Query 016927
Match_columns 380
No_of_seqs 193 out of 2021
Neff 7.9
Searched_HMMs 46136
Date Fri Mar 29 04:04:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016927.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016927hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0687 PotD Spermidine/putres 100.0 5.1E-43 1.1E-47 345.2 28.6 283 29-352 71-361 (363)
2 PRK09501 potD spermidine/putre 100.0 6.3E-43 1.4E-47 342.7 28.7 296 7-352 51-346 (348)
3 PRK10682 putrescine transporte 100.0 6.6E-41 1.4E-45 331.0 29.2 302 7-352 54-368 (370)
4 PRK11622 hypothetical protein; 100.0 4.5E-27 9.7E-32 234.9 25.7 276 40-349 98-396 (401)
5 TIGR03227 PhnS 2-aminoethylpho 100.0 6.4E-27 1.4E-31 231.1 21.0 198 40-284 90-301 (367)
6 TIGR03261 phnS2 putative 2-ami 100.0 3.3E-26 7.2E-31 223.1 25.2 227 7-284 48-282 (334)
7 PF13343 SBP_bac_6: Bacterial 99.9 8.3E-27 1.8E-31 217.0 12.6 211 40-292 2-215 (242)
8 TIGR01276 thiB thiamine ABC tr 99.9 2.3E-25 4.9E-30 214.8 20.3 226 6-284 30-260 (309)
9 TIGR01254 sfuA ABC transporter 99.9 6.4E-25 1.4E-29 211.3 20.4 228 5-284 29-261 (304)
10 PF13416 SBP_bac_8: Bacterial 99.9 4.5E-25 9.7E-30 208.5 17.5 260 7-308 11-276 (281)
11 PRK11205 tbpA thiamine transpo 99.9 3.6E-24 7.8E-29 208.4 21.2 225 7-284 52-281 (330)
12 PRK15046 2-aminoethylphosphona 99.9 2E-22 4.4E-27 197.7 18.6 202 40-284 85-294 (349)
13 COG4143 TbpA ABC-type thiamine 99.8 9E-19 1.9E-23 164.3 16.9 245 7-307 55-304 (336)
14 TIGR03850 bind_CPR_0540 carboh 99.8 9.5E-18 2.1E-22 169.0 21.8 237 41-292 87-363 (437)
15 COG1840 AfuA ABC-type Fe3+ tra 99.8 7.7E-18 1.7E-22 161.9 19.8 227 6-284 9-245 (299)
16 PRK09474 malE maltose ABC tran 99.8 4.7E-17 1E-21 161.8 19.4 218 41-284 82-322 (396)
17 TIGR03851 chitin_NgcE carbohyd 99.7 1.8E-16 3.9E-21 160.6 19.8 224 41-284 93-363 (450)
18 PRK10974 glycerol-3-phosphate 99.7 6.2E-16 1.3E-20 156.2 20.6 263 4-289 52-348 (438)
19 COG1653 UgpB ABC-type sugar tr 99.6 2.7E-15 5.9E-20 149.3 15.7 252 5-283 59-346 (433)
20 COG2182 MalE Maltose-binding p 99.6 5.8E-15 1.3E-19 146.1 16.3 219 39-284 92-337 (420)
21 COG4134 ABC-type uncharacteriz 99.6 2.1E-14 4.6E-19 135.0 16.2 248 32-307 84-347 (384)
22 PF01547 SBP_bac_1: Bacterial 99.6 1.2E-15 2.6E-20 145.2 7.5 243 5-279 22-315 (315)
23 TIGR00971 3a0106s03 sulfate/th 99.6 2.9E-13 6.4E-18 131.0 19.7 213 5-284 41-266 (315)
24 TIGR01256 modA molybdenum ABC 99.6 1E-13 2.2E-18 126.7 15.0 188 7-283 20-214 (216)
25 PRK10852 thiosulfate transport 99.5 5.1E-13 1.1E-17 130.2 19.0 208 5-284 57-283 (338)
26 PRK10752 sulfate transporter s 99.5 1E-12 2.2E-17 127.6 18.6 215 5-284 52-277 (329)
27 PF13531 SBP_bac_11: Bacterial 99.3 2.2E-10 4.7E-15 105.6 17.3 194 6-283 24-226 (230)
28 PRK10677 modA molybdate transp 99.1 7.8E-09 1.7E-13 97.4 17.2 144 102-283 103-251 (257)
29 PF02030 Lipoprotein_8: Hypoth 99.0 2.2E-09 4.8E-14 106.8 12.8 240 10-274 51-335 (493)
30 COG1613 Sbp ABC-type sulfate t 98.9 6.7E-08 1.4E-12 90.2 17.2 221 4-292 67-299 (348)
31 PRK03537 molybdate ABC transpo 98.6 1.2E-06 2.6E-11 78.6 13.4 158 101-290 17-184 (188)
32 PRK04168 molybdate ABC transpo 98.5 6.2E-06 1.3E-10 80.6 18.4 92 194-307 212-332 (334)
33 COG0725 ModA ABC-type molybdat 98.3 3.7E-05 8E-10 72.4 16.0 145 99-283 103-251 (258)
34 COG4150 CysP ABC-type sulfate 98.0 1.9E-05 4.2E-10 71.9 6.7 211 5-284 62-288 (341)
35 TIGR03730 tungstate_WtpA tungs 97.4 0.0045 9.8E-08 58.8 14.4 66 194-272 185-273 (273)
36 COG4588 AcfC Accessory coloniz 92.2 0.47 1E-05 42.6 6.6 89 178-283 155-247 (252)
37 TIGR01729 taurine_ABC_bnd taur 69.3 1E+02 0.0022 29.0 15.0 70 193-275 136-209 (300)
38 PF12727 PBP_like: PBP superfa 62.6 76 0.0016 28.3 9.6 124 99-272 62-192 (193)
39 PRK11063 metQ DL-methionine tr 61.1 30 0.00065 32.7 7.1 79 192-284 183-262 (271)
40 TIGR00363 lipoprotein, YaeC fa 57.4 36 0.00079 32.0 6.9 81 192-285 170-250 (258)
41 PF03401 TctC: Tripartite tric 46.5 2.6E+02 0.0055 26.3 11.1 34 102-142 74-109 (274)
42 PF09084 NMT1: NMT1/THI5 like; 46.0 2.1E+02 0.0045 25.1 14.2 122 107-274 74-204 (216)
43 PRK11553 alkanesulfonate trans 42.6 2.2E+02 0.0049 26.9 10.0 69 193-274 165-235 (314)
44 PRK11119 proX glycine betaine 39.7 3.7E+02 0.008 26.2 12.0 34 195-228 193-227 (331)
45 PF13379 NMT1_2: NMT1-like fam 35.6 3.4E+02 0.0075 24.7 13.4 134 104-274 88-231 (252)
46 PF07637 PSD5: Protein of unkn 32.9 97 0.0021 22.3 4.4 41 331-371 15-55 (64)
47 COG2998 TupB ABC-type tungstat 32.2 72 0.0016 29.5 4.3 74 199-283 185-260 (280)
48 PRK10797 glutamate and asparta 27.7 5.3E+02 0.012 24.4 11.7 27 98-131 125-151 (302)
49 cd00134 PBPb Bacterial peripla 27.5 2.1E+02 0.0045 24.1 6.5 67 194-274 136-203 (218)
50 PRK09861 cytoplasmic membrane 26.1 2.2E+02 0.0047 26.9 6.7 80 192-284 184-263 (272)
51 PF03202 Lipoprotein_10: Putat 25.5 65 0.0014 27.2 2.7 26 239-276 7-32 (135)
52 smart00062 PBPb Bacterial peri 23.2 2.3E+02 0.005 23.7 6.0 53 194-247 137-191 (219)
No 1
>COG0687 PotD Spermidine/putrescine-binding periplasmic protein [Amino acid transport and metabolism]
Probab=100.00 E-value=5.1e-43 Score=345.25 Aligned_cols=283 Identities=28% Similarity=0.462 Sum_probs=242.7
Q ss_pred hhHhhcCCCCCCCccEEEeCcHHHHHHHHcCcccccccCCCccccCCCChhhHHHHhhhCCCccCCCCCEEEeeccccee
Q 016927 29 FNKVKAKSAPYMAADLVSVGDSWLSFAIKKRLIEPIAGAEDQDWFKCLSHKWKVYLRRNDAGEIDPRGKIWAAPYRWGTM 108 (380)
Q Consensus 29 ~~kl~ag~~~~~~~Dvv~~~~~~~~~~~~~gll~pld~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~Y~vP~~~~~~ 108 (380)
++|+++|+. .||||+++..++.+++++|+|+|||.+ +++|++++++.++.. ..+|+ |+.|+|||.||++
T Consensus 71 ~ak~~~g~~---~~Dvv~~s~~~~~~~~~~gll~~lD~s----kl~n~~~l~~~~~~~---~~~d~-g~~y~vPy~~g~t 139 (363)
T COG0687 71 LAKLKAGGG---GYDVVVPSGYFVARLIKEGLLQPLDKS----KLPNWKNLDPEFLNP---PKFDP-GNKYSVPYFWGTT 139 (363)
T ss_pred HHHHHcCCC---CceEEEeCHHHHHHHHHcCCcccCChh----hCcCccccCHHHhcc---ccCCC-CCEeeeeEEeeee
Confidence 356788876 399999999999999999999999976 588888888877753 12565 7889999999999
Q ss_pred EEEEeccccccCCCCCCCCHHHhcCcc----ccCc-eeeecChhHHHHHHHHHcCCCCCCCChhhhhccchHHHHHHHHH
Q 016927 109 VIAYKKSKFRKHNLAPIEDWKDLWRPE----LAGR-ISMVNSPREVIGSVLKYMGASYNSNNIDLQVAGGKISVQQNLAL 183 (380)
Q Consensus 109 gi~Yn~d~~~~~g~~~p~sW~dL~~~~----~~gk-i~~~~~~~~~~~~al~~~G~~~~~~~~~~~~~~~~~~~~~~L~~ 183 (380)
+|+||+++++. ..+|+||++||+++ ++|+ +.+.+++++.+..++.++|.++|..+++. ++++++.|.+
T Consensus 140 ~i~Yn~~~~~~--~~~~~sW~~l~d~~~~~~~k~~~~~~~d~~~~~~~~al~~lg~~~n~~~~~~-----~~~a~~~L~~ 212 (363)
T COG0687 140 GIAYNTDKVKD--APPPTSWADLFDPEKFPGLKGKGVALLDDDREVFGAALALLGKSPNTTDPED-----LKKAFDLLDK 212 (363)
T ss_pred EEEEeccccCC--CCCCccHHHHhCchhhHHHhCCceEEecChHHHHHHHHHHcCCCCCCCCHHH-----HHHHHHHHHH
Confidence 99999999981 13789999999987 7887 88999999999999999999987777652 6799999999
Q ss_pred Hhh-hcccccchhHHHHhHcCCEEEEEechhcHHHHH--HcCCCcEEEccCCCccceeeeEEEeCCCCCcccccCCCCCC
Q 016927 184 LAN-QARLFDSTHYLKAFGIGDVWVAVGWSSDVLPAV--KRMSNVAVVVPKSGASLWADLWAIPAASRLETKQIGGRVRG 260 (380)
Q Consensus 184 l~~-~v~~~~~~~~~~~~~~Gev~~~~~~s~~~~~~~--~~~~~i~~~~P~eG~~~~~d~~~I~k~s~~~~~~~~~~~~~ 260 (380)
+++ ++..++++++.+.|++|+++|+++|+|++..++ +.+.++++++|+||+.+|+|+|+|||+++|++
T Consensus 213 ~kp~~~~~~~~~~~~~~l~~Gev~~a~~w~g~~~~~~~~~~~~~i~~~~p~eG~~~w~D~~~ipk~a~n~~--------- 283 (363)
T COG0687 213 LKPVNVYWFDGSQYVQLLANGEVVLAMGWSGDAAAAKAAKNGAPIEFVIPKEGSILWFDNLAIPKGAKNVD--------- 283 (363)
T ss_pred hCcccEEEecchHHHHHHhcCCEEEEEEeChHHHHHHHhhcCCceEEEcCCCCceeeeEeeeeeCCCCCHH---------
Confidence 999 666677889999999999999999999999885 57778999999999999999999999999998
Q ss_pred ChHHHHHHHHHHhhHHhhchhhhhhcCCCCCCccccccccCChhHhcCCCCCCCccccCCCCHHHHhhcccccCCCHHHH
Q 016927 261 PSPLIHQWIEFCLQTARALPFKQEVIPGASPSALETTLVKLPEELLKGKPSQDTNLIVGVPPAEILARCEFLEPLSEATL 340 (380)
Q Consensus 261 ~~~~A~~fi~fllspe~~~~~~~~~~~~~~p~~~~~a~~~l~~e~~~~~p~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~ 340 (380)
+|++||||+++||+|+.+++. .+|++|+ ..+...+++++..++ .++|+.+.+.+......+.++..
T Consensus 284 ---~A~~fInf~~~pe~~a~~~~~-~~y~~~n--~~a~~~~~~~~~~~~--------~~~p~~~~~~~~~~~~~~~~~~~ 349 (363)
T COG0687 284 ---AAYKFINFLLDPEVAAKLAEF-VGYAPPN--KAARKLLPKEIKDDP--------AIYPTAEILKKLFGQKDLGPEAL 349 (363)
T ss_pred ---HHHHHHHHhhCHHHHHHHHHh-ccCCCCC--HHHHHhCcHhhhcCc--------ccCCCHHHhhcccchhhccHHHH
Confidence 999999999999999999976 6777776 455556777666543 35888888888888888877778
Q ss_pred HHHHHHHHHhcC
Q 016927 341 SDYEWLVADLQK 352 (380)
Q Consensus 341 ~~~~~~w~~~~~ 352 (380)
+.|++.|+++++
T Consensus 350 ~~~~~~~~~~~~ 361 (363)
T COG0687 350 RLYTKAWQEIKA 361 (363)
T ss_pred HHHHHHHHHHhc
Confidence 999999999875
No 2
>PRK09501 potD spermidine/putrescine ABC transporter periplasmic substrate-binding protein; Reviewed
Probab=100.00 E-value=6.3e-43 Score=342.72 Aligned_cols=296 Identities=23% Similarity=0.344 Sum_probs=249.0
Q ss_pred ceEEEEEEcccHHHHHHhcccchhHhhcCCCCCCCccEEEeCcHHHHHHHHcCcccccccCCCccccCCCChhhHHHHhh
Q 016927 7 RLKFQMNLCASIDGIVNNLSVPFNKVKAKSAPYMAADLVSVGDSWLSFAIKKRLIEPIAGAEDQDWFKCLSHKWKVYLRR 86 (380)
Q Consensus 7 ~v~v~~~~~gs~~~~~~~~~~~~~kl~ag~~~~~~~Dvv~~~~~~~~~~~~~gll~pld~~~~~~~~~~~~~~~~~~~~~ 86 (380)
+++|+..+.++.++++++ |++++. ..+||+++++.++.+++++|+|+|||.+ .+++++++.+.+.+
T Consensus 51 gi~V~~~~~~s~~~~~~k-------l~a~~~--~~~Dvv~~~~~~~~~~~~~gll~~ld~~----~~~~~~~i~~~~~~- 116 (348)
T PRK09501 51 GIKVIYSTYESNETMYAK-------LKTYKD--GAYDLVVPSTYYVDKMRKEGMIQKIDKS----KLTNFSNLDPDMLN- 116 (348)
T ss_pred CCeEEEEecCCHHHHHHH-------HhcCCC--CCceEEEeCHHHHHHHHHCCCcccCChh----hCcChhhCCHHHhc-
Confidence 466666666666666655 777543 2699999998889999999999999864 35677777666643
Q ss_pred hCCCccCCCCCEEEeecccceeEEEEeccccccCCCCCCCCHHHhcCccccCceeeecChhHHHHHHHHHcCCCCCCCCh
Q 016927 87 NDAGEIDPRGKIWAAPYRWGTMVIAYKKSKFRKHNLAPIEDWKDLWRPELAGRISMVNSPREVIGSVLKYMGASYNSNNI 166 (380)
Q Consensus 87 ~~~~~~d~~g~~Y~vP~~~~~~gi~Yn~d~~~~~g~~~p~sW~dL~~~~~~gki~~~~~~~~~~~~al~~~G~~~~~~~~ 166 (380)
..+++ |+.|++||.+++++|+||++++++ .+|+||+|||+|+++|+|++.+.+.+.+..++.+.|.+.+..++
T Consensus 117 ---~~~~~-~~~y~vP~~~~~~~i~YN~d~v~~---~~~~sw~dL~~p~~~g~i~~~~~~~~~~~~al~~~G~~~~~~~~ 189 (348)
T PRK09501 117 ---KPFDP-NNDYSIPYIWGATAIGVNSDAIDP---KSVTSWADLWKPEYKGSLLLTDDAREVFQMALRKLGYSGNTTDP 189 (348)
T ss_pred ---CCCCC-CCceEeeeeccceEEEEcHHHcCC---CCCCCHHHHhCHHHcCCeEEeCCHHHHHHHHHHHcCCCCCCCCH
Confidence 23555 557999999999999999999975 37899999999999999999998888888888888987766655
Q ss_pred hhhhccchHHHHHHHHHHhhhcccccchhHHHHhHcCCEEEEEechhcHHHHHHcCCCcEEEccCCCccceeeeEEEeCC
Q 016927 167 DLQVAGGKISVQQNLALLANQARLFDSTHYLKAFGIGDVWVAVGWSSDVLPAVKRMSNVAVVVPKSGASLWADLWAIPAA 246 (380)
Q Consensus 167 ~~~~~~~~~~~~~~L~~l~~~v~~~~~~~~~~~~~~Gev~~~~~~s~~~~~~~~~~~~i~~~~P~eG~~~~~d~~~I~k~ 246 (380)
+ .++++++.|.++++++..|+.+...+.|.+|+++++++|+++....++.+.++++++|+||+..|+++++|+|+
T Consensus 190 ~-----~~~~a~~~l~~l~~~v~~~~~~~~~~~l~~Gev~i~~~w~~~~~~~~~~g~~i~~~~P~eG~~~~~~~~~i~k~ 264 (348)
T PRK09501 190 K-----EIEAAYNELKKLMPNVAAFNSDNPANPYMEGEVNLGMIWNGSAFVARQAGTPIDVVWPKEGGIFWMDSLAIPAN 264 (348)
T ss_pred H-----HHHHHHHHHHHhhhhhEEEcCcHHHHHHHcCCEEEEEeehHHHHHHHhcCCCceEEecCCCcceEEEeeeEECC
Confidence 4 25678899999999998887666778999999999999999988888888899999999999999999999999
Q ss_pred CCCcccccCCCCCCChHHHHHHHHHHhhHHhhchhhhhhcCCCCCCccccccccCChhHhcCCCCCCCccccCCCCHHHH
Q 016927 247 SRLETKQIGGRVRGPSPLIHQWIEFCLQTARALPFKQEVIPGASPSALETTLVKLPEELLKGKPSQDTNLIVGVPPAEIL 326 (380)
Q Consensus 247 s~~~~~~~~~~~~~~~~~A~~fi~fllspe~~~~~~~~~~~~~~p~~~~~a~~~l~~e~~~~~p~~~~~l~~~~p~~~~~ 326 (380)
++|++ +|++||||+++||+|+.+++. .+|.+|+ ..+...||+++++++ .+||+.+.+
T Consensus 265 a~n~e------------~A~~Fi~~llspe~q~~~~~~-~~~~~~n--~~a~~~l~~~~~~~~--------~~~~~~~~~ 321 (348)
T PRK09501 265 AKNKE------------GALKLINFLLRPDVAKQVAET-IGYPTPN--LAARKLLSPEVANDK--------SLYPDAETI 321 (348)
T ss_pred CCCHH------------HHHHHHHHHhCHHHHHHHHHH-hCCCChh--HHHHHhCCHHHhcCC--------CcCcCHHHH
Confidence 99998 999999999999999998875 5666665 577889999998754 369999999
Q ss_pred hhcccccCCCHHHHHHHHHHHHHhcC
Q 016927 327 ARCEFLEPLSEATLSDYEWLVADLQK 352 (380)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~w~~~~~ 352 (380)
.+++++.++++ ..+.++++|+++|+
T Consensus 322 ~~~~~~~~~~~-~~~~~~~~w~~~~~ 346 (348)
T PRK09501 322 KKGEWQNDVGA-ASSIYEEYYQKLKA 346 (348)
T ss_pred hccEEecCCCH-HHHHHHHHHHHHhc
Confidence 99999999986 46889999999996
No 3
>PRK10682 putrescine transporter subunit: periplasmic-binding component of ABC superfamily; Provisional
Probab=100.00 E-value=6.6e-41 Score=331.04 Aligned_cols=302 Identities=24% Similarity=0.371 Sum_probs=244.4
Q ss_pred ceEEEEEEcccHHHHHHhcccchhHhhcCCCCCCCccEEEeCcHHHHHHHHcCcccccccCCCccccCCCChhhHHHHhh
Q 016927 7 RLKFQMNLCASIDGIVNNLSVPFNKVKAKSAPYMAADLVSVGDSWLSFAIKKRLIEPIAGAEDQDWFKCLSHKWKVYLRR 86 (380)
Q Consensus 7 ~v~v~~~~~gs~~~~~~~~~~~~~kl~ag~~~~~~~Dvv~~~~~~~~~~~~~gll~pld~~~~~~~~~~~~~~~~~~~~~ 86 (380)
+++|+.+..++.+++.+ ||++++. .|||+.++..++.+++++|+|+|||.+ .+++++++.+.+.+.
T Consensus 54 gi~V~~~~~~~~~~~~~-------kl~a~~~---~~Dvv~~~~~~~~~~~~~gll~~ld~~----~~~~~~~~~~~~~~~ 119 (370)
T PRK10682 54 GIKVVYDVFDSNEVLEG-------KLMAGST---GFDLVVPSASFLERQLTAGVFQPLDKS----KLPNWKNLDPELLKL 119 (370)
T ss_pred CCEEEEEecCCHHHHHH-------HHHcCCC---CCcEEEECHHHHHHHHHCCCcccCChh----hCcChhhCCHHHHhc
Confidence 56666666666666554 4676544 699999999999999999999999975 356666666655432
Q ss_pred hCCCccCCCCCEEEeecccceeEEEEeccccccC-CCC-CCCCHHHhcCccccCc-----eeeecChhHHHHHHHHHcCC
Q 016927 87 NDAGEIDPRGKIWAAPYRWGTMVIAYKKSKFRKH-NLA-PIEDWKDLWRPELAGR-----ISMVNSPREVIGSVLKYMGA 159 (380)
Q Consensus 87 ~~~~~~d~~g~~Y~vP~~~~~~gi~Yn~d~~~~~-g~~-~p~sW~dL~~~~~~gk-----i~~~~~~~~~~~~al~~~G~ 159 (380)
. ..+|+ |+.||+||.+++++|+||++++++. |+. +|+||++|++|++.++ +++.+.+.+.+..++.+.|.
T Consensus 120 ~--~~~~~-g~~y~vP~~~~~~~l~YN~~~~~~~~G~~~pp~sW~dl~~p~~~~~l~~~g~~~~~~~~~~~~~~l~~~G~ 196 (370)
T PRK10682 120 V--AKHDP-DNKYAMPYMWATTGIGYNVDKVKAVLGEDAPVDSWDLVLKPENLEKLKSCGVSFLDAPEEIFATVLNYLGK 196 (370)
T ss_pred c--ccCCC-CCeEeeeeEecceEEEEehHHhcccccCCCCCCCHHHHhCchhhhhhcCCeEEEeCCHHHHHHHHHHHcCC
Confidence 1 12454 6689999999999999999999864 654 6799999999865543 77888888888888889998
Q ss_pred CCCCCChhhhhccchHHHHHHHHHHhhhcccccchhHHHHhHcCCEEEEEechhcHHHHH------HcCCCcEEEccCCC
Q 016927 160 SYNSNNIDLQVAGGKISVQQNLALLANQARLFDSTHYLKAFGIGDVWVAVGWSSDVLPAV------KRMSNVAVVVPKSG 233 (380)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~L~~l~~~v~~~~~~~~~~~~~~Gev~~~~~~s~~~~~~~------~~~~~i~~~~P~eG 233 (380)
++++.++. ++ .+++++.|.++++++..|++++..+.|.+|+++|+++|++++..++ +.+.++++++|+||
T Consensus 197 ~~~~~~~~-~~---~~~a~~~l~~l~~~v~~~~~~~~~~~l~~Gev~~~~~w~~~~~~~~~~~~~~~~~~~i~~v~P~eG 272 (370)
T PRK10682 197 DPNSTKAD-DY---TGPATDLLLKLRPNIRYFHSSQYINDLANGDICVAIGWAGDVWQASNRAKEAKNGVNVSYSIPKEG 272 (370)
T ss_pred CCCCCCHH-HH---HHHHHHHHHHhchhhEEEcCcHHHHHHhcCCEEEEEeecHHHHHHHHHHHhcccCCceEEEECCCc
Confidence 87765553 11 1368899999999887776666778999999999999999887553 34678999999999
Q ss_pred ccceeeeEEEeCCCCCcccccCCCCCCChHHHHHHHHHHhhHHhhchhhhhhcCCCCCCccccccccCChhHhcCCCCCC
Q 016927 234 ASLWADLWAIPAASRLETKQIGGRVRGPSPLIHQWIEFCLQTARALPFKQEVIPGASPSALETTLVKLPEELLKGKPSQD 313 (380)
Q Consensus 234 ~~~~~d~~~I~k~s~~~~~~~~~~~~~~~~~A~~fi~fllspe~~~~~~~~~~~~~~p~~~~~a~~~l~~e~~~~~p~~~ 313 (380)
+..|+++++|+|+++|++ +|++||||+++||+|+.+++. .+|++++ ..+...+++++++++
T Consensus 273 ~~~~~d~~~I~k~a~~~e------------~A~~Fi~f~lspe~qa~~a~~-~~y~p~~--~~a~~~~~~~~~~~p---- 333 (370)
T PRK10682 273 ALAFFDVFAMPADAKNKD------------EAYQFLNYLLRPDVIAHISDH-VFYANAN--KAATPLVSAEVRDNP---- 333 (370)
T ss_pred chhheeeeEEECCCCCHH------------HHHHHHHHHhCHHHHHHHHHH-hCCCCcc--HHHHHhcCHHHhcCC----
Confidence 999999999999999998 999999999999999999976 6777765 466667999988754
Q ss_pred CccccCCCCHHHHhhcccccCCCHHHHHHHHHHHHHhcC
Q 016927 314 TNLIVGVPPAEILARCEFLEPLSEATLSDYEWLVADLQK 352 (380)
Q Consensus 314 ~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~ 352 (380)
.++|+.+.+.++++++.++++.++.++++|+++|+
T Consensus 334 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~ 368 (370)
T PRK10682 334 ----GIYPPADVRAKLFTLKVQDPKIDRVRTRAWTKVKS 368 (370)
T ss_pred ----CcCCCHHHHhCcEEecCCCHHHHHHHHHHHHHHHc
Confidence 36899999999999999998888899999999996
No 4
>PRK11622 hypothetical protein; Provisional
Probab=99.96 E-value=4.5e-27 Score=234.85 Aligned_cols=276 Identities=14% Similarity=0.087 Sum_probs=183.2
Q ss_pred CCccEEEeCcHHHHHHHHcCcccccccCCCccccCCCChhhH--HHHhhhCCCccCCCCCEEEeecccceeEEEEecccc
Q 016927 40 MAADLVSVGDSWLSFAIKKRLIEPIAGAEDQDWFKCLSHKWK--VYLRRNDAGEIDPRGKIWAAPYRWGTMVIAYKKSKF 117 (380)
Q Consensus 40 ~~~Dvv~~~~~~~~~~~~~gll~pld~~~~~~~~~~~~~~~~--~~~~~~~~~~~d~~g~~Y~vP~~~~~~gi~Yn~d~~ 117 (380)
+.+||++++...+..+.++|+|++...+ .++++..... ... ..|...++.|++||.+++.+|+||+++|
T Consensus 98 ~~~Dvv~~~~~~~~~~~~~gll~~~~~~----~lp~~~~~~~~~~~~-----~~~~~~~~~y~~P~~~~~~~l~YN~d~~ 168 (401)
T PRK11622 98 GSVDLVWINGENFRTLKEAGLLYGPFAE----TLPNWRYVDTSLPVR-----EDFGVPTEGLEAPWGGAQLVFIYDSART 168 (401)
T ss_pred CCCeEEEECchhHHHHHHCCCccCchhh----hCcCchhcccchhhh-----hhccccCCceEeeccCCeEEEEEchHhc
Confidence 3699999988888899999999753222 3555543221 010 0122223459999999999999999999
Q ss_pred ccCCCCCCCCHHHhcC--ccccCceeeecCh---hHHHH-HHHH-HcCCCC--CC-CChhhhhccchHHHHHHHHHHhhh
Q 016927 118 RKHNLAPIEDWKDLWR--PELAGRISMVNSP---REVIG-SVLK-YMGASY--NS-NNIDLQVAGGKISVQQNLALLANQ 187 (380)
Q Consensus 118 ~~~g~~~p~sW~dL~~--~~~~gki~~~~~~---~~~~~-~al~-~~G~~~--~~-~~~~~~~~~~~~~~~~~L~~l~~~ 187 (380)
++ +|+||+||++ ++++||+++.+.+ ...+. .++. ..|... .. .+.+ .+....+.++++|.+|+++
T Consensus 169 ~~----~P~Sw~dL~~~~~~~~Gk~~~~~p~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~L~~L~~~ 243 (401)
T PRK11622 169 PQ----PPQSPAELLEWAKANPGRFTYPRPPDFTGTAFLKQLLYELTGDPAALKQPVDKA-TFARVTAPLWDYLDELHPY 243 (401)
T ss_pred CC----CCCCHHHHHHHHHHCCCcEecCCCCCCchhHHHHHHHHHhcCChHhhcCCCCHH-HHHHhhhHHHHHHHHhCHH
Confidence 86 8999999998 6899999997532 11121 1222 223321 11 1111 1112256788999999987
Q ss_pred c----cccc--chhHHHHhHcCCEEEEEechhc-HHHHHHcCC---CcEEEccCCCccceeeeEEEeCCCCCcccccCCC
Q 016927 188 A----RLFD--STHYLKAFGIGDVWVAVGWSSD-VLPAVKRMS---NVAVVVPKSGASLWADLWAIPAASRLETKQIGGR 257 (380)
Q Consensus 188 v----~~~~--~~~~~~~~~~Gev~~~~~~s~~-~~~~~~~~~---~i~~~~P~eG~~~~~d~~~I~k~s~~~~~~~~~~ 257 (380)
+ ..|. ..+..++|.+||++|++.|++. +...+.++. ++++++|++|+..++++++||++++|++
T Consensus 244 ~~~~g~~~~~~~~~~~~~~~~GEv~~~~~~~~~~~~~~~~~g~~p~~~~~~~~~~G~~~~~~~~~Ipk~a~n~~------ 317 (401)
T PRK11622 244 LWREGKTFPASPAELDQLLADGELDLAMTFNPNHAQSKIANGELPASTRSFVFDDGTIGNTHFVAIPFNANAKA------ 317 (401)
T ss_pred HHhccccCCCChHHHHHHHHCCCeEEEEecChHHHHHHHhcCCCCCceeEEcCCCCeeccceeEEeeCCCCCHH------
Confidence 6 3453 3467889999999999999874 444455552 5788889999999999999999999998
Q ss_pred CCCChHHHHHHHHHHhhHHhhchhhhh-hcCCCCCCccccccccCChhHhcCCCCCCCccccCCCCHHHHhhcccccCCC
Q 016927 258 VRGPSPLIHQWIEFCLQTARALPFKQE-VIPGASPSALETTLVKLPEELLKGKPSQDTNLIVGVPPAEILARCEFLEPLS 336 (380)
Q Consensus 258 ~~~~~~~A~~fi~fllspe~~~~~~~~-~~~~~~p~~~~~a~~~l~~e~~~~~p~~~~~l~~~~p~~~~~~~~~~~~~~~ 336 (380)
+|++||||++|||.|..+++. .+++ .|. .....||++.+++-...++.- ..+ +++.+.+.. ..+.
T Consensus 318 ------~A~~finfllS~e~Q~~~~~~~~~g~-~P~---~~~~~l~~e~~~~~~~~~~~~-~~~-~~~~~~~~~--~~~~ 383 (401)
T PRK11622 318 ------GAKVVANFLLSPEAQLRKADPAVWGD-PSV---LDPQKLPEEQRAAFAALDLGA-ATL-QPELLPPAL--PEPH 383 (401)
T ss_pred ------HHHHHHHHHcCHHHHHHhcchhhcCC-CCc---CChhhCCHHHHHHHhcccccc-ccC-ChhHhcccC--CCCC
Confidence 999999999999999998863 1343 343 224489999875211000000 112 455555543 2334
Q ss_pred HHHHHHHHHHHHH
Q 016927 337 EATLSDYEWLVAD 349 (380)
Q Consensus 337 ~~~~~~~~~~w~~ 349 (380)
.+...++.+.|++
T Consensus 384 ~~~~~~~~~~w~~ 396 (401)
T PRK11622 384 ASWVEALEQEWQR 396 (401)
T ss_pred hHHHHHHHHHHHH
Confidence 5566677777754
No 5
>TIGR03227 PhnS 2-aminoethylphosphonate ABC transporter, periplasmic 2-aminoethylphosphonate binding protein. This ABC transporter periplasmic substrate binding protein component is found in a region of the salmonella typhimurium LT2 genome responsible for the catabolism of 2-aminoethylphosphonate via the phnWX pathway (GenProp0238). The protein contains a match to pfam01547 for the "Bacterial extracellular solute-binding protein" domain.
Probab=99.95 E-value=6.4e-27 Score=231.12 Aligned_cols=198 Identities=15% Similarity=0.203 Sum_probs=148.6
Q ss_pred CCccEEEeCcHHHHHHHHcCcccccccCCCccccCCCChhhHHHHhhhCCCccCCCCCEEEeecccceeEEEEecccccc
Q 016927 40 MAADLVSVGDSWLSFAIKKRLIEPIAGAEDQDWFKCLSHKWKVYLRRNDAGEIDPRGKIWAAPYRWGTMVIAYKKSKFRK 119 (380)
Q Consensus 40 ~~~Dvv~~~~~~~~~~~~~gll~pld~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~Y~vP~~~~~~gi~Yn~d~~~~ 119 (380)
+.+||++.++..+.++.++|+|+|++.. .++++.+.. .+++| .| .|+.+++.+|+||++++++
T Consensus 90 ~~~DVv~~~~~~~~~~~~~Gll~~~~~~----~~~~~~~~~-----------~~~~g-~~-~p~~~~~~~i~YN~d~~~~ 152 (367)
T TIGR03227 90 PKADVIVTAPPFIQQAAAEGLLANFNSD----AAKAIPAIA-----------KAADG-LW-APFVKNYFSFAINPKLLKS 152 (367)
T ss_pred CCCCEEEeCcHHHHHHHHCCCccCCCCc----ccccCchhh-----------cCCCC-eE-EEEeeceeEEEEchhhcCC
Confidence 4799999988888999999999999864 344554321 13334 35 5999999999999999975
Q ss_pred CCCCCCCCHHHhcCccccCceeeecChhHHHHHH-----HHHcCCCCCCCChhhhhccchHHHHHHHHHHhhhcccccc-
Q 016927 120 HNLAPIEDWKDLWRPELAGRISMVNSPREVIGSV-----LKYMGASYNSNNIDLQVAGGKISVQQNLALLANQARLFDS- 193 (380)
Q Consensus 120 ~g~~~p~sW~dL~~~~~~gki~~~~~~~~~~~~a-----l~~~G~~~~~~~~~~~~~~~~~~~~~~L~~l~~~v~~~~~- 193 (380)
+|+||+|||+|+|+|+|++.+......+.. +...|. .++++++|.+|++++..+..
T Consensus 153 ----~P~sw~DL~~p~~~Gki~~~~p~~s~~~~~~l~~~~~~~G~--------------~d~a~~~l~~l~~n~~~~~~~ 214 (367)
T TIGR03227 153 ----APASFADLLDADFKGKLAYSNPAQAADGMAVIILAFALFGS--------------EDAAFAYLAKLEANNKFHSAG 214 (367)
T ss_pred ----CCCCHHHHhChhccCCEeecCCCcCccHHHHHHHHHHHcCC--------------chHHHHHHHHHHhcCCccCCC
Confidence 899999999999999999987443222211 112231 12568899999998876642
Q ss_pred -hhHHHHhHcCCEEEEEechhc-HHHHHHcCCCcEEEccCCC------ccceeeeEEEeCCCCCcccccCCCCCCChHHH
Q 016927 194 -THYLKAFGIGDVWVAVGWSSD-VLPAVKRMSNVAVVVPKSG------ASLWADLWAIPAASRLETKQIGGRVRGPSPLI 265 (380)
Q Consensus 194 -~~~~~~~~~Gev~~~~~~s~~-~~~~~~~~~~i~~~~P~eG------~~~~~d~~~I~k~s~~~~~~~~~~~~~~~~~A 265 (380)
....++|.+|+++++.++... .....+.+.++++++|++| +..+..+++|+++++|++ +|
T Consensus 215 ~~~~~~~~~~Gev~i~~g~~~~~~~~~~~~g~~i~~~~P~~g~g~~~~~~~~~~~~~I~k~a~n~e------------~A 282 (367)
T TIGR03227 215 TGKLNALLNKGEIAVANGDLQMDLADAEHGGLNIKIFFPAADAGEPPSAFAIPYAIGLVKGAPNQD------------AG 282 (367)
T ss_pred chhHHHHHhcCceEEEccHHHHHHHHHHhcCCCeEEEeecCCCCCCCcccccceeEEEecCCCCHH------------HH
Confidence 355678999999987553332 2233445679999999875 345568899999999998 99
Q ss_pred HHHHHHHhhHHhhchhhhh
Q 016927 266 HQWIEFCLQTARALPFKQE 284 (380)
Q Consensus 266 ~~fi~fllspe~~~~~~~~ 284 (380)
++||||++|||.|..+++.
T Consensus 283 ~~Fidfllspe~Q~~~a~~ 301 (367)
T TIGR03227 283 KKLIDFLLSADAQAKVPDL 301 (367)
T ss_pred HHHHHHHcCHHHHHHHHhc
Confidence 9999999999999999864
No 6
>TIGR03261 phnS2 putative 2-aminoethylphosphonate ABC transporter, periplasmic 2-aminoethylphosphonate-binding protein. This ABC transporter extracellular solute-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=99.95 E-value=3.3e-26 Score=223.11 Aligned_cols=227 Identities=19% Similarity=0.237 Sum_probs=170.8
Q ss_pred ceEEEEEEcccHHHHHHhcccchhHhhcCCCCCCCccEEEeC-cHHHHHHHHcCcccccccCCCccccCCCChhhHHHHh
Q 016927 7 RLKFQMNLCASIDGIVNNLSVPFNKVKAKSAPYMAADLVSVG-DSWLSFAIKKRLIEPIAGAEDQDWFKCLSHKWKVYLR 85 (380)
Q Consensus 7 ~v~v~~~~~gs~~~~~~~~~~~~~kl~ag~~~~~~~Dvv~~~-~~~~~~~~~~gll~pld~~~~~~~~~~~~~~~~~~~~ 85 (380)
+++|++..+++ .++..+ +++.+. ++.+||++.. ...+..+.++|+|+|++.. .++++. +.+.
T Consensus 48 gi~V~~~~~~s-~~~~~k-------l~ae~~-~~~~Dvv~~~~~~~~~~~~~~gll~~~~~~----~~~~~~---~~~~- 110 (334)
T TIGR03261 48 DIKINWVRDST-GIITAK-------LLAEKN-NPQADVVWGLAASSLALLDKEGMLKPYKPK----GLDALN---PKFR- 110 (334)
T ss_pred CceEEEEECCh-HHHHHH-------HHHHhh-CCCCCEEEecCchHHHhhhhccccccCCCc----ChhhcC---Hhhh-
Confidence 56666655443 444444 544332 2469999865 4567788999999999853 233333 3222
Q ss_pred hhCCCccCCCCCEEEeecccceeEEEEeccccccCCCCCCCCHHHhcCccccCceeeecChhHHHH----HH-HHHcCCC
Q 016927 86 RNDAGEIDPRGKIWAAPYRWGTMVIAYKKSKFRKHNLAPIEDWKDLWRPELAGRISMVNSPREVIG----SV-LKYMGAS 160 (380)
Q Consensus 86 ~~~~~~~d~~g~~Y~vP~~~~~~gi~Yn~d~~~~~g~~~p~sW~dL~~~~~~gki~~~~~~~~~~~----~a-l~~~G~~ 160 (380)
+++++.|.+++..+..+|+||++++++.|+++|+||+||++|+++|+|++.+......+ .+ +...|
T Consensus 111 -------~~~~~~~~~~~~~~~~~~~yN~~~~~~~g~~~P~sw~dL~~p~~~g~i~~~dp~~s~~~~~~~~~~~~~~G-- 181 (334)
T TIGR03261 111 -------DAKNPPHWVGMDAWMAAICFNTVEAKKKGLPKPTSWEDLTKPEYKGHIVMPNPASSGTGFLDVSAWLQMMG-- 181 (334)
T ss_pred -------CCCCCCceEeeeeeEEEEEEehHHHHhcCCCCCCChHHhcCHHhcCCEecCCCccchHHHHHHHHHHHHhC--
Confidence 23333355666677889999999998888888999999999999999999874322211 11 12222
Q ss_pred CCCCChhhhhccchHHHHHHHHHHhhhccccc--chhHHHHhHcCCEEEEEechhcHHHHHHcCCCcEEEccCCCcccee
Q 016927 161 YNSNNIDLQVAGGKISVQQNLALLANQARLFD--STHYLKAFGIGDVWVAVGWSSDVLPAVKRMSNVAVVVPKSGASLWA 238 (380)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~L~~l~~~v~~~~--~~~~~~~~~~Gev~~~~~~s~~~~~~~~~~~~i~~~~P~eG~~~~~ 238 (380)
.++++++|.++++++..++ .++..+++.+||+.+++.|++++...+.++.++++++|+||+..+.
T Consensus 182 -------------~~~~~~~l~~l~~n~~~~~~s~~~~~~~v~~Ge~~i~~~~~~~~~~~~~~g~~v~~~~P~eG~~~~~ 248 (334)
T TIGR03261 182 -------------EDKGWDYMDKLHKNIAVYTHSGSKPCKLAGMGEFPIGISMAYRALKEKKKGAPIDVVFPKEGLGWDI 248 (334)
T ss_pred -------------hHHHHHHHHHHHhccCccCCCChHHHHHHhCCCceEEEEecHHHHHHHhCCCCeEEEecCCCCeeee
Confidence 1356889999999987775 3467788999999999999999888888888999999999998999
Q ss_pred eeEEEeCCCCCcccccCCCCCCChHHHHHHHHHHhhHHhhchhhhh
Q 016927 239 DLWAIPAASRLETKQIGGRVRGPSPLIHQWIEFCLQTARALPFKQE 284 (380)
Q Consensus 239 d~~~I~k~s~~~~~~~~~~~~~~~~~A~~fi~fllspe~~~~~~~~ 284 (380)
++++|+|+++|++ +|++||+|++|||.|..+.+.
T Consensus 249 ~~~ai~k~a~~~e------------~A~~fidfllS~e~Q~~~~~~ 282 (334)
T TIGR03261 249 EATAIIKGSKNND------------AAKKLVDWSISDEAMELYAKN 282 (334)
T ss_pred eeeEEEcCCCCHH------------HHHHHHHHHcCHHHHHHHHhc
Confidence 9999999999998 999999999999999998653
No 7
>PF13343 SBP_bac_6: Bacterial extracellular solute-binding protein; PDB: 2QRY_D 1XVX_A 1SI1_A 1SI0_A 1Q35_A 1Y9U_A 2OWS_A 2OWT_A 2VP1_A 2VOZ_A ....
Probab=99.94 E-value=8.3e-27 Score=216.96 Aligned_cols=211 Identities=22% Similarity=0.387 Sum_probs=161.8
Q ss_pred CCccEEE-eCcHHHHHHHHcCcccccccCCCccccCCCChhhHHHHhhhCCCccCCCCCEEEeecccceeEEEEeccccc
Q 016927 40 MAADLVS-VGDSWLSFAIKKRLIEPIAGAEDQDWFKCLSHKWKVYLRRNDAGEIDPRGKIWAAPYRWGTMVIAYKKSKFR 118 (380)
Q Consensus 40 ~~~Dvv~-~~~~~~~~~~~~gll~pld~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~Y~vP~~~~~~gi~Yn~d~~~ 118 (380)
+.+||++ .+...+.+++++|+++|++.. .++++.+... ...|++| |.+|+.++..+|+||++.++
T Consensus 2 p~aDv~~~~~~~~~~~~~~~gll~p~~~~----~~~~~~~~~~--------~~~d~~g--~~~~~~~~~~~i~yN~~~~~ 67 (242)
T PF13343_consen 2 PQADVIVSLDPDFMERAKEAGLLQPYDPS----NIDNVPNEFE--------SFKDPDG--YWVPYGYGPVVIAYNTDKLK 67 (242)
T ss_dssp -S-SEEEEESHHHHHHHHHTTGBE---HH----HHHHHSHCSG--------GGBHTTS--SSEEEEEEEEEEEEETTTSS
T ss_pred CceeEEEECCHHHHHHHHHCcCeeeCCcc----chhhCcchHH--------hccCCCC--eEEEEEEEEEEEEEEhhhcC
Confidence 4799999 888899999999999999853 3444442211 1245556 44599999999999999998
Q ss_pred cCCCCCCCCHHHhcCccccCceeeecChhHHHHHHHHHcCCCCCCCChhhhhccchHHHHHHHHHHhhhcccccchhHHH
Q 016927 119 KHNLAPIEDWKDLWRPELAGRISMVNSPREVIGSVLKYMGASYNSNNIDLQVAGGKISVQQNLALLANQARLFDSTHYLK 198 (380)
Q Consensus 119 ~~g~~~p~sW~dL~~~~~~gki~~~~~~~~~~~~al~~~G~~~~~~~~~~~~~~~~~~~~~~L~~l~~~v~~~~~~~~~~ 198 (380)
+.++ |+||+||++|+++|+|++.+.........+..+.. .. +.+++.++|+.++.+...+...+..+
T Consensus 68 ~~~~--P~sw~dL~~p~~~g~i~~~~~~~~~~~~~~~~~~~-------~~----g~~~~~~~l~~l~~n~~~~~~~~~~~ 134 (242)
T PF13343_consen 68 ERDL--PTSWADLLDPKYKGKIALPDPNSDTGLAFLLALAE-------AY----GEDAGWEWLRELKANGATFSSSQAAQ 134 (242)
T ss_dssp SGGT--TSSGGGGGSGGGTTTEEEETTTSHHHHHHHHHHHH-------HH----HHHHHHHHHHHHHHCBSSSCHHHHHH
T ss_pred CCCC--CccHHHHHHHHhCCCEEECCccHHHHHHHHHHHHH-------Hh----hHHHHHHHHHHHHhhcccccchhhhh
Confidence 7332 89999999999999999998653333333323221 10 14578899999999888777678889
Q ss_pred HhHcCC--EEEEEechhcHHHHHHcCCCcEEEccCCCccceeeeEEEeCCCCCcccccCCCCCCChHHHHHHHHHHhhHH
Q 016927 199 AFGIGD--VWVAVGWSSDVLPAVKRMSNVAVVVPKSGASLWADLWAIPAASRLETKQIGGRVRGPSPLIHQWIEFCLQTA 276 (380)
Q Consensus 199 ~~~~Ge--v~~~~~~s~~~~~~~~~~~~i~~~~P~eG~~~~~d~~~I~k~s~~~~~~~~~~~~~~~~~A~~fi~fllspe 276 (380)
.+.+|| +.+++.|.+.....+..+ ++++++|++|+.+|.++++|+++++|++ +|++||||++|++
T Consensus 135 ~~~~Ge~~~~i~~~~~~~~~~~~~~~-~i~~v~P~eG~~~~~~~~~i~k~a~~~~------------~A~~fi~~lls~e 201 (242)
T PF13343_consen 135 AVASGEGAVAIGISWYSRAAQAKEKG-PIKFVYPEEGTVVWPDGIAIVKGAPNPE------------AAKKFINFLLSPE 201 (242)
T ss_dssp HHHTTSCSEEEEEHHHHHHHHHCTTT-TEEEE-TTTGBEEEEEEEEEBTT-STHH------------HHHHHHHHHTSHH
T ss_pred HhhCCCceEEEEEehHHHHHHhhhcC-CeEEEecCCCcEEEEEEEEEeCCCCCHH------------HHHHHHHHHCCHH
Confidence 999999 999999988888877777 9999999999999999999999999998 9999999999999
Q ss_pred hhchhhhhhcCCCCCC
Q 016927 277 RALPFKQEVIPGASPS 292 (380)
Q Consensus 277 ~~~~~~~~~~~~~~p~ 292 (380)
.|..+.+. ++..|.
T Consensus 202 ~q~~~~~~--~~~~P~ 215 (242)
T PF13343_consen 202 AQKILAQA--GFEYPV 215 (242)
T ss_dssp HHHHHHHH--CTSEES
T ss_pred HHHHHHHh--CcCcCC
Confidence 99999875 333554
No 8
>TIGR01276 thiB thiamine ABC transporter, periplasmic binding protein. This model finds the thiamine (and thiamine pyrophosphate) ABC transporter periplasmic binding protein ThiB in proteobacteria. Completed genomes having this protein (E. coli, Vibrio cholera, Haemophilus influenzae) also have the permease ThiP, described by TIGRFAMs equivalog model TIGR01253.
Probab=99.94 E-value=2.3e-25 Score=214.80 Aligned_cols=226 Identities=17% Similarity=0.135 Sum_probs=160.2
Q ss_pred CceEEEEEEcccHHHHHHhcccchhHhhcCCCCCCCccEEEeCc-HHHHHHHHcCcccccccCCCccccCCCChhhHHHH
Q 016927 6 KRLKFQMNLCASIDGIVNNLSVPFNKVKAKSAPYMAADLVSVGD-SWLSFAIKKRLIEPIAGAEDQDWFKCLSHKWKVYL 84 (380)
Q Consensus 6 ~~v~v~~~~~gs~~~~~~~~~~~~~kl~ag~~~~~~~Dvv~~~~-~~~~~~~~~gll~pld~~~~~~~~~~~~~~~~~~~ 84 (380)
.+++|+.+..+|..++.++ |++++. ++.+||++..+ ..+.++.++|+|+|++.+. ...++..
T Consensus 30 ~gi~V~~~~~~s~~~l~~k-------l~~e~~-~~~~DVv~~~~~~~~~~~~~~gll~p~~~~~---~~~~~~~------ 92 (309)
T TIGR01276 30 CNCELKLVALEDGVSLLNR-------LRLEGK-NSKADVVLGLDNNLLDAASKTGLFAKSGVAA---DAVNVPG------ 92 (309)
T ss_pred HCCEEEEEecCcHHHHHHH-------HHHcCC-CCCCCEEEecCcHHHHHHHHCCCcccCCCCh---hhccCCc------
Confidence 4578877777777788766 777543 24799998854 5688999999999996431 1112211
Q ss_pred hhhCCCccCCCCCEEEeecccceeEEEEeccccccCCCCCCCCHHHhcCccccCceeeecChhHHHHHHHHHcCCCCCCC
Q 016927 85 RRNDAGEIDPRGKIWAAPYRWGTMVIAYKKSKFRKHNLAPIEDWKDLWRPELAGRISMVNSPREVIGSVLKYMGASYNSN 164 (380)
Q Consensus 85 ~~~~~~~~d~~g~~Y~vP~~~~~~gi~Yn~d~~~~~g~~~p~sW~dL~~~~~~gki~~~~~~~~~~~~al~~~G~~~~~~ 164 (380)
.+ ...|++|+.++.++|+||++.+++ +|+||+||++++++|+|++.+.....++.++...-....
T Consensus 93 ------~~---~~~~~~p~~~~~~~i~yn~~~~~~----~P~sw~DL~~~~~~g~i~~~~p~~s~~g~~~~~~~~~~~-- 157 (309)
T TIGR01276 93 ------GW---NNDTFVPFDYGYFAFVYDKNKLKN----PPQSLKELVESDQNWRVIYQDPRTSTPGLGLLLWMQKVY-- 157 (309)
T ss_pred ------cc---cCCeEEEEeeEEEEEEECccccCC----CCCCHHHHhccccCCeEEeeCCCCCcHHHHHHHHHHHHc--
Confidence 11 123889999999999999999975 799999999999999999977443333322211100000
Q ss_pred ChhhhhccchHHHHHHHHHHhhhcccc--cchhHHHHhHcCCEEEEEechhcHHH--HHHcCCCcEEEccCCCccceeee
Q 016927 165 NIDLQVAGGKISVQQNLALLANQARLF--DSTHYLKAFGIGDVWVAVGWSSDVLP--AVKRMSNVAVVVPKSGASLWADL 240 (380)
Q Consensus 165 ~~~~~~~~~~~~~~~~L~~l~~~v~~~--~~~~~~~~~~~Gev~~~~~~s~~~~~--~~~~~~~i~~~~P~eG~~~~~d~ 240 (380)
++ ...++++.|. .+...+ ...+...+|++|+++|++.|+++... ....+.++.++.|+||+..++++
T Consensus 158 -g~-----~~~~~~~~L~---~~~~~~~~~~~~~~~~~~~Ge~~i~i~~~~~~~~~~~~~~~~~~~~~~~~eG~~~~~~~ 228 (309)
T TIGR01276 158 -GD-----DAPQAWQKLA---KKTVTVTKGWSEAYGLFLKGESDLVLSYTTSPAYHILEEKKDNYAAANFSEGHYLQVEV 228 (309)
T ss_pred -Cc-----cHHHHHHHHH---HcCceeCCChHHHHHHHHcCCcCEEEecCCcHHHHhhcccCcccceEecCCCCEeEEEE
Confidence 11 0123444443 333222 23456679999999999999876543 22334567888899999999999
Q ss_pred EEEeCCCCCcccccCCCCCCChHHHHHHHHHHhhHHhhchhhhh
Q 016927 241 WAIPAASRLETKQIGGRVRGPSPLIHQWIEFCLQTARALPFKQE 284 (380)
Q Consensus 241 ~~I~k~s~~~~~~~~~~~~~~~~~A~~fi~fllspe~~~~~~~~ 284 (380)
++|+|+++|++ +|++||||++|||.|..+.+.
T Consensus 229 ~ai~k~a~n~e------------~A~~Fidflls~e~Q~~~~~~ 260 (309)
T TIGR01276 229 AARTAASKQPE------------LAQKFLQFLVSPAFQNAIPTG 260 (309)
T ss_pred EEEeCCCCCHH------------HHHHHHHHHcCHHHHHHHHhh
Confidence 99999999998 999999999999999988764
No 9
>TIGR01254 sfuA ABC transporter periplasmic binding protein, thiB subfamily. The model describes thiamine ABC transporter, periplasmic protein in bacteria and archae. The protein belongs to the larger ABC transport system. It consists of at least three components: the thiamine binding periplasmic protein; an inner membrane permease; an ATP-binding subunit. It has been experimentally demonstrated that the mutants in the various steps in the de novo synthesis of the thiamine and the biologically active form, namely thiamine pyrophosphate can be exogenously supplemented with thiamine, thiamine monophosphate (TMP) or thiamine pyrophosphate (TPP).
Probab=99.93 E-value=6.4e-25 Score=211.28 Aligned_cols=228 Identities=16% Similarity=0.141 Sum_probs=164.8
Q ss_pred CCceEEEEEEcccHHHHHHhcccchhHhhcCCCCCCCccEEEe-CcHHHHHHHHcCcccccccCCCccccCCCChhhHHH
Q 016927 5 GKRLKFQMNLCASIDGIVNNLSVPFNKVKAKSAPYMAADLVSV-GDSWLSFAIKKRLIEPIAGAEDQDWFKCLSHKWKVY 83 (380)
Q Consensus 5 ~~~v~v~~~~~gs~~~~~~~~~~~~~kl~ag~~~~~~~Dvv~~-~~~~~~~~~~~gll~pld~~~~~~~~~~~~~~~~~~ 83 (380)
..+++|+.+..++..++.++ +++++. ++.+||++. +..++.++.++|+|+|++.. ..++..
T Consensus 29 ~~gi~V~~~~~~~~~~~~~~-------l~~~~~-~~~~Dv~~~~~~~~~~~~~~~gll~~~~~~-----~~~~~~----- 90 (304)
T TIGR01254 29 DCNCKVKFVALEDAGELLNR-------LRLEGK-NPKADVVLGLDNNLLEAASKTGLLAPSGVA-----LDKVNV----- 90 (304)
T ss_pred hcCcEEEEEECCCHHHHHHH-------HHhcCC-CCCCCEEEEeCHHHHHHHHHcCCcccCCcc-----cccccc-----
Confidence 45688888887777777665 666432 136999996 66789999999999999743 112210
Q ss_pred HhhhCCCccCCCCCEEEeecccceeEEEEeccccccCCCCCCCCHHHhcCccccCceeeecChhHHHHHHHHHcCCCCCC
Q 016927 84 LRRNDAGEIDPRGKIWAAPYRWGTMVIAYKKSKFRKHNLAPIEDWKDLWRPELAGRISMVNSPREVIGSVLKYMGASYNS 163 (380)
Q Consensus 84 ~~~~~~~~~d~~g~~Y~vP~~~~~~gi~Yn~d~~~~~g~~~p~sW~dL~~~~~~gki~~~~~~~~~~~~al~~~G~~~~~ 163 (380)
.... ...|++|+.++..+|+||++++++ +|+||+||++++++|||++.+......+.++........
T Consensus 91 ------~~~~--~~~~~~p~~~~~~~i~yn~~~~~~----~P~sw~dL~~~~~~g~i~~~~p~~~~~~~~~~~~~~~~~- 157 (304)
T TIGR01254 91 ------PGGW--NNATFLPFDYGYVAFVYDKNKLQN----PPQSLKELVEPEQDLLVIYQDPRTSSPGLGLLLWMQSVY- 157 (304)
T ss_pred ------cccc--CCCeEEEEeeeeEEEEEchHHhcC----CCCCHHHHhCHHhcCcEEecCCCCChhHHHHHHHHHHhc-
Confidence 0111 123889999999999999999976 799999999999999999987443333333222111111
Q ss_pred CChhhhhccchHHHHHHHHHHhhhcc-cc-cchhHHHHhHcCCEEEEEechhcH-H-HHHHcCCCcEEEccCCCccceee
Q 016927 164 NNIDLQVAGGKISVQQNLALLANQAR-LF-DSTHYLKAFGIGDVWVAVGWSSDV-L-PAVKRMSNVAVVVPKSGASLWAD 239 (380)
Q Consensus 164 ~~~~~~~~~~~~~~~~~L~~l~~~v~-~~-~~~~~~~~~~~Gev~~~~~~s~~~-~-~~~~~~~~i~~~~P~eG~~~~~d 239 (380)
. .+.+.+++.+|+++.. .+ ...+....|.+|+++|++.|+++. . ...+++.++.++.|++|+..|++
T Consensus 158 --g-------~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~Ge~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 228 (304)
T TIGR01254 158 --G-------EDDAPQAWKQLRKKTVTVTKGWSEAYGTFLGGEYDLVLSYATSPAYHVLFEKKDNYAALNFSEGHYLQVE 228 (304)
T ss_pred --C-------hHHHHHHHHHHHhCCeecCCCCHHHHHHHhcCCccEEEEeccchhhhhhhccCCceeEEecCCCCEEEEE
Confidence 0 1134556666665432 22 234556789999999999998763 3 23445668998888899999999
Q ss_pred eEEEeCCCCCcccccCCCCCCChHHHHHHHHHHhhHHhhchhhhh
Q 016927 240 LWAIPAASRLETKQIGGRVRGPSPLIHQWIEFCLQTARALPFKQE 284 (380)
Q Consensus 240 ~~~I~k~s~~~~~~~~~~~~~~~~~A~~fi~fllspe~~~~~~~~ 284 (380)
+++|+++++|++ +|++||+||+|||.|+.+++.
T Consensus 229 ~~ai~k~a~n~e------------~A~~fi~fllspe~q~~~a~~ 261 (304)
T TIGR01254 229 GAARLKGAKQPE------------LADKFVQFLLSPAVQNAIPTG 261 (304)
T ss_pred EEEEECCCCCHH------------HHHHHHHHHcCHHHHHHHHhc
Confidence 999999999998 999999999999999998865
No 10
>PF13416 SBP_bac_8: Bacterial extracellular solute-binding protein; PDB: 2FNC_A 1ELJ_A 3TTM_B 3TTK_C 2W7Y_A 3RPW_A 2GHB_C 2GHA_A 1POY_3 1POT_A ....
Probab=99.93 E-value=4.5e-25 Score=208.53 Aligned_cols=260 Identities=18% Similarity=0.282 Sum_probs=193.8
Q ss_pred ceEEEEEEcccHHHHHHhcccchhHhhcCCCCCCCccEEEeCcHHHHHHHHcCcccccccCCCccccCCCChhhHHHHhh
Q 016927 7 RLKFQMNLCASIDGIVNNLSVPFNKVKAKSAPYMAADLVSVGDSWLSFAIKKRLIEPIAGAEDQDWFKCLSHKWKVYLRR 86 (380)
Q Consensus 7 ~v~v~~~~~gs~~~~~~~~~~~~~kl~ag~~~~~~~Dvv~~~~~~~~~~~~~gll~pld~~~~~~~~~~~~~~~~~~~~~ 86 (380)
+|+|+.... +.+++.+++. +.+.+|.. +.+||+.....++..+++.|+|+||+.. ++.+++ +..++.
T Consensus 11 ~i~V~~~~~-~~~~~~~~l~---~~~~~g~~--Pd~dv~~~~~~~~~~~~~~g~l~~L~~~------~~~~~~-~~~~~~ 77 (281)
T PF13416_consen 11 GIKVEIQTF-PSDDYQQKLQ---SALASGNA--PDIDVVWPDSSWIPQLAEQGLLEDLDDL------ENYDDI-PDALEA 77 (281)
T ss_dssp TEEEEEEEE-SHHHHHHHHH---HHHHTTSS--SSESEEEEEHHHHHHHHHTTHBEHHTGH------GGGGGB-HHHHHH
T ss_pred CcEEEEEeC-CcHHHHHHHH---hhhcCCCc--cceEEEEECHHHHHHHHHCCCccccchh------hhhccc-hHHHHh
Confidence 688877777 5567777642 22445554 2467888888899999999999999842 333333 333332
Q ss_pred hCCCccCCCCCEEEeecccce-eEEEEeccccccCCCCCCCCHHHhcC--ccccCceeeecChhHHHHHHHHHcCCCCCC
Q 016927 87 NDAGEIDPRGKIWAAPYRWGT-MVIAYKKSKFRKHNLAPIEDWKDLWR--PELAGRISMVNSPREVIGSVLKYMGASYNS 163 (380)
Q Consensus 87 ~~~~~~d~~g~~Y~vP~~~~~-~gi~Yn~d~~~~~g~~~p~sW~dL~~--~~~~gki~~~~~~~~~~~~al~~~G~~~~~ 163 (380)
+..+|+.|++|+.+++ .+++||+++++++ +|+||++|++ .+++|++++.+........++.+.|..++.
T Consensus 78 -----~~~~G~~y~~P~~~~~~~~~~yn~d~~~~~---~p~t~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 149 (281)
T PF13416_consen 78 -----FTYDGKLYGVPFDYGTPYGLYYNKDLLKKA---PPKTWDELLEVAKKLKGKYGFPDPASGWMQWALIAGGKSFDD 149 (281)
T ss_dssp -----TEETTEESEEEEEEEEEEEEEEETTTHSHS---GTSSHHHHHHHHHHHTTHEEEESCHHHHHHHHHHHTTSECTE
T ss_pred -----cCCCCeEEEEEEeeccceEEEEchhhcccC---CcccHHHHhhhHHHhcccccccccchhHhhhhhhccCCchhc
Confidence 2346999999999886 7999999999974 8999999999 688999988776655444444455555532
Q ss_pred C--ChhhhhccchHHHHHHHHHHhhhccccc-chhHHHHhHcCCEEEEEechhcHHHHHHcCCCcEEEccCCCccceeee
Q 016927 164 N--NIDLQVAGGKISVQQNLALLANQARLFD-STHYLKAFGIGDVWVAVGWSSDVLPAVKRMSNVAVVVPKSGASLWADL 240 (380)
Q Consensus 164 ~--~~~~~~~~~~~~~~~~L~~l~~~v~~~~-~~~~~~~~~~Gev~~~~~~s~~~~~~~~~~~~i~~~~P~eG~~~~~d~ 240 (380)
. +++ ..++.+.+.++.++...+. ..+..+.|.+|+++|.+++++.+..+++.+.++++++|++|+..+..+
T Consensus 150 ~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~~~~~f~~G~~~~~~~~~~~~~~~~~~~~~~~~~~P~~g~~~~~~~ 223 (281)
T PF13416_consen 150 DGTSEN------FVEALEFLKELYDNGYFYGSGDDARQLFASGKVAMIIGGSWSISNLQKAGPDFGVAPPKDGTFVGGNG 223 (281)
T ss_dssp ETTSHH------HHHHHHHHHHHHHTTSEETSHHHHHHHHHTTSESEEEEEGHHHHHHHHTTTTEEEEECTTTEEEEEEE
T ss_pred ccCCHH------HHHHHHHHHHHHHhcccccchhHHHHHhcCCCeeeecccHhHHHHHHHhCCCeeEecCccccccCcce
Confidence 2 222 5678889988887665443 346788999999999999999988888888899999998899999999
Q ss_pred EEEeCCCCCcccccCCCCCCChHHHHHHHHHHhhHHhhchhhhhhcCCCCCCccccccccCChhHhcC
Q 016927 241 WAIPAASRLETKQIGGRVRGPSPLIHQWIEFCLQTARALPFKQEVIPGASPSALETTLVKLPEELLKG 308 (380)
Q Consensus 241 ~~I~k~s~~~~~~~~~~~~~~~~~A~~fi~fllspe~~~~~~~~~~~~~~p~~~~~a~~~l~~e~~~~ 308 (380)
++|+++++|++ .++|++||+|+++++.|..+++. .++.+++ ..+ ..++++.++
T Consensus 224 ~~i~~~~~~~~----------~~aA~~fl~~l~s~e~q~~~~~~-~g~~p~~--~~~--~~~~~~~~~ 276 (281)
T PF13416_consen 224 FAIPKNSKNPE----------AEAAWEFLKFLTSPEGQAEWAEA-TGYLPVN--KDV--YESDEYKKD 276 (281)
T ss_dssp EEEBTTSSTHH----------HHHHHHHHHHHTSHHHHHHHHHH-HTSEESB--HHH--HHSHHHHTS
T ss_pred EEEeCCCChHH----------HHHHHHHHHHHcCHHHHHHHHHH-hCCCCCC--hhh--cCCHHHhhC
Confidence 99999999998 12399999999999999999875 4553333 222 236777664
No 11
>PRK11205 tbpA thiamine transporter substrate binding subunit; Provisional
Probab=99.92 E-value=3.6e-24 Score=208.43 Aligned_cols=225 Identities=16% Similarity=0.162 Sum_probs=157.1
Q ss_pred ceEEEEEEcccHHHHHHhcccchhHhhcCCCCCCCccEEEeCc-HHHHHHHHcCcccccccCCCccccCCCChhhHHHHh
Q 016927 7 RLKFQMNLCASIDGIVNNLSVPFNKVKAKSAPYMAADLVSVGD-SWLSFAIKKRLIEPIAGAEDQDWFKCLSHKWKVYLR 85 (380)
Q Consensus 7 ~v~v~~~~~gs~~~~~~~~~~~~~kl~ag~~~~~~~Dvv~~~~-~~~~~~~~~gll~pld~~~~~~~~~~~~~~~~~~~~ 85 (380)
+++|+++..++..+++++ +++.+. ++.+||++..+ ..+..+.++|+|+|++.+. ...++..
T Consensus 52 gikV~~~~~~s~~~~~~k-------l~~e~~-~~~~DV~~~~~~~~~~~l~~~gll~~~~~~~---~~~~~~~------- 113 (330)
T PRK11205 52 GCELKFVALEDGVSLLNR-------LRLEGK-NSKADVVLGLDNNLLAAAKQTGLFAPSGVDT---SAVTVPG------- 113 (330)
T ss_pred CCEEEEEecCcHHHHHHH-------HHhcCC-CCCCCEEEECCchHHHHHHHCCCcccccCCh---hhccCcc-------
Confidence 466666666665555544 665432 23699998765 6788999999999986421 1112221
Q ss_pred hhCCCccCCCCCEEEeecccceeEEEEeccccccCCCCCCCCHHHhcCccccCceeeecChhHHHHHHHHHcCCCCCCCC
Q 016927 86 RNDAGEIDPRGKIWAAPYRWGTMVIAYKKSKFRKHNLAPIEDWKDLWRPELAGRISMVNSPREVIGSVLKYMGASYNSNN 165 (380)
Q Consensus 86 ~~~~~~~d~~g~~Y~vP~~~~~~gi~Yn~d~~~~~g~~~p~sW~dL~~~~~~gki~~~~~~~~~~~~al~~~G~~~~~~~ 165 (380)
.+. . .|++||.++.++|+||++++++ +|+||+||++++++|||++.+......+..+........
T Consensus 114 -----~~~--~-~~~~~~~~~~~~l~yn~~~~~~----~P~sw~DL~~~~~~g~i~~~dp~~s~~~~~~~~~~~~~~--- 178 (330)
T PRK11205 114 -----GWN--D-DTFVPYDYGYFAFVYDKEKLKN----PPKSLKELVESDQNWKVIYQDPRTSTPGLGLLLWMKKVY--- 178 (330)
T ss_pred -----ccc--C-CceeeEeeeeEEEEEcccccCC----CCCCHHHHhChhhcCCEEecCCCCCcHHHHHHHHHHHhc---
Confidence 121 1 2679999999999999999975 899999999999999999976332222222111100000
Q ss_pred hhhhhccchHHHHHHHHHHhhhccccc--chhHHHHhHcCCEEEEEechhc-HHHHHHc-CCCcEEEccCCCccceeeeE
Q 016927 166 IDLQVAGGKISVQQNLALLANQARLFD--STHYLKAFGIGDVWVAVGWSSD-VLPAVKR-MSNVAVVVPKSGASLWADLW 241 (380)
Q Consensus 166 ~~~~~~~~~~~~~~~L~~l~~~v~~~~--~~~~~~~~~~Gev~~~~~~s~~-~~~~~~~-~~~i~~~~P~eG~~~~~d~~ 241 (380)
.+ ...+.+.+++.+...+. ..+..+.|.+|+++|++.|+++ +....++ +.++.+++|++|+..+++++
T Consensus 179 g~--------~~~~~~~~L~~~~~~~~~~~~~~~~~~~~Ge~~~~i~~~~~~~~~~~~~~~~~~~~~~~~eG~~~~~~~~ 250 (330)
T PRK11205 179 GD--------DAPQAWQKLAKKTVTVTKGWSEAYGLFLKGEADLVLSYTTSPAYHIIAEKKDNYAAANFSEGHYLQVEVA 250 (330)
T ss_pred Cc--------hHHHHHHHHHhCCeeeCCChHHHHHHHHcCCccEEEeCCCcHHHHHhhccCCceeEEEcCCCCeEEEEEE
Confidence 00 12344556666654432 3466789999999999999875 3434333 44777888889999999999
Q ss_pred EEeCCCCCcccccCCCCCCChHHHHHHHHHHhhHHhhchhhhh
Q 016927 242 AIPAASRLETKQIGGRVRGPSPLIHQWIEFCLQTARALPFKQE 284 (380)
Q Consensus 242 ~I~k~s~~~~~~~~~~~~~~~~~A~~fi~fllspe~~~~~~~~ 284 (380)
+|+++++|++ +|++||||++|+|.|..+++.
T Consensus 251 ai~k~a~n~e------------~A~~Fi~fllS~e~Q~~~~~~ 281 (330)
T PRK11205 251 ARTAASKQPE------------LAQKFLQFMVSPAFQNAIPTG 281 (330)
T ss_pred EEeCCCCCHH------------HHHHHHHHHcCHHHHHHhhhh
Confidence 9999999998 999999999999999998764
No 12
>PRK15046 2-aminoethylphosphonate ABC transporter substrate-binding protein; Provisional
Probab=99.89 E-value=2e-22 Score=197.70 Aligned_cols=202 Identities=16% Similarity=0.214 Sum_probs=143.9
Q ss_pred CCccEEEeCcHHHHHHHHcCcccccccCCCccccCCCChhhHHHHhhhCCCccCCCCCEEEeecccceeEEEEecccccc
Q 016927 40 MAADLVSVGDSWLSFAIKKRLIEPIAGAEDQDWFKCLSHKWKVYLRRNDAGEIDPRGKIWAAPYRWGTMVIAYKKSKFRK 119 (380)
Q Consensus 40 ~~~Dvv~~~~~~~~~~~~~gll~pld~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~Y~vP~~~~~~gi~Yn~d~~~~ 119 (380)
+.+||++....++.++++.|+|+|++.. ..+++.+ . ..+++|. | +|+.++.++|+||++++++
T Consensus 85 ~~~DVv~~~~~~~~~~~~~Gll~~~~~~----~~~~i~~---~--------~~d~~g~-~-~~~~~~~~~l~Yn~~~~~~ 147 (349)
T PRK15046 85 PQADVLVTLPPFIQQAAAEGLLQPYSSV----NAKAVPA---I--------AKDADGT-Y-APFVNNYLSFIYNPKVLKT 147 (349)
T ss_pred CCCCEEEeCcHHHHHHHhCCCccccCcc----chhcCch---h--------hcCCCCC-E-EeeecceeEEEEchhhccC
Confidence 4699999988888999999999999852 1223322 1 1345564 4 6999999999999999976
Q ss_pred CCCCCCCCHHHhcCccccCceeeecChhHHHHHHHHHcCCCCCCCChhhhhccchHHHHHHHHHHhhhcccccc--hhHH
Q 016927 120 HNLAPIEDWKDLWRPELAGRISMVNSPREVIGSVLKYMGASYNSNNIDLQVAGGKISVQQNLALLANQARLFDS--THYL 197 (380)
Q Consensus 120 ~g~~~p~sW~dL~~~~~~gki~~~~~~~~~~~~al~~~G~~~~~~~~~~~~~~~~~~~~~~L~~l~~~v~~~~~--~~~~ 197 (380)
+|+||+||++++++|+|++.+......+..+......... .++++++|.+++++...+.. ....
T Consensus 148 ----~P~sw~dL~~~~~~gki~~~~p~~s~~g~~~~~~~~~~~G----------~~~a~~~l~~l~~~~~~~~~~~~~~~ 213 (349)
T PRK15046 148 ----APATWADLLDPKFKGKLQYSTPGQAGDGTAVLLLTFHLMG----------KDKAFDYLAKLQANNVGPSKSTGKLT 213 (349)
T ss_pred ----CCCCHHHHhCHHhCCCEEecCCCcCccHHHHHHHHHHHhC----------chHHHHHHHHHHHhCCCCCCCcchhh
Confidence 8999999999999999998753322111111111000000 13567888888887765532 3456
Q ss_pred HHhHcCCEEEEEechhc-HHHHHHcCCCcEEEccCC--C---ccceeeeEEEeCCCCCcccccCCCCCCChHHHHHHHHH
Q 016927 198 KAFGIGDVWVAVGWSSD-VLPAVKRMSNVAVVVPKS--G---ASLWADLWAIPAASRLETKQIGGRVRGPSPLIHQWIEF 271 (380)
Q Consensus 198 ~~~~~Gev~~~~~~s~~-~~~~~~~~~~i~~~~P~e--G---~~~~~d~~~I~k~s~~~~~~~~~~~~~~~~~A~~fi~f 271 (380)
+.|.+|++.++.++... ....++.++++++++|++ | +.....+++|+++++|++ +|++||+|
T Consensus 214 ~~~~~Ge~~~~~g~~~~~~~~~~~~~~~~~~~~P~~~~g~~~~~~~~~~~aI~~~s~n~~------------~A~~Fi~f 281 (349)
T PRK15046 214 PLVSKGEIYVANGDLQMNLAQAEHGGPNVKIFFPAKDGGERSTFALPYVIGLVKGAPNSE------------NGKKLIDF 281 (349)
T ss_pred HHhhcCceEEeccHHHHHHHHHhcCCCceEEEecCCCCCCcceeeccceeEEecCCCCHH------------HHHHHHHH
Confidence 78999999887543221 223345578899999976 3 334457899999999998 99999999
Q ss_pred HhhHHhhchhhhh
Q 016927 272 CLQTARALPFKQE 284 (380)
Q Consensus 272 llspe~~~~~~~~ 284 (380)
++||++|..+.+.
T Consensus 282 llS~e~Q~~~a~~ 294 (349)
T PRK15046 282 LLSKEAQTKVSDM 294 (349)
T ss_pred HhCHHHHHHHHhh
Confidence 9999999998864
No 13
>COG4143 TbpA ABC-type thiamine transport system, periplasmic component [Coenzyme metabolism]
Probab=99.81 E-value=9e-19 Score=164.28 Aligned_cols=245 Identities=18% Similarity=0.181 Sum_probs=168.6
Q ss_pred ceEEEEEEcccHHHHHHhcccchhHhhcCCCCCCCccEEEeCc-HHHHHHHHcCcccccccCCCccccCCCChhhHHHHh
Q 016927 7 RLKFQMNLCASIDGIVNNLSVPFNKVKAKSAPYMAADLVSVGD-SWLSFAIKKRLIEPIAGAEDQDWFKCLSHKWKVYLR 85 (380)
Q Consensus 7 ~v~v~~~~~gs~~~~~~~~~~~~~kl~ag~~~~~~~Dvv~~~~-~~~~~~~~~gll~pld~~~~~~~~~~~~~~~~~~~~ 85 (380)
+.+|+.+..|+-.+++++ |+-.+. ++..|||+--+ ..+.++.+.|++.|..... .. -++..
T Consensus 55 ~~~v~fV~~~d~v~llnR-------l~leg~-~~~ADvvvGldn~~l~~A~~~glf~~~~~d~--~~-~~vp~------- 116 (336)
T COG4143 55 GCKVNFVALGDGVELLNR-------LILEGK-NPKADVVVGLDNNLLARARETGLFAPYGVDA--SD-VPVPE------- 116 (336)
T ss_pred CceEEEEEcCcHHHHHHH-------HHHcCC-CCCCcEEEecChHHHHHHHhcCCcccCCCCc--cc-CCCCc-------
Confidence 456666667777777666 444333 25799998755 5888999999999987431 11 12222
Q ss_pred hhCCCccCCCCCEEEeecccceeEEEEeccccccCCCCCCCCHHHhcCccccCceeeecChhHHHHHHHHHcCCCCCCCC
Q 016927 86 RNDAGEIDPRGKIWAAPYRWGTMVIAYKKSKFRKHNLAPIEDWKDLWRPELAGRISMVNSPREVIGSVLKYMGASYNSNN 165 (380)
Q Consensus 86 ~~~~~~~d~~g~~Y~vP~~~~~~gi~Yn~d~~~~~g~~~p~sW~dL~~~~~~gki~~~~~~~~~~~~al~~~G~~~~~~~ 165 (380)
.+..+. ..+||.+|..+|+||++++++ ||+|.+||.+++++++|.+.|..+..-+.+++.--.+....
T Consensus 117 -----~~~~d~--f~~P~DyGy~a~vYd~~~~~~----ppksL~dL~~~~y~~~ii~qdPrtSspGl~fLlW~~svyg~- 184 (336)
T COG4143 117 -----GWKIDT--FALPYDYGYFAFVYDKTKLKN----PPKSLKDLVEPEYAGKIIYQDPRTSSPGLGFLLWTISVYGE- 184 (336)
T ss_pred -----ccccCc--cccccccceEEEEEchHHhcC----CcccHHHhcCccccCcEEecCCCCCCccHHHHHHHHHHhcc-
Confidence 233222 379999999999999999997 89999999999999999998854444333332111111111
Q ss_pred hhhhhccchHHHHHHHHHHhhhccc-c-cchhHHHHhHcCCEEEEEechhcHHH-HHHcC-CCcEEEccCCCccceeeeE
Q 016927 166 IDLQVAGGKISVQQNLALLANQARL-F-DSTHYLKAFGIGDVWVAVGWSSDVLP-AVKRM-SNVAVVVPKSGASLWADLW 241 (380)
Q Consensus 166 ~~~~~~~~~~~~~~~L~~l~~~v~~-~-~~~~~~~~~~~Gev~~~~~~s~~~~~-~~~~~-~~i~~~~P~eG~~~~~d~~ 241 (380)
+++.++..+|+.+..+ . .+++.-.+|..||+.|.++|+.+... ...++ .+..-..-.||..+.+++.
T Consensus 185 ---------d~~~~~W~kL~~~~v~v~~gWSeaY~aFt~GEap~VLSYtTspay~~~~~~~~~~~a~~f~eG~ylqiEga 255 (336)
T COG4143 185 ---------DGAPEAWAKLADNGVTVTKGWSEAYGAFTKGEAPLVLSYTTSPAYHVYPEKKDRYAAALFPEGHYLQVEGA 255 (336)
T ss_pred ---------ccHHHHHHHHHhCCeEecCcHHHHHHHHhCCccceEEEeccCcchhcccccccccchhcCCCCceeEEEee
Confidence 1346677778776433 3 23444449999999999999877433 22222 2332223347899999999
Q ss_pred EEeCCCCCcccccCCCCCCChHHHHHHHHHHhhHHhhchhhhhhcCCCCCCccccccccCChhHhc
Q 016927 242 AIPAASRLETKQIGGRVRGPSPLIHQWIEFCLQTARALPFKQEVIPGASPSALETTLVKLPEELLK 307 (380)
Q Consensus 242 ~I~k~s~~~~~~~~~~~~~~~~~A~~fi~fllspe~~~~~~~~~~~~~~p~~~~~a~~~l~~e~~~ 307 (380)
++.|+++|++ +|.+|++||+|+|.|..+-+..+ ..|.. ....||+.++.
T Consensus 256 a~~k~~knpe------------LA~~F~~FmlS~e~Q~~ip~~nw--m~Pa~---~~~~Lp~~f~~ 304 (336)
T COG4143 256 AVLKGAKNPE------------LADKFLQFMLSPEFQDAIPTTNW--MYPAV---KNVPLPAVFDA 304 (336)
T ss_pred eeecCCCCHH------------HHHHHHHHHhCHHHHhhCCccce--eeecC---CCCcCCHHHHh
Confidence 9999999998 99999999999999988776533 34542 23679999876
No 14
>TIGR03850 bind_CPR_0540 carbohydrate ABC transporter substrate-binding protein, CPR_0540 family. Members of this protein are the substrate-binding protein of a predicted carbohydrate transporter operon, together with permease subunits of ABC transporter homology families. This substrate-binding protein frequently co-occurs in genomes with a family of disaccharide phosphorylases, TIGR02336, suggesting that the molecule transported will include beta-D-galactopyranosyl-(1-3)-N-acetyl-D-glucosamine and related carbohydrates. Members of this family are sporadically strain by strain, often in species with a human host association, including Propionibacterium acnes and Clostridium perfringens, and Bacillus cereus.
Probab=99.79 E-value=9.5e-18 Score=168.97 Aligned_cols=237 Identities=14% Similarity=0.144 Sum_probs=141.3
Q ss_pred CccEEEeCc----HHHHHHHHcCcccccccCCCcc----ccCCCChhhHHHHhhhCCCccCCCCCEEEeecccceeEEEE
Q 016927 41 AADLVSVGD----SWLSFAIKKRLIEPIAGAEDQD----WFKCLSHKWKVYLRRNDAGEIDPRGKIWAAPYRWGTMVIAY 112 (380)
Q Consensus 41 ~~Dvv~~~~----~~~~~~~~~gll~pld~~~~~~----~~~~~~~~~~~~~~~~~~~~~d~~g~~Y~vP~~~~~~gi~Y 112 (380)
.|||+.+.. .++..+++.|+|.||+.....+ ...-.+++.+.+++...... ..+|+.||+|+..++.+++|
T Consensus 87 ~PDi~~~~~~~~~~~~~~~~~~g~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~ygvP~~~~~~~l~y 165 (437)
T TIGR03850 87 YPDVVYLATGRESGLTETLIKDKALADLTDVLDMKVPGEDVTVKDKILPGFVGSSATNP-YGDGKTYLAPMFYSPTGLFY 165 (437)
T ss_pred CCCEEEeCCCCCcccHHHHHhcCCcccChHHHcCcCCCcchhHHhhhChHhhhcccccc-cCCCeEEEEEeecceEEEEE
Confidence 599999975 3678899999999998531000 00001223333332110000 12589999999999999999
Q ss_pred eccccccCCCCCCCCHHHhcCc--ccc--Cc--eeeecCh-hH-HHHHHHHHcCCC-CCCCC---hhhhhc-cchHHHHH
Q 016927 113 KKSKFRKHNLAPIEDWKDLWRP--ELA--GR--ISMVNSP-RE-VIGSVLKYMGAS-YNSNN---IDLQVA-GGKISVQQ 179 (380)
Q Consensus 113 n~d~~~~~g~~~p~sW~dL~~~--~~~--gk--i~~~~~~-~~-~~~~al~~~G~~-~~~~~---~~~~~~-~~~~~~~~ 179 (380)
|+++|+++|+++|+||++|.+. +++ |. +.+.... .+ .+...+...|+. +.+.. ....+. ....++.+
T Consensus 166 Nkdl~~~aG~~~P~Twde~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~a~~ 245 (437)
T TIGR03850 166 NKTLFEEKGWEVPTTWDEMFALGDKAKAEGISLFTYPTTGYFDAFFYALLAEAGGDDFFNKAMNYEEGIWDTEEAKKAFD 245 (437)
T ss_pred cHHHHHHcCCCCCCCHHHHHHHHHHHHhcCCceeecCCcchHHHHHHHHHHHhcCHHHHHHHhcCCCCccCCHHHHHHHH
Confidence 9999999999999999999974 332 32 1111111 11 122222334432 10000 000000 11345666
Q ss_pred HHHHHhhhcc----cc----cchhHHHHhHcCCEEEEEechhcHHHHHHc----CCCcEE-EccC--CC----ccceeee
Q 016927 180 NLALLANQAR----LF----DSTHYLKAFGIGDVWVAVGWSSDVLPAVKR----MSNVAV-VVPK--SG----ASLWADL 240 (380)
Q Consensus 180 ~L~~l~~~v~----~~----~~~~~~~~~~~Gev~~~~~~s~~~~~~~~~----~~~i~~-~~P~--eG----~~~~~d~ 240 (380)
++.++..++. .. ..++..+.|.+|+++|.+.++..+..+++. +.++++ .+|. +| +..+..+
T Consensus 246 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~G~~a~~~~g~w~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~ 325 (437)
T TIGR03850 246 TVGKLATYTEPTTVANANNQDFTKNQQLVLDNKALFMPNGTWVVGEMKDAPRADGFEWGMTALPAVKEGGDRYSYTFFEQ 325 (437)
T ss_pred HHHHHHHhcCCCcccccccccccHHHHHHHcCCeEEEeCCcchHHHhhcCCCCCCCceeeeeCCccCCCCCcccccCcce
Confidence 6666655321 11 112456789999999887655544444432 235665 3563 22 2345678
Q ss_pred EEEeCCCCCcccccCCCCCCChHHHHHHHHHHhhHHhhchhhhhhcCCCCCC
Q 016927 241 WAIPAASRLETKQIGGRVRGPSPLIHQWIEFCLQTARALPFKQEVIPGASPS 292 (380)
Q Consensus 241 ~~I~k~s~~~~~~~~~~~~~~~~~A~~fi~fllspe~~~~~~~~~~~~~~p~ 292 (380)
++|+++++|++ +|++||+|+++++.|..+.. .++.+|.
T Consensus 326 ~~v~~~s~~~~------------aA~~Fi~~l~s~e~~~~~~~--~g~~~p~ 363 (437)
T TIGR03850 326 MWIPAAAKNKD------------LAKEFIAFLYSDEAAKIFAK--SGAVQPV 363 (437)
T ss_pred eEEECCCCCHH------------HHHHHHHHHhCHHHHHHHHh--cCCcCCc
Confidence 99999999998 99999999999999977543 3555564
No 15
>COG1840 AfuA ABC-type Fe3+ transport system, periplasmic component [Inorganic ion transport and metabolism]
Probab=99.79 E-value=7.7e-18 Score=161.90 Aligned_cols=227 Identities=19% Similarity=0.185 Sum_probs=161.6
Q ss_pred CceEEEEEEcccHHHHHHhcccchhHhhcCCCCCCCccEEEeCc-HHHHHHHHcCcccccccCCCccccCCCChhhHHHH
Q 016927 6 KRLKFQMNLCASIDGIVNNLSVPFNKVKAKSAPYMAADLVSVGD-SWLSFAIKKRLIEPIAGAEDQDWFKCLSHKWKVYL 84 (380)
Q Consensus 6 ~~v~v~~~~~gs~~~~~~~~~~~~~kl~ag~~~~~~~Dvv~~~~-~~~~~~~~~gll~pld~~~~~~~~~~~~~~~~~~~ 84 (380)
.+|+|+++..|+-+.+ .+ +.+....+...||++.+. ..+.++.+.|+++|+... +.+.+.+.
T Consensus 9 ~gikv~~~~~~s~~~~-~~-------~~~e~~~~~~aDv~~~~~~~~~~~l~~~gll~~y~~~-------~~~~i~~~-- 71 (299)
T COG1840 9 PGIKVEFVDAGSGELL-AR-------IIAEKGNPQAADVLWGGAPVSLDQLKEAGLLQPYKSP-------ELDEIPAW-- 71 (299)
T ss_pred cCceEEeeeCCcHHHH-HH-------HHHhhcCCCCCcEEEecCcchHHHHHhcCCccccCCc-------cHhhhhhh--
Confidence 6788888888876443 33 233222124679999998 477788888999998642 22322221
Q ss_pred hhhCCCccCCCCCEEEeecccceeEEEEeccccccCCCCCCCCHHHhcCccccCceeeecChhH-HHHHHHH---HcCCC
Q 016927 85 RRNDAGEIDPRGKIWAAPYRWGTMVIAYKKSKFRKHNLAPIEDWKDLWRPELAGRISMVNSPRE-VIGSVLK---YMGAS 160 (380)
Q Consensus 85 ~~~~~~~~d~~g~~Y~vP~~~~~~gi~Yn~d~~~~~g~~~p~sW~dL~~~~~~gki~~~~~~~~-~~~~al~---~~G~~ 160 (380)
..++.+ .|+.. .++..+++||++.+++...+.|+||.||.+|+++|+|.+.+.... ..-.++. ..|
T Consensus 72 ------~~~~~~-~~~~~-~~~~~~~~~n~~~~~~~~~~~P~~w~DL~~p~~kg~i~~~~p~~s~~~~~~~~~~~~~G-- 141 (299)
T COG1840 72 ------APDPDG-AYGGG-YVGPLVFAVNTDYNKDLLKPVPKSWADLAKPEYKGKVQMADPTSSGTAYAALLALQAYG-- 141 (299)
T ss_pred ------ccchhc-CCCcc-eEeeEEEEEehhhccccCCCCCCCHHHhcCHhhcCCccccCCcccHHHHHHHHHHHhcC--
Confidence 123322 23322 467889999999998866556999999999999999966553222 1111122 222
Q ss_pred CCCCChhhhhccchHHHHHHHHHHhhhcccc--cc-hhHHHHhHcCCEEEEEechhc--HHHHHHcCCCcEEEccCCCcc
Q 016927 161 YNSNNIDLQVAGGKISVQQNLALLANQARLF--DS-THYLKAFGIGDVWVAVGWSSD--VLPAVKRMSNVAVVVPKSGAS 235 (380)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~L~~l~~~v~~~--~~-~~~~~~~~~Gev~~~~~~s~~--~~~~~~~~~~i~~~~P~eG~~ 235 (380)
.+.++++|..++.|...+ .+ ....+.+.+|++.+++++... ....+.++.++++++|++|+.
T Consensus 142 -------------~~~~~~~l~~l~~n~~~~~~~~~~~~~~~va~Ge~~vg~~~~~~~~~~~~~~~~~~v~iv~P~~G~~ 208 (299)
T COG1840 142 -------------EEKGWAYLKGLAANLATYTGGSSSVVAKVVAGGEAAVGLGNLYYGAYAKDKAKGAPVEVVYPEEGTG 208 (299)
T ss_pred -------------hHHHHHHHHHHHHhcccccCCCcHHHHHHhhcCCceEEEEeeccHHHHHhhccCCceEEEecCCCce
Confidence 246788999999887653 33 355668899999999998884 334444566899999999999
Q ss_pred ceeeeEEEeCCCCCcccccCCCCCCChHHHHHHHHHHhhHHhhchhhhh
Q 016927 236 LWADLWAIPAASRLETKQIGGRVRGPSPLIHQWIEFCLQTARALPFKQE 284 (380)
Q Consensus 236 ~~~d~~~I~k~s~~~~~~~~~~~~~~~~~A~~fi~fllspe~~~~~~~~ 284 (380)
+....++|.++++|++ +|.+||+|++|+|.|..+.+.
T Consensus 209 v~~~~vaiik~a~~~e------------~Ak~fid~llS~egQ~~~~~~ 245 (299)
T COG1840 209 VNPSGVALLKKAKNPE------------AAKLFIDFLLSKEGQEILAKK 245 (299)
T ss_pred eeeeeeeeecCCCCHH------------HHHHHHHHHcCHHHHHHHHhc
Confidence 9999999999999998 999999999999999866654
No 16
>PRK09474 malE maltose ABC transporter periplasmic protein; Reviewed
Probab=99.75 E-value=4.7e-17 Score=161.82 Aligned_cols=218 Identities=17% Similarity=0.186 Sum_probs=138.0
Q ss_pred CccEEEeCcHHHHHHHHcCcccccccCCCccccCCCChhhHHHHhhhCCCccCCCCCEEEeecccceeEEEEeccccccC
Q 016927 41 AADLVSVGDSWLSFAIKKRLIEPIAGAEDQDWFKCLSHKWKVYLRRNDAGEIDPRGKIWAAPYRWGTMVIAYKKSKFRKH 120 (380)
Q Consensus 41 ~~Dvv~~~~~~~~~~~~~gll~pld~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~Y~vP~~~~~~gi~Yn~d~~~~~ 120 (380)
.|||+.+...++..+++.|+|+||+... .. .+++.+...+. ...+|+.||+|+...+.+++||+++|++
T Consensus 82 ~PDv~~~~~~~~~~~~~~G~l~~l~~~~--~~---~~~~~~~~~~~-----~~~dg~~YgvP~~~~~~~l~ynkdl~~~- 150 (396)
T PRK09474 82 GPDIIFWAHDRFGGYAQSGLLAEVTPSK--AF---KDKLVPFTWDA-----VRYNGKLIGYPIAVEALSLIYNKDLVPT- 150 (396)
T ss_pred CCcEEEeCchhHHHHHHCCccccCCccH--HH---HhhcCHHHHHH-----eeECCEEEEEeeeccceeEEEehhhccC-
Confidence 5999999888999999999999998531 11 12222222221 2235899999999999999999999986
Q ss_pred CCCCCCCHHHhcCc--ccc--Cceeee-cChhHHHH-HHHHHcCCC-CCCCCh-----hhhhc-cchHHHHHHHHHHhhh
Q 016927 121 NLAPIEDWKDLWRP--ELA--GRISMV-NSPREVIG-SVLKYMGAS-YNSNNI-----DLQVA-GGKISVQQNLALLANQ 187 (380)
Q Consensus 121 g~~~p~sW~dL~~~--~~~--gki~~~-~~~~~~~~-~al~~~G~~-~~~~~~-----~~~~~-~~~~~~~~~L~~l~~~ 187 (380)
+|+||+||.+. +++ |+..+. +.....+. ..+...|.. +...+. ...+. ....++.+++.++..+
T Consensus 151 ---~P~Twdel~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l~~~ 227 (396)
T PRK09474 151 ---PPKTWEEIPALDKELKAKGKSAIMWNLQEPYFTWPLIAADGGYAFKFENGGYDVKDVGVNNAGAKAGLQFLVDLVKN 227 (396)
T ss_pred ---CCcCHHHHHHHHHHHHhCCCceeeccCCchHhHHHHHHccCCeeeccCCCCCCccccCcCCHHHHHHHHHHHHHHHc
Confidence 89999999863 332 543332 21111111 122223322 111100 00011 1234566666666543
Q ss_pred cc---cccchhHHHHhHcCCEEEEEechhcHHHHHHcCCCcEEE-ccCC-C----ccceeeeEEEeCCCCCcccccCCCC
Q 016927 188 AR---LFDSTHYLKAFGIGDVWVAVGWSSDVLPAVKRMSNVAVV-VPKS-G----ASLWADLWAIPAASRLETKQIGGRV 258 (380)
Q Consensus 188 v~---~~~~~~~~~~~~~Gev~~~~~~s~~~~~~~~~~~~i~~~-~P~e-G----~~~~~d~~~I~k~s~~~~~~~~~~~ 258 (380)
-. ....++..+.|.+|+++|.+.++..+..+.+.+.+++++ +|.. | ...+..+++|+++++|++
T Consensus 228 g~~~~~~~~~~~~~~f~~G~~a~~~~g~w~~~~~~~~~~~~~~~~~P~~~g~~~~~~~~~~~~~i~~~s~~~e------- 300 (396)
T PRK09474 228 KHMNADTDYSIAEAAFNKGETAMTINGPWAWSNIDKSGINYGVTVLPTFNGKPSKPFVGVLSAGINAASPNKE------- 300 (396)
T ss_pred CCCCCCCChhHHHHHHhcCCeeEEEcCCcchHHHHhcCCceEEEeCCCCCCCCCCceeeeeEEEEeCCCCCHH-------
Confidence 11 112234567899999999987665555555556677764 5642 2 233445788999999998
Q ss_pred CCChHHHHHHHH-HHhhHHhhchhhhh
Q 016927 259 RGPSPLIHQWIE-FCLQTARALPFKQE 284 (380)
Q Consensus 259 ~~~~~~A~~fi~-fllspe~~~~~~~~ 284 (380)
+|++||+ |+++++.|..+.+.
T Consensus 301 -----aA~~fi~~~l~s~~~~~~~~~~ 322 (396)
T PRK09474 301 -----LAKEFLENYLLTDEGLETVNKD 322 (396)
T ss_pred -----HHHHHHHHHhcCHHHHHHHhhc
Confidence 9999996 99999999887653
No 17
>TIGR03851 chitin_NgcE carbohydrate ABC transporter, N-acetylglucosamine/diacetylchitobiose-binding protein. Members of this protein family are the substrate-binding protein, a lipid-anchored protein of Gram-positive bacteria in all examples found so far, that include NgcE of the chitin-degrader, Streptomyces olivaceoviridis, and close homologs from other species likely to share the same function. NgcE binds both N-acetylglucosamine and the chitin dimer, N,N'-diacetylchitobiose.
Probab=99.73 E-value=1.8e-16 Score=160.56 Aligned_cols=224 Identities=15% Similarity=0.151 Sum_probs=135.6
Q ss_pred CccEEEeCc---HHHHHHHHcCcccccccCCCccccCCCC--------hhhHHHHhhhCCCccCCCCCEEEeecccceeE
Q 016927 41 AADLVSVGD---SWLSFAIKKRLIEPIAGAEDQDWFKCLS--------HKWKVYLRRNDAGEIDPRGKIWAAPYRWGTMV 109 (380)
Q Consensus 41 ~~Dvv~~~~---~~~~~~~~~gll~pld~~~~~~~~~~~~--------~~~~~~~~~~~~~~~d~~g~~Y~vP~~~~~~g 109 (380)
.|||+.... .++.+++..|+|+||+... .. ++++ .+.+..++. ..+ +|+.||+|+..++.+
T Consensus 93 ~PDi~~~~~~~~~~~~~~~~~g~l~~L~d~~--~~-~~~~~~~~~~~~~~~~~~~~~---~~~--dG~~ygvP~~~~~~~ 164 (450)
T TIGR03851 93 PPDLIDNSGADAMDMSALVAEGQLEDLTPLF--DA-PSWDDPGKKVRDTLLPGVLEP---GTF--DGKPYALNYVYTVYG 164 (450)
T ss_pred CCcEEeecCcccccHHHHHhCCCcccchHHh--cc-ccccccchhHhhhhchhhhhh---ceE--CCEEEEEeecceeeE
Confidence 599998743 3578999999999998642 11 1221 222322221 234 599999999999999
Q ss_pred EEEeccccccCCCCCCCCHHHhcCc--cc--cCce--eeecC--hhHH---HHHHHHHcCCC-CCC--CCh-hhhhc-cc
Q 016927 110 IAYKKSKFRKHNLAPIEDWKDLWRP--EL--AGRI--SMVNS--PREV---IGSVLKYMGAS-YNS--NNI-DLQVA-GG 173 (380)
Q Consensus 110 i~Yn~d~~~~~g~~~p~sW~dL~~~--~~--~gki--~~~~~--~~~~---~~~al~~~G~~-~~~--~~~-~~~~~-~~ 173 (380)
++||+++|+++|+++|+||++|.+. ++ +|.. .+... +... +...+...|+. ... .+. ...+. ..
T Consensus 165 l~YNkdl~~~aGl~~P~Twde~~~~~~~l~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~ 244 (450)
T TIGR03851 165 LWYSATLFEENGWTPPKTWDEFLALGEEAKAKGIAPFAYAGKHAPYYYRELLLDSAAKIGGDEVVKDIDNLEDGAWKHPA 244 (450)
T ss_pred EEEcHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCcceeecCCCCchhHHHHHHHHHHHhcCHHHHHHHHhcCCCCCCCHH
Confidence 9999999999999999999999974 22 2432 22211 1111 11111223322 100 000 00000 11
Q ss_pred hHHHHHHHHHHhh--hcc----cccchhHHHHhHcCCEEEEEechhcHHHHHHcCC-CcEE---EccC-CCc--------
Q 016927 174 KISVQQNLALLAN--QAR----LFDSTHYLKAFGIGDVWVAVGWSSDVLPAVKRMS-NVAV---VVPK-SGA-------- 234 (380)
Q Consensus 174 ~~~~~~~L~~l~~--~v~----~~~~~~~~~~~~~Gev~~~~~~s~~~~~~~~~~~-~i~~---~~P~-eG~-------- 234 (380)
..++.+++.++.. .+. .....+..+.|.+|+++|.+.++.....+.+..+ ++++ .+|. .|.
T Consensus 245 ~~~al~~~~~l~~~g~~~~~~~~~~~~~~~~~f~~G~~a~~~~g~w~~~~~~~~~~~~~~~~~~p~P~~~~~~~~~~~~~ 324 (450)
T TIGR03851 245 VKAAFTAWEELVKKGYILPGGAGLDHTQSQTAWNQGKAAFYPSGSWLENEMKSQTPADFEMTGAPTPSLTASDKLPYGAL 324 (450)
T ss_pred HHHHHHHHHHHHHcCCcCCCCCCCCcHHHHHHHHCCCcEEEEcCccHHHHHhhcCCCCcceeeeecCCCCCcccCCcccc
Confidence 3456666666643 121 1123466788999999998865544333333332 3433 2453 111
Q ss_pred -cceeeeEEEeCCCCCcccccCCCCCCChHHHHHHHHHHhhHHhhchhhhh
Q 016927 235 -SLWADLWAIPAASRLETKQIGGRVRGPSPLIHQWIEFCLQTARALPFKQE 284 (380)
Q Consensus 235 -~~~~d~~~I~k~s~~~~~~~~~~~~~~~~~A~~fi~fllspe~~~~~~~~ 284 (380)
......++|+++++|++ +|++||+|+++++.|..+++.
T Consensus 325 ~~~~g~~~~I~~~s~~~~------------aA~~fl~~l~s~e~~~~~~~~ 363 (450)
T TIGR03851 325 HAAAGEPFIVPAKAKNPA------------GGLEYLRIMLSKEGAANFTEL 363 (450)
T ss_pred cccCCceeEEECCCCCHH------------HHHHHHHHHhCHHHHHHHHHh
Confidence 11246799999999998 999999999999999998865
No 18
>PRK10974 glycerol-3-phosphate transporter periplasmic binding protein; Provisional
Probab=99.71 E-value=6.2e-16 Score=156.15 Aligned_cols=263 Identities=14% Similarity=0.124 Sum_probs=145.6
Q ss_pred CCCceEEEEEEcccHHHHHHhcccchhHhhcCCCCCCCccEEEeCcHHHHHHHHcCcccccccCCCcccc-CCCChhhHH
Q 016927 4 QGKRLKFQMNLCASIDGIVNNLSVPFNKVKAKSAPYMAADLVSVGDSWLSFAIKKRLIEPIAGAEDQDWF-KCLSHKWKV 82 (380)
Q Consensus 4 ~~~~v~v~~~~~gs~~~~~~~~~~~~~kl~ag~~~~~~~Dvv~~~~~~~~~~~~~gll~pld~~~~~~~~-~~~~~~~~~ 82 (380)
++++|+|+.+..+++.+.+++. ++.+.+| . .|||+.+...+...+++.|+|+||+........ .+.+++.+.
T Consensus 52 ~~p~i~V~~~~~~~~~~~~~~~---~~a~~~g-~---~PDv~~~~~~~~~~~~~~g~l~~l~~~~~~~~~~~~~~~~~~~ 124 (438)
T PRK10974 52 SQPDYKIVPVYKGNYEQSLAAG---IAAFRSG-N---APAILQVYEVGTATMMASKAIKPVYDVFKDAGIPFDESQFVPT 124 (438)
T ss_pred hCCCeEEEEeeeccHHHHHHHH---HHHHhCC-C---CCeEEEEecCCHHHHhhCCCcccHHHHHhhcCCCCChHHhchH
Confidence 3456888777665555544432 1112222 2 599999877777889999999999753100000 011233333
Q ss_pred HHhhhCCCccCCCCCEEEeecccceeEEEEeccccccCCCC---CCCCHHHhcCc--ccc--Cce-eee---cChhH--H
Q 016927 83 YLRRNDAGEIDPRGKIWAAPYRWGTMVIAYKKSKFRKHNLA---PIEDWKDLWRP--ELA--GRI-SMV---NSPRE--V 149 (380)
Q Consensus 83 ~~~~~~~~~~d~~g~~Y~vP~~~~~~gi~Yn~d~~~~~g~~---~p~sW~dL~~~--~~~--gki-~~~---~~~~~--~ 149 (380)
..+. ...+-+|+.||+|+..++.+++||+++|+++|+. +|+||++|.+. +++ |.. ++. ..... .
T Consensus 125 ~~~~---~~~~~~G~~YglP~~~~~~~l~YNkdlf~~aGi~~~~~P~Twde~~~~a~~l~~~~~~~g~~~~~~~~~~~~~ 201 (438)
T PRK10974 125 VAGY---YSDAKTGHLLSQPFNSSTPVLYYNKDAFKKAGLDPEQPPKTWQDLAAYAAKLRAAGMKCGYASGWQGWIQLEN 201 (438)
T ss_pred HHhh---cccCCCCcEEEeeccCCCceEEEcHHHHHHcCCCCCCCCCCHHHHHHHHHHHHhcCCCcccccccccchhhhh
Confidence 3221 1111259999999999999999999999999985 59999999874 232 211 111 00000 0
Q ss_pred HHH----HHHHcCCCCCCCChhhhhcc-chHHHHHHHHHHhhh-ccccc--chhHHHHhHcCCEEEEEechhcHHHHHHc
Q 016927 150 IGS----VLKYMGASYNSNNIDLQVAG-GKISVQQNLALLANQ-ARLFD--STHYLKAFGIGDVWVAVGWSSDVLPAVKR 221 (380)
Q Consensus 150 ~~~----al~~~G~~~~~~~~~~~~~~-~~~~~~~~L~~l~~~-v~~~~--~~~~~~~~~~Gev~~~~~~s~~~~~~~~~ 221 (380)
+.. .+...+..+...+....+.. ...++.+.+..+... ...+. .++..+.|.+|+++|.+.+++.+..+++.
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~l~~~g~~~~~~~~~~~~~~f~~Gk~a~~~~gsw~~~~~~~~ 281 (438)
T PRK10974 202 FSAWHGLPFASKNNGFDGTDAVLEFNKPEQVKHIALLEEMNKKGDFTYVGRKDESTEKFYNGDCAITTASSGSLANIRKY 281 (438)
T ss_pred HHHhcCchhcccCCCcCCCcceEEeCCHHHHHHHHHHHHHHHCCCcccCCCcchHhhHhhcCcceEEecChHHHHHHHhc
Confidence 100 01111111111111111111 133455555555331 11111 23456789999999999887766555432
Q ss_pred -CCCcEEE-ccC----CC----ccceeeeEEEeCC--CCCcccccCCCCCCChHHHHHHHHHHhhHHhhchhhhhhcCCC
Q 016927 222 -MSNVAVV-VPK----SG----ASLWADLWAIPAA--SRLETKQIGGRVRGPSPLIHQWIEFCLQTARALPFKQEVIPGA 289 (380)
Q Consensus 222 -~~~i~~~-~P~----eG----~~~~~d~~~I~k~--s~~~~~~~~~~~~~~~~~A~~fi~fllspe~~~~~~~~~~~~~ 289 (380)
..++++. +|. .| +..+..++.|++. ++|++ +|++||+|+++++.|..++.. .++.
T Consensus 282 ~~~~~~v~~~P~~~~~~g~~~~~~~gg~~~~~~~~~~~~~~e------------aA~~fi~fl~s~e~~~~~~~~-~g~l 348 (438)
T PRK10974 282 AKFNYGVGMMPYDADVKGAPQNAIIGGASLWVMQGKDKETYK------------GVAKFLDFLAKPENAAEWHQK-TGYL 348 (438)
T ss_pred CCceeeEEeeccCCCcCCCCCCCCCCCceEEEECCCCHHHHH------------HHHHHHHHHcCHHHHHHHHHh-cCCC
Confidence 2244442 452 12 2233344555543 23455 999999999999999988864 4443
No 19
>COG1653 UgpB ABC-type sugar transport system, periplasmic component [Carbohydrate transport and metabolism]
Probab=99.64 E-value=2.7e-15 Score=149.27 Aligned_cols=252 Identities=17% Similarity=0.217 Sum_probs=152.5
Q ss_pred CCceEEEEEEcccHHHHHHhcccchhHhhcCCCCCCCccEEEeCcHHHHHHHHcCc-ccccccCCCccccCCCChhhHHH
Q 016927 5 GKRLKFQMNLCASIDGIVNNLSVPFNKVKAKSAPYMAADLVSVGDSWLSFAIKKRL-IEPIAGAEDQDWFKCLSHKWKVY 83 (380)
Q Consensus 5 ~~~v~v~~~~~gs~~~~~~~~~~~~~kl~ag~~~~~~~Dvv~~~~~~~~~~~~~gl-l~pld~~~~~~~~~~~~~~~~~~ 83 (380)
+.+|+|+.++.+.. +..+++. +.+.+|. .|||+.+...+...+...|. |.||+... ..-...+...+..
T Consensus 59 ~p~ikv~~~~~~~~-~~~~~l~---~~~~ag~----~PDv~~~~~~~~~~~~~~~~~l~~l~~~~--~~~~~~~~~~~~~ 128 (433)
T COG1653 59 NPGIKVKVVNVPGD-DYLQKLL---TALASGD----APDVVQLDPEWLAAFAKAGGLLEDLTDLI--NPKLDLSDFPPAL 128 (433)
T ss_pred CCCeEEEEEecCcH-HHHHHHH---HHHhcCC----CCCeEEeccchHHHHHhcccccchhhhhh--hcccChhhcCHHh
Confidence 44588888877654 4444421 1233333 47999999888888888877 88887541 0001223333444
Q ss_pred HhhhCCCccCCCCCEEEeecccceeEEEEeccccccCCCCCC-CCHHHhcCc--cc--cCc--eeeecC-------hhHH
Q 016927 84 LRRNDAGEIDPRGKIWAAPYRWGTMVIAYKKSKFRKHNLAPI-EDWKDLWRP--EL--AGR--ISMVNS-------PREV 149 (380)
Q Consensus 84 ~~~~~~~~~d~~g~~Y~vP~~~~~~gi~Yn~d~~~~~g~~~p-~sW~dL~~~--~~--~gk--i~~~~~-------~~~~ 149 (380)
+. ....+|+.||+|+.+.+.+++||+|+|+++|+.+| +||+||... ++ +++ ..+... ....
T Consensus 129 ~~-----~~~~dG~~y~~P~~~~~~~~~ynkdlf~~aG~~~pp~tw~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (433)
T COG1653 129 LD-----TTTYDGKLYGVPFNSSTPALFYNKDLFKKAGLKPPPKTWDELLAAAKKLKEKGGDVYGIAGGGGWQGEDLFFT 203 (433)
T ss_pred Hh-----heeeCCEEeeccccccCceEEEeHHHHHHhCCCCCCCCHHHHHHHHHHHHhhcCCccceeeccccccchhHHH
Confidence 33 22335899999999999999999999999999886 999998753 22 232 222111 1112
Q ss_pred HHHHHHHcCCCCCCCCh-hhhhcc-chHHHHHHHHHHhhh------cccccchhHHH-HhHcCCEEEEEechhcHHHHHH
Q 016927 150 IGSVLKYMGASYNSNNI-DLQVAG-GKISVQQNLALLANQ------ARLFDSTHYLK-AFGIGDVWVAVGWSSDVLPAVK 220 (380)
Q Consensus 150 ~~~al~~~G~~~~~~~~-~~~~~~-~~~~~~~~L~~l~~~------v~~~~~~~~~~-~~~~Gev~~~~~~s~~~~~~~~ 220 (380)
+...+...|......+. ...... ...++.+.+.++... .......+... .|.+|+++|.+.++........
T Consensus 204 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~G~~am~~~g~~~~~~~~~ 283 (433)
T COG1653 204 FALFLGGAGGGFLDKDGGEAFLNDPEAVEALEFLKDLYKKGLLPKGASGYGWDDAGALAFGSGKVAMTIDGTWAIGYFKK 283 (433)
T ss_pred HHHHhhcCCCceecCCCceeccCCHHHHHHHHHHHHHHhcccccCCccccchhhhhhHHHhcCceeeEeeccchhccccc
Confidence 22222334443322211 100111 134555555554332 12222346667 5999999999988877655544
Q ss_pred cC---CCcEEE-ccCC---C---ccceeeeEEEeCCCCC-cccccCCCCCCChHHHHHHHHHHhhHHhhch-hhh
Q 016927 221 RM---SNVAVV-VPKS---G---ASLWADLWAIPAASRL-ETKQIGGRVRGPSPLIHQWIEFCLQTARALP-FKQ 283 (380)
Q Consensus 221 ~~---~~i~~~-~P~e---G---~~~~~d~~~I~k~s~~-~~~~~~~~~~~~~~~A~~fi~fllspe~~~~-~~~ 283 (380)
.. .++++. +|.. | ......+++|++++++ ++ +|++||+|+.+|+.|.. +..
T Consensus 284 ~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~i~~~~~~~~~------------aA~~f~~~l~s~e~q~~~~~~ 346 (433)
T COG1653 284 AAGPKFDIGVAPLPAGPGGGGAAGGVGGGGLGVSKKSKKHKE------------AAWKFLEFLTSPEAQAELLAK 346 (433)
T ss_pred ccccccceeEEeCCCCCCCCCcceeeccceEEeecCCccchH------------HHHHHHHHhcCCchhhhhhhc
Confidence 43 346653 5531 2 2234457899999988 45 99999999999999987 554
No 20
>COG2182 MalE Maltose-binding periplasmic proteins/domains [Carbohydrate transport and metabolism]
Probab=99.63 E-value=5.8e-15 Score=146.15 Aligned_cols=219 Identities=14% Similarity=0.141 Sum_probs=142.2
Q ss_pred CCCccEEEeCcHHHHHHHHcCcccccccCCCccccCCCChhhHHHHhhhCCCccCCCCCEEEeecccceeEEEEeccccc
Q 016927 39 YMAADLVSVGDSWLSFAIKKRLIEPIAGAEDQDWFKCLSHKWKVYLRRNDAGEIDPRGKIWAAPYRWGTMVIAYKKSKFR 118 (380)
Q Consensus 39 ~~~~Dvv~~~~~~~~~~~~~gll~pld~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~Y~vP~~~~~~gi~Yn~d~~~ 118 (380)
+.+|||++..+.++..+.++|+|.||+.+. ....+..+..+.. ..|+ |++||+|....+..|+||||+++
T Consensus 92 GqgpDi~~~~hD~iG~~a~~G~l~~i~~~~-----~~~~~~~~~~~~a---~~y~--GkiYGlP~~~Et~~L~YNKdlv~ 161 (420)
T COG2182 92 GQGPDIFVWAHDRIGGLAEAGLLLEIDPYA-----TKYTDFYPAALVA---ATYK--GKLYGLPQAVETLALYYNKDLVP 161 (420)
T ss_pred CCCCCEEEecchhHHHHHhCCcccccCcch-----hhhhccchhhhhh---hhcC--CEEEeccHhhhhhhhheeccccC
Confidence 357999999999999999999999998762 1122333333221 1354 99999999999999999999999
Q ss_pred cCCCCCCCCHHHhcCc--ccc----Cce-eeecChh---HHHHHHHHHcCCCCCCC-----Chh-hhhc-cchHHHHHHH
Q 016927 119 KHNLAPIEDWKDLWRP--ELA----GRI-SMVNSPR---EVIGSVLKYMGASYNSN-----NID-LQVA-GGKISVQQNL 181 (380)
Q Consensus 119 ~~g~~~p~sW~dL~~~--~~~----gki-~~~~~~~---~~~~~al~~~G~~~~~~-----~~~-~~~~-~~~~~~~~~L 181 (380)
+ +|+||+||..- +.+ |+. +..-+.. ..++. +...|+-+... ++. ...+ .+..+....+
T Consensus 162 ~----~P~T~~el~~~ak~~~~~~~g~~~~~~~~~~~~Y~~y~~-~~~~GgyvF~~~~g~~~~~d~gl~n~G~i~g~~~~ 236 (420)
T COG2182 162 E----PPKTWEELEALAKEAKDKGWGKSHGFLADLTNFYYSYGL-IAGYGGYVFGKENGKYDPKDIGLANAGAIEGANFL 236 (420)
T ss_pred C----CcccHHHHHHHHHHhhhccCCceeeeecchhhhHhhhhh-hccCCcEEecCCCCccchhhccCccccchHHHHHH
Confidence 8 89999999853 222 443 3222222 22332 22333322111 111 1111 1233455566
Q ss_pred HHHhhh-cccc--cchhHHHHhHcCCEEEEEechhcHHHHHHcCCCcEEE-ccCC--C----ccceeeeEEEeCCCCCcc
Q 016927 182 ALLANQ-ARLF--DSTHYLKAFGIGDVWVAVGWSSDVLPAVKRMSNVAVV-VPKS--G----ASLWADLWAIPAASRLET 251 (380)
Q Consensus 182 ~~l~~~-v~~~--~~~~~~~~~~~Gev~~~~~~s~~~~~~~~~~~~i~~~-~P~e--G----~~~~~d~~~I~k~s~~~~ 251 (380)
..+... +..- ..+-...+|..|++++.+.+-..+-.....+.++++. +|.- | ..+.+-+++|++.++|++
T Consensus 237 ~~~~~~g~~~~~~~~~~~~slF~~G~aa~~i~GPW~~~~~~~~g~n~GvaplP~~~~g~~~~pf~Gv~~~~Vsa~skn~~ 316 (420)
T COG2182 237 KSWYKKGLIPEDVAGDFAQSLFTEGKAAAIINGPWSISAYKDAGINYGVAPLPTLNNGKKPKPFSGVKGYVVSAASKNKE 316 (420)
T ss_pred HHHHHcCCCCcccccHHHHHHHhcCCceEEecCCCccchhhhcCcccceeecCCCCCCCCcCCcccceEEEecCCCCcHH
Confidence 555433 1111 1223668999999988886555544444566777764 5641 2 345567899999999998
Q ss_pred cccCCCCCCChHHHHHHHHHHhhHHhhchhhhh
Q 016927 252 KQIGGRVRGPSPLIHQWIEFCLQTARALPFKQE 284 (380)
Q Consensus 252 ~~~~~~~~~~~~~A~~fi~fllspe~~~~~~~~ 284 (380)
+|.+|+.|++.++.+..+...
T Consensus 317 ------------~A~~f~~~~t~~~~~~~~~~~ 337 (420)
T COG2182 317 ------------AAAKFVKYFTNPKNQKLLYDE 337 (420)
T ss_pred ------------HHHHHHHHhhhHHHHHHHHHh
Confidence 999999999999999887654
No 21
>COG4134 ABC-type uncharacterized transport system, periplasmic component [General function prediction only]
Probab=99.61 E-value=2.1e-14 Score=135.01 Aligned_cols=248 Identities=14% Similarity=0.116 Sum_probs=171.8
Q ss_pred hhcCCCCCCCccEEEeCcHHHHHHHHcCcccccccCCCccccCCCChhhHHHHhhhCCCccCCCCCEEEeecccceeEEE
Q 016927 32 VKAKSAPYMAADLVSVGDSWLSFAIKKRLIEPIAGAEDQDWFKCLSHKWKVYLRRNDAGEIDPRGKIWAAPYRWGTMVIA 111 (380)
Q Consensus 32 l~ag~~~~~~~Dvv~~~~~~~~~~~~~gll~pld~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~Y~vP~~~~~~gi~ 111 (380)
+.||...+...|+++.+...++.+..+|+|... -. +.+||+......+-+ ..|...-..+.+||..+.++|+
T Consensus 84 ~AAG~~e~g~VDl~~~~g~n~p~lk~~~~L~~~-~~---~~LPnwr~~d~ql~~----tdf~~pt~Gl~~~~~~~q~~f~ 155 (384)
T COG4134 84 LAAGRDEGGSVDLLWINGENFPTLKEAGLLYTP-WA---EDLPNWRYVDHQLPR----TDFSVPTEGLESPWGGNQLVFI 155 (384)
T ss_pred HhcccccCCceEEEEecCccchhhhhccccccc-hh---hhCccchhhchhccc----cccCCCCCcccccccCCcceEE
Confidence 455655444599999999999999999988765 22 235666554443211 1122222348999999999999
Q ss_pred EeccccccCCCCCCCCHHHhcC--ccccCceeeecChh----HHH-HHHHHHc-CCCC--C-CCChhhhhccchHHHHHH
Q 016927 112 YKKSKFRKHNLAPIEDWKDLWR--PELAGRISMVNSPR----EVI-GSVLKYM-GASY--N-SNNIDLQVAGGKISVQQN 180 (380)
Q Consensus 112 Yn~d~~~~~g~~~p~sW~dL~~--~~~~gki~~~~~~~----~~~-~~al~~~-G~~~--~-~~~~~~~~~~~~~~~~~~ 180 (380)
|++++.+. +|+|.+||+. .+..+|+++...+. ..| ..++..+ |... + ..|+. .+.+.+..++++
T Consensus 156 yd~~k~~~----~P~s~eeLL~wA~aNP~rf~Y~~P~~gg~G~~Fl~~~~i~Lt~d~~~l~~avDpa-t~~k~~~p~WqY 230 (384)
T COG4134 156 YDRDKVPQ----VPQSFEELLVWAKANPKRFGYPRPPNGGTGTAFLKQLLIMLTGDAAALQQAVDPA-TFAKVWAPLWQY 230 (384)
T ss_pred EccccCCC----CCcCHHHHHHHHHhCcCccccCCCCCCCccHhHHHHHHHHhcCchHhhcCCCChH-HHHhhccHHHHH
Confidence 99999886 9999999975 57788998865332 222 2222233 3211 1 22332 233457788999
Q ss_pred HHHHhhhccccc--chhHHHHhHcCCEEEEEechhcHHHHHHcCC---CcEEEccCCCccceeeeEEEeCCCCCcccccC
Q 016927 181 LALLANQARLFD--STHYLKAFGIGDVWVAVGWSSDVLPAVKRMS---NVAVVVPKSGASLWADLWAIPAASRLETKQIG 255 (380)
Q Consensus 181 L~~l~~~v~~~~--~~~~~~~~~~Gev~~~~~~s~~~~~~~~~~~---~i~~~~P~eG~~~~~d~~~I~k~s~~~~~~~~ 255 (380)
|.+|.+++-... ..++.+++..|+..|++.|...+...+..|. ...+..++.|.....+.++||+|+++++
T Consensus 231 l~~L~~~i~r~~kg~Adml~lL~dG~l~l~~t~~~~~~s~~~tG~lp~s~~~~~~~~G~vgn~~f~aIPaNa~~~A---- 306 (384)
T COG4134 231 LDELHPYIWRTGKGPADMLQLLNDGTLYLTLTFPDHASSAIATGDLPASARSFALEKGMVGNGHFMAIPANANAKA---- 306 (384)
T ss_pred HHHhhhhhhhcCCCHHHHHHHhcCCcEEEeecchhhhhcchhccCCchHhhhhhhccccccCcceEEecCCCCCch----
Confidence 999998875443 4588899999999999999777777766553 3556678889988899999999999998
Q ss_pred CCCCCChHHHHHHHHHHhhHHhhchhhhhhcCCCCCCccccccccCChhHhc
Q 016927 256 GRVRGPSPLIHQWIEFCLQTARALPFKQEVIPGASPSALETTLVKLPEELLK 307 (380)
Q Consensus 256 ~~~~~~~~~A~~fi~fllspe~~~~~~~~~~~~~~p~~~~~a~~~l~~e~~~ 307 (380)
.|..||||++|||.|.+=.+..+ ...|+. -.-..+|+..++
T Consensus 307 --------~alvl~n~lls~EaQlrk~d~~v-~~~P~~--l~pq~lpda~qe 347 (384)
T COG4134 307 --------AALVLANFLLSPEAQLRKLDPAV-WGDPSV--LDPQLLPDAQQE 347 (384)
T ss_pred --------HHHHHHHHhcCHHHHHhhhcccc-cCCccc--cCcccChhhHhh
Confidence 99999999999999965443323 346753 223355555544
No 22
>PF01547 SBP_bac_1: Bacterial extracellular solute-binding protein; InterPro: IPR006059 Bacterial high affinity transport systems are involved in active transport of solutes across the cytoplasmic membrane. The protein components of these traffic systems include one or two transmembrane protein components, one or two membrane-associated ATP-binding proteins and a high affinity periplasmic solute-binding protein. In Gram-positive bacteria, which are surrounded by a single membrane and therefore have no periplasmic region, the equivalent proteins are bound to the membrane via an N-terminal lipid anchor. These homologue proteins do not play an integral role in the transport process per se, but probably serve as receptors to trigger or initiate translocation of the solute through the membrane by binding to external sites of the integral membrane proteins of the efflux system. In addition at least some solute-binding proteins function in the initiation of sensory transduction pathways. On the basis of sequence similarities, the vast majority of these solute-binding proteins can be grouped into eight family clusters [], which generally correlate with the nature of the solute bound. Family 1 includes the maltose/maltodextrin-binding proteins of Enterobacteriaceae (gene malE) [] and Streptococcus pneumoniae malX; multiple oligosaccharide binding protein of Streptococcus mutans (gene msmE); Escherichia coli glycerol-3-phosphate-binding protein; Serratia marcescens iron-binding protein (gene sfuA) and the homologous proteins (gene fbp) from Haemophilus influenzae and Neisseria; and the E. coli thiamine-binding protein (gene tbpA).; GO: 0005215 transporter activity, 0006810 transport; PDB: 3CFZ_A 2THI_A 3THI_A 4THI_A 1O7T_C 1D9Y_A 1URG_A 1URS_A 1URD_B 3OMB_A ....
Probab=99.60 E-value=1.2e-15 Score=145.21 Aligned_cols=243 Identities=16% Similarity=0.208 Sum_probs=142.0
Q ss_pred CCceEEEEEEcccHHHHHHhcccchhHhhcCCCCCCCccEEEeCcHHHHHHHHcCcccccccCCCccccCCCChh----h
Q 016927 5 GKRLKFQMNLCASIDGIVNNLSVPFNKVKAKSAPYMAADLVSVGDSWLSFAIKKRLIEPIAGAEDQDWFKCLSHK----W 80 (380)
Q Consensus 5 ~~~v~v~~~~~gs~~~~~~~~~~~~~kl~ag~~~~~~~Dvv~~~~~~~~~~~~~gll~pld~~~~~~~~~~~~~~----~ 80 (380)
+.+|+|+++..+ ..+..+++. +.+.+|.. .+||+.++..++..+++.|+|.||+.............. .
T Consensus 22 ~~~i~V~~~~~~-~~~~~~~~~---~~~~sg~~---p~Dv~~~~~~~~~~~~~~g~l~~L~~~~~~~~~~~~~~~~~~~~ 94 (315)
T PF01547_consen 22 HPGIKVEIEFIP-WDDYQQKLN---TALASGDA---PYDVIFIDNDWLPQLAEAGLLMDLDDYLEKYAPDWKKDFADNLI 94 (315)
T ss_dssp HTTEEEEEEEET-HHHHHHHHH---HHHHTTGS---SESEEEEEGHHHHHHHHTTSBEHCHHHHHHHTHHCCSHCHHCCH
T ss_pred CCCcEEEEEECC-CccHHHHHH---HHHHcCCC---hhheEEeccccchhhhhhhccCcCCHHHhhccccccccccccch
Confidence 456888777763 344544431 22455553 359999988899999999999999974200000011100 0
Q ss_pred HHHHhhhCCCccCCCCCEEEeecccceeEEEEeccccccCCCCCCCCHHHhcCc--ccc--Cc-e-eee---cChhH---
Q 016927 81 KVYLRRNDAGEIDPRGKIWAAPYRWGTMVIAYKKSKFRKHNLAPIEDWKDLWRP--ELA--GR-I-SMV---NSPRE--- 148 (380)
Q Consensus 81 ~~~~~~~~~~~~d~~g~~Y~vP~~~~~~gi~Yn~d~~~~~g~~~p~sW~dL~~~--~~~--gk-i-~~~---~~~~~--- 148 (380)
..+... .++..+ .| +|+.. ..+++||+++|+++|+++|+||+||.+. +++ +. . .+. .....
T Consensus 95 ~~~~~~----~~~~~~-~y-vP~~~-~~~~~ynkdl~~~~Gl~~p~Twde~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (315)
T PF01547_consen 95 SSFDPK----IFDSKG-IY-VPYSG-PNGLYYNKDLFEKAGLDPPWTWDEFLEAAKKIKEKGPDPYGIAFGGSDSWDAYW 167 (315)
T ss_dssp HHBCHH----HHHHEE-ES-EEEEE-EEEEEEETTTHHHTTSSSTSBHHHHHHHHHHHHHTTTCECEECCTEESHHHHHH
T ss_pred hhhhhh----eEecce-EE-EEeee-eeEEEEchhHHHHcCCCCCCCHHHHHHHHHHHHhcCCCCceEEeccCccccchH
Confidence 001000 000013 89 99994 8899999999999999999999999975 222 11 1 111 11111
Q ss_pred HHHHHHHHcCCCCCC------CChhhhhccchHHHHHHHHHHh-------h----hcccccchhHHHHhHcCCEEEEEec
Q 016927 149 VIGSVLKYMGASYNS------NNIDLQVAGGKISVQQNLALLA-------N----QARLFDSTHYLKAFGIGDVWVAVGW 211 (380)
Q Consensus 149 ~~~~al~~~G~~~~~------~~~~~~~~~~~~~~~~~L~~l~-------~----~v~~~~~~~~~~~~~~Gev~~~~~~ 211 (380)
.+...+...|..... .++. .......+..+. . .....+..+..+.|.+|+++|.+.+
T Consensus 168 ~~~~~~~~~g~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~g~~~~~~~~ 241 (315)
T PF01547_consen 168 FFQAFAWSFGGYWFDEDGKGFDDPE------AVEALKYYKKLYYEKLWKKGYFPPDAVSSDWDQAQQAFASGKVAMIIDG 241 (315)
T ss_dssp HHHHHHHHTTHEEEEEETCESCSHH------HHHHHHHHHHHHHHHHHHCHHTTTTETTSSHHHHHHHHHTTSEEEEEEE
T ss_pred HHHHHHHhcCceeecCCccccCCHH------HHHHHHHHHHHHHhhhhhhcccCCCccccCHHHHHHHHhCCCceEEEec
Confidence 122223344422110 1121 111222222222 1 1122334567789999999999988
Q ss_pred hhcHH---------HHH----HcCCCcEEE-ccC--CCc--cceeeeEEEeCCCCCcccccCCCCCCChHHHHHHHHHHh
Q 016927 212 SSDVL---------PAV----KRMSNVAVV-VPK--SGA--SLWADLWAIPAASRLETKQIGGRVRGPSPLIHQWIEFCL 273 (380)
Q Consensus 212 s~~~~---------~~~----~~~~~i~~~-~P~--eG~--~~~~d~~~I~k~s~~~~~~~~~~~~~~~~~A~~fi~fll 273 (380)
++.+. ... ....++.+. +|. .|. ....++++|+++++|++ +|++||+||+
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~I~~~sk~~e------------~A~~fl~~l~ 309 (315)
T PF01547_consen 242 SWYALNWMKVEPQSAFNQNSPPVKFDWGFAPFPAGPGGGPPIGGGDGIAISKNSKNPE------------AAWKFLDFLT 309 (315)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTTTTEEEECEEBETTEETCSEEEEEEEEBTTSSTHH------------HHHHHHHHHT
T ss_pred cccccccccccccccccccccccccccceeccCccCCCCCccccceEEEEECCCCCHH------------HHHHHHHHhC
Confidence 77621 111 123356654 453 221 14677899999999998 9999999999
Q ss_pred hHHhhc
Q 016927 274 QTARAL 279 (380)
Q Consensus 274 spe~~~ 279 (380)
++|.|.
T Consensus 310 s~e~Q~ 315 (315)
T PF01547_consen 310 SPEGQK 315 (315)
T ss_dssp SHHHHH
T ss_pred ChhhCC
Confidence 999883
No 23
>TIGR00971 3a0106s03 sulfate/thiosulfate-binding protein. This model describes binding proteins functionally associated with the sulfate ABC transporter. In the model bacterium E. coli, two different members work with the same transporter; mutation analysis says each enables the uptake of both sulfate and thiosulfate. In many species, a single binding protein is found, and may be referred to in general terms as a sulfate ABC transporter sulfate-binding protein.
Probab=99.56 E-value=2.9e-13 Score=131.02 Aligned_cols=213 Identities=19% Similarity=0.233 Sum_probs=139.0
Q ss_pred CCceEEEEEEcccHHHHHHhcccchhHhhcCCCCCCCccEEEeCc-HHHHHHHHcCcccccccCCCccccCCCChhhHHH
Q 016927 5 GKRLKFQMNLCASIDGIVNNLSVPFNKVKAKSAPYMAADLVSVGD-SWLSFAIKKRLIEPIAGAEDQDWFKCLSHKWKVY 83 (380)
Q Consensus 5 ~~~v~v~~~~~gs~~~~~~~~~~~~~kl~ag~~~~~~~Dvv~~~~-~~~~~~~~~gll~pld~~~~~~~~~~~~~~~~~~ 83 (380)
|.+|+|+.+|+||- .+.+. |+.|. .+||+...+ .++..+.+.|++.+-.. ..
T Consensus 41 g~~v~v~~~~g~Sg-~l~~Q-------i~~Ga----~~Dvf~sa~~~~~~~l~~~g~i~~~~~----------~~----- 93 (315)
T TIGR00971 41 GDNVVIRQSHGGSG-KQATS-------VINGI----EADVVTLALAYDVDAIAERGRIDKDWI----------KR----- 93 (315)
T ss_pred CCceEEEEecCCcH-HHHHH-------HHcCC----CcCEEecCCHHHHHHHHHCCCCCcchh----------hh-----
Confidence 34455666777665 33333 44443 388888876 47778888877653211 00
Q ss_pred HhhhCCCccCCCCCEEEeecccceeEEEEeccccccCCCCCCCCHHHhcCccccCceeeecChhHHHHH---HHHHcCCC
Q 016927 84 LRRNDAGEIDPRGKIWAAPYRWGTMVIAYKKSKFRKHNLAPIEDWKDLWRPELAGRISMVNSPREVIGS---VLKYMGAS 160 (380)
Q Consensus 84 ~~~~~~~~~d~~g~~Y~vP~~~~~~gi~Yn~d~~~~~g~~~p~sW~dL~~~~~~gki~~~~~~~~~~~~---al~~~G~~ 160 (380)
+- .| ++||. +.++|+|+++... .|+||+||+++.+ +|++.+ |..+... .+...|..
T Consensus 94 --------~~-~n---~~~~~-~~lvl~v~k~~~~-----~i~sw~dL~~~~~--kiai~d-p~~sg~~~~~~L~~~g~~ 152 (315)
T TIGR00971 94 --------LP-DN---SAPYT-STIVFLVRKGNPK-----QIHDWNDLIKPGV--SVITPN-PKSSGGARWNYLAAWGYA 152 (315)
T ss_pred --------Cc-cC---CCccc-eeEEEEEeCCCCC-----CCCCHHHHhCCCc--EEEeCC-hhhHHHHHHHHHHHHHHH
Confidence 10 01 36776 6899999988653 4789999999865 577755 4433211 12222332
Q ss_pred CCCCChhhhhccchHHHHHHHHHHhhhcccccch---hHHHHhHcCCEEEEEechhcHHHHHHc--CCCcEEEccCCCcc
Q 016927 161 YNSNNIDLQVAGGKISVQQNLALLANQARLFDST---HYLKAFGIGDVWVAVGWSSDVLPAVKR--MSNVAVVVPKSGAS 235 (380)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~L~~l~~~v~~~~~~---~~~~~~~~Gev~~~~~~s~~~~~~~~~--~~~i~~~~P~eG~~ 235 (380)
......+ .++++++|..+.+++..+..+ +....+.+|++++++.|.+++...+.. +.++.+++|++|..
T Consensus 153 ~~~~~g~------~~~a~~~l~~l~~nv~~~~~~~~~~~~~~v~~Ge~dagivy~sda~~~~~~~~~~~i~iviP~e~~~ 226 (315)
T TIGR00971 153 LHHNNGD------QAKAQQFVTALLKNVEVLDSGARGATNTFVERGIGDVLIAWENEALLARKELGKDKFEIVTPSESIL 226 (315)
T ss_pred hhhcCCC------HHHHHHHHHHHHhhccccCCCchHHHHHHHHcCceeEEEEEcHHHHHHHHhcCCCCeEEEECCCCcc
Confidence 2111111 346788999999998877433 355567799999999999997765543 35899999998766
Q ss_pred ceeeeEEEeC----CCCCcccccCCCCCCChHHHHHHHHHHhhHHhhchhhhh
Q 016927 236 LWADLWAIPA----ASRLETKQIGGRVRGPSPLIHQWIEFCLQTARALPFKQE 284 (380)
Q Consensus 236 ~~~d~~~I~k----~s~~~~~~~~~~~~~~~~~A~~fi~fllspe~~~~~~~~ 284 (380)
.... +++.+ .+++++ +|.+|+||++|+|.|..+.+.
T Consensus 227 i~~~-iavv~~~~~~~~~~e------------~A~~FidfLlS~eaq~i~ak~ 266 (315)
T TIGR00971 227 AEPT-VSVVDKVVEKKGTKK------------VAEAYLKYLYSPEGQEIAAKN 266 (315)
T ss_pred cccc-EEEEEcccCCCCCHH------------HHHHHHHHhcCHHHHHHHHHc
Confidence 5554 44443 345666 999999999999999999863
No 24
>TIGR01256 modA molybdenum ABC transporter, periplasmic molybdate-binding protein. The model describes the molybdate ABC transporter periplasmic binding protein in bacteria and archae. Several of the periplasmic receptors constitute a diverse class of binding proteins that differ widely in size, sequence and ligand specificity. It has been shown experimentally by radioactive labeling that ModA represent hydrophylioc periplasmic-binding protein in gram-negative organisms and its counterpart in gram-positive organisms is a lipoprotein. The other components of the system include the ModB, an integral membrane protein and ModC the ATP-binding subunit. Invariably almost all of them display a common beta/alpha folding motif and have similar tertiary structures consisting of two globular domains.
Probab=99.55 E-value=1e-13 Score=126.68 Aligned_cols=188 Identities=15% Similarity=0.167 Sum_probs=131.5
Q ss_pred ceEEEEEEcccHHHHHHhcccchhHhhcCCCCCCCccEEEeCcH-HHHHHHHcCcccccccCCCccccCCCChhhHHHHh
Q 016927 7 RLKFQMNLCASIDGIVNNLSVPFNKVKAKSAPYMAADLVSVGDS-WLSFAIKKRLIEPIAGAEDQDWFKCLSHKWKVYLR 85 (380)
Q Consensus 7 ~v~v~~~~~gs~~~~~~~~~~~~~kl~ag~~~~~~~Dvv~~~~~-~~~~~~~~gll~pld~~~~~~~~~~~~~~~~~~~~ 85 (380)
+++|++.++|+. ++.+. |+.+. .+||++..+. .+..+.+.|++.|.+.. .
T Consensus 20 gi~V~~~~~gs~-~l~~~-------l~~~~----~aDv~~~~~~~~~~~l~~~g~~~~~~~~-------~---------- 70 (216)
T TIGR01256 20 GNKVVFSFGSSG-TLYTQ-------IENGA----PADLFISADNKWPKKLVDKGLVVAGSRF-------T---------- 70 (216)
T ss_pred CCeEEEEeCChH-HHHHH-------HHcCC----CCcEEEECCHHHHHHHHHCCCCCCCchh-------e----------
Confidence 488888878766 34444 55432 4999999874 67788888988775420 0
Q ss_pred hhCCCccCCCCCEEEeecccceeEEEEeccccccCCCCCCCCHHHhcCccc-cCceeeecChhHHHHHH----HHHcCCC
Q 016927 86 RNDAGEIDPRGKIWAAPYRWGTMVIAYKKSKFRKHNLAPIEDWKDLWRPEL-AGRISMVNSPREVIGSV----LKYMGAS 160 (380)
Q Consensus 86 ~~~~~~~d~~g~~Y~vP~~~~~~gi~Yn~d~~~~~g~~~p~sW~dL~~~~~-~gki~~~~~~~~~~~~a----l~~~G~~ 160 (380)
+..+.++++||++ . .|+||+||. +.+ +++|.+.+......+.. +...|
T Consensus 71 -----------------~~~~~~~l~~~~~---~----~~~s~~dL~-~~~~~~~i~~~~P~~~~~g~~~~~~~~~~g-- 123 (216)
T TIGR01256 71 -----------------YAGNKLVLISPKN---R----VVDDLDILK-KWVADKRVAIGDPKHAPYGAAAKEVLQKLG-- 123 (216)
T ss_pred -----------------EEccEEEEEEECC---C----CcCcHHHHh-hcccCCeEEecCCCcCcChHHHHHHHHHCC--
Confidence 1124578899987 2 579999997 666 68999976332222211 11111
Q ss_pred CCCCChhhhhccchHHHHHHHHHHhhhcccccc-hhHHHHhHcCCEEEEEechhcHHHHHHcCCCcEEEccCCCccceee
Q 016927 161 YNSNNIDLQVAGGKISVQQNLALLANQARLFDS-THYLKAFGIGDVWVAVGWSSDVLPAVKRMSNVAVVVPKSGASLWAD 239 (380)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~L~~l~~~v~~~~~-~~~~~~~~~Gev~~~~~~s~~~~~~~~~~~~i~~~~P~eG~~~~~d 239 (380)
.+.++++++....+ .+..+.+.+|++++++.|.+++.... +....+++|+++......
T Consensus 124 -------------------~~~~l~~n~~~~~~~~~~~~~~~~Ge~~~~~~~~~~~~~~~--~~~~~~~~P~~~~~~~~~ 182 (216)
T TIGR01256 124 -------------------LWETLKKKLVYGEDVRQALQFVETGNAPAGIVALSDVIPSK--KVGSVATFPEDLYKPIRY 182 (216)
T ss_pred -------------------ChhhhhhheeecCcHHHHHHHHHcCCCCEEeeehhhhcccC--CccEEEEeCccccCCccc
Confidence 22345555533223 46778899999999999998765443 233557889998877778
Q ss_pred eEEEeCCCCCcccccCCCCCCChHHHHHHHHHHhhHHhhchhhh
Q 016927 240 LWAIPAASRLETKQIGGRVRGPSPLIHQWIEFCLQTARALPFKQ 283 (380)
Q Consensus 240 ~~~I~k~s~~~~~~~~~~~~~~~~~A~~fi~fllspe~~~~~~~ 283 (380)
+++|+++++|++ +|.+||+|++||+.|..+.+
T Consensus 183 ~~ai~k~a~~~~------------~A~~fi~fl~s~e~q~~~~~ 214 (216)
T TIGR01256 183 PAVIVKGGKNNA------------AAKAFIDYLKSPEAKEILRK 214 (216)
T ss_pred cEEEEECCCChH------------HHHHHHHHHcCHHHHHHHHH
Confidence 999999999998 99999999999999987764
No 25
>PRK10852 thiosulfate transporter subunit; Provisional
Probab=99.53 E-value=5.1e-13 Score=130.18 Aligned_cols=208 Identities=17% Similarity=0.205 Sum_probs=139.6
Q ss_pred CCceEEEEEEcccHHHHHHhcccchhHhhcCCCCCCCccEEEeCc-HHHHHHHHcCcccccccCCCccccCCCChhhHHH
Q 016927 5 GKRLKFQMNLCASIDGIVNNLSVPFNKVKAKSAPYMAADLVSVGD-SWLSFAIKKRLIEPIAGAEDQDWFKCLSHKWKVY 83 (380)
Q Consensus 5 ~~~v~v~~~~~gs~~~~~~~~~~~~~kl~ag~~~~~~~Dvv~~~~-~~~~~~~~~gll~pld~~~~~~~~~~~~~~~~~~ 83 (380)
|.+|+|+.+++||-..+.+- ..|. ..||+.... .++..+.+.|.+.+-+. ...
T Consensus 57 g~~v~i~~s~ggSg~~~~qi--------~~G~----~ADV~~~A~~~~~d~l~~~g~li~~~~----------~~~---- 110 (338)
T PRK10852 57 GDKLTIKQSHAGSSKQALAI--------LQGL----KADVVTYNQVTDVQILHDKGKLIPADW----------QSR---- 110 (338)
T ss_pred CCceEEEEcCCCcHHHHHHH--------hcCC----CcCEEecCCHHHHHHHHHCCCCCCcch----------hhc----
Confidence 45566677888877666543 2332 489998876 47888888885443221 010
Q ss_pred HhhhCCCccCCCCCEEEeecccceeEEEEeccccccCCCCCCCCHHHhcCccccCceeeecChhHHHH----H-HHH---
Q 016927 84 LRRNDAGEIDPRGKIWAAPYRWGTMVIAYKKSKFRKHNLAPIEDWKDLWRPELAGRISMVNSPREVIG----S-VLK--- 155 (380)
Q Consensus 84 ~~~~~~~~~d~~g~~Y~vP~~~~~~gi~Yn~d~~~~~g~~~p~sW~dL~~~~~~gki~~~~~~~~~~~----~-al~--- 155 (380)
+ + + .++|| +++++|+||++.-+ .|+||+||+++.+ +|.+.+......+ + ++.
T Consensus 111 --------~-~-~--n~~p~-~s~lV~vv~kgnpk-----~i~sw~DL~~~~~--kI~i~nP~tSg~g~~~~La~~~~~~ 170 (338)
T PRK10852 111 --------L-P-N--NSSPF-YSTMAFLVRKGNPK-----NIHDWNDLVRSDV--KLIFPNPKTSGNARYTYLAAWGAAD 170 (338)
T ss_pred --------c-c-c--cCCcc-cceEEEEEECCCCC-----CCCCHHHhcCCCc--EEEECCCCcchHHHHHHHHHHHHHH
Confidence 1 1 1 15787 78899999998653 5899999999765 5888763211111 1 111
Q ss_pred -HcCCCCCCCChhhhhccchHHHHHHHHHHhhhcccccch---hHHHHhHcCCEEEEEechhcHHHHHHc--CCCcEEEc
Q 016927 156 -YMGASYNSNNIDLQVAGGKISVQQNLALLANQARLFDST---HYLKAFGIGDVWVAVGWSSDVLPAVKR--MSNVAVVV 229 (380)
Q Consensus 156 -~~G~~~~~~~~~~~~~~~~~~~~~~L~~l~~~v~~~~~~---~~~~~~~~Gev~~~~~~s~~~~~~~~~--~~~i~~~~ 229 (380)
..|. +. .++++++.++..++..+... .....+.+|++++++.|..++....++ ..++.+++
T Consensus 171 ~~~G~-----d~--------~~a~~~l~~l~~Nv~v~~~~~~~a~~~~v~~Ge~Dvgi~yesda~~~~~~~~~~~~~iV~ 237 (338)
T PRK10852 171 KADGG-----DK--------AKTEQFMTQFLKNVEVFDTGGRGATTTFAERGLGDVLISFESEVNNIRKQYEAQGYEVVV 237 (338)
T ss_pred HHcCC-----Ch--------HHHHHHHHHHHhcCCEecCCCcHHHHHHHHcCCccEEEEechHHHHHHHhcCCCCeEEEe
Confidence 1121 11 24688999999988877432 455667889999999998887655443 35788899
Q ss_pred cCCCccceeeeEEEe-CC---CCCcccccCCCCCCChHHHHHHHHHHhhHHhhchhhhh
Q 016927 230 PKSGASLWADLWAIP-AA---SRLETKQIGGRVRGPSPLIHQWIEFCLQTARALPFKQE 284 (380)
Q Consensus 230 P~eG~~~~~d~~~I~-k~---s~~~~~~~~~~~~~~~~~A~~fi~fllspe~~~~~~~~ 284 (380)
|++|..... .++|. ++ ++|++ +|.+|++|++|+|.|..+.+.
T Consensus 238 P~~~~~~~~-pvAvv~k~~~~~~~~e------------~AkaFidfL~S~eaQ~i~ak~ 283 (338)
T PRK10852 238 PKTNILAEF-PVAWVDKNVQANGTEK------------AAKAYLNYLYSPQAQTIITDF 283 (338)
T ss_pred CCCCceeee-eEEEEEeccccCCCHH------------HHHHHHHHhcCHHHHHHHHHc
Confidence 988875544 55555 55 45566 999999999999999998863
No 26
>PRK10752 sulfate transporter subunit; Provisional
Probab=99.50 E-value=1e-12 Score=127.57 Aligned_cols=215 Identities=18% Similarity=0.201 Sum_probs=137.4
Q ss_pred CCceEEEEEEcccHHHHHHhcccchhHhhcCCCCCCCccEEEeCc-HHHHHHHHcCcccccccCCCccccCCCChhhHHH
Q 016927 5 GKRLKFQMNLCASIDGIVNNLSVPFNKVKAKSAPYMAADLVSVGD-SWLSFAIKKRLIEPIAGAEDQDWFKCLSHKWKVY 83 (380)
Q Consensus 5 ~~~v~v~~~~~gs~~~~~~~~~~~~~kl~ag~~~~~~~Dvv~~~~-~~~~~~~~~gll~pld~~~~~~~~~~~~~~~~~~ 83 (380)
|.+|+|..+++||- ++.+. |..|. .+||++..+ .++..+.++|++++=. ...+..
T Consensus 52 G~~V~v~~s~ggSg-~l~~q-------I~~g~----~aDV~~~a~~~~~~~l~~~gli~~~~-------~~~l~~----- 107 (329)
T PRK10752 52 GDNVVIRQSHGGSG-KQATS-------VINGI----EADVVTLALAYDVDAIAERGRIDKNW-------IKRLPD----- 107 (329)
T ss_pred CCceEEEeCCCChH-HHHHH-------HHcCC----CCCEEEeCCHHHHHHHHHCCCCCCcc-------hhhhhc-----
Confidence 55677766777775 44444 44442 599999987 5888888899988611 111110
Q ss_pred HhhhCCCccCCCCCEEEeecccceeEEEEeccccccCCCCCCCCHHHhcCccccCceeeecChhHHHH--HHHHHcCCCC
Q 016927 84 LRRNDAGEIDPRGKIWAAPYRWGTMVIAYKKSKFRKHNLAPIEDWKDLWRPELAGRISMVNSPREVIG--SVLKYMGASY 161 (380)
Q Consensus 84 ~~~~~~~~~d~~g~~Y~vP~~~~~~gi~Yn~d~~~~~g~~~p~sW~dL~~~~~~gki~~~~~~~~~~~--~al~~~G~~~ 161 (380)
+ + .|| ++.++|++++..-+ .|++|+||+++.+ +|.+.+.....-+ ..+...+..+
T Consensus 108 ------------n--~-~~~-~~~lviiv~~gnp~-----~i~~w~DL~~~~~--~I~i~dP~tSGta~~~~laa~~~~l 164 (329)
T PRK10752 108 ------------N--S-APY-TSTIVFLVRKGNPK-----QIHDWNDLIKPGV--SVITPNPKSSGGARWNYLAAWGYAL 164 (329)
T ss_pred ------------c--c-ccc-ceeEEEEEECCCCC-----CCCCHHHhcCCCc--EEEECCCCcchHHHHHHHHHHHHHH
Confidence 1 1 133 46678999887543 4789999999865 6888763221111 1111111100
Q ss_pred CCCChhhhhccchHHHHHHHHHHhhhcccccch---hHHHHhHcCCEEEEEechhcHHHHHHc--CCCcEEEccCCCccc
Q 016927 162 NSNNIDLQVAGGKISVQQNLALLANQARLFDST---HYLKAFGIGDVWVAVGWSSDVLPAVKR--MSNVAVVVPKSGASL 236 (380)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~L~~l~~~v~~~~~~---~~~~~~~~Gev~~~~~~s~~~~~~~~~--~~~i~~~~P~eG~~~ 236 (380)
.....+ .+++++++.+|+.|+..+..+ .....+.+|+.++.++|...+....++ +.++++++|++|...
T Consensus 165 ~~~~g~------~~~a~~~l~kL~~Nv~~~~~~~~~a~~~~v~~g~gdv~I~~e~~a~~~~~~~~g~~veiV~P~~g~~~ 238 (329)
T PRK10752 165 HHNNND------QAKAQDFVKALYKNVEVLDSGARGSTNTFVERGIGDVLIAWENEALLAANELGKDKFEIVTPSESILA 238 (329)
T ss_pred hccCCC------HHHHHHHHHHHHhcCCcccCCCcchhhHHHHcCeeeEEEEechHHHHHHHHhCCCCEEEEECCCCccc
Confidence 000011 236789999999998766322 233445678999899998887655443 679999999988544
Q ss_pred eeeeEEE---eCCCCCcccccCCCCCCChHHHHHHHHHHhhHHhhchhhhh
Q 016927 237 WADLWAI---PAASRLETKQIGGRVRGPSPLIHQWIEFCLQTARALPFKQE 284 (380)
Q Consensus 237 ~~d~~~I---~k~s~~~~~~~~~~~~~~~~~A~~fi~fllspe~~~~~~~~ 284 (380)
......| .++++|++ +|++||||++|+|.|..+.+.
T Consensus 239 ~~~va~v~~~~k~~~~~e------------~Ak~FidfllS~eaQ~i~a~~ 277 (329)
T PRK10752 239 EPTVSVVDKVVDKKGTRE------------VAEAYLKYLYSPEGQEIAAKN 277 (329)
T ss_pred cceeEEEEeccccCCCHH------------HHHHHHHHhcCHHHHHHHHHc
Confidence 3332223 46788887 999999999999999998653
No 27
>PF13531 SBP_bac_11: Bacterial extracellular solute-binding protein; PDB: 2HXW_B 3FJG_C 3FJM_B 3FJ7_B 3FIR_B 3AXF_C 1WOD_A 1AMF_A 3R26_A 1SBP_A ....
Probab=99.27 E-value=2.2e-10 Score=105.58 Aligned_cols=194 Identities=23% Similarity=0.320 Sum_probs=128.8
Q ss_pred CceEEEEEEcccHHHHHHhcccchhHhhcCCCCCCCccEEEeCcH-HHHHHHHcCcccccccCCCccccCCCChhhHHHH
Q 016927 6 KRLKFQMNLCASIDGIVNNLSVPFNKVKAKSAPYMAADLVSVGDS-WLSFAIKKRLIEPIAGAEDQDWFKCLSHKWKVYL 84 (380)
Q Consensus 6 ~~v~v~~~~~gs~~~~~~~~~~~~~kl~ag~~~~~~~Dvv~~~~~-~~~~~~~~gll~pld~~~~~~~~~~~~~~~~~~~ 84 (380)
.+++|+++++|+- ++.+. |++|. .+||++..+. ++.++.++|++.|
T Consensus 24 ~g~~v~v~~~~s~-~~~~~-------l~~g~----~~Dv~~~~~~~~~~~l~~~g~~~~--------------------- 70 (230)
T PF13531_consen 24 PGIKVEVSFGGSG-ELVRR-------LQAGK----KPDVFIPASSEWLERLAAAGLVDP--------------------- 70 (230)
T ss_dssp HCEEEEEEEECHH-HHHHH-------HHTT-----S-SEEEESSHHHHHHHHHTTTCSG---------------------
T ss_pred cCCeEEEEECChH-HHHHH-------HhcCC----CceEEEECCHHHHHHHHhcccccC---------------------
Confidence 3466666666653 34433 55554 3788888763 6666766666555
Q ss_pred hhhCCCccCCCCCEEEeecccceeEEEEeccccccCCCCCCCCHHHhcCccccCceeeecChhHHHHHH----HHHcCCC
Q 016927 85 RRNDAGEIDPRGKIWAAPYRWGTMVIAYKKSKFRKHNLAPIEDWKDLWRPELAGRISMVNSPREVIGSV----LKYMGAS 160 (380)
Q Consensus 85 ~~~~~~~~d~~g~~Y~vP~~~~~~gi~Yn~d~~~~~g~~~p~sW~dL~~~~~~gki~~~~~~~~~~~~a----l~~~G~~ 160 (380)
+ ...|+..+.++|+|+++.- . .+.+|+||.++.+ +|++.|......+.. +...|.
T Consensus 71 -----------~--~~~~~~~~~~vl~~~~~~~-~----~~~~~~dL~~~~~--~i~~~dP~~s~~g~~~~~~l~~~g~- 129 (230)
T PF13531_consen 71 -----------G--SPAPLARSPLVLAVPKGNP-K----GIRSWADLAQPGL--RIAIPDPSTSPSGLAALQVLAAAGG- 129 (230)
T ss_dssp -----------G--GEEEEEEEEEEEEEETTST-T----STTCHHHHCSTT----EEEE-TTTTHHHHHHHHHHHHHTH-
T ss_pred -----------C--cccccccCceEEEeccCcc-c----ccCCHHHHhhccC--EEEecCcccChhhHHHHHHHHHccc-
Confidence 0 1356667779999999982 2 6889999999877 799987433222221 112221
Q ss_pred CCCCChhhhhccchHHHHHHHHHHhhhccccc--chhHHHHhHcCCEEEEEechhcHHHHHHcCCCcEEEccCCCccc-e
Q 016927 161 YNSNNIDLQVAGGKISVQQNLALLANQARLFD--STHYLKAFGIGDVWVAVGWSSDVLPAVKRMSNVAVVVPKSGASL-W 237 (380)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~L~~l~~~v~~~~--~~~~~~~~~~Gev~~~~~~s~~~~~~~~~~~~i~~~~P~eG~~~-~ 237 (380)
.+.+.++..++..+. ..+....+.+|++++++.|...+... ..+.++.++.|.++... .
T Consensus 130 -----------------~~~~~~l~~~~~~~~~~~~~~~~~v~~g~~d~~~~~~s~~~~~-~~~~~~~~v~~~~~~~~~~ 191 (230)
T PF13531_consen 130 -----------------QELLDALQKNIVQYVPSTSQVLSAVASGEADAGIVYESQAIFA-RQGDPLSYVYPPDGVNSPP 191 (230)
T ss_dssp -----------------CHHHHHHHHTEEEEESSHHHHHHHHHTTSSSEEEEEHHHHHHC-TSHTTEEEEE-STTTSSSE
T ss_pred -----------------HHHHHHHHHhCcccccchHHHHHHHHcCCCcceeeHHHHHHHh-hcCCCeEEEECCchhcCCC
Confidence 235556666665443 35777889999999999988776433 45568888877777664 4
Q ss_pred e-eeEEEeCCCCCcccccCCCCCCChHHHHHHHHHHhhHHhhchhhh
Q 016927 238 A-DLWAIPAASRLETKQIGGRVRGPSPLIHQWIEFCLQTARALPFKQ 283 (380)
Q Consensus 238 ~-d~~~I~k~s~~~~~~~~~~~~~~~~~A~~fi~fllspe~~~~~~~ 283 (380)
. ..+++.++++|++ +|..|++||+|++.|..+.+
T Consensus 192 ~~~~~~~~~~~~~~~------------~a~~f~~~L~s~~~q~~l~~ 226 (230)
T PF13531_consen 192 IDYPIAILKNAPHPE------------AARAFIDFLLSPEGQQILAK 226 (230)
T ss_dssp EEEEEEEBTTCTTHH------------HHHHHHHHHTSHHHHHHHHH
T ss_pred EEEEEEEecCCCCHH------------HHHHHHHHHCCHHHHHHHHH
Confidence 3 4689999999998 99999999999999998875
No 28
>PRK10677 modA molybdate transporter periplasmic protein; Provisional
Probab=99.06 E-value=7.8e-09 Score=97.36 Aligned_cols=144 Identities=17% Similarity=0.226 Sum_probs=91.7
Q ss_pred ecccceeEEEEecccc-ccCCCCCCCCHHHhcCccccCceeeecChhHHHHH----HHHHcCCCCCCCChhhhhccchHH
Q 016927 102 PYRWGTMVIAYKKSKF-RKHNLAPIEDWKDLWRPELAGRISMVNSPREVIGS----VLKYMGASYNSNNIDLQVAGGKIS 176 (380)
Q Consensus 102 P~~~~~~gi~Yn~d~~-~~~g~~~p~sW~dL~~~~~~gki~~~~~~~~~~~~----al~~~G~~~~~~~~~~~~~~~~~~ 176 (380)
++..+..+|+|+++.- +...+.+|++|+||++ .++|.+.|......+. ++...|. ++.
T Consensus 103 ~~a~n~lvl~~~~~~~~~~i~~~~~~~~~dLl~---~~~iai~dP~~~p~G~~a~~~l~~~g~--------------~~~ 165 (257)
T PRK10677 103 TLLGNSLVVVAPKASEQKDFTIDKKTDWKSLLN---GGRLAVGDPDHVPAGIYAKEALQKLGA--------------WDT 165 (257)
T ss_pred eeecCEEEEEEECCCccccccccCccCHHHhcC---CCeEEEcCCCCChHHHHHHHHHHHcCC--------------HHH
Confidence 3566788999999742 2222346789999976 3688887632222221 2223332 111
Q ss_pred HHHHHHHHhhhcccccchhHHHHhHcCCEEEEEechhcHHHHHHcCCCcEEEccCCCccceeeeEEEeCCCCCcccccCC
Q 016927 177 VQQNLALLANQARLFDSTHYLKAFGIGDVWVAVGWSSDVLPAVKRMSNVAVVVPKSGASLWADLWAIPAASRLETKQIGG 256 (380)
Q Consensus 177 ~~~~L~~l~~~v~~~~~~~~~~~~~~Gev~~~~~~s~~~~~~~~~~~~i~~~~P~eG~~~~~d~~~I~k~s~~~~~~~~~ 256 (380)
..+. +. + .-.-.+..+.+.+|++++++.|..++. ..++.++..++|+++...-...++|.++++| +
T Consensus 166 l~~k---~~-~--~~~v~~~~~~v~~G~ad~gi~~~s~a~--~~~~~~~~~~~P~e~~~~i~~~~avlk~~~~-~----- 231 (257)
T PRK10677 166 LSPK---LA-R--AEDVRGALALVERNEAPLGIVYGSDAV--ASKKVKVVGTFPEDSHKPVEYPMAIVKGHNN-A----- 231 (257)
T ss_pred HHhh---hc-c--cccHHHHHHHHHcCCCCEEEEEeeeee--ccCCCeEEEECCcccCCcceeeEEEEcCCCC-H-----
Confidence 1111 11 0 001134667889999999999877653 2233455556898876555567889999876 4
Q ss_pred CCCCChHHHHHHHHHHhhHHhhchhhh
Q 016927 257 RVRGPSPLIHQWIEFCLQTARALPFKQ 283 (380)
Q Consensus 257 ~~~~~~~~A~~fi~fllspe~~~~~~~ 283 (380)
+|.+|++|++|+|.|..+.+
T Consensus 232 -------~Ak~Fi~fl~S~eaq~i~~~ 251 (257)
T PRK10677 232 -------TVKAFYDYLKGPQAAAIFKR 251 (257)
T ss_pred -------HHHHHHHHHcCHHHHHHHHH
Confidence 79999999999999988864
No 29
>PF02030 Lipoprotein_8: Hypothetical lipoprotein (MG045 family)
Probab=99.04 E-value=2.2e-09 Score=106.83 Aligned_cols=240 Identities=16% Similarity=0.127 Sum_probs=137.4
Q ss_pred EEEEEcccHHHHHHhcccchhHhhcCCCCCCCccEEEeCcHHHHHHHHcCcccccccCCCcc--------ccCCCC---h
Q 016927 10 FQMNLCASIDGIVNNLSVPFNKVKAKSAPYMAADLVSVGDSWLSFAIKKRLIEPIAGAEDQD--------WFKCLS---H 78 (380)
Q Consensus 10 v~~~~~gs~~~~~~~~~~~~~kl~ag~~~~~~~Dvv~~~~~~~~~~~~~gll~pld~~~~~~--------~~~~~~---~ 78 (380)
|+..+.++.+++.++ ++.+ .|||.++++..+.+|+++|+|+|||.++.-- .+.+-. .
T Consensus 51 ~~y~tf~sne~l~~k-------f~~~-----~YDvaVpS~y~vakl~~~~~l~kIDwsKfnl~~~~~~~~~i~~~~~~~~ 118 (493)
T PF02030_consen 51 VKYRTFDSNEILYNK-------FKTG-----TYDVAVPSDYMVAKLASENLLQKIDWSKFNLKKENNSTNTINNANDAKK 118 (493)
T ss_pred eeEEEeCchHHHHHH-------hccC-----ceeEEeccHHHHHHHHHcCCcccccHHHhccccccCccccccCchhHHH
Confidence 444455555555544 4432 4999999999999999999999999764110 000101 1
Q ss_pred hhHHHHhhhCCCccCC-CC--CEEEeecccceeEEEEeccccccCCCCCCCCHHHhcCcc-------ccCceeeecChhH
Q 016927 79 KWKVYLRRNDAGEIDP-RG--KIWAAPYRWGTMVIAYKKSKFRKHNLAPIEDWKDLWRPE-------LAGRISMVNSPRE 148 (380)
Q Consensus 79 ~~~~~~~~~~~~~~d~-~g--~~Y~vP~~~~~~gi~Yn~d~~~~~g~~~p~sW~dL~~~~-------~~gki~~~~~~~~ 148 (380)
++............|. .+ -.|||||.|+-.+|+||.+.++... ..--+|.+++... -..|+++.|+++.
T Consensus 119 lFt~~v~~i~~~~~d~k~~~LldY~IPYF~QDLvfaY~~eki~~L~-~~~v~w~~l~k~i~~~~~rfn~~Kl~~IDd~rt 197 (493)
T PF02030_consen 119 LFTDEVFEILASYTDLKNNSLLDYGIPYFWQDLVFAYNGEKIKNLK-NEDVSWSDLIKEINNHKDRFNNNKLAIIDDART 197 (493)
T ss_pred hhhHHHHHHHHHhhhcccchhhhhcccceeeeeEEEEcccccchhh-hcCCcHHHHHHHHhhCcccccccceEEeccHHH
Confidence 1110000000000110 01 2499999999999999998887521 2345899987531 2347899999988
Q ss_pred HHHHHHHHc---CCCCCCCChh-hh--h-ccchH---HHHHHHHHHhhhcccccchhHHHHhHcCCEEEEEechhcHHHH
Q 016927 149 VIGSVLKYM---GASYNSNNID-LQ--V-AGGKI---SVQQNLALLANQARLFDSTHYLKAFGIGDVWVAVGWSSDVLPA 218 (380)
Q Consensus 149 ~~~~al~~~---G~~~~~~~~~-~~--~-~~~~~---~~~~~L~~l~~~v~~~~~~~~~~~~~~Gev~~~~~~s~~~~~~ 218 (380)
++.++-.+. ..++....+. .+ . ..... .+......+.....--++..+...|++|+.+.+++|+|++..+
T Consensus 198 i~sI~k~~~~~~~nd~~~v~~~~~q~~~~~~~~~~~s~i~~~~~~l~~lf~N~dS~~lln~la~~~~~~aimYNGDalyA 277 (493)
T PF02030_consen 198 IYSISKLIKTENNNDPKNVNPKGSQTNYFKNNYESVSYIGLVRNNLSTLFLNSDSNDLLNNLANGQFDGAIMYNGDALYA 277 (493)
T ss_pred HHHHHHHHhhccCCCccccccccccccccccchhhhhhhhhhhcchhhhhcCCChHHHHHHHhccccceEEEEccHHHHH
Confidence 776654433 2221111110 00 0 00000 1111111111101112456889999999999999999999877
Q ss_pred HHcCC--------------CcEEEccCCCccceeeeEEEeCCCCCcccccCCCCCCChHHHHHHHHHHhh
Q 016927 219 VKRMS--------------NVAVVVPKSGASLWADLWAIPAASRLETKQIGGRVRGPSPLIHQWIEFCLQ 274 (380)
Q Consensus 219 ~~~~~--------------~i~~~~P~eG~~~~~d~~~I~k~s~~~~~~~~~~~~~~~~~A~~fi~flls 274 (380)
...|. ++..+-|+. +....|+++++|.+++.+ +.||+||++++-
T Consensus 278 ~~gGd~~~E~~~~~~~~~~nf~~vr~~~-tl~~LD~iVinK~~~e~e-----------d~AYe~I~~l~~ 335 (493)
T PF02030_consen 278 ANGGDYFEEKDENKLPDSNNFHIVRPKN-TLSLLDFIVINKISSENE-----------DKAYEFINKLAF 335 (493)
T ss_pred hcCCCcccccccccCCCCCceeeeccCC-CceehhhhhhcccCHHHH-----------HHHHHHHHHHHH
Confidence 43321 344455543 666778888887554433 399999999874
No 30
>COG1613 Sbp ABC-type sulfate transport system, periplasmic component [Inorganic ion transport and metabolism]
Probab=98.93 E-value=6.7e-08 Score=90.17 Aligned_cols=221 Identities=17% Similarity=0.234 Sum_probs=134.3
Q ss_pred CCCceEEEEEEcccHHHHHHhcccchhHhhcCCCCCCCccEEEeCc-HHHHHHHHcC-cccccccCCCccccCCCChhhH
Q 016927 4 QGKRLKFQMNLCASIDGIVNNLSVPFNKVKAKSAPYMAADLVSVGD-SWLSFAIKKR-LIEPIAGAEDQDWFKCLSHKWK 81 (380)
Q Consensus 4 ~~~~v~v~~~~~gs~~~~~~~~~~~~~kl~ag~~~~~~~Dvv~~~~-~~~~~~~~~g-ll~pld~~~~~~~~~~~~~~~~ 81 (380)
.|..|+|+-++|||-...+.- ..+- ..|||.+.- ..+..+.+.| ++.+ | +..-
T Consensus 67 tG~~Vti~qShGGSgkQaRsV---------iDGl---~ADVVtlal~~Did~i~~~g~li~~-d----------W~~r-- 121 (348)
T COG1613 67 TGETVTIQQSHGGSGKQARSV---------IDGL---EADVVTLALAYDIDAIAKAGGLIDK-D----------WQKR-- 121 (348)
T ss_pred cCCceEEEecCCCcchhhHhh---------ccCc---ccceeeeehhhhHHHHHHhcCCCCc-c----------hHhh--
Confidence 355677777777766655433 1222 589999985 4677777766 4433 2 1110
Q ss_pred HHHhhhCCCccCCCCCEEEeecccceeEEEEeccccccCCCCCCCCHHHhcCccccCceeeec-----ChhHHHHHHHHH
Q 016927 82 VYLRRNDAGEIDPRGKIWAAPYRWGTMVIAYKKSKFRKHNLAPIEDWKDLWRPELAGRISMVN-----SPREVIGSVLKY 156 (380)
Q Consensus 82 ~~~~~~~~~~~d~~g~~Y~vP~~~~~~gi~Yn~d~~~~~g~~~p~sW~dL~~~~~~gki~~~~-----~~~~~~~~al~~ 156 (380)
. |+| ++||. ++++|+.|+.-=+ .+++|+||..+..+ |..++ ..++.+-.+..+
T Consensus 122 ----------l-p~n---s~Pyt-StivFlVRkGNPK-----~I~DW~DL~k~gV~--VItpNPKTSGgARWN~Laawa~ 179 (348)
T COG1613 122 ----------L-PNN---SAPYT-STIVFLVRKGNPK-----QIRDWDDLVKPGVQ--VITPNPKTSGGARWNYLAAWAY 179 (348)
T ss_pred ----------C-cCC---CCCcc-ceEEEEEecCCcc-----ccCchHHhccCCcE--EEcCCCCCCcchhHHHHHHHHH
Confidence 1 223 57886 7889999987643 47899999986432 33333 234554333222
Q ss_pred cCCCCCCCChhhhhccchHHHHHHHHHHhhhcccccch--hHHHHhHc-CCEEEEEechhcHHHHH--HcCCCcEEEccC
Q 016927 157 MGASYNSNNIDLQVAGGKISVQQNLALLANQARLFDST--HYLKAFGI-GDVWVAVGWSSDVLPAV--KRMSNVAVVVPK 231 (380)
Q Consensus 157 ~G~~~~~~~~~~~~~~~~~~~~~~L~~l~~~v~~~~~~--~~~~~~~~-Gev~~~~~~s~~~~~~~--~~~~~i~~~~P~ 231 (380)
...-+..|. .++.++..+|-.|+...++. ....-|.+ |--++.+.|..+++.+. ..+.++++++|.
T Consensus 180 -a~~~~~gde--------aka~~fV~~L~~nvpvld~gaRgAT~tF~qrgiGDVLi~wENEA~la~~e~g~~~feiV~Ps 250 (348)
T COG1613 180 -ALKTNGGDE--------AKAKDFVGKLYKNVPVLDTGARGATTTFVQRGIGDVLIAWENEALLALNELGGDKFEIVTPS 250 (348)
T ss_pred -HHhcCCCCH--------HHHHHHHHHHHhcCccccCCcchhhHHHHhcCcccEEEEechHHHHHHHHhCCCCccEECCc
Confidence 111111122 35788889998998887643 34445554 77888899999887663 345689999996
Q ss_pred CCccceeeeEEEeCCCCCcccccCCCCCCChHHHHHHHHHHhhHHhhchhhhhhcCCCCCC
Q 016927 232 SGASLWADLWAIPAASRLETKQIGGRVRGPSPLIHQWIEFCLQTARALPFKQEVIPGASPS 292 (380)
Q Consensus 232 eG~~~~~d~~~I~k~s~~~~~~~~~~~~~~~~~A~~fi~fllspe~~~~~~~~~~~~~~p~ 292 (380)
---.+-....+|-++. ++ +|-.+.|..|++|+.||+.|..+++. |..|.
T Consensus 251 ~si~aEpPVAVVd~~v-dk--------kgtr~vAeAyl~yLys~~gQ~i~Ak~---~yRP~ 299 (348)
T COG1613 251 VSILAEPPVAVVDKNV-DK--------KGTRKVAEAYLKYLYSPEGQEIAAKH---YYRPR 299 (348)
T ss_pred eeeeecCCeEEEeeec-cc--------cccHHHHHHHHHHhcChHHHHHHHHh---CCCCC
Confidence 2111111122333333 22 24455999999999999999999875 34664
No 31
>PRK03537 molybdate ABC transporter periplasmic molybdate-binding protein; Provisional
Probab=98.57 E-value=1.2e-06 Score=78.62 Aligned_cols=158 Identities=11% Similarity=0.089 Sum_probs=96.4
Q ss_pred eecccceeEEEEeccccccCCCCCCCCHHH-hcCccccCceeeecChhHHH----HHHHHHcCCCCCCCChhhhhccchH
Q 016927 101 APYRWGTMVIAYKKSKFRKHNLAPIEDWKD-LWRPELAGRISMVNSPREVI----GSVLKYMGASYNSNNIDLQVAGGKI 175 (380)
Q Consensus 101 vP~~~~~~gi~Yn~d~~~~~g~~~p~sW~d-L~~~~~~gki~~~~~~~~~~----~~al~~~G~~~~~~~~~~~~~~~~~ 175 (380)
.+|..+..+|+|+++.-. .+.+|.| |.++.. +|++.+....-+ ..+|...|.... .- ++
T Consensus 17 ~~~a~n~lvl~~~~~~~~-----~~~~~~d~L~~~~~--~iai~~P~~~P~G~~a~~~l~~~~~~~~---~~------~~ 80 (188)
T PRK03537 17 VPFARNRLCAIARADVML-----TSDNLLDLLLDPDI--RLGTSTPGADPSGDYAWQLFDRAEALHA---GA------GE 80 (188)
T ss_pred eeeeeceEEEEEcCCCCC-----CccCHHHHhcCCCc--EEEcCCCCCCcchHHHHHHHHHHHhhcc---Cc------ch
Confidence 578889999999987532 5678977 667764 688765322111 122333332100 00 11
Q ss_pred HHHHHHHHHh--hhcccccc-hhHHH-HhHcCCEEEEEechhcHHHHHHcCCCcEE-EccCCCccceeeeEEEeCCCCCc
Q 016927 176 SVQQNLALLA--NQARLFDS-THYLK-AFGIGDVWVAVGWSSDVLPAVKRMSNVAV-VVPKSGASLWADLWAIPAASRLE 250 (380)
Q Consensus 176 ~~~~~L~~l~--~~v~~~~~-~~~~~-~~~~Gev~~~~~~s~~~~~~~~~~~~i~~-~~P~eG~~~~~d~~~I~k~s~~~ 250 (380)
.+.+.+..+- .++..+.. .+... .+.+|++++++.|..++......+.++.+ .+|.+....-.-.+++.++++
T Consensus 81 ~l~~~~~~~v~~~~~~~~~~~~~~~~~~v~~G~adag~vy~s~~~~~~~~~~~~~~i~iP~~~~~~i~y~iav~k~~~-- 158 (188)
T PRK03537 81 ALRTKALQLVGGPNSAPIPAGRNAAEWLIENKQADIFIGYASNAPLAQREVPSLQVVDLPEPLAVGAEYGLAILKDAS-- 158 (188)
T ss_pred HHHHHHHHHhCCCCCCcCCCcchHHHHHHHCCCCCEEEEEecHHHHHhccCCCCeEEeCCCCcceeeeeeEEEecCCh--
Confidence 2222222211 23322221 23333 77899999999998876654333345665 479887665556788988764
Q ss_pred ccccCCCCCCChHHHHHHHHHHhhHHhhchhhhhhcCCCC
Q 016927 251 TKQIGGRVRGPSPLIHQWIEFCLQTARALPFKQEVIPGAS 290 (380)
Q Consensus 251 ~~~~~~~~~~~~~~A~~fi~fllspe~~~~~~~~~~~~~~ 290 (380)
+ +|.+|++|++|+|.|..|.+ .||..
T Consensus 159 ~------------~A~~F~~fl~s~eaq~i~~~--~Gf~~ 184 (188)
T PRK03537 159 P------------QAKRLADFLLSPKGQAILAQ--YGFSP 184 (188)
T ss_pred H------------HHHHHHHHHhCHHHHHHHHH--cCCCC
Confidence 5 89999999999999999986 35543
No 32
>PRK04168 molybdate ABC transporter periplasmic substrate-binding protein; Provisional
Probab=98.54 E-value=6.2e-06 Score=80.60 Aligned_cols=92 Identities=15% Similarity=0.196 Sum_probs=64.0
Q ss_pred hhHHHHhHcCCEEEEEechhcHHHHHHcCCCcEE-EccCC--------------------------CccceeeeEEEeCC
Q 016927 194 THYLKAFGIGDVWVAVGWSSDVLPAVKRMSNVAV-VVPKS--------------------------GASLWADLWAIPAA 246 (380)
Q Consensus 194 ~~~~~~~~~Gev~~~~~~s~~~~~~~~~~~~i~~-~~P~e--------------------------G~~~~~d~~~I~k~ 246 (380)
.+....+.+|++++++.|..++... ++.+ .+|.+ ...-....++|+++
T Consensus 212 ~~~~~~v~~G~aDagivy~S~a~~~-----~~~~i~lP~~~n~~~~~~~~~y~~~~~~~~~~~~~~~~~pi~y~~ai~~~ 286 (334)
T PRK04168 212 VELLSLLETGNMDYAFIYKSVAVQH-----NLKYIELPDEINLGNYKYADFYKKVSVTVTGTGKTITAKPIVYGITVPKN 286 (334)
T ss_pred hhhHHHHhcCCccEEEEEeeehhhC-----CCCeeECchhhcCCChhhhhhhhEEEEEecCCCccccCceeeeeeeeecC
Confidence 3677889999999999998876531 2222 24432 11123456899999
Q ss_pred CCCcccccCCCCCCChHHHHHHHHHHhhHHhhchhhhhhcCCCC--CCccccccccCChhHhc
Q 016927 247 SRLETKQIGGRVRGPSPLIHQWIEFCLQTARALPFKQEVIPGAS--PSALETTLVKLPEELLK 307 (380)
Q Consensus 247 s~~~~~~~~~~~~~~~~~A~~fi~fllspe~~~~~~~~~~~~~~--p~~~~~a~~~l~~e~~~ 307 (380)
++|++ +|++|++|+++++.|..+.+ .|+.. |. .....+|++++.
T Consensus 287 s~n~e------------~A~~Fi~fl~S~e~q~il~~--~Gf~~~~P~---~~~~~~p~~l~~ 332 (334)
T PRK04168 287 APNRE------------AAIEFLKYLLSEPGGEVLEN--NGQPPIVPA---IAFGNVPEELKD 332 (334)
T ss_pred CCCHH------------HHHHHHHHHcCHHHHHHHHH--cCCCCCCCc---cccCCCCHHHhh
Confidence 99998 99999999999999999876 34433 32 234557777653
No 33
>COG0725 ModA ABC-type molybdate transport system, periplasmic component [Inorganic ion transport and metabolism]
Probab=98.28 E-value=3.7e-05 Score=72.36 Aligned_cols=145 Identities=16% Similarity=0.167 Sum_probs=91.2
Q ss_pred EEeecccceeEEEEeccccccCCCCCCCCHHHhcCccccCceeeecChhH---HH-HHHHHHcCCCCCCCChhhhhccch
Q 016927 99 WAAPYRWGTMVIAYKKSKFRKHNLAPIEDWKDLWRPELAGRISMVNSPRE---VI-GSVLKYMGASYNSNNIDLQVAGGK 174 (380)
Q Consensus 99 Y~vP~~~~~~gi~Yn~d~~~~~g~~~p~sW~dL~~~~~~gki~~~~~~~~---~~-~~al~~~G~~~~~~~~~~~~~~~~ 174 (380)
+-+++..+.++|++.++--. ...+|.++.+.. ..++++-|.... .. -.+|...|.-....+
T Consensus 103 ~~~~fa~n~lvl~~~~~~~~-----~~~~~~~l~~~~-~~~lai~~p~~~P~G~ya~~~l~~~g~~~~~~~--------- 167 (258)
T COG0725 103 SRIVFAGNRLVLAVPKGSKK-----KIESLEDLLERP-DVRLAIGDPKTVPAGKYAKEALELLGLWYTLKD--------- 167 (258)
T ss_pred ceEEeeCCeEEEEEeCCCcc-----CcccHHHHhcCc-CcEEEecCCCCCCchHHHHHHHHHhchhhhccc---------
Confidence 45788889999999876433 345599998853 245666552211 11 112233333211000
Q ss_pred HHHHHHHHHHhhhcccccchhHHHHhHcCCEEEEEechhcHHHHHHcCCCcEEEccCCCccceeeeEEEeCCCCCccccc
Q 016927 175 ISVQQNLALLANQARLFDSTHYLKAFGIGDVWVAVGWSSDVLPAVKRMSNVAVVVPKSGASLWADLWAIPAASRLETKQI 254 (380)
Q Consensus 175 ~~~~~~L~~l~~~v~~~~~~~~~~~~~~Gev~~~~~~s~~~~~~~~~~~~i~~~~P~eG~~~~~d~~~I~k~s~~~~~~~ 254 (380)
+.+..-+-.+....+.+|+++.++.|..++.... ...+-..+|.+...--...++|+++++|++
T Consensus 168 -----------k~v~~~~v~~~l~~V~~G~ad~g~vy~sd~~~~~--~~~~~~~~~~~~~~Pi~y~iav~~~~~~~~--- 231 (258)
T COG0725 168 -----------KLVLATNVRQALAYVETGEADAGFVYVSDALLSK--KVKIVGVFPEDLHSPIVYPIAVLKNAKNPE--- 231 (258)
T ss_pred -----------cEEecCcHHHHHHHHHcCCCCeEEEEEEhhhccC--CceEEEEcccccCCCeEEEEEEEcCCCCHH---
Confidence 0011111125667888999999999988654432 234444677655443445799999999988
Q ss_pred CCCCCCChHHHHHHHHHHhhHHhhchhhh
Q 016927 255 GGRVRGPSPLIHQWIEFCLQTARALPFKQ 283 (380)
Q Consensus 255 ~~~~~~~~~~A~~fi~fllspe~~~~~~~ 283 (380)
.|.+|++|+.|++.+.-+.+
T Consensus 232 ---------~A~~f~~fl~s~~a~~il~~ 251 (258)
T COG0725 232 ---------LAKEFVDFLLSPEAQEILEK 251 (258)
T ss_pred ---------HHHHHHHHHhCHHHHHHHHH
Confidence 99999999999998888875
No 34
>COG4150 CysP ABC-type sulfate transport system, periplasmic component [Inorganic ion transport and metabolism]
Probab=97.95 E-value=1.9e-05 Score=71.86 Aligned_cols=211 Identities=18% Similarity=0.259 Sum_probs=124.2
Q ss_pred CCceEEEEEEcccHHHHHHhcccchhHhhcCCCCCCCccEEEeCcH-HHHHHHHcCcccccccCCCccccCCCChhhHHH
Q 016927 5 GKRLKFQMNLCASIDGIVNNLSVPFNKVKAKSAPYMAADLVSVGDS-WLSFAIKKRLIEPIAGAEDQDWFKCLSHKWKVY 83 (380)
Q Consensus 5 ~~~v~v~~~~~gs~~~~~~~~~~~~~kl~ag~~~~~~~Dvv~~~~~-~~~~~~~~gll~pld~~~~~~~~~~~~~~~~~~ 83 (380)
|.+|+|+-+..||...++.-+ .|- ..|||..+.. .+..+.+.|-|.|-|- +..+||
T Consensus 62 G~~lti~QSHAGsSkQAraIl--------qGL----~ADVVTfNQVtDVqiLhdkg~lipAdW---q~~lPn-------- 118 (341)
T COG4150 62 GDKLTIKQSHAGSSKQARAIL--------QGL----KADVVTFNQVTDVQILHDKGKLIPADW---QSRLPN-------- 118 (341)
T ss_pred CceeEEecccccchHHHHHHH--------hhc----ccceEEeecceeeeeehhcCCccchhh---hhhCCC--------
Confidence 455777777777776665441 232 3788888753 5666777777767652 112222
Q ss_pred HhhhCCCccCCCCCEEEeecccceeEEEEeccccccCCCCCCCCHHHhcCccccCceeeec-----ChhHHHHHHHHHcC
Q 016927 84 LRRNDAGEIDPRGKIWAAPYRWGTMVIAYKKSKFRKHNLAPIEDWKDLWRPELAGRISMVN-----SPREVIGSVLKYMG 158 (380)
Q Consensus 84 ~~~~~~~~~d~~g~~Y~vP~~~~~~gi~Yn~d~~~~~g~~~p~sW~dL~~~~~~gki~~~~-----~~~~~~~~al~~~G 158 (380)
+ +-|| ++++++..|+.--+ .++.|+||.....+ +.+++ +.+.++-.+..+..
T Consensus 119 ------------n---sSPf-YS~~aFLVR~GNPK-----~IkdW~DLvRdDVk--~iFPNPKTSGNaRYTYLAA~~~a~ 175 (341)
T COG4150 119 ------------N---SSPF-YSTMAFLVRKGNPK-----NIKDWDDLVRDDVK--LIFPNPKTSGNARYTYLAAWGAAD 175 (341)
T ss_pred ------------C---CCcc-ccchHHHhhcCCcc-----cCccHHHHhhhcce--EecCCCCCCCchhhhHHHHHHHHH
Confidence 1 2344 35667777765432 57899999975432 33332 23444433332221
Q ss_pred CCCCCCChhhhhccchHHHHHHHHHHhhhcccccch--hHHHHhH-cCCEEEEEechhcHHHHHHc--CCCcEEEccCC-
Q 016927 159 ASYNSNNIDLQVAGGKISVQQNLALLANQARLFDST--HYLKAFG-IGDVWVAVGWSSDVLPAVKR--MSNVAVVVPKS- 232 (380)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~L~~l~~~v~~~~~~--~~~~~~~-~Gev~~~~~~s~~~~~~~~~--~~~i~~~~P~e- 232 (380)
..+. .| -.+..+++.++-.|+..|+.. ....-|. .|--++.+++.+....++++ ..+.+.++|+-
T Consensus 176 ~af~-gD--------~~k~~ef~~k~~~Nv~VFDTGGRgATTtFveRglGDVLItFEsE~~~irkqyg~d~~evVvP~~s 246 (341)
T COG4150 176 EAFG-GD--------KAKTEEFMTKFLKNVEVFDTGGRGATTTFVERGLGDVLITFESEVNNIRKQYGADKFEVVVPKTS 246 (341)
T ss_pred Hhhc-Cc--------HHHHHHHHHHHhcCCceeccCCccccchhhhhccccEEEEeehhhccHHHHhCcccceEeccchh
Confidence 1111 11 246788999999999999742 2223333 34344555556666666554 34788899963
Q ss_pred ----CccceeeeEEEeCCCCCcccccCCCCCCChHHHHHHHHHHhhHHhhchhhhh
Q 016927 233 ----GASLWADLWAIPAASRLETKQIGGRVRGPSPLIHQWIEFCLQTARALPFKQE 284 (380)
Q Consensus 233 ----G~~~~~d~~~I~k~s~~~~~~~~~~~~~~~~~A~~fi~fllspe~~~~~~~~ 284 (380)
=...|+|-.+=- ||-.++|..+++|+.||+.|..+++.
T Consensus 247 iLAEFPVa~Vdkvv~k--------------~Gt~~~AkaYl~~LYsp~~Q~i~a~~ 288 (341)
T COG4150 247 ILAEFPVAWVDKVVDK--------------NGTEKAAKAYLNYLYSPQAQTIIAEF 288 (341)
T ss_pred hhhhcchhHHhhhhhh--------------cccHHHHHHHHHHhcCcHHHHHHHHh
Confidence 233454432221 23345999999999999999988863
No 35
>TIGR03730 tungstate_WtpA tungstate ABC transporter binding protein WtpA. Members of this protein family are tungstate (and, more weakly, molybdate) binding proteins of tungstate(/molybdate) ABC transporters, as first characterized in Pyrococcus furiosus. Model seed members and cutoffs, pending experimental evidence for more distant homologs, were chosen such that this model identifies select archaeal proteins, excluding weaker archaeal and all bacterial homologs. Note that this family is homologous to molybdate transporters, and that at least one other family of tungstate transporter binding protein, TupA, also exists.
Probab=97.41 E-value=0.0045 Score=58.79 Aligned_cols=66 Identities=15% Similarity=0.153 Sum_probs=42.8
Q ss_pred hhHHHHhHcCCEEEEEechhcHHHHH------------------HcCCCcEEEc--cC---CCccceeeeEEEeCCCCCc
Q 016927 194 THYLKAFGIGDVWVAVGWSSDVLPAV------------------KRMSNVAVVV--PK---SGASLWADLWAIPAASRLE 250 (380)
Q Consensus 194 ~~~~~~~~~Gev~~~~~~s~~~~~~~------------------~~~~~i~~~~--P~---eG~~~~~d~~~I~k~s~~~ 250 (380)
.+....+.+|++++++.|..++.... +....+.++. |. .|.. -.-..+|+++++|+
T Consensus 185 ~~~~~~v~sG~aD~g~vY~S~A~~~~~~~~~lP~~~n~~~~~~~~~y~~v~~~~~~~~~~~~~~p-i~y~~ai~~~~~~~ 263 (273)
T TIGR03730 185 VELLSLLESGEIDYAFIYKSVAVQHGLKYIELPDEINLGDYSYADFYKKVSVELGGGKKTITGKP-IVYGITVPKNAPNR 263 (273)
T ss_pred HhHHHHHHCCCCcEEEEEeeecccCCCceEECChhccCCChhhhcccceEEEEecCCCceEecCC-EEEEEeccCCCCCH
Confidence 46778899999999999988754210 0001222222 21 1111 12467899999999
Q ss_pred ccccCCCCCCChHHHHHHHHHH
Q 016927 251 TKQIGGRVRGPSPLIHQWIEFC 272 (380)
Q Consensus 251 ~~~~~~~~~~~~~~A~~fi~fl 272 (380)
+ +|.+|++|+
T Consensus 264 ~------------~a~~F~~fl 273 (273)
T TIGR03730 264 E------------EAIEFLKFL 273 (273)
T ss_pred H------------HHHHHHhhC
Confidence 8 999999995
No 36
>COG4588 AcfC Accessory colonization factor AcfC, contains ABC-type periplasmic domain [General function prediction only]
Probab=92.18 E-value=0.47 Score=42.63 Aligned_cols=89 Identities=16% Similarity=0.157 Sum_probs=63.5
Q ss_pred HHHHHHHhhhccccc--chhHHHHhHc-CCEEEEEechhcHHHHHHcCCCcEEEccCC-CccceeeeEEEeCCCCCcccc
Q 016927 178 QQNLALLANQARLFD--STHYLKAFGI-GDVWVAVGWSSDVLPAVKRMSNVAVVVPKS-GASLWADLWAIPAASRLETKQ 253 (380)
Q Consensus 178 ~~~L~~l~~~v~~~~--~~~~~~~~~~-Gev~~~~~~s~~~~~~~~~~~~i~~~~P~e-G~~~~~d~~~I~k~s~~~~~~ 253 (380)
.+.+..++.|+..|. +....++|.+ -+++.-++|..- ...+|+++-+++.+ -..+|-+.=++++.-.++
T Consensus 155 ie~v~afR~NI~~fapnSgaArkaf~~~~~aDawItW~dW----a~snpdig~~v~~~~d~vIyRd~nv~~~~~a~~--- 227 (252)
T COG4588 155 IETVAAFRKNIVAFAPNSGAARKAFENQPDADAWITWADW----AKSNPDIGDAVEIEKDYVIYRDFNVALAKDANK--- 227 (252)
T ss_pred HHHHHHHHhceEEEccCCchHHHHHhcCCCCceEEEecch----hhhCCchhceeecccceEEeeecceeecCCCCH---
Confidence 466777889988884 4567788888 457777888642 23566777666543 356677665555555666
Q ss_pred cCCCCCCChHHHHHHHHHHhhHHhhchhhh
Q 016927 254 IGGRVRGPSPLIHQWIEFCLQTARALPFKQ 283 (380)
Q Consensus 254 ~~~~~~~~~~~A~~fi~fllspe~~~~~~~ 283 (380)
.|.+|++|+.|.|.|..|.+
T Consensus 228 ----------ea~~F~dyl~S~EAq~ifkk 247 (252)
T COG4588 228 ----------EARDFADYLQSDEAQKIFKK 247 (252)
T ss_pred ----------HHHHHHHHHhhHHHHHHHHh
Confidence 59999999999999988875
No 37
>TIGR01729 taurine_ABC_bnd taurine ABC transporter, periplasmic binding protein. This model identifies a cluster of ABC transporter periplasmic substrate binding proteins, apparently specific for taurine. Transport systems for taurine (NH2-CH2-CH2-SO3H), sulfonates, and sulfate esters import sulfur when sulfate levels are low. The most closely related proteins outside this family are putative aliphatic sulfonate binding proteins (TIGR01728).
Probab=69.28 E-value=1e+02 Score=29.02 Aligned_cols=70 Identities=16% Similarity=0.234 Sum_probs=41.6
Q ss_pred chhHHHHhHcCCEEEEEechhcHHHHHHcCCCcEEE--ccCCCccceeeeEEEeCC--CCCcccccCCCCCCChHHHHHH
Q 016927 193 STHYLKAFGIGDVWVAVGWSSDVLPAVKRMSNVAVV--VPKSGASLWADLWAIPAA--SRLETKQIGGRVRGPSPLIHQW 268 (380)
Q Consensus 193 ~~~~~~~~~~Gev~~~~~~s~~~~~~~~~~~~i~~~--~P~eG~~~~~d~~~I~k~--s~~~~~~~~~~~~~~~~~A~~f 268 (380)
..+...+|.+|+++++..|......+...+..+... ++.-|.. -.+.+++... .+|++ .+.+|
T Consensus 136 ~~~~~~al~~G~vDa~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~p~------------~~~~~ 202 (300)
T TIGR01729 136 PPQIVAAWQRGDIDAAYVWPPALSELLKSGKVISDSEQVGAWGAP-TFDGWVVRKDFAEKNPE------------FVAAF 202 (300)
T ss_pred cHHHHHHHHcCCcCEEEEecHHHHHHHhcCcEEecchhccccCCC-ceeEEEECHHHHHHCHH------------HHHHH
Confidence 356778999999999999988776666555221110 1100111 1234444433 23776 89999
Q ss_pred HHHHhhH
Q 016927 269 IEFCLQT 275 (380)
Q Consensus 269 i~fllsp 275 (380)
+.-+...
T Consensus 203 ~~a~~~a 209 (300)
T TIGR01729 203 TKVLADA 209 (300)
T ss_pred HHHHHHH
Confidence 8877653
No 38
>PF12727 PBP_like: PBP superfamily domain; InterPro: IPR024370 This entry represents members of the periplasmic binding domain superfamily []. It is often associated with a helix-turn-helix domain.
Probab=62.63 E-value=76 Score=28.31 Aligned_cols=124 Identities=13% Similarity=0.127 Sum_probs=71.7
Q ss_pred EEeecccceeEEEEeccccccCCCCCCCCHHHhcCccccCceeeecC-----hhHHHHHHHHHcCCCCCCCChhhhhccc
Q 016927 99 WAAPYRWGTMVIAYKKSKFRKHNLAPIEDWKDLWRPELAGRISMVNS-----PREVIGSVLKYMGASYNSNNIDLQVAGG 173 (380)
Q Consensus 99 Y~vP~~~~~~gi~Yn~d~~~~~g~~~p~sW~dL~~~~~~gki~~~~~-----~~~~~~~al~~~G~~~~~~~~~~~~~~~ 173 (380)
--|+...-..|+++++..=. ..++|+||.++. +.+.+. .+..+...+...|.+...
T Consensus 62 v~v~~~~r~~Gl~v~~~np~-----~i~~~~dL~~~~----~r~vnR~~GSGtR~l~d~~l~~~gi~~~~---------- 122 (193)
T PF12727_consen 62 VLVRLARREQGLIVRPGNPK-----GITSLEDLADPG----LRFVNRQPGSGTRILFDQLLAEEGIDPED---------- 122 (193)
T ss_pred EEEeeeEEeeeEEEeCCCCc-----cCCCHHHhccCC----cEEEECCCCCHHHHHHHHHHHHcCCChhh----------
Confidence 44667777789999988532 479999996643 333332 233444444444443211
Q ss_pred hHHHHHHHHHHhhhccc-ccchhHHHHhHcCCEEEEEechhcHHHHHHcCCCcEEE-ccCCCccceeeeEEEeCCCCCcc
Q 016927 174 KISVQQNLALLANQARL-FDSTHYLKAFGIGDVWVAVGWSSDVLPAVKRMSNVAVV-VPKSGASLWADLWAIPAASRLET 251 (380)
Q Consensus 174 ~~~~~~~L~~l~~~v~~-~~~~~~~~~~~~Gev~~~~~~s~~~~~~~~~~~~i~~~-~P~eG~~~~~d~~~I~k~s~~~~ 251 (380)
+..+... .+..+....++.|+++++++....+. +...+.|+ +..|- -.++|++..-..+
T Consensus 123 ----------i~gy~~~~~th~~vA~aVa~G~AD~G~g~~~~A~----~~~gL~Fvpl~~E~-----~dlv~~~~~~~~~ 183 (193)
T PF12727_consen 123 ----------IPGYAQEANTHLAVAAAVASGKADAGIGIRAAAE----EFYGLDFVPLAEER-----YDLVIRREDLEDP 183 (193)
T ss_pred ----------CCCccccccChHHHHHHHHcCCCCEEeehHHHHH----hhcCCCcEEccccc-----eEEEEEhhHcCCH
Confidence 1111111 12346678899999999997532221 22255553 22221 1578888887666
Q ss_pred cccCCCCCCChHHHHHHHHHH
Q 016927 252 KQIGGRVRGPSPLIHQWIEFC 272 (380)
Q Consensus 252 ~~~~~~~~~~~~~A~~fi~fl 272 (380)
...+||+|+
T Consensus 184 ------------~vq~ll~~l 192 (193)
T PF12727_consen 184 ------------AVQALLDFL 192 (193)
T ss_pred ------------HHHHHHHHh
Confidence 899999987
No 39
>PRK11063 metQ DL-methionine transporter substrate-binding subunit; Provisional
Probab=61.08 E-value=30 Score=32.73 Aligned_cols=79 Identities=8% Similarity=0.034 Sum_probs=55.8
Q ss_pred cchhHHHHhHcCCEEEEEechhcHHHHHHcCCCcEEEc-cCCCccceeeeEEEeCCCCCcccccCCCCCCChHHHHHHHH
Q 016927 192 DSTHYLKAFGIGDVWVAVGWSSDVLPAVKRMSNVAVVV-PKSGASLWADLWAIPAASRLETKQIGGRVRGPSPLIHQWIE 270 (380)
Q Consensus 192 ~~~~~~~~~~~Gev~~~~~~s~~~~~~~~~~~~i~~~~-P~eG~~~~~d~~~I~k~s~~~~~~~~~~~~~~~~~A~~fi~ 270 (380)
...+....|.+|+++.++.|...+..+..+..+-..++ +.+ .-+.+.+++.+...|++ .+.++++
T Consensus 183 ~~~~~~~al~~g~vDaa~i~~~~a~~a~~~~~~~~l~~e~~~--~~~~~~~~v~~~~~~~~------------~~~~l~~ 248 (271)
T PRK11063 183 EAPQLPRSLDDAQIALAVINTTYASQIGLTPAKDGIFVEDKD--SPYVNLIVAREDNKDAE------------NVKKFVQ 248 (271)
T ss_pred cHHHHHHhcccccccEEEEChHHHHHcCCCCCCCeeEECCCC--CCeEEEEEECCcccCCH------------HHHHHHH
Confidence 34677889999999999999877665432221111222 222 23456778887777776 9999999
Q ss_pred HHhhHHhhchhhhh
Q 016927 271 FCLQTARALPFKQE 284 (380)
Q Consensus 271 fllspe~~~~~~~~ 284 (380)
-+.|+++...+-+.
T Consensus 249 a~~s~~v~~~i~~~ 262 (271)
T PRK11063 249 AYQSDEVYEAANKV 262 (271)
T ss_pred HHcCHHHHHHHHHH
Confidence 99999999888665
No 40
>TIGR00363 lipoprotein, YaeC family. This family of putative lipoproteins contains a consensus site for lipoprotein signal sequence cleavage. Included in this family is the E. coli hypothetical protein yaeC. About half of the proteins between the noise and trusted cutoffs contain the consensus lipoprotein signature and may belong to this family.
Probab=57.39 E-value=36 Score=31.96 Aligned_cols=81 Identities=9% Similarity=0.021 Sum_probs=53.8
Q ss_pred cchhHHHHhHcCCEEEEEechhcHHHHHHcCCCcEEEccCCCccceeeeEEEeCCCCCcccccCCCCCCChHHHHHHHHH
Q 016927 192 DSTHYLKAFGIGDVWVAVGWSSDVLPAVKRMSNVAVVVPKSGASLWADLWAIPAASRLETKQIGGRVRGPSPLIHQWIEF 271 (380)
Q Consensus 192 ~~~~~~~~~~~Gev~~~~~~s~~~~~~~~~~~~i~~~~P~eG~~~~~d~~~I~k~s~~~~~~~~~~~~~~~~~A~~fi~f 271 (380)
...+....|.+|++++++.|...+..+.-.-.+=......... -+.+.+++...-++.+ ...+|++-
T Consensus 170 ~~~~~~~al~~g~vDaa~v~~~~~~~agl~~~~~~i~~e~~~~-~~~n~l~~r~~~~~~~------------~~~~lv~~ 236 (258)
T TIGR00363 170 ETSQLPRALDDPKVDLAVINTTYAGQVGLNPQDDGVFVEDKDS-PYVNIIVSREDNKDAE------------NVKDFIQS 236 (258)
T ss_pred CHHHHHHHhhcccccEEEEChHHHHHcCCCcCcCceeecCCCC-CeeEEEEEcCCccCCH------------HHHHHHHH
Confidence 4457778999999999999988766552221111122211111 2346677777666665 89999999
Q ss_pred HhhHHhhchhhhhh
Q 016927 272 CLQTARALPFKQEV 285 (380)
Q Consensus 272 llspe~~~~~~~~~ 285 (380)
+.|++++..+.+.+
T Consensus 237 ~~s~~v~~~i~~~~ 250 (258)
T TIGR00363 237 YQSEEVYQAAQKHF 250 (258)
T ss_pred HcCHHHHHHHHHHc
Confidence 99999998887653
No 41
>PF03401 TctC: Tripartite tricarboxylate transporter family receptor; InterPro: IPR005064 Bordetella pertussis, the causative agent of human whooping cough (pertussis), is an obligate human pathogen with diverse high-affinity transport systems for the assimilation of iron, a biometal that is essential for growth []. Periplasmic binding proteins of a new family, particularly well represented in this organism (and more generally in beta-proteobacteria), have been called Bug receptors []. They adopt a characteristic Venus flytrap fold with two globular domains bisected by a ligand-binding cleft. The family is specific for carboxylated solutes, with a characteristic mode of binding involving two highly conserved beta strand-beta turn-alpha helix motifs originating from each domain. These two motifs form hydrogen bonds with a carboxylate group of the ligand, both directly and via conserved water molecules, and have thus been termed the carboxylate pincers. Domain 1 recognises the ligand and the carboxylate group serves as an initial anchoring point. Domain 2 discriminates between productively and non-productively bound ligands as proper interactions with this domain is needed for the of the closed conformation []. BugE has a glutamate bound ligand. No charged residues are involved in glutamate binding by BugE, unlike what has been described for all glutamate receptors reported so far. The Bug architecture is highly conserved despite limited sequence identity [].; GO: 0030288 outer membrane-bounded periplasmic space; PDB: 2QPQ_C 2DVZ_A 2F5X_A.
Probab=46.46 E-value=2.6e+02 Score=26.31 Aligned_cols=34 Identities=12% Similarity=0.236 Sum_probs=22.2
Q ss_pred ecccceeEEEEeccccccCCCCCCCCHHHhcCc--cccCceee
Q 016927 102 PYRWGTMVIAYKKSKFRKHNLAPIEDWKDLWRP--ELAGRISM 142 (380)
Q Consensus 102 P~~~~~~gi~Yn~d~~~~~g~~~p~sW~dL~~~--~~~gki~~ 142 (380)
.+.....+++.|+|. +-+||+||.+- +..|++.+
T Consensus 74 ~~~~~~~vl~v~~ds-------p~~t~~eli~~ak~~p~~~~~ 109 (274)
T PF03401_consen 74 RIASDPNVLVVRADS-------PYKTLEELIEYAKANPGKLTF 109 (274)
T ss_dssp EEEEEEEEEEEETTS-------S-SSHHHHHHHHHCSCCC-EE
T ss_pred hhhccceEEEEeCCC-------ccccHHHHHHHHHhCCCCeEE
Confidence 344456788888874 77999999975 23466654
No 42
>PF09084 NMT1: NMT1/THI5 like; InterPro: IPR015168 This entry is found in the NMT1 and THI5 proteins. These proteins are proposed to be required for the biosynthesis of the pyrimidine moiety of thiamine [, , ]. They are regulated by thiamine []. ; PDB: 2X26_A 3E4R_A 3KSJ_A 3KSX_A 3UIF_A 4DDD_A 1US4_A 1US5_A 3IX1_B 2X7P_A ....
Probab=45.96 E-value=2.1e+02 Score=25.12 Aligned_cols=122 Identities=14% Similarity=0.192 Sum_probs=66.0
Q ss_pred eeEEEEeccccccCCCCCCCCHHHhcCccccCc-eeeecCh-hH-HHHHHHHHcCCCCCCCChhhhhccchHHHHHHHHH
Q 016927 107 TMVIAYKKSKFRKHNLAPIEDWKDLWRPELAGR-ISMVNSP-RE-VIGSVLKYMGASYNSNNIDLQVAGGKISVQQNLAL 183 (380)
Q Consensus 107 ~~gi~Yn~d~~~~~g~~~p~sW~dL~~~~~~gk-i~~~~~~-~~-~~~~al~~~G~~~~~~~~~~~~~~~~~~~~~~L~~ 183 (380)
...++++++. ..+|+.|| +|| |++.... .. .+..+|...|.++++..
T Consensus 74 ~~~l~~~~~s-------~i~~~~DL-----kGK~i~v~~~s~~~~~~~~~l~~~g~~~~~v~------------------ 123 (216)
T PF09084_consen 74 PNALVVRKDS-------GIKSPADL-----KGKKIGVSRGSSSEYFLRALLKKNGIDPDDVK------------------ 123 (216)
T ss_dssp CEEEEEETTT-------S-SSGGGG-----TTSEEEESTTSHHHHHHHHHHHHTTT-GGGSE------------------
T ss_pred ceEEEEeccC-------CCCCHHHh-----CCCEEEEecCcchhHHHHHHHHHhccccccce------------------
Confidence 4567777653 46788877 444 6665532 22 33444555666432110
Q ss_pred HhhhcccccchhHHHHhHcCCEEEEEechh--cHHHHHHcCCCcEEEcc-CCCc-cceeeeEEEeCC--CCCcccccCCC
Q 016927 184 LANQARLFDSTHYLKAFGIGDVWVAVGWSS--DVLPAVKRMSNVAVVVP-KSGA-SLWADLWAIPAA--SRLETKQIGGR 257 (380)
Q Consensus 184 l~~~v~~~~~~~~~~~~~~Gev~~~~~~s~--~~~~~~~~~~~i~~~~P-~eG~-~~~~d~~~I~k~--s~~~~~~~~~~ 257 (380)
.......+...+|.+|+++.+..|.. ....+...+..+.+... ..|. ..-.+.++.... .+|++
T Consensus 124 ----~v~~~~~~~~~al~~g~vDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pe------ 193 (216)
T PF09084_consen 124 ----IVNLGPPELAQALLSGQVDAAILWYPPWEPYEIASKGKKLRVLELSDYGPPNYPVSVLVARDEFLEKNPE------ 193 (216)
T ss_dssp ----EEES-HHHHHHHHHTTSSSEEEEEEECTCHHHHHHCCSCEEEEEGGGCCGGCS-SEEEEEEHHHHHHSHH------
T ss_pred ----eeeeehhhhhhhhhcCCCCEEEEccCChHHHHHHHcCCceeeeeccccCcccccceEEEEchHHHHHCHH------
Confidence 00112234445889999988874443 45666667777766543 3454 333445555543 23555
Q ss_pred CCCChHHHHHHHHHHhh
Q 016927 258 VRGPSPLIHQWIEFCLQ 274 (380)
Q Consensus 258 ~~~~~~~A~~fi~flls 274 (380)
.+.+|+.-+..
T Consensus 194 ------~~~~f~~a~~~ 204 (216)
T PF09084_consen 194 ------AVKAFLKAYAK 204 (216)
T ss_dssp ------HHHHHHHHHHH
T ss_pred ------HHHHHHHHHHH
Confidence 88888887665
No 43
>PRK11553 alkanesulfonate transporter substrate-binding subunit; Provisional
Probab=42.57 E-value=2.2e+02 Score=26.86 Aligned_cols=69 Identities=14% Similarity=0.120 Sum_probs=39.6
Q ss_pred chhHHHHhHcCCEEEEEechhcHHHHHHcCCCcEEEccCCCccceeeeEEEeCC--CCCcccccCCCCCCChHHHHHHHH
Q 016927 193 STHYLKAFGIGDVWVAVGWSSDVLPAVKRMSNVAVVVPKSGASLWADLWAIPAA--SRLETKQIGGRVRGPSPLIHQWIE 270 (380)
Q Consensus 193 ~~~~~~~~~~Gev~~~~~~s~~~~~~~~~~~~i~~~~P~eG~~~~~d~~~I~k~--s~~~~~~~~~~~~~~~~~A~~fi~ 270 (380)
..+..++|.+|+++++..|......+..++ ...+....++.....+.+++.+. .+|++ .+.+|++
T Consensus 165 ~~~~~~al~~G~vDa~~~~ep~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~------------~v~~~l~ 231 (314)
T PRK11553 165 PADARAAFQQGNVDAWAIWDPYYSAALLQG-GVRVLKDGTDLNQTGSFYLAARPYAEKNGA------------FIQQVLA 231 (314)
T ss_pred hHHHHHHHHcCCCCEEEEcCcHHHHHHhcC-CcEEeecCcccCcCceEEEEcHHHHHHCHH------------HHHHHHH
Confidence 346678999999999999877665554432 23333332221111223333332 35666 8888887
Q ss_pred HHhh
Q 016927 271 FCLQ 274 (380)
Q Consensus 271 flls 274 (380)
-+..
T Consensus 232 a~~~ 235 (314)
T PRK11553 232 TLTE 235 (314)
T ss_pred HHHH
Confidence 6654
No 44
>PRK11119 proX glycine betaine transporter periplasmic subunit; Provisional
Probab=39.74 E-value=3.7e+02 Score=26.20 Aligned_cols=34 Identities=12% Similarity=0.161 Sum_probs=24.8
Q ss_pred hHHHHhHcCCEEEEEechhcHHHHHH-cCCCcEEE
Q 016927 195 HYLKAFGIGDVWVAVGWSSDVLPAVK-RMSNVAVV 228 (380)
Q Consensus 195 ~~~~~~~~Gev~~~~~~s~~~~~~~~-~~~~i~~~ 228 (380)
+...++.+|+..+...|+.+....+- .+.++.+.
T Consensus 193 ~l~~A~~~~epiv~~~W~Phw~~~~~~~~~dl~~L 227 (331)
T PRK11119 193 DTIARYKEGKPVLYYTWTPYWVSDVLKPGKDVVWL 227 (331)
T ss_pred HHHHHHHcCCCEEEEEecchhHHhhccCCCCeEEe
Confidence 44568899999999999999876553 33356554
No 45
>PF13379 NMT1_2: NMT1-like family; PDB: 2G29_A 3UN6_A 2I4C_A 2I49_A 2I4B_A 2I48_A 3QSL_A.
Probab=35.61 E-value=3.4e+02 Score=24.67 Aligned_cols=134 Identities=13% Similarity=0.131 Sum_probs=72.3
Q ss_pred ccceeEEEEeccccccCCCCCCCCHHHhcCccc--cCc-eeeec--ChhHH-HHHHHHHcCCCCCCCChhhhhccchHHH
Q 016927 104 RWGTMVIAYKKSKFRKHNLAPIEDWKDLWRPEL--AGR-ISMVN--SPREV-IGSVLKYMGASYNSNNIDLQVAGGKISV 177 (380)
Q Consensus 104 ~~~~~gi~Yn~d~~~~~g~~~p~sW~dL~~~~~--~gk-i~~~~--~~~~~-~~~al~~~G~~~~~~~~~~~~~~~~~~~ 177 (380)
..+...++.+++.... ...++|+||..... +|+ |++.. +..+. +..+|...|.++.+ +-
T Consensus 88 ~~~g~~lvv~~~~~~~---~~~~~~~dl~~~~~~~kGk~i~~~~~gs~~~~~l~~~l~~~Gl~~~~-dv----------- 152 (252)
T PF13379_consen 88 SQNGNALVVRNDLKDA---SDIKSLADLIKKRKAQKGKKIAVPFPGSTHDMLLRYLLKKAGLDPKD-DV----------- 152 (252)
T ss_dssp SBSSEEEEECGGGTTC---STTCCGHHHHHTCCSCSTEEEEESSTTSHHHHHHHHHHHHTT--TTT-SS-----------
T ss_pred CCCceEEEEcCccccC---CCccCHHHHHhhhcccCCcEEEEcCCCCHHHHHHHHHHHhCCCCccc-ce-----------
Confidence 3455678888875443 36789999976422 564 55532 33333 33455677876511 10
Q ss_pred HHHHHHHhhhcccccchhHHHHhHcCCEEEEEechhcHHHHHHcCCCcEEEccCC--CccceeeeEEEeCC--CCCcccc
Q 016927 178 QQNLALLANQARLFDSTHYLKAFGIGDVWVAVGWSSDVLPAVKRMSNVAVVVPKS--GASLWADLWAIPAA--SRLETKQ 253 (380)
Q Consensus 178 ~~~L~~l~~~v~~~~~~~~~~~~~~Gev~~~~~~s~~~~~~~~~~~~i~~~~P~e--G~~~~~d~~~I~k~--s~~~~~~ 253 (380)
.+..+...+..++|.+|+++.++.|......+..++.-....-..+ |.. -...++..+. .+|++
T Consensus 153 ---------~~~~~~~~~~~~al~~g~iDa~~~~eP~~~~~~~~g~g~~v~~~~~~~~~~-p~~~~~~~~~~~~~~p~-- 220 (252)
T PF13379_consen 153 ---------TLVNVPPPEMVAALRAGEIDAAVLWEPFASQAEAKGIGKIVADSGDVWGNH-PCCVIVARRDFLEENPE-- 220 (252)
T ss_dssp ---------EEEE--GHHHHHHHHTTS-SEEEEETTHHHHHHHTTS-EEEEEHHHCSTT--B-EEEEEEHHHHHH-HH--
T ss_pred ---------EEEecCHHHHHHHHhCCCcCEEEecCCHHHHHHhccCCeEEEEeccccCCC-CeEEEEECHHHHHHCHH--
Confidence 1222334677889999999999999988877776654222211110 110 1112344433 34666
Q ss_pred cCCCCCCChHHHHHHHHHHhh
Q 016927 254 IGGRVRGPSPLIHQWIEFCLQ 274 (380)
Q Consensus 254 ~~~~~~~~~~~A~~fi~flls 274 (380)
.+.+|++-+.+
T Consensus 221 ----------~v~~~~~a~~~ 231 (252)
T PF13379_consen 221 ----------AVKAFLEALQE 231 (252)
T ss_dssp ----------HHHHHHHHHHH
T ss_pred ----------HHHHHHHHHHH
Confidence 88888887665
No 46
>PF07637 PSD5: Protein of unknown function (DUF1595); InterPro: IPR013043 A region of similarity shared by several Rhodopirellula baltica cytochrome-like proteins that are predicted to be secreted. These proteins also contain IPR011478 from INTERPRO, IPR013036 from INTERPRO, IPR013039 from INTERPRO and IPR013042 from INTERPRO.
Probab=32.94 E-value=97 Score=22.31 Aligned_cols=41 Identities=17% Similarity=0.302 Sum_probs=34.9
Q ss_pred cccCCCHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHH
Q 016927 331 FLEPLSEATLSDYEWLVADLQKPAPVLMKRVQHYLSSLIQS 371 (380)
Q Consensus 331 ~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~ 371 (380)
|=++++++..+.+..++....+.+...-..++.-+..+++|
T Consensus 15 fRRp~~~~e~~~~~~~~~~~~~~g~~~~~a~~~~l~aiL~S 55 (64)
T PF07637_consen 15 FRRPLTDEEVDRYLALYDSARAQGEDFEEALKEALQAILCS 55 (64)
T ss_pred hCCCCCHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcC
Confidence 35677777799999999999988888889999888888876
No 47
>COG2998 TupB ABC-type tungstate transport system, permease component [Coenzyme metabolism]
Probab=32.22 E-value=72 Score=29.54 Aligned_cols=74 Identities=7% Similarity=-0.019 Sum_probs=41.4
Q ss_pred HhHcCCEEEEEechhcHHHHHHcCCCcEEEccCCCccceeeeEEE--eCCCCCcccccCCCCCCChHHHHHHHHHHhhHH
Q 016927 199 AFGIGDVWVAVGWSSDVLPAVKRMSNVAVVVPKSGASLWADLWAI--PAASRLETKQIGGRVRGPSPLIHQWIEFCLQTA 276 (380)
Q Consensus 199 ~~~~Gev~~~~~~s~~~~~~~~~~~~i~~~~P~eG~~~~~d~~~I--~k~s~~~~~~~~~~~~~~~~~A~~fi~fllspe 276 (380)
.+++..-+...+-.|.....+. -+.+..++-.+-....+.+..+ |+..++.. -.+|.+||+|++|++
T Consensus 185 ~~A~Ek~aytLtDrgTylaYr~-r~~L~iv~~gd~~L~N~Ysvi~vNP~r~~~vn----------y~~A~kfi~w~~s~~ 253 (280)
T COG2998 185 NMANEKKAYTLTDRGTYLAYRN-RPTLVIVLEGDPSLFNPYSVIAVNPKRVKGVN----------YTAATKFIEWLMSEK 253 (280)
T ss_pred HHhhhhceeEeeccceeeEecC-ccceEEEecCCccccCceeEEEEchhcCCCcC----------chHHHHHHHHHhhHH
Confidence 3455555555555555444432 3455555533333444433332 34444322 238999999999999
Q ss_pred hhchhhh
Q 016927 277 RALPFKQ 283 (380)
Q Consensus 277 ~~~~~~~ 283 (380)
.|..+.+
T Consensus 254 gq~~Ia~ 260 (280)
T COG2998 254 GQNLIAE 260 (280)
T ss_pred HHHHHhh
Confidence 9877654
No 48
>PRK10797 glutamate and aspartate transporter subunit; Provisional
Probab=27.67 E-value=5.3e+02 Score=24.40 Aligned_cols=27 Identities=22% Similarity=0.208 Sum_probs=22.1
Q ss_pred EEEeecccceeEEEEeccccccCCCCCCCCHHHh
Q 016927 98 IWAAPYRWGTMVIAYKKSKFRKHNLAPIEDWKDL 131 (380)
Q Consensus 98 ~Y~vP~~~~~~gi~Yn~d~~~~~g~~~p~sW~dL 131 (380)
.|+-||.....+++++++. .+++|+||
T Consensus 125 ~fS~Py~~~~~~lv~r~~~-------~i~sl~dL 151 (302)
T PRK10797 125 AFSDTIFVVGTRLLTKKGG-------DIKDFADL 151 (302)
T ss_pred eecccEeeccEEEEEECCC-------CCCChHHc
Confidence 4788998889999999872 46889887
No 49
>cd00134 PBPb Bacterial periplasmic transport systems use membrane-bound complexes and substrate-bound, membrane-associated, periplasmic binding proteins (PBPs) to transport a wide variety of substrates, such as, amino acids, peptides, sugars, vitamins and inorganic ions. PBPs have two cell-membrane translocation functions: bind substrate, and interact with the membrane bound complex. A diverse group of periplasmic transport receptors for lysine/arginine/ornithine (LAO), glutamine, histidine, sulfate, phosphate, molybdate, and methanol are included in the PBPb CD.
Probab=27.53 E-value=2.1e+02 Score=24.08 Aligned_cols=67 Identities=12% Similarity=0.060 Sum_probs=42.5
Q ss_pred hhHHHHhHcCCEEEEEechhcHHHHHHcC-CCcEEEccCCCccceeeeEEEeCCCCCcccccCCCCCCChHHHHHHHHHH
Q 016927 194 THYLKAFGIGDVWVAVGWSSDVLPAVKRM-SNVAVVVPKSGASLWADLWAIPAASRLETKQIGGRVRGPSPLIHQWIEFC 272 (380)
Q Consensus 194 ~~~~~~~~~Gev~~~~~~s~~~~~~~~~~-~~i~~~~P~eG~~~~~d~~~I~k~s~~~~~~~~~~~~~~~~~A~~fi~fl 272 (380)
++....+.+|+++.++.+...+.....+. .++.++.+... .....+++.+...+++ .+.+|-+++
T Consensus 136 ~~~~~~l~~g~~d~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~~~~~~~~~~~~~------------l~~~~~~~l 201 (218)
T cd00134 136 AEALAALENGRADAVIVDEIALAALLKKHPPELKIVGPSID--LEPLGFGVAVGKDNKE------------LLDAVNKAL 201 (218)
T ss_pred HHHHHHHHcCCccEEEeccHHHHHHHHhcCCCcEEeccccC--CCccceEEEEcCCCHH------------HHHHHHHHH
Confidence 46678899999999998887766555443 45555433211 1222456666666655 777887777
Q ss_pred hh
Q 016927 273 LQ 274 (380)
Q Consensus 273 ls 274 (380)
.+
T Consensus 202 ~~ 203 (218)
T cd00134 202 KE 203 (218)
T ss_pred HH
Confidence 73
No 50
>PRK09861 cytoplasmic membrane lipoprotein-28; Provisional
Probab=26.10 E-value=2.2e+02 Score=26.92 Aligned_cols=80 Identities=8% Similarity=0.038 Sum_probs=50.4
Q ss_pred cchhHHHHhHcCCEEEEEechhcHHHHHHcCCCcEEEccCCCccceeeeEEEeCCCCCcccccCCCCCCChHHHHHHHHH
Q 016927 192 DSTHYLKAFGIGDVWVAVGWSSDVLPAVKRMSNVAVVVPKSGASLWADLWAIPAASRLETKQIGGRVRGPSPLIHQWIEF 271 (380)
Q Consensus 192 ~~~~~~~~~~~Gev~~~~~~s~~~~~~~~~~~~i~~~~P~eG~~~~~d~~~I~k~s~~~~~~~~~~~~~~~~~A~~fi~f 271 (380)
...+....|.+|.+++++.|...+...--....-....... ..-+...+++...-++.+ ...+|++.
T Consensus 184 ~~~q~~~al~dg~vD~a~i~~~~~~~ag~~~~~~~l~~e~~-~~~~~n~~~~r~~~~~~~------------~~~~lv~~ 250 (272)
T PRK09861 184 EGAQLPRVLDDPKVDVAIISTTYIQQTGLSPVHDSVFIEDK-NSPYVNILVAREDNKNAE------------NVKEFLQS 250 (272)
T ss_pred CHHHhHhhccCcccCEEEEchhHHHHcCCCcccceeEEcCC-CCCeEEEEEEcCCccCCH------------HHHHHHHH
Confidence 34577788999999999998876654211110111122110 112445566666555554 89999999
Q ss_pred HhhHHhhchhhhh
Q 016927 272 CLQTARALPFKQE 284 (380)
Q Consensus 272 llspe~~~~~~~~ 284 (380)
+.|+|+...+-+.
T Consensus 251 ~~s~~v~~~i~~~ 263 (272)
T PRK09861 251 YQSPEVAKAAETI 263 (272)
T ss_pred HcCHHHHHHHHHH
Confidence 9999999887665
No 51
>PF03202 Lipoprotein_10: Putative mycoplasma lipoprotein, C-terminal region; InterPro: IPR004890 This domain is found along with a central domain (IPR004984 from INTERPRO) in a group of Mycoplasma lipoproteins of unknown function.
Probab=25.48 E-value=65 Score=27.21 Aligned_cols=26 Identities=15% Similarity=0.346 Sum_probs=20.9
Q ss_pred eeEEEeCCCCCcccccCCCCCCChHHHHHHHHHHhhHH
Q 016927 239 DLWAIPAASRLETKQIGGRVRGPSPLIHQWIEFCLQTA 276 (380)
Q Consensus 239 d~~~I~k~s~~~~~~~~~~~~~~~~~A~~fi~fllspe 276 (380)
..+.|-++.+..+ ++.+|++|+++..
T Consensus 7 sLIGIhaNekeD~------------aTkkFv~Wll~~~ 32 (135)
T PF03202_consen 7 SLIGIHANEKEDK------------ATKKFVNWLLNSK 32 (135)
T ss_pred ceeeeccCccccH------------HHHHHHHHHHcCc
Confidence 4578888887765 9999999999753
No 52
>smart00062 PBPb Bacterial periplasmic substrate-binding proteins. bacterial proteins, eukaryotic ones are in PBPe
Probab=23.18 E-value=2.3e+02 Score=23.66 Aligned_cols=53 Identities=17% Similarity=0.122 Sum_probs=31.6
Q ss_pred hhHHHHhHcCCEEEEEechhcHHHHHHcC--CCcEEEccCCCccceeeeEEEeCCC
Q 016927 194 THYLKAFGIGDVWVAVGWSSDVLPAVKRM--SNVAVVVPKSGASLWADLWAIPAAS 247 (380)
Q Consensus 194 ~~~~~~~~~Gev~~~~~~s~~~~~~~~~~--~~i~~~~P~eG~~~~~d~~~I~k~s 247 (380)
.+...++.+|++++++.+........... .++.+ ++........-.+++.++.
T Consensus 137 ~~~~~~l~~g~~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 191 (219)
T smart00062 137 AEALAALKAGRADAAVADAPALAALVKQHGLPELKI-VGDPLDTPEGYAFAVRKGD 191 (219)
T ss_pred HHHHHHhhcCcccEEEeccHHHHHHHHhcCCCceee-ccCCCCCCcceEEEEECCC
Confidence 45667899999999999888665555443 34443 3322222133356666664
Done!