Your job contains 1 sequence.
>016927
MRSQGKRLKFQMNLCASIDGIVNNLSVPFNKVKAKSAPYMAADLVSVGDSWLSFAIKKRL
IEPIAGAEDQDWFKCLSHKWKVYLRRNDAGEIDPRGKIWAAPYRWGTMVIAYKKSKFRKH
NLAPIEDWKDLWRPELAGRISMVNSPREVIGSVLKYMGASYNSNNIDLQVAGGKISVQQN
LALLANQARLFDSTHYLKAFGIGDVWVAVGWSSDVLPAVKRMSNVAVVVPKSGASLWADL
WAIPAASRLETKQIGGRVRGPSPLIHQWIEFCLQTARALPFKQEVIPGASPSALETTLVK
LPEELLKGKPSQDTNLIVGVPPAEILARCEFLEPLSEATLSDYEWLVADLQKPAPVLMKR
VQHYLSSLIQSFLAKATLKS
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 016927
(380 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2206194 - symbol:AT1G31410 species:3702 "Arabi... 1220 3.9e-124 1
TIGR_CMR|BA_1300 - symbol:BA_1300 "spermidine/putrescine ... 207 1.4e-14 1
UNIPROTKB|P31133 - symbol:potF "putrescine ABC transporte... 194 6.9e-13 1
TIGR_CMR|SO_1270 - symbol:SO_1270 "polyamine ABC transpor... 170 4.0e-10 1
TIGR_CMR|CPS_0103 - symbol:CPS_0103 "putrescine ABC trans... 167 9.0e-10 1
TIGR_CMR|CPS_4671 - symbol:CPS_4671 "putrescine ABC trans... 160 5.4e-09 1
UNIPROTKB|Q9KKJ4 - symbol:VCA1113 "Spermidine/putrescine ... 143 3.5e-08 2
TIGR_CMR|VC_A1113 - symbol:VC_A1113 "spermidine/putrescin... 143 3.5e-08 2
TIGR_CMR|SPO_3469 - symbol:SPO_3469 "putrescine ABC trans... 151 5.6e-08 1
UNIPROTKB|Q9KS37 - symbol:VC1424 "Spermidine/putrescine A... 140 9.0e-07 1
TIGR_CMR|VC_1424 - symbol:VC_1424 "spermidine/putrescine ... 140 9.0e-07 1
UNIPROTKB|P0AFK9 - symbol:potD "putrescine / spermidine A... 138 1.5e-06 1
UNIPROTKB|Q9KS36 - symbol:VC1425 "Spermidine/putrescine A... 130 1.3e-05 1
TIGR_CMR|VC_1425 - symbol:VC_1425 "spermidine/putrescine ... 130 1.3e-05 1
>TAIR|locus:2206194 [details] [associations]
symbol:AT1G31410 species:3702 "Arabidopsis thaliana"
[GO:0005215 "transporter activity" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM] [GO:0006810 "transport" evidence=IEA]
[GO:0009941 "chloroplast envelope" evidence=IDA] InterPro:IPR001188
PRINTS:PR00909 EMBL:CP002684 GO:GO:0009941 GO:GO:0042597
eggNOG:COG0687 GO:GO:0019808 GO:GO:0015846 EMBL:BT015412
IPI:IPI00520881 RefSeq:NP_174426.2 UniGene:At.40347
ProteinModelPortal:Q66GJ0 PaxDb:Q66GJ0 PRIDE:Q66GJ0
EnsemblPlants:AT1G31410.1 GeneID:840031 KEGG:ath:AT1G31410
TAIR:At1g31410 InParanoid:Q66GJ0 OMA:GTMVIAY PhylomeDB:Q66GJ0
ProtClustDB:CLSN2680340 Genevestigator:Q66GJ0 Uniprot:Q66GJ0
Length = 524
Score = 1220 (434.5 bits), Expect = 3.9e-124, P = 3.9e-124
Identities = 233/379 (61%), Positives = 289/379 (76%)
Query: 1 MRSQGKRLKFQMNLCASIDGIVNNLSVPFNKVKAKSAPYMAADLVSVGDSWLSFAIKKRL 60
M SQGKR++ + +++ I +LS P K +A AAD++S+GDSWLSFAIK++L
Sbjct: 137 MSSQGKRVRLKTQFRGNLEEIFFDLSKPSKNGKKGAASTAAADMISIGDSWLSFAIKEKL 196
Query: 61 IEPIAGAEDQDWFKCLSHKWKVYLRRNDAGEIDPRGKIWAAPYRWGTMVIAYKKSKFRKH 120
IEP+ G EDQDW+K LS KWK+YLRRN AGE P G+ WA PYRWGTMVIAYKKSKF+ +
Sbjct: 197 IEPMKGIEDQDWYKGLSDKWKIYLRRNYAGEKAPDGETWAVPYRWGTMVIAYKKSKFQNY 256
Query: 121 NLAPIEDWKDLWRPELAGRISMVNSPREVIGSVLKYMGASYNSNNIDLQVAGGKISVXXX 180
LAPIEDW DLWRPELAGRI+MVNSPREV+G+VLKYM ASYN+ ++D QV GG+++V
Sbjct: 257 KLAPIEDWADLWRPELAGRIAMVNSPREVVGAVLKYMRASYNTTDLDSQVPGGRLAVEKN 316
Query: 181 XXXXXXXXRLFDSTHYLKAFGIGDVWVAVGWSSDVLPAVKRMSNVAVVVPKSGASLWADL 240
RLFDS +YLKAF +GDVWV VGWSSDV+P KRMSNV V+VPKSGA+LWADL
Sbjct: 317 LASLMKQIRLFDSNNYLKAFNVGDVWVTVGWSSDVIPVAKRMSNVTVIVPKSGATLWADL 376
Query: 241 WAIPAASRL--ETKQIGGRVRGPSPLIHQWIEFCLQTARALPFKQEVIPGASPSALETTL 298
WAIPA S E +Q GGRVRGPSPLI+QWIEFCLQ AR+LPF +EVIPGASPSAL+ L
Sbjct: 377 WAIPAVSDSGKEAEQRGGRVRGPSPLINQWIEFCLQPARSLPFTREVIPGASPSALDGPL 436
Query: 299 VKLPEELLKGKPSQDTNLIVGVPPAEILARCEFLEPLSEATLSDYEWLVADLQKPA--PV 356
V PE+ K + DTNL+ GVPP EIL++CEFLEPL EATLS+Y L+ ++K + P
Sbjct: 437 VTEPEKTKKDRTKLDTNLVTGVPPPEILSKCEFLEPLPEATLSEYRLLIETVRKQSQRPG 496
Query: 357 LMKRVQHYLSSLIQSFLAK 375
L+++++ +S ++ F AK
Sbjct: 497 LVEKLKDIVSIKVRGFRAK 515
>TIGR_CMR|BA_1300 [details] [associations]
symbol:BA_1300 "spermidine/putrescine ABC transporter,
spermidine/putrescine-binding protein" species:198094 "Bacillus
anthracis str. Ames" [GO:0015417 "polyamine-transporting ATPase
activity" evidence=ISS] [GO:0015847 "putrescine transport"
evidence=ISS] [GO:0015848 "spermidine transport" evidence=ISS]
[GO:0042626 "ATPase activity, coupled to transmembrane movement of
substances" evidence=ISS] InterPro:IPR001188 PIRSF:PIRSF019574
PRINTS:PR00909 EMBL:AE016879 EMBL:AE017334 EMBL:AE017225
GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0042597 KO:K11069 GO:GO:0019808
HOGENOM:HOG000263814 GO:GO:0015846 RefSeq:NP_843768.1
RefSeq:YP_017915.1 RefSeq:YP_027472.1 HSSP:P23861
ProteinModelPortal:Q81TH5 IntAct:Q81TH5 DNASU:1085223
EnsemblBacteria:EBBACT00000008763 EnsemblBacteria:EBBACT00000013649
EnsemblBacteria:EBBACT00000023557 GeneID:1085223 GeneID:2815193
GeneID:2852748 KEGG:ban:BA_1300 KEGG:bar:GBAA_1300 KEGG:bat:BAS1202
OMA:LYSWADY ProtClustDB:CLSK916172
BioCyc:BANT260799:GJAJ-1277-MONOMER
BioCyc:BANT261594:GJ7F-1335-MONOMER Uniprot:Q81TH5
Length = 345
Score = 207 (77.9 bits), Expect = 1.4e-14, P = 1.4e-14
Identities = 53/156 (33%), Positives = 73/156 (46%)
Query: 93 DPRGKIWAAPYRWGTMVIAYKKSKFRKHNLAPIEDWKDLWRPELAGRISMVNSPREVIGS 152
DP K ++ Y WG IAY K K+ K AP W DLW + G ++++N REV+G
Sbjct: 117 DPENK-YSLVYTWGVTGIAYNK-KYVKE--APTS-WTDLWNEKYKGHVTLLNDSREVLGM 171
Query: 153 VLKYMGASYNSNNIDLQVAGGKISVXXXXXXXXXXXRLFDSTHYLKAFGIGDVWVAVGWS 212
LK G S NS D Q+ + FD+ + + F D W+ WS
Sbjct: 172 GLKKNGFS-NSTKDDAQLKTAATDLQKLLPNLLA----FDTDNIKQKFITEDAWIGTVWS 226
Query: 213 SDVLPAVKRMSNVAVVVPKSGASLWADLWAIPAASR 248
D K +V VVPK G ++WAD AIP ++
Sbjct: 227 GDAAFIAKDNKDVEYVVPKEGGTIWADTLAIPKGAK 262
>UNIPROTKB|P31133 [details] [associations]
symbol:potF "putrescine ABC transporter - periplasmic
binding protein" species:83333 "Escherichia coli K-12" [GO:0019808
"polyamine binding" evidence=IEA] [GO:0015847 "putrescine
transport" evidence=IDA] [GO:0015594 "putrescine-importing ATPase
activity" evidence=RCA;IMP] [GO:0043190 "ATP-binding cassette (ABC)
transporter complex" evidence=RCA] [GO:0042597 "periplasmic space"
evidence=IEA] InterPro:IPR001188 PIRSF:PIRSF019574 PRINTS:PR00909
EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR GO:GO:0042597 eggNOG:COG0687 GO:GO:0019808
GO:GO:0015594 EMBL:M93239 PIR:F64823 RefSeq:NP_415375.1
RefSeq:YP_489127.1 PDB:1A99 PDBsum:1A99 ProteinModelPortal:P31133
SMR:P31133 DIP:DIP-10531N IntAct:P31133 TCDB:3.A.1.11.2
SWISS-2DPAGE:P31133 PRIDE:P31133 EnsemblBacteria:EBESCT00000000165
EnsemblBacteria:EBESCT00000000166 EnsemblBacteria:EBESCT00000016488
GeneID:12931000 GeneID:945480 KEGG:ecj:Y75_p0827 KEGG:eco:b0854
PATRIC:32116913 EchoBASE:EB1586 EcoGene:EG11629
HOGENOM:HOG000263815 KO:K11073 OMA:HPAEAHA ProtClustDB:PRK10682
BioCyc:EcoCyc:POTF-MONOMER BioCyc:ECOL316407:JW0838-MONOMER
EvolutionaryTrace:P31133 Genevestigator:P31133 Uniprot:P31133
Length = 370
Score = 194 (73.4 bits), Expect = 6.9e-13, P = 6.9e-13
Identities = 61/219 (27%), Positives = 100/219 (45%)
Query: 43 DLVSVGDSWLSFAIKKRLIEPIAGAEDQDWFKCLSHKWKVYLRRNDAGEIDPRGKIWAAP 102
DLV S+L + + +P+ ++ +W K L + + ++D P K +A P
Sbjct: 80 DLVVPSASFLERQLTAGVFQPLDKSKLPEW-KNLDPELLKLVAKHD-----PDNK-FAMP 132
Query: 103 YRWGTMVIAYKKSKFRK--HNLAPIEDWKDLWRPELAGR-----ISMVNSPREVIGSVLK 155
Y W T I Y K + AP++ W + +PE + +S +++P EV +VL
Sbjct: 133 YMWATTGIGYNVDKVKAVLGENAPVDSWDLILKPENLEKLKSCGVSFLDAPEEVFATVLN 192
Query: 156 YMGASYNSNNIDLQVAGGKISVXXXXXXXXXXXRLFDSTHYLKAFGIGDVWVAVGWSSDV 215
Y+G NS D G + R F S+ Y+ GD+ VA+GW+ DV
Sbjct: 193 YLGKDPNSTKAD-DYTGPATDLLLKLRPNI---RYFHSSQYINDLANGDICVAIGWAGDV 248
Query: 216 LPAVKRMS------NVAVVVPKSGASLWADLWAIPAASR 248
A R NV+ +PK GA + D++A+PA ++
Sbjct: 249 WQASNRAKEAKNGVNVSFSIPKEGAMAFFDVFAMPADAK 287
>TIGR_CMR|SO_1270 [details] [associations]
symbol:SO_1270 "polyamine ABC transporter, periplasmic
polyamine-binding protein" species:211586 "Shewanella oneidensis
MR-1" [GO:0015417 "polyamine-transporting ATPase activity"
evidence=ISS] [GO:0015847 "putrescine transport" evidence=ISS]
[GO:0015848 "spermidine transport" evidence=ISS] [GO:0030288 "outer
membrane-bounded periplasmic space" evidence=ISS]
InterPro:IPR001188 PIRSF:PIRSF019574 PRINTS:PR00909 EMBL:AE014299
GenomeReviews:AE014299_GR GO:GO:0042597 GO:GO:0019808
HOGENOM:HOG000263815 KO:K11073 GO:GO:0015846 OMA:KRLEKND
ProtClustDB:CLSK906175 RefSeq:NP_716893.1 HSSP:P31133
ProteinModelPortal:Q8EHF3 SMR:Q8EHF3 GeneID:1169090
KEGG:son:SO_1270 PATRIC:23522186 Uniprot:Q8EHF3
Length = 367
Score = 170 (64.9 bits), Expect = 4.0e-10, P = 4.0e-10
Identities = 71/264 (26%), Positives = 116/264 (43%)
Query: 43 DLVSVGDSWLSFAIKKRLIEPIAGAEDQDWFKCLSHKWKVYLRRNDAGEIDPRGKIWAAP 102
D+V + +L+ IK +P+ ++ + FK L+ L + DP G +A P
Sbjct: 77 DIVVPSNHFLAKQIKAGAFKPLDRSKLTN-FKNLNADLMKLLEK-----ADP-GNQYAVP 129
Query: 103 YRWGTMVIAYKKSKFRK---HNLAPIEDWKDLWRPELAGRIS-----MVNSPREVIGSVL 154
Y WGT I Y +K + + P + ++ P+ A +IS M++S +++ +
Sbjct: 130 YLWGTNGIGYNINKVKAAVGEDAPPFNSMELIFNPKYAEKISKCGFAMLDSADDMVPQAM 189
Query: 155 KYMGASYNSNNI-DLQVAGGKISVXXXXXXXXXXXRLFDSTHYLKAFGIGDVWVAVGWSS 213
Y+G NS D + AG + F S+ Y+ GD+ VA G+S
Sbjct: 190 IYLGLDPNSTKAEDYEKAGELLEKIRPYVTY------FHSSRYISDLANGDICVAYGFSG 243
Query: 214 DVLPAVKRM------SNVAVVVPKSGASLWADLWAIPA-ASRLET--KQIGGRVRGPSPL 264
DV A R + + +PK GA+LW D+ AIPA A+ +E K I +R P +
Sbjct: 244 DVFQAAARADEAGNGNKIGYSIPKEGANLWFDMLAIPADATNVENAHKLINYLLR-PEVI 302
Query: 265 --IHQWIEFCLQTARALPFKQEVI 286
I ++ + A P E I
Sbjct: 303 APISNYVAYANPNDLAQPLVDEAI 326
>TIGR_CMR|CPS_0103 [details] [associations]
symbol:CPS_0103 "putrescine ABC transporter, periplasmic
putrescine-binding protein" species:167879 "Colwellia
psychrerythraea 34H" [GO:0015594 "putrescine-importing ATPase
activity" evidence=ISS] [GO:0015847 "putrescine transport"
evidence=ISS] InterPro:IPR001188 PIRSF:PIRSF019574 PRINTS:PR00909
EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0042597
eggNOG:COG0687 GO:GO:0019808 HOGENOM:HOG000263815 KO:K11073
GO:GO:0015846 RefSeq:YP_266871.1 ProteinModelPortal:Q48AP2
SMR:Q48AP2 STRING:Q48AP2 GeneID:3518986 KEGG:cps:CPS_0103
PATRIC:21463621 OMA:KRLEKND ProtClustDB:CLSK906175
BioCyc:CPSY167879:GI48-206-MONOMER Uniprot:Q48AP2
Length = 369
Score = 167 (63.8 bits), Expect = 9.0e-10, P = 9.0e-10
Identities = 52/165 (31%), Positives = 81/165 (49%)
Query: 93 DPRGKIWAAPYRWGTMVIAYKKSKFRKH--NLAPIEDWKDLWRPELA---GR--ISMVNS 145
DP G A PY WGT I Y ++ + + AP + + ++ P+ A G+ +++++S
Sbjct: 124 DP-GNQHAVPYLWGTNGIGYNVAQVKAALGDDAPTDSLELIFNPKYAEKLGKCGLAVLDS 182
Query: 146 PREVIGSVLKYMGASYNSNNIDLQVAGGKISVXXXXXXXXXXXRLFDSTHYLKAFGIGDV 205
P E+I L Y+G + NS+ A GK+ F S+ Y+ GD+
Sbjct: 183 PDEMIPQALLYLGLNPNSHKASDYKAAGKLLAEIRPHITY-----FHSSRYITDLANGDI 237
Query: 206 WVAVGWSSDVLPAVKRMS---NVAVV---VPKSGASLWADLWAIP 244
VA G+S DV A R N ++ +PK GA+LW D+ AIP
Sbjct: 238 CVAYGFSGDVFQAKARAEEAGNGHIIEYKIPKEGANLWFDMLAIP 282
>TIGR_CMR|CPS_4671 [details] [associations]
symbol:CPS_4671 "putrescine ABC transporter, periplasmic
putrescine-binding protein" species:167879 "Colwellia
psychrerythraea 34H" [GO:0015594 "putrescine-importing ATPase
activity" evidence=ISS] [GO:0015847 "putrescine transport"
evidence=ISS] InterPro:IPR001188 PIRSF:PIRSF019574 PRINTS:PR00909
EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0042597
eggNOG:COG0687 GO:GO:0019808 HOGENOM:HOG000263815 KO:K11073
GO:GO:0015846 RefSeq:YP_271315.1 ProteinModelPortal:Q47V57
SMR:Q47V57 STRING:Q47V57 GeneID:3521843 KEGG:cps:CPS_4671
PATRIC:21472163 OMA:NTNFIHY ProtClustDB:CLSK938295
BioCyc:CPSY167879:GI48-4677-MONOMER Uniprot:Q47V57
Length = 361
Score = 160 (61.4 bits), Expect = 5.4e-09, P = 5.4e-09
Identities = 51/166 (30%), Positives = 78/166 (46%)
Query: 93 DPRGKIWAAPYRWGTMVIAYKKSKFRKHNLAPIE-DWKDL-WRPELAGR-----ISMVNS 145
DP K + PY WGT+ + K L +E + DL ++PE+A + I +++S
Sbjct: 117 DPGNK-HSVPYTWGTIGLGINTDMV-KARLGDVELNSLDLIFKPEVAAKLADCGIGILDS 174
Query: 146 PREVIGSVLKYMGASYNSNNIDLQVAGGKISVXXXXXXXXXXXRLFDSTHYLKAFGIGDV 205
P EV+ L Y G NS + D + K + + FDS+ + GD+
Sbjct: 175 PAEVMSIALNYAGLDPNSES-DKDLKATKAMIKKARPHY----KYFDSSRLIADLANGDI 229
Query: 206 WVAVGWSSDVLPAVKRMSN------VAVVVPKSGASLWADLWAIPA 245
VA+G++ D+L A R S V ++PK G W D+ AIPA
Sbjct: 230 CVALGYNGDMLQANSRASEAGQGVKVEYLIPKEGTIAWFDMMAIPA 275
>UNIPROTKB|Q9KKJ4 [details] [associations]
symbol:VCA1113 "Spermidine/putrescine ABC transporter,
periplasmic spermidine/putrescine-binding protein" species:243277
"Vibrio cholerae O1 biovar El Tor str. N16961" [GO:0015417
"polyamine-transporting ATPase activity" evidence=ISS] [GO:0015847
"putrescine transport" evidence=ISS] [GO:0015848 "spermidine
transport" evidence=ISS] InterPro:IPR001188 PIRSF:PIRSF019574
PRINTS:PR00909 GenomeReviews:AE003853_GR GO:GO:0042597
GO:GO:0019808 GO:GO:0015417 GO:GO:0015847 GO:GO:0015848 KO:K02055
HSSP:P23861 EMBL:AE004436 PIR:B82377 RefSeq:NP_233492.1
ProteinModelPortal:Q9KKJ4 DNASU:2612172 GeneID:2612172
KEGG:vch:VCA1113 PATRIC:20086744 OMA:TIHYANA ProtClustDB:CLSK789277
Uniprot:Q9KKJ4
Length = 343
Score = 143 (55.4 bits), Expect = 3.5e-08, Sum P(2) = 3.5e-08
Identities = 39/156 (25%), Positives = 68/156 (43%)
Query: 93 DPRGKIWAAPYRWGTMVIAYKKSKFRKHNLAPIEDWKDLWRPELAGRISMVNSPREVIGS 152
DP+ K ++ PY WG + Y S I W DLW + ++ +++ R+V G
Sbjct: 116 DPQNK-FSLPYIWGITGLYYNSSTLPNG----ITKWADLWDKQYEQQVMLIDDIRDVFGM 170
Query: 153 VLKYMGASYNSNNIDLQVAGGKISVXXXXXXXXXXXRLFDSTHYLKAFGIGDVWVAVGWS 212
LK G S N+ N + ++ S+ D+ H + G+ + + W+
Sbjct: 171 ALKLNGFSINTKNEE-EIKKAYESLVALKKNVLLYNS--DAPHV--PYVSGEATLGMQWN 225
Query: 213 SDVLPAVKRMSNVAVVVPKSGASLWADLWAIPAASR 248
+ M + V+P+ GA LW D + IP+ S+
Sbjct: 226 GNAYQGQVEMPELKFVMPEEGAVLWMDNFTIPSGSK 261
Score = 49 (22.3 bits), Expect = 3.5e-08, Sum P(2) = 3.5e-08
Identities = 24/82 (29%), Positives = 35/82 (42%)
Query: 263 PLIHQWIEFCLQTARALPFKQEVIPGASPSALETTLVKLPEELLKGKPSQDTNLIVGVPP 322
PL H++I F Q Q + G + SA + LP EL +D I P
Sbjct: 264 PLAHKFINFMYQPENQAEIVQSL--GYA-SATKGGRALLPAEL------RDNPTIF--PS 312
Query: 323 AEILARCEFLEPLSEATLSDYE 344
E + + EF+ + TL+ YE
Sbjct: 313 DEDMKKGEFINDVGPETLAIYE 334
>TIGR_CMR|VC_A1113 [details] [associations]
symbol:VC_A1113 "spermidine/putrescine ABC transporter,
periplasmic spermidine/putrescine-binding protein" species:686
"Vibrio cholerae O1 biovar El Tor" [GO:0015417
"polyamine-transporting ATPase activity" evidence=ISS] [GO:0015847
"putrescine transport" evidence=ISS] [GO:0015848 "spermidine
transport" evidence=ISS] InterPro:IPR001188 PIRSF:PIRSF019574
PRINTS:PR00909 GenomeReviews:AE003853_GR GO:GO:0042597
GO:GO:0019808 GO:GO:0015417 GO:GO:0015847 GO:GO:0015848 KO:K02055
HSSP:P23861 EMBL:AE004436 PIR:B82377 RefSeq:NP_233492.1
ProteinModelPortal:Q9KKJ4 DNASU:2612172 GeneID:2612172
KEGG:vch:VCA1113 PATRIC:20086744 OMA:TIHYANA ProtClustDB:CLSK789277
Uniprot:Q9KKJ4
Length = 343
Score = 143 (55.4 bits), Expect = 3.5e-08, Sum P(2) = 3.5e-08
Identities = 39/156 (25%), Positives = 68/156 (43%)
Query: 93 DPRGKIWAAPYRWGTMVIAYKKSKFRKHNLAPIEDWKDLWRPELAGRISMVNSPREVIGS 152
DP+ K ++ PY WG + Y S I W DLW + ++ +++ R+V G
Sbjct: 116 DPQNK-FSLPYIWGITGLYYNSSTLPNG----ITKWADLWDKQYEQQVMLIDDIRDVFGM 170
Query: 153 VLKYMGASYNSNNIDLQVAGGKISVXXXXXXXXXXXRLFDSTHYLKAFGIGDVWVAVGWS 212
LK G S N+ N + ++ S+ D+ H + G+ + + W+
Sbjct: 171 ALKLNGFSINTKNEE-EIKKAYESLVALKKNVLLYNS--DAPHV--PYVSGEATLGMQWN 225
Query: 213 SDVLPAVKRMSNVAVVVPKSGASLWADLWAIPAASR 248
+ M + V+P+ GA LW D + IP+ S+
Sbjct: 226 GNAYQGQVEMPELKFVMPEEGAVLWMDNFTIPSGSK 261
Score = 49 (22.3 bits), Expect = 3.5e-08, Sum P(2) = 3.5e-08
Identities = 24/82 (29%), Positives = 35/82 (42%)
Query: 263 PLIHQWIEFCLQTARALPFKQEVIPGASPSALETTLVKLPEELLKGKPSQDTNLIVGVPP 322
PL H++I F Q Q + G + SA + LP EL +D I P
Sbjct: 264 PLAHKFINFMYQPENQAEIVQSL--GYA-SATKGGRALLPAEL------RDNPTIF--PS 312
Query: 323 AEILARCEFLEPLSEATLSDYE 344
E + + EF+ + TL+ YE
Sbjct: 313 DEDMKKGEFINDVGPETLAIYE 334
>TIGR_CMR|SPO_3469 [details] [associations]
symbol:SPO_3469 "putrescine ABC transporter, periplasmic
putrescine-binding protein" species:246200 "Ruegeria pomeroyi
DSS-3" [GO:0015489 "putrescine transmembrane transporter activity"
evidence=ISS] [GO:0015847 "putrescine transport" evidence=ISS]
[GO:0019810 "putrescine binding" evidence=ISS] [GO:0030288 "outer
membrane-bounded periplasmic space" evidence=ISS] [GO:0042626
"ATPase activity, coupled to transmembrane movement of substances"
evidence=ISS] InterPro:IPR001188 PIRSF:PIRSF019574 PRINTS:PR00909
EMBL:CP000031 GenomeReviews:CP000031_GR GO:GO:0042597 GO:GO:0019808
HOGENOM:HOG000263815 KO:K11073 OMA:HPAEAHA GO:GO:0015846
RefSeq:YP_168665.1 ProteinModelPortal:Q5LMU3 SMR:Q5LMU3
GeneID:3195405 KEGG:sil:SPO3469 PATRIC:23380403
ProtClustDB:CLSK759288 Uniprot:Q5LMU3
Length = 361
Score = 151 (58.2 bits), Expect = 5.6e-08, P = 5.6e-08
Identities = 55/196 (28%), Positives = 89/196 (45%)
Query: 65 AGA-EDQDWFKCLSHK--WKVYLRRNDAGEIDPRGKIWAAPYRWGTMVIAYKKSKFRK-- 119
AGA + D K +H W R + DP G ++ Y WGT + K R+
Sbjct: 87 AGAFQKLDLSKLPNHANMWDQIESRT--AQYDP-GNEYSINYMWGTTGLGVNVGKVREVL 143
Query: 120 HNLAPIEDWKDLWRPE----LAG-RISMVNSPREVIGSVLKYMGASYNSNNIDLQVAGGK 174
AP+ ++ PE LA + +++P E+I + LKY+G + +S++ D+
Sbjct: 144 GEDAPMNSMDLVFNPENMEKLASCGVHFLDAPTELIPATLKYLGENPDSHDADVIAKAEP 203
Query: 175 ISVXXXXXXXXXXXRLFDSTHYLKAFGIGDVWVAVGWSSDVLPAVKRMSNV--AVVVP-- 230
+ + + F S+ Y+ A GD+ VA+GWS D+L A R + V +
Sbjct: 204 VLMAVRPYI-----QKFHSSEYINALANGDICVAIGWSGDILQARDRAAEADNGVEIEYH 258
Query: 231 --KSGASLWADLWAIP 244
K G+ +W D AIP
Sbjct: 259 AFKQGSLMWFDQMAIP 274
>UNIPROTKB|Q9KS37 [details] [associations]
symbol:VC1424 "Spermidine/putrescine ABC transporter,
periplasmic spermidine/putrescine-binding protein" species:243277
"Vibrio cholerae O1 biovar El Tor str. N16961" [GO:0015417
"polyamine-transporting ATPase activity" evidence=ISS] [GO:0015847
"putrescine transport" evidence=ISS] [GO:0015848 "spermidine
transport" evidence=ISS] InterPro:IPR001188 PIRSF:PIRSF019574
PRINTS:PR00909 GenomeReviews:AE003852_GR GO:GO:0042597 KO:K11069
GO:GO:0019808 GO:GO:0015417 GO:GO:0015847 GO:GO:0015848 HSSP:P23861
EMBL:AE004221 PIR:B82201 RefSeq:NP_231067.1
ProteinModelPortal:Q9KS37 SMR:Q9KS37 DNASU:2614056 GeneID:2614056
KEGG:vch:VC1424 PATRIC:20081910 OMA:DMVFPKE ProtClustDB:CLSK874367
Uniprot:Q9KS37
Length = 345
Score = 140 (54.3 bits), Expect = 9.0e-07, P = 9.0e-07
Identities = 54/221 (24%), Positives = 98/221 (44%)
Query: 29 FNKVKAKSAPYMAADLVSVGDSWLSFAIKKRLIEPIAGAEDQDWFKCLSHKWKVYLRRND 88
+ K+K + A Y DLV ++S K+ +++ I ++ FK L YL +
Sbjct: 64 YAKLKTQGAGY---DLVVPSTYFVSKMRKEGMLQEIDHSK-LSHFKDLDPN---YLNK-- 114
Query: 89 AGEIDPRGKIWAAPYRWGTMVIAYKKSKFRKHNLAPIEDWKDLWRPELAGRISMVNSPRE 148
DP K ++ PY WG I K +L ++W DLW + AG++ +++ RE
Sbjct: 115 --PFDPGNK-FSIPYIWGATGIGINTDMLDKKSL---KNWGDLWDAKWAGQLMLMDDARE 168
Query: 149 VIGSVLKYMGASYNSNNI-DLQVAGGKISVXXXXXXXXXXXRLFDSTHYLKAFGIGDVWV 207
V L +G S N+ N +++ A ++ F + YL G+V +
Sbjct: 169 VFHIALSKLGYSPNTTNPKEIKAAYRELKKLMPNVLVFNSD--FPANPYLA----GEVSL 222
Query: 208 AVGWSSDVLPAVKRMSNVAVVVPKSGASLWADLWAIPAASR 248
+ W+ A + + + ++ P+ G W D +IPA ++
Sbjct: 223 GMLWNGSAYMARQEGAPIQIIWPEKGTIFWMDSISIPAGAK 263
>TIGR_CMR|VC_1424 [details] [associations]
symbol:VC_1424 "spermidine/putrescine ABC transporter,
periplasmic spermidine/putrescine-binding protein" species:686
"Vibrio cholerae O1 biovar El Tor" [GO:0015417
"polyamine-transporting ATPase activity" evidence=ISS] [GO:0015847
"putrescine transport" evidence=ISS] [GO:0015848 "spermidine
transport" evidence=ISS] InterPro:IPR001188 PIRSF:PIRSF019574
PRINTS:PR00909 GenomeReviews:AE003852_GR GO:GO:0042597 KO:K11069
GO:GO:0019808 GO:GO:0015417 GO:GO:0015847 GO:GO:0015848 HSSP:P23861
EMBL:AE004221 PIR:B82201 RefSeq:NP_231067.1
ProteinModelPortal:Q9KS37 SMR:Q9KS37 DNASU:2614056 GeneID:2614056
KEGG:vch:VC1424 PATRIC:20081910 OMA:DMVFPKE ProtClustDB:CLSK874367
Uniprot:Q9KS37
Length = 345
Score = 140 (54.3 bits), Expect = 9.0e-07, P = 9.0e-07
Identities = 54/221 (24%), Positives = 98/221 (44%)
Query: 29 FNKVKAKSAPYMAADLVSVGDSWLSFAIKKRLIEPIAGAEDQDWFKCLSHKWKVYLRRND 88
+ K+K + A Y DLV ++S K+ +++ I ++ FK L YL +
Sbjct: 64 YAKLKTQGAGY---DLVVPSTYFVSKMRKEGMLQEIDHSK-LSHFKDLDPN---YLNK-- 114
Query: 89 AGEIDPRGKIWAAPYRWGTMVIAYKKSKFRKHNLAPIEDWKDLWRPELAGRISMVNSPRE 148
DP K ++ PY WG I K +L ++W DLW + AG++ +++ RE
Sbjct: 115 --PFDPGNK-FSIPYIWGATGIGINTDMLDKKSL---KNWGDLWDAKWAGQLMLMDDARE 168
Query: 149 VIGSVLKYMGASYNSNNI-DLQVAGGKISVXXXXXXXXXXXRLFDSTHYLKAFGIGDVWV 207
V L +G S N+ N +++ A ++ F + YL G+V +
Sbjct: 169 VFHIALSKLGYSPNTTNPKEIKAAYRELKKLMPNVLVFNSD--FPANPYLA----GEVSL 222
Query: 208 AVGWSSDVLPAVKRMSNVAVVVPKSGASLWADLWAIPAASR 248
+ W+ A + + + ++ P+ G W D +IPA ++
Sbjct: 223 GMLWNGSAYMARQEGAPIQIIWPEKGTIFWMDSISIPAGAK 263
>UNIPROTKB|P0AFK9 [details] [associations]
symbol:potD "putrescine / spermidine ABC transporter -
periplasmic binding protein" species:83333 "Escherichia coli K-12"
[GO:0019808 "polyamine binding" evidence=IEA] [GO:0015846
"polyamine transport" evidence=IEA;IMP] [GO:0015417
"polyamine-transporting ATPase activity" evidence=IMP]
InterPro:IPR001188 PIRSF:PIRSF019574 PRINTS:PR00909 EMBL:U00096
EMBL:AP009048 GenomeReviews:AP009048_GR GenomeReviews:U00096_GR
GO:GO:0042597 eggNOG:COG0687 KO:K11069 GO:GO:0019808 GO:GO:0015417
EMBL:M64519 TCDB:3.A.1.11.1 PIR:D40840 RefSeq:NP_415641.1
RefSeq:YP_489391.1 PDB:1POT PDB:1POY PDBsum:1POT PDBsum:1POY
ProteinModelPortal:P0AFK9 SMR:P0AFK9 IntAct:P0AFK9
SWISS-2DPAGE:P0AFK9 PaxDb:P0AFK9 PRIDE:P0AFK9
EnsemblBacteria:EBESCT00000003763 EnsemblBacteria:EBESCT00000015138
GeneID:12932803 GeneID:945682 KEGG:ecj:Y75_p1093 KEGG:eco:b1123
PATRIC:32117493 EchoBASE:EB0745 EcoGene:EG10752
HOGENOM:HOG000263814 OMA:VWNGSAY ProtClustDB:PRK09501
BioCyc:EcoCyc:POTD-MONOMER BioCyc:ECOL316407:JW1109-MONOMER
EvolutionaryTrace:P0AFK9 Genevestigator:P0AFK9 Uniprot:P0AFK9
Length = 348
Score = 138 (53.6 bits), Expect = 1.5e-06, P = 1.5e-06
Identities = 39/157 (24%), Positives = 68/157 (43%)
Query: 93 DPRGKIWAAPYRWGTMVIAYKKSKFRKHNLAPIEDWKDLWRPELAGRISMVNSPREVIGS 152
DP ++ PY WG I + + W DLW+PE G + + + REV
Sbjct: 120 DPNND-YSIPYIWGATAIGVNGDAVDPKS---VTSWADLWKPEYKGSLLLTDDAREVFQM 175
Query: 153 VLKYMGASYNSNNI-DLQVAGGKISVXXXXXXXXXXXRLFDSTHYLKAFGIGDVWVAVGW 211
L+ +G S N+ + +++ A ++ F+S + + G+V + + W
Sbjct: 176 ALRKLGYSGNTTDPKEIEAAYNELKKLMPNVAA------FNSDNPANPYMEGEVNLGMIW 229
Query: 212 SSDVLPAVKRMSNVAVVVPKSGASLWADLWAIPAASR 248
+ A + + + VV PK G W D AIPA ++
Sbjct: 230 NGSAFVARQAGTPIDVVWPKEGGIFWMDSLAIPANAK 266
>UNIPROTKB|Q9KS36 [details] [associations]
symbol:VC1425 "Spermidine/putrescine ABC transporter,
periplasmic spermidine/putrescine-binding protein" species:243277
"Vibrio cholerae O1 biovar El Tor str. N16961" [GO:0015417
"polyamine-transporting ATPase activity" evidence=ISS] [GO:0015847
"putrescine transport" evidence=ISS] [GO:0015848 "spermidine
transport" evidence=ISS] InterPro:IPR001188 PIRSF:PIRSF019574
PRINTS:PR00909 GenomeReviews:AE003852_GR GO:GO:0042597 KO:K11069
GO:GO:0019808 GO:GO:0015417 GO:GO:0015847 GO:GO:0015848 HSSP:P23861
OMA:LYSWADY EMBL:AE004221 PIR:C82201 RefSeq:NP_231068.1
ProteinModelPortal:Q9KS36 SMR:Q9KS36 DNASU:2614057 GeneID:2614057
KEGG:vch:VC1425 PATRIC:20081912 ProtClustDB:CLSK874368
Uniprot:Q9KS36
Length = 366
Score = 130 (50.8 bits), Expect = 1.3e-05, P = 1.3e-05
Identities = 33/123 (26%), Positives = 59/123 (47%)
Query: 126 EDWKDLWRPELAGRISMVNSPREVIGSVLKYMGASYNSNNIDLQVAGGKISVXXXXXXXX 185
+ W DLW+PEL G++ +++ REV L+ +G S NS + D Q+ +
Sbjct: 171 QSWGDLWKPELKGQLMLMDDTREVFHIALRKLGYSGNSTD-DKQIDEAYAELQKLMPNVL 229
Query: 186 XXXRLFDSTHYLKAFGIGDVWVAVGWSSDVLPAVKRMSNVAVVVPKSGASLWADLWAIPA 245
+F+S + + G+V + + W+ A K + +V PK G W D +AI +
Sbjct: 230 ----VFNSDNPAAPYLSGEVGLGMLWNGSAAAAQKEGLPIKLVFPKEGGIGWVDNFAISS 285
Query: 246 ASR 248
++
Sbjct: 286 GAK 288
>TIGR_CMR|VC_1425 [details] [associations]
symbol:VC_1425 "spermidine/putrescine ABC transporter,
periplasmic spermidine/putrescine-binding protein" species:686
"Vibrio cholerae O1 biovar El Tor" [GO:0015417
"polyamine-transporting ATPase activity" evidence=ISS] [GO:0015847
"putrescine transport" evidence=ISS] [GO:0015848 "spermidine
transport" evidence=ISS] InterPro:IPR001188 PIRSF:PIRSF019574
PRINTS:PR00909 GenomeReviews:AE003852_GR GO:GO:0042597 KO:K11069
GO:GO:0019808 GO:GO:0015417 GO:GO:0015847 GO:GO:0015848 HSSP:P23861
OMA:LYSWADY EMBL:AE004221 PIR:C82201 RefSeq:NP_231068.1
ProteinModelPortal:Q9KS36 SMR:Q9KS36 DNASU:2614057 GeneID:2614057
KEGG:vch:VC1425 PATRIC:20081912 ProtClustDB:CLSK874368
Uniprot:Q9KS36
Length = 366
Score = 130 (50.8 bits), Expect = 1.3e-05, P = 1.3e-05
Identities = 33/123 (26%), Positives = 59/123 (47%)
Query: 126 EDWKDLWRPELAGRISMVNSPREVIGSVLKYMGASYNSNNIDLQVAGGKISVXXXXXXXX 185
+ W DLW+PEL G++ +++ REV L+ +G S NS + D Q+ +
Sbjct: 171 QSWGDLWKPELKGQLMLMDDTREVFHIALRKLGYSGNSTD-DKQIDEAYAELQKLMPNVL 229
Query: 186 XXXRLFDSTHYLKAFGIGDVWVAVGWSSDVLPAVKRMSNVAVVVPKSGASLWADLWAIPA 245
+F+S + + G+V + + W+ A K + +V PK G W D +AI +
Sbjct: 230 ----VFNSDNPAAPYLSGEVGLGMLWNGSAAAAQKEGLPIKLVFPKEGGIGWVDNFAISS 285
Query: 246 ASR 248
++
Sbjct: 286 GAK 288
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.319 0.134 0.414 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 380 369 0.00085 117 3 11 22 0.39 34
34 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 14
No. of states in DFA: 628 (67 KB)
Total size of DFA: 266 KB (2137 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 27.46u 0.10s 27.56t Elapsed: 00:00:02
Total cpu time: 27.47u 0.10s 27.57t Elapsed: 00:00:02
Start: Tue May 21 02:46:52 2013 End: Tue May 21 02:46:54 2013