHHHHHcCCCCeEEEEeccCHHH
Confidence 5799999999999999999999998854 5789999998843 346688999999999999999999998877
Q ss_pred HHHHHhhccEEEe-echhhHHH
Q 016925 349 VLTIFMHLFVFTM-KWQLVYDE 369 (380)
Q Consensus 349 l~~ly~~a~vf~~-~~~~~~~~ 369 (380)
...+|+.||+|+| +..|+||-
T Consensus 850 ah~IYAaADIFLmPSr~EPfGL 871 (977)
T PLN02939 850 SHSIYAASDMFIIPSMFEPCGL 871 (977)
T ss_pred HHHHHHhCCEEEECCCccCCcH
Confidence 8899999999998 56899985
No 37
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=99.86 E-value=1.3e-19 Score=174.67 Aligned_cols=263 Identities=14% Similarity=0.117 Sum_probs=171.2
Q ss_pred EEEEECCCCCCCCChhHHHHHHHHHHHHhCCCceEEEEcCCCCCChhhHHHHHHhhcCccccCCCeEEEeccccccccCC
Q 016925 36 SVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYTGDHDAFPDSLLARAVDRFGVELLHPPKVVHLYRRKWIEEST 115 (380)
Q Consensus 36 ~I~~~~p~~~~~GG~ervl~~la~~L~~~g~~~~v~v~t~~~~~~~~~~~~~~~~~~g~~l~~~v~~v~l~~~~~~~~~~ 115 (380)
+|+++++.++ .||+|+++.+++++|.++| |+|++++...+...+ .... .. ....+... ..
T Consensus 1 ~il~~~~~~~-~gG~~~~~~~l~~~L~~~g--~~v~v~~~~~~~~~~-~~~~-----~~------~~~~~~~~-----~~ 60 (360)
T cd04951 1 KILYVITGLG-LGGAEKQVVDLADQFVAKG--HQVAIISLTGESEVK-PPID-----AT------IILNLNMS-----KN 60 (360)
T ss_pred CeEEEecCCC-CCCHHHHHHHHHHhcccCC--ceEEEEEEeCCCCcc-chhh-----cc------ceEEeccc-----cc
Confidence 4788888875 4899999999999999988 566666533211100 0000 00 01111110 00
Q ss_pred CCccceehhhHhHHHHHHHHHHhcCCcEEEeCCCchhhHH-HHh-H-hCCcEEEEEeCCcchhhHHHhhhccccccCCCc
Q 016925 116 YPRFTMIGQSFGSVYLSWEALCKFTPLYYFDTSGYAFTYP-LAR-I-FGCRVICYTHYPTISLDMISRVREGSSMYNNNA 192 (380)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~l~~~~pDi~~~~~~~~~~~~-l~~-~-~~~p~v~~~H~p~~~~~~~~~~~~~~~~~~~~~ 192 (380)
+ .. .+.......+.+++.+||+++.+...+.... +.+ . .++|.+.+.|....
T Consensus 61 -~-~~----~~~~~~~~~~~~~~~~pdiv~~~~~~~~~~~~l~~~~~~~~~~v~~~h~~~~------------------- 115 (360)
T cd04951 61 -P-LS----FLLALWKLRKILRQFKPDVVHAHMFHANIFARLLRLFLPSPPLICTAHSKNE------------------- 115 (360)
T ss_pred -c-hh----hHHHHHHHHHHHHhcCCCEEEEcccchHHHHHHHHhhCCCCcEEEEeeccCc-------------------
Confidence 0 00 1111122334577889998765433222111 222 2 35677877774221
Q ss_pred cccccchhhhhHHHHHHHHHHHHHHHhcCCCEEEEcCHHHHHHHHHHhCC-CCceEEecCCCCCCCCCCCCC--------
Q 016925 193 SIAQSNWLSQCKIVYYTFFSWMYGLVGSCADLAMVNSSWTQSHIEKLWGI-PDRIKRVYPPCDTSGLQVLPL-------- 263 (380)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ad~ii~~S~~~~~~i~~~~~~-~~k~~vi~~gvd~~~~~~~~~-------- 263 (380)
..... .++++...+.++.++++|+..++.+.+.... .+++.+++||+|...+.+...
T Consensus 116 -------~~~~~-------~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~i~ng~~~~~~~~~~~~~~~~~~~ 181 (360)
T cd04951 116 -------GGRLR-------MLAYRLTDFLSDLTTNVSKEALDYFIASKAFNANKSFVVYNGIDTDRFRKDPARRLKIRNA 181 (360)
T ss_pred -------hhHHH-------HHHHHHHhhccCceEEEcHHHHHHHHhccCCCcccEEEEccccchhhcCcchHHHHHHHHH
Confidence 00000 1122344456788999999999988876543 468999999999776653211
Q ss_pred -CCCCCCCEEEEEecCCCccChHHHHHHHHHHHHHccCCCCCCeEEEEcCCCCCCCHHHHHHHHHHHHhcCCCCcEEEcc
Q 016925 264 -ERSTEYPAIISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYK 342 (380)
Q Consensus 264 -~~~~~~~~il~VGRl~p~K~~d~li~A~~~l~~~~~~~~~~~~LvIvG~g~~~~~~~~~~~L~~la~~lgl~~~V~f~G 342 (380)
...++++.++++||+.+.||++.+++|+..+.++. |+++|+|+|+|+. .++++++++++++.++|.|+|
T Consensus 182 ~~~~~~~~~~l~~g~~~~~kg~~~li~a~~~l~~~~----~~~~l~i~G~g~~------~~~~~~~~~~~~~~~~v~~~g 251 (360)
T cd04951 182 LGVKNDTFVILAVGRLVEAKDYPNLLKAFAKLLSDY----LDIKLLIAGDGPL------RATLERLIKALGLSNRVKLLG 251 (360)
T ss_pred cCcCCCCEEEEEEeeCchhcCcHHHHHHHHHHHhhC----CCeEEEEEcCCCc------HHHHHHHHHhcCCCCcEEEec
Confidence 01134578999999999999999999999997654 8999999998742 367889999999999999999
Q ss_pred CCCHHHHHHHHhhccEEEe-echhhHHH
Q 016925 343 NLLYRSVLTIFMHLFVFTM-KWQLVYDE 369 (380)
Q Consensus 343 ~v~~~el~~ly~~a~vf~~-~~~~~~~~ 369 (380)
.+ +++.++|+.||++++ +..|.||-
T Consensus 252 ~~--~~~~~~~~~ad~~v~~s~~e~~~~ 277 (360)
T cd04951 252 LR--DDIAAYYNAADLFVLSSAWEGFGL 277 (360)
T ss_pred cc--ccHHHHHHhhceEEecccccCCCh
Confidence 86 489999999999887 55577764
No 38
>PRK14098 glycogen synthase; Provisional
Probab=99.86 E-value=1.7e-19 Score=182.09 Aligned_cols=143 Identities=16% Similarity=0.060 Sum_probs=116.7
Q ss_pred HHHHhcCCCEEEEcCHHHHHHHHHH----hCC-------CCceEEecCCCCCCCCCCCCCC-------------------
Q 016925 215 YGLVGSCADLAMVNSSWTQSHIEKL----WGI-------PDRIKRVYPPCDTSGLQVLPLE------------------- 264 (380)
Q Consensus 215 ~~~~~~~ad~ii~~S~~~~~~i~~~----~~~-------~~k~~vi~~gvd~~~~~~~~~~------------------- 264 (380)
.+..++.||.|+|+|+..+++++.. ++. ..++.+|+||+|.+.|.+....
T Consensus 214 lk~~i~~ad~VitVS~~~a~ei~~~~~~~~gl~~~l~~~~~kl~~I~NGID~~~~~p~~d~~~~~~~~~~~~~~k~~~k~ 293 (489)
T PRK14098 214 LYTGVEHADLLTTTSPRYAEEIAGDGEEAFGLDKVLEERKMRLHGILNGIDTRQWNPSTDKLIKKRYSIERLDGKLENKK 293 (489)
T ss_pred HHHHHHhcCcceeeCHHHHHHhCcCCCCCcChHHHHHhcCCCeeEEeCCccccccCCcccccccccCCcchhhhHHHHHH
Confidence 4556788999999999999998752 221 3589999999998877653110
Q ss_pred ---------CCCCCCEEEEEecCCCccChHHHHHHHHHHHHHccCCCCCCeEEEEcCCCCCCCHHHHHHHHHHHHhcCCC
Q 016925 265 ---------RSTEYPAIISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVD 335 (380)
Q Consensus 265 ---------~~~~~~~il~VGRl~p~K~~d~li~A~~~l~~~~~~~~~~~~LvIvG~g~~~~~~~~~~~L~~la~~lgl~ 335 (380)
..++.+.+++|||++++||++.+++|++.+.+ ++++|+|+|+|. .++.++|+++++++ +
T Consensus 294 ~l~~~lgl~~~~~~~~i~~vgRl~~~KG~d~li~a~~~l~~------~~~~lvivG~G~----~~~~~~l~~l~~~~--~ 361 (489)
T PRK14098 294 ALLEEVGLPFDEETPLVGVIINFDDFQGAELLAESLEKLVE------LDIQLVICGSGD----KEYEKRFQDFAEEH--P 361 (489)
T ss_pred HHHHHhCCCCccCCCEEEEeccccccCcHHHHHHHHHHHHh------cCcEEEEEeCCC----HHHHHHHHHHHHHC--C
Confidence 01245799999999999999999999999864 589999999873 34668999999987 4
Q ss_pred CcEEEccCCCHHHHHHHHhhccEEEe-echhhHHH
Q 016925 336 GNVEFYKNLLYRSVLTIFMHLFVFTM-KWQLVYDE 369 (380)
Q Consensus 336 ~~V~f~G~v~~~el~~ly~~a~vf~~-~~~~~~~~ 369 (380)
++|.|.|.++++++..+|+.||+|+| +..|+||-
T Consensus 362 ~~V~~~g~~~~~~~~~~~a~aDi~l~PS~~E~~Gl 396 (489)
T PRK14098 362 EQVSVQTEFTDAFFHLAIAGLDMLLMPGKIESCGM 396 (489)
T ss_pred CCEEEEEecCHHHHHHHHHhCCEEEeCCCCCCchH
Confidence 78999999999999999999999997 66899986
No 39
>cd03792 GT1_Trehalose_phosphorylase Trehalose phosphorylase (TP) reversibly catalyzes trehalose synthesis and degradation from alpha-glucose-1-phosphate (alpha-Glc-1-P) and glucose. The catalyzing activity includes the phosphorolysis of trehalose, which produce alpha-Glc-1-P and glucose, and the subsequent synthesis of trehalose. This family is most closely related to the GT1 family of glycosyltransferases.
Probab=99.86 E-value=1.7e-19 Score=176.36 Aligned_cols=274 Identities=16% Similarity=0.110 Sum_probs=164.0
Q ss_pred EEEEECCCCCCCCChhHHHHHHHHHHHHhCCCceEEEEcCCCCCChhhHH--HHHHhhcCccccCCCeEEEecccccccc
Q 016925 36 SVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYTGDHDAFPDSLL--ARAVDRFGVELLHPPKVVHLYRRKWIEE 113 (380)
Q Consensus 36 ~I~~~~p~~~~~GG~ervl~~la~~L~~~g~~~~v~v~t~~~~~~~~~~~--~~~~~~~g~~l~~~v~~v~l~~~~~~~~ 113 (380)
||+++.+.+ .+||+|+++.+++++|.+.|++++ +++...+ ++... ++... .+. +.++ .++.
T Consensus 1 ki~~~~~~~-~~GGv~~~~~~l~~~l~~~g~~v~--~~~~~~~--~~~~~~~~~~~~----~~~-g~~~-~~~~------ 63 (372)
T cd03792 1 KVLHVNSTP-YGGGVAEILHSLVPLMRDLGVDTR--WEVIKGD--PEFFNVTKKFHN----ALQ-GADI-ELSE------ 63 (372)
T ss_pred CeEEEeCCC-CCCcHHHHHHHHHHHHHHcCCCce--EEecCCC--hhHHHHHHHhhH----hhc-CCCC-CCCH------
Confidence 588888877 568999999999999999995544 5443221 11110 11110 000 0011 1110
Q ss_pred CCCCccceehhhHhHHHH--HHHHHHhcCCcEEEeCCCchhhHHHHhH-hCCcEEEEEeCCcchhhHHHhhhccccccCC
Q 016925 114 STYPRFTMIGQSFGSVYL--SWEALCKFTPLYYFDTSGYAFTYPLARI-FGCRVICYTHYPTISLDMISRVREGSSMYNN 190 (380)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~--~~~~l~~~~pDi~~~~~~~~~~~~l~~~-~~~p~v~~~H~p~~~~~~~~~~~~~~~~~~~ 190 (380)
. ....+..... ..+.+...+||+++.+.......+.+.. .++|.+.++|.....
T Consensus 64 -----~--~~~~~~~~~~~~~~~~~~~~~~Dvv~~h~~~~~~~~~~~~~~~~~~i~~~H~~~~~---------------- 120 (372)
T cd03792 64 -----E--EKEIYLEWNEENAERPLLDLDADVVVIHDPQPLALPLFKKKRGRPWIWRCHIDLSS---------------- 120 (372)
T ss_pred -----H--HHHHHHHHHHHHhccccccCCCCEEEECCCCchhHHHhhhcCCCeEEEEeeeecCC----------------
Confidence 0 0000000000 0001235689987644433333333332 378988888854310
Q ss_pred CccccccchhhhhHHHHHHHHHHHHHHHhcCCCEEEEcCHHHHHHHHHHhCCCCceEEecCCCCCCCCC--CCC------
Q 016925 191 NASIAQSNWLSQCKIVYYTFFSWMYGLVGSCADLAMVNSSWTQSHIEKLWGIPDRIKRVYPPCDTSGLQ--VLP------ 262 (380)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ad~ii~~S~~~~~~i~~~~~~~~k~~vi~~gvd~~~~~--~~~------ 262 (380)
. . .. .|++ .+...+.+|.+++.|+ +.+.+.++ ..+. +++||+|..... ...
T Consensus 121 -----~---~---~~-~~~~----~~~~~~~~d~~i~~~~---~~~~~~~~-~~~~-vipngvd~~~~~~~~~~~~~~~~ 179 (372)
T cd03792 121 -----P---N---RR-VWDF----LQPYIEDYDAAVFHLP---EYVPPQVP-PRKV-IIPPSIDPLSGKNRELSPADIEY 179 (372)
T ss_pred -----C---c---HH-HHHH----HHHHHHhCCEEeecHH---HhcCCCCC-CceE-EeCCCCCCCccccCCCCHHHHHH
Confidence 0 0 00 1111 1234467899998772 22233222 2344 999999964211 110
Q ss_pred ----CCCCCCCCEEEEEecCCCccChHHHHHHHHHHHHHccCCCCCCeEEEEcCCCCCCCHHHHHHHHHHHHhcCCCCcE
Q 016925 263 ----LERSTEYPAIISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNV 338 (380)
Q Consensus 263 ----~~~~~~~~~il~VGRl~p~K~~d~li~A~~~l~~~~~~~~~~~~LvIvG~g~~~~~~~~~~~L~~la~~lgl~~~V 338 (380)
....+++++|+++||+.++||++.+++|++.+.+.. |+++|+|+|+|+.. +.+..+.++++.+.+++.++|
T Consensus 180 ~~~~~~~~~~~~~i~~vgrl~~~Kg~~~ll~a~~~l~~~~----~~~~l~i~G~g~~~-~~~~~~~~~~~~~~~~~~~~v 254 (372)
T cd03792 180 ILEKYGIDPERPYITQVSRFDPWKDPFGVIDAYRKVKERV----PDPQLVLVGSGATD-DPEGWIVYEEVLEYAEGDPDI 254 (372)
T ss_pred HHHHhCCCCCCcEEEEEeccccccCcHHHHHHHHHHHhhC----CCCEEEEEeCCCCC-CchhHHHHHHHHHHhCCCCCe
Confidence 011135689999999999999999999999987653 89999999998532 122334456666678899999
Q ss_pred EEccCC--CHHHHHHHHhhccEEEe-echhhHHHHHHHHH
Q 016925 339 EFYKNL--LYRSVLTIFMHLFVFTM-KWQLVYDEFLKLYL 375 (380)
Q Consensus 339 ~f~G~v--~~~el~~ly~~a~vf~~-~~~~~~~~~~~~~~ 375 (380)
.|+|.. +++++..+|+.||+|++ ++.|.||--+--++
T Consensus 255 ~~~~~~~~~~~~~~~~~~~ad~~v~~s~~Eg~g~~~lEA~ 294 (372)
T cd03792 255 HVLTLPPVSDLEVNALQRASTVVLQKSIREGFGLTVTEAL 294 (372)
T ss_pred EEEecCCCCHHHHHHHHHhCeEEEeCCCccCCCHHHHHHH
Confidence 999986 89999999999999996 77999996554443
No 40
>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional
Probab=99.86 E-value=9.3e-20 Score=178.91 Aligned_cols=144 Identities=11% Similarity=0.062 Sum_probs=116.2
Q ss_pred cCCCEEEEcCHHHHHHHHHHhCCCCceEEecCCCCCCCCCCCCCC-------CCCCCCEEEEEecCCCccChHHHHHHHH
Q 016925 220 SCADLAMVNSSWTQSHIEKLWGIPDRIKRVYPPCDTSGLQVLPLE-------RSTEYPAIISVAQFRPEKAHPLQLEAFS 292 (380)
Q Consensus 220 ~~ad~ii~~S~~~~~~i~~~~~~~~k~~vi~~gvd~~~~~~~~~~-------~~~~~~~il~VGRl~p~K~~d~li~A~~ 292 (380)
+.++.++++|+++++.+.+.++ ..++.+|+||+|.+.|.+.... ...+++.++++||+.++||++.+++|++
T Consensus 138 ~~~~~ii~~S~~~~~~~~~~~~-~~~i~vIpngvd~~~~~~~~~~~~~~~~~~~~~~~~il~~Grl~~~Kg~~~Li~A~~ 216 (380)
T PRK15484 138 DKNAKIIVPSQFLKKFYEERLP-NADISIVPNGFCLETYQSNPQPNLRQQLNISPDETVLLYAGRISPDKGILLLMQAFE 216 (380)
T ss_pred ccCCEEEEcCHHHHHHHHhhCC-CCCEEEecCCCCHHHcCCcchHHHHHHhCCCCCCeEEEEeccCccccCHHHHHHHHH
Confidence 3579999999999999888654 4578999999998766542110 1124578999999999999999999999
Q ss_pred HHHHHccCCCCCCeEEEEcCCCCC---CCHHHHHHHHHHHHhcCCCCcEEEccCCCHHHHHHHHhhccEEEee--chhhH
Q 016925 293 VALRKLDADLPRPRLQFVGSCRNK---SDEERLQSLKDKSIELKVDGNVEFYKNLLYRSVLTIFMHLFVFTMK--WQLVY 367 (380)
Q Consensus 293 ~l~~~~~~~~~~~~LvIvG~g~~~---~~~~~~~~L~~la~~lgl~~~V~f~G~v~~~el~~ly~~a~vf~~~--~~~~~ 367 (380)
.+.+++ |+++|+|+|++... +..+|.+++++++++++ ++|.|+|.++++++.++|+.||+|+++ |.|.|
T Consensus 217 ~l~~~~----p~~~lvivG~g~~~~~~~~~~~~~~l~~~~~~l~--~~v~~~G~~~~~~l~~~~~~aDv~v~pS~~~E~f 290 (380)
T PRK15484 217 KLATAH----SNLKLVVVGDPTASSKGEKAAYQKKVLEAAKRIG--DRCIMLGGQPPEKMHNYYPLADLVVVPSQVEEAF 290 (380)
T ss_pred HHHHhC----CCeEEEEEeCCccccccchhHHHHHHHHHHHhcC--CcEEEeCCCCHHHHHHHHHhCCEEEeCCCCcccc
Confidence 998765 89999999987532 23456678888888876 689999999999999999999999985 46999
Q ss_pred HHH
Q 016925 368 DEF 370 (380)
Q Consensus 368 ~~~ 370 (380)
|.=
T Consensus 291 ~~~ 293 (380)
T PRK15484 291 CMV 293 (380)
T ss_pred ccH
Confidence 853
No 41
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=99.86 E-value=4.4e-19 Score=168.17 Aligned_cols=270 Identities=17% Similarity=0.147 Sum_probs=176.0
Q ss_pred EEEEECCCCCCCCChhHHHHHHHHHHHHhCCCceEEEEcCCCCCChhhHHHHHHhhcCccccCCCeEEEeccccccccCC
Q 016925 36 SVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYTGDHDAFPDSLLARAVDRFGVELLHPPKVVHLYRRKWIEEST 115 (380)
Q Consensus 36 ~I~~~~p~~~~~GG~ervl~~la~~L~~~g~~~~v~v~t~~~~~~~~~~~~~~~~~~g~~l~~~v~~v~l~~~~~~~~~~ 115 (380)
||+++++.+...||+++++.+++++|++.| ++|.+++....... .....+++.+..+..... ..
T Consensus 1 kI~i~~~~~~~~gG~~~~~~~l~~~L~~~g--~~v~v~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~---~~ 64 (348)
T cd03820 1 KILFVIPSLGNAGGAERVLSNLANALAEKG--HEVTIISLDKGEPP-----------FYELDPKIKVIDLGDKRD---SK 64 (348)
T ss_pred CeEEEeccccCCCChHHHHHHHHHHHHhCC--CeEEEEecCCCCCC-----------ccccCCccceeecccccc---cc
Confidence 689999988657999999999999999988 77777765432100 011222333333322100 00
Q ss_pred CCccceehhhHhHHHHHHHHHHhcCCcEEEeCCCchhhHHHHhHhC-CcEEEEEeCCcchhhHHHhhhccccccCCCccc
Q 016925 116 YPRFTMIGQSFGSVYLSWEALCKFTPLYYFDTSGYAFTYPLARIFG-CRVICYTHYPTISLDMISRVREGSSMYNNNASI 194 (380)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~l~~~~pDi~~~~~~~~~~~~l~~~~~-~p~v~~~H~p~~~~~~~~~~~~~~~~~~~~~~~ 194 (380)
.. .... ......+.+++.+||+++.+.............+ +|.+.+.|......
T Consensus 65 ~~--~~~~----~~~~~~~~l~~~~~d~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~------------------- 119 (348)
T cd03820 65 LL--ARFK----KLRRLRKLLKNNKPDVVISFLTSLLTFLASLGLKIVKLIVSEHNSPDAY------------------- 119 (348)
T ss_pred hh--cccc----chHHHHHhhcccCCCEEEEcCchHHHHHHHHhhccccEEEecCCCccch-------------------
Confidence 00 0000 0112234567789998765544311111112234 48888888543210
Q ss_pred cccchhhhhHHHHHHHHHHHHHHHhcCCCEEEEcCHHHHHHHHHHhCCCCceEEecCCCCCCCCCCCCCCCCCCCCEEEE
Q 016925 195 AQSNWLSQCKIVYYTFFSWMYGLVGSCADLAMVNSSWTQSHIEKLWGIPDRIKRVYPPCDTSGLQVLPLERSTEYPAIIS 274 (380)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~l~~~~~~~ad~ii~~S~~~~~~i~~~~~~~~k~~vi~~gvd~~~~~~~~~~~~~~~~~il~ 274 (380)
. ... .+ ...++...+.+|.++++|+.++.... .....++.+++||++...+... ...+++.+++
T Consensus 120 -~---~~~----~~---~~~~~~~~~~~d~ii~~s~~~~~~~~--~~~~~~~~vi~~~~~~~~~~~~---~~~~~~~i~~ 183 (348)
T cd03820 120 -K---KRL----RR---LLLRRLLYRRADAVVVLTEEDRALYY--KKFNKNVVVIPNPLPFPPEEPS---SDLKSKRILA 183 (348)
T ss_pred -h---hhh----HH---HHHHHHHHhcCCEEEEeCHHHHHHhh--ccCCCCeEEecCCcChhhcccc---CCCCCcEEEE
Confidence 0 000 00 01346677899999999999982222 2224689999999987655433 1134689999
Q ss_pred EecCCCccChHHHHHHHHHHHHHccCCCCCCeEEEEcCCCCCCCHHHHHHHHHHHHhcCCCCcEEEccCCCHHHHHHHHh
Q 016925 275 VAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRSVLTIFM 354 (380)
Q Consensus 275 VGRl~p~K~~d~li~A~~~l~~~~~~~~~~~~LvIvG~g~~~~~~~~~~~L~~la~~lgl~~~V~f~G~v~~~el~~ly~ 354 (380)
+||+.+.||++.+++|+..+.+.. ++++|+|+|++.. .+.++++++++++.++|.|.|. .+++.++|+
T Consensus 184 ~g~~~~~K~~~~l~~~~~~l~~~~----~~~~l~i~G~~~~------~~~~~~~~~~~~~~~~v~~~g~--~~~~~~~~~ 251 (348)
T cd03820 184 VGRLVPQKGFDLLIEAWAKIAKKH----PDWKLRIVGDGPE------REALEALIKELGLEDRVILLGF--TKNIEEYYA 251 (348)
T ss_pred EEeeccccCHHHHHHHHHHHHhcC----CCeEEEEEeCCCC------HHHHHHHHHHcCCCCeEEEcCC--cchHHHHHH
Confidence 999999999999999999997643 8999999998642 3577888999999999999998 579999999
Q ss_pred hccEEEe-echhhHHHHHHHH
Q 016925 355 HLFVFTM-KWQLVYDEFLKLY 374 (380)
Q Consensus 355 ~a~vf~~-~~~~~~~~~~~~~ 374 (380)
+||+++. +..|.||-=+-.+
T Consensus 252 ~ad~~i~ps~~e~~~~~~~Ea 272 (348)
T cd03820 252 KASIFVLTSRFEGFPMVLLEA 272 (348)
T ss_pred hCCEEEeCccccccCHHHHHH
Confidence 9999886 4568887544333
No 42
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=99.85 E-value=1.9e-19 Score=170.80 Aligned_cols=274 Identities=20% Similarity=0.234 Sum_probs=179.5
Q ss_pred EEEEECCCCCCCCChhHHHHHHHHHHHHhCCCceEEEEcCCCCCChhhHHHHHHhhcCccccCCCeEEEeccccccccCC
Q 016925 36 SVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYTGDHDAFPDSLLARAVDRFGVELLHPPKVVHLYRRKWIEEST 115 (380)
Q Consensus 36 ~I~~~~p~~~~~GG~ervl~~la~~L~~~g~~~~v~v~t~~~~~~~~~~~~~~~~~~g~~l~~~v~~v~l~~~~~~~~~~ 115 (380)
||+++++... .||+++++.+++++|++.| ++|.+++............. ... ......... ..
T Consensus 1 kIl~~~~~~~-~gG~~~~~~~l~~~l~~~g--~~v~v~~~~~~~~~~~~~~~-----~~~---~~~~~~~~~------~~ 63 (353)
T cd03811 1 KILFVIPSLG-GGGAERVLLNLANGLDKRG--YDVTLVVLRDEGDYLELLPS-----NVK---LIPVRVLKL------KS 63 (353)
T ss_pred CeEEEeeccc-CCCcchhHHHHHHHHHhcC--ceEEEEEcCCCCcccccccc-----chh---hhceeeeec------cc
Confidence 6889999886 6899999999999999888 66777764432110000000 000 000000000 00
Q ss_pred CCccceehhhHhHHHHHHHHHHhcCCcEEEeCCC-chhhHH-HHhHhCCcEEEEEeCCcchhhHHHhhhccccccCCCcc
Q 016925 116 YPRFTMIGQSFGSVYLSWEALCKFTPLYYFDTSG-YAFTYP-LARIFGCRVICYTHYPTISLDMISRVREGSSMYNNNAS 193 (380)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~l~~~~pDi~~~~~~-~~~~~~-l~~~~~~p~v~~~H~p~~~~~~~~~~~~~~~~~~~~~~ 193 (380)
. ...... ....+.+++.+||+++.+.. ...... +....++|.+.++|..... ..
T Consensus 64 ~----~~~~~~---~~~~~~~~~~~~dii~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~---------------- 119 (353)
T cd03811 64 L----RDLLAI---LRLRRLLRKEKPDVVISHLTTTPNVLALLAARLGTKLIVWEHNSLSL-EL---------------- 119 (353)
T ss_pred c----cchhHH---HHHHHHHHhcCCCEEEEcCccchhHHHHHHhhcCCceEEEEcCcchh-hh----------------
Confidence 0 000011 12234567789997664443 221111 1111268999999954421 00
Q ss_pred ccccchhhhhHHHHHHHHHHHHHHHhcCCCEEEEcCHHHHHHHHHHhCC-CCceEEecCCCCCCCCCCCCCC-----CCC
Q 016925 194 IAQSNWLSQCKIVYYTFFSWMYGLVGSCADLAMVNSSWTQSHIEKLWGI-PDRIKRVYPPCDTSGLQVLPLE-----RST 267 (380)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~ad~ii~~S~~~~~~i~~~~~~-~~k~~vi~~gvd~~~~~~~~~~-----~~~ 267 (380)
... .. .. ..++...+.+|.++++|+..++.+.+.++. ..++.+++||+|...+.+.... ...
T Consensus 120 ------~~~-~~-~~----~~~~~~~~~~d~ii~~s~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~ 187 (353)
T cd03811 120 ------KRK-LR-LL----LLIRKLYRRADKIVAVSEGVKEDLLKLLGIPPDKIEVIYNPIDIEEIRALAEEPLELGIPP 187 (353)
T ss_pred ------ccc-hh-HH----HHHHhhccccceEEEeccchhhhHHHhhcCCccccEEecCCcChhhcCcccchhhhcCCCC
Confidence 000 00 00 244567789999999999999999998875 4689999999997766543221 123
Q ss_pred CCCEEEEEecCCCccChHHHHHHHHHHHHHccCCCCCCeEEEEcCCCCCCCHHHHHHHHHHHHhcCCCCcEEEccCCCHH
Q 016925 268 EYPAIISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYR 347 (380)
Q Consensus 268 ~~~~il~VGRl~p~K~~d~li~A~~~l~~~~~~~~~~~~LvIvG~g~~~~~~~~~~~L~~la~~lgl~~~V~f~G~v~~~ 347 (380)
++..++++||+.+.||++.+++|+..+.++. ++++|+|+|.+.. .++++++++++++.++|.|.|.++
T Consensus 188 ~~~~i~~~g~~~~~k~~~~~i~~~~~l~~~~----~~~~l~i~G~~~~------~~~~~~~~~~~~~~~~v~~~g~~~-- 255 (353)
T cd03811 188 DGPVILAVGRLSPQKGFDTLIRAFALLRKEG----PDARLVILGDGPL------REELEALAKELGLADRVHFLGFQS-- 255 (353)
T ss_pred CceEEEEEecchhhcChHHHHHHHHHhhhcC----CCceEEEEcCCcc------HHHHHHHHHhcCCCccEEEecccC--
Confidence 4679999999999999999999999997653 7999999998642 367789999999999999999965
Q ss_pred HHHHHHhhccEEEe-echhhHHHHHHHH
Q 016925 348 SVLTIFMHLFVFTM-KWQLVYDEFLKLY 374 (380)
Q Consensus 348 el~~ly~~a~vf~~-~~~~~~~~~~~~~ 374 (380)
++.++|+.||++++ +..|.||-=+-.+
T Consensus 256 ~~~~~~~~~d~~i~ps~~e~~~~~~~Ea 283 (353)
T cd03811 256 NPYPYLKAADLFVLSSRYEGFPNVLLEA 283 (353)
T ss_pred CHHHHHHhCCEEEeCcccCCCCcHHHHH
Confidence 78899999999886 4557777544333
No 43
>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms.
Probab=99.85 E-value=2.8e-19 Score=180.45 Aligned_cols=144 Identities=17% Similarity=0.066 Sum_probs=113.6
Q ss_pred HHHHHhcCCCEEEEcCHHHHHHHHH---------HhCC-CCceEEecCCCCCCCCCCCCCC-------------------
Q 016925 214 MYGLVGSCADLAMVNSSWTQSHIEK---------LWGI-PDRIKRVYPPCDTSGLQVLPLE------------------- 264 (380)
Q Consensus 214 l~~~~~~~ad~ii~~S~~~~~~i~~---------~~~~-~~k~~vi~~gvd~~~~~~~~~~------------------- 264 (380)
+++..++.||.++|+|+..++++.+ .+.. ..++.+|+||+|.+.+.+....
T Consensus 203 ~~~~~~~~ad~v~~vS~~~~~~i~~~~~~~gl~~~~~~~~~ki~~I~NGid~~~~~p~~~~~~~~~~~~~~~~~~~~~k~ 282 (476)
T cd03791 203 FLKAGIVYADAVTTVSPTYAREILTPEFGEGLDGLLRARAGKLSGILNGIDYDVWNPATDPHLPANYSADDLEGKAENKA 282 (476)
T ss_pred HHHHHHHhcCcCeecCHhHHHHhCCCCCCcchHHHHHhccCCeEEEeCCCcCcccCccccchhhhcCCccccccHHHHHH
Confidence 4566678999999999999988764 1222 4689999999998877653110
Q ss_pred ---------CCCCCCEEEEEecCCCccChHHHHHHHHHHHHHccCCCCCCeEEEEcCCCCCCCHHHHHHHHHHHHhcCCC
Q 016925 265 ---------RSTEYPAIISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVD 335 (380)
Q Consensus 265 ---------~~~~~~~il~VGRl~p~K~~d~li~A~~~l~~~~~~~~~~~~LvIvG~g~~~~~~~~~~~L~~la~~lgl~ 335 (380)
..++.++|+++||++++||++.+++|+..+.+ .+++|+|+|+|. .++.+.++++++++ .
T Consensus 283 ~l~~~~g~~~~~~~~~i~~vGrl~~~Kg~~~li~a~~~l~~------~~~~lvi~G~g~----~~~~~~~~~~~~~~--~ 350 (476)
T cd03791 283 ALQEELGLPVDPDAPLFGFVGRLTEQKGIDLLLEALPELLE------LGGQLVILGSGD----PEYEEALRELAARY--P 350 (476)
T ss_pred HHHHHcCCCcCCCCCEEEEEeeccccccHHHHHHHHHHHHH------cCcEEEEEecCC----HHHHHHHHHHHHhC--C
Confidence 01356899999999999999999999999865 359999999873 35667888888876 6
Q ss_pred CcEEEccCCCHHHHHHHHhhccEEEe-echhhHHH
Q 016925 336 GNVEFYKNLLYRSVLTIFMHLFVFTM-KWQLVYDE 369 (380)
Q Consensus 336 ~~V~f~G~v~~~el~~ly~~a~vf~~-~~~~~~~~ 369 (380)
++|.|.+..+++++..+|+.||++++ +..|+||-
T Consensus 351 ~~v~~~~~~~~~~~~~~~~~aDv~l~pS~~E~~gl 385 (476)
T cd03791 351 GRVAVLIGYDEALAHLIYAGADFFLMPSRFEPCGL 385 (476)
T ss_pred CcEEEEEeCCHHHHHHHHHhCCEEECCCCCCCCcH
Confidence 78887776677788899999999997 55799984
No 44
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=99.85 E-value=7.3e-19 Score=168.81 Aligned_cols=281 Identities=14% Similarity=0.118 Sum_probs=178.3
Q ss_pred EEEEECCCC-CCCCChhHHHHHHHHHHHHhCCCceEEEEcCCCCCChhhHHHHHHhhcCccccCCCeEEEeccccccccC
Q 016925 36 SVAFFHPNT-NDGGGGERVLWCAVKAIQEESPDLDCIVYTGDHDAFPDSLLARAVDRFGVELLHPPKVVHLYRRKWIEES 114 (380)
Q Consensus 36 ~I~~~~p~~-~~~GG~ervl~~la~~L~~~g~~~~v~v~t~~~~~~~~~~~~~~~~~~g~~l~~~v~~v~l~~~~~~~~~ 114 (380)
||+++++.+ ...||.++.+.+++++|++.| |+|++++......... ... .++ ........
T Consensus 1 kil~~~~~~~p~~~G~~~~~~~l~~~L~~~g--~~v~v~~~~~~~~~~~--~~~---~~~------~~~~~~~~------ 61 (374)
T cd03817 1 KIGIFTDTYLPQVNGVATSIRRLAEELEKRG--HEVYVVAPSYPGAPEE--EEV---VVV------RPFRVPTF------ 61 (374)
T ss_pred CeeEeehhccCCCCCeehHHHHHHHHHHHcC--CeEEEEeCCCCCCCcc--ccc---ccc------cccccccc------
Confidence 466666443 446899999999999999998 6777776543211000 000 000 00000000
Q ss_pred CCCccceehhhHhHHHHHHHHHHhcCCcEEEeCCCchhhHH---HHhHhCCcEEEEEeCCcchhhHHHhhhccccccCCC
Q 016925 115 TYPRFTMIGQSFGSVYLSWEALCKFTPLYYFDTSGYAFTYP---LARIFGCRVICYTHYPTISLDMISRVREGSSMYNNN 191 (380)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~l~~~~pDi~~~~~~~~~~~~---l~~~~~~p~v~~~H~p~~~~~~~~~~~~~~~~~~~~ 191 (380)
.+.......... ......++..+||+++.......... +++..++|++.++|.... +......
T Consensus 62 ~~~~~~~~~~~~---~~~~~~~~~~~~Div~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~--------- 127 (374)
T cd03817 62 KYPDFRLPLPIP---RALIIILKELGPDIVHTHTPFSLGLLGLRVARKLGIPVVATYHTMYE--DYTHYVP--------- 127 (374)
T ss_pred hhhhhhccccHH---HHHHHHHhhcCCCEEEECCchhhhhHHHHHHHHcCCCEEEEecCCHH--HHHHHHh---------
Confidence 001110111111 11123467788997664433221111 223457899998885432 1110000
Q ss_pred ccccccchhhhhHHHHHHHHHHHHHHHhcCCCEEEEcCHHHHHHHHHHhCCCCceEEecCCCCCCCCCCCCC-------C
Q 016925 192 ASIAQSNWLSQCKIVYYTFFSWMYGLVGSCADLAMVNSSWTQSHIEKLWGIPDRIKRVYPPCDTSGLQVLPL-------E 264 (380)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ad~ii~~S~~~~~~i~~~~~~~~k~~vi~~gvd~~~~~~~~~-------~ 264 (380)
.. ...... .....+++...+.+|.++++|+..++.+.+.. ...++.+++||+|...+.+.+. .
T Consensus 128 ----~~--~~~~~~---~~~~~~~~~~~~~~d~i~~~s~~~~~~~~~~~-~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~ 197 (374)
T cd03817 128 ----LG--RLLARA---VVRRKLSRRFYNRCDAVIAPSEKIADLLREYG-VKRPIEVIPTGIDLDRFEPVDGDDERRKLG 197 (374)
T ss_pred ----cc--cchhHH---HHHHHHHHHHhhhCCEEEeccHHHHHHHHhcC-CCCceEEcCCccchhccCccchhHHHHhcC
Confidence 00 000000 01114566777899999999999998887743 3456889999999776654321 1
Q ss_pred CCCCCCEEEEEecCCCccChHHHHHHHHHHHHHccCCCCCCeEEEEcCCCCCCCHHHHHHHHHHHHhcCCCCcEEEccCC
Q 016925 265 RSTEYPAIISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNL 344 (380)
Q Consensus 265 ~~~~~~~il~VGRl~p~K~~d~li~A~~~l~~~~~~~~~~~~LvIvG~g~~~~~~~~~~~L~~la~~lgl~~~V~f~G~v 344 (380)
...+++.++++||+.+.||++.+++|++.+.++. ++++|+++|++. ..+.++++++++++.++|.|.|.+
T Consensus 198 ~~~~~~~i~~~G~~~~~k~~~~l~~~~~~~~~~~----~~~~l~i~G~~~------~~~~~~~~~~~~~~~~~v~~~g~~ 267 (374)
T cd03817 198 IPEDEPVLLYVGRLAKEKNIDFLIRAFARLLKEE----PDVKLVIVGDGP------EREELEELARELGLADRVIFTGFV 267 (374)
T ss_pred CCCCCeEEEEEeeeecccCHHHHHHHHHHHHHhC----CCeEEEEEeCCc------hHHHHHHHHHHcCCCCcEEEeccC
Confidence 1234578999999999999999999999987654 899999999863 346889999999999999999999
Q ss_pred CHHHHHHHHhhccEEEee-chhhHHH
Q 016925 345 LYRSVLTIFMHLFVFTMK-WQLVYDE 369 (380)
Q Consensus 345 ~~~el~~ly~~a~vf~~~-~~~~~~~ 369 (380)
+++++..+|+.||+++++ ..|.||-
T Consensus 268 ~~~~~~~~~~~ad~~l~~s~~e~~~~ 293 (374)
T cd03817 268 PREELPDYYKAADLFVFASTTETQGL 293 (374)
T ss_pred ChHHHHHHHHHcCEEEecccccCcCh
Confidence 999999999999999874 4677763
No 45
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=99.85 E-value=4.7e-19 Score=170.46 Aligned_cols=269 Identities=16% Similarity=0.041 Sum_probs=167.0
Q ss_pred EEEEECCCCCCCCChhHHHHHHHHHHHHhCCCceEEEEcCCCCCChhhHHHHHHhhcCccccCCCeEEEeccccccccCC
Q 016925 36 SVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYTGDHDAFPDSLLARAVDRFGVELLHPPKVVHLYRRKWIEEST 115 (380)
Q Consensus 36 ~I~~~~p~~~~~GG~ervl~~la~~L~~~g~~~~v~v~t~~~~~~~~~~~~~~~~~~g~~l~~~v~~v~l~~~~~~~~~~ 115 (380)
||+|+.++....||+++++.+++++|.+.| +++.+++........ . ..... .. ..... .
T Consensus 1 kI~~v~~~~~~~gG~~~~~~~l~~~L~~~g--~~v~v~~~~~~~~~~---~------~~~~~-~~-~~~~~--------~ 59 (366)
T cd03822 1 RIALVSPYPPRKCGIATFTTDLVNALSARG--PDVLVVSVAALYPSL---L------YGGEQ-EV-VRVIV--------L 59 (366)
T ss_pred CeEEecCCCCCCCcHHHHHHHHHHHhhhcC--CeEEEEEeecccCcc---c------CCCcc-cc-eeeee--------c
Confidence 699999998768999999999999999999 556566533211000 0 00000 00 00000 0
Q ss_pred CCccceehhhHhHHHHHHHHHHhcCCcEEEeCCCchhh----H-HHH---hHhCCcEEEEEeCCcchhhHHHhhhccccc
Q 016925 116 YPRFTMIGQSFGSVYLSWEALCKFTPLYYFDTSGYAFT----Y-PLA---RIFGCRVICYTHYPTISLDMISRVREGSSM 187 (380)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~l~~~~pDi~~~~~~~~~~----~-~l~---~~~~~p~v~~~H~p~~~~~~~~~~~~~~~~ 187 (380)
+ .. . ......+.+++.+||+++.+...... . .+. ...+.|+|+++|.....
T Consensus 60 ~-~~---~----~~~~~~~~~~~~~~dii~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~------------- 118 (366)
T cd03822 60 D-NP---L----DYRRAARAIRLSGPDVVVIQHEYGIFGGEAGLYLLLLLRGLGIPVVVTLHTVLLH------------- 118 (366)
T ss_pred C-Cc---h----hHHHHHHHHhhcCCCEEEEeeccccccchhhHHHHHHHhhcCCCEEEEEecCCcc-------------
Confidence 0 00 0 00122345678899976643311110 1 111 12678999999964110
Q ss_pred cCCCccccccchhhhhHHHHHHHHHHHHHHHhcCCCEEEEcCHHHHHHHHHHhCCCCceEEecCCCCCCCCCCCCC----
Q 016925 188 YNNNASIAQSNWLSQCKIVYYTFFSWMYGLVGSCADLAMVNSSWTQSHIEKLWGIPDRIKRVYPPCDTSGLQVLPL---- 263 (380)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ad~ii~~S~~~~~~i~~~~~~~~k~~vi~~gvd~~~~~~~~~---- 263 (380)
. . .. ...++.+...+.+|.++++|....+.+..... .+++.+++||++...+.....
T Consensus 119 --~-----~---~~--------~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~ 179 (366)
T cd03822 119 --E-----P---RP--------GDRALLRLLLRRADAVIVMSSELLRALLLRAY-PEKIAVIPHGVPDPPAEPPESLKAL 179 (366)
T ss_pred --c-----c---ch--------hhhHHHHHHHhcCCEEEEeeHHHHHHHHhhcC-CCcEEEeCCCCcCcccCCchhhHhh
Confidence 0 0 00 01123345667899999997322222222111 368999999998765543211
Q ss_pred CCCCCCCEEEEEecCCCccChHHHHHHHHHHHHHccCCCCCCeEEEEcCCCCCCCHHHHHHHHHHHHhcCCCCcEEEccC
Q 016925 264 ERSTEYPAIISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKN 343 (380)
Q Consensus 264 ~~~~~~~~il~VGRl~p~K~~d~li~A~~~l~~~~~~~~~~~~LvIvG~g~~~~~~~~~~~L~~la~~lgl~~~V~f~G~ 343 (380)
....+++.++++||+.+.||++.+++|++.+.++. ++++|+|+|++..... .......++++++++.++|.|.|.
T Consensus 180 ~~~~~~~~i~~~G~~~~~K~~~~ll~a~~~~~~~~----~~~~l~i~G~~~~~~~-~~~~~~~~~i~~~~~~~~v~~~~~ 254 (366)
T cd03822 180 GGLDGRPVLLTFGLLRPYKGLELLLEALPLLVAKH----PDVRLLVAGETHPDLE-RYRGEAYALAERLGLADRVIFINR 254 (366)
T ss_pred cCCCCCeEEEEEeeccCCCCHHHHHHHHHHHHhhC----CCeEEEEeccCccchh-hhhhhhHhHHHhcCCCCcEEEecC
Confidence 01234679999999999999999999999998764 8999999998743211 111111135888999999999987
Q ss_pred -CCHHHHHHHHhhccEEEeec-hh--hHHHH
Q 016925 344 -LLYRSVLTIFMHLFVFTMKW-QL--VYDEF 370 (380)
Q Consensus 344 -v~~~el~~ly~~a~vf~~~~-~~--~~~~~ 370 (380)
++.+++..+|+.||+++++. .| .|+--
T Consensus 255 ~~~~~~~~~~~~~ad~~v~ps~~e~~~~~~~ 285 (366)
T cd03822 255 YLPDEELPELFSAADVVVLPYRSADQTQSGV 285 (366)
T ss_pred cCCHHHHHHHHhhcCEEEecccccccccchH
Confidence 99999999999999998754 56 56643
No 46
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=99.85 E-value=1.6e-18 Score=164.95 Aligned_cols=279 Identities=19% Similarity=0.172 Sum_probs=183.1
Q ss_pred EEEEECCCCCCC-CChhHHHHHHHHHHHHhCCCceEEEEcCCCCCChhhHHHHHHhhcCccccCCCeEEEeccccccccC
Q 016925 36 SVAFFHPNTNDG-GGGERVLWCAVKAIQEESPDLDCIVYTGDHDAFPDSLLARAVDRFGVELLHPPKVVHLYRRKWIEES 114 (380)
Q Consensus 36 ~I~~~~p~~~~~-GG~ervl~~la~~L~~~g~~~~v~v~t~~~~~~~~~~~~~~~~~~g~~l~~~v~~v~l~~~~~~~~~ 114 (380)
||+++.+..... ||++.++.+++++|.+.| ++|.+++......... .. ... ........
T Consensus 1 kI~ii~~~~~~~~~G~~~~~~~l~~~L~~~g--~~v~i~~~~~~~~~~~--~~----~~~-----~~~~~~~~------- 60 (374)
T cd03801 1 KILLVTPEYPPSVGGAERHVLELARALAARG--HEVTVLTPGDGGLPDE--EE----VGG-----IVVVRPPP------- 60 (374)
T ss_pred CeeEEecccCCccCcHhHHHHHHHHHHHhcC--ceEEEEecCCCCCCce--ee----ecC-----cceecCCc-------
Confidence 578887776555 899999999999999988 7777777543211100 00 000 00000000
Q ss_pred CCCccceehhhHhHHHHHHHHHHhcCCcEEEeCCCchhhHH--HHhHhCCcEEEEEeCCcchhhHHHhhhccccccCCCc
Q 016925 115 TYPRFTMIGQSFGSVYLSWEALCKFTPLYYFDTSGYAFTYP--LARIFGCRVICYTHYPTISLDMISRVREGSSMYNNNA 192 (380)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~l~~~~pDi~~~~~~~~~~~~--l~~~~~~p~v~~~H~p~~~~~~~~~~~~~~~~~~~~~ 192 (380)
....................+...+||+++.......... .++..++|++.++|..... ..
T Consensus 61 -~~~~~~~~~~~~~~~~~~~~~~~~~~Dii~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~-~~--------------- 123 (374)
T cd03801 61 -LLRVRRLLLLLLLALRLRRLLRRERFDVVHAHDWLALLAAALAARLLGIPLVLTVHGLEFG-RP--------------- 123 (374)
T ss_pred -ccccchhHHHHHHHHHHHHHhhhcCCcEEEEechhHHHHHHHHHHhcCCcEEEEeccchhh-cc---------------
Confidence 0000000001111112233467778997664443332222 2335689999999965421 00
Q ss_pred cccccchhhhhHHHHHHHHHHHHHHHhcCCCEEEEcCHHHHHHHHHHhCCC-CceEEecCCCCCCCCCCC------CCCC
Q 016925 193 SIAQSNWLSQCKIVYYTFFSWMYGLVGSCADLAMVNSSWTQSHIEKLWGIP-DRIKRVYPPCDTSGLQVL------PLER 265 (380)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ad~ii~~S~~~~~~i~~~~~~~-~k~~vi~~gvd~~~~~~~------~~~~ 265 (380)
.. . ...........++...+.+|.++++|+.+++.+.+.++.. .++.+++||++...+.+. ....
T Consensus 124 ---~~--~---~~~~~~~~~~~~~~~~~~~d~~i~~s~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 195 (374)
T cd03801 124 ---GN--E---LGLLLKLARALERRALRRADRIIAVSEATREELRELGGVPPEKITVIPNGVDTERFRPAPRAARRRLGI 195 (374)
T ss_pred ---cc--c---hhHHHHHHHHHHHHHHHhCCEEEEecHHHHHHHHhcCCCCCCcEEEecCcccccccCccchHHHhhcCC
Confidence 00 0 0111223334556677899999999999999999887653 589999999987766421 1111
Q ss_pred CCCCCEEEEEecCCCccChHHHHHHHHHHHHHccCCCCCCeEEEEcCCCCCCCHHHHHHHHHHHHhcCCCCcEEEccCCC
Q 016925 266 STEYPAIISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLL 345 (380)
Q Consensus 266 ~~~~~~il~VGRl~p~K~~d~li~A~~~l~~~~~~~~~~~~LvIvG~g~~~~~~~~~~~L~~la~~lgl~~~V~f~G~v~ 345 (380)
..+++.++++||+.+.||++.+++|+..+.+.. ++++|+++|++ +..+.++++++++++.++|.|.|+++
T Consensus 196 ~~~~~~i~~~g~~~~~k~~~~~i~~~~~~~~~~----~~~~l~i~G~~------~~~~~~~~~~~~~~~~~~v~~~g~~~ 265 (374)
T cd03801 196 PEDEPVILFVGRLVPRKGVDLLLEALAKLRKEY----PDVRLVIVGDG------PLREELEALAAELGLGDRVTFLGFVP 265 (374)
T ss_pred cCCCeEEEEecchhhhcCHHHHHHHHHHHhhhc----CCeEEEEEeCc------HHHHHHHHHHHHhCCCcceEEEeccC
Confidence 234578999999999999999999999997764 79999999965 34578889999999999999999999
Q ss_pred HHHHHHHHhhccEEEeec-hhhHHH
Q 016925 346 YRSVLTIFMHLFVFTMKW-QLVYDE 369 (380)
Q Consensus 346 ~~el~~ly~~a~vf~~~~-~~~~~~ 369 (380)
++|+.++|+.||+++++. .|.||-
T Consensus 266 ~~~~~~~~~~~di~i~~~~~~~~~~ 290 (374)
T cd03801 266 DEDLPALYAAADVFVLPSLYEGFGL 290 (374)
T ss_pred hhhHHHHHHhcCEEEecchhccccc
Confidence 999999999999988743 466664
No 47
>PRK14099 glycogen synthase; Provisional
Probab=99.84 E-value=7.4e-19 Score=177.33 Aligned_cols=310 Identities=13% Similarity=-0.003 Sum_probs=179.1
Q ss_pred CCcEEEEEC----CCCCCCCChhHHHHHHHHHHHHhCCCceEEEEcCCCCCChhhHHHHHH--hhcCcccc---------
Q 016925 33 RTTSVAFFH----PNTNDGGGGERVLWCAVKAIQEESPDLDCIVYTGDHDAFPDSLLARAV--DRFGVELL--------- 97 (380)
Q Consensus 33 ~~~~I~~~~----p~~~~~GG~ervl~~la~~L~~~g~~~~v~v~t~~~~~~~~~~~~~~~--~~~g~~l~--------- 97 (380)
.+|+|+|+. |... .||..=|+-.+.++|+++| |+|.|++..++.-.+. ..... ..+.....
T Consensus 2 ~~~~il~v~~E~~p~~k-~ggl~dv~~~lp~~l~~~g--~~v~v~~P~y~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 77 (485)
T PRK14099 2 TPLRVLSVASEIFPLIK-TGGLADVAGALPAALKAHG--VEVRTLVPGYPAVLAG-IEDAEQVHSFPDLFGGPARLLAAR 77 (485)
T ss_pred CCcEEEEEEeccccccC-CCcHHHHHHHHHHHHHHCC--CcEEEEeCCCcchhhh-hcCceEEEEEeeeCCceEEEEEEE
Confidence 469999985 6664 4899999999999999999 5666666554310000 00000 00110000
Q ss_pred -CCCeEEEeccccccccC--CCCcc---ceehhhHhHHHHH---HHHH----HhcCCcEEEeCCCchhhHHH-Hh---Hh
Q 016925 98 -HPPKVVHLYRRKWIEES--TYPRF---TMIGQSFGSVYLS---WEAL----CKFTPLYYFDTSGYAFTYPL-AR---IF 160 (380)
Q Consensus 98 -~~v~~v~l~~~~~~~~~--~~~~~---~~~~~~~~~~~~~---~~~l----~~~~pDi~~~~~~~~~~~~l-~~---~~ 160 (380)
++++++.+....+.... .|... ...-...+..+.+ .+.+ ...+|||+|++...+..+|. .+ ..
T Consensus 78 ~~~v~~~~~~~~~~f~r~~~~y~~~~~~~~~d~~~rf~~f~~a~~~~~~~~~~~~~pDIiH~Hdw~~~l~~~~l~~~~~~ 157 (485)
T PRK14099 78 AGGLDLFVLDAPHLYDRPGNPYVGPDGKDWPDNAQRFAALARAAAAIGQGLVPGFVPDIVHAHDWQAGLAPAYLHYSGRP 157 (485)
T ss_pred eCCceEEEEeChHhhCCCCCCCCCccCCCCCcHHHHHHHHHHHHHHHHhhhccCCCCCEEEECCcHHHHHHHHHHhCCCC
Confidence 23344433221111111 11100 0000111110111 1112 24689998877766555552 22 13
Q ss_pred CCcEEEEEeCCcchhhHHHhhhccccccCCCccccccchhhhhHHHHHHHHHHHHHHHhcCCCEEEEcCHHHHHHHHHHh
Q 016925 161 GCRVICYTHYPTISLDMISRVREGSSMYNNNASIAQSNWLSQCKIVYYTFFSWMYGLVGSCADLAMVNSSWTQSHIEKLW 240 (380)
Q Consensus 161 ~~p~v~~~H~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ad~ii~~S~~~~~~i~~~~ 240 (380)
++|.|.|+|............-. +.+ +.. ..+......++.. ..+.+..++.||.|+|+|+..++++.+.+
T Consensus 158 ~~~~V~TiHn~~~qg~~~~~~~~----~~~---~~~-~~~~~~~~~~~~~-~~~~k~~i~~ad~vitVS~~~a~ei~~~~ 228 (485)
T PRK14099 158 APGTVFTIHNLAFQGQFPRELLG----ALG---LPP-SAFSLDGVEYYGG-IGYLKAGLQLADRITTVSPTYALEIQGPE 228 (485)
T ss_pred CCCEEEeCCCCCCCCcCCHHHHH----HcC---CCh-HHcCchhhhhCCC-ccHHHHHHHhcCeeeecChhHHHHHhccc
Confidence 57899999954321000000000 000 000 0000000000000 01245667889999999999999987532
Q ss_pred ---------CC-CCceEEecCCCCCCCCCCCCC----------------------------CCCCCCCEEEEEecCCCcc
Q 016925 241 ---------GI-PDRIKRVYPPCDTSGLQVLPL----------------------------ERSTEYPAIISVAQFRPEK 282 (380)
Q Consensus 241 ---------~~-~~k~~vi~~gvd~~~~~~~~~----------------------------~~~~~~~~il~VGRl~p~K 282 (380)
+. .+++.+|+||+|++.|.+... ....+.+++++|||++++|
T Consensus 229 ~g~gl~~~l~~~~~ki~vI~NGID~~~f~p~~~~~~~~~~~~~~~~~k~~~k~~l~~~~gl~~~~~~~li~~VgRL~~~K 308 (485)
T PRK14099 229 AGMGLDGLLRQRADRLSGILNGIDTAVWNPATDELIAATYDVETLAARAANKAALQARFGLDPDPDALLLGVISRLSWQK 308 (485)
T ss_pred CCcChHHHHHhhCCCeEEEecCCchhhccccccchhhhcCChhHHHhHHHhHHHHHHHcCCCcccCCcEEEEEecCCccc
Confidence 11 468999999999887765311 0112357899999999999
Q ss_pred ChHHHHHHHHHHHHHccCCCCCCeEEEEcCCCCCCCHHHHHHHHHHHHhcCCCCcE-EEccCCCHHHHHHHH-hhccEEE
Q 016925 283 AHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNV-EFYKNLLYRSVLTIF-MHLFVFT 360 (380)
Q Consensus 283 ~~d~li~A~~~l~~~~~~~~~~~~LvIvG~g~~~~~~~~~~~L~~la~~lgl~~~V-~f~G~v~~~el~~ly-~~a~vf~ 360 (380)
|++.+++|++.+.+ .+++|+|+|+|. .++.+++++++++++ +++ .|+|+ +++++.+| +.||+|+
T Consensus 309 G~d~Li~A~~~l~~------~~~~lvivG~G~----~~~~~~l~~l~~~~~--~~v~~~~G~--~~~l~~~~~a~aDifv 374 (485)
T PRK14099 309 GLDLLLEALPTLLG------EGAQLALLGSGD----AELEARFRAAAQAYP--GQIGVVIGY--DEALAHLIQAGADALL 374 (485)
T ss_pred cHHHHHHHHHHHHh------cCcEEEEEecCC----HHHHHHHHHHHHHCC--CCEEEEeCC--CHHHHHHHHhcCCEEE
Confidence 99999999999864 479999999873 346678999988875 455 78998 67899887 5799999
Q ss_pred e-echhhHHH
Q 016925 361 M-KWQLVYDE 369 (380)
Q Consensus 361 ~-~~~~~~~~ 369 (380)
| +..|+||-
T Consensus 375 ~PS~~E~fGl 384 (485)
T PRK14099 375 VPSRFEPCGL 384 (485)
T ss_pred ECCccCCCcH
Confidence 8 56799984
No 48
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=99.84 E-value=2.7e-18 Score=164.18 Aligned_cols=279 Identities=15% Similarity=0.136 Sum_probs=177.2
Q ss_pred EEEECCCCCC--CCChhHHHHHHHHHHHHhCCCceEEEEcCCCCCChhhHHHHHHhhcCccccCCCeEEEeccccccccC
Q 016925 37 VAFFHPNTND--GGGGERVLWCAVKAIQEESPDLDCIVYTGDHDAFPDSLLARAVDRFGVELLHPPKVVHLYRRKWIEES 114 (380)
Q Consensus 37 I~~~~p~~~~--~GG~ervl~~la~~L~~~g~~~~v~v~t~~~~~~~~~~~~~~~~~~g~~l~~~v~~v~l~~~~~~~~~ 114 (380)
|+++.+.... .||+++++.+++++|++.| ++|++++............. ... ..... ........ .
T Consensus 1 iLii~~~~p~~~~~g~~~~~~~~~~~l~~~g--~~v~v~~~~~~~~~~~~~~~-----~~~-~~~~~-~~~~~~~~---~ 68 (377)
T cd03798 1 ILVISSLYPPPNNGGGGIFVKELARALAKRG--VEVTVLAPGPWGPKLLDLLK-----GRL-VGVER-LPVLLPVV---P 68 (377)
T ss_pred CeEeccCCCCCCCchHHHHHHHHHHHHHHCC--CceEEEecCCCCCCchhhcc-----ccc-ccccc-cccCcchh---h
Confidence 4566655544 5899999999999999988 67777775432111000000 000 00000 00000000 0
Q ss_pred CCCccceehhhHhHHHHHHHHHH--hcCCcEEEeCCCchhhHH---HHhHhCCcEEEEEeCCcchhhHHHhhhccccccC
Q 016925 115 TYPRFTMIGQSFGSVYLSWEALC--KFTPLYYFDTSGYAFTYP---LARIFGCRVICYTHYPTISLDMISRVREGSSMYN 189 (380)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~l~--~~~pDi~~~~~~~~~~~~---l~~~~~~p~v~~~H~p~~~~~~~~~~~~~~~~~~ 189 (380)
............ ....+.++ ..+||+++.+......+. +.+..++|.+.++|...... +
T Consensus 69 ~~~~~~~~~~~~---~~~~~~l~~~~~~~dii~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~------------~- 132 (377)
T cd03798 69 LLKGPLLYLLAA---RALLKLLKLKRFRPDLIHAHFAYPDGFAAALLKRKLGIPLVVTLHGSDVNL------------L- 132 (377)
T ss_pred ccccchhHHHHH---HHHHHHHhcccCCCCEEEEeccchHHHHHHHHHHhcCCCEEEEeecchhcc------------c-
Confidence 000000011111 11223456 788997654433222111 12334679999999654210 0
Q ss_pred CCccccccchhhhhHHHHHHHHHHHHHHHhcCCCEEEEcCHHHHHHHHHHhCCCCceEEecCCCCCCCCCCCCC------
Q 016925 190 NNASIAQSNWLSQCKIVYYTFFSWMYGLVGSCADLAMVNSSWTQSHIEKLWGIPDRIKRVYPPCDTSGLQVLPL------ 263 (380)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ad~ii~~S~~~~~~i~~~~~~~~k~~vi~~gvd~~~~~~~~~------ 263 (380)
.. .. .....++...+.+|.++++|+..++.+.+.+....++.+++||+|...+.+...
T Consensus 133 ------~~--~~--------~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 196 (377)
T cd03798 133 ------PR--KR--------LLRALLRRALRRADAVIAVSEALADELKALGIDPEKVTVIPNGVDTERFSPADRAEARKL 196 (377)
T ss_pred ------Cc--hh--------hHHHHHHHHHhcCCeEEeCCHHHHHHHHHhcCCCCceEEcCCCcCcccCCCcchHHHHhc
Confidence 00 00 122344566789999999999999999887533568999999999876654322
Q ss_pred CCCCCCCEEEEEecCCCccChHHHHHHHHHHHHHccCCCCCCeEEEEcCCCCCCCHHHHHHHHHHHHhcCCCCcEEEccC
Q 016925 264 ERSTEYPAIISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKN 343 (380)
Q Consensus 264 ~~~~~~~~il~VGRl~p~K~~d~li~A~~~l~~~~~~~~~~~~LvIvG~g~~~~~~~~~~~L~~la~~lgl~~~V~f~G~ 343 (380)
....++..++++|++.+.||++.+++|+..+.++. ++++|+|+|.+.. .+.++++++++++.++|.+.|.
T Consensus 197 ~~~~~~~~i~~~g~~~~~k~~~~li~~~~~~~~~~----~~~~l~i~g~~~~------~~~~~~~~~~~~~~~~v~~~g~ 266 (377)
T cd03798 197 GLPEDKKVILFVGRLVPRKGIDYLIEALARLLKKR----PDVHLVIVGDGPL------REALEALAAELGLEDRVTFLGA 266 (377)
T ss_pred cCCCCceEEEEeccCccccCHHHHHHHHHHHHhcC----CCeEEEEEcCCcc------hHHHHHHHHhcCCcceEEEeCC
Confidence 11234678999999999999999999999997653 7999999998642 3578888889999999999999
Q ss_pred CCHHHHHHHHhhccEEEe-echhhHHH
Q 016925 344 LLYRSVLTIFMHLFVFTM-KWQLVYDE 369 (380)
Q Consensus 344 v~~~el~~ly~~a~vf~~-~~~~~~~~ 369 (380)
++++++.++|++||++++ +..|.||-
T Consensus 267 ~~~~~~~~~~~~ad~~i~~~~~~~~~~ 293 (377)
T cd03798 267 VPHEEVPAYYAAADVFVLPSLREGFGL 293 (377)
T ss_pred CCHHHHHHHHHhcCeeecchhhccCCh
Confidence 999999999999999886 44566664
No 49
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=99.83 E-value=2.1e-18 Score=164.90 Aligned_cols=269 Identities=21% Similarity=0.206 Sum_probs=173.3
Q ss_pred EEEEECCCCCCCCChhHHHHHHHHHHHHhCCCceEEEEcCCCCCChhhHHHHHHhhcCccccCCCeEEEeccccccccCC
Q 016925 36 SVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYTGDHDAFPDSLLARAVDRFGVELLHPPKVVHLYRRKWIEEST 115 (380)
Q Consensus 36 ~I~~~~p~~~~~GG~ervl~~la~~L~~~g~~~~v~v~t~~~~~~~~~~~~~~~~~~g~~l~~~v~~v~l~~~~~~~~~~ 115 (380)
||+++.+.+.. ||+++++++++++|.+.| +++.+++...... ..+...+ .+ +++..++... .
T Consensus 1 ~i~~i~~~~~~-gG~~~~~~~l~~~l~~~~--~~v~~~~~~~~~~---~~~~~~~-~~------i~v~~~~~~~-----~ 62 (365)
T cd03807 1 KVLHVITGLDV-GGAERMLVRLLKGLDRDR--FEHVVISLTDRGE---LGEELEE-AG------VPVYCLGKRP-----G 62 (365)
T ss_pred CeEEEEeeccC-ccHHHHHHHHHHHhhhcc--ceEEEEecCcchh---hhHHHHh-cC------CeEEEEeccc-----c
Confidence 68899998865 899999999999999888 5555555332111 1111111 12 2344443211 0
Q ss_pred CCccceehhhHhHHHHHHHHHHhcCCcEEEeCCCchhhHH-H-HhH-hCCcEEEEEeCCcchhhHHHhhhccccccCCCc
Q 016925 116 YPRFTMIGQSFGSVYLSWEALCKFTPLYYFDTSGYAFTYP-L-ARI-FGCRVICYTHYPTISLDMISRVREGSSMYNNNA 192 (380)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~l~~~~pDi~~~~~~~~~~~~-l-~~~-~~~p~v~~~H~p~~~~~~~~~~~~~~~~~~~~~ 192 (380)
... +..+....+.+++.+||++++......... + ... .+.|++++.|......
T Consensus 63 ~~~-------~~~~~~~~~~~~~~~~div~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~----------------- 118 (365)
T cd03807 63 RPD-------PGALLRLYKLIRRLRPDVVHTWMYHADLYGGLAARLAGVPPVIWGIRHSDLDL----------------- 118 (365)
T ss_pred ccc-------HHHHHHHHHHHHhhCCCEEEeccccccHHHHHHHHhcCCCcEEEEecCCcccc-----------------
Confidence 010 011122345577889998765432221111 2 233 5678888888533110
Q ss_pred cccccchhhhhHHHHHHHHHHHHHHHhcCCCEEEEcCHHHHHHHHHHhCCCCceEEecCCCCCCCCCCCCCC--------
Q 016925 193 SIAQSNWLSQCKIVYYTFFSWMYGLVGSCADLAMVNSSWTQSHIEKLWGIPDRIKRVYPPCDTSGLQVLPLE-------- 264 (380)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ad~ii~~S~~~~~~i~~~~~~~~k~~vi~~gvd~~~~~~~~~~-------- 264 (380)
. .+.. .....+.+...+.+|.++++|+.+++.+.+......++.+++||+|...+.+....
T Consensus 119 ---~----~~~~----~~~~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~ 187 (365)
T cd03807 119 ---G----KKST----RLVARLRRLLSSFIPLIVANSAAAAEYHQAIGYPPKKIVVIPNGVDTERFSPDLDARARLREEL 187 (365)
T ss_pred ---c----chhH----hHHHHHHHHhccccCeEEeccHHHHHHHHHcCCChhheeEeCCCcCHHhcCCcccchHHHHHhc
Confidence 0 0001 12223445666789999999999999988752224678899999987655432110
Q ss_pred -CCCCCCEEEEEecCCCccChHHHHHHHHHHHHHccCCCCCCeEEEEcCCCCCCCHHHHHHHHHHHH-hcCCCCcEEEcc
Q 016925 265 -RSTEYPAIISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSI-ELKVDGNVEFYK 342 (380)
Q Consensus 265 -~~~~~~~il~VGRl~p~K~~d~li~A~~~l~~~~~~~~~~~~LvIvG~g~~~~~~~~~~~L~~la~-~lgl~~~V~f~G 342 (380)
...+...++++||+.+.||++.+++|+..+.++. ++++|+|+|.+.. .+.+++++. ++++.++|.|.|
T Consensus 188 ~~~~~~~~i~~~G~~~~~K~~~~li~a~~~l~~~~----~~~~l~i~G~~~~------~~~~~~~~~~~~~~~~~v~~~g 257 (365)
T cd03807 188 GLPEDTFLIGIVARLHPQKDHATLLRAAALLLKKF----PNARLLLVGDGPD------RANLELLALKELGLEDKVILLG 257 (365)
T ss_pred CCCCCCeEEEEecccchhcCHHHHHHHHHHHHHhC----CCeEEEEecCCcc------hhHHHHHHHHhcCCCceEEEcc
Confidence 0134578999999999999999999999997764 8999999998743 234555555 889999999999
Q ss_pred CCCHHHHHHHHhhccEEEee-chhhHHH
Q 016925 343 NLLYRSVLTIFMHLFVFTMK-WQLVYDE 369 (380)
Q Consensus 343 ~v~~~el~~ly~~a~vf~~~-~~~~~~~ 369 (380)
.+ +|+.++|+.||+++++ ..|.||-
T Consensus 258 ~~--~~~~~~~~~adi~v~ps~~e~~~~ 283 (365)
T cd03807 258 ER--SDVPALLNALDVFVLSSLSEGFPN 283 (365)
T ss_pred cc--ccHHHHHHhCCEEEeCCccccCCc
Confidence 75 4899999999998864 3466653
No 50
>PLN02275 transferase, transferring glycosyl groups
Probab=99.83 E-value=3e-18 Score=167.70 Aligned_cols=143 Identities=18% Similarity=0.228 Sum_probs=110.9
Q ss_pred HHHHHHHHHhcCCCEEEEcCHHHHHHHHHHhCCCCceEEecCCCCCCCCCCCCCC---CCCCCCEEEEEecCCCccChHH
Q 016925 210 FFSWMYGLVGSCADLAMVNSSWTQSHIEKLWGIPDRIKRVYPPCDTSGLQVLPLE---RSTEYPAIISVAQFRPEKAHPL 286 (380)
Q Consensus 210 ~~~~l~~~~~~~ad~ii~~S~~~~~~i~~~~~~~~k~~vi~~gvd~~~~~~~~~~---~~~~~~~il~VGRl~p~K~~d~ 286 (380)
.+.++++...+.+|.++++|+.+++.+.+.++.+ +.+|||+. .+.|.+.+.. ...+...++++||+.++||++.
T Consensus 154 ~~~~~e~~~~~~ad~ii~~S~~~~~~l~~~~g~~--i~vi~n~~-~~~f~~~~~~~~~~~~~~~~i~~~grl~~~k~~~~ 230 (371)
T PLN02275 154 LYRWYERHYGKMADGHLCVTKAMQHELDQNWGIR--ATVLYDQP-PEFFRPASLEIRLRPNRPALVVSSTSWTPDEDFGI 230 (371)
T ss_pred HHHHHHHHHHhhCCEEEECCHHHHHHHHHhcCCC--eEEECCCC-HHHcCcCCchhcccCCCcEEEEEeCceeccCCHHH
Confidence 4556677888899999999999999998866643 78999985 3455443211 1122347889999999999999
Q ss_pred HHHHHHHHHHHcc-------------CCCCCCeEEEEcCCCCCCCHHHHHHHHHHHHhcCCCCcEEEcc-CCCHHHHHHH
Q 016925 287 QLEAFSVALRKLD-------------ADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYK-NLLYRSVLTI 352 (380)
Q Consensus 287 li~A~~~l~~~~~-------------~~~~~~~LvIvG~g~~~~~~~~~~~L~~la~~lgl~~~V~f~G-~v~~~el~~l 352 (380)
+++|++.+..+.. +..|+++|+|+|+|+. +++|+++++++|+++ |.|.| .++.++++++
T Consensus 231 li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~i~l~ivG~G~~------~~~l~~~~~~~~l~~-v~~~~~~~~~~~~~~~ 303 (371)
T PLN02275 231 LLEAAVMYDRRVAARLNESDSASGKQSLYPRLLFIITGKGPQ------KAMYEEKISRLNLRH-VAFRTMWLEAEDYPLL 303 (371)
T ss_pred HHHHHHHHHhhhhhccccccccccccccCCCeEEEEEeCCCC------HHHHHHHHHHcCCCc-eEEEcCCCCHHHHHHH
Confidence 9999998853210 1238999999999853 478999999999987 77755 6999999999
Q ss_pred HhhccEEEee
Q 016925 353 FMHLFVFTMK 362 (380)
Q Consensus 353 y~~a~vf~~~ 362 (380)
|+.||+|+++
T Consensus 304 l~~aDv~v~~ 313 (371)
T PLN02275 304 LGSADLGVSL 313 (371)
T ss_pred HHhCCEEEEe
Confidence 9999999863
No 51
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=99.83 E-value=3.3e-18 Score=163.74 Aligned_cols=272 Identities=15% Similarity=0.058 Sum_probs=168.4
Q ss_pred EEEEECCCCCC--CCChhHHHHHHHHHHHHhCCCceEEEEcCCCCCChhhHHHHHHhhcCccccCCCeEEEe-----ccc
Q 016925 36 SVAFFHPNTND--GGGGERVLWCAVKAIQEESPDLDCIVYTGDHDAFPDSLLARAVDRFGVELLHPPKVVHL-----YRR 108 (380)
Q Consensus 36 ~I~~~~p~~~~--~GG~ervl~~la~~L~~~g~~~~v~v~t~~~~~~~~~~~~~~~~~~g~~l~~~v~~v~l-----~~~ 108 (380)
||+|+.+.... .||+++++.+++++|+++| ++|++++.......... . . ........ ...
T Consensus 1 kIl~i~~~~~~~~~gG~~~~~~~l~~~L~~~g--~~v~v~~~~~~~~~~~~--------~--~-~~~~~~~~~~~~~~~~ 67 (359)
T cd03823 1 RILVVNHLYPPRSVGGAEVVAHDLAEALAKRG--HEVAVLTAGEDPPRQDK--------E--V-IGVVVYGRPIDEVLRS 67 (359)
T ss_pred CeeEEcccCCcccccchHHHHHHHHHHHHhcC--CceEEEeCCCCCCCccc--------c--c-ccceeeccccccccCC
Confidence 57888776644 3899999999999999988 66777765432111000 0 0 00001110 000
Q ss_pred cccccCCCCccceehhhHhHHHHHHHHHHhcCCcEEEeCCCchhhHH---HHhHhCCcEEEEEeCCcchhhHHHhhhccc
Q 016925 109 KWIEESTYPRFTMIGQSFGSVYLSWEALCKFTPLYYFDTSGYAFTYP---LARIFGCRVICYTHYPTISLDMISRVREGS 185 (380)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~pDi~~~~~~~~~~~~---l~~~~~~p~v~~~H~p~~~~~~~~~~~~~~ 185 (380)
... ...+.......... .....+.+++.+||+++.+........ .++..++|.+.++|......
T Consensus 68 ~~~-~~~~~~~~~~~~~~--~~~~~~~~~~~~~dii~~~~~~~~~~~~~~~~~~~~~~~i~~~hd~~~~~---------- 134 (359)
T cd03823 68 ALP-RDLFHLSDYDNPAV--VAEFARLLEDFRPDVVHFHHLQGLGVSILRAARDRGIPIVLTLHDYWLIC---------- 134 (359)
T ss_pred Cch-hhhhHHHhccCHHH--HHHHHHHHHHcCCCEEEECCccchHHHHHHHHHhcCCCEEEEEeeeeeec----------
Confidence 000 00000000000000 011224467889998764443222222 22345789999888432100
Q ss_pred cccCCCccccccchhhhhHHHHHHHHHHHHHHHhcCCCEEEEcCHHHHHHHHHHhCCCCceEEecCCCCCCCCCCCCCCC
Q 016925 186 SMYNNNASIAQSNWLSQCKIVYYTFFSWMYGLVGSCADLAMVNSSWTQSHIEKLWGIPDRIKRVYPPCDTSGLQVLPLER 265 (380)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ad~ii~~S~~~~~~i~~~~~~~~k~~vi~~gvd~~~~~~~~~~~ 265 (380)
... ....+..|.++++|++.++.+.+.+....++.+++||+|...+.+.....
T Consensus 135 ---------------~~~------------~~~~~~~d~ii~~s~~~~~~~~~~~~~~~~~~vi~n~~~~~~~~~~~~~~ 187 (359)
T cd03823 135 ---------------PRQ------------GLFKKGGDAVIAPSRFLLDRYVANGLFAEKISVIRNGIDLDRAKRPRRAP 187 (359)
T ss_pred ---------------chh------------hhhccCCCEEEEeCHHHHHHHHHcCCCccceEEecCCcChhhccccccCC
Confidence 000 01112349999999999999888654346889999999987665432111
Q ss_pred CCCCCEEEEEecCCCccChHHHHHHHHHHHHHccCCCCCCeEEEEcCCCCCCCHHHHHHHHHHHHhcCCCCcEEEccCCC
Q 016925 266 STEYPAIISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLL 345 (380)
Q Consensus 266 ~~~~~~il~VGRl~p~K~~d~li~A~~~l~~~~~~~~~~~~LvIvG~g~~~~~~~~~~~L~~la~~lgl~~~V~f~G~v~ 345 (380)
..++..++++||+.+.||++.+++|+..+.+ ++++|+++|.+... ...+... +..++|.|+|+++
T Consensus 188 ~~~~~~i~~~G~~~~~k~~~~li~~~~~l~~------~~~~l~i~G~~~~~------~~~~~~~---~~~~~v~~~g~~~ 252 (359)
T cd03823 188 PGGRLRFGFIGQLTPHKGVDLLLEAFKRLPR------GDIELVIVGNGLEL------EEESYEL---EGDPRVEFLGAYP 252 (359)
T ss_pred CCCceEEEEEecCccccCHHHHHHHHHHHHh------cCcEEEEEcCchhh------hHHHHhh---cCCCeEEEeCCCC
Confidence 2346789999999999999999999998854 58999999987421 1222222 6778999999999
Q ss_pred HHHHHHHHhhccEEEeec--hhhHHHHHHHHH
Q 016925 346 YRSVLTIFMHLFVFTMKW--QLVYDEFLKLYL 375 (380)
Q Consensus 346 ~~el~~ly~~a~vf~~~~--~~~~~~~~~~~~ 375 (380)
++++.++|++||+++++. .|.||--+-.++
T Consensus 253 ~~~~~~~~~~ad~~i~ps~~~e~~~~~~~Ea~ 284 (359)
T cd03823 253 QEEIDDFYAEIDVLVVPSIWPENFPLVIREAL 284 (359)
T ss_pred HHHHHHHHHhCCEEEEcCcccCCCChHHHHHH
Confidence 999999999999999874 699986544443
No 52
>TIGR03087 stp1 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=99.82 E-value=4.1e-18 Score=168.14 Aligned_cols=142 Identities=11% Similarity=0.006 Sum_probs=110.4
Q ss_pred HHHHHHHHHhcCCCEEEEcCHHHHHHHHHHhCC-CCceEEecCCCCCCCCCCCCCCC---CCCCCEEEEEecCCCccChH
Q 016925 210 FFSWMYGLVGSCADLAMVNSSWTQSHIEKLWGI-PDRIKRVYPPCDTSGLQVLPLER---STEYPAIISVAQFRPEKAHP 285 (380)
Q Consensus 210 ~~~~l~~~~~~~ad~ii~~S~~~~~~i~~~~~~-~~k~~vi~~gvd~~~~~~~~~~~---~~~~~~il~VGRl~p~K~~d 285 (380)
.+..+++.+.+.+|.++++|+.+++.+.+.++. ..++.+|+||+|.+.|.+..... ..+++.++|+||+.++||++
T Consensus 161 ~~~~~e~~~~~~ad~vi~~S~~~~~~l~~~~~~~~~~v~vipngvd~~~f~~~~~~~~~~~~~~~~ilf~G~l~~~k~~~ 240 (397)
T TIGR03087 161 LLLAYERAIAARFDAATFVSRAEAELFRRLAPEAAGRITAFPNGVDADFFSPDRDYPNPYPPGKRVLVFTGAMDYWPNID 240 (397)
T ss_pred HHHHHHHHHHhhCCeEEEcCHHHHHHHHHhCCCCCCCeEEeecccchhhcCCCccccCCCCCCCcEEEEEEecCCccCHH
Confidence 445678888899999999999999999887653 46889999999988776532111 12357899999999999999
Q ss_pred HHH----HHHHHHHHHccCCCCCCeEEEEcCCCCCCCHHHHHHHHHHHHhcCCCCcEEEccCCCHHHHHHHHhhccEEEe
Q 016925 286 LQL----EAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRSVLTIFMHLFVFTM 361 (380)
Q Consensus 286 ~li----~A~~~l~~~~~~~~~~~~LvIvG~g~~~~~~~~~~~L~~la~~lgl~~~V~f~G~v~~~el~~ly~~a~vf~~ 361 (380)
.++ ++++.+.++. |+++|+|+|+++. ++++ +++..++|+|+|.++ ++..+|+.||+|++
T Consensus 241 ~l~~~~~~~~~~l~~~~----p~~~l~ivG~g~~-------~~~~----~l~~~~~V~~~G~v~--~~~~~~~~adv~v~ 303 (397)
T TIGR03087 241 AVVWFAERVFPAVRARR----PAAEFYIVGAKPS-------PAVR----ALAALPGVTVTGSVA--DVRPYLAHAAVAVA 303 (397)
T ss_pred HHHHHHHHHHHHHHHHC----CCcEEEEECCCCh-------HHHH----HhccCCCeEEeeecC--CHHHHHHhCCEEEe
Confidence 988 5666666554 8999999998741 2333 345567899999997 68999999999998
Q ss_pred ec--hhhHH
Q 016925 362 KW--QLVYD 368 (380)
Q Consensus 362 ~~--~~~~~ 368 (380)
+. .|.|+
T Consensus 304 Ps~~~eG~~ 312 (397)
T TIGR03087 304 PLRIARGIQ 312 (397)
T ss_pred cccccCCcc
Confidence 74 46665
No 53
>cd03813 GT1_like_3 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.82 E-value=6.7e-19 Score=177.74 Aligned_cols=208 Identities=16% Similarity=0.122 Sum_probs=149.6
Q ss_pred CCcEEEeCC-CchhhHH--HHhHhCCcEEEEEeCCcchhhHHHhhhccccccCCCccccccchhhhhHHHHHHHHHHHHH
Q 016925 140 TPLYYFDTS-GYAFTYP--LARIFGCRVICYTHYPTISLDMISRVREGSSMYNNNASIAQSNWLSQCKIVYYTFFSWMYG 216 (380)
Q Consensus 140 ~pDi~~~~~-~~~~~~~--l~~~~~~p~v~~~H~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 216 (380)
++|++|.+. +++.... +++..++|+|.+.|..... +.... . ..........+..+.+.+..+++
T Consensus 173 ~~dviH~~s~~~~g~~~~~~~~~~~~p~I~t~Hg~~~~-e~~~~-------~-----~~~~~~~~~~~~~~~~~~~~l~~ 239 (475)
T cd03813 173 KADVYHAVSTGYAGLLGALAKARRGTPFLLTEHGIYTR-ERKIE-------L-----LQADWEMSYFRRLWIRFFESLGR 239 (475)
T ss_pred CCCEEeccCcchHHHHHHHHHHHhCCCEEEecCCccHH-HHHHH-------H-----HhcccchHHHHHHHHHHHHHHHH
Confidence 468776443 2221111 2345689999999964211 10000 0 00000012233444456677788
Q ss_pred HHhcCCCEEEEcCHHHHHHHHHHhCCCCceEEecCCCCCCCCCCCCCC-CCCCCCEEEEEecCCCccChHHHHHHHHHHH
Q 016925 217 LVGSCADLAMVNSSWTQSHIEKLWGIPDRIKRVYPPCDTSGLQVLPLE-RSTEYPAIISVAQFRPEKAHPLQLEAFSVAL 295 (380)
Q Consensus 217 ~~~~~ad~ii~~S~~~~~~i~~~~~~~~k~~vi~~gvd~~~~~~~~~~-~~~~~~~il~VGRl~p~K~~d~li~A~~~l~ 295 (380)
.+.+.||.|+++|+..++.+.+....++++.||+||+|.+.|.+.+.. ...+.+.|+++||+.+.||++.+|+|++.+.
T Consensus 240 ~~~~~ad~Ii~~s~~~~~~~~~~g~~~~ki~vIpNgid~~~f~~~~~~~~~~~~~~i~~vGrl~~~Kg~~~li~a~~~l~ 319 (475)
T cd03813 240 LAYQAADRITTLYEGNRERQIEDGADPEKIRVIPNGIDPERFAPARRARPEKEPPVVGLIGRVVPIKDIKTFIRAAAIVR 319 (475)
T ss_pred HHHHhCCEEEecCHHHHHHHHHcCCCHHHeEEeCCCcCHHHcCCccccccCCCCcEEEEEeccccccCHHHHHHHHHHHH
Confidence 888999999999999998776643235689999999998877654321 1234679999999999999999999999998
Q ss_pred HHccCCCCCCeEEEEcCCCCCCCHHHHHHHHHHHHhcCCCCcEEEccCCCHHHHHHHHhhccEEEe-echhhHHH
Q 016925 296 RKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRSVLTIFMHLFVFTM-KWQLVYDE 369 (380)
Q Consensus 296 ~~~~~~~~~~~LvIvG~g~~~~~~~~~~~L~~la~~lgl~~~V~f~G~v~~~el~~ly~~a~vf~~-~~~~~~~~ 369 (380)
++. |+++|+|+|+++ ++.++.++++++++++|+.++|+|+| .+++.++|++||++++ +..|.|+-
T Consensus 320 ~~~----p~~~l~IvG~g~--~~~~~~~e~~~li~~l~l~~~V~f~G---~~~v~~~l~~aDv~vlpS~~Eg~p~ 385 (475)
T cd03813 320 KKI----PDAEGWVIGPTD--EDPEYAEECRELVESLGLEDNVKFTG---FQNVKEYLPKLDVLVLTSISEGQPL 385 (475)
T ss_pred HhC----CCeEEEEECCCC--cChHHHHHHHHHHHHhCCCCeEEEcC---CccHHHHHHhCCEEEeCchhhcCCh
Confidence 764 899999999874 34578899999999999999999999 4689999999999986 56777764
No 54
>PLN00142 sucrose synthase
Probab=99.82 E-value=1.1e-18 Score=181.30 Aligned_cols=300 Identities=14% Similarity=0.051 Sum_probs=171.6
Q ss_pred CCCChhHHHHHHH--------HHHHHhCCCc--eEEEEcCCCC-CChhhHHHHHHhhcCccccCCCeEEEeccccc--cc
Q 016925 46 DGGGGERVLWCAV--------KAIQEESPDL--DCIVYTGDHD-AFPDSLLARAVDRFGVELLHPPKVVHLYRRKW--IE 112 (380)
Q Consensus 46 ~~GG~ervl~~la--------~~L~~~g~~~--~v~v~t~~~~-~~~~~~~~~~~~~~g~~l~~~v~~v~l~~~~~--~~ 112 (380)
..||...++++++ ++|+++|+++ +|.|+|..-+ ..+..+.+..+ .+...+++++++++.+.- .-
T Consensus 301 DtGGQ~vYVl~~aral~~el~~~l~~~G~~v~~~v~i~TR~i~~~~~~~~~~~~e---~v~~~~~~~I~rvP~g~~~~~l 377 (815)
T PLN00142 301 DTGGQVVYILDQVRALENEMLLRIKQQGLDIKPQILIVTRLIPDAKGTTCNQRLE---KVSGTEHSHILRVPFRTEKGIL 377 (815)
T ss_pred CCCCceehHHHHHHHHHHHHHHHHHhcCCCccceeEEEEeccCCccCCcccCcce---eccCCCceEEEecCCCCCcccc
Confidence 4589988998766 5667788544 3568985321 11111111111 011123456666654321 00
Q ss_pred cCCCCccceehhhHhHHHHH-HHHH-H--hcCCcEEEeCCCchhhHH--HHhHhCCcEEEEEeCCcchhhHHHhhhcccc
Q 016925 113 ESTYPRFTMIGQSFGSVYLS-WEAL-C--KFTPLYYFDTSGYAFTYP--LARIFGCRVICYTHYPTISLDMISRVREGSS 186 (380)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~-~~~l-~--~~~pDi~~~~~~~~~~~~--l~~~~~~p~v~~~H~p~~~~~~~~~~~~~~~ 186 (380)
+...+++.++ ..+..+... .+.+ + ..+||++|.+.+-++... ++...++|.|.+.|.... .+.+..
T Consensus 378 ~~~i~ke~l~-p~L~~f~~~~~~~~~~~~~~~PDlIHaHYwdsg~vA~~La~~lgVP~v~T~HsL~k-------~K~~~~ 449 (815)
T PLN00142 378 RKWISRFDVW-PYLETFAEDAASEILAELQGKPDLIIGNYSDGNLVASLLAHKLGVTQCTIAHALEK-------TKYPDS 449 (815)
T ss_pred ccccCHHHHH-HHHHHHHHHHHHHHHHhcCCCCCEEEECCccHHHHHHHHHHHhCCCEEEEcccchh-------hhcccc
Confidence 1112222221 111111110 1111 2 335998886654443222 445679999999995421 122111
Q ss_pred ccCCCccccccchhhhhHHHHHHHH-HHHHHHHhcCCCEEEEcCHHHHHHH----HHH---h------------CC---C
Q 016925 187 MYNNNASIAQSNWLSQCKIVYYTFF-SWMYGLVGSCADLAMVNSSWTQSHI----EKL---W------------GI---P 243 (380)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~ad~ii~~S~~~~~~i----~~~---~------------~~---~ 243 (380)
. ..+ .. ....|...- ...+..++..||.|||.|......+ .++ . +. .
T Consensus 450 ~---~~~-~~------~e~~y~~~~r~~aE~~a~~~Ad~IIasT~qEi~g~~~~i~qy~sh~~f~~p~L~rvv~GId~~~ 519 (815)
T PLN00142 450 D---IYW-KK------FDDKYHFSCQFTADLIAMNHADFIITSTYQEIAGSKDTVGQYESHTAFTLPGLYRVVHGIDVFD 519 (815)
T ss_pred C---Ccc-cc------cchhhhhhhchHHHHHHHHhhhHHHhCcHHHHhcccchhhhhhcccccccchhhhhhccccccc
Confidence 0 000 00 000010000 0135667789999999987665422 111 0 11 3
Q ss_pred CceEEecCCCCCCCCCCCCCC----------------------------CCCCCCEEEEEecCCCccChHHHHHHHHHHH
Q 016925 244 DRIKRVYPPCDTSGLQVLPLE----------------------------RSTEYPAIISVAQFRPEKAHPLQLEAFSVAL 295 (380)
Q Consensus 244 ~k~~vi~~gvd~~~~~~~~~~----------------------------~~~~~~~il~VGRl~p~K~~d~li~A~~~l~ 295 (380)
.++.||+||+|...|.+.... ...++++|++|||++++||++.+|+|++++.
T Consensus 520 ~ki~VVppGvD~~~F~P~~~~~~rl~~l~n~I~~~l~~~~~~~e~lg~l~~~~kpvIl~VGRL~~~KGid~LIeA~a~l~ 599 (815)
T PLN00142 520 PKFNIVSPGADMSIYFPYTEKQKRLTSLHPSIEELLYSPEQNDEHIGYLKDRKKPIIFSMARLDRVKNLTGLVEWYGKNK 599 (815)
T ss_pred cCeeEECCCCChhhcCCCChHHhhHHhhcccchhhcCChHHHHHHhCCccCCCCcEEEEEecCcccCCHHHHHHHHHHHH
Confidence 478899999998877642200 0234679999999999999999999999886
Q ss_pred HHccCCCCCCeEEEEcCCCCC------CCHHHHHHHHHHHHhcCCCCcEEEccCC----CHHHHHHHHhh-ccEEEe-ec
Q 016925 296 RKLDADLPRPRLQFVGSCRNK------SDEERLQSLKDKSIELKVDGNVEFYKNL----LYRSVLTIFMH-LFVFTM-KW 363 (380)
Q Consensus 296 ~~~~~~~~~~~LvIvG~g~~~------~~~~~~~~L~~la~~lgl~~~V~f~G~v----~~~el~~ly~~-a~vf~~-~~ 363 (380)
+.. ++++|+|+|++.+. +..+..++++++++++++.++|.|+|.. +.+++..+|+. +|+|++ ++
T Consensus 600 ~l~----~~~~LVIVGgg~d~~~s~d~ee~~el~~L~~La~~lgL~~~V~flG~~~~~~~~~eLyr~iadaaDVfVlPS~ 675 (815)
T PLN00142 600 RLR----ELVNLVVVGGFIDPSKSKDREEIAEIKKMHSLIEKYNLKGQFRWIAAQTNRVRNGELYRYIADTKGAFVQPAL 675 (815)
T ss_pred HhC----CCcEEEEEECCccccccccHHHHHHHHHHHHHHHHcCCCCcEEEcCCcCCcccHHHHHHHHHhhCCEEEeCCc
Confidence 543 78999999987211 1112345788999999999999999854 34677777774 799997 68
Q ss_pred hhhHHHH
Q 016925 364 QLVYDEF 370 (380)
Q Consensus 364 ~~~~~~~ 370 (380)
.|+||-=
T Consensus 676 ~EgFGLv 682 (815)
T PLN00142 676 YEAFGLT 682 (815)
T ss_pred ccCCCHH
Confidence 9999853
No 55
>PLN02846 digalactosyldiacylglycerol synthase
Probab=99.82 E-value=1.2e-17 Score=165.61 Aligned_cols=129 Identities=16% Similarity=0.065 Sum_probs=97.1
Q ss_pred CCCEEEEcCHHHHHHHHHHhCCCCceEEecCCCCCCCCCCCCC--C---CCCC--CCEEEEEecCCCccChHHHHHHHHH
Q 016925 221 CADLAMVNSSWTQSHIEKLWGIPDRIKRVYPPCDTSGLQVLPL--E---RSTE--YPAIISVAQFRPEKAHPLQLEAFSV 293 (380)
Q Consensus 221 ~ad~ii~~S~~~~~~i~~~~~~~~k~~vi~~gvd~~~~~~~~~--~---~~~~--~~~il~VGRl~p~K~~d~li~A~~~ 293 (380)
.+|.+++.|..+++ +.+ ...+..+|+|.+.|.+... . ...+ .+.++||||+.++||++.+|+|++.
T Consensus 180 ~~d~vi~pS~~~~~-l~~------~~i~~v~GVd~~~f~~~~~~~~~~~~~~~~~~~~~l~vGRL~~eK~~~~Li~a~~~ 252 (462)
T PLN02846 180 YCHKVIRLSAATQD-YPR------SIICNVHGVNPKFLEIGKLKLEQQKNGEQAFTKGAYYIGKMVWSKGYKELLKLLHK 252 (462)
T ss_pred hcCEEEccCHHHHH-Hhh------CEEecCceechhhcCCCcccHhhhcCCCCCcceEEEEEecCcccCCHHHHHHHHHH
Confidence 38999999985554 332 1223347999877664211 0 0111 2358999999999999999999999
Q ss_pred HHHHccCCCCCCeEEEEcCCCCCCCHHHHHHHHHHHHhcCCCCcEEEccCCCHHHHHHHHhhccEEEe-echhhHHHH
Q 016925 294 ALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRSVLTIFMHLFVFTM-KWQLVYDEF 370 (380)
Q Consensus 294 l~~~~~~~~~~~~LvIvG~g~~~~~~~~~~~L~~la~~lgl~~~V~f~G~v~~~el~~ly~~a~vf~~-~~~~~~~~~ 370 (380)
+.+.. ++++|+|+|+|+. +++|+++++++++..+| |.|..+. .++|+.+|+|++ +..|.||.=
T Consensus 253 l~~~~----~~~~l~ivGdGp~------~~~L~~~a~~l~l~~~v-f~G~~~~---~~~~~~~DvFv~pS~~Et~g~v 316 (462)
T PLN02846 253 HQKEL----SGLEVDLYGSGED------SDEVKAAAEKLELDVRV-YPGRDHA---DPLFHDYKVFLNPSTTDVVCTT 316 (462)
T ss_pred HHhhC----CCeEEEEECCCcc------HHHHHHHHHhcCCcEEE-ECCCCCH---HHHHHhCCEEEECCCcccchHH
Confidence 87654 8999999999853 57899999999998666 8887543 379999999997 778888854
No 56
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=99.81 E-value=8.6e-18 Score=161.87 Aligned_cols=292 Identities=14% Similarity=0.080 Sum_probs=174.6
Q ss_pred EEEEECCCCC-CCCChhHHHHHHHHHHHHhCCCceEEEEcCCCCCChhhHHHHHHhhcCccccCCCeEEEeccccccccC
Q 016925 36 SVAFFHPNTN-DGGGGERVLWCAVKAIQEESPDLDCIVYTGDHDAFPDSLLARAVDRFGVELLHPPKVVHLYRRKWIEES 114 (380)
Q Consensus 36 ~I~~~~p~~~-~~GG~ervl~~la~~L~~~g~~~~v~v~t~~~~~~~~~~~~~~~~~~g~~l~~~v~~v~l~~~~~~~~~ 114 (380)
||+++.+... ..||.++.+.+++++|++.| ++|.+++............. +.....+++++..+.........
T Consensus 1 kIl~i~~~~~~~~~G~~~~~~~l~~~L~~~g--~~v~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~ 74 (394)
T cd03794 1 KILILSQYFPPELGGGAFRTTELAEELVKRG--HEVTVITGSPNYPSGKIYKG----YKREEVDGVRVHRVPLPPYKKNG 74 (394)
T ss_pred CEEEEecccCCccCCcceeHHHHHHHHHhCC--ceEEEEecCCCccccccccc----ceEEecCCeEEEEEecCCCCccc
Confidence 5788877653 33899999999999999988 77777775432111000000 00011123344433221100000
Q ss_pred CCCccceehhhHhHHHHHHHHH--HhcCCcEEEeCC-CchhhHHH---HhHhCCcEEEEEeCCcchhhHHHhhhcccccc
Q 016925 115 TYPRFTMIGQSFGSVYLSWEAL--CKFTPLYYFDTS-GYAFTYPL---ARIFGCRVICYTHYPTISLDMISRVREGSSMY 188 (380)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~l--~~~~pDi~~~~~-~~~~~~~l---~~~~~~p~v~~~H~p~~~~~~~~~~~~~~~~~ 188 (380)
.+. .....+.........+ +..+||+++... ......+. ++..++|.+.++|..... ... ..
T Consensus 75 ~~~---~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~-~~~----~~---- 142 (394)
T cd03794 75 LLK---RLLNYLSFALSALLALLKRRRRPDVIIATSPPLLIALAALLLARLKGAPFVLEVRDLWPE-SAV----AL---- 142 (394)
T ss_pred hHH---HHHhhhHHHHHHHHHHHhcccCCCEEEEcCChHHHHHHHHHHHHhcCCCEEEEehhhcch-hHH----Hc----
Confidence 000 0000000001111223 377899766443 22212221 223478999999853311 100 00
Q ss_pred CCCccccccchhhhhHHHHHHHHHHHHHHHhcCCCEEEEcCHHHHHHHHHHhCCCCceEEecCCCCCCCCCCCCC-----
Q 016925 189 NNNASIAQSNWLSQCKIVYYTFFSWMYGLVGSCADLAMVNSSWTQSHIEKLWGIPDRIKRVYPPCDTSGLQVLPL----- 263 (380)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ad~ii~~S~~~~~~i~~~~~~~~k~~vi~~gvd~~~~~~~~~----- 263 (380)
. .... .....+....+++...+.+|.++++|+..++.+........++.+++||++...+.+...
T Consensus 143 -~--~~~~-------~~~~~~~~~~~~~~~~~~~d~vi~~s~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 212 (394)
T cd03794 143 -G--LLKN-------GSLLYRLLRKLERLIYRRADAIVVISPGMREYLVRRGVPPEKISVIPNGVDLELFKPPPADESLR 212 (394)
T ss_pred -c--Cccc-------cchHHHHHHHHHHHHHhcCCEEEEECHHHHHHHHhcCCCcCceEEcCCCCCHHHcCCccchhhhh
Confidence 0 0000 011112344566778889999999999999988732222468899999998665543221
Q ss_pred --CCCCCCCEEEEEecCCCccChHHHHHHHHHHHHHccCCCCCCeEEEEcCCCCCCCHHHHHHHHHHHHhcCCCCcEEEc
Q 016925 264 --ERSTEYPAIISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFY 341 (380)
Q Consensus 264 --~~~~~~~~il~VGRl~p~K~~d~li~A~~~l~~~~~~~~~~~~LvIvG~g~~~~~~~~~~~L~~la~~lgl~~~V~f~ 341 (380)
....++..++++||+.++||++.+++|+..+.+. ++++|+|+|++.. .+.+++++...++ ++|.|.
T Consensus 213 ~~~~~~~~~~i~~~G~~~~~k~~~~l~~~~~~l~~~-----~~~~l~i~G~~~~------~~~~~~~~~~~~~-~~v~~~ 280 (394)
T cd03794 213 KELGLDDKFVVLYAGNIGRAQGLDTLLEAAALLKDR-----PDIRFLIVGDGPE------KEELKELAKALGL-DNVTFL 280 (394)
T ss_pred hccCCCCcEEEEEecCcccccCHHHHHHHHHHHhhc-----CCeEEEEeCCccc------HHHHHHHHHHcCC-CcEEEe
Confidence 1123457899999999999999999999998653 6899999998642 3567777777666 579999
Q ss_pred cCCCHHHHHHHHhhccEEEe-echhhH
Q 016925 342 KNLLYRSVLTIFMHLFVFTM-KWQLVY 367 (380)
Q Consensus 342 G~v~~~el~~ly~~a~vf~~-~~~~~~ 367 (380)
|.++++++.++|+.||++++ ...|.+
T Consensus 281 g~~~~~~~~~~~~~~di~i~~~~~~~~ 307 (394)
T cd03794 281 GRVPKEELPELLAAADVGLVPLKPGPA 307 (394)
T ss_pred CCCChHHHHHHHHhhCeeEEeccCccc
Confidence 99999999999999999886 444544
No 57
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=99.81 E-value=2.4e-17 Score=156.99 Aligned_cols=276 Identities=17% Similarity=0.090 Sum_probs=172.7
Q ss_pred EEEEECCCCCCCCChhHHHHHHHHHHHHhCCCceEEEEcCCCCCChhhHHHHHHhhcCccccCCCeEEEeccccccccCC
Q 016925 36 SVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYTGDHDAFPDSLLARAVDRFGVELLHPPKVVHLYRRKWIEEST 115 (380)
Q Consensus 36 ~I~~~~p~~~~~GG~ervl~~la~~L~~~g~~~~v~v~t~~~~~~~~~~~~~~~~~~g~~l~~~v~~v~l~~~~~~~~~~ 115 (380)
||+++.+. .||.++++.+++++|.+.| ++|++++....... ... ..++.+..++... .
T Consensus 1 kIl~i~~~---~~g~~~~~~~l~~~L~~~g--~~v~~~~~~~~~~~--~~~----------~~~~~~~~~~~~~-----~ 58 (359)
T cd03808 1 KILHIVTV---DGGLYSFRLPLIKALRAAG--YEVHVVAPPGDELE--ELE----------ALGVKVIPIPLDR-----R 58 (359)
T ss_pred CeeEEEec---chhHHHHHHHHHHHHHhcC--CeeEEEecCCCccc--ccc----------cCCceEEeccccc-----c
Confidence 57888886 5899999999999999988 77777775532110 000 0122333332210 0
Q ss_pred CCccceehhhHhHHHHHHHHHHhcCCcEEEeCCCchhhHH-H-Hh-HhCCcEEEEEeCCcchhhHHHhhhccccccCCCc
Q 016925 116 YPRFTMIGQSFGSVYLSWEALCKFTPLYYFDTSGYAFTYP-L-AR-IFGCRVICYTHYPTISLDMISRVREGSSMYNNNA 192 (380)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~l~~~~pDi~~~~~~~~~~~~-l-~~-~~~~p~v~~~H~p~~~~~~~~~~~~~~~~~~~~~ 192 (380)
... . ...+..+....+.+++.+||+++.......... + ++ ....+++...|..... .
T Consensus 59 ~~~--~-~~~~~~~~~~~~~~~~~~~dvv~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~--------------- 118 (359)
T cd03808 59 GIN--P-FKDLKALLRLYRLLRKERPDIVHTHTPKPGILGRLAARLAGVPKVIYTVHGLGFV--F--------------- 118 (359)
T ss_pred ccC--h-HhHHHHHHHHHHHHHhcCCCEEEEccccchhHHHHHHHHcCCCCEEEEecCcchh--h---------------
Confidence 000 0 011111122234567889997664433222222 2 22 2334455555532210 0
Q ss_pred cccccchhhhhHHHHHHHHHHHHHHHhcCCCEEEEcCHHHHHHHHHHhCC--CCceEEecCCCCCCCCCCCCCCCCCCCC
Q 016925 193 SIAQSNWLSQCKIVYYTFFSWMYGLVGSCADLAMVNSSWTQSHIEKLWGI--PDRIKRVYPPCDTSGLQVLPLERSTEYP 270 (380)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ad~ii~~S~~~~~~i~~~~~~--~~k~~vi~~gvd~~~~~~~~~~~~~~~~ 270 (380)
... ...+..+..+++...+.+|.++++|+..++.+.+.+.. ..++.++++++|.+.+.+.+.....++.
T Consensus 119 --~~~-------~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (359)
T cd03808 119 --TSG-------GLKRRLYLLLERLALRFTDKVIFQNEDDRDLALKLGIIKKKKTVLIPGSGVDLDRFSPSPEPIPEDDP 189 (359)
T ss_pred --ccc-------hhHHHHHHHHHHHHHhhccEEEEcCHHHHHHHHHhcCCCcCceEEecCCCCChhhcCccccccCCCCc
Confidence 000 00223445566777889999999999999999887654 2456566778887665543220123468
Q ss_pred EEEEEecCCCccChHHHHHHHHHHHHHccCCCCCCeEEEEcCCCCCCCHHHHHHHHH-HHHhcCCCCcEEEccCCCHHHH
Q 016925 271 AIISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKD-KSIELKVDGNVEFYKNLLYRSV 349 (380)
Q Consensus 271 ~il~VGRl~p~K~~d~li~A~~~l~~~~~~~~~~~~LvIvG~g~~~~~~~~~~~L~~-la~~lgl~~~V~f~G~v~~~el 349 (380)
.++++||+.+.||++.+++++..+.++. ++++|+|+|.+.... ..+. ++.+++..++|.|.|+ .+++
T Consensus 190 ~i~~~G~~~~~k~~~~li~~~~~l~~~~----~~~~l~i~G~~~~~~------~~~~~~~~~~~~~~~v~~~g~--~~~~ 257 (359)
T cd03808 190 VFLFVARLLKDKGIDELLEAARILKAKG----PNVRLLLVGDGDEEN------PAAILEIEKLGLEGRVEFLGF--RDDV 257 (359)
T ss_pred EEEEEeccccccCHHHHHHHHHHHHhcC----CCeEEEEEcCCCcch------hhHHHHHHhcCCcceEEEeec--cccH
Confidence 9999999999999999999999997654 899999999875321 1122 4777888999999998 4689
Q ss_pred HHHHhhccEEEe-echhhHHHHHHHH
Q 016925 350 LTIFMHLFVFTM-KWQLVYDEFLKLY 374 (380)
Q Consensus 350 ~~ly~~a~vf~~-~~~~~~~~~~~~~ 374 (380)
.++|++||++++ +..|.||--+-.+
T Consensus 258 ~~~~~~adi~i~ps~~e~~~~~~~Ea 283 (359)
T cd03808 258 PELLAAADVFVLPSYREGLPRVLLEA 283 (359)
T ss_pred HHHHHhccEEEecCcccCcchHHHHH
Confidence 999999999887 4457777544333
No 58
>PRK10125 putative glycosyl transferase; Provisional
Probab=99.81 E-value=4.2e-18 Score=168.30 Aligned_cols=129 Identities=16% Similarity=0.120 Sum_probs=97.4
Q ss_pred HHhcCCCEEEEcCHHHHHHHHHHhCCCCceEEecCCCCCCCCCC---C-CCCCCCCCCEEEEEecC--CCccChHHHHHH
Q 016925 217 LVGSCADLAMVNSSWTQSHIEKLWGIPDRIKRVYPPCDTSGLQV---L-PLERSTEYPAIISVAQF--RPEKAHPLQLEA 290 (380)
Q Consensus 217 ~~~~~ad~ii~~S~~~~~~i~~~~~~~~k~~vi~~gvd~~~~~~---~-~~~~~~~~~~il~VGRl--~p~K~~d~li~A 290 (380)
.+.+.++.+|++|++.++.+.+.++ ..++.|||||+|++.+.. . +.....+++.++++||. .+.||++.+++|
T Consensus 186 ~~~~~~~~iV~~S~~l~~~~~~~~~-~~~i~vI~NGid~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~Kg~~~li~A 264 (405)
T PRK10125 186 EMLALGCQFISPSQHVADAFNSLYG-PGRCRIINNGIDMATEAILAELPPVRETQGKPKIAVVAHDLRYDGKTDQQLVRE 264 (405)
T ss_pred HHhhcCcEEEEcCHHHHHHHHHHcC-CCCEEEeCCCcCcccccccccccccccCCCCCEEEEEEeccccCCccHHHHHHH
Confidence 3445678999999999999888776 468999999999643221 1 11112346789999994 478999999999
Q ss_pred HHHHHHHccCCCCCCeEEEEcCCCCCCCHHHHHHHHHHHHhcCCCCcEEEccCC-CHHHHHHHHhhccEEEe-echhhHH
Q 016925 291 FSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNL-LYRSVLTIFMHLFVFTM-KWQLVYD 368 (380)
Q Consensus 291 ~~~l~~~~~~~~~~~~LvIvG~g~~~~~~~~~~~L~~la~~lgl~~~V~f~G~v-~~~el~~ly~~a~vf~~-~~~~~~~ 368 (380)
++.+. ++++|+|+|+++.. ..++|.++|.. +++++.++|++||+|++ +..|.||
T Consensus 265 ~~~l~-------~~~~L~ivG~g~~~-----------------~~~~v~~~g~~~~~~~l~~~y~~aDvfV~pS~~Egfp 320 (405)
T PRK10125 265 MMALG-------DKIELHTFGKFSPF-----------------TAGNVVNHGFETDKRKLMSALNQMDALVFSSRVDNYP 320 (405)
T ss_pred HHhCC-------CCeEEEEEcCCCcc-----------------cccceEEecCcCCHHHHHHHHHhCCEEEECCccccCc
Confidence 99762 57999999986310 02468899976 56789999999999997 7788887
Q ss_pred HH
Q 016925 369 EF 370 (380)
Q Consensus 369 ~~ 370 (380)
--
T Consensus 321 ~v 322 (405)
T PRK10125 321 LI 322 (405)
T ss_pred CH
Confidence 43
No 59
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.81 E-value=7.4e-18 Score=161.82 Aligned_cols=271 Identities=18% Similarity=0.116 Sum_probs=166.8
Q ss_pred EEEEECCCCCCC-CChhHHHHHHHHHHHHhCCCceEEEEcCCCCCChhhHHHHHHhhcCccccCCCeEEEeccccccccC
Q 016925 36 SVAFFHPNTNDG-GGGERVLWCAVKAIQEESPDLDCIVYTGDHDAFPDSLLARAVDRFGVELLHPPKVVHLYRRKWIEES 114 (380)
Q Consensus 36 ~I~~~~p~~~~~-GG~ervl~~la~~L~~~g~~~~v~v~t~~~~~~~~~~~~~~~~~~g~~l~~~v~~v~l~~~~~~~~~ 114 (380)
||+++.+..... ||+++.+.+++++|+++| |+|.+++...... ..... + ...++ ....+
T Consensus 1 kIl~i~~~~~p~~~G~~~~~~~l~~~L~~~g--~~v~~~~~~~~~~-~~~~~---~--~~~~~----~~~~~-------- 60 (364)
T cd03814 1 RIAIVTDTFLPQVNGVVRTLQRLVEHLRARG--HEVLVIAPGPFRE-SEGPA---R--VVPVP----SVPLP-------- 60 (364)
T ss_pred CeEEEecccCccccceehHHHHHHHHHHHCC--CEEEEEeCCchhh-ccCCC---C--ceeec----ccccC--------
Confidence 577777555443 899999999999999988 7788887553210 00000 0 00000 00000
Q ss_pred CCCccceehhhHhHHHHHHHHHHhcCCcEEEeCCCchhhHH---HHhHhCCcEEEEEeCCcchhhHHHhhhccccccCCC
Q 016925 115 TYPRFTMIGQSFGSVYLSWEALCKFTPLYYFDTSGYAFTYP---LARIFGCRVICYTHYPTISLDMISRVREGSSMYNNN 191 (380)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~l~~~~pDi~~~~~~~~~~~~---l~~~~~~p~v~~~H~p~~~~~~~~~~~~~~~~~~~~ 191 (380)
.+.......... ....+.+++.+||+++.......... .++..++|.+.++|.... ... .. +
T Consensus 61 ~~~~~~~~~~~~---~~~~~~~~~~~pdii~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~---~~----~--- 125 (364)
T cd03814 61 GYPEIRLALPPR---RRVRRLLDAFAPDVVHIATPGPLGLAALRAARRLGIPVVTSYHTDFP--EYL---RY----Y--- 125 (364)
T ss_pred cccceEecccch---hhHHHHHHhcCCCEEEEeccchhhHHHHHHHHHcCCCEEEEEecChH--HHh---hh----c---
Confidence 000000000000 11223457889997653322221111 233467999998885321 110 00 0
Q ss_pred ccccccchhhhhHHHHHHHHHHHHHHHhcCCCEEEEcCHHHHHHHHHHhCCCCceEEecCCCCCCCCCCCCCCC------
Q 016925 192 ASIAQSNWLSQCKIVYYTFFSWMYGLVGSCADLAMVNSSWTQSHIEKLWGIPDRIKRVYPPCDTSGLQVLPLER------ 265 (380)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ad~ii~~S~~~~~~i~~~~~~~~k~~vi~~gvd~~~~~~~~~~~------ 265 (380)
. .... ......+.+.+.+.+|.++++|+..++.+.+.. ..++.++++|+|.+.+.+.....
T Consensus 126 ----~---~~~~----~~~~~~~~~~~~~~~d~i~~~s~~~~~~~~~~~--~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 192 (364)
T cd03814 126 ----G---LGPL----SWLAWAYLRWFHNRADRVLVPSPSLADELRARG--FRRVRLWPRGVDTELFHPRRRDEALRARL 192 (364)
T ss_pred ----c---cchH----hHhhHHHHHHHHHhCCEEEeCCHHHHHHHhccC--CCceeecCCCccccccCcccccHHHHHHh
Confidence 0 0011 111233455667889999999999998655432 25788999999977665421110
Q ss_pred -CCCCCEEEEEecCCCccChHHHHHHHHHHHHHccCCCCCCeEEEEcCCCCCCCHHHHHHHHHHHHhcCCCCcEEEccCC
Q 016925 266 -STEYPAIISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNL 344 (380)
Q Consensus 266 -~~~~~~il~VGRl~p~K~~d~li~A~~~l~~~~~~~~~~~~LvIvG~g~~~~~~~~~~~L~~la~~lgl~~~V~f~G~v 344 (380)
..++..++++||+.+.||++.+++++..+.++ ++++|+|+|++.. .+.++ +..++|.|.|.+
T Consensus 193 ~~~~~~~i~~~G~~~~~k~~~~~i~~~~~l~~~-----~~~~l~i~G~~~~------~~~~~------~~~~~v~~~g~~ 255 (364)
T cd03814 193 GPPDRPVLLYVGRLAPEKNLEALLDADLPLRRR-----PPVRLVIVGDGPA------RARLE------ARYPNVHFLGFL 255 (364)
T ss_pred CCCCCeEEEEEeccccccCHHHHHHHHHHhhhc-----CCceEEEEeCCch------HHHHh------ccCCcEEEEecc
Confidence 12357899999999999999999999998652 6899999998642 23333 567899999999
Q ss_pred CHHHHHHHHhhccEEEe-echhhHHHHH
Q 016925 345 LYRSVLTIFMHLFVFTM-KWQLVYDEFL 371 (380)
Q Consensus 345 ~~~el~~ly~~a~vf~~-~~~~~~~~~~ 371 (380)
+.+++.++|+.||++++ +..|.||.=+
T Consensus 256 ~~~~~~~~~~~~d~~l~~s~~e~~~~~~ 283 (364)
T cd03814 256 DGEELAAAYASADVFVFPSRTETFGLVV 283 (364)
T ss_pred CHHHHHHHHHhCCEEEECcccccCCcHH
Confidence 99999999999999886 4577777433
No 60
>TIGR02918 accessory Sec system glycosylation protein GtfA. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus. Members are associated with glycosylation of serine-rich glycoproteins exported by the accessory Sec system.
Probab=99.74 E-value=9.6e-17 Score=162.21 Aligned_cols=136 Identities=10% Similarity=0.071 Sum_probs=111.6
Q ss_pred hcCCCEEEEcCHHHHHHHHHHhCC----CCceEEecCCCCCCCCCCCCCCCCCCCCEEEEEecCCCccChHHHHHHHHHH
Q 016925 219 GSCADLAMVNSSWTQSHIEKLWGI----PDRIKRVYPPCDTSGLQVLPLERSTEYPAIISVAQFRPEKAHPLQLEAFSVA 294 (380)
Q Consensus 219 ~~~ad~ii~~S~~~~~~i~~~~~~----~~k~~vi~~gvd~~~~~~~~~~~~~~~~~il~VGRl~p~K~~d~li~A~~~l 294 (380)
.+.+|.+|++|+..++.+.+.++. ..++.++++|++...+.+. .. .+...|+++||+.++||++.+|+|++++
T Consensus 268 ~~~~D~iI~~S~~~~~~l~~~~~~~~~~~~ki~viP~g~~~~~~~~~--~~-r~~~~il~vGrl~~~Kg~~~li~A~~~l 344 (500)
T TIGR02918 268 ADYIDFFITATDIQNQILKNQFKKYYNIEPRIYTIPVGSLDELQYPE--QE-RKPFSIITASRLAKEKHIDWLVKAVVKA 344 (500)
T ss_pred hhhCCEEEECCHHHHHHHHHHhhhhcCCCCcEEEEcCCCcccccCcc--cc-cCCeEEEEEeccccccCHHHHHHHHHHH
Confidence 467899999999999988876542 3578899999764433321 11 2345799999999999999999999999
Q ss_pred HHHccCCCCCCeEEEEcCCCCCCCHHHHHHHHHHHHhcCCCCcEEEccCCCHHHHHHHHhhccEEEe-echhhHHHH
Q 016925 295 LRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRSVLTIFMHLFVFTM-KWQLVYDEF 370 (380)
Q Consensus 295 ~~~~~~~~~~~~LvIvG~g~~~~~~~~~~~L~~la~~lgl~~~V~f~G~v~~~el~~ly~~a~vf~~-~~~~~~~~~ 370 (380)
.+.. |+++|+|+|+|+ ..++|++++++++++++|.|+|++ ++.++|+.||+|++ ++.|.||-=
T Consensus 345 ~~~~----p~~~l~i~G~G~------~~~~l~~~i~~~~l~~~V~f~G~~---~~~~~~~~adv~v~pS~~Egfgl~ 408 (500)
T TIGR02918 345 KKSV----PELTFDIYGEGG------EKQKLQKIINENQAQDYIHLKGHR---NLSEVYKDYELYLSASTSEGFGLT 408 (500)
T ss_pred HhhC----CCeEEEEEECch------hHHHHHHHHHHcCCCCeEEEcCCC---CHHHHHHhCCEEEEcCccccccHH
Confidence 8765 999999999874 247899999999999999999975 58899999999997 778999854
No 61
>PLN02501 digalactosyldiacylglycerol synthase
Probab=99.73 E-value=1.5e-15 Score=153.72 Aligned_cols=196 Identities=10% Similarity=0.010 Sum_probs=128.9
Q ss_pred HHHHHhcCCcEEE-eCCCchhhH--H--HHhHhCCcEEEEEeCCcchhhHHHhhhccccccCCCccccccchhhhhHHHH
Q 016925 133 WEALCKFTPLYYF-DTSGYAFTY--P--LARIFGCRVICYTHYPTISLDMISRVREGSSMYNNNASIAQSNWLSQCKIVY 207 (380)
Q Consensus 133 ~~~l~~~~pDi~~-~~~~~~~~~--~--l~~~~~~p~v~~~H~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (380)
.+.+..++|||+| .+....... . .++..+ |+|..+|+... .++. ... .++++.+.
T Consensus 427 ~~~L~~f~PDVVHLatP~~LGw~~~Glr~ArKl~-PVVasyHTny~--eYl~----------------~y~-~g~L~~~l 486 (794)
T PLN02501 427 SQFIPSKDADIAILEEPEHLNWYHHGKRWTDKFN-HVVGVVHTNYL--EYIK----------------REK-NGALQAFF 486 (794)
T ss_pred HHHhhccCCCEEEECCchhhccHHHHHHHHHHcC-CeEEEEeCCcH--HHHh----------------Hhc-chhHHHHH
Confidence 3567889999765 444332223 1 233345 88888996542 1111 110 12233322
Q ss_pred HHHHHHHHHHHhcCCCEEEEcCHHHHHHHHHHhCCCCceEEecCCCCCCCCCCCCC-------CCCCCCCEEEEEecCCC
Q 016925 208 YTFFSWMYGLVGSCADLAMVNSSWTQSHIEKLWGIPDRIKRVYPPCDTSGLQVLPL-------ERSTEYPAIISVAQFRP 280 (380)
Q Consensus 208 ~~~~~~l~~~~~~~ad~ii~~S~~~~~~i~~~~~~~~k~~vi~~gvd~~~~~~~~~-------~~~~~~~~il~VGRl~p 280 (380)
+++..++.... .||.|+++|..+++ + + ...+. ..+|||++.|.+... ......+.++||||+.+
T Consensus 487 lk~l~~~v~r~--hcD~VIaPS~atq~-L----~-~~vI~-nVnGVDte~F~P~~r~~~~r~lgi~~~~kgiLfVGRLa~ 557 (794)
T PLN02501 487 VKHINNWVTRA--YCHKVLRLSAATQD-L----P-KSVIC-NVHGVNPKFLKIGEKVAEERELGQQAFSKGAYFLGKMVW 557 (794)
T ss_pred HHHHHHHHHHh--hCCEEEcCCHHHHH-h----c-cccee-ecccccccccCCcchhHHHHhcCCccccCceEEEEcccc
Confidence 22222222222 28999999987773 2 2 11122 226999988876321 01111245899999999
Q ss_pred ccChHHHHHHHHHHHHHccCCCCCCeEEEEcCCCCCCCHHHHHHHHHHHHhcCCCCcEEEccCCCHHHHHHHHhhccEEE
Q 016925 281 EKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRSVLTIFMHLFVFT 360 (380)
Q Consensus 281 ~K~~d~li~A~~~l~~~~~~~~~~~~LvIvG~g~~~~~~~~~~~L~~la~~lgl~~~V~f~G~v~~~el~~ly~~a~vf~ 360 (380)
+||++.||+|++.+.+.. ++++|+|+|+|+. .++|++++.++++. |.|+|..+ +..++|+.+|+|+
T Consensus 558 EKGld~LLeAla~L~~~~----pnvrLvIVGDGP~------reeLe~la~eLgL~--V~FLG~~d--d~~~lyasaDVFV 623 (794)
T PLN02501 558 AKGYRELIDLLAKHKNEL----DGFNLDVFGNGED------AHEVQRAAKRLDLN--LNFLKGRD--HADDSLHGYKVFI 623 (794)
T ss_pred cCCHHHHHHHHHHHHhhC----CCeEEEEEcCCcc------HHHHHHHHHHcCCE--EEecCCCC--CHHHHHHhCCEEE
Confidence 999999999999987654 8999999999853 47899999999984 99999865 5668999999999
Q ss_pred e-echhhHHHHH
Q 016925 361 M-KWQLVYDEFL 371 (380)
Q Consensus 361 ~-~~~~~~~~~~ 371 (380)
+ +..|.||--+
T Consensus 624 lPS~sEgFGlVl 635 (794)
T PLN02501 624 NPSISDVLCTAT 635 (794)
T ss_pred ECCCcccchHHH
Confidence 7 7889998654
No 62
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=99.71 E-value=1.8e-15 Score=146.04 Aligned_cols=137 Identities=14% Similarity=0.022 Sum_probs=103.3
Q ss_pred cCCCEEEEcCHHHHHHHHHHhCC-CCceEEecCCCCCCCCCCCCC-------CCCCCCCEEEEEecCCC--ccChHHHHH
Q 016925 220 SCADLAMVNSSWTQSHIEKLWGI-PDRIKRVYPPCDTSGLQVLPL-------ERSTEYPAIISVAQFRP--EKAHPLQLE 289 (380)
Q Consensus 220 ~~ad~ii~~S~~~~~~i~~~~~~-~~k~~vi~~gvd~~~~~~~~~-------~~~~~~~~il~VGRl~p--~K~~d~li~ 289 (380)
..++.++++|++.++.+.+.++. ..++.+++||+|.+.+.+... ....++..+++.|+... .||++.+++
T Consensus 134 ~~~~~~v~~s~~~~~~~~~~~~~~~~~~~vi~ngi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~K~~~~ll~ 213 (365)
T cd03825 134 DLNLTIVAPSRWLADCARSSSLFKGIPIEVIPNGIDTTIFRPRDKREARKRLGLPADKKIILFGAVGGTDPRKGFDELIE 213 (365)
T ss_pred cCCcEEEehhHHHHHHHHhccccCCCceEEeCCCCcccccCCCcHHHHHHHhCCCCCCeEEEEEecCCCccccCHHHHHH
Confidence 57789999999999998887643 468999999999876644211 11123456667777765 899999999
Q ss_pred HHHHHHHHccCCCCCCeEEEEcCCCCCCCHHHHHHHHHHHHhcCCCCcEEEccCCC-HHHHHHHHhhccEEEe-echhhH
Q 016925 290 AFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLL-YRSVLTIFMHLFVFTM-KWQLVY 367 (380)
Q Consensus 290 A~~~l~~~~~~~~~~~~LvIvG~g~~~~~~~~~~~L~~la~~lgl~~~V~f~G~v~-~~el~~ly~~a~vf~~-~~~~~~ 367 (380)
|++.+.++ ..++++++++|++... .+ .++.++|.|+|+++ ++++..+|+.||++++ +..|.|
T Consensus 214 a~~~l~~~---~~~~~~~~i~G~~~~~--------~~-----~~~~~~v~~~g~~~~~~~~~~~~~~ad~~l~ps~~e~~ 277 (365)
T cd03825 214 ALKRLAER---WKDDIELVVFGASDPE--------IP-----PDLPFPVHYLGSLNDDESLALIYSAADVFVVPSLQENF 277 (365)
T ss_pred HHHHhhhc---cCCCeEEEEeCCCchh--------hh-----ccCCCceEecCCcCCHHHHHHHHHhCCEEEeccccccc
Confidence 99998653 1379999999986421 11 15678999999998 8899999999999987 556888
Q ss_pred HHHHH
Q 016925 368 DEFLK 372 (380)
Q Consensus 368 ~~~~~ 372 (380)
|-=+-
T Consensus 278 g~~~~ 282 (365)
T cd03825 278 PNTAI 282 (365)
T ss_pred cHHHH
Confidence 85443
No 63
>cd04946 GT1_AmsK_like This family is most closely related to the GT1 family of glycosyltransferases. AmsK is involved in the biosynthesis of amylovoran, which functions as a virulence factor. It functions as a glycosyl transferase which transfers galactose from UDP-galactose to a lipid-linked amylovoran-subunit precursor. The members of this family are found mainly in bacteria and Archaea.
Probab=99.69 E-value=1.8e-15 Score=149.98 Aligned_cols=142 Identities=18% Similarity=0.189 Sum_probs=116.9
Q ss_pred HHHhcCCCEEEEcCHHHHHHHHHHhCC-CCceEEecCCCCCCCCCCCCCCCCCCCCEEEEEecCCCccChHHHHHHHHHH
Q 016925 216 GLVGSCADLAMVNSSWTQSHIEKLWGI-PDRIKRVYPPCDTSGLQVLPLERSTEYPAIISVAQFRPEKAHPLQLEAFSVA 294 (380)
Q Consensus 216 ~~~~~~ad~ii~~S~~~~~~i~~~~~~-~~k~~vi~~gvd~~~~~~~~~~~~~~~~~il~VGRl~p~K~~d~li~A~~~l 294 (380)
+.+++.+|.++++|+..++.+.+.++. .+++.++++|++...+...+ ...++..++++||+.+.||++.+++|++.+
T Consensus 178 ~~~~~~~d~ii~~S~~~~~~l~~~~~~~~~ki~vi~~gv~~~~~~~~~--~~~~~~~il~~Grl~~~Kg~~~li~a~~~l 255 (407)
T cd04946 178 RYLLSSLDAVFPCSEQGRNYLQKRYPAYKEKIKVSYLGVSDPGIISKP--SKDDTLRIVSCSYLVPVKRVDLIIKALAAL 255 (407)
T ss_pred HHHHhcCCEEEECCHHHHHHHHHHCCCccccEEEEECCcccccccCCC--CCCCCEEEEEeeccccccCHHHHHHHHHHH
Confidence 345678999999999999999988876 46888999999876554321 123457899999999999999999999999
Q ss_pred HHHccCCCC--CCeEEEEcCCCCCCCHHHHHHHHHHHHhcCCCCcEEEccCCCHHHHHHHHhh--ccEEEe-echhhHHH
Q 016925 295 LRKLDADLP--RPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRSVLTIFMH--LFVFTM-KWQLVYDE 369 (380)
Q Consensus 295 ~~~~~~~~~--~~~LvIvG~g~~~~~~~~~~~L~~la~~lgl~~~V~f~G~v~~~el~~ly~~--a~vf~~-~~~~~~~~ 369 (380)
.+.. | +++++++|+|. ..+.+++++++++..++|.|+|+++++|+..+|+. +|+|++ +..|.|+-
T Consensus 256 ~~~~----p~~~l~~~iiG~g~------~~~~l~~~~~~~~~~~~V~f~G~v~~~e~~~~~~~~~~~v~v~~S~~Eg~p~ 325 (407)
T cd04946 256 AKAR----PSIKIKWTHIGGGP------LEDTLKELAESKPENISVNFTGELSNSEVYKLYKENPVDVFVNLSESEGLPV 325 (407)
T ss_pred HHhC----CCceEEEEEEeCch------HHHHHHHHHHhcCCCceEEEecCCChHHHHHHHhhcCCCEEEeCCccccccH
Confidence 8764 4 56678899863 34789999999999999999999999999999986 677875 77888874
No 64
>cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltra
Probab=99.67 E-value=2.6e-15 Score=146.37 Aligned_cols=138 Identities=17% Similarity=0.165 Sum_probs=113.9
Q ss_pred hcCCCEEEEcCHHHHHHHHHHhCCCCceEEecCCCCCCCCCCCCCCCCCCCCEEEEEecCCCccChHHHHHHHHHHHHHc
Q 016925 219 GSCADLAMVNSSWTQSHIEKLWGIPDRIKRVYPPCDTSGLQVLPLERSTEYPAIISVAQFRPEKAHPLQLEAFSVALRKL 298 (380)
Q Consensus 219 ~~~ad~ii~~S~~~~~~i~~~~~~~~k~~vi~~gvd~~~~~~~~~~~~~~~~~il~VGRl~p~K~~d~li~A~~~l~~~~ 298 (380)
.+.+|.+++.|+.+++.+.+.++...++.++++|++...+.+.+.. ..++..++++||+.++||++.+|+|+..+.++.
T Consensus 155 ~~~~d~ii~~s~~~~~~l~~~~~~~~~v~~ip~g~~~~~~~~~~~~-~~~~~~i~~vgrl~~~K~~~~li~a~~~l~~~~ 233 (372)
T cd04949 155 LDKVDGVIVATEQQKQDLQKQFGNYNPIYTIPVGSIDPLKLPAQFK-QRKPHKIITVARLAPEKQLDQLIKAFAKVVKQV 233 (372)
T ss_pred hhhCCEEEEccHHHHHHHHHHhCCCCceEEEcccccChhhcccchh-hcCCCeEEEEEccCcccCHHHHHHHHHHHHHhC
Confidence 4679999999999999999888754458899999987655543111 124578999999999999999999999998765
Q ss_pred cCCCCCCeEEEEcCCCCCCCHHHHHHHHHHHHhcCCCCcEEEccCCCHHHHHHHHhhccEEEe-echhhHHH
Q 016925 299 DADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRSVLTIFMHLFVFTM-KWQLVYDE 369 (380)
Q Consensus 299 ~~~~~~~~LvIvG~g~~~~~~~~~~~L~~la~~lgl~~~V~f~G~v~~~el~~ly~~a~vf~~-~~~~~~~~ 369 (380)
|+++|+|+|.|.. .+.+++++++++++++|.|.|+. +++.++|+.||++++ +..|.||-
T Consensus 234 ----~~~~l~i~G~g~~------~~~~~~~~~~~~~~~~v~~~g~~--~~~~~~~~~ad~~v~~S~~Eg~~~ 293 (372)
T cd04949 234 ----PDATLDIYGYGDE------EEKLKELIEELGLEDYVFLKGYT--RDLDEVYQKAQLSLLTSQSEGFGL 293 (372)
T ss_pred ----CCcEEEEEEeCch------HHHHHHHHHHcCCcceEEEcCCC--CCHHHHHhhhhEEEecccccccCh
Confidence 8999999998742 35778888999999999999964 589999999999886 56788874
No 65
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=99.67 E-value=8.5e-15 Score=142.33 Aligned_cols=253 Identities=9% Similarity=0.057 Sum_probs=151.5
Q ss_pred CcEEEEECCCCCCCCChhHHHHHHHHHHHHhCCCceEEEEcCCCCCChhhHHHHHHhhcCccccCCCeEEEecccccccc
Q 016925 34 TTSVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYTGDHDAFPDSLLARAVDRFGVELLHPPKVVHLYRRKWIEE 113 (380)
Q Consensus 34 ~~~I~~~~p~~~~~GG~ervl~~la~~L~~~g~~~~v~v~t~~~~~~~~~~~~~~~~~~g~~l~~~v~~v~l~~~~~~~~ 113 (380)
+|||.+..... ||.++++.+++++|+++| |+|++++...+... ...++ .++++..++.......
T Consensus 1 ~~~i~i~~~g~---gG~~~~~~~la~~L~~~g--~ev~vv~~~~~~~~----~~~~~-------~g~~~~~~~~~~~~~~ 64 (357)
T PRK00726 1 MKKILLAGGGT---GGHVFPALALAEELKKRG--WEVLYLGTARGMEA----RLVPK-------AGIEFHFIPSGGLRRK 64 (357)
T ss_pred CcEEEEEcCcc---hHhhhHHHHHHHHHHhCC--CEEEEEECCCchhh----hcccc-------CCCcEEEEeccCcCCC
Confidence 47888887644 799999999999999998 77777775432101 11110 1233444432110000
Q ss_pred CCCCccceehhhHhHHHHHHHHHHhcCCcEEEeCCCchhhHH-H-HhHhCCcEEEEEeCCcchhhHHHhhhccccccCCC
Q 016925 114 STYPRFTMIGQSFGSVYLSWEALCKFTPLYYFDTSGYAFTYP-L-ARIFGCRVICYTHYPTISLDMISRVREGSSMYNNN 191 (380)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~l~~~~pDi~~~~~~~~~~~~-l-~~~~~~p~v~~~H~p~~~~~~~~~~~~~~~~~~~~ 191 (380)
....+.......+..+....+.+++++||+++++....+... + ++..++|.+++.|...
T Consensus 65 ~~~~~l~~~~~~~~~~~~~~~~ik~~~pDvv~~~~~~~~~~~~~~~~~~~~p~v~~~~~~~------------------- 125 (357)
T PRK00726 65 GSLANLKAPFKLLKGVLQARKILKRFKPDVVVGFGGYVSGPGGLAARLLGIPLVIHEQNAV------------------- 125 (357)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECCCcchhHHHHHHHHcCCCEEEEcCCCC-------------------
Confidence 000000001111222233445678889999887654332222 2 3456789886544211
Q ss_pred ccccccchhhhhHHHHHHHHHHHHHHHhcCCCEEEEcCHHHHHHHHHHhCCCCceEEecCCCCCCCCCCCCC----CCCC
Q 016925 192 ASIAQSNWLSQCKIVYYTFFSWMYGLVGSCADLAMVNSSWTQSHIEKLWGIPDRIKRVYPPCDTSGLQVLPL----ERST 267 (380)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ad~ii~~S~~~~~~i~~~~~~~~k~~vi~~gvd~~~~~~~~~----~~~~ 267 (380)
... ..++..+.+|.+++.++.+. .+ ....++.+++||++.+.+.+... ...+
T Consensus 126 --------~~~-----------~~r~~~~~~d~ii~~~~~~~---~~--~~~~~i~vi~n~v~~~~~~~~~~~~~~~~~~ 181 (357)
T PRK00726 126 --------PGL-----------ANKLLARFAKKVATAFPGAF---PE--FFKPKAVVTGNPVREEILALAAPPARLAGRE 181 (357)
T ss_pred --------ccH-----------HHHHHHHHhchheECchhhh---hc--cCCCCEEEECCCCChHhhcccchhhhccCCC
Confidence 000 11233456899999887432 22 22478999999998754443111 1112
Q ss_pred CCCEEEEEecCCCccChHHHH-HHHHHHHHHccCCCCCCeEEEEcCCCCCCCHHHHHHHHHHHHhcCCCCcEEEccCCCH
Q 016925 268 EYPAIISVAQFRPEKAHPLQL-EAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLY 346 (380)
Q Consensus 268 ~~~~il~VGRl~p~K~~d~li-~A~~~l~~~~~~~~~~~~LvIvG~g~~~~~~~~~~~L~~la~~lgl~~~V~f~G~v~~ 346 (380)
+.+.++++|+..+.|++..++ +|++++.+. + ..++++|++. .+++++..+ +++. |.|.|++
T Consensus 182 ~~~~i~~~gg~~~~~~~~~~l~~a~~~~~~~-----~-~~~~~~G~g~-------~~~~~~~~~-~~~~--v~~~g~~-- 243 (357)
T PRK00726 182 GKPTLLVVGGSQGARVLNEAVPEALALLPEA-----L-QVIHQTGKGD-------LEEVRAAYA-AGIN--AEVVPFI-- 243 (357)
T ss_pred CCeEEEEECCcHhHHHHHHHHHHHHHHhhhC-----c-EEEEEcCCCc-------HHHHHHHhh-cCCc--EEEeehH--
Confidence 457889999999999876666 999887431 3 5678889863 245565556 7775 9999997
Q ss_pred HHHHHHHhhccEEEeec
Q 016925 347 RSVLTIFMHLFVFTMKW 363 (380)
Q Consensus 347 ~el~~ly~~a~vf~~~~ 363 (380)
+++.++|+.||++++..
T Consensus 244 ~~~~~~~~~~d~~i~~~ 260 (357)
T PRK00726 244 DDMAAAYAAADLVICRA 260 (357)
T ss_pred hhHHHHHHhCCEEEECC
Confidence 58999999999999864
No 66
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=99.65 E-value=2.6e-14 Score=138.15 Aligned_cols=243 Identities=15% Similarity=0.123 Sum_probs=145.0
Q ss_pred CCChhHHHHHHHHHHHHhCCCceEEEEcCCCCCChhhHHHHHHhhcCccccCCCeEEEeccccccccCCCCccceehhhH
Q 016925 47 GGGGERVLWCAVKAIQEESPDLDCIVYTGDHDAFPDSLLARAVDRFGVELLHPPKVVHLYRRKWIEESTYPRFTMIGQSF 126 (380)
Q Consensus 47 ~GG~ervl~~la~~L~~~g~~~~v~v~t~~~~~~~~~~~~~~~~~~g~~l~~~v~~v~l~~~~~~~~~~~~~~~~~~~~~ 126 (380)
.||.++++.+++++|+++| |+|+++|....... +. .+. .++++..++.........+.........+
T Consensus 9 ~gG~~~~~~~la~~l~~~G--~ev~v~~~~~~~~~----~~------~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (350)
T cd03785 9 TGGHIFPALALAEELRERG--AEVLFLGTKRGLEA----RL------VPK-AGIPLHTIPVGGLRRKGSLKKLKAPFKLL 75 (350)
T ss_pred chhhhhHHHHHHHHHHhCC--CEEEEEECCCcchh----hc------ccc-cCCceEEEEecCcCCCChHHHHHHHHHHH
Confidence 3799999999999999999 77888875432110 00 000 12334443321100000000000011111
Q ss_pred hHHHHHHHHHHhcCCcEEEeCCCchhhHH---HHhHhCCcEEEEEeCCcchhhHHHhhhccccccCCCccccccchhhhh
Q 016925 127 GSVYLSWEALCKFTPLYYFDTSGYAFTYP---LARIFGCRVICYTHYPTISLDMISRVREGSSMYNNNASIAQSNWLSQC 203 (380)
Q Consensus 127 ~~~~~~~~~l~~~~pDi~~~~~~~~~~~~---l~~~~~~p~v~~~H~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (380)
..+....+.+++.+||+++.+.... +.+ .++..++|++++.|... ...
T Consensus 76 ~~~~~~~~~i~~~~pDvI~~~~~~~-~~~~~~~a~~~~~p~v~~~~~~~---------------------------~~~- 126 (350)
T cd03785 76 KGVLQARKILKKFKPDVVVGFGGYV-SGPVGLAAKLLGIPLVIHEQNAV---------------------------PGL- 126 (350)
T ss_pred HHHHHHHHHHHhcCCCEEEECCCCc-chHHHHHHHHhCCCEEEEcCCCC---------------------------ccH-
Confidence 1112223457888999877554432 222 23456788876543211 000
Q ss_pred HHHHHHHHHHHHHHHhcCCCEEEEcCHHHHHHHHHHhCCCCceEEecCCCCCCCCCCCC----CCCCCCCCEEEEEecCC
Q 016925 204 KIVYYTFFSWMYGLVGSCADLAMVNSSWTQSHIEKLWGIPDRIKRVYPPCDTSGLQVLP----LERSTEYPAIISVAQFR 279 (380)
Q Consensus 204 ~~~~~~~~~~l~~~~~~~ad~ii~~S~~~~~~i~~~~~~~~k~~vi~~gvd~~~~~~~~----~~~~~~~~~il~VGRl~ 279 (380)
..++..+.+|.++++|+..++. ++ ++++.+++||+|.+.+.+.+ .....+++.++++|+..
T Consensus 127 ----------~~~~~~~~~~~vi~~s~~~~~~----~~-~~~~~~i~n~v~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~ 191 (350)
T cd03785 127 ----------ANRLLARFADRVALSFPETAKY----FP-KDKAVVTGNPVREEILALDRERARLGLRPGKPTLLVFGGSQ 191 (350)
T ss_pred ----------HHHHHHHhhCEEEEcchhhhhc----CC-CCcEEEECCCCchHHhhhhhhHHhcCCCCCCeEEEEECCcH
Confidence 1123345689999999887765 22 46889999999876554321 11123456888999888
Q ss_pred CccChHH-HHHHHHHHHHHccCCCCCCe-EEEEcCCCCCCCHHHHHHHHHHHHhcCCCCcEEEccCCCHHHHHHHHhhcc
Q 016925 280 PEKAHPL-QLEAFSVALRKLDADLPRPR-LQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRSVLTIFMHLF 357 (380)
Q Consensus 280 p~K~~d~-li~A~~~l~~~~~~~~~~~~-LvIvG~g~~~~~~~~~~~L~~la~~lgl~~~V~f~G~v~~~el~~ly~~a~ 357 (380)
+.|+.+. +++|++.+.+ +++. ++++|++ ..++++++++++ .++|.|.|++ +++.++|+.||
T Consensus 192 ~~~~~~~~l~~a~~~l~~------~~~~~~~i~G~g-------~~~~l~~~~~~~--~~~v~~~g~~--~~~~~~l~~ad 254 (350)
T cd03785 192 GARAINEAVPEALAELLR------KRLQVIHQTGKG-------DLEEVKKAYEEL--GVNYEVFPFI--DDMAAAYAAAD 254 (350)
T ss_pred hHHHHHHHHHHHHHHhhc------cCeEEEEEcCCc-------cHHHHHHHHhcc--CCCeEEeehh--hhHHHHHHhcC
Confidence 8888765 4588887742 4566 4577765 136788888776 5789999997 58999999999
Q ss_pred EEEeec
Q 016925 358 VFTMKW 363 (380)
Q Consensus 358 vf~~~~ 363 (380)
+++.++
T Consensus 255 ~~v~~s 260 (350)
T cd03785 255 LVISRA 260 (350)
T ss_pred EEEECC
Confidence 999755
No 67
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=99.56 E-value=4.1e-13 Score=129.72 Aligned_cols=251 Identities=12% Similarity=0.103 Sum_probs=142.4
Q ss_pred cEEEEECCCCCCCCChhHHHHHHHHHHHHhCCCceEEEEcCCCCCChhhHHHHHHhhcCccccCCCeEEEeccccccccC
Q 016925 35 TSVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYTGDHDAFPDSLLARAVDRFGVELLHPPKVVHLYRRKWIEES 114 (380)
Q Consensus 35 ~~I~~~~p~~~~~GG~ervl~~la~~L~~~g~~~~v~v~t~~~~~~~~~~~~~~~~~~g~~l~~~v~~v~l~~~~~~~~~ 114 (380)
|||.|..-.. ||....+.+++++|+++| |+|+++|..+... ....+.+|+ ++..++........
T Consensus 1 ~~i~~~~g~~---~g~~~~~~~La~~L~~~g--~eV~vv~~~~~~~-----~~~~~~~g~------~~~~i~~~~~~~~~ 64 (348)
T TIGR01133 1 KKVVLAAGGT---GGHIFPALAVAEELIKRG--VEVLWLGTKRGLE-----KRLVPKAGI------EFYFIPVGGLRRKG 64 (348)
T ss_pred CeEEEEeCcc---HHHHhHHHHHHHHHHhCC--CEEEEEeCCCcch-----hcccccCCC------ceEEEeccCcCCCC
Confidence 4677665533 455556779999999999 7888887543211 011011233 33333221100000
Q ss_pred CCCccceehhhHhHHHHHHHHHHhcCCcEEEeCCCchhhHH--HHhHhCCcEEEEEeCCcchhhHHHhhhccccccCCCc
Q 016925 115 TYPRFTMIGQSFGSVYLSWEALCKFTPLYYFDTSGYAFTYP--LARIFGCRVICYTHYPTISLDMISRVREGSSMYNNNA 192 (380)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~l~~~~pDi~~~~~~~~~~~~--l~~~~~~p~v~~~H~p~~~~~~~~~~~~~~~~~~~~~ 192 (380)
....+......+..+....+.+++.+||+++++........ .++..++|.+.+.+. .
T Consensus 65 ~~~~l~~~~~~~~~~~~l~~~i~~~~pDvVi~~~~~~~~~~~~~~~~~~~p~v~~~~~-~-------------------- 123 (348)
T TIGR01133 65 SFRLIKTPLKLLKAVFQARRILKKFKPDAVIGFGGYVSGPAGLAAKLLGIPLFHHEQN-A-------------------- 123 (348)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEcCCcccHHHHHHHHHcCCCEEEECCC-C--------------------
Confidence 00000000111112223345578899998876654432222 234567887633220 0
Q ss_pred cccccchhhhhHHHHHHHHHHHHHHHhcCCCEEEEcCHHHHHHHHHHhCCCCceEEecCCCCCCCCCCCC----CCCCCC
Q 016925 193 SIAQSNWLSQCKIVYYTFFSWMYGLVGSCADLAMVNSSWTQSHIEKLWGIPDRIKRVYPPCDTSGLQVLP----LERSTE 268 (380)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ad~ii~~S~~~~~~i~~~~~~~~k~~vi~~gvd~~~~~~~~----~~~~~~ 268 (380)
. ..+ .++++.+.+|.++++|+.+++.+ +..+++||++...+.+.. ....++
T Consensus 124 ---~---~~~-----------~~~~~~~~~d~ii~~~~~~~~~~--------~~~~i~n~v~~~~~~~~~~~~~~~~~~~ 178 (348)
T TIGR01133 124 ---V---PGL-----------TNKLLSRFAKKVLISFPGAKDHF--------EAVLVGNPVRQEIRSLPVPRERFGLREG 178 (348)
T ss_pred ---C---ccH-----------HHHHHHHHhCeeEECchhHhhcC--------CceEEcCCcCHHHhcccchhhhcCCCCC
Confidence 0 000 12334467899999998776653 236899999854333211 011124
Q ss_pred CCEEEEEecCCCccChHH-HHHHHHHHHHHccCCCCCCeEEEEcCCCCCCCHHHHHHHHHHHHhcCCCCcEEEccCCCHH
Q 016925 269 YPAIISVAQFRPEKAHPL-QLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYR 347 (380)
Q Consensus 269 ~~~il~VGRl~p~K~~d~-li~A~~~l~~~~~~~~~~~~LvIvG~g~~~~~~~~~~~L~~la~~lgl~~~V~f~G~v~~~ 347 (380)
.++++++|+....|++.. +++|++.+.+ +++++++++++. + .++|++.++++++.+.|.|. .+
T Consensus 179 ~~~i~~~gg~~~~~~~~~~l~~a~~~l~~------~~~~~~~~~g~~-----~-~~~l~~~~~~~~l~~~v~~~---~~- 242 (348)
T TIGR01133 179 KPTILVLGGSQGAKILNELVPKALAKLAE------KGIQIVHQTGKN-----D-LEKVKNVYQELGIEAIVTFI---DE- 242 (348)
T ss_pred CeEEEEECCchhHHHHHHHHHHHHHHHhh------cCcEEEEECCcc-----h-HHHHHHHHhhCCceEEecCc---cc-
Confidence 578999999999999765 5688888753 356664444321 1 26889999999987777776 22
Q ss_pred HHHHHHhhccEEEeec
Q 016925 348 SVLTIFMHLFVFTMKW 363 (380)
Q Consensus 348 el~~ly~~a~vf~~~~ 363 (380)
++.++|+.||+++.+.
T Consensus 243 ~~~~~l~~ad~~v~~~ 258 (348)
T TIGR01133 243 NMAAAYAAADLVISRA 258 (348)
T ss_pred CHHHHHHhCCEEEECC
Confidence 7899999999999753
No 68
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=99.55 E-value=4.7e-12 Score=126.12 Aligned_cols=250 Identities=14% Similarity=0.070 Sum_probs=149.0
Q ss_pred CChhHHHHHHHHHHHHhCCCceEEEEcCCCCCChhhHHHHHHhhcCccccCCCeEEEeccccccccCCCCccceehhhHh
Q 016925 48 GGGERVLWCAVKAIQEESPDLDCIVYTGDHDAFPDSLLARAVDRFGVELLHPPKVVHLYRRKWIEESTYPRFTMIGQSFG 127 (380)
Q Consensus 48 GG~ervl~~la~~L~~~g~~~~v~v~t~~~~~~~~~~~~~~~~~~g~~l~~~v~~v~l~~~~~~~~~~~~~~~~~~~~~~ 127 (380)
.|-.+.+..++++|.++++++++.+.+... +..+..+. .++ +.+.+.+++. ..+
T Consensus 60 ~Ge~~~~~~l~~~l~~~~~~~~i~~t~~t~--~~~~~~~~---~~~----~~~~~~~~P~-------d~~---------- 113 (425)
T PRK05749 60 VGETRAAIPLIRALRKRYPDLPILVTTMTP--TGSERAQA---LFG----DDVEHRYLPY-------DLP---------- 113 (425)
T ss_pred HHHHHHHHHHHHHHHHhCCCCcEEEeCCCc--cHHHHHHH---hcC----CCceEEEecC-------CcH----------
Confidence 467788999999999999888865554321 11112211 111 1223333321 011
Q ss_pred HHHHHHHHHHhcCCcEEEeCCCc--hhhHHHHhHhCCcEEEEEeCCcchhhHHHhhhccccccCCCccccccchhhhhHH
Q 016925 128 SVYLSWEALCKFTPLYYFDTSGY--AFTYPLARIFGCRVICYTHYPTISLDMISRVREGSSMYNNNASIAQSNWLSQCKI 205 (380)
Q Consensus 128 ~~~~~~~~l~~~~pDi~~~~~~~--~~~~~l~~~~~~p~v~~~H~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (380)
....+.+++.+||+++...+. ++.+..++..++|.+.+.|... . . . ..
T Consensus 114 --~~~~~~l~~~~Pd~v~~~~~~~~~~~l~~~~~~~ip~vl~~~~~~-~-~---------------------s-~~---- 163 (425)
T PRK05749 114 --GAVRRFLRFWRPKLVIIMETELWPNLIAELKRRGIPLVLANARLS-E-R---------------------S-FK---- 163 (425)
T ss_pred --HHHHHHHHhhCCCEEEEEecchhHHHHHHHHHCCCCEEEEeccCC-h-h---------------------h-HH----
Confidence 012345788899976533222 2111123456789887544211 0 0 0 00
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEcCHHHHHHHHHHhCCCCceEEecCCCCCCCCCCCCC-C-------CC-CCCCEEEEEe
Q 016925 206 VYYTFFSWMYGLVGSCADLAMVNSSWTQSHIEKLWGIPDRIKRVYPPCDTSGLQVLPL-E-------RS-TEYPAIISVA 276 (380)
Q Consensus 206 ~~~~~~~~l~~~~~~~ad~ii~~S~~~~~~i~~~~~~~~k~~vi~~gvd~~~~~~~~~-~-------~~-~~~~~il~VG 276 (380)
.++.+.++.+.+.+.+|.|+++|+.+++.+.+....++ +.+++|. +.+.+..... . .. .++++++++|
T Consensus 164 -~~~~~~~~~r~~~~~~d~ii~~S~~~~~~l~~~g~~~~-i~vi~n~-~~d~~~~~~~~~~~~~~r~~~~~~~~vil~~~ 240 (425)
T PRK05749 164 -RYQKFKRFYRLLFKNIDLVLAQSEEDAERFLALGAKNE-VTVTGNL-KFDIEVPPELAARAATLRRQLAPNRPVWIAAS 240 (425)
T ss_pred -HHHHHHHHHHHHHHhCCEEEECCHHHHHHHHHcCCCCC-cEecccc-cccCCCChhhHHHHHHHHHHhcCCCcEEEEeC
Confidence 01123345566777899999999999999988532233 6677663 3222211100 0 00 2457888888
Q ss_pred cCCCccChHHHHHHHHHHHHHccCCCCCCeEEEEcCCCCCCCHHHHHHHHHHHHhcCCCCcEEEccCC------------
Q 016925 277 QFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNL------------ 344 (380)
Q Consensus 277 Rl~p~K~~d~li~A~~~l~~~~~~~~~~~~LvIvG~g~~~~~~~~~~~L~~la~~lgl~~~V~f~G~v------------ 344 (380)
+. .|+.+.+++|++.+.++. |+++|+|+|+|+. ..++++++++++|+.. +.|.|..
T Consensus 241 ~~--~~~~~~ll~A~~~l~~~~----~~~~liivG~g~~-----r~~~l~~~~~~~gl~~-~~~~~~~~~~~~~~v~l~~ 308 (425)
T PRK05749 241 TH--EGEEELVLDAHRALLKQF----PNLLLILVPRHPE-----RFKEVEELLKKAGLSY-VRRSQGEPPSADTDVLLGD 308 (425)
T ss_pred CC--chHHHHHHHHHHHHHHhC----CCcEEEEcCCChh-----hHHHHHHHHHhCCCcE-EEccCCCCCCCCCcEEEEe
Confidence 64 688999999999987654 8999999998742 2368999999999863 4444321
Q ss_pred CHHHHHHHHhhccEEEe--echhhHH
Q 016925 345 LYRSVLTIFMHLFVFTM--KWQLVYD 368 (380)
Q Consensus 345 ~~~el~~ly~~a~vf~~--~~~~~~~ 368 (380)
+.+|+..+|+.||++++ +..|.||
T Consensus 309 ~~~el~~~y~~aDi~~v~~S~~e~~g 334 (425)
T PRK05749 309 TMGELGLLYAIADIAFVGGSLVKRGG 334 (425)
T ss_pred cHHHHHHHHHhCCEEEECCCcCCCCC
Confidence 24699999999999554 4446665
No 69
>PF13439 Glyco_transf_4: Glycosyltransferase Family 4; PDB: 2JJM_E 3MBO_C 2GEJ_A 2GEK_A.
Probab=99.55 E-value=8.4e-14 Score=120.15 Aligned_cols=176 Identities=18% Similarity=0.139 Sum_probs=90.0
Q ss_pred EEEECCCCCCCCChhHHHHHHHHHHHHhCCCceEEEEcCCCCCChhhHHHHHHhhcCccccCCCeEEEeccccccccCCC
Q 016925 37 VAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYTGDHDAFPDSLLARAVDRFGVELLHPPKVVHLYRRKWIEESTY 116 (380)
Q Consensus 37 I~~~~p~~~~~GG~ervl~~la~~L~~~g~~~~v~v~t~~~~~~~~~~~~~~~~~~g~~l~~~v~~v~l~~~~~~~~~~~ 116 (380)
|++.+.+....||+|+++.+++++|+++| |+|++++...+.... .. ........ ..
T Consensus 1 ili~~~~~~~~GG~e~~~~~l~~~l~~~G--~~v~v~~~~~~~~~~---------------~~-~~~~~~~~------~~ 56 (177)
T PF13439_consen 1 ILITNIFLPNIGGAERVVLNLARALAKRG--HEVTVVSPGVKDPIE---------------EE-LVKIFVKI------PY 56 (177)
T ss_dssp -EEECC-TTSSSHHHHHHHHHHHHHHHTT---EEEEEESS-TTS-S---------------ST-EEEE---T------T-
T ss_pred CEEEEecCCCCChHHHHHHHHHHHHHHCC--CEEEEEEcCCCccch---------------hh-ccceeeee------ec
Confidence 56777777778999999999999999999 778888755421110 00 00000000 00
Q ss_pred CccceehhhHhHHHHHHHHHHhcCCcEEEeCCCchhhHHHHhHhCCcEEEEEeCCcchhhHHHhhhccccccCCCccccc
Q 016925 117 PRFTMIGQSFGSVYLSWEALCKFTPLYYFDTSGYAFTYPLARIFGCRVICYTHYPTISLDMISRVREGSSMYNNNASIAQ 196 (380)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~l~~~~pDi~~~~~~~~~~~~l~~~~~~p~v~~~H~p~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (380)
.........+.......+.+++.+||+++.+.............++|.++++|......... . . ..
T Consensus 57 ~~~~~~~~~~~~~~~~~~~i~~~~~DiVh~~~~~~~~~~~~~~~~~~~v~~~H~~~~~~~~~---------~-~----~~ 122 (177)
T PF13439_consen 57 PIRKRFLRSFFFMRRLRRLIKKEKPDIVHIHGPPAFWIALLACRKVPIVYTIHGPYFERRFL---------K-S----KL 122 (177)
T ss_dssp SSTSS--HHHHHHHHHHHHHHHHT-SEEECCTTHCCCHHHHHHHCSCEEEEE-HHH--HHTT---------T-T----SC
T ss_pred ccccccchhHHHHHHHHHHHHHcCCCeEEecccchhHHHHHhccCCCEEEEeCCCccccccc---------c-c----cc
Confidence 00001111111222345567888999876444332222222222899999999644100000 0 0 00
Q ss_pred cchhhhhHHHHHHHHHHHHHHHhcCCCEEEEcCHHHHHHHHHHhCC-CCceEEecCCCCCCCCC
Q 016925 197 SNWLSQCKIVYYTFFSWMYGLVGSCADLAMVNSSWTQSHIEKLWGI-PDRIKRVYPPCDTSGLQ 259 (380)
Q Consensus 197 ~~~~~~~~~~~~~~~~~l~~~~~~~ad~ii~~S~~~~~~i~~~~~~-~~k~~vi~~gvd~~~~~ 259 (380)
..... +....++...+.+|.++|+|+++++++.+ ++. +.++.|||||+|++.|.
T Consensus 123 ----~~~~~----~~~~~~~~~~~~~~~ii~vS~~~~~~l~~-~~~~~~ki~vI~ngid~~~F~ 177 (177)
T PF13439_consen 123 ----SPYSY----LNFRIERKLYKKADRIIAVSESTKDELIK-FGIPPEKIHVIYNGIDTDRFR 177 (177)
T ss_dssp ----CCHHH----HHHCTTHHHHCCSSEEEESSHHHHHHHHH-HT--SS-EEE----B-CCCH-
T ss_pred ----chhhh----hhhhhhhhHHhcCCEEEEECHHHHHHHHH-hCCcccCCEEEECCccHHHcC
Confidence 00111 11122334468999999999999999999 776 57999999999988763
No 70
>PHA01633 putative glycosyl transferase group 1
Probab=99.54 E-value=1.3e-13 Score=131.88 Aligned_cols=135 Identities=11% Similarity=0.087 Sum_probs=101.1
Q ss_pred CCCEEEEcCHHHHHHHHHHhCCCCceEEecCCCCCCCCCCCCC---------C-CCCCCCEEEEEecCCCccChHHHHHH
Q 016925 221 CADLAMVNSSWTQSHIEKLWGIPDRIKRVYPPCDTSGLQVLPL---------E-RSTEYPAIISVAQFRPEKAHPLQLEA 290 (380)
Q Consensus 221 ~ad~ii~~S~~~~~~i~~~~~~~~k~~vi~~gvd~~~~~~~~~---------~-~~~~~~~il~VGRl~p~K~~d~li~A 290 (380)
+.+.+|++|+++++.+++. |.+..+ +|++|+|++.|.+... . ..++...+++|||++++||++.+|+|
T Consensus 92 ~~~~vIavS~~t~~~L~~~-G~~~~i-~I~~GVD~~~f~p~~~~~~~~r~~~~~~~~~~~~i~~vGRl~~~KG~~~LI~A 169 (335)
T PHA01633 92 QDVKFIPNSKFSAENLQEV-GLQVDL-PVFHGINFKIVENAEKLVPQLKQKLDKDFPDTIKFGIVSGLTKRKNMDLMLQV 169 (335)
T ss_pred cCCEEEeCCHHHHHHHHHh-CCCCce-eeeCCCChhhcCccchhhHHHHHHhCcCCCCCeEEEEEeCCccccCHHHHHHH
Confidence 4679999999999999885 433333 5789999887765320 0 01245689999999999999999999
Q ss_pred HHHHHHHccCCCCCCeEEEEcCCCCCCCHHHHHHHHHHHHhcCCCCcEEEc---cCCCHHHHHHHHhhccEEEe-echhh
Q 016925 291 FSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFY---KNLLYRSVLTIFMHLFVFTM-KWQLV 366 (380)
Q Consensus 291 ~~~l~~~~~~~~~~~~LvIvG~g~~~~~~~~~~~L~~la~~lgl~~~V~f~---G~v~~~el~~ly~~a~vf~~-~~~~~ 366 (380)
++++.++.++...+++|+++|+ +. .++++++++|.|+ |+++++++.++|+.||+|++ +..|.
T Consensus 170 ~~~L~~~~p~~~~~i~l~ivG~----------~~----~~~l~l~~~V~f~g~~G~~~~~dl~~~y~~aDifV~PS~~Eg 235 (335)
T PHA01633 170 FNELNTKYPDIAKKIHFFVISH----------KQ----FTQLEVPANVHFVAEFGHNSREYIFAFYGAMDFTIVPSGTEG 235 (335)
T ss_pred HHHHHHhCCCccccEEEEEEcH----------HH----HHHcCCCCcEEEEecCCCCCHHHHHHHHHhCCEEEECCcccc
Confidence 9999876411011357888873 11 2457889999998 56788999999999999997 66799
Q ss_pred HHHHH
Q 016925 367 YDEFL 371 (380)
Q Consensus 367 ~~~~~ 371 (380)
||.=+
T Consensus 236 fGlvl 240 (335)
T PHA01633 236 FGMPV 240 (335)
T ss_pred CCHHH
Confidence 98643
No 71
>PHA01630 putative group 1 glycosyl transferase
Probab=99.48 E-value=4.7e-13 Score=128.83 Aligned_cols=131 Identities=11% Similarity=0.066 Sum_probs=97.6
Q ss_pred hcCCCEEEEcCHHHHHHHHHHhCC-CCceEEecCCCCCCCCCCCCCCCCCCCCEEEEEecCCCccChHHHHHHHHHHHHH
Q 016925 219 GSCADLAMVNSSWTQSHIEKLWGI-PDRIKRVYPPCDTSGLQVLPLERSTEYPAIISVAQFRPEKAHPLQLEAFSVALRK 297 (380)
Q Consensus 219 ~~~ad~ii~~S~~~~~~i~~~~~~-~~k~~vi~~gvd~~~~~~~~~~~~~~~~~il~VGRl~p~K~~d~li~A~~~l~~~ 297 (380)
.+.+|.++|+|+.+++.+.+.... ++++.+|+||+|.+.|.+...+. .....+.++||+.++||++.+|+|++++.++
T Consensus 92 ~~~ad~ii~~S~~~~~~l~~~g~~~~~~i~vIpNGVd~~~f~~~~~~~-~~~~vl~~~g~~~~~Kg~d~Li~A~~~l~~~ 170 (331)
T PHA01630 92 NQPVDEIVVPSQWSKNAFYTSGLKIPQPIYVIPHNLNPRMFEYKPKEK-PHPCVLAILPHSWDRKGGDIVVKIFHELQNE 170 (331)
T ss_pred hccCCEEEECCHHHHHHHHHcCCCCCCCEEEECCCCCHHHcCCCcccc-CCCEEEEEeccccccCCHHHHHHHHHHHHhh
Confidence 578999999999999998875422 45889999999987776432211 1233555777899999999999999999765
Q ss_pred ccCCCCCCeEEEEcCCCCCCCHHHHHHHHHHHHhcCCCCcEEEccCCCHHHHHHHHhhccEEEe-echhhHHH
Q 016925 298 LDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRSVLTIFMHLFVFTM-KWQLVYDE 369 (380)
Q Consensus 298 ~~~~~~~~~LvIvG~g~~~~~~~~~~~L~~la~~lgl~~~V~f~G~v~~~el~~ly~~a~vf~~-~~~~~~~~ 369 (380)
. ++++++|+|++... .++ .++.. +.|.++++++.++|+.||+|++ +..|.||-
T Consensus 171 ~----~~~~llivG~~~~~------~~l------~~~~~---~~~~v~~~~l~~~y~~aDv~v~pS~~E~fgl 224 (331)
T PHA01630 171 G----YDFYFLIKSSNMLD------PRL------FGLNG---VKTPLPDDDIYSLFAGCDILFYPVRGGAFEI 224 (331)
T ss_pred C----CCEEEEEEeCcccc------hhh------ccccc---eeccCCHHHHHHHHHhCCEEEECCccccCCh
Confidence 4 89999999965310 111 12322 3566899999999999999997 45687763
No 72
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=99.47 E-value=3.1e-12 Score=125.50 Aligned_cols=126 Identities=11% Similarity=0.082 Sum_probs=90.0
Q ss_pred hcCCCEEEEcCHHHHHHHHHHhCCCCceEEecCCCCCCCCCC-CC-------CCCCCCCC-EEEEEecCCCccChHHHHH
Q 016925 219 GSCADLAMVNSSWTQSHIEKLWGIPDRIKRVYPPCDTSGLQV-LP-------LERSTEYP-AIISVAQFRPEKAHPLQLE 289 (380)
Q Consensus 219 ~~~ad~ii~~S~~~~~~i~~~~~~~~k~~vi~~gvd~~~~~~-~~-------~~~~~~~~-~il~VGRl~p~K~~d~li~ 289 (380)
.+.+|.+++.|+.+++.+.+....++++.++.+|++.. |.. .+ ....++++ .+++.|++...|+++.+++
T Consensus 145 ~~~ad~i~~~s~~~~~~l~~~gi~~~ki~v~G~p~~~~-f~~~~~~~~~~~~~~l~~~~~~il~~~G~~~~~k~~~~li~ 223 (380)
T PRK13609 145 HREVDRYFVATDHVKKVLVDIGVPPEQVVETGIPIRSS-FELKINPDIIYNKYQLCPNKKILLIMAGAHGVLGNVKELCQ 223 (380)
T ss_pred cCCCCEEEECCHHHHHHHHHcCCChhHEEEECcccChH-HcCcCCHHHHHHHcCCCCCCcEEEEEcCCCCCCcCHHHHHH
Confidence 36899999999999999887432246777776666422 221 10 00112334 4566789999999999999
Q ss_pred HHHHHHHHccCCCCCCeEEEEcCCCCCCCHHHHHHHHHHHHhcCCCCcEEEccCCCHHHHHHHHhhccEEEe
Q 016925 290 AFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRSVLTIFMHLFVFTM 361 (380)
Q Consensus 290 A~~~l~~~~~~~~~~~~LvIvG~g~~~~~~~~~~~L~~la~~lgl~~~V~f~G~v~~~el~~ly~~a~vf~~ 361 (380)
++... ++++++++|++ +.+..+++++++++++ ++|+|+|+++ ++.++|+.||+++.
T Consensus 224 ~l~~~--------~~~~~viv~G~----~~~~~~~l~~~~~~~~--~~v~~~g~~~--~~~~l~~~aD~~v~ 279 (380)
T PRK13609 224 SLMSV--------PDLQVVVVCGK----NEALKQSLEDLQETNP--DALKVFGYVE--NIDELFRVTSCMIT 279 (380)
T ss_pred HHhhC--------CCcEEEEEeCC----CHHHHHHHHHHHhcCC--CcEEEEechh--hHHHHHHhccEEEe
Confidence 87532 78999887642 2345678888887766 7899999985 68999999999986
No 73
>cd03788 GT1_TPS Trehalose-6-Phosphate Synthase (TPS) is a glycosyltransferase that catalyses the synthesis of alpha,alpha-1,1-trehalose-6-phosphate from glucose-6-phosphate using a UDP-glucose donor. It is a key enzyme in the trehalose synthesis pathway. Trehalose is a nonreducing disaccharide present in a wide variety of organisms and may serve as a source of energy and carbon. It is characterized most notably in insect, plant, and microbial cells. Its production is often associated with a variety of stress conditions, including desiccation, dehydration, heat, cold, and oxidation. This family represents the catalytic domain of the TPS. Some members of this domain family coexist with a C-terminal trehalose phosphatase domain.
Probab=99.46 E-value=2e-13 Score=137.23 Aligned_cols=124 Identities=16% Similarity=0.139 Sum_probs=90.5
Q ss_pred CceEEecCCCCCCCCCCCCC------------CCCCCCCEEEEEecCCCccChHHHHHHHHHHHHHccCCCCC----CeE
Q 016925 244 DRIKRVYPPCDTSGLQVLPL------------ERSTEYPAIISVAQFRPEKAHPLQLEAFSVALRKLDADLPR----PRL 307 (380)
Q Consensus 244 ~k~~vi~~gvd~~~~~~~~~------------~~~~~~~~il~VGRl~p~K~~d~li~A~~~l~~~~~~~~~~----~~L 307 (380)
.++.+++||+|++.|.+... ....++++|++|||+++.||++.+|+|++.+.+++ |+ ++|
T Consensus 227 ~~i~vip~GID~~~f~~~~~~~~~~~~~~~~~~~~~~~~~il~vgRl~~~Kgi~~ll~A~~~ll~~~----p~~~~~v~L 302 (460)
T cd03788 227 VRVGAFPIGIDPDAFRKLAASPEVQERAAELRERLGGRKLIVGVDRLDYSKGIPERLLAFERLLERY----PEWRGKVVL 302 (460)
T ss_pred EEEEEEeCeEcHHHHHHHhcCchhHHHHHHHHHhcCCCEEEEEecCccccCCHHHHHHHHHHHHHhC----hhhcCCEEE
Confidence 46889999999877754211 01134679999999999999999999999998765 65 578
Q ss_pred EEEcCCCC---CCCHHHHHHHHHHHHhcCCC------CcEE-EccCCCHHHHHHHHhhccEEEe-echhhHHHHH
Q 016925 308 QFVGSCRN---KSDEERLQSLKDKSIELKVD------GNVE-FYKNLLYRSVLTIFMHLFVFTM-KWQLVYDEFL 371 (380)
Q Consensus 308 vIvG~g~~---~~~~~~~~~L~~la~~lgl~------~~V~-f~G~v~~~el~~ly~~a~vf~~-~~~~~~~~~~ 371 (380)
+++|.+.. ....++.+++++++++++.. ..|+ |.|.++++++..+|+.||+|++ +.+|.||-=.
T Consensus 303 v~vg~~~~g~~~~~~~l~~~l~~~v~~in~~~g~~~~~~v~~~~g~v~~~el~~~y~~aDv~v~pS~~Eg~~lv~ 377 (460)
T cd03788 303 VQIAVPSRTDVPEYQELRREVEELVGRINGKFGTLDWTPVRYLYRSLPREELAALYRAADVALVTPLRDGMNLVA 377 (460)
T ss_pred EEEccCCCcCcHHHHHHHHHHHHHHHHHHhccCCCCceeEEEEeCCCCHHHHHHHHHhccEEEeCccccccCccc
Confidence 88876421 12234556666666665432 2354 5678999999999999999997 7888887543
No 74
>KOG0853 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=99.41 E-value=1.2e-11 Score=121.83 Aligned_cols=299 Identities=21% Similarity=0.254 Sum_probs=187.7
Q ss_pred CcEEEEECCCCCCCCChhHHHHHHHHHHHH---------hCCCceEEEEcCCCCCChhh----HHHHHHhhcCccccCCC
Q 016925 34 TTSVAFFHPNTNDGGGGERVLWCAVKAIQE---------ESPDLDCIVYTGDHDAFPDS----LLARAVDRFGVELLHPP 100 (380)
Q Consensus 34 ~~~I~~~~p~~~~~GG~ervl~~la~~L~~---------~g~~~~v~v~t~~~~~~~~~----~~~~~~~~~g~~l~~~v 100 (380)
.+++.|.||.+. +||.|+-..+.+-+++. .| ++|+++|.+.+.-..+ +.++..+ ..+ ++
T Consensus 34 ~~~~~~~~~~~~-~gg~er~~v~~~~~l~s~~~~lg~~d~G--~qV~~l~~h~~al~~~~~~~~~~~~l~---~~~--~i 105 (495)
T KOG0853|consen 34 FEHVTFIHPDLG-IGGAERLVVDAAVHLLSGQDVLGLPDTG--GQVVYLTSHEDALEMPLLLRCFAETLD---GTP--PI 105 (495)
T ss_pred chhheeeccccc-cCchHHHhHHHHHHHHhcccccCCCCCC--ceEEEEehhhhhhcchHHHHHHHHHhc---CCC--ce
Confidence 456899999995 47999999999999998 88 7888888765321111 2222221 111 12
Q ss_pred eEEE--ecccc--ccc---cCCCCccceehhhHhHHHHHHHHHHhcCCcEEEeCCCchhhHHHHh-Hh----CCcEEEEE
Q 016925 101 KVVH--LYRRK--WIE---ESTYPRFTMIGQSFGSVYLSWEALCKFTPLYYFDTSGYAFTYPLAR-IF----GCRVICYT 168 (380)
Q Consensus 101 ~~v~--l~~~~--~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~~pDi~~~~~~~~~~~~l~~-~~----~~p~v~~~ 168 (380)
.++. ++... +.+ .+.+. ..+.-.+. .+..| . .+.|.++.... ..+.|+.. +. .+.+++||
T Consensus 106 ~vv~~~lP~~~~~~~~~~~~~~~~--~il~~~~~-~~~k~--~--~~~d~~i~d~~-~~~~~l~~~~~~p~~~~~i~~~~ 177 (495)
T KOG0853|consen 106 LVVGDWLPRAMGQFLEQVAGCAYL--RILRIPFG-ILFKW--A--EKVDPIIEDFV-SACVPLLKQLSGPDVIIKIYFYC 177 (495)
T ss_pred EEEEeecCcccchhhhhhhcccee--EEEEeccc-hhhhh--h--hhhceeecchH-HHHHHHHHHhcCCcccceeEEec
Confidence 2221 11100 000 00000 00000000 00111 1 34575542222 23445543 34 36678899
Q ss_pred eCCcchhhHHHhhhccccccCCCccccccchhhhhHHHHHHHHHHHHHHHhcCCCEEEEcCHHHHHHHHHHhCC--CCce
Q 016925 169 HYPTISLDMISRVREGSSMYNNNASIAQSNWLSQCKIVYYTFFSWMYGLVGSCADLAMVNSSWTQSHIEKLWGI--PDRI 246 (380)
Q Consensus 169 H~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ad~ii~~S~~~~~~i~~~~~~--~~k~ 246 (380)
|+|... +.++ .+..+.+|...+.+.+......+|.+++||.+++..+...+.. ..++
T Consensus 178 h~~~~l------la~r---------------~g~~~~l~~~~l~~~e~e~~~~~~~~~~ns~~~~~~f~~~~~~L~~~d~ 236 (495)
T KOG0853|consen 178 HFPDSL------LAKR---------------LGVLKVLYRHALDKIEEETTGLAWKILVNSYFTKRQFKATFVSLSNSDI 236 (495)
T ss_pred cchHHH------hccc---------------cCccceeehhhhhhhhhhhhhccceEecchhhhhhhhhhhhhhcCCCCc
Confidence 988742 1111 1122344555555666666778999999999999998887654 2358
Q ss_pred EEecCCCCCCCCCC------C----CCC----CCCCCCEEEEEecCCCccChHHHHHHHHHHHHHcc-CCCCCCeEEEEc
Q 016925 247 KRVYPPCDTSGLQV------L----PLE----RSTEYPAIISVAQFRPEKAHPLQLEAFSVALRKLD-ADLPRPRLQFVG 311 (380)
Q Consensus 247 ~vi~~gvd~~~~~~------~----~~~----~~~~~~~il~VGRl~p~K~~d~li~A~~~l~~~~~-~~~~~~~LvIvG 311 (380)
.+.|+++|.+.+.+ . +.. ....+.++..+.|+.|.||++.+++||.++.+..+ +..++.++.++|
T Consensus 237 ~~~y~ei~~s~~~~~~~~~~~~~~~~~r~~~~v~~~d~~~~siN~~~pgkd~~l~l~a~~~~~~~i~~~~~~~~hl~~~g 316 (495)
T KOG0853|consen 237 TSTYPEIDGSWFTYGQYESHLELRLPVRLYRGVSGIDRFFPSINRFEPGKDQDLALPAFTLLHDSIPEPSISSEHLVVAG 316 (495)
T ss_pred ceeeccccchhccccccccchhcccccceeeeecccceEeeeeeecCCCCCceeehhhHHhhhcccCCCCCCceEEEEec
Confidence 89999999765542 1 100 01225678999999999999999999999987653 233677888888
Q ss_pred CC----CCCCCHHHHHHHHHHHHhcCC-CCcEEEccCCCHHHHHHHHhhccE-EEeechhhHHH
Q 016925 312 SC----RNKSDEERLQSLKDKSIELKV-DGNVEFYKNLLYRSVLTIFMHLFV-FTMKWQLVYDE 369 (380)
Q Consensus 312 ~g----~~~~~~~~~~~L~~la~~lgl-~~~V~f~G~v~~~el~~ly~~a~v-f~~~~~~~~~~ 369 (380)
+. ...++.+|.++|+++++++++ .+.|.|+...++.+.-.+++.+.. |..|-.|+||.
T Consensus 317 ~~G~d~~~sen~~~~~el~~lie~~~l~g~~v~~~~s~~~~~~yrl~adt~~v~~qPa~E~FGi 380 (495)
T KOG0853|consen 317 SRGYDERDSENVEYLKELLSLIEEYDLLGQFVWFLPSTTRVAKYRLAADTKGVLYQPANEHFGI 380 (495)
T ss_pred CCCccccchhhHHHHHHHHHHHHHhCccCceEEEecCCchHHHHHHHHhcceEEecCCCCCccc
Confidence 32 234688899999999999999 688999999888777666777766 66677899995
No 75
>TIGR02400 trehalose_OtsA alpha,alpha-trehalose-phosphate synthase [UDP-forming]. This enzyme catalyzes the key, penultimate step in biosynthesis of trehalose, a compatible solute made as an osmoprotectant in some species in all three domains of life. The gene symbol OtsA stands for osmotically regulated trehalose synthesis A. Trehalose helps protect against both osmotic and thermal stresses, and is made from two glucose subunits. This model excludes glucosylglycerol-phosphate synthase, an enzyme of an analogous osmoprotectant system in many cyanobacterial strains. This model does not identify archaeal examples, as they are more divergent than glucosylglycerol-phosphate synthase. Sequences that score in the gray zone between the trusted and noise cutoffs include a number of yeast multidomain proteins in which the N-terminal domain may be functionally equivalent to this family. The gray zone also includes the OtsA of Cornyebacterium glutamicum (and related species), shown to be responsib
Probab=99.40 E-value=2e-11 Score=122.18 Aligned_cols=154 Identities=15% Similarity=0.043 Sum_probs=103.4
Q ss_pred CCCEEEEcCHHHHHHHHH----Hh------------CCCCceEEecCCCCCCCCCCCCCC------------CCCCCCEE
Q 016925 221 CADLAMVNSSWTQSHIEK----LW------------GIPDRIKRVYPPCDTSGLQVLPLE------------RSTEYPAI 272 (380)
Q Consensus 221 ~ad~ii~~S~~~~~~i~~----~~------------~~~~k~~vi~~gvd~~~~~~~~~~------------~~~~~~~i 272 (380)
.||.|-..+..-++.+.+ .. +...++.++++|+|++.|.+.... .-.+++.|
T Consensus 183 ~~dligF~t~~~~~~Fl~~~~~~l~~~~~~~~~~~~g~~~~v~viP~GID~~~f~~~~~~~~~~~~~~~lr~~~~~~~vI 262 (456)
T TIGR02400 183 AYDLVGFQTYDDARNFLSAVSRELGLETLPNGVESGGRTVRVGAFPIGIDVDRFAEQAKKPSVQKRIAELRESLKGRKLI 262 (456)
T ss_pred cCCEEEECCHHHHHHHHHHHHHHhCCcccCCceEECCcEEEEEEecCcCCHHHHHHHhcChhHHHHHHHHHHHcCCCeEE
Confidence 688888777655544333 12 223467899999999877642110 01246789
Q ss_pred EEEecCCCccChHHHHHHHHHHHHHccCCCCCCeEEEEcCCCCCCCHHHHHHHHHHHHhc-----C---C---CCcEEEc
Q 016925 273 ISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIEL-----K---V---DGNVEFY 341 (380)
Q Consensus 273 l~VGRl~p~K~~d~li~A~~~l~~~~~~~~~~~~LvIvG~g~~~~~~~~~~~L~~la~~l-----g---l---~~~V~f~ 341 (380)
++|||+++.||++.+++||+.+.+++++...++.|+++|.+.. ++.+.+++++++++++ + . ..-+.|.
T Consensus 263 l~VgRLd~~KGi~~ll~A~~~ll~~~p~~~~~v~Lv~v~~p~r-g~~~~~~~l~~~i~~lv~~in~~~~~~~~~pv~~l~ 341 (456)
T TIGR02400 263 IGVDRLDYSKGLPERLLAFERFLEEHPEWRGKVVLVQIAVPSR-GDVPEYQQLRRQVEELVGRINGRFGTLDWTPIRYLN 341 (456)
T ss_pred EEccccccccCHHHHHHHHHHHHHhCccccCceEEEEEecCCc-cCchHHHHHHHHHHHHHHHHHhccCCCCCccEEEEc
Confidence 9999999999999999999999877521111355887764321 2223345566666554 1 1 1234456
Q ss_pred cCCCHHHHHHHHhhccEEEe-echhhHHHHHHHHH
Q 016925 342 KNLLYRSVLTIFMHLFVFTM-KWQLVYDEFLKLYL 375 (380)
Q Consensus 342 G~v~~~el~~ly~~a~vf~~-~~~~~~~~~~~~~~ 375 (380)
|.++++|+..+|+.||+|++ +.+|.||-=.+-|+
T Consensus 342 ~~~~~~el~aly~aaDv~vv~S~~EG~~Lv~lEam 376 (456)
T TIGR02400 342 RSYDREELMALYRAADVGLVTPLRDGMNLVAKEYV 376 (456)
T ss_pred CCCCHHHHHHHHHhCcEEEECccccccCccHHHHH
Confidence 78999999999999999997 78999986666554
No 76
>cd01635 Glycosyltransferase_GTB_type Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. The structures of the formed glycoconjugates are extremely diverse, reflecting a wide range of biological functions. The members of this family share a common GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=99.33 E-value=2.2e-10 Score=102.33 Aligned_cols=92 Identities=18% Similarity=0.175 Sum_probs=71.9
Q ss_pred EEecCCCccChHHHHHHHHHHHHHccCCCCCCeEEEEcCCCCCCCHHHHHHHHHHHHhcCCCCcEEEccCC-CHHHHHHH
Q 016925 274 SVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNL-LYRSVLTI 352 (380)
Q Consensus 274 ~VGRl~p~K~~d~li~A~~~l~~~~~~~~~~~~LvIvG~g~~~~~~~~~~~L~~la~~lgl~~~V~f~G~v-~~~el~~l 352 (380)
++|++.+.||++.+++|+..+.++. ++++++++|.+.. ....++++.+++..++|.+.|++ +.+++..+
T Consensus 109 ~~g~~~~~k~~~~~~~a~~~l~~~~----~~~~~~i~G~~~~------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 178 (229)
T cd01635 109 FVGRLAPEKGLDDLIEAFALLKERG----PDLKLVIAGDGPE------REYLEELLAALLLLDRVIFLGGLDPEELLALL 178 (229)
T ss_pred EEEeecccCCHHHHHHHHHHHHHhC----CCeEEEEEeCCCC------hHHHHHHHHhcCCcccEEEeCCCCcHHHHHHH
Confidence 9999999999999999999997764 8999999998642 13444447788999999999998 55666677
Q ss_pred HhhccEEEeec-hhhHHHHHHHHH
Q 016925 353 FMHLFVFTMKW-QLVYDEFLKLYL 375 (380)
Q Consensus 353 y~~a~vf~~~~-~~~~~~~~~~~~ 375 (380)
++.||+++.+. .|.|+--+-.++
T Consensus 179 ~~~~di~l~~~~~e~~~~~~~Eam 202 (229)
T cd01635 179 LAAADVFVLPSLREGFGLVVLEAM 202 (229)
T ss_pred hhcCCEEEecccccCcChHHHHHH
Confidence 77799988744 477765544443
No 77
>cd04950 GT1_like_1 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=99.30 E-value=2.2e-11 Score=119.33 Aligned_cols=131 Identities=13% Similarity=0.032 Sum_probs=97.7
Q ss_pred HHHHHHhcCCCEEEEcCHHHHHHHHHHhCCCCceEEecCCCCCCCCCCCCCC-------CCCCCCEEEEEecCCCccChH
Q 016925 213 WMYGLVGSCADLAMVNSSWTQSHIEKLWGIPDRIKRVYPPCDTSGLQVLPLE-------RSTEYPAIISVAQFRPEKAHP 285 (380)
Q Consensus 213 ~l~~~~~~~ad~ii~~S~~~~~~i~~~~~~~~k~~vi~~gvd~~~~~~~~~~-------~~~~~~~il~VGRl~p~K~~d 285 (380)
..++.+.+.||.|+|+|+..++.+.+. + .++.+++||+|.+.|.+.+.. ...+++.++|+|++.+.++++
T Consensus 145 ~~e~~~~~~ad~vi~~S~~l~~~~~~~-~--~~i~~i~ngvd~~~f~~~~~~~~~~~~~~~~~~~~i~y~G~l~~~~d~~ 221 (373)
T cd04950 145 EAERRLLKRADLVFTTSPSLYEAKRRL-N--PNVVLVPNGVDYEHFAAARDPPPPPADLAALPRPVIGYYGAIAEWLDLE 221 (373)
T ss_pred HHHHHHHHhCCEEEECCHHHHHHHhhC-C--CCEEEcccccCHHHhhcccccCCChhHHhcCCCCEEEEEeccccccCHH
Confidence 456777889999999999999887764 3 588999999998777643211 113468999999999988877
Q ss_pred HHHHHHHHHHHHccCCCCCCeEEEEcCCCCCCCHHHHHHHHHHHHhcCCCCcEEEccCCCHHHHHHHHhhccEEEeech
Q 016925 286 LQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRSVLTIFMHLFVFTMKWQ 364 (380)
Q Consensus 286 ~li~A~~~l~~~~~~~~~~~~LvIvG~g~~~~~~~~~~~L~~la~~lgl~~~V~f~G~v~~~el~~ly~~a~vf~~~~~ 364 (380)
.+.+ ++ +.. |+++|+|+|++.... +..+ +.-.++|+|+|.+++++++.+|+.||+++++..
T Consensus 222 ll~~-la---~~~----p~~~~vliG~~~~~~------~~~~----~~~~~nV~~~G~~~~~~l~~~l~~~Dv~l~P~~ 282 (373)
T cd04950 222 LLEA-LA---KAR----PDWSFVLIGPVDVSI------DPSA----LLRLPNVHYLGPKPYKELPAYLAGFDVAILPFR 282 (373)
T ss_pred HHHH-HH---HHC----CCCEEEEECCCcCcc------ChhH----hccCCCEEEeCCCCHHHHHHHHHhCCEEecCCc
Confidence 5543 33 222 899999999862111 1111 112478999999999999999999999998764
No 78
>cd03793 GT1_Glycogen_synthase_GSY2_like Glycogen synthase, which is most closely related to the GT1 family of glycosyltransferases, catalyzes the transfer of a glucose molecule from UDP-glucose to a terminal branch of a glycogen molecule, a rate-limit step of glycogen biosynthesis. GSY2, the member of this family in S. cerevisiae, has been shown to possess glycogen synthase activity.
Probab=99.28 E-value=2.7e-10 Score=114.56 Aligned_cols=85 Identities=14% Similarity=0.081 Sum_probs=67.4
Q ss_pred HHHHHHhcCCCEEEEcCHHHHHHHHHHhCCCCceEEecCCCCCCCCCCCCC------------------------CCCCC
Q 016925 213 WMYGLVGSCADLAMVNSSWTQSHIEKLWGIPDRIKRVYPPCDTSGLQVLPL------------------------ERSTE 268 (380)
Q Consensus 213 ~l~~~~~~~ad~ii~~S~~~~~~i~~~~~~~~k~~vi~~gvd~~~~~~~~~------------------------~~~~~ 268 (380)
.+|+.+...||.++|+|+.++.+++.+++.+... |++||+|.+.|.+... .-.++
T Consensus 218 ~iE~~aa~~Ad~fttVS~it~~E~~~Ll~~~pd~-ViPNGid~~~f~~~~e~~~~~~~~k~ki~~f~~~~~~~~~~~~~d 296 (590)
T cd03793 218 CIERAAAHCAHVFTTVSEITAYEAEHLLKRKPDV-VLPNGLNVKKFSALHEFQNLHAQSKEKINEFVRGHFYGHYDFDLD 296 (590)
T ss_pred HHHHHHHhhCCEEEECChHHHHHHHHHhCCCCCE-EeCCCcchhhcccchhhhhhhHHhhhhhhHHHHHHHhhhcCCCCC
Confidence 3788888999999999999999999999875334 9999999887654220 00124
Q ss_pred CCEEEE-EecCCC-ccChHHHHHHHHHHHHHc
Q 016925 269 YPAIIS-VAQFRP-EKAHPLQLEAFSVALRKL 298 (380)
Q Consensus 269 ~~~il~-VGRl~p-~K~~d~li~A~~~l~~~~ 298 (380)
++.+++ +||+++ +||+|.+|+|++++....
T Consensus 297 ~tli~f~~GR~e~~nKGiDvlIeAl~rLn~~l 328 (590)
T cd03793 297 KTLYFFTAGRYEFSNKGADMFLEALARLNYLL 328 (590)
T ss_pred CeEEEEEeeccccccCCHHHHHHHHHHHHHHH
Confidence 566667 799999 999999999999987643
No 79
>COG0297 GlgA Glycogen synthase [Carbohydrate transport and metabolism]
Probab=99.24 E-value=1.7e-09 Score=107.95 Aligned_cols=142 Identities=16% Similarity=0.040 Sum_probs=105.4
Q ss_pred HHHHhcCCCEEEEcCHHHHHHHH-HHhC-----C----CCceEEecCCCCCCCCCCC--------------C-C------
Q 016925 215 YGLVGSCADLAMVNSSWTQSHIE-KLWG-----I----PDRIKRVYPPCDTSGLQVL--------------P-L------ 263 (380)
Q Consensus 215 ~~~~~~~ad~ii~~S~~~~~~i~-~~~~-----~----~~k~~vi~~gvd~~~~~~~--------------~-~------ 263 (380)
.+..+..||.|.|+|..-++++. ..++ . ..+..-|.||+|.+...|. + .
T Consensus 202 lK~gi~~ad~vttVSptYa~Ei~t~~~g~gl~g~l~~~~~~l~GI~NgiD~~~wnp~~d~~~~~~y~~~~~~~k~~nk~~ 281 (487)
T COG0297 202 LKGGLYYADAVTTVSPTYAGEIYTPEYGEGLEGLLSWRSGKLSGILNGIDYDLWNPETDPYIAANYSAEVLPAKAENKVA 281 (487)
T ss_pred hhhhheeccEEEEECHHHHHhhccccccccchhhhhhccccEEEEEeeEEecccCcccccchhccCCccchhhhHHHHHH
Confidence 34556799999999998888876 1121 1 2356778898886543321 0 0
Q ss_pred -------CCCCCCCEEEEEecCCCccChHHHHHHHHHHHHHccCCCCCCeEEEEcCCCCCCCHHHHHHHHHHHHhcCCCC
Q 016925 264 -------ERSTEYPAIISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDG 336 (380)
Q Consensus 264 -------~~~~~~~~il~VGRl~p~K~~d~li~A~~~l~~~~~~~~~~~~LvIvG~g~~~~~~~~~~~L~~la~~lgl~~ 336 (380)
+...+.|++.+|||++.|||+|.+++|+..+.+. .++++|.|.|. ..+.+.+..+++...-
T Consensus 282 L~~~~gL~~~~~~pl~~~vsRl~~QKG~dl~~~~i~~~l~~------~~~~vilG~gd----~~le~~~~~la~~~~~-- 349 (487)
T COG0297 282 LQERLGLDVDLPGPLFGFVSRLTAQKGLDLLLEAIDELLEQ------GWQLVLLGTGD----PELEEALRALASRHPG-- 349 (487)
T ss_pred HHHHhCCCCCCCCcEEEEeeccccccchhHHHHHHHHHHHh------CceEEEEecCc----HHHHHHHHHHHHhcCc--
Confidence 0013569999999999999999999999999874 49999999872 4577899999988754
Q ss_pred cEEEccCCCHHHHHHHHhhccEEEe-echhhHH
Q 016925 337 NVEFYKNLLYRSVLTIFMHLFVFTM-KWQLVYD 368 (380)
Q Consensus 337 ~V~f~G~v~~~el~~ly~~a~vf~~-~~~~~~~ 368 (380)
++.+.-..+..-...+|+.||+++| +.-|++|
T Consensus 350 ~~~~~i~~~~~la~~i~agaD~~lmPSrfEPcG 382 (487)
T COG0297 350 RVLVVIGYDEPLAHLIYAGADVILMPSRFEPCG 382 (487)
T ss_pred eEEEEeeecHHHHHHHHhcCCEEEeCCcCcCCc
Confidence 5666555556667799999999998 6678887
No 80
>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=99.24 E-value=5.6e-11 Score=126.27 Aligned_cols=127 Identities=16% Similarity=0.117 Sum_probs=91.9
Q ss_pred CceEEecCCCCCCCCCCCCCC------------CCCCCCEEEEEecCCCccChHHHHHHHHHHHHHccCCCCCCe----E
Q 016925 244 DRIKRVYPPCDTSGLQVLPLE------------RSTEYPAIISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPR----L 307 (380)
Q Consensus 244 ~k~~vi~~gvd~~~~~~~~~~------------~~~~~~~il~VGRl~p~K~~d~li~A~~~l~~~~~~~~~~~~----L 307 (380)
.++.++++|+|++.|.+.... ...++++|++|||+++.||++.+|+||+.+.+++ |+++ |
T Consensus 242 ~~I~viP~GID~~~f~~~~~~~~~~~~~~~lr~~~~~~~lIl~VgRLd~~KGi~~lL~Afe~lL~~~----P~~~~kvvL 317 (797)
T PLN03063 242 TRVAVFPIGIDPERFINTCELPEVKQHMKELKRFFAGRKVILGVDRLDMIKGIPQKYLAFEKFLEEN----PEWRDKVML 317 (797)
T ss_pred EEEEEEecccCHHHHHHHhcChhHHHHHHHHHHhcCCCeEEEEecccccccCHHHHHHHHHHHHHhC----ccccCcEEE
Confidence 578899999998766532110 0124679999999999999999999999998876 7664 4
Q ss_pred EEEcCCCCCCCHHHHHHHHHHHHhcC--CCCc--------EE-EccCCCHHHHHHHHhhccEEEe-echhhHHHHHHHHH
Q 016925 308 QFVGSCRNKSDEERLQSLKDKSIELK--VDGN--------VE-FYKNLLYRSVLTIFMHLFVFTM-KWQLVYDEFLKLYL 375 (380)
Q Consensus 308 vIvG~g~~~~~~~~~~~L~~la~~lg--l~~~--------V~-f~G~v~~~el~~ly~~a~vf~~-~~~~~~~~~~~~~~ 375 (380)
+.++.+. ..+.+.+++|++.+++++ +.++ |+ +.+.++++++..+|+.||+|++ +.+|.||-=.+-|+
T Consensus 318 vqia~ps-r~~~~~y~~l~~~v~~l~g~In~~~g~~~~~pv~~l~~~v~~~el~aly~~ADvfvvtSlrEGmnLv~lEam 396 (797)
T PLN03063 318 VQIAVPT-RNDVPEYQKLKSQVHELVGRINGRFGSVSSVPIHHLDCSVDFNYLCALYAITDVMLVTSLRDGMNLVSYEFV 396 (797)
T ss_pred EEEecCC-CCchHHHHHHHHHHHHHHHHhhcccccCCCceeEEecCCCCHHHHHHHHHhCCEEEeCccccccCcchhhHh
Confidence 4444322 233455677888888775 4332 33 3457899999999999999986 78999986555554
No 81
>PLN02605 monogalactosyldiacylglycerol synthase
Probab=99.23 E-value=4.5e-10 Score=110.45 Aligned_cols=133 Identities=12% Similarity=0.007 Sum_probs=93.0
Q ss_pred hcCCCEEEEcCHHHHHHHHHHhCCCCceEEecCCCCCCCCCCCC--------CCCCCCCCEEEEEecCCCccChHHHHHH
Q 016925 219 GSCADLAMVNSSWTQSHIEKLWGIPDRIKRVYPPCDTSGLQVLP--------LERSTEYPAIISVAQFRPEKAHPLQLEA 290 (380)
Q Consensus 219 ~~~ad~ii~~S~~~~~~i~~~~~~~~k~~vi~~gvd~~~~~~~~--------~~~~~~~~~il~VGRl~p~K~~d~li~A 290 (380)
.+.+|.+++.|+.+++.+.+....++++.++.+|++.+...+.. ..-.++++.|+++||..+.|++..++++
T Consensus 148 ~~~~d~~~~~s~~~~~~l~~~g~~~~ki~v~g~~v~~~f~~~~~~~~~~r~~~gl~~~~~~il~~Gg~~g~~~~~~li~~ 227 (382)
T PLN02605 148 HKGVTRCFCPSEEVAKRALKRGLEPSQIRVYGLPIRPSFARAVRPKDELRRELGMDEDLPAVLLMGGGEGMGPLEETARA 227 (382)
T ss_pred cCCCCEEEECCHHHHHHHHHcCCCHHHEEEECcccCHhhccCCCCHHHHHHHcCCCCCCcEEEEECCCcccccHHHHHHH
Confidence 36899999999999999887643357888888888754322211 0111356899999999999999999999
Q ss_pred HHHHHHHccCCCCCCe-EEEEcCCCCCCCHHHHHHHHHHHHhcCCCCcEEEccCCCHHHHHHHHhhccEEEee
Q 016925 291 FSVALRKLDADLPRPR-LQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRSVLTIFMHLFVFTMK 362 (380)
Q Consensus 291 ~~~l~~~~~~~~~~~~-LvIvG~g~~~~~~~~~~~L~~la~~lgl~~~V~f~G~v~~~el~~ly~~a~vf~~~ 362 (380)
+..+........++.. ++++|.+ .+..++|+++ ...++|.|+|+++ +++++|+.||+++.+
T Consensus 228 l~~~~~~~~~~~~~~~~~vi~G~~-----~~~~~~L~~~----~~~~~v~~~G~~~--~~~~l~~aaDv~V~~ 289 (382)
T PLN02605 228 LGDSLYDKNLGKPIGQVVVICGRN-----KKLQSKLESR----DWKIPVKVRGFVT--NMEEWMGACDCIITK 289 (382)
T ss_pred HHHhhccccccCCCceEEEEECCC-----HHHHHHHHhh----cccCCeEEEeccc--cHHHHHHhCCEEEEC
Confidence 9865311000025565 6777754 2334555543 3346799999986 799999999999974
No 82
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=99.23 E-value=6.6e-10 Score=109.62 Aligned_cols=126 Identities=13% Similarity=0.106 Sum_probs=86.6
Q ss_pred cCCCEEEEcCHHHHHHHHHHhCCCCceEEecCCCCCCCCCC-CC-------CCCCCCCC-EEEEEecCCCccChHHHHHH
Q 016925 220 SCADLAMVNSSWTQSHIEKLWGIPDRIKRVYPPCDTSGLQV-LP-------LERSTEYP-AIISVAQFRPEKAHPLQLEA 290 (380)
Q Consensus 220 ~~ad~ii~~S~~~~~~i~~~~~~~~k~~vi~~gvd~~~~~~-~~-------~~~~~~~~-~il~VGRl~p~K~~d~li~A 290 (380)
+.+|.+++.|+.+++.+.+....++++.++.+|++.. |.. .+ ..-.++++ .+++.|++.+.|+++.++++
T Consensus 146 ~~~d~~~v~s~~~~~~l~~~gi~~~ki~v~GiPv~~~-f~~~~~~~~~~~~~~l~~~~~~ilv~~G~lg~~k~~~~li~~ 224 (391)
T PRK13608 146 PYSTRYYVATKETKQDFIDVGIDPSTVKVTGIPIDNK-FETPIDQKQWLIDNNLDPDKQTILMSAGAFGVSKGFDTMITD 224 (391)
T ss_pred CCCCEEEECCHHHHHHHHHcCCCHHHEEEECeecChH-hcccccHHHHHHHcCCCCCCCEEEEECCCcccchhHHHHHHH
Confidence 6799999999999999887532246788877777632 221 11 00012344 45679999999999999998
Q ss_pred HHHHHHHccCCCCCCeEEEEcCCCCCCCHHHHHHHHHHHHhcCCCCcEEEccCCCHHHHHHHHhhccEEEee
Q 016925 291 FSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRSVLTIFMHLFVFTMK 362 (380)
Q Consensus 291 ~~~l~~~~~~~~~~~~LvIvG~g~~~~~~~~~~~L~~la~~lgl~~~V~f~G~v~~~el~~ly~~a~vf~~~ 362 (380)
+. +. .++++++++++. +.+.++++++ .++..++|.|+|+++ +++++|+.||+++..
T Consensus 225 ~~---~~----~~~~~~vvv~G~----~~~l~~~l~~---~~~~~~~v~~~G~~~--~~~~~~~~aDl~I~k 280 (391)
T PRK13608 225 IL---AK----SANAQVVMICGK----SKELKRSLTA---KFKSNENVLILGYTK--HMNEWMASSQLMITK 280 (391)
T ss_pred HH---hc----CCCceEEEEcCC----CHHHHHHHHH---HhccCCCeEEEeccc--hHHHHHHhhhEEEeC
Confidence 63 22 268898777532 2233344444 345567899999985 799999999999973
No 83
>PF13579 Glyco_trans_4_4: Glycosyl transferase 4-like domain; PDB: 3C4Q_B 3C4V_A 3C48_B 1Z2T_A.
Probab=99.20 E-value=1.3e-10 Score=98.36 Aligned_cols=155 Identities=20% Similarity=0.191 Sum_probs=76.9
Q ss_pred CChhHHHHHHHHHHHHhCCCceEEEEcCCCCCChhhHHHHHHhhcCccccCCCeEEEeccccccccCCCCccceehhhHh
Q 016925 48 GGGERVLWCAVKAIQEESPDLDCIVYTGDHDAFPDSLLARAVDRFGVELLHPPKVVHLYRRKWIEESTYPRFTMIGQSFG 127 (380)
Q Consensus 48 GG~ervl~~la~~L~~~g~~~~v~v~t~~~~~~~~~~~~~~~~~~g~~l~~~v~~v~l~~~~~~~~~~~~~~~~~~~~~~ 127 (380)
||+++++.+++++|+++| |+|.+++...+.... . ...+++++..++... ... .+.... .+
T Consensus 1 GG~~~~~~~l~~~L~~~G--~~V~v~~~~~~~~~~----------~-~~~~~~~~~~~~~~~----~~~-~~~~~~-~~- 60 (160)
T PF13579_consen 1 GGIERYVRELARALAARG--HEVTVVTPQPDPEDD----------E-EEEDGVRVHRLPLPR----RPW-PLRLLR-FL- 60 (160)
T ss_dssp SHHHHHHHHHHHHHHHTT---EEEEEEE---GGG-----------S-EEETTEEEEEE--S-----SSS-GGGHCC-HH-
T ss_pred CCHHHHHHHHHHHHHHCC--CEEEEEecCCCCccc----------c-cccCCceEEeccCCc----cch-hhhhHH-HH-
Confidence 799999999999999999 778788754321100 0 011233444443211 000 011111 11
Q ss_pred HHHHHHHHH--HhcCCcEEEeCCCchhhHH-HHh-HhCCcEEEEEeCCcchhhHHHhhhccccccCCCccccccchhhhh
Q 016925 128 SVYLSWEAL--CKFTPLYYFDTSGYAFTYP-LAR-IFGCRVICYTHYPTISLDMISRVREGSSMYNNNASIAQSNWLSQC 203 (380)
Q Consensus 128 ~~~~~~~~l--~~~~pDi~~~~~~~~~~~~-l~~-~~~~p~v~~~H~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (380)
....+.+ ++.+||+++++........ +++ ..++|+|+++|..... . . ..+.
T Consensus 61 --~~~~~~l~~~~~~~Dvv~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~---------------~-----~---~~~~ 115 (160)
T PF13579_consen 61 --RRLRRLLAARRERPDVVHAHSPTAGLVAALARRRRGIPLVVTVHGTLFR---------------R-----G---SRWK 115 (160)
T ss_dssp --HHHHHHCHHCT---SEEEEEHHHHHHHHHHHHHHHT--EEEE-SS-T-----------------------------HH
T ss_pred --HHHHHHHhhhccCCeEEEecccchhHHHHHHHHccCCcEEEEECCCchh---------------h-----c---cchh
Confidence 1112334 6788998765443221112 334 5689999999953210 0 0 1111
Q ss_pred HHHHHHHHHHHHHHHhcCCCEEEEcCHHHHHHHHHHhCC-CCceEEecCC
Q 016925 204 KIVYYTFFSWMYGLVGSCADLAMVNSSWTQSHIEKLWGI-PDRIKRVYPP 252 (380)
Q Consensus 204 ~~~~~~~~~~l~~~~~~~ad~ii~~S~~~~~~i~~~~~~-~~k~~vi~~g 252 (380)
+ +++..+++...+.||.++++|+.+++.+.+ ++. ++++.||+||
T Consensus 116 ~----~~~~~~~~~~~~~ad~vi~~S~~~~~~l~~-~g~~~~ri~vipnG 160 (160)
T PF13579_consen 116 R----RLYRWLERRLLRRADRVIVVSEAMRRYLRR-YGVPPDRIHVIPNG 160 (160)
T ss_dssp H----HHHHHHHHHHHHH-SEEEESSHHHHHHHHH-H---GGGEEE----
T ss_pred h----HHHHHHHHHHHhcCCEEEECCHHHHHHHHH-hCCCCCcEEEeCcC
Confidence 1 233456778888999999999999999999 555 5799999997
No 84
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=99.14 E-value=1.5e-09 Score=115.05 Aligned_cols=129 Identities=16% Similarity=0.101 Sum_probs=88.6
Q ss_pred CceEEecCCCCCCCCCCCCC------------CCCCCCCEEEEEecCCCccChHHHHHHHHHHHHHccCCCCCCeEEEEc
Q 016925 244 DRIKRVYPPCDTSGLQVLPL------------ERSTEYPAIISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVG 311 (380)
Q Consensus 244 ~k~~vi~~gvd~~~~~~~~~------------~~~~~~~~il~VGRl~p~K~~d~li~A~~~l~~~~~~~~~~~~LvIvG 311 (380)
.++.++++|+|++.|.+... ....++++|++|||+++.||++.+|+||+.+.+++++-..+++|+++|
T Consensus 228 ~~v~v~p~GID~~~f~~~~~~~~~~~~~~~lr~~~~~~~~il~VgRl~~~Kgi~~~l~A~~~ll~~~p~~~~~v~lv~v~ 307 (726)
T PRK14501 228 VRVDAFPMGIDYDKFHNSAQDPEVQEEIRRLRQDLRGRKIILSIDRLDYTKGIPRRLLAFERFLEKNPEWRGKVRLVQVA 307 (726)
T ss_pred EEEEEEECeEcHHHHHHHhcCchHHHHHHHHHHHcCCCEEEEEecCcccccCHHHHHHHHHHHHHhCccccCCEEEEEEe
Confidence 36888999999887754210 011245799999999999999999999999987762111236899988
Q ss_pred CCCCCC---CHHHHHHHHHHHHhcC----C---CCcEEEccCCCHHHHHHHHhhccEEEe-echhhHHHHHH
Q 016925 312 SCRNKS---DEERLQSLKDKSIELK----V---DGNVEFYKNLLYRSVLTIFMHLFVFTM-KWQLVYDEFLK 372 (380)
Q Consensus 312 ~g~~~~---~~~~~~~L~~la~~lg----l---~~~V~f~G~v~~~el~~ly~~a~vf~~-~~~~~~~~~~~ 372 (380)
.+.... ..++.+++++++.+.+ . ..-+.|.|.++++|+..+|+.||+|++ +..|.||--.+
T Consensus 308 ~~sr~~~~~~~~l~~~~~~~v~~in~~~~~~~~~pv~~~~~~~~~~~l~~ly~~aDv~v~~S~~EG~~lv~~ 379 (726)
T PRK14501 308 VPSRTGVPQYQEMKREIDELVGRINGEFGTVDWTPIHYFYRSLPFEELVALYRAADVALVTPLRDGMNLVAK 379 (726)
T ss_pred cCCCcchHHHHHHHHHHHHHHHHHHhhcCCCCcceEEEEeCCCCHHHHHHHHHhccEEEecccccccCcccc
Confidence 542211 1233344444444332 1 123568899999999999999999987 78888874333
No 85
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st
Probab=99.12 E-value=3.4e-09 Score=102.96 Aligned_cols=133 Identities=14% Similarity=0.073 Sum_probs=97.8
Q ss_pred cCCCEEEEcCHHHHHHHHHHhCCCCceEEecCCC-CCCCCCCC----C-----CCCCCCCCEEEEEecCCC---ccChHH
Q 016925 220 SCADLAMVNSSWTQSHIEKLWGIPDRIKRVYPPC-DTSGLQVL----P-----LERSTEYPAIISVAQFRP---EKAHPL 286 (380)
Q Consensus 220 ~~ad~ii~~S~~~~~~i~~~~~~~~k~~vi~~gv-d~~~~~~~----~-----~~~~~~~~~il~VGRl~p---~K~~d~ 286 (380)
+.+|.++|.|+..++.+.+..-.++++.++.||+ |...+... . ....+++..+++.||... .|+++.
T Consensus 140 ~~ad~~~~~s~~~~~~l~~~G~~~~kI~vign~v~d~~~~~~~~~~~~~~~~~~~~~~~~~vlv~~~r~~~~~~~k~~~~ 219 (363)
T cd03786 140 KLSDLHFAPTEEARRNLLQEGEPPERIFVVGNTMIDALLRLLELAKKELILELLGLLPKKYILVTLHRVENVDDGEQLEE 219 (363)
T ss_pred HHhhhccCCCHHHHHHHHHcCCCcccEEEECchHHHHHHHHHHhhccchhhhhcccCCCCEEEEEeCCccccCChHHHHH
Confidence 4679999999999999887533356888999885 53211110 0 001112335678999885 799999
Q ss_pred HHHHHHHHHHHccCCCCCCeEEEEcCCCCCCCHHHHHHHHHHHHhcCC-CCcEEEccCCCHHHHHHHHhhccEEEeech
Q 016925 287 QLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKV-DGNVEFYKNLLYRSVLTIFMHLFVFTMKWQ 364 (380)
Q Consensus 287 li~A~~~l~~~~~~~~~~~~LvIvG~g~~~~~~~~~~~L~~la~~lgl-~~~V~f~G~v~~~el~~ly~~a~vf~~~~~ 364 (380)
+++|++.+.+ +++.+++.|++. ..+++++.+.++++ .++|.|.|....+++..+|+.||+++.+..
T Consensus 220 l~~al~~l~~------~~~~vi~~~~~~------~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~ad~~v~~Sg 286 (363)
T cd03786 220 ILEALAELAE------EDVPVVFPNHPR------TRPRIREAGLEFLGHHPNVLLISPLGYLYFLLLLKNADLVLTDSG 286 (363)
T ss_pred HHHHHHHHHh------cCCEEEEECCCC------hHHHHHHHHHhhccCCCCEEEECCcCHHHHHHHHHcCcEEEEcCc
Confidence 9999998843 257777777643 24678888888887 789999998888999999999999998765
No 86
>TIGR02398 gluc_glyc_Psyn glucosylglycerol-phosphate synthase. Glucosylglycerol-phosphate synthase catalyzes the key step in the biosynthesis of the osmolyte glucosylglycerol. It is known in several cyanobacteria and in Pseudomonas anguilliseptica. The enzyme is closely related to the alpha,alpha-trehalose-phosphate synthase, likewise involved in osmolyte biosynthesis, of E. coli and many other bacteria. A close homolog from Xanthomonas campestris is excluded from this model and scores between trusted and noise.
Probab=99.08 E-value=9.8e-09 Score=102.87 Aligned_cols=130 Identities=14% Similarity=0.037 Sum_probs=98.5
Q ss_pred ceEEecCCCCCCCCCCCCC-C-----------CCCCCCEEEEEecCCCccChHHHHHHHHHHHHHccCCCCCCeEEEEcC
Q 016925 245 RIKRVYPPCDTSGLQVLPL-E-----------RSTEYPAIISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGS 312 (380)
Q Consensus 245 k~~vi~~gvd~~~~~~~~~-~-----------~~~~~~~il~VGRl~p~K~~d~li~A~~~l~~~~~~~~~~~~LvIvG~ 312 (380)
++.+++.|+|++.|..... . .-.+++.|++|+|+++.||++..|+||+.+.+++++-..++.|+++|.
T Consensus 249 ~v~~~PiGID~~~f~~~~~~~~~~~~~~~lr~~~~~~kiIl~VDRLDy~KGI~~kl~Afe~~L~~~Pe~~gkv~Lvqi~~ 328 (487)
T TIGR02398 249 KLGAHPVGTDPERIRSALAAASIREMMERIRSELAGVKLILSAERVDYTKGILEKLNAYERLLERRPELLGKVTLVTACV 328 (487)
T ss_pred EEEEEECEecHHHHHHHhcCchHHHHHHHHHHHcCCceEEEEecccccccCHHHHHHHHHHHHHhCccccCceEEEEEeC
Confidence 4778899999887754210 0 012467999999999999999999999999988733233469999997
Q ss_pred CCCCC---CHHHHHHHHHHHHhc-------CCCCcEEEccCCCHHHHHHHHhhccEEEe-echhhHHHHHHHH
Q 016925 313 CRNKS---DEERLQSLKDKSIEL-------KVDGNVEFYKNLLYRSVLTIFMHLFVFTM-KWQLVYDEFLKLY 374 (380)
Q Consensus 313 g~~~~---~~~~~~~L~~la~~l-------gl~~~V~f~G~v~~~el~~ly~~a~vf~~-~~~~~~~~~~~~~ 374 (380)
+.... ..++.+++++++.+. +...-+.|.|.++++++..+|+.||+++. +.+|+++=--|-|
T Consensus 329 psr~~v~~y~~l~~~v~~~v~~IN~~fg~~~~~pv~~~~~~v~~~el~alYr~ADV~lvT~lrDGmNLVa~Ey 401 (487)
T TIGR02398 329 PAASGMTIYDELQGQIEQAVGRINGRFARIGWTPLQFFTRSLPYEEVSAWFAMADVMWITPLRDGLNLVAKEY 401 (487)
T ss_pred CCcccchHHHHHHHHHHHHHHHHhhccCCCCCccEEEEcCCCCHHHHHHHHHhCCEEEECccccccCcchhhH
Confidence 64322 234566777777765 66777889999999999999999999775 8899988544444
No 87
>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins containign this domain transfer UDP, ADP, GDP or CMP linked sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. The bacterial enzymes are involved in various biosynthetic processes that include exopolysaccharide biosynthesis, lipopolysaccharide core biosynthesis and the biosynthesis of the slime polysaccaride colanic acid. Mutations in this domain of the human N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein are the cause of paroxysmal nocturnal hemoglobinuria (PNH), an acquired hemolytic blood disorder characterised by venous thrombosis, erythrocyte hemolysis, infections and defective hematopoiesis.; GO: 0009058 biosynthetic process; PDB: 2L7C_A 2IV3_B 2IUY_B 2XA9_A 2XA1_B 2X6R_A 2XMP_B 2XA2_B 2X6Q_A 3QHP_B ....
Probab=99.07 E-value=6.7e-10 Score=96.19 Aligned_cols=94 Identities=21% Similarity=0.252 Sum_probs=81.4
Q ss_pred CCCEEEEEecCCCccChHHHHHHHHHHHHH-ccCCCCCCeEEEEcCCCCCCCHHHHHHHHHHHHhcCCCCcEEEccCCCH
Q 016925 268 EYPAIISVAQFRPEKAHPLQLEAFSVALRK-LDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLY 346 (380)
Q Consensus 268 ~~~~il~VGRl~p~K~~d~li~A~~~l~~~-~~~~~~~~~LvIvG~g~~~~~~~~~~~L~~la~~lgl~~~V~f~G~v~~ 346 (380)
++++|+++||+.+.||++.+++|+..+.++ . +++.|+|+|.+. +...++.+++.+++.++|.|.|.+++
T Consensus 14 ~~~~il~~g~~~~~K~~~~li~a~~~l~~~~~----~~~~l~i~G~~~------~~~~~~~~~~~~~~~~~i~~~~~~~~ 83 (172)
T PF00534_consen 14 KKKIILFIGRLDPEKGIDLLIEAFKKLKEKKN----PNYKLVIVGDGE------YKKELKNLIEKLNLKENIIFLGYVPD 83 (172)
T ss_dssp TSEEEEEESESSGGGTHHHHHHHHHHHHHHHH----TTEEEEEESHCC------HHHHHHHHHHHTTCGTTEEEEESHSH
T ss_pred CCeEEEEEecCccccCHHHHHHHHHHHHhhcC----CCeEEEEEcccc------cccccccccccccccccccccccccc
Confidence 568999999999999999999999999764 3 899999999542 45789999999999999999999999
Q ss_pred HHHHHHHhhccEEEe-echhhHHHHH
Q 016925 347 RSVLTIFMHLFVFTM-KWQLVYDEFL 371 (380)
Q Consensus 347 ~el~~ly~~a~vf~~-~~~~~~~~~~ 371 (380)
+++.++|+.||+++. +..|+||-=+
T Consensus 84 ~~l~~~~~~~di~v~~s~~e~~~~~~ 109 (172)
T PF00534_consen 84 DELDELYKSSDIFVSPSRNEGFGLSL 109 (172)
T ss_dssp HHHHHHHHHTSEEEE-BSSBSS-HHH
T ss_pred cccccccccceecccccccccccccc
Confidence 999999999999886 5568887633
No 88
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=99.07 E-value=3.2e-08 Score=96.56 Aligned_cols=131 Identities=11% Similarity=0.049 Sum_probs=93.0
Q ss_pred CCCEEEEcCHHHHHHHHHHhCC-CCceEEecCCC-CCCCCC-C-C---CCC--CCCCCCEEEEEe-cC-CCccChHHHHH
Q 016925 221 CADLAMVNSSWTQSHIEKLWGI-PDRIKRVYPPC-DTSGLQ-V-L---PLE--RSTEYPAIISVA-QF-RPEKAHPLQLE 289 (380)
Q Consensus 221 ~ad~ii~~S~~~~~~i~~~~~~-~~k~~vi~~gv-d~~~~~-~-~---~~~--~~~~~~~il~VG-Rl-~p~K~~d~li~ 289 (380)
.+|.+++.|+..++.+.+. |. ++++.++.||+ |..... . . ... -..+++++++.+ |. ...|+++.+++
T Consensus 141 ~ad~~~~~s~~~~~~l~~~-G~~~~~I~vign~~~d~~~~~~~~~~~~~~~~~~~~~~~~vl~~~hr~~~~~k~~~~ll~ 219 (365)
T TIGR00236 141 IADLHFAPTEQAKDNLLRE-NVKADSIFVTGNTVIDALLTNVEIAYSSPVLSEFGEDKRYILLTLHRRENVGEPLENIFK 219 (365)
T ss_pred HHHhccCCCHHHHHHHHHc-CCCcccEEEeCChHHHHHHHHHhhccchhHHHhcCCCCCEEEEecCchhhhhhHHHHHHH
Confidence 4799999999999999885 44 56899999996 421110 0 0 000 011245666665 54 35699999999
Q ss_pred HHHHHHHHccCCCCCCeEEEEcCCCCCCCHHHHHHHHHHHHhcCCCCcEEEccCCCHHHHHHHHhhccEEEeec
Q 016925 290 AFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRSVLTIFMHLFVFTMKW 363 (380)
Q Consensus 290 A~~~l~~~~~~~~~~~~LvIvG~g~~~~~~~~~~~L~~la~~lgl~~~V~f~G~v~~~el~~ly~~a~vf~~~~ 363 (380)
|+..+.++. |+++++++|.+. .+..+. +.+.++..++|.|+|.++..+...+|+.||+++.+.
T Consensus 220 a~~~l~~~~----~~~~~vi~~~~~----~~~~~~---~~~~~~~~~~v~~~~~~~~~~~~~~l~~ad~vv~~S 282 (365)
T TIGR00236 220 AIREIVEEF----EDVQIVYPVHLN----PVVREP---LHKHLGDSKRVHLIEPLEYLDFLNLAANSHLILTDS 282 (365)
T ss_pred HHHHHHHHC----CCCEEEEECCCC----hHHHHH---HHHHhCCCCCEEEECCCChHHHHHHHHhCCEEEECC
Confidence 999987654 789999987542 122222 344557778999999999999999999999998765
No 89
>PRK09814 beta-1,6-galactofuranosyltransferase; Provisional
Probab=98.97 E-value=3.4e-08 Score=95.34 Aligned_cols=126 Identities=11% Similarity=-0.015 Sum_probs=81.6
Q ss_pred HHHHHhcCCCEEEEcCHHHHHHHHHHhCCCCceEEecCCCCCCCCCCCCCCCCCCCCEEEEEecCCCccChHHHHHHHHH
Q 016925 214 MYGLVGSCADLAMVNSSWTQSHIEKLWGIPDRIKRVYPPCDTSGLQVLPLERSTEYPAIISVAQFRPEKAHPLQLEAFSV 293 (380)
Q Consensus 214 l~~~~~~~ad~ii~~S~~~~~~i~~~~~~~~k~~vi~~gvd~~~~~~~~~~~~~~~~~il~VGRl~p~K~~d~li~A~~~ 293 (380)
.++...+.||.+||.|+.+++.+++.....+++.++.+..+........ ....++.++|+||+.....
T Consensus 116 ~~~~~~~~aD~iI~~S~~~~~~l~~~g~~~~~i~~~~~~~~~~~~~~~~--~~~~~~~i~yaG~l~k~~~---------- 183 (333)
T PRK09814 116 EEIDMLNLADVLIVHSKKMKDRLVEEGLTTDKIIVQGIFDYLNDIELVK--TPSFQKKINFAGNLEKSPF---------- 183 (333)
T ss_pred HHHHHHHhCCEEEECCHHHHHHHHHcCCCcCceEecccccccccccccc--cccCCceEEEecChhhchH----------
Confidence 3456678999999999999999987532234555443322221111111 1123568999999994321
Q ss_pred HHHHccCCCCCCeEEEEcCCCCCCCHHHHHHHHHHHHhcCCCCcEEEccCCCHHHHHHHHhhccEEEeechh-----hHH
Q 016925 294 ALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRSVLTIFMHLFVFTMKWQL-----VYD 368 (380)
Q Consensus 294 l~~~~~~~~~~~~LvIvG~g~~~~~~~~~~~L~~la~~lgl~~~V~f~G~v~~~el~~ly~~a~vf~~~~~~-----~~~ 368 (380)
+.+. .++++|+|+|+|+.. + +..++|+|+|.++++|++.+|+. ++.+ .|.+ .|+
T Consensus 184 l~~~----~~~~~l~i~G~g~~~------~---------~~~~~V~f~G~~~~eel~~~l~~-~~gL-v~~~~~~~~~~~ 242 (333)
T PRK09814 184 LKNW----SQGIKLTVFGPNPED------L---------ENSANISYKGWFDPEELPNELSK-GFGL-VWDGDTNDGEYG 242 (333)
T ss_pred HHhc----CCCCeEEEECCCccc------c---------ccCCCeEEecCCCHHHHHHHHhc-CcCe-EEcCCCCCccch
Confidence 1111 278999999987521 1 35679999999999999999998 4433 3443 477
Q ss_pred HHHH
Q 016925 369 EFLK 372 (380)
Q Consensus 369 ~~~~ 372 (380)
+|++
T Consensus 243 ~y~~ 246 (333)
T PRK09814 243 EYYK 246 (333)
T ss_pred hhhh
Confidence 7764
No 90
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=98.94 E-value=3.6e-08 Score=96.55 Aligned_cols=127 Identities=12% Similarity=0.077 Sum_probs=81.3
Q ss_pred hcCCCEEEEcCHHHHHHHHHHhCCCCceEEecCCCCCCCCC-CC------CCCCCCCCCEE-EEEe-cCCCc-cChHHHH
Q 016925 219 GSCADLAMVNSSWTQSHIEKLWGIPDRIKRVYPPCDTSGLQ-VL------PLERSTEYPAI-ISVA-QFRPE-KAHPLQL 288 (380)
Q Consensus 219 ~~~ad~ii~~S~~~~~~i~~~~~~~~k~~vi~~gvd~~~~~-~~------~~~~~~~~~~i-l~VG-Rl~p~-K~~d~li 288 (380)
.+.+|.+++.|+.+++.+.+. +. ++.++-|++...... +. .....++++.+ ++.| |.... +.++.++
T Consensus 132 ~~~~d~i~~~~~~~~~~~~~~-g~--~~~~~G~p~~~~~~~~~~~~~~~~~l~~~~~~~~il~~~gsr~~~~~~~~~~l~ 208 (380)
T PRK00025 132 AKATDHVLALFPFEAAFYDKL-GV--PVTFVGHPLADAIPLLPDRAAARARLGLDPDARVLALLPGSRGQEIKRLLPPFL 208 (380)
T ss_pred HHHHhhheeCCccCHHHHHhc-CC--CeEEECcCHHHhcccccChHHHHHHcCCCCCCCEEEEECCCCHHHHHHHHHHHH
Confidence 456899999999988887663 32 344554554211110 00 01111234554 4445 55454 4478999
Q ss_pred HHHHHHHHHccCCCCCCeEEEEcCCCCCCCHHHHHHHHHHHHhc-CCCCcEEEccCCCHHHHHHHHhhccEEEeec
Q 016925 289 EAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIEL-KVDGNVEFYKNLLYRSVLTIFMHLFVFTMKW 363 (380)
Q Consensus 289 ~A~~~l~~~~~~~~~~~~LvIvG~g~~~~~~~~~~~L~~la~~l-gl~~~V~f~G~v~~~el~~ly~~a~vf~~~~ 363 (380)
+|++.+.++. |+++++++|++. ++.++++++++++ |+. |.+.. +++.++|+.||+++++.
T Consensus 209 ~a~~~l~~~~----~~~~~ii~~~~~-----~~~~~~~~~~~~~~~~~--v~~~~----~~~~~~~~~aDl~v~~s 269 (380)
T PRK00025 209 KAAQLLQQRY----PDLRFVLPLVNP-----KRREQIEEALAEYAGLE--VTLLD----GQKREAMAAADAALAAS 269 (380)
T ss_pred HHHHHHHHhC----CCeEEEEecCCh-----hhHHHHHHHHhhcCCCC--eEEEc----ccHHHHHHhCCEEEECc
Confidence 9999987654 789999998631 3456788888877 665 65543 37999999999999853
No 91
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=98.92 E-value=1.1e-07 Score=93.59 Aligned_cols=182 Identities=12% Similarity=0.027 Sum_probs=114.1
Q ss_pred HHHHHHHhcCCcEEEeCCCchhhHHH---HhHhCCcEEEEEeCCcchhhHHHhhhccccccCCCccccccchhhhhHHHH
Q 016925 131 LSWEALCKFTPLYYFDTSGYAFTYPL---ARIFGCRVICYTHYPTISLDMISRVREGSSMYNNNASIAQSNWLSQCKIVY 207 (380)
Q Consensus 131 ~~~~~l~~~~pDi~~~~~~~~~~~~l---~~~~~~p~v~~~H~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (380)
...+.+++++||+++...+..+...+ ++..++|++.|+ .|... ... +.
T Consensus 80 ~~~~~l~~~kPd~vi~~g~~~~~~~~a~aa~~~gip~v~~i-~P~~w-------------------aw~----~~----- 130 (385)
T TIGR00215 80 EVVQLAKQAKPDLLVGIDAPDFNLTKELKKKDPGIKIIYYI-SPQVW-------------------AWR----KW----- 130 (385)
T ss_pred HHHHHHHhcCCCEEEEeCCCCccHHHHHHHhhCCCCEEEEe-CCcHh-------------------hcC----cc-----
Confidence 34556889999987754443332223 235689998665 34321 000 00
Q ss_pred HHHHHHHHHHHhcCCCEEEEcCHHHHHHHHHHhCCCCceEEecCCCCCCCCC--CC------CCCCCCCCCEEEEE--ec
Q 016925 208 YTFFSWMYGLVGSCADLAMVNSSWTQSHIEKLWGIPDRIKRVYPPCDTSGLQ--VL------PLERSTEYPAIISV--AQ 277 (380)
Q Consensus 208 ~~~~~~l~~~~~~~ad~ii~~S~~~~~~i~~~~~~~~k~~vi~~gvd~~~~~--~~------~~~~~~~~~~il~V--GR 277 (380)
..+...+.+|.+++.++++++.+.+. + .+..++-||+...... +. ...-.++++.|+.+ ||
T Consensus 131 ------~~r~l~~~~d~v~~~~~~e~~~~~~~-g--~~~~~vGnPv~~~~~~~~~~~~~~r~~lgl~~~~~~Ilvl~GSR 201 (385)
T TIGR00215 131 ------RAKKIEKATDFLLAILPFEKAFYQKK-N--VPCRFVGHPLLDAIPLYKPDRKSAREKLGIDHNGETLALLPGSR 201 (385)
T ss_pred ------hHHHHHHHHhHhhccCCCcHHHHHhc-C--CCEEEECCchhhhccccCCCHHHHHHHcCCCCCCCEEEEECCCC
Confidence 02334467899999999998887653 3 3556677776211110 10 01111245666655 38
Q ss_pred CCC-ccChHHHHHHHHHHHHHccCCCCCCeEEEEcCCCCCCCHHHHHHHHHHHHhcCCCCcEEEccCCCHHHHHHHHhhc
Q 016925 278 FRP-EKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRSVLTIFMHL 356 (380)
Q Consensus 278 l~p-~K~~d~li~A~~~l~~~~~~~~~~~~LvIvG~g~~~~~~~~~~~L~~la~~lgl~~~V~f~G~v~~~el~~ly~~a 356 (380)
..+ +|+++.+++|++.+.++. |++++++++... ...+.++++.++++...+|.+.+. +..++|+.|
T Consensus 202 ~aei~k~~~~ll~a~~~l~~~~----p~~~~vi~~~~~-----~~~~~~~~~~~~~~~~~~v~~~~~----~~~~~l~aA 268 (385)
T TIGR00215 202 GSEVEKLFPLFLKAAQLLEQQE----PDLRRVLPVVNF-----KRRLQFEQIKAEYGPDLQLHLIDG----DARKAMFAA 268 (385)
T ss_pred HHHHHHhHHHHHHHHHHHHHhC----CCeEEEEEeCCc-----hhHHHHHHHHHHhCCCCcEEEECc----hHHHHHHhC
Confidence 877 899999999999997764 899987766432 123566777777777778877653 456899999
Q ss_pred cEEEeec
Q 016925 357 FVFTMKW 363 (380)
Q Consensus 357 ~vf~~~~ 363 (380)
|+++.+.
T Consensus 269 Dl~V~~S 275 (385)
T TIGR00215 269 DAALLAS 275 (385)
T ss_pred CEEeecC
Confidence 9999864
No 92
>COG0438 RfaG Glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=98.90 E-value=8.5e-08 Score=89.88 Aligned_cols=141 Identities=21% Similarity=0.212 Sum_probs=109.4
Q ss_pred CCCEEEEcCHHHHHHHHHHhCCCCceEEecCCCCCCCCCCC--CCCCCCCCCEEEEEecCCCccChHHHHHHHHHHHHHc
Q 016925 221 CADLAMVNSSWTQSHIEKLWGIPDRIKRVYPPCDTSGLQVL--PLERSTEYPAIISVAQFRPEKAHPLQLEAFSVALRKL 298 (380)
Q Consensus 221 ~ad~ii~~S~~~~~~i~~~~~~~~k~~vi~~gvd~~~~~~~--~~~~~~~~~~il~VGRl~p~K~~d~li~A~~~l~~~~ 298 (380)
.++.+++.|......+...+. ..+..+++++++...+... .........+++++||+.+.||++.+++|+..+.+..
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~k~~~~~i~~~~~~~~~~ 228 (381)
T COG0438 150 LADRVIAVSPALKELLEALGV-PNKIVVIPNGIDTEKFAPARIGLLPEGGKFVVLYVGRLDPEKGLDLLIEAAAKLKKRG 228 (381)
T ss_pred cccEEEECCHHHHHHHHHhCC-CCCceEecCCcCHHHcCccccCCCcccCceEEEEeeccChhcCHHHHHHHHHHhhhhc
Confidence 478999999888666666543 2367788899988766542 2211111269999999999999999999999997653
Q ss_pred cCCCCCCeEEEEcCCCCCCCHHHHHHHHHHHHhcCCCCcEEEccCCCHHHHHHHHhhccEEEeech-hhHHHHH
Q 016925 299 DADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRSVLTIFMHLFVFTMKWQ-LVYDEFL 371 (380)
Q Consensus 299 ~~~~~~~~LvIvG~g~~~~~~~~~~~L~~la~~lgl~~~V~f~G~v~~~el~~ly~~a~vf~~~~~-~~~~~~~ 371 (380)
++.+++++|.+... .+.+.+++.+.+..++|.|.|.++++++..+++.|++++++.. |.||--+
T Consensus 229 ----~~~~~~~~g~~~~~-----~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~~~~v~ps~~e~~~~~~ 293 (381)
T COG0438 229 ----PDIKLVIVGDGPER-----REELEKLAKKLGLEDNVKFLGYVPDEELAELLASADVFVLPSLSEGFGLVL 293 (381)
T ss_pred ----CCeEEEEEcCCCcc-----HHHHHHHHHHhCCCCcEEEecccCHHHHHHHHHhCCEEEeccccccchHHH
Confidence 55899999987531 3466778888898999999999998899999999999999843 8888663
No 93
>TIGR03713 acc_sec_asp1 accessory Sec system protein Asp1. This protein is designated Asp1 because, along with SecY2, SecA2, and other proteins it is part of the accessory secretory protein system. The system is involved in the export of serine-rich glycoproteins important for virulence in a number of Gram-positive species, including Streptococcus gordonii and Staphylococcus aureus. This protein family is assigned to transport rather than glycosylation function, but the specific molecular role is unknown.
Probab=98.77 E-value=7.6e-08 Score=97.87 Aligned_cols=137 Identities=18% Similarity=0.155 Sum_probs=106.0
Q ss_pred cCCCEEEEcCHHHHHHHHHHhCCC---CceEEecCCCCCCCCCCCCCCCCCCCCEEEEEe--cCCCccChHHHHHHHHHH
Q 016925 220 SCADLAMVNSSWTQSHIEKLWGIP---DRIKRVYPPCDTSGLQVLPLERSTEYPAIISVA--QFRPEKAHPLQLEAFSVA 294 (380)
Q Consensus 220 ~~ad~ii~~S~~~~~~i~~~~~~~---~k~~vi~~gvd~~~~~~~~~~~~~~~~~il~VG--Rl~p~K~~d~li~A~~~l 294 (380)
..+|.+|+.++..++++++.++.. .++.+|+ +.++. .. .+... .....+++++ |+ |+|.++.+|+|+..+
T Consensus 271 ~~~d~iIv~T~~q~~~l~~~~~~~~~~~~v~~Ip-~~~~~-~~-~~~s~-r~~~~~I~v~idrL-~ek~~~~~I~av~~~ 345 (519)
T TIGR03713 271 SRADLIIVDREDIERLLEENYRENYVEFDISRIT-PFDTR-LR-LGQSQ-QLYETEIGFWIDGL-SDEELQQILQQLLQY 345 (519)
T ss_pred hhcCeEEEcCHHHHHHHHHHhhhcccCCcceeeC-ccceE-Ee-cChhh-cccceEEEEEcCCC-ChHHHHHHHHHHHHH
Confidence 468999998888888888777521 2344444 44442 21 11111 1346899999 99 999999999999999
Q ss_pred HHHccCCCCCCeEEEEcCCCCCCCHHHHHHHHHHHHhcCCC-----------------------------CcEEEccCCC
Q 016925 295 LRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVD-----------------------------GNVEFYKNLL 345 (380)
Q Consensus 295 ~~~~~~~~~~~~LvIvG~g~~~~~~~~~~~L~~la~~lgl~-----------------------------~~V~f~G~v~ 345 (380)
.+.+ |+++|.+.|.+.. .++.+.|++++++++++ ++|.|.|..+
T Consensus 346 ~~~~----p~~~L~~~gy~~~---~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~gy~~ 418 (519)
T TIGR03713 346 ILKN----PDYELKILTYNND---NDITQLLEDILEQINEEYNQDKNFFSLSEQDENQPILQTDEEQKEKERIAFTTLTN 418 (519)
T ss_pred HhhC----CCeEEEEEEecCc---hhHHHHHHHHHHHHHhhhchhhhccccchhhhhhhcccchhhcccccEEEEEecCC
Confidence 8876 9999999997632 34567888998998888 8999999998
Q ss_pred HHHHHHHHhhccEEEe-echhhHH
Q 016925 346 YRSVLTIFMHLFVFTM-KWQLVYD 368 (380)
Q Consensus 346 ~~el~~ly~~a~vf~~-~~~~~~~ 368 (380)
++++...|+.|.+++. +.+|.|+
T Consensus 419 e~dl~~~~~~arl~id~s~~eg~~ 442 (519)
T TIGR03713 419 EEDLISALDKLRLIIDLSKEPDLY 442 (519)
T ss_pred HHHHHHHHhhheEEEECCCCCChH
Confidence 8899999999999884 7799988
No 94
>PF09314 DUF1972: Domain of unknown function (DUF1972); InterPro: IPR015393 This domain is functionally uncharacterised and found in bacterial glycosyltransferases and rhamnosyltransferases.
Probab=98.71 E-value=2.3e-06 Score=74.89 Aligned_cols=173 Identities=16% Similarity=0.117 Sum_probs=98.3
Q ss_pred CcEEEEECCC-C-CCCCChhHHHHHHHHHHHHhCCCceEEEEcCCCCCChhhHHHHHHhhcCccccCCCeEEEecccccc
Q 016925 34 TTSVAFFHPN-T-NDGGGGERVLWCAVKAIQEESPDLDCIVYTGDHDAFPDSLLARAVDRFGVELLHPPKVVHLYRRKWI 111 (380)
Q Consensus 34 ~~~I~~~~p~-~-~~~GG~ervl~~la~~L~~~g~~~~v~v~t~~~~~~~~~~~~~~~~~~g~~l~~~v~~v~l~~~~~~ 111 (380)
+++|+++-.- . +..||.|+.+-+++..|+++| ++|+|++.....+.. ..+ | .+++.++++...
T Consensus 1 mkkIaIiGtrGIPa~YGGfET~ve~L~~~l~~~g--~~v~Vyc~~~~~~~~--~~~----y-----~gv~l~~i~~~~-- 65 (185)
T PF09314_consen 1 MKKIAIIGTRGIPARYGGFETFVEELAPRLVSKG--IDVTVYCRSDYYPYK--EFE----Y-----NGVRLVYIPAPK-- 65 (185)
T ss_pred CceEEEEeCCCCCcccCcHHHHHHHHHHHHhcCC--ceEEEEEccCCCCCC--Ccc----c-----CCeEEEEeCCCC--
Confidence 4678877422 1 335999999999999999988 667777654321110 000 1 234555554311
Q ss_pred ccCCCCccceehhhHhHHHHHHHHH---H--hcCCcEE-EeCCC-chhhHHHHh-H--hCCcEEEEEeCCcchhhHHHhh
Q 016925 112 EESTYPRFTMIGQSFGSVYLSWEAL---C--KFTPLYY-FDTSG-YAFTYPLAR-I--FGCRVICYTHYPTISLDMISRV 181 (380)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~l---~--~~~pDi~-~~~~~-~~~~~~l~~-~--~~~p~v~~~H~p~~~~~~~~~~ 181 (380)
........-.+.-...++ + +.+.|++ +...+ -++..|+.+ + .+.|++...|+.+..
T Consensus 66 -------~g~~~si~yd~~sl~~al~~~~~~~~~~~ii~ilg~~~g~~~~~~~r~~~~~g~~v~vN~DGlEWk------- 131 (185)
T PF09314_consen 66 -------NGSAESIIYDFLSLLHALRFIKQDKIKYDIILILGYGIGPFFLPFLRKLRKKGGKVVVNMDGLEWK------- 131 (185)
T ss_pred -------CCchHHHHHHHHHHHHHHHHHhhccccCCEEEEEcCCccHHHHHHHHhhhhcCCcEEECCCcchhh-------
Confidence 111111111111112222 2 1245653 33333 234455543 2 356888877765531
Q ss_pred hccccccCCCccccccchhhhhHHHHHHHHHHHHHHHhcCCCEEEEcCHHHHHHHHHHhCCCCceEEecCCCC
Q 016925 182 REGSSMYNNNASIAQSNWLSQCKIVYYTFFSWMYGLVGSCADLAMVNSSWTQSHIEKLWGIPDRIKRVYPPCD 254 (380)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ad~ii~~S~~~~~~i~~~~~~~~k~~vi~~gvd 254 (380)
+.+|.... .+.+..-|+...+.||.+|+.|+..++.+++.|+ ..++++|..|.|
T Consensus 132 --------------R~KW~~~~----k~~lk~~E~~avk~ad~lIaDs~~I~~y~~~~y~-~~~s~~IaYGad 185 (185)
T PF09314_consen 132 --------------RAKWGRPA----KKYLKFSEKLAVKYADRLIADSKGIQDYIKERYG-RKKSTFIAYGAD 185 (185)
T ss_pred --------------hhhcCHHH----HHHHHHHHHHHHHhCCEEEEcCHHHHHHHHHHcC-CCCcEEecCCCC
Confidence 22222222 2344556788889999999999999999999997 346788888875
No 95
>PF13692 Glyco_trans_1_4: Glycosyl transferases group 1; PDB: 3OY2_A 3OY7_B 2Q6V_A 2HY7_A 3CV3_A 3CUY_A.
Probab=98.48 E-value=2.1e-07 Score=77.13 Aligned_cols=76 Identities=22% Similarity=0.187 Sum_probs=57.9
Q ss_pred CEEEEEecCCCccChHHHHH-HHHHHHHHccCCCCCCeEEEEcCCCCCCCHHHHHHHHHHHHhcCCCCcEEEccCCCHHH
Q 016925 270 PAIISVAQFRPEKAHPLQLE-AFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRS 348 (380)
Q Consensus 270 ~~il~VGRl~p~K~~d~li~-A~~~l~~~~~~~~~~~~LvIvG~g~~~~~~~~~~~L~~la~~lgl~~~V~f~G~v~~~e 348 (380)
.+++++|++.+.|+++.+++ |+.++.+++ |+++|.|+|.++. +++++ ..++|+|.|.+ +|
T Consensus 3 ~~i~~~g~~~~~k~~~~li~~~~~~l~~~~----p~~~l~i~G~~~~--------~l~~~-----~~~~v~~~g~~--~e 63 (135)
T PF13692_consen 3 LYIGYLGRIRPDKGLEELIEAALERLKEKH----PDIELIIIGNGPD--------ELKRL-----RRPNVRFHGFV--EE 63 (135)
T ss_dssp EEEE--S-SSGGGTHHHHHH-HHHHHHHHS----TTEEEEEECESS---------HHCCH-----HHCTEEEE-S---HH
T ss_pred ccccccccccccccccchhhhHHHHHHHHC----cCEEEEEEeCCHH--------HHHHh-----cCCCEEEcCCH--HH
Confidence 68999999999999999999 999998876 8999999998641 24444 23589999999 48
Q ss_pred HHHHHhhccEEEeech
Q 016925 349 VLTIFMHLFVFTMKWQ 364 (380)
Q Consensus 349 l~~ly~~a~vf~~~~~ 364 (380)
+.++|++||+.+.++.
T Consensus 64 ~~~~l~~~dv~l~p~~ 79 (135)
T PF13692_consen 64 LPEILAAADVGLIPSR 79 (135)
T ss_dssp HHHHHHC-SEEEE-BS
T ss_pred HHHHHHhCCEEEEEee
Confidence 9999999999998763
No 96
>TIGR02094 more_P_ylases alpha-glucan phosphorylases. This family consists of known phosphorylases, and homologs believed to share the function of using inorganic phosphate to cleave an alpha 1,4 linkage between the terminal glucose residue and the rest of the polymer (maltodextrin, glycogen, etc.). The name of the glucose storage polymer substrate, and therefore the name of this enzyme, depends on the chain lengths and branching patterns. A number of the members of this family have been shown to operate on small maltodextrins, as may be obtained by utilization of exogenous sources. This family represents a distinct clade from the related family modeled by TIGR02093/PF00343.
Probab=98.45 E-value=1.1e-05 Score=83.36 Aligned_cols=101 Identities=15% Similarity=0.108 Sum_probs=77.0
Q ss_pred CCCEEEEEecCCCccChHHHHHHHHHHHHHccCCCCCCeEEEEcCCCCC--CCHHHHHHHHHHHHhcCCCCcEEEccCCC
Q 016925 268 EYPAIISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNK--SDEERLQSLKDKSIELKVDGNVEFYKNLL 345 (380)
Q Consensus 268 ~~~~il~VGRl~p~K~~d~li~A~~~l~~~~~~~~~~~~LvIvG~g~~~--~~~~~~~~L~~la~~lgl~~~V~f~G~v~ 345 (380)
+.+++++|+|+..+||.+++++++..+.+-......++.++++|.+... ..+++.+.+.+++++...+++|.|.-.-+
T Consensus 388 d~~~ig~v~Rl~~yKr~dLil~~i~~l~~i~~~~~~pvq~V~~Gka~p~d~~gk~~i~~i~~la~~~~~~~kv~f~~~Yd 467 (601)
T TIGR02094 388 DVLTIGFARRFATYKRADLIFRDLERLARILNNPERPVQIVFAGKAHPADGEGKEIIQRIVEFSKRPEFRGRIVFLENYD 467 (601)
T ss_pred CCcEEEEEEcchhhhhHHHHHHHHHHHHHHhhCCCCCeEEEEEEecCcccchHHHHHHHHHHHHhcccCCCCEEEEcCCC
Confidence 3468999999999999999999999886421000136899999987311 12446678888888777888999988777
Q ss_pred HHHHHHHHhhccEEEe-ec--hhhHH
Q 016925 346 YRSVLTIFMHLFVFTM-KW--QLVYD 368 (380)
Q Consensus 346 ~~el~~ly~~a~vf~~-~~--~~~~~ 368 (380)
.+--..+++.||+++| |. .|..|
T Consensus 468 ~~lA~~i~aG~Dv~L~~Psr~~EacG 493 (601)
T TIGR02094 468 INLARYLVSGVDVWLNNPRRPLEASG 493 (601)
T ss_pred HHHHHHHhhhheeEEeCCCCCcCCch
Confidence 6667799999999999 55 67776
No 97
>PLN03064 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=98.33 E-value=1.8e-05 Score=84.96 Aligned_cols=127 Identities=10% Similarity=0.070 Sum_probs=83.6
Q ss_pred ceEEecCCCCCCCCCCC-CCC-----------CCCCCCEEEEEecCCCccChHHHHHHHHHHHHHccCCCCCCe--EEEE
Q 016925 245 RIKRVYPPCDTSGLQVL-PLE-----------RSTEYPAIISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPR--LQFV 310 (380)
Q Consensus 245 k~~vi~~gvd~~~~~~~-~~~-----------~~~~~~~il~VGRl~p~K~~d~li~A~~~l~~~~~~~~~~~~--LvIv 310 (380)
++.+.+.|||++.|... ... .-.++.+|+.|+|+++.||+...++||+.+.+++ |+++ ++++
T Consensus 327 ~V~~~PiGID~~~f~~~~~~~~v~~~~~~lr~~~~g~kiIlgVDRLD~~KGI~~kL~AfE~fL~~~----Pe~r~kVVLv 402 (934)
T PLN03064 327 RVAAFPIGIDSDRFIRALETPQVQQHIKELKERFAGRKVMLGVDRLDMIKGIPQKILAFEKFLEEN----PEWRDKVVLL 402 (934)
T ss_pred EEEEEeCEEcHHHHHHHhcChhHHHHHHHHHHHhCCceEEEEeeccccccCHHHHHHHHHHHHHhC----ccccCCEEEE
Confidence 35566778998776531 110 0124679999999999999999999999988876 6664 4444
Q ss_pred --cCCCC---CCCHHHHHHHHHHHHhcC----CC--CcEEE-ccCCCHHHHHHHHhhccEEEe-echhhHHHHHHHHH
Q 016925 311 --GSCRN---KSDEERLQSLKDKSIELK----VD--GNVEF-YKNLLYRSVLTIFMHLFVFTM-KWQLVYDEFLKLYL 375 (380)
Q Consensus 311 --G~g~~---~~~~~~~~~L~~la~~lg----l~--~~V~f-~G~v~~~el~~ly~~a~vf~~-~~~~~~~~~~~~~~ 375 (380)
.-+.. +...++..++.+++.+.+ -. ..|++ ...++.+++..+|+.||+|+. +.+|.|+--.+-|.
T Consensus 403 QIa~psr~~v~eY~~l~~~V~~~V~rIN~~fg~~~w~Pv~~~~~~l~~eeL~AlY~~ADV~lvTslrDGmNLva~Eyv 480 (934)
T PLN03064 403 QIAVPTRTDVPEYQKLTSQVHEIVGRINGRFGTLTAVPIHHLDRSLDFHALCALYAVTDVALVTSLRDGMNLVSYEFV 480 (934)
T ss_pred EEcCCCCCCcHHHHHHHHHHHHHHHHHhhhccCCCcceEEEeccCCCHHHHHHHHHhCCEEEeCccccccCchHHHHH
Confidence 32211 112223334555544433 11 12443 345899999999999999886 88999986666654
No 98
>KOG2941 consensus Beta-1,4-mannosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.30 E-value=0.00056 Score=64.46 Aligned_cols=287 Identities=16% Similarity=0.211 Sum_probs=159.7
Q ss_pred CCCCcEEEEECCCCCCCCChhHHHHHHHHHHHHhCCCceEEEEcCCCCCChhhHHHHHHhhcCccccCCCeEEEeccccc
Q 016925 31 RNRTTSVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYTGDHDAFPDSLLARAVDRFGVELLHPPKVVHLYRRKW 110 (380)
Q Consensus 31 ~~~~~~I~~~~p~~~~~GG~ervl~~la~~L~~~g~~~~v~v~t~~~~~~~~~~~~~~~~~~g~~l~~~v~~v~l~~~~~ 110 (380)
+..+++++++.= ++.|-.-|+.+. |..|++.|.+++..-|... .+-+++.+ .++++++.+..-+.
T Consensus 9 ~~~k~ra~vvVL--GDvGRSPRMqYH-A~Sla~~gf~VdliGy~~s--~p~e~l~~----------hprI~ih~m~~l~~ 73 (444)
T KOG2941|consen 9 KSKKKRAIVVVL--GDVGRSPRMQYH-ALSLAKLGFQVDLIGYVES--IPLEELLN----------HPRIRIHGMPNLPF 73 (444)
T ss_pred ccccceEEEEEe--cccCCChHHHHH-HHHHHHcCCeEEEEEecCC--CChHHHhc----------CCceEEEeCCCCcc
Confidence 344455554432 334677777755 5678888855554444332 22233322 13345555433111
Q ss_pred cccCCCCcc-ceehhhHhHH-HHHHHHHHhcCCcEE-E-eCCCchhhHHHH----hHhCCcEEEEEeCCcchhhHHHhhh
Q 016925 111 IEESTYPRF-TMIGQSFGSV-YLSWEALCKFTPLYY-F-DTSGYAFTYPLA----RIFGCRVICYTHYPTISLDMISRVR 182 (380)
Q Consensus 111 ~~~~~~~~~-~~~~~~~~~~-~~~~~~l~~~~pDi~-~-~~~~~~~~~~l~----~~~~~p~v~~~H~p~~~~~~~~~~~ 182 (380)
.. ..|++ .+..+.+-.+ .+.|..+-...+|++ + +..+.+ +++++ ..++++.+..-|.--.+ .+..++
T Consensus 74 ~~--~~p~~~~l~lKvf~Qfl~Ll~aL~~~~~~~~ilvQNPP~iP-tliv~~~~~~l~~~KfiIDWHNy~Ys--l~l~~~ 148 (444)
T KOG2941|consen 74 LQ--GGPRVLFLPLKVFWQFLSLLWALFVLRPPDIILVQNPPSIP-TLIVCVLYSILTGAKFIIDWHNYGYS--LQLKLK 148 (444)
T ss_pred cC--CCchhhhhHHHHHHHHHHHHHHHHhccCCcEEEEeCCCCCc-hHHHHHHHHHHhcceEEEEehhhHHH--HHHHhh
Confidence 11 11211 1111111111 122434445667854 3 344433 22222 34688888877732211 111111
Q ss_pred ccccccCCCccccccchhhhhHHHHHHHHHHHHHHHhcCCCEEEEcCHHHHHHHHHHhCCCCceEEecC--C---CCCCC
Q 016925 183 EGSSMYNNNASIAQSNWLSQCKIVYYTFFSWMYGLVGSCADLAMVNSSWTQSHIEKLWGIPDRIKRVYP--P---CDTSG 257 (380)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ad~ii~~S~~~~~~i~~~~~~~~k~~vi~~--g---vd~~~ 257 (380)
.. + .+ . +-++.++.|++.++.||.-+|+++.+++++.+.|+.. +..|+|- | .+.+.
T Consensus 149 ~g---~-------~h---~-----lV~l~~~~E~~fgk~a~~nLcVT~AMr~dL~qnWgi~-ra~v~YDrPps~~~~l~~ 209 (444)
T KOG2941|consen 149 LG---F-------QH---P-----LVRLVRWLEKYFGKLADYNLCVTKAMREDLIQNWGIN-RAKVLYDRPPSKPTPLDE 209 (444)
T ss_pred cC---C-------CC---c-----hHHHHHHHHHHhhcccccchhhHHHHHHHHHHhcCCc-eeEEEecCCCCCCCchhH
Confidence 10 0 01 1 1235567889999999999999999999999999852 5667773 2 11110
Q ss_pred ----CCCCC----------CCC-------------------CCCCC-EEEEEecCCCccChHHHHHHHH-----HHHHHc
Q 016925 258 ----LQVLP----------LER-------------------STEYP-AIISVAQFRPEKAHPLQLEAFS-----VALRKL 298 (380)
Q Consensus 258 ----~~~~~----------~~~-------------------~~~~~-~il~VGRl~p~K~~d~li~A~~-----~l~~~~ 298 (380)
|.+.. .+. ..+.| .+++=--.+|..++..|++|+. ...+.+
T Consensus 210 ~H~lf~~l~~d~~~f~ar~~q~~~~~~taf~~k~~s~~v~~~~~~pallvsSTswTpDEdf~ILL~AL~~y~~~~~~~~~ 289 (444)
T KOG2941|consen 210 QHELFMKLAGDHSPFRAREPQDKALERTAFTKKDASGDVQLLPERPALLVSSTSWTPDEDFGILLEALVIYEEQLYDKTH 289 (444)
T ss_pred HHHHHhhhccccchhhhcccccchhhhhhHhhhcccchhhhccCCCeEEEecCCCCCcccHHHHHHHHHhhhhhhhhccC
Confidence 11100 000 01233 4555567899999999999998 344444
Q ss_pred cCCCCCCeEEEEcCCCCCCCHHHHHHHHHHHHhcCCCCcEEE-ccCCCHHHHHHHHhhccEEEeechh
Q 016925 299 DADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEF-YKNLLYRSVLTIFMHLFVFTMKWQL 365 (380)
Q Consensus 299 ~~~~~~~~LvIvG~g~~~~~~~~~~~L~~la~~lgl~~~V~f-~G~v~~~el~~ly~~a~vf~~~~~~ 365 (380)
..|..-.+|.|.|+. .|...++++++++. +|.+ +....-||-+.+++.||..|..+.-
T Consensus 290 --~lP~llciITGKGPl------kE~Y~~~I~~~~~~-~v~~~tpWL~aEDYP~ll~saDlGVcLHtS 348 (444)
T KOG2941|consen 290 --NLPSLLCIITGKGPL------KEKYSQEIHEKNLQ-HVQVCTPWLEAEDYPKLLASADLGVCLHTS 348 (444)
T ss_pred --CCCcEEEEEcCCCch------hHHHHHHHHHhccc-ceeeeecccccccchhHhhccccceEeeec
Confidence 468888888998754 35567778888886 4554 6677888999999999997765433
No 99
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=98.26 E-value=0.0003 Score=68.35 Aligned_cols=244 Identities=14% Similarity=0.119 Sum_probs=125.9
Q ss_pred CCChhHHHHHHHHHHHHhCCCceEEEEcCCCCCChhhHHHHHHhhcCccccCCCeEEEeccccccccCCCCccceehhhH
Q 016925 47 GGGGERVLWCAVKAIQEESPDLDCIVYTGDHDAFPDSLLARAVDRFGVELLHPPKVVHLYRRKWIEESTYPRFTMIGQSF 126 (380)
Q Consensus 47 ~GG~ervl~~la~~L~~~g~~~~v~v~t~~~~~~~~~~~~~~~~~~g~~l~~~v~~v~l~~~~~~~~~~~~~~~~~~~~~ 126 (380)
+||--.....++.+|+++|++ +|.+....... ++.. ....+ .++..++...+.....+.......+.+
T Consensus 10 TGGHv~pAlAl~~~l~~~g~~-~v~~~~~~~~~--e~~l---~~~~~------~~~~~I~~~~~~~~~~~~~~~~~~~~~ 77 (357)
T COG0707 10 TGGHVFPALALAEELAKRGWE-QVIVLGTGDGL--EAFL---VKQYG------IEFELIPSGGLRRKGSLKLLKAPFKLL 77 (357)
T ss_pred CccchhHHHHHHHHHHhhCcc-EEEEecccccc--eeee---ccccC------ceEEEEecccccccCcHHHHHHHHHHH
Confidence 467777789999999999966 66555322211 1110 01112 233334332221111111111112223
Q ss_pred hHHHHHHHHHHhcCCcEEEeCCCchhhHH-H-HhHhCCcEEEEEeCCcchhhHHHhhhccccccCCCccccccchhhhhH
Q 016925 127 GSVYLSWEALCKFTPLYYFDTSGYAFTYP-L-ARIFGCRVICYTHYPTISLDMISRVREGSSMYNNNASIAQSNWLSQCK 204 (380)
Q Consensus 127 ~~~~~~~~~l~~~~pDi~~~~~~~~~~~~-l-~~~~~~p~v~~~H~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (380)
.....+.+.+++++||+++++.++...-+ + ++..++|++. |..+. .+.
T Consensus 78 ~~~~~a~~il~~~kPd~vig~Ggyvs~P~~~Aa~~~~iPv~i--hEqn~--------------------~~G-------- 127 (357)
T COG0707 78 KGVLQARKILKKLKPDVVIGTGGYVSGPVGIAAKLLGIPVII--HEQNA--------------------VPG-------- 127 (357)
T ss_pred HHHHHHHHHHHHcCCCEEEecCCccccHHHHHHHhCCCCEEE--EecCC--------------------Ccc--------
Confidence 33334456689999999998888763333 3 3456788874 42221 001
Q ss_pred HHHHHHHHHHHHHHhcCCCEEEEcCHHHHHHHHHHhCCCCceEEecCCCCCCCCC-CCC---CCCCCCCCEEEEEecCCC
Q 016925 205 IVYYTFFSWMYGLVGSCADLAMVNSSWTQSHIEKLWGIPDRIKRVYPPCDTSGLQ-VLP---LERSTEYPAIISVAQFRP 280 (380)
Q Consensus 205 ~~~~~~~~~l~~~~~~~ad~ii~~S~~~~~~i~~~~~~~~k~~vi~~gvd~~~~~-~~~---~~~~~~~~~il~VGRl~p 280 (380)
..| ++..+.|+.|.+.- .+ ... +..+++..++=+|+..+.+. +.. .....++++|+.+|-=.-
T Consensus 128 -~an-------k~~~~~a~~V~~~f--~~--~~~-~~~~~~~~~tG~Pvr~~~~~~~~~~~~~~~~~~~~~ilV~GGS~G 194 (357)
T COG0707 128 -LAN-------KILSKFAKKVASAF--PK--LEA-GVKPENVVVTGIPVRPEFEELPAAEVRKDGRLDKKTILVTGGSQG 194 (357)
T ss_pred -hhH-------HHhHHhhceeeecc--cc--ccc-cCCCCceEEecCcccHHhhccchhhhhhhccCCCcEEEEECCcch
Confidence 011 23335667777542 22 122 22234677777888654333 111 111124678887774443
Q ss_pred ccChHHHHHHHHHHHHHccCCCCCCeEEEEcCCCCCCCHHHHHHHHHHHHhcCCCCcEEEccCCCHHHHHHHHhhccEEE
Q 016925 281 EKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRSVLTIFMHLFVFT 360 (380)
Q Consensus 281 ~K~~d~li~A~~~l~~~~~~~~~~~~LvIvG~g~~~~~~~~~~~L~~la~~lgl~~~V~f~G~v~~~el~~ly~~a~vf~ 360 (380)
-+.+..++........ .++.++...+. .. .+++++.-.+++. +...++.+ +++++|+.||+.+
T Consensus 195 a~~ln~~v~~~~~~l~------~~~~v~~~~G~-----~~-~~~~~~~~~~~~~---~~v~~f~~--dm~~~~~~ADLvI 257 (357)
T COG0707 195 AKALNDLVPEALAKLA------NRIQVIHQTGK-----ND-LEELKSAYNELGV---VRVLPFID--DMAALLAAADLVI 257 (357)
T ss_pred hHHHHHHHHHHHHHhh------hCeEEEEEcCc-----ch-HHHHHHHHhhcCc---EEEeeHHh--hHHHHHHhccEEE
Confidence 3334444433332211 24565544431 11 4566666666666 88888865 7999999999987
Q ss_pred ee
Q 016925 361 MK 362 (380)
Q Consensus 361 ~~ 362 (380)
..
T Consensus 258 sR 259 (357)
T COG0707 258 SR 259 (357)
T ss_pred eC
Confidence 63
No 100
>TIGR03492 conserved hypothetical protein. This protein family is restricted to the Cyanobacteria, in one or two copies, save for instances in the genus Deinococcus. This protein shows some sequence similarity, especially toward the C-terminus, to lipid-A-disaccharide synthase (TIGR00215 or pfam02684). The function is unknown.
Probab=98.18 E-value=0.00019 Score=71.03 Aligned_cols=276 Identities=13% Similarity=0.044 Sum_probs=141.2
Q ss_pred CCCCChhHHHHHHHHHHHHhCCCceEE---EEcCCCCCChhhHHHHHHhhcCccccCCCeEEEeccccccccCCCCccce
Q 016925 45 NDGGGGERVLWCAVKAIQEESPDLDCI---VYTGDHDAFPDSLLARAVDRFGVELLHPPKVVHLYRRKWIEESTYPRFTM 121 (380)
Q Consensus 45 ~~~GG~ervl~~la~~L~~~g~~~~v~---v~t~~~~~~~~~~~~~~~~~~g~~l~~~v~~v~l~~~~~~~~~~~~~~~~ 121 (380)
.+|-|-+.....++++|+++.++++|. .+..... +.+. .++.-.. +..++...+...+....+..
T Consensus 4 snghged~~a~ai~~~l~~~~~~~~v~~~p~vG~~~~-----~e~~-----~ip~~g~--~~~~~sgg~~~~~~~~~~~~ 71 (396)
T TIGR03492 4 SNGHGEDLIAARIAKALLQLSPDLNLEALPLVGEGRA-----YQNL-----GIPIIGP--TKELPSGGFSYQSLRGLLRD 71 (396)
T ss_pred CCCchHHHHHHHHHHHHHhhCCCCCeEEeCcccCCHH-----HhhC-----CCceeCC--CCCCCCCCccCCCHHHHHHH
Confidence 456788899999999999865557766 3322211 1010 2221111 12222111100000011111
Q ss_pred ehh-hHhHHHHHHHHHHhc--CCcEEEeCCCchhhHHHHhHhCCcEEEE-EeCCcchhhHHHhhhccccccCCCcccccc
Q 016925 122 IGQ-SFGSVYLSWEALCKF--TPLYYFDTSGYAFTYPLARIFGCRVICY-THYPTISLDMISRVREGSSMYNNNASIAQS 197 (380)
Q Consensus 122 ~~~-~~~~~~~~~~~l~~~--~pDi~~~~~~~~~~~~l~~~~~~p~v~~-~H~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (380)
..+ .+...+..+..++++ +||+++...++. ....++..++|.+++ +|..+... .+.+..+..
T Consensus 72 ~~~gl~~~~~~~~~~~~~~~~~p~~v~~~Gg~v-~~~aA~~~~~p~~~~~~~esn~~~-------------~~~~~~~~~ 137 (396)
T TIGR03492 72 LRAGLVGLTLGQWRALRKWAKKGDLIVAVGDIV-PLLFAWLSGKPYAFVGTAKSDYYW-------------ESGPRRSPS 137 (396)
T ss_pred HHhhHHHHHHHHHHHHHHHhhcCCEEEEECcHH-HHHHHHHcCCCceEEEeeccceee-------------cCCCCCccc
Confidence 222 333344556778888 999988887765 122467788998763 46333210 000000000
Q ss_pred -chhhhhHHHHHHHHHHHHHHHhcCCCEEEEcCHHHHHHHHHHhCCCCceEEecCCCCCCCCCCCCCCCCCCCCEEEEEe
Q 016925 198 -NWLSQCKIVYYTFFSWMYGLVGSCADLAMVNSSWTQSHIEKLWGIPDRIKRVYPPCDTSGLQVLPLERSTEYPAIISVA 276 (380)
Q Consensus 198 -~~~~~~~~~~~~~~~~l~~~~~~~ad~ii~~S~~~~~~i~~~~~~~~k~~vi~~gvd~~~~~~~~~~~~~~~~~il~VG 276 (380)
.+..+.+..+..+ . ..+...+.||.+.+..+.+++.+.+. + .++.++=||+-............++.+.++.++
T Consensus 138 ~~~~~~~G~~~~p~-e-~n~l~~~~a~~v~~~~~~t~~~l~~~-g--~k~~~vGnPv~d~l~~~~~~~l~~~~~~lllLp 212 (396)
T TIGR03492 138 DEYHRLEGSLYLPW-E-RWLMRSRRCLAVFVRDRLTARDLRRQ-G--VRASYLGNPMMDGLEPPERKPLLTGRFRIALLP 212 (396)
T ss_pred hhhhccCCCccCHH-H-HHHhhchhhCEEeCCCHHHHHHHHHC-C--CeEEEeCcCHHhcCccccccccCCCCCEEEEEC
Confidence 0011111111111 1 13455678999999999998888763 3 256666666521111111001112334554444
Q ss_pred --c-CCCccChHHHHHHHHHHHHHccCCCCCCeEEEEcCCCCCCCHHHHHHHHHHHHhcCCCC--------------cEE
Q 016925 277 --Q-FRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDG--------------NVE 339 (380)
Q Consensus 277 --R-l~p~K~~d~li~A~~~l~~~~~~~~~~~~LvIvG~g~~~~~~~~~~~L~~la~~lgl~~--------------~V~ 339 (380)
| =+-.+++..+++|+..+.++ +++.+++.=.+. . ..+++++..++.|+.. ++.
T Consensus 213 GSR~ae~~~~lp~~l~al~~L~~~-----~~~~~v~~~~~~--~---~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~ 282 (396)
T TIGR03492 213 GSRPPEAYRNLKLLLRALEALPDS-----QPFVFLAAIVPS--L---SLEKLQAILEDLGWQLEGSSEDQTSLFQKGTLE 282 (396)
T ss_pred CCCHHHHHccHHHHHHHHHHHhhC-----CCeEEEEEeCCC--C---CHHHHHHHHHhcCceecCCccccchhhccCceE
Confidence 3 22356778999999998542 567765543111 1 1356777776666542 366
Q ss_pred EccCCCHHHHHHHHhhccEEEeec
Q 016925 340 FYKNLLYRSVLTIFMHLFVFTMKW 363 (380)
Q Consensus 340 f~G~v~~~el~~ly~~a~vf~~~~ 363 (380)
+..+ ..++.++|+.||+.+...
T Consensus 283 v~~~--~~~~~~~l~~ADlvI~rS 304 (396)
T TIGR03492 283 VLLG--RGAFAEILHWADLGIAMA 304 (396)
T ss_pred EEec--hHhHHHHHHhCCEEEECc
Confidence 6555 347899999999988643
No 101
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=98.17 E-value=0.00042 Score=67.47 Aligned_cols=237 Identities=12% Similarity=0.054 Sum_probs=116.7
Q ss_pred CChhHHHHHHHHHHHHhCCCceEEEEcCCCCCChhhHHHHHHhhcCccccCCCeEEEeccccccccCCCCccceehhhHh
Q 016925 48 GGGERVLWCAVKAIQEESPDLDCIVYTGDHDAFPDSLLARAVDRFGVELLHPPKVVHLYRRKWIEESTYPRFTMIGQSFG 127 (380)
Q Consensus 48 GG~ervl~~la~~L~~~g~~~~v~v~t~~~~~~~~~~~~~~~~~~g~~l~~~v~~v~l~~~~~~~~~~~~~~~~~~~~~~ 127 (380)
||-=-=.+.+++.|.++| |+|..++...+.. .++.+ .+|+ .+..++...+.....+..+....+.+.
T Consensus 12 GGHi~Pala~a~~l~~~g--~~v~~vg~~~~~e-~~l~~----~~g~------~~~~~~~~~l~~~~~~~~~~~~~~~~~ 78 (352)
T PRK12446 12 AGHVTPNLAIIPYLKEDN--WDISYIGSHQGIE-KTIIE----KENI------PYYSISSGKLRRYFDLKNIKDPFLVMK 78 (352)
T ss_pred HHHHHHHHHHHHHHHhCC--CEEEEEECCCccc-cccCc----ccCC------cEEEEeccCcCCCchHHHHHHHHHHHH
Confidence 454444889999999877 7887776554321 11111 1233 333333211100001111111122222
Q ss_pred HHHHHHHHHHhcCCcEEEeCCCchhhHH---HHhHhCCcEEEEEeCCcchhhHHHhhhccccccCCCccccccchhhhhH
Q 016925 128 SVYLSWEALCKFTPLYYFDTSGYAFTYP---LARIFGCRVICYTHYPTISLDMISRVREGSSMYNNNASIAQSNWLSQCK 204 (380)
Q Consensus 128 ~~~~~~~~l~~~~pDi~~~~~~~~~~~~---l~~~~~~p~v~~~H~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (380)
..+.+.+.+++++||+++.+.++.. .| .++..++|++. |..... .+.
T Consensus 79 ~~~~~~~i~~~~kPdvvi~~Ggy~s-~p~~~aa~~~~~p~~i--~e~n~~-------------------------~g~-- 128 (352)
T PRK12446 79 GVMDAYVRIRKLKPDVIFSKGGFVS-VPVVIGGWLNRVPVLL--HESDMT-------------------------PGL-- 128 (352)
T ss_pred HHHHHHHHHHhcCCCEEEecCchhh-HHHHHHHHHcCCCEEE--ECCCCC-------------------------ccH--
Confidence 3344556789999999888777653 34 24567899864 422210 010
Q ss_pred HHHHHHHHHHHHHHhcCCCEEEEcCHHHHHHHHHHhCCCCceEEecCCCCCCCCCCCC------CCCCCCCCEEEEEecC
Q 016925 205 IVYYTFFSWMYGLVGSCADLAMVNSSWTQSHIEKLWGIPDRIKRVYPPCDTSGLQVLP------LERSTEYPAIISVAQF 278 (380)
Q Consensus 205 ~~~~~~~~~l~~~~~~~ad~ii~~S~~~~~~i~~~~~~~~k~~vi~~gvd~~~~~~~~------~~~~~~~~~il~VGRl 278 (380)
..+...+.+|.+.+.=+. ..+.++ ++++.++=||+..+...... ..-.++++.|+.+|-=
T Consensus 129 ---------~nr~~~~~a~~v~~~f~~----~~~~~~-~~k~~~tG~Pvr~~~~~~~~~~~~~~~~l~~~~~~iLv~GGS 194 (352)
T PRK12446 129 ---------ANKIALRFASKIFVTFEE----AAKHLP-KEKVIYTGSPVREEVLKGNREKGLAFLGFSRKKPVITIMGGS 194 (352)
T ss_pred ---------HHHHHHHhhCEEEEEccc----hhhhCC-CCCeEEECCcCCcccccccchHHHHhcCCCCCCcEEEEECCc
Confidence 113345678888764321 123333 35677777777643222110 0111245677777654
Q ss_pred CCccChHH-HHHHHHHHHHHccCCCCCCeEEE-EcCCCCCCCHHHHHHHHHHHHhcCCCCcEEEccCCCHHHHHHHHhhc
Q 016925 279 RPEKAHPL-QLEAFSVALRKLDADLPRPRLQF-VGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRSVLTIFMHL 356 (380)
Q Consensus 279 ~p~K~~d~-li~A~~~l~~~~~~~~~~~~LvI-vG~g~~~~~~~~~~~L~~la~~lgl~~~V~f~G~v~~~el~~ly~~a 356 (380)
.-.+.+.. +.+++..+. .+++++. .|.. ++.+.+.+ . +++...+++ .++++++|+.|
T Consensus 195 ~Ga~~in~~~~~~l~~l~-------~~~~vv~~~G~~------~~~~~~~~----~---~~~~~~~f~-~~~m~~~~~~a 253 (352)
T PRK12446 195 LGAKKINETVREALPELL-------LKYQIVHLCGKG------NLDDSLQN----K---EGYRQFEYV-HGELPDILAIT 253 (352)
T ss_pred cchHHHHHHHHHHHHhhc-------cCcEEEEEeCCc------hHHHHHhh----c---CCcEEecch-hhhHHHHHHhC
Confidence 44455533 333344331 3466544 4531 11122221 1 133445665 24799999999
Q ss_pred cEEEee
Q 016925 357 FVFTMK 362 (380)
Q Consensus 357 ~vf~~~ 362 (380)
|+++..
T Consensus 254 dlvIsr 259 (352)
T PRK12446 254 DFVISR 259 (352)
T ss_pred CEEEEC
Confidence 998764
No 102
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=98.08 E-value=0.00054 Score=65.29 Aligned_cols=73 Identities=12% Similarity=0.049 Sum_probs=50.8
Q ss_pred CCCEEEEEecCCCccChHHHHHHHHHHHHHccCCCCCCeEEEEcCCCCCCCHHHHHHHHHHHHhcCCCCcEEEccCCCHH
Q 016925 268 EYPAIISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYR 347 (380)
Q Consensus 268 ~~~~il~VGRl~p~K~~d~li~A~~~l~~~~~~~~~~~~LvIvG~g~~~~~~~~~~~L~~la~~lgl~~~V~f~G~v~~~ 347 (380)
++.+++++|..... .++++++.+ ++..++++|.... + ...++|.+.++. ..
T Consensus 192 ~~~iLv~~gg~~~~----~~~~~l~~~--------~~~~~~v~g~~~~--------~--------~~~~ni~~~~~~-~~ 242 (318)
T PF13528_consen 192 EPKILVYFGGGGPG----DLIEALKAL--------PDYQFIVFGPNAA--------D--------PRPGNIHVRPFS-TP 242 (318)
T ss_pred CCEEEEEeCCCcHH----HHHHHHHhC--------CCCeEEEEcCCcc--------c--------ccCCCEEEeecC-hH
Confidence 35689999998877 556666543 7899999986410 0 016789988864 36
Q ss_pred HHHHHHhhccEEEe-echhhHHH
Q 016925 348 SVLTIFMHLFVFTM-KWQLVYDE 369 (380)
Q Consensus 348 el~~ly~~a~vf~~-~~~~~~~~ 369 (380)
++.++++.||+.+. ..+.-..|
T Consensus 243 ~~~~~m~~ad~vIs~~G~~t~~E 265 (318)
T PF13528_consen 243 DFAELMAAADLVISKGGYTTISE 265 (318)
T ss_pred HHHHHHHhCCEEEECCCHHHHHH
Confidence 89999999999885 33333444
No 103
>cd04299 GT1_Glycogen_Phosphorylase_like This family is most closely related to the oligosaccharide phosphorylase domain family and other unidentified sequences. Oligosaccharide phosphorylase catalyzes the breakdown of oligosaccharides into glucose-1-phosphate units. They are important allosteric enzymes in carbohydrate metabolism. The members of this family are found in bacteria and Archaea.
Probab=97.99 E-value=0.00026 Score=74.92 Aligned_cols=99 Identities=15% Similarity=0.087 Sum_probs=74.0
Q ss_pred CEEEEEecCCCccChHHHHHHHHHHHHHccCCCCCCeEEEEcCCCC--CCCHHHHHHHHHHHHhcCCCCcEEEccCCCHH
Q 016925 270 PAIISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRN--KSDEERLQSLKDKSIELKVDGNVEFYKNLLYR 347 (380)
Q Consensus 270 ~~il~VGRl~p~K~~d~li~A~~~l~~~~~~~~~~~~LvIvG~g~~--~~~~~~~~~L~~la~~lgl~~~V~f~G~v~~~ 347 (380)
.+|.++.|+..+|+.+++++.+.++.+-......++.++++|.+-. ...+++...+.+++++....++|.|+-+-+.+
T Consensus 479 ltigfarRfa~YKR~~Lil~dl~rl~~il~~~~~pvQ~IfaGKAhP~d~~gK~iIk~i~~~a~~p~~~~kVvfle~Yd~~ 558 (778)
T cd04299 479 LTIGFARRFATYKRATLLLRDPERLKRLLNDPERPVQFIFAGKAHPADEPGKELIQEIVEFSRRPEFRGRIVFLEDYDMA 558 (778)
T ss_pred cEEeeeecchhhhhHHHHHHHHHHHHHHhhCCCCCeEEEEEEecCccchHHHHHHHHHHHHHhCcCCCCcEEEEcCCCHH
Confidence 3799999999999999999998888542100013588999997731 12245556777888877888899998887776
Q ss_pred HHHHHHhhccEEEeec---hhhHH
Q 016925 348 SVLTIFMHLFVFTMKW---QLVYD 368 (380)
Q Consensus 348 el~~ly~~a~vf~~~~---~~~~~ 368 (380)
--..+++.||+++++. .|..|
T Consensus 559 lA~~LvaG~DvwLn~prrp~EAsG 582 (778)
T cd04299 559 LARHLVQGVDVWLNTPRRPLEASG 582 (778)
T ss_pred HHHHHHhhhhhcccCCCCCCCCCc
Confidence 7779999999999854 45544
No 104
>PF13477 Glyco_trans_4_2: Glycosyl transferase 4-like
Probab=97.89 E-value=0.00062 Score=56.47 Aligned_cols=135 Identities=16% Similarity=0.191 Sum_probs=75.1
Q ss_pred EEEEECCCCCCCCChhHHHHHHHHHHHHhCCCceEEEEcCCCCCChhhHHHHHHhhcCccccCCCeEEEeccccccccCC
Q 016925 36 SVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYTGDHDAFPDSLLARAVDRFGVELLHPPKVVHLYRRKWIEEST 115 (380)
Q Consensus 36 ~I~~~~p~~~~~GG~ervl~~la~~L~~~g~~~~v~v~t~~~~~~~~~~~~~~~~~~g~~l~~~v~~v~l~~~~~~~~~~ 115 (380)
||+++.... +.++.++++.|+++| ++|++++...+. +.. +..++++++.++... .
T Consensus 1 KIl~i~~~~------~~~~~~~~~~L~~~g--~~V~ii~~~~~~--~~~----------~~~~~i~~~~~~~~~-----k 55 (139)
T PF13477_consen 1 KILLIGNTP------STFIYNLAKELKKRG--YDVHIITPRNDY--EKY----------EIIEGIKVIRLPSPR-----K 55 (139)
T ss_pred CEEEEecCc------HHHHHHHHHHHHHCC--CEEEEEEcCCCc--hhh----------hHhCCeEEEEecCCC-----C
Confidence 466666533 457889999999998 788888864331 111 111234455553210 0
Q ss_pred CCccceehhhHhHHHHHHHHHHhcCCcEEEeCCCch-hhHH-HH-hHhC-CcEEEEEeCCcchhhHHHhhhccccccCCC
Q 016925 116 YPRFTMIGQSFGSVYLSWEALCKFTPLYYFDTSGYA-FTYP-LA-RIFG-CRVICYTHYPTISLDMISRVREGSSMYNNN 191 (380)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~l~~~~pDi~~~~~~~~-~~~~-l~-~~~~-~p~v~~~H~p~~~~~~~~~~~~~~~~~~~~ 191 (380)
.+ ...+. .....+.+++.+||+++++...+ +.++ ++ +..+ .|.+.+.|+.+.. .+
T Consensus 56 ~~-----~~~~~-~~~l~k~ik~~~~DvIh~h~~~~~~~~~~l~~~~~~~~~~i~~~hg~~~~--------------~~- 114 (139)
T PF13477_consen 56 SP-----LNYIK-YFRLRKIIKKEKPDVIHCHTPSPYGLFAMLAKKLLKNKKVIYTVHGSDFY--------------NS- 114 (139)
T ss_pred cc-----HHHHH-HHHHHHHhccCCCCEEEEecCChHHHHHHHHHHHcCCCCEEEEecCCeee--------------cC-
Confidence 01 11111 12335568899999876555443 2223 33 4556 8999999964321 00
Q ss_pred ccccccchhhhhHHHHHHHHHHHHHHHhcCCCEEEEcC
Q 016925 192 ASIAQSNWLSQCKIVYYTFFSWMYGLVGSCADLAMVNS 229 (380)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ad~ii~~S 229 (380)
.. . . ++..++++.+.+.+|.+++.|
T Consensus 115 ----~~--~---~----~~~~~~~~~~~k~~~~ii~~~ 139 (139)
T PF13477_consen 115 ----SK--K---K----KLKKFIIKFAFKRADKIIVQS 139 (139)
T ss_pred ----Cc--h---H----HHHHHHHHHHHHhCCEEEEcC
Confidence 00 0 0 023345677888999999976
No 105
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=97.86 E-value=0.0039 Score=60.72 Aligned_cols=238 Identities=16% Similarity=0.137 Sum_probs=137.4
Q ss_pred ChhHHHHHHHHHHHHhCCCceEEEEcCCCCCChhhHHHHHHhhcCccccCCCeEEEeccccccccCCCCccceehhhHhH
Q 016925 49 GGERVLWCAVKAIQEESPDLDCIVYTGDHDAFPDSLLARAVDRFGVELLHPPKVVHLYRRKWIEESTYPRFTMIGQSFGS 128 (380)
Q Consensus 49 G~ervl~~la~~L~~~g~~~~v~v~t~~~~~~~~~~~~~~~~~~g~~l~~~v~~v~l~~~~~~~~~~~~~~~~~~~~~~~ 128 (380)
|--+.+.-++++|.++.|++.+++-|... +.. +.+.+.||- .+.+.+++-. .+
T Consensus 60 GEv~a~~pLv~~l~~~~P~~~ilvTt~T~--Tg~---e~a~~~~~~----~v~h~YlP~D-------~~----------- 112 (419)
T COG1519 60 GEVLAALPLVRALRERFPDLRILVTTMTP--TGA---ERAAALFGD----SVIHQYLPLD-------LP----------- 112 (419)
T ss_pred hHHHHHHHHHHHHHHhCCCCCEEEEecCc--cHH---HHHHHHcCC----CeEEEecCcC-------ch-----------
Confidence 55577888999999998888865544321 111 222233442 2344444321 11
Q ss_pred HHHHHHHHHhcCCcEEE--eCCCchhhHHHHhHhCCcEEEEEeCCcchhhHHHhhhccccccCCCccccccchhhhhHHH
Q 016925 129 VYLSWEALCKFTPLYYF--DTSGYAFTYPLARIFGCRVICYTHYPTISLDMISRVREGSSMYNNNASIAQSNWLSQCKIV 206 (380)
Q Consensus 129 ~~~~~~~l~~~~pDi~~--~~~~~~~~~~l~~~~~~p~v~~~H~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (380)
...++.++..+||+.+ -+.-+++.+--++..++|.+..- ..+ +.+++.++
T Consensus 113 -~~v~rFl~~~~P~l~Ii~EtElWPnli~e~~~~~~p~~LvN--aRL---------------------S~rS~~~y---- 164 (419)
T COG1519 113 -IAVRRFLRKWRPKLLIIMETELWPNLINELKRRGIPLVLVN--ARL---------------------SDRSFARY---- 164 (419)
T ss_pred -HHHHHHHHhcCCCEEEEEeccccHHHHHHHHHcCCCEEEEe--eee---------------------chhhhHHH----
Confidence 0123456788999533 34333333222345688886531 011 11111111
Q ss_pred HHHHHHHHHHHHhcCCCEEEEcCHHHHHHHHHHhCCCCceEEecC-CCCCCCCCCCC-----CC-CCCC-CCEEEEEecC
Q 016925 207 YYTFFSWMYGLVGSCADLAMVNSSWTQSHIEKLWGIPDRIKRVYP-PCDTSGLQVLP-----LE-RSTE-YPAIISVAQF 278 (380)
Q Consensus 207 ~~~~~~~l~~~~~~~ad~ii~~S~~~~~~i~~~~~~~~k~~vi~~-gvd~~~~~~~~-----~~-~~~~-~~~il~VGRl 278 (380)
..+..+.+..++..|.|++.|+-.+++++.+.. . ++.+.=| -.|.+.-.... .. .... ++.++..+.
T Consensus 165 --~k~~~~~~~~~~~i~li~aQse~D~~Rf~~LGa-~-~v~v~GNlKfd~~~~~~~~~~~~~~r~~l~~~r~v~iaaST- 239 (419)
T COG1519 165 --AKLKFLARLLFKNIDLILAQSEEDAQRFRSLGA-K-PVVVTGNLKFDIEPPPQLAAELAALRRQLGGHRPVWVAAST- 239 (419)
T ss_pred --HHHHHHHHHHHHhcceeeecCHHHHHHHHhcCC-c-ceEEecceeecCCCChhhHHHHHHHHHhcCCCCceEEEecC-
Confidence 122334556667899999999999999998643 2 3333222 11221110000 00 0112 688888887
Q ss_pred CCccChHHHHHHHHHHHHHccCCCCCCeEEEEcCCCCCCCHHHHHHHHHHHHhcCCC-------------CcEEEccCCC
Q 016925 279 RPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVD-------------GNVEFYKNLL 345 (380)
Q Consensus 279 ~p~K~~d~li~A~~~l~~~~~~~~~~~~LvIvG~g~~~~~~~~~~~L~~la~~lgl~-------------~~V~f~G~v~ 345 (380)
-+..-+.++++++.+++++ ||..|++|=.- .+...++++++++.|+. .+|.+...
T Consensus 240 -H~GEeei~l~~~~~l~~~~----~~~llIlVPRH-----pERf~~v~~l~~~~gl~~~~rS~~~~~~~~tdV~l~Dt-- 307 (419)
T COG1519 240 -HEGEEEIILDAHQALKKQF----PNLLLILVPRH-----PERFKAVENLLKRKGLSVTRRSQGDPPFSDTDVLLGDT-- 307 (419)
T ss_pred -CCchHHHHHHHHHHHHhhC----CCceEEEecCC-----hhhHHHHHHHHHHcCCeEEeecCCCCCCCCCcEEEEec--
Confidence 3344566899999999876 89999999853 35678999999999876 24444433
Q ss_pred HHHHHHHHhhccE
Q 016925 346 YRSVLTIFMHLFV 358 (380)
Q Consensus 346 ~~el~~ly~~a~v 358 (380)
-.|+-.+|+-||+
T Consensus 308 mGEL~l~y~~adi 320 (419)
T COG1519 308 MGELGLLYGIADI 320 (419)
T ss_pred HhHHHHHHhhccE
Confidence 3488899999998
No 106
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=97.85 E-value=0.0031 Score=59.35 Aligned_cols=79 Identities=14% Similarity=0.103 Sum_probs=58.9
Q ss_pred CCEEEEEecCCCccChHHHHHHHHHHHHHccCCCCCCe-EEEEcCCCCCCCHHHHHHHHHHHHhcCCCCcEEEccCCCHH
Q 016925 269 YPAIISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPR-LQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYR 347 (380)
Q Consensus 269 ~~~il~VGRl~p~K~~d~li~A~~~l~~~~~~~~~~~~-LvIvG~g~~~~~~~~~~~L~~la~~lgl~~~V~f~G~v~~~ 347 (380)
+..+++.|..++.+....++++++.+. ++++ .+++|.+. +..++++++++.. .+|.+.++++
T Consensus 171 ~~iLi~~GG~d~~~~~~~~l~~l~~~~-------~~~~i~vv~G~~~-----~~~~~l~~~~~~~---~~i~~~~~~~-- 233 (279)
T TIGR03590 171 RRVLVSFGGADPDNLTLKLLSALAESQ-------INISITLVTGSSN-----PNLDELKKFAKEY---PNIILFIDVE-- 233 (279)
T ss_pred CeEEEEeCCcCCcCHHHHHHHHHhccc-------cCceEEEEECCCC-----cCHHHHHHHHHhC---CCEEEEeCHH--
Confidence 458999999999887788888887652 3344 35777652 1246788887764 4799999875
Q ss_pred HHHHHHhhccEEEeech
Q 016925 348 SVLTIFMHLFVFTMKWQ 364 (380)
Q Consensus 348 el~~ly~~a~vf~~~~~ 364 (380)
+++++|+.||+.+.+..
T Consensus 234 ~m~~lm~~aDl~Is~~G 250 (279)
T TIGR03590 234 NMAELMNEADLAIGAAG 250 (279)
T ss_pred HHHHHHHHCCEEEECCc
Confidence 89999999999887644
No 107
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=97.78 E-value=0.0058 Score=58.84 Aligned_cols=237 Identities=12% Similarity=0.120 Sum_probs=123.0
Q ss_pred cEEEEECCCCCCCCChhHHHHHHHHHHHHhCCCceEEEEcCCCCCChhhHHHHHHhhcCccccCCCeEEEeccccccccC
Q 016925 35 TSVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYTGDHDAFPDSLLARAVDRFGVELLHPPKVVHLYRRKWIEES 114 (380)
Q Consensus 35 ~~I~~~~p~~~~~GG~ervl~~la~~L~~~g~~~~v~v~t~~~~~~~~~~~~~~~~~~g~~l~~~v~~v~l~~~~~~~~~ 114 (380)
|||.+-.... ---.....+++.|.++| |+|.+.+.+.+. ..++-+.||++ +..++... .+
T Consensus 1 MkIwiDi~~p----~hvhfFk~~I~eL~~~G--heV~it~R~~~~-----~~~LL~~yg~~------y~~iG~~g---~~ 60 (335)
T PF04007_consen 1 MKIWIDITHP----AHVHFFKNIIRELEKRG--HEVLITARDKDE-----TEELLDLYGID------YIVIGKHG---DS 60 (335)
T ss_pred CeEEEECCCc----hHHHHHHHHHHHHHhCC--CEEEEEEeccch-----HHHHHHHcCCC------eEEEcCCC---CC
Confidence 5666554433 24577789999999999 788777655431 12222346653 34554311 01
Q ss_pred CCCccceehhhHhHHHHHHHHHHhcCCcEEEeCCCchhhHH-HHhHhCCcEEEEEeCCcchhhHHHhhhccccccCCCcc
Q 016925 115 TYPRFTMIGQSFGSVYLSWEALCKFTPLYYFDTSGYAFTYP-LARIFGCRVICYTHYPTISLDMISRVREGSSMYNNNAS 193 (380)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~l~~~~pDi~~~~~~~~~~~~-l~~~~~~p~v~~~H~p~~~~~~~~~~~~~~~~~~~~~~ 193 (380)
.+. .+...........+.+++++||++++..+.. .+ ++...++|.|.....+... .
T Consensus 61 ~~~---Kl~~~~~R~~~l~~~~~~~~pDv~is~~s~~--a~~va~~lgiP~I~f~D~e~a~-------------~----- 117 (335)
T PF04007_consen 61 LYG---KLLESIERQYKLLKLIKKFKPDVAISFGSPE--AARVAFGLGIPSIVFNDTEHAI-------------A----- 117 (335)
T ss_pred HHH---HHHHHHHHHHHHHHHHHhhCCCEEEecCcHH--HHHHHHHhCCCeEEEecCchhh-------------c-----
Confidence 111 0111111222334557889999988655432 23 5667899999876643210 0
Q ss_pred ccccchhhhhHHHHHHHHHHHHHHHhcCCCEEEEcCHHHHHHHHHHhCCCCceEEe-cCCCCC----CCCCCCC-----C
Q 016925 194 IAQSNWLSQCKIVYYTFFSWMYGLVGSCADLAMVNSSWTQSHIEKLWGIPDRIKRV-YPPCDT----SGLQVLP-----L 263 (380)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~ad~ii~~S~~~~~~i~~~~~~~~k~~vi-~~gvd~----~~~~~~~-----~ 263 (380)
..+.....||.+++.+-.-.....+. |.. -.+. |||++. ..|.|.+ .
T Consensus 118 --------------------~~~Lt~Pla~~i~~P~~~~~~~~~~~-G~~--~~i~~y~G~~E~ayl~~F~Pd~~vl~~l 174 (335)
T PF04007_consen 118 --------------------QNRLTLPLADVIITPEAIPKEFLKRF-GAK--NQIRTYNGYKELAYLHPFKPDPEVLKEL 174 (335)
T ss_pred --------------------cceeehhcCCeeECCcccCHHHHHhc-CCc--CCEEEECCeeeEEeecCCCCChhHHHHc
Confidence 01223457899999887666665554 432 2344 898763 3354421 1
Q ss_pred CCCCCCCEEEEEecCCCccC------hHHHHHHHHHHHHHccCCCCCCeEEEEcCCCCCCCHHHHHHHHHHHHhcCCCCc
Q 016925 264 ERSTEYPAIISVAQFRPEKA------HPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGN 337 (380)
Q Consensus 264 ~~~~~~~~il~VGRl~p~K~------~d~li~A~~~l~~~~~~~~~~~~LvIvG~g~~~~~~~~~~~L~~la~~lgl~~~ 337 (380)
. .+++++|+. |..+.|- .+.+-+....+.+. .+. ++++-... +.+++.++.+
T Consensus 175 g-~~~~~yIvv--R~~~~~A~y~~~~~~i~~~ii~~L~~~-----~~~-vV~ipr~~---------~~~~~~~~~~---- 232 (335)
T PF04007_consen 175 G-LDDEPYIVV--RPEAWKASYDNGKKSILPEIIEELEKY-----GRN-VVIIPRYE---------DQRELFEKYG---- 232 (335)
T ss_pred C-CCCCCEEEE--EeccccCeeecCccchHHHHHHHHHhh-----Cce-EEEecCCc---------chhhHHhccC----
Confidence 1 124577763 7776554 12233444445332 233 55565321 1122333332
Q ss_pred EEEccCCCHHHHHHHHhhccEEEe
Q 016925 338 VEFYKNLLYRSVLTIFMHLFVFTM 361 (380)
Q Consensus 338 V~f~G~v~~~el~~ly~~a~vf~~ 361 (380)
+.+.... -+..+++.-||+++-
T Consensus 233 ~~i~~~~--vd~~~Ll~~a~l~Ig 254 (335)
T PF04007_consen 233 VIIPPEP--VDGLDLLYYADLVIG 254 (335)
T ss_pred ccccCCC--CCHHHHHHhcCEEEe
Confidence 4444331 134478888888764
No 108
>TIGR02919 accessory Sec system glycosyltransferase GtfB. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus.
Probab=97.67 E-value=0.00067 Score=67.74 Aligned_cols=129 Identities=6% Similarity=-0.014 Sum_probs=91.7
Q ss_pred cCCCEEEEcCHHHHHHHHHHhCCCCceEEecCCCCCCCCCCCCCCCCCCCCEEEEEecCCCccChHHHHHHHHHHHHHcc
Q 016925 220 SCADLAMVNSSWTQSHIEKLWGIPDRIKRVYPPCDTSGLQVLPLERSTEYPAIISVAQFRPEKAHPLQLEAFSVALRKLD 299 (380)
Q Consensus 220 ~~ad~ii~~S~~~~~~i~~~~~~~~k~~vi~~gvd~~~~~~~~~~~~~~~~~il~VGRl~p~K~~d~li~A~~~l~~~~~ 299 (380)
.+.|.||+..+.+++++.+.++...++.+++-|+-.. .+... .....+++++. +..|++++.+.++.
T Consensus 238 ~~~~~iIv~T~~q~~di~~r~~~~~~~~~ip~g~i~~----~~~~~-r~~~~~l~~t~-------s~~I~~i~~Lv~~l- 304 (438)
T TIGR02919 238 TRNKKIIIPNKNEYEKIKELLDNEYQEQISQLGYLYP----FKKDN-KYRKQALILTN-------SDQIEHLEEIVQAL- 304 (438)
T ss_pred cccCeEEeCCHHHHHHHHHHhCcccCceEEEEEEEEe----ecccc-CCcccEEEECC-------HHHHHHHHHHHHhC-
Confidence 5789999999888898988887544555555554311 11111 12457888882 99999999999876
Q ss_pred CCCCCCeEEEEcCCCCCCCHHHHHHHHHHHHhcCCCCcEEEccCCCHHHHHHHHhhccEEEe-echhhHHHHHHHH
Q 016925 300 ADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRSVLTIFMHLFVFTM-KWQLVYDEFLKLY 374 (380)
Q Consensus 300 ~~~~~~~LvIvG~g~~~~~~~~~~~L~~la~~lgl~~~V~f~G~v~~~el~~ly~~a~vf~~-~~~~~~~~~~~~~ 374 (380)
||++|.| |.+.. ..++|+++ +++ ++.+.+.|.. ..++.++|..||+++- +.+|.|+--+..-
T Consensus 305 ---Pd~~f~I-ga~te-----~s~kL~~L-~~y--~nvvly~~~~-~~~l~~ly~~~dlyLdin~~e~~~~al~eA 367 (438)
T TIGR02919 305 ---PDYHFHI-AALTE-----MSSKLMSL-DKY--DNVKLYPNIT-TQKIQELYQTCDIYLDINHGNEILNAVRRA 367 (438)
T ss_pred ---CCcEEEE-EecCc-----ccHHHHHH-Hhc--CCcEEECCcC-hHHHHHHHHhccEEEEccccccHHHHHHHH
Confidence 9999999 76531 22677777 665 5556666654 4689999999999884 8889888766543
No 109
>PRK10117 trehalose-6-phosphate synthase; Provisional
Probab=97.38 E-value=0.011 Score=59.29 Aligned_cols=117 Identities=15% Similarity=0.138 Sum_probs=80.0
Q ss_pred ceEEecCCCCCCCCCCC---CCC--------CCCCCCEEEEEecCCCccChHHHHHHHHHHHHHccCCCCCCeEEEEcCC
Q 016925 245 RIKRVYPPCDTSGLQVL---PLE--------RSTEYPAIISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSC 313 (380)
Q Consensus 245 k~~vi~~gvd~~~~~~~---~~~--------~~~~~~~il~VGRl~p~K~~d~li~A~~~l~~~~~~~~~~~~LvIvG~g 313 (380)
++.+.+-|+|++.|... +.. .-.++..|+.|.|+++-||+..=++||+.+.+++++-..++.|+-+.-.
T Consensus 220 ~v~~~PigID~~~~~~~a~~~~~~~~~~lr~~~~~~~lilgVDRLDytKGi~~rl~Afe~fL~~~Pe~~gkvvlvQia~p 299 (474)
T PRK10117 220 RTEVYPIGIEPDEIAKQAAGPLPPKLAQLKAELKNVQNIFSVERLDYSKGLPERFLAYEALLEKYPQHHGKIRYTQIAPT 299 (474)
T ss_pred EEEEEECeEcHHHHHHHhhchHHHHHHHHHHHcCCCeEEEEecccccccCHHHHHHHHHHHHHhChhhcCCEEEEEEcCC
Confidence 45566678887665431 100 0124679999999999999999999999999988655567778877654
Q ss_pred CCCC---CHHHHHHHHHHHHhc----CCCC--cEEE-ccCCCHHHHHHHHhhccEEEe
Q 016925 314 RNKS---DEERLQSLKDKSIEL----KVDG--NVEF-YKNLLYRSVLTIFMHLFVFTM 361 (380)
Q Consensus 314 ~~~~---~~~~~~~L~~la~~l----gl~~--~V~f-~G~v~~~el~~ly~~a~vf~~ 361 (380)
+... ..++..++++++.+. |-.+ .|.+ ...++++++..+|+.||+.+.
T Consensus 300 sR~~v~~Y~~l~~~v~~~vg~INg~fg~~~w~Pv~y~~~~~~~~~l~alyr~ADv~lV 357 (474)
T PRK10117 300 SRGDVQAYQDIRHQLETEAGRINGKYGQLGWTPLYYLNQHFDRKLLMKIFRYSDVGLV 357 (474)
T ss_pred CCCccHHHHHHHHHHHHHHHHHHhccCCCCceeEEEecCCCCHHHHHHHHHhccEEEe
Confidence 3221 234455666666543 2222 3444 456899999999999999664
No 110
>PF00982 Glyco_transf_20: Glycosyltransferase family 20; InterPro: IPR001830 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 20 GT20 from CAZY comprises enzymes with only one known activity; alpha, alpha-trehalose-phosphate synthase [UDP-forming] (2.4.1.15 from EC). Synthesis of trehalose in the yeast Saccharomyces cerevisiae is catalysed by the trehalose-6-phosphate (Tre6P) synthase/phosphatase complex, which is composed of at least three different subunits encoded by the genes TPS1, TPS2, and TSL1. Tps1 and Tps2 carry the catalytic activities of trehalose synthesis, namely Tre6P synthase (Tps1) and Tre6P phosphatase (Tps2), while TsI1 has regulatory functions. There is some evidence that TsI1 and Tps3 may share a common function with respect to regulation and/or structural stabilisation of the Tre6P synthase/phosphatase complex in exponentially growing, heat-shocked cells []. OtsA (trehalose-6-phosphate synthase) from Escherichia coli has homology to the full-length TPS1, the N-terminal part of TPS2 and an internal region of TPS3 (TSL1) of yeast [].; GO: 0003824 catalytic activity, 0005992 trehalose biosynthetic process; PDB: 1UQU_A 2WTX_A 1UQT_B 1GZ5_B.
Probab=97.21 E-value=0.0086 Score=60.44 Aligned_cols=154 Identities=16% Similarity=0.171 Sum_probs=82.1
Q ss_pred CCCEEEEcCHHHHHHH----HHHhCC--------------CCceEEecCCCCCCCCCCC---C-CC--------CCCC-C
Q 016925 221 CADLAMVNSSWTQSHI----EKLWGI--------------PDRIKRVYPPCDTSGLQVL---P-LE--------RSTE-Y 269 (380)
Q Consensus 221 ~ad~ii~~S~~~~~~i----~~~~~~--------------~~k~~vi~~gvd~~~~~~~---~-~~--------~~~~-~ 269 (380)
.||.|=..+..-++.. ++..+. ..++.+.+.|+|++.+... + .. .-.+ .
T Consensus 197 ~aDlIgFqt~~~~~nFl~~~~r~lg~~~~~~~~~v~~~Gr~v~v~~~pigId~~~~~~~~~~~~v~~~~~~l~~~~~~~~ 276 (474)
T PF00982_consen 197 GADLIGFQTFEYARNFLSCCKRLLGLEVDSDRGTVEYNGRRVRVGVFPIGIDPDAFAQLARSPEVQERAEELREKFKGKR 276 (474)
T ss_dssp TSSEEEESSHHHHHHHHHHHHHHS-EEEEETTE-EEETTEEEEEEE------HHHHHHHHH-S---HHHHHHHHHTTT-S
T ss_pred cCCEEEEecHHHHHHHHHHHHHHcCCcccCCCceEEECCEEEEEEEeeccCChHHHHhhccChHHHHHHHHHHHhcCCCc
Confidence 6888888776554443 233322 1124455667886655421 0 00 0123 3
Q ss_pred CEEEEEecCCCccChHHHHHHHHHHHHHccCCCCCCeEEEEcCCCCCCCH---HHHHHHHHHHHhc----CCCC--cEE-
Q 016925 270 PAIISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDE---ERLQSLKDKSIEL----KVDG--NVE- 339 (380)
Q Consensus 270 ~~il~VGRl~p~K~~d~li~A~~~l~~~~~~~~~~~~LvIvG~g~~~~~~---~~~~~L~~la~~l----gl~~--~V~- 339 (380)
..|+.|.|+++.||+..=++||..+.+++++-..++.|+-++........ ++.+++++++.+. |-.+ .|.
T Consensus 277 ~ii~gvDrld~~kGi~~kl~Afe~fL~~~P~~~~kv~liQi~~psr~~~~~y~~~~~~v~~~v~~IN~~~g~~~~~PI~~ 356 (474)
T PF00982_consen 277 KIIVGVDRLDYTKGIPEKLRAFERFLERYPEYRGKVVLIQIAVPSREDVPEYQELRREVEELVGRINGKYGTPDWTPIIY 356 (474)
T ss_dssp EEEEEE--B-GGG-HHHHHHHHHHHHHH-GGGTTTEEEEEE--B-STTSHHHHHHHHHHHHHHHHHHHHH-BTTB-SEEE
T ss_pred EEEEEeccchhhcCHHHHHHHHHHHHHhCcCccCcEEEEEEeeccCccchhHHHHHHHHHHHHHHHHhhcccCCceeEEE
Confidence 78999999999999999999999999998655567788877765433332 4556666666643 3222 344
Q ss_pred EccCCCHHHHHHHHhhccEEEe-echhhHHHHHHHH
Q 016925 340 FYKNLLYRSVLTIFMHLFVFTM-KWQLVYDEFLKLY 374 (380)
Q Consensus 340 f~G~v~~~el~~ly~~a~vf~~-~~~~~~~~~~~~~ 374 (380)
+.+.++.+++..+|+.||+++. +-++.-.-.-|-|
T Consensus 357 ~~~~~~~~~~~aly~~aDv~lvTslrDGmNLva~Ey 392 (474)
T PF00982_consen 357 IYRSLSFEELLALYRAADVALVTSLRDGMNLVAKEY 392 (474)
T ss_dssp E-S---HHHHHHHHHH-SEEEE--SSBS--HHHHHH
T ss_pred EecCCCHHHHHHHHHhhhhEEecchhhccCCcceEE
Confidence 5667999999999999999765 5555544444443
No 111
>PF08323 Glyco_transf_5: Starch synthase catalytic domain; InterPro: IPR013534 This region represents the catalytic domain of glycogen (or starch) synthases that use ADP-glucose (2.4.1.21 from EC), rather than UDP-glucose (2.4.1.11 from EC) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.; PDB: 2BIS_C 3L01_A 3FRO_A 2R4U_A 2R4T_A 3D1J_A 3COP_A 3GUH_A 2QZS_A 3CX4_A ....
Probab=97.13 E-value=0.0047 Score=56.96 Aligned_cols=40 Identities=18% Similarity=0.139 Sum_probs=27.8
Q ss_pred EEEEECCCC---CCCCChhHHHHHHHHHHHHhCCCceEEEEcCCC
Q 016925 36 SVAFFHPNT---NDGGGGERVLWCAVKAIQEESPDLDCIVYTGDH 77 (380)
Q Consensus 36 ~I~~~~p~~---~~~GG~ervl~~la~~L~~~g~~~~v~v~t~~~ 77 (380)
||+++.+-. ...||..-++..+.++|+++| ++|.+++..+
T Consensus 1 kIl~vt~E~~P~~k~GGLgdv~~~L~kaL~~~G--~~V~Vi~P~y 43 (245)
T PF08323_consen 1 KILMVTSEYAPFAKVGGLGDVVGSLPKALAKQG--HDVRVIMPKY 43 (245)
T ss_dssp EEEEE-S-BTTTB-SSHHHHHHHHHHHHHHHTT---EEEEEEE-T
T ss_pred CEEEEEcccCcccccCcHhHHHHHHHHHHHhcC--CeEEEEEccc
Confidence 566665322 135899999999999999999 7777777554
No 112
>PF05693 Glycogen_syn: Glycogen synthase; InterPro: IPR008631 This family consists of the eukaryotic glycogen synthase proteins GYS1, GYS2 and GYS3. Glycogen synthase (GS) is the enzyme responsible for the synthesis of -1,4-linked glucose chains in glycogen. It is the rate limiting enzyme in the synthesis of the polysaccharide, and its activity is highly regulated through phosphorylation at multiple sites and also by allosteric effectors, mainly glucose 6-phosphate (G6P) [].; GO: 0004373 glycogen (starch) synthase activity, 0005978 glycogen biosynthetic process; PDB: 3NB0_C 3RT1_C 3RSZ_D 3O3C_B 3NAZ_B 3NCH_D.
Probab=97.07 E-value=0.0072 Score=61.58 Aligned_cols=83 Identities=12% Similarity=0.031 Sum_probs=56.2
Q ss_pred HHHHHHhcCCCEEEEcCHHHHHHHHHHhCCCCceEEecCCCCCCCCCCCCC------------------------C-CCC
Q 016925 213 WMYGLVGSCADLAMVNSSWTQSHIEKLWGIPDRIKRVYPPCDTSGLQVLPL------------------------E-RST 267 (380)
Q Consensus 213 ~l~~~~~~~ad~ii~~S~~~~~~i~~~~~~~~k~~vi~~gvd~~~~~~~~~------------------------~-~~~ 267 (380)
.+|+.....||.+-|||+-|+.+.+.+++.... .|++||++.+.|..... + ..+
T Consensus 213 ~iEraaA~~AdvFTTVSeITa~Ea~~LL~r~pD-vV~pNGl~v~~~~~~~efqnl~~~~k~ki~~fv~~~f~g~~dfd~d 291 (633)
T PF05693_consen 213 SIERAAAHYADVFTTVSEITAKEAEHLLKRKPD-VVTPNGLNVDKFPALHEFQNLHAKAKEKIHEFVRGHFYGHYDFDLD 291 (633)
T ss_dssp HHHHHHHHHSSEEEESSHHHHHHHHHHHSS--S-EE----B-GGGTSSTTHHHHHHHHHHHHHHHHHHHHSTT---S-GG
T ss_pred HHHHHHHHhcCeeeehhhhHHHHHHHHhCCCCC-EEcCCCccccccccchHHHHHHHHHHHHHHHHHHHHhcccCCCCcc
Confidence 477888899999999999999999998875333 47899998665443110 0 002
Q ss_pred CCCEEEEEecCC-CccChHHHHHHHHHHHH
Q 016925 268 EYPAIISVAQFR-PEKAHPLQLEAFSVALR 296 (380)
Q Consensus 268 ~~~~il~VGRl~-p~K~~d~li~A~~~l~~ 296 (380)
+.-++..-||++ ..||+|.+|+|+++|-.
T Consensus 292 ~tl~~ftsGRYEf~NKG~D~fieAL~rLn~ 321 (633)
T PF05693_consen 292 KTLYFFTSGRYEFRNKGIDVFIEALARLNH 321 (633)
T ss_dssp GEEEEEEESSS-TTTTTHHHHHHHHHHHHH
T ss_pred ceEEEEeeeceeeecCCccHHHHHHHHHHH
Confidence 234677889999 69999999999999854
No 113
>COG0380 OtsA Trehalose-6-phosphate synthase [Carbohydrate transport and metabolism]
Probab=97.01 E-value=0.019 Score=57.55 Aligned_cols=122 Identities=13% Similarity=0.067 Sum_probs=83.6
Q ss_pred ceEEecCCCCCCCCCCCC---CC----------CCCCCCEEEEEecCCCccChHHHHHHHHHHHHHccCCCCCCeEEEEc
Q 016925 245 RIKRVYPPCDTSGLQVLP---LE----------RSTEYPAIISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVG 311 (380)
Q Consensus 245 k~~vi~~gvd~~~~~~~~---~~----------~~~~~~~il~VGRl~p~K~~d~li~A~~~l~~~~~~~~~~~~LvIvG 311 (380)
++...+-|+|+..|.... .- ...++..|+.+-|+++-||+..=+.||.+++.++++-..++.|+-++
T Consensus 245 ~v~a~PIgID~~~~~~~~~~~~v~~~~~el~~~~~~~~kiivgvDRlDy~kGi~~rl~Afe~lL~~~Pe~~~kvvliQi~ 324 (486)
T COG0380 245 KVGAFPIGIDPEEFERALKSPSVQEKVLELKAELGRNKKLIVGVDRLDYSKGIPQRLLAFERLLEEYPEWRGKVVLLQIA 324 (486)
T ss_pred EEEEEeeecCHHHHHHhhcCCchhhHHHHHHHHhcCCceEEEEehhcccccCcHHHHHHHHHHHHhChhhhCceEEEEec
Confidence 455566688876554311 00 01236789999999999999999999999999886666678888888
Q ss_pred CCCCCCCHH---HHHHHHHHHHhc----CCC--CcEEEc-cCCCHHHHHHHHhhccEEEe-echhh
Q 016925 312 SCRNKSDEE---RLQSLKDKSIEL----KVD--GNVEFY-KNLLYRSVLTIFMHLFVFTM-KWQLV 366 (380)
Q Consensus 312 ~g~~~~~~~---~~~~L~~la~~l----gl~--~~V~f~-G~v~~~el~~ly~~a~vf~~-~~~~~ 366 (380)
.++.....+ +..++++++.+. |-. ..|+|. -.++++++..+|+.||+++. +-++.
T Consensus 325 ~pSr~~v~~y~~~~~~i~~~V~rIN~~fG~~~~~Pv~~l~~~~~~~~l~al~~~aDv~lVtplrDG 390 (486)
T COG0380 325 PPSREDVEEYQALRLQIEELVGRINGEFGSLSWTPVHYLHRDLDRNELLALYRAADVMLVTPLRDG 390 (486)
T ss_pred CCCccccHHHHHHHHHHHHHHHHHHhhcCCCCcceeEEEeccCCHHHHHHHHhhhceeeecccccc
Confidence 775544444 445566655543 211 245544 45899999999999999664 44443
No 114
>PLN02205 alpha,alpha-trehalose-phosphate synthase [UDP-forming]
Probab=96.96 E-value=0.053 Score=58.67 Aligned_cols=121 Identities=12% Similarity=0.027 Sum_probs=79.7
Q ss_pred ceEEecCCCCCCCCCCC---CC--------CCC---CCCCEEEEEecCCCccChHHHHHHHHHHHHHccCCCCCCeEEEE
Q 016925 245 RIKRVYPPCDTSGLQVL---PL--------ERS---TEYPAIISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFV 310 (380)
Q Consensus 245 k~~vi~~gvd~~~~~~~---~~--------~~~---~~~~~il~VGRl~p~K~~d~li~A~~~l~~~~~~~~~~~~LvIv 310 (380)
++.+.+.|+|+..|... +. ... .++..|+.|.|+++-||+..=+.||.++.+++++-..++.|+-+
T Consensus 301 ~v~~~PigId~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ilgVDrlD~~KGi~~kl~A~e~~L~~~P~~~gkvvlvQi 380 (854)
T PLN02205 301 SIKILPVGIHMGQLQSVLSLPETEAKVKELIKQFCDQDRIMLLGVDDMDIFKGISLKLLAMEQLLMQHPEWQGKVVLVQI 380 (854)
T ss_pred EEEEEeCeEcHHHHHHHhcChhHHHHHHHHHHHhccCCCEEEEEccCcccccCHHHHHHHHHHHHHhCccccCCEEEEEE
Confidence 35556678887655431 10 000 13579999999999999999999999999988544445567766
Q ss_pred cCCCCC---CCHHHHHHHHHHHHhc----CCC--CcEEEc-cCCCHHHHHHHHhhccEEEe-echh
Q 016925 311 GSCRNK---SDEERLQSLKDKSIEL----KVD--GNVEFY-KNLLYRSVLTIFMHLFVFTM-KWQL 365 (380)
Q Consensus 311 G~g~~~---~~~~~~~~L~~la~~l----gl~--~~V~f~-G~v~~~el~~ly~~a~vf~~-~~~~ 365 (380)
.-.... ...++..++++++.+. |-. ..|++. ..++.+|+..+|+.||+++. +-++
T Consensus 381 a~psr~~~~~y~~~~~ev~~~v~rIN~~fg~~~~~Pv~~~~~~~~~~e~~aly~~ADv~lVT~lRD 446 (854)
T PLN02205 381 ANPARGKGKDVKEVQAETHSTVKRINETFGKPGYDPIVLIDAPLKFYERVAYYVVAECCLVTAVRD 446 (854)
T ss_pred ecCCCcccHHHHHHHHHHHHHHHHHHhhcCCCCCceEEEEecCCCHHHHHHHHHhccEEEeccccc
Confidence 644321 2233445556666543 222 245654 67899999999999999664 4443
No 115
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=96.96 E-value=0.43 Score=48.44 Aligned_cols=88 Identities=15% Similarity=0.066 Sum_probs=76.9
Q ss_pred CCEEEEEecCCCccChHHHHHHHHHHHHHccCCCCCCeEEEEcCCCCCCCHHHHHHHHHHHHhcCCC-CcEEEccCCCHH
Q 016925 269 YPAIISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVD-GNVEFYKNLLYR 347 (380)
Q Consensus 269 ~~~il~VGRl~p~K~~d~li~A~~~l~~~~~~~~~~~~LvIvG~g~~~~~~~~~~~L~~la~~lgl~-~~V~f~G~v~~~ 347 (380)
+..++|.+-=.+.|-...+++-+.++.+.. ||-.|++-|+|. +.+....|++++++.|+. ++.+|.+..+++
T Consensus 428 ~~avVf~c~~n~~K~~pev~~~wmqIL~~v----P~Svl~L~~~~~---~~~~~~~l~~la~~~Gv~~eRL~f~p~~~~~ 500 (620)
T COG3914 428 EDAVVFCCFNNYFKITPEVFALWMQILSAV----PNSVLLLKAGGD---DAEINARLRDLAEREGVDSERLRFLPPAPNE 500 (620)
T ss_pred CCeEEEEecCCcccCCHHHHHHHHHHHHhC----CCcEEEEecCCC---cHHHHHHHHHHHHHcCCChhheeecCCCCCH
Confidence 467788887788999999999999998875 999999999874 356778999999999997 899999999999
Q ss_pred HHHHHHhhccEEEeec
Q 016925 348 SVLTIFMHLFVFTMKW 363 (380)
Q Consensus 348 el~~ly~~a~vf~~~~ 363 (380)
+-.+-|.-||+|+=.|
T Consensus 501 ~h~a~~~iADlvLDTy 516 (620)
T COG3914 501 DHRARYGIADLVLDTY 516 (620)
T ss_pred HHHHhhchhheeeecc
Confidence 9999999999987443
No 116
>COG4671 Predicted glycosyl transferase [General function prediction only]
Probab=96.69 E-value=0.63 Score=44.59 Aligned_cols=278 Identities=16% Similarity=0.159 Sum_probs=139.2
Q ss_pred cCCCCcEEEEECCCCCCCCChhHHHHHHHHHHHHhCCCceEEEEcCCCCCChhhHHHHHHhhcCccccCCCeEEEecccc
Q 016925 30 RRNRTTSVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYTGDHDAFPDSLLARAVDRFGVELLHPPKVVHLYRRK 109 (380)
Q Consensus 30 ~~~~~~~I~~~~p~~~~~GG~ervl~~la~~L~~~g~~~~v~v~t~~~~~~~~~~~~~~~~~~g~~l~~~v~~v~l~~~~ 109 (380)
+..+.+||.|+..++. |=|--+-+..+|.+|++.-.+.+|+++|+..... +++.+.+|.++.++.-
T Consensus 5 ~~~~~~Ri~~Yshd~~-GlGHlrR~~~Ia~aLv~d~~~~~Il~IsG~~~~~------------~F~~~~gVd~V~LPsl- 70 (400)
T COG4671 5 EASKRPRILFYSHDLL-GLGHLRRALRIAHALVEDYLGFDILIISGGPPAG------------GFPGPAGVDFVKLPSL- 70 (400)
T ss_pred chhccceEEEEehhhc-cchHHHHHHHHHHHHhhcccCceEEEEeCCCccC------------CCCCcccCceEecCce-
Confidence 4456679998766553 2366677889999999985568999998753221 4556666666666430
Q ss_pred cccc-CCCCccce---ehhh--HhHHHHHHHHHHhcCCcEEE-eCCCchhh---HH-HH--hHhCCcEEEEEeCCcchhh
Q 016925 110 WIEE-STYPRFTM---IGQS--FGSVYLSWEALCKFTPLYYF-DTSGYAFT---YP-LA--RIFGCRVICYTHYPTISLD 176 (380)
Q Consensus 110 ~~~~-~~~~~~~~---~~~~--~~~~~~~~~~l~~~~pDi~~-~~~~~~~~---~~-l~--~~~~~p~v~~~H~p~~~~~ 176 (380)
+... ..|..... .... +++ -........++||+++ +.--+..- .| +. +..+.+.+.-... ..|
T Consensus 71 ~k~~~G~~~~~d~~~~l~e~~~~Rs-~lil~t~~~fkPDi~IVd~~P~Glr~EL~ptL~yl~~~~t~~vL~lr~---i~D 146 (400)
T COG4671 71 IKGDNGEYGLVDLDGDLEETKKLRS-QLILSTAETFKPDIFIVDKFPFGLRFELLPTLEYLKTTGTRLVLGLRS---IRD 146 (400)
T ss_pred EecCCCceeeeecCCCHHHHHHHHH-HHHHHHHHhcCCCEEEEeccccchhhhhhHHHHHHhhcCCcceeehHh---hhh
Confidence 0000 00110000 0111 111 1223557899999765 43221100 12 11 1123232221110 011
Q ss_pred HHHhhhccccccCCCccccccchhhhhHHHHHHHHHHHHHHHhcCCCEEEEcCHHHHHHHHHHhCC--CCceEEecCCCC
Q 016925 177 MISRVREGSSMYNNNASIAQSNWLSQCKIVYYTFFSWMYGLVGSCADLAMVNSSWTQSHIEKLWGI--PDRIKRVYPPCD 254 (380)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ad~ii~~S~~~~~~i~~~~~~--~~k~~vi~~gvd 254 (380)
..+. .. ..|.+. -.++.+-+..|.|.+.-.-.-.++.+.|+. ..+.++.|-|.-
T Consensus 147 ~p~~--------------~~---~~w~~~-------~~~~~I~r~yD~V~v~GdP~f~d~~~~~~~~~~i~~k~~ytG~v 202 (400)
T COG4671 147 IPQE--------------LE---ADWRRA-------ETVRLINRFYDLVLVYGDPDFYDPLTEFPFAPAIRAKMRYTGFV 202 (400)
T ss_pred chhh--------------hc---cchhhh-------HHHHHHHHhheEEEEecCccccChhhcCCccHhhhhheeEeEEe
Confidence 1100 00 111111 112334467799998765555556666665 235567787764
Q ss_pred CCCCC--CCCCCC-CCCCCEEEEEecCCCccChHHHHHHHHHHHHHccCCCCCCe---EEEEcCCCCCCCHHHHHHHHHH
Q 016925 255 TSGLQ--VLPLER-STEYPAIISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPR---LQFVGSCRNKSDEERLQSLKDK 328 (380)
Q Consensus 255 ~~~~~--~~~~~~-~~~~~~il~VGRl~p~K~~d~li~A~~~l~~~~~~~~~~~~---LvIvG~g~~~~~~~~~~~L~~l 328 (380)
..... +.+..+ .++...++++| .-+-|-+.+-.+++.. ... ++++ +++.|.- . -.+-+++|.+.
T Consensus 203 q~~~~~~~~p~~~~pE~~~Ilvs~G--GG~dG~eLi~~~l~A~-~~l----~~l~~~~~ivtGP~-M--P~~~r~~l~~~ 272 (400)
T COG4671 203 QRSLPHLPLPPHEAPEGFDILVSVG--GGADGAELIETALAAA-QLL----AGLNHKWLIVTGPF-M--PEAQRQKLLAS 272 (400)
T ss_pred eccCcCCCCCCcCCCccceEEEecC--CChhhHHHHHHHHHHh-hhC----CCCCcceEEEeCCC-C--CHHHHHHHHHh
Confidence 11111 112111 22245677787 3445555544433332 221 3343 6777743 1 12334455554
Q ss_pred HHhcCCCCcEEEccCCCHHHHHHHHhhccEEE-eech
Q 016925 329 SIELKVDGNVEFYKNLLYRSVLTIFMHLFVFT-MKWQ 364 (380)
Q Consensus 329 a~~lgl~~~V~f~G~v~~~el~~ly~~a~vf~-~~~~ 364 (380)
|. =.++|...-+ ++|+..|+..|+..+ |..+
T Consensus 273 A~---~~p~i~I~~f--~~~~~~ll~gA~~vVSm~GY 304 (400)
T COG4671 273 AP---KRPHISIFEF--RNDFESLLAGARLVVSMGGY 304 (400)
T ss_pred cc---cCCCeEEEEh--hhhHHHHHHhhheeeecccc
Confidence 44 3578998888 568999999999966 4443
No 117
>PF12000 Glyco_trans_4_3: Gkycosyl transferase family 4 group; InterPro: IPR022623 This presumed domain is functionally uncharacterised and found in bacteria. This region is about 170 amino acids in length and is found N-terminal to PF00534 from PFAM. There is a single completely conserved residue G that may be functionally important.
Probab=96.53 E-value=0.055 Score=46.88 Aligned_cols=103 Identities=16% Similarity=0.206 Sum_probs=59.1
Q ss_pred hcCCcEEEeCCCchhhHHHHhH-hCCcEEEEEeC---CcchhhHHHhhhccccccCCCccccccchhhhhHHHHHHHHHH
Q 016925 138 KFTPLYYFDTSGYAFTYPLARI-FGCRVICYTHY---PTISLDMISRVREGSSMYNNNASIAQSNWLSQCKIVYYTFFSW 213 (380)
Q Consensus 138 ~~~pDi~~~~~~~~~~~~l~~~-~~~p~v~~~H~---p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (380)
.+.||+++.+.+..-++-+.-. ..+|+++|+-+ +.. .| ..| ++..+. ......+ .+.-+.
T Consensus 64 Gf~PDvI~~H~GWGe~Lflkdv~P~a~li~Y~E~~y~~~g-~d---------~~F--Dpe~p~-~~~~~~~---~r~rN~ 127 (171)
T PF12000_consen 64 GFVPDVIIAHPGWGETLFLKDVFPDAPLIGYFEFYYRASG-AD---------VGF--DPEFPP-SLDDRAR---LRMRNA 127 (171)
T ss_pred CCCCCEEEEcCCcchhhhHHHhCCCCcEEEEEEEEecCCC-Cc---------CCC--CCCCCC-CHHHHHH---HHHHhH
Confidence 5678998888776654434433 57899987643 111 01 011 111111 1111111 111122
Q ss_pred HHHHHhcCCCEEEEcCHHHHHHHHHHhCCCCceEEecCCCCCCCC
Q 016925 214 MYGLVGSCADLAMVNSSWTQSHIEKLWGIPDRIKRVYPPCDTSGL 258 (380)
Q Consensus 214 l~~~~~~~ad~ii~~S~~~~~~i~~~~~~~~k~~vi~~gvd~~~~ 258 (380)
..-..+..||..++.++|+++..=..+ .+|+.||+-|||++.+
T Consensus 128 ~~l~~l~~~D~~isPT~wQ~~~fP~~~--r~kI~VihdGiDt~~~ 170 (171)
T PF12000_consen 128 HNLLALEQADAGISPTRWQRSQFPAEF--RSKISVIHDGIDTDRF 170 (171)
T ss_pred HHHHHHHhCCcCcCCCHHHHHhCCHHH--HcCcEEeecccchhhc
Confidence 223345689999999999888754444 3699999999998755
No 118
>PF12038 DUF3524: Domain of unknown function (DUF3524); InterPro: IPR022701 This domain is functionally uncharacterised and is found in bacteria and eukaryotes. It is about 170 amino acids in length and is found associated with PF00534 from PFAM. Two conserved sequence motifs are found within this entry: HENQ and FNS. There is also a single completely conserved residue S that may be functionally important.
Probab=96.40 E-value=0.057 Score=46.13 Aligned_cols=34 Identities=15% Similarity=0.247 Sum_probs=23.9
Q ss_pred cEEEEECCCCCCCCChhHHHHHHHHHHHHhCCCceEEEEcC
Q 016925 35 TSVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYTG 75 (380)
Q Consensus 35 ~~I~~~~p~~~~~GG~ervl~~la~~L~~~g~~~~v~v~t~ 75 (380)
|+|+++-|+. ||..+...+. |.+.- +|+++++|.
T Consensus 1 M~ILlle~y~---ggSHk~~~~~---L~~~~-~~~~~lltL 34 (168)
T PF12038_consen 1 MRILLLEPYY---GGSHKQWADG---LAAHS-EHEWTLLTL 34 (168)
T ss_pred CeEEEEcccc---ccCHHHHHHH---HHHhc-cCCEEEEEc
Confidence 7999999977 7888776554 43332 467777774
No 119
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=96.34 E-value=1 Score=43.02 Aligned_cols=29 Identities=10% Similarity=0.024 Sum_probs=24.1
Q ss_pred CCCcEEEccCCCHHHHHHHHhhccEEEeec
Q 016925 334 VDGNVEFYKNLLYRSVLTIFMHLFVFTMKW 363 (380)
Q Consensus 334 l~~~V~f~G~v~~~el~~ly~~a~vf~~~~ 363 (380)
++++|.+.++.+ +++.++|+.||+++...
T Consensus 227 ~~~~v~~~~~~~-~~~~~~l~~ad~vI~~~ 255 (321)
T TIGR00661 227 YNENVEIRRITT-DNFKELIKNAELVITHG 255 (321)
T ss_pred cCCCEEEEECCh-HHHHHHHHhCCEEEECC
Confidence 457899998876 68999999999998743
No 120
>PRK02797 4-alpha-L-fucosyltransferase; Provisional
Probab=95.97 E-value=0.86 Score=43.11 Aligned_cols=155 Identities=13% Similarity=0.136 Sum_probs=101.7
Q ss_pred HHHHHHHHHhcCCCEEEEcCHHHHHH-HHHHhCCCCceEEecCCCCCC-CCCCCCCCCCCCCCEEEEEecC-CCccChHH
Q 016925 210 FFSWMYGLVGSCADLAMVNSSWTQSH-IEKLWGIPDRIKRVYPPCDTS-GLQVLPLERSTEYPAIISVAQF-RPEKAHPL 286 (380)
Q Consensus 210 ~~~~l~~~~~~~ad~ii~~S~~~~~~-i~~~~~~~~k~~vi~~gvd~~-~~~~~~~~~~~~~~~il~VGRl-~p~K~~d~ 286 (380)
+|..+.+.+.++...|++ .+..-.. .++.++.+.+ ..|-|.... ...........+++..+.||+= +|.-+|-.
T Consensus 87 lfy~lRR~aq~rvg~v~a-trGD~~~~a~~~~~v~~~--llyfpt~m~~~l~~~~~~~~~~~~~tIlvGNSgd~SN~Hie 163 (322)
T PRK02797 87 LFYPLRRLAQKRVGHVFA-TRGDLSYFAQRHPKVPGS--LLYFPTRMDPSLNTMANDRQRAGKMTILVGNSGDRSNRHIE 163 (322)
T ss_pred HHHHHHHHHHhhcCeEEE-ecchHHHHHHhcCCCCcc--EEecCCcchhhhccccccccCCCceEEEEeCCCCCcccHHH
Confidence 455555666778889998 4334444 3455555433 355443221 1121111111234678888865 47788888
Q ss_pred HHHHHHHHHHHccCCCCCCeEEEEcCCCCCCCHHHHHHHHHHHHhcCCCCcEEE-ccCCCHHHHHHHHhhccE--EEeec
Q 016925 287 QLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEF-YKNLLYRSVLTIFMHLFV--FTMKW 363 (380)
Q Consensus 287 li~A~~~l~~~~~~~~~~~~LvIvG~g~~~~~~~~~~~L~~la~~lgl~~~V~f-~G~v~~~el~~ly~~a~v--f~~~~ 363 (380)
+++++.+... .++++++.=+.+ +.+++|.+++++.++++--.+++.. ....+-+|=..+++.||+ |....
T Consensus 164 ~L~~l~~~~~------~~v~ii~PlsYp-~gn~~Yi~~V~~~~~~lF~~~~~~~L~e~l~f~eYl~lL~~~Dl~~f~~~R 236 (322)
T PRK02797 164 ALRALHQQFG------DNVKIIVPMGYP-ANNQAYIEEVRQAGLALFGAENFQILTEKLPFDDYLALLRQCDLGYFIFAR 236 (322)
T ss_pred HHHHHHHHhC------CCeEEEEECCcC-CCCHHHHHHHHHHHHHhcCcccEEehhhhCCHHHHHHHHHhCCEEEEeech
Confidence 7777776532 688877664432 3578999999999999987567664 667899999999999999 55578
Q ss_pred hhhHHHHHHHH
Q 016925 364 QLVYDEFLKLY 374 (380)
Q Consensus 364 ~~~~~~~~~~~ 374 (380)
|+..|.-.-|+
T Consensus 237 QQgiGnl~lLi 247 (322)
T PRK02797 237 QQGIGTLCLLI 247 (322)
T ss_pred hhHHhHHHHHH
Confidence 88888866554
No 121
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=95.92 E-value=1.5 Score=42.96 Aligned_cols=37 Identities=16% Similarity=0.065 Sum_probs=28.0
Q ss_pred cEEEEECCCCCCCCChhHHHHHHHHHHHHhCCCceEEEEcCC
Q 016925 35 TSVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYTGD 76 (380)
Q Consensus 35 ~~I~~~~p~~~~~GG~ervl~~la~~L~~~g~~~~v~v~t~~ 76 (380)
|||+|+.... -|--.-++.++++|+++| |+|+++|..
T Consensus 1 mrIl~~~~p~---~GHv~P~l~la~~L~~rG--h~V~~~t~~ 37 (401)
T cd03784 1 MRVLITTIGS---RGDVQPLVALAWALRAAG--HEVRVATPP 37 (401)
T ss_pred CeEEEEeCCC---cchHHHHHHHHHHHHHCC--CeEEEeeCH
Confidence 7889877643 244455679999999999 888888754
No 122
>PRK10017 colanic acid biosynthesis protein; Provisional
Probab=95.85 E-value=2.3 Score=42.58 Aligned_cols=43 Identities=16% Similarity=0.166 Sum_probs=35.7
Q ss_pred cEEEEECCCCCCCCChhHHHHHHHHHHHHhCCCceEEEEcCCC
Q 016925 35 TSVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYTGDH 77 (380)
Q Consensus 35 ~~I~~~~p~~~~~GG~ervl~~la~~L~~~g~~~~v~v~t~~~ 77 (380)
|||.+.--+....-|-|-++..++..|.+..|+.+++|++...
T Consensus 1 ~~i~i~G~~g~~N~GdeAil~~ii~~l~~~~p~~~i~v~S~~P 43 (426)
T PRK10017 1 MKLLILGNHTCGNRGDSAILRGLLDAINILNPHAEVDVMSRYP 43 (426)
T ss_pred CeEEEEccccCCCccHHHHHHHHHHHHHhhCCCCeEEEEecCc
Confidence 6777776655444699999999999999999999999998653
No 123
>PF02684 LpxB: Lipid-A-disaccharide synthetase; InterPro: IPR003835 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. These enzymes belong to the glycosyltransferase family 19 GT19 from CAZY. Lipid-A-disaccharide synthetase 2.4.1.182 from EC is involved with acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase 2.3.1.129 from EC and tetraacyldisaccharide 4'-kinase 2.7.1.130 from EC in the biosynthesis of the phosphorylated glycolipid, lipid A, in the outer membrane of Escherichia coli and other bacteria. These enzymes catalyse the first disaccharide step in the synthesis of lipid-A-disaccharide.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=95.51 E-value=0.49 Score=46.34 Aligned_cols=128 Identities=12% Similarity=0.025 Sum_probs=76.1
Q ss_pred hcCCCEEEEcCHHHHHHHHHHhCCCCceEEecCCC-CCCCCCCCCC-----CCCCCCCE-EEEEe-cCCC-ccChHHHHH
Q 016925 219 GSCADLAMVNSSWTQSHIEKLWGIPDRIKRVYPPC-DTSGLQVLPL-----ERSTEYPA-IISVA-QFRP-EKAHPLQLE 289 (380)
Q Consensus 219 ~~~ad~ii~~S~~~~~~i~~~~~~~~k~~vi~~gv-d~~~~~~~~~-----~~~~~~~~-il~VG-Rl~p-~K~~d~li~ 289 (380)
.+.+|.++|.=.|..+..++.. -+++.|=+|. |.-....... .-.+++++ .+.-| |-.. .+....+++
T Consensus 131 ~~~~D~ll~ifPFE~~~y~~~g---~~~~~VGHPl~d~~~~~~~~~~~~~~~l~~~~~iIaLLPGSR~~EI~rllP~~l~ 207 (373)
T PF02684_consen 131 KKYVDHLLVIFPFEPEFYKKHG---VPVTYVGHPLLDEVKPEPDRAEAREKLLDPDKPIIALLPGSRKSEIKRLLPIFLE 207 (373)
T ss_pred HHHHhheeECCcccHHHHhccC---CCeEEECCcchhhhccCCCHHHHHHhcCCCCCcEEEEeCCCCHHHHHHHHHHHHH
Confidence 3567999998889888877743 2445554553 3211111000 00123454 45556 4433 456688899
Q ss_pred HHHHHHHHccCCCCCCeEEEEcCCCCCCCHHHHHHHHHHHHhcCCCCcEEEccCCCHHHHHHHHhhccEEEee
Q 016925 290 AFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRSVLTIFMHLFVFTMK 362 (380)
Q Consensus 290 A~~~l~~~~~~~~~~~~LvIvG~g~~~~~~~~~~~L~~la~~lgl~~~V~f~G~v~~~el~~ly~~a~vf~~~ 362 (380)
++.++.++. |+.++++.... ....+.+++...+.+..-.+.... .+-.+.|+.||+-+..
T Consensus 208 aa~~l~~~~----p~l~fvvp~a~-----~~~~~~i~~~~~~~~~~~~~~~~~----~~~~~~m~~ad~al~~ 267 (373)
T PF02684_consen 208 AAKLLKKQR----PDLQFVVPVAP-----EVHEELIEEILAEYPPDVSIVIIE----GESYDAMAAADAALAA 267 (373)
T ss_pred HHHHHHHhC----CCeEEEEecCC-----HHHHHHHHHHHHhhCCCCeEEEcC----CchHHHHHhCcchhhc
Confidence 999998875 99999988753 223344666666655544444432 2566889999985543
No 124
>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing. This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate.
Probab=95.10 E-value=0.59 Score=45.68 Aligned_cols=132 Identities=13% Similarity=0.063 Sum_probs=67.5
Q ss_pred cCCCEEEEcCHHHHHHHHHHhCCCCceEEecC-CCCCCCC---CCC-----CCCCCCCCCEE-EEEecCC--C---ccCh
Q 016925 220 SCADLAMVNSSWTQSHIEKLWGIPDRIKRVYP-PCDTSGL---QVL-----PLERSTEYPAI-ISVAQFR--P---EKAH 284 (380)
Q Consensus 220 ~~ad~ii~~S~~~~~~i~~~~~~~~k~~vi~~-gvd~~~~---~~~-----~~~~~~~~~~i-l~VGRl~--p---~K~~ 284 (380)
+-||..++.++..++.+.+..-.+.++.++=| ++|.-.. ... ...-..+++++ +.+-|-+ . .+.+
T Consensus 143 ~la~l~f~~t~~~~~~L~~eg~~~~~i~~tG~~~iD~l~~~~~~~~~~~~~~lgl~~~~~~vlvt~Hp~~~~~~~~~~~l 222 (365)
T TIGR03568 143 KLSHLHFVATEEYRQRVIQMGEDPDRVFNVGSPGLDNILSLDLLSKEELEEKLGIDLDKPYALVTFHPVTLEKESAEEQI 222 (365)
T ss_pred HHHhhccCCCHHHHHHHHHcCCCCCcEEEECCcHHHHHHhhhccCHHHHHHHhCCCCCCCEEEEEeCCCcccccCchHHH
Confidence 34567777777777766653322445655533 4442110 000 00001123553 4444432 3 3344
Q ss_pred HHHHHHHHHHHHHccCCCCCCeEEEEcCCCCCCCHHHHHHHHHHHHhcCCCCcEEEccCCCHHHHHHHHhhccEEEeec
Q 016925 285 PLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRSVLTIFMHLFVFTMKW 363 (380)
Q Consensus 285 d~li~A~~~l~~~~~~~~~~~~LvIvG~g~~~~~~~~~~~L~~la~~lgl~~~V~f~G~v~~~el~~ly~~a~vf~~~~ 363 (380)
..+++++..+ . .++.++.-..+ +.+....+.++++..+ .++|.+.+.++..++..+++.|++++-..
T Consensus 223 ~~li~~L~~~---~----~~~~vi~P~~~--p~~~~i~~~i~~~~~~---~~~v~l~~~l~~~~~l~Ll~~a~~vitdS 289 (365)
T TIGR03568 223 KELLKALDEL---N----KNYIFTYPNAD--AGSRIINEAIEEYVNE---HPNFRLFKSLGQERYLSLLKNADAVIGNS 289 (365)
T ss_pred HHHHHHHHHh---c----cCCEEEEeCCC--CCchHHHHHHHHHhcC---CCCEEEECCCChHHHHHHHHhCCEEEEcC
Confidence 4555544433 1 34433322221 1222334455555321 46899999999999999999999988543
No 125
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.
Probab=94.13 E-value=0.89 Score=44.14 Aligned_cols=134 Identities=15% Similarity=0.125 Sum_probs=75.9
Q ss_pred hcCCCEEEEcCHHHHHHHHHHhCCCCceEEecCC-CCCC-----CCC-CC---CCCCCCCCCEEEEEe-cCCC---ccCh
Q 016925 219 GSCADLAMVNSSWTQSHIEKLWGIPDRIKRVYPP-CDTS-----GLQ-VL---PLERSTEYPAIISVA-QFRP---EKAH 284 (380)
Q Consensus 219 ~~~ad~ii~~S~~~~~~i~~~~~~~~k~~vi~~g-vd~~-----~~~-~~---~~~~~~~~~~il~VG-Rl~p---~K~~ 284 (380)
-+-||.-+|.++..++.+.+..-.++++.++=++ +|.- ... .. +.....++++++... |.+. ..+.
T Consensus 120 ~~la~lhf~~t~~~~~~L~~~G~~~~rI~~vG~~~~D~l~~~~~~~~~~~~~~~i~~~~~~~~iLvt~H~~t~~~~~~~~ 199 (346)
T PF02350_consen 120 DKLAHLHFAPTEEARERLLQEGEPPERIFVVGNPGIDALLQNKEEIEEKYKNSGILQDAPKPYILVTLHPVTNEDNPERL 199 (346)
T ss_dssp HHH-SEEEESSHHHHHHHHHTT--GGGEEE---HHHHHHHHHHHTTCC-HHHHHHHHCTTSEEEEEE-S-CCCCTHH--H
T ss_pred hhhhhhhccCCHHHHHHHHhcCCCCCeEEEEChHHHHHHHHhHHHHhhhhhhHHHHhccCCCEEEEEeCcchhcCChHHH
Confidence 3568999999999999998864335677776443 3421 011 00 000012456665544 3332 3456
Q ss_pred HHHHHHHHHHHHHccCCCCCCeEEEEcCCCCCCCHHHHHHHHHHHHhcCCCCcEEEccCCCHHHHHHHHhhccEEEeech
Q 016925 285 PLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRSVLTIFMHLFVFTMKWQ 364 (380)
Q Consensus 285 d~li~A~~~l~~~~~~~~~~~~LvIvG~g~~~~~~~~~~~L~~la~~lgl~~~V~f~G~v~~~el~~ly~~a~vf~~~~~ 364 (380)
..+.+++..+.+. +++.+++.... +....+.+.+..+++ ++|.+..+++..+...+++.|++.+-..+
T Consensus 200 ~~i~~~l~~L~~~-----~~~~vi~~~hn----~p~~~~~i~~~l~~~---~~v~~~~~l~~~~~l~ll~~a~~vvgdSs 267 (346)
T PF02350_consen 200 EQILEALKALAER-----QNVPVIFPLHN----NPRGSDIIIEKLKKY---DNVRLIEPLGYEEYLSLLKNADLVVGDSS 267 (346)
T ss_dssp HHHHHHHHHHHHH-----TTEEEEEE--S-----HHHHHHHHHHHTT----TTEEEE----HHHHHHHHHHESEEEESSH
T ss_pred HHHHHHHHHHHhc-----CCCcEEEEecC----CchHHHHHHHHhccc---CCEEEECCCCHHHHHHHHhcceEEEEcCc
Confidence 7778888877664 68888888852 223445666666555 39999999999999999999999876443
No 126
>PF07429 Glyco_transf_56: 4-alpha-L-fucosyltransferase glycosyl transferase group 56; InterPro: IPR009993 This family contains the bacterial enzyme 4-alpha-L-fucosyltransferase (Fuc4NAc transferase) (approximately 360 residues long). This catalyses the synthesis of Fuc4NAc-ManNAcA-GlcNAc-PP-Und (lipid III) as part of the biosynthetic pathway of enterobacterial common antigen (ECA), a polysaccharide comprised of the trisaccharide repeat unit Fuc4NAc-ManNAcA-GlcNAc [].; GO: 0008417 fucosyltransferase activity, 0009246 enterobacterial common antigen biosynthetic process, 0009276 Gram-negative-bacterium-type cell wall
Probab=93.50 E-value=7.6 Score=37.43 Aligned_cols=151 Identities=12% Similarity=0.070 Sum_probs=95.7
Q ss_pred HHHHHHhcCCCEEEEcCHHHHHHHHHHhCCCCceEEecCCCCCCC-CCCCCCCCCCCCCEEEEEecC-CCccChHHHHHH
Q 016925 213 WMYGLVGSCADLAMVNSSWTQSHIEKLWGIPDRIKRVYPPCDTSG-LQVLPLERSTEYPAIISVAQF-RPEKAHPLQLEA 290 (380)
Q Consensus 213 ~l~~~~~~~ad~ii~~S~~~~~~i~~~~~~~~k~~vi~~gvd~~~-~~~~~~~~~~~~~~il~VGRl-~p~K~~d~li~A 290 (380)
.+-+.+-++...|++. +..-...++.++.... ..+|-|...+. ..........+++.-+.||+= +|.-||-.++++
T Consensus 129 ~lRr~aq~rvg~V~at-~GDl~~~~q~~~~~~~-~~lyfPt~m~~~~~~~~~~~~~~~~ltILvGNSgd~sNnHieaL~~ 206 (360)
T PF07429_consen 129 FLRRLAQKRVGHVFAT-RGDLAYFQQRYPRVPA-SLLYFPTRMDPALTLSEKNKKNKGKLTILVGNSGDPSNNHIEALEA 206 (360)
T ss_pred HHHHHHHhhcCeEEEE-cchHHHHHHHcCCCCc-eEEEcCCCCchhhhccccccCCCCceEEEEcCCCCCCccHHHHHHH
Confidence 3445555666777764 4555566777764222 24554433221 111111111235777888864 577778777776
Q ss_pred HHHHHHHccCCCCCCeEEEEcCCCCCCCHHHHHHHHHHHHhcCCCCcEEE-ccCCCHHHHHHHHhhccEEEe--echhhH
Q 016925 291 FSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEF-YKNLLYRSVLTIFMHLFVFTM--KWQLVY 367 (380)
Q Consensus 291 ~~~l~~~~~~~~~~~~LvIvG~g~~~~~~~~~~~L~~la~~lgl~~~V~f-~G~v~~~el~~ly~~a~vf~~--~~~~~~ 367 (380)
+.... ..+.+++|-=+.+ ..+++|.+++++.++++--.+++.. ..+.+-+|=.+++++||+.++ ..|...
T Consensus 207 L~~~~------~~~~kIivPLsYg-~~n~~Yi~~V~~~~~~lF~~~~~~iL~e~mpf~eYl~lL~~cDl~if~~~RQQgi 279 (360)
T PF07429_consen 207 LKQQF------GDDVKIIVPLSYG-ANNQAYIQQVIQAGKELFGAENFQILTEFMPFDEYLALLSRCDLGIFNHNRQQGI 279 (360)
T ss_pred HHHhc------CCCeEEEEECCCC-CchHHHHHHHHHHHHHhcCccceeEhhhhCCHHHHHHHHHhCCEEEEeechhhhH
Confidence 66532 2578866643332 2368899999999999866667765 678999999999999999665 667777
Q ss_pred HHHHH
Q 016925 368 DEFLK 372 (380)
Q Consensus 368 ~~~~~ 372 (380)
|.-.-
T Consensus 280 GnI~l 284 (360)
T PF07429_consen 280 GNICL 284 (360)
T ss_pred hHHHH
Confidence 76543
No 127
>PF04413 Glycos_transf_N: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); InterPro: IPR007507 This is a domain found in proteins that transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Proteins bearing this domain transfer UDP, ADP, GDP or CMP linked sugars. This region is flanked at the N terminus by a signal peptide and at the C terminus by a glycosyl transferase group 1 domain (IPR001296 from INTERPRO). The eukaryotic glycogen synthases may be distant members of this bacterial family [].; GO: 0005529 sugar binding, 0016740 transferase activity, 0005975 carbohydrate metabolic process; PDB: 2XCI_A 2XCU_B.
Probab=93.40 E-value=1.5 Score=38.62 Aligned_cols=39 Identities=18% Similarity=0.204 Sum_probs=27.0
Q ss_pred HHHHHHHhcCCCEEEEcCHHHHHHHHHHhCCCCceEEec
Q 016925 212 SWMYGLVGSCADLAMVNSSWTQSHIEKLWGIPDRIKRVY 250 (380)
Q Consensus 212 ~~l~~~~~~~ad~ii~~S~~~~~~i~~~~~~~~k~~vi~ 250 (380)
..+.+.+++..|.|++.|+..++.++++...++++.|.-
T Consensus 140 ~~~~r~~l~~f~~i~aqs~~da~r~~~lG~~~~~v~v~G 178 (186)
T PF04413_consen 140 PFLFRPLLSRFDRILAQSEADAERFRKLGAPPERVHVTG 178 (186)
T ss_dssp -HHHHHHGGG-SEEEESSHHHHHHHHTTT-S--SEEE--
T ss_pred HHHHHHHHHhCCEEEECCHHHHHHHHHcCCCcceEEEeC
Confidence 445677788999999999999999999765456777653
No 128
>COG0763 LpxB Lipid A disaccharide synthetase [Cell envelope biogenesis, outer membrane]
Probab=92.58 E-value=7.5 Score=37.89 Aligned_cols=125 Identities=10% Similarity=-0.034 Sum_probs=69.1
Q ss_pred HhcCCCEEEEcCHHHHHHHHHHhCCCCceEEecCCC-CCCCCCCC------CCC-CCCCCCEEEEEe-cCC-CccChHHH
Q 016925 218 VGSCADLAMVNSSWTQSHIEKLWGIPDRIKRVYPPC-DTSGLQVL------PLE-RSTEYPAIISVA-QFR-PEKAHPLQ 287 (380)
Q Consensus 218 ~~~~ad~ii~~S~~~~~~i~~~~~~~~k~~vi~~gv-d~~~~~~~------~~~-~~~~~~~il~VG-Rl~-p~K~~d~l 287 (380)
..+.+|.+++.=.|..+...+... ..+.|=+|. |...+.+. ... +..++...+..| |-+ =......+
T Consensus 133 i~~~~D~lLailPFE~~~y~k~g~---~~~yVGHpl~d~i~~~~~r~~ar~~l~~~~~~~~lalLPGSR~sEI~rl~~~f 209 (381)
T COG0763 133 IAKYVDHLLAILPFEPAFYDKFGL---PCTYVGHPLADEIPLLPDREAAREKLGIDADEKTLALLPGSRRSEIRRLLPPF 209 (381)
T ss_pred HHHHhhHeeeecCCCHHHHHhcCC---CeEEeCChhhhhccccccHHHHHHHhCCCCCCCeEEEecCCcHHHHHHHHHHH
Confidence 446789999999999998887543 233333332 33222221 011 112334567777 333 24556677
Q ss_pred HHHHHHHHHHccCCCCCCeEEEEcCCCCCCCHHHHHHHHHHHHhcCCCCcEEEccCCCHHHHHHHHhhccE
Q 016925 288 LEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRSVLTIFMHLFV 358 (380)
Q Consensus 288 i~A~~~l~~~~~~~~~~~~LvIvG~g~~~~~~~~~~~L~~la~~lgl~~~V~f~G~v~~~el~~ly~~a~v 358 (380)
++|+..++++. |+.++++-=.. ..+.....+.++.-+..-.+.+. +.+..+.+..||+
T Consensus 210 ~~a~~~l~~~~----~~~~~vlp~~~-----~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~a~~~aD~ 267 (381)
T COG0763 210 VQAAQELKARY----PDLKFVLPLVN-----AKYRRIIEEALKWEVAGLSLILI----DGEKRKAFAAADA 267 (381)
T ss_pred HHHHHHHHhhC----CCceEEEecCc-----HHHHHHHHHHhhccccCceEEec----CchHHHHHHHhhH
Confidence 77888887654 99999887643 22333333333332221223333 3466788888887
No 129
>PF13844 Glyco_transf_41: Glycosyl transferase family 41; PDB: 3PE4_C 3PE3_D 3TAX_C 2XGO_A 2JLB_B 2XGM_A 2VSY_B 2XGS_B 2VSN_A.
Probab=91.76 E-value=1.3 Score=44.56 Aligned_cols=83 Identities=16% Similarity=0.098 Sum_probs=60.5
Q ss_pred CEEEEEecCCCccChHHHHHHHHHHHHHccCCCCCCeEEEEcCCCCCCCHHHHHHHHHHHHhcCCC-CcEEEccCCCHHH
Q 016925 270 PAIISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVD-GNVEFYKNLLYRS 348 (380)
Q Consensus 270 ~~il~VGRl~p~K~~d~li~A~~~l~~~~~~~~~~~~LvIvG~g~~~~~~~~~~~L~~la~~lgl~-~~V~f~G~v~~~e 348 (380)
..++|.+==...|=.+..+++|+.+.++. |+.+|++...+. .. .+.+++.+++.|++ ++|.|.+..+.+|
T Consensus 284 d~vvF~~fn~~~KI~p~~l~~W~~IL~~v----P~S~L~L~~~~~---~~--~~~l~~~~~~~Gv~~~Ri~f~~~~~~~e 354 (468)
T PF13844_consen 284 DAVVFGSFNNLFKISPETLDLWARILKAV----PNSRLWLLRFPA---SG--EARLRRRFAAHGVDPDRIIFSPVAPREE 354 (468)
T ss_dssp SSEEEEE-S-GGG--HHHHHHHHHHHHHS----TTEEEEEEETST---TH--HHHHHHHHHHTTS-GGGEEEEE---HHH
T ss_pred CceEEEecCccccCCHHHHHHHHHHHHhC----CCcEEEEeeCCH---HH--HHHHHHHHHHcCCChhhEEEcCCCCHHH
Confidence 35666665667899999999999999986 999999887542 22 36899999999998 8899999888888
Q ss_pred HHHHHhhccEEEe
Q 016925 349 VLTIFMHLFVFTM 361 (380)
Q Consensus 349 l~~ly~~a~vf~~ 361 (380)
--..|+.+|+++=
T Consensus 355 hl~~~~~~DI~LD 367 (468)
T PF13844_consen 355 HLRRYQLADICLD 367 (468)
T ss_dssp HHHHGGG-SEEE-
T ss_pred HHHHhhhCCEEee
Confidence 8889999999873
No 130
>PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=88.97 E-value=12 Score=39.07 Aligned_cols=125 Identities=10% Similarity=0.013 Sum_probs=67.2
Q ss_pred hcCCCEEEEcCHHHHHHHHHHhCCCCceEEecCCC-CCCCCCCCC------CCCCCCCCEE-EEEe-cCC-CccChHHHH
Q 016925 219 GSCADLAMVNSSWTQSHIEKLWGIPDRIKRVYPPC-DTSGLQVLP------LERSTEYPAI-ISVA-QFR-PEKAHPLQL 288 (380)
Q Consensus 219 ~~~ad~ii~~S~~~~~~i~~~~~~~~k~~vi~~gv-d~~~~~~~~------~~~~~~~~~i-l~VG-Rl~-p~K~~d~li 288 (380)
.+.+|.++|.=.|+++..++. |. +++.|=+|. |.-...+.. ....++++.+ +.-| |-. =.+....++
T Consensus 359 ~k~vD~ll~IfPFE~~~y~~~-gv--~v~yVGHPL~d~i~~~~~~~~~r~~lgl~~~~~iIaLLPGSR~~EI~rllPv~l 435 (608)
T PRK01021 359 EKYLDLLLLILPFEQNLFKDS-PL--RTVYLGHPLVETISSFSPNLSWKEQLHLPSDKPIVAAFPGSRRGDILRNLTIQV 435 (608)
T ss_pred HHHhhhheecCccCHHHHHhc-CC--CeEEECCcHHhhcccCCCHHHHHHHcCCCCCCCEEEEECCCCHHHHHHHHHHHH
Confidence 356799999988999988774 32 444454443 432111110 0011234444 5555 443 345566677
Q ss_pred HHHH--HHHHHccCCCCCCeEEEEcCCCCCCCHHHHHHHHHHHHhcCCCCcEEEc-cCCCHHHHHHHHhhccEEEeec
Q 016925 289 EAFS--VALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFY-KNLLYRSVLTIFMHLFVFTMKW 363 (380)
Q Consensus 289 ~A~~--~l~~~~~~~~~~~~LvIvG~g~~~~~~~~~~~L~~la~~lgl~~~V~f~-G~v~~~el~~ly~~a~vf~~~~ 363 (380)
+|+. .+. ++.++++.... ..+.+.+++..++.++ -.+.+. +. +-.+++++||+.+...
T Consensus 436 ~aa~~~~l~-------~~l~fvvp~a~-----~~~~~~i~~~~~~~~~-~~~~ii~~~----~~~~~m~aaD~aLaaS 496 (608)
T PRK01021 436 QAFLASSLA-------STHQLLVSSAN-----PKYDHLILEVLQQEGC-LHSHIVPSQ----FRYELMRECDCALAKC 496 (608)
T ss_pred HHHHHHHhc-------cCeEEEEecCc-----hhhHHHHHHHHhhcCC-CCeEEecCc----chHHHHHhcCeeeecC
Confidence 7776 332 46778775432 2234667776654331 123332 32 2358999999966543
No 131
>PF08660 Alg14: Oligosaccharide biosynthesis protein Alg14 like; InterPro: IPR013969 Alg14 is involved dolichol-linked oligosaccharide biosynthesis and anchors the catalytic subunit Alg13 to the ER membrane [].
Probab=88.90 E-value=11 Score=32.47 Aligned_cols=111 Identities=15% Similarity=0.196 Sum_probs=52.1
Q ss_pred CCChhHHHHHHHHHHHHhCCCceEEEEcCCCCCChhhHHHHHHhhcCccccCCCeEEEeccccccccCCCCccceehhhH
Q 016925 47 GGGGERVLWCAVKAIQEESPDLDCIVYTGDHDAFPDSLLARAVDRFGVELLHPPKVVHLYRRKWIEESTYPRFTMIGQSF 126 (380)
Q Consensus 47 ~GG~ervl~~la~~L~~~g~~~~v~v~t~~~~~~~~~~~~~~~~~~g~~l~~~v~~v~l~~~~~~~~~~~~~~~~~~~~~ 126 (380)
+||--..+..+++.+.....+++.+++|...+...+. .++.++..+. ...+...++.+.+..+. .......+
T Consensus 7 sGGHt~eml~L~~~~~~~~~~~~~~ivt~~d~~S~~k-~~~~~~~~~~----~~~~~~~~r~r~v~q~~---~~~~~~~l 78 (170)
T PF08660_consen 7 SGGHTAEMLRLLKALDNDRYQPRTYIVTEGDKQSRSK-AEQLEKSSSK----RHKILEIPRAREVGQSY---LTSIFTTL 78 (170)
T ss_pred CcHHHHHHHHHHHHhhhhcCCCcEEEEEcCCcccHHH-HHHHHHhccc----cceeeccceEEEechhh---HhhHHHHH
Confidence 4677777888888884433456666666443222211 1222221110 00112222211111111 11123333
Q ss_pred hHHHHHHHHHHhcCCcEEEeCCCchhhHHH---HhHh------CCcEEE
Q 016925 127 GSVYLSWEALCKFTPLYYFDTSGYAFTYPL---ARIF------GCRVIC 166 (380)
Q Consensus 127 ~~~~~~~~~l~~~~pDi~~~~~~~~~~~~l---~~~~------~~p~v~ 166 (380)
..++.+...+.+.+||+++++.. +.++|+ ++.. ++++|+
T Consensus 79 ~~~~~~~~il~r~rPdvii~nGp-g~~vp~~~~~~l~~~~~~~~~kiIy 126 (170)
T PF08660_consen 79 RAFLQSLRILRRERPDVIISNGP-GTCVPVCLAAKLLRLLGLRGSKIIY 126 (170)
T ss_pred HHHHHHHHHHHHhCCCEEEEcCC-ceeeHHHHHHHHHHHhhccCCcEEE
Confidence 34455666788899998876543 334552 3445 677665
No 132
>COG1817 Uncharacterized protein conserved in archaea [Function unknown]
Probab=86.40 E-value=21 Score=33.95 Aligned_cols=142 Identities=12% Similarity=0.150 Sum_probs=76.8
Q ss_pred hhHHHHHHHHHHHHhCCCceEEEEcCCCCCChhhHHHHHHhhcCccccCCCeEEEeccccccccCCCCccceehhhHh--
Q 016925 50 GERVLWCAVKAIQEESPDLDCIVYTGDHDAFPDSLLARAVDRFGVELLHPPKVVHLYRRKWIEESTYPRFTMIGQSFG-- 127 (380)
Q Consensus 50 ~ervl~~la~~L~~~g~~~~v~v~t~~~~~~~~~~~~~~~~~~g~~l~~~v~~v~l~~~~~~~~~~~~~~~~~~~~~~-- 127 (380)
-.+..-+++..|+++| |+|.+-+.+.+. +.+ +-+.||++. ..+++... ..+..+.+.
T Consensus 12 hvhfFk~lI~elekkG--~ev~iT~rd~~~----v~~-LLd~ygf~~------~~Igk~g~--------~tl~~Kl~~~~ 70 (346)
T COG1817 12 HVHFFKNLIWELEKKG--HEVLITCRDFGV----VTE-LLDLYGFPY------KSIGKHGG--------VTLKEKLLESA 70 (346)
T ss_pred hhhHHHHHHHHHHhCC--eEEEEEEeecCc----HHH-HHHHhCCCe------EeecccCC--------ccHHHHHHHHH
Confidence 3467789999999999 777665544321 222 223467643 33333110 011101111
Q ss_pred -HHHHHHHHHHhcCCcEEEeCCCchhhHH-HHhHhCCcEEEEEeCCcchhhHHHhhhccccccCCCccccccchhhhhHH
Q 016925 128 -SVYLSWEALCKFTPLYYFDTSGYAFTYP-LARIFGCRVICYTHYPTISLDMISRVREGSSMYNNNASIAQSNWLSQCKI 205 (380)
Q Consensus 128 -~~~~~~~~l~~~~pDi~~~~~~~~~~~~-l~~~~~~p~v~~~H~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (380)
......+...+++||+.+.-.+ + -+| +++..++|.+.....++..
T Consensus 71 eR~~~L~ki~~~~kpdv~i~~~s-~-~l~rvafgLg~psIi~~D~ehA~------------------------------- 117 (346)
T COG1817 71 ERVYKLSKIIAEFKPDVAIGKHS-P-ELPRVAFGLGIPSIIFVDNEHAE------------------------------- 117 (346)
T ss_pred HHHHHHHHHHhhcCCceEeecCC-c-chhhHHhhcCCceEEecCChhHH-------------------------------
Confidence 1112234568899998664222 1 123 4556688888765422210
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEcCHHHHHHHHHHhCCCCceEEecCCC
Q 016925 206 VYYTFFSWMYGLVGSCADLAMVNSSWTQSHIEKLWGIPDRIKRVYPPC 253 (380)
Q Consensus 206 ~~~~~~~~l~~~~~~~ad~ii~~S~~~~~~i~~~~~~~~k~~vi~~gv 253 (380)
.-++.....||.+++.+..-.+.+++....+.+ .+-|||+
T Consensus 118 -------~qnkl~~Pla~~ii~P~~~~~~~~~~~G~~p~~-i~~~~gi 157 (346)
T COG1817 118 -------AQNKLTLPLADVIITPEAIDEEELLDFGADPNK-ISGYNGI 157 (346)
T ss_pred -------HHhhcchhhhhheecccccchHHHHHhCCCccc-eecccce
Confidence 012334467899999998888888875443333 3567775
No 133
>KOG3742 consensus Glycogen synthase [Carbohydrate transport and metabolism]
Probab=83.52 E-value=1 Score=44.37 Aligned_cols=82 Identities=10% Similarity=0.009 Sum_probs=58.1
Q ss_pred HHHHHhcCCCEEEEcCHHHHHHHHHHhCCCCceEEecCCCCCCCCCCC---------CCC----------------CCCC
Q 016925 214 MYGLVGSCADLAMVNSSWTQSHIEKLWGIPDRIKRVYPPCDTSGLQVL---------PLE----------------RSTE 268 (380)
Q Consensus 214 l~~~~~~~ad~ii~~S~~~~~~i~~~~~~~~k~~vi~~gvd~~~~~~~---------~~~----------------~~~~ 268 (380)
+++.....|+.+-|+|+-|+-+...+...+.. .+.+||.+..+|... ..+ .-++
T Consensus 245 ~ERaa~h~AhVFTTVSeITa~EAeHlLkRKPD-~itPNGLNV~KFsA~HEFQNLHA~~KekIndFVRGHF~GhlDFdLdk 323 (692)
T KOG3742|consen 245 LERAAAHTAHVFTTVSEITALEAEHLLKRKPD-VITPNGLNVKKFSAVHEFQNLHAQKKEKINDFVRGHFHGHLDFDLDK 323 (692)
T ss_pred HHHHhhhhhhhhhhHHHHHHHHHHHHHhcCCC-eeCCCCcceeehhHHHHHHHHHHHHHHHHHHHhhhhccccccccccc
Confidence 56666778888889999998887776654223 357889887766531 000 0133
Q ss_pred CCEEEEEecCC-CccChHHHHHHHHHHHH
Q 016925 269 YPAIISVAQFR-PEKAHPLQLEAFSVALR 296 (380)
Q Consensus 269 ~~~il~VGRl~-p~K~~d~li~A~~~l~~ 296 (380)
.-|+...||++ ..||-|..|+|+++|--
T Consensus 324 TlyfFiAGRYEf~NKGaDmFiEsLaRLN~ 352 (692)
T KOG3742|consen 324 TLYFFIAGRYEFSNKGADMFIESLARLNY 352 (692)
T ss_pred eEEEEEeeeeeeccCchHHHHHHHHHhHH
Confidence 45778889999 69999999999999743
No 134
>PF00862 Sucrose_synth: Sucrose synthase; InterPro: IPR000368 Sucrose synthases catalyse the synthesis of sucrose 2.4.1.13 from EC in the following reaction: UDP-glucose + D-fructose = UDP + sucrose This family includes the bulk of the sucrose synthase protein. However the carboxyl terminal region of the sucrose synthases belongs to the glycosyl transferase family IPR001296 from INTERPRO. This enzyme is found mainly in plants but also appears in bacteria.; GO: 0005985 sucrose metabolic process; PDB: 2R60_A 2R66_A 2R68_A 3S27_G 3S29_A 3S28_A.
Probab=80.59 E-value=13 Score=37.71 Aligned_cols=34 Identities=15% Similarity=0.064 Sum_probs=18.3
Q ss_pred hcCCcEEEeCCCchhhHH--HHhHhCCcEEEEEeCC
Q 016925 138 KFTPLYYFDTSGYAFTYP--LARIFGCRVICYTHYP 171 (380)
Q Consensus 138 ~~~pDi~~~~~~~~~~~~--l~~~~~~p~v~~~H~p 171 (380)
..+||+++.+.+-++..+ ++...++|.+.+-|..
T Consensus 399 ~~~PdlI~GnYsDgnlvA~LLs~~lgv~~~~iaHsL 434 (550)
T PF00862_consen 399 QGKPDLIIGNYSDGNLVASLLSRKLGVTQCFIAHSL 434 (550)
T ss_dssp TS--SEEEEEHHHHHHHHHHHHHHHT-EEEEE-SS-
T ss_pred CCCCcEEEeccCcchHHHHHHHhhcCCceehhhhcc
Confidence 467998775554443333 3456789999888854
No 135
>TIGR03646 YtoQ_fam YtoQ family protein. Members of this family are uncharacterized proteins, including YtoQ from Bacillus subtilis. This family shows some sequence similarity to a family of nucleoside 2-deoxyribosyltransferases (COG3613 as iterated through CDD), but sufficiently remote that PSI-BLAST starting from YtoQ and exploring outwards does not discover the relationship.
Probab=79.54 E-value=7 Score=32.02 Aligned_cols=59 Identities=8% Similarity=0.142 Sum_probs=44.2
Q ss_pred eEEEEcCCCCCCCHHHHHHHHHHHHhcCCCCcEEEccCCCHHHH------------------------------HHHHhh
Q 016925 306 RLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRSV------------------------------LTIFMH 355 (380)
Q Consensus 306 ~LvIvG~g~~~~~~~~~~~L~~la~~lgl~~~V~f~G~v~~~el------------------------------~~ly~~ 355 (380)
+..+.|.- ..++++++++-+++.+|+ |.|.+.+++.+- ..++.+
T Consensus 2 ~VYLsGEI----HtdWRe~I~~ga~~~~L~--v~F~~pvtdH~aSD~~G~~iLG~e~~~fw~D~k~a~iNaiRT~~li~~ 75 (144)
T TIGR03646 2 TVYLAGEI----HTDWREEIKEGAKSKNLP--IVFSGPVTDHEASDNIGEDILGKQPSNFWRDDAAASINNIRTRKLIEK 75 (144)
T ss_pred eEEEcCcc----cchHHHHHHHHHHHcCCC--eEEecCCCCCcchhhhhHHHhCCCCccccccccccchhhHHHHHHHhh
Confidence 45667753 457899999999999997 999988755432 357889
Q ss_pred ccEEEeechhhHHHH
Q 016925 356 LFVFTMKWQLVYDEF 370 (380)
Q Consensus 356 a~vf~~~~~~~~~~~ 370 (380)
||+.+..+.|.|-.+
T Consensus 76 aDvvVvrFGekYKQW 90 (144)
T TIGR03646 76 ADVVIALFGEKYKQW 90 (144)
T ss_pred CCEEEEEechHHHHH
Confidence 999998877766543
No 136
>TIGR03609 S_layer_CsaB polysaccharide pyruvyl transferase CsaB. The CsaB protein (cell surface anchoring B) of Bacillus anthracis adds a pyruvoyl group to peptidoglycan-associated polysaccharide. This addition is required for proteins with an S-layer homology domain (pfam00395) to bind. Within the larger group of proteins described by Pfam model pfam04230, this model represents a distinct clade that nearly exactly follows the phylogenetic distribution of the S-layer homology domain (pfam00395).
Probab=79.22 E-value=56 Score=30.58 Aligned_cols=133 Identities=14% Similarity=0.036 Sum_probs=68.8
Q ss_pred HHHHHhcCCCEEEEcCHHHHHHHHHHhCCCCceEEecCCCCCCCCCCCCCCCCCCCCEEEEEecCCC---ccChHHHHHH
Q 016925 214 MYGLVGSCADLAMVNSSWTQSHIEKLWGIPDRIKRVYPPCDTSGLQVLPLERSTEYPAIISVAQFRP---EKAHPLQLEA 290 (380)
Q Consensus 214 l~~~~~~~ad~ii~~S~~~~~~i~~~~~~~~k~~vi~~gvd~~~~~~~~~~~~~~~~~il~VGRl~p---~K~~d~li~A 290 (380)
+.+.+++.+|.+.+=.+.+.+.+++ ++. ++.+..-++-.-.....+.....++++++..-|-.+ ++..+.+.++
T Consensus 120 ~~~~~l~~~~~i~vRD~~S~~~l~~-~g~--~i~~~~D~a~~l~~~~~~~~~~~~~~~i~i~~r~~~~~~~~~~~~l~~~ 196 (298)
T TIGR03609 120 LVRRVLRGCRAISVRDAASYRLLKR-LGI--PAELAADPVWLLPPEPWPGGEPLPEPVIVVSLRPWPLLDVSRLLRLLRA 196 (298)
T ss_pred HHHHHHccCCEEEEeCHHHHHHHHH-hCC--CceEeCChhhhCCCCcccccccCCCCeEEEEECCCCcCCHHHHHHHHHH
Confidence 3456678899988877777787766 443 344433221100000000111113455554434321 2234566677
Q ss_pred HHHHHHHccCCCCCCeEEEEcCCCCCCCHHHHHHHHHHHHhcCCCCcEEEccCCCHHHHHHHHhhccEEE
Q 016925 291 FSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRSVLTIFMHLFVFT 360 (380)
Q Consensus 291 ~~~l~~~~~~~~~~~~LvIvG~g~~~~~~~~~~~L~~la~~lgl~~~V~f~G~v~~~el~~ly~~a~vf~ 360 (380)
+..+.++ .+.+++++.... ..+. +..+++.+.+.-.+.|. ...+.+|+.+++++|++++
T Consensus 197 l~~l~~~-----~g~~v~~i~~~~-~~D~---~~~~~l~~~~~~~~~i~--~~~~~~e~~~~i~~~~~vI 255 (298)
T TIGR03609 197 LDRLQRD-----TGAFVLFLPFQQ-PQDL---PLARALRDQLLGPAEVL--SPLDPEELLGLFASARLVI 255 (298)
T ss_pred HHHHHHh-----hCCeEEEEeCCc-chhH---HHHHHHHHhcCCCcEEE--ecCCHHHHHHHHhhCCEEE
Confidence 7766554 366766655321 1222 23344444443233443 5557789999999999755
No 137
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=78.90 E-value=13 Score=34.56 Aligned_cols=66 Identities=9% Similarity=0.034 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHccCCCCCCeEEEEcCCCCCCCHHHHHHHHHHHHhcCCCCcEEEccCCCHHHHHHHHhhccEEEee
Q 016925 285 PLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRSVLTIFMHLFVFTMK 362 (380)
Q Consensus 285 d~li~A~~~l~~~~~~~~~~~~LvIvG~g~~~~~~~~~~~L~~la~~lgl~~~V~f~G~v~~~el~~ly~~a~vf~~~ 362 (380)
+...+....+.+ .+.++++.|+.. +. +..+++.+..+-...+.+.|..+-.|+..++++||+++..
T Consensus 140 ~~~~~l~~~l~~------~~~~ivl~g~~~---e~---~~~~~i~~~~~~~~~~~~~~~~~l~e~~~li~~~~l~I~~ 205 (279)
T cd03789 140 ERFAALADRLLA------RGARVVLTGGPA---ER---ELAEEIAAALGGPRVVNLAGKTSLRELAALLARADLVVTN 205 (279)
T ss_pred HHHHHHHHHHHH------CCCEEEEEechh---hH---HHHHHHHHhcCCCccccCcCCCCHHHHHHHHHhCCEEEee
Confidence 444555555543 378999999642 22 3344444444323446678888889999999999998863
No 138
>PF06925 MGDG_synth: Monogalactosyldiacylglycerol (MGDG) synthase; InterPro: IPR009695 This entry represents a conserved region of approximately 180 residues found towirds the N terminus of a number of plant and bacterial diacylglycerol glucosyltransferases, such as monogalactosyldiacylglycerol synthase [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009247 glycolipid biosynthetic process
Probab=78.37 E-value=12 Score=32.01 Aligned_cols=29 Identities=28% Similarity=0.358 Sum_probs=23.4
Q ss_pred cCCCEEEEcCHHHHHHHHHHhCC-CCceEEe
Q 016925 220 SCADLAMVNSSWTQSHIEKLWGI-PDRIKRV 249 (380)
Q Consensus 220 ~~ad~ii~~S~~~~~~i~~~~~~-~~k~~vi 249 (380)
+.+|..++.|+.+++++.+. |. ++++.+.
T Consensus 136 ~~~D~y~Vase~~~~~l~~~-Gi~~~~I~vt 165 (169)
T PF06925_consen 136 PGVDRYFVASEEVKEELIER-GIPPERIHVT 165 (169)
T ss_pred CCCCEEEECCHHHHHHHHHc-CCChhHEEEe
Confidence 57899999999999999984 54 5677654
No 139
>PF11997 DUF3492: Domain of unknown function (DUF3492); InterPro: IPR022622 This domain is functionally uncharacterised and is found in bacteria, archaea and eukaryotes. It is typically between 259 to 282 amino acids in length. This region is found N-terminal PF00534 from PFAM. There are two conserved sequence motifs: GGVS and EHGIY.
Probab=78.29 E-value=8.9 Score=35.77 Aligned_cols=86 Identities=17% Similarity=0.123 Sum_probs=50.0
Q ss_pred cEEEe-CCCchhhHH-HHh-HhCCcEEEEEeCCcchhhHHHhhhccccccCCCccccccchhhhhHHHHHHHHHHHHHHH
Q 016925 142 LYYFD-TSGYAFTYP-LAR-IFGCRVICYTHYPTISLDMISRVREGSSMYNNNASIAQSNWLSQCKIVYYTFFSWMYGLV 218 (380)
Q Consensus 142 Di~~~-~~~~~~~~~-l~~-~~~~p~v~~~H~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 218 (380)
|++|+ +.|++.... +++ ..++|.+.+-|+-... +|......-.++.. ....|.++.++|..+-+.+
T Consensus 174 dvyHsvstGyAgl~g~~~k~~~g~P~lLTEHGIY~R--------ER~~ei~~a~w~~~---~~~~r~~wi~~f~~l~~~~ 242 (268)
T PF11997_consen 174 DVYHSVSTGYAGLLGALAKYRYGRPFLLTEHGIYTR--------EREIEILQADWIWE---SPYVRDLWIRFFESLSRLA 242 (268)
T ss_pred CEEecCCccHHHHHHHHHHHHhCCCEEEecCCccHH--------HHHHHHHhcccccc---hHHHHHHHHHHHHHHHHHH
Confidence 77774 334443222 333 5799999999965421 11111111111100 2345566667888888888
Q ss_pred hcCCCEEEEcCHHHHHHHHH
Q 016925 219 GSCADLAMVNSSWTQSHIEK 238 (380)
Q Consensus 219 ~~~ad~ii~~S~~~~~~i~~ 238 (380)
.+.||.|++.+++.++.-++
T Consensus 243 Y~~Ad~I~~l~~~n~~~q~~ 262 (268)
T PF11997_consen 243 YRAADRITPLYEYNREWQIE 262 (268)
T ss_pred HHhhCeecccchhhHHHHHH
Confidence 99999999998876665333
No 140
>COG0859 RfaF ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=77.85 E-value=67 Score=30.78 Aligned_cols=80 Identities=14% Similarity=0.103 Sum_probs=51.3
Q ss_pred CE-EEEEe-cCCCccChHHHHHHHHHHHHHccCCCCCCeEEEEcCCCCCCCHHHHHHHHHHHHhcCCCCcEEEccCCCHH
Q 016925 270 PA-IISVA-QFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYR 347 (380)
Q Consensus 270 ~~-il~VG-Rl~p~K~~d~li~A~~~l~~~~~~~~~~~~LvIvG~g~~~~~~~~~~~L~~la~~lgl~~~V~f~G~v~~~ 347 (380)
++ ++..| .-.+.|+.. .+-|+.+.+...+ ..+++++.|+.. ..+..+++++..+ +.+.+.|..+-.
T Consensus 176 ~~i~i~pg~s~~~~K~wp--~e~~~~l~~~l~~--~~~~Vvl~g~~~------e~e~~~~i~~~~~--~~~~l~~k~sL~ 243 (334)
T COG0859 176 PYIVINPGASRGSAKRWP--LEHYAELAELLIA--KGYQVVLFGGPD------EEERAEEIAKGLP--NAVILAGKTSLE 243 (334)
T ss_pred CeEEEeccccccccCCCC--HHHHHHHHHHHHH--CCCEEEEecChH------HHHHHHHHHHhcC--CccccCCCCCHH
Confidence 44 56667 666888876 2333333332211 348999999751 2345555555543 334488999999
Q ss_pred HHHHHHhhccEEEe
Q 016925 348 SVLTIFMHLFVFTM 361 (380)
Q Consensus 348 el~~ly~~a~vf~~ 361 (380)
|+..+++.||+++-
T Consensus 244 e~~~li~~a~l~I~ 257 (334)
T COG0859 244 ELAALIAGADLVIG 257 (334)
T ss_pred HHHHHHhcCCEEEc
Confidence 99999999999874
No 141
>PF11071 DUF2872: Protein of unknown function (DUF2872); InterPro: IPR019884 This entry represents a family of uncharacterised proteins, including YtoQ from Bacillus subtilis. This family shows some sequence similarity to a family of nucleoside 2-deoxyribosyltransferases (COG3613 as iterated through CDD), but sufficiently remote that PSI-BLAST starting from YtoQ and exploring outwards does not discover the relationship.
Probab=77.61 E-value=6.6 Score=32.11 Aligned_cols=51 Identities=14% Similarity=0.217 Sum_probs=39.3
Q ss_pred CHHHHHHHHHHHHhcCCCCcEEEccCCCHHHH------------------------------HHHHhhccEEEeechhhH
Q 016925 318 DEERLQSLKDKSIELKVDGNVEFYKNLLYRSV------------------------------LTIFMHLFVFTMKWQLVY 367 (380)
Q Consensus 318 ~~~~~~~L~~la~~lgl~~~V~f~G~v~~~el------------------------------~~ly~~a~vf~~~~~~~~ 367 (380)
..++++++++.+++.||+ |.|.|.+++.+- ..++.+||+.+..+.|.|
T Consensus 7 HtdWRe~I~~ga~~~~L~--v~F~~PvtdH~~SD~~G~~iLG~e~~~fw~D~k~a~iN~iRT~~li~~aDvVVvrFGekY 84 (141)
T PF11071_consen 7 HTDWREEIKEGAKAAGLP--VEFTSPVTDHEASDDCGVDILGEEPNKFWRDHKGAKINAIRTRTLIEKADVVVVRFGEKY 84 (141)
T ss_pred cchHHHHHHHHHHHcCCC--eEEecCCCCchhhhhhhHHHhCCCCccccccchhhhhhHHHHHHHHhhCCEEEEEechHH
Confidence 357899999999999987 999998765442 247888999998877766
Q ss_pred HHH
Q 016925 368 DEF 370 (380)
Q Consensus 368 ~~~ 370 (380)
-.+
T Consensus 85 KQW 87 (141)
T PF11071_consen 85 KQW 87 (141)
T ss_pred HHH
Confidence 443
No 142
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional
Probab=75.24 E-value=25 Score=33.92 Aligned_cols=81 Identities=6% Similarity=-0.007 Sum_probs=49.5
Q ss_pred EEEEEecCCCccChH--HHHHHHHHHHHHccCCCCCCeEEEEcCCCCCCCHHHHHHHHHHHHhcCCCCcEEEccCCCHHH
Q 016925 271 AIISVAQFRPEKAHP--LQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRS 348 (380)
Q Consensus 271 ~il~VGRl~p~K~~d--~li~A~~~l~~~~~~~~~~~~LvIvG~g~~~~~~~~~~~L~~la~~lgl~~~V~f~G~v~~~e 348 (380)
.++..|-=.+.|... ...+....+.+ .+.++++.|+..+ +..+..++.++...-...+.+.|..+=.|
T Consensus 186 i~i~pga~~~~K~Wp~e~fa~l~~~L~~------~~~~vvl~ggp~e----~e~~~~~~i~~~~~~~~~~~l~g~~sL~e 255 (352)
T PRK10422 186 VVIQPTARQIFKCWDNDKFSAVIDALQA------RGYEVVLTSGPDK----DDLACVNEIAQGCQTPPVTALAGKTTFPE 255 (352)
T ss_pred EEEecCCCccccCCCHHHHHHHHHHHHH------CCCeEEEEcCCCh----HHHHHHHHHHHhcCCCccccccCCCCHHH
Confidence 446666555677765 33344444422 4678898886421 11222344443333333466889888899
Q ss_pred HHHHHhhccEEEe
Q 016925 349 VLTIFMHLFVFTM 361 (380)
Q Consensus 349 l~~ly~~a~vf~~ 361 (380)
+..+++.|++|+-
T Consensus 256 l~ali~~a~l~v~ 268 (352)
T PRK10422 256 LGALIDHAQLFIG 268 (352)
T ss_pred HHHHHHhCCEEEe
Confidence 9999999999985
No 143
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=73.72 E-value=25 Score=33.59 Aligned_cols=80 Identities=14% Similarity=0.120 Sum_probs=48.4
Q ss_pred CCEE-EEEec-CCCccChH--HHHHHHHHHHHHccCCCCCCeEEEEcCCCCCCCHHHHHHHHHHHHhcCCCCcEEEccCC
Q 016925 269 YPAI-ISVAQ-FRPEKAHP--LQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNL 344 (380)
Q Consensus 269 ~~~i-l~VGR-l~p~K~~d--~li~A~~~l~~~~~~~~~~~~LvIvG~g~~~~~~~~~~~L~~la~~lgl~~~V~f~G~v 344 (380)
+++| +..|. ..+.|... ...+....+.+ .+.++++.|+.. +.+. .+++.+..+ ...+.+.|..
T Consensus 174 ~~~i~i~pga~~~~~K~Wp~e~~~~li~~l~~------~~~~ivl~G~~~---e~~~---~~~i~~~~~-~~~~~l~g~~ 240 (334)
T TIGR02195 174 RPIIAFCPGAEFGPAKRWPHEHYAELAKRLID------QGYQVVLFGSAK---DHPA---GNEIEALLP-GELRNLAGET 240 (334)
T ss_pred CCEEEEcCCCCCCccCCCCHHHHHHHHHHHHH------CCCEEEEEEChh---hHHH---HHHHHHhCC-cccccCCCCC
Confidence 3444 55554 45777766 44444444432 357899999752 2222 233333322 1234478988
Q ss_pred CHHHHHHHHhhccEEEe
Q 016925 345 LYRSVLTIFMHLFVFTM 361 (380)
Q Consensus 345 ~~~el~~ly~~a~vf~~ 361 (380)
+=.|+..+++.|++++.
T Consensus 241 sL~el~ali~~a~l~I~ 257 (334)
T TIGR02195 241 SLDEAVDLIALAKAVVT 257 (334)
T ss_pred CHHHHHHHHHhCCEEEe
Confidence 88999999999999985
No 144
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=73.56 E-value=25 Score=29.15 Aligned_cols=99 Identities=11% Similarity=-0.041 Sum_probs=57.5
Q ss_pred eEEecCCCCCCC--CCCCCCCCCCCCCEEEEEecCCCccChHHHHHHHHHHHHHccCCCCCCeEEEEcCCCCCCCHHHHH
Q 016925 246 IKRVYPPCDTSG--LQVLPLERSTEYPAIISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQ 323 (380)
Q Consensus 246 ~~vi~~gvd~~~--~~~~~~~~~~~~~~il~VGRl~p~K~~d~li~A~~~l~~~~~~~~~~~~LvIvG~g~~~~~~~~~~ 323 (380)
.+|+|-|.+... +...-. ..++-++.++-+.. .....+-+...++.+.. .++.++++-|.....++ ..+
T Consensus 32 ~eVi~LG~~vp~e~i~~~a~---~~~~d~V~lS~~~~-~~~~~~~~~~~~L~~~~---~~~~~i~vGG~~~~~~~--~~~ 102 (137)
T PRK02261 32 FEVINLGVMTSQEEFIDAAI---ETDADAILVSSLYG-HGEIDCRGLREKCIEAG---LGDILLYVGGNLVVGKH--DFE 102 (137)
T ss_pred CEEEECCCCCCHHHHHHHHH---HcCCCEEEEcCccc-cCHHHHHHHHHHHHhcC---CCCCeEEEECCCCCCcc--ChH
Confidence 468999987531 111111 13566777776665 34555555666665542 35776555554321111 124
Q ss_pred HHHHHHHhcCCCCcEEEccCCCHHHHHHHHhh
Q 016925 324 SLKDKSIELKVDGNVEFYKNLLYRSVLTIFMH 355 (380)
Q Consensus 324 ~L~~la~~lgl~~~V~f~G~v~~~el~~ly~~ 355 (380)
+.++.++++|+. ..|.+..+.+++.+++..
T Consensus 103 ~~~~~l~~~G~~--~vf~~~~~~~~i~~~l~~ 132 (137)
T PRK02261 103 EVEKKFKEMGFD--RVFPPGTDPEEAIDDLKK 132 (137)
T ss_pred HHHHHHHHcCCC--EEECcCCCHHHHHHHHHH
Confidence 566777888963 778877788888877654
No 145
>COG1056 NadR Nicotinamide mononucleotide adenylyltransferase [Coenzyme metabolism]
Probab=73.42 E-value=19 Score=31.12 Aligned_cols=66 Identities=17% Similarity=0.243 Sum_probs=46.3
Q ss_pred CCEEEEEecCCC-ccChHHHHHHHHHHHHHccCCCCCCeEEEEcCCCCC-------CCHHHHHHHHHHHHhcCCCCcEEE
Q 016925 269 YPAIISVAQFRP-EKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNK-------SDEERLQSLKDKSIELKVDGNVEF 340 (380)
Q Consensus 269 ~~~il~VGRl~p-~K~~d~li~A~~~l~~~~~~~~~~~~LvIvG~g~~~-------~~~~~~~~L~~la~~lgl~~~V~f 340 (380)
...-+++||+.| .+||-.+|+-...- -|--++++|+.... ..++...-+++..++.|+.-++.|
T Consensus 3 ~~rgv~~GRFqP~H~GHl~vi~~al~~--------vDeliI~iGSa~~~~t~~nPfTagER~~mi~~~L~~~~~~~r~~~ 74 (172)
T COG1056 3 MKRGVYFGRFQPLHTGHLYVIKRALSK--------VDELIIVIGSAQESHTLKNPFTAGERIPMIRDRLREAGLDLRVYL 74 (172)
T ss_pred ceEEEEEeccCCccHhHHHHHHHHHHh--------CCEEEEEEccCcccccccCCCCccchhHHHHHHHHhcCCCceEEE
Confidence 457899999997 89998887655432 35677889975432 334445677878888888766776
Q ss_pred cc
Q 016925 341 YK 342 (380)
Q Consensus 341 ~G 342 (380)
..
T Consensus 75 ~~ 76 (172)
T COG1056 75 RP 76 (172)
T ss_pred Ee
Confidence 54
No 146
>PF08288 PIGA: PIGA (GPI anchor biosynthesis); InterPro: IPR013234 This domain is found on phosphatidylinositol N-acetylglucosaminyltransferase proteins. These proteins are involved in GPI anchor biosynthesis and are associated with the disease paroxysmal nocturnal haemoglobinuria [].; GO: 0006506 GPI anchor biosynthetic process
Probab=71.89 E-value=13 Score=28.29 Aligned_cols=70 Identities=21% Similarity=0.254 Sum_probs=38.8
Q ss_pred ccCCCeEEEeccccccccCCCCccceehhhHhHHHHHHHHHHhcCCcEEEeCCCch-hhHH-H--HhHhCCcEEEEEeCC
Q 016925 96 LLHPPKVVHLYRRKWIEESTYPRFTMIGQSFGSVYLSWEALCKFTPLYYFDTSGYA-FTYP-L--ARIFGCRVICYTHYP 171 (380)
Q Consensus 96 l~~~v~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~pDi~~~~~~~~-~~~~-l--~~~~~~p~v~~~H~p 171 (380)
+++++++++++.........+|.+ +..+......+.+++.||++.+.... .+.- + ++..|.+.|++.|+.
T Consensus 12 ltngLKVYYlP~~~~~~~~t~Pt~------~~~~pl~R~IlirE~I~IVHgH~a~S~l~hE~i~hA~~mGlktVfTDHSL 85 (90)
T PF08288_consen 12 LTNGLKVYYLPLKVFYNQCTLPTL------FGSFPLLRNILIRERIDIVHGHQAFSTLCHEAILHARTMGLKTVFTDHSL 85 (90)
T ss_pred cCCCeEEEeecchhhhcCcchHHH------HHhhHHHHHHHHHcCeeEEEeehhhhHHHHHHHHHHHhCCCcEEeecccc
Confidence 445567888876544444444432 11222223446678899887544422 1111 1 345689999999954
No 147
>PF04464 Glyphos_transf: CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase ; InterPro: IPR007554 Wall-associated teichoic acids are a heterogeneous class of phosphate-rich polymers that are covalently linked to the cell wall peptidoglycan of Gram-positive bacteria. They consist of a main chain of phosphodiester-linked polyols and/or sugar moieties attached to peptidoglycan via a linkage unit. CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase is responsible for the polymerisation of the main chain of the teichoic acid by sequential transfer of glycerol-phosphate units from CDP-glycerol to the linkage unit lipid [].; GO: 0047355 CDP-glycerol glycerophosphotransferase activity, 0016020 membrane; PDB: 3L7K_B 3L7L_D 3L7I_A 3L7J_D 3L7M_D.
Probab=70.40 E-value=16 Score=35.46 Aligned_cols=135 Identities=14% Similarity=0.170 Sum_probs=68.2
Q ss_pred HhcCCCEEEEcCHHHHHHHHHHhCCCCceEEecCCCCCC-CC-CCCC---------CCCCCCCCEEEEEecCCCccCh--
Q 016925 218 VGSCADLAMVNSSWTQSHIEKLWGIPDRIKRVYPPCDTS-GL-QVLP---------LERSTEYPAIISVAQFRPEKAH-- 284 (380)
Q Consensus 218 ~~~~ad~ii~~S~~~~~~i~~~~~~~~k~~vi~~gvd~~-~~-~~~~---------~~~~~~~~~il~VGRl~p~K~~-- 284 (380)
..+..|.+++.|+++++.+.+.++...+ .++.-|..-. .+ .... .+...++..|+|.-.++....-
T Consensus 131 ~~~~~d~~~~~s~~~~~~~~~~f~~~~~-~i~~~G~PR~D~l~~~~~~~~~~i~~~~~~~~~~k~ILyaPT~R~~~~~~~ 209 (369)
T PF04464_consen 131 NYRNYDYFIVSSEFEKEIFKKAFGYPED-KILVTGYPRNDYLFNKSKENRNRIKKKLGIDKDKKVILYAPTWRDNSSNEY 209 (369)
T ss_dssp HHTT-SEEEESSHHHHHHHHHHTT--GG-GEEES--GGGHHHHHSTT-HHHHHHHHTT--SS-EEEEEE----GGG--GG
T ss_pred hccCCcEEEECCHHHHHHHHHHhccCcc-eEEEeCCCeEhHHhccCHHHHHHHHHHhccCCCCcEEEEeecccccccccc
Confidence 3468899999999999999998886322 3344555311 01 1100 0111235689998766654443
Q ss_pred ----HH--HHHHHHHHHHHccCCCCCCeEEEEcCCCCCCCHHHHHHHHHHHHh-cCCCCcEEEccCCCHHHHHHHHhhcc
Q 016925 285 ----PL--QLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIE-LKVDGNVEFYKNLLYRSVLTIFMHLF 357 (380)
Q Consensus 285 ----d~--li~A~~~l~~~~~~~~~~~~LvIvG~g~~~~~~~~~~~L~~la~~-lgl~~~V~f~G~v~~~el~~ly~~a~ 357 (380)
.. -++.+..+ . ..++.|++-... .++....+ ....++|.+... ..++.+++..||
T Consensus 210 ~~~~~~~~~~~~l~~~-~-----~~~~~li~k~Hp----------~~~~~~~~~~~~~~~i~~~~~--~~~~~~ll~~aD 271 (369)
T PF04464_consen 210 FKFFFSDLDFEKLNFL-L-----KNNYVLIIKPHP----------NMKKKFKDFKEDNSNIIFVSD--NEDIYDLLAAAD 271 (369)
T ss_dssp SS----TT-HHHHHHH-H-----TTTEEEEE--SH----------HHHTT----TT-TTTEEE-TT---S-HHHHHHT-S
T ss_pred ccccccccCHHHHHHH-h-----CCCcEEEEEeCc----------hhhhchhhhhccCCcEEECCC--CCCHHHHHHhcC
Confidence 11 23333322 2 278888887753 12222222 455678888764 338999999999
Q ss_pred EEEeechhhHHHHH
Q 016925 358 VFTMKWQLVYDEFL 371 (380)
Q Consensus 358 vf~~~~~~~~~~~~ 371 (380)
+++-.++-.+=+|+
T Consensus 272 iLITDySSi~fD~~ 285 (369)
T PF04464_consen 272 ILITDYSSIIFDFL 285 (369)
T ss_dssp EEEESS-THHHHHG
T ss_pred EEEEechhHHHHHH
Confidence 99998888777775
No 148
>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional
Probab=68.18 E-value=32 Score=33.08 Aligned_cols=39 Identities=10% Similarity=0.062 Sum_probs=30.2
Q ss_pred cEEEEECCCCCCCCChhHHHHHHHHHHHHhCCCceEEEEcCC
Q 016925 35 TSVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYTGD 76 (380)
Q Consensus 35 ~~I~~~~p~~~~~GG~ervl~~la~~L~~~g~~~~v~v~t~~ 76 (380)
|||+++.+.. - |=-....-++.+|++..|+.++++++..
T Consensus 1 mrILii~~~~--i-GD~il~tP~l~~Lk~~~P~a~I~~l~~~ 39 (348)
T PRK10916 1 MKILVIGPSW--V-GDMMMSQSLYRTLKARYPQAIIDVMAPA 39 (348)
T ss_pred CcEEEEccCc--c-cHHHhHHHHHHHHHHHCCCCeEEEEech
Confidence 6899998865 2 4445566788889999999999988854
No 149
>TIGR02201 heptsyl_trn_III lipopolysaccharide heptosyltransferase III, putative. This family consists of examples of the putative ADP-heptose:LPS heptosyltransferase III, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. This enzyme may be less widely distributed than heptosyltransferases I and II.
Probab=66.47 E-value=55 Score=31.35 Aligned_cols=83 Identities=11% Similarity=0.070 Sum_probs=47.7
Q ss_pred EEEEEecCCCccChHHHHHHHHHHHHHccCCCCCCeEEEEcCCCCCCCHHHHHHHHHHHHhcCCCCcEEEccCCCHHHHH
Q 016925 271 AIISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRSVL 350 (380)
Q Consensus 271 ~il~VGRl~p~K~~d~li~A~~~l~~~~~~~~~~~~LvIvG~g~~~~~~~~~~~L~~la~~lgl~~~V~f~G~v~~~el~ 350 (380)
.++..|.-.+.|... .+-|+.+.+... ..+.++++.|++.. +..+..++..+..+-+.-+.+.|..+=.|+.
T Consensus 184 i~i~p~a~~~~K~Wp--~e~~~~l~~~l~--~~~~~ivl~g~p~~----~e~~~~~~i~~~~~~~~~~~l~g~~sL~el~ 255 (344)
T TIGR02201 184 IVIQPTSRWFFKCWD--NDRFSALIDALH--ARGYEVVLTSGPDK----DELAMVNEIAQGCQTPRVTSLAGKLTLPQLA 255 (344)
T ss_pred EEEeCCCCccccCCC--HHHHHHHHHHHH--hCCCeEEEecCCCH----HHHHHHHHHHhhCCCCcccccCCCCCHHHHH
Confidence 345555544666654 223333322221 13678999986421 1112234433333333345689988889999
Q ss_pred HHHhhccEEEe
Q 016925 351 TIFMHLFVFTM 361 (380)
Q Consensus 351 ~ly~~a~vf~~ 361 (380)
.+++.|++|+.
T Consensus 256 ali~~a~l~Vs 266 (344)
T TIGR02201 256 ALIDHARLFIG 266 (344)
T ss_pred HHHHhCCEEEe
Confidence 99999999985
No 150
>PF01075 Glyco_transf_9: Glycosyltransferase family 9 (heptosyltransferase); InterPro: IPR002201 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 9 GT9 from CAZY comprises enzymes with two known activity; lipopolysaccharide N-acetylglucosaminyltransferase (2.4.1.56 from EC), heptosyltransferase (2.4 from EC). Heptosyltransferase I is thought to add L-glycero-D-manno-heptose to the inner 3-deoxy-D-manno-octulosonic acid (Kdo) residue of the lipopolysaccharide core []. Heptosyltransferase II is a glycosyltransferase involved in the synthesis of the inner core region of lipopolysaccharide []. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. These enzymes transfer heptose to the lipopolysaccharide core [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1PSW_A 2H1F_A 2GT1_A 3TOV_A 2H1H_A.
Probab=64.71 E-value=69 Score=28.80 Aligned_cols=83 Identities=13% Similarity=0.147 Sum_probs=45.5
Q ss_pred CEEEEEecCCCccChHHHHHHHHHHHHHccCCCCCCeEEEEcCCCCCCCHHHHHHHHHHHHhcCCCCcEEEccCCCHHHH
Q 016925 270 PAIISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRSV 349 (380)
Q Consensus 270 ~~il~VGRl~p~K~~d~li~A~~~l~~~~~~~~~~~~LvIvG~g~~~~~~~~~~~L~~la~~lgl~~~V~f~G~v~~~el 349 (380)
.+++..|.=.+.|+... +-|+++.+...+ ....+++.|+.. ....+..++..+... ...+.+.|..+-.|+
T Consensus 107 ~i~i~~~a~~~~k~wp~--e~~~~l~~~l~~--~~~~vvl~g~~~----~~~~~~~~~~~~~~~-~~~~~~~~~~~l~e~ 177 (247)
T PF01075_consen 107 YIGINPGASWPSKRWPA--EKWAELIERLKE--RGYRVVLLGGPE----EQEKEIADQIAAGLQ-NPVINLAGKTSLREL 177 (247)
T ss_dssp EEEEE---SSGGGS--H--HHHHHHHHHHCC--CT-EEEE--SSH----HHHHHHHHHHHTTHT-TTTEEETTTS-HHHH
T ss_pred eEEEeecCCCccccCCH--HHHHHHHHHHHh--hCceEEEEccch----HHHHHHHHHHHHhcc-cceEeecCCCCHHHH
Confidence 35677777678888764 445555444421 237889999752 111222333332221 136889999899999
Q ss_pred HHHHhhccEEEe
Q 016925 350 LTIFMHLFVFTM 361 (380)
Q Consensus 350 ~~ly~~a~vf~~ 361 (380)
..+++.||+++-
T Consensus 178 ~ali~~a~~~I~ 189 (247)
T PF01075_consen 178 AALISRADLVIG 189 (247)
T ss_dssp HHHHHTSSEEEE
T ss_pred HHHHhcCCEEEe
Confidence 999999999885
No 151
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=64.52 E-value=16 Score=28.11 Aligned_cols=40 Identities=3% Similarity=-0.192 Sum_probs=19.9
Q ss_pred HHHHHHHHHhcCCCCcEEE--ccCCCHHH--HHHHHhhccEEEee
Q 016925 322 LQSLKDKSIELKVDGNVEF--YKNLLYRS--VLTIFMHLFVFTMK 362 (380)
Q Consensus 322 ~~~L~~la~~lgl~~~V~f--~G~v~~~e--l~~ly~~a~vf~~~ 362 (380)
.+.+++.+++.|.. .+.+ .|.....+ ++..+.+||+.++.
T Consensus 12 ~~~~~~~~~~~G~~-~~~hg~~~~~~~~~~~l~~~i~~aD~VIv~ 55 (97)
T PF10087_consen 12 ERRYKRILEKYGGK-LIHHGRDGGDEKKASRLPSKIKKADLVIVF 55 (97)
T ss_pred HHHHHHHHHHcCCE-EEEEecCCCCccchhHHHHhcCCCCEEEEE
Confidence 35566666666654 2222 12222233 66666666665543
No 152
>KOG1160 consensus Fe-S oxidoreductase [Energy production and conversion]
Probab=63.82 E-value=16 Score=36.32 Aligned_cols=80 Identities=13% Similarity=0.062 Sum_probs=52.6
Q ss_pred hHHHHHHHHHHHHHccCCCCCCeEEEEcCCCCCCCHHHHHHHHHHHHhcCCCCcEEEccC--CCHHHHHHHHhhccEEEe
Q 016925 284 HPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKN--LLYRSVLTIFMHLFVFTM 361 (380)
Q Consensus 284 ~d~li~A~~~l~~~~~~~~~~~~LvIvG~g~~~~~~~~~~~L~~la~~lgl~~~V~f~G~--v~~~el~~ly~~a~vf~~ 361 (380)
.+++++.++.++++. ++.-.||.|||.+..+.-.+|.+.+ ..|+++.+...|- ....++ +.-.+=-.
T Consensus 430 wEr~~d~l~~lk~K~--qrtvyRlTlVkg~n~dd~~Ayfnlv-----~rglp~fieVkGvty~ges~~----s~lTm~nv 498 (601)
T KOG1160|consen 430 WERFLDSLKALKKKQ--QRTVYRLTLVKGWNSDDLPAYFNLV-----SRGLPDFIEVKGVTYCGESEL----SNLTMTNV 498 (601)
T ss_pred HHHHHHHHHHHHHhh--cceEEEEEEeccccccccHHHHHHH-----hccCCceEEEeceeEeccccc----CcccccCc
Confidence 456777788777654 5678999999987543333333322 3489999999883 232222 33333445
Q ss_pred echhhHHHHHHHH
Q 016925 362 KWQLVYDEFLKLY 374 (380)
Q Consensus 362 ~~~~~~~~~~~~~ 374 (380)
+|+|.|=+|.+..
T Consensus 499 p~~Ee~v~Fv~eL 511 (601)
T KOG1160|consen 499 PWHEEVVEFVFEL 511 (601)
T ss_pred cHHHHHHHHHHHH
Confidence 9999999998765
No 153
>PF04392 ABC_sub_bind: ABC transporter substrate binding protein; InterPro: IPR007487 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. This family contains many hypothetical proteins and some ABC transporter substrate binding proteins.; PDB: 3LFT_A 3LKV_A.
Probab=63.79 E-value=77 Score=29.63 Aligned_cols=131 Identities=12% Similarity=0.081 Sum_probs=62.0
Q ss_pred HHhcCCCEEEEcCHHHHHHHHHHhCCCCceEEecCCC-CCCCCCCCCCCCCCCCCEEEEEecCCCccChHHHHHHHHHHH
Q 016925 217 LVGSCADLAMVNSSWTQSHIEKLWGIPDRIKRVYPPC-DTSGLQVLPLERSTEYPAIISVAQFRPEKAHPLQLEAFSVAL 295 (380)
Q Consensus 217 ~~~~~ad~ii~~S~~~~~~i~~~~~~~~k~~vi~~gv-d~~~~~~~~~~~~~~~~~il~VGRl~p~K~~d~li~A~~~l~ 295 (380)
....+.|.|++......+.+.+.... .+-||+.++ |+....-......+.++ +--|. ..--++..|+.+.++.
T Consensus 55 l~~~~~DlIi~~gt~aa~~~~~~~~~--~iPVVf~~V~dp~~~~l~~~~~~~~~n-vTGv~---~~~~~~~~l~l~~~l~ 128 (294)
T PF04392_consen 55 LKAQKPDLIIAIGTPAAQALAKHLKD--DIPVVFCGVSDPVGAGLVDSLDRPGKN-VTGVS---ERPPIEKQLELIKKLF 128 (294)
T ss_dssp HCCTS-SEEEEESHHHHHHHHHH-SS---S-EEEECES-TTTTTS-S-SSS--SS-EEEEE---E---HHHHHHHHHHHS
T ss_pred HhcCCCCEEEEeCcHHHHHHHHhcCC--CcEEEEEeccChhhhhccccccCCCCC-EEEEE---CCcCHHHHHHHHHHhC
Confidence 34458999999988777777776542 155788887 43221111111111123 33333 2223455555555553
Q ss_pred HHccCCCCCC-eE-EEEcCCCCCCCHHHHHHHHHHHHhcCCCCcEEEccCCCHHHHHHHH----hhccEEEeec
Q 016925 296 RKLDADLPRP-RL-QFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRSVLTIF----MHLFVFTMKW 363 (380)
Q Consensus 296 ~~~~~~~~~~-~L-vIvG~g~~~~~~~~~~~L~~la~~lgl~~~V~f~G~v~~~el~~ly----~~a~vf~~~~ 363 (380)
|+. ++ ++..+. ........+.+++.++++|++-...-.. +.+|+...+ ...|++.+..
T Consensus 129 -------P~~k~igvl~~~~-~~~~~~~~~~~~~~a~~~g~~l~~~~v~--~~~~~~~~~~~l~~~~da~~~~~ 192 (294)
T PF04392_consen 129 -------PDAKRIGVLYDPS-EPNSVAQIEQLRKAAKKLGIELVEIPVP--SSEDLEQALEALAEKVDALYLLP 192 (294)
T ss_dssp -------TT--EEEEEEETT--HHHHHHHHHHHHHHHHTT-EEEEEEES--SGGGHHHHHHHHCTT-SEEEE-S
T ss_pred -------CCCCEEEEEecCC-CccHHHHHHHHHHHHHHcCCEEEEEecC--cHhHHHHHHHHhhccCCEEEEEC
Confidence 443 45 344432 1112456789999999999863222233 344554444 4567765543
No 154
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=62.75 E-value=5.9 Score=32.55 Aligned_cols=27 Identities=26% Similarity=0.565 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHhHhhhcCCCC
Q 016925 7 LIWAVITAVLASILILASHVHNARRNRT 34 (380)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 34 (380)
++|++|.+++. |+++..-.||.||.++
T Consensus 3 ~l~~iii~~i~-l~~~~~~~~~rRR~r~ 29 (130)
T PF12273_consen 3 VLFAIIIVAIL-LFLFLFYCHNRRRRRR 29 (130)
T ss_pred eeHHHHHHHHH-HHHHHHHHHHHHHhhc
Confidence 35565544433 3444555778888776
No 155
>TIGR02193 heptsyl_trn_I lipopolysaccharide heptosyltransferase I. This family consists of examples of ADP-heptose:LPS heptosyltransferase I, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=61.16 E-value=99 Score=29.11 Aligned_cols=77 Identities=14% Similarity=0.059 Sum_probs=48.4
Q ss_pred EEEEEecCCCccChH--HHHHHHHHHHHHccCCCCCCeEEEEcCCCCCCCHHHHHHHHHHHHhcCCCCcEEEccCCCHHH
Q 016925 271 AIISVAQFRPEKAHP--LQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRS 348 (380)
Q Consensus 271 ~il~VGRl~p~K~~d--~li~A~~~l~~~~~~~~~~~~LvIvG~g~~~~~~~~~~~L~~la~~lgl~~~V~f~G~v~~~e 348 (380)
.++..|.=.+.|... ...+....+.+ .+..+++.|+++ +..+..+++.+..+ + ..+.|..+=.|
T Consensus 182 i~i~~gas~~~K~wp~e~~~~l~~~l~~------~~~~~vl~~g~~-----~e~~~~~~i~~~~~--~-~~l~g~~sL~e 247 (319)
T TIGR02193 182 AVLLHATSRDDKTWPEERWRELARLLLA------RGLQIVLPWGND-----AEKQRAERIAEALP--G-AVVLPKMSLAE 247 (319)
T ss_pred EEEEeCCCcccCCCCHHHHHHHHHHHHH------CCCeEEEeCCCH-----HHHHHHHHHHhhCC--C-CeecCCCCHHH
Confidence 456777556788874 44444444432 367888875432 12233444444332 2 35779888899
Q ss_pred HHHHHhhccEEEe
Q 016925 349 VLTIFMHLFVFTM 361 (380)
Q Consensus 349 l~~ly~~a~vf~~ 361 (380)
+..++++|++|+-
T Consensus 248 l~ali~~a~l~I~ 260 (319)
T TIGR02193 248 VAALLAGADAVVG 260 (319)
T ss_pred HHHHHHcCCEEEe
Confidence 9999999999885
No 156
>TIGR03141 cytochro_ccmD heme exporter protein CcmD. The model for this protein family describes a small, hydrophobic, and only moderately well-conserved protein, tricky to identify accurately for all of these reasons. However, members are found as part of large operons involved in heme export across the inner membrane for assembly of c-type cytochromes in a large number of bacteria. The gray zone between the trusted cutoff (13.0) and noise cutoff (4.75) includes both low-scoring examples and false-positive matches to hydrophobic domains of longer proteins.
Probab=60.73 E-value=13 Score=24.49 Aligned_cols=21 Identities=14% Similarity=0.316 Sum_probs=13.8
Q ss_pred CCCchhHHHHHHHHHHHHHHH
Q 016925 1 MAPYGILIWAVITAVLASILI 21 (380)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~ 21 (380)
|-+||.-+|+.-...++.+.+
T Consensus 1 MGgy~~yVW~sYg~t~l~l~~ 21 (45)
T TIGR03141 1 MGGYAFYVWLAYGITALVLAG 21 (45)
T ss_pred CCCccHHHHHHHHHHHHHHHH
Confidence 789999999864444333333
No 157
>PF00185 OTCace: Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; InterPro: IPR006131 This family contains two related enzymes: Aspartate carbamoyltransferase (2.1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and is described by IPR006132 from INTERPRO. The carboxyl-terminal, aspartate/ornithine-binding domain is connected to the amino-terminal domain by two alpha-helices, which comprise a hinge between domains [].; GO: 0016597 amino acid binding, 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 4EP1_B 3Q98_A 3E2P_A 2RGW_E 4EKN_B 2G7M_E 3D6N_B 3M4J_A 3L06_A ....
Probab=57.38 E-value=78 Score=26.82 Aligned_cols=79 Identities=16% Similarity=0.171 Sum_probs=52.8
Q ss_pred CCEEEEEecCCCccChHHHHHHHHHHHHHccCCCCCCeEEEEcCCC--CCCCHHHHHHHHHHHHhcCCCCcEEEccCCCH
Q 016925 269 YPAIISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCR--NKSDEERLQSLKDKSIELKVDGNVEFYKNLLY 346 (380)
Q Consensus 269 ~~~il~VGRl~p~K~~d~li~A~~~l~~~~~~~~~~~~LvIvG~g~--~~~~~~~~~~L~~la~~lgl~~~V~f~G~v~~ 346 (380)
+..|.+||- +.-.+.+++..+.... +..+.+++... .+.+.+..+..++.+++.| ..|.+..
T Consensus 2 gl~i~~vGD-----~~~rv~~Sl~~~~~~~-----g~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~g--~~i~~~~---- 65 (158)
T PF00185_consen 2 GLKIAYVGD-----GHNRVAHSLIELLAKF-----GMEVVLIAPEGLRYPPDPEVLEKAKKNAKKNG--GKITITD---- 65 (158)
T ss_dssp TEEEEEESS-----TTSHHHHHHHHHHHHT-----TSEEEEESSGGGGGSHHHHHHHHHHHHHHHHT--TEEEEES----
T ss_pred CCEEEEECC-----CCChHHHHHHHHHHHc-----CCEEEEECCCcccCCCCHHHHHHHHHHHHHhC--CCeEEEe----
Confidence 357889992 4456777777776664 56799999653 1122246666777777765 5577773
Q ss_pred HHHHHHHhhccEEEe-ech
Q 016925 347 RSVLTIFMHLFVFTM-KWQ 364 (380)
Q Consensus 347 ~el~~ly~~a~vf~~-~~~ 364 (380)
++.+.+..||+..+ .|+
T Consensus 66 -~~~e~l~~aDvvy~~~~~ 83 (158)
T PF00185_consen 66 -DIEEALKGADVVYTDRWQ 83 (158)
T ss_dssp -SHHHHHTT-SEEEEESSS
T ss_pred -CHHHhcCCCCEEEEcCcc
Confidence 67799999999554 787
No 158
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=56.57 E-value=31 Score=26.97 Aligned_cols=55 Identities=13% Similarity=0.019 Sum_probs=40.0
Q ss_pred EEEcCCCCCCCHHHHHHHHHHHHhcCCCCcEEEccCCCHHHHHHHHhhccEEEeechhhH
Q 016925 308 QFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRSVLTIFMHLFVFTMKWQLVY 367 (380)
Q Consensus 308 vIvG~g~~~~~~~~~~~L~~la~~lgl~~~V~f~G~v~~~el~~ly~~a~vf~~~~~~~~ 367 (380)
++-|+| .+++=..+++++.+++.|++ +.+. -.+..++++....+|+.+...|.-|
T Consensus 5 l~C~~G--aSSs~la~km~~~a~~~gi~--~~i~-a~~~~e~~~~~~~~Dvill~PQv~~ 59 (99)
T cd05565 5 VLCAGG--GTSGLLANALNKGAKERGVP--LEAA-AGAYGSHYDMIPDYDLVILAPQMAS 59 (99)
T ss_pred EECCCC--CCHHHHHHHHHHHHHHCCCc--EEEE-EeeHHHHHHhccCCCEEEEcChHHH
Confidence 333544 34455568999999999997 4443 4456789999999999988777654
No 159
>COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]
Probab=55.64 E-value=2.1e+02 Score=28.11 Aligned_cols=129 Identities=14% Similarity=0.105 Sum_probs=84.4
Q ss_pred hcCCCEEEEcCHHHHHHHHHHhCCCCceEEecCCC-CCC-----CCC-C---C-C-CCCCCCCCEE-EEEecCCCc-cCh
Q 016925 219 GSCADLAMVNSSWTQSHIEKLWGIPDRIKRVYPPC-DTS-----GLQ-V---L-P-LERSTEYPAI-ISVAQFRPE-KAH 284 (380)
Q Consensus 219 ~~~ad~ii~~S~~~~~~i~~~~~~~~k~~vi~~gv-d~~-----~~~-~---~-~-~~~~~~~~~i-l~VGRl~p~-K~~ 284 (380)
..-+|.-+|+++-.++.+.+-.-.++++.|+=|++ |.- ... . . . .. ..+++++ ++.=|-+-. +++
T Consensus 143 ~~~S~~hfapte~ar~nLl~EG~~~~~IfvtGnt~iDal~~~~~~~~~~~~~~~~~~~-~~~~~~iLvT~HRreN~~~~~ 221 (383)
T COG0381 143 SHLSDLHFAPTEIARKNLLREGVPEKRIFVTGNTVIDALLNTRDRVLEDSKILAKGLD-DKDKKYILVTAHRRENVGEPL 221 (383)
T ss_pred HHhhhhhcCChHHHHHHHHHcCCCccceEEeCChHHHHHHHHHhhhccchhhHHhhhc-cccCcEEEEEcchhhcccccH
Confidence 34578888999999988877543345677776653 310 000 0 0 0 11 1223454 444466654 999
Q ss_pred HHHHHHHHHHHHHccCCCCCCeEEEEcCCCCCCCHHHHHHHHHHH-HhcCCCCcEEEccCCCHHHHHHHHhhccEEE
Q 016925 285 PLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKS-IELKVDGNVEFYKNLLYRSVLTIFMHLFVFT 360 (380)
Q Consensus 285 d~li~A~~~l~~~~~~~~~~~~LvIvG~g~~~~~~~~~~~L~~la-~~lgl~~~V~f~G~v~~~el~~ly~~a~vf~ 360 (380)
..+++|+..+.+.. ++..++.-=... ..+++.. ..|+-.++|.+..++...+...++.+|.+.+
T Consensus 222 ~~i~~al~~i~~~~----~~~~viyp~H~~--------~~v~e~~~~~L~~~~~v~li~pl~~~~f~~L~~~a~~il 286 (383)
T COG0381 222 EEICEALREIAEEY----PDVIVIYPVHPR--------PRVRELVLKRLKNVERVKLIDPLGYLDFHNLMKNAFLIL 286 (383)
T ss_pred HHHHHHHHHHHHhC----CCceEEEeCCCC--------hhhhHHHHHHhCCCCcEEEeCCcchHHHHHHHHhceEEE
Confidence 99999999998874 788877665432 2334444 5566667899999999999999999997654
No 160
>TIGR03682 arCOG04112 arCOG04112 universal archaeal diphthamide biosynthesis domain protein. This family of proteins has been observed universally in archaeal genomes and contains a match to the TIGR00322 model for the diphthamide biosynthesis protein 2-related domain.
Probab=55.29 E-value=27 Score=33.32 Aligned_cols=56 Identities=13% Similarity=0.093 Sum_probs=45.2
Q ss_pred CCeEEEEcCCCCCCCHHHHHHHHHHHHhcCCCCcEEEccCCCHHHHHHHHhhccEEEe
Q 016925 304 RPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRSVLTIFMHLFVFTM 361 (380)
Q Consensus 304 ~~~LvIvG~g~~~~~~~~~~~L~~la~~lgl~~~V~f~G~v~~~el~~ly~~a~vf~~ 361 (380)
+.-=+|+|.-......+..+.|++++++.|....+...|.++.+.|..+ ..|+||+
T Consensus 213 ~~vGIlvgTl~~q~~~~~~~~l~~ll~~~gkk~y~i~~~~in~~kL~nf--~iD~fV~ 268 (308)
T TIGR03682 213 KKFGILVSTKKGQRRPELAEELKKLLEELGKEALLILLDNISPDQLRNL--DFDAYVN 268 (308)
T ss_pred CeEEEEEEccCcCCCHHHHHHHHHHHHHcCCeEEEEEeCCCCHHHHhcC--CcCEEEE
Confidence 3445788865444566778899999999999999999999999999777 5899885
No 161
>PF00205 TPP_enzyme_M: Thiamine pyrophosphate enzyme, central domain; InterPro: IPR012000 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This central domain of TPP enzymes contains a 2-fold Rossman fold. ; GO: 0000287 magnesium ion binding, 0030976 thiamine pyrophosphate binding; PDB: 1OZH_C 1OZF_B 1OZG_B 2Q29_B 2Q28_A 2Q27_B 1OVM_B 1PVD_A 1PYD_B 2VK1_C ....
Probab=55.24 E-value=21 Score=29.21 Aligned_cols=56 Identities=7% Similarity=0.035 Sum_probs=36.7
Q ss_pred CCeEEEEcCCCCCCCHHHHHHHHHHHHhcCCC----------------CcEEEccCCCHHHHHHHHhhccEEEe
Q 016925 304 RPRLQFVGSCRNKSDEERLQSLKDKSIELKVD----------------GNVEFYKNLLYRSVLTIFMHLFVFTM 361 (380)
Q Consensus 304 ~~~LvIvG~g~~~~~~~~~~~L~~la~~lgl~----------------~~V~f~G~v~~~el~~ly~~a~vf~~ 361 (380)
.-.++++|.+-... .-.++++++++++|++ ..+=..|........+++.+||+.+.
T Consensus 12 ~rP~il~G~g~~~~--~a~~~l~~lae~~~~Pv~~t~~~kg~i~~~hp~~~G~~g~~~~~~~~~~l~~aDlvl~ 83 (137)
T PF00205_consen 12 KRPVILAGRGARRS--GAAEELRELAEKLGIPVATTPMGKGVIPEDHPLFLGYLGLFGSPAANEALEQADLVLA 83 (137)
T ss_dssp SSEEEEE-HHHHHT--TCHHHHHHHHHHHTSEEEEEGGGTTSSTTTSTTEEEESCGGSCHHHHHHHHHSSEEEE
T ss_pred CCEEEEEcCCcChh--hHHHHHHHHHHHHCCCEEecCccccccCCCCchhcccCCccCCHHHHHHhcCCCEEEE
Confidence 34688999662111 1247899999999887 12223344446788899999999765
No 162
>PRK10834 vancomycin high temperature exclusion protein; Provisional
Probab=55.15 E-value=58 Score=29.85 Aligned_cols=68 Identities=13% Similarity=-0.019 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHccCCCCCCeEEEEcCCCCCCCHHHHHHHHHHHHhcCCCCcEEEccCCCHHHHHHHHhhccE
Q 016925 285 PLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRSVLTIFMHLFV 358 (380)
Q Consensus 285 d~li~A~~~l~~~~~~~~~~~~LvIvG~g~~~~~~~~~~~L~~la~~lgl~~~V~f~G~v~~~el~~ly~~a~v 358 (380)
+++..|+.+.++ . +..++++-|+.... ..+..+.+++++.++|+++.-.+..+-+.+.....+...++
T Consensus 68 ~Rl~~A~~LYk~-g----k~~~ilvSGg~~~~-~~~Ea~~M~~yLi~~GVp~e~Ii~e~~s~nT~en~~~a~~i 135 (239)
T PRK10834 68 YRIQGAINAYNS-G----KVNYLLLSGDNALQ-SYNEPMTMRKDLIAAGVDPSDIVLDYAGFRTLDSIVRTRKV 135 (239)
T ss_pred HHHHHHHHHHHh-C----CCCEEEEeCCCCCC-CCCHHHHHHHHHHHcCCCHHHEEecCCCCCHHHHHHHHHHH
Confidence 666677776643 3 66788888875322 22334679999999999998888887777777776666655
No 163
>PRK07742 phosphate butyryltransferase; Validated
Probab=54.96 E-value=1.2e+02 Score=28.62 Aligned_cols=79 Identities=16% Similarity=0.140 Sum_probs=51.8
Q ss_pred hHHHHHHHHHHHHHccCCCCCCeEEEEcCCCCCCCHHHHHHHHHHHHhcCC--CCcEEEccCCCHHH----HHHHHh--h
Q 016925 284 HPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKV--DGNVEFYKNLLYRS----VLTIFM--H 355 (380)
Q Consensus 284 ~d~li~A~~~l~~~~~~~~~~~~LvIvG~g~~~~~~~~~~~L~~la~~lgl--~~~V~f~G~v~~~e----l~~ly~--~ 355 (380)
-+..|+|.....++. . .+++++|+ .+++++.++++|+ .+++.+...-+.++ -..+.+ .
T Consensus 25 d~~vl~Aa~~a~~e~----~-~~~iLvG~---------~~~I~~~~~~~~l~~~~~~~Ii~~~~~~~s~~~a~~lV~~G~ 90 (299)
T PRK07742 25 DEEVIEAVAKAIELQ----L-ARFRLYGN---------QEKIMGMLQEHGLQTSEHIEIIHAQSSAEAAELAVKAVRNGE 90 (299)
T ss_pred CHHHHHHHHHHHHcC----C-ceEEEECC---------HHHHHHHHHHCCCCCCCCcEEECCCCHHHHHHHHHHHHHCCC
Confidence 356778887776653 4 88999996 2678888999887 55677765433222 134666 6
Q ss_pred ccEEEeechhhHHHHHHHHHhh
Q 016925 356 LFVFTMKWQLVYDEFLKLYLQK 377 (380)
Q Consensus 356 a~vf~~~~~~~~~~~~~~~~~~ 377 (380)
||+++ +....-..+++..|++
T Consensus 91 aD~lv-sG~~tta~~~~~~l~~ 111 (299)
T PRK07742 91 ADVLM-KGNVPTANILKAVLNK 111 (299)
T ss_pred CCEEE-ECCcCHHHHHHHHhcc
Confidence 77776 4444555677766764
No 164
>PF00763 THF_DHG_CYH: Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain; InterPro: IPR020630 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the N-terminal catalytic domain of these enzymes. ; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 2C2X_B 2C2Y_A 1EDZ_A 1EE9_A 4A26_B 3NGL_C 3NGX_A 1B0A_A 1DIA_A 1A4I_B ....
Probab=53.66 E-value=32 Score=27.63 Aligned_cols=52 Identities=13% Similarity=0.229 Sum_probs=35.1
Q ss_pred CCCeEEEEcCCCCCCCHHHHHHHHHHHHhcCCCCcEE-EccCCCHHHHHHHHhhc
Q 016925 303 PRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVE-FYKNLLYRSVLTIFMHL 356 (380)
Q Consensus 303 ~~~~LvIvG~g~~~~~~~~~~~L~~la~~lgl~~~V~-f~G~v~~~el~~ly~~a 356 (380)
|..-.+.+|+. +.+..|.+..++.++++|+.-.+. |...++.+++.+.+...
T Consensus 30 P~Laii~vg~d--~~S~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~i~~l 82 (117)
T PF00763_consen 30 PKLAIILVGDD--PASISYVRSKQKAAEKLGIEFELIELPEDISEEELLELIEKL 82 (117)
T ss_dssp -EEEEEEES----HHHHHHHHHHHHHHHHHT-EEEEEEE-TTSSHHHHHHHHHHH
T ss_pred cEEEEEecCCC--hhHHHHHHHHHHHHHHcCCceEEEECCCCcCHHHHHHHHHHH
Confidence 54555666653 456779999999999999985554 55678888888777653
No 165
>cd01967 Nitrogenase_MoFe_alpha_like Nitrogenase_MoFe_alpha_like: Nitrogenase MoFe protein, alpha subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. Three genetically distinct types of nitrogenase systems are known to exist: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). This group contains the alpha subunit of component 1 of all three different forms. The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. The role of the delta subunit is unknown. For MoFe, each alphabeta pair of subunits contains one
Probab=52.96 E-value=1e+02 Score=30.34 Aligned_cols=93 Identities=11% Similarity=0.019 Sum_probs=57.2
Q ss_pred CccChHHHHHHHHHHHHHcc--CCCCCCeEEEEcCCCCCCCHHHHHHHHHHHHhcCCCCcEEEccCCCHHHHHHHHhhcc
Q 016925 280 PEKAHPLQLEAFSVALRKLD--ADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRSVLTIFMHLF 357 (380)
Q Consensus 280 p~K~~d~li~A~~~l~~~~~--~~~~~~~LvIvG~g~~~~~~~~~~~L~~la~~lgl~~~V~f~G~v~~~el~~ly~~a~ 357 (380)
..-|.+.+++|+........ +..++-.+-|+|.-... .-.++|+++.+++|++-+..|.|.-+-+|+.. +.+|.
T Consensus 134 ~~~G~~~a~~al~~~l~~~~~~~~~~~~~VNiig~~~~~---~d~~el~~lL~~~Gi~~~~~~~~~~~~~~i~~-~~~A~ 209 (406)
T cd01967 134 QSLGHHIANDAILDHLVGTKEPEEKTPYDVNIIGEYNIG---GDAWVIKPLLEELGIRVNATFTGDGTVDELRR-AHRAK 209 (406)
T ss_pred ccHHHHHHHHHHHHHhcCCCCcCCCCCCeEEEEeccccc---hhHHHHHHHHHHcCCEEEEEeCCCCCHHHHhh-CccCC
Confidence 34668888888765432110 11234568888864221 23578999999999999999998888778876 55666
Q ss_pred EEEeechhhHHHHHHHHHhh
Q 016925 358 VFTMKWQLVYDEFLKLYLQK 377 (380)
Q Consensus 358 vf~~~~~~~~~~~~~~~~~~ 377 (380)
+-+...+ .+|..+-.+||+
T Consensus 210 ~niv~~~-~~~~~~a~~L~~ 228 (406)
T cd01967 210 LNLVHCS-RSMNYLAREMEE 228 (406)
T ss_pred EEEEECh-HHHHHHHHHHHH
Confidence 5332211 234444444443
No 166
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=52.22 E-value=44 Score=25.74 Aligned_cols=56 Identities=14% Similarity=0.079 Sum_probs=40.4
Q ss_pred EEEEcCCCCCCCHHHHHHHHHHHHhcCCCCcEEEccCCCHHHHHHHHhhccEEEeechhhH
Q 016925 307 LQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRSVLTIFMHLFVFTMKWQLVY 367 (380)
Q Consensus 307 LvIvG~g~~~~~~~~~~~L~~la~~lgl~~~V~f~G~v~~~el~~ly~~a~vf~~~~~~~~ 367 (380)
|++-|.|- ++.-..+++++.+++.|++-.|.-.+ -.++.+....+|+.+...+..|
T Consensus 3 l~~Cg~G~--sTS~~~~ki~~~~~~~~~~~~v~~~~---~~~~~~~~~~~Diil~~Pqv~~ 58 (96)
T cd05564 3 LLVCSAGM--STSILVKKMKKAAEKRGIDAEIEAVP---ESELEEYIDDADVVLLGPQVRY 58 (96)
T ss_pred EEEcCCCc--hHHHHHHHHHHHHHHCCCceEEEEec---HHHHHHhcCCCCEEEEChhHHH
Confidence 45556553 22345689999999999986665444 4578788899999998887765
No 167
>cd00316 Oxidoreductase_nitrogenase The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. This group contains both alpha and beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase) and, both subunits of Protochlorophyllide (Pchlide) reductase and chlorophyllide (chlide) reductase. The nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized nitrogenase is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers whose alpha and beta subunits are similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molec
Probab=51.98 E-value=87 Score=30.58 Aligned_cols=94 Identities=13% Similarity=0.081 Sum_probs=59.5
Q ss_pred CccChHHHHHHHHHHHHHc--cCCCCCCeEEEEcCCCCCCCHHHHHHHHHHHHhcCCCCcEEEccCCCHHHHHHHHhhcc
Q 016925 280 PEKAHPLQLEAFSVALRKL--DADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRSVLTIFMHLF 357 (380)
Q Consensus 280 p~K~~d~li~A~~~l~~~~--~~~~~~~~LvIvG~g~~~~~~~~~~~L~~la~~lgl~~~V~f~G~v~~~el~~ly~~a~ 357 (380)
...|++.+++++....... +.....-.+-|+|...... .-.++|+++.+++|++-+..+.+..+-+|+..+-+++-
T Consensus 126 ~~~G~~~a~~~~~~~~~~~~~~~~~~~~~vNlig~~~~~~--~d~~el~~ll~~~G~~v~~~~~~~~s~~~i~~~~~A~~ 203 (399)
T cd00316 126 QSAGYDAAVKAIIDHLVGTAEPEETEPGSVNLIGGYNLGG--GDLRELKRLLEEMGIRVNALFDGGTTVEELRELGNAKL 203 (399)
T ss_pred HHHHHHHHHHHHHHHHhcccCcCCCCCCcEEEECCCCCch--hhHHHHHHHHHHcCCcEEEEcCCCCCHHHHHhhccCcE
Confidence 4467888888887654321 0122455688889754321 23579999999999998888888778788877544444
Q ss_pred EEEeechhhHHHHHHHHHhh
Q 016925 358 VFTMKWQLVYDEFLKLYLQK 377 (380)
Q Consensus 358 vf~~~~~~~~~~~~~~~~~~ 377 (380)
..++.. .+|.++-.||++
T Consensus 204 nlv~~~--~~g~~~a~~l~~ 221 (399)
T cd00316 204 NLVLCR--ESGLYLARYLEE 221 (399)
T ss_pred EEEecH--hHHHHHHHHHHH
Confidence 455432 245555555543
No 168
>PRK02910 light-independent protochlorophyllide reductase subunit B; Provisional
Probab=50.76 E-value=1.3e+02 Score=30.86 Aligned_cols=72 Identities=17% Similarity=0.189 Sum_probs=49.6
Q ss_pred CCeEEEEcCCCCC-CCHHHHHHHHHHHHhcCCCCcEEEccCCCHHHHHHHHhhccEEEeechhhHHHHHHHHHhh
Q 016925 304 RPRLQFVGSCRNK-SDEERLQSLKDKSIELKVDGNVEFYKNLLYRSVLTIFMHLFVFTMKWQLVYDEFLKLYLQK 377 (380)
Q Consensus 304 ~~~LvIvG~g~~~-~~~~~~~~L~~la~~lgl~~~V~f~G~v~~~el~~ly~~a~vf~~~~~~~~~~~~~~~~~~ 377 (380)
...+-|+|..... ....-..+++++.+++|++-++.|.+..+-+|+.. +.+|++=+...+| +|+.+-.||++
T Consensus 158 ~~~VNIiG~~~l~f~~~~D~~EikrlL~~~Gi~vn~v~p~g~s~~di~~-l~~A~~nivl~~~-~g~~~A~~Lee 230 (519)
T PRK02910 158 RPSVNLLGPTALGFHHRDDLTELRRLLATLGIDVNVVAPLGASPADLKR-LPAAWFNVVLYRE-IGESAARYLER 230 (519)
T ss_pred CCeEEEEecCccCCCChhHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHh-cccCcEEEEeCHH-HHHHHHHHHHH
Confidence 4568888864221 12234578999999999999999999888778766 4556664444544 66666666664
No 169
>PRK02102 ornithine carbamoyltransferase; Validated
Probab=50.56 E-value=2.4e+02 Score=27.19 Aligned_cols=122 Identities=10% Similarity=-0.054 Sum_probs=72.0
Q ss_pred HhcCCCEEEE--cCHHHHHHHHHHhCCCCceEEecCCCCCCCCCCC-C------C---CCCCCCCEEEEEecCCCccChH
Q 016925 218 VGSCADLAMV--NSSWTQSHIEKLWGIPDRIKRVYPPCDTSGLQVL-P------L---ERSTEYPAIISVAQFRPEKAHP 285 (380)
Q Consensus 218 ~~~~ad~ii~--~S~~~~~~i~~~~~~~~k~~vi~~gvd~~~~~~~-~------~---~~~~~~~~il~VGRl~p~K~~d 285 (380)
+.+.+|.|+. .++...+++.+... +-|| |+-+ ....|. . . ....++..|.+||-+. +
T Consensus 98 ls~y~D~iviR~~~~~~~~~~a~~~~----vPVI-Na~~-~~~HPtQaLaDl~Ti~e~~g~l~g~~va~vGd~~---~-- 166 (331)
T PRK02102 98 LGRMYDGIEYRGFKQEIVEELAKYSG----VPVW-NGLT-DEWHPTQMLADFMTMKEHFGPLKGLKLAYVGDGR---N-- 166 (331)
T ss_pred HhhcCCEEEEECCchHHHHHHHHhCC----CCEE-ECCC-CCCChHHHHHHHHHHHHHhCCCCCCEEEEECCCc---c--
Confidence 3456898885 55555566655433 2244 5544 234441 0 0 0113457899999763 2
Q ss_pred HHHHHHHHHHHHccCCCCCCeEEEEcCCCCCCCHHHHHHHHHHHHhcCCCCcEEEccCCCHHHHHHHHhhccEEEee
Q 016925 286 LQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRSVLTIFMHLFVFTMK 362 (380)
Q Consensus 286 ~li~A~~~l~~~~~~~~~~~~LvIvG~g~~~~~~~~~~~L~~la~~lgl~~~V~f~G~v~~~el~~ly~~a~vf~~~ 362 (380)
.+++.+..+... -+..+.+++........++.+..++.+++.|. .+...- ++.+.+..||+..+.
T Consensus 167 ~v~~Sl~~~~~~-----~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~--~~~~~~-----d~~ea~~~aDvvyt~ 231 (331)
T PRK02102 167 NMANSLMVGGAK-----LGMDVRICAPKELWPEEELVALAREIAKETGA--KITITE-----DPEEAVKGADVIYTD 231 (331)
T ss_pred cHHHHHHHHHHH-----cCCEEEEECCcccccCHHHHHHHHHHHHHcCC--eEEEEc-----CHHHHhCCCCEEEEc
Confidence 255666555554 36899999965333344555666667666664 355432 577899999997764
No 170
>PRK10964 ADP-heptose:LPS heptosyl transferase I; Provisional
Probab=50.29 E-value=1.5e+02 Score=28.04 Aligned_cols=79 Identities=16% Similarity=0.084 Sum_probs=46.3
Q ss_pred CCEEE-EEecCCCccChH--HHHHHHHHHHHHccCCCCCCeEEEEcCCCCCCCHHHHHHHHHHHHhcCCCCcEEEccCCC
Q 016925 269 YPAII-SVAQFRPEKAHP--LQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLL 345 (380)
Q Consensus 269 ~~~il-~VGRl~p~K~~d--~li~A~~~l~~~~~~~~~~~~LvIvG~g~~~~~~~~~~~L~~la~~lgl~~~V~f~G~v~ 345 (380)
+++++ ..|--.+.|+.. ...+....+.+ .+.++++.|+++ .+ .+..+++++. ...+.+.|..+
T Consensus 178 ~~~i~~~~~~s~~~k~Wp~e~~a~li~~l~~------~~~~ivl~~G~~--~e---~~~~~~i~~~---~~~~~l~g~~s 243 (322)
T PRK10964 178 GPYLVFLHATTRDDKHWPEAHWRELIGLLAP------SGLRIKLPWGAE--HE---EQRAKRLAEG---FPYVEVLPKLS 243 (322)
T ss_pred CCeEEEEeCCCcccccCCHHHHHHHHHHHHH------CCCeEEEeCCCH--HH---HHHHHHHHcc---CCcceecCCCC
Confidence 45553 445434566655 33344444422 367777763332 11 2333443332 23577889889
Q ss_pred HHHHHHHHhhccEEEe
Q 016925 346 YRSVLTIFMHLFVFTM 361 (380)
Q Consensus 346 ~~el~~ly~~a~vf~~ 361 (380)
=.|+..+++.||+|+-
T Consensus 244 L~elaali~~a~l~I~ 259 (322)
T PRK10964 244 LEQVARVLAGAKAVVS 259 (322)
T ss_pred HHHHHHHHHhCCEEEe
Confidence 9999999999999985
No 171
>KOG2648 consensus Diphthamide biosynthesis protein [Translation, ribosomal structure and biogenesis]
Probab=50.22 E-value=30 Score=34.45 Aligned_cols=57 Identities=18% Similarity=0.135 Sum_probs=46.5
Q ss_pred CCeEEEEcCCCCCCCHHHHHHHHHHHHhcCCCCcEEEccCCCHHHHHHHHhhccEEEe
Q 016925 304 RPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRSVLTIFMHLFVFTM 361 (380)
Q Consensus 304 ~~~LvIvG~g~~~~~~~~~~~L~~la~~lgl~~~V~f~G~v~~~el~~ly~~a~vf~~ 361 (380)
+.-=+|+|.-....+.+..++|+++++..|....+..+|.+....|+. +...|+||+
T Consensus 267 ~~iGlivGTLG~qg~~~vl~~L~~~~~~~Gkk~y~l~~g~inPaKLAn-F~eIDvfV~ 323 (453)
T KOG2648|consen 267 RTIGLIVGTLGRQGNREVLEHLRKLLKAAGKKSYVLALGEINPAKLAN-FPEIDVFVQ 323 (453)
T ss_pred CeEEEEEecccccCCHHHHHHHHHHHHHcCCceEEEEecCCCHHHhcC-CccccEEEE
Confidence 334488897665677888899999999999999999999998877754 455999885
No 172
>PF02698 DUF218: DUF218 domain; InterPro: IPR003848 This domain of unknown function is found in several uncharacterised proteins.; PDB: 3CA8_A.
Probab=49.54 E-value=20 Score=30.00 Aligned_cols=60 Identities=18% Similarity=0.138 Sum_probs=27.5
Q ss_pred hHHHHHHHHHHHHHccCCCCCCeEEEEcCCCCCCCHHHHHHHHHHHHhcCCCCcEEEccCCCHHH
Q 016925 284 HPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRS 348 (380)
Q Consensus 284 ~d~li~A~~~l~~~~~~~~~~~~LvIvG~g~~~~~~~~~~~L~~la~~lgl~~~V~f~G~v~~~e 348 (380)
.+.+-.|..+.++ + +..++++.|+..........+.+++.+.+.|+++...+...-+.+.
T Consensus 23 ~~R~~~a~~L~~~-g----~~~~il~SGg~~~~~~~~ea~~~~~~l~~~gvp~~~I~~e~~s~~T 82 (155)
T PF02698_consen 23 RERLDEAARLYKA-G----YAPRILFSGGYGHGDGRSEAEAMRDYLIELGVPEERIILEPKSTNT 82 (155)
T ss_dssp HHHHHHHHHHHH--H----HT--EEEE--SSTTHTS-HHHHHHHHHHHT---GGGEEEE----SH
T ss_pred HHHHHHHHHHHhc-C----CCCeEEECCCCCCCCCCCHHHHHHHHHHhcccchheeEccCCCCCH
Confidence 4455455555543 3 6778899985532212345678889999999995544444333333
No 173
>PRK10494 hypothetical protein; Provisional
Probab=49.50 E-value=33 Score=31.80 Aligned_cols=52 Identities=15% Similarity=0.107 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHccCCCCCCeEEEEcCCCCCCCHHHHHHHHHHHHhcCCCCcEEEc
Q 016925 285 PLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFY 341 (380)
Q Consensus 285 d~li~A~~~l~~~~~~~~~~~~LvIvG~g~~~~~~~~~~~L~~la~~lgl~~~V~f~ 341 (380)
+++.+|+.+.++ + ++.++++-|+.......+..+-.++.+.++|+++.-.+.
T Consensus 107 ~Rl~~a~~L~r~-~----~~~~ii~SGg~~~~~~~sEA~~~~~~l~~lGVp~~~Ii~ 158 (259)
T PRK10494 107 PRLTEGIRLWRA-N----PGAKLIFTGGAAKTNTVSTAEVGARVAQSLGVPREDIIT 158 (259)
T ss_pred HHHHHHHHHHHh-C----CCCEEEEECCCCCCCCCCHHHHHHHHHHHcCCCHHHeee
Confidence 688888887654 3 788999998643222223456788999999999764443
No 174
>TIGR02706 P_butyryltrans phosphate butyryltransferase. Members of this family are phosphate butyryltransferase, also called phosphotransbutyrylase. In general, this enzyme is found in butyrate-producing anaerobic bacteria, encoded next to the gene for butyrate kinase. Together, these two enzymes represent what may be the less common of two pathways for butyrate production from butyryl-CoA. The alternative is transfer of the CoA group to acetate by butyryl-CoA:acetate CoA transferase. Cutoffs for this model are set such that the homolog from Thermotoga maritima, whose activity on butyryl-CoA is only 30 % of its activity with acetyl-CoA, scores in the zone between trusted and noice cutoffs.
Probab=49.42 E-value=1.4e+02 Score=28.17 Aligned_cols=80 Identities=18% Similarity=0.192 Sum_probs=52.4
Q ss_pred hHHHHHHHHHHHHHccCCCCCCeEEEEcCCCCCCCHHHHHHHHHHHHhcCCC-CcEEEccCCC-HHHH---HHHHh--hc
Q 016925 284 HPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVD-GNVEFYKNLL-YRSV---LTIFM--HL 356 (380)
Q Consensus 284 ~d~li~A~~~l~~~~~~~~~~~~LvIvG~g~~~~~~~~~~~L~~la~~lgl~-~~V~f~G~v~-~~el---~~ly~--~a 356 (380)
=+..++|...+.+. ...+.+++|+. +.+++.+++.|+. +++.+...-+ .+.+ ..+.+ .|
T Consensus 23 d~~vl~A~~~~~~~-----~~~~~iLvG~~---------~~I~~~~~~~~l~~~~ieIi~~~~~~~s~~~a~~lv~~G~a 88 (294)
T TIGR02706 23 DEPVLEAVKEAKEH-----GIARAILVGDE---------EKINEIAKKIGMNLDDVEIVNAPSPKKAALLAVRLVSTGKA 88 (294)
T ss_pred CHHHHHHHHHHHHC-----CCceEEEECCH---------HHHHHHHHHcCCCccCcEEECCCCcHHHHHHHHHHHHCCCC
Confidence 35667787777553 56899999962 5788888888773 4566654321 1222 34555 66
Q ss_pred cEEEeechhhHHHHHHHHHhhc
Q 016925 357 FVFTMKWQLVYDEFLKLYLQKS 378 (380)
Q Consensus 357 ~vf~~~~~~~~~~~~~~~~~~~ 378 (380)
|+++ +....-|.+++..|++-
T Consensus 89 D~~v-sg~~~T~a~l~~~l~~~ 109 (294)
T TIGR02706 89 DMLM-KGLVDTATFLRSVLNKE 109 (294)
T ss_pred CEEE-eCCcCHHHHHHHHhhhc
Confidence 6666 55656789998888753
No 175
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=48.81 E-value=52 Score=25.36 Aligned_cols=56 Identities=14% Similarity=0.055 Sum_probs=40.0
Q ss_pred EEEEcCCCCCCCHHHHHHHHHHHHhcCCCCcEEEccCCCHHHHHHHHhhccEEEeechhhH
Q 016925 307 LQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRSVLTIFMHLFVFTMKWQLVY 367 (380)
Q Consensus 307 LvIvG~g~~~~~~~~~~~L~~la~~lgl~~~V~f~G~v~~~el~~ly~~a~vf~~~~~~~~ 367 (380)
|++-|.|- ++.-..+.+++.+++.|++-.|.-. +-.++.+....+|+.+...+..|
T Consensus 7 Ll~C~~G~--sSS~l~~k~~~~~~~~gi~~~v~a~---~~~~~~~~~~~~Dvill~pqi~~ 62 (95)
T TIGR00853 7 LLLCAAGM--STSLLVNKMNKAAEEYGVPVKIAAG---SYGAAGEKLDDADVVLLAPQVAY 62 (95)
T ss_pred EEECCCch--hHHHHHHHHHHHHHHCCCcEEEEEe---cHHHHHhhcCCCCEEEECchHHH
Confidence 34445442 2334668999999999998555544 35678888899999998888775
No 176
>PF00343 Phosphorylase: Carbohydrate phosphorylase; InterPro: IPR000811 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 35 GT35 from CAZY comprises enzymes with only one known activity; glycogen and starch phosphorylase (2.4.1.1 from EC). The main role of glycogen phosphorylase (GPase) is to provide phosphorylated glucose molecules (G-1-P) []. GPase is a highly regulated allosteric enzyme. The net effect of the regulatory site allows the enzyme to operate at a variety of rates; the enzyme is not simply regulated as "on" or "off", but rather it can be thought of being set to operate at an ideal rate based on changing conditions at in the cell. The most important allosteric effector is the phosphate molecule covalently attached to Ser14. This switches GPase from the b (inactive) state to the a (active) state. Upon phosphorylation, GPase attains about 80% of its Vmax. When the enzyme is not phosphorylated, GPase activity is practically non-existent at low AMP levels. There is some apparent controversy as to the structure of GPase. All sources agree that the enzyme is multimeric, but there is apparent controversy as to the enzyme being a tetramer or a dimer. Apparently, GPase (in the a form) forms tetramers in the crystal form. The consensus seems to be that `regardless of the a or b form, GPase functions as a dimer in vivo []. The GPase monomer is best described as consisting of two domains, an N-terminal domain and a C-terminal domain []. The C-terminal domain is often referred to as the catalytic domain. It consists of a beta-sheet core surrounded by layers of helical segments []. The vitamin cofactor pyridoxal phosphate (PLP) is covalently attached to the amino acid backbone. The N-terminal domain also consists of a central beta-sheet core and is surrounded by layers of helical segments. The N-terminal domain contains different allosteric effector sites to regulate the enzyme. Bacterial phosphorylases follow the same catalytic mechanisms as their plant and animal counterparts, but differ considerably in terms of their substrate specificity and regulation. The catalytic domains are highly conserved while the regulatory sites are only poorly conserved. For maltodextrin phosphorylase from Escherichia coli the physiological role of the enzyme in the utilisation of maltidextrins is known in detail; that of all the other bacterial phosphorylases is still unclear. Roles in regulatuon of endogenous glycogen metabolism in periods of starvation, and sporulation, stress response or quick adaptation to changing environments are possible [].; GO: 0004645 phosphorylase activity, 0005975 carbohydrate metabolic process; PDB: 1YGP_B 2AW3_B 2AV6_B 1AHP_B 1QM5_A 1L5W_A 2ECP_A 2ASV_A 1L5V_B 1E4O_B ....
Probab=48.45 E-value=1.7e+02 Score=31.36 Aligned_cols=90 Identities=13% Similarity=0.107 Sum_probs=51.5
Q ss_pred CCEEEEEecCCCccChHH-HH---HHHHHHHHHccCCCCCCeEEEEcCCCCCCCHHHHHHHHHHHHh--------cCCCC
Q 016925 269 YPAIISVAQFRPEKAHPL-QL---EAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIE--------LKVDG 336 (380)
Q Consensus 269 ~~~il~VGRl~p~K~~d~-li---~A~~~l~~~~~~~~~~~~LvIvG~g~~~~~~~~~~~L~~la~~--------lgl~~ 336 (380)
.-+.+++-|+...|+..+ ++ +-+.++++.-........++++|..-. .+ ..-.++-+++.+ -.+.+
T Consensus 444 slfdv~~rR~heYKRq~LniL~ii~~y~rik~~p~~~~~Pv~~IFaGKAhP-~d-~~gK~iIk~I~~va~~in~Dp~v~~ 521 (713)
T PF00343_consen 444 SLFDVQARRFHEYKRQLLNILHIIDRYNRIKNNPNKKIRPVQFIFAGKAHP-GD-YMGKEIIKLINNVAEVINNDPEVGD 521 (713)
T ss_dssp SEEEEEES-SCCCCTHHHHHHHHHHHHHHHHHSTTSCCS-EEEEEE----T-T--HHHHHHHHHHHHHHHHHCT-TTTCC
T ss_pred hhhhhhhhhcccccccCcccccHHHHHHHHHhcccCCCCCeEEEEeccCCC-Cc-HHHHHHHHHHHHHHHHHhcChhhcc
Confidence 347889999999999888 33 444455432101112356888886521 11 222345544433 34666
Q ss_pred --cEEEccCCCHHHHHHHHhhccEEE
Q 016925 337 --NVEFYKNLLYRSVLTIFMHLFVFT 360 (380)
Q Consensus 337 --~V~f~G~v~~~el~~ly~~a~vf~ 360 (380)
+|.|+.+-+-+--..+++.||+-.
T Consensus 522 ~lkVvFlenYdvslA~~lipg~DVwl 547 (713)
T PF00343_consen 522 RLKVVFLENYDVSLAEKLIPGVDVWL 547 (713)
T ss_dssp GEEEEEETT-SHHHHHHHGGG-SEEE
T ss_pred ceeEEeecCCcHHHHHHHhhhhhhhh
Confidence 799999877777889999999955
No 177
>PRK14089 ipid-A-disaccharide synthase; Provisional
Probab=48.00 E-value=1.1e+02 Score=29.71 Aligned_cols=113 Identities=12% Similarity=0.041 Sum_probs=58.4
Q ss_pred hcCCCEEEEcCHHHHHHHHHHhCCCCceEEecCCC-CCCCCCCCCCCCCCCCCEEEEEecCC---CccChHHHHHHHHHH
Q 016925 219 GSCADLAMVNSSWTQSHIEKLWGIPDRIKRVYPPC-DTSGLQVLPLERSTEYPAIISVAQFR---PEKAHPLQLEAFSVA 294 (380)
Q Consensus 219 ~~~ad~ii~~S~~~~~~i~~~~~~~~k~~vi~~gv-d~~~~~~~~~~~~~~~~~il~VGRl~---p~K~~d~li~A~~~l 294 (380)
.+.+|.++|.=.|..+.. + .+.+.+=+|+ |. +...+... ++++.|+.++-=. -.+....+++|+.++
T Consensus 125 ~k~~d~vl~ifPFE~~~y----g--~~~~~VGhPl~d~--~~~~~~~~-~~~~~I~llPGSR~~Ei~~llP~~~~aa~~L 195 (347)
T PRK14089 125 EKYCDFLASILPFEVQFY----Q--SKATYVGHPLLDE--IKEFKKDL-DKEGTIAFMPGSRKSEIKRLMPIFKELAKKL 195 (347)
T ss_pred HHHHhhhhccCCCCHHHh----C--CCCEEECCcHHHh--hhhhhhhc-CCCCEEEEECCCCHHHHHHHHHHHHHHHHHH
Confidence 346677777555554433 3 2455565554 31 11111001 1235554444222 235556666888877
Q ss_pred HHHccCCCCCCeEEEEcCCCCCCCHHHHHHHHHHHHhcCCCCcEEEccCCCHHHHHHHHhhccEEEe
Q 016925 295 LRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRSVLTIFMHLFVFTM 361 (380)
Q Consensus 295 ~~~~~~~~~~~~LvIvG~g~~~~~~~~~~~L~~la~~lgl~~~V~f~G~v~~~el~~ly~~a~vf~~ 361 (380)
.++ ...+++.|... .+.+++...+. ..+.+.+ +..++|+.||+.+.
T Consensus 196 ~~~------~~~~~i~~a~~-------~~~i~~~~~~~---~~~~~~~-----~~~~~m~~aDlal~ 241 (347)
T PRK14089 196 EGK------EKILVVPSFFK-------GKDLKEIYGDI---SEFEISY-----DTHKALLEAEFAFI 241 (347)
T ss_pred hhc------CcEEEEeCCCc-------HHHHHHHHhcC---CCcEEec-----cHHHHHHhhhHHHh
Confidence 642 26788888531 14556655432 2444553 34578999998543
No 178
>PF12996 DUF3880: DUF based on E. rectale Gene description (DUF3880); InterPro: IPR024542 This entry represents proteins of unknown function. The Eubacterium rectale gene appears to be upregulated in the presence of Bacteroides thetaiotaomicron compared to growth in pure culture [].
Probab=47.94 E-value=58 Score=24.02 Aligned_cols=61 Identities=13% Similarity=0.181 Sum_probs=42.2
Q ss_pred HhcCCCEEEEcCHHHHHHHHHHhCCCCceEEecCCCCCCCCCCCCCC---CCCCCCEEEEEecCCC
Q 016925 218 VGSCADLAMVNSSWTQSHIEKLWGIPDRIKRVYPPCDTSGLQVLPLE---RSTEYPAIISVAQFRP 280 (380)
Q Consensus 218 ~~~~ad~ii~~S~~~~~~i~~~~~~~~k~~vi~~gvd~~~~~~~~~~---~~~~~~~il~VGRl~p 280 (380)
+...+|.|++..+...+.+++. |. .++.-.+-++|+..+.+.... ...-..-|.+||.+-+
T Consensus 15 i~~~~~~iFt~D~~~~~~~~~~-G~-~~V~yLPLAa~~~~~~p~~~~~~~~~~~~~dIsFVG~~y~ 78 (79)
T PF12996_consen 15 IANSYDYIFTFDRSFVEEYRNL-GA-ENVFYLPLAANPERFRPIPVDPEERKKYECDISFVGSLYP 78 (79)
T ss_pred hCCCCCEEEEECHHHHHHHHHc-CC-CCEEEccccCCHHHhCcccCCcccccccCCCEEEeCcCcc
Confidence 3468899999988888888874 42 466666777888888775332 1122356999998754
No 179
>PRK11890 phosphate acetyltransferase; Provisional
Probab=47.48 E-value=1.4e+02 Score=28.56 Aligned_cols=81 Identities=15% Similarity=0.049 Sum_probs=55.7
Q ss_pred hHHHHHHHHHHHHHccCCCCCCeEEEEcCCCCCCCHHHHHHHHHHHHhcCCC-CcEEEccCCCHHHHH----HHHhhccE
Q 016925 284 HPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVD-GNVEFYKNLLYRSVL----TIFMHLFV 358 (380)
Q Consensus 284 ~d~li~A~~~l~~~~~~~~~~~~LvIvG~g~~~~~~~~~~~L~~la~~lgl~-~~V~f~G~v~~~el~----~ly~~a~v 358 (380)
=+..++|.....++. =...+++|+. ++++++++++|++ +.+.+...-+.++.. .+....++
T Consensus 32 D~~vl~Aa~~a~~~g-----l~~piLvG~~---------~~I~~~a~~~g~dl~~~eII~~~~~~~~a~~av~mV~~G~A 97 (312)
T PRK11890 32 DESSLRGAVEAAQLG-----LITPILVGPR---------ARIEAVAAECGLDLSGYEIVDAPHSHAAAAKAVELVREGEA 97 (312)
T ss_pred CHHHHHHHHHHHHcC-----CEEEEEECCH---------HHHHHHHHHcCCCcCCCEEECCCChHHHHHHHHHHHHcCCC
Confidence 356788888887652 2567889962 6899999999876 445666544433322 34444444
Q ss_pred -EEeechhhHHHHHHHHHhhc
Q 016925 359 -FTMKWQLVYDEFLKLYLQKS 378 (380)
Q Consensus 359 -f~~~~~~~~~~~~~~~~~~~ 378 (380)
++|+...+-..||+--||+.
T Consensus 98 D~lmkG~i~Tt~~lra~l~~~ 118 (312)
T PRK11890 98 EALMKGSLHTDELMSAVVARD 118 (312)
T ss_pred CEEecCCcccHHHHHHHHhHh
Confidence 78888888889999888875
No 180
>cd06259 YdcF-like YdcF-like. YdcF-like is a large family of mainly bacterial proteins, with a few members found in fungi, plants, and archaea. Escherichia coli YdcF has been shown to bind S-adenosyl-L-methionine (AdoMet), but a biochemical function has not been idenitified. The family also includes Escherichia coli sanA and Salmonella typhimurium sfiX, which are involved in vancomycin resistance; sfiX may also be involved in murein synthesis.
Probab=46.89 E-value=62 Score=26.71 Aligned_cols=54 Identities=17% Similarity=0.123 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHccCCCCCCeEEEEcCCCCCCCHHHHHHHHHHHHhcCCCCcEEEccC
Q 016925 285 PLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKN 343 (380)
Q Consensus 285 d~li~A~~~l~~~~~~~~~~~~LvIvG~g~~~~~~~~~~~L~~la~~lgl~~~V~f~G~ 343 (380)
..+..|+.++++ . +..++++-|+..........+.+++.+.+.|+++.-.+...
T Consensus 21 ~R~~~a~~l~~~-~----~~~~ii~sGg~~~~~~~~ea~~m~~~l~~~gv~~~~I~~e~ 74 (150)
T cd06259 21 ERLDAAAELYRA-G----PAPKLIVSGGQGPGEGYSEAEAMARYLIELGVPAEAILLED 74 (150)
T ss_pred HHHHHHHHHHHh-C----CCCEEEEcCCCCCCCCCCHHHHHHHHHHHcCCCHHHeeecC
Confidence 455566665543 2 66777777765432123345788899999998765444443
No 181
>PRK14478 nitrogenase molybdenum-cofactor biosynthesis protein NifE; Provisional
Probab=46.35 E-value=3.3e+02 Score=27.60 Aligned_cols=90 Identities=11% Similarity=0.063 Sum_probs=56.9
Q ss_pred CCccChHHHHHHHHH-HHHHcc-CCCCCCeEEEEcCCCCCCCHHHHHHHHHHHHhcCCCCcEEEccCCCHHHHHHHHhhc
Q 016925 279 RPEKAHPLQLEAFSV-ALRKLD-ADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRSVLTIFMHL 356 (380)
Q Consensus 279 ~p~K~~d~li~A~~~-l~~~~~-~~~~~~~LvIvG~g~~~~~~~~~~~L~~la~~lgl~~~V~f~G~v~~~el~~ly~~a 356 (380)
+...|++...+++.. +..... +...+-.+-|+|+.....+ .++|+++.+++|+.-+..|.|.-+-+|+.. +.+|
T Consensus 164 ~~~~G~~~a~~al~~~l~~~~~~~~~~~~~VNiiG~~~~~gd---~~elk~lL~~~Gl~v~~~~~~~~s~eei~~-~~~A 239 (475)
T PRK14478 164 NKNLGNKLAGEALLDHVIGTVEPEDTTPYDINILGEYNLAGE---LWQVKPLLDRLGIRVVACITGDARYDDVAS-AHRA 239 (475)
T ss_pred chhhhHHHHHHHHHHHHhccCCccCCCCCeEEEEeCCCCCCC---HHHHHHHHHHcCCeEEEEcCCCCCHHHHHh-cccC
Confidence 356788888887764 432211 1113456888886532222 368999999999998888998877778876 6666
Q ss_pred cE-EEe-e-chhhHHHHHH
Q 016925 357 FV-FTM-K-WQLVYDEFLK 372 (380)
Q Consensus 357 ~v-f~~-~-~~~~~~~~~~ 372 (380)
.+ +++ + ......++|+
T Consensus 240 ~lniv~~~~~~~~~A~~L~ 258 (475)
T PRK14478 240 RANMMVCSGAMINLARKME 258 (475)
T ss_pred cEEEEEcHHHHHHHHHHHH
Confidence 65 323 2 2334555543
No 182
>TIGR00322 diphth2_R diphthamide biosynthesis protein 2-related domain. Because archaeal species are known to have the diphthamide modification to the conserved His of archaeal and eukaryotic EF-2, it may be that the lone homolog of YKL191W in M. jannaschii, A. fulgidus, and M. thermoautotrophicum is orthologous. However, each of these is considerably shorter than YKL191W and seems more closely related to the uncharacterized protein YIL103W than to YKL191W.
Probab=44.61 E-value=49 Score=31.92 Aligned_cols=57 Identities=14% Similarity=0.025 Sum_probs=44.5
Q ss_pred CCeEEEEcCCCCCCCHHHHHHHHHHHHhcCCCCcEEEccCCCHHHHHHHHhhccEEEe
Q 016925 304 RPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRSVLTIFMHLFVFTM 361 (380)
Q Consensus 304 ~~~LvIvG~g~~~~~~~~~~~L~~la~~lgl~~~V~f~G~v~~~el~~ly~~a~vf~~ 361 (380)
..-=+|+|.-......+..+.|++++++.|....+...|.++.+.|..+ ..-|+||+
T Consensus 233 ~~vGIlvgTl~~q~~~~~~~~l~~ll~~~gkk~y~i~~~~in~~kL~nf-~eiD~fV~ 289 (332)
T TIGR00322 233 KKFGVVLSSKGGQGRLRLAKNLKKNLEEAGKTVLIILLSNVSPAKLLMF-DQIDVFVQ 289 (332)
T ss_pred CEEEEEEecCccCCCHHHHHHHHHHHHHcCCcEEEEEeCCCCHHHHhCC-CCcCEEEE
Confidence 3345788865444567778899999999999999999999998888655 56888775
No 183
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=44.01 E-value=1.2e+02 Score=29.42 Aligned_cols=72 Identities=17% Similarity=0.083 Sum_probs=41.5
Q ss_pred CEEEEEecCCCccChHHHHHHHHHHHHHccCCCCCCeE-EEEcCCCCCCCHHHHHHHHHHHHhcCCCCcEEEccCCCHHH
Q 016925 270 PAIISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRL-QFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRS 348 (380)
Q Consensus 270 ~~il~VGRl~p~K~~d~li~A~~~l~~~~~~~~~~~~L-vIvG~g~~~~~~~~~~~L~~la~~lgl~~~V~f~G~v~~~e 348 (380)
.++++.|.....+. + +++.+.....+ .+.++ +.+|.+.. .+.++ .++++|.+.+++++.
T Consensus 227 ~v~vs~Gs~~~~~~-~-~~~~~~~al~~-----~~~~~i~~~g~~~~------~~~~~------~~~~~v~~~~~~p~~- 286 (392)
T TIGR01426 227 VVLISLGTVFNNQP-S-FYRTCVEAFRD-----LDWHVVLSVGRGVD------PADLG------ELPPNVEVRQWVPQL- 286 (392)
T ss_pred EEEEecCccCCCCH-H-HHHHHHHHHhc-----CCCeEEEEECCCCC------hhHhc------cCCCCeEEeCCCCHH-
Confidence 46788888654332 2 44433333332 24444 45564321 11222 256899999999853
Q ss_pred HHHHHhhccEEEeec
Q 016925 349 VLTIFMHLFVFTMKW 363 (380)
Q Consensus 349 l~~ly~~a~vf~~~~ 363 (380)
++++.||+++...
T Consensus 287 --~ll~~~~~~I~hg 299 (392)
T TIGR01426 287 --EILKKADAFITHG 299 (392)
T ss_pred --HHHhhCCEEEECC
Confidence 6799999988643
No 184
>cd02168 NMNAT_Nudix Nicotinamide/nicotinate mononucleotide adenylyltransferase of bifunctional proteins, also containing a Nudix hydrolase domain. N-terminal NMNAT (Nicotinamide/nicotinate mononucleotide adenylyltransferase) domain of a novel bifunctional enzyme endowed with NMN adenylyltransferase and Nudix hydrolase activities. This domain is highly homologous to the archeal NMN adenyltransferase that catalyzes NAD synthesis from NMN and ATP. NMNAT is an essential enzyme in the biosynthesis of NAD(+) and NADP(+). Nicotinamide-nucleotide adenylyltransferase synthesizes NAD via the salvage pathway, while nicotinate-nucleotide adenylyltransferase synthesizes the immediate precursor of NAD via the de novo pathway. The C-terminal domain of this enzyme shares homology with the archaeal ADP-ribose pyrophosphatase, a member of the 'Nudix' hydrolase family.
Probab=43.68 E-value=95 Score=27.03 Aligned_cols=62 Identities=19% Similarity=0.352 Sum_probs=37.1
Q ss_pred EEEEecCCC-ccChHHHHHHHHHHHHHccCCCCCCeEEE-EcCCCCC-------CCHHHHHHHHHHHHhcCCC-CcEEEc
Q 016925 272 IISVAQFRP-EKAHPLQLEAFSVALRKLDADLPRPRLQF-VGSCRNK-------SDEERLQSLKDKSIELKVD-GNVEFY 341 (380)
Q Consensus 272 il~VGRl~p-~K~~d~li~A~~~l~~~~~~~~~~~~LvI-vG~g~~~-------~~~~~~~~L~~la~~lgl~-~~V~f~ 341 (380)
-++.||++| .+||..+++.+... -+ +++| +|+.... ...+..+-++....+.|++ ++|.+.
T Consensus 2 ~l~~GrF~P~H~GHl~~i~~a~~~--------~~-~vii~i~s~~~~~~~~~p~~~~eR~~mi~~~~~~~~~~~~rv~i~ 72 (181)
T cd02168 2 LVYIGRFQPFHNGHLAVVLIALEK--------AK-KVIILIGSARTARNIKNPWTSEEREVMIEAALSDAGADLARVHFR 72 (181)
T ss_pred eEEeeccCCCCHHHHHHHHHHHHH--------CC-eEEEEeCCCCCCCCCCCCcCHHHHHHHHHHHHhccCCCcceEEEE
Confidence 479999997 89998888776643 23 5555 6765211 1223334445545676664 466665
Q ss_pred c
Q 016925 342 K 342 (380)
Q Consensus 342 G 342 (380)
.
T Consensus 73 p 73 (181)
T cd02168 73 P 73 (181)
T ss_pred e
Confidence 5
No 185
>COG0058 GlgP Glucan phosphorylase [Carbohydrate transport and metabolism]
Probab=43.51 E-value=98 Score=33.23 Aligned_cols=93 Identities=16% Similarity=0.103 Sum_probs=59.0
Q ss_pred CCCEEEEEecCCCccChHHHHHHHHHHHHHcc-CCCCCCeEEEEcCCCCC--CCHHHHHHHHHHHHhcCCCCcEEEccCC
Q 016925 268 EYPAIISVAQFRPEKAHPLQLEAFSVALRKLD-ADLPRPRLQFVGSCRNK--SDEERLQSLKDKSIELKVDGNVEFYKNL 344 (380)
Q Consensus 268 ~~~~il~VGRl~p~K~~d~li~A~~~l~~~~~-~~~~~~~LvIvG~g~~~--~~~~~~~~L~~la~~lgl~~~V~f~G~v 344 (380)
+..+++++=|+...|+..+.+.-...+.+... +..|.+.++++|..-.. ...+....+...|+..+...+|.|+.+=
T Consensus 486 ~~lfd~~~kRiheYKRq~Lnl~~i~~ly~~i~~d~~prv~~iFaGKAhP~y~~aK~iIk~I~~~a~~in~~lkVvFl~nY 565 (750)
T COG0058 486 NALFDGQARRIHEYKRQLLNLLDIERLYRILKEDWVPRVQIIFAGKAHPADYAAKEIIKLINDVADVINNKLKVVFLPNY 565 (750)
T ss_pred CcceeeeehhhhhhhhhHHhHhhHHHHHHHHhcCCCCceEEEEeccCCCcchHHHHHHHHHHHHHHhhcccceEEEeCCC
Confidence 35688999999999999887766655554432 22355666777754211 1122223344445555556789999976
Q ss_pred CHHHHHHHHhhccEEE
Q 016925 345 LYRSVLTIFMHLFVFT 360 (380)
Q Consensus 345 ~~~el~~ly~~a~vf~ 360 (380)
+-+--..++..||+-.
T Consensus 566 dvslA~~iipa~Dvwe 581 (750)
T COG0058 566 DVSLAELLIPAADVWE 581 (750)
T ss_pred ChhHHHhhcccccccc
Confidence 6656678899999843
No 186
>cd04300 GT1_Glycogen_Phosphorylase This is a family of oligosaccharide phosphorylases. It includes yeast and mammalian glycogen phosphorylases, plant starch/glucan phosphorylase, as well as the maltodextrin phosphorylases of bacteria. The members of this family catalyze the breakdown of oligosaccharides into glucose-1-phosphate units. They are important allosteric enzymes in carbohydrate metabolism. The allosteric control mechanisms of yeast and mammalian members of this family are different from that of bacterial members. The members of this family belong to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=42.76 E-value=1.1e+02 Score=33.27 Aligned_cols=89 Identities=15% Similarity=0.031 Sum_probs=56.7
Q ss_pred CCCEEEEEecCCCccChHH-HHHHHHHHHHHccCCCC-----CCeEEEEcCCCCCCCHHHHHHHHHHHHhc--------C
Q 016925 268 EYPAIISVAQFRPEKAHPL-QLEAFSVALRKLDADLP-----RPRLQFVGSCRNKSDEERLQSLKDKSIEL--------K 333 (380)
Q Consensus 268 ~~~~il~VGRl~p~K~~d~-li~A~~~l~~~~~~~~~-----~~~LvIvG~g~~~~~~~~~~~L~~la~~l--------g 333 (380)
+.-+.+++=|+...|+..+ ++..+.++.+-. ..| ...++++|..-.. . ....++-+++... .
T Consensus 529 ~slfdvq~KR~heYKRq~LNil~ii~~y~~i~--~~p~~~~~P~~~IFaGKAaP~-y-~~aK~iIklI~~va~~in~Dp~ 604 (797)
T cd04300 529 DSLFDVQVKRIHEYKRQLLNVLHIIHLYNRIK--ENPNADIVPRTFIFGGKAAPG-Y-YMAKLIIKLINAVADVVNNDPD 604 (797)
T ss_pred CccEEEEeeechhhhhhhhHHHhhHHHHHHHH--hCCCcCCCCeEEEEeccCCCC-c-HHHHHHHHHHHHHHHHhccChh
Confidence 4457899999999999999 666655543221 113 2567777765321 1 2223444444433 3
Q ss_pred CCC--cEEEccCCCHHHHHHHHhhccEEE
Q 016925 334 VDG--NVEFYKNLLYRSVLTIFMHLFVFT 360 (380)
Q Consensus 334 l~~--~V~f~G~v~~~el~~ly~~a~vf~ 360 (380)
+.+ +|.|+.+-.-+--..++.+||+-.
T Consensus 605 v~~~lkVVFlenY~VslAe~iipaaDvse 633 (797)
T cd04300 605 VGDKLKVVFLPNYNVSLAEKIIPAADLSE 633 (797)
T ss_pred cCCceEEEEeCCCChHHHHHhhhhhhhhh
Confidence 555 799999876667778999999843
No 187
>COG1922 WecG Teichoic acid biosynthesis proteins [Cell envelope biogenesis, outer membrane]
Probab=42.59 E-value=2.1e+02 Score=26.49 Aligned_cols=132 Identities=14% Similarity=0.076 Sum_probs=70.1
Q ss_pred HHhcCCCEEEEcCHHHHHHHHHHhCCCCceEEecCCCCCCC-CCCCCCCCCCCCCEEEEEecCCCccChHHHHHHHHHHH
Q 016925 217 LVGSCADLAMVNSSWTQSHIEKLWGIPDRIKRVYPPCDTSG-LQVLPLERSTEYPAIISVAQFRPEKAHPLQLEAFSVAL 295 (380)
Q Consensus 217 ~~~~~ad~ii~~S~~~~~~i~~~~~~~~k~~vi~~gvd~~~-~~~~~~~~~~~~~~il~VGRl~p~K~~d~li~A~~~l~ 295 (380)
.+++.||.|+..+-.+....++.++.+.+.. -+|+|.-. +-.... + +...|.++|- --+-+-+|.+.+.
T Consensus 60 ~~i~~A~li~pDG~gvV~~ar~~~g~~~~~r--v~G~Dl~~~Ll~~a~-~--~~~~vfllGg-----kp~V~~~a~~~l~ 129 (253)
T COG1922 60 EILNQADLILPDGIGVVRAARRLLGQPLPER--VAGTDLVEALLKRAA-E--EGKRVFLLGG-----KPGVAEQAAAKLR 129 (253)
T ss_pred HHHhhcCEEccCchhHHHHHHHHhCccCccc--CChHHHHHHHHHHhC-c--cCceEEEecC-----CHHHHHHHHHHHH
Confidence 3456899999999888888878777543222 26776421 111111 1 1245666662 2344445555565
Q ss_pred HHccCCCCCCeEEEEc--CCCCCCCHHHHHHHHHHHHhcCCCCcEEEccC-CCHHHH--HHHHhhccE-EEeechhhHH
Q 016925 296 RKLDADLPRPRLQFVG--SCRNKSDEERLQSLKDKSIELKVDGNVEFYKN-LLYRSV--LTIFMHLFV-FTMKWQLVYD 368 (380)
Q Consensus 296 ~~~~~~~~~~~LvIvG--~g~~~~~~~~~~~L~~la~~lgl~~~V~f~G~-v~~~el--~~ly~~a~v-f~~~~~~~~~ 368 (380)
++. |. +.|+| +|.-... ..+.+.+.+.+.+ .+|.|.|. +|.+|. .+.....+. ..|--...||
T Consensus 130 ~~~----p~--l~ivg~h~GYf~~~--e~~~i~~~I~~s~--pdil~VgmG~P~QE~wi~~~~~~~~~~v~igVGg~fD 198 (253)
T COG1922 130 AKY----PG--LKIVGSHDGYFDPE--EEEAIVERIAASG--PDILLVGMGVPRQEIWIARNRQQLPVAVAIGVGGSFD 198 (253)
T ss_pred HHC----CC--ceEEEecCCCCChh--hHHHHHHHHHhcC--CCEEEEeCCCchhHHHHHHhHHhcCCceEEeccceEE
Confidence 543 43 55555 4432212 1246666666654 56888885 576663 333333332 3444444443
No 188
>cd01968 Nitrogenase_NifE_I Nitrogenase_NifE_I: a subgroup of the NifE subunit of the NifEN complex: NifE forms an alpha2beta2 tetramer with NifN. NifE and NifN are structurally homologous to nitrogenase MoFe protein alpha and beta subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The NifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this NifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=42.31 E-value=1.5e+02 Score=29.27 Aligned_cols=88 Identities=10% Similarity=0.022 Sum_probs=54.2
Q ss_pred ccChHHHHHHHHHHHHHccCC--CCCCeEEEEcCCCCCCCHHHHHHHHHHHHhcCCCCcEEEccCCCHHHHHHHHhhccE
Q 016925 281 EKAHPLQLEAFSVALRKLDAD--LPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRSVLTIFMHLFV 358 (380)
Q Consensus 281 ~K~~d~li~A~~~l~~~~~~~--~~~~~LvIvG~g~~~~~~~~~~~L~~la~~lgl~~~V~f~G~v~~~el~~ly~~a~v 358 (380)
..|++.+++++........+. ..+-.+-|+|+..... + .++|+++.+++|++-+..|.|..+-+|+... .+|.+
T Consensus 133 ~~G~~~a~~~l~~~l~~~~~~~~~~~~~VNiig~~~~~~--d-~~el~~lL~~~Gl~v~~~~~~~~s~eei~~~-~~A~l 208 (410)
T cd01968 133 NLGNKLACEALLDHVIGTEEPEPLTPYDINLIGEFNVAG--E-LWGVKPLLEKLGIRVLASITGDSRVDEIRRA-HRAKL 208 (410)
T ss_pred hHHHHHHHHHHHHHhcCCCCcccCCCCcEEEECCCCCcc--c-HHHHHHHHHHcCCeEEEEeCCCCCHHHHHhh-hhCcE
Confidence 467888887776543211000 0145688888653322 2 4689999999999988889998887777664 44444
Q ss_pred -EEee--chhhHHHHHH
Q 016925 359 -FTMK--WQLVYDEFLK 372 (380)
Q Consensus 359 -f~~~--~~~~~~~~~~ 372 (380)
+++. ......++|+
T Consensus 209 niv~~~~~~~~~a~~L~ 225 (410)
T cd01968 209 NVVQCSKSMIYLARKME 225 (410)
T ss_pred EEEEchhHHHHHHHHHH
Confidence 4432 2334445543
No 189
>PF01531 Glyco_transf_11: Glycosyl transferase family 11; InterPro: IPR002516 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 11 GT11 from CAZY comprises enzymes with only one known activity; galactoside 2-L-fucosyltransferase (2.4.1.69 from EC). Some of the proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Galactoside 2-L-fucosyltransferase 1 (2.4.1.69 from EC) and Galactoside 2-L-fucosyltransferase 2 (2.4.1.69 from EC) belong to the Hh blood group system and are associated with H/h and Se/se antigens.; GO: 0008107 galactoside 2-alpha-L-fucosyltransferase activity, 0005975 carbohydrate metabolic process, 0016020 membrane
Probab=42.16 E-value=2.9e+02 Score=25.98 Aligned_cols=78 Identities=17% Similarity=0.221 Sum_probs=53.7
Q ss_pred hHHHHHHHHHHHHHccCCCCCCeEEEEcCCCCCCCHHHHHHHHHHHHhcCCCCcEEEccC-CCHHHHHHHHhhccEEEee
Q 016925 284 HPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKN-LLYRSVLTIFMHLFVFTMK 362 (380)
Q Consensus 284 ~d~li~A~~~l~~~~~~~~~~~~LvIvG~g~~~~~~~~~~~L~~la~~lgl~~~V~f~G~-v~~~el~~ly~~a~vf~~~ 362 (380)
.+...+|+..+.++. ++..++|.++. . +.+++.... ..+.+.+.+. -+.+|+. +++.|+.++.+
T Consensus 190 ~~Yy~~Ai~~i~~~~----~~~~f~ifSDD-----~---~w~k~~l~~--~~~~~~~~~~~~~~~Dl~-lms~C~~~Iis 254 (298)
T PF01531_consen 190 KDYYKKAIEYIREKV----KNPKFFIFSDD-----I---EWCKENLKF--SNGDVYFSGNNSPYEDLY-LMSQCKHFIIS 254 (298)
T ss_pred HHHHHHHHHHHHHhC----CCCEEEEEcCC-----H---HHHHHHHhh--cCCcEEEECCCCHHHHHH-HHHhCCcEEEC
Confidence 577889999987764 78999999974 2 333443333 2345677775 4566665 78999999998
Q ss_pred chhhHHHHHHHHHhhc
Q 016925 363 WQLVYDEFLKLYLQKS 378 (380)
Q Consensus 363 ~~~~~~~~~~~~~~~~ 378 (380)
.-.|+-+. -||.+.
T Consensus 255 -nSTFswW~-a~L~~~ 268 (298)
T PF01531_consen 255 -NSTFSWWA-AYLSKN 268 (298)
T ss_pred -CChHHHHH-HHHCCC
Confidence 56777655 455543
No 190
>PRK01713 ornithine carbamoyltransferase; Provisional
Probab=41.53 E-value=3.3e+02 Score=26.23 Aligned_cols=120 Identities=5% Similarity=-0.070 Sum_probs=67.8
Q ss_pred hcCCCEEEE--cCHHHHHHHHHHhCCCCceEEecCCCCCCCCCCC----------CCCC-CCCCCEEEEEecCCCccChH
Q 016925 219 GSCADLAMV--NSSWTQSHIEKLWGIPDRIKRVYPPCDTSGLQVL----------PLER-STEYPAIISVAQFRPEKAHP 285 (380)
Q Consensus 219 ~~~ad~ii~--~S~~~~~~i~~~~~~~~k~~vi~~gvd~~~~~~~----------~~~~-~~~~~~il~VGRl~p~K~~d 285 (380)
.+.+|.|+. .++.+.+++.+... +-|| |+-+ ....|. .... ..++-.|.+||-+.. |
T Consensus 99 s~y~D~iv~R~~~~~~~~~~a~~~~----vPVI-Na~~-~~~HPtQaL~Dl~Ti~e~~g~~l~gl~ia~vGD~~~--~-- 168 (334)
T PRK01713 99 GRMYDAIEYRGFKQSIVNELAEYAG----VPVF-NGLT-DEFHPTQMLADVLTMIENCDKPLSEISYVYIGDARN--N-- 168 (334)
T ss_pred HHhCCEEEEEcCchHHHHHHHHhCC----CCEE-ECCC-CCCChHHHHHHHHHHHHHcCCCcCCcEEEEECCCcc--C--
Confidence 356898885 56666666665433 2244 5543 334441 0001 124568999996532 2
Q ss_pred HHHHHHHHHHHHccCCCCCCeEEEEcCCCCCCCHHHHHHHHHHHHhcCCCCcEEEccCCCHHHHHHHHhhccEEEe
Q 016925 286 LQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRSVLTIFMHLFVFTM 361 (380)
Q Consensus 286 ~li~A~~~l~~~~~~~~~~~~LvIvG~g~~~~~~~~~~~L~~la~~lgl~~~V~f~G~v~~~el~~ly~~a~vf~~ 361 (380)
+.+++..+... -+..+.+++........+..+..++.+++.|. .|... +++.+.++.||+..+
T Consensus 169 -v~~Sl~~~~~~-----~g~~v~~~~P~~~~p~~~~~~~~~~~~~~~g~--~~~~~-----~d~~~a~~~aDvVyt 231 (334)
T PRK01713 169 -MGNSLLLIGAK-----LGMDVRICAPKALLPEASLVEMCEKFAKESGA--RITVT-----DDIDKAVKGVDFVHT 231 (334)
T ss_pred -HHHHHHHHHHH-----cCCEEEEECCchhcCCHHHHHHHHHHHHHcCC--eEEEE-----cCHHHHhCCCCEEEE
Confidence 34444443333 36789999964332333444555666666664 35543 367899999999766
No 191
>TIGR02093 P_ylase glycogen/starch/alpha-glucan phosphorylases. This family consists of phosphorylases. Members use phosphate to break alpha 1,4 linkages between pairs of glucose residues at the end of long glucose polymers, releasing alpha-D-glucose 1-phosphate. The nomenclature convention is to preface the name according to the natural substrate, as in glycogen phosphorylase, starch phosphorylase, maltodextrin phosphorylase, etc. Name differences among these substrates reflect differences in patterns of branching with alpha 1,6 linkages. Members include allosterically regulated and unregulated forms. A related family, TIGR02094, contains examples known to act well on particularly small alpha 1,4 glucans, as may be found after import from exogenous sources.
Probab=41.39 E-value=74 Score=34.40 Aligned_cols=89 Identities=15% Similarity=0.020 Sum_probs=59.4
Q ss_pred CCCEEEEEecCCCccChHH-HHHHHHHHHHHccCCCC-----CCeEEEEcCCCCCCCHHHHHHHHHHHHhcC--------
Q 016925 268 EYPAIISVAQFRPEKAHPL-QLEAFSVALRKLDADLP-----RPRLQFVGSCRNKSDEERLQSLKDKSIELK-------- 333 (380)
Q Consensus 268 ~~~~il~VGRl~p~K~~d~-li~A~~~l~~~~~~~~~-----~~~LvIvG~g~~~~~~~~~~~L~~la~~lg-------- 333 (380)
+..+.+++=|+...|+..+ ++..+.++.+-. ..| ...++++|..-.. -....++-+++.+..
T Consensus 526 ~slfdvq~KR~heYKRq~LNil~ii~~y~~i~--~~p~~~~~P~~~IFaGKAaP~--y~~aK~iIklI~~va~~iN~Dp~ 601 (794)
T TIGR02093 526 NSIFDVQVKRLHEYKRQLLNVLHVIYLYNRIK--EDPPKDIVPRTVIFGGKAAPG--YHMAKLIIKLINSVAEVVNNDPA 601 (794)
T ss_pred cccchhhheechhhhHHHHHHhhhHHHHHHHH--hCCCcCCCCeEEEEEecCCCC--cHHHHHHHHHHHHHHHHhccChh
Confidence 3457788899999999999 666655543221 113 3467888865321 123356666666555
Q ss_pred CCC--cEEEccCCCHHHHHHHHhhccEEE
Q 016925 334 VDG--NVEFYKNLLYRSVLTIFMHLFVFT 360 (380)
Q Consensus 334 l~~--~V~f~G~v~~~el~~ly~~a~vf~ 360 (380)
+.+ +|.|+.+-+-+--..++..||+-.
T Consensus 602 v~~~lkVVFlenY~VslAe~iipaaDvse 630 (794)
T TIGR02093 602 VGDKLKVVFVPNYNVSLAELIIPAADLSE 630 (794)
T ss_pred hCCceeEEEeCCCChHHHHHhhhhhhhhh
Confidence 666 899999876667778999999843
No 192
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=41.05 E-value=1.2e+02 Score=28.80 Aligned_cols=82 Identities=10% Similarity=0.054 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHHccCCCCCCeEEEEcCCCCCCCHHHHHHHHHHHHhcCCCC-cEEEccCCCHHHHHHHHhhc--c----
Q 016925 285 PLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDG-NVEFYKNLLYRSVLTIFMHL--F---- 357 (380)
Q Consensus 285 d~li~A~~~l~~~~~~~~~~~~LvIvG~g~~~~~~~~~~~L~~la~~lgl~~-~V~f~G~v~~~el~~ly~~a--~---- 357 (380)
+.+-+..+.++.+. ...|..-.+.+|+. +.+..|.+..++.++++|+.- .+.+...++.+|+.+.+.+. |
T Consensus 16 ~~i~~~v~~l~~~~-g~~p~La~i~vg~~--~~s~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~i~~lN~d~~V~ 92 (296)
T PRK14188 16 ATVAAEVARLKAAH-GVTPGLAVVLVGED--PASQVYVRSKGKQTKEAGMASFEHKLPADTSQAELLALIARLNADPAIH 92 (296)
T ss_pred HHHHHHHHHHHHcc-CCCCeEEEEEeCCC--hhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCc
Confidence 33444445443321 01365666777764 456789999999999999984 45577789999999888854 3
Q ss_pred -EEEe-echhhHHH
Q 016925 358 -VFTM-KWQLVYDE 369 (380)
Q Consensus 358 -vf~~-~~~~~~~~ 369 (380)
++++ |-.+++++
T Consensus 93 GIlvq~Plp~~~~~ 106 (296)
T PRK14188 93 GILVQLPLPKHLDS 106 (296)
T ss_pred EEEEeCCCCCCCCH
Confidence 2333 54556654
No 193
>TIGR00272 DPH2 diphthamide biosynthesis protein 2. This protein has been shown in Saccharomyces cerevisiae to be one of several required for the modification of a particular histidine residue of translation elongation factor 2 to diphthamide. This modified site can then become the target for ADP-ribosylation by diphtheria toxin.
Probab=41.02 E-value=55 Score=33.44 Aligned_cols=57 Identities=9% Similarity=0.003 Sum_probs=44.9
Q ss_pred CCeEEEEcCCCCCCCHHHHHHHHHHHHhcCCCCcEEEccCCCHHHHHHHHhhccEEEe
Q 016925 304 RPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRSVLTIFMHLFVFTM 361 (380)
Q Consensus 304 ~~~LvIvG~g~~~~~~~~~~~L~~la~~lgl~~~V~f~G~v~~~el~~ly~~a~vf~~ 361 (380)
+.-=+|+|.-......+..+.|++++++.|....+...|.++.+.|+.+ ...|+||+
T Consensus 282 ~~~GIlVgTL~~q~~~~ii~~l~~li~~~GkK~yl~~vgkinpaKLaNF-~eID~fV~ 338 (496)
T TIGR00272 282 GCIGIVVGTLGVRNTRETINELRKMIKTAGKKHYLFVVGKPNPAKLANF-EDIDIFVL 338 (496)
T ss_pred CEEEEEEecCccCCCHHHHHHHHHHHHHcCCcEEEEEeCCCCHHHHhCC-CCCCEEEE
Confidence 3445888865555667788899999999999999999999988888655 46888875
No 194
>TIGR00288 conserved hypothetical protein TIGR00288. This family of orthologs is restricted to but universal among the completed archaeal genomes so far. Eubacterial proteins showing at least local homology include slr1870 from Synechocystis PCC6803 and two proteins from Aquifex aeolicusr, none of which is characterized.
Probab=40.94 E-value=90 Score=26.69 Aligned_cols=67 Identities=6% Similarity=-0.094 Sum_probs=44.5
Q ss_pred cChHHHHHHHHHHHHHccCCCCCCeEEEEcCCCCCCCHHHHHHHHHHHHhcCCCCcEEEccCCCHHHHHHHHhhccEEEe
Q 016925 282 KAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRSVLTIFMHLFVFTM 361 (380)
Q Consensus 282 K~~d~li~A~~~l~~~~~~~~~~~~LvIvG~g~~~~~~~~~~~L~~la~~lgl~~~V~f~G~v~~~el~~ly~~a~vf~~ 361 (380)
=.++..|+|+..+... .-|.-.++-|++ + ...|-+.+++.|. .|.-.|. +..--..+-++||-|+.
T Consensus 89 ~Dv~laIDame~~~~~----~iD~~vLvSgD~------D-F~~Lv~~lre~G~--~V~v~g~-~~~ts~~L~~acd~FI~ 154 (160)
T TIGR00288 89 VDVRMAVEAMELIYNP----NIDAVALVTRDA------D-FLPVINKAKENGK--ETIVIGA-EPGFSTALQNSADIAII 154 (160)
T ss_pred ccHHHHHHHHHHhccC----CCCEEEEEeccH------h-HHHHHHHHHHCCC--EEEEEeC-CCCChHHHHHhcCeEEe
Confidence 4588999999988543 256666777764 2 2456666667665 4888883 22234478899998875
Q ss_pred e
Q 016925 362 K 362 (380)
Q Consensus 362 ~ 362 (380)
-
T Consensus 155 L 155 (160)
T TIGR00288 155 L 155 (160)
T ss_pred C
Confidence 3
No 195
>TIGR01278 DPOR_BchB light-independent protochlorophyllide reductase, B subunit. This enzyme describes the B subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme. This subunit shows homology to the nitrogenase molybdenum-iron protein. It catalyzes a step in bacteriochlorophyll biosynthesis.
Probab=40.91 E-value=2.2e+02 Score=29.18 Aligned_cols=72 Identities=13% Similarity=0.145 Sum_probs=49.9
Q ss_pred CCeEEEEcCCCCC-CCHHHHHHHHHHHHhcCCCCcEEEccCCCHHHHHHHHhhccEEEeechhhHHHHHHHHHhh
Q 016925 304 RPRLQFVGSCRNK-SDEERLQSLKDKSIELKVDGNVEFYKNLLYRSVLTIFMHLFVFTMKWQLVYDEFLKLYLQK 377 (380)
Q Consensus 304 ~~~LvIvG~g~~~-~~~~~~~~L~~la~~lgl~~~V~f~G~v~~~el~~ly~~a~vf~~~~~~~~~~~~~~~~~~ 377 (380)
...+-|+|..... ....-..+|+++.+++|++-++.|.+.-+-+|+..+ .+|++=+...+| +|..+-.||++
T Consensus 158 ~~~VNIiG~~~l~~~~~~D~~elkrlL~~lGi~vn~v~p~g~s~~dl~~l-~~A~~NIv~~~~-~g~~~A~~Le~ 230 (511)
T TIGR01278 158 KPSVNLLGPASLGFHHRHDLIELRRLLKTLGIEVNVVAPWGASIADLARL-PAAWLNICPYRE-IGLMAAEYLKE 230 (511)
T ss_pred CCcEEEEeCCCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHhc-ccCcEEEEechH-HHHHHHHHHHH
Confidence 3457788864211 122335799999999999999999998777788664 677765555554 66666677765
No 196
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=40.34 E-value=1e+02 Score=30.00 Aligned_cols=22 Identities=9% Similarity=-0.012 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHhCCCceEEEEcCC
Q 016925 53 VLWCAVKAIQEESPDLDCIVYTGD 76 (380)
Q Consensus 53 vl~~la~~L~~~g~~~~v~v~t~~ 76 (380)
=++.++++|+++| |+|+++|+.
T Consensus 11 P~l~lA~~L~~~G--h~V~~~~~~ 32 (392)
T TIGR01426 11 PTLGVVEELVARG--HRVTYATTE 32 (392)
T ss_pred ccHHHHHHHHhCC--CeEEEEeCH
Confidence 3568999999999 888888753
No 197
>PF02951 GSH-S_N: Prokaryotic glutathione synthetase, N-terminal domain; InterPro: IPR004215 Prokaryotic glutathione synthetase 6.3.2.3 from EC (glutathione synthase) catalyses the conversion of gamma-L-glutamyl-L-cysteine and glycine to orthophosphate and glutathione in the presence of ATP. This is the second step in glutathione biosynthesis. The enzyme is inhibited by 7,8-dihydrofolate, methotrexate and trimethoprim. This domain is the N terminus of the enzyme.; GO: 0004363 glutathione synthase activity, 0006750 glutathione biosynthetic process; PDB: 1GLV_A 1GSA_A 1GSH_A 2GLT_A.
Probab=39.96 E-value=44 Score=27.04 Aligned_cols=37 Identities=11% Similarity=0.129 Sum_probs=21.2
Q ss_pred cEEEEECCCCCCC-CChhHHHHHHHHHHHHhCCCceEEEEc
Q 016925 35 TSVAFFHPNTNDG-GGGERVLWCAVKAIQEESPDLDCIVYT 74 (380)
Q Consensus 35 ~~I~~~~p~~~~~-GG~ervl~~la~~L~~~g~~~~v~v~t 74 (380)
|||+|+.+-+..- =+.+ ....++.+-+++| |+|..++
T Consensus 1 Mki~fvmDpi~~i~~~kD-TT~alm~eAq~RG--hev~~~~ 38 (119)
T PF02951_consen 1 MKIAFVMDPIESIKPYKD-TTFALMLEAQRRG--HEVFYYE 38 (119)
T ss_dssp -EEEEEES-GGG--TTT--HHHHHHHHHHHTT---EEEEE-
T ss_pred CeEEEEeCCHHHCCCCCC-hHHHHHHHHHHCC--CEEEEEE
Confidence 7999998766331 1122 3346777788999 8887765
No 198
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=39.92 E-value=2.1e+02 Score=23.65 Aligned_cols=101 Identities=11% Similarity=-0.008 Sum_probs=52.9
Q ss_pred eEEecCCCCCCCCCCCCCCCCCCCCEEEEEecCCCccChHHHHHHHHHHHHHccCCCCCCeEEEEcCCCCCCCHHHHHHH
Q 016925 246 IKRVYPPCDTSGLQVLPLERSTEYPAIISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSL 325 (380)
Q Consensus 246 ~~vi~~gvd~~~~~~~~~~~~~~~~~il~VGRl~p~K~~d~li~A~~~l~~~~~~~~~~~~LvIvG~g~~~~~~~~~~~L 325 (380)
.+|++-|+|...-.-..... ..++-++.++-+.- ...+.+-+....+.++. ..+. .+++|+...-.. +-.++.
T Consensus 30 feVi~LG~~v~~e~~v~aa~-~~~adiVglS~l~~-~~~~~~~~~~~~l~~~g---l~~~-~vivGG~~vi~~-~d~~~~ 102 (134)
T TIGR01501 30 FNVVNLGVLSPQEEFIKAAI-ETKADAILVSSLYG-HGEIDCKGLRQKCDEAG---LEGI-LLYVGGNLVVGK-QDFPDV 102 (134)
T ss_pred CEEEECCCCCCHHHHHHHHH-HcCCCEEEEecccc-cCHHHHHHHHHHHHHCC---CCCC-EEEecCCcCcCh-hhhHHH
Confidence 56899998753211100001 12466777776664 33444444445554442 2344 477787421111 112345
Q ss_pred HHHHHhcCCCCcEEEccCCCHHHHHHHHhh
Q 016925 326 KDKSIELKVDGNVEFYKNLLYRSVLTIFMH 355 (380)
Q Consensus 326 ~~la~~lgl~~~V~f~G~v~~~el~~ly~~ 355 (380)
++.++++|+ +.| |.+.-+.+++.+++.+
T Consensus 103 ~~~l~~~Gv-~~v-F~pgt~~~~iv~~l~~ 130 (134)
T TIGR01501 103 EKRFKEMGF-DRV-FAPGTPPEVVIADLKK 130 (134)
T ss_pred HHHHHHcCC-CEE-ECcCCCHHHHHHHHHH
Confidence 666788896 344 5555567787777654
No 199
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=38.99 E-value=98 Score=24.35 Aligned_cols=56 Identities=11% Similarity=-0.067 Sum_probs=38.8
Q ss_pred EEEEcCCCCCCCHHHHHHHHHHHHhcCCCCcEEEccCCCHHHHHHHHh--hccEEEeechhhH
Q 016925 307 LQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRSVLTIFM--HLFVFTMKWQLVY 367 (380)
Q Consensus 307 LvIvG~g~~~~~~~~~~~L~~la~~lgl~~~V~f~G~v~~~el~~ly~--~a~vf~~~~~~~~ 367 (380)
|++-|.|- +++=..+.+++.+++.|++-.|.-.+ -.++.+... .+|+++...|..|
T Consensus 5 LlvCg~G~--STSlla~k~k~~~~e~gi~~~i~a~~---~~e~~~~~~~~~~DvIll~PQi~~ 62 (104)
T PRK09590 5 LIICAAGM--SSSMMAKKTTEYLKEQGKDIEVDAIT---ATEGEKAIAAAEYDLYLVSPQTKM 62 (104)
T ss_pred EEECCCch--HHHHHHHHHHHHHHHCCCceEEEEec---HHHHHHhhccCCCCEEEEChHHHH
Confidence 45555553 23345679999999999985555444 456777654 5899999888874
No 200
>PRK09653 eutD phosphotransacetylase; Reviewed
Probab=37.94 E-value=2.3e+02 Score=27.13 Aligned_cols=45 Identities=20% Similarity=0.231 Sum_probs=32.0
Q ss_pred hHHHHHHHHHHHHHccCCCCCCeEEEEcCCCCCCCHHHHHHHHHHHHhcCCC-CcEEEcc
Q 016925 284 HPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVD-GNVEFYK 342 (380)
Q Consensus 284 ~d~li~A~~~l~~~~~~~~~~~~LvIvG~g~~~~~~~~~~~L~~la~~lgl~-~~V~f~G 342 (380)
=+..++|...+.++ ...+.+++|+ .+.+++.++++|++ +++.+..
T Consensus 25 d~~vl~Aa~~a~~e-----g~~~piLvG~---------~~~I~~~~~~~g~~~~~~eII~ 70 (324)
T PRK09653 25 DERVLKAAKRLQKE-----GLVEPILLGN---------PEEIRAKAKELGLDLDGVEIID 70 (324)
T ss_pred CHHHHHHHHHHHHC-----CCceEEEECC---------HHHHHHHHHHcCCCcCCCEEEC
Confidence 45678888887664 5688999996 26788888887763 3556554
No 201
>KOG3339 consensus Predicted glycosyltransferase [General function prediction only]
Probab=37.74 E-value=2.9e+02 Score=24.39 Aligned_cols=39 Identities=15% Similarity=0.228 Sum_probs=22.9
Q ss_pred HhHhhhcCCCCc----EEEEECCCCCCCCChhHHHHHHHHHHHHhCC
Q 016925 24 SHVHNARRNRTT----SVAFFHPNTNDGGGGERVLWCAVKAIQEESP 66 (380)
Q Consensus 24 ~~~~~~~~~~~~----~I~~~~p~~~~~GG~ervl~~la~~L~~~g~ 66 (380)
-|+...-.+.|+ ++.++-- .||---=.+++.++|++...
T Consensus 24 ~~~~~~~k~~Pk~~s~~~lVvlG----SGGHT~EMlrLl~~l~~~y~ 66 (211)
T KOG3339|consen 24 RHTQRSTKKDPKDKSLSTLVVLG----SGGHTGEMLRLLEALQDLYS 66 (211)
T ss_pred HHHHhccCCCCcCCcceEEEEEc----CCCcHHHHHHHHHHHHhhcC
Confidence 344333344444 6776654 34555556788888877643
No 202
>TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein. This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired.
Probab=36.88 E-value=1.2e+02 Score=27.39 Aligned_cols=72 Identities=13% Similarity=0.085 Sum_probs=42.4
Q ss_pred ecCCCccC-hHHHHHHHHHHHHHccCCCCCCeEEEEcCCCCCCCHHHHHHHHHHHHhcCCCCcEEEccCCCHHHHHHHHh
Q 016925 276 AQFRPEKA-HPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRSVLTIFM 354 (380)
Q Consensus 276 GRl~p~K~-~d~li~A~~~l~~~~~~~~~~~~LvIvG~g~~~~~~~~~~~L~~la~~lgl~~~V~f~G~v~~~el~~ly~ 354 (380)
--++|.|- .+...+.++.+.+ .....+++|+... -..+-.+++-+.+++..++ -|.|.|+.+ .+-.
T Consensus 4 ~liDPdK~~~~~~~~~~~~~~~------~gtdai~vGGS~~-vt~~~~~~~v~~ik~~~lP-vilfp~~~~-----~i~~ 70 (223)
T TIGR01768 4 TLIDPDKTNPSEADEIAKAAAE------SGTDAILIGGSQG-VTYEKTDTLIEALRRYGLP-IILFPSNPT-----NVSR 70 (223)
T ss_pred eeECCCCCCccccHHHHHHHHh------cCCCEEEEcCCCc-ccHHHHHHHHHHHhccCCC-EEEeCCCcc-----ccCc
Confidence 34677774 2233344555544 3567788886532 2334456666777777765 455888654 4456
Q ss_pred hccEEE
Q 016925 355 HLFVFT 360 (380)
Q Consensus 355 ~a~vf~ 360 (380)
.||++.
T Consensus 71 ~aDa~l 76 (223)
T TIGR01768 71 DADALF 76 (223)
T ss_pred CCCEEE
Confidence 688844
No 203
>COG0796 MurI Glutamate racemase [Cell envelope biogenesis, outer membrane]
Probab=36.11 E-value=2.9e+02 Score=25.77 Aligned_cols=21 Identities=24% Similarity=0.238 Sum_probs=14.8
Q ss_pred cEEEeechhhHHHHHHHHHhh
Q 016925 357 FVFTMKWQLVYDEFLKLYLQK 377 (380)
Q Consensus 357 ~vf~~~~~~~~~~~~~~~~~~ 377 (380)
..|+..-.+.|-+.++.++..
T Consensus 237 ~f~~tg~~~~~~~~~~~~l~~ 257 (269)
T COG0796 237 RFFTTGDPDEFEQLLKRWLGL 257 (269)
T ss_pred EEEEcCCcHHHHHHHHHHhcc
Confidence 456677777787777777654
No 204
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=35.82 E-value=1.6e+02 Score=26.67 Aligned_cols=72 Identities=13% Similarity=0.077 Sum_probs=54.6
Q ss_pred ChHHHHHHHHHHHHHccCCCCCC-eEEEEcCCCCCCCHHHHHHHHHHHHhcCCCCcEEEccCCCHHHHHHHHhhccE-EE
Q 016925 283 AHPLQLEAFSVALRKLDADLPRP-RLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRSVLTIFMHLFV-FT 360 (380)
Q Consensus 283 ~~d~li~A~~~l~~~~~~~~~~~-~LvIvG~g~~~~~~~~~~~L~~la~~lgl~~~V~f~G~v~~~el~~ly~~a~v-f~ 360 (380)
+.+..+++|+... +++ .+..= . .+...++-++++++|+..-|.|-+.-|-+.+..++...|+ .+
T Consensus 72 ~p~~~i~~fa~ag-------ad~It~H~E-~------~~~~~r~i~~Ik~~G~kaGv~lnP~Tp~~~i~~~l~~vD~Vll 137 (220)
T COG0036 72 NPDRYIEAFAKAG-------ADIITFHAE-A------TEHIHRTIQLIKELGVKAGLVLNPATPLEALEPVLDDVDLVLL 137 (220)
T ss_pred CHHHHHHHHHHhC-------CCEEEEEec-c------CcCHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhhCCEEEE
Confidence 4677888888652 222 22222 1 1235678899999999999999999999999999999999 66
Q ss_pred eechhhHH
Q 016925 361 MKWQLVYD 368 (380)
Q Consensus 361 ~~~~~~~~ 368 (380)
|+..-.||
T Consensus 138 MsVnPGfg 145 (220)
T COG0036 138 MSVNPGFG 145 (220)
T ss_pred EeECCCCc
Confidence 89988887
No 205
>COG3114 CcmD Heme exporter protein D [Intracellular trafficking and secretion]
Probab=35.82 E-value=60 Score=23.08 Aligned_cols=30 Identities=23% Similarity=0.506 Sum_probs=23.3
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHhHhhhc
Q 016925 1 MAPYGILIWAVITAVLASILILASHVHNAR 30 (380)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 30 (380)
|.-||...|.....-+.++.+|.-|.--.|
T Consensus 12 MGgyafyVWlA~~~tll~l~~l~v~sv~qr 41 (67)
T COG3114 12 MGGYAFYVWLAVGMTLLPLAVLVVHSVLQR 41 (67)
T ss_pred ccCchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677999999888888888888877754443
No 206
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=35.57 E-value=1.5e+02 Score=28.26 Aligned_cols=68 Identities=10% Similarity=0.009 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHHccCCCCCCeEEEEcCCCCCCCHHHHHHHHHHHHhcCCCCcE-EEccCCCHHHHHHHHhhc
Q 016925 285 PLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNV-EFYKNLLYRSVLTIFMHL 356 (380)
Q Consensus 285 d~li~A~~~l~~~~~~~~~~~~LvIvG~g~~~~~~~~~~~L~~la~~lgl~~~V-~f~G~v~~~el~~ly~~a 356 (380)
+.+-+..+.++.+. ..|..-.+.+|+. +.+..|.+..++.++++|+.-.+ .|...++.+|+.+.+...
T Consensus 18 ~~lk~~i~~l~~~g--~~P~LaiI~vg~d--~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~t~~~l~~~I~~l 86 (301)
T PRK14194 18 AQVREDVRTLKAAG--IEPALAVILVGND--PASQVYVRNKILRAEEAGIRSLEHRLPADTSQARLLALIAEL 86 (301)
T ss_pred HHHHHHHHHHHhCC--CCCeEEEEEeCCC--hhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 34444455554321 2366666777764 45678999999999999999755 566678888888887665
No 207
>TIGR01527 arch_NMN_Atrans nicotinamide-nucleotide adenylyltransferase. In some archaeal species, a lower-scoring paralog, uncharacterized with respect to activity, is also present. These score between trusted and noise cutoffs.
Probab=35.50 E-value=2.8e+02 Score=23.69 Aligned_cols=22 Identities=14% Similarity=0.339 Sum_probs=17.2
Q ss_pred EEEecCCC-ccChHHHHHHHHHH
Q 016925 273 ISVAQFRP-EKAHPLQLEAFSVA 294 (380)
Q Consensus 273 l~VGRl~p-~K~~d~li~A~~~l 294 (380)
++.||++| .+||-.+++.....
T Consensus 3 l~~G~FdP~H~GHl~ii~~a~~~ 25 (165)
T TIGR01527 3 FYIGRFQPFHLGHLEVIKKIAEE 25 (165)
T ss_pred EEEeccCCCCHHHHHHHHHHHHH
Confidence 67899996 88888888776654
No 208
>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=35.50 E-value=1.8e+02 Score=27.50 Aligned_cols=52 Identities=10% Similarity=0.197 Sum_probs=40.8
Q ss_pred CCCeEEEEcCCCCCCCHHHHHHHHHHHHhcCCCCcE-EEccCCCHHHHHHHHhhc
Q 016925 303 PRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNV-EFYKNLLYRSVLTIFMHL 356 (380)
Q Consensus 303 ~~~~LvIvG~g~~~~~~~~~~~L~~la~~lgl~~~V-~f~G~v~~~el~~ly~~a 356 (380)
|..-.+.+|+. +.+..|.+..++.++++|+.-.. .|...++++|+.+.+.+.
T Consensus 33 P~LaiI~vg~d--~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~~l~~~I~~L 85 (288)
T PRK14171 33 PKLAIVLVGDN--PASIIYVKNKIKNAHKIGIDTLLVNLSTTIHTNDLISKINEL 85 (288)
T ss_pred CeEEEEEeCCC--ccHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 65666777764 46778999999999999998654 567788999998888763
No 209
>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=35.48 E-value=1.3e+02 Score=28.23 Aligned_cols=53 Identities=9% Similarity=0.072 Sum_probs=40.6
Q ss_pred CCCCeEEEEcCCCCCCCHHHHHHHHHHHHhcCCCCcE-EEccCCCHHHHHHHHhhc
Q 016925 302 LPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNV-EFYKNLLYRSVLTIFMHL 356 (380)
Q Consensus 302 ~~~~~LvIvG~g~~~~~~~~~~~L~~la~~lgl~~~V-~f~G~v~~~el~~ly~~a 356 (380)
.|..-.+.+|+. +.+..|.+..++.++++|+.-.+ .|...++++++.+.+...
T Consensus 30 ~P~LaiI~vg~d--~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~t~~~l~~~I~~l 83 (282)
T PRK14182 30 QTGLTVVRVGDD--PASAIYVRGKRKDCEEVGITSVEHHLPATTTQAELLALIARL 83 (282)
T ss_pred CCeEEEEEeCCC--HHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 366666777764 46778999999999999998654 566678988888887644
No 210
>TIGR01862 N2-ase-Ialpha nitrogenase component I, alpha chain. This model represents the alpha chain of all three varieties (Mo-Fe, V-Fe, and Fe-Fe) of component I of nitrogenase.
Probab=34.80 E-value=3e+02 Score=27.63 Aligned_cols=75 Identities=9% Similarity=0.014 Sum_probs=48.3
Q ss_pred ccChHHHHHHHH-HHHHHcc-CCCCCCeEEEEcCCCCCCCHHHHHHHHHHHHhcCCCCcEEEccCCCHHHHHHHHhhccE
Q 016925 281 EKAHPLQLEAFS-VALRKLD-ADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRSVLTIFMHLFV 358 (380)
Q Consensus 281 ~K~~d~li~A~~-~l~~~~~-~~~~~~~LvIvG~g~~~~~~~~~~~L~~la~~lgl~~~V~f~G~v~~~el~~ly~~a~v 358 (380)
.+|++...+|+. .+..... +..++-.+-|+|+..... -.++|+++.+++|++-+..|.|.-+-+|+.. +.+|.+
T Consensus 166 ~~G~~~a~~al~~~l~~~~~~~~~~~~~VNiig~~~~~~---d~~el~~lL~~~Gl~v~~~~~~~~t~eei~~-~~~A~l 241 (443)
T TIGR01862 166 SKGHHIANIAVINDKVGTREKEITTEYDVNIIGEYNIGG---DAWVMRIYLEEMGIQVVATFTGDGTYDEIRL-MHKAKL 241 (443)
T ss_pred chHHHHHHHHHHHHHhCCCCcccCCCCeEEEEccCcCcc---cHHHHHHHHHHcCCeEEEEECCCCCHHHHHh-cccCCE
Confidence 367888777754 3332110 011245688888643222 2478999999999998888999887778765 455555
Q ss_pred E
Q 016925 359 F 359 (380)
Q Consensus 359 f 359 (380)
=
T Consensus 242 n 242 (443)
T TIGR01862 242 N 242 (443)
T ss_pred E
Confidence 3
No 211
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=34.41 E-value=1.7e+02 Score=27.56 Aligned_cols=65 Identities=11% Similarity=0.072 Sum_probs=46.5
Q ss_pred CCCeEEEEcCCCCCCCHHHHHHHHHHHHhcCCCCcE-EEccCCCHHHHHHHHhhc--c-----EEEe-echhhHHH
Q 016925 303 PRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNV-EFYKNLLYRSVLTIFMHL--F-----VFTM-KWQLVYDE 369 (380)
Q Consensus 303 ~~~~LvIvG~g~~~~~~~~~~~L~~la~~lgl~~~V-~f~G~v~~~el~~ly~~a--~-----vf~~-~~~~~~~~ 369 (380)
|..-.+.+|+. +.+..|.+..++.++++|+.-.. .|...++.+|+.+.+... | ++++ |-..++++
T Consensus 33 p~Laii~vg~d--~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~~l~~~I~~lN~d~~V~GIlvq~Plp~~i~~ 106 (285)
T PRK14189 33 PGLAVILVGDN--PASQVYVRNKVKACEDNGFHSLKDRYPADLSEAELLARIDELNRDPKIHGILVQLPLPKHIDS 106 (285)
T ss_pred CeEEEEEeCCC--chHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHcCCCCCCeEEEeCCCCCCCCH
Confidence 65556777764 46778999999999999998544 567788899988888754 3 3443 54456554
No 212
>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=34.38 E-value=1.8e+02 Score=27.47 Aligned_cols=65 Identities=8% Similarity=0.073 Sum_probs=46.9
Q ss_pred CCCeEEEEcCCCCCCCHHHHHHHHHHHHhcCCCCcE-EEccCCCHHHHHHHHhhc----c---EEEe-echhhHHH
Q 016925 303 PRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNV-EFYKNLLYRSVLTIFMHL----F---VFTM-KWQLVYDE 369 (380)
Q Consensus 303 ~~~~LvIvG~g~~~~~~~~~~~L~~la~~lgl~~~V-~f~G~v~~~el~~ly~~a----~---vf~~-~~~~~~~~ 369 (380)
|..-.+.+|+. +.+..|.+..++.++++|+...+ .|...++++|+.+.+.+. + ++++ |-.+++++
T Consensus 32 P~Laii~vg~d--~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~~l~~~I~~lN~d~~V~GIlvqlPLP~~id~ 105 (286)
T PRK14184 32 PGLAVILVGED--PASQVYVRNKERACEDAGIVSEAFRLPADTTQEELEDLIAELNARPDIDGILLQLPLPKGLDS 105 (286)
T ss_pred CEEEEEEeCCC--hhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCcCceEEEecCCCCCCCH
Confidence 65556777764 46778999999999999999655 466678999998888755 2 3443 55566655
No 213
>PLN02527 aspartate carbamoyltransferase
Probab=34.06 E-value=4.2e+02 Score=25.19 Aligned_cols=122 Identities=12% Similarity=0.007 Sum_probs=66.7
Q ss_pred HhcCCCEEEE--cCHHHHHHHHHHhCCCCceEEecCCCCCCCCCCC----------CCCCCCCCCEEEEEecCCCccChH
Q 016925 218 VGSCADLAMV--NSSWTQSHIEKLWGIPDRIKRVYPPCDTSGLQVL----------PLERSTEYPAIISVAQFRPEKAHP 285 (380)
Q Consensus 218 ~~~~ad~ii~--~S~~~~~~i~~~~~~~~k~~vi~~gvd~~~~~~~----------~~~~~~~~~~il~VGRl~p~K~~d 285 (380)
+.+.+|.|+. .++.+.+++.+... +-|| |+-+-....|. ......++..|.+||-....+=..
T Consensus 93 ls~y~D~iviR~~~~~~~~~~a~~~~----vPVI-Na~~g~~~HPtQ~LaDl~Ti~e~~g~l~g~kva~vGD~~~~rv~~ 167 (306)
T PLN02527 93 VEGYSDIIVLRHFESGAARRAAATAE----IPVI-NAGDGPGQHPTQALLDVYTIQREIGRLDGIKVGLVGDLANGRTVR 167 (306)
T ss_pred HHHhCcEEEEECCChhHHHHHHHhCC----CCEE-ECCCCCCCChHHHHHHHHHHHHHhCCcCCCEEEEECCCCCChhHH
Confidence 3456898885 55666666665432 2244 55442233331 000112457899999654322233
Q ss_pred HHHHHHHHHHHHccCCCCCCeEEEEcCCCCCCCHHHHHHHHHHHHhcCCCCcEEEccCCCHHHHHHHHhhccEEEeec
Q 016925 286 LQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRSVLTIFMHLFVFTMKW 363 (380)
Q Consensus 286 ~li~A~~~l~~~~~~~~~~~~LvIvG~g~~~~~~~~~~~L~~la~~lgl~~~V~f~G~v~~~el~~ly~~a~vf~~~~ 363 (380)
-++.+++.+ .+..+.+++....... +++.+.+++.|. .+.+. +++.+.++.||+..+.|
T Consensus 168 Sl~~~~~~~--------~g~~v~~~~P~~~~~~----~~~~~~~~~~g~--~~~~~-----~d~~~a~~~aDvvyt~~ 226 (306)
T PLN02527 168 SLAYLLAKY--------EDVKIYFVAPDVVKMK----DDIKDYLTSKGV--EWEES-----SDLMEVASKCDVLYQTR 226 (306)
T ss_pred HHHHHHHhc--------CCCEEEEECCCccCCC----HHHHHHHHHcCC--EEEEE-----cCHHHHhCCCCEEEECC
Confidence 344444432 5789999995422112 344555555443 34443 25779999999977655
No 214
>PF14639 YqgF: Holliday-junction resolvase-like of SPT6 ; PDB: 3PSI_A 3PSF_A.
Probab=34.03 E-value=81 Score=26.62 Aligned_cols=78 Identities=14% Similarity=0.144 Sum_probs=42.6
Q ss_pred ecCCCccChHHHHHHHHHHHHHccCCCCCCeEEEEcCCCCCCCHHHHHHHHHHHHhcCCCCcEEEcc--CCCHHHHHHHH
Q 016925 276 AQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYK--NLLYRSVLTIF 353 (380)
Q Consensus 276 GRl~p~K~~d~li~A~~~l~~~~~~~~~~~~LvIvG~g~~~~~~~~~~~L~~la~~lgl~~~V~f~G--~v~~~el~~ly 353 (380)
.+...+..-+...+.+..+.+++ .+.++.+|+.. .+.....+.+++.++++..++...-+. .+ +++++.+|
T Consensus 40 ~~~~~~~~~~~~~~~l~~~i~~~-----kP~vI~v~g~~-~~s~~l~~~v~~~v~~~~~~~~~~~i~V~~v-~~~~A~lY 112 (150)
T PF14639_consen 40 YNERDRERKEEDMERLKKFIEKH-----KPDVIAVGGNS-RESRKLYDDVRDIVEELDEDEQMPPIPVVIV-DDEVARLY 112 (150)
T ss_dssp S-TT-SS-SHHHHHHHHHHHHHH-------SEEEE--SS-THHHHHHHHHHHHHHHTTB-TTS-B--EEE----TTHHHH
T ss_pred CCccchHHHHHHHHHHHHHHHHc-----CCeEEEEcCCC-hhHHHHHHHHHHHHHHhhhcccCCCceEEEE-CcHHHHHH
Confidence 44455556667777777777775 44666665432 344556678889898876333222111 22 46899999
Q ss_pred hhccEEE
Q 016925 354 MHLFVFT 360 (380)
Q Consensus 354 ~~a~vf~ 360 (380)
+++..-.
T Consensus 113 ~~S~rA~ 119 (150)
T PF14639_consen 113 SNSKRAA 119 (150)
T ss_dssp HTSHHHH
T ss_pred hcCHHHH
Confidence 9998643
No 215
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=34.03 E-value=2.6e+02 Score=25.91 Aligned_cols=78 Identities=14% Similarity=-0.052 Sum_probs=41.0
Q ss_pred CccChHHHHHHHHHHHHHccCCCCCCeEEEEcCCCCCCC-HHHHHHHHHHHHhcCCCCcEEEccCCCHHHHHHHHhh-cc
Q 016925 280 PEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSD-EERLQSLKDKSIELKVDGNVEFYKNLLYRSVLTIFMH-LF 357 (380)
Q Consensus 280 p~K~~d~li~A~~~l~~~~~~~~~~~~LvIvG~g~~~~~-~~~~~~L~~la~~lgl~~~V~f~G~v~~~el~~ly~~-a~ 357 (380)
+.+..+.+++.+..+.+.. ...+.++..|....... .++.+++.+.+++.++.-.+ -.|.++++.+..+-.. ++
T Consensus 60 ~~~~~eei~~~~~~~~~~g---~~~~~l~~~g~~~~~~~~~~~~~~i~~~~~~~~i~~~~-~~g~~~~e~l~~Lk~aG~~ 135 (296)
T TIGR00433 60 RLKKVDEVLEEARKAKAAG---ATRFCLVASGRGPKDREFMEYVEAMVQIVEEMGLKTCA-TLGLLDPEQAKRLKDAGLD 135 (296)
T ss_pred cCCCHHHHHHHHHHHHHCC---CCEEEEEEecCCCChHHHHHHHHHHHHHHHhCCCeEEe-cCCCCCHHHHHHHHHcCCC
Confidence 3455688888887765431 12222333344322111 34667777777777775322 2477776665544433 34
Q ss_pred EEEe
Q 016925 358 VFTM 361 (380)
Q Consensus 358 vf~~ 361 (380)
.+..
T Consensus 136 ~v~i 139 (296)
T TIGR00433 136 YYNH 139 (296)
T ss_pred EEEE
Confidence 4433
No 216
>COG1440 CelA Phosphotransferase system cellobiose-specific component IIB [Carbohydrate transport and metabolism]
Probab=34.01 E-value=1.4e+02 Score=23.39 Aligned_cols=58 Identities=12% Similarity=0.011 Sum_probs=42.0
Q ss_pred CCeEEEEcCCCCCCCHHHHHHHHHHHHhcCCCCcEEEccCCCHHHHHHHHhhccEEEeechhhH
Q 016925 304 RPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRSVLTIFMHLFVFTMKWQLVY 367 (380)
Q Consensus 304 ~~~LvIvG~g~~~~~~~~~~~L~~la~~lgl~~~V~f~G~v~~~el~~ly~~a~vf~~~~~~~~ 367 (380)
++-|++.++-+ .+=....+++.|++.|.+-.|. -.+..++.+.+.++|+.+...|.-|
T Consensus 3 ~IlLvC~aGmS---TSlLV~Km~~aA~~kg~~~~I~---A~s~~e~~~~~~~~DvvLlGPQv~y 60 (102)
T COG1440 3 KILLVCAAGMS---TSLLVTKMKKAAESKGKDVTIE---AYSETELSEYIDNADVVLLGPQVRY 60 (102)
T ss_pred eEEEEecCCCc---HHHHHHHHHHHHHhCCCceEEE---EechhHHHHhhhcCCEEEEChHHHH
Confidence 34566666543 2334578999999988875555 3457799999999999999888755
No 217
>PRK14986 glycogen phosphorylase; Provisional
Probab=33.73 E-value=1.5e+02 Score=32.25 Aligned_cols=89 Identities=11% Similarity=0.003 Sum_probs=56.6
Q ss_pred CCCEEEEEecCCCccChHH-HHHHHHHHHHHccCCCC-----CCeEEEEcCCCCCCCHHHHHHHHHHH----H----hcC
Q 016925 268 EYPAIISVAQFRPEKAHPL-QLEAFSVALRKLDADLP-----RPRLQFVGSCRNKSDEERLQSLKDKS----I----ELK 333 (380)
Q Consensus 268 ~~~~il~VGRl~p~K~~d~-li~A~~~l~~~~~~~~~-----~~~LvIvG~g~~~~~~~~~~~L~~la----~----~lg 333 (380)
+.-+++++=|+...|+..+ ++..+.++.+-. ..| ...++++|..-.. + ....++-+++ + +-.
T Consensus 542 ~sLfd~qakR~heYKRq~LNil~~i~ry~~i~--~~p~~~~~P~~~IFaGKAaP~-y-~~aK~iIk~I~~va~~in~Dp~ 617 (815)
T PRK14986 542 KALFDVQIKRIHEYKRQLMNVLHVITRYNRIK--ADPDAKWVPRVNIFAGKAASA-Y-YMAKHIIHLINDVAKVINNDPQ 617 (815)
T ss_pred ccceeeeehhhhhhhhhhHHHhhhHHHHHHHH--hCCCcCCCCeEEEEeecCCCC-c-HHHHHHHHHHHHHHHHhccChh
Confidence 3457888889999999999 777765553221 112 3567888865221 1 1223333333 3 234
Q ss_pred CCC--cEEEccCCCHHHHHHHHhhccEEE
Q 016925 334 VDG--NVEFYKNLLYRSVLTIFMHLFVFT 360 (380)
Q Consensus 334 l~~--~V~f~G~v~~~el~~ly~~a~vf~ 360 (380)
+.+ +|.|+.+-+-+--+.++..||+-.
T Consensus 618 v~~~lkVVFlenY~vslAe~lipg~Dv~e 646 (815)
T PRK14986 618 IGDKLKVVFIPNYSVSLAQLIIPAADLSE 646 (815)
T ss_pred hcCceeEEEeCCCCHHHHHHhhhhhhhhh
Confidence 555 899999877667778999999844
No 218
>PF13788 DUF4180: Domain of unknown function (DUF4180)
Probab=33.67 E-value=1.7e+02 Score=23.50 Aligned_cols=39 Identities=23% Similarity=0.203 Sum_probs=31.1
Q ss_pred CCCeEEEEcCCCCCCCHHHHHHHHHHHHhcCCCCcEEEccCC
Q 016925 303 PRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNL 344 (380)
Q Consensus 303 ~~~~LvIvG~g~~~~~~~~~~~L~~la~~lgl~~~V~f~G~v 344 (380)
-..++.|+|+-+.. ..-+.|++.+.+-+-..+|.|....
T Consensus 68 Y~iklAivGD~s~~---~~S~~l~dfi~EsN~G~~~~F~~~~ 106 (113)
T PF13788_consen 68 YRIKLAIVGDFSAY---ATSKSLRDFIYESNRGNHFFFVPDE 106 (113)
T ss_pred hceeEEEEEccccc---ccchhHHHHHHHhcCCCeEEEECCH
Confidence 57899999987532 1236899999999999999999863
No 219
>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=33.66 E-value=1.6e+02 Score=27.83 Aligned_cols=52 Identities=10% Similarity=0.126 Sum_probs=39.9
Q ss_pred CCCeEEEEcCCCCCCCHHHHHHHHHHHHhcCCCCcE-EEccCCCHHHHHHHHhhc
Q 016925 303 PRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNV-EFYKNLLYRSVLTIFMHL 356 (380)
Q Consensus 303 ~~~~LvIvG~g~~~~~~~~~~~L~~la~~lgl~~~V-~f~G~v~~~el~~ly~~a 356 (380)
|..-.+.+|+. +.+..|.+..++.++++|+.-.+ .|...++.+|+.+.+...
T Consensus 33 P~LaiI~vg~d--~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~t~~el~~~I~~l 85 (284)
T PRK14193 33 PGLGTVLVGDD--PGSQAYVRGKHRDCAEVGITSIRRDLPADATQEELNAVIDEL 85 (284)
T ss_pred ceEEEEEeCCC--HHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 55556677764 45678999999999999998554 566678888888887765
No 220
>cd01971 Nitrogenase_VnfN_like Nitrogenase_vnfN_like: VnfN subunit of the VnfEN complex-like. This group in addition to VnfN contains a subset of the beta subunit of the nitrogenase MoFe protein and NifN-like proteins. The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of MoFe protein of the molybdenum(Mo)-nitrogenase. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to NifEN where it is further processed to FeMoco. VnfEN may similarly be a scaffolding protien for the iron-vanadium cofactor (FeVco) of the vanadium-dependent (V)-nitrogenase. NifE and NifN are essential for the Mo-nitrogenase, VnfE and VnfN are not essential for the V-nitrogenase. NifE and NifN can substitute when the vnfEN genes are inactivated.
Probab=33.63 E-value=2.3e+02 Score=28.19 Aligned_cols=91 Identities=12% Similarity=0.123 Sum_probs=53.8
Q ss_pred CccChHHHHHHHHH-HHHHccCCCCCCeEEEEcCCC--CCCCHHHHHHHHHHHHhcCCCCcEEEccCCCHHHHHHHHhhc
Q 016925 280 PEKAHPLQLEAFSV-ALRKLDADLPRPRLQFVGSCR--NKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRSVLTIFMHL 356 (380)
Q Consensus 280 p~K~~d~li~A~~~-l~~~~~~~~~~~~LvIvG~g~--~~~~~~~~~~L~~la~~lgl~~~V~f~G~v~~~el~~ly~~a 356 (380)
...|++.+++|+-. +.++. +..++-.+-|+|.-. +.....-.++|+++.+++|++-++.|.+.-+-+|+.. +.+|
T Consensus 131 ~~~G~~~a~~al~~~~~~~~-~~~~~~~VNiiG~~~~~~~~~~~d~~elk~lL~~~Gl~v~~~~~~~~~~~ei~~-~~~A 208 (427)
T cd01971 131 NYAGHEIVLKAIIDQYVGQS-EEKEPGLVNLWGPVPYQDPFWRGDLEEIKRVLEGIGLKVNILFGPESNGEELRS-IPKA 208 (427)
T ss_pred cccHHHHHHHHHHHHhccCC-CCCCCCeEEEEeccCCccccccccHHHHHHHHHHCCCeEEEEECCCCCHHHHHh-cccC
Confidence 34788888888764 32211 012344577888521 1100122578999999999999899987766666655 4455
Q ss_pred cE-EEe-ec-hhhHHHHHH
Q 016925 357 FV-FTM-KW-QLVYDEFLK 372 (380)
Q Consensus 357 ~v-f~~-~~-~~~~~~~~~ 372 (380)
.+ .++ ++ ....+++|+
T Consensus 209 ~~niv~~~~~g~~~a~~L~ 227 (427)
T cd01971 209 QFNLVLSPWVGLEFAQHLE 227 (427)
T ss_pred cEEEEEcHhhHHHHHHHHH
Confidence 54 333 33 345566554
No 221
>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=33.45 E-value=1.5e+02 Score=27.89 Aligned_cols=52 Identities=15% Similarity=0.284 Sum_probs=39.9
Q ss_pred CCCeEEEEcCCCCCCCHHHHHHHHHHHHhcCCCCcE-EEccCCCHHHHHHHHhhc
Q 016925 303 PRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNV-EFYKNLLYRSVLTIFMHL 356 (380)
Q Consensus 303 ~~~~LvIvG~g~~~~~~~~~~~L~~la~~lgl~~~V-~f~G~v~~~el~~ly~~a 356 (380)
|..-.+.+|+. +.+..|.+..++.++++|+.-.. .|...++++|+.+.+.+.
T Consensus 32 P~Laii~vg~d--~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~l 84 (284)
T PRK14170 32 PGLAVVLVGDN--QASRTYVRNKQKRTEEAGMKSVLIELPENVTEEKLLSVVEEL 84 (284)
T ss_pred CeEEEEEeCCC--HHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 65566677764 46778999999999999998644 577788888888887754
No 222
>TIGR01284 alt_nitrog_alph nitrogenase alpha chain. This model represents the alpha chains of various forms of the nitrogen-fixing enzyme nitrogenase: vanadium-iron, iron-iron, and molybdenum-iron. Most examples of NifD, the molybdenum-iron type nitrogenase alpha chain, are excluded from this model and described instead by equivalog model TIGR01282. It appears by phylogenetic and UPGMA trees that this model represents a distinct clade of NifD homologs, in which arose several molybdenum-independent forms.
Probab=33.26 E-value=2.9e+02 Score=27.92 Aligned_cols=93 Identities=11% Similarity=0.068 Sum_probs=54.1
Q ss_pred CccChHHHHHHHH-HHHHHcc-CCCCCCeEEEEcCCCCCCCHHHHHHHHHHHHhcCCCCcEEEccCCCHHHHHHHHhhcc
Q 016925 280 PEKAHPLQLEAFS-VALRKLD-ADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRSVLTIFMHLF 357 (380)
Q Consensus 280 p~K~~d~li~A~~-~l~~~~~-~~~~~~~LvIvG~g~~~~~~~~~~~L~~la~~lgl~~~V~f~G~v~~~el~~ly~~a~ 357 (380)
..+|++...+|+- .+..... +..++-.+-|+|+-... .-.++++++.+++|++-...|.|.-+-+|+.. +.+|+
T Consensus 173 ~~~G~~~a~~al~~~l~~~~~~~~~~~~~VNiiG~~~~~---gd~~el~~lL~~~Gl~v~~~~~g~~s~~ei~~-~~~A~ 248 (457)
T TIGR01284 173 QSKGHHVANITWINDKVGTAEPEITTEYDVNLIGEYNIQ---GDLWVLKKYFERMGIQVLSTFTGNGCYDELRW-MHRAK 248 (457)
T ss_pred cchHHHHHHHHHHHHHhCccCcccCCCCeEEEEccCCch---hhHHHHHHHHHHcCCeEEEEECCCCCHHHHHh-ccccC
Confidence 3467877777643 3332210 11134567788864321 22578999999999998789999887777765 44555
Q ss_pred EEEeechhhHHHHHHHHHhh
Q 016925 358 VFTMKWQLVYDEFLKLYLQK 377 (380)
Q Consensus 358 vf~~~~~~~~~~~~~~~~~~ 377 (380)
+=+...+ .++..+--||++
T Consensus 249 lniv~~~-~~~~~~A~~Le~ 267 (457)
T TIGR01284 249 LNVVRCA-RSANYIANELEE 267 (457)
T ss_pred EEEEECh-HHHHHHHHHHHH
Confidence 5222221 244444445543
No 223
>PRK05331 putative phosphate acyltransferase; Provisional
Probab=33.19 E-value=4.5e+02 Score=25.33 Aligned_cols=87 Identities=9% Similarity=0.017 Sum_probs=57.0
Q ss_pred EecCCCccChHHHHHHHHHHHHHccCCCCCCeEEEEcCCCCCCCHHHHHHHHHHHHhcCCC-CcEEEccCCC--------
Q 016925 275 VAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVD-GNVEFYKNLL-------- 345 (380)
Q Consensus 275 VGRl~p~K~~d~li~A~~~l~~~~~~~~~~~~LvIvG~g~~~~~~~~~~~L~~la~~lgl~-~~V~f~G~v~-------- 345 (380)
|=-+....+.+.+++|..+..+++ ++.+++++|+. +++++.+.++++. +++.+...-+
T Consensus 6 vDamGgD~~p~~vl~aa~~a~~~~----~~~~~iLvG~~---------~~I~~~l~~~~~~~~~~~Iv~~~~~i~~~e~p 72 (334)
T PRK05331 6 IDAMGGDFGPEVVVPGALQALKEH----PDLEIILVGDE---------EKIKPLLAKKPDLKERIEIVHASEVIGMDDKP 72 (334)
T ss_pred EEcCCCccCHHHHHHHHHHHHhcC----CCeEEEEEeCH---------HHHHHHHHhcCCCcCCcEEEeCCCcccccccH
Confidence 334556788899999998887753 67999999962 5788888887753 3455553211
Q ss_pred HHHHH-----------HHHh--hccEEEeechhhHHHHHHHHHh
Q 016925 346 YRSVL-----------TIFM--HLFVFTMKWQLVYDEFLKLYLQ 376 (380)
Q Consensus 346 ~~el~-----------~ly~--~a~vf~~~~~~~~~~~~~~~~~ 376 (380)
.+.++ .+.+ .||.++... ..|.++..-++
T Consensus 73 ~~alR~kk~ssm~~A~~lV~~G~AD~~vSgg--~Tga~l~~a~~ 114 (334)
T PRK05331 73 SQALRRKKDSSMRVALELVKEGEADACVSAG--NTGALMAAALF 114 (334)
T ss_pred HHHHHhcCCChHHHHHHHHhCCCCCEEEeCC--cHHHHHHHHHH
Confidence 12222 3444 677777653 88888874433
No 224
>PF02302 PTS_IIB: PTS system, Lactose/Cellobiose specific IIB subunit; InterPro: IPR003501 The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The lactose/cellobiose-specific family are one of four structurally and functionally distinct group IIB PTS system cytoplasmic enzymes. The fold of IIB cellobiose shows similar structure to mammalian tyrosine phosphatases. This signature is often found downstream of IPR003352 from INTERPRO.; GO: 0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system; PDB: 1TVM_A 2WY2_D 1IIB_A 2WWV_D 1H9C_A 1E2B_A 2L2Q_A 2KYR_A 3CZC_A 3NBM_A ....
Probab=33.07 E-value=1.3e+02 Score=22.25 Aligned_cols=56 Identities=20% Similarity=0.135 Sum_probs=37.5
Q ss_pred EEEEcCCCCCCCHHHH-HHHHHHHHhcCCCCcEEEccCCCHHHHHHHHhhccEEEeechhhH
Q 016925 307 LQFVGSCRNKSDEERL-QSLKDKSIELKVDGNVEFYKNLLYRSVLTIFMHLFVFTMKWQLVY 367 (380)
Q Consensus 307 LvIvG~g~~~~~~~~~-~~L~~la~~lgl~~~V~f~G~v~~~el~~ly~~a~vf~~~~~~~~ 367 (380)
|++-|.|- +..-.. +.+++.++++|++-.+.-.. . .+.......+|+++...+..|
T Consensus 3 lvvC~~Gi--~TS~~~~~~i~~~~~~~gi~~~~~~~~-~--~~~~~~~~~~D~il~~~~i~~ 59 (90)
T PF02302_consen 3 LVVCGSGI--GTSLMVANKIKKALKELGIEVEVSAGS-I--LEVEEIADDADLILLTPQIAY 59 (90)
T ss_dssp EEEESSSS--HHHHHHHHHHHHHHHHTTECEEEEEEE-T--TTHHHHHTT-SEEEEEESSGG
T ss_pred EEECCChH--HHHHHHHHHHHHHHHhccCceEEEEec-c--cccccccCCCcEEEEcCccch
Confidence 34455542 223344 79999999999876665554 2 356677788999998887776
No 225
>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=32.89 E-value=1.8e+02 Score=27.44 Aligned_cols=65 Identities=15% Similarity=0.173 Sum_probs=46.1
Q ss_pred CCCeEEEEcCCCCCCCHHHHHHHHHHHHhcCCCCcE-EEccCCCHHHHHHHHhhc--c-----EEEe-echhhHHH
Q 016925 303 PRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNV-EFYKNLLYRSVLTIFMHL--F-----VFTM-KWQLVYDE 369 (380)
Q Consensus 303 ~~~~LvIvG~g~~~~~~~~~~~L~~la~~lgl~~~V-~f~G~v~~~el~~ly~~a--~-----vf~~-~~~~~~~~ 369 (380)
|..-.+.+|+. +.+..|.+..++.++++|+.-.. .|...++.+|+.+.+.+. | ++++ |-.+++++
T Consensus 31 P~Laii~vg~d--~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvqlPLp~~i~~ 104 (282)
T PRK14169 31 PTLAVVLVGSD--PASEVYVRNKQRRAEDIGVRSLMFRLPEATTQADLLAKVAELNHDPDVDAILVQLPLPAGLDE 104 (282)
T ss_pred CeEEEEEeCCC--hhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCH
Confidence 65566777764 46778999999999999998655 466678888888888754 1 2333 55566654
No 226
>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=32.81 E-value=1.7e+02 Score=27.63 Aligned_cols=52 Identities=15% Similarity=0.270 Sum_probs=40.1
Q ss_pred CCCeEEEEcCCCCCCCHHHHHHHHHHHHhcCCCCcE-EEccCCCHHHHHHHHhhc
Q 016925 303 PRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNV-EFYKNLLYRSVLTIFMHL 356 (380)
Q Consensus 303 ~~~~LvIvG~g~~~~~~~~~~~L~~la~~lgl~~~V-~f~G~v~~~el~~ly~~a 356 (380)
|..-.+.+|+. +.+..|.+..++.++++|+.-.+ .|...++.+|+.+.+.+.
T Consensus 33 P~Laii~vg~d--~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~l 85 (284)
T PRK14190 33 PGLAVILVGDD--PASHSYVRGKKKAAEKVGIYSELYEFPADITEEELLALIDRL 85 (284)
T ss_pred CeEEEEEeCCC--HHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 55556677764 45678999999999999998655 467788888988888754
No 227
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=32.50 E-value=2.1e+02 Score=24.49 Aligned_cols=54 Identities=9% Similarity=0.066 Sum_probs=36.8
Q ss_pred CCCCeEEEEcCCCCCCCHHHHH-HHHHHHHhcCCCCcEEEccCCCHHHHHHHHhhccEEEeech
Q 016925 302 LPRPRLQFVGSCRNKSDEERLQ-SLKDKSIELKVDGNVEFYKNLLYRSVLTIFMHLFVFTMKWQ 364 (380)
Q Consensus 302 ~~~~~LvIvG~g~~~~~~~~~~-~L~~la~~lgl~~~V~f~G~v~~~el~~ly~~a~vf~~~~~ 364 (380)
..+.+.+|+|.|. ... .+-+...+.|. +|.+... ..+++.+.++.||+.+....
T Consensus 42 l~gk~vlViG~G~------~~G~~~a~~L~~~g~--~V~v~~r-~~~~l~~~l~~aDiVIsat~ 96 (168)
T cd01080 42 LAGKKVVVVGRSN------IVGKPLAALLLNRNA--TVTVCHS-KTKNLKEHTKQADIVIVAVG 96 (168)
T ss_pred CCCCEEEEECCcH------HHHHHHHHHHhhCCC--EEEEEEC-CchhHHHHHhhCCEEEEcCC
Confidence 4678999999862 112 24445555555 4777765 34689999999999887543
No 228
>cd02166 NMNAT_Archaea Nicotinamide/nicotinate mononucleotide adenylyltransferase, archaeal. This family of archaeal proteins exhibits nicotinamide-nucleotide adenylyltransferase (NMNAT) activity utilizing the salvage pathway to synthesize NAD. In some cases, the enzyme was tested and found also to have the activity of nicotinate-nucleotide adenylyltransferase an enzyme of NAD de novo biosynthesis, although with a higher Km. In some archaeal species, a number of proteins which are uncharacterized with respect to activity, are also present.
Probab=32.31 E-value=2.4e+02 Score=23.89 Aligned_cols=23 Identities=13% Similarity=0.244 Sum_probs=17.3
Q ss_pred EEEEecCCC-ccChHHHHHHHHHH
Q 016925 272 IISVAQFRP-EKAHPLQLEAFSVA 294 (380)
Q Consensus 272 il~VGRl~p-~K~~d~li~A~~~l 294 (380)
-++.|+++| .+||..+++.+...
T Consensus 2 ~v~~G~FdP~H~GHl~~i~~a~~~ 25 (163)
T cd02166 2 ALFIGRFQPFHLGHLKVIKWILEE 25 (163)
T ss_pred eEEeeccCCCCHHHHHHHHHHHHH
Confidence 378888886 88888887776654
No 229
>KOG1050 consensus Trehalose-6-phosphate synthase component TPS1 and related subunits [Carbohydrate transport and metabolism]
Probab=32.18 E-value=2.3e+02 Score=30.52 Aligned_cols=99 Identities=18% Similarity=0.179 Sum_probs=68.1
Q ss_pred CCCEEEEEecCCCccChHHHHHHHHHHHHHccCCCCCCeEEEEcCCCCCCCHHHHHHHHHHHHhc--------C-C-CCc
Q 016925 268 EYPAIISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIEL--------K-V-DGN 337 (380)
Q Consensus 268 ~~~~il~VGRl~p~K~~d~li~A~~~l~~~~~~~~~~~~LvIvG~g~~~~~~~~~~~L~~la~~l--------g-l-~~~ 337 (380)
++..++-+-|+++-||...=+.||.++..++++-.+.+.|+.+..+......+ .++++..+..+ | . ...
T Consensus 275 g~klilgvD~~d~~kg~~~Kl~a~e~~L~~~pe~~~kVvliqi~~~~~~~~~~-v~~~k~~v~~~v~rIn~~f~~~~~~p 353 (732)
T KOG1050|consen 275 GKKLILGVDRLDSIKGIQLKLLAFEQFLEEYPEWIDKVVLIQIENPKRTDGKE-VEELKFCVSVHVRRINEKFGSASYQP 353 (732)
T ss_pred CCceEecccccccccCchHHHHHHHHHHHhChhhhceEEEEEEecCCcccchH-HHHHHHHhHhhhhhhhhccCCcccce
Confidence 45688999999999999999999999998886555566666666553322222 33444443321 1 1 145
Q ss_pred EE-EccCCCHHHHHHHHhhccEE-EeechhhH
Q 016925 338 VE-FYKNLLYRSVLTIFMHLFVF-TMKWQLVY 367 (380)
Q Consensus 338 V~-f~G~v~~~el~~ly~~a~vf-~~~~~~~~ 367 (380)
|+ +.-.++..++-.+|..||+. +-+|++.-
T Consensus 354 V~~~~~~~~~~~l~a~~~Vaev~~v~s~rdGm 385 (732)
T KOG1050|consen 354 VHSLLKDLPFLELLALYKVAEVCPVTSWRDGM 385 (732)
T ss_pred EEEeeccCCHHHHhhhHHhhhheeeccccccc
Confidence 54 45578999999999999994 46888753
No 230
>PRK15395 methyl-galactoside ABC transporter galactose-binding periplasmic protein MglB; Provisional
Probab=31.87 E-value=1.3e+02 Score=28.45 Aligned_cols=58 Identities=17% Similarity=0.137 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHhHhhhcCCCCcEEEEECCCCCCCCChhHHHHHHHHHHHHhCCCceEEEEcC
Q 016925 11 VITAVLASILILASHVHNARRNRTTSVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYTG 75 (380)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~p~~~~~GG~ervl~~la~~L~~~g~~~~v~v~t~ 75 (380)
++++.++++|.+++ -+.++..|+++.|.... .....++..+.+.+.+.| ++.+++.++
T Consensus 6 ~~~~~~~~~~~~~~-----~~~~~~~Igvv~~~~~~-~f~~~~~~gi~~~a~~~g-~~~~~~~~~ 63 (330)
T PRK15395 6 TLSALMASMLFGAA-----AAAADTRIGVTIYKYDD-NFMSVVRKAIEKDAKAAP-DVQLLMNDS 63 (330)
T ss_pred HHHHHHHHHhhcch-----hhcCCceEEEEEecCcc-hHHHHHHHHHHHHHHhcC-CeEEEEecC
Confidence 46666777777665 45667899999987643 356666666666666654 245554443
No 231
>PF01866 Diphthamide_syn: Putative diphthamide synthesis protein; InterPro: IPR002728 Members of this family include Q16439 from SWISSPROT, a candidate tumour suppressor gene [], and DPH2 from yeast P32461 from SWISSPROT [], which confers resistance to diphtheria toxin and has been found to be involved in diphthamide synthesis. Diphtheria toxin inhibits eukaryotic protein synthesis by ADP-ribosylating diphthamide, a posttranslationally modified histidine residue present in EF2. The exact function of the members of this family is unknown.; GO: 0017183 peptidyl-diphthamide biosynthetic process from peptidyl-histidine, 0005737 cytoplasm; PDB: 3LZD_B 3LZC_A.
Probab=31.69 E-value=49 Score=31.44 Aligned_cols=57 Identities=11% Similarity=-0.013 Sum_probs=36.6
Q ss_pred CCeEEEEcCCCCCCCHHHHHHHHHHHHhcCCCCcEEEccCCCHHHHHHHHhhccEEEe
Q 016925 304 RPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRSVLTIFMHLFVFTM 361 (380)
Q Consensus 304 ~~~LvIvG~g~~~~~~~~~~~L~~la~~lgl~~~V~f~G~v~~~el~~ly~~a~vf~~ 361 (380)
+.--+|+|.-......+..+.|++++++.|..-.+...|.++.+.|..+ ...|+||+
T Consensus 210 ~~~GIiv~tl~~q~~~~~~~~l~~~l~~~gkk~y~~~~~~i~~~kL~nf-~eid~fV~ 266 (307)
T PF01866_consen 210 KTFGIIVGTLGGQGYLELIKRLKKLLKKAGKKSYTLSVGEINPAKLANF-PEIDAFVQ 266 (307)
T ss_dssp -EEEEEEE-STTT--HHHHHHHHHHHHHTT-EEEEEEESS--GGGGTTS----SEEEE
T ss_pred CEEEEEEecCCCCCCHHHHHHHHHHHHHcCCEEEEEEECCCCHHHHhcC-cccCEEEE
Confidence 3445778854334456667899999999999999999999988888766 47788875
No 232
>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=31.43 E-value=1.8e+02 Score=27.41 Aligned_cols=52 Identities=15% Similarity=0.152 Sum_probs=40.1
Q ss_pred CCCeEEEEcCCCCCCCHHHHHHHHHHHHhcCCCCcEE-EccCCCHHHHHHHHhhc
Q 016925 303 PRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVE-FYKNLLYRSVLTIFMHL 356 (380)
Q Consensus 303 ~~~~LvIvG~g~~~~~~~~~~~L~~la~~lgl~~~V~-f~G~v~~~el~~ly~~a 356 (380)
|..-.+.+|+. +.+..|.+..++.++++|+.-.+. |...++++|+.+.+...
T Consensus 31 P~Laii~vg~d--~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~t~~~l~~~I~~l 83 (282)
T PRK14166 31 SCLAVILVGDN--PASQTYVKSKAKACEECGIKSLVYHLNENTTQNELLALINTL 83 (282)
T ss_pred ceEEEEEeCCC--HHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 65666777764 467789999999999999985555 66678888888888753
No 233
>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=30.71 E-value=2e+02 Score=27.10 Aligned_cols=69 Identities=12% Similarity=0.103 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHccCCCCCCeEEEEcCCCCCCCHHHHHHHHHHHHhcCCCCcEE-EccCCCHHHHHHHHhhc
Q 016925 285 PLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVE-FYKNLLYRSVLTIFMHL 356 (380)
Q Consensus 285 d~li~A~~~l~~~~~~~~~~~~LvIvG~g~~~~~~~~~~~L~~la~~lgl~~~V~-f~G~v~~~el~~ly~~a 356 (380)
+.+-+..+.++.+.. ..|..-.+.+|+. +.+..|.+..++.++++|+.-... |...++.+|+.+.+...
T Consensus 17 ~~lk~~i~~l~~~~~-~~P~Laii~vg~d--~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~s~~el~~~I~~l 86 (284)
T PRK14177 17 NEIRETIEERKTKNK-RIPKLATILVGNN--PASETYVSMKVKACHKVGMGSEMIRLKEQTTTEELLGVIDKL 86 (284)
T ss_pred HHHHHHHHHHHhcCC-CCCeEEEEEeCCC--hhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 444445555543310 1265666777764 467789999999999999985554 56677888888777653
No 234
>PRK02255 putrescine carbamoyltransferase; Provisional
Probab=30.68 E-value=4.1e+02 Score=25.70 Aligned_cols=80 Identities=13% Similarity=-0.022 Sum_probs=51.5
Q ss_pred CCCEEEEEecCCCccChHHHHHHHHHHHHHccCCCCCCeEEEEcCCCCCCCHHHHHHHHHHHHhcCCCCcEEEccCCCHH
Q 016925 268 EYPAIISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYR 347 (380)
Q Consensus 268 ~~~~il~VGRl~p~K~~d~li~A~~~l~~~~~~~~~~~~LvIvG~g~~~~~~~~~~~L~~la~~lgl~~~V~f~G~v~~~ 347 (380)
++..|.+||-. +| +...+..+..+ -+..+.+++........+..+.+++.+++.|. .|.+. +
T Consensus 153 ~glkv~~vGD~---~~---v~~Sl~~~~~~-----~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~--~~~~~-----~ 214 (338)
T PRK02255 153 EDCKVVFVGDA---TQ---VCVSLMFIATK-----MGMDFVHFGPKGYQLPEEHLAIAEENCEVSGG--SVLVT-----D 214 (338)
T ss_pred CCCEEEEECCC---ch---HHHHHHHHHHh-----CCCEEEEECCCccccCHHHHHHHHHHHHhcCC--eEEEE-----c
Confidence 35689999975 23 55565555444 36899999965332333455666666666554 35543 2
Q ss_pred HHHHHHhhccEEEe-echh
Q 016925 348 SVLTIFMHLFVFTM-KWQL 365 (380)
Q Consensus 348 el~~ly~~a~vf~~-~~~~ 365 (380)
++.+.+..||+..+ .|.+
T Consensus 215 d~~eav~~aDvvy~~~w~~ 233 (338)
T PRK02255 215 DVDEAVKDADFVYTDVWYG 233 (338)
T ss_pred CHHHHhCCCCEEEEcccHh
Confidence 67789999999665 7764
No 235
>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=30.61 E-value=1.3e+02 Score=28.47 Aligned_cols=51 Identities=12% Similarity=0.154 Sum_probs=40.2
Q ss_pred CCCeEEEEcCCCCCCCHHHHHHHHHHHHhcCCCCcE-EEccCCCHHHHHHHHhh
Q 016925 303 PRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNV-EFYKNLLYRSVLTIFMH 355 (380)
Q Consensus 303 ~~~~LvIvG~g~~~~~~~~~~~L~~la~~lgl~~~V-~f~G~v~~~el~~ly~~ 355 (380)
|..-.+.+|+. +.+..|.+..++.++++|+.-.+ .|...++++|+.+.+..
T Consensus 30 P~Laii~vg~d--~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~ 81 (287)
T PRK14173 30 PHLRVVRLGED--PASVSYVRLKDRQAKALGLRSQVEVLPESTSQEELLELIAR 81 (287)
T ss_pred CcEEEEEeCCC--HHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 76777788865 45678999999999999999655 46667888888877775
No 236
>PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=30.59 E-value=1.8e+02 Score=27.61 Aligned_cols=52 Identities=10% Similarity=0.062 Sum_probs=40.1
Q ss_pred CCCeEEEEcCCCCCCCHHHHHHHHHHHHhcCCCCcE-EEccCCCHHHHHHHHhhc
Q 016925 303 PRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNV-EFYKNLLYRSVLTIFMHL 356 (380)
Q Consensus 303 ~~~~LvIvG~g~~~~~~~~~~~L~~la~~lgl~~~V-~f~G~v~~~el~~ly~~a 356 (380)
|..-.+.+|+. +.+..|.+..++.++++|+.-.+ .|...++.+|+.+.+...
T Consensus 32 P~LaiI~vg~d--~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~l 84 (297)
T PRK14167 32 PGLATVLMSDD--PASETYVSMKQRDCEEVGIEAIDVEIDPDAPAEELYDTIDEL 84 (297)
T ss_pred ceEEEEEeCCC--HHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 55556777764 46778999999999999998654 566678888888887765
No 237
>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=30.59 E-value=1.9e+02 Score=27.23 Aligned_cols=65 Identities=12% Similarity=0.177 Sum_probs=45.9
Q ss_pred CCCeEEEEcCCCCCCCHHHHHHHHHHHHhcCCCCcE-EEccCCCHHHHHHHHhhc--c-----EEEe-echhhHHH
Q 016925 303 PRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNV-EFYKNLLYRSVLTIFMHL--F-----VFTM-KWQLVYDE 369 (380)
Q Consensus 303 ~~~~LvIvG~g~~~~~~~~~~~L~~la~~lgl~~~V-~f~G~v~~~el~~ly~~a--~-----vf~~-~~~~~~~~ 369 (380)
|..-.+.+|+. +.+..|.+..++.++++|+.-.. .|....+.+|+.+.+... | ++++ |-.+++++
T Consensus 32 P~La~I~vg~d--~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIivq~PlP~~i~~ 105 (282)
T PRK14180 32 PKLVAIIVGND--PASKTYVASKEKACAQVGIDSQVITLPEHTTESELLELIDQLNNDSSVHAILVQLPLPAHINK 105 (282)
T ss_pred CeEEEEEeCCC--HHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEcCCCCCCCCH
Confidence 65556777754 56778999999999999998655 456678888888887765 2 3443 55555554
No 238
>PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=30.55 E-value=2.1e+02 Score=27.92 Aligned_cols=68 Identities=13% Similarity=0.095 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHccCCCCCCeEEEEcCCCCCCCHHHHHHHHHHHHhcCCC-CcEEEccCCCHHHHHHHHhh
Q 016925 285 PLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVD-GNVEFYKNLLYRSVLTIFMH 355 (380)
Q Consensus 285 d~li~A~~~l~~~~~~~~~~~~LvIvG~g~~~~~~~~~~~L~~la~~lgl~-~~V~f~G~v~~~el~~ly~~ 355 (380)
+.+-+..+.++++. ...|..-.+.+|+. +.+..|.+..++.++++|+. ..+.|...++++|+.+++..
T Consensus 87 ~~lk~~v~~lk~~~-g~~P~LaiIlvG~d--paS~~Yv~~k~K~~e~~GI~~~~~~lpe~~te~ell~~I~~ 155 (364)
T PLN02616 87 DEITIEVSRMKESI-GVVPGLAVILVGDR--KDSATYVRNKKKACDSVGINSFEVRLPEDSTEQEVLKFISG 155 (364)
T ss_pred HHHHHHHHHHHHcC-CCCCeEEEEEeCCC--hhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 44444455554431 01366666777764 46778999999999999999 45556778888888777743
No 239
>PHA03392 egt ecdysteroid UDP-glucosyltransferase; Provisional
Probab=30.47 E-value=1.2e+02 Score=30.97 Aligned_cols=37 Identities=16% Similarity=0.156 Sum_probs=26.4
Q ss_pred EEEEECCCCCCCCChhHHHHHHHHHHHHhCCCceEEEEcCC
Q 016925 36 SVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYTGD 76 (380)
Q Consensus 36 ~I~~~~p~~~~~GG~ervl~~la~~L~~~g~~~~v~v~t~~ 76 (380)
||..+.|..+ +=--.+...++++|+++| |+|++++..
T Consensus 22 kIl~~~P~~~--~SH~~~~~~l~~~La~rG--H~VTvi~p~ 58 (507)
T PHA03392 22 RILAVFPTPA--YSHHSVFKVYVEALAERG--HNVTVIKPT 58 (507)
T ss_pred cEEEEcCCCC--CcHHHHHHHHHHHHHHcC--CeEEEEecc
Confidence 4888878652 223456778999999999 777777653
No 240
>PRK05805 phosphate butyryltransferase; Validated
Probab=30.25 E-value=2.5e+02 Score=26.56 Aligned_cols=79 Identities=18% Similarity=0.150 Sum_probs=50.4
Q ss_pred hHHHHHHHHHHHHHccCCCCCCeEEEEcCCCCCCCHHHHHHHHHHHHhcCC-CCcEEEccCCCH-HHH---HHHHh--hc
Q 016925 284 HPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKV-DGNVEFYKNLLY-RSV---LTIFM--HL 356 (380)
Q Consensus 284 ~d~li~A~~~l~~~~~~~~~~~~LvIvG~g~~~~~~~~~~~L~~la~~lgl-~~~V~f~G~v~~-~el---~~ly~--~a 356 (380)
-+..++|...+.+. +..+++++|+. +.++++++++|+ .+++++...-+. +.+ ..+.+ .|
T Consensus 27 d~~vl~Aa~~~~~~-----~~~~~iLVGd~---------~~I~~~l~~~~l~~~~ieIi~a~d~i~a~~~A~~lVk~GeA 92 (301)
T PRK05805 27 DEPVLEAVKEAKEL-----GIANAILVGDK---------EKIKEIAKEIDMDLEDFEIIDEKDNRKAALKAVELVSSGKA 92 (301)
T ss_pred CHHHHHHHHHHHHC-----CCceEEEECCH---------HHHHHHHHHcCCCccCcEEECCCCcHHHHHHHHHHHHCCCC
Confidence 45678888877553 67899999962 578888888776 345666543211 111 23444 45
Q ss_pred cEEEeechhhHHHHHHHHHhh
Q 016925 357 FVFTMKWQLVYDEFLKLYLQK 377 (380)
Q Consensus 357 ~vf~~~~~~~~~~~~~~~~~~ 377 (380)
|+++ .....-..+++--||+
T Consensus 93 Da~v-~G~~~t~~~lr~~l~~ 112 (301)
T PRK05805 93 DMVM-KGLVDTANFLRAVLNK 112 (301)
T ss_pred CEEe-cCccCHHHHHHHHHHH
Confidence 5554 7777777888766664
No 241
>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=30.15 E-value=2e+02 Score=27.12 Aligned_cols=52 Identities=10% Similarity=0.139 Sum_probs=41.1
Q ss_pred CCCeEEEEcCCCCCCCHHHHHHHHHHHHhcCCCC-cEEEccCCCHHHHHHHHhhc
Q 016925 303 PRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDG-NVEFYKNLLYRSVLTIFMHL 356 (380)
Q Consensus 303 ~~~~LvIvG~g~~~~~~~~~~~L~~la~~lgl~~-~V~f~G~v~~~el~~ly~~a 356 (380)
|..-.+.+|+. +.+..|.+..++.++++|+.- .+.|...++++++.+.+.+.
T Consensus 32 P~Laii~vgdd--~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~~l~~~I~~l 84 (281)
T PRK14183 32 PGLAVILVGDD--PASHTYVKMKAKACDRVGIYSITHEMPSTISQKEILETIAMM 84 (281)
T ss_pred CeEEEEEeCCC--HHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 66666777764 467789999999999999994 45677888988888877765
No 242
>PRK13793 nicotinamide-nucleotide adenylyltransferase; Provisional
Probab=29.76 E-value=1.1e+02 Score=27.10 Aligned_cols=36 Identities=22% Similarity=0.313 Sum_probs=26.0
Q ss_pred CEEEEEecCCC-ccChHHHHHHHHHHHHHccCCCCCCeEEEEcCC
Q 016925 270 PAIISVAQFRP-EKAHPLQLEAFSVALRKLDADLPRPRLQFVGSC 313 (380)
Q Consensus 270 ~~il~VGRl~p-~K~~d~li~A~~~l~~~~~~~~~~~~LvIvG~g 313 (380)
.+.+++||+.| ..||-.+|+....- -|--++.+|+.
T Consensus 5 d~~v~iGRFQPfH~GHl~~I~~al~~--------~devII~IGSA 41 (196)
T PRK13793 5 DYLVFIGRFQPFHLAHMQTIEIALQQ--------SRYVILALGSA 41 (196)
T ss_pred eEEEEEecCCCCcHHHHHHHHHHHHh--------CCEEEEEEccC
Confidence 57899999998 78888777666533 34455667765
No 243
>PF14237 DUF4339: Domain of unknown function (DUF4339)
Probab=29.73 E-value=20 Score=23.36 Aligned_cols=30 Identities=7% Similarity=0.099 Sum_probs=23.6
Q ss_pred ccCCCHHHHHHHHhhccE--EEeechhhHHHH
Q 016925 341 YKNLLYRSVLTIFMHLFV--FTMKWQLVYDEF 370 (380)
Q Consensus 341 ~G~v~~~el~~ly~~a~v--f~~~~~~~~~~~ 370 (380)
.|.++.++|..++++..+ -++-|.+.+++.
T Consensus 11 ~GP~s~~el~~l~~~g~i~~~tlvw~~g~~~W 42 (45)
T PF14237_consen 11 QGPFSLEELRQLISSGEIDPDTLVWKEGMSDW 42 (45)
T ss_pred ECCcCHHHHHHHHHcCCCCCCCeEeCCChhhc
Confidence 488888889999888888 557788877664
No 244
>PF00148 Oxidored_nitro: Nitrogenase component 1 type Oxidoreductase; InterPro: IPR000510 Enzymes belonging to this family include cofactor-requiring nitrogenases and protochlorophyllide reductase. The key enzymatic reactions in nitrogen fixation are catalysed by the nitrogenase complex, which has two components, the iron protein (component 2), and a component (component 1) which is either a molybdenum-iron, vanadium-iron or iron-iron protein. The enzyme (1.18.6.1 from EC) forms a hexamer of two alpha, two beta and two delta chains. Protochlorophyllide reductase (1.3.1.33 from EC) is involved in the light-dependent accumulation of chlorophyll, probably at the step of reduction of protochlorophyllide to chlorophyllide.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QH1_C 1QH8_A 1H1L_C 1QGU_A 3AEK_C 3AET_C 3AER_C 3AEU_A 3AES_C 3AEQ_C ....
Probab=29.62 E-value=2.8e+02 Score=27.06 Aligned_cols=88 Identities=15% Similarity=0.111 Sum_probs=55.5
Q ss_pred ccChHHHHHHHHHHH-HHccCCCCCCeEEEEcCCCCCCCHHHHHHHHHHHHhcCCCCcEEEccCCCHHHHHHHHhhccEE
Q 016925 281 EKAHPLQLEAFSVAL-RKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRSVLTIFMHLFVF 359 (380)
Q Consensus 281 ~K~~d~li~A~~~l~-~~~~~~~~~~~LvIvG~g~~~~~~~~~~~L~~la~~lgl~~~V~f~G~v~~~el~~ly~~a~vf 359 (380)
..|.+.+++++.... +.. +....-.+-|+|.... ...-.++++++.+++|++-+..|.+..+-+|+.. +.+|++-
T Consensus 121 ~~G~~~a~~~l~~~~~~~~-~~~~~~~VNiiG~~~~--~~~d~~el~~lL~~~Gi~v~~~~~~~~t~~e~~~-~~~A~ln 196 (398)
T PF00148_consen 121 SQGYDAALRALAEQLVKPP-EEKKPRSVNIIGGSPL--GPGDLEELKRLLEELGIEVNAVFPGGTTLEEIRK-APEAALN 196 (398)
T ss_dssp HHHHHHHHHHHHHHHTTGT-TTTSSSEEEEEEESTB--THHHHHHHHHHHHHTTEEEEEEEETTBCHHHHHH-GGGSSEE
T ss_pred cchHHHHHHHHHhhccccc-ccCCCCceEEecCcCC--CcccHHHHHHHHHHCCCceEEEeCCCCCHHHHHh-CCcCcEE
Confidence 456777777776544 211 1223457888886532 1134679999999999998888988888777754 4555554
Q ss_pred Eeechh--h-HHHHHH
Q 016925 360 TMKWQL--V-YDEFLK 372 (380)
Q Consensus 360 ~~~~~~--~-~~~~~~ 372 (380)
+...++ . ..++|+
T Consensus 197 iv~~~~~~~~~a~~L~ 212 (398)
T PF00148_consen 197 IVLCPEGGPYAAEWLE 212 (398)
T ss_dssp EESSCCHHHHHHHHHH
T ss_pred EEeccchhhHHHHHHH
Confidence 443333 2 445544
No 245
>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)
Probab=29.45 E-value=2.4e+02 Score=26.76 Aligned_cols=52 Identities=15% Similarity=0.189 Sum_probs=40.4
Q ss_pred CCCeEEEEcCCCCCCCHHHHHHHHHHHHhcCCCCcEE-EccCCCHHHHHHHHhhc
Q 016925 303 PRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVE-FYKNLLYRSVLTIFMHL 356 (380)
Q Consensus 303 ~~~~LvIvG~g~~~~~~~~~~~L~~la~~lgl~~~V~-f~G~v~~~el~~ly~~a 356 (380)
|..-.+.+|+. +.+..|.+..++.++++|+.-... |...++.+|+.+.+...
T Consensus 40 P~LaiI~vg~d--~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~s~~el~~~I~~l 92 (299)
T PLN02516 40 PGLAVVIVGSR--KDSQTYVNMKRKACAEVGIKSFDVDLPENISEAELISKVHEL 92 (299)
T ss_pred CeEEEEEECCC--hhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 65666777764 467789999999999999985544 56688999988888765
No 246
>cd01972 Nitrogenase_VnfE_like Nitrogenase_VnfE_like: VnfE subunit of the VnfEN complex_like. This group in addition to VnfE contains a subset of the alpha subunit of the nitrogenase MoFe protein and NifE-like proteins. The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of MoFe protein of the molybdenum(Mo)-nitrogenase. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to NifEN where it is further processed to FeMoco. VnfEN may similarly be a scaffolding protein for the iron-vanadium cofactor (FeVco) of the vanadium-dependent (V)-nitrogenase. NifE and NifN are essential for the Mo-nitrogenase, VnfE and VnfN are not essential for the V-nitrogenase. NifE and NifN can substitute when the vnfEN genes are inactivated.
Probab=29.42 E-value=3.1e+02 Score=27.26 Aligned_cols=95 Identities=12% Similarity=0.063 Sum_probs=55.2
Q ss_pred CccChHHHHHHHHHHHHHcc-CCCCCCeEEEEcCCCC--CCCHHHHHHHHHHHHhcCCCCcEEEccCCCHHHHHHHHhhc
Q 016925 280 PEKAHPLQLEAFSVALRKLD-ADLPRPRLQFVGSCRN--KSDEERLQSLKDKSIELKVDGNVEFYKNLLYRSVLTIFMHL 356 (380)
Q Consensus 280 p~K~~d~li~A~~~l~~~~~-~~~~~~~LvIvG~g~~--~~~~~~~~~L~~la~~lgl~~~V~f~G~v~~~el~~ly~~a 356 (380)
...|++..++++........ ...+.-.+=|+|.... .....-..+++++.+++|++-+..|.|.-+-+|+.. +.+|
T Consensus 136 ~~~G~~~a~~al~~~~~~~~~~~~~~~~VNliG~~~~~~~~~~~d~~ei~~lL~~~Gi~v~~~~~~~~~~~ei~~-~~~A 214 (426)
T cd01972 136 WRSGFDAAFHGILRHLVPPQDPTKQEDSVNIIGLWGGPERTEQEDVDEFKRLLNELGLRVNAIIAGGCSVEELER-ASEA 214 (426)
T ss_pred HhHHHHHHHHHHHHHhcCCCCCCCCCCCEEEEccCCCccccccccHHHHHHHHHHcCCeEEEEeCCCCCHHHHHh-cccC
Confidence 34678888888775432110 0112335777886532 111123578999999999999999999777677655 3344
Q ss_pred cE-EEeechhhHHHHHHHHHhh
Q 016925 357 FV-FTMKWQLVYDEFLKLYLQK 377 (380)
Q Consensus 357 ~v-f~~~~~~~~~~~~~~~~~~ 377 (380)
.+ .++. -.+|..+-.+|++
T Consensus 215 ~lniv~~--~~~g~~~a~~Lee 234 (426)
T cd01972 215 AANVTLC--LDLGYYLGAALEQ 234 (426)
T ss_pred CEEEEEC--hhHHHHHHHHHHH
Confidence 44 3332 1245555445443
No 247
>PF03358 FMN_red: NADPH-dependent FMN reductase; InterPro: IPR005025 NADPH-dependent FMN reductase (1.5.1.29 from EC) reduces FMN and also reduces riboflavin and FAD, although more slowly. Members of this entry catalyse the reaction NAD(P)H + FMN = NAD(P)(+) + FMNH(2).; PDB: 3SVL_B 3GFS_F 3GFQ_A 1NNI_1 2GSW_B 3GFR_D 1T0I_B 3D7N_A 2R97_A 3B6K_A ....
Probab=28.99 E-value=90 Score=25.71 Aligned_cols=80 Identities=6% Similarity=-0.057 Sum_probs=44.5
Q ss_pred EEEEEecCCCccChHHHHHHHHHHHHHccCCCCCCeEEEEcCCCCCCCHHHHHHHHHHHH-hcCCCCcEEEccCCCHHHH
Q 016925 271 AIISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSI-ELKVDGNVEFYKNLLYRSV 349 (380)
Q Consensus 271 ~il~VGRl~p~K~~d~li~A~~~l~~~~~~~~~~~~LvIvG~g~~~~~~~~~~~L~~la~-~lgl~~~V~f~G~v~~~el 349 (380)
.++..|-.++..+-+.+.+++....++ .+....++--.. ...+ -+..... ....+| +-+++
T Consensus 3 ilii~gS~r~~~~t~~l~~~~~~~l~~-----~g~e~~~i~l~~--~~~p---~~~~~~~~~~~~~d--------~~~~~ 64 (152)
T PF03358_consen 3 ILIINGSPRKNSNTRKLAEAVAEQLEE-----AGAEVEVIDLAD--YPLP---CCDGDFECPCYIPD--------DVQEL 64 (152)
T ss_dssp EEEEESSSSTTSHHHHHHHHHHHHHHH-----TTEEEEEEECTT--SHCH---HHHHHHHHTGCTSH--------HHHHH
T ss_pred EEEEECcCCCCCHHHHHHHHHHHHHHH-----cCCEEEEEeccc--cchh---hcccccccccCCcH--------HHHHH
Confidence 466677777778888888888777665 244444443210 0001 1111000 011111 22467
Q ss_pred HHHHhhccEEEeechhhHH
Q 016925 350 LTIFMHLFVFTMKWQLVYD 368 (380)
Q Consensus 350 ~~ly~~a~vf~~~~~~~~~ 368 (380)
.+.+.+||.+++...+-+|
T Consensus 65 ~~~l~~aD~iI~~sP~y~~ 83 (152)
T PF03358_consen 65 YDKLKEADGIIFASPVYNG 83 (152)
T ss_dssp HHHHHHSSEEEEEEEEBTT
T ss_pred HhceecCCeEEEeecEEcC
Confidence 7888999999987777665
No 248
>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=28.78 E-value=2.6e+02 Score=26.54 Aligned_cols=65 Identities=12% Similarity=0.081 Sum_probs=45.9
Q ss_pred CCCeEEEEcCCCCCCCHHHHHHHHHHHHhcCCCCcE-EEccCCCHHHHHHHHhhc--c-----EEEe-echhhHHH
Q 016925 303 PRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNV-EFYKNLLYRSVLTIFMHL--F-----VFTM-KWQLVYDE 369 (380)
Q Consensus 303 ~~~~LvIvG~g~~~~~~~~~~~L~~la~~lgl~~~V-~f~G~v~~~el~~ly~~a--~-----vf~~-~~~~~~~~ 369 (380)
|..-.+.+|+. +.+..|.+..++.++++|+.-.. .|...++.+++.+.+... | ++++ |-..++++
T Consensus 33 P~LaiI~vg~d--~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~e~~l~~~I~~lN~d~~V~GIlvqlPLP~~i~~ 106 (294)
T PRK14187 33 PCLIVILVGDD--PASQLYVRNKQRKAEMLGLRSETILLPSTISESSLIEKINELNNDDSVHGILVQLPVPNHIDK 106 (294)
T ss_pred CeEEEEEeCCC--hhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCH
Confidence 65666777764 46778999999999999998654 566778888887777644 2 3443 55556654
No 249
>PRK09271 flavodoxin; Provisional
Probab=28.76 E-value=96 Score=26.17 Aligned_cols=35 Identities=9% Similarity=-0.007 Sum_probs=27.3
Q ss_pred cEEEEECCCCCCCCChhHHHHHHHHHHHHhCCCceEEEE
Q 016925 35 TSVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVY 73 (380)
Q Consensus 35 ~~I~~~~p~~~~~GG~ervl~~la~~L~~~g~~~~v~v~ 73 (380)
|+|.++.-+. .|-.|+++..+++.|.+.| +++.++
T Consensus 1 mkv~IvY~S~--tGnTe~~A~~ia~~l~~~g--~~v~~~ 35 (160)
T PRK09271 1 MRILLAYASL--SGNTREVAREIEERCEEAG--HEVDWV 35 (160)
T ss_pred CeEEEEEEcC--CchHHHHHHHHHHHHHhCC--CeeEEE
Confidence 6777777654 5899999999999999988 555443
No 250
>COG3980 spsG Spore coat polysaccharide biosynthesis protein, predicted glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=28.54 E-value=1.1e+02 Score=28.89 Aligned_cols=76 Identities=16% Similarity=0.244 Sum_probs=50.2
Q ss_pred CCCEEEEEecCCCccChHHHHHHHHHHHHHccCCCCCCeE-EEEcCCCCCCCHHHHHHHHHHHHhcCCCCcEEEccCCCH
Q 016925 268 EYPAIISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRL-QFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLY 346 (380)
Q Consensus 268 ~~~~il~VGRl~p~K~~d~li~A~~~l~~~~~~~~~~~~L-vIvG~g~~~~~~~~~~~L~~la~~lgl~~~V~f~G~v~~ 346 (380)
.+.++++.|--+| ||+ .++.++.+.+ .++.+ +++|++. +....+++.+++. +++.+.-+ .
T Consensus 158 ~r~ilI~lGGsDp-k~l--t~kvl~~L~~------~~~nl~iV~gs~~-----p~l~~l~k~~~~~---~~i~~~~~--~ 218 (318)
T COG3980 158 KRDILITLGGSDP-KNL--TLKVLAELEQ------KNVNLHIVVGSSN-----PTLKNLRKRAEKY---PNINLYID--T 218 (318)
T ss_pred hheEEEEccCCCh-hhh--HHHHHHHhhc------cCeeEEEEecCCC-----cchhHHHHHHhhC---CCeeeEec--c
Confidence 4568999998887 443 4556666644 23455 4455432 2346777777664 57777655 5
Q ss_pred HHHHHHHhhccEEEee
Q 016925 347 RSVLTIFMHLFVFTMK 362 (380)
Q Consensus 347 ~el~~ly~~a~vf~~~ 362 (380)
+++++||..||+-+.+
T Consensus 219 ~dma~LMke~d~aI~A 234 (318)
T COG3980 219 NDMAELMKEADLAISA 234 (318)
T ss_pred hhHHHHHHhcchheec
Confidence 5899999999997653
No 251
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=28.50 E-value=5.9e+02 Score=25.20 Aligned_cols=23 Identities=13% Similarity=0.222 Sum_probs=11.3
Q ss_pred EEEEEecCCC-ccChHHHHHHHHH
Q 016925 271 AIISVAQFRP-EKAHPLQLEAFSV 293 (380)
Q Consensus 271 ~il~VGRl~p-~K~~d~li~A~~~ 293 (380)
..+++|+++| .+||..+|+....
T Consensus 54 ~~v~~G~FdP~H~GH~~lI~~A~~ 77 (399)
T PRK08099 54 IGVVFGKFYPLHTGHIYLIQRACS 77 (399)
T ss_pred EEEEEEecCCCCHHHHHHHHHHHH
Confidence 4455555554 4555555544443
No 252
>KOG1838 consensus Alpha/beta hydrolase [General function prediction only]
Probab=28.12 E-value=1.1e+02 Score=30.26 Aligned_cols=41 Identities=20% Similarity=0.336 Sum_probs=33.0
Q ss_pred CCcEEEEECCCCCCCCChhHHHHHHHHHHHHhCCCceEEEEcCC
Q 016925 33 RTTSVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYTGD 76 (380)
Q Consensus 33 ~~~~I~~~~p~~~~~GG~ervl~~la~~L~~~g~~~~v~v~t~~ 76 (380)
....+.++.|.+ ++|..|.++..++..++++| ++++|+=..
T Consensus 123 ~~~P~vvilpGl-tg~S~~~YVr~lv~~a~~~G--~r~VVfN~R 163 (409)
T KOG1838|consen 123 GTDPIVVILPGL-TGGSHESYVRHLVHEAQRKG--YRVVVFNHR 163 (409)
T ss_pred CCCcEEEEecCC-CCCChhHHHHHHHHHHHhCC--cEEEEECCC
Confidence 445677777777 46899999999999999999 888888543
No 253
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=27.99 E-value=2.2e+02 Score=26.90 Aligned_cols=52 Identities=15% Similarity=0.224 Sum_probs=40.0
Q ss_pred CCCeEEEEcCCCCCCCHHHHHHHHHHHHhcCCCCcE-EEccCCCHHHHHHHHhhc
Q 016925 303 PRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNV-EFYKNLLYRSVLTIFMHL 356 (380)
Q Consensus 303 ~~~~LvIvG~g~~~~~~~~~~~L~~la~~lgl~~~V-~f~G~v~~~el~~ly~~a 356 (380)
|..-.+.+|+. +.+..|.+..++.++++|+.-.+ .|...++.+|+.+.+.+.
T Consensus 33 p~Laii~vg~~--~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~~l~~~I~~l 85 (286)
T PRK14175 33 PKLSVILVGND--GASQSYVRSKKKAAEKIGMISEIVHLEETATEEEVLNELNRL 85 (286)
T ss_pred CeEEEEEeCCC--HHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 55556677764 46778999999999999998655 466678888888888755
No 254
>PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=27.79 E-value=2.4e+02 Score=26.75 Aligned_cols=66 Identities=17% Similarity=0.205 Sum_probs=48.2
Q ss_pred CCCeEEEEcCCCCCCCHHHHHHHHHHHHhcCCCCcE-EEccCCCHHHHHHHHhhc--c-----EEEe-echhhHHHH
Q 016925 303 PRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNV-EFYKNLLYRSVLTIFMHL--F-----VFTM-KWQLVYDEF 370 (380)
Q Consensus 303 ~~~~LvIvG~g~~~~~~~~~~~L~~la~~lgl~~~V-~f~G~v~~~el~~ly~~a--~-----vf~~-~~~~~~~~~ 370 (380)
|..-.+.+|+. +.+..|.+.-++.++++|++-.. .|...++.+|+.+.+.+. | ++++ |-.++.++.
T Consensus 32 P~Laii~vg~d--~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq~Plp~~id~~ 106 (295)
T PRK14174 32 PGLTVIIVGED--PASQVYVRNKAKSCKEIGMNSTVIELPADTTEEHLLKKIEDLNNDPDVHGILVQQPLPKQIDEF 106 (295)
T ss_pred CeEEEEEeCCC--hHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHH
Confidence 65666777764 46778999999999999999654 567788888888888766 2 3443 555666665
No 255
>cd03146 GAT1_Peptidase_E Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Peptidase E is believed to be a serine peptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow. Xenopus PepE is developmentally regulated in response to thyroid hormone and, it is thought to play a role in apoptosis during tail reabsorption.
Probab=27.73 E-value=4.3e+02 Score=23.36 Aligned_cols=67 Identities=15% Similarity=0.088 Sum_probs=47.4
Q ss_pred CCCeEEEEcCCCCCCCHHHHHHHHHHHHhc-CCCCcEEEccCCCHHHHHHHHhhccEEEeechhhHHHHHHH
Q 016925 303 PRPRLQFVGSCRNKSDEERLQSLKDKSIEL-KVDGNVEFYKNLLYRSVLTIFMHLFVFTMKWQLVYDEFLKL 373 (380)
Q Consensus 303 ~~~~LvIvG~g~~~~~~~~~~~L~~la~~l-gl~~~V~f~G~v~~~el~~ly~~a~vf~~~~~~~~~~~~~~ 373 (380)
++.++.++...+. ...+|....++..+++ |.+-.+... .+.++..+.+..||+..++.. .+..+++.
T Consensus 30 ~~~~i~~IptAs~-~~~~~~~~~~~a~~~l~G~~~~~~~~--~~~~~~~~~l~~ad~I~l~GG-~~~~~~~~ 97 (212)
T cd03146 30 ARPKVLFVPTASG-DRDEYTARFYAAFESLRGVEVSHLHL--FDTEDPLDALLEADVIYVGGG-NTFNLLAQ 97 (212)
T ss_pred CCCeEEEECCCCC-CHHHHHHHHHHHHhhccCcEEEEEec--cCcccHHHHHhcCCEEEECCc-hHHHHHHH
Confidence 5789999998754 3456778888888888 875433333 335577889999999998884 55555443
No 256
>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=27.72 E-value=2.2e+02 Score=27.69 Aligned_cols=70 Identities=7% Similarity=0.114 Sum_probs=47.2
Q ss_pred hHHHHHHHHHHHHHccCCCCCCeEEEEcCCCCCCCHHHHHHHHHHHHhcCCCCcEE-EccCCCHHHHHHHHhhc
Q 016925 284 HPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVE-FYKNLLYRSVLTIFMHL 356 (380)
Q Consensus 284 ~d~li~A~~~l~~~~~~~~~~~~LvIvG~g~~~~~~~~~~~L~~la~~lgl~~~V~-f~G~v~~~el~~ly~~a 356 (380)
.+.+-+..+.++++. ...|..-.+.+|+. +.+..|.+..++.++++|+.-.+. |...++.+|+.+.+...
T Consensus 69 ~~~lk~~v~~l~~~~-g~~P~LaiIlvGdd--paS~~Yv~~k~K~a~~~GI~~~~~~l~~~~te~ell~~I~~l 139 (345)
T PLN02897 69 RTKIASEVRKMKKAV-GKVPGLAVVLVGQQ--RDSQTYVRNKIKACEETGIKSLLAELPEDCTEGQILSALRKF 139 (345)
T ss_pred HHHHHHHHHHHHhcc-CCCCeEEEEEeCCC--hHHHHHHHHHHHHHHhcCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 344444455554331 02365556888875 456789999999999999986554 56678888888887754
No 257
>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=27.60 E-value=2.5e+02 Score=26.64 Aligned_cols=52 Identities=10% Similarity=0.073 Sum_probs=40.0
Q ss_pred CCCeEEEEcCCCCCCCHHHHHHHHHHHHhcCCCCcE-EEccCCCHHHHHHHHhhc
Q 016925 303 PRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNV-EFYKNLLYRSVLTIFMHL 356 (380)
Q Consensus 303 ~~~~LvIvG~g~~~~~~~~~~~L~~la~~lgl~~~V-~f~G~v~~~el~~ly~~a 356 (380)
|..-.+.+|+. +.+..|.+..++.++++|+.-.+ .|...++.+|+.+.+...
T Consensus 33 p~LaiI~vgdd--~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~l 85 (297)
T PRK14186 33 PGLAVLRVGDD--PASAVYVRNKEKACARVGIASFGKHLPADTSQAEVEALIAQL 85 (297)
T ss_pred ceEEEEEeCCC--hHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 55556777754 46778999999999999998544 466788998988888755
No 258
>PRK14985 maltodextrin phosphorylase; Provisional
Probab=27.44 E-value=1.2e+02 Score=32.92 Aligned_cols=88 Identities=9% Similarity=0.000 Sum_probs=56.6
Q ss_pred CCEEEEEecCCCccChHH-HHHHHHHHHHHccCCCCC-----CeEEEEcCCCCCCCHHHHHHHHHHHHhc--------CC
Q 016925 269 YPAIISVAQFRPEKAHPL-QLEAFSVALRKLDADLPR-----PRLQFVGSCRNKSDEERLQSLKDKSIEL--------KV 334 (380)
Q Consensus 269 ~~~il~VGRl~p~K~~d~-li~A~~~l~~~~~~~~~~-----~~LvIvG~g~~~~~~~~~~~L~~la~~l--------gl 334 (380)
.-+++++=|+...|+..+ ++....++.+-. ..|+ ..++++|..-.. . ....++-+++.+. .+
T Consensus 529 slfdvq~kR~heYKRq~Lnil~ii~~y~~i~--~~p~~~~~P~~~IFaGKAaP~-y-~~aK~iIklI~~va~~in~Dp~v 604 (798)
T PRK14985 529 AIFDVQIKRLHEYKRQHLNLLHILALYKEIR--ENPQADRVPRVFLFGAKAAPG-Y-YLAKNIIFAINKVAEVINNDPLV 604 (798)
T ss_pred hcchhhHhhhhhhhhhhhHhhhhHHHHHHHH--hCCCcCCCCeEEEEeecCCCC-c-HHHHHHHHHHHHHHHHhcCChhh
Confidence 346788889999999999 777765553221 1232 567888865321 1 2223444444433 24
Q ss_pred CC--cEEEccCCCHHHHHHHHhhccEEE
Q 016925 335 DG--NVEFYKNLLYRSVLTIFMHLFVFT 360 (380)
Q Consensus 335 ~~--~V~f~G~v~~~el~~ly~~a~vf~ 360 (380)
.+ +|.|+.+-.-+--..++..||+-.
T Consensus 605 ~~~lkVVFlenY~VslAe~lipaaDvse 632 (798)
T PRK14985 605 GDKLKVVFLPDYCVSAAELLIPAADISE 632 (798)
T ss_pred CCceeEEEeCCCChHHHHHHhhhhhhhh
Confidence 45 799999877667778999999843
No 259
>PF03358 FMN_red: NADPH-dependent FMN reductase; InterPro: IPR005025 NADPH-dependent FMN reductase (1.5.1.29 from EC) reduces FMN and also reduces riboflavin and FAD, although more slowly. Members of this entry catalyse the reaction NAD(P)H + FMN = NAD(P)(+) + FMNH(2).; PDB: 3SVL_B 3GFS_F 3GFQ_A 1NNI_1 2GSW_B 3GFR_D 1T0I_B 3D7N_A 2R97_A 3B6K_A ....
Probab=27.29 E-value=1.2e+02 Score=24.91 Aligned_cols=38 Identities=5% Similarity=0.143 Sum_probs=27.3
Q ss_pred cEEEEECCCCCCCCChhHHHHHHHHHHHHhCCCceEEEEc
Q 016925 35 TSVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYT 74 (380)
Q Consensus 35 ~~I~~~~p~~~~~GG~ervl~~la~~L~~~g~~~~v~v~t 74 (380)
|||+++.-+....|-.+.++-.+++.+.+.| +++.++-
T Consensus 1 Mkilii~gS~r~~~~t~~l~~~~~~~l~~~g--~e~~~i~ 38 (152)
T PF03358_consen 1 MKILIINGSPRKNSNTRKLAEAVAEQLEEAG--AEVEVID 38 (152)
T ss_dssp -EEEEEESSSSTTSHHHHHHHHHHHHHHHTT--EEEEEEE
T ss_pred CEEEEEECcCCCCCHHHHHHHHHHHHHHHcC--CEEEEEe
Confidence 7899998777555667777777777787777 6766664
No 260
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=27.20 E-value=2.3e+02 Score=21.59 Aligned_cols=11 Identities=9% Similarity=0.123 Sum_probs=5.7
Q ss_pred EccCCCHHHHH
Q 016925 340 FYKNLLYRSVL 350 (380)
Q Consensus 340 f~G~v~~~el~ 350 (380)
+++.+++.-..
T Consensus 55 ~t~~vsH~~~~ 65 (97)
T PF10087_consen 55 FTDYVSHNAMW 65 (97)
T ss_pred EeCCcChHHHH
Confidence 45566554433
No 261
>PF05141 DIT1_PvcA: Pyoverdine/dityrosine biosynthesis protein; InterPro: IPR007817 This entry is found in DIT1, a protein is involved in the synthesis of dityrosine []. Dityrosine is a sporulation-specific component of the Saccharomyces cerevisiae ascospore wall that is essential for the resistance of the spores to adverse environmental conditions. Q9I1L5 from SWISSPROT is involved in the biosynthesis of pyoverdine [].; PDB: 3E59_C.
Probab=27.08 E-value=62 Score=30.36 Aligned_cols=40 Identities=13% Similarity=0.283 Sum_probs=27.2
Q ss_pred CCCeEEEEcCC---------CCCCCHHHHHHHHHHHHhcCCCCcEEEccC
Q 016925 303 PRPRLQFVGSC---------RNKSDEERLQSLKDKSIELKVDGNVEFYKN 343 (380)
Q Consensus 303 ~~~~LvIvG~g---------~~~~~~~~~~~L~~la~~lgl~~~V~f~G~ 343 (380)
|..+++|+-+| ++..-..|-++|++++.++|..+ |.|.+-
T Consensus 58 PGa~v~I~SDG~Vf~DllgV~D~~v~~Y~~~Lr~l~~~~~~~~-I~f~~l 106 (278)
T PF05141_consen 58 PGAKVTIISDGHVFNDLLGVPDEEVWAYGEALRELAEEKGLDH-IKFFRL 106 (278)
T ss_dssp T-EEEEEE--HHHHGGGTT--HHHHHHHHHHHHHHHHHCT-TT-EEEE-G
T ss_pred CCcEEEEEecCcEeccccCCCHHHHHHHHHHHHHHHHhcCCCe-EEEeCH
Confidence 89999999776 11233567889999999999765 998764
No 262
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=26.83 E-value=94 Score=31.36 Aligned_cols=44 Identities=5% Similarity=-0.005 Sum_probs=29.6
Q ss_pred HHHHHHHHhcCCCCcEEE-ccCCCHHHHHHHHhhccEEEeechhhHHH
Q 016925 323 QSLKDKSIELKVDGNVEF-YKNLLYRSVLTIFMHLFVFTMKWQLVYDE 369 (380)
Q Consensus 323 ~~L~~la~~lgl~~~V~f-~G~v~~~el~~ly~~a~vf~~~~~~~~~~ 369 (380)
..+++++++.+.+++|++ .|.+.+=++++ ++|+.|..|+=.||.
T Consensus 228 ~~l~~~v~~n~w~~~V~vi~~d~r~v~lpe---kvDIIVSElLGsfg~ 272 (448)
T PF05185_consen 228 VTLQKRVNANGWGDKVTVIHGDMREVELPE---KVDIIVSELLGSFGD 272 (448)
T ss_dssp HHHHHHHHHTTTTTTEEEEES-TTTSCHSS----EEEEEE---BTTBT
T ss_pred HHHHHHHHhcCCCCeEEEEeCcccCCCCCC---ceeEEEEeccCCccc
Confidence 467788889999999996 56665445555 999999999977763
No 263
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=26.63 E-value=2.8e+02 Score=26.17 Aligned_cols=52 Identities=10% Similarity=0.199 Sum_probs=40.0
Q ss_pred CCCeEEEEcCCCCCCCHHHHHHHHHHHHhcCCCCcE-EEccCCCHHHHHHHHhhc
Q 016925 303 PRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNV-EFYKNLLYRSVLTIFMHL 356 (380)
Q Consensus 303 ~~~~LvIvG~g~~~~~~~~~~~L~~la~~lgl~~~V-~f~G~v~~~el~~ly~~a 356 (380)
|..-.+.+|+. +.+..|.+..++.++++|+.-.. .|...++.+|+.+.+.+.
T Consensus 33 P~Laii~vg~d--~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~~l~~~I~~l 85 (284)
T PRK14179 33 PGLVVILVGDN--PASQVYVRNKERSALAAGFKSEVVRLPETISQEELLDLIERY 85 (284)
T ss_pred ceEEEEEeCCC--hhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 55556777764 45678888999999999998644 567788889888888755
No 264
>CHL00076 chlB photochlorophyllide reductase subunit B
Probab=26.54 E-value=1.5e+02 Score=30.38 Aligned_cols=71 Identities=13% Similarity=0.150 Sum_probs=45.0
Q ss_pred CeEEEEcCCCCC-CCHHHHHHHHHHHHhcCCCCcEEEccCCCHHHHHHHHhhccEEEeechhhHHHHHHHHHhh
Q 016925 305 PRLQFVGSCRNK-SDEERLQSLKDKSIELKVDGNVEFYKNLLYRSVLTIFMHLFVFTMKWQLVYDEFLKLYLQK 377 (380)
Q Consensus 305 ~~LvIvG~g~~~-~~~~~~~~L~~la~~lgl~~~V~f~G~v~~~el~~ly~~a~vf~~~~~~~~~~~~~~~~~~ 377 (380)
-++=|+|..... .+..-..+|+++.+++|++-++.|.+.-+-+|+.. +.+|++=+...++ +|..+-.||++
T Consensus 164 ~~VNIIG~~~l~f~~~~Dl~eikrLL~~~Gi~vn~v~~~g~sl~di~~-~~~A~~NIvl~~~-~g~~~A~~Le~ 235 (513)
T CHL00076 164 PSVNIIGIFTLGFHNQHDCRELKRLLQDLGIEINQIIPEGGSVEDLKN-LPKAWFNIVPYRE-VGLMTAKYLEK 235 (513)
T ss_pred CcEEEEecCCCCCCCcchHHHHHHHHHHCCCeEEEEECCCCCHHHHHh-cccCcEEEEechh-hhHHHHHHHHH
Confidence 456666633111 11122578999999999998889988877777766 5555553333333 66666667765
No 265
>PF06180 CbiK: Cobalt chelatase (CbiK); InterPro: IPR010388 This group, typified by Salmonella typhimurium CbiK, contains anaerobic cobalt chelatases that act in the anaerobic cobalamin biosynthesis pathway [, ]. Cobalamin (vitamin B12) can be complexed with metal via ATP-dependent reactions (aerobic pathway) (e.g., in Pseudomonas denitrificans) or via ATP-independent reactions (anaerobic pathway) (e.g., in S. typhimurium) [, ]. The corresponding cobalt chelatases are not homologous. This group belongs to the class of ATP-independent, single-subunit chelatases that also includes distantly related protoporphyrin IX (PPIX) ferrochelatase (HemH) (Class II chelatases) []. The structure of S. typhimurium CbiK shows that it has a remarkably similar topology to Bacillus subtilis ferrochelatase despite only weak sequence conservation []. Both enzymes contain a histidine residue identified as the metal ion ligand, but CbiK contains a second histidine in place of the glutamic acid residue identified as a general base in PPIX ferrochelatase []. Site-directed mutagenesis has confirmed a role for this histidine and a nearby glutamic acid in cobalt binding, modulating metal ion specificity as well as catalytic efficiency []. It should be noted that CysG and Met8p, which are multifunctional proteins associated with siroheme biosynthesis, include chelatase activity and can therefore be considered as the third class of chelatases []. As with the class II chelatases, they do not require ATP for activity. However, they are not structurally similar to HemH or CbiK, and it is likely that they have arisen by the acquisition of a chelatase function within a dehydrogenase catalytic framework [, ].; GO: 0016852 sirohydrochlorin cobaltochelatase activity; PDB: 1QGO_A 2XWP_A 2XVZ_A 2XVX_A 2XVY_A.
Probab=26.14 E-value=2.4e+02 Score=26.16 Aligned_cols=87 Identities=10% Similarity=0.017 Sum_probs=39.6
Q ss_pred CccChHHHHHHHHHHHHHccCCCCCCeEEEEcCCCCCCCHHHHHHHHHHHHhcCCCCcEE--EccCCCHHHHHHHHhhcc
Q 016925 280 PEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVE--FYKNLLYRSVLTIFMHLF 357 (380)
Q Consensus 280 p~K~~d~li~A~~~l~~~~~~~~~~~~LvIvG~g~~~~~~~~~~~L~~la~~lgl~~~V~--f~G~v~~~el~~ly~~a~ 357 (380)
....++.+++|+...... ..++--++++|.|........+..|+...++.+.++-.. .-|..+-+++..-+.+..
T Consensus 120 ~~~D~~~va~aL~~~~~~---~~~~~a~vlmGHGt~h~an~~Y~~l~~~l~~~~~~~v~vgtvEG~P~~~~vi~~L~~~g 196 (262)
T PF06180_consen 120 SPEDYEAVAEALAEEFPK---KRKDEAVVLMGHGTPHPANAAYSALQAMLKKHGYPNVFVGTVEGYPSLEDVIARLKKKG 196 (262)
T ss_dssp SHHHHHHHHHHHHCCS-T---T-TTEEEEEEE---SCHHHHHHHHHHHHHHCCT-TTEEEEETTSSSBHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHhccc---cCCCCEEEEEeCCCCCCccHHHHHHHHHHHhCCCCeEEEEEeCCCCCHHHHHHHHHhcC
Confidence 344455555555432221 125566677776644444445566666666655432211 234445555555555433
Q ss_pred ---EEEeechhhHHH
Q 016925 358 ---VFTMKWQLVYDE 369 (380)
Q Consensus 358 ---vf~~~~~~~~~~ 369 (380)
+.++|.|.+=|.
T Consensus 197 ~k~V~L~PlMlVAGd 211 (262)
T PF06180_consen 197 IKKVHLIPLMLVAGD 211 (262)
T ss_dssp -SEEEEEEESSS--H
T ss_pred CCeEEEEecccccch
Confidence 456666655554
No 266
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=25.93 E-value=68 Score=24.85 Aligned_cols=20 Identities=25% Similarity=0.497 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHhHhhhc
Q 016925 11 VITAVLASILILASHVHNAR 30 (380)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~ 30 (380)
++..+||++|+++|.|-.++
T Consensus 8 lL~l~LA~lLlisSevaa~~ 27 (95)
T PF07172_consen 8 LLGLLLAALLLISSEVAARE 27 (95)
T ss_pred HHHHHHHHHHHHHhhhhhHH
Confidence 34556777777777765443
No 267
>PRK01153 nicotinamide-nucleotide adenylyltransferase; Provisional
Probab=25.91 E-value=3.4e+02 Score=23.34 Aligned_cols=22 Identities=18% Similarity=0.324 Sum_probs=17.5
Q ss_pred EEEEecCCC-ccChHHHHHHHHH
Q 016925 272 IISVAQFRP-EKAHPLQLEAFSV 293 (380)
Q Consensus 272 il~VGRl~p-~K~~d~li~A~~~ 293 (380)
-++.||+.| .+||..+++.+..
T Consensus 3 gl~~G~F~P~H~GHl~~i~~a~~ 25 (174)
T PRK01153 3 ALFIGRFQPFHKGHLEVIKWILE 25 (174)
T ss_pred EEEeeccCCCCHHHHHHHHHHHH
Confidence 578899996 8888888877665
No 268
>cd01840 SGNH_hydrolase_yrhL_like yrhL-like subfamily of SGNH-hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases. Most members of this sub-family appear to co-occur with N-terminal acyltransferase domains. Might be involved in lipid metabolism.
Probab=25.49 E-value=3.8e+02 Score=21.95 Aligned_cols=22 Identities=18% Similarity=0.092 Sum_probs=12.0
Q ss_pred HHHHHHHHHHhcCCCCcEEEcc
Q 016925 321 RLQSLKDKSIELKVDGNVEFYK 342 (380)
Q Consensus 321 ~~~~L~~la~~lgl~~~V~f~G 342 (380)
+.+.|+++++.++-..+|.+.+
T Consensus 65 ~~~nl~~ii~~~~~~~~ivlv~ 86 (150)
T cd01840 65 TKDQLDELLDALGPDRQVYLVN 86 (150)
T ss_pred CHHHHHHHHHHcCCCCEEEEEE
Confidence 3456666666665334555544
No 269
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=25.47 E-value=3.4e+02 Score=25.59 Aligned_cols=52 Identities=10% Similarity=0.074 Sum_probs=40.8
Q ss_pred CCCeEEEEcCCCCCCCHHHHHHHHHHHHhcCCCCcE-EEccCCCHHHHHHHHhhc
Q 016925 303 PRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNV-EFYKNLLYRSVLTIFMHL 356 (380)
Q Consensus 303 ~~~~LvIvG~g~~~~~~~~~~~L~~la~~lgl~~~V-~f~G~v~~~el~~ly~~a 356 (380)
|..-.+.+|+. +.+..|.+..++.++++|+.-.. .|...++.+|+.+.+...
T Consensus 39 P~Laii~vg~d--~aS~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~L 91 (287)
T PRK14176 39 PGLATILVGDD--PASKMYVRLKHKACERVGIRAEDQFLPADTTQEELLELIDSL 91 (287)
T ss_pred CeEEEEEECCC--cchHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 66666777865 46788999999999999998655 466678888888877765
No 270
>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional
Probab=25.45 E-value=5.9e+02 Score=24.20 Aligned_cols=81 Identities=14% Similarity=0.156 Sum_probs=47.4
Q ss_pred CCEE-EEEec-CCCccChH--HHHHHHHHHHHHccCCCCCCeEEEEcCCCCCCCHHHHHHHHHHHHhcCCC---CcEEEc
Q 016925 269 YPAI-ISVAQ-FRPEKAHP--LQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVD---GNVEFY 341 (380)
Q Consensus 269 ~~~i-l~VGR-l~p~K~~d--~li~A~~~l~~~~~~~~~~~~LvIvG~g~~~~~~~~~~~L~~la~~lgl~---~~V~f~ 341 (380)
+++| +..|- ..+.|... ...+....+.+ .+.++++.|+.. +. +..++.++.++-. ..+.+.
T Consensus 180 ~~~i~i~pga~~~~~K~Wp~e~~a~l~~~l~~------~~~~vvl~Gg~~---e~---~~~~~i~~~~~~~~~~~~~~l~ 247 (348)
T PRK10916 180 RPIIGFCPGAEFGPAKRWPHYHYAELAQQLID------EGYQVVLFGSAK---DH---EAGNEILAALNTEQQAWCRNLA 247 (348)
T ss_pred CCEEEEeCCCCCccccCCCHHHHHHHHHHHHH------CCCeEEEEeCHH---hH---HHHHHHHHhcccccccceeecc
Confidence 3443 55554 34677654 23333333322 468899999742 22 2333333333211 225678
Q ss_pred cCCCHHHHHHHHhhccEEEe
Q 016925 342 KNLLYRSVLTIFMHLFVFTM 361 (380)
Q Consensus 342 G~v~~~el~~ly~~a~vf~~ 361 (380)
|..+=.|+..+++.|++|+-
T Consensus 248 g~~sL~el~ali~~a~l~I~ 267 (348)
T PRK10916 248 GETQLEQAVILIAACKAIVT 267 (348)
T ss_pred CCCCHHHHHHHHHhCCEEEe
Confidence 88888899999999999885
No 271
>PRK13602 putative ribosomal protein L7Ae-like; Provisional
Probab=25.22 E-value=2.9e+02 Score=20.53 Aligned_cols=55 Identities=13% Similarity=0.051 Sum_probs=36.2
Q ss_pred ChHHHHHHHHHHHHHccCCCCCCeEEEEcCCCCCCCHHHHHHHHHHHHhcCCCCcEEEccCCCHHHHHHHH
Q 016925 283 AHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRSVLTIF 353 (380)
Q Consensus 283 ~~d~li~A~~~l~~~~~~~~~~~~LvIvG~g~~~~~~~~~~~L~~la~~lgl~~~V~f~G~v~~~el~~ly 353 (380)
|.+..++|+. + ...+|+|+... .+......++.++++.+++ +.+.+ +.+||-...
T Consensus 15 G~~~v~kai~---~------gkaklViiA~D---~~~~~~~~i~~~c~~~~Vp--~~~~~--s~~eLG~a~ 69 (82)
T PRK13602 15 GTKQTVKALK---R------GSVKEVVVAED---ADPRLTEKVEALANEKGVP--VSKVD--SMKKLGKAC 69 (82)
T ss_pred cHHHHHHHHH---c------CCeeEEEEECC---CCHHHHHHHHHHHHHcCCC--EEEEC--CHHHHHHHH
Confidence 4566555554 2 35677776653 2345778999999999987 66666 566765544
No 272
>PRK10653 D-ribose transporter subunit RbsB; Provisional
Probab=25.19 E-value=2.9e+02 Score=25.36 Aligned_cols=58 Identities=19% Similarity=0.118 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHhHhhhcCCCCcEEEEECCCCCCCCChhHHHHHHHHHHHHhCCCceEEEEcC
Q 016925 14 AVLASILILASHVHNARRNRTTSVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVYTG 75 (380)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~I~~~~p~~~~~GG~ervl~~la~~L~~~g~~~~v~v~t~ 75 (380)
++|.|...+..-+ |+....+..|+++.|.+... -...++..+...+.+.| +.+.++..
T Consensus 7 ~~~~~~~~~~~~~-~~~~~~~~~I~vi~~~~~~~-f~~~~~~~i~~~~~~~G--~~~~~~~~ 64 (295)
T PRK10653 7 ATLVSAVALSATV-SANAMAKDTIALVVSTLNNP-FFVSLKDGAQKEADKLG--YNLVVLDS 64 (295)
T ss_pred HHHHHHHHHHHhc-CCccccCCeEEEEecCCCCh-HHHHHHHHHHHHHHHcC--CeEEEecC
Confidence 4455545555555 77666788999999977543 45566666667777777 77766643
No 273
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=25.03 E-value=1e+02 Score=25.13 Aligned_cols=20 Identities=25% Similarity=0.624 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHhH
Q 016925 7 LIWAVITAVLASILILASHV 26 (380)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~ 26 (380)
.|++|+.+|++.||+++--+
T Consensus 69 Ii~gv~aGvIg~Illi~y~i 88 (122)
T PF01102_consen 69 IIFGVMAGVIGIILLISYCI 88 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHH
Confidence 46777777777776554433
No 274
>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=24.97 E-value=2e+02 Score=27.10 Aligned_cols=52 Identities=17% Similarity=0.158 Sum_probs=41.0
Q ss_pred CCCeEEEEcCCCCCCCHHHHHHHHHHHHhcCCCCcE-EEccCCCHHHHHHHHhhc
Q 016925 303 PRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNV-EFYKNLLYRSVLTIFMHL 356 (380)
Q Consensus 303 ~~~~LvIvG~g~~~~~~~~~~~L~~la~~lgl~~~V-~f~G~v~~~el~~ly~~a 356 (380)
|..-.+.+|+. +.+..|.+.-++.++++|+.... .|...++.+|+.+.+...
T Consensus 27 P~Laii~vg~d--~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~l 79 (279)
T PRK14178 27 PRLATVIVGDD--PASQMYVRMKHRACERVGIGSVGIELPGDATTRTVLERIRRL 79 (279)
T ss_pred CeEEEEEeCCC--hhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 66667777865 45778999999999999998655 477788989988888763
No 275
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=24.77 E-value=3e+02 Score=25.97 Aligned_cols=52 Identities=13% Similarity=0.238 Sum_probs=40.1
Q ss_pred CCCeEEEEcCCCCCCCHHHHHHHHHHHHhcCCCCcE-EEccCCCHHHHHHHHhhc
Q 016925 303 PRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNV-EFYKNLLYRSVLTIFMHL 356 (380)
Q Consensus 303 ~~~~LvIvG~g~~~~~~~~~~~L~~la~~lgl~~~V-~f~G~v~~~el~~ly~~a 356 (380)
|..-.+.+|+. +.+..|.+..++.++++|+.-.+ .|...++.+|+.+.+.+.
T Consensus 32 P~LaiI~vg~d--~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~l 84 (285)
T PRK14191 32 PKLAVILVGKD--PASQTYVNMKIKACERVGMDSDLHTLQENTTEAELLSLIKDL 84 (285)
T ss_pred CeEEEEEeCCC--HHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 65566677764 46778999999999999998655 466678888888887764
No 276
>TIGR00658 orni_carb_tr ornithine carbamoyltransferase. Most OTCases are homotrimers, but the homotrimers are organized into dodecamers built from four trimers in at least two species; the catabolic OTCase of Pseudomonas aeruginosa is allosterically regulated, while OTCase of the extreme thermophile Pyrococcus furiosus shows both allostery and thermophily.
Probab=24.49 E-value=6.1e+02 Score=24.01 Aligned_cols=79 Identities=11% Similarity=0.039 Sum_probs=51.2
Q ss_pred CCCEEEEEecCCCccChHHHHHHHHHHHHHccCCCCCCeEEEEcCCCCCCCHHHHHHHHHHHHhcCCCCcEEEccCCCHH
Q 016925 268 EYPAIISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYR 347 (380)
Q Consensus 268 ~~~~il~VGRl~p~K~~d~li~A~~~l~~~~~~~~~~~~LvIvG~g~~~~~~~~~~~L~~la~~lgl~~~V~f~G~v~~~ 347 (380)
++..|.+||-+ ++ ..+.+..+... -+..+.+++........+..+.+++.+++.|. .+... .
T Consensus 147 ~g~~v~~vGd~---~~---v~~Sl~~~l~~-----~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~--~~~~~-----~ 208 (304)
T TIGR00658 147 KGVKVVYVGDG---NN---VCNSLMLAGAK-----LGMDVVVATPEGYEPDADIVKKAQEIAKENGG--SVELT-----H 208 (304)
T ss_pred CCcEEEEEeCC---Cc---hHHHHHHHHHH-----cCCEEEEECCchhcCCHHHHHHHHHHHHHcCC--eEEEE-----c
Confidence 45689999976 23 55665555554 36899999965333334555666676777663 34433 2
Q ss_pred HHHHHHhhccEEEe-ech
Q 016925 348 SVLTIFMHLFVFTM-KWQ 364 (380)
Q Consensus 348 el~~ly~~a~vf~~-~~~ 364 (380)
++.+.+..||+..+ .|+
T Consensus 209 d~~~a~~~aDvvy~~~w~ 226 (304)
T TIGR00658 209 DPVEAVKGADVIYTDVWV 226 (304)
T ss_pred CHHHHhCCCCEEEEcCcc
Confidence 57789999999776 454
No 277
>cd01976 Nitrogenase_MoFe_alpha Nitrogenase_MoFe_alpha_II: Nitrogenase MoFe protein, beta subunit. A group of proteins similar to the alpha subunit of the MoFe protein of the molybdenum (Mo-) nitrogenase. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Mo-nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=24.48 E-value=5.9e+02 Score=25.28 Aligned_cols=77 Identities=9% Similarity=0.012 Sum_probs=48.8
Q ss_pred ccChHHHHHHHHH-HHHHc-cCCCCCCeEEEEcCCCCCCCHHHHHHHHHHHHhcCCCCcEEEccCCCHHHHHHHHhhccE
Q 016925 281 EKAHPLQLEAFSV-ALRKL-DADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRSVLTIFMHLFV 358 (380)
Q Consensus 281 ~K~~d~li~A~~~-l~~~~-~~~~~~~~LvIvG~g~~~~~~~~~~~L~~la~~lgl~~~V~f~G~v~~~el~~ly~~a~v 358 (380)
..|++...+++.. +.... +...++-.+-|+|+.....+ ..+|+++.+++|++-+..|.|.-+-+|+.. +.+|.+
T Consensus 147 ~~G~~~a~~ai~~~l~~~~~~~~~~~~~VNiiG~~~~~~d---~~el~~lL~~~Gi~v~~~~~~~~t~eei~~-~~~A~l 222 (421)
T cd01976 147 SLGHHIANDAIRDHILGKRNEFEPTPYDVNIIGDYNIGGD---AWASRILLEEMGLRVVAQWSGDGTLNEMEN-AHKAKL 222 (421)
T ss_pred cHHHHHHHHHHHHHHhccCCccCCCCCeEEEEecCCCCcc---HHHHHHHHHHcCCeEEEEeCCCCCHHHHHh-cccCCE
Confidence 3467776666654 22111 00112456788886432222 367999999999998888999888888865 555555
Q ss_pred -EEe
Q 016925 359 -FTM 361 (380)
Q Consensus 359 -f~~ 361 (380)
.++
T Consensus 223 niv~ 226 (421)
T cd01976 223 NLIH 226 (421)
T ss_pred EEEE
Confidence 444
No 278
>PRK04284 ornithine carbamoyltransferase; Provisional
Probab=24.40 E-value=6.4e+02 Score=24.25 Aligned_cols=122 Identities=13% Similarity=-0.002 Sum_probs=71.5
Q ss_pred hcCCCEEEE--cCHHHHHHHHHHhCCCCceEEecCCCCCCCCCCC----------CC-CCCCCCCEEEEEecCCCccChH
Q 016925 219 GSCADLAMV--NSSWTQSHIEKLWGIPDRIKRVYPPCDTSGLQVL----------PL-ERSTEYPAIISVAQFRPEKAHP 285 (380)
Q Consensus 219 ~~~ad~ii~--~S~~~~~~i~~~~~~~~k~~vi~~gvd~~~~~~~----------~~-~~~~~~~~il~VGRl~p~K~~d 285 (380)
.+.+|.|++ .++...+++.+... +-|| |+-+ ....|. .. ...-++..|.+||-+. +
T Consensus 98 s~y~D~iviR~~~~~~~~~~a~~s~----vPVI-Na~~-~~~HPtQaL~Dl~Ti~e~~~g~l~g~kia~vGD~~---~-- 166 (332)
T PRK04284 98 GGMYDGIEYRGFSQRTVETLAEYSG----VPVW-NGLT-DEDHPTQVLADFLTAKEHLKKPYKDIKFTYVGDGR---N-- 166 (332)
T ss_pred HHhCCEEEEecCchHHHHHHHHhCC----CCEE-ECCC-CCCChHHHHHHHHHHHHHhcCCcCCcEEEEecCCC---c--
Confidence 346898885 45555566655432 3345 5544 334441 11 1112457899999652 2
Q ss_pred HHHHHHHHHHHHccCCCCCCeEEEEcCCCCCCCHHHHHHHHHHHHhcCCCCcEEEccCCCHHHHHHHHhhccEEEe-ec
Q 016925 286 LQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRSVLTIFMHLFVFTM-KW 363 (380)
Q Consensus 286 ~li~A~~~l~~~~~~~~~~~~LvIvG~g~~~~~~~~~~~L~~la~~lgl~~~V~f~G~v~~~el~~ly~~a~vf~~-~~ 363 (380)
...+++..+... -+..+.+++........+..+++++.+++.|.. +... +++.+.+..||+..+ .|
T Consensus 167 ~v~~Sl~~~~~~-----~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~--~~~~-----~d~~ea~~~aDvvy~~~w 233 (332)
T PRK04284 167 NVANALMQGAAI-----MGMDFHLVCPKELNPDDELLNKCKEIAAETGGK--ITIT-----DDIDEGVKGSDVIYTDVW 233 (332)
T ss_pred chHHHHHHHHHH-----cCCEEEEECCccccCCHHHHHHHHHHHHHcCCe--EEEE-----cCHHHHhCCCCEEEECCc
Confidence 245555555444 378999999653333445566666666666643 5544 257788999999766 45
No 279
>PRK12562 ornithine carbamoyltransferase subunit F; Provisional
Probab=24.39 E-value=6.5e+02 Score=24.29 Aligned_cols=79 Identities=6% Similarity=-0.021 Sum_probs=49.4
Q ss_pred CCCEEEEEecCCCccChHHHHHHHHHHHHHccCCCCCCeEEEEcCCCCCCCHHHHHHHHHHHHhcCCCCcEEEccCCCHH
Q 016925 268 EYPAIISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYR 347 (380)
Q Consensus 268 ~~~~il~VGRl~p~K~~d~li~A~~~l~~~~~~~~~~~~LvIvG~g~~~~~~~~~~~L~~la~~lgl~~~V~f~G~v~~~ 347 (380)
+.-.+.+||-+.. | +.+.+..+... -+..+.++|........++.+++++.+++.|. .+... +
T Consensus 155 ~gl~va~vGD~~~--~---v~~S~~~~~~~-----~G~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~--~~~~~-----~ 217 (334)
T PRK12562 155 NEMTLVYAGDARN--N---MGNSMLEAAAL-----TGLDLRLVAPQACWPEASLVAECSALAQKHGG--KITLT-----E 217 (334)
T ss_pred CCcEEEEECCCCC--C---HHHHHHHHHHH-----cCCEEEEECCcccCCcHHHHHHHHHHHHHcCC--eEEEE-----c
Confidence 3568999996631 2 34454444443 36899999964333334455666677776663 35433 3
Q ss_pred HHHHHHhhccEEEe-ec
Q 016925 348 SVLTIFMHLFVFTM-KW 363 (380)
Q Consensus 348 el~~ly~~a~vf~~-~~ 363 (380)
++.+.++.||+..+ .|
T Consensus 218 d~~~a~~~aDvvyt~~w 234 (334)
T PRK12562 218 DIAAGVKGADFIYTDVW 234 (334)
T ss_pred CHHHHhCCCCEEEEcCc
Confidence 57789999999665 55
No 280
>PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=24.34 E-value=2.7e+02 Score=26.35 Aligned_cols=52 Identities=13% Similarity=0.155 Sum_probs=39.6
Q ss_pred CCCeEEEEcCCCCCCCHHHHHHHHHHHHhcCCCCcE-EEccCCCHHHHHHHHhhc
Q 016925 303 PRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNV-EFYKNLLYRSVLTIFMHL 356 (380)
Q Consensus 303 ~~~~LvIvG~g~~~~~~~~~~~L~~la~~lgl~~~V-~f~G~v~~~el~~ly~~a 356 (380)
|..-.+.+|+. +.+..|.+..++.++++|+.-.+ .|...++.+|+.+.+...
T Consensus 32 P~LaiI~vg~d--~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~l 84 (293)
T PRK14185 32 PHLAAILVGHD--GGSETYVANKVKACEECGFKSSLIRYESDVTEEELLAKVREL 84 (293)
T ss_pred CeEEEEEeCCC--HHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 65666777764 45778889999999999998654 567778888888777665
No 281
>PF13167 GTP-bdg_N: GTP-binding GTPase N-terminal
Probab=24.19 E-value=3.4e+02 Score=20.97 Aligned_cols=72 Identities=19% Similarity=0.217 Sum_probs=45.7
Q ss_pred ccChHHHHHHHHHHHHHcc----------CCCCCCeEEEEcCCCCCCCHHHHHHHHHHHHhcCCCCcEEEccCCCHHHHH
Q 016925 281 EKAHPLQLEAFSVALRKLD----------ADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRSVL 350 (380)
Q Consensus 281 ~K~~d~li~A~~~l~~~~~----------~~~~~~~LvIvG~g~~~~~~~~~~~L~~la~~lgl~~~V~f~G~v~~~el~ 350 (380)
+.+.+.-++-+..|.+... ...||.+ ..+|.|. .++++++++..+. +-|.|-+.+++.+..
T Consensus 3 ~~~~~~~l~El~~L~~t~g~~vv~~~~q~~~~~~p~-~~iG~GK-------~eei~~~~~~~~~-d~vvfd~~Lsp~Q~r 73 (95)
T PF13167_consen 3 DYDFEESLEELEELAETAGYEVVGTVVQKRRKPDPK-TYIGSGK-------VEEIKELIEELDA-DLVVFDNELSPSQQR 73 (95)
T ss_pred cccHHHHHHHHHHHHHHCCCeEEEEEEecCCCCCcc-eeechhH-------HHHHHHHHhhcCC-CEEEECCCCCHHHHH
Confidence 3445555555555544420 1125555 4556552 5899999999886 688898899988887
Q ss_pred HHHhhccEEEe
Q 016925 351 TIFMHLFVFTM 361 (380)
Q Consensus 351 ~ly~~a~vf~~ 361 (380)
.+=+.-.+=|+
T Consensus 74 NLe~~~~~~V~ 84 (95)
T PF13167_consen 74 NLEKALGVKVI 84 (95)
T ss_pred HHHHHHCCeee
Confidence 77666554433
No 282
>PHA03392 egt ecdysteroid UDP-glucosyltransferase; Provisional
Probab=23.32 E-value=3.1e+02 Score=28.13 Aligned_cols=67 Identities=13% Similarity=0.086 Sum_probs=39.8
Q ss_pred CCEEEEEecCCC-----ccChHHHHHHHHHHHHHccCCCCCCeEEEEcCCCCCCCHHHHHHHHHHHHhcCCCCcEEEccC
Q 016925 269 YPAIISVAQFRP-----EKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKN 343 (380)
Q Consensus 269 ~~~il~VGRl~p-----~K~~d~li~A~~~l~~~~~~~~~~~~LvIvG~g~~~~~~~~~~~L~~la~~lgl~~~V~f~G~ 343 (380)
+..+++.|.... .+-.+.+++|++.+ + .+++...++.. .. .+++++|.+.+.
T Consensus 297 g~V~vS~GS~~~~~~~~~~~~~~~l~a~~~l--------~-~~viw~~~~~~---------~~-----~~~p~Nv~i~~w 353 (507)
T PHA03392 297 GVVYVSFGSSIDTNDMDNEFLQMLLRTFKKL--------P-YNVLWKYDGEV---------EA-----INLPANVLTQKW 353 (507)
T ss_pred cEEEEECCCCCcCCCCCHHHHHHHHHHHHhC--------C-CeEEEEECCCc---------Cc-----ccCCCceEEecC
Confidence 356788887643 33345555555543 4 46655554211 01 256899999999
Q ss_pred CCHHHHHHHH--hhccEEEe
Q 016925 344 LLYRSVLTIF--MHLFVFTM 361 (380)
Q Consensus 344 v~~~el~~ly--~~a~vf~~ 361 (380)
+|.. +++ .++++|+.
T Consensus 354 ~Pq~---~lL~hp~v~~fIt 370 (507)
T PHA03392 354 FPQR---AVLKHKNVKAFVT 370 (507)
T ss_pred CCHH---HHhcCCCCCEEEe
Confidence 9864 466 45777764
No 283
>PF01784 NIF3: NIF3 (NGG1p interacting factor 3); InterPro: IPR002678 This family contains several NIF3 (NGG1p interacting factor 3) protein homologues. NIF3 interacts with the yeast transcriptional coactivator NGG1p which is part of the ADA complex, the exact function of this interaction is unknown [][].; PDB: 1NMO_F 1NMP_B 2GX8_C 2FYW_B 2NYD_A 3LNL_A 2YYB_A 3RXY_F.
Probab=22.99 E-value=3.3e+02 Score=24.73 Aligned_cols=93 Identities=13% Similarity=0.073 Sum_probs=53.2
Q ss_pred CEEEEEecCCCccChHHHHHHHHHHHHHccCCCCCCeEE-----------EEcCCCCCCCHHHHHHHHHHHHhcCCCCcE
Q 016925 270 PAIISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQ-----------FVGSCRNKSDEERLQSLKDKSIELKVDGNV 338 (380)
Q Consensus 270 ~~il~VGRl~p~K~~d~li~A~~~l~~~~~~~~~~~~Lv-----------IvG~g~~~~~~~~~~~L~~la~~lgl~~~V 338 (380)
.-+..+|++.+...++.+++.++..... +.+++. |+|+.. . ++-+.+.+.|. ++
T Consensus 130 ~g~g~i~~l~~~~s~~el~~~vk~~l~~-----~~vr~~g~~~~~v~rVav~~GsG----~----~~i~~a~~~g~--D~ 194 (241)
T PF01784_consen 130 YGLGRIGELPEPMSLEELAERVKEKLGL-----PGVRVVGDPDKKVKRVAVCGGSG----G----SFIEEAAEAGA--DV 194 (241)
T ss_dssp EECEEEEEEEEEEEHHHHHHHHHHHTTS-----S-EEEESCTTSEEEEEEEECSSS----G----GGHHHHHHTTS--SE
T ss_pred ceeeeEeecCCCCCHHHHHHHHHHHcCC-----CcEEecCCCCCcccEEEEEcccC----c----cHHHHHHhCCC--eE
Confidence 3567788888777888888777765422 333333 222211 1 23345556666 49
Q ss_pred EEccCCCHHHHHHHHhhccEEEe-ec--hhhHH-HHHHHHHhh
Q 016925 339 EFYKNLLYRSVLTIFMHLFVFTM-KW--QLVYD-EFLKLYLQK 377 (380)
Q Consensus 339 ~f~G~v~~~el~~ly~~a~vf~~-~~--~~~~~-~~~~~~~~~ 377 (380)
.++|.+.+.+..+.....-.++. .+ .|.+| +.|..+|++
T Consensus 195 ~ITGd~~~h~~~~a~~~g~~lI~~gH~~sE~~~~~~l~~~L~~ 237 (241)
T PF01784_consen 195 YITGDIKYHDAQDAKENGINLIDAGHYASERPGMEALAEWLKE 237 (241)
T ss_dssp EEESS--HHHHHHHHHCTSEEEE--HHHHGGHHHHHHHHHHHH
T ss_pred EEEccCcHHHHHHHHHCCCEEEEcCCHHHHHHHHHHHHHHHHH
Confidence 99999999998888766544443 22 34443 556666654
No 284
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=22.98 E-value=3.1e+02 Score=25.85 Aligned_cols=52 Identities=15% Similarity=0.131 Sum_probs=40.1
Q ss_pred CCCeEEEEcCCCCCCCHHHHHHHHHHHHhcCCCCcEE-EccCCCHHHHHHHHhhc
Q 016925 303 PRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVE-FYKNLLYRSVLTIFMHL 356 (380)
Q Consensus 303 ~~~~LvIvG~g~~~~~~~~~~~L~~la~~lgl~~~V~-f~G~v~~~el~~ly~~a 356 (380)
|..-.+.+|+. +.+..|.+..++.++++|+.-... |...++.+|+.+.+.+.
T Consensus 34 P~Laii~vg~d--~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~s~~el~~~I~~l 86 (285)
T PRK10792 34 PGLAVVLVGSD--PASQVYVASKRKACEEVGFVSRSYDLPETTSEAELLALIDEL 86 (285)
T ss_pred ceEEEEEeCCC--HHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 55556777764 456789999999999999985544 66678999988888764
No 285
>COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]
Probab=22.98 E-value=3.9e+02 Score=24.39 Aligned_cols=77 Identities=13% Similarity=0.055 Sum_probs=41.3
Q ss_pred EEEEecCCCccChHHHHHHHHHHHHHccCCCCCCeEEEEcCCCCCCCHHHHHHHHHHHH-hcCCCCcEEEccCCCHHHHH
Q 016925 272 IISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSI-ELKVDGNVEFYKNLLYRSVL 350 (380)
Q Consensus 272 il~VGRl~p~K~~d~li~A~~~l~~~~~~~~~~~~LvIvG~g~~~~~~~~~~~L~~la~-~lgl~~~V~f~G~v~~~el~ 350 (380)
-.++--++|.|- +..-+.+..+.+ ...-.+++|+...- ..+..+++-+.++ ..+|+ -|.|.|+.+
T Consensus 16 ~~H~tliDP~k~-~~~~ei~~~~~~------~GTDaImIGGS~gv-t~~~~~~~v~~ik~~~~lP-vilfP~~~~----- 81 (240)
T COG1646 16 KRHLTLIDPDKT-EEADEIAEAAAE------AGTDAIMIGGSDGV-TEENVDNVVEAIKERTDLP-VILFPGSPS----- 81 (240)
T ss_pred ceEEEEeCcccc-cccHHHHHHHHH------cCCCEEEECCcccc-cHHHHHHHHHHHHhhcCCC-EEEecCChh-----
Confidence 345555677773 223333333333 35678899975432 2233444455555 66665 566777643
Q ss_pred HHHhhccE-EEee
Q 016925 351 TIFMHLFV-FTMK 362 (380)
Q Consensus 351 ~ly~~a~v-f~~~ 362 (380)
.+-..||. |.|+
T Consensus 82 ~is~~aDavff~s 94 (240)
T COG1646 82 GISPYADAVFFPS 94 (240)
T ss_pred ccCccCCeEEEEE
Confidence 34446776 4443
No 286
>TIGR02014 BchZ chlorophyllide reductase subunit Z. This model represents the Z subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase.
Probab=22.88 E-value=4.5e+02 Score=26.70 Aligned_cols=68 Identities=7% Similarity=0.077 Sum_probs=45.8
Q ss_pred CCeEEEEcCCCCC-CCHHHHHHHHHHHHhcCCCCcEEEccCCCHHHHHHHHhhccEEEeechhhHHHHHHH
Q 016925 304 RPRLQFVGSCRNK-SDEERLQSLKDKSIELKVDGNVEFYKNLLYRSVLTIFMHLFVFTMKWQLVYDEFLKL 373 (380)
Q Consensus 304 ~~~LvIvG~g~~~-~~~~~~~~L~~la~~lgl~~~V~f~G~v~~~el~~ly~~a~vf~~~~~~~~~~~~~~ 373 (380)
.-++=|+|..... ....-.++|+++.+.+|++-+..|.+.-+-+|+.. +.+|.+=+...++ +|++|+-
T Consensus 152 ~~~VNIiG~~~g~~~~~~Dl~ElkrlL~~~Gi~vn~v~~~Gtsv~di~~-l~~A~~nIv~~~~-~a~~L~e 220 (468)
T TIGR02014 152 KPRVNIIGPTYGCFNMPSDLAEIRRLVEGIGAEVAHVYPLGSHLAEITK-LKNADANIVMYRE-FGRGLAE 220 (468)
T ss_pred CCeEEEECCCcCcCCChhHHHHHHHHHHHcCCcEEEEcCCcCCHHHHHh-hccCcEEEeecHH-HHHHHHH
Confidence 4467777731111 11233578999999999999999998888778866 5666664444554 7777653
No 287
>TIGR01319 glmL_fam conserved hypothetical protein. This small family includes, so far, an uncharacterized protein from E. coli O157:H7 and GlmL from Clostridium tetanomorphum and Clostridium cochlearium. GlmL is located between the genes for the two subunits, epsilon (GlmE) and sigma (GlmS), of the coenzyme-B12-dependent glutamate mutase (methylaspartate mutase), the first enzyme in a pathway of glutamate fermentation. Members shows significant sequence similarity to the hydantoinase branch of the hydantoinase/oxoprolinase family (pfam01968).
Probab=22.83 E-value=1.9e+02 Score=29.18 Aligned_cols=23 Identities=4% Similarity=-0.054 Sum_probs=9.9
Q ss_pred EEEEEecCCCccChHHHHHHHHHH
Q 016925 271 AIISVAQFRPEKAHPLQLEAFSVA 294 (380)
Q Consensus 271 ~il~VGRl~p~K~~d~li~A~~~l 294 (380)
.||..|-.+. -+-+.+++-...+
T Consensus 123 IILLaGGtDG-G~~e~~l~NA~~L 145 (463)
T TIGR01319 123 IILFAGGTDG-GEEECGIHNAKML 145 (463)
T ss_pred EEEEeCCcCC-CchHHHHHHHHHH
Confidence 4455554443 2334444444433
No 288
>PF01515 PTA_PTB: Phosphate acetyl/butaryl transferase; InterPro: IPR002505 This entry contains both phosphate acetyltransferase 2.3.1.8 from EC: Acetyl-CoA + phosphate = CoA + acetyl phosphate and phosphate butaryltransferase 2.3.1.19 from EC: Butanoyl-CoA + phosphate = CoA + butanoyl phosphate These enzymes catalyse the transfer of an acetyl or butaryl group to orthophosphate.; GO: 0016746 transferase activity, transferring acyl groups, 0008152 metabolic process; PDB: 2AF3_D 1QZT_D 2AF4_D 1VMI_A 3UF6_B 3U9E_A 3TNG_A 4E4R_A 1R5J_A 1YCO_A ....
Probab=22.76 E-value=3.3e+02 Score=26.07 Aligned_cols=38 Identities=24% Similarity=0.295 Sum_probs=25.3
Q ss_pred hHHHHHHHHHHHHHccCCCCCCeEEEEcCCCCCCCHHHHHHHHHHHHhcCCC
Q 016925 284 HPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVD 335 (380)
Q Consensus 284 ~d~li~A~~~l~~~~~~~~~~~~LvIvG~g~~~~~~~~~~~L~~la~~lgl~ 335 (380)
=+.+|+|...+.++ .=.+.+++|+ .+++++.++++|++
T Consensus 24 D~~vL~Aa~~~~~e-----gia~pILvG~---------~~~I~~~a~~~~l~ 61 (319)
T PF01515_consen 24 DERVLEAAKQAVEE-----GIAKPILVGD---------REEIREIAKELGLD 61 (319)
T ss_dssp SHHHHHHHHHHHHT-----TSCEEEEES----------HHHHHHHHHHTTC-
T ss_pred CHHHHHHHHHHHHc-----CceEEEEEeC---------hHHhcchhhhcccc
Confidence 35677888877765 2457788884 36778888877765
No 289
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=22.69 E-value=2.6e+02 Score=22.36 Aligned_cols=32 Identities=9% Similarity=-0.011 Sum_probs=23.0
Q ss_pred HHHHHHHhhccEEE-eechhhHHHHHHHHHhhc
Q 016925 347 RSVLTIFMHLFVFT-MKWQLVYDEFLKLYLQKS 378 (380)
Q Consensus 347 ~el~~ly~~a~vf~-~~~~~~~~~~~~~~~~~~ 378 (380)
+++.+++..+|+.+ .+..+...+.++.+++.-
T Consensus 59 ~~l~~~~~~~DVvIDfT~p~~~~~~~~~~~~~g 91 (124)
T PF01113_consen 59 DDLEELLEEADVVIDFTNPDAVYDNLEYALKHG 91 (124)
T ss_dssp S-HHHHTTH-SEEEEES-HHHHHHHHHHHHHHT
T ss_pred hhHHHhcccCCEEEEcCChHHhHHHHHHHHhCC
Confidence 46889999999977 577888888888887653
No 290
>PRK06756 flavodoxin; Provisional
Probab=22.65 E-value=1.5e+02 Score=24.40 Aligned_cols=36 Identities=14% Similarity=0.153 Sum_probs=27.6
Q ss_pred CcEEEEECCCCCCCCChhHHHHHHHHHHHHhCCCceEEEE
Q 016925 34 TTSVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIVY 73 (380)
Q Consensus 34 ~~~I~~~~p~~~~~GG~ervl~~la~~L~~~g~~~~v~v~ 73 (380)
+|+|+++.-+. .|..|.++..+++.|.+.| +++.++
T Consensus 1 mmkv~IiY~S~--tGnTe~vA~~ia~~l~~~g--~~v~~~ 36 (148)
T PRK06756 1 MSKLVMIFASM--SGNTEEMADHIAGVIRETE--NEIEVI 36 (148)
T ss_pred CceEEEEEECC--CchHHHHHHHHHHHHhhcC--CeEEEe
Confidence 36788777654 5899999999999998877 555554
No 291
>PRK11914 diacylglycerol kinase; Reviewed
Probab=22.61 E-value=2e+02 Score=27.06 Aligned_cols=43 Identities=16% Similarity=0.280 Sum_probs=27.3
Q ss_pred hcCCCCcEEEEEC-CCCCCCCChhHHHHHHHHHHHHhCCCceEEEEc
Q 016925 29 ARRNRTTSVAFFH-PNTNDGGGGERVLWCAVKAIQEESPDLDCIVYT 74 (380)
Q Consensus 29 ~~~~~~~~I~~~~-p~~~~~GG~ervl~~la~~L~~~g~~~~v~v~t 74 (380)
.||-.++++.++. |..+ .|.+.+...++.+.|.+.| +++.++.
T Consensus 3 ~~~~~~~~~~iI~NP~sG-~g~~~~~~~~~~~~l~~~g--~~~~~~~ 46 (306)
T PRK11914 3 LRRHEIGKVTVLTNPLSG-HGAAPHAAERAIARLHHRG--VDVVEIV 46 (306)
T ss_pred cCcCCCceEEEEECCCCC-CCcHHHHHHHHHHHHHHcC--CeEEEEE
Confidence 4778888888655 5442 2334566667788898888 4544443
No 292
>cd01973 Nitrogenase_VFe_beta_like Nitrogenase_VFe_beta -like: Nitrogenase VFe protein, beta subunit like. This group contains proteins similar to the beta subunits of the VFe protein of the vanadium-dependent (V-) nitrogenase. Nitrogenase catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. In addition to V-nitrogenase there is a molybdenum (Mo)-dependent nitrogenase and an iron only (Fe-) nitrogenase. The Mo-nitrogenase is the most widespread and best characterized of these systems. These systems consist of component 1 (VFe protein, FeFe protein or, MoFe protein respectively) and, component 2 (Fe protein). MoFe is an alpha2beta2 tetramer, V-and Fe- nitrogenases are alpha2beta2delta2 hexamers. The alpha and beta subunits of VFe and FeFe are similar to the alpha and beta subunits of MoFe. For MoFe each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe p
Probab=22.60 E-value=3.7e+02 Score=27.09 Aligned_cols=56 Identities=14% Similarity=0.153 Sum_probs=36.9
Q ss_pred CCccChHHHHHHHHH-HHHHccCCCCCCeEEEEcCCCCCCCHHHHHHHHHHHHhcCCCCcEEE
Q 016925 279 RPEKAHPLQLEAFSV-ALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEF 340 (380)
Q Consensus 279 ~p~K~~d~li~A~~~-l~~~~~~~~~~~~LvIvG~g~~~~~~~~~~~L~~la~~lgl~~~V~f 340 (380)
+...|++.+++|+-. +.+. ..++-++-|+|+.. +..-.++|+++.+++|++-++.|
T Consensus 139 s~~~G~~~a~~ali~~~~~~---~~~~~~VNii~~~~---~~~D~~ei~~lL~~~Gl~v~~~~ 195 (454)
T cd01973 139 SMVTGYDEAVRSVVKTIAKK---GAPSGKLNVFTGWV---NPGDVVELKHYLSEMDVEANILM 195 (454)
T ss_pred CHHHHHHHHHHHHHHHhccc---CCCCCcEEEECCCC---ChHHHHHHHHHHHHcCCCEEEee
Confidence 455789888888864 3222 12445677777532 22336899999999999977664
No 293
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=22.53 E-value=1.6e+02 Score=22.33 Aligned_cols=68 Identities=22% Similarity=0.172 Sum_probs=44.5
Q ss_pred ccChHHHHHHHHHHHHHccCCCCCCeEEEEcCCCCCCCHHHHHHHHHHHHh-cCCCCcEEEccCCCH-HHHHHHHhhccE
Q 016925 281 EKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIE-LKVDGNVEFYKNLLY-RSVLTIFMHLFV 358 (380)
Q Consensus 281 ~K~~d~li~A~~~l~~~~~~~~~~~~LvIvG~g~~~~~~~~~~~L~~la~~-lgl~~~V~f~G~v~~-~el~~ly~~a~v 358 (380)
++.+..+++||..+-++ -|+|.- + .++|+.+.++ +| +. ++. +++.++++.+|.
T Consensus 4 E~ai~~l~~~F~~fd~~------------~~~g~i--~---~~ELk~ll~~elg--~~------ls~~~~v~~mi~~~D~ 58 (89)
T cd05022 4 EKAIETLVSNFHKASVK------------GGKESL--T---ASEFQELLTQQLP--HL------LKDVEGLEEKMKNLDV 58 (89)
T ss_pred HHHHHHHHHHHHHHhCC------------CCCCeE--C---HHHHHHHHHHHhh--hh------ccCHHHHHHHHHHhCC
Confidence 46677888888877430 112111 1 3678888777 54 11 334 789999988886
Q ss_pred EEeechhhHHHHHHHH
Q 016925 359 FTMKWQLVYDEFLKLY 374 (380)
Q Consensus 359 f~~~~~~~~~~~~~~~ 374 (380)
--..+..|.||+++.
T Consensus 59 -d~DG~I~F~EF~~l~ 73 (89)
T cd05022 59 -NQDSKLSFEEFWELI 73 (89)
T ss_pred -CCCCCCcHHHHHHHH
Confidence 456678899998764
No 294
>TIGR01860 VNFD nitrogenase vanadium-iron protein, alpha chain. This model represents the alpha chain of the vanadium-containing component of the vanadium-iron nitrogenase compound I. The complex also includes a second alpha chain, two beta chains and two delta chains. Compount I interacts with compound II also known as the iron-protein which transfers electrons to compound I where the catalysis occurs.
Probab=22.51 E-value=6.1e+02 Score=25.60 Aligned_cols=73 Identities=14% Similarity=0.123 Sum_probs=45.8
Q ss_pred cChHHHHHHH-HHHHHHc-cCCCCCCeEEEEcCCCCCCCHHHHHHHHHHHHhcCCCCcEEEccCCCHHHHHHHHhhccE
Q 016925 282 KAHPLQLEAF-SVALRKL-DADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRSVLTIFMHLFV 358 (380)
Q Consensus 282 K~~d~li~A~-~~l~~~~-~~~~~~~~LvIvG~g~~~~~~~~~~~L~~la~~lgl~~~V~f~G~v~~~el~~ly~~a~v 358 (380)
.|++.+.+++ ..+.... ++..++-.+-|+|+.....+ .++|+++.+++|++-...|.|..+-+|+.. +.+|.+
T Consensus 177 ~G~~~a~~~~~~~~v~~~~~~~~~~~~VNiiG~~~~~gd---~~el~~lL~~~Gi~v~~~~~g~~t~~ei~~-~~~A~l 251 (461)
T TIGR01860 177 KGHHVLNIGWINEKVGTLEPEITSEYTINVIGDYNIQGD---TQVLQKYWDKMGIQVIAHFTGNGTYDDLRC-MHRAQL 251 (461)
T ss_pred hHHHHHHHHHHHHHhcccCCCCCCCCcEEEECCCCCccc---HHHHHHHHHHcCCcEEEEeCCCCCHHHHHh-cccCcE
Confidence 4666666654 2222211 11123456777786433222 468999999999998888999888888766 455555
No 295
>COG3562 KpsS Capsule polysaccharide export protein [Cell envelope biogenesis, outer membrane]
Probab=22.50 E-value=2.9e+02 Score=26.78 Aligned_cols=51 Identities=12% Similarity=0.199 Sum_probs=41.4
Q ss_pred CCCeEEEEcCCCCCCCHHHHHHHHHHHHhcCCCCcEEEccCCCHHHHHHHHhhc
Q 016925 303 PRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRSVLTIFMHL 356 (380)
Q Consensus 303 ~~~~LvIvG~g~~~~~~~~~~~L~~la~~lgl~~~V~f~G~v~~~el~~ly~~a 356 (380)
-+.+|+|.=..-+.+..+|...+++++.++++.++|..+..++ ++-++..|
T Consensus 269 a~t~liikhHpmdrg~idy~~~i~~~~~q~~v~~RvlYvhd~~---lpvllr~a 319 (403)
T COG3562 269 AGTNLIIKHHPMDRGFIDYPRDIKRRFVQYEVKGRVLYVHDVP---LPVLLRHA 319 (403)
T ss_pred cccceEEEeccccccchhhHHHHHHHHHHhccCceEEEecCCC---chHHHHhc
Confidence 4788888887766666788899999999999999999887665 66666665
No 296
>COG4822 CbiK Cobalamin biosynthesis protein CbiK, Co2+ chelatase [Coenzyme metabolism]
Probab=22.40 E-value=5.9e+02 Score=23.09 Aligned_cols=88 Identities=14% Similarity=0.066 Sum_probs=55.5
Q ss_pred cChHHHHHHHHHHHHHccCCCCCCeEEEEcCCCCCCCHHHHHHHHHHHHhcCCCCcEE--EccCCCHHHHHHHHhhccE-
Q 016925 282 KAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVE--FYKNLLYRSVLTIFMHLFV- 358 (380)
Q Consensus 282 K~~d~li~A~~~l~~~~~~~~~~~~LvIvG~g~~~~~~~~~~~L~~la~~lgl~~~V~--f~G~v~~~el~~ly~~a~v- 358 (380)
..++.+++|++... ++.+.+-.+++.|.|.....-.++.-|.....+.|..+-+. .-|+..-+++.+++.+..+
T Consensus 118 ~DYe~~v~aik~~~---ppl~k~e~~vlmgHGt~h~s~~~YacLd~~~~~~~f~~v~v~~ve~yP~~d~vi~~l~~~~~~ 194 (265)
T COG4822 118 NDYEICVEAIKDQI---PPLNKDEILVLMGHGTDHHSNAAYACLDHVLDEYGFDNVFVAAVEGYPLVDTVIEYLRKNGIK 194 (265)
T ss_pred hhHHHHHHHHHHhc---CCcCcCeEEEEEecCCCccHHHHHHHHHHHHHhcCCCceEEEEecCCCcHHHHHHHHHHcCCc
Confidence 45666777766432 22335667888888766666666677777777777643222 3456666677777777765
Q ss_pred --EEeechhhHHHHHH
Q 016925 359 --FTMKWQLVYDEFLK 372 (380)
Q Consensus 359 --f~~~~~~~~~~~~~ 372 (380)
-+||.+.+=|+-.+
T Consensus 195 ~v~L~PlMlvAG~Ha~ 210 (265)
T COG4822 195 EVHLIPLMLVAGDHAK 210 (265)
T ss_pred eEEEeeeEEeechhhh
Confidence 66777766665444
No 297
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=22.30 E-value=93 Score=24.95 Aligned_cols=26 Identities=12% Similarity=0.120 Sum_probs=19.0
Q ss_pred ChhHHHHHHHHHHHHhCCCceEEEEcCC
Q 016925 49 GGERVLWCAVKAIQEESPDLDCIVYTGD 76 (380)
Q Consensus 49 G~ervl~~la~~L~~~g~~~~v~v~t~~ 76 (380)
|--.=.+.++.+|+++| |+|.+.|..
T Consensus 10 Ghv~P~lala~~L~~rG--h~V~~~~~~ 35 (139)
T PF03033_consen 10 GHVYPFLALARALRRRG--HEVRLATPP 35 (139)
T ss_dssp HHHHHHHHHHHHHHHTT---EEEEEETG
T ss_pred hHHHHHHHHHHHHhccC--CeEEEeecc
Confidence 43344789999999999 888877753
No 298
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=22.24 E-value=2.7e+02 Score=24.90 Aligned_cols=57 Identities=9% Similarity=-0.066 Sum_probs=44.3
Q ss_pred eEEEEcCCCCCCCHHHHHHHHHHHHhcCCCCcEEEccCCCHHHHHHHHhhccEEEeec
Q 016925 306 RLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRSVLTIFMHLFVFTMKW 363 (380)
Q Consensus 306 ~LvIvG~g~~~~~~~~~~~L~~la~~lgl~~~V~f~G~v~~~el~~ly~~a~vf~~~~ 363 (380)
-+.+-|+-+. -+.++..++-+.+++.|+.-.+.=-|+.+.+.+..++...|.+.+..
T Consensus 41 GVt~SGGEPl-lq~~fl~~l~~~~k~~gi~~~leTnG~~~~~~~~~l~~~~D~~l~Di 97 (213)
T PRK10076 41 GVTLSGGEVL-MQAEFATRFLQRLRLWGVSCAIETAGDAPASKLLPLAKLCDEVLFDL 97 (213)
T ss_pred EEEEeCchHH-cCHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHhcCEEEEee
Confidence 4666665442 45666778888899999988888899999889999999999987643
No 299
>COG1707 ACT domain-containing protein [General function prediction only]
Probab=22.19 E-value=2.2e+02 Score=24.57 Aligned_cols=59 Identities=15% Similarity=0.118 Sum_probs=38.1
Q ss_pred CccChHHHHHHHHHHHHHccCCCCCCeEEEEcCCCCCCCHHHHHHHHHHHHhcCCCCcEE---EccCCCHHHHHHH
Q 016925 280 PEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVE---FYKNLLYRSVLTI 352 (380)
Q Consensus 280 p~K~~d~li~A~~~l~~~~~~~~~~~~LvIvG~g~~~~~~~~~~~L~~la~~lgl~~~V~---f~G~v~~~el~~l 352 (380)
-+.++...++|.+.+. .---|+++|+-- .++..+..+++-++.|++ |. +.|.+| +++++
T Consensus 125 GEE~laEAVkAV~rLp-------Rv~iLVLAGslM---GGkIteaVk~lr~~hgI~--VISL~M~GSVp--dVADl 186 (218)
T COG1707 125 GEEELAEAVKAVARLP-------RVGILVLAGSLM---GGKITEAVKELREEHGIP--VISLNMFGSVP--DVADL 186 (218)
T ss_pred ChHHHHHHHHHHhccc-------cceeEEEecccc---cchHHHHHHHHHHhcCCe--EEEeccCCCCc--chhhe
Confidence 3566777777777662 123578888642 234567888888888876 43 678887 45443
No 300
>COG0716 FldA Flavodoxins [Energy production and conversion]
Probab=22.01 E-value=1.4e+02 Score=24.83 Aligned_cols=35 Identities=9% Similarity=0.155 Sum_probs=27.7
Q ss_pred CcEEEEECCCCCCCCChhHHHHHHHHHHHHhCCCceEEE
Q 016925 34 TTSVAFFHPNTNDGGGGERVLWCAVKAIQEESPDLDCIV 72 (380)
Q Consensus 34 ~~~I~~~~p~~~~~GG~ervl~~la~~L~~~g~~~~v~v 72 (380)
+|+|+++.-+. .|.+|.++-.+++.|...| +++.+
T Consensus 1 M~ki~Ivy~S~--tGnTe~vA~~i~~~l~~~~--~~~~~ 35 (151)
T COG0716 1 MMKILIVYGSR--TGNTEKVAEIIAEELGADG--FEVDI 35 (151)
T ss_pred CCeEEEEEEcC--CCcHHHHHHHHHHHhccCC--ceEEE
Confidence 47888887766 5899999999999998888 44433
No 301
>TIGR01283 nifE nitrogenase molybdenum-iron cofactor biosynthesis protein NifE. This protein is part of the NifEN complex involved in biosynthesis of the molybdenum-iron cofactor used by the homologous NifDK complex of nitrogenase. In a few species, the protein is found as a NifEN fusion protein.
Probab=22.01 E-value=4.7e+02 Score=26.26 Aligned_cols=88 Identities=10% Similarity=0.039 Sum_probs=53.0
Q ss_pred CccChHHHHHHHHHHHHHccC------CCCCCeEEEEcCCCCCCCHHHHHHHHHHHHhcCCCCcEEEccCCCHHHHHHHH
Q 016925 280 PEKAHPLQLEAFSVALRKLDA------DLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRSVLTIF 353 (380)
Q Consensus 280 p~K~~d~li~A~~~l~~~~~~------~~~~~~LvIvG~g~~~~~~~~~~~L~~la~~lgl~~~V~f~G~v~~~el~~ly 353 (380)
...|++.+++++........+ ...+-.+-|+|+.... .+ ..+|+++.+++|++-+..|.|.-+-+|+...-
T Consensus 167 ~~~G~~~a~~al~~~~~~~~~~~~~~~~~~~~~VNiiG~~~~~--~d-~~el~~lL~~~Gl~v~~~~~~~~s~eei~~~~ 243 (456)
T TIGR01283 167 KNLGNKLACDALLKHVIGTREPEPIPVGTTVHDINLIGEFNVA--GE-FWHVKPLLEKLGIRVLATITGDSRYAEVQTAH 243 (456)
T ss_pred hhHHHHHHHHHHHHHHhccCCcccccccCCCCcEEEEcCCCCc--cc-HHHHHHHHHHcCCeEEEEeCCCCcHHHHHhcc
Confidence 446788888777654322100 0114568888865322 22 36899999999999888999987766665443
Q ss_pred hhccE-EEe-e-chhhHHHHH
Q 016925 354 MHLFV-FTM-K-WQLVYDEFL 371 (380)
Q Consensus 354 ~~a~v-f~~-~-~~~~~~~~~ 371 (380)
+|.+ .++ + +.....++|
T Consensus 244 -~A~lniv~~~~~~~~~a~~L 263 (456)
T TIGR01283 244 -RAKLNMVQCSKSMINLARKM 263 (456)
T ss_pred -cCcEEEEECHhHHHHHHHHH
Confidence 3344 433 2 233455554
No 302
>TIGR02069 cyanophycinase cyanophycinase. This model describes both cytosolic and extracellular cyanophycinases. The former are part of a system in many Cyanobacteria and a few other species of generating and later utilizing a storage polymer for nitrogen, carbon, and energy, called cyanophycin. The latter are found in species such as Pseudomonas anguilliseptica that can use external cyanophycin. The polymer has a backbone of L-aspartic acid, with most Asp side chain carboxyl groups attached to L-arginine.
Probab=21.96 E-value=6.2e+02 Score=23.18 Aligned_cols=81 Identities=10% Similarity=-0.025 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHccCCCCCCeEEEEcCCCCCCCHHHHHHHHHHHHhcCCCCcEEEccC-----CCHHHHHHHHhhccEEE
Q 016925 286 LQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKN-----LLYRSVLTIFMHLFVFT 360 (380)
Q Consensus 286 ~li~A~~~l~~~~~~~~~~~~LvIvG~g~~~~~~~~~~~L~~la~~lgl~~~V~f~G~-----v~~~el~~ly~~a~vf~ 360 (380)
.+.+.|-.+.. .++.++.++...+. ...++.+...+.-+++|..+ |..+.- .++++..+.+..||+..
T Consensus 15 ~i~~~~~~lag-----~~~~rI~~iptAS~-~~~~~~~~~~~~~~~lG~~~-v~~l~i~~r~~a~~~~~~~~l~~ad~I~ 87 (250)
T TIGR02069 15 EILREFVSRAG-----GEDAIIVIITSASE-EPREVGERYITIFSRLGVKE-VKILDVREREDASDENAIALLSNATGIF 87 (250)
T ss_pred HHHHHHHHHhC-----CCCceEEEEeCCCC-ChHHHHHHHHHHHHHcCCce-eEEEecCChHHccCHHHHHHHhhCCEEE
Confidence 36666655532 36789888886543 33455667777778899853 333221 23456778899999998
Q ss_pred eechhhHHHHHHHH
Q 016925 361 MKWQLVYDEFLKLY 374 (380)
Q Consensus 361 ~~~~~~~~~~~~~~ 374 (380)
+....+| ++++.+
T Consensus 88 ~~GGnq~-~l~~~l 100 (250)
T TIGR02069 88 FTGGDQL-RITSLL 100 (250)
T ss_pred EeCCCHH-HHHHHH
Confidence 8888776 444433
No 303
>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=21.86 E-value=3.4e+02 Score=25.51 Aligned_cols=65 Identities=12% Similarity=0.100 Sum_probs=46.1
Q ss_pred CCCeEEEEcCCCCCCCHHHHHHHHHHHHhcCCCCcE-EEccCCCHHHHHHHHhhc--c-----EEEe-echhhHHH
Q 016925 303 PRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNV-EFYKNLLYRSVLTIFMHL--F-----VFTM-KWQLVYDE 369 (380)
Q Consensus 303 ~~~~LvIvG~g~~~~~~~~~~~L~~la~~lgl~~~V-~f~G~v~~~el~~ly~~a--~-----vf~~-~~~~~~~~ 369 (380)
|....+.+|+. +.+..|.+..++.++++|+.-.. .|...++.+|+.+.+... | ++++ |-.+++++
T Consensus 33 P~Laii~vg~d--~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~d~~V~GIlvqlPLP~~~~~ 106 (278)
T PRK14172 33 PKIASILVGND--GGSIYYMNNQEKVANSLGIDFKKIKLDESISEEDLINEIEELNKDNNVHGIMLQLPLPKHLDE 106 (278)
T ss_pred ceEEEEEeCCC--HHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEcCCCCCCCCH
Confidence 55666778865 45677889999999999998654 567788888888877765 1 2443 54556554
No 304
>PRK00207 sulfur transfer complex subunit TusD; Validated
Probab=21.81 E-value=1.9e+02 Score=23.56 Aligned_cols=33 Identities=12% Similarity=0.063 Sum_probs=24.9
Q ss_pred cEEEEECCCCCCCCChhHHHHHHHHHHHHhCCC
Q 016925 35 TSVAFFHPNTNDGGGGERVLWCAVKAIQEESPD 67 (380)
Q Consensus 35 ~~I~~~~p~~~~~GG~ervl~~la~~L~~~g~~ 67 (380)
|+++++......++-..+-.+++|.++.+.|++
T Consensus 1 m~~~iv~~~~Py~~~~~~~al~~A~aa~~~gh~ 33 (128)
T PRK00207 1 MRYAIAVTGPAYGTQQASSAYQFAQALLAEGHE 33 (128)
T ss_pred CEEEEEEcCCCCCCHHHHHHHHHHHHHHhCCCC
Confidence 678888766656555557788999999998844
No 305
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=21.71 E-value=2.3e+02 Score=21.80 Aligned_cols=40 Identities=13% Similarity=0.188 Sum_probs=25.9
Q ss_pred HHHHHHHHHhCCCceEEEEcCCCCCChhhHHHHHHhhcCcccc
Q 016925 55 WCAVKAIQEESPDLDCIVYTGDHDAFPDSLLARAVDRFGVELL 97 (380)
Q Consensus 55 ~~la~~L~~~g~~~~v~v~t~~~~~~~~~~~~~~~~~~g~~l~ 97 (380)
.+.++.|+++| ..+.++|......++++.+.+++ .|++++
T Consensus 20 ~e~l~~L~~~g--~~~~~lTNns~~s~~~~~~~L~~-~Gi~~~ 59 (101)
T PF13344_consen 20 VEALDALRERG--KPVVFLTNNSSRSREEYAKKLKK-LGIPVD 59 (101)
T ss_dssp HHHHHHHHHTT--SEEEEEES-SSS-HHHHHHHHHH-TTTT--
T ss_pred HHHHHHHHHcC--CCEEEEeCCCCCCHHHHHHHHHh-cCcCCC
Confidence 47888999988 88889987655455666666643 676543
No 306
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=21.56 E-value=4.7e+02 Score=23.47 Aligned_cols=53 Identities=9% Similarity=0.010 Sum_probs=43.3
Q ss_pred HHHHHHHHHhcCCCCcEEEccCCCHHHHHHHHhhccE-EEeechhhHHH--HHHHH
Q 016925 322 LQSLKDKSIELKVDGNVEFYKNLLYRSVLTIFMHLFV-FTMKWQLVYDE--FLKLY 374 (380)
Q Consensus 322 ~~~L~~la~~lgl~~~V~f~G~v~~~el~~ly~~a~v-f~~~~~~~~~~--~~~~~ 374 (380)
..+.-+.++++|..--+.+-...|-+.+..++...|. .+|...-.||- |+..-
T Consensus 95 ~~~~l~~ik~~g~k~GlalnP~Tp~~~i~~~l~~~D~vlvMtV~PGfgGq~fi~~~ 150 (220)
T PRK08883 95 VDRTLQLIKEHGCQAGVVLNPATPLHHLEYIMDKVDLILLMSVNPGFGGQSFIPHT 150 (220)
T ss_pred HHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHhCCeEEEEEecCCCCCceecHhH
Confidence 4567788899999988888888899999999999998 55888888886 65433
No 307
>PF11997 DUF3492: Domain of unknown function (DUF3492); InterPro: IPR022622 This domain is functionally uncharacterised and is found in bacteria, archaea and eukaryotes. It is typically between 259 to 282 amino acids in length. This region is found N-terminal PF00534 from PFAM. There are two conserved sequence motifs: GGVS and EHGIY.
Probab=21.44 E-value=1.7e+02 Score=27.26 Aligned_cols=55 Identities=11% Similarity=0.089 Sum_probs=32.5
Q ss_pred cEEEEECCC--CCCCCChhHHHHHHHHHHHHhCCCceEEEEcCCCCCChhhHHHHHHhhcCccccCCC
Q 016925 35 TSVAFFHPN--TNDGGGGERVLWCAVKAIQEESPDLDCIVYTGDHDAFPDSLLARAVDRFGVELLHPP 100 (380)
Q Consensus 35 ~~I~~~~p~--~~~~GG~ervl~~la~~L~~~g~~~~v~v~t~~~~~~~~~~~~~~~~~~g~~l~~~v 100 (380)
|+|+++.-. ....||+-.-+-+++++|.+.. +.|+.++...+ .+. .+.+++|+||
T Consensus 1 ~~V~ll~EGtYPyv~GGVSsW~~~LI~glpe~~--F~v~~i~a~~~-~~~--------~~~y~lP~NV 57 (268)
T PF11997_consen 1 MDVCLLTEGTYPYVRGGVSSWVHQLIRGLPEHE--FHVYAIGANPE-DYG--------EPRYELPENV 57 (268)
T ss_pred CeEEEEecCcCCCCCCchhHHHHHHHhcCCCce--EEEEEEeCCcc-ccC--------CCcccCCCCc
Confidence 678888522 2226899988999999985522 44444444321 110 1356788887
No 308
>PF08496 Peptidase_S49_N: Peptidase family S49 N-terminal; InterPro: IPR013703 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain is found to the N terminus of bacterial signal peptidases that belong to the MEROPS peptidase family S49 (protease IV family, clan SK) (see also IPR002142 from INTERPRO) [, ]. ; GO: 0004252 serine-type endopeptidase activity, 0005886 plasma membrane
Probab=21.31 E-value=1.4e+02 Score=25.46 Aligned_cols=32 Identities=22% Similarity=0.494 Sum_probs=25.2
Q ss_pred CchhHHHHHHHHHHHHHHHHHHhHhhhcCCCC
Q 016925 3 PYGILIWAVITAVLASILILASHVHNARRNRT 34 (380)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 34 (380)
-||+.+-=.+|.|+|.+++++.=+.-++|+++
T Consensus 6 ~yglFlaK~vTvVvaI~~vv~~I~~~~~k~k~ 37 (155)
T PF08496_consen 6 EYGLFLAKIVTVVVAILAVVGLIVAAAQKKKK 37 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC
Confidence 48888888899999988888877776666653
No 309
>cd01982 Chlide_reductase_Z Chlide_reductase_Z : Z subunit of chlorophyllide (chlide) reductase (BchZ). Chlide reductase participates in photosynthetic pigment synthesis playing a role in the conversion of chlorophylls(Chl) into bacteriochlorophylls (BChl). Chlide reductase catalyzes the reduction of the B-ring of the tetrapyrolle. Chlide reductase is a three subunit enzyme (subunits are designated BchX, BchY and BchZ). The similarity between these three subunits and the subunits for nitrogenase suggests that BchX serves as an electron donor for the BchY-BchY catalytic subunits.
Probab=21.23 E-value=4.9e+02 Score=25.96 Aligned_cols=66 Identities=11% Similarity=0.019 Sum_probs=45.4
Q ss_pred CeEEEEcCCCCCC-CHHHHHHHHHHHHhcCCCCcEEEccCCCHHHHHHHHhhccE-EEeechhhHHHHHHH
Q 016925 305 PRLQFVGSCRNKS-DEERLQSLKDKSIELKVDGNVEFYKNLLYRSVLTIFMHLFV-FTMKWQLVYDEFLKL 373 (380)
Q Consensus 305 ~~LvIvG~g~~~~-~~~~~~~L~~la~~lgl~~~V~f~G~v~~~el~~ly~~a~v-f~~~~~~~~~~~~~~ 373 (380)
-++=|+|...... ...-.++|+++.+++|++-+..|.+..+-+|+..+-+ |++ +++ +..+|+.|+-
T Consensus 156 ~~VNIIG~~~g~~~~~gDl~ElkrLLe~~Gl~vn~v~~~gt~l~eI~~l~~-A~lniv~--~~~~g~~L~e 223 (412)
T cd01982 156 GTVNIIGPSYGCFNSPSDLAEVKRLVTGIGAEVNHVYPFESHLAEIPKLKN-AAVNVVM--YREFGRGLAE 223 (412)
T ss_pred CeEEEECCCcCcCCCHHHHHHHHHHHHHcCCcEEEECCCCCCHHHHHhhcc-CCEEEEe--CHHHHHHHHH
Confidence 4577887311111 1233579999999999999999999888888877555 555 444 3348887764
No 310
>TIGR03457 sulphoacet_xsc sulfoacetaldehyde acetyltransferase. Members of this protein family are sulfoacetaldehyde acetyltransferase, an enzyme of taurine utilization. Taurine, or 2-aminoethanesulfonate, can be used by bacteria as a source of carbon, nitrogen, and sulfur.
Probab=21.20 E-value=3.8e+02 Score=27.81 Aligned_cols=56 Identities=9% Similarity=0.029 Sum_probs=37.1
Q ss_pred CCeEEEEcCCCCCCCHHHHHHHHHHHHhcCCC-------------CcEEEccCC---CHHHHHHHHhhccEEEe
Q 016925 304 RPRLQFVGSCRNKSDEERLQSLKDKSIELKVD-------------GNVEFYKNL---LYRSVLTIFMHLFVFTM 361 (380)
Q Consensus 304 ~~~LvIvG~g~~~~~~~~~~~L~~la~~lgl~-------------~~V~f~G~v---~~~el~~ly~~a~vf~~ 361 (380)
.-.++++|.|-... +..++|+++++++|++ ++=.+.|.+ .......+++.||+.+.
T Consensus 197 ~rP~i~~G~g~~~~--~a~~~l~~lae~~~~PV~tt~~gkg~~p~~hp~~~G~~g~~g~~~~~~~l~~aDlil~ 268 (579)
T TIGR03457 197 KFPVIISGGGVVMG--DAVEECKALAERLGAPVVNSYLHNDSFPASHPLWVGPLGYQGSKAAMKLISDADVVLA 268 (579)
T ss_pred CCCEEEECcCcccc--ChHHHHHHHHHHhCCCEEEcccccccCCCCCchhccCCcCcchHHHHHHHHhCCEEEE
Confidence 45689999874322 2357899999999987 222344422 23456678999999665
No 311
>COG0519 GuaA GMP synthase, PP-ATPase domain/subunit [Nucleotide transport and metabolism]
Probab=20.97 E-value=1.2e+02 Score=28.40 Aligned_cols=37 Identities=11% Similarity=0.103 Sum_probs=29.0
Q ss_pred HHHHHHHHHHhcCCCCc-------------EEEccCCCHHHHHHHHhhccE
Q 016925 321 RLQSLKDKSIELKVDGN-------------VEFYKNLLYRSVLTIFMHLFV 358 (380)
Q Consensus 321 ~~~~L~~la~~lgl~~~-------------V~f~G~v~~~el~~ly~~a~v 358 (380)
|.++.+++.++|||++. |..+|.++.+.+ ++++.||.
T Consensus 170 fKDEVR~lg~~LGlp~~iv~RhPFPGPGLaiRilGevt~Ekl-~ilR~Ad~ 219 (315)
T COG0519 170 FKDEVRELGRELGLPEEIVYRHPFPGPGLAVRILGEVTREKL-EILREADA 219 (315)
T ss_pred hHHHHHHHHHHhCCCHHHhccCCCCCCCeEEEeecccCHHHH-HHHHHHhH
Confidence 45789999999999976 778888986544 77777776
No 312
>PLN02476 O-methyltransferase
Probab=20.96 E-value=3.7e+02 Score=25.19 Aligned_cols=60 Identities=17% Similarity=0.139 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHhcCCCCcEEEc-cCCCHHHHHHHHh-----hccE-EEeechhhHHHHHHHHHhhcc
Q 016925 319 EERLQSLKDKSIELKVDGNVEFY-KNLLYRSVLTIFM-----HLFV-FTMKWQLVYDEFLKLYLQKSK 379 (380)
Q Consensus 319 ~~~~~~L~~la~~lgl~~~V~f~-G~v~~~el~~ly~-----~a~v-f~~~~~~~~~~~~~~~~~~~~ 379 (380)
.+..+.-++..++.|++++|.+. |.. .+.|+++.. .-|+ |+=.+...+-+|+++.++.-+
T Consensus 153 ~e~~~~Ar~n~~~aGl~~~I~li~GdA-~e~L~~l~~~~~~~~FD~VFIDa~K~~Y~~y~e~~l~lL~ 219 (278)
T PLN02476 153 SNSLEVAKRYYELAGVSHKVNVKHGLA-AESLKSMIQNGEGSSYDFAFVDADKRMYQDYFELLLQLVR 219 (278)
T ss_pred HHHHHHHHHHHHHcCCCCcEEEEEcCH-HHHHHHHHhcccCCCCCEEEECCCHHHHHHHHHHHHHhcC
Confidence 45567777888889999999875 443 345556542 3455 555888889999988877543
No 313
>PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=20.79 E-value=2.4e+02 Score=26.62 Aligned_cols=52 Identities=13% Similarity=0.216 Sum_probs=40.4
Q ss_pred CCCeEEEEcCCCCCCCHHHHHHHHHHHHhcCCCCcE-EEccCCCHHHHHHHHhhc
Q 016925 303 PRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNV-EFYKNLLYRSVLTIFMHL 356 (380)
Q Consensus 303 ~~~~LvIvG~g~~~~~~~~~~~L~~la~~lgl~~~V-~f~G~v~~~el~~ly~~a 356 (380)
|..-.+.+|+. +.+..|.+.-++.++++|+.-.. .|...++.+|+.+.+...
T Consensus 27 P~LaiI~vg~d--~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~t~~el~~~I~~l 79 (287)
T PRK14181 27 PGLAVVLIGND--PASEVYVGMKVKKATDLGMVSKAHRLPSDATLSDILKLIHRL 79 (287)
T ss_pred CcEEEEEeCCC--HHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 66667777865 45678999999999999998644 566678888888887655
No 314
>TIGR03393 indolpyr_decarb indolepyruvate decarboxylase, Erwinia family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. Within the larger family, this model represents a clade of bacterial indolepyruvate decarboxylases, part of a pathway for biosynthesis of the plant hormone indole-3-acetic acid. Typically, these species interact with plants, as pathogens or as beneficial, root-associated bacteria.
Probab=20.78 E-value=3e+02 Score=28.34 Aligned_cols=57 Identities=9% Similarity=-0.080 Sum_probs=38.6
Q ss_pred CeEEEEcCCCCCCCHHHHHHHHHHHHhcCCC-------------CcEEEccC----CCHHHHHHHHhhccEEEeec
Q 016925 305 PRLQFVGSCRNKSDEERLQSLKDKSIELKVD-------------GNVEFYKN----LLYRSVLTIFMHLFVFTMKW 363 (380)
Q Consensus 305 ~~LvIvG~g~~~~~~~~~~~L~~la~~lgl~-------------~~V~f~G~----v~~~el~~ly~~a~vf~~~~ 363 (380)
-.++++|.|-... .-.+++.+++++++++ ++-.++|. -......++++.||+.+.-.
T Consensus 207 rPvil~G~g~~~~--~a~~~l~~lae~~~~pv~tt~~gkg~~~~~hpl~lG~~~g~~~~~~~~~~~~~aDlvl~lG 280 (539)
T TIGR03393 207 RVSLLADFLALRH--GLKHALQKWVKEVPMPHATLLMGKGILDEQQAGFYGTYSGSASTGAVKEAIEGADAVICVG 280 (539)
T ss_pred CCEEEeChhhccc--ChHHHHHHHHHHhCCCEEECcccCccccCcCCCeEEEEeCCCCCHHHHHHHhhCCEEEEEC
Confidence 3588899874322 2357899999999987 33334542 24446778999999977643
No 315
>COG2102 Predicted ATPases of PP-loop superfamily [General function prediction only]
Probab=20.39 E-value=6e+02 Score=23.02 Aligned_cols=73 Identities=11% Similarity=0.007 Sum_probs=48.4
Q ss_pred EEEEEecCCCccChHHHHHHHHHHHHHccCCCCCCeEEEEcCCCCCCCHHHHHHHHHHHHhcCCCCcEEEccCCCHHHHH
Q 016925 271 AIISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRSVL 350 (380)
Q Consensus 271 ~il~VGRl~p~K~~d~li~A~~~l~~~~~~~~~~~~LvIvG~g~~~~~~~~~~~L~~la~~lgl~~~V~f~G~v~~~el~ 350 (380)
++....+-+.++.++.+-+++..+ ++.-+++|+- .+....+.++++|+++|+...-=+-| .+++++.
T Consensus 62 l~~~~~~g~~e~eve~L~~~l~~l---------~~d~iv~GaI---~s~yqk~rve~lc~~lGl~~~~PLWg-~d~~ell 128 (223)
T COG2102 62 LVTFDTSGEEEREVEELKEALRRL---------KVDGIVAGAI---ASEYQKERVERLCEELGLKVYAPLWG-RDPEELL 128 (223)
T ss_pred eEEEecCccchhhHHHHHHHHHhC---------cccEEEEchh---hhHHHHHHHHHHHHHhCCEEeecccC-CCHHHHH
Confidence 333333336778888888888876 3677899975 34455689999999999963333344 4566666
Q ss_pred HHHhhc
Q 016925 351 TIFMHL 356 (380)
Q Consensus 351 ~ly~~a 356 (380)
+.+..+
T Consensus 129 ~e~~~~ 134 (223)
T COG2102 129 EEMVEA 134 (223)
T ss_pred HHHHHc
Confidence 555554
No 316
>TIGR00333 nrdI ribonucleoside-diphosphate reductase 2, operon protein nrdI. Ribonucleotide reductases (RNRs) are enzymes that provide the precursors of DNA synthesis. The three characterized classes of RNRs differ by their metal cofactor and their stable organic radical. The exact function of nrdI within the ribonucleotide reductases has not yet been fully characterised.
Probab=20.16 E-value=4.8e+02 Score=21.20 Aligned_cols=52 Identities=12% Similarity=-0.162 Sum_probs=40.0
Q ss_pred CCeEEEEcCCCCCCCHHHHHHHHHHHHhcCCCCcEEEccCCCHHHHHHHHhh
Q 016925 304 RPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRSVLTIFMH 355 (380)
Q Consensus 304 ~~~LvIvG~g~~~~~~~~~~~L~~la~~lgl~~~V~f~G~v~~~el~~ly~~ 355 (380)
+...-++|+|.......|-..-.+++++++++.-..|-...+.+|+..+|..
T Consensus 63 n~~~gV~gSGn~n~g~~fc~A~d~ia~~~~~p~l~k~El~gt~~Dv~~~~~~ 114 (125)
T TIGR00333 63 NLLRGVAASGNKVWGDNFALAGDVISRKLNVPLLYKFELSGTKNDVELFTQE 114 (125)
T ss_pred hcEEEEEEcCCCchHHHHHHHHHHHHHHhCCccEEEEecCCCHHHHHHHHHH
Confidence 4677888988543335566788999999999988888888778898876654
No 317
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=20.15 E-value=5.7e+02 Score=27.18 Aligned_cols=80 Identities=15% Similarity=0.105 Sum_probs=56.4
Q ss_pred CEEEEEecCCCccChHHHHHHHHHHHHHccCCCCCCeEEEEcCCCCCCCHHHHHHHHHHHHhcCCC-CcEEEccCCCHHH
Q 016925 270 PAIISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVD-GNVEFYKNLLYRS 348 (380)
Q Consensus 270 ~~il~VGRl~p~K~~d~li~A~~~l~~~~~~~~~~~~LvIvG~g~~~~~~~~~~~L~~la~~lgl~-~~V~f~G~v~~~e 348 (380)
..++|..-=.=.|=-...++.|+.+.++. |+-.|++.-.+... + ..+++.++++|++ ++|+|..-...+|
T Consensus 758 d~vvf~~FNqLyKidP~~l~~W~~ILk~V----PnS~LwllrfPa~g---e--~rf~ty~~~~Gl~p~riifs~va~k~e 828 (966)
T KOG4626|consen 758 DAVVFCNFNQLYKIDPSTLQMWANILKRV----PNSVLWLLRFPAVG---E--QRFRTYAEQLGLEPDRIIFSPVAAKEE 828 (966)
T ss_pred CeEEEeechhhhcCCHHHHHHHHHHHHhC----CcceeEEEeccccc---h--HHHHHHHHHhCCCccceeeccccchHH
Confidence 34444332223566667899999999875 99999887754221 1 6789999999997 7888988776666
Q ss_pred HHHHHhhccE
Q 016925 349 VLTIFMHLFV 358 (380)
Q Consensus 349 l~~ly~~a~v 358 (380)
=..-++-||+
T Consensus 829 Hvrr~~LaDv 838 (966)
T KOG4626|consen 829 HVRRGQLADV 838 (966)
T ss_pred HHHhhhhhhh
Confidence 6666666666
No 318
>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase.
Probab=20.11 E-value=6.1e+02 Score=25.01 Aligned_cols=81 Identities=12% Similarity=0.008 Sum_probs=46.3
Q ss_pred CCEEEEEecCCCccChHHHHHHHHHHHHHccCCCCCCeEEEEcCCCCCCCHHHHHHHHHHHHhcCCCCcEEEccCCCHHH
Q 016925 269 YPAIISVAQFRPEKAHPLQLEAFSVALRKLDADLPRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRS 348 (380)
Q Consensus 269 ~~~il~VGRl~p~K~~d~li~A~~~l~~~~~~~~~~~~LvIvG~g~~~~~~~~~~~L~~la~~lgl~~~V~f~G~v~~~e 348 (380)
++.++-+|-....|+++.+.+++.. .+-.++++|.. .+.+.+.+++.+. .+.+... .++
T Consensus 332 ~~ii~I~Gg~~~~~d~~~~~~~l~~---------~~~~v~~~G~~--------~~~l~~~~~~~~~--~~~~~~~--~~~ 390 (433)
T TIGR01087 332 NPVILIVGGDDKGADFSPLAPAAAG---------KVKAVLAIGED--------AAKIAPLLKEAGL--SVYLVES--LEE 390 (433)
T ss_pred CCEEEEEcCCCCCCCHHHHHHHHHh---------hCCEEEEECCC--------HHHHHHHHHhCCC--cEEEeCC--HHH
Confidence 3577777777888888887765542 13356777753 1345555544332 3544443 334
Q ss_pred HHH-HHh---hccE-EEeechhhHHHH
Q 016925 349 VLT-IFM---HLFV-FTMKWQLVYDEF 370 (380)
Q Consensus 349 l~~-ly~---~a~v-f~~~~~~~~~~~ 370 (380)
..+ +.+ ..|+ ++++..-.||.|
T Consensus 391 a~~~~~~~~~~gdiVLlspa~as~d~f 417 (433)
T TIGR01087 391 AVQAAREVASPGDVVLLSPACASFDQF 417 (433)
T ss_pred HHHHHHHhcCCCCEEEECccchhhccc
Confidence 332 333 3354 566788888877
No 319
>PF04995 CcmD: Heme exporter protein D (CcmD); InterPro: IPR007078 The CcmD protein is part of a C-type cytochrome biogenesis operon []. The exact function of this protein is uncertain. It has been proposed that CcmC, CcmD and CcmE interact directly with each other, establishing a cytoplasm to periplasm haem delivery pathway for cytochrome c maturation []. This protein is found fused to CcmE in P52224 from SWISSPROT. These proteins contain a predicted transmembrane helix.; GO: 0006810 transport, 0016021 integral to membrane
Probab=20.09 E-value=1.7e+02 Score=19.18 Aligned_cols=18 Identities=17% Similarity=0.514 Sum_probs=10.6
Q ss_pred CchhHHHHHHHHHHHHHH
Q 016925 3 PYGILIWAVITAVLASIL 20 (380)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~ 20 (380)
.||.-+|+.-...++.++
T Consensus 2 gy~~yVW~sYg~t~~~l~ 19 (46)
T PF04995_consen 2 GYGFYVWSSYGVTALVLA 19 (46)
T ss_pred CcHHHHHHHHHHHHHHHH
Confidence 588888876444333333
No 320
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=20.07 E-value=4e+02 Score=24.46 Aligned_cols=72 Identities=10% Similarity=0.023 Sum_probs=45.7
Q ss_pred CCCeEEEEcCCCCCCCHHHHHHHHHHHHhcCCCCcEEEccCCCHHHHHHHHh------hccE-EEeechhhHHHHHHHHH
Q 016925 303 PRPRLQFVGSCRNKSDEERLQSLKDKSIELKVDGNVEFYKNLLYRSVLTIFM------HLFV-FTMKWQLVYDEFLKLYL 375 (380)
Q Consensus 303 ~~~~LvIvG~g~~~~~~~~~~~L~~la~~lgl~~~V~f~G~v~~~el~~ly~------~a~v-f~~~~~~~~~~~~~~~~ 375 (380)
++-+++-+-. +.++.+.-++..++.|+.++|.+.-.-..+-++.+.+ .-|+ |+=.+.+.+-+|+++.+
T Consensus 103 ~~g~v~tiE~-----~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~fD~iFiDadK~~Y~~y~~~~l 177 (247)
T PLN02589 103 EDGKILAMDI-----NRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHGTFDFIFVDADKDNYINYHKRLI 177 (247)
T ss_pred CCCEEEEEeC-----CHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCCcccEEEecCCHHHhHHHHHHHH
Confidence 4555544442 2344555677778889888998743333445666553 3444 55588999999998887
Q ss_pred hhcc
Q 016925 376 QKSK 379 (380)
Q Consensus 376 ~~~~ 379 (380)
+..+
T Consensus 178 ~ll~ 181 (247)
T PLN02589 178 DLVK 181 (247)
T ss_pred HhcC
Confidence 6543
Done!