BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016927
(380 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1A99|A Chain A, Putrescine Receptor (Potf) From E. Coli
pdb|1A99|B Chain B, Putrescine Receptor (Potf) From E. Coli
pdb|1A99|C Chain C, Putrescine Receptor (Potf) From E. Coli
pdb|1A99|D Chain D, Putrescine Receptor (Potf) From E. Coli
Length = 344
Score = 77.0 bits (188), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 59/219 (26%), Positives = 95/219 (43%), Gaps = 24/219 (10%)
Query: 43 DLVSVGDSWLSFAIKKRLIEPIAGAEDQDWFKCLSHKWKVYLRRNDAGEIDPRGKIWAAP 102
DLV S+L + + +P+ ++ +W K+ + DP K +A P
Sbjct: 54 DLVVPSASFLERQLTAGVFQPLDKSKLPEWKNLDPELLKLVAKH------DPDNK-FAMP 106
Query: 103 YRWGTMVIAYKKSKFRK--HNLAPIEDWKDLWRPELAGR-----ISMVNSPREVIGSVLK 155
Y W T I Y K + AP++ W + +PE + +S +++P EV +VL
Sbjct: 107 YMWATTGIGYNVDKVKAVLGENAPVDSWDLILKPENLEKLKSCGVSFLDAPEEVFATVLN 166
Query: 156 YMGASYNSNNIDLQVAGGKISVXXXXXXXXXXXRLFDSTHYLKAFGIGDVWVAVGWSSDV 215
Y+G NS D R F S+ Y+ GD+ VA+GW+ DV
Sbjct: 167 YLGKDPNSTKADDYTG----PATDLLLKLRPNIRYFHSSQYINDLANGDICVAIGWAGDV 222
Query: 216 LPAVKRMS------NVAVVVPKSGASLWADLWAIPAASR 248
A R NV+ +PK GA + D++A+PA ++
Sbjct: 223 WQASNRAKEAKNGVNVSFSIPKEGAMAFFDVFAMPADAK 261
>pdb|4GL0|A Chain A, Putative SpermidinePUTRESCINE ABC TRANSPORTER FROM
LISTERIA Monocytogenes
Length = 333
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 71/254 (27%), Positives = 108/254 (42%), Gaps = 33/254 (12%)
Query: 99 WAAPYRWGTMVIAYKKSKFRKHNLAPIEDWKDLWRPELAGRISMVNSPREVIGSVLKYMG 158
++ PY WGT+ I Y K F N + W L+ PEL +I +++ REV G L +G
Sbjct: 108 YSXPYFWGTLGIIYNKEXFPDKNF---DTWNALFDPELKNQILLIDGAREVXGLGLNSLG 164
Query: 159 ASYN-SNNIDLQVAGGKISVXXXXXXXXXXXRLFDSTHYLKAFGIGDVWVAVGWSSDVLP 217
S N +N LQ A K+ + D L A + VAV +S +
Sbjct: 165 YSLNDTNKAHLQAARDKLETXTPNVKAI----VGDEIKLLXA--DNEAGVAVTFSGEAAE 218
Query: 218 AVKRMSNVAVVVPKSGASLWADLWAIPAASRLETKQIGGRVRGPSPLIHQWIEFCLQTAR 277
+ ++ V+PK G++LW D IP + K + G H++I F L+
Sbjct: 219 XLSENEDLEYVIPKDGSNLWFDNXVIPKTA----KNVDG--------AHKFINFXLKPEN 266
Query: 278 ALPFKQEVIPGASPSALETTLVKLPEELLKGKPSQDTNLIVGVPPAEILARCEFLEPLSE 337
A E + A+P+A L LP+E+ S D P + L E + L +
Sbjct: 267 A-AINAEYVGYATPNAKAVEL--LPKEI-----SSDERF---YPDXDELNNLEVYDNLGK 315
Query: 338 ATLSDYEWLVADLQ 351
LS Y L + +
Sbjct: 316 RXLSYYNELFLEFK 329
>pdb|3TTL|A Chain A, Crystal Structure Of Apo-Spue
pdb|3TTL|B Chain B, Crystal Structure Of Apo-Spue
Length = 340
Score = 72.0 bits (175), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 67/254 (26%), Positives = 110/254 (43%), Gaps = 38/254 (14%)
Query: 91 EIDPRGKIWAAPYRWGTMVIAYKKSKFRK-HNLAPIEDWKDLWRPELAGR-----ISMVN 144
E+ G +A PY WGT I Y +K ++ PI+ W L+ PE + ++ ++
Sbjct: 96 EVSDPGNQYAVPYLWGTNGIGYNVAKVKEVLGDQPIDSWAILFEPENMKKLAKCGVAFMD 155
Query: 145 SPREVIGSVLKYMGASYNSNN-IDLQVAGGKISVXXXXXXXXXXXRLFDSTHYLKAFGIG 203
S E++ + L Y+G N+++ D + A ++ F S+ Y+ G
Sbjct: 156 SGDEMLPAALNYLGLDPNTHDPKDYKKAEEVLT------KVRPYVSYFHSSKYISDLANG 209
Query: 204 DVWVAVGWSSDVLPAVKRMS------NVAVVVPKSGASLWADLWAIPAASRLETKQIGGR 257
++ VA G+S DV A R ++ V+PK GA+LW DL AIPA ++
Sbjct: 210 NICVAFGYSGDVFQAAARAEEAGKGIDIQYVIPKEGANLWFDLMAIPADAKAADNA---- 265
Query: 258 VRGPSPLIHQWIEFCLQTARALPFKQEV-----IPGASPSALETTLVKLPEELLKGKPSQ 312
+ +I++ L+ V IPGA P L V EE+ +
Sbjct: 266 --------YAFIDYLLRPEVIAKVSDYVGYANAIPGARP--LMDKSVSDSEEVYPPQAVL 315
Query: 313 DTNLIVGVPPAEIL 326
D + V PA++L
Sbjct: 316 DKLYVSAVLPAKVL 329
>pdb|3TTN|A Chain A, Crystal Structures Of Polyamine Receptors Spud And Spue
From Pseudomonas Aeruginosa
pdb|3TTN|B Chain B, Crystal Structures Of Polyamine Receptors Spud And Spue
From Pseudomonas Aeruginosa
Length = 340
Score = 71.2 bits (173), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 67/254 (26%), Positives = 108/254 (42%), Gaps = 38/254 (14%)
Query: 91 EIDPRGKIWAAPYRWGTMVIAYKKSKFRK-HNLAPIEDWKDLWRPELAGR-----ISMVN 144
E+ G +A PY WGT I Y +K ++ PI+ W L+ PE + ++ +
Sbjct: 96 EVSDPGNQYAVPYLWGTNGIGYNVAKVKEVLGDQPIDSWAILFEPENXKKLAKCGVAFXD 155
Query: 145 SPREVIGSVLKYMGASYNSNN-IDLQVAGGKISVXXXXXXXXXXXRLFDSTHYLKAFGIG 203
S E + + L Y+G N+++ D + A ++ F S+ Y+ G
Sbjct: 156 SGDEXLPAALNYLGLDPNTHDPKDYKKAEEVLT------KVRPYVSYFHSSKYISDLANG 209
Query: 204 DVWVAVGWSSDVLPAVKRMS------NVAVVVPKSGASLWADLWAIPAASRLETKQIGGR 257
++ VA G+S DV A R ++ V+PK GA+LW DL AIPA ++
Sbjct: 210 NICVAFGYSGDVFQAAARAEEAGKGIDIQYVIPKEGANLWFDLXAIPADAKAADNA---- 265
Query: 258 VRGPSPLIHQWIEFCLQTARALPFKQEV-----IPGASPSALETTLVKLPEELLKGKPSQ 312
+ +I++ L+ V IPGA P L V EE+ +
Sbjct: 266 --------YAFIDYLLRPEVIAKVSDYVGYANAIPGARP--LXDKSVSDSEEVYPPQAVL 315
Query: 313 DTNLIVGVPPAEIL 326
D + V PA++L
Sbjct: 316 DKLYVSAVLPAKVL 329
>pdb|3TTK|A Chain A, Crystal Structure Of Apo-Spud
pdb|3TTK|B Chain B, Crystal Structure Of Apo-Spud
pdb|3TTK|C Chain C, Crystal Structure Of Apo-Spud
Length = 345
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 69/273 (25%), Positives = 118/273 (43%), Gaps = 38/273 (13%)
Query: 43 DLVSVGDSWLSFAIKKRLIEPIAGAEDQDW---FKCLSHKWKVYLRRNDAGEIDPRGKIW 99
D+V +S+L+ IK + + + ++ +W K L H +V DP G
Sbjct: 58 DVVVPSNSFLAKQIKAGVYQKLDKSKLPNWKNLNKDLMHTLEV---------SDP-GNEH 107
Query: 100 AAPYRWGTMVIAYKKSKFRK--HNLAPIEDWKDLWRPELAGR-----ISMVNSPREVIGS 152
A PY WGT+ I Y K + + AP++ W +++PE + +S ++SP E++ +
Sbjct: 108 AIPYMWGTIGIGYNPDKVKAAFGDNAPVDSWDLVFKPENIQKLKQCGVSFLDSPTEILPA 167
Query: 153 VLKYMGASYNSNNIDLQVAGGKISVXXXXXXXXXXXRLFDSTHYLKAFGIGDVWVAVGWS 212
L Y+G +++N A ++ + F S+ Y+ G++ VA+G+S
Sbjct: 168 ALHYLGYKPDTDNPKELKAAEELFLKIRPYVT-----YFHSSKYISDLANGNICVAIGYS 222
Query: 213 SDVLPAVKRMS------NVAVVVPKSGASLWADLWAIPAASRLETKQIG--GRVRGPSPL 264
D+ A R V +PK GA + D+ AIP + + + P +
Sbjct: 223 GDIYQAKSRAEEAKNKVTVKYNIPKEGAGSFFDMVAIPKDAENTEGALAFVNFLMKPEIM 282
Query: 265 --IHQWIEFCLQTARALPFKQEVI---PGASPS 292
I ++F A A P E I PG PS
Sbjct: 283 AEITDVVQFPNGNAAATPLVSEAIRNDPGIYPS 315
>pdb|3TTM|A Chain A, Crystal Structure Of Spud In Complex With Putrescine
pdb|3TTM|B Chain B, Crystal Structure Of Spud In Complex With Putrescine
Length = 346
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 69/273 (25%), Positives = 118/273 (43%), Gaps = 38/273 (13%)
Query: 43 DLVSVGDSWLSFAIKKRLIEPIAGAEDQDW---FKCLSHKWKVYLRRNDAGEIDPRGKIW 99
D+V +S+L+ IK + + + ++ +W K L H +V DP G
Sbjct: 58 DVVVPSNSFLAKQIKAGVYQKLDKSKLPNWKNLNKDLMHTLEV---------SDP-GNEH 107
Query: 100 AAPYRWGTMVIAYKKSKFRK--HNLAPIEDWKDLWRPELAGR-----ISMVNSPREVIGS 152
A PY WGT+ I Y K + + AP++ W +++PE + +S ++SP E++ +
Sbjct: 108 AIPYMWGTIGIGYNPDKVKAAFGDNAPVDSWDLVFKPENIQKLKQCGVSFLDSPTEILPA 167
Query: 153 VLKYMGASYNSNNIDLQVAGGKISVXXXXXXXXXXXRLFDSTHYLKAFGIGDVWVAVGWS 212
L Y+G +++N A ++ + F S+ Y+ G++ VA+G+S
Sbjct: 168 ALHYLGYKPDTDNPKELKAAEELFLKIRPYVT-----YFHSSKYISDLANGNICVAIGYS 222
Query: 213 SDVLPAVKRMS------NVAVVVPKSGASLWADLWAIPAASRLETKQIG--GRVRGPSPL 264
D+ A R V +PK GA + D+ AIP + + + P +
Sbjct: 223 GDIYQAKSRAEEAKNKVTVKYNIPKEGAGSFFDMVAIPKDAENTEGALAFVNFLMKPEIM 282
Query: 265 --IHQWIEFCLQTARALPFKQEVI---PGASPS 292
I ++F A A P E I PG PS
Sbjct: 283 AEITDVVQFPNGNAAATPLVSEAIRNDPGIYPS 315
>pdb|4EQB|A Chain A, 1.5 Angstrom Crystal Structure Of SpermidinePUTRESCINE ABC
Transporter Substrate-Binding Protein From Streptococcus
Pneumoniae Strain Canada Mdr_19a In Complex With Calcium
And Hepes.
pdb|4EQB|B Chain B, 1.5 Angstrom Crystal Structure Of SpermidinePUTRESCINE ABC
Transporter Substrate-Binding Protein From Streptococcus
Pneumoniae Strain Canada Mdr_19a In Complex With Calcium
And Hepes
Length = 330
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 57/220 (25%), Positives = 93/220 (42%), Gaps = 29/220 (13%)
Query: 92 IDPRGKIWAAPYRWGTMVIAYKKSKFRKHNLAPIEDWKDLWRPELAGRISMVNSPREVIG 151
DP G ++ PY WGT+ I Y ++ + AP E W DLW+ E I + + REV+G
Sbjct: 100 FDP-GNKFSIPYFWGTLGIVYNETMVDE---AP-EHWDDLWKLEYKNSIMLFDGAREVLG 154
Query: 152 SVLKYMGASYNSNN-IDLQVAGGKISVXXXXXXXXXXXRLFDSTHYLKAFGI-GDVWVAV 209
L +G S NS + L+ K+ + K + I +V + V
Sbjct: 155 LGLNSLGYSLNSKDPQQLEETVDKLYKLTPNIKAIVADEM-------KGYMIQNNVAIGV 207
Query: 210 GWSSDVLPAVKRMSNVAVVVPKSGASLWADLWAIPAASRLETKQIGGRVRGPSPLIHQWI 269
+S + +++ N+ VVP ++LW D IP + + + +I
Sbjct: 208 TFSGEASQMLEKNENLRYVVPTEASNLWFDNMVIPKTVKNQDS------------AYAFI 255
Query: 270 EFCLQTARALPFKQEVIPGASPSALETTLVKLPEELLKGK 309
F L+ AL E + ++P+ L LPEE + K
Sbjct: 256 NFMLKPENALQ-NAEYVGYSTPNLPAKEL--LPEETKEDK 292
>pdb|2V84|A Chain A, Crystal Structure Of The Tp0655 (Tppotd) Lipoprotein Of
Treponema Pallidum
Length = 343
Score = 55.5 bits (132), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 74/280 (26%), Positives = 119/280 (42%), Gaps = 37/280 (13%)
Query: 6 KRLKFQMNLCASIDGIVNNLSVPFNKVKAKSAPYMAADLVSVGDSWLSFAIKKRLIEPIA 65
K+ + Q N+ D +N + F K+ ++ Y DLV ++S +K L+E I
Sbjct: 42 KKFEQQYNVQVVYDDYASNEDM-FAKLSIGASGY---DLVVPSGDFVSIMKRKHLLEKI- 96
Query: 66 GAEDQDWFKCLSHKW-KVYLRRNDAGEIDPRGKIWAAPYRWGTMVIAYKKSKFRKHNLAP 124
D K + ++ K +R A DP+ + ++ PY G IA K +
Sbjct: 97 -----DLSKIPNVQFIKESVRARIA--YDPKME-YSVPYYLGAAGIAVNKKAVPSY---- 144
Query: 125 IEDWKDLWRPELAGRISMVNSPREVIGSVLKYMGASYNSNNIDLQVAGGKISVXXXXXXX 184
W R +LA R+SM++ REV+G+ L +G + N+ N + ++A I V
Sbjct: 145 ARTWSIFSRKDLAYRMSMMDDMREVMGAALASLGYNVNTKN-EQELAQAAILVTDHWKPN 203
Query: 185 XXXXRLFDSTHYLKAFGIGDVWVAVGWSSDVLPAVKR--MSNVAVVVPKSGAS-LWADLW 241
FDS Y K+F GD VA G++ ++ +P+ AS ++ D +
Sbjct: 204 LVK---FDSDGYAKSFASGDFVVAHGFAEAFFAETPEAMHEHIDFFIPQDVASPVYVDSF 260
Query: 242 AIPAASRLETKQIGGRVRGPSPLIHQWIEFCLQTARALPF 281
IP G R R L H +I F L+ A F
Sbjct: 261 CIPK---------GARNRD---LAHAFINFFLEPAHYAEF 288
>pdb|1POY|1 Chain 1, SpermidinePUTRESCINE-Binding Protein Complexed With
Spermidine (Dimer Form)
pdb|1POY|2 Chain 2, SpermidinePUTRESCINE-Binding Protein Complexed With
Spermidine (Dimer Form)
pdb|1POY|3 Chain 3, SpermidinePUTRESCINE-Binding Protein Complexed With
Spermidine (Dimer Form)
pdb|1POY|4 Chain 4, SpermidinePUTRESCINE-Binding Protein Complexed With
Spermidine (Dimer Form)
Length = 323
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/158 (24%), Positives = 68/158 (43%), Gaps = 11/158 (6%)
Query: 92 IDPRGKIWAAPYRWGTMVIAYKKSKFRKHNLAPIEDWKDLWRPELAGRISMVNSPREVIG 151
DP ++ PY WG I + + W DLW+PE G + + + REV
Sbjct: 94 FDPNND-YSIPYIWGATAIGVNGDAVDPKS---VTSWADLWKPEYKGSLLLTDDAREVFQ 149
Query: 152 SVLKYMGASYNSNN-IDLQVAGGKISVXXXXXXXXXXXRLFDSTHYLKAFGIGDVWVAVG 210
L+ +G S N+ + +++ A ++ F+S + + G+V + +
Sbjct: 150 MALRKLGYSGNTTDPKEIEAAYNELKKLMPNVAA------FNSDNPANPYMEGEVNLGMI 203
Query: 211 WSSDVLPAVKRMSNVAVVVPKSGASLWADLWAIPAASR 248
W+ A + + + VV PK G W D AIPA ++
Sbjct: 204 WNGSAFVARQAGTPIDVVWPKEGGIFWMDSLAIPANAK 241
>pdb|1POT|A Chain A, Spermidine/putrescine-binding Protein Complexed With
Spermidine (monomer Form)
Length = 325
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/158 (24%), Positives = 68/158 (43%), Gaps = 11/158 (6%)
Query: 92 IDPRGKIWAAPYRWGTMVIAYKKSKFRKHNLAPIEDWKDLWRPELAGRISMVNSPREVIG 151
DP ++ PY WG I + + W DLW+PE G + + + REV
Sbjct: 96 FDPNND-YSIPYIWGATAIGVNGDAVDPKS---VTSWADLWKPEYKGSLLLTDDAREVFQ 151
Query: 152 SVLKYMGASYNSNN-IDLQVAGGKISVXXXXXXXXXXXRLFDSTHYLKAFGIGDVWVAVG 210
L+ +G S N+ + +++ A ++ F+S + + G+V + +
Sbjct: 152 MALRKLGYSGNTTDPKEIEAAYNELKKLMPNVAA------FNSDNPANPYMEGEVNLGMI 205
Query: 211 WSSDVLPAVKRMSNVAVVVPKSGASLWADLWAIPAASR 248
W+ A + + + VV PK G W D AIPA ++
Sbjct: 206 WNGSAFVARQAGTPIDVVWPKEGGIFWMDSLAIPANAK 243
>pdb|3RRW|A Chain A, Crystal Structure Of The Tl29 Protein From Arabidopsis
Thaliana
pdb|3RRW|B Chain B, Crystal Structure Of The Tl29 Protein From Arabidopsis
Thaliana
Length = 268
Score = 34.7 bits (78), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 59/132 (44%), Gaps = 20/132 (15%)
Query: 8 LKFQMNLC-ASIDGIVNNLSVPFNKVK------AKSAPYMAADLVSV-GDSWLSFAIKKR 59
++F L A +G+ + LS+ +VK +K P AD++ + G S + F
Sbjct: 59 IRFSSELSRAENEGLSDGLSL-IEEVKKEIDSISKGGPISYADIIQLAGQSAVKFTYLAS 117
Query: 60 LIEPIAGAEDQDWFKCLSH----KWKVYLR---RNDAGEIDPRGKIWAAPYRWGTMVIAY 112
I G E++ ++ +W ++ R R+DA E DP G++ P +WG +
Sbjct: 118 AIRKCGGNEEKGNLLYTAYGSAGQWGLFDRNFGRSDATEADPEGRV---P-QWGKATVQE 173
Query: 113 KKSKFRKHNLAP 124
K KF L P
Sbjct: 174 XKDKFIAVGLGP 185
>pdb|4EDP|A Chain A, 1.85 Angstrom Resolution Crystal Structure Of An Abc
Transporter From Clostridium Perfringens Atcc 13124
pdb|4EDP|B Chain B, 1.85 Angstrom Resolution Crystal Structure Of An Abc
Transporter From Clostridium Perfringens Atcc 13124
Length = 351
Score = 29.3 bits (64), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 39/176 (22%), Positives = 66/176 (37%), Gaps = 35/176 (19%)
Query: 125 IEDWKDLWRPELAGRISM-----VNSPREVIGSVLKYMGASYNSNNIDLQVAGGKISVXX 179
I W+DLW+PEL +I++ N P V + K +D++ G+ +
Sbjct: 153 INSWEDLWKPELKNKIAIPDITTTNGPAMVEIAAEKA--------GVDVKTDNGEAAFKE 204
Query: 180 XXXXXXXXXRLFD-STHYLKAFGIGDVWVAVGWSSDVLPAVKRMSNVAVVVPKSGASLWA 238
+ + S+ F G++ AV K V V+P+SG L
Sbjct: 205 LEALKPNVVKTYSKSSDLANMFSNGEIVAAVASDFAFGTISKAKPEVINVIPESGTYLNF 264
Query: 239 DLWAIPAASRLETKQIGGRVRGPSPLIHQWIEFCL------QTARAL---PFKQEV 285
+ I S+ L +++I + L +TA+AL P +EV
Sbjct: 265 NTININKNSK------------NKDLAYEFINYALSKEVQEKTAKALNESPVNKEV 308
>pdb|2XPI|A Chain A, Crystal Structure Of ApcC HETERO-Tetramer Cut9-Hcn1
pdb|2XPI|D Chain D, Crystal Structure Of ApcC HETERO-Tetramer Cut9-Hcn1
Length = 597
Score = 29.3 bits (64), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 24/108 (22%), Positives = 48/108 (44%), Gaps = 3/108 (2%)
Query: 202 IGDVWVAVGWSSDVLPAVKRMSNVAVVVPKSGASL--WADLWAIPAASRLETKQIGGRVR 259
+ ++ V SD+ A+ N ++V K+ ++ WA WA + + K +
Sbjct: 478 LNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAID 537
Query: 260 GPSP-LIHQWIEFCLQTARALPFKQEVIPGASPSALETTLVKLPEELL 306
+ L+ + + TA AL + + IPG + + L +L P E++
Sbjct: 538 ALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIM 585
>pdb|1IF1|A Chain A, Interferon Regulatory Factor 1 (Irf-1) Complex With Dna
pdb|1IF1|B Chain B, Interferon Regulatory Factor 1 (Irf-1) Complex With Dna
Length = 113
Score = 28.9 bits (63), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 75 CLSHKWKVYLRRNDAGEIDPRGKIWAAPYR 104
CL W ++ R AGE +P K W A +R
Sbjct: 53 CLFRSWAIHTGRYKAGEKEPDPKTWKANFR 82
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,211,644
Number of Sequences: 62578
Number of extensions: 449167
Number of successful extensions: 931
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 905
Number of HSP's gapped (non-prelim): 15
length of query: 380
length of database: 14,973,337
effective HSP length: 101
effective length of query: 279
effective length of database: 8,652,959
effective search space: 2414175561
effective search space used: 2414175561
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)