BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016927
(380 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P31133|POTF_ECOLI Putrescine-binding periplasmic protein OS=Escherichia coli (strain
K12) GN=potF PE=1 SV=3
Length = 370
Score = 79.7 bits (195), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 62/219 (28%), Positives = 99/219 (45%), Gaps = 24/219 (10%)
Query: 43 DLVSVGDSWLSFAIKKRLIEPIAGAEDQDWFKCLSHKWKVYLRRNDAGEIDPRGKIWAAP 102
DLV S+L + + +P+ ++ +W K+ + DP K +A P
Sbjct: 80 DLVVPSASFLERQLTAGVFQPLDKSKLPEWKNLDPELLKLVAKH------DPDNK-FAMP 132
Query: 103 YRWGTMVIAYKKSKFRK--HNLAPIEDWKDLWRPELAGR-----ISMVNSPREVIGSVLK 155
Y W T I Y K + AP++ W + +PE + +S +++P EV +VL
Sbjct: 133 YMWATTGIGYNVDKVKAVLGENAPVDSWDLILKPENLEKLKSCGVSFLDAPEEVFATVLN 192
Query: 156 YMGASYNSNNIDLQVAGGKISVQQNLALLANQARLFDSTHYLKAFGIGDVWVAVGWSSDV 215
Y+G NS D G + L L R F S+ Y+ GD+ VA+GW+ DV
Sbjct: 193 YLGKDPNSTKAD-DYTGPATDL---LLKLRPNIRYFHSSQYINDLANGDICVAIGWAGDV 248
Query: 216 LPAVKRMS------NVAVVVPKSGASLWADLWAIPAASR 248
A R NV+ +PK GA + D++A+PA ++
Sbjct: 249 WQASNRAKEAKNGVNVSFSIPKEGAMAFFDVFAMPADAK 287
>sp|P44731|POTD2_HAEIN Spermidine/putrescine-binding periplasmic protein 2 OS=Haemophilus
influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
GN=potD-A PE=3 SV=2
Length = 350
Score = 75.1 bits (183), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 66/237 (27%), Positives = 104/237 (43%), Gaps = 31/237 (13%)
Query: 43 DLVSVGDSWLSFAIKKRLIEPIAGAEDQDWFKCLSHKWKVYLRRNDAGEIDPRGKIWAAP 102
DLV +++ IK+++++PI DQ + K L + E DP K ++ P
Sbjct: 81 DLVFPSSYYVNKMIKEKMLQPI----DQSKLTNIHQIPKHLLNK----EFDPENK-YSLP 131
Query: 103 YRWGTMVIAYKKSKFRKHNLAPIEDWKDLWRPELAGRISMVNSPREVIGSVLKYMGASYN 162
Y +G I + I W DLW+PE G++ M + REV L G S N
Sbjct: 132 YVYGLTGIEVNADEIDPKT---ITSWADLWKPEFKGKVLMTSDAREVFHVALLLDGKSPN 188
Query: 163 SNN-IDLQVAGGKISVQQNLALLANQARLFDSTHYLKAFGIGDVWVAVGWSSDVLPAVKR 221
+ N D++ A ++ LL N A F+S + G+V + + W+ A K
Sbjct: 189 TTNEEDIKTAYERLE-----KLLPNVAT-FNSDSPEVPYVQGEVAIGMIWNGSAYLAQKE 242
Query: 222 MSNVAVVVPKSGASLWADLWAIPAASRLETKQIGGRVRGPSPLIHQWIEFCLQTARA 278
++ V PK GA W D +AIP ++ V G H++I+F L+ A
Sbjct: 243 NQSLQFVYPKEGAIFWMDNYAIPTTAK--------NVEGA----HKFIDFLLRPENA 287
>sp|P45168|POTD1_HAEIN Spermidine/putrescine-binding periplasmic protein 1 OS=Haemophilus
influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
GN=potD-B PE=3 SV=1
Length = 360
Score = 65.1 bits (157), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 58/218 (26%), Positives = 94/218 (43%), Gaps = 23/218 (10%)
Query: 91 EIDP--------RGKIWAAPYRWGTMVIAYKKSKFRKHNLAPIEDWKDLWRPELAGRISM 142
E+DP +G ++ P G IA+ + ++ W DLW+PE A ++ +
Sbjct: 121 ELDPDWLNKPYDKGNKYSLPQLLGAPGIAFNTNTYKGEQFT---SWADLWKPEFANKVQL 177
Query: 143 VNSPREVIGSVLKYMGASYNSNNIDLQVAGGKISVQQNLALLANQARLFDSTHYLKAFGI 202
++ REV L +G N+ + A K + ++ L L N F+S + +F
Sbjct: 178 LDDAREVFNIALLKIGQDPNTQD----PAIIKQAYEELLKLRPN-VLSFNSDNPANSFIS 232
Query: 203 GDVWVAVGWSSDVLPAVKRMSNVAVVVPKSGASLWADLWAIPA-------ASRLETKQIG 255
G+V V W+ V A K + + +V PK G LW D AIPA A +L +G
Sbjct: 233 GEVEVGQLWNGSVRIAKKEKAPLNMVFPKEGPVLWVDTLAIPATAKNSEGAHKLINYMLG 292
Query: 256 GRVRGPSPLIHQWIEFCLQTARALPFKQEVIPGASPSA 293
+ L + ++ +ALP + P PSA
Sbjct: 293 KKTAEKLTLAIGYPTSNIEAKKALPKEITEDPAIYPSA 330
>sp|P0AFL0|POTD_SHIFL Spermidine/putrescine-binding periplasmic protein OS=Shigella
flexneri GN=potD PE=3 SV=1
Length = 348
Score = 56.6 bits (135), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 43/158 (27%), Positives = 68/158 (43%), Gaps = 11/158 (6%)
Query: 92 IDPRGKIWAAPYRWGTMVIAYKKSKFRKHNLAPIEDWKDLWRPELAGRISMVNSPREVIG 151
DP ++ PY WG I + + W DLW+PE G + + + REV
Sbjct: 119 FDPNND-YSIPYIWGATAIGVNGDAVDPKS---VTSWADLWKPEYKGSLLLTDDAREVFQ 174
Query: 152 SVLKYMGASYNSNNIDLQVAGGKISVQQN-LALLANQARLFDSTHYLKAFGIGDVWVAVG 210
L+ +G Y+ N D + +I N L L F+S + + G+V + +
Sbjct: 175 MALRKLG--YSGNTTDPK----EIEAAYNELKKLMPNVAAFNSDNPANPYMEGEVNLGMI 228
Query: 211 WSSDVLPAVKRMSNVAVVVPKSGASLWADLWAIPAASR 248
W+ A + + + VV PK G W D AIPA ++
Sbjct: 229 WNGSAFVARQAGTPIDVVWPKEGGIFWMDSLAIPANAK 266
>sp|P0AFK9|POTD_ECOLI Spermidine/putrescine-binding periplasmic protein OS=Escherichia
coli (strain K12) GN=potD PE=1 SV=1
Length = 348
Score = 56.6 bits (135), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 43/158 (27%), Positives = 68/158 (43%), Gaps = 11/158 (6%)
Query: 92 IDPRGKIWAAPYRWGTMVIAYKKSKFRKHNLAPIEDWKDLWRPELAGRISMVNSPREVIG 151
DP ++ PY WG I + + W DLW+PE G + + + REV
Sbjct: 119 FDPNND-YSIPYIWGATAIGVNGDAVDPKS---VTSWADLWKPEYKGSLLLTDDAREVFQ 174
Query: 152 SVLKYMGASYNSNNIDLQVAGGKISVQQN-LALLANQARLFDSTHYLKAFGIGDVWVAVG 210
L+ +G Y+ N D + +I N L L F+S + + G+V + +
Sbjct: 175 MALRKLG--YSGNTTDPK----EIEAAYNELKKLMPNVAAFNSDNPANPYMEGEVNLGMI 228
Query: 211 WSSDVLPAVKRMSNVAVVVPKSGASLWADLWAIPAASR 248
W+ A + + + VV PK G W D AIPA ++
Sbjct: 229 WNGSAFVARQAGTPIDVVWPKEGGIFWMDSLAIPANAK 266
>sp|P0A2C7|POTD_SALTY Spermidine/putrescine-binding periplasmic protein OS=Salmonella
typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
GN=potD PE=3 SV=1
Length = 348
Score = 55.8 bits (133), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 41/158 (25%), Positives = 67/158 (42%), Gaps = 11/158 (6%)
Query: 92 IDPRGKIWAAPYRWGTMVIAYKKSKFRKHNLAPIEDWKDLWRPELAGRISMVNSPREVIG 151
DP ++ PY WG I I W DLW+PE + + + REV
Sbjct: 119 FDPNND-YSVPYIWGATAIGVNSDAIDPKT---ITSWADLWKPEYKNSLLLTDDAREVFQ 174
Query: 152 SVLKYMGASYNSNN-IDLQVAGGKISVQQNLALLANQARLFDSTHYLKAFGIGDVWVAVG 210
L+ +G S N+ + +++ A + L L F+S + + G+V + +
Sbjct: 175 MALRKLGYSGNTTDPKEIEAA------YEELKKLMPNVAAFNSDNPANPYMEGEVNLGMV 228
Query: 211 WSSDVLPAVKRMSNVAVVVPKSGASLWADLWAIPAASR 248
W+ A + + + VV PK G W D AIPA ++
Sbjct: 229 WNGSAFVARQAGTPLEVVWPKEGGIFWMDSLAIPANAK 266
>sp|P0A2C8|POTD_SALTI Spermidine/putrescine-binding periplasmic protein OS=Salmonella
typhi GN=potD PE=3 SV=1
Length = 348
Score = 55.8 bits (133), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 41/158 (25%), Positives = 67/158 (42%), Gaps = 11/158 (6%)
Query: 92 IDPRGKIWAAPYRWGTMVIAYKKSKFRKHNLAPIEDWKDLWRPELAGRISMVNSPREVIG 151
DP ++ PY WG I I W DLW+PE + + + REV
Sbjct: 119 FDPNND-YSVPYIWGATAIGVNSDAIDPKT---ITSWADLWKPEYKNSLLLTDDAREVFQ 174
Query: 152 SVLKYMGASYNSNN-IDLQVAGGKISVQQNLALLANQARLFDSTHYLKAFGIGDVWVAVG 210
L+ +G S N+ + +++ A + L L F+S + + G+V + +
Sbjct: 175 MALRKLGYSGNTTDPKEIEAA------YEELKKLMPNVAAFNSDNPANPYMEGEVNLGMV 228
Query: 211 WSSDVLPAVKRMSNVAVVVPKSGASLWADLWAIPAASR 248
W+ A + + + VV PK G W D AIPA ++
Sbjct: 229 WNGSAFVARQAGTPLEVVWPKEGGIFWMDSLAIPANAK 266
>sp|Q9KU25|NSPS_VIBCH Norspermidine sensor OS=Vibrio cholerae serotype O1 (strain ATCC
39315 / El Tor Inaba N16961) GN=nspS PE=3 SV=1
Length = 359
Score = 42.0 bits (97), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 69/154 (44%), Gaps = 15/154 (9%)
Query: 100 AAPYRWGTMVIAYKKSKFRKHNLAPIEDWKDLWR--PELAGRISMVNSPREVIGSVLKYM 157
A PY WG++ IAY+KS F K P W ++ P GR+ M+ E + L +
Sbjct: 127 AVPYFWGSVGIAYRKSLFDK----PPTQWSEVVDIAPAHRGRVGMLKDSVETLLPALYML 182
Query: 158 GASYNSNNIDLQVAGGKISVQQNLALLANQARLFDSTHYLKAFGIGD-VWVAVGWSSDVL 216
AS +++ID ++ N +L + L Y+++ D + +AV +S D
Sbjct: 183 NASPITDSIDTLRQAYRLLDAANPHILTYEYVL----SYVRSHPQTDNLHMAVSYSGDHY 238
Query: 217 PAVKRMSNVA---VVVPKSGASLWADLWAIPAAS 247
++ R N VP+ LW D A+ + S
Sbjct: 239 -SLNRFFNTQDWDFSVPEGRPYLWVDCMAVNSVS 271
>sp|P76108|YDCS_ECOLI Putative ABC transporter periplasmic-binding protein YdcS
OS=Escherichia coli (strain K12) GN=ydcS PE=3 SV=1
Length = 381
Score = 35.4 bits (80), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 51/211 (24%), Positives = 81/211 (38%), Gaps = 28/211 (13%)
Query: 43 DLVSV-GDSWLSFAIKKRLIEPIAGAEDQDWFKCLSHKWKVYLRRNDAGE-IDPRGKIWA 100
DLV+ GD+ L + KR ++PI A L WK R G+ + GK++
Sbjct: 89 DLVTASGDASLRLIMGKR-VQPINTA--------LIPNWKTLDPRVVKGDWFNVGGKVYG 139
Query: 101 APYRWGTMVIAYKKSKFRKHNLAPIEDWKDLWRPE-------LAGRISMVNSPREVIGSV 153
PY+WG ++ Y F P + W+ ++ + GR+ + P + +
Sbjct: 140 TPYQWGPNLLMYNTKTFP----TPPDSWQVVFVEQNLPDGKSNKGRVQAYDGPIYIADAA 195
Query: 154 LKYMGASYNSNNIDLQVAGGKISVQQNLALLANQARLF-----DSTHYLKAFGIGDVWVA 208
L ++ A+ I + Q L +L Q L D+T + F V +
Sbjct: 196 L-FVKATQPQLGISDPYQLTEEQYQAVLKVLRAQHSLIHRYWHDTTVQMSDFKNEGVVAS 254
Query: 209 VGWSSDVLPAVKRMSNVAVVVPKSGASLWAD 239
W VA V PK G + WAD
Sbjct: 255 SAWPYQANALKAEGQPVATVFPKEGVTGWAD 285
>sp|P82281|TL29_ARATH Thylakoid lumenal 29 kDa protein, chloroplastic OS=Arabidopsis
thaliana GN=TL29 PE=1 SV=2
Length = 349
Score = 34.3 bits (77), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 59/132 (44%), Gaps = 20/132 (15%)
Query: 8 LKFQMNLC-ASIDGIVNNLSVPFNKVK------AKSAPYMAADLVSV-GDSWLSFAIKKR 59
++F L A +G+ + LS+ +VK +K P AD++ + G S + F
Sbjct: 140 IRFSSELSRAENEGLSDGLSL-IEEVKKEIDSISKGGPISYADIIQLAGQSAVKFTYLAS 198
Query: 60 LIEPIAGAEDQDWFKCLSH----KWKVYLR---RNDAGEIDPRGKIWAAPYRWGTMVIAY 112
I G E++ ++ +W ++ R R+DA E DP G++ P +WG +
Sbjct: 199 AIRKCGGNEEKGNLLYTAYGSAGQWGLFDRNFGRSDATEADPEGRV---P-QWGKATVQE 254
Query: 113 KKSKFRKHNLAP 124
K KF L P
Sbjct: 255 MKDKFIAVGLGP 266
>sp|P0CO18|SWR1_CRYNJ Helicase SWR1 OS=Cryptococcus neoformans var. neoformans serotype D
(strain JEC21 / ATCC MYA-565) GN=SWR1 PE=3 SV=1
Length = 1246
Score = 33.5 bits (75), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 47/207 (22%), Positives = 80/207 (38%), Gaps = 37/207 (17%)
Query: 40 MAADLVSVGDSWLSFAIKKRLIEPIAGAEDQDWFKCLSHKWKVYLRRNDAGEIDPRGKIW 99
M DL S G L F R+++ + LSH YLR + + +I+ R ++
Sbjct: 946 MLRDLKSEGHRVLIFTQMTRVLDILE--------MFLSHNGHRYLRLDGSTKIEDR-QVL 996
Query: 100 AAPYRWGTMV---IAYKKSKFRKHNLAPIE-------DWKDLWRPELAGRISMVNSPREV 149
+ + + IA +S NL + DW + R + REV
Sbjct: 997 TERFNSDSRIFVFIASSRSGGVGINLTGADTVFFYDSDWNPSMDRQCMDRAHRIGQTREV 1056
Query: 150 IGSVLKYMGASYNSNNIDLQVAGGKISVQQNLALLANQARLFDSTHYLKAFGIGDVWVAV 209
+ +++ + +V++N+ A Q RL D + D W V
Sbjct: 1057 --HIYRFVSSH---------------TVEENMLRKAEQKRLLDKMVIQEGGFNNDWWGRV 1099
Query: 210 GWSSDVLPAVKRMSNVAVVVPKSGASL 236
GW D+ V +++V+ VV KSG +
Sbjct: 1100 GW-KDMFGDVPGITDVSGVVEKSGEGI 1125
>sp|P0CO19|SWR1_CRYNB Helicase SWR1 OS=Cryptococcus neoformans var. neoformans serotype D
(strain B-3501A) GN=SWR1 PE=3 SV=1
Length = 1246
Score = 33.5 bits (75), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 47/207 (22%), Positives = 80/207 (38%), Gaps = 37/207 (17%)
Query: 40 MAADLVSVGDSWLSFAIKKRLIEPIAGAEDQDWFKCLSHKWKVYLRRNDAGEIDPRGKIW 99
M DL S G L F R+++ + LSH YLR + + +I+ R ++
Sbjct: 946 MLRDLKSEGHRVLIFTQMTRVLDILE--------MFLSHNGHRYLRLDGSTKIEDR-QVL 996
Query: 100 AAPYRWGTMV---IAYKKSKFRKHNLAPIE-------DWKDLWRPELAGRISMVNSPREV 149
+ + + IA +S NL + DW + R + REV
Sbjct: 997 TERFNSDSRIFVFIASSRSGGVGINLTGADTVFFYDSDWNPSMDRQCMDRAHRIGQTREV 1056
Query: 150 IGSVLKYMGASYNSNNIDLQVAGGKISVQQNLALLANQARLFDSTHYLKAFGIGDVWVAV 209
+ +++ + +V++N+ A Q RL D + D W V
Sbjct: 1057 --HIYRFVSSH---------------TVEENMLRKAEQKRLLDKMVIQEGGFNNDWWGRV 1099
Query: 210 GWSSDVLPAVKRMSNVAVVVPKSGASL 236
GW D+ V +++V+ VV KSG +
Sbjct: 1100 GW-KDMFGDVPGITDVSGVVEKSGEGI 1125
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.134 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 141,929,006
Number of Sequences: 539616
Number of extensions: 5878634
Number of successful extensions: 12518
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 12501
Number of HSP's gapped (non-prelim): 14
length of query: 380
length of database: 191,569,459
effective HSP length: 119
effective length of query: 261
effective length of database: 127,355,155
effective search space: 33239695455
effective search space used: 33239695455
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (28.5 bits)