Query 016927
Match_columns 380
No_of_seqs 193 out of 2021
Neff 7.9
Searched_HMMs 29240
Date Mon Mar 25 06:06:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016927.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016927hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gl0_A LMO0810 protein; struct 100.0 2.5E-45 8.7E-50 354.6 23.5 296 7-352 35-330 (333)
2 4eqb_A Spermidine/putrescine A 100.0 4.6E-43 1.6E-47 337.9 23.5 295 7-352 33-327 (330)
3 3ttm_A Polyamine transport pro 100.0 8.7E-42 3E-46 330.6 24.1 301 7-352 32-345 (346)
4 3ttn_A Polyamine transport pro 100.0 1.1E-40 3.8E-45 321.5 23.8 300 7-351 29-340 (340)
5 1pot_A POTD, spermidine/putres 100.0 1.8E-38 6.1E-43 305.0 24.3 296 7-352 28-323 (325)
6 1a99_A POTF, putrescine-bindin 100.0 1E-35 3.6E-40 287.6 21.8 301 7-352 28-342 (344)
7 2v84_A Spermidine/putrescine A 100.0 2.5E-34 8.7E-39 278.6 22.4 289 7-352 49-342 (343)
8 4i1d_A ABC transporter substra 100.0 3.7E-32 1.3E-36 260.6 20.8 259 41-351 56-322 (324)
9 4euo_A ABC transporter, substr 100.0 4.8E-32 1.6E-36 259.9 16.7 258 41-353 53-314 (320)
10 3pu5_A Extracellular solute-bi 100.0 3.6E-30 1.2E-34 247.6 23.7 288 3-352 3-324 (333)
11 3rpw_A ABC transporter; struct 100.0 4.2E-30 1.5E-34 250.4 19.1 233 41-309 86-322 (365)
12 4edp_A ABC transporter, substr 100.0 4E-28 1.4E-32 233.6 17.3 265 30-350 77-349 (351)
13 2qry_A Thiamine-binding peripl 99.9 8.1E-25 2.8E-29 210.6 18.6 240 7-307 52-298 (330)
14 3quf_A Extracellular solute-bi 99.9 1.3E-24 4.5E-29 214.8 14.5 255 5-290 54-341 (414)
15 3k01_A Acarbose/maltose bindin 99.9 4.2E-24 1.4E-28 211.3 17.0 324 6-369 56-408 (412)
16 3uor_A ABC transporter sugar b 99.9 1.5E-23 5.1E-28 210.8 19.3 328 5-370 55-414 (458)
17 1xvx_A YFUA; periplasmic iron 99.9 2.1E-23 7.3E-28 198.5 19.3 223 7-283 30-264 (312)
18 3c9h_A ABC transporter, substr 99.9 1.5E-23 5.2E-28 203.7 18.1 226 7-284 60-296 (355)
19 3e13_X Putative iron-uptake AB 99.9 7.1E-23 2.4E-27 194.9 20.3 240 7-307 27-287 (322)
20 1elj_A Maltodextrin-binding pr 99.9 1.4E-22 4.7E-27 198.5 21.8 247 6-288 34-303 (381)
21 2pt1_A Iron transport protein; 99.9 2.6E-23 8.8E-28 199.8 16.1 244 7-307 44-303 (334)
22 1nnf_A Iron-utilization peripl 99.9 1.5E-22 5E-27 192.2 19.9 226 6-284 24-261 (309)
23 1q35_A Iron binding protein FB 99.9 1.2E-22 4.2E-27 193.7 16.4 244 7-307 27-283 (320)
24 2voz_A FUTA2, periplasmic iron 99.9 4E-22 1.4E-26 192.2 17.9 229 30-307 69-315 (346)
25 2gha_A Maltose ABC transporter 99.9 5.9E-22 2E-26 194.1 18.3 242 8-284 30-298 (382)
26 4dxb_A RG13, maltose-binding p 99.9 9.8E-23 3.4E-27 213.5 13.5 248 7-291 32-302 (637)
27 2zyo_A Solute-binding protein; 99.9 1.7E-21 5.8E-26 191.6 21.3 244 7-284 48-315 (397)
28 3ob4_A Conglutin, maltose ABC 99.9 2.6E-22 8.8E-27 204.5 14.3 224 41-291 56-302 (500)
29 3mq9_A Bone marrow stromal ant 99.9 1.6E-21 5.6E-26 197.2 19.8 225 41-292 70-317 (471)
30 1y9u_A Putative iron binding p 99.9 2.6E-21 8.8E-26 184.8 19.2 237 7-307 31-291 (323)
31 3n94_A Fusion protein of malto 99.9 2.4E-21 8.1E-26 195.7 19.3 218 41-284 58-298 (475)
32 3iot_A Maltose-binding protein 99.9 1.1E-21 3.9E-26 196.7 16.7 224 41-291 56-302 (449)
33 2b3f_A Glucose-binding protein 99.9 9.5E-22 3.3E-26 193.9 15.4 246 6-284 29-311 (400)
34 1eu8_A Trehalose/maltose bindi 99.9 2.6E-21 8.9E-26 191.0 17.9 255 5-284 31-327 (409)
35 4hs7_A Bacterial extracellular 99.9 1.4E-20 4.6E-25 186.7 22.6 219 40-284 93-336 (420)
36 4hw8_A Bacterial extracellular 99.9 7.7E-21 2.6E-25 188.4 20.5 224 41-292 94-342 (420)
37 2gh9_A Maltose/maltodextrin-bi 99.9 3.9E-21 1.3E-25 188.5 17.6 246 7-284 29-302 (386)
38 2xz3_A Maltose ABC transporter 99.9 9.7E-21 3.3E-25 191.1 20.8 243 6-284 32-297 (463)
39 1mh3_A Maltose binding-A1 home 99.9 3.7E-21 1.3E-25 190.7 16.5 218 41-284 56-296 (421)
40 2vgq_A Maltose-binding peripla 99.9 2E-20 6.8E-25 189.3 21.8 221 41-288 71-314 (477)
41 2heu_A Sugar ABC transporter, 99.9 4.5E-21 1.5E-25 189.1 16.7 221 41-284 71-327 (401)
42 3oai_A Maltose-binding peripla 99.9 4.5E-21 1.5E-25 194.2 17.0 218 41-284 56-296 (507)
43 1urs_A Maltose-binding protein 99.9 3E-21 1E-25 190.3 15.2 216 41-284 85-321 (402)
44 3py7_A Maltose-binding peripla 99.9 8.5E-21 2.9E-25 194.2 18.8 224 41-291 57-303 (523)
45 1y4c_A Maltose binding protein 99.9 6.7E-21 2.3E-25 193.8 17.2 218 41-284 56-296 (494)
46 3oo8_A ABC transporter binding 99.9 6E-21 2.1E-25 188.6 16.3 217 41-283 82-333 (415)
47 2xd3_A MALX, maltose/maltodext 99.9 1.4E-20 4.7E-25 186.5 18.0 243 7-284 61-333 (416)
48 1hsj_A Fusion protein consisti 99.9 9.7E-21 3.3E-25 191.7 17.2 218 41-284 56-296 (487)
49 3h3g_A Fusion protein of malto 99.8 1.1E-20 3.9E-25 194.0 17.1 224 41-291 58-304 (539)
50 3osr_A Maltose-binding peripla 99.8 1.3E-20 4.3E-25 197.6 16.9 225 41-292 92-339 (653)
51 3csg_A MBP, maltose-binding pr 99.8 1.2E-20 4E-25 189.9 16.0 243 6-284 29-294 (461)
52 3o3u_N Maltose-binding peripla 99.8 3.1E-20 1.1E-24 191.0 19.0 218 41-284 56-296 (581)
53 3f5f_A Maltose-binding peripla 99.8 1.8E-20 6E-25 197.1 17.1 218 41-284 56-296 (658)
54 3mp6_A MBP, SGF29, maltose-bin 99.8 2E-20 6.9E-25 191.5 16.7 224 41-291 57-303 (522)
55 2zxt_A Maltose-binding peripla 99.8 8.9E-21 3E-25 191.4 13.8 218 41-284 56-296 (465)
56 3h4z_A Maltose-binding peripla 99.8 2E-20 6.8E-25 193.5 16.3 225 41-292 56-303 (568)
57 4aq4_A SN-glycerol-3-phosphate 99.8 6.4E-20 2.2E-24 180.6 18.5 265 4-292 32-330 (419)
58 1r6z_P Chimera of maltose-bind 99.8 3.2E-20 1.1E-24 189.3 16.7 218 41-284 57-297 (509)
59 4exk_A Maltose-binding peripla 99.8 9.7E-20 3.3E-24 185.0 19.7 218 41-284 60-300 (487)
60 4h1g_A Maltose binding protein 99.8 1.2E-19 4E-24 192.4 19.8 218 41-284 57-297 (715)
61 3thi_A Protein (thiaminase I); 99.8 1.4E-19 4.7E-24 176.0 18.7 220 40-283 48-296 (371)
62 4b3n_A Maltose-binding peripla 99.8 3.9E-20 1.3E-24 192.6 15.4 218 41-284 70-310 (602)
63 2z8f_A Galacto-N-biose/lacto-N 99.8 8.6E-20 2.9E-24 180.5 16.7 247 5-280 44-320 (412)
64 2uvj_A TOGB, ABC type periplas 99.8 1.4E-19 4.8E-24 178.5 16.4 249 6-282 34-317 (408)
65 4g68_A ABC transporter; transp 99.8 1.6E-19 5.3E-24 181.3 16.5 245 6-284 92-378 (456)
66 3i3v_A Probable secreted solut 99.8 1.6E-20 5.3E-25 185.0 8.4 253 6-292 38-329 (405)
67 3osq_A Maltose-binding peripla 99.8 1.9E-19 6.5E-24 189.0 16.2 105 175-292 471-585 (661)
68 3dm0_A Maltose-binding peripla 99.8 9.4E-19 3.2E-23 183.8 15.8 218 41-284 56-296 (694)
69 2nvu_B Maltose binding protein 99.8 2E-18 6.7E-23 185.4 15.1 218 41-284 60-300 (805)
70 2w7y_A FCSSBP, probable sugar 99.8 2.7E-19 9.2E-24 177.8 7.1 229 41-292 99-350 (430)
71 4gqo_A LMO0859 protein; virule 99.8 2.9E-18 1E-22 170.1 13.1 255 5-284 57-349 (433)
72 1sbp_A Sulfate-binding protein 99.7 2.5E-17 8.6E-22 156.1 14.6 182 41-283 57-257 (310)
73 3a09_A ALGQ1; sugar binding pr 99.7 6.1E-17 2.1E-21 162.8 11.0 225 41-282 67-346 (490)
74 3omb_A Extracellular solute-bi 99.7 3.4E-17 1.2E-21 167.5 7.6 248 7-282 69-383 (535)
75 3vlv_A ALGQ1; sugar binding pr 99.7 6.4E-17 2.2E-21 164.4 8.9 224 41-282 67-346 (502)
76 3cg1_A UPF0100 protein PF0080; 99.6 7.6E-15 2.6E-19 138.8 15.1 159 99-283 83-290 (296)
77 3cfx_A UPF0100 protein MA_0280 99.5 9.2E-13 3.1E-17 124.7 18.4 154 99-283 78-290 (296)
78 3cij_A UPF0100 protein AF_0094 99.5 1.4E-12 4.7E-17 123.3 17.5 154 99-283 78-289 (295)
79 3r26_A Molybdate-binding perip 99.4 1.1E-11 3.6E-16 113.7 18.2 142 101-283 82-231 (237)
80 3cfz_A UPF0100 protein MJ1186; 99.3 3.4E-11 1.2E-15 113.5 16.5 152 99-283 78-286 (292)
81 2hxw_A Major antigenic peptide 99.3 2.1E-11 7.1E-16 110.7 13.4 139 103-284 78-227 (237)
82 3gzg_A Molybdate-binding perip 99.2 2.2E-10 7.6E-15 106.2 16.0 140 101-283 98-247 (253)
83 1atg_A MODA, periplasmic molyb 99.2 2.1E-10 7.2E-15 102.3 15.1 152 100-291 74-230 (231)
84 3k6v_A Solute-binding protein 98.5 5.7E-06 1.9E-10 80.1 19.3 73 194-283 230-328 (354)
85 3muq_A Uncharacterized conserv 92.7 0.16 5.5E-06 45.9 5.9 66 209-283 169-234 (237)
86 3ksx_A Nitrate transport prote 87.7 16 0.00056 33.3 17.5 122 106-274 111-237 (324)
87 3lr1_A Tungstate ABC transport 83.5 1.2 4.3E-05 39.9 5.0 63 212-282 172-234 (236)
88 4gd5_A Phosphate ABC transport 79.8 1.7 5.8E-05 39.5 4.6 33 239-283 240-272 (279)
89 3kn3_A Putative periplasmic pr 78.7 4.4 0.00015 36.5 6.9 73 203-283 164-239 (242)
90 3qsl_A Putative exported prote 71.8 57 0.0019 29.4 15.7 130 100-274 110-255 (346)
91 2v3u_A Glutamate receptor delt 65.0 66 0.0022 27.5 12.8 155 98-285 97-256 (265)
92 4h1x_A PBP 2, phosphate-bindin 52.6 14 0.00047 33.5 4.5 23 264-288 117-139 (265)
93 3n5l_A Binding protein compone 50.5 1.4E+02 0.0049 26.9 12.7 189 7-274 35-227 (310)
94 3g3k_A Glutamate receptor, ion 49.3 1.2E+02 0.0042 25.7 12.7 125 98-248 101-226 (259)
95 3ix1_A N-formyl-4-amino-5-amin 44.6 1.6E+02 0.0056 25.9 13.8 128 100-274 80-216 (302)
96 3cvg_A Putative metal binding 44.0 22 0.00075 32.2 4.5 36 236-283 234-270 (294)
97 2x26_A Periplasmic aliphatic s 43.8 70 0.0024 28.4 8.0 68 194-274 142-211 (308)
98 4ecf_A ABC-type phosphate tran 39.6 32 0.0011 30.7 4.9 25 264-289 219-243 (264)
99 3k4u_A Binding component of AB 39.3 1.7E+02 0.0058 24.5 10.7 110 98-246 83-198 (245)
100 3uif_A Sulfonate ABC transport 37.4 94 0.0032 28.4 8.0 90 98-222 91-183 (348)
101 3c5t_B Exendin-4, exenatide; l 36.2 20 0.00069 21.3 1.9 13 264-276 10-22 (31)
102 3hv1_A Polar amino acid ABC up 35.0 2.1E+02 0.0072 24.3 10.4 116 98-246 99-218 (268)
103 4exl_A PBP 1, phosphate-bindin 34.9 40 0.0014 30.1 4.7 24 264-288 219-242 (265)
104 3kbr_A Cyclohexadienyl dehydra 31.2 52 0.0018 27.6 4.7 111 98-245 93-207 (239)
105 1ii5_A SLR1257 protein; membra 29.4 1E+02 0.0034 25.5 6.2 125 98-274 86-213 (233)
106 3kzg_A Arginine 3RD transport 29.2 2E+02 0.0069 23.8 8.3 88 98-223 82-170 (237)
107 1t5q_A Gastric inhibitory poly 28.3 34 0.0012 20.2 1.9 11 264-274 18-28 (30)
108 2l63_A GLP-2, glucagon-like pe 27.1 37 0.0012 20.5 2.0 13 264-276 18-30 (33)
109 1twy_A ABC transporter, peripl 25.9 1.5E+02 0.0051 25.4 6.9 20 264-283 251-270 (290)
110 2g49_C Glucagon preproprotein; 25.2 39 0.0013 19.7 1.8 11 264-274 18-28 (29)
111 1jrj_A Exendin-4; Trp-CAGE, GL 25.2 40 0.0014 21.1 2.0 13 264-276 18-30 (39)
112 4ef1_A Pheromone COB1/lipoprot 24.7 39 0.0013 30.3 2.7 78 192-285 157-237 (246)
113 3iol_B Glucagon; receptor-liga 22.2 49 0.0017 19.6 1.9 12 263-274 17-28 (31)
114 4got_A Methionine-binding lipo 22.2 53 0.0018 29.4 3.0 79 192-285 159-240 (249)
115 1oef_A Apolipoprotein E; glyco 21.6 41 0.0014 18.8 1.4 21 332-352 3-23 (26)
116 2b4n_A Gastric inhibitory poly 21.2 53 0.0018 20.9 1.9 13 264-276 18-30 (42)
117 4h5g_A Amino acid ABC superfam 21.0 3.7E+02 0.013 22.5 10.8 112 98-247 93-208 (243)
No 1
>4gl0_A LMO0810 protein; structural genomics, IDP05673, spermidine, putrescine, ABC transporter, niaid; HET: MSE PGE PG4; 1.92A {Listeria monocytogenes}
Probab=100.00 E-value=2.5e-45 Score=354.63 Aligned_cols=296 Identities=22% Similarity=0.346 Sum_probs=252.2
Q ss_pred ceEEEEEEcccHHHHHHhcccchhHhhcCCCCCCCccEEEeCcHHHHHHHHcCcccccccCCCccccCCCChhhHHHHhh
Q 016927 7 RLKFQMNLCASIDGIVNNLSVPFNKVKAKSAPYMAADLVSVGDSWLSFAIKKRLIEPIAGAEDQDWFKCLSHKWKVYLRR 86 (380)
Q Consensus 7 ~v~v~~~~~gs~~~~~~~~~~~~~kl~ag~~~~~~~Dvv~~~~~~~~~~~~~gll~pld~~~~~~~~~~~~~~~~~~~~~ 86 (380)
+|+|+.+..++.++++ +||++|+. .+|||++++.++.+++++|+|+|||.+ .++|+.++.+.+..
T Consensus 35 GIkV~~~~~~s~e~~~-------~kl~ag~~---~~DVv~~~~~~~~~~~~~gll~~ld~~----~~~n~~~~~~~~~~- 99 (333)
T 4gl0_A 35 GIKVIYQTFDSNEAMM-------TKIEQGGT---TFDIAVPSDYAISKMKEENLLIPLDHS----KLPNEKYLDPRFMD- 99 (333)
T ss_dssp CCEEEEEEESCHHHHH-------HHHHTCSS---CCSEECCBHHHHHHHHHTTCBCCCCGG----GCGGGGGBCGGGSS-
T ss_pred CCEEEEEeCCCHHHHH-------HHHHcCCC---CCeEEEeCHHHHHHHHHcCCccccccc----cccccccCCHHHhh-
Confidence 3555555555555444 45777765 699999999999999999999999976 45666555444332
Q ss_pred hCCCccCCCCCEEEeecccceeEEEEeccccccCCCCCCCCHHHhcCccccCceeeecChhHHHHHHHHHcCCCCCCCCh
Q 016927 87 NDAGEIDPRGKIWAAPYRWGTMVIAYKKSKFRKHNLAPIEDWKDLWRPELAGRISMVNSPREVIGSVLKYMGASYNSNNI 166 (380)
Q Consensus 87 ~~~~~~d~~g~~Y~vP~~~~~~gi~Yn~d~~~~~g~~~p~sW~dL~~~~~~gki~~~~~~~~~~~~al~~~G~~~~~~~~ 166 (380)
..+++ |+.|++||.+++++|+||++++++ .+|+||++|++|+++|++.+.+.+.+.++.++.++|.+.+..++
T Consensus 100 ---~~~~~-~~~y~vp~~~~~~~i~yn~~~~~~---~~~~sw~dl~dp~~kg~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 172 (333)
T 4gl0_A 100 ---LSFDD-DNKYSMPYFWGTLGIIYNKEMFPD---KNFDTWNALFDPELKNQILLIDGAREVMGLGLNSLGYSLNDTNK 172 (333)
T ss_dssp ---CGGGG-GGSSEEEEEEEEEEEEEETTTCTT---CCTTSGGGGGCGGGTTCEEEESCHHHHHHHHHHHTTCCTTCCCH
T ss_pred ---hccCC-CCceEeceeeeeeeeeechhhccc---CCcccHHhhcCHHhhhccccCCcHHHHHHHHHHHHhhcccCCCH
Confidence 34554 667999999999999999999986 37899999999999999999999999999999999998887766
Q ss_pred hhhhccchHHHHHHHHHHhhhcccccchhHHHHhHcCCEEEEEechhcHHHHHHcCCCcEEEccCCCccceeeeEEEeCC
Q 016927 167 DLQVAGGKISVQQNLALLANQARLFDSTHYLKAFGIGDVWVAVGWSSDVLPAVKRMSNVAVVVPKSGASLWADLWAIPAA 246 (380)
Q Consensus 167 ~~~~~~~~~~~~~~L~~l~~~v~~~~~~~~~~~~~~Gev~~~~~~s~~~~~~~~~~~~i~~~~P~eG~~~~~d~~~I~k~ 246 (380)
+. +.++.+.+..+++++..+++++..+.|++|+++|+++|++++..++..+.++.+++|++|+.+|+++++|+|+
T Consensus 173 ~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ge~~~~~~~~~~~~~~~~~~~~~~~~~p~eG~~~~~~~~~I~k~ 247 (333)
T 4gl0_A 173 AH-----LQAARDKLETMTPNVKAIVGDEIKLLMADNEAGVAVTFSGEAAEMLSENEDLEYVIPKDGSNLWFDNMVIPKT 247 (333)
T ss_dssp HH-----HHHHHHHHHHHGGGEEEEESTTHHHHTSCC-CCEEEEEHHHHHHHHHHCTTEEEECCSSCEEEEEEEEECBTT
T ss_pred HH-----HHHHHHHHHhhccccceecchhhhhhhhccchheehhhhHHHHHHHhhccccccccCCCCCccccceEEEEcC
Confidence 51 5677888889999988888888889999999999999999999999999999999999999999999999999
Q ss_pred CCCcccccCCCCCCChHHHHHHHHHHhhHHhhchhhhhhcCCCCCCccccccccCChhHhcCCCCCCCccccCCCCHHHH
Q 016927 247 SRLETKQIGGRVRGPSPLIHQWIEFCLQTARALPFKQEVIPGASPSALETTLVKLPEELLKGKPSQDTNLIVGVPPAEIL 326 (380)
Q Consensus 247 s~~~~~~~~~~~~~~~~~A~~fi~fllspe~~~~~~~~~~~~~~p~~~~~a~~~l~~e~~~~~p~~~~~l~~~~p~~~~~ 326 (380)
++|++ +|++||||++|||+|+.+++. .+|++|+ ..+...+|+++++++ .++|+.+.+
T Consensus 248 a~n~e------------~A~~fi~fllspe~q~~~~~~-~gy~~~n--~~a~~~l~~~~~~~~--------~~~p~~~~~ 304 (333)
T 4gl0_A 248 AKNVD------------GAHKFINFMLKPENAAINAEY-VGYATPN--AKAVELLPKEISSDE--------RFYPDMDEL 304 (333)
T ss_dssp CSCHH------------HHHHHHHHHHSHHHHHHHHHH-HCCBCCB--HHHHHHSCHHHHTCT--------TTSCCGGGG
T ss_pred CCCHH------------HHHHHHHHhcCHHHHHHHHHH-hCCCCcc--HHHHHhCCHHHHhCc--------ccCCCHHHH
Confidence 99998 999999999999999999976 6777776 567778999998864 368999999
Q ss_pred hhcccccCCCHHHHHHHHHHHHHhcC
Q 016927 327 ARCEFLEPLSEATLSDYEWLVADLQK 352 (380)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~w~~~~~ 352 (380)
++++++.+++++..++|+++|+++|.
T Consensus 305 ~~~~~~~~~~~~~~~~~~~~w~~~K~ 330 (333)
T 4gl0_A 305 NNLEVYDNLGKRMLSYYNELFLEFKM 330 (333)
T ss_dssp TTEECCCCCCHHHHHHHHHHHHHHHH
T ss_pred hhCeehhcCCHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999983
No 2
>4eqb_A Spermidine/putrescine ABC superfamily ATP binding transporter, binding protein; structural genomics, niaid; HET: EPE; 1.50A {Streptococcus pneumoniae TCH8431}
Probab=100.00 E-value=4.6e-43 Score=337.89 Aligned_cols=295 Identities=22% Similarity=0.343 Sum_probs=255.0
Q ss_pred ceEEEEEEcccHHHHHHhcccchhHhhcCCCCCCCccEEEeCcHHHHHHHHcCcccccccCCCccccCCCChhhHHHHhh
Q 016927 7 RLKFQMNLCASIDGIVNNLSVPFNKVKAKSAPYMAADLVSVGDSWLSFAIKKRLIEPIAGAEDQDWFKCLSHKWKVYLRR 86 (380)
Q Consensus 7 ~v~v~~~~~gs~~~~~~~~~~~~~kl~ag~~~~~~~Dvv~~~~~~~~~~~~~gll~pld~~~~~~~~~~~~~~~~~~~~~ 86 (380)
+|+|+.+..++.++++++ |++++. .|||+++++.++.++++.|+|+|||.+ .+++++++.+.++.
T Consensus 33 gi~V~~~~~~~~~~~~~k-------l~a~~~---~~Dv~~~~~~~~~~~~~~g~l~~l~~~----~~~~~~~~~~~~~~- 97 (330)
T 4eqb_A 33 GIQVQYETFDSNEAMYTK-------IKQGGT---TYDIAIPSEYMINKMKDEDLLVPLDYS----KIEGIENIGPEFLN- 97 (330)
T ss_dssp CCEEEEEEESSHHHHHHH-------HHHCCS---CCSEECCBHHHHHHHHHTTCBCCCCGG----GCCCGGGBCGGGSS-
T ss_pred CCEEEEEeCCCHHHHHHH-------HhcCCC---CCCEEEECHHHHHHHHHCCCccCCChh----hCcChhhCCHHHHc-
Confidence 577777777776666655 777654 599999999999999999999999964 35666666555543
Q ss_pred hCCCccCCCCCEEEeecccceeEEEEeccccccCCCCCCCCHHHhcCccccCceeeecChhHHHHHHHHHcCCCCCCCCh
Q 016927 87 NDAGEIDPRGKIWAAPYRWGTMVIAYKKSKFRKHNLAPIEDWKDLWRPELAGRISMVNSPREVIGSVLKYMGASYNSNNI 166 (380)
Q Consensus 87 ~~~~~~d~~g~~Y~vP~~~~~~gi~Yn~d~~~~~g~~~p~sW~dL~~~~~~gki~~~~~~~~~~~~al~~~G~~~~~~~~ 166 (380)
..+++ |+.||+||.+++.+|+||+++|++ +|+||++|++++++|++++.+.+.+.++.++.+.|.++++.++
T Consensus 98 ---~~~~~-g~~y~vP~~~~~~~l~Ynkd~~~~----~p~tw~el~~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~ 169 (330)
T 4eqb_A 98 ---QSFDP-GNKFSIPYFWGTLGIVYNETMVDE----APEHWDDLWKLEYKNSIMLFDGAREVLGLGLNSLGYSLNSKDP 169 (330)
T ss_dssp ---CTTSG-GGSSCEEEEEEEEEEEEEGGGCSS----CCCSGGGGGCGGGTTCEEEESCHHHHHHHHHHHTTCCTTCCCH
T ss_pred ---cCcCC-CCeEEEEEecccEEEEEEHHHcCC----CCCCHHHHhChHhcCCeEEecCHHHHHHHHHHHcCCCCCCCCH
Confidence 23443 788999999999999999999986 8999999999999999999998888888888999998887765
Q ss_pred hhhhccchHHHHHHHHHHhhhcccccchhHHHHhHcCCEEEEEechhcHHHHHHcCCCcEEEccCCCccceeeeEEEeCC
Q 016927 167 DLQVAGGKISVQQNLALLANQARLFDSTHYLKAFGIGDVWVAVGWSSDVLPAVKRMSNVAVVVPKSGASLWADLWAIPAA 246 (380)
Q Consensus 167 ~~~~~~~~~~~~~~L~~l~~~v~~~~~~~~~~~~~~Gev~~~~~~s~~~~~~~~~~~~i~~~~P~eG~~~~~d~~~I~k~ 246 (380)
+ .+.++.+.|.++++++..|+.++..+.|.+|+++|++.|++.+..+++.++++++++|++|+.+|.++++|+++
T Consensus 170 ~-----~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~P~~g~~~~~~~~~i~~~ 244 (330)
T 4eqb_A 170 Q-----QLEETVDKLYKLTPNIKAIVADEMKGYMIQNNVAIGVTFSGEASQMLEKNENLRYVVPTEASNLWFDNMVIPKT 244 (330)
T ss_dssp H-----HHHHHHHHHHTTGGGEEEEESTTHHHHHHTTCCSEEEEEHHHHHHHHHHCTTEEEECCTTCEEEEEEEEBCBTT
T ss_pred H-----HHHHHHHHHHHHhhHhheeCcHHHHHHHhcCCEEEEEechHHHHHHHhhCCCeEEEeCCCccceEEEEEEEECC
Confidence 4 25688999999999988888788899999999999999999999888889999999999999999999999999
Q ss_pred CCCcccccCCCCCCChHHHHHHHHHHhhHHhhchhhhhhcCCCCCCccccccccCChhHhcCCCCCCCccccCCCCHHHH
Q 016927 247 SRLETKQIGGRVRGPSPLIHQWIEFCLQTARALPFKQEVIPGASPSALETTLVKLPEELLKGKPSQDTNLIVGVPPAEIL 326 (380)
Q Consensus 247 s~~~~~~~~~~~~~~~~~A~~fi~fllspe~~~~~~~~~~~~~~p~~~~~a~~~l~~e~~~~~p~~~~~l~~~~p~~~~~ 326 (380)
++|++ +|++||+|+++||+|+.+++. .+|.+|+ ..+...+++++++++ .++|+.+.+
T Consensus 245 s~~~~------------~A~~fi~~l~s~e~~~~~~~~-~g~~p~~--~~a~~~l~~~~~~~~--------~~~p~~~~~ 301 (330)
T 4eqb_A 245 VKNQD------------SAYAFINFMLKPENALQNAEY-VGYSTPN--LPAKELLPEETKEDK--------AFYPDVETM 301 (330)
T ss_dssp CSCHH------------HHHHHHHHHHSHHHHHHHHHH-HCCBCSB--HHHHHTSCHHHHTCT--------TTSCCHHHH
T ss_pred CCCHH------------HHHHHHHHhcCHHHHHHHHHh-hCCCChh--HHHHHhCCHHHhhCc--------ccCCCHHHH
Confidence 99998 999999999999999999976 5676665 456678999999864 368999999
Q ss_pred hhcccccCCCHHHHHHHHHHHHHhcC
Q 016927 327 ARCEFLEPLSEATLSDYEWLVADLQK 352 (380)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~w~~~~~ 352 (380)
+++.++++++++..+.|+++|+++|+
T Consensus 302 ~~~~~~~~~~~~~~~~~~~~w~~~k~ 327 (330)
T 4eqb_A 302 KHLEVYEKFDHKWTGKYSDLFLQFKM 327 (330)
T ss_dssp HTEECCCCCCHHHHHHHHHHHHHHHH
T ss_pred hhceEecCCCHHHHHHHHHHHHHHHh
Confidence 99999999998899999999999985
No 3
>3ttm_A Polyamine transport protein; polyamine binding, putrescine; 2.00A {Pseudomonas aeruginosa} PDB: 3ttk_A
Probab=100.00 E-value=8.7e-42 Score=330.55 Aligned_cols=301 Identities=19% Similarity=0.320 Sum_probs=253.4
Q ss_pred ceEEEEEEcccHHHHHHhcccchhHhhcCCCCCCCccEEEeCcHHHHHHHHcCcccccccCCCccccCCCChhhHHHHhh
Q 016927 7 RLKFQMNLCASIDGIVNNLSVPFNKVKAKSAPYMAADLVSVGDSWLSFAIKKRLIEPIAGAEDQDWFKCLSHKWKVYLRR 86 (380)
Q Consensus 7 ~v~v~~~~~gs~~~~~~~~~~~~~kl~ag~~~~~~~Dvv~~~~~~~~~~~~~gll~pld~~~~~~~~~~~~~~~~~~~~~ 86 (380)
+|+|+.+..++.+++.++ |++|+. .|||+.+++.++.++++.|+|+|||.+ .+++++++.+.++..
T Consensus 32 gi~V~~~~~~~~~~~~~k-------l~ag~~---~~Dv~~~~~~~~~~~~~~g~l~~ld~~----~~~~~~~~~~~~~~~ 97 (346)
T 3ttm_A 32 GIKVVYDVYDSNEVLEAK-------LLAGKS---GYDVVVPSNSFLAKQIKAGVYQKLDKS----KLPNWKNLNKDLMHT 97 (346)
T ss_dssp CCEEEEEEESCHHHHHHH-------HHHSCC---SCSEECCBHHHHHHHHHTTCBCCCCGG----GCGGGGGBCHHHHHH
T ss_pred CCEEEEEecCCHHHHHHH-------HHcCCC---CCcEEEeCHHHHHHHHHCCCcccCChh----hCcChhhcCHHHHhc
Confidence 577777777776655544 777754 599999999999999999999999964 356667776766642
Q ss_pred hCCCccCCCCCEEEeecccceeEEEEecccccc-CCCC-CCCCHHHhcCccccCc-----eeeecChhHHHHHHHHHcCC
Q 016927 87 NDAGEIDPRGKIWAAPYRWGTMVIAYKKSKFRK-HNLA-PIEDWKDLWRPELAGR-----ISMVNSPREVIGSVLKYMGA 159 (380)
Q Consensus 87 ~~~~~~d~~g~~Y~vP~~~~~~gi~Yn~d~~~~-~g~~-~p~sW~dL~~~~~~gk-----i~~~~~~~~~~~~al~~~G~ 159 (380)
. ..++ +|+.|++|+.+++.+|+||+++|++ +|++ +|+||+||++++++|+ +++.+.+...+..++.+.|.
T Consensus 98 ~--~~~~-~g~~y~vP~~~~~~~l~Ynkd~~~~~~G~~~~p~tw~dl~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~G~ 174 (346)
T 3ttm_A 98 L--EVSD-PGNEHAIPYMWGTIGIGYNPDKVKAAFGDNAPVDSWDLVFKPENIQKLKQCGVSFLDSPTEILPAALHYLGY 174 (346)
T ss_dssp H--TTTS-GGGCSEEEEEEEEEEEEECHHHHHHHHCTTCCTTSTHHHHSHHHHHHHTTTCEEECSCHHHHHHHHHHHTTS
T ss_pred c--ccCC-CCCeEEeEEeeccEEEEEEhHHhhhhccCCCCCCcHHHHhChhhhccccCCcEEEECCHHHHHHHHHHHcCC
Confidence 1 1244 3889999999999999999999999 8987 8999999999977654 57778888888888899999
Q ss_pred CCCCCChhhhhccchHHHHHHHHHHhhhcccccchhHHHHhHcCCEEEEEechhcHHHHHH------cCCCcEEEccCCC
Q 016927 160 SYNSNNIDLQVAGGKISVQQNLALLANQARLFDSTHYLKAFGIGDVWVAVGWSSDVLPAVK------RMSNVAVVVPKSG 233 (380)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~L~~l~~~v~~~~~~~~~~~~~~Gev~~~~~~s~~~~~~~~------~~~~i~~~~P~eG 233 (380)
+++..+.+ .+.++.+.|.++++++..|++++..+.|.+|+++|++.|++++...+. .+.++.+++|++|
T Consensus 175 ~~~~~~~~-----~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~g 249 (346)
T 3ttm_A 175 KPDTDNPK-----ELKAAEELFLKIRPYVTYFHSSKYISDLANGNICVAIGYSGDIYQAKSRAEEAKNKVTVKYNIPKEG 249 (346)
T ss_dssp CTTCCCHH-----HHHHHHHHHHHHGGGCCEECSSTHHHHHHHTSCSEEEEEHHHHHHHHHHHHHHTSSCCCEEECCTTC
T ss_pred CCCCCCHH-----HHHHHHHHHHHHhHhhheeCChhHHHHHhcCCeEEEEeccHHHHHHHHhhhhcccCCceEEEEcCCC
Confidence 88776654 256889999999999988877788899999999999999999877653 3778999999999
Q ss_pred ccceeeeEEEeCCCCCcccccCCCCCCChHHHHHHHHHHhhHHhhchhhhhhcCCCCCCccccccccCChhHhcCCCCCC
Q 016927 234 ASLWADLWAIPAASRLETKQIGGRVRGPSPLIHQWIEFCLQTARALPFKQEVIPGASPSALETTLVKLPEELLKGKPSQD 313 (380)
Q Consensus 234 ~~~~~d~~~I~k~s~~~~~~~~~~~~~~~~~A~~fi~fllspe~~~~~~~~~~~~~~p~~~~~a~~~l~~e~~~~~p~~~ 313 (380)
+.+|.++++|+++++|++ +|++||+|+++||+|+.+++. .+|.+++ ..+...+++++++++
T Consensus 250 ~~~~~~~~~I~~~s~~~~------------~A~~fi~fl~s~e~q~~~~~~-~g~~p~~--~~a~~~~~~~~~~~~---- 310 (346)
T 3ttm_A 250 AGSFFDMVAIPKDAENTE------------GALAFVNFLMKPEIMAEITDV-VQFPNGN--AAATPLVSEAIRNDP---- 310 (346)
T ss_dssp EEEEEEEEECBTTCSCSH------------HHHHHHHHHTSHHHHHHHHHH-HCCCBSB--TTTGGGSCHHHHTCT----
T ss_pred ceEEEEEEEEECCCCCHH------------HHHHHHHHhcCHHHHHHHHHh-hCCCCcc--HHHHhhCCHHHhhCC----
Confidence 999999999999999998 999999999999999999976 5665555 466778999999864
Q ss_pred CccccCCCCHHHHhhcccccCCCHHHHHHHHHHHHHhcC
Q 016927 314 TNLIVGVPPAEILARCEFLEPLSEATLSDYEWLVADLQK 352 (380)
Q Consensus 314 ~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~ 352 (380)
.++|+.+.++++.++++++++..+.++++|+++|+
T Consensus 311 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~ 345 (346)
T 3ttm_A 311 ----GIYPSEEVMKKLYTFPDLPAKTQRAMTRSWTKIKS 345 (346)
T ss_dssp ----TTSCCHHHHTTEEECCCCCHHHHHHHHHHHHHHHC
T ss_pred ----CcCCCHHHHhhCeeecCCCHHHHHHHHHHHHHHhc
Confidence 36899999999999999999889999999999985
No 4
>3ttn_A Polyamine transport protein; polyamine binding protein, spermidine; HET: SPD; 2.00A {Pseudomonas aeruginosa} PDB: 3ttl_A*
Probab=100.00 E-value=1.1e-40 Score=321.48 Aligned_cols=300 Identities=21% Similarity=0.354 Sum_probs=250.5
Q ss_pred ceEEEEEEcccHHHHHHhcccchhHhhcCCCCCCCccEEEeCcHHHHHHHHcCcccccccCCCccccCCCChhhHHHHhh
Q 016927 7 RLKFQMNLCASIDGIVNNLSVPFNKVKAKSAPYMAADLVSVGDSWLSFAIKKRLIEPIAGAEDQDWFKCLSHKWKVYLRR 86 (380)
Q Consensus 7 ~v~v~~~~~gs~~~~~~~~~~~~~kl~ag~~~~~~~Dvv~~~~~~~~~~~~~gll~pld~~~~~~~~~~~~~~~~~~~~~ 86 (380)
+|+|+.+..++.+++.+ ||++|+. .|||+.+++.++.++++.|+|+|||.+ .+++++++.+.++..
T Consensus 29 gi~V~~~~~~~~~~~~~-------~l~ag~~---~~Dv~~~~~~~~~~~~~~g~l~~l~~~----~~~~~~~~~~~~~~~ 94 (340)
T 3ttn_A 29 GIDVSYDVFDSNETLEG-------KLVSGHS---GYDIVVPSNNFLGKQIQAGAFQKLDKS----KLPNWKNLDPALLKQ 94 (340)
T ss_dssp CCCEEEEEESSHHHHHH-------HHHTSCC---CCSEECCBHHHHHHHHHTTCBCCCCGG----GCGGGGGSCHHHHHH
T ss_pred CCEEEEEecCCHHHHHH-------HHHcCCC---CCcEEEECHHHHHHHHHCCCcCcCChh----hCcChhhcCHHHHhc
Confidence 56777776677665554 4777654 599999999999999999999999964 355666666666542
Q ss_pred hCCCccCCCCCEEEeecccceeEEEEecccccc-CCCCCCCCHHHhcCccccCc-----eeeecChhHHHHHHHHHcCCC
Q 016927 87 NDAGEIDPRGKIWAAPYRWGTMVIAYKKSKFRK-HNLAPIEDWKDLWRPELAGR-----ISMVNSPREVIGSVLKYMGAS 160 (380)
Q Consensus 87 ~~~~~~d~~g~~Y~vP~~~~~~gi~Yn~d~~~~-~g~~~p~sW~dL~~~~~~gk-----i~~~~~~~~~~~~al~~~G~~ 160 (380)
. ..++ +|+.|++|+.+++.+|+||+++|++ +|+++|+||+||++++++|+ +.+.+.+...+..++.+.|.+
T Consensus 95 ~--~~~~-~g~~y~vP~~~~~~~l~Ynkd~~~~a~G~~~P~tw~dl~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~G~~ 171 (340)
T 3ttn_A 95 L--EVSD-PGNQYAVPYLWGTNGIGYNVAKVKEVLGDQPIDSWAILFEPENMKKLAKCGVAFMDSGDEMLPAALNYLGLD 171 (340)
T ss_dssp H--TTTS-GGGCSEEEEEEEEEEEEEEHHHHHHHHCSCCCCSTHHHHCHHHHHHHGGGCEEECSCHHHHHHHHHHHTTSC
T ss_pred c--cccC-CCCeEEeEEEeeeeEEEEehHHhccccCCCCCccHHHHhChhhhccccCCeEEEECCHHHHHHHHHHHcCCC
Confidence 1 1233 3889999999999999999999999 69989999999999977665 567787888888888899998
Q ss_pred CCCCChhhhhccchHHHHHHHHHHhhhcccccchhHHHHhHcCCEEEEEechhcHHHHHH------cCCCcEEEccCCCc
Q 016927 161 YNSNNIDLQVAGGKISVQQNLALLANQARLFDSTHYLKAFGIGDVWVAVGWSSDVLPAVK------RMSNVAVVVPKSGA 234 (380)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~L~~l~~~v~~~~~~~~~~~~~~Gev~~~~~~s~~~~~~~~------~~~~i~~~~P~eG~ 234 (380)
++..+.. .+.++.+.|.++++++..|.+++..+.|.+|+++|++.|++++...+. .+.++.+++|++|+
T Consensus 172 ~~~~~~~-----~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~g~ 246 (340)
T 3ttn_A 172 PNTHDPK-----DYKKAEEVLTKVRPYVSYFHSSKYISDLANGNICVAFGYSGDVFQAAARAEEAGKGIDIQYVIPKEGA 246 (340)
T ss_dssp TTCCCHH-----HHHHHHHHHHHHGGGCCEECSSHHHHHHHHTSCSEEEEEHHHHHHHHHHHHHHTSCCCEEEECCTTCC
T ss_pred CCCCCHH-----HHHHHHHHHHHHhHHhheeCCchHHHHHhcCCeEEEEeccHHHHHHHHhhhhccCCCceEEEeCCCcc
Confidence 8766654 256889999999999888877788899999999999999999876653 37789999999999
Q ss_pred cceeeeEEEeCCCCCcccccCCCCCCChHHHHHHHHHHhhHHhhchhhhhhcCCCCCCccccccccCChhHhcCCCCCCC
Q 016927 235 SLWADLWAIPAASRLETKQIGGRVRGPSPLIHQWIEFCLQTARALPFKQEVIPGASPSALETTLVKLPEELLKGKPSQDT 314 (380)
Q Consensus 235 ~~~~d~~~I~k~s~~~~~~~~~~~~~~~~~A~~fi~fllspe~~~~~~~~~~~~~~p~~~~~a~~~l~~e~~~~~p~~~~ 314 (380)
..|.++++|+++++|++ +|++||+|+++||+|..+++. .+|.+++ ..+...+++++++++
T Consensus 247 ~~~~~~~~i~~~s~~~~------------~A~~fi~~l~s~e~q~~~~~~-~g~~p~~--~~a~~~~~~~~~~~~----- 306 (340)
T 3ttn_A 247 NLWFDLMAIPADAKAAD------------NAYAFIDYLLRPEVIAKVSDY-VGYANAI--PGARPLMDKSVSDSE----- 306 (340)
T ss_dssp EEEEEEEECBTTCSCHH------------HHHHHHHHHTSHHHHHHHHHH-HCCEESC--GGGGGGSCHHHHTBT-----
T ss_pred ceeEEEEEEECCCCCHH------------HHHHHHHHhcCHHHHHHHHHh-cCCCCcc--HHHHhhCCHHHHhCC-----
Confidence 99999999999999998 999999999999999999976 5665555 466778999998864
Q ss_pred ccccCCCCHHHHhhcccccCCCHHHHHHHHHHHHHhc
Q 016927 315 NLIVGVPPAEILARCEFLEPLSEATLSDYEWLVADLQ 351 (380)
Q Consensus 315 ~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~ 351 (380)
.++|+.+.++++.++++++++..+.++++|+++|
T Consensus 307 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~k 340 (340)
T 3ttn_A 307 ---EVYPPQAVLDKLYVSAVLPAKVLRLQTRTWTRIK 340 (340)
T ss_dssp ---TTSCCHHHHTTCEECCCCCHHHHHHHHHHHHHHC
T ss_pred ---CCCCCHHHHhhcccccCCCHHHHHHHHHHHHhcC
Confidence 3689999999999999999989999999999986
No 5
>1pot_A POTD, spermidine/putrescine-binding protein; polyamine transport protein; HET: SPD; 1.80A {Escherichia coli} SCOP: c.94.1.1 PDB: 1poy_1*
Probab=100.00 E-value=1.8e-38 Score=304.96 Aligned_cols=296 Identities=23% Similarity=0.333 Sum_probs=241.5
Q ss_pred ceEEEEEEcccHHHHHHhcccchhHhhcCCCCCCCccEEEeCcHHHHHHHHcCcccccccCCCccccCCCChhhHHHHhh
Q 016927 7 RLKFQMNLCASIDGIVNNLSVPFNKVKAKSAPYMAADLVSVGDSWLSFAIKKRLIEPIAGAEDQDWFKCLSHKWKVYLRR 86 (380)
Q Consensus 7 ~v~v~~~~~gs~~~~~~~~~~~~~kl~ag~~~~~~~Dvv~~~~~~~~~~~~~gll~pld~~~~~~~~~~~~~~~~~~~~~ 86 (380)
+++|+.+..++.+++.++ |++++. ..|||+.++..++..+++.|+|+||+.+ .+++++++.+.+..
T Consensus 28 gi~V~~~~~~~~~~~~~k-------l~a~~~--~~pDv~~~~~~~~~~~~~~g~l~~l~~~----~~~~~~~~~~~~~~- 93 (325)
T 1pot_A 28 GIKVIYSTYESNETMYAK-------LKTYKD--GAYDLVVPSTYYVDKMRKEGMIQKIDKS----KLTNFSNLDPDMLN- 93 (325)
T ss_dssp CEEEEEEEESCHHHHHHH-------HTTCSS--SCSSBBCCBGGGHHHHHHHTCBCCCCTT----SCTTGGGBCGGGSC-
T ss_pred CCEEEEEecCCHHHHHHH-------HhcCCC--CCCcEEEECHHHHHHHHHCCCcCCCChh----hCcChhhcCHHHhc-
Confidence 578877777777676655 666541 3699999999999999999999999964 23454444443332
Q ss_pred hCCCccCCCCCEEEeecccceeEEEEeccccccCCCCCCCCHHHhcCccccCceeeecChhHHHHHHHHHcCCCCCCCCh
Q 016927 87 NDAGEIDPRGKIWAAPYRWGTMVIAYKKSKFRKHNLAPIEDWKDLWRPELAGRISMVNSPREVIGSVLKYMGASYNSNNI 166 (380)
Q Consensus 87 ~~~~~~d~~g~~Y~vP~~~~~~gi~Yn~d~~~~~g~~~p~sW~dL~~~~~~gki~~~~~~~~~~~~al~~~G~~~~~~~~ 166 (380)
...+ +|+.|++|+.+++.+|+||+++|+++ +|+||+||++++++|++++.+.+.+.+..++.+.|.++++.+.
T Consensus 94 ---~~~~-~g~~y~vP~~~~~~~l~Ynkd~~~~~---p~~tw~dl~~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~ 166 (325)
T 1pot_A 94 ---KPFD-PNNDYSIPYIWGATAIGVNGDAVDPK---SVTSWADLWKPEYKGSLLLTDDAREVFQMALRKLGYSGNTTDP 166 (325)
T ss_dssp ---CTTS-TTCSSCEEEEEEEEEEEEETTTSCTT---TCCSSGGGGSGGGTTCEEECSCHHHHHHHHHHHTTCCTTCCCH
T ss_pred ---cCCC-CCCcEEeeEeeeeEEEEEEHHHcCCC---CCCCHHHHcCHHhcCcEEEEcCHHHHHHHHHHHcCCCCCCCCH
Confidence 1233 48899999999999999999999873 5699999999999999999887777777778888988766554
Q ss_pred hhhhccchHHHHHHHHHHhhhcccccchhHHHHhHcCCEEEEEechhcHHHHHHcCCCcEEEccCCCccceeeeEEEeCC
Q 016927 167 DLQVAGGKISVQQNLALLANQARLFDSTHYLKAFGIGDVWVAVGWSSDVLPAVKRMSNVAVVVPKSGASLWADLWAIPAA 246 (380)
Q Consensus 167 ~~~~~~~~~~~~~~L~~l~~~v~~~~~~~~~~~~~~Gev~~~~~~s~~~~~~~~~~~~i~~~~P~eG~~~~~d~~~I~k~ 246 (380)
. ...++.+.|.++++++..|.+++..+.|.+|+++|+++|++.+......+.++++++|++|..+|.++++|+++
T Consensus 167 ~-----~~~~a~~~l~~l~~~~~~~~~~~~~~~f~~G~~~~~~~~~~~~~~~~~~~~~~~~~~P~~g~~~~~~~~~i~~~ 241 (325)
T 1pot_A 167 K-----EIEAAYNELKKLMPNVAAFNSDNPANPYMEGEVNLGMIWNGSAFVARQAGTPIDVVWPKEGGIFWMDSLAIPAN 241 (325)
T ss_dssp H-----HHHHHHHHHHHTGGGEEEECSSCTHHHHHTTSCSEEEEEHHHHHHHHTTSCCEEEECCTTCCEEEEEEEBCBTT
T ss_pred H-----HHHHHHHHHHHHHHHHhhcCCchHhHHHhcCCEEEEEeecHHHHHHhhcCCCeEEEECCCcceEEEEEEEEECC
Confidence 3 15678899999988876676667788999999999999999988777777899999999999999999999999
Q ss_pred CCCcccccCCCCCCChHHHHHHHHHHhhHHhhchhhhhhcCCCCCCccccccccCChhHhcCCCCCCCccccCCCCHHHH
Q 016927 247 SRLETKQIGGRVRGPSPLIHQWIEFCLQTARALPFKQEVIPGASPSALETTLVKLPEELLKGKPSQDTNLIVGVPPAEIL 326 (380)
Q Consensus 247 s~~~~~~~~~~~~~~~~~A~~fi~fllspe~~~~~~~~~~~~~~p~~~~~a~~~l~~e~~~~~p~~~~~l~~~~p~~~~~ 326 (380)
++|++ +|++||+|+++||.|+.+++. .++.+|+ ..+...+++++++++ .++|+.+.+
T Consensus 242 s~~~~------------~A~~fi~~l~s~e~q~~~~~~-~g~~p~~--~~~~~~l~~~~~~~~--------~~~~~~~~~ 298 (325)
T 1pot_A 242 AKNKE------------GALKLINFLLRPDVAKQVAET-IGYPTPN--LAARKLLSPEVANDK--------TLYPDAETI 298 (325)
T ss_dssp CTTHH------------HHHHHHHHHHSHHHHHHHHHH-HCCCCSB--STTTTTSCHHHHTCT--------TTSCCHHHH
T ss_pred CCCHH------------HHHHHHHHHhCHHHHHHHHHh-hCCCCcc--HHHHHhcCHHHHhCc--------ccCCCHHHH
Confidence 99998 999999999999999999875 4665554 455667899988753 247889999
Q ss_pred hhcccccCCCHHHHHHHHHHHHHhcC
Q 016927 327 ARCEFLEPLSEATLSDYEWLVADLQK 352 (380)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~w~~~~~ 352 (380)
+++.++.++++. .+.++++|+++|+
T Consensus 299 ~~~~~~~~~~~~-~~~~~~~w~~~~~ 323 (325)
T 1pot_A 299 KNGEWQNDVGAA-SSIYEEYYQKLKA 323 (325)
T ss_dssp HHSEECCCCGGG-HHHHHHHHHHHTT
T ss_pred hhcccccCCCHH-HHHHHHHHHHHhc
Confidence 999999888776 8999999999996
No 6
>1a99_A POTF, putrescine-binding protein; transport, periplasmic putrescine binding protein (POTF); 2.20A {Escherichia coli} SCOP: c.94.1.1
Probab=100.00 E-value=1e-35 Score=287.62 Aligned_cols=301 Identities=23% Similarity=0.361 Sum_probs=236.5
Q ss_pred ceEEEEEEcccHHHHHHhcccchhHhhcCCCCCCCccEEEeCcHHHHHHHHcCcccccccCCCccccCCCChhhHHHHhh
Q 016927 7 RLKFQMNLCASIDGIVNNLSVPFNKVKAKSAPYMAADLVSVGDSWLSFAIKKRLIEPIAGAEDQDWFKCLSHKWKVYLRR 86 (380)
Q Consensus 7 ~v~v~~~~~gs~~~~~~~~~~~~~kl~ag~~~~~~~Dvv~~~~~~~~~~~~~gll~pld~~~~~~~~~~~~~~~~~~~~~ 86 (380)
+++|+.+..++.+++.++ |++++. .|||+.++..++..+++.|+|+||+.. .+++++++.+.+++.
T Consensus 28 gi~V~~~~~~~~~~~~~k-------l~a~~~---~pDv~~~~~~~~~~~~~~g~l~~l~~~----~~~~~~~~~~~~~~~ 93 (344)
T 1a99_A 28 GIKVVYDVFDSNEVLEGK-------LMAGST---GFDLVVPSASFLERQLTAGVFQPLDKS----KLPEWKNLDPELLKL 93 (344)
T ss_dssp CCEEEEEEESCHHHHHHH-------HHHCCC---CCSEECCBHHHHHHHHHTTCBCCCCGG----GCGGGGGBCHHHHHH
T ss_pred CCEEEEEecCCHHHHHHH-------HHcCCC---CCcEEEECHHHHHHHHHCCCcccCChh----hCcChhhcCHHHhhh
Confidence 577777777776666555 666543 599999988899999999999999964 234555565655442
Q ss_pred hCCCccCCCCCEEEeecccceeEEEEeccccccC-CCC-CCCCHHHhcCccccCcee-----eecChhHHHHHHHHHcCC
Q 016927 87 NDAGEIDPRGKIWAAPYRWGTMVIAYKKSKFRKH-NLA-PIEDWKDLWRPELAGRIS-----MVNSPREVIGSVLKYMGA 159 (380)
Q Consensus 87 ~~~~~~d~~g~~Y~vP~~~~~~gi~Yn~d~~~~~-g~~-~p~sW~dL~~~~~~gki~-----~~~~~~~~~~~al~~~G~ 159 (380)
. ..++ +|+.||+|+.+++.+|+||+++|+++ |++ +|+||+||+++++++++. +.+.+.+.+..++.+.|.
T Consensus 94 ~--~~~~-~g~~y~vP~~~~~~~l~Ynkd~~~~alGl~~~p~tw~el~~~~~~~k~~~~g~~~~~~~~~~~~~~~~~~G~ 170 (344)
T 1a99_A 94 V--AKHD-PDNKFAMPYMWATTGIGYNVDKVKAVLGENAPVDSWDLILKPENLEKLKSCGVSFLDAPEEVFATVLNYLGK 170 (344)
T ss_dssp H--HTTS-GGGCSEEEEEEEEEEEEEEHHHHHHHHCTTCCTTSTHHHHSHHHHHHHGGGCEEECSCHHHHHHHHHHHTTS
T ss_pred h--hccC-CCCcEEeeEEeeeEEEEEEhHHcccccccCCCCCCHHHHcCHHhcCCcccccccccCCHHHHHHHHHHHcCC
Confidence 1 0243 48899999999999999999999997 987 699999999976666654 556666667777778898
Q ss_pred CCCCCChhhhhccchH-HHHHHHHHHhhhcccccchhHHHHhHcCCEEEEEechhcHHHHHH------cCCCcEEEccCC
Q 016927 160 SYNSNNIDLQVAGGKI-SVQQNLALLANQARLFDSTHYLKAFGIGDVWVAVGWSSDVLPAVK------RMSNVAVVVPKS 232 (380)
Q Consensus 160 ~~~~~~~~~~~~~~~~-~~~~~L~~l~~~v~~~~~~~~~~~~~~Gev~~~~~~s~~~~~~~~------~~~~i~~~~P~e 232 (380)
+++..+.+ .+. ++.+.|.++.+++..++.++..+.|.+|+++|++.|++.+..+.. .+.++++++|++
T Consensus 171 ~~~~~~~~-----~~~~~a~~~l~~l~~~~~~~~~~~~~~~f~~G~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~ 245 (344)
T 1a99_A 171 DPNSTKAD-----DYTGPATDLLLKLRPNIRYFHSSQYINDLANGDICVAIGWAGDVWQASNRAKEAKNGVNVSFSIPKE 245 (344)
T ss_dssp CTTCCCHH-----HHHTHHHHHHHHHGGGCCEECSSTHHHHHHTTSCSEEEEEHHHHHHHHHHHHHHTCSCCEEEECCTT
T ss_pred CCCCCCHH-----HHHHHHHHHHHHhccceeEecChhHHHHhhcCCEEEEEEccHHHHHHHHhccccCCCCceEEEECCC
Confidence 77654443 256 788899999888776766678889999999999999988776654 356899999999
Q ss_pred CccceeeeEEEeCCCCCcccccCCCCCCChHHHHHHHHHHhhHHhhchhhhhhcCCCCCCccccccccCChhHhcCCCCC
Q 016927 233 GASLWADLWAIPAASRLETKQIGGRVRGPSPLIHQWIEFCLQTARALPFKQEVIPGASPSALETTLVKLPEELLKGKPSQ 312 (380)
Q Consensus 233 G~~~~~d~~~I~k~s~~~~~~~~~~~~~~~~~A~~fi~fllspe~~~~~~~~~~~~~~p~~~~~a~~~l~~e~~~~~p~~ 312 (380)
|+..|.++++|+++++|++ +|++||+|++++|.|..+++. .++.+++ ..+...+++++++++
T Consensus 246 g~~~~~~~~~i~~~s~~~~------------~A~~fi~~l~s~e~q~~~~~~-~g~~p~~--~~~~~~~~~~~~~~p--- 307 (344)
T 1a99_A 246 GAMAFFDVFAMPADAKNKD------------EAYQFLNYLLRPDVVAHISDH-VFYANAN--KAATPLVSAEVRENP--- 307 (344)
T ss_dssp CEEEEEEEEECBTTCSCHH------------HHHHHHHHHHSHHHHHHHHHH-HCCEESB--TTTGGGSCHHHHTCT---
T ss_pred CceeEEEeeEEECCCCCHH------------HHHHHHHHHcCHHHHHHHHHh-hCCCCcc--hHHHhhCCHHHhhCc---
Confidence 9999999999999999998 999999999999999998875 4554443 344456889987743
Q ss_pred CCccccCCCCHHHHhhcccccCCCHHHHHHHHHHHHHhcC
Q 016927 313 DTNLIVGVPPAEILARCEFLEPLSEATLSDYEWLVADLQK 352 (380)
Q Consensus 313 ~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~ 352 (380)
.++|..+.++++.+.++++++..+.+.++|+++++
T Consensus 308 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (344)
T 1a99_A 308 -----GIYPPADVRAKLFTLKVQDPKIDRVRTRAWTKVKS 342 (344)
T ss_dssp -----TTSCCHHHHTTEECCCCCCHHHHHHHHHHHHHHHH
T ss_pred -----cCCCCHHHHhhceecccCCHHHHHHHHHHHHHHhc
Confidence 24677889999998888888888999999999874
No 7
>2v84_A Spermidine/putrescine ABC transporter, periplasmi binding protein; polyamine binding, SYPH spermidine, lipoprotein, transport protein; HET: MES; 1.78A {Treponema pallidum}
Probab=100.00 E-value=2.5e-34 Score=278.60 Aligned_cols=289 Identities=21% Similarity=0.277 Sum_probs=226.4
Q ss_pred ceEEEEEEcccHHHHHHhcccchhHhhcCCCCCCCccEEEeCcHHHHHHHHcCcccccccCCCccccCCCChhhHHHHhh
Q 016927 7 RLKFQMNLCASIDGIVNNLSVPFNKVKAKSAPYMAADLVSVGDSWLSFAIKKRLIEPIAGAEDQDWFKCLSHKWKVYLRR 86 (380)
Q Consensus 7 ~v~v~~~~~gs~~~~~~~~~~~~~kl~ag~~~~~~~Dvv~~~~~~~~~~~~~gll~pld~~~~~~~~~~~~~~~~~~~~~ 86 (380)
+|+|+.+..++.+++.++ |++++. .|||+.++..++..+++.|+|+||+.. .+++++++.+.+++.
T Consensus 49 gi~V~~~~~~~~~~~~~k-------l~ag~~---~pDv~~~~~~~~~~~~~~g~l~~l~~~----~~~~~~~~~~~~~~~ 114 (343)
T 2v84_A 49 NVQVVYDDYASNEDMFAK-------LSIGAS---GYDLVVPSGDFVSIMKRKHLLEKIDLS----KIPNVQFIKESVRAR 114 (343)
T ss_dssp TCEEEEEEESCHHHHHHH-------HSSSCC---SCSEECCBHHHHHHHHHTTCEECCCGG----GCGGGGGBCHHHHHH
T ss_pred CCEEEEEeCCCHHHHHHH-------HHcCCC---CCCEEEcCHHHHHHHHHCCCcccCChh----hCcChhhcCHHHhcc
Confidence 466766666665555544 666543 699999998899999999999999863 234455555555432
Q ss_pred hCCCccCCCCCEEEeecccceeEEEEeccccccCCCCCCCCHHHhcCccccCceeeecChhHHHHHHHHHcCCCCCCCCh
Q 016927 87 NDAGEIDPRGKIWAAPYRWGTMVIAYKKSKFRKHNLAPIEDWKDLWRPELAGRISMVNSPREVIGSVLKYMGASYNSNNI 166 (380)
Q Consensus 87 ~~~~~~d~~g~~Y~vP~~~~~~gi~Yn~d~~~~~g~~~p~sW~dL~~~~~~gki~~~~~~~~~~~~al~~~G~~~~~~~~ 166 (380)
. .++ +|+.|++|+.+++.+|+||+++|++ +|+||+||++++++|++++.+.+...+..++.+.|.++++.+.
T Consensus 115 ~---~~~-~G~~y~vP~~~~~~~l~YNkd~~~~----~P~Tw~el~~~~~~g~i~~~~~~~~~~~~~~~~~G~~~~~~~~ 186 (343)
T 2v84_A 115 I---AYD-PKMEYSVPYYLGAAGIAVNKKAVPS----YARTWSIFSRKDLAYRMSMMDDMREVMGAALASLGYNVNTKNE 186 (343)
T ss_dssp C---TTS-TTCSSCEEEEEECCEEEEETTTCCS----CCSSGGGGGCGGGTTSEEECSCHHHHHHHHHHHTTCCTTCCCH
T ss_pred c---ccC-CCceEEeeeEeccEEEEEEhHhcCC----CCCCHHHHhCHHHcCeEEEECChHHHHHHHHHHhCCCCCCCCH
Confidence 1 233 4889999999999999999999987 8999999999999999998876766777777788887765544
Q ss_pred hhhhccchHHHHHHHHH-HhhhcccccchhHHHHhHcCCEEEEEechhcHHH--HHHcCCCcEEEccC-CCccceeeeEE
Q 016927 167 DLQVAGGKISVQQNLAL-LANQARLFDSTHYLKAFGIGDVWVAVGWSSDVLP--AVKRMSNVAVVVPK-SGASLWADLWA 242 (380)
Q Consensus 167 ~~~~~~~~~~~~~~L~~-l~~~v~~~~~~~~~~~~~~Gev~~~~~~s~~~~~--~~~~~~~i~~~~P~-eG~~~~~d~~~ 242 (380)
. ...++.+.|.+ +++++..++.++..+.|.+|+++|++.|++.+.. ..+.+.++++++|. +|...+.++++
T Consensus 187 ~-----~~~~a~~~l~~~l~~~~~~~~~~~~~~~f~~G~~a~~~~~~~~~~~~~~~~~~~~~~~~~P~~~g~~~~~~~~~ 261 (343)
T 2v84_A 187 Q-----ELAQAAILVTDHWKPNLVKFDSDGYAKSFASGDFVVAHGFAEAFFAETPEAMHEHIDFFIPQDVASPVYVDSFC 261 (343)
T ss_dssp H-----HHHHHHHHHHHHTGGGEEEECSSSHHHHHHHTSCSEEEECHHHHHHHSCGGGGGGEEEECCTTTTCEEEEEEEB
T ss_pred H-----HHHHHHHHHHHHHHhhhheeCchHHHHHHhcCCEEEEEEecHHHHHHHHHhcCCCeeEEeeCccCcceeeeeeE
Confidence 3 14678888888 8887766655677889999999999999988776 55566789999998 89889999999
Q ss_pred EeCCCCCcccccCCCCCCChHHHHHHHHHHhhHHhhchhhhhhcCCCC-CCccccccccCChhHhcCCCCCCCccccCCC
Q 016927 243 IPAASRLETKQIGGRVRGPSPLIHQWIEFCLQTARALPFKQEVIPGAS-PSALETTLVKLPEELLKGKPSQDTNLIVGVP 321 (380)
Q Consensus 243 I~k~s~~~~~~~~~~~~~~~~~A~~fi~fllspe~~~~~~~~~~~~~~-p~~~~~a~~~l~~e~~~~~p~~~~~l~~~~p 321 (380)
|+++++|++ +|++||+|++++|.|..+++. .++.+ ++ ..+...++ ++ + . |
T Consensus 262 I~~~s~~~~------------aA~~Fi~~l~s~e~q~~~~~~-~g~~P~~~--~~a~~~~~----~~-----~---~-~- 312 (343)
T 2v84_A 262 IPKGARNRD------------LAHAFINFFLEPAHYAEFLDT-FGFPSTIH--REAAAYQK----KT-----P---Y-Y- 312 (343)
T ss_dssp EETTCSCHH------------HHHHHHHHHTSHHHHHHHHHH-HTCCCSSB--TTGGGGCC----SC-----C---S-S-
T ss_pred EECCCCCHH------------HHHHHHHHHcCHHHHHHHHHh-hCCCCCcc--hhHHHhcc----cc-----c---c-C-
Confidence 999999998 999999999999999999875 45544 43 34444444 22 2 3 5
Q ss_pred CHHHHhhcccccCCCHHHHHHHHHHHHHhcC
Q 016927 322 PAEILARCEFLEPLSEATLSDYEWLVADLQK 352 (380)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~ 352 (380)
+.+.++++.++.++++ ..+.++++|+++|+
T Consensus 313 ~~~~~~~~~~~~~~~~-~~~~~~~~w~~~~~ 342 (343)
T 2v84_A 313 SEHDLERGTLKTDVGA-AIEHYNAHWNAVRF 342 (343)
T ss_dssp CGGGGSSSEECCCCGG-GHHHHHHHHHHHHH
T ss_pred CHHHHhhceeccCCCH-HHHHHHHHHHHHhc
Confidence 5788999999988876 48999999999985
No 8
>4i1d_A ABC transporter substrate-binding protein; structural genomics, PSI-biology; 2.20A {Bradyrhizobium japonicum}
Probab=100.00 E-value=3.7e-32 Score=260.56 Aligned_cols=259 Identities=14% Similarity=0.156 Sum_probs=202.5
Q ss_pred CccEEEeCcHHHHHHHHcCcccccccCCCccccCCCChhhHHHHhhhCCCccCCCCCEEEeecccceeEEEEeccccccC
Q 016927 41 AADLVSVGDSWLSFAIKKRLIEPIAGAEDQDWFKCLSHKWKVYLRRNDAGEIDPRGKIWAAPYRWGTMVIAYKKSKFRKH 120 (380)
Q Consensus 41 ~~Dvv~~~~~~~~~~~~~gll~pld~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~Y~vP~~~~~~gi~Yn~d~~~~~ 120 (380)
.+||+.++..++.++++.|+|+||+.+ .+++++++.+ .+ ++.|++|+.+++.+|+||+++|++
T Consensus 56 ~~Dv~~~~~~~~~~~~~~g~l~~l~~~----~~~~~~~~~~---------~~---~~~y~vp~~~~~~~l~yn~~~~~~- 118 (324)
T 4i1d_A 56 IWDVVDTPTGYCLRGGEQGLIEKLDFS----KIPNAAAMPE---------AY---RSPYSVSYEFYSSVLAYSQKTFPK- 118 (324)
T ss_dssp SCCEEEEEHHHHHHHHHTTCBCCCCGG----GCHHHHTSCG---------GG---BCSSCEEEEEEEEEEEEETTTCSS-
T ss_pred CeEEEECCHHHHHHHHHCCCcccCChh----hCcChhhCCc---------cc---ccCceeeeecceEEEEEehhhcCC-
Confidence 699999999999999999999999854 2333333322 22 356999999999999999999986
Q ss_pred CCCCCCCHHHhcCc-cccCceeeecChhHHHHHHHHHcCCCCCCCChhhhhccchHHHHHHHHHHhhhccccc--chhHH
Q 016927 121 NLAPIEDWKDLWRP-ELAGRISMVNSPREVIGSVLKYMGASYNSNNIDLQVAGGKISVQQNLALLANQARLFD--STHYL 197 (380)
Q Consensus 121 g~~~p~sW~dL~~~-~~~gki~~~~~~~~~~~~al~~~G~~~~~~~~~~~~~~~~~~~~~~L~~l~~~v~~~~--~~~~~ 197 (380)
.+|+||+||+++ +++|++++.+.+...+..++.+.|.++++.++. .+.++++.|.++++++..++ .++..
T Consensus 119 --~~P~tw~dl~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-----~~~~a~~~l~~l~~~~~~~~~~~~~~~ 191 (324)
T 4i1d_A 119 --DAPNSWVDFWDVKKFPGRRALRNHPIATLEAALMADGVAPDKLYPL-----DVDRAFKKLEEIKPHITVWWTSGAQSA 191 (324)
T ss_dssp --CCCCSHHHHHCTTTSCSCEEEESSSTTHHHHHHHHTTCCGGGCCSC-----CHHHHHHHHHHHGGGCSEEECSHHHHH
T ss_pred --CCCCCHHHHhChhhcCCceeccCCchhHHHHHHHhcCCChhhcCHH-----HHHHHHHHHHHHhhhhhhhccCcchHH
Confidence 479999999999 899999999877778888888888876544432 25688999999999987664 35778
Q ss_pred HHhHcCCEEEEEechhcHHHHHHcCCCcEEEccCCCccceeeeEEEeCCCCCcccccCCCCCCChHHHHHHHHHHhhHHh
Q 016927 198 KAFGIGDVWVAVGWSSDVLPAVKRMSNVAVVVPKSGASLWADLWAIPAASRLETKQIGGRVRGPSPLIHQWIEFCLQTAR 277 (380)
Q Consensus 198 ~~~~~Gev~~~~~~s~~~~~~~~~~~~i~~~~P~eG~~~~~d~~~I~k~s~~~~~~~~~~~~~~~~~A~~fi~fllspe~ 277 (380)
+.|.+|+++|++.|++.+...++.+.++++++| |+..+.++++|+++++|++ +|++||+|++|||.
T Consensus 192 ~~~~~Ge~~~~~~~~~~~~~~~~~~~~~~~~~~--g~~~~~~~~~i~k~s~~~~------------~A~~fi~fl~s~e~ 257 (324)
T 4i1d_A 192 QLLNDGEVDMEMAWNGRVSAVAKEGAKVSFTYN--QGILQSTSLCILKGAPNLE------------TAVKFLNEAVDPVH 257 (324)
T ss_dssp HHHHHTSCSEEEEEHHHHHHHHHTTCSEEEEEE--EEEEEEEEEEEBTTCTTHH------------HHHHHHHHHTCHHH
T ss_pred HHHhCCCEEEEecccHHHHHHHhcCCCeEEEec--CeeeeccEEEEECCCCCHH------------HHHHHHHHHhCHHH
Confidence 899999999999999999888888889999885 8899999999999999998 99999999999999
Q ss_pred hchhhhhhcCCCCCCcccccccc--CChhHhcCCCCCCCccccCCCCHHHHhhcccccCCC--HHHHH-HHHHHHHHhc
Q 016927 278 ALPFKQEVIPGASPSALETTLVK--LPEELLKGKPSQDTNLIVGVPPAEILARCEFLEPLS--EATLS-DYEWLVADLQ 351 (380)
Q Consensus 278 ~~~~~~~~~~~~~p~~~~~a~~~--l~~e~~~~~p~~~~~l~~~~p~~~~~~~~~~~~~~~--~~~~~-~~~~~w~~~~ 351 (380)
|..+++. .++.+++ ..+... +|+++++..|. .++.+.+...+ +.. .+.++ ++.+.|+++.
T Consensus 258 q~~~~~~-~~~~p~~--~~a~~~~~~~~~~~~~~~~----------~p~~~~~~~~~-d~~~~~~~~~~~~~~~w~~~~ 322 (324)
T 4i1d_A 258 QANLPLH-IDYGPGN--PKAFETNVIKPERAAQLPS----------EPANAAKQALM-SYAWWSSPAGEAAEKRWASFM 322 (324)
T ss_dssp HHHGGGT-SSCEESS--GGGGGSSCSCHHHHTTSTT----------SHHHHTTSEEC-CHHHHTSHHHHHHHHHHHHHC
T ss_pred HHHHHHh-CCCCCCC--hhhhhhcCCCHHHHhhCCC----------ChHHHhcccCC-CHHHHHhccchHHHHHHHHHH
Confidence 9999875 4554444 344445 89998874321 13334443322 111 13466 7888888765
No 9
>4euo_A ABC transporter, substrate binding protein (polya; class D of PBP, GABA-binding, transport protein; 1.28A {Agrobacterium tumefaciens} PDB: 4eq7_A
Probab=99.98 E-value=4.8e-32 Score=259.93 Aligned_cols=258 Identities=12% Similarity=0.078 Sum_probs=201.5
Q ss_pred CccEEEeCcHHHHHHHHcCcccccccCCCccccCCCChhhHHHHhhhCCCccCCCCCEEEeecccceeEEEEeccccccC
Q 016927 41 AADLVSVGDSWLSFAIKKRLIEPIAGAEDQDWFKCLSHKWKVYLRRNDAGEIDPRGKIWAAPYRWGTMVIAYKKSKFRKH 120 (380)
Q Consensus 41 ~~Dvv~~~~~~~~~~~~~gll~pld~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~Y~vP~~~~~~gi~Yn~d~~~~~ 120 (380)
.+||+.+++.++.+++++|+|+||+... + +++++.+. +- +.|++|+.+++.+|+||+++|++
T Consensus 53 ~~Dv~~~~~~~~~~~~~~g~l~~l~~~~----~-~~~~~~~~---------~~---~~y~~p~~~~~~~l~yn~~~~~~- 114 (320)
T 4euo_A 53 TWDVVDVEGDYAAQAGPKGLLEKLDFSV----I-DKTKLDPR---------FV---TDYSVGSFYYSFVIGCNVDSVSA- 114 (320)
T ss_dssp CCSEEEEEHHHHHHHTTTTCBCCCCTTT----S-CGGGBCGG---------GC---BTTBEEEEEEEEEEEECGGGSSC-
T ss_pred CceEEEcCHHHHHHHHHCCCcccCChhh----C-ChhhCChh---------hc---ccceeeeeeeeEEEEEEhhhhCC-
Confidence 6999999999999999999999998642 3 44444332 11 34999999999999999999987
Q ss_pred CCCCCCCHHHhcCcc-ccCceeeec-ChhHHHHHHHHHcCCCCCCCChhhhhccchHHHHHHHHHHhhhcccccc-hhHH
Q 016927 121 NLAPIEDWKDLWRPE-LAGRISMVN-SPREVIGSVLKYMGASYNSNNIDLQVAGGKISVQQNLALLANQARLFDS-THYL 197 (380)
Q Consensus 121 g~~~p~sW~dL~~~~-~~gki~~~~-~~~~~~~~al~~~G~~~~~~~~~~~~~~~~~~~~~~L~~l~~~v~~~~~-~~~~ 197 (380)
+|+||+||++++ ++|++++.+ .....++.++.+.|.+++..++. ..+++++.|.++++++..+.+ ++..
T Consensus 115 ---~P~tw~dl~~~~~~~g~i~~~~~~~~~~~~~al~~~G~~~~~~~~~-----~~~~a~~~l~~l~~~~~~~~~~~~~~ 186 (320)
T 4euo_A 115 ---CPKSWADLFDTAKFPGKRTFYKWSAPGVIEAALLADGVTADKLYPL-----DLDRAFKKLDTIKSDIIWWSGGAQSQ 186 (320)
T ss_dssp ---CCCSHHHHTCTTTSCSCEEEECSSSTTHHHHHHHHTTCCGGGCCSC-----CHHHHHHHHHTTGGGEEEECSHHHHH
T ss_pred ---CCCCHHHHhChhhCCCcEEEeCCCchHHHHHHHHHcCCChhhcCHH-----HHHHHHHHHHHhhhceeEeCCCchHH
Confidence 899999999984 999999988 66677888888889876554432 256889999999999866644 5788
Q ss_pred HHhHcCCEEEEEechhcHHHHHHcCCCcEEEccCCCccceeeeEEEeCCCCCcccccCCCCCCChHHHHHHHHHHhhHHh
Q 016927 198 KAFGIGDVWVAVGWSSDVLPAVKRMSNVAVVVPKSGASLWADLWAIPAASRLETKQIGGRVRGPSPLIHQWIEFCLQTAR 277 (380)
Q Consensus 198 ~~~~~Gev~~~~~~s~~~~~~~~~~~~i~~~~P~eG~~~~~d~~~I~k~s~~~~~~~~~~~~~~~~~A~~fi~fllspe~ 277 (380)
+.|.+|+++|++.|++.+...++.+.++++++ +|+..|+++++|+++++|++ +|++||+|++|||.
T Consensus 187 ~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~--~g~~~~~~~~~i~k~s~~~e------------~A~~fi~fl~s~e~ 252 (320)
T 4euo_A 187 QLIASAEAPFGSVWNGRMTALEQSGVKVETSW--AQNITAADSLVVPKGTKNKD------------AAMKFIALATSAQA 252 (320)
T ss_dssp HHHHTTSSCEEEEEHHHHHHHHHTTCCCEEEE--EEEEEEEEEEECBTTCSCHH------------HHHHHHHHHTSHHH
T ss_pred HHHHcCCEEEEEeecHHHHHHHhCCCCeEEEe--cCceeecceEEEECCCCCHH------------HHHHHHHHHhCHHH
Confidence 99999999999999999988888888999887 79999999999999999998 99999999999999
Q ss_pred hchhhhhhcCCCCCCccccccccCChhHhcCCCCCC-CccccCCCCHHHHhhcccccCCCHHHHHHHHHHHHHhcCC
Q 016927 278 ALPFKQEVIPGASPSALETTLVKLPEELLKGKPSQD-TNLIVGVPPAEILARCEFLEPLSEATLSDYEWLVADLQKP 353 (380)
Q Consensus 278 ~~~~~~~~~~~~~p~~~~~a~~~l~~e~~~~~p~~~-~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~ 353 (380)
|..+++. .++.+++ ..+...+++++++..|..+ .++ +.++ ..++ .+.++++.+.|++.++.
T Consensus 253 q~~~~~~-~~~~p~~--~~a~~~l~~~~~~~~p~~~~~~~--~~~d------~~~~----~~~~~~~~~r~~~~~~~ 314 (320)
T 4euo_A 253 QADMATA-TGYAPVN--IESAKLMDPKIAKSLPDQQTESQ--VNAD------MNYW----AQHRDEIGERWYAWQAK 314 (320)
T ss_dssp HHHHHHH-HSCBCSB--TTSGGGSCHHHHTTSGGGCCTTE--EECC------HHHH----HHTHHHHHHHHHHHHHC
T ss_pred HHHHHHh-cCCCCCC--HHHHhhCCHHHHhhCCCcchhhc--cCcC------HHHH----HHhHHHHHHHHHHHhhh
Confidence 9999875 4655554 4556678999987543210 000 0111 1122 23467788888777643
No 10
>3pu5_A Extracellular solute-binding protein; structural genomics, PSI-2, protein structure initiative; 2.05A {Bordetella parapertussis}
Probab=99.97 E-value=3.6e-30 Score=247.63 Aligned_cols=288 Identities=17% Similarity=0.205 Sum_probs=208.2
Q ss_pred cCCCceEEEEEEcccHHHHHH-hcccch-------------------hHhhcCCCCCCCccEEEeCcHHHHHHHHcCccc
Q 016927 3 SQGKRLKFQMNLCASIDGIVN-NLSVPF-------------------NKVKAKSAPYMAADLVSVGDSWLSFAIKKRLIE 62 (380)
Q Consensus 3 ~~~~~v~v~~~~~gs~~~~~~-~~~~~~-------------------~kl~ag~~~~~~~Dvv~~~~~~~~~~~~~gll~ 62 (380)
+++..|+| ..|+|+..+.+. .+.+.| +||+++.. ++.+||+.++..++..+++.|+|+
T Consensus 3 a~~~~l~v-~~~~g~~~~~~~~~~~~~F~~~~gi~V~~~~~~~~~~~~kl~~~~~-~~~~Dv~~~~~~~~~~~~~~g~l~ 80 (333)
T 3pu5_A 3 LADDHIYV-TSSGGSFLENVRKHMAEPFEKQSGVKVTLVPGTNPAHALKILSSRG-TPPYDVAAFGGNDMYRLIRAKKLA 80 (333)
T ss_dssp CTTCEEEE-EECCHHHHHHHHHHTHHHHHHHHCCEEEEEECCHHHHHHHHHHCCS-SCSCSEEEECHHHHHHHHHTTCBC
T ss_pred CcCCeEEE-EeCCCcHHHHHHHHHHHHHHHHHCCEEEEecCCCHHHHHHHHhCcC-CCCCCEEEEChHHHHHHHHCcCcc
Confidence 34556666 666666555443 333333 45676432 347999999999999999999999
Q ss_pred ccccCCCccccCCCChhhHHHHhhhCCCccCCCCCEEEeecccceeEEEEeccccccCCCCCCCCHHHhcCccccCce--
Q 016927 63 PIAGAEDQDWFKCLSHKWKVYLRRNDAGEIDPRGKIWAAPYRWGTMVIAYKKSKFRKHNLAPIEDWKDLWRPELAGRI-- 140 (380)
Q Consensus 63 pld~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~Y~vP~~~~~~gi~Yn~d~~~~~g~~~p~sW~dL~~~~~~gki-- 140 (380)
||+.+ .+++++++.+.++.. . +.|++|+.+++.+|+||+++|++ +|+||+||++++++|++
T Consensus 81 ~l~~~----~~~~~~~~~~~~~~~-----~----~~y~vP~~~~~~~l~ynkd~~~~----~P~tw~dl~~~~~~g~~~~ 143 (333)
T 3pu5_A 81 QVDEK----SVPSLADVPEKFKAD-----W----EGCGSLYDYSSVGIAYRPDKIQG----GVKSWKEFVERTVAGEFGK 143 (333)
T ss_dssp CCCTT----TCGGGGGSCGGGTGG-----G----TTSCEECCBEEEEEEECTTTSTT----CCSSHHHHHHHHHHTTTTT
T ss_pred cCChh----hCCChhhCCHHHHhc-----c----CCccceeEeeeeEEEEchhhcCC----CCCCHHHHhChhhCCCccc
Confidence 99964 244555544433221 1 34999999999999999999986 89999999999999999
Q ss_pred --eeecChh-----HHHHHHHHHcCCCCCCCChhhhhccchHHHHHHHHHHhhhcccc-c-chhHHHHhHcCCEEEEEec
Q 016927 141 --SMVNSPR-----EVIGSVLKYMGASYNSNNIDLQVAGGKISVQQNLALLANQARLF-D-STHYLKAFGIGDVWVAVGW 211 (380)
Q Consensus 141 --~~~~~~~-----~~~~~al~~~G~~~~~~~~~~~~~~~~~~~~~~L~~l~~~v~~~-~-~~~~~~~~~~Gev~~~~~~ 211 (380)
++.+... ..+..++...|.+. .+ +.++++.|.++++++..+ . ..+..+.|.+|+++|++.|
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~----~~------~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~G~~~~~~~~ 213 (333)
T 3pu5_A 144 QVFFNNLSSNVRGAEVLSMFGKIYGSGY----GD------IEASIATLERMKPHIFKFFTAFNDPVVLLTSGEGAIGPGW 213 (333)
T ss_dssp CEEEECGGGTSSHHHHHHHHHHHHSSST----TC------HHHHHHHHHHHGGGEEEEECSTTHHHHHHHHTSCSEEEEE
T ss_pred cccccCCcchhhHHHHHHHHHHHcCCCH----HH------HHHHHHHHHHhCcccccccCChHHHHHHHHcCCEEEEecc
Confidence 8876432 12233334556521 11 467889999999988444 3 3467889999999999999
Q ss_pred hhcHHHHHHcCCC-cEEEccCCCccceeeeEEEeCCCCCcccccCCCCCCChHHHHHHHHHHhhHHhhchhhhhhcCCCC
Q 016927 212 SSDVLPAVKRMSN-VAVVVPKSGASLWADLWAIPAASRLETKQIGGRVRGPSPLIHQWIEFCLQTARALPFKQEVIPGAS 290 (380)
Q Consensus 212 s~~~~~~~~~~~~-i~~~~P~eG~~~~~d~~~I~k~s~~~~~~~~~~~~~~~~~A~~fi~fllspe~~~~~~~~~~~~~~ 290 (380)
++.+..+++++.+ +++++|++|+..+.++++|++++ |++ +|++||+|++|+|.|..+++. .++.+
T Consensus 214 ~~~~~~~~~~g~~~~~~~~P~~g~~~~~~~~~i~k~s-~~~------------~A~~Fi~~l~s~e~q~~~~~~-~g~~P 279 (333)
T 3pu5_A 214 DGRTFIAEDSTKGMVKWVDPTEGAVSSGPVMAVVKGG-KED------------LAKAFMNYALGEEAQKAFCEA-MYYGA 279 (333)
T ss_dssp HHHHHHHHHHTTTSSEEECCTTCCEEECCEEEEBTTS-CHH------------HHHHHHHHHTSHHHHHHHHHH-HTCBC
T ss_pred cHHHHHHHhCCCCceeEEcCCCceeeccceEEEeCCC-CHH------------HHHHHHHHHcCHHHHHHHHHh-cCCCC
Confidence 9998888777777 99999999999999999999999 998 999999999999999999875 45433
Q ss_pred CCccccccccCChhHhcCCCCCCCccccCCCCHHHHhhcccccCCC--HHHHHHHHHHHHHhcC
Q 016927 291 PSALETTLVKLPEELLKGKPSQDTNLIVGVPPAEILARCEFLEPLS--EATLSDYEWLVADLQK 352 (380)
Q Consensus 291 p~~~~~a~~~l~~e~~~~~p~~~~~l~~~~p~~~~~~~~~~~~~~~--~~~~~~~~~~w~~~~~ 352 (380)
++ ....+++++++..|. +++.... +.. .+.++.+.+.|++...
T Consensus 280 ~~----~~~~~~~~~~~~~p~--------------~~~~~~~-d~~~~~~~~~~~~~~w~~~~~ 324 (333)
T 3pu5_A 280 VN----RKVQYSEKLKHRLPS--------------IDSVQLV-DTALLIKNMSALLDLWNKRIA 324 (333)
T ss_dssp SC----TTCCCCTTTTTTSCC--------------TTTCBCC-CHHHHHHHHHHHHHHHHHHTC
T ss_pred CC----CCcCCCHHHHhcCcc--------------Hhhcccc-CHHHHHHHHHHHHHHHHHHhh
Confidence 33 223478888765432 1122211 111 2467788889987763
No 11
>3rpw_A ABC transporter; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; HET: MSE; 1.65A {Rhodopseudomonas palustris}
Probab=99.97 E-value=4.2e-30 Score=250.40 Aligned_cols=233 Identities=14% Similarity=0.139 Sum_probs=186.6
Q ss_pred CccEEEeCcHHHHHHHHcCcccccccCCCccccCCCChhhHHHHhhhCCCccCCCCCEEEeecccceeEEEEeccccccC
Q 016927 41 AADLVSVGDSWLSFAIKKRLIEPIAGAEDQDWFKCLSHKWKVYLRRNDAGEIDPRGKIWAAPYRWGTMVIAYKKSKFRKH 120 (380)
Q Consensus 41 ~~Dvv~~~~~~~~~~~~~gll~pld~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~Y~vP~~~~~~gi~Yn~d~~~~~ 120 (380)
.+||+.++..++.++++ |+|+||+.. .+ +.+. ..++..+ ...+ |+.|++|+.+++.+|+||+++|++.
T Consensus 86 ~~Dv~~~~~~~~~~~~~-g~l~~l~~~----~~-~~~~--~~~~~~~-~~~~---~~~y~~p~~~~~~~l~ynk~~~~~~ 153 (365)
T 3rpw_A 86 QWDLTFIFDQETKLLGD-CCLADIDYS----KL-SESA--HKTLAAM-PDNL---KRKKGVALQVIGVGLVYNKDKFKGD 153 (365)
T ss_dssp CCSBEEECHHHHHHTHH-HHBCCCCGG----GS-CHHH--HHHHHTS-CGGG---EETTEEEEEEEEEEEEEETTTSCTT
T ss_pred CceEEEcCHHHHHHHhC-CCcccCChh----hc-Cchh--hhhhhhc-Cccc---cCCeEEeeeeeeEEEEEEhhhcCCC
Confidence 69999999999999999 999999864 22 2221 0011110 0122 5679999999999999999999862
Q ss_pred CCCCCCCHHHhcCc-cccCceeeecChhHHHHHHHHHcCCCCCCCChhhhhccchHHHHHHHHHHhhhccccc--chhHH
Q 016927 121 NLAPIEDWKDLWRP-ELAGRISMVNSPREVIGSVLKYMGASYNSNNIDLQVAGGKISVQQNLALLANQARLFD--STHYL 197 (380)
Q Consensus 121 g~~~p~sW~dL~~~-~~~gki~~~~~~~~~~~~al~~~G~~~~~~~~~~~~~~~~~~~~~~L~~l~~~v~~~~--~~~~~ 197 (380)
++|+||+||+++ +++|++++.+.+...++.++.+.|.+++..+.. +.+++++.|.++++++..++ .++..
T Consensus 154 --~~P~tw~dl~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-----~~~~a~~~l~~l~~~~~~~~~~~~~~~ 226 (365)
T 3rpw_A 154 --KAPQTWADFWDVKKFPGRRCMPAWPRFTFEAALMADGVTKDKLYPI-----DMDRALKKLKEIKPHVVKWWTTAAQPP 226 (365)
T ss_dssp --SSCCSHHHHHCTTTSCSCEEEESSSTTHHHHHHHHTTCCTTSCCSC-----CHHHHHHHHHHHGGGEEEEECSTTHHH
T ss_pred --CCCCCHHHHhChhhCCCceeCCcCchHHHHHHHHHcCCChhhcCch-----hHHHHHHHHHHHhhhcccccCCccHHH
Confidence 489999999999 899999999877778888888889877654432 25688999999999986663 45788
Q ss_pred HHhHcCCEEEEEechhcHHHHHHcCCCcEEEccCCCccceeeeEEEeCCCCCcccccCCCCCCChHHHHHHHHHHhhHHh
Q 016927 198 KAFGIGDVWVAVGWSSDVLPAVKRMSNVAVVVPKSGASLWADLWAIPAASRLETKQIGGRVRGPSPLIHQWIEFCLQTAR 277 (380)
Q Consensus 198 ~~~~~Gev~~~~~~s~~~~~~~~~~~~i~~~~P~eG~~~~~d~~~I~k~s~~~~~~~~~~~~~~~~~A~~fi~fllspe~ 277 (380)
+.|.+|+++|++.|++.+...++++.++++++| |+..+.++++|+++++|++ +|++||+|+++||.
T Consensus 227 ~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~p--g~~~~~~~~~i~k~s~~~~------------~A~~fi~~l~s~e~ 292 (365)
T 3rpw_A 227 QLILDGEADMCLAYTGSMSKLALEGAPIDLTFN--QGFVYYDFFSIPKGAPNYD------------NALKLLSWRLDPKR 292 (365)
T ss_dssp HHHHTTSCSEEEEEHHHHHHHHHHTCSEEEEEE--EEEEEEEEEECBTTCTTHH------------HHHHHHHHHTCHHH
T ss_pred HHHHcCCeEEEEehhHHHHHHHhCCCCeEEeeC--CeeeeceEEEEECCCCCHH------------HHHHHHHHHcCHHH
Confidence 999999999999999999888888899999887 8889999999999999998 99999999999999
Q ss_pred hchhhhhhcCCCCCCcccccccc-CChhHhcCC
Q 016927 278 ALPFKQEVIPGASPSALETTLVK-LPEELLKGK 309 (380)
Q Consensus 278 ~~~~~~~~~~~~~p~~~~~a~~~-l~~e~~~~~ 309 (380)
|..+++. .++.+++ ..+... +++++++..
T Consensus 293 q~~~~~~-~~~~P~~--~~a~~~~l~~~~~~~~ 322 (365)
T 3rpw_A 293 AAQLTST-FPVALPS--KVVFDAATDKNIARYW 322 (365)
T ss_dssp HHHHHHH-SCCBCSC--HHHHHHCSCGGGGGGS
T ss_pred HHHHHHh-cCCCCCC--hhHHhcCCCHHHHhhC
Confidence 9999975 4554443 233344 788887654
No 12
>4edp_A ABC transporter, substrate-binding protein; clostridium PERF ATCC 13124, center for structural genomics of infectious DI csgid; 1.85A {Clostridium perfringens}
Probab=99.95 E-value=4e-28 Score=233.58 Aligned_cols=265 Identities=17% Similarity=0.240 Sum_probs=196.1
Q ss_pred hHhhcCCCCCCCccEEEeCcHHHHHHHHcCcccccccCCCccccCCCChhhHHHHhhhCCCccCCCCCEEEeecccceeE
Q 016927 30 NKVKAKSAPYMAADLVSVGDSWLSFAIKKRLIEPIAGAEDQDWFKCLSHKWKVYLRRNDAGEIDPRGKIWAAPYRWGTMV 109 (380)
Q Consensus 30 ~kl~ag~~~~~~~Dvv~~~~~~~~~~~~~gll~pld~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~Y~vP~~~~~~g 109 (380)
+||++++. ..|||+.++..++..+++.|+++||+.. .+++++++.+.+. +.+|+.|++|+..++.+
T Consensus 77 ~kl~a~~~--~~pDv~~~~~~~~~~~~~~g~l~~l~~~----~~~~~~~~~~~~~--------~~~g~~y~~P~~~~~~~ 142 (351)
T 4edp_A 77 TKMKNNPN--SQIDITYLAESFAEQGVEAGIFDKLDYS----KIPNASEMNEKAK--------STVEAGYGPAYTLNSIG 142 (351)
T ss_dssp HHHHHCTT--CCCCEEEEEHHHHHHHHHHTCBCCCCGG----GCGGGGGBCTTTH--------HHHHHTSSCEEEEEEEE
T ss_pred HHHHhcCC--CCCCEEEECcHHHHHHHHCCCcccCCch----hCCChHHhhHHhh--------ccCCCeeEEEEEeeEEE
Confidence 34666553 3799999999999999999999999864 2344444443322 12378899999999999
Q ss_pred EEEeccccccCCCCCCCCHHHhcCccccCceeeecChh----HHHHHHHHHcCCCCCCCChhhhhccchHHHHHHHHHHh
Q 016927 110 IAYKKSKFRKHNLAPIEDWKDLWRPELAGRISMVNSPR----EVIGSVLKYMGASYNSNNIDLQVAGGKISVQQNLALLA 185 (380)
Q Consensus 110 i~Yn~d~~~~~g~~~p~sW~dL~~~~~~gki~~~~~~~----~~~~~al~~~G~~~~~~~~~~~~~~~~~~~~~~L~~l~ 185 (380)
++||+++ + ++|+||+||++++++|++.+.+... ..+..++...|.++++. ...++.+.+.++.
T Consensus 143 l~ynkd~-~----~~p~tw~el~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~G~~~~~~--------~~~~~~~~~~~l~ 209 (351)
T 4edp_A 143 IVVDPSA-G----IEINSWEDLWKPELKNKIAIPDITTTNGPAMVEIAAEKAGVDVKTD--------NGEAAFKELEALK 209 (351)
T ss_dssp EEECGGG-C----CCCCSGGGGGCGGGTTCEEEECTTSTTHHHHHHHHHHHHTCCHHHH--------TTHHHHHHHHHHG
T ss_pred EEEcCCC-C----CCCCCHHHHhChHhcCCeeecCcccccchHHHHHHHHhcCCCCChh--------hHHHHHHHHHHHH
Confidence 9999999 4 3899999999999999998876322 12233334557654321 1457888999998
Q ss_pred hhcccc--cchhHHHHhHcCCEEEEEechhcHHHHHHcCCCcEEEccCCCccceeeeEEEeCCCCCcccccCCCCCCChH
Q 016927 186 NQARLF--DSTHYLKAFGIGDVWVAVGWSSDVLPAVKRMSNVAVVVPKSGASLWADLWAIPAASRLETKQIGGRVRGPSP 263 (380)
Q Consensus 186 ~~v~~~--~~~~~~~~~~~Gev~~~~~~s~~~~~~~~~~~~i~~~~P~eG~~~~~d~~~I~k~s~~~~~~~~~~~~~~~~ 263 (380)
++...+ ...+..+.|.+|+++|++.|++.+..+.+.++++.+++|++|+..+.++++|+++++|++
T Consensus 210 ~~~~~~~~~~~~~~~~f~~G~~a~~~~~~~~~~~~~~~~~~~~~~~P~~g~~~~~~~~~i~~~s~~~~------------ 277 (351)
T 4edp_A 210 PNVVKTYSKSSDLANMFSNGEIVAAVASDFAFGTISKAKPEVINVIPESGTYLNFNTININKNSKNKD------------ 277 (351)
T ss_dssp GGEEEEECCHHHHHHHHHTTSCSEEEEEHHHHHHHHHHCTTCEEECCTTCCBEEEEEEEEBTTCSCHH------------
T ss_pred HhhhcccCChHHHHHHHHcCCEEEEecCcHHHHHHHhcCCCeeeeCCCCCcccceeeEEEECCCCCHH------------
Confidence 877644 245778899999999999999998888888999999999999999999999999999998
Q ss_pred HHHHHHHHHhhHHhhchhhhhhcCCCCCCccccccccCChhHhcCCCCCCCccccCCCCHHHHhhcccccCCC--HHHHH
Q 016927 264 LIHQWIEFCLQTARALPFKQEVIPGASPSALETTLVKLPEELLKGKPSQDTNLIVGVPPAEILARCEFLEPLS--EATLS 341 (380)
Q Consensus 264 ~A~~fi~fllspe~~~~~~~~~~~~~~p~~~~~a~~~l~~e~~~~~p~~~~~l~~~~p~~~~~~~~~~~~~~~--~~~~~ 341 (380)
+|++||+|++++|.|..+++. .++ .|. .....+++++++.+| ++ +.+++.... +.. .+.++
T Consensus 278 ~A~~fi~~l~s~e~q~~~~~~-~g~-~P~---~~~~~~~~~~~~~~~---------~~--~~~~~~~~~-d~~~~~~~~~ 340 (351)
T 4edp_A 278 LAYEFINYALSKEVQEKTAKA-LNE-SPV---NKEVKLSEEETKNLT---------YG--PVVDNAKVI-DFKFVNSVMD 340 (351)
T ss_dssp HHHHHHHHHTSHHHHHHHHHH-HCC-BCC---BTTCCCCTTTTTTSC---------CS--HHHHTCBCC-CHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHh-cCC-CCC---cCCccCCHHHHhccC---------Cc--hhhhhccCC-CHHHHhhhHH
Confidence 999999999999999999875 343 453 223357888776432 22 234444322 111 24566
Q ss_pred HHHHHHHHh
Q 016927 342 DYEWLVADL 350 (380)
Q Consensus 342 ~~~~~w~~~ 350 (380)
.+.+.|+++
T Consensus 341 ~~~~~w~~~ 349 (351)
T 4edp_A 341 QWVNNWNRI 349 (351)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhh
Confidence 777777765
No 13
>2qry_A Thiamine-binding periplasmic protein; thiamin binding protein, ABC transporter, transport protein; HET: TPS; 2.25A {Escherichia coli}
Probab=99.93 E-value=8.1e-25 Score=210.59 Aligned_cols=240 Identities=18% Similarity=0.185 Sum_probs=171.8
Q ss_pred ceEEEEEEcccHHHHHHhcccchhHhhcCCCCCCCccEEE-eCcHHHHHHHHcCccccc--ccCCCccccCCCChhhHHH
Q 016927 7 RLKFQMNLCASIDGIVNNLSVPFNKVKAKSAPYMAADLVS-VGDSWLSFAIKKRLIEPI--AGAEDQDWFKCLSHKWKVY 83 (380)
Q Consensus 7 ~v~v~~~~~gs~~~~~~~~~~~~~kl~ag~~~~~~~Dvv~-~~~~~~~~~~~~gll~pl--d~~~~~~~~~~~~~~~~~~ 83 (380)
+|+|+.+..++.++++++ |+++.. +..|||+. .+..++..+++.|+|+|| +.. .++ +.
T Consensus 52 gi~V~~~~~~~~~~~~~k-------l~~~~~-~~~pDv~~~~~~~~~~~~~~~g~l~~l~~~~~----~~~-~~------ 112 (330)
T 2qry_A 52 NCELKLVALEDGVSLLNR-------LRMEGK-NSKADVVLGLDNNLLDAASKTGLFAKSGVAAD----AVN-VP------ 112 (330)
T ss_dssp CSEEEEEECSCHHHHHHH-------HHHHGG-GCCCSEEEEEEGGGHHHHHHHTCBCCCCCCGG----GCC-CT------
T ss_pred CCEEEEEeCCCHHHHHHH-------HHhccC-CCCCCEEEEcChHHHHHHHHCCceeccccccc----ccc-CC------
Confidence 688888877766677655 444322 13699999 556799999999999999 432 222 21
Q ss_pred HhhhCCCccCCCCCEEEeecccceeEEEEeccccccCCCCCCCCHHHhcCccccCceeeecChhHHHHHHHHHcCCCCCC
Q 016927 84 LRRNDAGEIDPRGKIWAAPYRWGTMVIAYKKSKFRKHNLAPIEDWKDLWRPELAGRISMVNSPREVIGSVLKYMGASYNS 163 (380)
Q Consensus 84 ~~~~~~~~~d~~g~~Y~vP~~~~~~gi~Yn~d~~~~~g~~~p~sW~dL~~~~~~gki~~~~~~~~~~~~al~~~G~~~~~ 163 (380)
..+. +.|++|+.+++.+|+||+++|++ +|+||+||++++++|++++.+.....++..+...+....
T Consensus 113 ------~~~~---~~y~vP~~~~~~~l~YNkd~~~~----~P~Tw~dl~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~- 178 (330)
T 2qry_A 113 ------GGWN---NDTFVPFDYGYFAFVYDKNKLKN----PPQSLKELVESDQNWRVIYQDPRTSTPGLGLLLWMQKVY- 178 (330)
T ss_dssp ------TCCC---CSSCEEEEEEEEEEEEETTTCSS----CCSSHHHHHHCSSCCCEEEECTTTCHHHHHHHHHHHHHH-
T ss_pred ------HHHh---cCeEEEEeccceEEEEehhhccC----CCCCHHHHHhHHhcCeeEeeCCCCCchHHHHHHHHHHhh-
Confidence 1232 24999999999999999999986 899999999999999999876433333322222211100
Q ss_pred CChhhhhccchHHHHHHHHHHhhhccccc--chhHHHHhHcCCEEEEEechhcHH-HHH-HcCCCcEEEccCCCccceee
Q 016927 164 NNIDLQVAGGKISVQQNLALLANQARLFD--STHYLKAFGIGDVWVAVGWSSDVL-PAV-KRMSNVAVVVPKSGASLWAD 239 (380)
Q Consensus 164 ~~~~~~~~~~~~~~~~~L~~l~~~v~~~~--~~~~~~~~~~Gev~~~~~~s~~~~-~~~-~~~~~i~~~~P~eG~~~~~d 239 (380)
. +++.+.+.+++++...+. .++..+.|.+|+++|++.|++... ... ..+.++++++|++|...+.+
T Consensus 179 --g--------~~a~~~~~~l~~~~~~~~~~~~~~~~~f~~G~~a~~~~~~~~~~~~~~~~~~~~~~~~~p~~g~~~~~~ 248 (330)
T 2qry_A 179 --G--------DDAPQAWQKLAKKTVTVTKGWSEAYGLFLKGESDLVLSYTTSPAYHILEEKKDNYAAANFSEGHYLQVE 248 (330)
T ss_dssp --G--------GGHHHHHHHHHTTEEEEESSHHHHHHHHHTTSCSEEEEETTHHHHHHHHHCCCCEEECCCTTCEEEEEE
T ss_pred --C--------hHHHHHHHHHHhcCceeccChHHHHHHHhCCCEEEEEecccHHHHHhhhccCCceeEEeCCCCCeeeee
Confidence 0 135677777877665442 346678999999999999988753 333 34568888889889888999
Q ss_pred eEEEeCCCCCcccccCCCCCCChHHHHHHHHHHhhHHhhchhhhhhcCCCCCCccccccccCChhHhc
Q 016927 240 LWAIPAASRLETKQIGGRVRGPSPLIHQWIEFCLQTARALPFKQEVIPGASPSALETTLVKLPEELLK 307 (380)
Q Consensus 240 ~~~I~k~s~~~~~~~~~~~~~~~~~A~~fi~fllspe~~~~~~~~~~~~~~p~~~~~a~~~l~~e~~~ 307 (380)
+++|+++++|++ +|++||+|++++|.|..+++. .+ ..|+ ....+|++++.
T Consensus 249 ~~~i~~~s~~~~------------~A~~fi~fl~s~e~q~~~~~~-~g-~~P~----~~v~~~~~~~~ 298 (330)
T 2qry_A 249 VAARTAASKQPE------------LAQKFLQFMVSPAFQNAIPTG-NW-MYPV----ANVTLPAGFEK 298 (330)
T ss_dssp EEEEBTTCSCHH------------HHHHHHHHHTSHHHHTTHHHH-TC-SEES----SCCCCCTTGGG
T ss_pred EEEEECCCCCHH------------HHHHHHHHHcCHHHHHHHHhh-cc-cccc----CCCCCChhhhh
Confidence 999999999998 999999999999999998864 23 2343 12356666543
No 14
>3quf_A Extracellular solute-binding protein, family 1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 1.70A {Bifidobacterium longum subsp}
Probab=99.91 E-value=1.3e-24 Score=214.83 Aligned_cols=255 Identities=11% Similarity=0.105 Sum_probs=171.7
Q ss_pred CCceEEEEEEcccHHHHHHhcccchhHhhcCCCCCCCccEEEeCcHHHHHHHHcCcccccccCCCccccCCCChhhHHHH
Q 016927 5 GKRLKFQMNLCASIDGIVNNLSVPFNKVKAKSAPYMAADLVSVGDSWLSFAIKKRLIEPIAGAEDQDWFKCLSHKWKVYL 84 (380)
Q Consensus 5 ~~~v~v~~~~~gs~~~~~~~~~~~~~kl~ag~~~~~~~Dvv~~~~~~~~~~~~~gll~pld~~~~~~~~~~~~~~~~~~~ 84 (380)
.++|+|++++.++.++..+++. +.+.+|. .|||+.++..++..+++.|+|+||+.. ....++.+ ..+
T Consensus 54 ~p~i~V~~~~~~~~~~~~~kl~---~~~~sg~----~pDv~~~~~~~~~~~~~~g~l~~L~~~---~~~~~~~~---~~~ 120 (414)
T 3quf_A 54 NPDITLDVQYGQDPAQYISTLQ---TRLAGGK----PPTIFNLTMDNRTDVMKSGAALDISGE---DFLDGIDD---TNF 120 (414)
T ss_dssp CTTEEEEEEECSSHHHHHHHHH---HHHHSSS----CCSEEEECTTTHHHHHHHTCBCCCTTC---GGGTTBCG---GGG
T ss_pred CcCeEEEEEeCCChHHHHHHHH---HHHhCCC----CCCEEEECCcchHHHHhCCeeecCCcc---hhhhhcCH---HHH
Confidence 3478888888777777777742 2233343 599999999999999999999999863 12333332 222
Q ss_pred hhhCCCccCCCCCEEEeecccceeEEEEeccccccCCCC-CCCCHHHhcCc--cc--cCceeeecC----hhHHHHHHHH
Q 016927 85 RRNDAGEIDPRGKIWAAPYRWGTMVIAYKKSKFRKHNLA-PIEDWKDLWRP--EL--AGRISMVNS----PREVIGSVLK 155 (380)
Q Consensus 85 ~~~~~~~~d~~g~~Y~vP~~~~~~gi~Yn~d~~~~~g~~-~p~sW~dL~~~--~~--~gki~~~~~----~~~~~~~al~ 155 (380)
+. ..+ +|+.||+|+..++.+|+||+|+|+++|++ +|+||++|++. ++ +|...+... ....+...+.
T Consensus 121 ~~---~~~--dG~~y~vP~~~~~~~l~ynkdl~~~~G~~~~P~Twdel~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~ 195 (414)
T 3quf_A 121 AL---FQQ--DGKTYGMPVSAWVGAFFYNKDILKKAGYDKFPKTWDEFIEMGKKINSNGSTAFLEDFNTQIAGSFTGLLA 195 (414)
T ss_dssp GG---GEE--TTEECCBCCEEEEEEEEEEHHHHHHTTCSSCCSBHHHHHHHHHHHHHTTSEEECCCCSSSSCHHHHHHHH
T ss_pred hh---ccc--CCeEEEeccccceeEEEEeHHHHHhcCCCCCCCCHHHHHHHHHHHHHcCCCCeeccccccchHHHHHHHH
Confidence 21 123 59999999999999999999999999998 99999999975 23 355544322 1222322222
Q ss_pred HcCCCCCC----C----ChhhhhccchHHHHHHHHHHhhh--c----ccccchhHHHHhHcCCEEEEEechhcHHHHHHc
Q 016927 156 YMGASYNS----N----NIDLQVAGGKISVQQNLALLANQ--A----RLFDSTHYLKAFGIGDVWVAVGWSSDVLPAVKR 221 (380)
Q Consensus 156 ~~G~~~~~----~----~~~~~~~~~~~~~~~~L~~l~~~--v----~~~~~~~~~~~~~~Gev~~~~~~s~~~~~~~~~ 221 (380)
..|..... . +....+.....++.+.+.+|... + ..++.++..+.|.+|+++|.+.++.....+.+.
T Consensus 196 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~al~~~~~l~~~g~~~~~~~~~~~~~~~~~f~~G~~a~~~~~~~~~~~~~~~ 275 (414)
T 3quf_A 196 SYYGEQGKSGDLDADIWSGKSTFTKDWTPVFKRWEAAAKAGVIPQKSVGLSADQVKQEFVSGNLGVMRSGPWDLPDLQKS 275 (414)
T ss_dssp HHHHTTTCCSSTTHHHHTTSSCHHHHTHHHHHHHHHHHHTTSSCGGGTTCCHHHHHHHHHTTCEEEEEECGGGHHHHHHS
T ss_pred HhhccccCchhHHHHHhcCCcccChHHHHHHHHHHHHHhCCCCCCCccCCCHHHHHHHHHcCCceEEEcCcccHHHHhhh
Confidence 22211110 0 11111111234566666666431 1 123345678899999999999999888777777
Q ss_pred CCCcEEE-ccC--CC-----ccceeeeEEEeCCCC--CcccccCCCCCCChHHHHHHHHHHhhHHhhchhhhhhcCCCC
Q 016927 222 MSNVAVV-VPK--SG-----ASLWADLWAIPAASR--LETKQIGGRVRGPSPLIHQWIEFCLQTARALPFKQEVIPGAS 290 (380)
Q Consensus 222 ~~~i~~~-~P~--eG-----~~~~~d~~~I~k~s~--~~~~~~~~~~~~~~~~A~~fi~fllspe~~~~~~~~~~~~~~ 290 (380)
+.+++++ +|. +| ...+..+++|+++++ |++ +|++||+|++++|.|..+++. .++.+
T Consensus 276 ~~~~~~~~~P~~~~~~~~~~~~~~~~~~~I~~~s~~~~~e------------~A~~fl~~l~s~e~~~~~~~~-~g~~P 341 (414)
T 3quf_A 276 DIDFGVAPFPAYSKEDGQWINGGPDQGFAIASRASDKEKA------------AAKKFLAYLNSEEGLEAFTSA-AGTLS 341 (414)
T ss_dssp SCCEEEECBCBSSCTTCCBEEEEESCEEEEBSSSCHHHHH------------HHHHHHHHHTSHHHHHHHHHH-HTCEE
T ss_pred ccceeEEecCCcCCCCccceecccCccEEEECCCCccCHH------------HHHHHHHHHcCHHHHHHHHHh-cCCCC
Confidence 7888886 674 33 123445799999999 988 999999999999999999875 34433
No 15
>3k01_A Acarbose/maltose binding protein GACH; ABC transporter, acarbose-binding protein, transport protein; 1.35A {Streptomyces glaucescens} PDB: 3jzj_A* 3k00_A* 3k02_A*
Probab=99.91 E-value=4.2e-24 Score=211.29 Aligned_cols=324 Identities=12% Similarity=0.102 Sum_probs=201.6
Q ss_pred CceEEEEEEcccHHHHHHhcccchhHhhcCCCCCCCccEEEeCcHHHHHHHHcCcccccccCCCccccCCCChhhHHHHh
Q 016927 6 KRLKFQMNLCASIDGIVNNLSVPFNKVKAKSAPYMAADLVSVGDSWLSFAIKKRLIEPIAGAEDQDWFKCLSHKWKVYLR 85 (380)
Q Consensus 6 ~~v~v~~~~~gs~~~~~~~~~~~~~kl~ag~~~~~~~Dvv~~~~~~~~~~~~~gll~pld~~~~~~~~~~~~~~~~~~~~ 85 (380)
.+|+|+.+.. +.++..+++. +.+.+|.. .|||+.++..++..+++.|+|+||+... ...+.+++.+.+++
T Consensus 56 pgi~V~~~~~-~~~~~~~kl~---~~~~sg~~---~pDv~~~~~~~~~~~~~~g~l~~L~~~~---~~~~~~~~~~~~~~ 125 (412)
T 3k01_A 56 PKVDVKYVNV-PFGEANAKFK---NAAGGNSG---APDVMRTEVAWVADFASIGYLAPLDGTP---ALDDGSDHLPQAAA 125 (412)
T ss_dssp TTEEEEEEEC-CHHHHHHHHH---HHHHTTSS---CCSEEEEEHHHHHHHHHTTCBCCCTTSG---GGCSCTTBCHHHHH
T ss_pred cCeEEEEEec-ChHHHHHHHH---HHHhcCCC---CCCEEEecCccHHHHHhcCCcccCchhc---cccchhhcCHHHHH
Confidence 4677777766 3455555532 22334432 4999999888999999999999999741 23456666666654
Q ss_pred hhCCCccCCCCCEEEeecccceeEEEEeccccccCCCCCCCCHHHhcCc--ccc---Cceeee--cChhHHHHHHHHHcC
Q 016927 86 RNDAGEIDPRGKIWAAPYRWGTMVIAYKKSKFRKHNLAPIEDWKDLWRP--ELA---GRISMV--NSPREVIGSVLKYMG 158 (380)
Q Consensus 86 ~~~~~~~d~~g~~Y~vP~~~~~~gi~Yn~d~~~~~g~~~p~sW~dL~~~--~~~---gki~~~--~~~~~~~~~al~~~G 158 (380)
. ..+ +|+.|++|+..++.+|+||+|+|+++|+++|+||+||++. +++ |...+. ......+...+...|
T Consensus 126 ~---~~~--dG~~y~vP~~~~~~~l~ynkdl~~~~Gl~~P~Twdel~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~g 200 (412)
T 3k01_A 126 S---TRY--EGKTYAVPQVIDTLALFYNKELLTKAGVEVPGSVAELKTAAAEITEKTGATGLYLRGDDPYWFLPYLYGEG 200 (412)
T ss_dssp T---TEE--TTEECCEEEEEEECEEEEEHHHHHHHTCCCCSBHHHHHHHHHHHHHHHSCEEEECCCSCGGGGHHHHHHTT
T ss_pred h---ccc--CCcEEEeeeecceeEEEEEHHHHHHcCCCCCCCHHHHHHHHHHHhcccCCCceeeCCcchHHHHHHHHHcC
Confidence 2 234 4999999999999999999999999999999999999984 332 555422 112223334456677
Q ss_pred CCCCCCChh-hhhc-cchHHHHHHHHHHhhh--ccc---ccchhHHHHhHcCCEEEEEechhcHHHHHHcC-----CCcE
Q 016927 159 ASYNSNNID-LQVA-GGKISVQQNLALLANQ--ARL---FDSTHYLKAFGIGDVWVAVGWSSDVLPAVKRM-----SNVA 226 (380)
Q Consensus 159 ~~~~~~~~~-~~~~-~~~~~~~~~L~~l~~~--v~~---~~~~~~~~~~~~Gev~~~~~~s~~~~~~~~~~-----~~i~ 226 (380)
.++.+.+.. ..+. ....++.+.+.++... +.. ...++..+.|.+|+++|.+.++.....+.... .+++
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~al~~~~~l~~~g~~~~~~~~~~~~~~~~f~~G~~a~~~~g~w~~~~~~~~~~~~~~~~~~ 280 (412)
T 3k01_A 201 GDLVDEKNKTVTVDDEAGVRAYRVIKDLVDSKAAITDASDGWNNMQNAFKSGKVAMMVNGPWAIEDVKAGARFKDAGNLG 280 (412)
T ss_dssp CCSEETTTTEECTTSHHHHHHHHHHHHHHHTTSEECCSSCHHHHHHHHHHHTSEEEEEECGGGHHHHHTSTTCSSGGGEE
T ss_pred CceECCCCCeeccCCHHHHHHHHHHHHHHHcCCCCCCcccchhhHHHHHhcCCEEEEECCccchHhhhhccccCccceeE
Confidence 765332211 1111 1245666777666542 111 22346778999999999999777666555432 2477
Q ss_pred EE-ccCC--C--ccceeeeEEEeCCCCCcccccCCCCCCChHHHHHHHHHHhhHHhhchhhhhhcCCCCCCccccccccC
Q 016927 227 VV-VPKS--G--ASLWADLWAIPAASRLETKQIGGRVRGPSPLIHQWIEFCLQTARALPFKQEVIPGASPSALETTLVKL 301 (380)
Q Consensus 227 ~~-~P~e--G--~~~~~d~~~I~k~s~~~~~~~~~~~~~~~~~A~~fi~fllspe~~~~~~~~~~~~~~p~~~~~a~~~l 301 (380)
++ +|.. | ...+.++++|+++++|++ +|++||+|++++|.|..+++. .++ .|.. ..+ .
T Consensus 281 ~~~~P~~~~~~~~~~~~~~~~I~~~s~~~e------------~A~~fl~~l~s~e~q~~~~~~-~g~-~P~~-~~~--~- 342 (412)
T 3k01_A 281 VAPVPAGSAGQGSPQGGWNLSVYAGSKNLD------------ASYAFVKYMSSAKVQQQTTEK-LSL-LPTR-TSV--Y- 342 (412)
T ss_dssp EEECCBCSSCCCEEEEEEEEEEBTTCSCHH------------HHHHHHHHHHSHHHHHHHHHH-HCC-CBSB-GGG--G-
T ss_pred EEeCCCCCCCCccccCceeEEEeCCCCCHH------------HHHHHHHHHcCHHHHHHHHHh-cCC-CCcc-hhh--c-
Confidence 65 5642 2 456678899999999998 999999999999999998875 343 4532 111 1
Q ss_pred ChhHhcCCCCCCCccccCCCCHHHHhhcccccCC--CHHHHHHHHHHHHHhcCC---CcchHHHHHHHHHHHH
Q 016927 302 PEELLKGKPSQDTNLIVGVPPAEILARCEFLEPL--SEATLSDYEWLVADLQKP---APVLMKRVQHYLSSLI 369 (380)
Q Consensus 302 ~~e~~~~~p~~~~~l~~~~p~~~~~~~~~~~~~~--~~~~~~~~~~~w~~~~~~---~~~~~~~~~~~~~~~~ 369 (380)
++++..++ .+..++ .+.+......+.. ..+..+.+.+.++++..- .+.-+++.|+....++
T Consensus 343 ~~~~~~~~-----~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~al~~~~~~~~~~l 408 (412)
T 3k01_A 343 EVPSVADN-----EMVKFF--KPAVDKAVERPWIAEGNALFEPIRLQMANVLSGETSPDEAAANTGDAYRKLL 408 (412)
T ss_dssp GSHHHHTC-----HHHHHH--HHHHTTEECCCCSTTGGGGHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHS
T ss_pred ChhhhhCc-----hhHHHH--HHHHHhcccCCCCCchHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 44554432 110001 2333333333222 234556666666666532 2334444444444443
No 16
>3uor_A ABC transporter sugar binding protein; ALFA/beta protein, periplasmic-binding protein, maltose, SUG binding protein; 2.20A {Xanthomonas axonopodis PV}
Probab=99.91 E-value=1.5e-23 Score=210.84 Aligned_cols=328 Identities=12% Similarity=0.110 Sum_probs=203.5
Q ss_pred CCceEEEEEEcccHHHHHHhcccchhHhhcCCCCCCCccEEEeCcHHHHHHHHcCcccccccCCCccccCCCChhhHHHH
Q 016927 5 GKRLKFQMNLCASIDGIVNNLSVPFNKVKAKSAPYMAADLVSVGDSWLSFAIKKRLIEPIAGAEDQDWFKCLSHKWKVYL 84 (380)
Q Consensus 5 ~~~v~v~~~~~gs~~~~~~~~~~~~~kl~ag~~~~~~~Dvv~~~~~~~~~~~~~gll~pld~~~~~~~~~~~~~~~~~~~ 84 (380)
.++|+|+++..+ .++..+++. +.+.+|. .|||+.++..++..+++.|+|+||+.........+.+++.+.++
T Consensus 55 ~pgi~V~~~~~~-~~~~~~kl~---~~~~sg~----~pDv~~~~~~~~~~~~~~g~l~~L~~~~~~~~~~~~~~~~~~~~ 126 (458)
T 3uor_A 55 NPTIHVDVQNIP-MTAAHEKLL---TAFAADG----LPDVCQLGNTWLPEFALLDTLEPMQPYVARSKIVDPADYFPGVW 126 (458)
T ss_dssp CTTEEEEEEECC-HHHHHHHHH---HHHHTTC----CCSEEEEETTTHHHHHHTTCBCCCHHHHHTCSSCCGGGBCHHHH
T ss_pred CCCcEEEEEEcC-hHHHHHHHH---HHHhCCC----CCCEEEECcHhHHHHHHCCCccCCchhhhcccccCHHHhCHHHH
Confidence 346788777664 455665532 2233333 59999998889999999999999986420000013455666665
Q ss_pred hhhCCCccCCCCCEEEeecccceeEEEEeccccccCCC-CCCCCHHHhcCc--cc-----cCceeee--cChhHHHHHHH
Q 016927 85 RRNDAGEIDPRGKIWAAPYRWGTMVIAYKKSKFRKHNL-APIEDWKDLWRP--EL-----AGRISMV--NSPREVIGSVL 154 (380)
Q Consensus 85 ~~~~~~~~d~~g~~Y~vP~~~~~~gi~Yn~d~~~~~g~-~~p~sW~dL~~~--~~-----~gki~~~--~~~~~~~~~al 154 (380)
+. ..+ +|+.||+|+..++.+|+||+|+|+++|+ ++|+||+||++. ++ .|.+++. .+....+...+
T Consensus 127 ~~---~~~--dG~~y~vP~~~~~~~l~Ynkdl~~~aGl~~~P~Twdel~~~~~~l~~~~g~~~~g~~~~~~~~~~~~~~~ 201 (458)
T 3uor_A 127 DT---NLV--DGTLYGVPWYVDTRLLFYRKDLLREAGYSQMPKTWAEMEQVMAAIKRKVGPDRYAILMPLNEFEQQLSFA 201 (458)
T ss_dssp HT---TEE--TTEECCEEEEEECCEEEEEHHHHHHTTCSSCCCBHHHHHHHHHHHHHHHCTTSEEEECCTTCCHHHHHHH
T ss_pred hh---eEE--CCEEEEecccCcccEEEEeHHHHHHcCCCCCCCCHHHHHHHHHHHhcccCCCceeEecCchhHHHHHHHH
Confidence 42 234 5999999999999999999999999999 899999999974 22 2444443 22223344445
Q ss_pred HHcCCCCCCCCh-hhhhc-cchHHHHHHHHHHhhh--ccc-c--cchhHHHHhHcCCEEEEEechhcHHHHHHcCC----
Q 016927 155 KYMGASYNSNNI-DLQVA-GGKISVQQNLALLANQ--ARL-F--DSTHYLKAFGIGDVWVAVGWSSDVLPAVKRMS---- 223 (380)
Q Consensus 155 ~~~G~~~~~~~~-~~~~~-~~~~~~~~~L~~l~~~--v~~-~--~~~~~~~~~~~Gev~~~~~~s~~~~~~~~~~~---- 223 (380)
...|..+.+.+. ...+. ....++.+.+.++... +.. . ..++..+.|.+|+++|.+.++..+..+....+
T Consensus 202 ~~~G~~~~~~~~~~~~~~~~~~~~al~~~~~l~~~g~~~~~~~~~~~~~~~~f~~G~~am~~~~~~~~~~~~~~~~~~~~ 281 (458)
T 3uor_A 202 LQQDDRLLRDHDNYGNFRGAGFRKALGFYDNMYQQGWAPKVSETQVSNVWYEFFNGYYAFYLSGPWNVREFKLRQPPGME 281 (458)
T ss_dssp HTSSSCSEETTTTEECTTSHHHHHHHHHHHHHHHTTSSCCCCGGGSSCHHHHHHHTSEEEEEECTHHHHHHHHHCCGGGT
T ss_pred HHcCCeEEcCCCCeeecCCHHHHHHHHHHHHHHHcCCCCCcccccchHHHHHHhcCCEEEEEcCcchHHHHhhhCccccc
Confidence 566766533221 11111 1245666777666542 111 1 12346789999999999998887766665543
Q ss_pred -CcEEE-ccC----CCccceeeeEEEeCCCCCcccccCCCCCCChHHHHHHHHHHhhHHhhchhhhhhcCCCCCCccccc
Q 016927 224 -NVAVV-VPK----SGASLWADLWAIPAASRLETKQIGGRVRGPSPLIHQWIEFCLQTARALPFKQEVIPGASPSALETT 297 (380)
Q Consensus 224 -~i~~~-~P~----eG~~~~~d~~~I~k~s~~~~~~~~~~~~~~~~~A~~fi~fllspe~~~~~~~~~~~~~~p~~~~~a 297 (380)
+++++ +|. .+...+..+++|+++++|++ +|++||+|++++|.|..+++. .++ .|.. ..+
T Consensus 282 ~~~~~~~~P~~~~~~~~~~~~~~~~I~~~s~~~e------------aA~~fl~~l~s~e~q~~~~~~-~g~-~P~~-~~~ 346 (458)
T 3uor_A 282 GNWGTAPLPGPNGLGAGIAGGSSLVIFKSSQHKD------------ASWKLIEYLSQPQVQARFHAI-IGD-LPPR-RST 346 (458)
T ss_dssp TSEEEECCBBSSSBCCCBCEEEEEEEBTTCSCHH------------HHHHHHHHHTSHHHHHHHHHH-HCC-BCSB-HHH
T ss_pred ceEEEEeCCCCCCCCccccCceEEEEECCCCCHH------------HHHHHHHHHcCHHHHHHHHHh-cCC-CCCc-HHH
Confidence 67776 675 34667788999999999998 999999999999999998875 344 3431 111
Q ss_pred cccCChhHhcCCCCCCCccccCCCCHHHHhhcccccCCC--HHHHHHHHHHHHHhc---CCCcchHHHHHHHHHHHHH
Q 016927 298 LVKLPEELLKGKPSQDTNLIVGVPPAEILARCEFLEPLS--EATLSDYEWLVADLQ---KPAPVLMKRVQHYLSSLIQ 370 (380)
Q Consensus 298 ~~~l~~e~~~~~p~~~~~l~~~~p~~~~~~~~~~~~~~~--~~~~~~~~~~w~~~~---~~~~~~~~~~~~~~~~~~~ 370 (380)
.-++++..++ . + ..+ .+.+.+....+..+ .+..+.+.+.++++. ...+..+++.++..+.+++
T Consensus 347 --~~~~~~~~~~-~----~-~~~--~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~G~~t~~~al~~~~~~~~~~l~ 414 (458)
T 3uor_A 347 --WKLPSLANDA-L----A-HAF--GDQLERVKATPKVLEWERIVQEMRLVTERVVRGGQSHDAAVQELDQRVDEILA 414 (458)
T ss_dssp --HHSHHHHTCT-T----T-HHH--HHHTTTCBCCCCCTTHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTH
T ss_pred --hhChhhccCh-H----H-HHH--HHHHHhCcCCCCCCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Confidence 1234443321 1 1 011 23344444333322 234445555555543 2234455666666555554
No 17
>1xvx_A YFUA; periplasmic iron binding protein, iron binding protein; 1.53A {Yersinia enterocolitica} SCOP: c.94.1.1 PDB: 1xvy_A*
Probab=99.91 E-value=2.1e-23 Score=198.47 Aligned_cols=223 Identities=14% Similarity=0.112 Sum_probs=157.9
Q ss_pred ceEEEEEEcccHHHHHHhcccchhHhhcCCCCCCCccEEEeCcH-HHHHHHHcCcccccccCCCccccCCCChhhHHHHh
Q 016927 7 RLKFQMNLCASIDGIVNNLSVPFNKVKAKSAPYMAADLVSVGDS-WLSFAIKKRLIEPIAGAEDQDWFKCLSHKWKVYLR 85 (380)
Q Consensus 7 ~v~v~~~~~gs~~~~~~~~~~~~~kl~ag~~~~~~~Dvv~~~~~-~~~~~~~~gll~pld~~~~~~~~~~~~~~~~~~~~ 85 (380)
+++|+++++ +.+++.++ |++... +..|||+.+.+. ++..+++.|+|+||+.. .++++.+ .
T Consensus 30 gi~V~~~~~-~~~~~~~k-------l~~~~~-~~~pDv~~~~~~~~~~~~~~~g~l~~l~~~----~~~~~~~---~--- 90 (312)
T 1xvx_A 30 GIKVTLRNG-GDSELGNQ-------LVQEGS-ASPADVFLTENSPAMVLVDNAKLFAPLDAV----TQAQVAQ---E--- 90 (312)
T ss_dssp CCCEEEEEC-CHHHHHHH-------HHHHGG-GCCCSEEEESSSHHHHHHHHTTCBCCCCHH----HHHHBCG---G---
T ss_pred CCEEEEEEC-ChHHHHHH-------HHHhhC-CCCCCEEEecchHHHHHHHhCCCcccCChH----HHhhCCH---H---
Confidence 456655553 34455544 543211 236999999874 88999999999999853 1222221 1
Q ss_pred hhCCCccCCCCCEEEeecccceeEEEEeccccccCCCCCCCCHHHhcCccccCceeeecChhHH--HHHHHHHcCCCCCC
Q 016927 86 RNDAGEIDPRGKIWAAPYRWGTMVIAYKKSKFRKHNLAPIEDWKDLWRPELAGRISMVNSPREV--IGSVLKYMGASYNS 163 (380)
Q Consensus 86 ~~~~~~~d~~g~~Y~vP~~~~~~gi~Yn~d~~~~~g~~~p~sW~dL~~~~~~gki~~~~~~~~~--~~~al~~~G~~~~~ 163 (380)
..+.+| |++|+.+++.+|+||+++|+++| +|+||+||++++++|++++....... +...+...++
T Consensus 91 -----~~~~~g--y~~P~~~~~~~l~ynk~~~~~~~--~P~tw~dl~~~~~~g~~~~~~~~~~~~~~~~~~~~~~G---- 157 (312)
T 1xvx_A 91 -----YRPEHG--RWTGIAARSTVFVYNPEKISEAE--LPKSIMDLAKPEWKGRWAASPSGADFQAIVSAMLELKG---- 157 (312)
T ss_dssp -----GSCSSS--SCEEEEEEEEEEEECTTTSCGGG--SCSSGGGGGSGGGTTSEEECTTSHHHHHHHHHHHHHHC----
T ss_pred -----HCCCCC--eEEEEeccceEEEEEhhhccccC--CCCCHHHHhCHHhcCCEeeCCCCccHHHHHHHHHHHhC----
Confidence 123334 99999999999999999998765 68999999999999998876321111 1112222211
Q ss_pred CChhhhhccchHHHHHHHHHHhhhcccccc-hhHHHHhHcCCEEEEEechhcHHHHH-H---cCCCcEEEccCC---Ccc
Q 016927 164 NNIDLQVAGGKISVQQNLALLANQARLFDS-THYLKAFGIGDVWVAVGWSSDVLPAV-K---RMSNVAVVVPKS---GAS 235 (380)
Q Consensus 164 ~~~~~~~~~~~~~~~~~L~~l~~~v~~~~~-~~~~~~~~~Gev~~~~~~s~~~~~~~-~---~~~~i~~~~P~e---G~~ 235 (380)
.+++.+++.++.++...+.+ .+..+.|.+|+++|++.|++.+.... . .+.++++++|.+ |+.
T Consensus 158 ----------~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~G~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~g~~ 227 (312)
T 1xvx_A 158 ----------EKATLEWLKAMKTNFTAYKGNSTVMKAVNAGQIDGGVIYHYYRFVDQAKTGENSGKTQLHYFKHQDPGAF 227 (312)
T ss_dssp ----------HHHHHHHHHHHHHHEEECSSHHHHHHHHHTTSSSEEEEETHHHHHHHTTTCTTTTTCEEECCCTTCGGGC
T ss_pred ----------cHHHHHHHHHHHHhCcccCCchHHHHHHHcCceEEEEecchhHHHHHhhcccCCCceEEEccCCCCCcce
Confidence 12567777778776543333 46778999999999999988776532 2 345788888875 566
Q ss_pred ceeeeEEEeCCCCCcccccCCCCCCChHHHHHHHHHHhhHHhhchh-hh
Q 016927 236 LWADLWAIPAASRLETKQIGGRVRGPSPLIHQWIEFCLQTARALPF-KQ 283 (380)
Q Consensus 236 ~~~d~~~I~k~s~~~~~~~~~~~~~~~~~A~~fi~fllspe~~~~~-~~ 283 (380)
.+.++++|+++++|++ +|++||+|+++++.|..+ .+
T Consensus 228 ~~~~~~~i~~~s~~~~------------~A~~fi~fl~s~e~q~~~~~~ 264 (312)
T 1xvx_A 228 VSISGGGVLASSKHPK------------EAQEFVKWITGKSGQDILRTN 264 (312)
T ss_dssp EEEEEEEEBTTCSSHH------------HHHHHHHHHHSHHHHHHHHHS
T ss_pred eeeeeEEEecCCCCHH------------HHHHHHHHHhCHHHHHHHhhc
Confidence 7788999999999998 999999999999999988 65
No 18
>3c9h_A ABC transporter, substrate binding protein; structural genom MCSG, PSI-2, protein structure initiative; HET: CIT; 1.90A {Agrobacterium tumefaciens str}
Probab=99.91 E-value=1.5e-23 Score=203.70 Aligned_cols=226 Identities=14% Similarity=0.168 Sum_probs=161.1
Q ss_pred ceEEEEEEcccHHHHHHhcccchhHhhcC-CCCCCCccEEEeCcH-HHHHHHHcCcccccccCCCccccCCCChhhHHHH
Q 016927 7 RLKFQMNLCASIDGIVNNLSVPFNKVKAK-SAPYMAADLVSVGDS-WLSFAIKKRLIEPIAGAEDQDWFKCLSHKWKVYL 84 (380)
Q Consensus 7 ~v~v~~~~~gs~~~~~~~~~~~~~kl~ag-~~~~~~~Dvv~~~~~-~~~~~~~~gll~pld~~~~~~~~~~~~~~~~~~~ 84 (380)
+++|+.+..++ .+..++ |++. ..+++.+||++.+.. ++..+.+.|+|+||+.. ...++.+..
T Consensus 60 gi~V~~~~~~~-~~~~~k-------l~~~~~ag~~~~DV~~~~~~~~~~~~~~~g~l~~l~~~----~~~~~~~~~---- 123 (355)
T 3c9h_A 60 DIAVHYEDMLT-GEIYDR-------IVKETDAGKKTADFAFSSAMDLQVKLSNDGYAQRSDLA----MSARWPAWA---- 123 (355)
T ss_dssp TCEEEEEECCH-HHHHHH-------HHHHHHTTCCBCSEEEESCHHHHHHHHHTTCEECCCCT----TTTTSCGGG----
T ss_pred CeEEEEEeCCh-HHHHHH-------HHHHHhcCCCCCCEEEecchHHHHHHHhCCCcccCCCh----hhhhCcchh----
Confidence 56666666544 344444 3322 111236999999874 57799999999999853 122332210
Q ss_pred hhhCCCccCCCCCEEEeecccceeEEEEeccccccCCCCCCCCHHHhcC------ccccCceeeecChhHHHHHHHHHcC
Q 016927 85 RRNDAGEIDPRGKIWAAPYRWGTMVIAYKKSKFRKHNLAPIEDWKDLWR------PELAGRISMVNSPREVIGSVLKYMG 158 (380)
Q Consensus 85 ~~~~~~~~d~~g~~Y~vP~~~~~~gi~Yn~d~~~~~g~~~p~sW~dL~~------~~~~gki~~~~~~~~~~~~al~~~G 158 (380)
.+ +|+.| |+.+++.+|+||+++|++. .+|+||+||++ ++++|++++.+......+..+....
T Consensus 124 ------~~--~~~~~--~~~~~~~~l~YNk~~~~~~--~~P~tw~dL~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~ 191 (355)
T 3c9h_A 124 ------NW--RNTAY--ALTFEPAVFVYHKPSFTTE--KPPATRAEFVDYLERHAKEVHGRIATYDIERSGVGFLFMSRD 191 (355)
T ss_dssp ------EE--TTTEE--ECBCEEEEEEEEGGGCSSS--CCCCSHHHHHHHHHHTHHHHTTCEEEECTTC-CHHHHHHHHH
T ss_pred ------ee--CCeEE--EEecCcEEEEEEHHhcCCC--CCCCCHHHHHHHHHhcchhhCCceeecCccccchHHHHHhcc
Confidence 12 36655 6777899999999999864 47999999998 7899999987643332222222110
Q ss_pred CCCCCCChhhhhccchHHHHHHHHHHhhh-ccccc-chhHHHHhHcCCEEEEEechhcHHHH-HHcCCCcEEEccCCCcc
Q 016927 159 ASYNSNNIDLQVAGGKISVQQNLALLANQ-ARLFD-STHYLKAFGIGDVWVAVGWSSDVLPA-VKRMSNVAVVVPKSGAS 235 (380)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~L~~l~~~-v~~~~-~~~~~~~~~~Gev~~~~~~s~~~~~~-~~~~~~i~~~~P~eG~~ 235 (380)
.. . .+++++++.+++++ +..+. +.+..+.|.+|+++|++.|++..... .+.+.++++++|++|+.
T Consensus 192 -------~~-~----~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~G~~a~~~~~~~~~~~~~~~~~~~~~~~~P~~g~~ 259 (355)
T 3c9h_A 192 -------QE-Q----FGDIWSVIKAMGAAGVKVYSTSSAILERVSDGRFVLGYNILGSYAADWASRHPDVGIVLPKDYTV 259 (355)
T ss_dssp -------HH-H----CTTHHHHHHHHHHTTCEEESCHHHHHHHHHTTSCSEEEEEEHHHHHHHHHHCTTEEEECCSSCEE
T ss_pred -------hh-c----cHHHHHHHHHHHhcCCeecCCcHHHHHHHHCCCeEEEEecchhHHHHHHhcCCCeeEEecCCCce
Confidence 00 0 12457788888764 44443 35778899999999999998877654 45678899999999988
Q ss_pred ceeeeEEEeCCCCCcccccCCCCCCChHHHHHHHHHHhhHHhhchhhhh
Q 016927 236 LWADLWAIPAASRLETKQIGGRVRGPSPLIHQWIEFCLQTARALPFKQE 284 (380)
Q Consensus 236 ~~~d~~~I~k~s~~~~~~~~~~~~~~~~~A~~fi~fllspe~~~~~~~~ 284 (380)
.+.++++|+++++|++ +|++||+|++|+|.|..+.+.
T Consensus 260 ~~~~~~~I~k~s~~~e------------aA~~Fi~fl~s~e~q~~~~~~ 296 (355)
T 3c9h_A 260 VMSRIGLVPEAAANPE------------LGRRYLEFFMSKEGQTIMARQ 296 (355)
T ss_dssp EECCEEEEETTBSCHH------------HHHHHHHHHHSHHHHHHHHHH
T ss_pred eeeeEEEEECCCCCHH------------HHHHHHHHHcCHHHHHHHHhc
Confidence 8889999999999998 999999999999999998864
No 19
>3e13_X Putative iron-uptake ABC transport system, periplasmic iron-binding protein; beta sheet surrounded by alpha helices; 1.60A {Campylobacter jejuni} SCOP: c.94.1.1 PDB: 1y4t_A
Probab=99.90 E-value=7.1e-23 Score=194.93 Aligned_cols=240 Identities=15% Similarity=0.197 Sum_probs=169.7
Q ss_pred ceEEEEEEcccHHHHHHhcccchhHhhcCCCCCCCccEEEeCc-HHHHHHHHcCcccccccCCCccccC-CCChhhHHHH
Q 016927 7 RLKFQMNLCASIDGIVNNLSVPFNKVKAKSAPYMAADLVSVGD-SWLSFAIKKRLIEPIAGAEDQDWFK-CLSHKWKVYL 84 (380)
Q Consensus 7 ~v~v~~~~~gs~~~~~~~~~~~~~kl~ag~~~~~~~Dvv~~~~-~~~~~~~~~gll~pld~~~~~~~~~-~~~~~~~~~~ 84 (380)
+|+|++++ ++..++.++ |++++. ++.+||++..+ .++..+++.|+|+||+.. .++ ++.+
T Consensus 27 gi~V~~~~-~~~~~~~~k-------l~a~~~-~~~~Dv~~~~~~~~~~~~~~~g~l~~l~~~----~~~~~~~~------ 87 (322)
T 3e13_X 27 GIKVNHTQ-AKASELIKR-------LSLEGS-NSPADIFITADISNLTEAKNLGLLSPVSSK----YLEEFIPA------ 87 (322)
T ss_dssp CCEEEEEE-CCHHHHHHH-------HHHHGG-GCCCCEEEESCHHHHHHHHHTTCEECCCCH----HHHHHSCG------
T ss_pred CcEEEEEE-CCcHHHHHH-------HHHhcc-CCCCCEEEecCcHHHHHHHHCCCcccCChh----Hhhhhchh------
Confidence 67777775 445666655 554322 23699999965 579999999999999853 121 1222
Q ss_pred hhhCCCccCCCCCEEEeecccceeEEEEeccc-cccCCCCCCCCHHHhcCccccCceeeecChhH----HHHHHHHHcCC
Q 016927 85 RRNDAGEIDPRGKIWAAPYRWGTMVIAYKKSK-FRKHNLAPIEDWKDLWRPELAGRISMVNSPRE----VIGSVLKYMGA 159 (380)
Q Consensus 85 ~~~~~~~~d~~g~~Y~vP~~~~~~gi~Yn~d~-~~~~g~~~p~sW~dL~~~~~~gki~~~~~~~~----~~~~al~~~G~ 159 (380)
...+++|+. +|+.+++.+|+||+++ |++ .+|+||+||++++++|++++.+.... .+...+...|
T Consensus 88 -----~~~~~~g~~--~~~~~~~~~l~yn~~~~~~~---~~p~tw~dl~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~G- 156 (322)
T 3e13_X 88 -----HLRDKDKEW--FAITKRARIIAYNKNTNIDI---SKMKNYEDLAKAEFKGEIVMRSATAPYSKTLLASIIANDG- 156 (322)
T ss_dssp -----GGBCTTSSC--EEEEEEEEEEEEETTSCCCC---TTCCSGGGGGSGGGTTCEECCCTTSHHHHHHHHHHHHHHC-
T ss_pred -----hhCCCCCcE--EEeeceeEEEEECCccccCC---CCCCCHHHHhhhhhcCeEeecCCCCchhHHHHHHHHHhcC-
Confidence 124556764 5566789999999999 986 48999999999999999998764322 1111222223
Q ss_pred CCCCCChhhhhccchHHHHHHHHHHhhhccccc--c-hhHHHHhHcCCEEEEEechh---cHHH-----HHHcCCCcEEE
Q 016927 160 SYNSNNIDLQVAGGKISVQQNLALLANQARLFD--S-THYLKAFGIGDVWVAVGWSS---DVLP-----AVKRMSNVAVV 228 (380)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~L~~l~~~v~~~~--~-~~~~~~~~~Gev~~~~~~s~---~~~~-----~~~~~~~i~~~ 228 (380)
.+++.+++.+++++...+. + .+..+.|.+|+++|++.++. .+.. ....+.+++++
T Consensus 157 --------------~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~G~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (322)
T 3e13_X 157 --------------NKEAKAWAKGVLENLATNPKGGDRDQARQVFAGEAKFAVMNTYYIGLLKNSKNPKDVEVGNSLGII 222 (322)
T ss_dssp --------------HHHHHHHHHHHHHHBSSSCCSSHHHHHHHHHHTSCSEEEEEHHHHHHHHTCSSHHHHHHHHTEEEE
T ss_pred --------------HHHHHHHHHHHHHhcCcCCCCCcHHHHHHHHCCCCcEEeechHHHHHHHhccccchhccccceeEe
Confidence 2357788888888776543 2 34578899999999998433 3221 12335689999
Q ss_pred ccC---CCccceeeeEEEeCCCCCcccccCCCCCCChHHHHHHHHHHhhHHhhchhhhhhcCCCCCCccccccccCChhH
Q 016927 229 VPK---SGASLWADLWAIPAASRLETKQIGGRVRGPSPLIHQWIEFCLQTARALPFKQEVIPGASPSALETTLVKLPEEL 305 (380)
Q Consensus 229 ~P~---eG~~~~~d~~~I~k~s~~~~~~~~~~~~~~~~~A~~fi~fllspe~~~~~~~~~~~~~~p~~~~~a~~~l~~e~ 305 (380)
+|. +|+..+.++++|+++++|++ +|++||+|++++|.|..+++. ++..|. ......++++
T Consensus 223 ~P~~~~~g~~~~~~~~~i~~~s~~~~------------~A~~fi~fl~s~e~q~~~~~~--~~~~P~---~~~~~~~~~~ 285 (322)
T 3e13_X 223 FPNQDNRGTHINISGIAMTKSSKNQD------------AAKKFMEFMLSPEIQKILTDS--NYEFPI---RNDVELSQTV 285 (322)
T ss_dssp CTTTTTTCBCEEEEEEEEETTCSCHH------------HHHHHHHHHTSHHHHHHHHHT--TCCEES---STTSCCCHHH
T ss_pred cCCCCCCCceeeeeeeEEecCCCCHH------------HHHHHHHHHhCHHHHHHHHhc--CcccCC---ccCCCCcccC
Confidence 998 78999999999999999998 999999999999999999874 334454 2233456666
Q ss_pred hc
Q 016927 306 LK 307 (380)
Q Consensus 306 ~~ 307 (380)
+.
T Consensus 286 ~~ 287 (322)
T 3e13_X 286 KD 287 (322)
T ss_dssp HH
T ss_pred CC
Confidence 54
No 20
>1elj_A Maltodextrin-binding protein; protein-carbohydrate complex, maltose binding protein, MBP fold, ABC transporter fold, thermophilic protein; HET: CME GLC; 1.85A {Pyrococcus furiosus} SCOP: c.94.1.1
Probab=99.90 E-value=1.4e-22 Score=198.47 Aligned_cols=247 Identities=14% Similarity=0.122 Sum_probs=161.0
Q ss_pred CceEEEEEEcccHHHHHHhcccchhHhhcCCCCCCCccEEEeCcHHHHHHHHcCcccccccCCCccccCCC-ChhhHHHH
Q 016927 6 KRLKFQMNLCASIDGIVNNLSVPFNKVKAKSAPYMAADLVSVGDSWLSFAIKKRLIEPIAGAEDQDWFKCL-SHKWKVYL 84 (380)
Q Consensus 6 ~~v~v~~~~~gs~~~~~~~~~~~~~kl~ag~~~~~~~Dvv~~~~~~~~~~~~~gll~pld~~~~~~~~~~~-~~~~~~~~ 84 (380)
++|+|+++..+ +..++ |++.-.++..|||+.+...++..+++.|+|+||+.... +++ +++.+..+
T Consensus 34 p~i~V~~~~~~---~~~~k-------l~~~~~~g~~PDv~~~~~~~~~~~~~~g~l~~L~~~~~----~~~~~~~~~~~~ 99 (381)
T 1elj_A 34 PEVEIVFEQKP---NLEDA-------LKAAIPTGQGPDLFIWAHDWIGKFAEAGLLEPIDEYVT----EDLLNEFAPMAQ 99 (381)
T ss_dssp TTEEEEEEECT---THHHH-------HHHHTTTTCSCSEEEEEGGGHHHHHHTTCBCCCTTTCC----HHHHTTBCHHHH
T ss_pred CCcEEEEEECC---cHHHH-------HHHHHhcCCCCcEEEeCCccHHHHHHCCCeecChhhhh----hhhhhhhcHHHH
Confidence 45666666654 33333 44322222369999998889999999999999996421 111 23344444
Q ss_pred hhhCCCccCCCCCEEEeecccceeEEEEeccccccCCCCCCCCHHHhcCc--ccc--C--ceeeecCh-hHHHHHHHHHc
Q 016927 85 RRNDAGEIDPRGKIWAAPYRWGTMVIAYKKSKFRKHNLAPIEDWKDLWRP--ELA--G--RISMVNSP-REVIGSVLKYM 157 (380)
Q Consensus 85 ~~~~~~~~d~~g~~Y~vP~~~~~~gi~Yn~d~~~~~g~~~p~sW~dL~~~--~~~--g--ki~~~~~~-~~~~~~al~~~ 157 (380)
+. ..+ +|+.||+|+.+++.+|+|||++|++ +|+||+||++. +++ | ++++.... ...+...+...
T Consensus 100 ~~---~~~--dGk~ygvP~~~~~~~l~YNkdlf~~----~P~Twdel~~~a~~l~~~~~~~~g~~~~~~~~~~~~~~~~~ 170 (381)
T 1elj_A 100 DA---MQY--KGHYYALPFAAETVAIIYNKEMVSE----PPKTFDEMKAIMEKYYDPANEKYGIAWPINAYFISAIAQAF 170 (381)
T ss_dssp HH---TEE--TTEECEEEEEEEECEEEEETTTCSS----CCSSHHHHHHHHHHHCBGGGTBCSCBCCCSHHHHHHHHTTT
T ss_pred HH---eEE--CCEEEEeccccceeEEEEehHhhcc----CcccHHHHHHHHHHhcCCCCCeEEEEccCchHHHHHHHHhc
Confidence 32 235 4999999999999999999999997 89999999863 222 2 34433221 11222233445
Q ss_pred CCCCCCCCh-hhhhcc-chHHHHHHHHHHh-hhccc-ccchhHHHHhHcCCEEEEEechhcHHHHHHcCCCcEEE-ccC-
Q 016927 158 GASYNSNNI-DLQVAG-GKISVQQNLALLA-NQARL-FDSTHYLKAFGIGDVWVAVGWSSDVLPAVKRMSNVAVV-VPK- 231 (380)
Q Consensus 158 G~~~~~~~~-~~~~~~-~~~~~~~~L~~l~-~~v~~-~~~~~~~~~~~~Gev~~~~~~s~~~~~~~~~~~~i~~~-~P~- 231 (380)
|+.+.+.+. ...+.. ...++.+++.+|. +.... ...++..+.|.+|+++|.+.++.....+.+.+.+++++ +|.
T Consensus 171 Gg~~~~~~~~~~~~~~~~~~~al~~~~~l~~~~~~~~~~~~~~~~~f~~G~~am~~~g~w~~~~~~~~~~~~g~~~~P~~ 250 (381)
T 1elj_A 171 GGYYFDDKTEQPGLDKPETIEGFKFFFTEIWPYMAPTGDYNTQQSIFLEGRAPMMVNGPWSINDVKKAGINFGVVPLPPI 250 (381)
T ss_dssp SCCSEETTTTEECTTSHHHHHHHHHHHHHTGGGSCSCCCHHHHHHHHHTTSSSEEEECGGGHHHHHHTTCCEEEECCCCE
T ss_pred CCeeecCCCCccCCCCHHHHHHHHHHHHHhhccCCCCCChhHHHHHHhcCCeeEEecCchhhhHHHhcCCceeEEeCCCc
Confidence 654322111 111111 1335666666664 22211 22345667899999999998887766666667788887 774
Q ss_pred --CC------ccceeeeEEEeCCCCCcccccCCCCCCChHHHHHHHHHHhh-HHhhchhhhhhcCC
Q 016927 232 --SG------ASLWADLWAIPAASRLETKQIGGRVRGPSPLIHQWIEFCLQ-TARALPFKQEVIPG 288 (380)
Q Consensus 232 --eG------~~~~~d~~~I~k~s~~~~~~~~~~~~~~~~~A~~fi~flls-pe~~~~~~~~~~~~ 288 (380)
+| ...+.++++|+++++|++ +|++||+|+++ +|.|..+++. .++
T Consensus 251 ~~~g~~~~~~~~~g~~~~~i~~~s~~~e------------~A~~fi~~l~~~~e~~~~~~~~-~g~ 303 (381)
T 1elj_A 251 IKDGKEYWPRPYGGVKLIYFAAGIKNKD------------AAWKFAKWLTTSEESIKTLALE-LGY 303 (381)
T ss_dssp EETTEEECCCCEEEEEEEEEBTTCSCHH------------HHHHHHHHHHHCHHHHHHHHHH-HCC
T ss_pred CCCCccCCCCccccceEEEEECCCCCHH------------HHHHHHHHHhcCHHHHHHHHHh-cCC
Confidence 45 334667899999999998 99999999999 9999998865 344
No 21
>2pt1_A Iron transport protein; C-clamp, iron-binding protein, solute-binding protein, perip binding protein, ABC transporter, metal transport; 2.00A {Synechocystis SP} PDB: 2pt2_A 3f11_A
Probab=99.90 E-value=2.6e-23 Score=199.75 Aligned_cols=244 Identities=16% Similarity=0.161 Sum_probs=168.8
Q ss_pred ceEEEEEEcccHHHHHHhcccchhHhhcCCCCCCCccEEEe-CcHHHHHHHHcCcccccccCCCccccC-CCChhhHHHH
Q 016927 7 RLKFQMNLCASIDGIVNNLSVPFNKVKAKSAPYMAADLVSV-GDSWLSFAIKKRLIEPIAGAEDQDWFK-CLSHKWKVYL 84 (380)
Q Consensus 7 ~v~v~~~~~gs~~~~~~~~~~~~~kl~ag~~~~~~~Dvv~~-~~~~~~~~~~~gll~pld~~~~~~~~~-~~~~~~~~~~ 84 (380)
+|+|+++..+ .+++.++ |++++. +..|||+.+ +..++..+++.|+|+||+... ++ ++...
T Consensus 44 gi~V~~~~~~-~~~~~~k-------l~~~~~-~~~pDv~~~~~~~~~~~~~~~g~l~~l~~~~----~~~~~~~~----- 105 (334)
T 2pt1_A 44 GIKVNLIEGK-ADELLER-------IKSEGA-NSPADVLLTVDLARLWRAEEDGIFQPVQSEI----LETNVPEY----- 105 (334)
T ss_dssp CCEEEEEECC-HHHHHHH-------HHHHGG-GCCCCEEEEESHHHHHHHHHTTCBCCCCCHH----HHHHSCGG-----
T ss_pred CCEEEEEeCC-cHHHHHH-------HHhccC-CCCCCEEEecCchHHHHHHhCCceeeCCHhH----hhccCchh-----
Confidence 5777777665 3555544 544321 236999986 457999999999999998531 11 12211
Q ss_pred hhhCCCccCCCCCEEEeecccceeEEEEeccccccCCCCCCCCHHHhcCccccCceeeecChhHHHHHHHHHcCCCCCCC
Q 016927 85 RRNDAGEIDPRGKIWAAPYRWGTMVIAYKKSKFRKHNLAPIEDWKDLWRPELAGRISMVNSPREVIGSVLKYMGASYNSN 164 (380)
Q Consensus 85 ~~~~~~~~d~~g~~Y~vP~~~~~~gi~Yn~d~~~~~g~~~p~sW~dL~~~~~~gki~~~~~~~~~~~~al~~~G~~~~~~ 164 (380)
..+.+|+.|++|+ ++.+|+||+++|+++ +|+||+||++++++|++++.+.. ..++..+...+.+
T Consensus 106 ------~~~~dG~~y~~p~--~~~~l~Ynkd~~~~~---~p~tw~el~~~~~~g~~~~~~~~-~~~~~~~~~~~~~---- 169 (334)
T 2pt1_A 106 ------LRSPDGMWFGFTK--RARVIMYNKGKVKPE---ELSTYEELADPKWKGRVIIRSSS-NEYNQSLVASLVV---- 169 (334)
T ss_dssp ------GBCTTSSCEEEEE--EEEEEEEETTTCCGG---GCCCSGGGGSGGGTTCBCCCCTT-SHHHHHHHHHHHH----
T ss_pred ------eECCCCcEEeecc--ccEEEEEeccccccc---CCCCHHHHhhhhhcCeeEecCCC-CchHHHHHHHHHH----
Confidence 1245699999997 788999999999874 68999999999999998876533 2232222211110
Q ss_pred ChhhhhccchHHHHHHHHHHhhhcccc--cc-hhHHHHhHcCCEEEEEechhcHHHHHH--------cCCCcEEEccC--
Q 016927 165 NIDLQVAGGKISVQQNLALLANQARLF--DS-THYLKAFGIGDVWVAVGWSSDVLPAVK--------RMSNVAVVVPK-- 231 (380)
Q Consensus 165 ~~~~~~~~~~~~~~~~L~~l~~~v~~~--~~-~~~~~~~~~Gev~~~~~~s~~~~~~~~--------~~~~i~~~~P~-- 231 (380)
. .+..++.+++.+|.++...+ .+ .+..+.|.+|+++|++.|+.....+.. .+.++++++|.
T Consensus 170 -~-----~g~~~a~~~~~~l~~~~~~~~~~~~~~~~~~f~~G~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~ 243 (334)
T 2pt1_A 170 -A-----DGEESTLAWAKGFVSNFAREPQGNDTAQIEAVSSGEADLTLANTYYMGRLLESEDPAQKAIAENVGVFFPNQE 243 (334)
T ss_dssp -H-----HCHHHHHHHHHHHHHTBSSCCCSCHHHHHHHHHHTSCSEEEEEHHHHHHHHTCSCHHHHHHHHTEEEECCCTT
T ss_pred -c-----cChHHHHHHHHHHHHhcCCCCCCCCHHHHHHHhcCceeEEeccchhhHhhhhcccccccccccceeEEecCCC
Confidence 0 01346778888887765322 23 357789999999999998765544332 12478888997
Q ss_pred -CCccceeeeEEEeCCCCCcccccCCCCCCChHHHHHHHHHHhhHHhhchhhhhhcCCCCCCccccccccCChhHhc
Q 016927 232 -SGASLWADLWAIPAASRLETKQIGGRVRGPSPLIHQWIEFCLQTARALPFKQEVIPGASPSALETTLVKLPEELLK 307 (380)
Q Consensus 232 -eG~~~~~d~~~I~k~s~~~~~~~~~~~~~~~~~A~~fi~fllspe~~~~~~~~~~~~~~p~~~~~a~~~l~~e~~~ 307 (380)
+|+..+.++++|+++++|++ +|++||+|++++|.|..+++. .+ ..|. ......+++++.
T Consensus 244 ~~g~~~~~~~~~i~~~s~~~~------------aA~~fi~~l~s~e~q~~~~~~-~~-~~P~---~~~~~~~~~~~~ 303 (334)
T 2pt1_A 244 GRGTHVNVSGVGVVKTAPNRE------------GAVKFIEFLVSEPAQAFLAQN-NY-EYPV---LAGVPLNKSVAS 303 (334)
T ss_dssp TTCBCEEEEEEEEBTTCTTHH------------HHHHHHHHHTSHHHHHHHHHH-HC-CEES---STTCCCCHHHHT
T ss_pred CCCCEeceeEEEEECCCCCHH------------HHHHHHHHHhCHHHHHHHHhh-cC-CcCc---cCCCCCCcccCC
Confidence 57788889999999999998 999999999999999998864 23 3443 122345677664
No 22
>1nnf_A Iron-utilization periplasmic protein; iron-binding protein, EDTA-Fe-protein complex, metal binding protein; HET: EDT; 1.10A {Haemophilus influenzae} SCOP: c.94.1.1 PDB: 1mrp_A 1d9v_A 3od7_A 3odb_A 1qvs_A 2o6a_A 2o68_A 3kn8_A 3kn7_A 2o69_A 1qw0_A 1o7t_A* 1xc1_A* 1r1n_A* 1d9y_A
Probab=99.90 E-value=1.5e-22 Score=192.19 Aligned_cols=226 Identities=15% Similarity=0.131 Sum_probs=161.9
Q ss_pred CceEEEEEEcccHHHHHHhcccchhHhhc-CCCCCCCccEEEeCc-HHHHHHHHcCcccccccCCCccccCCCChhhHHH
Q 016927 6 KRLKFQMNLCASIDGIVNNLSVPFNKVKA-KSAPYMAADLVSVGD-SWLSFAIKKRLIEPIAGAEDQDWFKCLSHKWKVY 83 (380)
Q Consensus 6 ~~v~v~~~~~gs~~~~~~~~~~~~~kl~a-g~~~~~~~Dvv~~~~-~~~~~~~~~gll~pld~~~~~~~~~~~~~~~~~~ 83 (380)
.+|+|+++++ +.+++.++ |++ ++. ..|||+.+.+ .++..+++.|+|+||+.. .++++.+. +
T Consensus 24 ~gi~V~~~~~-~~~~~~~k-------l~~~~~~--~~pDv~~~~~~~~~~~~~~~g~l~~l~~~----~~~~~~~~---~ 86 (309)
T 1nnf_A 24 TGIKVTLNSG-KSEQLAGQ-------LKEEGDK--TPADVFYTEQTATFADLSEAGLLAPISEQ----TIQQTAQK---G 86 (309)
T ss_dssp SCCCEEEEEC-CHHHHHHH-------HHHHGGG--CCCSEEEESCGGGHHHHHHTTCBCCCCHH----HHHTTCCT---T
T ss_pred CCcEEEEEeC-ChHHHHHH-------HHHhcCC--CCCCEEEecchhHHHHHHHCCCcccCCHH----Hhhhcchh---h
Confidence 4577777764 45566655 543 321 2699999986 689999999999999853 12233221 1
Q ss_pred HhhhCCCccCCCCCEEEeecccceeEEEEeccccccCCCCCCCCHHHhcCccccCceeeecChhH--HHHHHHHHcCCCC
Q 016927 84 LRRNDAGEIDPRGKIWAAPYRWGTMVIAYKKSKFRKHNLAPIEDWKDLWRPELAGRISMVNSPRE--VIGSVLKYMGASY 161 (380)
Q Consensus 84 ~~~~~~~~~d~~g~~Y~vP~~~~~~gi~Yn~d~~~~~g~~~p~sW~dL~~~~~~gki~~~~~~~~--~~~~al~~~G~~~ 161 (380)
.. .+.+| |++|+..++.+|+||+++|+++ .+|+||+||++++++|++++.+.... .+..++...|+
T Consensus 87 ~~------~~~~g--~~~P~~~~~~~l~YNk~~~~~~--~~P~tw~dl~~~~~~g~~~~~~~~~~~~~~~~~~~~~~G-- 154 (309)
T 1nnf_A 87 VP------LAPKK--DWIALSGRSRVVVYDHTKLSEK--DMEKSVLDYATPKWKGKIGYVSTSGAFLEQVVALSKMKG-- 154 (309)
T ss_dssp CC------CCTTS--CCEEEEEEEEEEEEETTTCCGG--GSCSSGGGGGSGGGTTTEEECTTSHHHHHHHHHHHHHHC--
T ss_pred cc------cCCCC--eEEEeeeeEEEEEEehhhcccc--CCCCCHHHHhchhhcCeEeecCCCchHHHHHHHHHHhcC--
Confidence 10 13445 6899999999999999999865 37999999999999999988643211 22222222222
Q ss_pred CCCChhhhhccchHHHHHHHHHHhhhccccc-chhHHHHhHcCCEEEEEechhcHHHH-HH---cCCCcEEEccC---CC
Q 016927 162 NSNNIDLQVAGGKISVQQNLALLANQARLFD-STHYLKAFGIGDVWVAVGWSSDVLPA-VK---RMSNVAVVVPK---SG 233 (380)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~L~~l~~~v~~~~-~~~~~~~~~~Gev~~~~~~s~~~~~~-~~---~~~~i~~~~P~---eG 233 (380)
..++.++|.++.++...+. ..+..+.|.+|+++|++.|++.+..+ .. .+.+++++.|. +|
T Consensus 155 ------------~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~G~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~g 222 (309)
T 1nnf_A 155 ------------DKVALNWLKGLKENGKLYAKNSVALQAVENGEVPAALINNYYWYNLAKEKGVENLKSRLYFVRHQDPG 222 (309)
T ss_dssp ------------HHHHHHHHHHHHHHEEECSSHHHHHHHHHTTSCSEEEEEHHHHHHHHHHHCGGGCSEEEECCCTTCGG
T ss_pred ------------hHHHHHHHHHHHHhCCCCCCCchHHHHHhcCCccEEEccHHHHHHHHhcccCCCCceEEeCCCCCCCc
Confidence 1356778888877654443 24677899999999999998877655 43 34578876543 36
Q ss_pred ccceeeeEEEeCCCCCcccccCCCCCCChHHHHHHHHHHhhHHhhchhhhh
Q 016927 234 ASLWADLWAIPAASRLETKQIGGRVRGPSPLIHQWIEFCLQTARALPFKQE 284 (380)
Q Consensus 234 ~~~~~d~~~I~k~s~~~~~~~~~~~~~~~~~A~~fi~fllspe~~~~~~~~ 284 (380)
...+.++++|+++++|++ +|++||+|++++|.|..+++.
T Consensus 223 ~~~~~~~~~i~~~s~~~~------------aA~~fi~~l~s~e~q~~~~~~ 261 (309)
T 1nnf_A 223 ALVSYSGAAVLKASKNQA------------EAQKFVDFLASKKGQEALVAA 261 (309)
T ss_dssp GCEEEEEEEEBTTCSCHH------------HHHHHHHHHHSHHHHHHHHHH
T ss_pred eeeccccEEEEcCCCCHH------------HHHHHHHHHhCHHHHHHHHhc
Confidence 677888999999999998 999999999999999998864
No 23
>1q35_A Iron binding protein FBPA; metal binding protein; 1.20A {Mannheimia haemolytica} SCOP: c.94.1.1 PDB: 1si0_A 1si1_A
Probab=99.89 E-value=1.2e-22 Score=193.71 Aligned_cols=244 Identities=15% Similarity=0.086 Sum_probs=166.3
Q ss_pred ceEEEEEEcccHHHHHHhcccchhHhhcCCCCCCCccEEEeC-cHHHHHHHHcCcccccccCCCccccC-CCChhhHHHH
Q 016927 7 RLKFQMNLCASIDGIVNNLSVPFNKVKAKSAPYMAADLVSVG-DSWLSFAIKKRLIEPIAGAEDQDWFK-CLSHKWKVYL 84 (380)
Q Consensus 7 ~v~v~~~~~gs~~~~~~~~~~~~~kl~ag~~~~~~~Dvv~~~-~~~~~~~~~~gll~pld~~~~~~~~~-~~~~~~~~~~ 84 (380)
+|+|+++ + +..++.+ ||++++. +..|||+.+. ..++..+++.|+|+||+... ++ ++..
T Consensus 27 gi~V~~~-~-~~~~~~~-------kl~~~~~-~~~pDv~~~~~~~~~~~~~~~g~l~~l~~~~----~~~~~~~------ 86 (320)
T 1q35_A 27 GIKVNII-F-ADKGLVD-------RVKQEGE-LSPADVLLTVDISRVMEIVNADLAQKIDSKV----LEKNIPA------ 86 (320)
T ss_dssp CCEEEEE-E-CC-CCHH-------HHHHHGG-GCCCCEEEESCHHHHHHHHHTTCBCCCCCHH----HHHHSCG------
T ss_pred CCEEEEE-e-CcHHHHH-------HHHhccC-CCCCCEEEecChHHHHHHHHCCCcccCChhh----hhccCch------
Confidence 5677666 3 3344444 4654321 2369999975 46999999999999998531 11 1211
Q ss_pred hhhCCCccCCCCCEEEeecccceeEEEEeccccccCCCCCCCCHHHhcCccccCceeeecChhHHHHHHHHHcCCCCCCC
Q 016927 85 RRNDAGEIDPRGKIWAAPYRWGTMVIAYKKSKFRKHNLAPIEDWKDLWRPELAGRISMVNSPREVIGSVLKYMGASYNSN 164 (380)
Q Consensus 85 ~~~~~~~~d~~g~~Y~vP~~~~~~gi~Yn~d~~~~~g~~~p~sW~dL~~~~~~gki~~~~~~~~~~~~al~~~G~~~~~~ 164 (380)
...+++|+.|++|+ ++.+|+||+++|+++ .+|+||+||++++++|++++.+.. ..++..+......
T Consensus 87 -----~~~~~~G~~~~~~~--~~~~l~ynkd~~~~~--~~P~tw~el~~~~~~g~~~~~~~~-~~~~~~~~~~~~~---- 152 (320)
T 1q35_A 87 -----QFRDSNDQWFGLTT--RARVIYTSKDRVGKL--PAGFDYLDLAKPEYKGKVCVRSGK-NSYNVSLFAAMIE---- 152 (320)
T ss_dssp -----GGBCTTSSCEEEEE--EEEEEEEETTTTCSC--CTTCCGGGGGSGGGTTCEECSCTT-SHHHHHHHHHHHH----
T ss_pred -----heECCCCeEEeeec--ceEEEEEehHHhhhc--CCCCCHHHHhhHHhCCcEEeccCC-CchhHHHHHHHHH----
Confidence 11245688888875 688999999999875 589999999999999999886533 2222211111000
Q ss_pred ChhhhhccchHHHHHHHHHHhhhcccc--cch-hHHHHhHcCCEEEEEechhcHHHHHH--c----CCCcEEEcc--CCC
Q 016927 165 NIDLQVAGGKISVQQNLALLANQARLF--DST-HYLKAFGIGDVWVAVGWSSDVLPAVK--R----MSNVAVVVP--KSG 233 (380)
Q Consensus 165 ~~~~~~~~~~~~~~~~L~~l~~~v~~~--~~~-~~~~~~~~Gev~~~~~~s~~~~~~~~--~----~~~i~~~~P--~eG 233 (380)
. .+..++.+++.++.++...+ .++ +..+.|.+|+++|++.|++....+.. . +.++++++| ++|
T Consensus 153 --~----~G~~~a~~~~~~l~~~~~~~~~~~~~~~~~~f~~G~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~g 226 (320)
T 1q35_A 153 --H----YGIEKTKAFLEGLKANLARKPQGGDRDQVKAIKEGICDYSIGNSYYYGKMLDDEKQKSWAEAAIINFPSGEHG 226 (320)
T ss_dssp --H----HHHHHHHHHHHHHHHTBSSCCCSCHHHHHHHHHHTSCSEEEEETHHHHHHHHSTTTHHHHHTEEEECCCSTTC
T ss_pred --h----cCHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHCCCccEEeccHHHHHHhhhcccccCCCcceEEecCCCCCC
Confidence 0 01235677888887765432 233 67789999999999998876654442 1 247888899 578
Q ss_pred ccceeeeEEEeCCCCCcccccCCCCCCChHHHHHHHHHHhhHHhhchhhhhhcCCCCCCccccccccCChhHhc
Q 016927 234 ASLWADLWAIPAASRLETKQIGGRVRGPSPLIHQWIEFCLQTARALPFKQEVIPGASPSALETTLVKLPEELLK 307 (380)
Q Consensus 234 ~~~~~d~~~I~k~s~~~~~~~~~~~~~~~~~A~~fi~fllspe~~~~~~~~~~~~~~p~~~~~a~~~l~~e~~~ 307 (380)
+..+.++++|+++++|++ +|++||+|+++++.|..+++. .+ ..|. ......+++++.
T Consensus 227 ~~~~~~~~~i~~~s~~~~------------aA~~fi~~l~s~e~q~~~~~~-~~-~~P~---~~~~~~~~~~~~ 283 (320)
T 1q35_A 227 THKNISGVVIAKHSPNKA------------NAVKLIEYLSGEKAQGLYAEL-NH-EYPV---KEGIEPSAIVKG 283 (320)
T ss_dssp BEEEEEEEEEBTTCTTHH------------HHHHHHHHHHSHHHHHHHHHH-HC-CEES---STTCCCCHHHHH
T ss_pred ccccceeEEEECCCCCHH------------HHHHHHHHHhCHHHHHHHhcc-Cc-ccCc---CCCCCCCccCCC
Confidence 888889999999999998 999999999999999998864 23 3443 122345677654
No 24
>2voz_A FUTA2, periplasmic iron-binding protein; ferric binding protein, metal-binding protein, TAT; 1.70A {Synechocystis SP} PDB: 2vp1_A*
Probab=99.88 E-value=4e-22 Score=192.22 Aligned_cols=229 Identities=16% Similarity=0.180 Sum_probs=157.7
Q ss_pred hHhhcCCCCCCCccEEEeCc-HHHHHHHHcCcccccccCCCccccC-CCChhhHHHHhhhCCCccCCCCCEEEeecccce
Q 016927 30 NKVKAKSAPYMAADLVSVGD-SWLSFAIKKRLIEPIAGAEDQDWFK-CLSHKWKVYLRRNDAGEIDPRGKIWAAPYRWGT 107 (380)
Q Consensus 30 ~kl~ag~~~~~~~Dvv~~~~-~~~~~~~~~gll~pld~~~~~~~~~-~~~~~~~~~~~~~~~~~~d~~g~~Y~vP~~~~~ 107 (380)
+||+++.. +..|||+.+.+ .++..+++.|+|+||+... ++ ++.+. ..+.+|+. +|+..++
T Consensus 69 ~kl~~~~~-~~~pDv~~~~~~~~~~~~~~~g~l~~l~~~~----~~~~~~~~-----------~~~~~G~~--~p~~~~~ 130 (346)
T 2voz_A 69 ERIQSEGA-NSPGDILFTVDAGMLWRAEQAGLFQPVRSGK----LNERIPEN-----------LRHPDGLW--YGFTQRA 130 (346)
T ss_dssp HHHHHTGG-GCCCSEEEEESHHHHHHHHHTTCBCCCCCHH----HHHHSCGG-----------GBCTTSSC--EEEEEEE
T ss_pred HHHHHhcC-CCCCCEEEecCHHHHHHHHhCCCeeecCchh----hhhcCCHh-----------hCCCCCcE--Eeeeccc
Confidence 45666532 23699999854 7899999999999998531 11 12211 12345764 4778899
Q ss_pred eEEEEeccccccCCCCCCCCHHHhcCccccCceeeecChhHHHHHHHHHcCCCCCCCChhhhhccchHHHHHHHHHHhhh
Q 016927 108 MVIAYKKSKFRKHNLAPIEDWKDLWRPELAGRISMVNSPREVIGSVLKYMGASYNSNNIDLQVAGGKISVQQNLALLANQ 187 (380)
Q Consensus 108 ~gi~Yn~d~~~~~g~~~p~sW~dL~~~~~~gki~~~~~~~~~~~~al~~~G~~~~~~~~~~~~~~~~~~~~~~L~~l~~~ 187 (380)
.+|+||+++|+++ +|+||+||++++++|++++.+... .+...+...+.... +.+++.+++.+|.++
T Consensus 131 ~~l~YNkd~~~~~---~P~tw~dl~~~~~~g~~~~~~~~~-~~~~~~~~~~~~~~----------g~~~a~~~~~~l~~~ 196 (346)
T 2voz_A 131 RVLYYSRDRVNPA---DLSTYEALADPQWRGKILVRPSSN-VYNLSLTASRIAIH----------GEPETRRWLQGLVGN 196 (346)
T ss_dssp EEEEEETTTCCGG---GCCCSGGGGSGGGTTTEECCCTTS-HHHHHHHHHHHHHH----------CHHHHHHHHHHHHHT
T ss_pred eEEEEehhhcCcc---CCCCHHHHhhHHhcCcEEecCCCC-cchHHHHHHHHHhh----------chHHHHHHHHHHHHh
Confidence 9999999999873 789999999999999998865332 22211111100000 013567788888776
Q ss_pred cccc--cc-hhHHHHhHcCCEEEEEechhcHHHHHH------c--CCCcEEEcc-----CCCccceeeeEEEeCCCCCcc
Q 016927 188 ARLF--DS-THYLKAFGIGDVWVAVGWSSDVLPAVK------R--MSNVAVVVP-----KSGASLWADLWAIPAASRLET 251 (380)
Q Consensus 188 v~~~--~~-~~~~~~~~~Gev~~~~~~s~~~~~~~~------~--~~~i~~~~P-----~eG~~~~~d~~~I~k~s~~~~ 251 (380)
...+ .+ .+..+.|.+|+++|++.|+.....+.. . +.++++++| ++|+..+.++++|+++++|++
T Consensus 197 ~~~~~~~~~~~~~~~f~~G~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~g~~~~~~~~~i~~~s~~~~ 276 (346)
T 2voz_A 197 FARQPEGNDTAQIRAIAAGIGDVAIANSYYYIRLQKSTDPADQEVVEKVSLFFPNTGSGERGTHVNVSGAGVLKNAPNRD 276 (346)
T ss_dssp BSSSCCSCHHHHHHHHHTTSCSEEEEEHHHHHHHHHCCCHHHHHHHHHEEEECCSCSTTSCCBCEEEEEEEEBTTCTTHH
T ss_pred cCccccCCcHHHHHHHHCCCceEEecccHHHHHHhhcccccccCCCCceeEecCCCCCCCCCceecceeEEEeCCCCCHH
Confidence 5322 22 367789999999999998765544332 1 246888889 578888889999999999998
Q ss_pred cccCCCCCCChHHHHHHHHHHhhHHhhchhhhhhcCCCCCCccccccccCChhHhc
Q 016927 252 KQIGGRVRGPSPLIHQWIEFCLQTARALPFKQEVIPGASPSALETTLVKLPEELLK 307 (380)
Q Consensus 252 ~~~~~~~~~~~~~A~~fi~fllspe~~~~~~~~~~~~~~p~~~~~a~~~l~~e~~~ 307 (380)
+|++||+|++++|.|..+++. .+ ..|. ......++++..
T Consensus 277 ------------aA~~fi~~l~s~e~q~~~~~~-~g-~~P~---~~~~~~~~~~~~ 315 (346)
T 2voz_A 277 ------------AAIAFLEYLASDDAQRYFAEG-NN-EYPV---IPGVPIDPVLAA 315 (346)
T ss_dssp ------------HHHHHHHHHTSHHHHHHHHHH-TT-CEES---STTSCCCHHHHT
T ss_pred ------------HHHHHHHHHcCHHHHHHHHhc-cC-cccC---cCCCCCCcccCC
Confidence 999999999999999998864 23 3453 122346666643
No 25
>2gha_A Maltose ABC transporter, periplasmic maltose-BIND protein; periplasmic binding protein, MBP, maltotriose; HET: MLR; 1.60A {Thermotoga maritima} PDB: 2ghb_A 2fnc_A*
Probab=99.88 E-value=5.9e-22 Score=194.06 Aligned_cols=242 Identities=15% Similarity=0.198 Sum_probs=166.3
Q ss_pred eEEEEEEcccHHHHHHhcccchhHhhcCCCCCCCccEEEeCcHHHHHHHHcCcccccccCCCccccCCCChhhHHHHhhh
Q 016927 8 LKFQMNLCASIDGIVNNLSVPFNKVKAKSAPYMAADLVSVGDSWLSFAIKKRLIEPIAGAEDQDWFKCLSHKWKVYLRRN 87 (380)
Q Consensus 8 v~v~~~~~gs~~~~~~~~~~~~~kl~ag~~~~~~~Dvv~~~~~~~~~~~~~gll~pld~~~~~~~~~~~~~~~~~~~~~~ 87 (380)
|+|+.+..+. ++..+++. +.+.+| . .|||+.++..++..+++.|+|+||+... ..+++.+.+++.
T Consensus 30 i~V~~~~~~~-~~~~~kl~---~~~~~g-~---~pDv~~~~~~~~~~~~~~g~l~~L~~~~------~~~~~~~~~~~~- 94 (382)
T 2gha_A 30 VEVEVQYVNF-QDIKSKFL---TAAPEG-Q---GADIIVGAHDWVGELAVNGLIEPIPNFS------DLKNFYETALNA- 94 (382)
T ss_dssp CEEEEEECCH-HHHHHHHH---HHGGGT-C---SCSEEEEEGGGHHHHHHTTCBCCCCCCT------TGGGBCHHHHHH-
T ss_pred cEEEEEecCh-HHHHHHHH---HHhhCC-C---CCCEEEeCcccHHHHHhCCCcccCCchh------hhhhcCHHHHHh-
Confidence 7777777653 45555532 112333 2 5999999888999999999999998642 134444555442
Q ss_pred CCCccCCCCCEEEeecccceeEEEEeccccccCCCCCCCCHHHhcCc--ccc-----CceeeecChhHHH--HHHHHHcC
Q 016927 88 DAGEIDPRGKIWAAPYRWGTMVIAYKKSKFRKHNLAPIEDWKDLWRP--ELA-----GRISMVNSPREVI--GSVLKYMG 158 (380)
Q Consensus 88 ~~~~~d~~g~~Y~vP~~~~~~gi~Yn~d~~~~~g~~~p~sW~dL~~~--~~~-----gki~~~~~~~~~~--~~al~~~G 158 (380)
..+ +|+.||+|+..++.+|+||+|+|++ +|+||+||++. +++ |++.+.......+ ...+...|
T Consensus 95 --~~~--dG~~y~vP~~~~~~~l~YNkdl~~~----~P~Twdel~~~~~~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~G 166 (382)
T 2gha_A 95 --FSY--GGKLYGIPYAMEAIALIYNKDYVPE----PPKTMDELIEIAKQIDEEFGGEVRGFITSAAEFYYIAPFIFGYG 166 (382)
T ss_dssp --TEE--TTEECCEEEEEECCEEEEETTTCSS----CCSBHHHHHHHHHHHHHHTTTSSEEEECCTTCHHHHHHHHHHTT
T ss_pred --cEE--CCEEEEEeeeccceEEEEehhhccC----CchhHHHHHHHHHHHhccCCCCeeeEEecCcchHHHHHHHHhCC
Confidence 234 4999999999999999999999987 89999999983 443 6666543322222 22344566
Q ss_pred CCCCC-CCh-----hhhhc-cchHHHHHHHHHHhhh--cc-cccchhHHHHhHcCCEEEEEechhcHHHHHHcCCCcEEE
Q 016927 159 ASYNS-NNI-----DLQVA-GGKISVQQNLALLANQ--AR-LFDSTHYLKAFGIGDVWVAVGWSSDVLPAVKRMSNVAVV 228 (380)
Q Consensus 159 ~~~~~-~~~-----~~~~~-~~~~~~~~~L~~l~~~--v~-~~~~~~~~~~~~~Gev~~~~~~s~~~~~~~~~~~~i~~~ 228 (380)
+.+.+ .+. ...+. ....++.+.+.+|... +. ..+.++..+.|.+|+++|.+.++..+..+.+.+.+++++
T Consensus 167 g~~~~~~~g~~~~~~~~~~~~~~~~al~~~~~l~~~g~~~~~~~~~~~~~~f~~G~~am~~~g~~~~~~~~~~~~~~~~~ 246 (382)
T 2gha_A 167 GYVFKQTEKGLDVNDIGLANEGAIKGVKLLKRLVDEGILDPSDNYQIMDSMFREGQAAMIINGPWAIKAYKDAGIDYGVA 246 (382)
T ss_dssp CEEEEEETTEEEEEEEETTSHHHHHHHHHHHHHHHTTSSCTTCCHHHHHHHHHTTCEEEEEECGGGHHHHHHTTCCEEEE
T ss_pred CeeeccCCCCccccccccCCHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhCCCccEEEcCHHHHHHHHhcCCceEEE
Confidence 54321 111 00111 1144667777777542 11 123346778999999999998877766666556788887
Q ss_pred -ccC--CCc----cceeeeEEEeCCCCCcccccCCCCCCChHHHHHHH-HHHhhHHhhchhhhh
Q 016927 229 -VPK--SGA----SLWADLWAIPAASRLETKQIGGRVRGPSPLIHQWI-EFCLQTARALPFKQE 284 (380)
Q Consensus 229 -~P~--eG~----~~~~d~~~I~k~s~~~~~~~~~~~~~~~~~A~~fi-~fllspe~~~~~~~~ 284 (380)
+|. +|. ..+..+++|+++++|++ +|++|| +|+++++.|..+++.
T Consensus 247 ~~P~~~~g~~~~~~~~~~~~~i~~~s~~~e------------~A~~fi~~~l~s~e~~~~~~~~ 298 (382)
T 2gha_A 247 PIPDLEPGVPARPFVGVQGFMVNAKSPNKL------------LAIEFLTSFIAKKETMYRIYLG 298 (382)
T ss_dssp CCCBSBTTBCCCCEEEEEEEEEBTTCTTHH------------HHHHHHHHTTTSHHHHHHHHHH
T ss_pred eCCCCCCCCCCcccccceEEEEeCCCCCHH------------HHHHHHHHHhcCHHHHHHHHHh
Confidence 785 453 35667899999999998 999999 999999999998865
No 26
>4dxb_A RG13, maltose-binding periplasmic protein, beta-lactama chimera; TEM, beta-lactamase, MBP, allosteric regulation, zinc bindin maltose binding; 2.29A {Escherichia coli} PDB: 4dxc_A
Probab=99.88 E-value=9.8e-23 Score=213.50 Aligned_cols=248 Identities=15% Similarity=0.129 Sum_probs=163.1
Q ss_pred ceEEEEEEcccHHHHHHhcccchhHhhcCCCCCCCccEEEeCcHHHHHHHHcCcccccccCCCccccCCCChhhHHHHhh
Q 016927 7 RLKFQMNLCASIDGIVNNLSVPFNKVKAKSAPYMAADLVSVGDSWLSFAIKKRLIEPIAGAEDQDWFKCLSHKWKVYLRR 86 (380)
Q Consensus 7 ~v~v~~~~~gs~~~~~~~~~~~~~kl~ag~~~~~~~Dvv~~~~~~~~~~~~~gll~pld~~~~~~~~~~~~~~~~~~~~~ 86 (380)
+|+|++++.+++.+.+.. .+.+|. .|||+.++..++..+++.|+|+||+.+. . ..+++.+.+++.
T Consensus 32 gIkV~~~~~~~~~~kl~~------~~asG~----~PDV~~~~~~~~~~~~~~G~L~pL~~~~--~---~~d~~~~~~~~~ 96 (637)
T 4dxb_A 32 GIKVTVEHPDKLEEKFPQ------VAATGD----GPDIIFWAHDRFGGYAQSGLLAEITPDK--A---FQDKLYPFTWDA 96 (637)
T ss_dssp SCCEEEECCTTHHHHHHH------HHHHTC----SCSEEEEEGGGHHHHHHTTCBCCCCCCH--H---HHTTBCHHHHHH
T ss_pred CcEEEEEeCCCHHHHHHH------HHhcCC----CCeEEEEChHHHHHHHHCCCEeeCCcCh--h---hHhhcCHHHHHh
Confidence 455655555544333222 133443 4999999999999999999999998642 1 123344444442
Q ss_pred hCCCccCCCCCEEEeecccceeEEEEeccccccCCCCCCCCHHHhcCc--ccc--Cce--eeecChhHHHHHHHHHcCCC
Q 016927 87 NDAGEIDPRGKIWAAPYRWGTMVIAYKKSKFRKHNLAPIEDWKDLWRP--ELA--GRI--SMVNSPREVIGSVLKYMGAS 160 (380)
Q Consensus 87 ~~~~~~d~~g~~Y~vP~~~~~~gi~Yn~d~~~~~g~~~p~sW~dL~~~--~~~--gki--~~~~~~~~~~~~al~~~G~~ 160 (380)
..+ +|+.||||+.+++.+|+||+|+|++ +|+||+||++. +++ +.. .+.......+...+...|..
T Consensus 97 ---~~~--dGk~YgvP~~~~~~~l~YNkdlf~e----~P~TwdEl~~~a~klk~~~~~~~~~~~~~~~~~~~~~~~~gg~ 167 (637)
T 4dxb_A 97 ---VRY--NGKLIAYPIAVEALSLIYNKDLLPN----PPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPLIAADGGY 167 (637)
T ss_dssp ---TEE--TTEECSEEEEEECCEEEEETTTCSS----CCSBSTTHHHHHHHHHTTTCCSBCCCCSSHHHHHHHHHHTTCE
T ss_pred ---cEE--CCEEEEEEEecceEEEEEEcHHhcC----CCCCHHHHHHHHHHhhhcCCCccccCCCcchhhhHHHHHhccc
Confidence 235 4999999999999999999999997 89999999875 222 222 22221222222233344432
Q ss_pred CCC-CCh-----hhhhc-cchHHHHHHHHHHhhhcc---cccchhHHHHhHcCCEEEEEechhcHHHHHHcCCCcEEE-c
Q 016927 161 YNS-NNI-----DLQVA-GGKISVQQNLALLANQAR---LFDSTHYLKAFGIGDVWVAVGWSSDVLPAVKRMSNVAVV-V 229 (380)
Q Consensus 161 ~~~-~~~-----~~~~~-~~~~~~~~~L~~l~~~v~---~~~~~~~~~~~~~Gev~~~~~~s~~~~~~~~~~~~i~~~-~ 229 (380)
... ... ...+. ....++.+++.++..+-. ..+.++..+.|.+|+++|.+.++..+..+.+.+.+++++ +
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~al~~l~~l~~~g~~~~~~~~~~~~~~F~~Gk~am~~~g~w~~~~~~~~~~~~gv~~l 247 (637)
T 4dxb_A 168 AFKYENGKYDIKDVGVDNAGAKAGLTFLVDLIKNKHMNADTDYSIAEAAFNKGETAMTINGPWAWSNIDTSKVNYGVTVL 247 (637)
T ss_dssp EEEEETTEEEEEEEESSSHHHHHHHHHHHHHHHTTSSCTTCCHHHHHHHHHTTCCSEEEECGGGHHHHHHHTCCEEEECC
T ss_pred ccccccccccccccccCCHHHHHHHHHHHHHHHcCCCCCCCChHHHHHHHHcCCEEEEEeCHHHHHHHHhcCCCeEEEEc
Confidence 110 000 00000 113456666666643211 112346778999999999999998888788788889875 6
Q ss_pred cC-----CCccceeeeEEEeCCCCCcccccCCCCCCChHHHHHHHH-HHhhHHhhchhhhhhcCCCCC
Q 016927 230 PK-----SGASLWADLWAIPAASRLETKQIGGRVRGPSPLIHQWIE-FCLQTARALPFKQEVIPGASP 291 (380)
Q Consensus 230 P~-----eG~~~~~d~~~I~k~s~~~~~~~~~~~~~~~~~A~~fi~-fllspe~~~~~~~~~~~~~~p 291 (380)
|. .++..+.++++|+++|+|++ +|++||+ ||++||+|..+.+. .++.+|
T Consensus 248 P~~~g~~~~~~~g~~~~~I~~~Skn~e------------aA~~Fl~~fl~s~E~q~~~~~~-~g~~p~ 302 (637)
T 4dxb_A 248 PTFKGQPSKPFVGVLSAGINAASPNKE------------LAKEFLENYLLTDEGLEAVNKD-KPLGAV 302 (637)
T ss_dssp CBBTTBCCCCEEEEEEEEEBTTCSCHH------------HHHHHHHHTTSSHHHHHHHHHH-SCCSEE
T ss_pred CCCCCCCCceEeeeeEEEEECCCCCHH------------HHHHHHHHHhCCHHHHHHHHHh-CCCCCC
Confidence 63 23456778999999999998 9999995 89999999999986 455444
No 27
>2zyo_A Solute-binding protein; open form, sugar binding protein; HET: GLC; 1.55A {Thermoactinomyces vulgaris} PDB: 2zyk_A* 2zym_A* 2zyn_A* 2dfz_A*
Probab=99.88 E-value=1.7e-21 Score=191.59 Aligned_cols=244 Identities=15% Similarity=0.154 Sum_probs=163.0
Q ss_pred ceEEEEEEcccHHHHHHhcccchhHhhcCCCCCCCccEEEeCcHHHHHHHHcCcccccccCCCccccCCCChhhHHHHhh
Q 016927 7 RLKFQMNLCASIDGIVNNLSVPFNKVKAKSAPYMAADLVSVGDSWLSFAIKKRLIEPIAGAEDQDWFKCLSHKWKVYLRR 86 (380)
Q Consensus 7 ~v~v~~~~~gs~~~~~~~~~~~~~kl~ag~~~~~~~Dvv~~~~~~~~~~~~~gll~pld~~~~~~~~~~~~~~~~~~~~~ 86 (380)
+|+|+++..+ .++..+++. +.+.+|. .|||+.++..++..+++.|+|+||+... . ..+++.+..++.
T Consensus 48 ~i~V~~~~~~-~~~~~~kl~---~~~~~g~----~pDv~~~~~~~~~~~~~~g~l~~L~~~~--~---~~~~~~~~~~~~ 114 (397)
T 2zyo_A 48 GIQVEVVPVA-LLKQQEKLT---LDGPAGK----GADLVTWPHDRLGEAVTKGLLQPIQVDN--S---VKNQFDDVAMKA 114 (397)
T ss_dssp CCEEEEEECC-GGGHHHHHH---HHHHHTC----CCSEEEEEGGGHHHHHHTTCEECCCCCH--H---HHTTBCHHHHHH
T ss_pred CCeEEEEecc-hHhHHHHHH---HHhhcCC----CCcEEEeCchhHHHHHhCCCcccCCchh--h---hHhhcChHhHhh
Confidence 4666666553 344554431 1233343 4999999888999999999999998631 1 123333444432
Q ss_pred hCCCccCCCCCEEEeecccceeEEEEeccccccCCCCCCCCHHHhcCc--ccc----CceeeecChhH--HHHHHHHHcC
Q 016927 87 NDAGEIDPRGKIWAAPYRWGTMVIAYKKSKFRKHNLAPIEDWKDLWRP--ELA----GRISMVNSPRE--VIGSVLKYMG 158 (380)
Q Consensus 87 ~~~~~~d~~g~~Y~vP~~~~~~gi~Yn~d~~~~~g~~~p~sW~dL~~~--~~~----gki~~~~~~~~--~~~~al~~~G 158 (380)
..+ +|+.||+|+..++.+|+||+++|++ +|+||++|++. +++ |++.+...... .+...+...|
T Consensus 115 ---~~~--dG~~y~~P~~~~~~~l~Ynkdl~~~----~P~Twdel~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~g 185 (397)
T 2zyo_A 115 ---LTY--GGKLYGLPKAIESVALIYNKKLMGQ----VPATYDELFQYAKANNKPDEQKYGVLFEANNFYYTYFLFAAKG 185 (397)
T ss_dssp ---TEE--TTEECEEEEEEECCEEEEETTTCSS----CCSBHHHHHHHHHHHCBGGGTBEEEEECTTCHHHHHHHHHHTT
T ss_pred ---eEE--CCEEEEecccccceEEEEehhhhcC----CCCCHHHHHHHHHHHhcCCCCeeeEEEecCcHHHHHHHHHhcC
Confidence 234 4999999999999999999999997 89999999983 454 66555432222 1122344566
Q ss_pred CCCCCCC------hhhhhc-cchHHHHHHHHHHhhh--cc-cccchhHHHHhHcCCEEEEEechhcHHHHHHcCCCcEEE
Q 016927 159 ASYNSNN------IDLQVA-GGKISVQQNLALLANQ--AR-LFDSTHYLKAFGIGDVWVAVGWSSDVLPAVKRMSNVAVV 228 (380)
Q Consensus 159 ~~~~~~~------~~~~~~-~~~~~~~~~L~~l~~~--v~-~~~~~~~~~~~~~Gev~~~~~~s~~~~~~~~~~~~i~~~ 228 (380)
..+.+.+ ....+. ....++.+++.+|... +. ..+.++..+.|.+|+++|.+.++..+..+.+.+.+++++
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~l~~~g~~~~~~~~~~~~~~f~~G~~am~~~~~~~~~~~~~~~~~~~~~ 265 (397)
T 2zyo_A 186 AAVFKEQDGTLDPNEIGLNSPEAVQGMNEVQKWFTEARLPQSLKADTVNGLFKSGKVAAVINGPWAIKDYQAAGINVGVA 265 (397)
T ss_dssp CCSEEEETTEEEEEEECTTSHHHHHHHHHHHHHHHTSCCCTTCCHHHHHHHHHTTCEEEEEECGGGHHHHHHTTCCEEEE
T ss_pred CeEEccCccCCCcCCcccCCHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHhcCCeeEEEcCCccHHHHHhcCcceEEE
Confidence 6542211 010111 1244666777766532 11 122346678999999999999887776666666688887
Q ss_pred -ccC-CCc----cceeeeEEEeCCCCCcccccCCCCCCChHHHHHHHHHHhhHHhhchhhhh
Q 016927 229 -VPK-SGA----SLWADLWAIPAASRLETKQIGGRVRGPSPLIHQWIEFCLQTARALPFKQE 284 (380)
Q Consensus 229 -~P~-eG~----~~~~d~~~I~k~s~~~~~~~~~~~~~~~~~A~~fi~fllspe~~~~~~~~ 284 (380)
+|. +|. ..+..+++|+++++|++ +|++||+|+++++.|..+++.
T Consensus 266 ~~P~~~g~~~~~~~~~~~~~i~~~s~~~e------------~A~~fi~~l~s~e~~~~~~~~ 315 (397)
T 2zyo_A 266 PLPKIDGKDAQTFIGVKGWYLSAYSKYPK------------YATELMQFLTSKEALASRFKE 315 (397)
T ss_dssp CCCBBTTBCCCCEEEEEEEEEETTCSCHH------------HHHHHHHHTTSHHHHHHHHHH
T ss_pred ecCCCCCCCCcceecceEEEEeCCCCCHH------------HHHHHHHHHcCHHHHHHHHHH
Confidence 676 342 34567899999999998 999999999999999998865
No 28
>3ob4_A Conglutin, maltose ABC transporter periplasmic protein, ARAH; alpha-amylase inhibitors (AAI), lipid transfer (LT) and SEED (SS) protein family; HET: MLR; 2.71A {Escherichia coli}
Probab=99.88 E-value=2.6e-22 Score=204.49 Aligned_cols=224 Identities=16% Similarity=0.138 Sum_probs=155.4
Q ss_pred CccEEEeCcHHHHHHHHcCcccccccCCCccccCCCChhhHHHHhhhCCCccCCCCCEEEeecccceeEEEEeccccccC
Q 016927 41 AADLVSVGDSWLSFAIKKRLIEPIAGAEDQDWFKCLSHKWKVYLRRNDAGEIDPRGKIWAAPYRWGTMVIAYKKSKFRKH 120 (380)
Q Consensus 41 ~~Dvv~~~~~~~~~~~~~gll~pld~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~Y~vP~~~~~~gi~Yn~d~~~~~ 120 (380)
.|||+.++..++..+++.|+|+||+... ...+++.+..++. ..+ +|+.||+|+.+++.+|+||+|+|++
T Consensus 56 ~PDv~~~~~~~~~~~~~~G~l~~L~~~~-----~~~~~~~~~~~~~---~~~--dGk~YgvP~~~~~~~l~YNkdl~~~- 124 (500)
T 3ob4_A 56 GPDIIFWAHDRFGGYAQSGLLAEITPAA-----AFQDKLYPFTWDA---VRY--NGKLIAYPIAVEALSLIYNKDLLPN- 124 (500)
T ss_dssp SCSEEEEEGGGHHHHHHTTCEECCCCCH-----HHHHHBCHHHHHH---TEE--TTEECSEEEEEECCEEEEETTTCSS-
T ss_pred CCeEEEECchhHHHHHHCCceecCCccH-----HHHhhcCHHHHHh---eEE--CCEEEEEecccCceEEEEEhHHhcC-
Confidence 5999999999999999999999998641 1122333444432 234 4999999999999999999999986
Q ss_pred CCCCCCCHHHhcCc--cc--cCceeeecCh--hHHHHHHHHHcCCCCCCCCh------hhhhc-cchHHHHHHHHHHhhh
Q 016927 121 NLAPIEDWKDLWRP--EL--AGRISMVNSP--REVIGSVLKYMGASYNSNNI------DLQVA-GGKISVQQNLALLANQ 187 (380)
Q Consensus 121 g~~~p~sW~dL~~~--~~--~gki~~~~~~--~~~~~~al~~~G~~~~~~~~------~~~~~-~~~~~~~~~L~~l~~~ 187 (380)
+|+||++|++. ++ +|+..+.-.. ...+...+...|+.....+. ...+. ....++.+++.++...
T Consensus 125 ---~P~Twdel~~~a~~l~~~g~~~~~~~~~~~~~~~~~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~l~~~ 201 (500)
T 3ob4_A 125 ---PPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPLIAADGGYAFKYAAGKYDIKDVGVDNAGAKAGLTFLVDLIKN 201 (500)
T ss_dssp ---CCSBGGGHHHHHHHHHHTTCEEECCCCSSHHHHHHHHHHTTCEEEEECSSSEEEEEEESSSHHHHHHHHHHHHHHHT
T ss_pred ---CCCCHHHHHHHHHHHHhCCCceEEeecCccHHHHHHHHHhCCeeecccCCccccCCcccCCHHHHHHHHHHHHHHHc
Confidence 89999999985 33 3654433211 22222334556654321110 00011 1245667777777543
Q ss_pred --cc-cccchhHHHHhHcCCEEEEEechhcHHHHHHcCCCcEEE-ccCC-----CccceeeeEEEeCCCCCcccccCCCC
Q 016927 188 --AR-LFDSTHYLKAFGIGDVWVAVGWSSDVLPAVKRMSNVAVV-VPKS-----GASLWADLWAIPAASRLETKQIGGRV 258 (380)
Q Consensus 188 --v~-~~~~~~~~~~~~~Gev~~~~~~s~~~~~~~~~~~~i~~~-~P~e-----G~~~~~d~~~I~k~s~~~~~~~~~~~ 258 (380)
+. ..+.++..+.|.+|+++|.+.|+..+..+.+.+.+++++ +|.. +...+..+++|+++++|++
T Consensus 202 g~~~~~~~~~~~~~~f~~G~~am~~~g~~~~~~~~~~~~~~~~~~~P~~~g~~~~~~~g~~~~~I~~~sk~~e------- 274 (500)
T 3ob4_A 202 KHMNADTDYSIAEAAFNKGETAMTINGPWAWSNIDTSAVNYGVTVLPTFKGQPSKPFVGVLSAGINAASPNKE------- 274 (500)
T ss_dssp TSSCTTCCHHHHHHHHHTTCEEEEEECGGGHHHHHTSSCCEEEECCCEETTEECCCEEEEEEEEEETTCSCHH-------
T ss_pred CCCCCCCChhHHHHHHHcCCeeEEecCchhHHHHHhcCCCeEEEECCCCCCCCccccccceEEEEECCCCCHH-------
Confidence 11 123356778999999999999998888777777788886 5742 2356678999999999998
Q ss_pred CCChHHHHHHHH-HHhhHHhhchhhhhhcCCCCC
Q 016927 259 RGPSPLIHQWIE-FCLQTARALPFKQEVIPGASP 291 (380)
Q Consensus 259 ~~~~~~A~~fi~-fllspe~~~~~~~~~~~~~~p 291 (380)
+|++||+ |++++|.|..+... .++..|
T Consensus 275 -----aA~~Fi~~~l~s~e~q~~~~~~-~~~~~p 302 (500)
T 3ob4_A 275 -----LAKEFLENYLLTDEGLEAVNKD-KPLGAV 302 (500)
T ss_dssp -----HHHHHHHHTTTSHHHHHHHHHH-SCCSEE
T ss_pred -----HHHHHHHHHhcCHHHHHHHHhc-CCCCCC
Confidence 9999995 99999999998864 333334
No 29
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=99.88 E-value=1.6e-21 Score=197.15 Aligned_cols=225 Identities=16% Similarity=0.141 Sum_probs=154.4
Q ss_pred CccEEEeCcHHHHHHHHcCcccccccCCCccccCCCChhhHHHHhhhCCCccCCCCCEEEeecccceeEEEEeccccccC
Q 016927 41 AADLVSVGDSWLSFAIKKRLIEPIAGAEDQDWFKCLSHKWKVYLRRNDAGEIDPRGKIWAAPYRWGTMVIAYKKSKFRKH 120 (380)
Q Consensus 41 ~~Dvv~~~~~~~~~~~~~gll~pld~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~Y~vP~~~~~~gi~Yn~d~~~~~ 120 (380)
.|||+.++..++..+++.|+|.||+... +. .+++.+..++. ..+ +|+.||+|+.+++.+|+||+|+|++
T Consensus 70 ~PDv~~~~~~~~~~~~~~G~l~~L~~~~--~~---~~~~~~~~~~~---~~~--dGk~YglP~~~~~~~l~YNkdl~~~- 138 (471)
T 3mq9_A 70 GPDIIFWAHDRFGGYAQSGLLAEITPDK--AF---QDKLYPFTWDA---VRY--NGKLIAYPIAVEALSLIYNKDLLPN- 138 (471)
T ss_dssp SCSEEEEETTHHHHHHHTTCBCCCCCCH--HH---HTTBCHHHHGG---GEE--TTEECEEEEEEEECEEEEETTTCSS-
T ss_pred CCeEEEECChhHHHHHHCCceecCCcch--HH---HhhcCHHHHHh---hEE--CCEEEEEeeeccceEEEEEhHHhcC-
Confidence 5999999988999999999999999641 11 23344444432 234 4999999999999999999999986
Q ss_pred CCCCCCCHHHhcCc--cc--cCceeeecCh--hHHHHHHHHHcCCCCCCCCh------hhhhc-cchHHHHHHHHHHhhh
Q 016927 121 NLAPIEDWKDLWRP--EL--AGRISMVNSP--REVIGSVLKYMGASYNSNNI------DLQVA-GGKISVQQNLALLANQ 187 (380)
Q Consensus 121 g~~~p~sW~dL~~~--~~--~gki~~~~~~--~~~~~~al~~~G~~~~~~~~------~~~~~-~~~~~~~~~L~~l~~~ 187 (380)
+|+||++|++. ++ +|+..+.-.. ...+...+...|+.....+. ...+. ....++.+++.++...
T Consensus 139 ---~P~Twdel~~~a~~l~~~g~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~d~~~~~~~~~~~~~al~~~~~l~~~ 215 (471)
T 3mq9_A 139 ---PPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPLIAADGGYAFKYENGKYDIKDVGVDNAGAKAGLTFLVDLIKN 215 (471)
T ss_dssp ---CCSBGGGHHHHHHHHHTTTCEEECCCCSSHHHHHHHHGGGTCEEEEECSSCEEEEEEESSSHHHHHHHHHHHHHHHT
T ss_pred ---CCCCHHHHHHHHHHHHhCCCceEEecCCchHHHHHHHHhcCCeeeccCCCccccCCcCcCCHHHHHHHHHHHHHHhc
Confidence 89999999985 23 3554432211 12222333455654221110 00011 1144666777776542
Q ss_pred --cc-cccchhHHHHhHcCCEEEEEechhcHHHHHHcCCCcEEE-ccCC-----CccceeeeEEEeCCCCCcccccCCCC
Q 016927 188 --AR-LFDSTHYLKAFGIGDVWVAVGWSSDVLPAVKRMSNVAVV-VPKS-----GASLWADLWAIPAASRLETKQIGGRV 258 (380)
Q Consensus 188 --v~-~~~~~~~~~~~~~Gev~~~~~~s~~~~~~~~~~~~i~~~-~P~e-----G~~~~~d~~~I~k~s~~~~~~~~~~~ 258 (380)
+. ....++..+.|.+|+++|.+.|+..+..+.+.+.+++++ +|.. +...+..+++|+++++|++
T Consensus 216 g~~~~~~~~~~~~~~f~~Gk~am~~~g~w~~~~~~~~~~~~~~~~~P~~~g~~~~~~~g~~~~~I~~~sk~~e------- 288 (471)
T 3mq9_A 216 KHMNADTDYSIAEAAFNKGETAMTINGPWAWSNIDTSKVNYGVTVLPTFKGQPSKPFVGVLSAGINAASPNKE------- 288 (471)
T ss_dssp TSSCTTCCHHHHHHHHHTTCEEEEEECGGGHHHHHTTTCCEEEECCCBBTTBCCCCEEEEEEEEEBSSCSCHH-------
T ss_pred CCCCCCCChHHHHHHHHcCCeEEEEecchhhHHHHhcCCCEEEEECCCCCCCCCcceecceEEEEECCCCCHH-------
Confidence 11 123356778999999999999998888777777788876 5741 2345668899999999998
Q ss_pred CCChHHHHHHHH-HHhhHHhhchhhhhhcCCCCCC
Q 016927 259 RGPSPLIHQWIE-FCLQTARALPFKQEVIPGASPS 292 (380)
Q Consensus 259 ~~~~~~A~~fi~-fllspe~~~~~~~~~~~~~~p~ 292 (380)
+|++||+ |+++++.|..+... .++..|.
T Consensus 289 -----aA~~Fi~~~l~s~e~q~~~~~~-~~~~~p~ 317 (471)
T 3mq9_A 289 -----LAKEFLENYLLTDEGLEAVNKD-KPLGAVA 317 (471)
T ss_dssp -----HHHHHHHHTTSSHHHHHHHHHH-SCCCSBS
T ss_pred -----HHHHHHHHHhcCHHHHHHHHhc-CCCCCCc
Confidence 9999995 99999999998764 3443453
No 30
>1y9u_A Putative iron binding protein; periplasmic binding protein, iron tyrosinate interaction, metal binding protein; 1.39A {Bordetella pertussis tohama I} SCOP: c.94.1.1 PDB: 2ows_A 2owt_A
Probab=99.87 E-value=2.6e-21 Score=184.75 Aligned_cols=237 Identities=14% Similarity=0.107 Sum_probs=160.2
Q ss_pred ceEEEEEEcccHHHHHHhcccchhHhhcCCCCCCCccEEEe-CcHHHHHHHHcCcccccccCCCccccC-CCChhhHHHH
Q 016927 7 RLKFQMNLCASIDGIVNNLSVPFNKVKAKSAPYMAADLVSV-GDSWLSFAIKKRLIEPIAGAEDQDWFK-CLSHKWKVYL 84 (380)
Q Consensus 7 ~v~v~~~~~gs~~~~~~~~~~~~~kl~ag~~~~~~~Dvv~~-~~~~~~~~~~~gll~pld~~~~~~~~~-~~~~~~~~~~ 84 (380)
+|+|+.+ + +..++.++ |++... +..+||+.+ +..++..+++.|+|+||+.. .+. .+...
T Consensus 31 gi~V~~~-~-~~~~~~~k-------l~~~~~-~~~~Dv~~~~~~~~~~~~~~~g~l~~l~~~----~~~~~~~~~----- 91 (323)
T 1y9u_A 31 GIKVNTV-F-VKDGLLER-------VRAEGD-KSPADVLMTVDIGNLIDLVNGGVTQKIQSQ----TLDSVVPAN----- 91 (323)
T ss_dssp CCEEEEE-E-CSSCHHHH-------HHHHGG-GCCCCEEEEESHHHHHHHHHTTCEECCCCH----HHHHHSCGG-----
T ss_pred CcEEEEE-e-CcHHHHHH-------HHHhcC-CCCCCEEEecChHHHHHHHHCCCeeeCChh----hhhhhccHh-----
Confidence 5677666 3 33455544 543211 125999988 55789999999999999852 111 11111
Q ss_pred hhhCCCccCCCCCEEEeecccceeEEEEecc-ccccCCCCCCCCHHHhcCccccCceeeecChhHH---HHHHHHHcCCC
Q 016927 85 RRNDAGEIDPRGKIWAAPYRWGTMVIAYKKS-KFRKHNLAPIEDWKDLWRPELAGRISMVNSPREV---IGSVLKYMGAS 160 (380)
Q Consensus 85 ~~~~~~~~d~~g~~Y~vP~~~~~~gi~Yn~d-~~~~~g~~~p~sW~dL~~~~~~gki~~~~~~~~~---~~~al~~~G~~ 160 (380)
..+++| |++|+.+++.+|+||++ +|++ | ||+||++++++|++++.+..... +...+...++
T Consensus 92 ------~~~~~g--~~~p~~~~~~~l~yNkd~~~~~-----P-tw~dl~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~G- 156 (323)
T 1y9u_A 92 ------LRGAEG--SWYALSLRDRVLYVEKDLKLDS-----F-RYGDLADPKWKGKVCIRSGQHPYNTALVAAMIAHDG- 156 (323)
T ss_dssp ------GBCGGG--SCEEEEEEEEEEEEETTCCCCC-----C-BGGGGGCGGGTTCEECCCTTSHHHHHHHHHHHHHHC-
T ss_pred ------hCCCCC--eEEEEecceeEEEEcCccccCC-----C-CHHHHhhHHhCCcEeecCCCcHhHHHHHHHHHHHhC-
Confidence 123345 89999999999999999 9975 5 99999999999998876532211 1111122211
Q ss_pred CCCCChhhhhccchHHHHHHHHHHhhhcccc--cc-hhHHHHhHcCCEEEEEechhcHHHHHH-------cC--CCcEEE
Q 016927 161 YNSNNIDLQVAGGKISVQQNLALLANQARLF--DS-THYLKAFGIGDVWVAVGWSSDVLPAVK-------RM--SNVAVV 228 (380)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~L~~l~~~v~~~--~~-~~~~~~~~~Gev~~~~~~s~~~~~~~~-------~~--~~i~~~ 228 (380)
.+++.+++.++.++...+ .+ .+..+.|.+|+++|++.|+..+..+.. .+ .++.++
T Consensus 157 -------------~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~G~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (323)
T 1y9u_A 157 -------------AEATEKWLRGVKANLARKAAGGDRDVARDILGGICDIGLANAYYVGHMKNAEPGTDARKWGDAIKVV 223 (323)
T ss_dssp -------------HHHHHHHHHHHHHHBSSCSCSCHHHHHHHHHTTSCSEEEEEHHHHHHHHHSCTTSHHHHHHHTEEEE
T ss_pred -------------hHHHHHHHHHHHHccCcccCCCchHHHHHHhCCcceEEEecHHHHHHHhhccccccccCCCCceeEe
Confidence 124567777777665322 23 367789999999999998877654443 12 357778
Q ss_pred cc------CCCccceeeeEEEeCCCCCcccccCCCCCCChHHHHHHHHHHhhHHhhchhhhhhcCCCCCCccccccccCC
Q 016927 229 VP------KSGASLWADLWAIPAASRLETKQIGGRVRGPSPLIHQWIEFCLQTARALPFKQEVIPGASPSALETTLVKLP 302 (380)
Q Consensus 229 ~P------~eG~~~~~d~~~I~k~s~~~~~~~~~~~~~~~~~A~~fi~fllspe~~~~~~~~~~~~~~p~~~~~a~~~l~ 302 (380)
+| ++|+..+..+++|+++++|++ +|++||+|+++++.|..+.+. .+ ..|. ......+
T Consensus 224 ~P~~~~~~~~g~~~~~~~~~i~~~s~~~~------------~A~~fi~fl~s~e~q~~~~~~-~~-~~P~---~~~~~~~ 286 (323)
T 1y9u_A 224 RPTFATAKDGGTHVNISGAAVAAHAPNKA------------NAVKLLEYLVSEPAQTLYAQA-NY-EYPV---RAGVKLD 286 (323)
T ss_dssp CCBCC----CCBCEEEEEEEEETTCTTHH------------HHHHHHHHHTSHHHHHHHHHH-TT-CEES---STTCCCC
T ss_pred cCCCCCCCCCCeeeccceEEEEcCCCCHH------------HHHHHHHHHcCHHHHHHHHhc-cc-cccC---CCCCCCC
Confidence 88 568888888999999999998 999999999999999988864 23 3443 1223456
Q ss_pred hhHhc
Q 016927 303 EELLK 307 (380)
Q Consensus 303 ~e~~~ 307 (380)
+.+..
T Consensus 287 ~~~~~ 291 (323)
T 1y9u_A 287 AVVAS 291 (323)
T ss_dssp HHHHH
T ss_pred ccCCC
Confidence 66543
No 31
>3n94_A Fusion protein of maltose-binding periplasmic Pro pituitary adenylate cyclase 1 receptor-short...; G-protein coupled receptor; HET: MAL; 1.80A {Escherichia coli} PDB: 3ehs_A* 3ehu_A* 3eht_A* 3n93_A* 3n95_A* 3n96_A*
Probab=99.87 E-value=2.4e-21 Score=195.74 Aligned_cols=218 Identities=16% Similarity=0.143 Sum_probs=152.1
Q ss_pred CccEEEeCcHHHHHHHHcCcccccccCCCccccCCCChhhHHHHhhhCCCccCCCCCEEEeecccceeEEEEeccccccC
Q 016927 41 AADLVSVGDSWLSFAIKKRLIEPIAGAEDQDWFKCLSHKWKVYLRRNDAGEIDPRGKIWAAPYRWGTMVIAYKKSKFRKH 120 (380)
Q Consensus 41 ~~Dvv~~~~~~~~~~~~~gll~pld~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~Y~vP~~~~~~gi~Yn~d~~~~~ 120 (380)
.|||+.++..++..+++.|+|+||+... +. .+++.+..++. ..+ +|+.||+|+..++.+|+||+|+|++
T Consensus 58 ~pDv~~~~~~~~~~~~~~g~l~~L~~~~--~~---~~~~~~~~~~~---~~~--dGk~yglP~~~~~~~l~YNkdl~~~- 126 (475)
T 3n94_A 58 GPDIIFWAHDRFGGYAQSGLLAEITPDK--AF---QDKLYPFTWDA---VRY--NGKLIAYPIAVEALSLIYNKDLLPN- 126 (475)
T ss_dssp SCSEEEEEGGGHHHHHHTTCBCCCCCCH--HH---HTTBCHHHHHH---TEE--TTEECSEEEEEECCEEEEETTTCSS-
T ss_pred CCcEEEECCccHHHHHHCCCcccCCccH--hH---HhhcCHHhHhh---eEE--CCEEEEeeeeccceEEEEehHHhcc-
Confidence 5999999989999999999999999641 11 22333444432 234 4999999999999999999999996
Q ss_pred CCCCCCCHHHhcCc--cc--cCceeeecCh--hHHHHHHHHHcCCCCCCCCh------hhhhc-cchHHHHHHHHHHhhh
Q 016927 121 NLAPIEDWKDLWRP--EL--AGRISMVNSP--REVIGSVLKYMGASYNSNNI------DLQVA-GGKISVQQNLALLANQ 187 (380)
Q Consensus 121 g~~~p~sW~dL~~~--~~--~gki~~~~~~--~~~~~~al~~~G~~~~~~~~------~~~~~-~~~~~~~~~L~~l~~~ 187 (380)
+|+||++|++. ++ +|+..+.-.. ...+...+...|......+. ...+. ....++.+.+.++...
T Consensus 127 ---~P~Twdel~~~a~~l~~~g~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~l~~~ 203 (475)
T 3n94_A 127 ---PPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPLIAADGGYAFKYENGKYDIKDVGVDNAGAKAGLTFLVDLIKN 203 (475)
T ss_dssp ---CCSBGGGHHHHHHHHHTTTCEEECCCCSSHHHHHHHHHHTTCEEEEEETTEEEEEEEESSSHHHHHHHHHHHHHHHT
T ss_pred ---CCCCHHHHHHHHHHHHhCCCceEEeecCCchHHHHHHHhcCCceeecCCCCccccccccCCHHHHHHHHHHHHHHhc
Confidence 89999999985 33 3554443211 22222334556654321110 00011 1144666777776542
Q ss_pred --cc-cccchhHHHHhHcCCEEEEEechhcHHHHHHcCCCcEEE-ccCC-----CccceeeeEEEeCCCCCcccccCCCC
Q 016927 188 --AR-LFDSTHYLKAFGIGDVWVAVGWSSDVLPAVKRMSNVAVV-VPKS-----GASLWADLWAIPAASRLETKQIGGRV 258 (380)
Q Consensus 188 --v~-~~~~~~~~~~~~~Gev~~~~~~s~~~~~~~~~~~~i~~~-~P~e-----G~~~~~d~~~I~k~s~~~~~~~~~~~ 258 (380)
+. ....++..+.|.+|+++|.+.++..+..+.+.+.+++++ +|.. +...+..+++|+++++|++
T Consensus 204 g~~~~~~~~~~~~~~f~~G~~am~~~g~~~~~~~~~~~~~~~~~~~P~~~g~~~~~~~g~~~~~I~~~s~~~e------- 276 (475)
T 3n94_A 204 KHMNADTDYSIAEAAFNKGETAMTINGPWAWSNIDTSKVNYGVTVLPTFKGQPSKPFVGVLSAGINAASPNKE------- 276 (475)
T ss_dssp TSSCTTCCHHHHHHHHHTTCEEEEEECGGGHHHHHHHTCCEEEECCCBBTTBCCCCEEEEEEEEEBTTCTTHH-------
T ss_pred CCCCCCCChhHHHHHHHcCCEEEEecCccccChhhhcCCceEEEeCCCCCCCCCCccccceEEEEECCCCCHH-------
Confidence 11 123346778999999999999998887777777788886 5742 2345678899999999998
Q ss_pred CCChHHHHHHHH-HHhhHHhhchhhhh
Q 016927 259 RGPSPLIHQWIE-FCLQTARALPFKQE 284 (380)
Q Consensus 259 ~~~~~~A~~fi~-fllspe~~~~~~~~ 284 (380)
+|++||+ |+++++.|..+...
T Consensus 277 -----~A~~fi~~~l~s~e~~~~~~~~ 298 (475)
T 3n94_A 277 -----LAKEFLENYLLTDEGLEAVNKD 298 (475)
T ss_dssp -----HHHHHHHHTTSSHHHHHHHHHH
T ss_pred -----HHHHHHHHHhcCHHHHHHHHhh
Confidence 9999996 99999999998864
No 32
>3iot_A Maltose-binding protein, huntingtin fusion protei; HTT-EX1, HD, sugar transport, transport, apoptos disease mutation, nucleus; 3.50A {Escherichia coli k-12} PDB: 3io6_A 3io4_A 3ior_A 3iou_A 3iov_A 3iow_A
Probab=99.87 E-value=1.1e-21 Score=196.69 Aligned_cols=224 Identities=16% Similarity=0.148 Sum_probs=153.4
Q ss_pred CccEEEeCcHHHHHHHHcCcccccccCCCccccCCCChhhHHHHhhhCCCccCCCCCEEEeecccceeEEEEeccccccC
Q 016927 41 AADLVSVGDSWLSFAIKKRLIEPIAGAEDQDWFKCLSHKWKVYLRRNDAGEIDPRGKIWAAPYRWGTMVIAYKKSKFRKH 120 (380)
Q Consensus 41 ~~Dvv~~~~~~~~~~~~~gll~pld~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~Y~vP~~~~~~gi~Yn~d~~~~~ 120 (380)
.|||+.++..++..+++.|+|.||+... +. .+++.+.+++. ..+ +|+.||+|+..++.+|+||+|+|++
T Consensus 56 ~pDv~~~~~~~~~~~~~~G~l~~L~~~~--~~---~~~~~~~~~~~---~~~--dGk~ygvP~~~~~~~l~YNkdl~~~- 124 (449)
T 3iot_A 56 GPDIIFWAHDRFGGYAQSGLLAEITPDK--AF---QDKLYPFTWDA---VRY--NGKLIAYPIAVEALSLIYNKDLLPN- 124 (449)
T ss_dssp SCSEEEEETTTHHHHHHTTCBCCCCCCH--HH---HTTBCHHHHTT---SBS--SSCBCCEEEEEEECEEEEETTTCSS-
T ss_pred CCCEEEeCchhHHHHHhCCCcccCCcch--hh---hhccCHHHHHh---ceE--CCEEEEeccccceeEEEEehHHhcc-
Confidence 5999999888999999999999999641 11 23334444432 234 5999999999999999999999996
Q ss_pred CCCCCCCHHHhcCc--cc--cCceeeecCh--hHHHHHHHHHcCCCCCCCCh------hhhhc-cchHHHHHHHHHHhhh
Q 016927 121 NLAPIEDWKDLWRP--EL--AGRISMVNSP--REVIGSVLKYMGASYNSNNI------DLQVA-GGKISVQQNLALLANQ 187 (380)
Q Consensus 121 g~~~p~sW~dL~~~--~~--~gki~~~~~~--~~~~~~al~~~G~~~~~~~~------~~~~~-~~~~~~~~~L~~l~~~ 187 (380)
+|+||+||++. ++ +|+..+.-.. ...+...+...|+.....+. ...+. ....++.+.+.++...
T Consensus 125 ---~P~Twdel~~~a~~l~~~g~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~l~~~ 201 (449)
T 3iot_A 125 ---PPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPLIAADGGYAFKYENGKYDIKDVGVDNAGAKAGLTFLVDLIKN 201 (449)
T ss_dssp ---CCSBGGGHHHHHHHHHTTTCBSCCCCCSCHHHHHHHHTTTTCBSSEECSSCEETTCCBSSSHHHHHHHHHHHHHHHH
T ss_pred ---CCCCHHHHHHHHHHHHhCCCceEEeecCchHHHHHHHHhhCCeeeccccccccccccccCCHHHHHHHHHHHHHHhc
Confidence 89999999985 22 3544332111 12222233444554321110 00111 1244666777666543
Q ss_pred --cc-cccchhHHHHhHcCCEEEEEechhcHHHHHHcCCCcEEE-ccCC-C----ccceeeeEEEeCCCCCcccccCCCC
Q 016927 188 --AR-LFDSTHYLKAFGIGDVWVAVGWSSDVLPAVKRMSNVAVV-VPKS-G----ASLWADLWAIPAASRLETKQIGGRV 258 (380)
Q Consensus 188 --v~-~~~~~~~~~~~~~Gev~~~~~~s~~~~~~~~~~~~i~~~-~P~e-G----~~~~~d~~~I~k~s~~~~~~~~~~~ 258 (380)
+. ..+.++..+.|.+|+++|.+.++..+..+.+.+.+++++ +|.. | ...+..+++|+++++|++
T Consensus 202 g~~~~~~~~~~~~~~f~~G~~a~~~~g~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~I~~~s~~~e------- 274 (449)
T 3iot_A 202 KHMNADTDYSIAEAAFNKGETAMTINGPWAWSNIDTSKVNYGVTVLPTFKGQPSKPFVGVLSAGINAASPNKE------- 274 (449)
T ss_dssp TSSCTTCCHHHHHHHHHTTCBSEEEECGGGHHHHHHHTCCEEEECCCEETTEECCCEEEEEEEEEBTTCSCHH-------
T ss_pred CCCCCCCChhHHHHHHHcCCeeEEeccccchhhHHhcCCceeEEeCCCCCCCCCCceeceeEEEEECCCCCHH-------
Confidence 11 123346778999999999999998887777777788886 5742 2 345678899999999998
Q ss_pred CCChHHHHHHH-HHHhhHHhhchhhhhhcCCCCC
Q 016927 259 RGPSPLIHQWI-EFCLQTARALPFKQEVIPGASP 291 (380)
Q Consensus 259 ~~~~~~A~~fi-~fllspe~~~~~~~~~~~~~~p 291 (380)
+|++|| +|++++|.+..++.. .++..|
T Consensus 275 -----~A~~fl~~~l~s~e~~~~~~~~-~~~~~p 302 (449)
T 3iot_A 275 -----LAKEFLENYLLTDEGLEAVNKD-KPLGAV 302 (449)
T ss_dssp -----HHHHHHHHTTSSHHHHHHHHHH-SCCSEE
T ss_pred -----HHHHHHHHHhcCHHHHHHHHhh-cccCCc
Confidence 999999 599999999998865 333344
No 33
>2b3f_A Glucose-binding protein; protein-carbohydrate complex, periplasmic binding protein, galactose, GBP, sugar binding protein; HET: GAL; 1.56A {Thermus thermophilus HB27} PDB: 2b3b_A*
Probab=99.87 E-value=9.5e-22 Score=193.88 Aligned_cols=246 Identities=11% Similarity=0.101 Sum_probs=163.7
Q ss_pred CceEEEEEEccc--HHHHHHhcccchhHhhcCCCCCCCccEEEeC-cHHH-HHHHHcCcccccccCCCccccCCCC-hhh
Q 016927 6 KRLKFQMNLCAS--IDGIVNNLSVPFNKVKAKSAPYMAADLVSVG-DSWL-SFAIKKRLIEPIAGAEDQDWFKCLS-HKW 80 (380)
Q Consensus 6 ~~v~v~~~~~gs--~~~~~~~~~~~~~kl~ag~~~~~~~Dvv~~~-~~~~-~~~~~~gll~pld~~~~~~~~~~~~-~~~ 80 (380)
++|+|+.+..+. +++..+++. +.+.+|. .|||+.+. ..++ ..+++.|+|+||+... .. .++. .+.
T Consensus 29 p~i~V~~~~~~~~~~~~~~~kl~---~~~~~g~----~pDv~~~~~~~~~~~~~~~~g~l~~L~~~~--~~-~~~~~~~~ 98 (400)
T 2b3f_A 29 PGVEVINATVTGGAGVNARAVLK---TRMLGGD----PPDTFQVHAGMELIGTWVVANRMEDLSALF--RQ-EGWLQAFP 98 (400)
T ss_dssp TTCEEEEEECCCGGGHHHHHHHH---HHHHTTC----CCSEEEEETTHHHHHTTTTTTCBCCCHHHH--HH-HTHHHHSC
T ss_pred CCceEEEEecCCCcchhHHHHHH---HHHhCCC----CCCEEeecCCchHHHHHHhCCCCcCchHHH--Hh-CchhhhcC
Confidence 467887777654 466666642 2233443 48999998 7888 9999999999998631 11 1221 222
Q ss_pred HHHHhhhCCCccCCCCCEEEeeccc-ceeEEEEeccccccCCCCCCCCHHHhcCc--ccc--Cc-eeeecCh-h---HHH
Q 016927 81 KVYLRRNDAGEIDPRGKIWAAPYRW-GTMVIAYKKSKFRKHNLAPIEDWKDLWRP--ELA--GR-ISMVNSP-R---EVI 150 (380)
Q Consensus 81 ~~~~~~~~~~~~d~~g~~Y~vP~~~-~~~gi~Yn~d~~~~~g~~~p~sW~dL~~~--~~~--gk-i~~~~~~-~---~~~ 150 (380)
+..++. ..+ +|+.||+|+.. ++.+++||+|+|+++|+++|+||+||++. +++ |+ ..+.-.. . ..+
T Consensus 99 ~~~~~~---~~~--dG~~y~vP~~~~~~~~l~Ynkdl~~~aGl~~P~Twdel~~~~~~l~~~g~~~~~~~~~~~~~~~~~ 173 (400)
T 2b3f_A 99 KGLIDL---ISY--KGGIWSVPVNIHRSNVMWYLPAKLKGWGVNPPRTWDKFLATCQTLKQKGLEAPLALGENWTQQHLW 173 (400)
T ss_dssp HHHHHH---HEE--TTEECCEECCBEESCEEEECHHHHHHTTCCCCSSHHHHHHHHHHHHHTTCSCCEECCSHHHHHHHH
T ss_pred Hhhhhh---eEE--CCEEEEEEEeeccCceEEEcHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCcCCeEeCCcchHhHHH
Confidence 333332 134 49999999998 88999999999999999999999999985 333 55 4442221 1 122
Q ss_pred HHHH-HHcCCC---------CCCCChhhhhccchHHHHHHHHHHhhhcc----cccchhHHHHhHcCCEEEEEechhcHH
Q 016927 151 GSVL-KYMGAS---------YNSNNIDLQVAGGKISVQQNLALLANQAR----LFDSTHYLKAFGIGDVWVAVGWSSDVL 216 (380)
Q Consensus 151 ~~al-~~~G~~---------~~~~~~~~~~~~~~~~~~~~L~~l~~~v~----~~~~~~~~~~~~~Gev~~~~~~s~~~~ 216 (380)
...+ ...|.+ ..-.+++ ..++.+++.++...+. ....++..+.|.+|+++|.+.++....
T Consensus 174 ~~~~~~~~G~~~~~~~~~~~~~~~~~~------~~~al~~~~~l~~~~~~~~~~~~~~~~~~~f~~G~~am~~~g~w~~~ 247 (400)
T 2b3f_A 174 ESVALAVLGPDDWNNLWNGKLKFTDPK------AVRAWEVFGRVLDCANKDAAGLSWQQAVDRVVQGKAAFNIMGDWAAG 247 (400)
T ss_dssp HHHHHHHHHHHHHHHHHTTSSCTTSHH------HHHHHHHHHHHHTTBCTTGGGCCHHHHHHHHHHTSCSEEECCTHHHH
T ss_pred HHHHHhhcCHHHHHHHhcCccccCCHH------HHHHHHHHHHHHHhcCCCccCCCHHHHHHHHhCCceEEEEeccccHh
Confidence 2222 223422 1111222 4466777777764332 122346778999999999997766554
Q ss_pred HHHHc-----CCCcEEE-ccC-CCc-cceeeeEEEeCCCCCcccccCCCCCCChHHHHHHHHHHhhHHhhchhhhh
Q 016927 217 PAVKR-----MSNVAVV-VPK-SGA-SLWADLWAIPAASRLETKQIGGRVRGPSPLIHQWIEFCLQTARALPFKQE 284 (380)
Q Consensus 217 ~~~~~-----~~~i~~~-~P~-eG~-~~~~d~~~I~k~s~~~~~~~~~~~~~~~~~A~~fi~fllspe~~~~~~~~ 284 (380)
.+.+. +.+++++ +|. +|. ..+.++++|+++++|++ +|++||+|+++++.|..++..
T Consensus 248 ~~~~~~~~~~~~~~~~~~~P~~~g~~~~~~~~~~i~~~s~~~e------------~A~~fi~~l~s~e~q~~~~~~ 311 (400)
T 2b3f_A 248 YMTTTLKLKPGTDFAWAPSPGTQGVFMMLSDSFGLPKGAKNRQ------------NAINWLRLVGSKEGQDTSNPL 311 (400)
T ss_dssp HHHHTTCCCBTTTBEEEECTTCTTEEEEECEEECCBTTCTTHH------------HHHHHHHHHTSHHHHHHHHHH
T ss_pred hhhhhhcCCCCCCeEEEeCCCCCCceecccceEEEeCCCCCHH------------HHHHHHHHHcCHHHHHHHHHh
Confidence 44443 4578876 774 343 34567899999999998 999999999999999988764
No 34
>1eu8_A Trehalose/maltose binding protein; protein-carbohydrate complex, MBP 2 fold, ABC transporter fold, thermophilic protein; HET: TRE; 1.90A {Thermococcus litoralis} SCOP: c.94.1.1
Probab=99.87 E-value=2.6e-21 Score=191.02 Aligned_cols=255 Identities=17% Similarity=0.195 Sum_probs=163.2
Q ss_pred CCceEEEEEEcccHH-HHHHhcccchhHhhcCCCCCCCc-cEEEeCcHHHHHHHHcCcccccccCCCccccCCCChhhHH
Q 016927 5 GKRLKFQMNLCASID-GIVNNLSVPFNKVKAKSAPYMAA-DLVSVGDSWLSFAIKKRLIEPIAGAEDQDWFKCLSHKWKV 82 (380)
Q Consensus 5 ~~~v~v~~~~~gs~~-~~~~~~~~~~~kl~ag~~~~~~~-Dvv~~~~~~~~~~~~~gll~pld~~~~~~~~~~~~~~~~~ 82 (380)
+++|+|+++..+..+ +..+++. +.+.+|. .| ||+.+...++..+++.|+|.||+.......+ ..+++.+.
T Consensus 31 ~p~i~V~~~~~~~~~~~~~~kl~---~~~aag~----~P~Dv~~~~~~~~~~~~~~g~l~~L~~~~~~~~~-~~~~~~~~ 102 (409)
T 1eu8_A 31 YPGVTVELKRQATDTEQRRLDLV---NALRGKS----SDPDVFLMDVAWLGQFIASGWLEPLDDYVQKDNY-DLSVFFQS 102 (409)
T ss_dssp STTCEEEEEECCSSHHHHHHHHH---HHHTTTC----SSEEEEEEETTTHHHHHHHTCBCCSHHHHHHHTC-CGGGBCHH
T ss_pred CCCeEEEEEECChhhhHHHHHHH---HHHhcCC----CCCCEEEEccccHHHHHHCCCeEechhhcccccc-chhhhhHH
Confidence 347888887776432 3355532 2233443 35 9999988899999999999999863100000 23444454
Q ss_pred HHhhhCCC-ccCCCCCEEEeecccceeEEEEeccccccCCC-CCCCCHHHhcCc--ccc--C------ceeee--cChhH
Q 016927 83 YLRRNDAG-EIDPRGKIWAAPYRWGTMVIAYKKSKFRKHNL-APIEDWKDLWRP--ELA--G------RISMV--NSPRE 148 (380)
Q Consensus 83 ~~~~~~~~-~~d~~g~~Y~vP~~~~~~gi~Yn~d~~~~~g~-~~p~sW~dL~~~--~~~--g------ki~~~--~~~~~ 148 (380)
.++. . .+ +|+.||+|+..++.+|+||+|+|+++|+ ++|+||+||.+. +++ | ..++. .....
T Consensus 103 ~~~~---~~~~--dGk~ygvP~~~~~~~l~Ynkdlf~~aGl~~~P~Twdel~~~a~~l~~~~~~g~~~~~g~~~~~~~~~ 177 (409)
T 1eu8_A 103 VINL---ADKQ--GGKLYALPVYIDAGLLYYRKDLLEKYGYSKPPETWQELVEMAQKIQSGERETNPNFWGFVWQGKQYE 177 (409)
T ss_dssp HHHH---HTEE--TTEECCEEEEEEECEEEEEHHHHHHTTCCSCCSBHHHHHHHHHHHHHHHTTTCTTCEEEECCCSSSH
T ss_pred HHHH---hccC--CCEEEEEeeeccceEEEEEHHHHHhcCCCCCCCCHHHHHHHHHHHHhcccCCCCCcceEEEecCCCc
Confidence 4432 2 34 4999999999999999999999999995 899999999874 221 1 23332 21111
Q ss_pred ----HHHHHHHHcCCCCCC-CChh--hhhc-cchHHHHHHHHHHh-hh--c-----ccccchhHHHHhHcCCEEEEEech
Q 016927 149 ----VIGSVLKYMGASYNS-NNID--LQVA-GGKISVQQNLALLA-NQ--A-----RLFDSTHYLKAFGIGDVWVAVGWS 212 (380)
Q Consensus 149 ----~~~~al~~~G~~~~~-~~~~--~~~~-~~~~~~~~~L~~l~-~~--v-----~~~~~~~~~~~~~~Gev~~~~~~s 212 (380)
.+...+...|+.+.+ .+.. ..+. ....++.+.+.+|. .. + ..+...+..+.|.+|+++|.+.++
T Consensus 178 ~~~~~~~~~~~~~Gg~~~~~~~g~~~~~~~~~~~~~al~~~~~l~~~~g~~~~~~~~~~~~~~~~~~f~~Gk~am~~~g~ 257 (409)
T 1eu8_A 178 GLVCDFVEYVYSNGGSLGEFKDGKWVPTLNKPENVEALQFMVDLIHKYKISPPNTYTEMTEEPVRLMFQQGNAAFERNWP 257 (409)
T ss_dssp HHHHHHHHHHHTTTCCSEEEETTEEEECTTCHHHHHHHHHHHHHHHTSCCSCGGGGTTCCHHHHHHHHHTTCEEEEEECT
T ss_pred chhhHHHHHHHhcCCceeccccCccceeecCHHHHHHHHHHHHHHhhcCcCCCcccccCCHHHHHHHHhCCCEEEEecCH
Confidence 223334556766432 2221 1111 12345566666664 21 1 112224567899999999999988
Q ss_pred hcHHHHHHc----CCCcEEE-ccC--CC---ccceeeeEEEeCCCCCcccccCCCCCCChHHHHHHHHHHhhHHhhchhh
Q 016927 213 SDVLPAVKR----MSNVAVV-VPK--SG---ASLWADLWAIPAASRLETKQIGGRVRGPSPLIHQWIEFCLQTARALPFK 282 (380)
Q Consensus 213 ~~~~~~~~~----~~~i~~~-~P~--eG---~~~~~d~~~I~k~s~~~~~~~~~~~~~~~~~A~~fi~fllspe~~~~~~ 282 (380)
.....+... ..+++++ +|. .| +.....+++|+++|+|++ +|++||+|+++++.|..++
T Consensus 258 w~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~gg~~~~i~~~s~~~e------------~A~~fl~~l~s~e~~~~~~ 325 (409)
T 1eu8_A 258 YAWGLHNADDSPVKGKVGVAPLPHFPGHKSAATLGGWHIGISKYSDNKA------------LAWEFVKFVESYSVQKGFA 325 (409)
T ss_dssp HHHHHHTSTTCTTTTCEEEECCCBCTTSCCCCBEEEEEEEEBTTCSCHH------------HHHHHHHHHTSHHHHHHHH
T ss_pred HHhhccCCCCccccCceEEEeCCCCCCCCcccccCceeEEecCCCCCHH------------HHHHHHHHHhCHHHHHHHH
Confidence 766555432 2357765 563 22 233456799999999998 9999999999999998887
Q ss_pred hh
Q 016927 283 QE 284 (380)
Q Consensus 283 ~~ 284 (380)
..
T Consensus 326 ~~ 327 (409)
T 1eu8_A 326 MN 327 (409)
T ss_dssp HH
T ss_pred Hh
Confidence 64
No 35
>4hs7_A Bacterial extracellular solute-binding protein, P; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: P33; 2.60A {Staphylococcus aureus subsp}
Probab=99.87 E-value=1.4e-20 Score=186.66 Aligned_cols=219 Identities=13% Similarity=0.070 Sum_probs=146.7
Q ss_pred CCccEEEeCcHHHHHHHHcCcccccccCCCccccCCCChhhHHHHhhhCCCccCCCCCEEEeecccceeEEEEecccccc
Q 016927 40 MAADLVSVGDSWLSFAIKKRLIEPIAGAEDQDWFKCLSHKWKVYLRRNDAGEIDPRGKIWAAPYRWGTMVIAYKKSKFRK 119 (380)
Q Consensus 40 ~~~Dvv~~~~~~~~~~~~~gll~pld~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~Y~vP~~~~~~gi~Yn~d~~~~ 119 (380)
..|||+.+...++..++..|++.||+... ..+ +++.+..++. ..+ +|+.||+|+..++.+|+||+|+|++
T Consensus 93 ~~PDv~~~~~~~~~~~~~~g~l~~l~~~~--~~~---~~~~~~~~~~---~~~--dGk~y~vP~~~~~~~l~Ynkdl~~~ 162 (420)
T 4hs7_A 93 KGPDIFFLAHDNTGSAYLQGLAAEIKLSK--DEL---KGFNKQALKA---MNY--DNKQLALPAIVETTALFYNKKLVKN 162 (420)
T ss_dssp CCCSEEEEEGGGHHHHHHTTCEECCCCCH--HHH---TTBCHHHHHH---TEE--TTEECEEEEEEECCEEEEETTTCCS
T ss_pred CCCcEEEeCchHHHHHHHcCCccccccCH--HhH---hhcCHHHHHh---CeE--CCEEEEEeccccceEEEEEcccccc
Confidence 35999999999999999999999998642 223 3333444432 235 4999999999999999999999997
Q ss_pred CCCCCCCCHHHhcCc--c----ccCceeeecChhHHH--HHHHHHcCCCCCCCCh------hhhhc-cchHHHHHHHHHH
Q 016927 120 HNLAPIEDWKDLWRP--E----LAGRISMVNSPREVI--GSVLKYMGASYNSNNI------DLQVA-GGKISVQQNLALL 184 (380)
Q Consensus 120 ~g~~~p~sW~dL~~~--~----~~gki~~~~~~~~~~--~~al~~~G~~~~~~~~------~~~~~-~~~~~~~~~L~~l 184 (380)
+|+||+||.+. + ..+.+++.......+ ...+...|..+...+. +..+. ....++.+.+.++
T Consensus 163 ----~p~Twdel~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~al~~~~~l 238 (420)
T 4hs7_A 163 ----APQTLEEVEANAAKLTDSKKKQYGMLFDAKNFYFNYPFLFGNDDYIFKKNGSEYDIHQLGLNSKHVVKNAERLQKW 238 (420)
T ss_dssp ----CCCBHHHHHHHHHHHCBTTTTBEEEECCTTSHHHHHHHHCCSSCCSEEESSSCEEEEEECTTCHHHHHHHHHHHHH
T ss_pred ----ccccchhhHHHHHHHHhccCCceeeccCCCCccchhhhhhhccchhhhhccccccccccccCCHHHHHHHHHHHHH
Confidence 89999999863 2 224455443322221 1222233433211111 00000 0133445555555
Q ss_pred hhh--cc-cccchhHHHHhHcCCEEEEEechhcHHHHHHc-CCCcEEE-ccCCC-----ccceeeeEEEeCCCCCccccc
Q 016927 185 ANQ--AR-LFDSTHYLKAFGIGDVWVAVGWSSDVLPAVKR-MSNVAVV-VPKSG-----ASLWADLWAIPAASRLETKQI 254 (380)
Q Consensus 185 ~~~--v~-~~~~~~~~~~~~~Gev~~~~~~s~~~~~~~~~-~~~i~~~-~P~eG-----~~~~~d~~~I~k~s~~~~~~~ 254 (380)
... +. ....+...+.|.+|+++|.+.++..+..+++. +.+++++ +|..+ +..+..+++|+++++|++
T Consensus 239 ~~~g~~~~~~~~~~~~~~f~~G~~am~~~g~~~~~~~~~~~~~~~g~~~~P~~~g~~~~~~~g~~~~~I~~~sk~~e--- 315 (420)
T 4hs7_A 239 YDKGYLPKAATHDVMIGLFKEGKVGQFVTGPWNINEYQETFGKDLGVTTLPTDGGKPMKPFLGVRGWYLSEYSKHKY--- 315 (420)
T ss_dssp HHTTSSCSSCCHHHHHHHHHTTCEEEEEECSTTHHHHHHHHGGGEEEECCCBSSSSBCCCEEEEEEEEEETTCSCHH---
T ss_pred HHcCCCCcccccchhhhhhccCceEEEEechHHHHHHHHhcCCceEEEEccCCCCCCCccccccceEEecCCCCCHH---
Confidence 322 11 11234677899999999999988877666543 4577775 67432 345678899999999998
Q ss_pred CCCCCCChHHHHHHHHHHhhHHhhchhhhh
Q 016927 255 GGRVRGPSPLIHQWIEFCLQTARALPFKQE 284 (380)
Q Consensus 255 ~~~~~~~~~~A~~fi~fllspe~~~~~~~~ 284 (380)
+|++||+|++++|.|..+++.
T Consensus 316 ---------aA~~fi~~l~s~e~~~~~~~~ 336 (420)
T 4hs7_A 316 ---------WAKDLMLYITSKDTLQKYTDE 336 (420)
T ss_dssp ---------HHHHHHHHHTSHHHHHHHHHH
T ss_pred ---------HHHHHHHHHCCHHHHHHHHHH
Confidence 999999999999999999876
No 36
>4hw8_A Bacterial extracellular solute-binding protein, P; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MAL; 2.25A {Staphylococcus aureus subsp} PDB: 4hs7_A*
Probab=99.86 E-value=7.7e-21 Score=188.42 Aligned_cols=224 Identities=13% Similarity=0.064 Sum_probs=154.0
Q ss_pred CccEEEeCcHHHHHHHHcCcccccccCCCccccCCCChhhHHHHhhhCCCccCCCCCEEEeecccceeEEEEeccccccC
Q 016927 41 AADLVSVGDSWLSFAIKKRLIEPIAGAEDQDWFKCLSHKWKVYLRRNDAGEIDPRGKIWAAPYRWGTMVIAYKKSKFRKH 120 (380)
Q Consensus 41 ~~Dvv~~~~~~~~~~~~~gll~pld~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~Y~vP~~~~~~gi~Yn~d~~~~~ 120 (380)
.|||+.++..++..+++.|+|.||+... ...+++.+.+++. ..+ +|+.|++|+..++.+|+||+|+|++
T Consensus 94 ~pDv~~~~~~~~~~~~~~g~l~~L~~~~-----~~~~~~~~~~~~~---~~~--dG~~y~vP~~~~~~~l~Ynkdl~~~- 162 (420)
T 4hw8_A 94 GPDIFFLAHDNTGSAYLQGLAAEIKLSK-----DELKGFNKQALKA---MNY--DNKQLALPAIVETTALFYNKKLVKN- 162 (420)
T ss_dssp SCSEEEEEGGGHHHHHHTTCEECCCCCH-----HHHTTBCHHHHHH---TEE--TTEECEEEEEEECCEEEEETTTCCS-
T ss_pred CCCEEEECcchHHHHHhcCCcccCCcch-----hhhhhcCHHHHHh---eEE--CCEEEEeeeeccceEEEEEhhhhhh-
Confidence 5999999999999999999999999531 1233444444442 234 4999999999999999999999998
Q ss_pred CCCCCCCHHHhcCc--ccc----CceeeecCh--hHHHHHHHHHcCCCCCCCCh------hhhhc-cchHHHHHHHHHHh
Q 016927 121 NLAPIEDWKDLWRP--ELA----GRISMVNSP--REVIGSVLKYMGASYNSNNI------DLQVA-GGKISVQQNLALLA 185 (380)
Q Consensus 121 g~~~p~sW~dL~~~--~~~----gki~~~~~~--~~~~~~al~~~G~~~~~~~~------~~~~~-~~~~~~~~~L~~l~ 185 (380)
.|+||+||++. +++ +.+++.... ...+...+...|..+...+. ...+. ....++.+++.+|.
T Consensus 163 ---~P~Twdel~~~~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~l~ 239 (420)
T 4hw8_A 163 ---APQTLEEVEANAAKLTDSKKKQYGMLFDAKNFYFNYPFLFGNDDYIFKKNGSEYDIHQLGLNSKHVVKNAERLQKWY 239 (420)
T ss_dssp ---CCCBHHHHHHHHHHHCBTTTTBEEEECCTTSHHHHHHHHCCTTCCSEEESSSSEEEEEECTTCHHHHHHHHHHHHHH
T ss_pred ---CCCCHHHHHHHHHHHhccCCceeEEEecCccHHHHHHHHHhcCCceeccCCCcccccccccCCHHHHHHHHHHHHHH
Confidence 49999999975 222 234443222 22333334455654422111 00111 12445667777764
Q ss_pred hh--cc-cccchhHHHHhHcCCEEEEEechhcHHHHHHc-CCCcEEE-ccCC-C----ccceeeeEEEeCCCCCcccccC
Q 016927 186 NQ--AR-LFDSTHYLKAFGIGDVWVAVGWSSDVLPAVKR-MSNVAVV-VPKS-G----ASLWADLWAIPAASRLETKQIG 255 (380)
Q Consensus 186 ~~--v~-~~~~~~~~~~~~~Gev~~~~~~s~~~~~~~~~-~~~i~~~-~P~e-G----~~~~~d~~~I~k~s~~~~~~~~ 255 (380)
.. +. ....++..+.|.+|+++|.+.++..+..+.+. +.+++++ +|.. | ...+..+++|+++++|++
T Consensus 240 ~~g~~~~~~~~~~~~~~f~~G~~a~~~~~~~~~~~~~~~~~~~~~~~~~P~~~g~~~~~~~~~~~~~I~~~s~~~e---- 315 (420)
T 4hw8_A 240 DKGYLPKAATHDVMIGLFKEGKVGQFVTGPWNINEYQETFGKDLGVTTLPTDGGKPMKPFLGVRGWYLSEYSKHKY---- 315 (420)
T ss_dssp HTTSSCSSCCHHHHHHHHHTTCEEEEEECSTTHHHHHHHHGGGEEEECCCEETTEECCCEEEEEEEEEETTCSCHH----
T ss_pred HcCCCCCCCCcchHHHHhhcCceEEEEeCCccHHHHHhhcCCCeEEEeCCCCCCCCCCcccccceEEEeCCCCCHH----
Confidence 32 21 12235677899999999999998887766655 6678876 5642 2 345667899999999998
Q ss_pred CCCCCChHHHHHHHHHHhhHHhhchhhhhhcCCCCCC
Q 016927 256 GRVRGPSPLIHQWIEFCLQTARALPFKQEVIPGASPS 292 (380)
Q Consensus 256 ~~~~~~~~~A~~fi~fllspe~~~~~~~~~~~~~~p~ 292 (380)
+|++||+|++++|.|..+++. .++ .|.
T Consensus 316 --------~A~~fl~~l~s~e~q~~~~~~-~g~-~P~ 342 (420)
T 4hw8_A 316 --------WAKDLMLYITSKDTLQKYTDE-MSE-ITG 342 (420)
T ss_dssp --------HHHHHHHHTTSHHHHHHHHHH-HCC-CBS
T ss_pred --------HHHHHHHHHhCHHHHHHHHHh-cCC-CCC
Confidence 999999999999999998875 343 443
No 37
>2gh9_A Maltose/maltodextrin-binding protein; MBP, maltose binding protein, thermoph protein, periplasmic binding protein, sugar binding protein; HET: MLR; 1.95A {Thermus thermophilus}
Probab=99.86 E-value=3.9e-21 Score=188.46 Aligned_cols=246 Identities=15% Similarity=0.135 Sum_probs=165.3
Q ss_pred ceEEEEEEcccHHHHHHhcccchhHhhcCCCCCCCccEEEe-CcHHHHHHHHcCcccccccCCCccccCCCChhhHHHHh
Q 016927 7 RLKFQMNLCASIDGIVNNLSVPFNKVKAKSAPYMAADLVSV-GDSWLSFAIKKRLIEPIAGAEDQDWFKCLSHKWKVYLR 85 (380)
Q Consensus 7 ~v~v~~~~~gs~~~~~~~~~~~~~kl~ag~~~~~~~Dvv~~-~~~~~~~~~~~gll~pld~~~~~~~~~~~~~~~~~~~~ 85 (380)
+|+|+++..+ .++..+++. +.+.+|. .|||+.. +..++..+++.|+|.||+.... +.+ .+++.+..++
T Consensus 29 ~i~V~~~~~~-~~~~~~kl~---~~~~~g~----~pDv~~~~~~~~~~~~~~~g~l~~L~~~~~-~~~--~~~~~~~~~~ 97 (386)
T 2gh9_A 29 GTKVEVVEVP-FAEIKQKFI---LGAPQGQ----AADLVVTVPHDWVGEMAQAGVLEPVGKYVT-QAY--LADLQGVAVE 97 (386)
T ss_dssp SCCEEEEECC-HHHHHHHHH---HHGGGTC----SCSEEEEEEGGGHHHHHHTTCBCCCGGGSC-HHH--HHHBCHHHHH
T ss_pred CCEEEEEeCC-hHHHHHHHH---HHHhCCC----CCcEEEecCcchHHHHHhCCceecCchhhc-hhh--HhhccHhhHh
Confidence 6777777664 356666642 1233332 5999988 7788999999999999996421 000 2233344443
Q ss_pred hhCCCccCCCCCEEEeecccceeEEEEeccccccCCCCCCCCHHHhcCc--ccc--CceeeecChh--HHHHHHHHHcCC
Q 016927 86 RNDAGEIDPRGKIWAAPYRWGTMVIAYKKSKFRKHNLAPIEDWKDLWRP--ELA--GRISMVNSPR--EVIGSVLKYMGA 159 (380)
Q Consensus 86 ~~~~~~~d~~g~~Y~vP~~~~~~gi~Yn~d~~~~~g~~~p~sW~dL~~~--~~~--gki~~~~~~~--~~~~~al~~~G~ 159 (380)
. ..+ +|+.||+|+..++.+|+||+|+|++ +|+||+||++. +++ |++.+..... ..+...+...|.
T Consensus 98 ~---~~~--dG~~y~vP~~~~~~~l~YNkdl~~~----~P~Twdel~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~Gg 168 (386)
T 2gh9_A 98 A---FTF--GGRLMGLPAFAESVALIYNKKYVKE----PPRTWEEFLALAQKLTTGATFGFLYNIGDPYFNFGFFKAFGA 168 (386)
T ss_dssp H---TEE--TTEECSEEEEEECCEEEEETTTCSS----CCSSHHHHHHHHHHHCSSSCEEEECCTTCHHHHHHHHHHHTC
T ss_pred h---EEE--CCEEEEeccccceeEEEEehhhhcc----CCCCHHHHHHHHHHhhhCCEEEEEeecCchHHHHHHHHHcCC
Confidence 2 234 4999999999999999999999997 89999999985 443 6655543221 122233455676
Q ss_pred C-CC--CCCh-----hhhhc-cchHHHHHHHHHH-hhh--cc-cccchhHHHHhHcCCEEEEEechhcHHHHHHcCCCcE
Q 016927 160 S-YN--SNNI-----DLQVA-GGKISVQQNLALL-ANQ--AR-LFDSTHYLKAFGIGDVWVAVGWSSDVLPAVKRMSNVA 226 (380)
Q Consensus 160 ~-~~--~~~~-----~~~~~-~~~~~~~~~L~~l-~~~--v~-~~~~~~~~~~~~~Gev~~~~~~s~~~~~~~~~~~~i~ 226 (380)
. +. +.+. ...+. ....++.+.+.++ ..+ +. ..+.++..+.|.+|+++|.++++.....+.+.+.+++
T Consensus 169 ~~~~~~~~dg~~~~~~~~~~~~~~~~al~~~~~l~~~~g~~~~~~~~~~~~~~f~~G~~am~~~g~w~~~~~~~~~~~~~ 248 (386)
T 2gh9_A 169 ENVFAKDAKGNLDPTKLLIGGEVGEKALQFIKDLRFKYNLVPEGVDYGVADGAFKDGALAMILNGPWALGDYKKAKVDFG 248 (386)
T ss_dssp SSSEEEETTTEEEEEEESSSHHHHHHHHHHHHHHHHTSCCSCTTCCHHHHHHHHHHTCEEEEEECGGGHHHHHHTTCCEE
T ss_pred ceEeeecccCCccccccccCCHHHHHHHHHHHHHHHhcCcCCCCCChHHHHHHHhCCCeeEEEeCcHHHHHHHhcCCCeE
Confidence 5 33 2221 11111 1134566777777 443 11 1123456789999999999998877766665667888
Q ss_pred EE-ccC-CC------ccceeeeEEEeCCCCCcccccCCCCCCChHHHHHHHHHHhhHHhhchhhhh
Q 016927 227 VV-VPK-SG------ASLWADLWAIPAASRLETKQIGGRVRGPSPLIHQWIEFCLQTARALPFKQE 284 (380)
Q Consensus 227 ~~-~P~-eG------~~~~~d~~~I~k~s~~~~~~~~~~~~~~~~~A~~fi~fllspe~~~~~~~~ 284 (380)
++ +|. +| ...+..+++|+++++|++ +|++||+|+++++.|..+++.
T Consensus 249 ~~~~P~~~g~~~~~~~~~~~~~~~i~~~s~~~e------------~A~~fl~~l~s~e~~~~~~~~ 302 (386)
T 2gh9_A 249 IAPFPVPPGAKNPWGPFLGVQGVVVNAYSKNKT------------QAVNFAKTLVTGRNLVAFNQA 302 (386)
T ss_dssp EECCCCCTTCSSCCCCEEEEEEEEEBTTCTTHH------------HHHHHHHHHTSHHHHHHHHHH
T ss_pred EEecCCCCCCCCcccccccceEEEEECCCCCHH------------HHHHHHHHHhCHHHHHHHHHh
Confidence 87 785 33 234567899999999998 999999999999999988764
No 38
>2xz3_A Maltose ABC transporter periplasmic protein, ENVE glycoprotein; viral protein, viral membrane fusion, hairpin, chimera; HET: MAL; 1.95A {Escherichia coli} PDB: 1mg1_A*
Probab=99.86 E-value=9.7e-21 Score=191.06 Aligned_cols=243 Identities=15% Similarity=0.166 Sum_probs=162.7
Q ss_pred CceEEEEEEcccHHHHHHhcccchhHhhcCCCCCCCccEEEeCcHHHHHHHHcCcccccccCCCccccCCCChhhHHHHh
Q 016927 6 KRLKFQMNLCASIDGIVNNLSVPFNKVKAKSAPYMAADLVSVGDSWLSFAIKKRLIEPIAGAEDQDWFKCLSHKWKVYLR 85 (380)
Q Consensus 6 ~~v~v~~~~~gs~~~~~~~~~~~~~kl~ag~~~~~~~Dvv~~~~~~~~~~~~~gll~pld~~~~~~~~~~~~~~~~~~~~ 85 (380)
.+|+|+.+..++++ +++. +.+.+| . .|||+.++..++..+++.|+|.||+... .. .+++.+.+++
T Consensus 32 pgI~V~~~~~~~~~---~kl~---~~~asg-~---~PDV~~~~~~~~~~~~~~G~l~~L~~~~--~~---~~~~~~~~~~ 96 (463)
T 2xz3_A 32 TGIKVTVEHPDKLE---EKFP---QVAATG-D---GPDIIFWAHDRFGGYAQSGLLAEITPDK--AF---QDKLYPFTWD 96 (463)
T ss_dssp HCCEEEEECCTTHH---HHHH---HHHHTT-C---SCSEEEEEGGGHHHHHHTTCBCCCCCCH--HH---HHTBCHHHHH
T ss_pred cCCeEEEEecCchH---HHHH---HHHhCC-C---CCcEEEECchhHHHHHHCCceecCCcch--hh---hhhCCHHHHH
Confidence 34666666665532 2211 123333 2 5999999888999999999999998631 11 2223333333
Q ss_pred hhCCCccCCCCCEEEeecccceeEEEEeccccccCCCCCCCCHHHhcC--cccc--CceeeecCh--hHHHHHHHHHcCC
Q 016927 86 RNDAGEIDPRGKIWAAPYRWGTMVIAYKKSKFRKHNLAPIEDWKDLWR--PELA--GRISMVNSP--REVIGSVLKYMGA 159 (380)
Q Consensus 86 ~~~~~~~d~~g~~Y~vP~~~~~~gi~Yn~d~~~~~g~~~p~sW~dL~~--~~~~--gki~~~~~~--~~~~~~al~~~G~ 159 (380)
. ..+ +|+.||+|+..++.+|+||+|+|++ +|+||+||++ .+++ |++++.... ...+...+...|+
T Consensus 97 ~---~~~--dGk~YgvP~~~~~~~l~YNkdlf~~----~P~Twdel~~~a~kl~~~G~~g~~~~~~~~~~~~~~~~~~Gg 167 (463)
T 2xz3_A 97 A---VRY--NGKLIAYPIAVEALSLIYNKDLLPN----PPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPLIAADGG 167 (463)
T ss_dssp H---TEE--TTEECSEEEEEECCEEEEETTTCSS----CCSBSTTHHHHHHHHHHTTCEEECCCCSSHHHHHHHHHHTTC
T ss_pred h---eEE--CCEEEEEeeeccceEEEEEhHhhhC----CCCCHHHHHHHHHHHHhCCcceeEecCCccHHHHHHHHHcCC
Confidence 2 234 4999999999999999999999997 8999999998 3554 766554322 1222333455665
Q ss_pred CCCC-----CCh-hhhhc-cchHHHHHHHHHHhhh--cc-cccchhHHHHhHcCCEEEEEechhcHHHHHHcCCCcEEE-
Q 016927 160 SYNS-----NNI-DLQVA-GGKISVQQNLALLANQ--AR-LFDSTHYLKAFGIGDVWVAVGWSSDVLPAVKRMSNVAVV- 228 (380)
Q Consensus 160 ~~~~-----~~~-~~~~~-~~~~~~~~~L~~l~~~--v~-~~~~~~~~~~~~~Gev~~~~~~s~~~~~~~~~~~~i~~~- 228 (380)
.+.+ .+. ...+. ....++.+++.++... +. ....++..+.|.+|+++|.+.++.....+.+.+.+++++
T Consensus 168 ~~~~~~~g~~d~~~~~~~~~~~~~al~~~~~l~~~g~~~~~~~~~~~~~~f~~Gk~am~~~g~w~~~~~~~~~~~~~~~~ 247 (463)
T 2xz3_A 168 YAFKYENGKYDIKDVGVDNAGAKAGLTFLVDLIKNKHMNADTDYSIAEAAFNKGETAMTINGPWAWSNIDTSKVNYGVTV 247 (463)
T ss_dssp EEEEEETTEEEEEEEESSSHHHHHHHHHHHHHHHTTSSCTTCCHHHHHHHHHTTCEEEEEECGGGHHHHHHHTCCEEEEC
T ss_pred cEeccccccccccccccCCHHHHHHHHHHHHHHHcCCCCCCCCcchHHHHHHcCCeeEEecCccchhHHhhcCCCEEEEe
Confidence 4321 010 00111 1144667777776532 21 122346678999999999998887766666667788887
Q ss_pred ccC-CC----ccceeeeEEEeCCCCCcccccCCCCCCChHHHHHHH-HHHhhHHhhchhhhh
Q 016927 229 VPK-SG----ASLWADLWAIPAASRLETKQIGGRVRGPSPLIHQWI-EFCLQTARALPFKQE 284 (380)
Q Consensus 229 ~P~-eG----~~~~~d~~~I~k~s~~~~~~~~~~~~~~~~~A~~fi-~fllspe~~~~~~~~ 284 (380)
+|. +| ...+.++++|+++++|++ +|++|| +|+++||.|..++..
T Consensus 248 ~P~~~g~~~~~~~~~~~~~I~~~sk~~e------------aA~~Fi~~~l~s~e~q~~~~~~ 297 (463)
T 2xz3_A 248 LPTFKGQPSKPFVGVLSAGINAASPNKE------------LAKEFLENYLLTDEGLEAVNKD 297 (463)
T ss_dssp CCEETTEECCCEEEEEEEEEBTTCTTHH------------HHHHHHHHTTSSHHHHHHHHHH
T ss_pred CCCCCCCCCcccccceEEEEECCCCCHH------------HHHHHHHHHhcCHHHHHHHHHh
Confidence 675 33 345667899999999998 999999 999999999998865
No 39
>1mh3_A Maltose binding-A1 homeodomain protein chimera; MATA1, binding cooperativity, maltose binding protein, MBP, sugar binding, DNA binding protein; 2.10A {Escherichia coli} SCOP: a.4.1.1 c.94.1.1 PDB: 1mh4_A 1le8_A
Probab=99.86 E-value=3.7e-21 Score=190.74 Aligned_cols=218 Identities=16% Similarity=0.163 Sum_probs=152.6
Q ss_pred CccEEEeCcHHHHHHHHcCcccccccCCCccccCCCChhhHHHHhhhCCCccCCCCCEEEeecccceeEEEEeccccccC
Q 016927 41 AADLVSVGDSWLSFAIKKRLIEPIAGAEDQDWFKCLSHKWKVYLRRNDAGEIDPRGKIWAAPYRWGTMVIAYKKSKFRKH 120 (380)
Q Consensus 41 ~~Dvv~~~~~~~~~~~~~gll~pld~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~Y~vP~~~~~~gi~Yn~d~~~~~ 120 (380)
.|||+.++..++..+++.|+|+||+... . ..+++.+.+++. ..+ +|+.||+|+..++.+|+||+|+|++
T Consensus 56 ~pDv~~~~~~~~~~~~~~g~l~~L~~~~--~---~~~~~~~~~~~~---~~~--dG~~y~vP~~~~~~~l~Ynkdl~~~- 124 (421)
T 1mh3_A 56 GPDIIFWAHDRFGGYAQSGLLAEITPDK--A---FQDKLYPFTWDA---VRY--NGKLIAYPIAVEALSLIYNKDLLPN- 124 (421)
T ss_dssp SCSEEEEEGGGHHHHHHTTCBCCCCCCH--H---HHTTBCHHHHHH---TEE--TTEECSEEEEEECCEEEEETTTCSS-
T ss_pred CCCEEEeChHhHHHHHhCCCeecCCcch--h---hHhhccHHhHhh---EEE--CCeEEEeeeeccceEEEEehhhccC-
Confidence 5999999888999999999999998641 1 123333444432 234 4999999999999999999999997
Q ss_pred CCCCCCCHHHhcC--cccc--CceeeecCh--hHHHHHHHHHcCCCCCC-----CCh-hhhhc-cchHHHHHHHHHHhhh
Q 016927 121 NLAPIEDWKDLWR--PELA--GRISMVNSP--REVIGSVLKYMGASYNS-----NNI-DLQVA-GGKISVQQNLALLANQ 187 (380)
Q Consensus 121 g~~~p~sW~dL~~--~~~~--gki~~~~~~--~~~~~~al~~~G~~~~~-----~~~-~~~~~-~~~~~~~~~L~~l~~~ 187 (380)
+|+||+||++ .+++ |++++.... ...+...+...|+.+.+ .+. ...+. ....++.+.+.++...
T Consensus 125 ---~P~Twdel~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~g~~~~~~~~~~~~~~~~al~~~~~l~~~ 201 (421)
T 1mh3_A 125 ---PPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPLIAADGGYAFKYENGKYDIKDVGVDNAGAKAGLTFLVDLIKN 201 (421)
T ss_dssp ---CCSBGGGHHHHHHHHHTTTCEEECCCCSSHHHHHHHHHHTTCEEEEECSSSEEEEEEETTSHHHHHHHHHHHHHHHT
T ss_pred ---CCCCHHHHHHHHHHHhcCCCCceeecCCchHHHHHHHHhcCCeeeccccCCCCccCccCCCHHHHHHHHHHHHHHhc
Confidence 8999999998 3554 666554322 22223344556654321 010 00111 1144666777766532
Q ss_pred --cc-cccchhHHHHhHcCCEEEEEechhcHHHHHHcCCCcEEE-ccC-CC----ccceeeeEEEeCCCCCcccccCCCC
Q 016927 188 --AR-LFDSTHYLKAFGIGDVWVAVGWSSDVLPAVKRMSNVAVV-VPK-SG----ASLWADLWAIPAASRLETKQIGGRV 258 (380)
Q Consensus 188 --v~-~~~~~~~~~~~~~Gev~~~~~~s~~~~~~~~~~~~i~~~-~P~-eG----~~~~~d~~~I~k~s~~~~~~~~~~~ 258 (380)
+. ....++..+.|.+|+++|.+.++.....+.+.+.+++++ +|. +| ...+.++++|+++++|++
T Consensus 202 g~~~~~~~~~~~~~~f~~G~~am~~~g~~~~~~~~~~~~~~~~~~~P~~~g~~~~~~~~~~~~~i~~~s~~~e------- 274 (421)
T 1mh3_A 202 KHMNADTDYSIAEAAFNKGETAMTINGPWAWSNIDTSKVNYGVTVLPTFKGQPSKPFVGVLSAGINAASPNKE------- 274 (421)
T ss_dssp TSSCTTCCHHHHHHHHHTTSEEEEEECGGGHHHHHHHTCCEEEECCCBBTTBCCCCEEEEEEEEEBTTCSCHH-------
T ss_pred CCCCCCCCchhHHHHHHCCCeeEEEeCchhHHHHhhcCCCeeEEeCCCCCCCCCCccccceEEEEECCCCCHH-------
Confidence 21 122346678999999999999887776666667788887 675 23 345677899999999998
Q ss_pred CCChHHHHHHH-HHHhhHHhhchhhhh
Q 016927 259 RGPSPLIHQWI-EFCLQTARALPFKQE 284 (380)
Q Consensus 259 ~~~~~~A~~fi-~fllspe~~~~~~~~ 284 (380)
+|++|| +|+++++.|..+++.
T Consensus 275 -----~A~~fi~~~l~s~e~~~~~~~~ 296 (421)
T 1mh3_A 275 -----LAKEFLENYLLTDEGLEAVNKD 296 (421)
T ss_dssp -----HHHHHHHHTTSSHHHHHHHHHH
T ss_pred -----HHHHHHHHHhcCHHHHHHHHHh
Confidence 999999 999999999998865
No 40
>2vgq_A Maltose-binding periplasmic protein, mitochondrial antiviral-signaling protein; immune system/transport, IPS1/MAVS/VISA/cardif; HET: MTT; 2.1A {Escherichia coli}
Probab=99.86 E-value=2e-20 Score=189.29 Aligned_cols=221 Identities=16% Similarity=0.163 Sum_probs=153.3
Q ss_pred CccEEEeCcHHHHHHHHcCcccccccCCCccccCCCChhhHHHHhhhCCCccCCCCCEEEeecccceeEEEEeccccccC
Q 016927 41 AADLVSVGDSWLSFAIKKRLIEPIAGAEDQDWFKCLSHKWKVYLRRNDAGEIDPRGKIWAAPYRWGTMVIAYKKSKFRKH 120 (380)
Q Consensus 41 ~~Dvv~~~~~~~~~~~~~gll~pld~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~Y~vP~~~~~~gi~Yn~d~~~~~ 120 (380)
.|||+.++..++..+++.|+|.||+... . ..+++.+.+++. ..+ +|+.||+|+..++.+|+||+++|++
T Consensus 71 ~PDv~~~~~~~~~~~~~~G~l~~L~~~~--~---~~~~~~~~~~~~---~~~--dGk~ygvP~~~~~~~l~YNkdl~~~- 139 (477)
T 2vgq_A 71 GPDIIFWAHDRFGGYAQSGLLAEITPDK--A---FQDKLYPFTWDA---VRY--NGKLIAYPIAVEALSLIYNKDLLPN- 139 (477)
T ss_dssp SCSEEEEEGGGHHHHHHTTCBCCCCCCH--H---HHTTBCHHHHHH---TEE--TTEECSEEEEEECCEEEEETTTCSS-
T ss_pred CCeEEEECcHHHHHHHHCCCeecCCcch--h---hHhhCCHHHHHh---eEE--CCEEEEEecccCceEEEEehHhhcc-
Confidence 5999999888999999999999998641 1 123333444432 234 4999999999999999999999997
Q ss_pred CCCCCCCHHHhcC--cccc--CceeeecCh--hHHHHHHHHHcCCCCCC-----CCh-hhhhc-cchHHHHHHHHHHhhh
Q 016927 121 NLAPIEDWKDLWR--PELA--GRISMVNSP--REVIGSVLKYMGASYNS-----NNI-DLQVA-GGKISVQQNLALLANQ 187 (380)
Q Consensus 121 g~~~p~sW~dL~~--~~~~--gki~~~~~~--~~~~~~al~~~G~~~~~-----~~~-~~~~~-~~~~~~~~~L~~l~~~ 187 (380)
+|+||++|++ .+++ |++.+.... ...+...+...|+.+.+ .+. ...+. ....++.+++.++...
T Consensus 140 ---~P~Twdel~~~a~~l~~~g~~g~~~~~~~~~~~~~~~~~~Gg~~~~~~~g~~~~~~~~~~~~~~~~al~~~~~l~~~ 216 (477)
T 2vgq_A 140 ---PPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPLIAADGGYAFKYENGKYDIKDVGVDNAGAKAGLTFLVDLIKN 216 (477)
T ss_dssp ---CCSBGGGHHHHHHHHHHTTCEEECCCCSSHHHHHHHHHHTTCEEEEEETTEEEEEEEETTSHHHHHHHHHHHHHHHT
T ss_pred ---CCCCHHHHHHHHHHHHhCCcceeEecCCCchHHHHHHHhcCCeecccccccccccccccCCHHHHHHHHHHHHHHHC
Confidence 8999999998 3554 776554322 12223334556664321 010 00111 1144666777666532
Q ss_pred --cc-cccchhHHHHhHcCCEEEEEechhcHHHHHHcCCCcEEE-ccC-CC----ccceeeeEEEeCCCCCcccccCCCC
Q 016927 188 --AR-LFDSTHYLKAFGIGDVWVAVGWSSDVLPAVKRMSNVAVV-VPK-SG----ASLWADLWAIPAASRLETKQIGGRV 258 (380)
Q Consensus 188 --v~-~~~~~~~~~~~~~Gev~~~~~~s~~~~~~~~~~~~i~~~-~P~-eG----~~~~~d~~~I~k~s~~~~~~~~~~~ 258 (380)
+. ....++..+.|.+|+++|.+.++..+..+.+.+.+++++ +|. +| ...+..+++|+++++|++
T Consensus 217 g~~~~~~~~~~~~~~f~~G~~am~~~g~w~~~~~~~~~~~~~~~~~P~~~g~~~~~~~~~~~~~I~~~s~~~e------- 289 (477)
T 2vgq_A 217 KHMNADTDYSIAEAAFNKGETAMTINGPWAWSNIDTSKVNYGVTVLPTFKGQPSKPFVGVLSAGINAASPNKE------- 289 (477)
T ss_dssp TSSCTTCCHHHHHHHHHTTSEEEEEECGGGHHHHHHHTCCEEEECCCBBTTBCCCCEEEEEEEEEBTTCSCHH-------
T ss_pred CCCCCCCCchHHHHHHHcCCeeEEecCCchHHHHhhcCCCeEEEeCCCCCCCCCcceecceEEEEECCCCCHH-------
Confidence 11 122346678999999999998887766666567788887 675 33 235567899999999998
Q ss_pred CCChHHHHHHH-HHHhhHHhhchhhhhhcCC
Q 016927 259 RGPSPLIHQWI-EFCLQTARALPFKQEVIPG 288 (380)
Q Consensus 259 ~~~~~~A~~fi-~fllspe~~~~~~~~~~~~ 288 (380)
+|++|| +|+++|+.|..++.. .++
T Consensus 290 -----aA~~fl~~~l~s~e~q~~~~~~-~g~ 314 (477)
T 2vgq_A 290 -----LAKEFLENYLLTDEGLEAVNKD-KPL 314 (477)
T ss_dssp -----HHHHHHHHTTSSHHHHHHHHHH-SCC
T ss_pred -----HHHHHHHHHhcCHHHHHHHHHh-cCC
Confidence 999999 999999999998865 343
No 41
>2heu_A Sugar ABC transporter, sugar-binding protein; periplasmic binding protein, transport protein; 1.04A {Streptococcus pneumoniae} PDB: 2hq0_A 2i58_A* 2hfb_A
Probab=99.86 E-value=4.5e-21 Score=189.10 Aligned_cols=221 Identities=15% Similarity=0.224 Sum_probs=144.2
Q ss_pred CccEEEe-Cc-HHHHHHHHcCcccccccCCCccccCCCChhhHHHHhhhCCCccCCCCCEEEeecccceeEEEEeccccc
Q 016927 41 AADLVSV-GD-SWLSFAIKKRLIEPIAGAEDQDWFKCLSHKWKVYLRRNDAGEIDPRGKIWAAPYRWGTMVIAYKKSKFR 118 (380)
Q Consensus 41 ~~Dvv~~-~~-~~~~~~~~~gll~pld~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~Y~vP~~~~~~gi~Yn~d~~~ 118 (380)
.|||+.+ +. .++..+++.|+|.||+... . .+++.+.+++. ..+ +|+.||+|+..++.+|+||+|+|+
T Consensus 71 ~pDv~~~~~~~~~~~~~~~~g~l~~L~~~~---~---~~~~~~~~~~~---~~~--dG~~y~vP~~~~~~~l~Ynkdl~~ 139 (401)
T 2heu_A 71 VPDVVNIYPQSIELQEWAKAGVFEDLSNKD---Y---LKRVKNGYAEK---YAV--NEKVYNVPFTANAYGIYYNKDKFE 139 (401)
T ss_dssp CCSEEECCTTSHHHHHHHHTTCBCCCTTCG---G---GGGBCTTTGGG---GCB--TTBCCCEECBBCCEEEEEEHHHHH
T ss_pred CCCEEEecCCcchHHHHHhCCCeecCCchH---H---HhhccHhhhhh---eee--CCEEEEEecccCceEEEEeHHHHH
Confidence 5999999 74 6889999999999998631 1 22332322221 124 599999999999999999999999
Q ss_pred cCCCCCCCCHHHhcCc--ccc--CceeeecC---hh---HHHHHHHHHcCCCC-------CC-CChhhhhc-cchHHHHH
Q 016927 119 KHNLAPIEDWKDLWRP--ELA--GRISMVNS---PR---EVIGSVLKYMGASY-------NS-NNIDLQVA-GGKISVQQ 179 (380)
Q Consensus 119 ~~g~~~p~sW~dL~~~--~~~--gki~~~~~---~~---~~~~~al~~~G~~~-------~~-~~~~~~~~-~~~~~~~~ 179 (380)
++|+++|+||+||++. +++ |...+... .. ..+...+...|+.. +. .+....+. ....++.+
T Consensus 140 ~aGl~~P~Twdel~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~al~ 219 (401)
T 2heu_A 140 ELGLKVPETWDEFEQLVKDIVAKGQTPFGIAGADAWTLNGYNQLAFATATGGGKEANQYLRYSQPNAIKLSDPIMKDDIK 219 (401)
T ss_dssp HHTCCCCCSHHHHHHHHHHHHHTTSCCBCCCTTCGGGGHHHHHHHHHHHHTSHHHHHHHHTSSCTTCCCTTSHHHHHHHH
T ss_pred HcCCCCCCCHHHHHHHHHHHHHcCCcCeEecCccccchhhHHHHHHHHhcCCcCChHHHHHHHhcCCcccCCHHHHHHHH
Confidence 9999999999999983 443 43333211 11 11111112222211 00 00100000 11446667
Q ss_pred HHHHHhhh--cc----cccchhHHHHhHcCCEEEEEechhcHHHHHHcCC--CcEEE-ccC--CCcc--ce-ee-eEEEe
Q 016927 180 NLALLANQ--AR----LFDSTHYLKAFGIGDVWVAVGWSSDVLPAVKRMS--NVAVV-VPK--SGAS--LW-AD-LWAIP 244 (380)
Q Consensus 180 ~L~~l~~~--v~----~~~~~~~~~~~~~Gev~~~~~~s~~~~~~~~~~~--~i~~~-~P~--eG~~--~~-~d-~~~I~ 244 (380)
++.++... +. ..+.++..+.|.+|+++|.+.++.....+.+.++ +++++ +|. +|.. .+ .+ +++|+
T Consensus 220 ~~~~l~~~g~~~~~~~~~~~~~~~~~f~~G~~am~~~g~~~~~~~~~~~~~~~~~~~~~P~~~~g~~~~~~g~~~~~~i~ 299 (401)
T 2heu_A 220 VMDILRINGSKQKNWEGAGYTDVIGAFARGDVLMTPNGSWAITAINEQKPNFKIGTFMIPGKEKGQSLTVGAGDLAWSIS 299 (401)
T ss_dssp HHHGGGSTTCBCTTGGGCCHHHHHHHHHTTSSSEEEEETTHHHHHHTTCCSSCEEEECBCCSSTTCCBEEECBSSEEEEB
T ss_pred HHHHHHHCCCCCCCcCCCChHHHHHHHHcCCceEEecCcccHHHHHhhCcccceeEEECCCCCCCCcccccCCcceEEEE
Confidence 77666531 11 1223467789999999999988777666655443 57766 674 3432 22 34 59999
Q ss_pred CCCCCcccccCCCCCCChHHHHHHHHHHhhHHhhchhhhh
Q 016927 245 AASRLETKQIGGRVRGPSPLIHQWIEFCLQTARALPFKQE 284 (380)
Q Consensus 245 k~s~~~~~~~~~~~~~~~~~A~~fi~fllspe~~~~~~~~ 284 (380)
++++|++ +|++||+|+++++.|..+++.
T Consensus 300 ~~s~~~e------------~A~~fi~~l~s~e~~~~~~~~ 327 (401)
T 2heu_A 300 ATTKHPK------------EANAFVEYMTRPEVMQKYYDV 327 (401)
T ss_dssp TTCSCHH------------HHHHHHHHHTSHHHHHHHHHH
T ss_pred CCCCCHH------------HHHHHHHHHcChHHHHHHHHh
Confidence 9999998 999999999999999998765
No 42
>3oai_A Maltose-binding periplasmic protein, myelin prote; schwann cell membrane protein, immunoglobulin-folding, inter adhesion, tetramer; HET: MAL; 2.10A {Escherichia coli}
Probab=99.86 E-value=4.5e-21 Score=194.21 Aligned_cols=218 Identities=16% Similarity=0.146 Sum_probs=152.4
Q ss_pred CccEEEeCcHHHHHHHHcCcccccccCCCccccCCCChhhHHHHhhhCCCccCCCCCEEEeecccceeEEEEeccccccC
Q 016927 41 AADLVSVGDSWLSFAIKKRLIEPIAGAEDQDWFKCLSHKWKVYLRRNDAGEIDPRGKIWAAPYRWGTMVIAYKKSKFRKH 120 (380)
Q Consensus 41 ~~Dvv~~~~~~~~~~~~~gll~pld~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~Y~vP~~~~~~gi~Yn~d~~~~~ 120 (380)
.|||+.++..++..+++.|+|+||+... +. .+++.+..++. ..+ +|+.||+|+..++.+|+||+|+|++
T Consensus 56 ~pDv~~~~~~~~~~~~~~g~l~~L~~~~--~~---~~~~~~~~~~~---~~~--~G~~y~~P~~~~~~~l~ynkdl~~~- 124 (507)
T 3oai_A 56 GPDIIFWAHDRFGGYAQSGLLAEITPDK--AF---QDKLYPFTWDA---VRY--NGKLIAYPIAVEALSLIYNKDLLPN- 124 (507)
T ss_dssp SCSEEEEEGGGHHHHHHTTCBCCCCCCH--HH---HTTBCHHHHHH---TEE--TTEECSEEEEEECCEEEEETTTCSS-
T ss_pred CCCEEEEcchhHHHHHHCCCcccCCchh--hh---HhhccHHHHhh---eEE--CCEEEEeeccccceEEEEehHhhcc-
Confidence 5999999989999999999999999641 11 23333444432 234 4999999999999999999999996
Q ss_pred CCCCCCCHHHhcCc--cc--cCceeeecC--hhHHHHHHHHHcCCCCCCCCh------hhhhc-cchHHHHHHHHHHhhh
Q 016927 121 NLAPIEDWKDLWRP--EL--AGRISMVNS--PREVIGSVLKYMGASYNSNNI------DLQVA-GGKISVQQNLALLANQ 187 (380)
Q Consensus 121 g~~~p~sW~dL~~~--~~--~gki~~~~~--~~~~~~~al~~~G~~~~~~~~------~~~~~-~~~~~~~~~L~~l~~~ 187 (380)
+|+||+||++. ++ +|+..+.-. ....+...+...|+.....+. ...+. ....++.+.+.++...
T Consensus 125 ---~P~Twdel~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~l~~~ 201 (507)
T 3oai_A 125 ---PPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPLIAADGGYAFKYENGKYDIKDVGVDNAGAKAGLTFLVDLIKN 201 (507)
T ss_dssp ---CCSBSTTHHHHHHHHHTTTCEEECCCCSSHHHHHHHHHHTTCEEEEEETTEEEEEEEESSSHHHHHHHHHHHHHHHT
T ss_pred ---CcCCHHHHHHHHHHHHhCCCceEEeecCchHHHHHHHHhcCCeeecccCCCcCccccccCCHHHHHHHHHHHHHHHc
Confidence 89999999985 22 355443221 122223334556654321110 00011 1144666777776542
Q ss_pred --cc-cccchhHHHHhHcCCEEEEEechhcHHHHHHcCCCcEEE-ccCC-----CccceeeeEEEeCCCCCcccccCCCC
Q 016927 188 --AR-LFDSTHYLKAFGIGDVWVAVGWSSDVLPAVKRMSNVAVV-VPKS-----GASLWADLWAIPAASRLETKQIGGRV 258 (380)
Q Consensus 188 --v~-~~~~~~~~~~~~~Gev~~~~~~s~~~~~~~~~~~~i~~~-~P~e-----G~~~~~d~~~I~k~s~~~~~~~~~~~ 258 (380)
+. ....++..+.|.+|+++|.+.++..+..+.+.+.+++++ +|.. +...+..+++|+++++|++
T Consensus 202 g~~~~~~~~~~~~~~f~~G~~a~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~i~~~s~~~e------- 274 (507)
T 3oai_A 202 KHMNADTDYSIAEAAFNKGETAMTINGPWAWSNIDTSKVNYGVTVLPTFKGQPSKPFVGVLSAGINAASPNKE------- 274 (507)
T ss_dssp TSSCTTCCHHHHHHHHHTTCEEEEEECGGGHHHHHHHCCCEEEECCCBBTTBCCCCEEEEEEEEEBTTCTTHH-------
T ss_pred CCCCCCcchhHHHHHHhcCCeEEEeccccccChhhhcCCceeEEeCCCCCCCCCCccccceEEEEECCCCCHH-------
Confidence 11 123356778999999999999998887777777788886 5742 2345678899999999998
Q ss_pred CCChHHHHHHHH-HHhhHHhhchhhhh
Q 016927 259 RGPSPLIHQWIE-FCLQTARALPFKQE 284 (380)
Q Consensus 259 ~~~~~~A~~fi~-fllspe~~~~~~~~ 284 (380)
+|++||+ |++++|.|..+.+.
T Consensus 275 -----~A~~fl~~~l~s~e~~~~~~~~ 296 (507)
T 3oai_A 275 -----LAKEFLENYLLTDEGLEAVNKD 296 (507)
T ss_dssp -----HHHHHHHHTTSSHHHHHHHHHH
T ss_pred -----HHHHHHHHHhcCHHHHHHHhhc
Confidence 9999996 99999999998865
No 43
>1urs_A Maltose-binding protein; maltodextrin-binding protein, acidophIle, thermoacidophIle, hyperthermophIle, thermophIle; HET: MLR; 1.45A {Alicyclobacillus acidocaldarius} SCOP: c.94.1.1 PDB: 1urg_A* 1urd_A*
Probab=99.86 E-value=3e-21 Score=190.28 Aligned_cols=216 Identities=12% Similarity=0.109 Sum_probs=150.9
Q ss_pred CccEEE-eCcHHHHHHHHcCcccccccCCCccccCCCChhhHHHHhhhCCCccCCCCCEEEeecccceeEEEEecccccc
Q 016927 41 AADLVS-VGDSWLSFAIKKRLIEPIAGAEDQDWFKCLSHKWKVYLRRNDAGEIDPRGKIWAAPYRWGTMVIAYKKSKFRK 119 (380)
Q Consensus 41 ~~Dvv~-~~~~~~~~~~~~gll~pld~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~Y~vP~~~~~~gi~Yn~d~~~~ 119 (380)
.|||+. +...++..+++.|+|+||+.. +. ..+++.+..++. ..+ +|+.||+|+..++.+|+||+|+|++
T Consensus 85 ~pDv~~~~~~~~~~~~~~~g~l~~L~~~---~~--~~~~~~~~~~~~---~~~--dG~~y~vP~~~~~~~l~YNkdl~~~ 154 (402)
T 1urs_A 85 GPDVVFGMPHDNNGVFAEEGLMAPVPSG---VL--NTGLYAPNTIDA---IKV--NGTMYSVPVSVQVAAIYYNKKLVPQ 154 (402)
T ss_dssp CCSEEEEEEGGGHHHHHHTTCBCCCCTT---SC--CGGGSCHHHHHT---TEE--TTEECSEEEEEEECEEEEETTTCSS
T ss_pred CCcEEEecChhhHHHHHHCCCeecCCcc---hh--hhhhcCHHhHhh---eEE--CCEEEEecccCcccEEEEehhhhcc
Confidence 599999 888899999999999999742 11 123444444432 234 5999999999999999999999997
Q ss_pred CCCCCCCCHHHhcCccccCceeeecChh--HHHHHHHHHcCCCCCCCC------hhhhhc-cchHHHHHHHHHHhhh--c
Q 016927 120 HNLAPIEDWKDLWRPELAGRISMVNSPR--EVIGSVLKYMGASYNSNN------IDLQVA-GGKISVQQNLALLANQ--A 188 (380)
Q Consensus 120 ~g~~~p~sW~dL~~~~~~gki~~~~~~~--~~~~~al~~~G~~~~~~~------~~~~~~-~~~~~~~~~L~~l~~~--v 188 (380)
+|+||+||++ + +|++.+..... ..+...+...|..+.+.+ ....+. ....++.+++.+|... +
T Consensus 155 ----~P~Twdel~~-~-~g~~g~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~l~~~~g~ 228 (402)
T 1urs_A 155 ----PPQTWAEFVK-D-ANAHGFMYDQANLYFDYAIIGGYGGYVFKDNNGTLDPNNIGLDTPGAVQAYTLMRDMVSKYHW 228 (402)
T ss_dssp ----CCCSHHHHHH-H-HHHHCEECCTTCHHHHHHHHHHTTCEEEEEETTEEEEEEEESSSHHHHHHHHHHHHHHHTSCS
T ss_pred ----CCCCHHHHHh-c-cCcceeeecCCChhhHHHHHHhcCCeeecCCccccccCccccCCHHHHHHHHHHHHHHHhcCc
Confidence 8999999999 5 55554443221 222233455665432111 010111 1244667777776532 2
Q ss_pred c--cccchhHHHHhHcCCEEEEEechhcHHHHHHcCCCcEEE-ccC--CC----ccceeeeEEEeCCCCCcccccCCCCC
Q 016927 189 R--LFDSTHYLKAFGIGDVWVAVGWSSDVLPAVKRMSNVAVV-VPK--SG----ASLWADLWAIPAASRLETKQIGGRVR 259 (380)
Q Consensus 189 ~--~~~~~~~~~~~~~Gev~~~~~~s~~~~~~~~~~~~i~~~-~P~--eG----~~~~~d~~~I~k~s~~~~~~~~~~~~ 259 (380)
. ....++..+.|.+|+++|.+.++..+..+.+.+.+++++ +|. +| ...+..+++|+++++|++
T Consensus 229 ~~~~~~~~~~~~~f~~G~~am~~~g~w~~~~~~~~~~~~~~~~~P~~~~g~~~~~~~~~~~~~i~~~s~~~e-------- 300 (402)
T 1urs_A 229 MTPSTNGSIAKAEFLAGKIGMYVSGPWDTADIEKAKIDFGVTPWPTLPNGKHATPFLGVITAFVNKESKTQA-------- 300 (402)
T ss_dssp CCTTCCHHHHHHHHHTTCCSEEEECGGGHHHHHHTTCCEEEECCCCCTTSCCCCCEEEEEEEEEBTTCSCHH--------
T ss_pred CCCCCCchhhHHHHhcCCeeEEEcCcchHHHHHhcCCceEEEeCCCCCCCCCccceecceEEEEeCCCCCHH--------
Confidence 1 122346778999999999999887776666556788887 775 24 234567899999999998
Q ss_pred CChHHHHHHHHHHhhHHhhchhhhh
Q 016927 260 GPSPLIHQWIEFCLQTARALPFKQE 284 (380)
Q Consensus 260 ~~~~~A~~fi~fllspe~~~~~~~~ 284 (380)
+|++||+|+++++.|..+++.
T Consensus 301 ----~A~~fl~~l~s~e~~~~~~~~ 321 (402)
T 1urs_A 301 ----ADWSLVQALTSAQAQQMYFRD 321 (402)
T ss_dssp ----HHHHHHHHHTSHHHHHHHHHH
T ss_pred ----HHHHHHHHHcCHHHHHHHHhh
Confidence 999999999999999998865
No 44
>3py7_A Maltose-binding periplasmic protein,paxillin LD1, chimera; viral protein; HET: MLR; 2.29A {Escherichia coli}
Probab=99.86 E-value=8.5e-21 Score=194.20 Aligned_cols=224 Identities=16% Similarity=0.146 Sum_probs=154.4
Q ss_pred CccEEEeCcHHHHHHHHcCcccccccCCCccccCCCChhhHHHHhhhCCCccCCCCCEEEeecccceeEEEEeccccccC
Q 016927 41 AADLVSVGDSWLSFAIKKRLIEPIAGAEDQDWFKCLSHKWKVYLRRNDAGEIDPRGKIWAAPYRWGTMVIAYKKSKFRKH 120 (380)
Q Consensus 41 ~~Dvv~~~~~~~~~~~~~gll~pld~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~Y~vP~~~~~~gi~Yn~d~~~~~ 120 (380)
.|||+.++..++..+++.|+|.||+... +. .+++.+..++. ..+ +|+.||+|+..++.+++||+|+|++
T Consensus 57 ~pDv~~~~~~~~~~~~~~G~l~~L~~~~--~~---~~~~~~~~~~~---~~~--dGk~YglP~~~~~~~l~YNkdl~~~- 125 (523)
T 3py7_A 57 GPDIIFWAHDRFGGYAQSGLLAEITPAA--AF---QDKLYPFTWDA---VRY--NGKLIAYPIAVEALSLIYNKDLLPN- 125 (523)
T ss_dssp SCSEEEEEGGGHHHHHHTTCBCCCCCCH--HH---HTTBCHHHHHH---TEE--TTEECSEEEEEECCEEEEETTTCSS-
T ss_pred CCcEEEECcHhHHHHHHCCCeecCCcch--hh---hhhcCHHHHhh---eEE--CCEEEEEeeeccceEEEEEhHHhhc-
Confidence 4999999989999999999999999641 12 22333434332 234 4999999999999999999999986
Q ss_pred CCCCCCCHHHhcCc--cc--cCceeeecC--hhHHHHHHHHHcCCCCCCCCh------hhhhc-cchHHHHHHHHHHhhh
Q 016927 121 NLAPIEDWKDLWRP--EL--AGRISMVNS--PREVIGSVLKYMGASYNSNNI------DLQVA-GGKISVQQNLALLANQ 187 (380)
Q Consensus 121 g~~~p~sW~dL~~~--~~--~gki~~~~~--~~~~~~~al~~~G~~~~~~~~------~~~~~-~~~~~~~~~L~~l~~~ 187 (380)
+|+||+||++. ++ +|+..+.-. ....+...+...|+.+...+. ...+. ....++.+.+.++..+
T Consensus 126 ---~P~Twdel~~~a~~l~~~g~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~l~~~ 202 (523)
T 3py7_A 126 ---PPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPLIAADGGYAFKYENGKYDIKDVGVDNAGAKAGLTFLVDLIKN 202 (523)
T ss_dssp ---CCSBGGGHHHHHHHHHTTTCEEECCCCSSHHHHHHHHHHTTCEEEEEETTEEEEEEEESSSHHHHHHHHHHHHHHHT
T ss_pred ---CCCCHHHHHHHHHHHHhCCCceeEeecCchHHHHHHHHhhCcceeccccccccccccccCCHHHHHHHHHHHHHHhc
Confidence 89999999985 23 355443221 122223334555654321100 00011 1144666777776543
Q ss_pred --cc-cccchhHHHHhHcCCEEEEEechhcHHHHHHcCCCcEEE-ccCC-----CccceeeeEEEeCCCCCcccccCCCC
Q 016927 188 --AR-LFDSTHYLKAFGIGDVWVAVGWSSDVLPAVKRMSNVAVV-VPKS-----GASLWADLWAIPAASRLETKQIGGRV 258 (380)
Q Consensus 188 --v~-~~~~~~~~~~~~~Gev~~~~~~s~~~~~~~~~~~~i~~~-~P~e-----G~~~~~d~~~I~k~s~~~~~~~~~~~ 258 (380)
+. ..+.++..+.|.+|+++|.+.++..+..+.+.+.+++++ +|.. +...+..+++|+++++|++
T Consensus 203 g~~~~~~~~~~~~~~f~~G~~am~~~g~~~~~~~~~~~~~~~~~~~P~~~g~~~~~~~g~~~~~I~~~sk~~e------- 275 (523)
T 3py7_A 203 KHMNADTDYSIAEAAFNKGETAMTINGPWAWSNIDTSAVNYGVTVLPTFKGQPSKPFVGVLSAGINAASPNKE------- 275 (523)
T ss_dssp TSSCTTCCHHHHHHHHHTTSEEEEEECGGGHHHHHHSSCCEEEECCCEETTEECCCEEEEEEEEEBTTCSCHH-------
T ss_pred CCCCCCCChHHHHHHHhcCCEEEEecCCcchhHHHhcCCceeEEECCCCCCCCCCccccceEEEEECCCCCHH-------
Confidence 11 123356778999999999999998888777777788886 5742 2345678899999999998
Q ss_pred CCChHHHHHHHH-HHhhHHhhchhhhhhcCCCCC
Q 016927 259 RGPSPLIHQWIE-FCLQTARALPFKQEVIPGASP 291 (380)
Q Consensus 259 ~~~~~~A~~fi~-fllspe~~~~~~~~~~~~~~p 291 (380)
+|++||+ |++++|.|..+... .++..|
T Consensus 276 -----aA~~fi~~~l~s~e~q~~~~~~-~~~~~p 303 (523)
T 3py7_A 276 -----LAKEFLENYLLTDEGLEAVNKD-KPLGAV 303 (523)
T ss_dssp -----HHHHHHHHTTSSHHHHHHHHHH-SCCCEE
T ss_pred -----HHHHHHHHHhcCHHHHHHHhhc-CCCCCC
Confidence 9999996 99999999998864 333334
No 45
>1y4c_A Maltose binding protein fused with designed helical protein; de novo designed helical protein, maltose binding protein fusion, de novo protein; HET: GLC; 1.90A {Escherichia coli}
Probab=99.85 E-value=6.7e-21 Score=193.82 Aligned_cols=218 Identities=16% Similarity=0.163 Sum_probs=152.3
Q ss_pred CccEEEeCcHHHHHHHHcCcccccccCCCccccCCCChhhHHHHhhhCCCccCCCCCEEEeecccceeEEEEeccccccC
Q 016927 41 AADLVSVGDSWLSFAIKKRLIEPIAGAEDQDWFKCLSHKWKVYLRRNDAGEIDPRGKIWAAPYRWGTMVIAYKKSKFRKH 120 (380)
Q Consensus 41 ~~Dvv~~~~~~~~~~~~~gll~pld~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~Y~vP~~~~~~gi~Yn~d~~~~~ 120 (380)
.|||+.++..++..+++.|+|.||+... . ..+++.+.+++. ..+ +|+.||+|+.+++.+|+||+|+|++
T Consensus 56 ~PDV~~~~~~~~~~~~~~G~L~~L~~~~--~---~~~~~~~~~~~~---~~~--dGk~YgvP~~~~~~~l~YNkdlf~~- 124 (494)
T 1y4c_A 56 GPDIIFWAHDRFGGYAQSGLLAEITPDK--A---FQDKLYPFTWDA---VRY--NGKLIAYPIAVEALSLIYNKDLLPN- 124 (494)
T ss_dssp SCSEEEEEGGGHHHHHHTTCBCCCCCCH--H---HHTTBCHHHHHH---TEE--TTEECSEEEEEECCEEEEETTTCSS-
T ss_pred CCeEEEECcHhHHHHHHCCCeeCCCcch--h---hHHhCCHHHHHh---eEE--CCEEEEEeeeCCeeEEEEEhHHhhC-
Confidence 5999999888999999999999998641 1 223334444432 234 4999999999999999999999997
Q ss_pred CCCCCCCHHHhcC--cccc--CceeeecCh--hHHHHHHHHHcCCCCCC-----CCh-hhhhc-cchHHHHHHHHHHhhh
Q 016927 121 NLAPIEDWKDLWR--PELA--GRISMVNSP--REVIGSVLKYMGASYNS-----NNI-DLQVA-GGKISVQQNLALLANQ 187 (380)
Q Consensus 121 g~~~p~sW~dL~~--~~~~--gki~~~~~~--~~~~~~al~~~G~~~~~-----~~~-~~~~~-~~~~~~~~~L~~l~~~ 187 (380)
+|+||+||++ .+++ |++.+.... ...+...+...|..+.+ .+. ...+. ....++.+++.++...
T Consensus 125 ---~P~TwdEl~~~a~klk~~G~~g~~~~~~~~~~~~~~l~~~Gg~~~~~~~g~~d~~~~~~~~~~~~~al~~l~~L~~~ 201 (494)
T 1y4c_A 125 ---PPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPLIAADGGYAFKYENGKYDIKDVGVDNAGAKAGLTFLVDLIKN 201 (494)
T ss_dssp ---CCSBGGGHHHHHHHHHTTTCEEECCCSSSHHHHHHHHHHTTCEEEEEETTEEEEEEEETTSHHHHHHHHHHHHHHHT
T ss_pred ---CCCCHHHHHHHHHHHHhCCceEEEecCCchHHHHHHHHhcCCceeccccccccccccccCCHHHHHHHHHHHHHHHC
Confidence 8999999998 3454 666554322 12222334555654321 010 00111 1144666777776532
Q ss_pred --cc-cccchhHHHHhHcCCEEEEEechhcHHHHHHcCCCcEEE-ccC-CC----ccceeeeEEEeCCCCCcccccCCCC
Q 016927 188 --AR-LFDSTHYLKAFGIGDVWVAVGWSSDVLPAVKRMSNVAVV-VPK-SG----ASLWADLWAIPAASRLETKQIGGRV 258 (380)
Q Consensus 188 --v~-~~~~~~~~~~~~~Gev~~~~~~s~~~~~~~~~~~~i~~~-~P~-eG----~~~~~d~~~I~k~s~~~~~~~~~~~ 258 (380)
+. ..+.++..+.|.+|+++|.+.++..+..+.+.+.+++++ +|. +| ...+.++++|+++++|++
T Consensus 202 g~~~~~~~~~~~~~~f~~Gk~am~~~g~w~~~~~~~~~~~~gv~p~P~~~g~~~~~~~g~~~~~I~~~skn~e------- 274 (494)
T 1y4c_A 202 KHMNADTDYSIAEAAFNKGETAMTINGPWAWSNIDTSKVNYGVTVLPTFKGQPSKPFVGVLSAGINAASPNKE------- 274 (494)
T ss_dssp TSSCTTCCHHHHHHHHHTTCEEEEEECGGGHHHHHHTTCCEEEECCCBBTTBCCCCEEEEEEEEEBTTCSCHH-------
T ss_pred CCCCCCCChhHHHHHHHCCCeEEEEeChhHHHHHHhcCCCEEEEeCCCCCCCCccccccceEEEEECCCCCHH-------
Confidence 21 122346678999999999998887776666667788887 675 33 245677899999999998
Q ss_pred CCChHHHHHHH-HHHhhHHhhchhhhh
Q 016927 259 RGPSPLIHQWI-EFCLQTARALPFKQE 284 (380)
Q Consensus 259 ~~~~~~A~~fi-~fllspe~~~~~~~~ 284 (380)
+|++|| +|+++|+.|..++..
T Consensus 275 -----aA~~Fl~~fl~s~e~q~~~~~~ 296 (494)
T 1y4c_A 275 -----LAKEFLENYLLTDEGLEAVNKD 296 (494)
T ss_dssp -----HHHHHHHHTTSSHHHHHHHHHH
T ss_pred -----HHHHHHHHHHcCHHHHHHHHHH
Confidence 999999 999999999998865
No 46
>3oo8_A ABC transporter binding protein ACBH; class 2 SBP fold, ABC transporter extracellular solute bindi protein, D-galactose binding; 1.60A {Actinoplanes} PDB: 3oo6_A* 3oo7_A 3oo9_A 3ooa_A
Probab=99.85 E-value=6e-21 Score=188.59 Aligned_cols=217 Identities=14% Similarity=0.135 Sum_probs=145.0
Q ss_pred CccEEEe-CcHHHHHHHHcCcccccccCCCccccCCCChhhHHHHhhhCCCccCCCCCEEEeecccceeEEEEecccccc
Q 016927 41 AADLVSV-GDSWLSFAIKKRLIEPIAGAEDQDWFKCLSHKWKVYLRRNDAGEIDPRGKIWAAPYRWGTMVIAYKKSKFRK 119 (380)
Q Consensus 41 ~~Dvv~~-~~~~~~~~~~~gll~pld~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~Y~vP~~~~~~gi~Yn~d~~~~ 119 (380)
.|||+.+ +..++..+++.|+|+||+... +.+. +.+.+.+++. ..+ .+|+.||+|+..++.+|+||+|+|++
T Consensus 82 ~pDv~~~~~~~~~~~~~~~g~l~~L~~~~--~~~~--~~~~~~~~~~---~~~-~~G~~y~vP~~~~~~~l~Ynkdl~~~ 153 (415)
T 3oo8_A 82 PDSLATWFAGYRLQFFAAQGLLTPIDDVW--DKIG--GTFNDAAKSL---SKG-LDGHYYLVPLYNYPWVVFYNKSVFQS 153 (415)
T ss_dssp CCSEEEEESSHHHHHHHHTTCBCCCHHHH--HHHG--GGSCHHHHHH---TBC-TTSCBCEEEEEECCEEEEEEHHHHHH
T ss_pred CCCEEEecCcchHHHHHHCCceeccHHHH--HHHH--hhcCHHHHhh---ccc-cCCcEEEEecccceEEEEEeHHHHHH
Confidence 4999976 677899999999999998631 1111 2333444432 233 25999999999999999999999999
Q ss_pred CCCCCCCCHHHhcCc--cc--cCceee--ecCh----hHHHHHH-HHHcCCCC---------CCCChhhhhccchHHHHH
Q 016927 120 HNLAPIEDWKDLWRP--EL--AGRISM--VNSP----REVIGSV-LKYMGASY---------NSNNIDLQVAGGKISVQQ 179 (380)
Q Consensus 120 ~g~~~p~sW~dL~~~--~~--~gki~~--~~~~----~~~~~~a-l~~~G~~~---------~~~~~~~~~~~~~~~~~~ 179 (380)
+|+++|+||++|++. ++ +|...+ .... ...+... +...|.++ .-.++. ..++.+
T Consensus 154 ~G~~~P~Twdel~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~------~~~al~ 227 (415)
T 3oo8_A 154 KGYEVPASWEAFIALARKMQSDGLVPLAFADKDGWPALGTFDILNLRINGYDYHIKLMKHEVPWTDPG------VTKVFD 227 (415)
T ss_dssp HTCCCCSBHHHHHHHHHHHHHTTCEEEECCCTTSSTTHHHHHHHHHHHTCHHHHHHHHHTSSCTTSHH------HHHHHH
T ss_pred cCCCCCCCHHHHHHHHHHHHHcCCCceeecCCCCCcHHHHHHHHHHhccCHHHHHHHHcCCcCCCCHH------HHHHHH
Confidence 999999999999975 22 344322 2111 1122222 22333221 111222 456677
Q ss_pred HHHHHhhhcc----cccchhHHHHhHcCCEEEEEech-hcHHHHHH-cCCCcEEE-ccCC----Cc---cceeeeEEEeC
Q 016927 180 NLALLANQAR----LFDSTHYLKAFGIGDVWVAVGWS-SDVLPAVK-RMSNVAVV-VPKS----GA---SLWADLWAIPA 245 (380)
Q Consensus 180 ~L~~l~~~v~----~~~~~~~~~~~~~Gev~~~~~~s-~~~~~~~~-~~~~i~~~-~P~e----G~---~~~~d~~~I~k 245 (380)
.+.++...+. .....+..+.|.+|+++|.+.++ .....+.+ .+.+++++ +|.. |. ..+.++++|++
T Consensus 228 ~~~~l~~~~~~~~~~~~~~~~~~~f~~G~~a~~~~g~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~I~~ 307 (415)
T 3oo8_A 228 QWRELAAYQQKGANGRTWQDAAKALENKQAGMMFQGSNQVAANYSAKNLPDLDFFVFPAINPQYGTDYMDAPTDGFILPK 307 (415)
T ss_dssp HHHHHGGGBCSSGGGCCHHHHHHHHHTTSEEEEEEEHHHHHHHSCTTTGGGEEEECCCBSSTTTTTCEEECCCEEEECBT
T ss_pred HHHHHHHHhCCCCcccCHHHHHHHHHcCCeeEEEcccHhhhhcCCccccCCceEEeCCCCCCCCCCccccccCceEEEEC
Confidence 7777765322 12235677899999999999877 43333322 23467764 4531 21 34668999999
Q ss_pred CCCCcccccCCCCCCChHHHHHHHHHHhhHHhhchhhh
Q 016927 246 ASRLETKQIGGRVRGPSPLIHQWIEFCLQTARALPFKQ 283 (380)
Q Consensus 246 ~s~~~~~~~~~~~~~~~~~A~~fi~fllspe~~~~~~~ 283 (380)
+++|++ +|++||+|++++|.|..+++
T Consensus 308 ~s~~~e------------~A~~fl~~l~s~e~q~~~~~ 333 (415)
T 3oo8_A 308 KGKNAA------------AAKKVLQYIGTAEAEAAFLK 333 (415)
T ss_dssp TCSCHH------------HHHHHHHHHTSHHHHHHHHT
T ss_pred CCCCHH------------HHHHHHHHHhCHHHHHHHHh
Confidence 999998 99999999999999999986
No 47
>2xd3_A MALX, maltose/maltodextrin-binding protein; solute-binding protein, sugar binding protein, virulence, alpha-glucan, sugar transport; HET: GLC; 2.00A {Streptococcus pneumoniae} PDB: 2xd2_A*
Probab=99.85 E-value=1.4e-20 Score=186.52 Aligned_cols=243 Identities=14% Similarity=0.091 Sum_probs=161.0
Q ss_pred ceEEEEEEcccHHHHHHhcccchhHhhcCCCCCCCccEEEeCcHHHHHHHHcCcccccccCCCccccCCCChhhHHHHhh
Q 016927 7 RLKFQMNLCASIDGIVNNLSVPFNKVKAKSAPYMAADLVSVGDSWLSFAIKKRLIEPIAGAEDQDWFKCLSHKWKVYLRR 86 (380)
Q Consensus 7 ~v~v~~~~~gs~~~~~~~~~~~~~kl~ag~~~~~~~Dvv~~~~~~~~~~~~~gll~pld~~~~~~~~~~~~~~~~~~~~~ 86 (380)
+|+|+++..+ .++..+++. +.+.+|. .|||+.++..++..+++.|+|.||+.. ...+ +.+..++.
T Consensus 61 ~i~V~~~~~~-~~~~~~kl~---~~~~sg~----~pDv~~~~~~~~~~~~~~g~l~~L~~~----~~~~---~~~~~~~~ 125 (416)
T 2xd3_A 61 GVKVTLKTGD-ALGGLDKLS---LDNQNGN----VPDVMMAPYDRVGSLGSDGQLSEVKLS----DGAK---TDDTTKSL 125 (416)
T ss_dssp SCCCEEEECC-HHHHHHTHH---HHHHHSC----CCSEEEEEHHHHHHHHHTTCBCCCCCC----GGGC---CCHHHHHH
T ss_pred CCEEEEEeCC-hHHHHHHHH---HHHhCCC----CCCEEEeCchhHHHHHHCCCeecCCHH----HHhh---CCHHHHHh
Confidence 4555555553 345555532 2233443 499999988899999999999999842 1223 33333332
Q ss_pred hCCCccCCCCCEEEeecccceeEEEEeccccccCCCCCCCCHHHhcCc--ccc--------CceeeecChh--HHHHHHH
Q 016927 87 NDAGEIDPRGKIWAAPYRWGTMVIAYKKSKFRKHNLAPIEDWKDLWRP--ELA--------GRISMVNSPR--EVIGSVL 154 (380)
Q Consensus 87 ~~~~~~d~~g~~Y~vP~~~~~~gi~Yn~d~~~~~g~~~p~sW~dL~~~--~~~--------gki~~~~~~~--~~~~~al 154 (380)
.. +.+|+.||+|+..++.+|+||+|+|++ +|+||+||++. +++ |++.+..... ..+...+
T Consensus 126 ---~~-~~dG~~ygvP~~~~~~~l~YNkdl~~~----~P~Twdel~~~~~~l~~~~~~~~~g~~g~~~~~~~~~~~~~~~ 197 (416)
T 2xd3_A 126 ---VT-AANGKVYGAPAVIESLVMYYNKDLVKD----APKTFADLENLAKDSKYAFAGEDGKTTAFLADWTNFYYTYGLL 197 (416)
T ss_dssp ---HB-CTTCCBCCEEEEEECCEEEEETTTCSS----CCCBHHHHHHHHHSGGGBCTTSTTCBCSEECCTTSHHHHHHHH
T ss_pred ---he-eeCCeEEEEeeecCceEEEEEhhhhcC----CCCCHHHHHHHHHHhhcccccCCCCceeeEEecCcchhHHHHH
Confidence 12 135999999999999999999999997 89999999973 454 4554432221 1222334
Q ss_pred HHcCCCCCCCCh----hhhhc-cchHHHHHHHHHHhh----hccc--ccchhHHHHhHcCCEEEEEechhcHHHHHHcCC
Q 016927 155 KYMGASYNSNNI----DLQVA-GGKISVQQNLALLAN----QARL--FDSTHYLKAFGIGDVWVAVGWSSDVLPAVKRMS 223 (380)
Q Consensus 155 ~~~G~~~~~~~~----~~~~~-~~~~~~~~~L~~l~~----~v~~--~~~~~~~~~~~~Gev~~~~~~s~~~~~~~~~~~ 223 (380)
...|..+.+.+. ...+. ....++.+++.++.. .+.. .+.++..+.|.+|+++|.+.++..+..+.+.+.
T Consensus 198 ~~~G~~~~~~~~~~~~~~~~~~~~~~~al~~~~~l~~g~~~~~~~~~~~~~~~~~~f~~G~~am~~~g~w~~~~~~~~~~ 277 (416)
T 2xd3_A 198 AGNGAYVFGQNGKDAKDIGLANDGSIVGINYAKSWYEKWPKGMQDTEGAGNLIQTQFQEGKTAAIIDGPWKAQAFKDAKV 277 (416)
T ss_dssp HHTTCEEEHHHHTEEEEEETTSHHHHHHHHHHHHHHTTSCGGGGCSSCHHHHHHHHHHTTCCSEEEECGGGHHHHHHTTC
T ss_pred HhhCCcccCCCCCcccccccCCHHHHHHHHHHHHHHhcCCCccccccccHHHHHHHHhcCCeEEEecCcchhhhHHhcCC
Confidence 456654321100 00111 114466777777641 2222 123456789999999999988877766666667
Q ss_pred CcEEE-ccC--CC----ccceeeeEEEeCCCCCcccccCCCCCCChHHHHHHHHHHhhHHhhchhhhh
Q 016927 224 NVAVV-VPK--SG----ASLWADLWAIPAASRLETKQIGGRVRGPSPLIHQWIEFCLQTARALPFKQE 284 (380)
Q Consensus 224 ~i~~~-~P~--eG----~~~~~d~~~I~k~s~~~~~~~~~~~~~~~~~A~~fi~fllspe~~~~~~~~ 284 (380)
+++++ +|. +| ...+..+++|+++++|++ +|++||+|+++++.|..+++.
T Consensus 278 ~~~~~~~P~~~~g~~~~~~~~~~~~~I~~~s~~~e------------~A~~fi~~l~s~e~~~~~~~~ 333 (416)
T 2xd3_A 278 NYGVATIPTLPNGKEYAAFGGGKAWVIPQAVKNLE------------ASQKFVDFLVATEQQKVLYDK 333 (416)
T ss_dssp CEEEECCCBCTTSCCCCCEEEEEEEECBTTCSCHH------------HHHHHHHHHHSHHHHHHHHHH
T ss_pred ceEEEeCCCCCCCCcccccccceEEEEeCCCCCHH------------HHHHHHHHHcCHHHHHHHHHh
Confidence 88887 675 24 234567899999999998 999999999999999998865
No 48
>1hsj_A Fusion protein consisting of staphylococcus accessary regulator protein R and maltose...; novel fold for DNA binding; HET: GLC; 2.30A {Escherichia coli} SCOP: a.4.5.28 c.94.1.1
Probab=99.85 E-value=9.7e-21 Score=191.72 Aligned_cols=218 Identities=16% Similarity=0.170 Sum_probs=152.6
Q ss_pred CccEEEeCcHHHHHHHHcCcccccccCCCccccCCCChhhHHHHhhhCCCccCCCCCEEEeecccceeEEEEeccccccC
Q 016927 41 AADLVSVGDSWLSFAIKKRLIEPIAGAEDQDWFKCLSHKWKVYLRRNDAGEIDPRGKIWAAPYRWGTMVIAYKKSKFRKH 120 (380)
Q Consensus 41 ~~Dvv~~~~~~~~~~~~~gll~pld~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~Y~vP~~~~~~gi~Yn~d~~~~~ 120 (380)
.|||+.++..++..+++.|+|+||+... .. .+++.+..++. ..+ +|+.||+|+..++.+++||+|+|++
T Consensus 56 ~pDv~~~~~~~~~~~~~~g~l~~L~~~~--~~---~~~~~~~~~~~---~~~--dGk~ygvP~~~~~~~l~YNkdl~~~- 124 (487)
T 1hsj_A 56 GPDIIFWAHDRFGGYAQSGLLAEITPDK--AF---QDKLYPFTWDA---VRY--NGKLIAYPIAVEALSLIYNKDLLPN- 124 (487)
T ss_dssp SCSEEEEETTTHHHHHHHTCBCCBCCCH--HH---HTTBCHHHHHH---TEE--TTEECEEEEEEECCEEEEEGGGCSS-
T ss_pred CCcEEEeCcHhHHHHHHCCCeecCCcch--hh---hhhcCHHHHHh---eeE--CCEEEEeeeecceeEEEEEhhhhcC-
Confidence 5999999888999999999999998631 11 23333444332 234 4999999999999999999999997
Q ss_pred CCCCCCCHHHhcC--cccc--CceeeecCh--hHHHHHHHHHcCCCCCC-----CCh-hhhhc-cchHHHHHHHHHHhhh
Q 016927 121 NLAPIEDWKDLWR--PELA--GRISMVNSP--REVIGSVLKYMGASYNS-----NNI-DLQVA-GGKISVQQNLALLANQ 187 (380)
Q Consensus 121 g~~~p~sW~dL~~--~~~~--gki~~~~~~--~~~~~~al~~~G~~~~~-----~~~-~~~~~-~~~~~~~~~L~~l~~~ 187 (380)
+|+||+||++ .+++ |++++.... ...+...+...|+.+.+ .+. ...+. ....++.+++.++...
T Consensus 125 ---~P~Twdel~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~Gg~~~~~~~g~~~~~~~~~~~~~~~~al~~~~~l~~~ 201 (487)
T 1hsj_A 125 ---PPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPLIAADGGYAFKYENGKYDIKDVGVDNAGAKAGLTFLVDLIKN 201 (487)
T ss_dssp ---CCSBSTTSHHHHHHHTTTTCEEECCCSSSHHHHHHHHHHTTCCSEEECSSSEEEEEETTSSHHHHHHHHHHHHHHHT
T ss_pred ---CCCCHHHHHHHHHHHhcCCcceeeecCCchHHHHHHHHhcCCeecccccccccccccCCCCHHHHHHHHHHHHHHHC
Confidence 8999999998 4555 666554322 12223334556665422 010 01111 1244667777776532
Q ss_pred --cc-cccchhHHHHhHcCCEEEEEechhcHHHHHHcCCCcEEE-ccC-CC----ccceeeeEEEeCCCCCcccccCCCC
Q 016927 188 --AR-LFDSTHYLKAFGIGDVWVAVGWSSDVLPAVKRMSNVAVV-VPK-SG----ASLWADLWAIPAASRLETKQIGGRV 258 (380)
Q Consensus 188 --v~-~~~~~~~~~~~~~Gev~~~~~~s~~~~~~~~~~~~i~~~-~P~-eG----~~~~~d~~~I~k~s~~~~~~~~~~~ 258 (380)
+. ....++..+.|.+|+++|.+.++.....+.+.+.+++++ +|. +| ...+..+++|+++++|++
T Consensus 202 g~~~~~~~~~~~~~~f~~G~~am~~~g~w~~~~~~~~~~~~~~~~~P~~~g~~~~~~~~~~~~~I~~~s~~~e------- 274 (487)
T 1hsj_A 202 KHMNADTDYSIAEAAFNKGETAMTINGPWAWSNIDTSKVNYGVTVLPTFKGQPSKPFVGVLSAGINAASPNKE------- 274 (487)
T ss_dssp TSSCTTCCHHHHHHHHHTSSEEEEEECGGGHHHHHHTTCCEEEECCCBBTTBCCCCCBEEEEEEEBSSCSCHH-------
T ss_pred CCCCCCCCchhHHHHHHcCCeeEEecCCcchhhHHhcCCCeeEecCCCCCCCCCCccccceEEEEECCCCCHH-------
Confidence 11 122345678999999999998887776666667788887 675 33 345677899999999998
Q ss_pred CCChHHHHHHH-HHHhhHHhhchhhhh
Q 016927 259 RGPSPLIHQWI-EFCLQTARALPFKQE 284 (380)
Q Consensus 259 ~~~~~~A~~fi-~fllspe~~~~~~~~ 284 (380)
+|++|| +|+++|+.|..++..
T Consensus 275 -----aA~~fl~~~l~s~e~~~~~~~~ 296 (487)
T 1hsj_A 275 -----LAKEFLENYLLTDEGLEAVNKD 296 (487)
T ss_dssp -----HHHHHHHHTTTSHHHHHHHHHH
T ss_pred -----HHHHHHHHHHcCHHHHHHHHHh
Confidence 999999 999999999998865
No 49
>3h3g_A Fusion protein of maltose-binding periplasmic DOM human parathyroid hormone receptor...; GPCR, extracellular domain, PTHRP, PTH, PThr1, sugar transpo transport, membrane protein; HET: MAL; 1.94A {Escherichia coli} PDB: 3c4m_A* 3l2j_A*
Probab=99.85 E-value=1.1e-20 Score=194.01 Aligned_cols=224 Identities=16% Similarity=0.140 Sum_probs=153.8
Q ss_pred CccEEEeCcHHHHHHHHcCcccccccCCCccccCCCChhhHHHHhhhCCCccCCCCCEEEeecccceeEEEEeccccccC
Q 016927 41 AADLVSVGDSWLSFAIKKRLIEPIAGAEDQDWFKCLSHKWKVYLRRNDAGEIDPRGKIWAAPYRWGTMVIAYKKSKFRKH 120 (380)
Q Consensus 41 ~~Dvv~~~~~~~~~~~~~gll~pld~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~Y~vP~~~~~~gi~Yn~d~~~~~ 120 (380)
.|||+.++..++..+++.|+|+||+... +. .+++.+..++. ..+ +|+.||+|+..++.+|+||+++|++
T Consensus 58 ~PDv~~~~~~~~~~~~~~G~l~~L~~~~--~~---~~~~~~~~~~~---~~~--dGk~YglP~~~~~~~l~YNkdl~~~- 126 (539)
T 3h3g_A 58 GPDIIFWAHDRFGGYAQSGLLAEITPDK--AF---QDKLYPFTWDA---VRY--NGKLIAYPIAVEALSLIYNKDLLPN- 126 (539)
T ss_dssp SCSEEEEEGGGHHHHHHTTCBCCCCCCH--HH---HTTBCHHHHHH---TEE--TTEECSEEEEEECCEEEEETTTCSS-
T ss_pred CCeEEEECchhHHHHHHCCceecCCccH--HH---HhhcCHHHHHh---ceE--CCEEEEEeeecCceEEEEEhHHhcC-
Confidence 5999999989999999999999999641 11 23333444432 234 4999999999999999999999996
Q ss_pred CCCCCCCHHHhcCc--cc--cCceeeecCh--hHHHHHHHHHcCCCCCCCCh------hhhhc-cchHHHHHHHHHHhhh
Q 016927 121 NLAPIEDWKDLWRP--EL--AGRISMVNSP--REVIGSVLKYMGASYNSNNI------DLQVA-GGKISVQQNLALLANQ 187 (380)
Q Consensus 121 g~~~p~sW~dL~~~--~~--~gki~~~~~~--~~~~~~al~~~G~~~~~~~~------~~~~~-~~~~~~~~~L~~l~~~ 187 (380)
+|+||++|++. ++ +|+..+.-.. ...+...+...|......+. ...+. ....++.+.+.++...
T Consensus 127 ---~P~Twdel~~~a~~l~~~g~~~~~~~~~~~~~~~~~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~l~~~ 203 (539)
T 3h3g_A 127 ---PPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPLIAADGGYAFKYENGKYDIKDVGVDNAGAKAGLTFLVDLIKN 203 (539)
T ss_dssp ---CCSBGGGHHHHHHHHHTTTCEEECCCSSSHHHHHHHHHHTTCEEEEEETTEEEEEEEESSSHHHHHHHHHHHHHHHT
T ss_pred ---CCCCHHHHHHHHHHHHhCCCceEEeecCcHHHHHHHHHhcCCceeecccccccccccCCCCHHHHHHHHHHHHHHHc
Confidence 89999999985 33 3554433211 22222334455654321100 00011 1144666777666542
Q ss_pred --cc-cccchhHHHHhHcCCEEEEEechhcHHHHHHcCCCcEEE-ccCC-----CccceeeeEEEeCCCCCcccccCCCC
Q 016927 188 --AR-LFDSTHYLKAFGIGDVWVAVGWSSDVLPAVKRMSNVAVV-VPKS-----GASLWADLWAIPAASRLETKQIGGRV 258 (380)
Q Consensus 188 --v~-~~~~~~~~~~~~~Gev~~~~~~s~~~~~~~~~~~~i~~~-~P~e-----G~~~~~d~~~I~k~s~~~~~~~~~~~ 258 (380)
+. ....++..+.|.+|+++|.+.++..+..+.+.+.+++++ +|.. +...+..+++|+++++|++
T Consensus 204 g~~~~~~~~~~~~~~f~~Gk~am~~~g~w~~~~~~~~~~~~~~~~~P~~~g~~~~~~~g~~~~~I~~~s~~~e------- 276 (539)
T 3h3g_A 204 KHMNADTDYSIAEAAFNKGETAMTINGPWAWSNIDTSKVNYGVTVLPTFKGQPSKPFVGVLSAGINAASPNKE------- 276 (539)
T ss_dssp TSSCTTCCHHHHHHHHHTTSEEEEEECGGGHHHHHHHTCCEEEECCCBBTTBCCCCEEEEEEEEEBTTCSCHH-------
T ss_pred CCCCCCCChhHHHHHHHCCCeeEEEecchhhhhHHHcCCcEEEEECCCCCCCCCcccccceEEEEECCCCCHH-------
Confidence 11 123356778999999999999988887777777888886 5741 2345667899999999998
Q ss_pred CCChHHHHHHHH-HHhhHHhhchhhhhhcCCCCC
Q 016927 259 RGPSPLIHQWIE-FCLQTARALPFKQEVIPGASP 291 (380)
Q Consensus 259 ~~~~~~A~~fi~-fllspe~~~~~~~~~~~~~~p 291 (380)
+|++||+ |+++++.|..+... .++..|
T Consensus 277 -----aA~~Fl~~~l~s~e~q~~~~~~-~~~~~p 304 (539)
T 3h3g_A 277 -----LAKEFLENYLLTDEGLEAVNKD-KPLGAV 304 (539)
T ss_dssp -----HHHHHHHHTTTSHHHHHHHHHH-SCCCEE
T ss_pred -----HHHHHHHHHhcCHHHHHHHHhc-CCCCCc
Confidence 9999996 99999999998764 333334
No 50
>3osr_A Maltose-binding periplasmic protein, green fluore protein; engineered protein, sensor protein, fluorescent protein, MBP maltose sensor; HET: C12 MAL; 2.00A {Escherichia coli}
Probab=99.84 E-value=1.3e-20 Score=197.56 Aligned_cols=225 Identities=16% Similarity=0.147 Sum_probs=157.1
Q ss_pred CccEEEeCcHHHHHHHHcCcccccccCCCccccCCCChhhHHHHhhhCCCccCCCCCEEEeecccceeEEEEeccccccC
Q 016927 41 AADLVSVGDSWLSFAIKKRLIEPIAGAEDQDWFKCLSHKWKVYLRRNDAGEIDPRGKIWAAPYRWGTMVIAYKKSKFRKH 120 (380)
Q Consensus 41 ~~Dvv~~~~~~~~~~~~~gll~pld~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~Y~vP~~~~~~gi~Yn~d~~~~~ 120 (380)
.|||+.++..++..+++.|+|+||+... ... +++.+..++. ..+ +|+.||+|+.+++.+|+||+++|++
T Consensus 92 ~PDV~~~~~~~~~~~~~~G~L~pLdd~~--~~~---~~~~~~~~~~---~~~--dGk~YglP~~~~~~~l~YNkdlfee- 160 (653)
T 3osr_A 92 GPDIIFWAHDRFGGYAQSGLLAEITPDK--AFQ---DKLYPFTWDA---VRY--NGKLIAYPIAVEALSLIYNKDLLPN- 160 (653)
T ss_dssp SCSEEEEEGGGHHHHHHTTCBCCCCCCH--HHH---TTBCHHHHHH---TEE--TTEECSEEEEEECCEEEEETTTCSS-
T ss_pred CCEEEEECcHHHHHHHHCCCEEECCCcH--HHH---hhCCHHHHHh---eEE--CCEEEEEEecCceeEEEEEhHHhhC-
Confidence 5999999888999999999999999641 122 2333333332 234 4999999999999999999999986
Q ss_pred CCCCCCCHHHhcCc--cc--cCceeeecCh--hHHHHHHHHHcCCCCCCCCh------hhhhc-cchHHHHHHHHHHhhh
Q 016927 121 NLAPIEDWKDLWRP--EL--AGRISMVNSP--REVIGSVLKYMGASYNSNNI------DLQVA-GGKISVQQNLALLANQ 187 (380)
Q Consensus 121 g~~~p~sW~dL~~~--~~--~gki~~~~~~--~~~~~~al~~~G~~~~~~~~------~~~~~-~~~~~~~~~L~~l~~~ 187 (380)
+|+||+||++. ++ +|+..+.... ...+...+...|......+. ...+. ....++.+.+.++...
T Consensus 161 ---~P~TWdEL~~~akklk~~G~~~~~~~~~~~~~~~~~l~~~Gg~~~~~~~~~~d~~~~~~d~~~~~~ale~l~~L~~~ 237 (653)
T 3osr_A 161 ---PPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPLIAADGGYAFKYENGKYDIKDVGVDNAGAKAGLTFLVDLIKN 237 (653)
T ss_dssp ---CCSBSTTHHHHHHHHHTTTCEEECCCCSSHHHHHHHHHHTTCEEEEEETTEEEEEEEESSSHHHHHHHHHHHHHHHT
T ss_pred ---CCCCHHHHHHHHHHHHhCCCceeEeccCchHHHHHHHHHcCCeeeeccCcccccCccccCCHHHHHHHHHHHHHHHc
Confidence 89999999985 33 3554433211 12222334455653211100 00010 1145667777777543
Q ss_pred --cc-cccchhHHHHhHcCCEEEEEechhcHHHHHHcCCCcEEE-ccC-----CCccceeeeEEEeCCCCCcccccCCCC
Q 016927 188 --AR-LFDSTHYLKAFGIGDVWVAVGWSSDVLPAVKRMSNVAVV-VPK-----SGASLWADLWAIPAASRLETKQIGGRV 258 (380)
Q Consensus 188 --v~-~~~~~~~~~~~~~Gev~~~~~~s~~~~~~~~~~~~i~~~-~P~-----eG~~~~~d~~~I~k~s~~~~~~~~~~~ 258 (380)
+. ..+.++..+.|.+|+++|.+.|+..+..+.+.+.+++++ +|. .+...+.++++|+++++|++
T Consensus 238 g~~~~~~~~~~~~~~f~sGk~am~~~gsw~~~~l~~~~~~~gv~~~P~~~g~~~~~~~g~~~~aI~k~Skn~e------- 310 (653)
T 3osr_A 238 KHMNADTDYSIAEAAFNKGETAMTINGPWAWSNIDTSKVNYGVTVLPTFKGQPSKPFVGVLSAGINAASPNKE------- 310 (653)
T ss_dssp TSSCTTCCHHHHHHHHHTTSEEEEEECGGGHHHHHHHTCCEEEECCCBBTTBCCCCEEEEEEEEEBTTCSCHH-------
T ss_pred CCCCCCCChHHHHHHHHCCCEEEEEeChhHHHHHhhcCCCEEEEEcCCCCCCCcceeeccEEEEEECCCCCHH-------
Confidence 11 123356778999999999999999888877778889987 675 34567778999999999998
Q ss_pred CCChHHHHHHHH-HHhhHHhhchhhhhhcCCCCCC
Q 016927 259 RGPSPLIHQWIE-FCLQTARALPFKQEVIPGASPS 292 (380)
Q Consensus 259 ~~~~~~A~~fi~-fllspe~~~~~~~~~~~~~~p~ 292 (380)
+|++||+ |++++|.|..+++. .++..|+
T Consensus 311 -----aA~~FI~nfl~S~E~q~~~a~~-~g~~~P~ 339 (653)
T 3osr_A 311 -----LAKEFLENYLLTDEGLEAVNKD-KPLGAVA 339 (653)
T ss_dssp -----HHHHHHHHTTSSHHHHHHHHHH-SCCCEES
T ss_pred -----HHHHHHHHHccCHHHHHHHHHh-cCCCCCC
Confidence 9999997 99999999999875 4444453
No 51
>3csg_A MBP, maltose-binding protein monobody YS1 fusion, MMBP; engineered binding protein, antibody mimic, synthetic protein interface; 1.80A {Escherichia coli} PDB: 2obg_A 3csb_A* 3a3c_A* 3d4g_A* 3d4c_A* 3ef7_A*
Probab=99.84 E-value=1.2e-20 Score=189.91 Aligned_cols=243 Identities=15% Similarity=0.160 Sum_probs=162.9
Q ss_pred CceEEEEEEcccHHHHHHhcccchhHhhcCCCCCCCccEEEeCcHHHHHHHHcCcccccccCCCccccCCCChhhHHHHh
Q 016927 6 KRLKFQMNLCASIDGIVNNLSVPFNKVKAKSAPYMAADLVSVGDSWLSFAIKKRLIEPIAGAEDQDWFKCLSHKWKVYLR 85 (380)
Q Consensus 6 ~~v~v~~~~~gs~~~~~~~~~~~~~kl~ag~~~~~~~Dvv~~~~~~~~~~~~~gll~pld~~~~~~~~~~~~~~~~~~~~ 85 (380)
.+|+|+.+..++.+ +++. +.+.+| ..|||+.++..++..+++.|+|+||+... . ..+++.+..++
T Consensus 29 pgi~V~~~~~~~~~---~kl~---~~~asg----~~pDv~~~~~~~~~~~~~~g~l~~L~~~~--~---~~~~~~~~~~~ 93 (461)
T 3csg_A 29 TGIKVTVEHPDKLE---EKFP---QVAATG----DGPDIIFWAHDRFGGYAQSGLLAEITPDK--A---FQDKLYPFTWD 93 (461)
T ss_dssp HCCCEEEECCTTHH---HHHH---HHHTTT----CSCSEEEEEHHHHHHHHHTTCBCCCCCCH--H---HHTTBCHHHHH
T ss_pred cCceEEEEECccHH---HHHH---HHhcCC----CCCcEEEECchhHHHHHHCCCcccCCccH--H---HHhhccHHhHh
Confidence 34666666666532 2211 112222 25999999888999999999999998631 1 12333344443
Q ss_pred hhCCCccCCCCCEEEeecccceeEEEEeccccccCCCCCCCCHHHhcC--cccc--CceeeecChh--HHHHHHHHHcCC
Q 016927 86 RNDAGEIDPRGKIWAAPYRWGTMVIAYKKSKFRKHNLAPIEDWKDLWR--PELA--GRISMVNSPR--EVIGSVLKYMGA 159 (380)
Q Consensus 86 ~~~~~~~d~~g~~Y~vP~~~~~~gi~Yn~d~~~~~g~~~p~sW~dL~~--~~~~--gki~~~~~~~--~~~~~al~~~G~ 159 (380)
. ..+ +|+.||+|+..++.+|+||+|+|++ +|+||+||++ .+++ |++.+..... ..+...+...|.
T Consensus 94 ~---~~~--dGk~y~vP~~~~~~~l~YNkdl~~~----~P~Twdel~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~Gg 164 (461)
T 3csg_A 94 A---VRY--NGKLIAYPIAVEALSLIYNKDLLPN----PPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPLIAADGG 164 (461)
T ss_dssp T---TEE--TTEECSEEEEEECCEEEEETTTCSS----CCSBGGGHHHHHHHHHTTTCEEECCCTTCHHHHHHHHHHTTC
T ss_pred h---eEE--CCEEEEeeccccceEEEEEhhhhcc----CCcCHHHHHHHHHHHhhCCCceeEecCCchHHHHHHHHhcCC
Confidence 2 234 5999999999999999999999997 8999999998 3554 6665543221 222333455665
Q ss_pred CCCC-----CCh-hhhhc-cchHHHHHHHHHHhhh--cc-cccchhHHHHhHcCCEEEEEechhcHHHHHHcCCCcEEE-
Q 016927 160 SYNS-----NNI-DLQVA-GGKISVQQNLALLANQ--AR-LFDSTHYLKAFGIGDVWVAVGWSSDVLPAVKRMSNVAVV- 228 (380)
Q Consensus 160 ~~~~-----~~~-~~~~~-~~~~~~~~~L~~l~~~--v~-~~~~~~~~~~~~~Gev~~~~~~s~~~~~~~~~~~~i~~~- 228 (380)
.+.+ .+. ...+. ....++.+++.+|... +. ....++..+.|.+|+++|.+.++..+..+.+.+.+++++
T Consensus 165 ~~~~~~~g~~~~~~~~~~~~~~~~al~~~~~l~~~g~~~~~~~~~~~~~~f~~G~~am~~~g~w~~~~~~~~~~~~~~~~ 244 (461)
T 3csg_A 165 YAFKYENGKYDIKDVGVDNAGAKAGLTFLVDLIKNKHMNADTDYSIAEAAFNKGETAMTINGPWAWSNIDTSKVNYGVTV 244 (461)
T ss_dssp EEEEECSSSEEEEEEESSSHHHHHHHHHHHHHHHTTSSCTTCCHHHHHHHHHTTCEEEEEECGGGHHHHHHHTCCEEEEC
T ss_pred eEeecccCcccccccCcCCHHHHHHHHHHHHHHHcCCCCCCCCchhHHHHHhcCCeeEEecCcchHHHHHhcCCceEEEe
Confidence 4321 010 00111 1245667777776532 21 122346678999999999998887766666567788887
Q ss_pred ccC-CC----ccceeeeEEEeCCCCCcccccCCCCCCChHHHHHHH-HHHhhHHhhchhhhh
Q 016927 229 VPK-SG----ASLWADLWAIPAASRLETKQIGGRVRGPSPLIHQWI-EFCLQTARALPFKQE 284 (380)
Q Consensus 229 ~P~-eG----~~~~~d~~~I~k~s~~~~~~~~~~~~~~~~~A~~fi-~fllspe~~~~~~~~ 284 (380)
+|. +| ...+..+++|+++++|++ +|++|| +|+++++.|..+++.
T Consensus 245 ~P~~~g~~~~~~~~~~~~~I~~~s~~~e------------~A~~fl~~~l~s~e~q~~~~~~ 294 (461)
T 3csg_A 245 LPTFKGQPSKPFVGVLSAGINAASPNKE------------LAKEFLENYLLTDEGLEAVNKD 294 (461)
T ss_dssp CCEETTEECCCEEEEEEEEEBTTCTTHH------------HHHHHHHHTTSSHHHHHHHHHH
T ss_pred CCCCCCCCCCceecceEEEEeCCCCCHH------------HHHHHHHHHhcCHHHHHHHHHh
Confidence 675 33 245667899999999998 999999 999999999998865
No 52
>3o3u_N Maltose-binding periplasmic protein, advanced Gly END product-specific receptor; RAGE, AGER, scavenger receptor; HET: MLR; 1.50A {Escherichia coli} PDB: 3s59_A 3s58_A 3cjj_A 2l7u_A* 2e5e_A
Probab=99.84 E-value=3.1e-20 Score=191.03 Aligned_cols=218 Identities=16% Similarity=0.143 Sum_probs=151.9
Q ss_pred CccEEEeCcHHHHHHHHcCcccccccCCCccccCCCChhhHHHHhhhCCCccCCCCCEEEeecccceeEEEEeccccccC
Q 016927 41 AADLVSVGDSWLSFAIKKRLIEPIAGAEDQDWFKCLSHKWKVYLRRNDAGEIDPRGKIWAAPYRWGTMVIAYKKSKFRKH 120 (380)
Q Consensus 41 ~~Dvv~~~~~~~~~~~~~gll~pld~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~Y~vP~~~~~~gi~Yn~d~~~~~ 120 (380)
.|||+.++..++..+++.|+|+||+... +. .+++.+..++. ..+ +|+.||+|+..++.+|+||+|+|++
T Consensus 56 ~pDv~~~~~~~~~~~~~~g~l~~L~~~~--~~---~~~~~~~~~~~---~~~--dG~~y~~P~~~~~~~l~ynkdl~~~- 124 (581)
T 3o3u_N 56 GPDIIFWAHDRFGGYAQSGLLAEITPDK--AF---QDKLYPFTWDA---VRY--NGKLIAYPIAVEALSLIYNKDLLPN- 124 (581)
T ss_dssp SCSEEEEEGGGHHHHHHTTCBCCCCCCH--HH---HTTBCHHHHHH---TEE--TTEECSEEEEEECCEEEEETTTCSS-
T ss_pred CCcEEEECchhHHHHHhCCccccCCchh--hh---hhccChHHHHh---eEE--CCEEEEEeeeccceEEEEEhHHhhc-
Confidence 5999999989999999999999999641 12 23333444432 234 4999999999999999999999996
Q ss_pred CCCCCCCHHHhcCc--cc--cCceeeecCh--hHHHHHHHHHcCCCCCCCCh------hhhhc-cchHHHHHHHHHHhhh
Q 016927 121 NLAPIEDWKDLWRP--EL--AGRISMVNSP--REVIGSVLKYMGASYNSNNI------DLQVA-GGKISVQQNLALLANQ 187 (380)
Q Consensus 121 g~~~p~sW~dL~~~--~~--~gki~~~~~~--~~~~~~al~~~G~~~~~~~~------~~~~~-~~~~~~~~~L~~l~~~ 187 (380)
+|+||+||++. ++ +|+..+.-.. ...+...+...|+.....+. ...+. ....++.+++.++...
T Consensus 125 ---~P~Twdel~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~l~~~ 201 (581)
T 3o3u_N 125 ---PPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPLIAADGGYAFKYENGKYDIKDVGVDNAGAKAGLTFLVDLIKN 201 (581)
T ss_dssp ---CCSBGGGHHHHHHHHHTTTCEEECCCCSSHHHHHHHHHHTTCEEEEEETTEEEEEEEESSSHHHHHHHHHHHHHHHT
T ss_pred ---CCCCHHHHHHHHHHHhhCCCceEEeecCChHHHHHHHHhcCCceeecccCcccccccccCCHHHHHHHHHHHHHHhc
Confidence 89999999985 33 3554432211 22222334455654321110 00011 1144566677666542
Q ss_pred --cc-cccchhHHHHhHcCCEEEEEechhcHHHHHHcCCCcEEE-ccCC-----CccceeeeEEEeCCCCCcccccCCCC
Q 016927 188 --AR-LFDSTHYLKAFGIGDVWVAVGWSSDVLPAVKRMSNVAVV-VPKS-----GASLWADLWAIPAASRLETKQIGGRV 258 (380)
Q Consensus 188 --v~-~~~~~~~~~~~~~Gev~~~~~~s~~~~~~~~~~~~i~~~-~P~e-----G~~~~~d~~~I~k~s~~~~~~~~~~~ 258 (380)
+. ..+.++..+.|.+|+++|.+.++..+..+.+.+.+++++ +|.. +...+..+++|+++++|++
T Consensus 202 g~~~~~~~~~~~~~~f~~G~~a~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~i~~~s~~~e------- 274 (581)
T 3o3u_N 202 KHMNADTDYSIAEAAFNKGETAMTINGPWAWSNIDTSKVNYGVTVLPTFKGQPSKPFVGVLSAGINAASPNKE------- 274 (581)
T ss_dssp TSSCTTCCHHHHHHHHHTTSEEEEEECGGGHHHHHHHTCCEEEECCCBBTTBCCCCEEEEEEEEEBTTCSCHH-------
T ss_pred CcCCCCCChhhHhhHHhcCCEEEEeccchhhchHhhcCCceEEEECCCCCCCCCcccccceEEEEECCCCCHH-------
Confidence 11 123356778999999999999998887777777888876 5742 2345678899999999998
Q ss_pred CCChHHHHHHHH-HHhhHHhhchhhhh
Q 016927 259 RGPSPLIHQWIE-FCLQTARALPFKQE 284 (380)
Q Consensus 259 ~~~~~~A~~fi~-fllspe~~~~~~~~ 284 (380)
+|++||+ |++++|.|..+.+.
T Consensus 275 -----~A~~fl~~~l~s~e~~~~~~~~ 296 (581)
T 3o3u_N 275 -----LAKEFLENYLLTDEGLEAVNKD 296 (581)
T ss_dssp -----HHHHHHHHTTSSHHHHHHHHHH
T ss_pred -----HHHHHHHHHhcCHHHHHHHhhc
Confidence 9999996 99999999998865
No 53
>3f5f_A Maltose-binding periplasmic protein, heparan sulfate 2-O-sulfotransferase 1; maltose binding protein, fusion, heparan sulfate biosynthesis; HET: GLC A3P; 2.65A {Escherichia coli k-12}
Probab=99.84 E-value=1.8e-20 Score=197.10 Aligned_cols=218 Identities=16% Similarity=0.144 Sum_probs=153.3
Q ss_pred CccEEEeCcHHHHHHHHcCcccccccCCCccccCCCChhhHHHHhhhCCCccCCCCCEEEeecccceeEEEEeccccccC
Q 016927 41 AADLVSVGDSWLSFAIKKRLIEPIAGAEDQDWFKCLSHKWKVYLRRNDAGEIDPRGKIWAAPYRWGTMVIAYKKSKFRKH 120 (380)
Q Consensus 41 ~~Dvv~~~~~~~~~~~~~gll~pld~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~Y~vP~~~~~~gi~Yn~d~~~~~ 120 (380)
.|||+.++..++..+++.|+|+||+... +.. +++.+..++. ..+ +|+.||+|+..++.+++||+|+|++
T Consensus 56 ~PDV~~~~~~~~~~~~~~G~l~~L~~~~--~~~---~~~~~~~~~~---~~~--dGk~YglP~~~~~~~l~YNkdl~~~- 124 (658)
T 3f5f_A 56 GPDIIFWAHDRFGGYAQSGLLAEITPDK--AFQ---DKLYPFTWDA---VRY--NGKLIAYPIAVEALSLIYNKDLLPN- 124 (658)
T ss_dssp SCSEEEEEHHHHHHHHHTTCBCCCCCCH--HHH---TTBCHHHHHH---TEE--TTEECSEEEEEECCEEEEETTTCSS-
T ss_pred CCcEEEECcHhHHHHHHCCCEecCCcch--hhH---hhcCHHHHHH---hEE--CCEEEEEecccCeEEEEEEhHHhhC-
Confidence 4999999999999999999999999641 122 2333334332 234 4999999999999999999999996
Q ss_pred CCCCCCCHHHhcCc--cc--cCceeeecC--hhHHHHHHHHHcCCCCCCCCh------hhhhc-cchHHHHHHHHHHhhh
Q 016927 121 NLAPIEDWKDLWRP--EL--AGRISMVNS--PREVIGSVLKYMGASYNSNNI------DLQVA-GGKISVQQNLALLANQ 187 (380)
Q Consensus 121 g~~~p~sW~dL~~~--~~--~gki~~~~~--~~~~~~~al~~~G~~~~~~~~------~~~~~-~~~~~~~~~L~~l~~~ 187 (380)
+|+||+||++. ++ +|+..+.-. ....+...+...|+.....+. ...+. ....++.+.+.++...
T Consensus 125 ---~P~Twdel~~~a~~l~~~g~~~~~~~~~~~~~~~~~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~l~~~ 201 (658)
T 3f5f_A 125 ---PPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPLIAADGGYAFKYENGKYDIKDVGVDNAGAKAGLTFLVDLIKN 201 (658)
T ss_dssp ---CCSBGGGHHHHHHHHHTTTCEEECCCSSSHHHHHHHHHHTTCEESCCCCSSSEEECEESSSHHHHHHHHHHHHHHHT
T ss_pred ---CCCCHHHHHHHHHHHHhCCCCeEEeecCchHHHHHHHHhcCCeeeecCCCcccccccccCCHHHHHHHHHHHHHHHc
Confidence 89999999985 22 355443221 122233344566664322211 00111 1144566677666542
Q ss_pred --cc-cccchhHHHHhHcCCEEEEEechhcHHHHHHcCCCcEEE-ccCC-----CccceeeeEEEeCCCCCcccccCCCC
Q 016927 188 --AR-LFDSTHYLKAFGIGDVWVAVGWSSDVLPAVKRMSNVAVV-VPKS-----GASLWADLWAIPAASRLETKQIGGRV 258 (380)
Q Consensus 188 --v~-~~~~~~~~~~~~~Gev~~~~~~s~~~~~~~~~~~~i~~~-~P~e-----G~~~~~d~~~I~k~s~~~~~~~~~~~ 258 (380)
+. ..+.++..+.|.+|+++|.+.+++.+..+.+.+.+++++ +|.. +...+.++++|+++++|++
T Consensus 202 g~~~~~~~~~~~~~~f~~Gk~am~~~g~~~~~~~~~~~~~~~~~~~P~~~g~~~~~~~g~~~~~I~~~sk~~e------- 274 (658)
T 3f5f_A 202 KHMNADTDYSIAEAAFNKGETAMTINGPWAWSNIDTSKVNYGVTVLPTFKGQPSKPFVGVLSAGINAASPNKE------- 274 (658)
T ss_dssp TSSCTTCCHHHHHHHHHTTSEEEEEECGGGHHHHHHTTCCEEEECCCBBTTBCCCCEEEEEEEEEBTTCTTHH-------
T ss_pred CCCCCCCCchHHHHHHHCCCEEEEEechhhhHHHHhcCCCEEEEECCCCCCCCCccccCceEEEEECCCCCHH-------
Confidence 11 223456788999999999999998888877777888886 5742 2345678899999999998
Q ss_pred CCChHHHHHHHH-HHhhHHhhchhhhh
Q 016927 259 RGPSPLIHQWIE-FCLQTARALPFKQE 284 (380)
Q Consensus 259 ~~~~~~A~~fi~-fllspe~~~~~~~~ 284 (380)
+|++||+ |+++++.|..+...
T Consensus 275 -----aA~~Fl~~~l~s~e~q~~~~~~ 296 (658)
T 3f5f_A 275 -----LAKEFLENYLLTDEGLEAVNKD 296 (658)
T ss_dssp -----HHHHHHHHTTSSHHHHHHHHHH
T ss_pred -----HHHHHHHHHhcCHHHHHHHHhc
Confidence 9999997 99999999998865
No 54
>3mp6_A MBP, SGF29, maltose-binding periplasmic protein, linker, SAGA associated factor 29; histone, tudor domain, histone binding protei; HET: MLY MAL; 1.48A {Escherichia coli} PDB: 3mp1_A* 3mp8_A*
Probab=99.84 E-value=2e-20 Score=191.49 Aligned_cols=224 Identities=16% Similarity=0.142 Sum_probs=154.3
Q ss_pred CccEEEeCcHHHHHHHHcCcccccccCCCccccCCCChhhHHHHhhhCCCccCCCCCEEEeecccceeEEEEeccccccC
Q 016927 41 AADLVSVGDSWLSFAIKKRLIEPIAGAEDQDWFKCLSHKWKVYLRRNDAGEIDPRGKIWAAPYRWGTMVIAYKKSKFRKH 120 (380)
Q Consensus 41 ~~Dvv~~~~~~~~~~~~~gll~pld~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~Y~vP~~~~~~gi~Yn~d~~~~~ 120 (380)
.|||+.++..++..+++.|+|+||+... ... +++.+..++. ..+ +|+.||+|+..++.+|+||+|+|++
T Consensus 57 ~PDV~~~~~~~~~~~~~~G~l~~L~~~~--~~~---~~~~~~~~~~---~~~--dGk~YglP~~~~~~~l~YNkdl~~~- 125 (522)
T 3mp6_A 57 GPDIIFWAHDRFGGYAQSGLLAEITPDK--AFQ---DKLYPFTWDA---VRY--NGKLIAYPIAVEALSLIYNKDLLPN- 125 (522)
T ss_dssp SCSEEEEEGGGHHHHHHTTCBCCCCCCH--HHH---HTBCHHHHHH---TEE--TTEECSEEEEEECCEEEEETTTCSS-
T ss_pred CCeEEEECChhHHHHHhCCCcccCCcch--hhh---hhcChHhHhh---EEE--CCEEEEEeeeccceEEEEEhHhhcc-
Confidence 5999999999999999999999999641 112 2333333332 234 4999999999999999999999996
Q ss_pred CCCCCCCHHHhcCc--cc--cCceeeecC--hhHHHHHHHHHcCCCCCCCCh------hhhhc-cchHHHHHHHHHHhhh
Q 016927 121 NLAPIEDWKDLWRP--EL--AGRISMVNS--PREVIGSVLKYMGASYNSNNI------DLQVA-GGKISVQQNLALLANQ 187 (380)
Q Consensus 121 g~~~p~sW~dL~~~--~~--~gki~~~~~--~~~~~~~al~~~G~~~~~~~~------~~~~~-~~~~~~~~~L~~l~~~ 187 (380)
+|+||+||++. ++ +|+..+.-. ....+...+...|+.....+. ...+. ....++.+.+.++...
T Consensus 126 ---~P~Twdel~~~a~~l~~~g~~~~~~~~~~~~~~~~~~~~~Gg~~~~~~~~~~d~~~~~~~~~~~~~al~~~~~l~~~ 202 (522)
T 3mp6_A 126 ---PPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPLIAADGGYAFKYENGKYDIKDVGVDNAGAKAGLTFLVDLIKN 202 (522)
T ss_dssp ---CCSBGGGHHHHHHHHHTTTCEEECCCSSSGGGTHHHHHHTTCEEEEEETTEEEEEEEETTSHHHHHHHHHHHHHHHT
T ss_pred ---CCcCHHHHHHHHHHHHhCCCceEEeecCchHHHHHHHHhcCCceeeccccccccCccccCCHHHHHHHHHHHHHHHc
Confidence 89999999985 22 355443211 112222334566654321100 00011 1144666777776543
Q ss_pred --cc-cccchhHHHHhHcCCEEEEEechhcHHHHHHcCCCcEEE-ccCC-----CccceeeeEEEeCCCCCcccccCCCC
Q 016927 188 --AR-LFDSTHYLKAFGIGDVWVAVGWSSDVLPAVKRMSNVAVV-VPKS-----GASLWADLWAIPAASRLETKQIGGRV 258 (380)
Q Consensus 188 --v~-~~~~~~~~~~~~~Gev~~~~~~s~~~~~~~~~~~~i~~~-~P~e-----G~~~~~d~~~I~k~s~~~~~~~~~~~ 258 (380)
+. ..+.++..+.|.+|+++|.+.++..+..+.+.+.+++++ +|.. +...+..+++|+++++|++
T Consensus 203 g~~~~~~~~~~~~~~f~~Gk~am~~~g~~~~~~~~~~~~~~~~~~~P~~~g~~~~~~~g~~~~~I~~~sk~~e------- 275 (522)
T 3mp6_A 203 KHMNADTDYSIAEAAFNKGETAMTINGPWAWSNIDTSKVNYGVTVLPTFKGQPSKPFVGVLSAGINAASPNKE------- 275 (522)
T ss_dssp TSSCTTCCHHHHHHHHHTTSEEEEEECGGGHHHHHHSSCCEEEECCCBBTTBCCCCEEEEEEEEEBTTCTTHH-------
T ss_pred CCCCCCCChHHHhhHHhcCCEeEEeccCcchhhhhhcCCceEEEECCCCCCCCCcccccceEEEEECCCCCHH-------
Confidence 11 223356778999999999999998888777777788886 5742 2345678899999999998
Q ss_pred CCChHHHHHHHH-HHhhHHhhchhhhhhcCCCCC
Q 016927 259 RGPSPLIHQWIE-FCLQTARALPFKQEVIPGASP 291 (380)
Q Consensus 259 ~~~~~~A~~fi~-fllspe~~~~~~~~~~~~~~p 291 (380)
+|++||+ |+++++.|..+++. .++..|
T Consensus 276 -----aA~~Fi~~~l~s~e~q~~~~~~-~~~~~p 303 (522)
T 3mp6_A 276 -----LAKEFLENYLLTDEGLEAVNKD-KPLGAV 303 (522)
T ss_dssp -----HHHHHHHHTTSSHHHHHHHHHH-SCCSEE
T ss_pred -----HHHHHHHHHhcCHHHHHHHHhc-CCCCcc
Confidence 9999995 99999999998865 333334
No 55
>2zxt_A Maltose-binding periplasmic protein, linker, MITO intermembrane space import AND...; disulfide bond, alpha helix, fusion, sugar transport; HET: MAL; 3.00A {Escherichia coli}
Probab=99.84 E-value=8.9e-21 Score=191.44 Aligned_cols=218 Identities=16% Similarity=0.163 Sum_probs=151.7
Q ss_pred CccEEEeCcHHHHHHHHcCcccccccCCCccccCCCChhhHHHHhhhCCCccCCCCCEEEeecccceeEEEEeccccccC
Q 016927 41 AADLVSVGDSWLSFAIKKRLIEPIAGAEDQDWFKCLSHKWKVYLRRNDAGEIDPRGKIWAAPYRWGTMVIAYKKSKFRKH 120 (380)
Q Consensus 41 ~~Dvv~~~~~~~~~~~~~gll~pld~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~Y~vP~~~~~~gi~Yn~d~~~~~ 120 (380)
.|||+.++..++..+++.|+|+||+... . ..+++.+.+++. ..+ +|+.||||+..++.+|+||+++|++
T Consensus 56 ~PDv~~~~~~~~~~~~~~G~l~~L~~~~--~---~~~~~~~~~~~~---~~~--dGk~YgvP~~~~~~~l~YNkdlf~~- 124 (465)
T 2zxt_A 56 GPDIIFWAHDRFGGYAQSGLLAEITPDK--A---FQDKLYPFTWDA---VRY--NGKLIAYPIAVEALSLIYNKDLLPN- 124 (465)
T ss_dssp CCSEEEEEGGGHHHHHHTTCBCCCCCCH--H---HHTTBCHHHHHT---TBS--SSSBCSEEEEEECCEEECBTTTBSS-
T ss_pred CCeEEEECchhHHHHHHCCceecCCcch--h---hhhhccHHhHhh---eEE--CCEEEEeeccccceEEEEEhHhhcC-
Confidence 5999999888999999999999998631 1 123333444432 234 5999999999999999999999997
Q ss_pred CCCCCCCHHHhcC--cccc--CceeeecCh--hHHHHHHHHHcCCCCCC-----CCh-hhhhc-cchHHHHHHHHHHhhh
Q 016927 121 NLAPIEDWKDLWR--PELA--GRISMVNSP--REVIGSVLKYMGASYNS-----NNI-DLQVA-GGKISVQQNLALLANQ 187 (380)
Q Consensus 121 g~~~p~sW~dL~~--~~~~--gki~~~~~~--~~~~~~al~~~G~~~~~-----~~~-~~~~~-~~~~~~~~~L~~l~~~ 187 (380)
+|+||+||++ .+++ |++++.... ...+...+...|+.+.+ .+. ...+. ....++.+++.+|...
T Consensus 125 ---~P~Twdel~~~a~~l~~~G~~g~~~~~~~~~~~~~~~~~~Gg~~~~~~~g~~d~~~~~~~~~~~~~al~~~~~l~~~ 201 (465)
T 2zxt_A 125 ---PPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPLIAADGGYAFKYENGKYDIKDVGVDNAGAKAGLTFLVDLIKN 201 (465)
T ss_dssp ---CCSSSTTSHHHHTTSCSSSCCSBCCCSSSHHHHHHHHHHTTCEEEEEETTEEEEEEEESSSHHHHHHHHHHHHHHHT
T ss_pred ---CCcCHHHHHHHHHHHhcCCcceeEecCcchHHHHHHHHhcCCeecccccccccccccccCCHHHHHHHHHHHHHHHc
Confidence 8999999998 4565 665554322 12223334556654321 010 00111 1144666777776532
Q ss_pred --cc-cccchhHHHHhHcCCEEEEEechhcHHHHHHcCCCcEEE-ccC-CC----ccceeeeEEEeCCCCCcccccCCCC
Q 016927 188 --AR-LFDSTHYLKAFGIGDVWVAVGWSSDVLPAVKRMSNVAVV-VPK-SG----ASLWADLWAIPAASRLETKQIGGRV 258 (380)
Q Consensus 188 --v~-~~~~~~~~~~~~~Gev~~~~~~s~~~~~~~~~~~~i~~~-~P~-eG----~~~~~d~~~I~k~s~~~~~~~~~~~ 258 (380)
+. ....++..+.|.+|+++|.+.++..+..+...+.+++++ +|. +| ...+..+++|+++++|++
T Consensus 202 g~~~~~~~~~~~~~~f~~Gk~am~~~g~w~~~~~~~~~~~~~~~~~P~~~g~~~~~~~~~~~~~I~~~sk~~e------- 274 (465)
T 2zxt_A 202 KHMNADTDYSIAEAAFNKGETAMTINGPWAWSNIDTSKVNYGVTVLPTFKGQPSKPFVGVLSAGINAASPNKE------- 274 (465)
T ss_dssp TSSCTTCCHHHHHHHHHHTCCSBEEECTTTHHHHHHHTCCCCEECCCCGGGSCCCCEEEEEEEEEBTTCSCHH-------
T ss_pred CCCCCCCCcchHHHHHHCCCeeEEEeCCchHHHHhhcCCceEEEeCCCCCCCCCccccccceEEEECCCCCHH-------
Confidence 11 122345678999999999998877766666567788887 775 22 345667899999999998
Q ss_pred CCChHHHHHHH-HHHhhHHhhchhhhh
Q 016927 259 RGPSPLIHQWI-EFCLQTARALPFKQE 284 (380)
Q Consensus 259 ~~~~~~A~~fi-~fllspe~~~~~~~~ 284 (380)
+|++|| +|+++++.|..++..
T Consensus 275 -----aA~~Fi~~~l~s~e~q~~~~~~ 296 (465)
T 2zxt_A 275 -----LAKEFLENYLLTDEGLEAVNKD 296 (465)
T ss_dssp -----HHHHHHHHTTSSHHHHHHHHHH
T ss_pred -----HHHHHHHHHHcCHHHHHHHHHh
Confidence 999999 999999999998865
No 56
>3h4z_A Maltose-binding periplasmic protein fused with Al DERP7; MBP fusion, AHA1/BPI domain-like, super roll, sugar T transport, allergen; HET: GLC; 2.35A {Escherichia coli}
Probab=99.84 E-value=2e-20 Score=193.47 Aligned_cols=225 Identities=17% Similarity=0.162 Sum_probs=154.0
Q ss_pred CccEEEeCcHHHHHHHHcCcccccccCCCccccCCCChhhHHHHhhhCCCccCCCCCEEEeecccceeEEEEeccccccC
Q 016927 41 AADLVSVGDSWLSFAIKKRLIEPIAGAEDQDWFKCLSHKWKVYLRRNDAGEIDPRGKIWAAPYRWGTMVIAYKKSKFRKH 120 (380)
Q Consensus 41 ~~Dvv~~~~~~~~~~~~~gll~pld~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~Y~vP~~~~~~gi~Yn~d~~~~~ 120 (380)
.|||+.++..++..+++.|+|+||+... +...++ .+.+++. ..+ +|+.||+|+..++.+++||+|+|++
T Consensus 56 ~PDV~~~~~~~~~~~~~~G~l~pL~~~~--~~~~~~---~~~~~~~---~~~--dGk~YgvP~~~~~~~l~YNkdl~~~- 124 (568)
T 3h4z_A 56 GPDIIFWAHDRFGGYAQSGLLAEITPAA--AFQDKL---YPFTWDA---VRY--NGKLIAYPIAVEALSLIYNKDLLPN- 124 (568)
T ss_dssp SCSEEEEEHHHHHHHHHHTCBCCCCCCH--HHHTTB---CTHHHHH---TEE--TTEECSEEEEEECCEEEEETTTCSS-
T ss_pred CCeEEEECcHhHHHHHHCCCEEeCCcch--hhhhhc---CHHHHhh---eEE--CCEEEEEEeccCceEEEEEhHHhhC-
Confidence 5999999888999999999999999641 122233 2333332 234 4999999999999999999999986
Q ss_pred CCCCCCCHHHhcCc--cc--cCceeeecC--hhHHHHHHHHHcCCCCCCCCh------hhhhc-cchHHHHHHHHHHhhh
Q 016927 121 NLAPIEDWKDLWRP--EL--AGRISMVNS--PREVIGSVLKYMGASYNSNNI------DLQVA-GGKISVQQNLALLANQ 187 (380)
Q Consensus 121 g~~~p~sW~dL~~~--~~--~gki~~~~~--~~~~~~~al~~~G~~~~~~~~------~~~~~-~~~~~~~~~L~~l~~~ 187 (380)
+|+||+||++. ++ +|+..+.-. ....+...+...|..+...+. ...+. ....++.+.+.++...
T Consensus 125 ---~P~Twdel~~~a~kl~~~g~~~~~~~~~~~~~~~~~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~l~~~ 201 (568)
T 3h4z_A 125 ---PPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPLIAADGGYAFKYAAGKYDIKDVGVDNAGAKAGLTFLVDLIKN 201 (568)
T ss_dssp ---CCSBSTTHHHHHHHHHTTTCEEECCCCSSHHHHHHHHHHTTCEEEEECSSCEEEEEEESSSHHHHHHHHHHHHHHHT
T ss_pred ---CCCCHHHHHHHHHHHHhCCCceEEEecCchHHHHHHHHHcCCceeecCCCccccCccccCCHHHHHHHHHHHHHHHc
Confidence 89999999985 23 355443221 122222334555654321110 00011 1144666777666543
Q ss_pred --cc-cccchhHHHHhHcCCEEEEEechhcHHHHHHcCCCcEEE-ccCC-C----ccceeeeEEEeCCCCCcccccCCCC
Q 016927 188 --AR-LFDSTHYLKAFGIGDVWVAVGWSSDVLPAVKRMSNVAVV-VPKS-G----ASLWADLWAIPAASRLETKQIGGRV 258 (380)
Q Consensus 188 --v~-~~~~~~~~~~~~~Gev~~~~~~s~~~~~~~~~~~~i~~~-~P~e-G----~~~~~d~~~I~k~s~~~~~~~~~~~ 258 (380)
+. ....++..+.|.+|+++|.+.++..+..+.+.+.+++++ +|.. | ...+..+++|+++++|++
T Consensus 202 G~~~~~~~~~~~~~~f~~Gk~am~~~g~w~~~~~~~~~~~~~~~~~P~~~g~~~~~~~g~~~~~I~~~skn~e------- 274 (568)
T 3h4z_A 202 KHMNADTDYSIAEAAFNKGETAMTINGPWAWSNIDTSAVNYGVTVLPTFKGQPSKPFVGVLSAGINAASPNKE------- 274 (568)
T ss_dssp TSSCTTCCHHHHHHHHHTTSEEEEEECGGGHHHHHTSSCCEEEECCCEETTEECCCEEEEEEEEEBTTCSCHH-------
T ss_pred CCCCCCCChHHHHHHHHcCCeEEEEEChhHHHHHHhcCCCEEEEECCCCCCCCccceecceEEEEECCCCCHH-------
Confidence 11 123356778999999999999999888777777788876 5642 2 345678899999999998
Q ss_pred CCChHHHHHHHH-HHhhHHhhchhhhhhcCCCCCC
Q 016927 259 RGPSPLIHQWIE-FCLQTARALPFKQEVIPGASPS 292 (380)
Q Consensus 259 ~~~~~~A~~fi~-fllspe~~~~~~~~~~~~~~p~ 292 (380)
+|++||+ |++++|.|..+++. .++..|.
T Consensus 275 -----aA~~Fl~~fl~s~e~q~~~~~~-~~~~~p~ 303 (568)
T 3h4z_A 275 -----LAKEFLENYLLTDEGLEAVNKD-KPLGAVA 303 (568)
T ss_dssp -----HHHHHHHHTTSSHHHHHHHHHH-SCCSEES
T ss_pred -----HHHHHHHHHhcCHHHHHHHHHh-CCCCCCc
Confidence 9999997 99999999998864 3443443
No 57
>4aq4_A SN-glycerol-3-phosphate-binding periplasmic prote; diester-binding protein; HET: G3P; 1.80A {Escherichia coli}
Probab=99.84 E-value=6.4e-20 Score=180.56 Aligned_cols=265 Identities=14% Similarity=0.142 Sum_probs=162.2
Q ss_pred CCCceEEEEEEcccHHHHHHhcccchhHhhcCCCCCCCccEEEeCcHHHHHHHHcCcccccccCCCcccc-CCCChhhHH
Q 016927 4 QGKRLKFQMNLCASIDGIVNNLSVPFNKVKAKSAPYMAADLVSVGDSWLSFAIKKRLIEPIAGAEDQDWF-KCLSHKWKV 82 (380)
Q Consensus 4 ~~~~v~v~~~~~gs~~~~~~~~~~~~~kl~ag~~~~~~~Dvv~~~~~~~~~~~~~gll~pld~~~~~~~~-~~~~~~~~~ 82 (380)
.+++|+|+.++.+++++.+++.. +.+.+|. .|||+.+...++..+++.|+|.||+........ ...+.+.+.
T Consensus 32 ~~p~i~V~~~~~~~~~~~~~~~~---aa~~sg~----~PDv~~~~~~~~~~~~~~g~l~~l~d~~~~~~~~~~~~~~~~~ 104 (419)
T 4aq4_A 32 ENPDYKIVPTYKGNYEQNLSAGI---AAFRTGN----APAILQVYEVGTATMMASKAIKPVYDVFKEAGIQFDESQFVPT 104 (419)
T ss_dssp HCTTEEEEEEECSSHHHHHHHHH---HHHHTTC----CCSEEEEEGGGHHHHHTCTTEECHHHHHHHHTCCCCGGGBCHH
T ss_pred HCcCeEEEEEeCCCHHHHHHHHH---HHHhcCC----CCeEEEECchhHHHHHHCCCccccHHHHhhcccccchhhhhHH
Confidence 35679999999999888887742 2233343 499999999999999999999999753100000 011223332
Q ss_pred HHhhhCCCccCCCCCEEEeecccceeEEEEeccccccCCC---CCCCCHHHhcCc--cc--cCc-eeeecC-hh-HHHHH
Q 016927 83 YLRRNDAGEIDPRGKIWAAPYRWGTMVIAYKKSKFRKHNL---APIEDWKDLWRP--EL--AGR-ISMVNS-PR-EVIGS 152 (380)
Q Consensus 83 ~~~~~~~~~~d~~g~~Y~vP~~~~~~gi~Yn~d~~~~~g~---~~p~sW~dL~~~--~~--~gk-i~~~~~-~~-~~~~~ 152 (380)
.... . ....+|+.||||+..++.+|+||+|+|+++|+ ++|+||+||.+. ++ +|. ...... .. ..+..
T Consensus 105 ~~~~-~--~~~~dGk~y~vP~~~~~~~l~Ynkdlf~~aGl~~~~~p~Twde~~~~a~~~~~~g~~~~~~~~~~~~~~~~~ 181 (419)
T 4aq4_A 105 VSGY-Y--SDSKTGHLLSQPFNSSTPVLYYNKDAFKKAGLDPEQPPKTWQDLADYAAKLKASGMKCGYASGWQGWIQLEN 181 (419)
T ss_dssp HHHH-T--BCTTTCCBSSEEEEEECEEEEEEHHHHHHTTCCTTCCCSBHHHHHHHHHHHHHTTCSEEEEESSHHHHHTHH
T ss_pred HHHH-h--ccCcCCEEEeccccccceEEEEEhHHHHHcCCCCCCCCCCHHHHHHHHHHHhccccCCCcccccCcccchhh
Confidence 2211 1 12235999999999999999999999999998 458999999974 22 232 122111 11 11111
Q ss_pred HHHHcCCC-------CCCCChhhhhc-cchHHHHHHHHHHhhh--cc-cccchhHHHHhHcCCEEEEEechhcHHHHHHc
Q 016927 153 VLKYMGAS-------YNSNNIDLQVA-GGKISVQQNLALLANQ--AR-LFDSTHYLKAFGIGDVWVAVGWSSDVLPAVKR 221 (380)
Q Consensus 153 al~~~G~~-------~~~~~~~~~~~-~~~~~~~~~L~~l~~~--v~-~~~~~~~~~~~~~Gev~~~~~~s~~~~~~~~~ 221 (380)
.....|.. .+..+....+. ....++.+.+.++... +. ....++..+.|.+|+++|.+.++..+....+.
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~l~~~g~~~~~~~~~~~~~~f~~G~~am~~~g~~~~~~~~~~ 261 (419)
T 4aq4_A 182 FSAWNGLPFASKNNGFDGTDAVLEFNKPEQVKHIAMLEEMNKKGDFSYVGRKDESTEKFYNGDCAMTTASSGSLANIREY 261 (419)
T ss_dssp HHHHTTCCSBHHHHTTTCTTCCBCCCSHHHHHHHHHHHHHHHHTSBCCCCSSSHHHHHHHTTSEEEEEEEGGGHHHHHHH
T ss_pred hhhhccccccccccccccCCCeeeeccHHHHHHHHHHHHHHhcCCCCcccchhhHHHhhhcCceEEEEeChHHHHHHHhh
Confidence 11222211 11111111111 0134556666666432 11 11234667899999999999988877655543
Q ss_pred -CCCcEEE-ccC--C------CccceeeeEEEeCC--CCCcccccCCCCCCChHHHHHHHHHHhhHHhhchhhhhhcCCC
Q 016927 222 -MSNVAVV-VPK--S------GASLWADLWAIPAA--SRLETKQIGGRVRGPSPLIHQWIEFCLQTARALPFKQEVIPGA 289 (380)
Q Consensus 222 -~~~i~~~-~P~--e------G~~~~~d~~~I~k~--s~~~~~~~~~~~~~~~~~A~~fi~fllspe~~~~~~~~~~~~~ 289 (380)
+.++++. +|. . +......+++|+++ ++|++ +|++||+|++++|.|..+++. .++
T Consensus 262 ~~~~~~~~~~P~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~------------aA~~fl~~l~s~e~~~~~~~~-~g~- 327 (419)
T 4aq4_A 262 AKFNYGVGMMPYDADAKDAPQNAIIGGASLWVMQGKDKETYT------------GVAKFLDFLAKPENAAEWHQK-TGY- 327 (419)
T ss_dssp CCSCEEEEECCBCTTCTTCCCCCCCEEEEEEEESSCCHHHHH------------HHHHHHHHHTSHHHHHHHHHH-HCC-
T ss_pred CCCceEEEeccCCCCCCCCCcceeecCceEEEEecchhhhHH------------HHHHHHHHhCCHHHHHHHHHh-cCC-
Confidence 4466653 452 1 12334456777754 45766 999999999999999999875 344
Q ss_pred CCC
Q 016927 290 SPS 292 (380)
Q Consensus 290 ~p~ 292 (380)
.|.
T Consensus 328 ~P~ 330 (419)
T 4aq4_A 328 LPI 330 (419)
T ss_dssp BCC
T ss_pred CCC
Confidence 443
No 58
>1r6z_P Chimera of maltose-binding periplasmic protein AN argonaute 2; deviant OB fold, RNAI, gene regulation; HET: MAL; 2.80A {Escherichia coli} SCOP: b.34.14.1 c.94.1.1
Probab=99.84 E-value=3.2e-20 Score=189.29 Aligned_cols=218 Identities=16% Similarity=0.170 Sum_probs=152.0
Q ss_pred CccEEEeCcHHHHHHHHcCcccccccCCCccccCCCChhhHHHHhhhCCCccCCCCCEEEeecccceeEEEEeccccccC
Q 016927 41 AADLVSVGDSWLSFAIKKRLIEPIAGAEDQDWFKCLSHKWKVYLRRNDAGEIDPRGKIWAAPYRWGTMVIAYKKSKFRKH 120 (380)
Q Consensus 41 ~~Dvv~~~~~~~~~~~~~gll~pld~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~Y~vP~~~~~~gi~Yn~d~~~~~ 120 (380)
.|||+.++..++..+++.|+|+||+... .. .+++.+..++. ..+ +|+.||+|+..++.+++||+|+|++
T Consensus 57 ~PDv~~~~~~~~~~~~~~G~l~~L~~~~--~~---~~~~~~~~~~~---~~~--dGk~YgvP~~~~~~~l~YNkdl~~~- 125 (509)
T 1r6z_P 57 GPDIIFWAHDRFGGYAQSGLLAEITPDK--AF---QDKLYPFTWDA---VRY--NGKLIAYPIAVEALSLIYNKDLLPN- 125 (509)
T ss_dssp SCSEEEEEGGGHHHHHHTTCBCCCCCCH--HH---HTTBCHHHHHH---TEE--TTEECSEEEEEECCEEEEETTTCSS-
T ss_pred CCcEEEECcHhHHHHHHCCceecCCcch--hh---hhhCCHHHHhh---eEE--CCEEEEeccccCceEEEEEhHhhcC-
Confidence 5999999888999999999999998641 11 23333444432 234 4999999999999999999999997
Q ss_pred CCCCCCCHHHhcC--cccc--CceeeecCh--hHHHHHHHHHcCCCCCC-----CCh-hhhhc-cchHHHHHHHHHHhhh
Q 016927 121 NLAPIEDWKDLWR--PELA--GRISMVNSP--REVIGSVLKYMGASYNS-----NNI-DLQVA-GGKISVQQNLALLANQ 187 (380)
Q Consensus 121 g~~~p~sW~dL~~--~~~~--gki~~~~~~--~~~~~~al~~~G~~~~~-----~~~-~~~~~-~~~~~~~~~L~~l~~~ 187 (380)
+|+||+||++ .+++ |++++.... ...+...+...|+.+.+ .+. ...+. ....++.+.+.++...
T Consensus 126 ---~P~Twdel~~~a~~l~~~g~~g~~~~~~~~~~~~~~~~~~Gg~~~~~~~g~~~~~~~~~~~~~~~~al~~~~~l~~~ 202 (509)
T 1r6z_P 126 ---PPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPLIAADGGYAFKYENGKYDIKDVGVDNAGAKAGLTFLVDLIKN 202 (509)
T ss_dssp ---CCSBGGGHHHHHHHHHHTTCEEECCCCSSHHHHHHHHHHTTCEEEEEETTEEEEEEEESSSHHHHHHHHHHHHHHHT
T ss_pred ---CCCCHHHHHHHHHHHHhCCcceeEecCCCcHHHHHHHHhcCCeecccccccccccccccCCHHHHHHHHHHHHHHHc
Confidence 8999999998 3454 666554322 12223334556654321 010 00111 1144667777766532
Q ss_pred --cc-cccchhHHHHhHcCCEEEEEechhcHHHHHHcCCCcEEE-ccC-CC----ccceeeeEEEeCCCCCcccccCCCC
Q 016927 188 --AR-LFDSTHYLKAFGIGDVWVAVGWSSDVLPAVKRMSNVAVV-VPK-SG----ASLWADLWAIPAASRLETKQIGGRV 258 (380)
Q Consensus 188 --v~-~~~~~~~~~~~~~Gev~~~~~~s~~~~~~~~~~~~i~~~-~P~-eG----~~~~~d~~~I~k~s~~~~~~~~~~~ 258 (380)
+. ....++..+.|.+|+++|.+.++..+..+.+.+.+++++ +|. +| ...+..+++|+++++|++
T Consensus 203 g~~~~~~~~~~~~~~f~~Gk~am~~~g~w~~~~~~~~~~~~~~~~~P~~~g~~~~~~~~~~~~~I~~~sk~~e------- 275 (509)
T 1r6z_P 203 KHMNADTDYSIAEAAFNKGETAMTINGPWAWSNIDTSKVNYGVTVLPTFKGQPSKPFVGVLSAGINAASPNKE------- 275 (509)
T ss_dssp TSSCTTCCHHHHHHHHHTTCEEEEEECGGGHHHHHHTTCCEEEECCCBBTTBCCCCEEEEEEEEEBTTCTTHH-------
T ss_pred CCCCCCCChhHHHHHHHcCCeeEEEcCcchHHHHHhcCCceEEEeCCCCCCCCCcceecccEEEEECCCCCHH-------
Confidence 11 122345678999999999998887776666667788887 675 33 235667899999999998
Q ss_pred CCChHHHHHHH-HHHhhHHhhchhhhh
Q 016927 259 RGPSPLIHQWI-EFCLQTARALPFKQE 284 (380)
Q Consensus 259 ~~~~~~A~~fi-~fllspe~~~~~~~~ 284 (380)
+|++|| +|++++|.|..+++.
T Consensus 276 -----aA~~fl~~~l~s~e~q~~~~~~ 297 (509)
T 1r6z_P 276 -----LAKEFLENYLLTDEGLEAVNKD 297 (509)
T ss_dssp -----HHHHHHHHTTTSHHHHHHHHHH
T ss_pred -----HHHHHHHHHhcCHHHHHHHHHh
Confidence 999999 999999999998865
No 59
>4exk_A Maltose-binding periplasmic protein, uncharacteri protein chimera; MCSG, pcsep, MBP-fused target, structural genomics; HET: MTT; 1.28A {Escherichia coli} PDB: 3g7v_A* 3g7w_A* 3sev_A* 3ser_A* 3sew_A* 3set_A* 3ses_A* 3seu_A* 3sex_A* 3sey_A* 3q27_A* 3q28_A* 3q26_A* 3q25_A* 3q29_A* 1nmu_A* 2ok2_A* 3pgf_A* 1t0k_A* 3rum_A* ...
Probab=99.83 E-value=9.7e-20 Score=184.98 Aligned_cols=218 Identities=17% Similarity=0.164 Sum_probs=148.8
Q ss_pred CccEEEeCcHHHHHHHHcCcccccccCCCccccCCCChhhHHHHhhhCCCccCCCCCEEEeecccceeEEEEeccccccC
Q 016927 41 AADLVSVGDSWLSFAIKKRLIEPIAGAEDQDWFKCLSHKWKVYLRRNDAGEIDPRGKIWAAPYRWGTMVIAYKKSKFRKH 120 (380)
Q Consensus 41 ~~Dvv~~~~~~~~~~~~~gll~pld~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~Y~vP~~~~~~gi~Yn~d~~~~~ 120 (380)
.|||+.++..++..+++.|+|.||+... .. .+++.+..++. ..+ +|+.||+|+..++.+|+||+|+|++
T Consensus 60 ~PDV~~~~~~~~~~~~~~G~L~~L~d~~--~~---~d~~~~~~~~~---~~~--dGk~YgvP~~~~~~~l~YNkdlf~e- 128 (487)
T 4exk_A 60 GPDIIFWAHDRFGGYAQSGLLAEITPAA--AF---QDKLYPFTWDA---VRY--NGKLIAYPIAVEALSLIYNKDLLPN- 128 (487)
T ss_dssp SCSEEEEEGGGHHHHHHTTCBCCCCCCH--HH---HTTBCHHHHHH---TEE--TTEECSEEEEEECCEEEEETTTCSS-
T ss_pred CCeEEEECcHHHHHHHHCCCcccCCcch--hh---hhhcCHHHHHh---ceE--CCEEEecCeEeccEEEEEEeecccc-
Confidence 6999999999999999999999998642 11 22344444432 235 4999999999999999999999997
Q ss_pred CCCCCCCHHHhcCc--cc--cCceeee--cChhHHHHHHHHHcCCCCCC-CC----h-hhhhc-cchHHHHHHHHHHhhh
Q 016927 121 NLAPIEDWKDLWRP--EL--AGRISMV--NSPREVIGSVLKYMGASYNS-NN----I-DLQVA-GGKISVQQNLALLANQ 187 (380)
Q Consensus 121 g~~~p~sW~dL~~~--~~--~gki~~~--~~~~~~~~~al~~~G~~~~~-~~----~-~~~~~-~~~~~~~~~L~~l~~~ 187 (380)
+|+||++|.+. ++ +|+..+. ......+...+...|+.... .+ . +..+. ....++.+++.++...
T Consensus 129 ---~P~Twdel~~~akklk~~g~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~g~~d~~~~~~~~~~~~~al~~l~~l~~~ 205 (487)
T 4exk_A 129 ---PPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPLIAADGGYAFKYAAGKYDIKDVGVDNAGAKAGLTFLVDLIKN 205 (487)
T ss_dssp ---CCSBSTTHHHHHHHHHTTTCEEECCCTTSHHHHHHHHHHTTCEEEEEETTEEEEEEEETTSHHHHHHHHHHHHHHHT
T ss_pred ---CCchHHHHHHHHHHHHhcCCCccccCCCcccchhHHHHhhccceeeccCCCccccccccCCHHHHHHHHHHHHHHHc
Confidence 89999999874 23 3433222 22222222334455543211 00 0 00000 0134556666666432
Q ss_pred cc---cccchhHHHHhHcCCEEEEEechhcHHHHHHcCCCcEEE-ccC-C----CccceeeeEEEeCCCCCcccccCCCC
Q 016927 188 AR---LFDSTHYLKAFGIGDVWVAVGWSSDVLPAVKRMSNVAVV-VPK-S----GASLWADLWAIPAASRLETKQIGGRV 258 (380)
Q Consensus 188 v~---~~~~~~~~~~~~~Gev~~~~~~s~~~~~~~~~~~~i~~~-~P~-e----G~~~~~d~~~I~k~s~~~~~~~~~~~ 258 (380)
-. ..+.....+.|.+|+++|.+.++..+..+.+.+.+++++ +|. + ++..+..+++|+++++|++
T Consensus 206 g~~~~~~~~~~~~~~F~~Gk~Am~~~g~w~~~~~~~~~~~~gv~plP~~~g~~~~~~~g~~~~~I~~~Skn~e------- 278 (487)
T 4exk_A 206 KHMNADTDYSIAEAAFNKGETAMTINGPWAWSNIDTSAVNYGVTVLPTFKGQPSKPFVGVLSAGINAASPNKE------- 278 (487)
T ss_dssp TSSCTTCCHHHHHHHHHTTCEEEEEECGGGHHHHHHSSCCEEEECCCBBTTBCCCCEEEEEEEEEBTTCTTHH-------
T ss_pred CCCCcccchhhHHHhhhcCCEEEEEeCHHHHHHHHhcCCCeeEEEeccCCCCCCcceecceEEEEECCCCCHH-------
Confidence 11 112345668999999999999998888888888888875 442 1 2446678899999999998
Q ss_pred CCChHHHHHHHH-HHhhHHhhchhhhh
Q 016927 259 RGPSPLIHQWIE-FCLQTARALPFKQE 284 (380)
Q Consensus 259 ~~~~~~A~~fi~-fllspe~~~~~~~~ 284 (380)
+|++||+ |+++++.|..+...
T Consensus 279 -----aA~~Fl~~~l~s~e~q~~~~~~ 300 (487)
T 4exk_A 279 -----LAKEFLENYLLTDEGLEAVNKD 300 (487)
T ss_dssp -----HHHHHHHHTTSSHHHHHHHHHH
T ss_pred -----HHHHHHHHHhCCHHHHHHHHHc
Confidence 9999996 78899999998875
No 60
>4h1g_A Maltose binding protein-cakar3 motor domain fusio; kinesin motor domain, motor protein, chimera; HET: MTT ADP EDO; 2.15A {Escherichia coli}
Probab=99.83 E-value=1.2e-19 Score=192.37 Aligned_cols=218 Identities=16% Similarity=0.152 Sum_probs=149.6
Q ss_pred CccEEEeCcHHHHHHHHcCcccccccCCCccccCCCChhhHHHHhhhCCCccCCCCCEEEeecccceeEEEEeccccccC
Q 016927 41 AADLVSVGDSWLSFAIKKRLIEPIAGAEDQDWFKCLSHKWKVYLRRNDAGEIDPRGKIWAAPYRWGTMVIAYKKSKFRKH 120 (380)
Q Consensus 41 ~~Dvv~~~~~~~~~~~~~gll~pld~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~Y~vP~~~~~~gi~Yn~d~~~~~ 120 (380)
.|||+.++..++..+++.|+|+||+.+. .. .+++.+..++. ..+| |+.||+|+.+++.+|+||+|+|++
T Consensus 57 ~PDV~~~~~~~~~~~a~~G~L~~L~~~~--~~---~d~~~~~~~~~---~~~d--Gk~YgvP~~~~~~~l~YNkdlf~e- 125 (715)
T 4h1g_A 57 GPDIIFWAHDRFGGYAQSGLLAEITPDK--AF---QDKLYPFTWDA---VRYN--GKLIAYPIAVEALSLIYNKDLLPN- 125 (715)
T ss_dssp SCSEEEEEGGGHHHHHHTTCBCCCCCCH--HH---HTTBCHHHHHH---TEET--TEECSEEEEEECCEEEEETTTCSS-
T ss_pred CCeEEEEChHHHHHHHHCCCEeeCCcCh--hh---hhhcCHHHHHh---cEEC--CEEEEEEEecceEEEEEEhHHhcC-
Confidence 5999999999999999999999998641 11 23344444432 2454 999999999999999999999997
Q ss_pred CCCCCCCHHHhcCc--cc--cCceeeec--ChhHHHHHHHHHcCCCCC-CCChh-----hhhc-cchHHHHHHHHHHhhh
Q 016927 121 NLAPIEDWKDLWRP--EL--AGRISMVN--SPREVIGSVLKYMGASYN-SNNID-----LQVA-GGKISVQQNLALLANQ 187 (380)
Q Consensus 121 g~~~p~sW~dL~~~--~~--~gki~~~~--~~~~~~~~al~~~G~~~~-~~~~~-----~~~~-~~~~~~~~~L~~l~~~ 187 (380)
+|+||+||.+. ++ +|+..+.. .........+...|+... ..+.. ..+. ....++.+++.++...
T Consensus 126 ---~P~TWdEl~~~akklk~~g~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~g~~~~~~~~~~s~~~~~al~~l~~l~~~ 202 (715)
T 4h1g_A 126 ---PPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPLIAADGGYAFKYENGKYDIKDVGVDNAGAKAGLTFLVDLIKN 202 (715)
T ss_dssp ---CCSBGGGHHHHHHHHHTTTCEEECCCCSSHHHHHHHHHHTTCEEEEECSSSEEEEEEESSSHHHHHHHHHHHHHHHT
T ss_pred ---CCCCHHHHHHHHHHHHhcCCCceeccCCchHHHHHHHHhhCCceecccCCcccccccccCCHHHHHHHHHHHHHHHc
Confidence 89999999874 23 35443322 122222233345554321 11110 0010 1134556666666432
Q ss_pred --cccc-cchhHHHHhHcCCEEEEEechhcHHHHHHcCCCcEEE-ccC-----CCccceeeeEEEeCCCCCcccccCCCC
Q 016927 188 --ARLF-DSTHYLKAFGIGDVWVAVGWSSDVLPAVKRMSNVAVV-VPK-----SGASLWADLWAIPAASRLETKQIGGRV 258 (380)
Q Consensus 188 --v~~~-~~~~~~~~~~~Gev~~~~~~s~~~~~~~~~~~~i~~~-~P~-----eG~~~~~d~~~I~k~s~~~~~~~~~~~ 258 (380)
+... +.+...+.|.+|+++|.+.|+..+..+.+.+.+++++ +|. .+...+..+++|+++++|++
T Consensus 203 g~~~~~~~~~~~~~~F~~Gk~Am~~~g~w~~~~~~~~~~~~gva~lP~~~g~~~~~~~g~~~~~I~~~Skn~e------- 275 (715)
T 4h1g_A 203 KHMNADTDYSIAEAAFNKGETAMTINGPWAWSNIDTSKVNYGVTVLPTFKGQPSKPFVGVLSAGINAASPNKE------- 275 (715)
T ss_dssp TSSCTTCCHHHHHHHHHTTCEEEEEECGGGHHHHHHSSCCEEEECCCEETTEECCCEEEEEEEEEBTTCSCHH-------
T ss_pred CCCCcchhhhhHHHHhhcCceEEEEecHHHHHHHHhcCCCeEEEEcCCCCCCCCcceeeeEEEEEECCCCcHH-------
Confidence 1111 2345668899999999999988887787778888875 563 23456778899999999998
Q ss_pred CCChHHHHHHHH-HHhhHHhhchhhhh
Q 016927 259 RGPSPLIHQWIE-FCLQTARALPFKQE 284 (380)
Q Consensus 259 ~~~~~~A~~fi~-fllspe~~~~~~~~ 284 (380)
+|++||+ |+++++.|..+...
T Consensus 276 -----aA~~Fl~~~l~s~e~q~~~~~~ 297 (715)
T 4h1g_A 276 -----LAKEFLENYLLTDEGLEAVNKD 297 (715)
T ss_dssp -----HHHHHHHHTTSSHHHHHHHHHH
T ss_pred -----HHHHHHHHHhCCHHHHHHHHHc
Confidence 9999996 78899999988865
No 61
>3thi_A Protein (thiaminase I); thiamin degradation, transferase; 2.00A {Bacillus subtilis} SCOP: c.94.1.1 PDB: 2thi_A 4thi_A
Probab=99.83 E-value=1.4e-19 Score=176.03 Aligned_cols=220 Identities=11% Similarity=0.162 Sum_probs=145.3
Q ss_pred CCccEEEeCcHHHHHHHHcCcccccccCCCccccCCCChhhHHHHhhhCCCccCCCCCEEEeecccceeEEEEecccccc
Q 016927 40 MAADLVSVGDSWLSFAIKKRLIEPIAGAEDQDWFKCLSHKWKVYLRRNDAGEIDPRGKIWAAPYRWGTMVIAYKKSKFRK 119 (380)
Q Consensus 40 ~~~Dvv~~~~~~~~~~~~~gll~pld~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~Y~vP~~~~~~gi~Yn~d~~~~ 119 (380)
..|||+.++..++..+++.|+|+||+.. .+++.+++.+..++. ..++ |+.||+|+..++.+|+||+|++..
T Consensus 48 ~~pDv~~~~~~~~~~~~~~g~l~~L~~~----~~~~~~~~~~~~~~~---~~~~--G~~ygvP~~~~~~~l~YNkd~~g~ 118 (371)
T 3thi_A 48 DDLDVFVLDSIFLSHFVDAGYLLPFGSQ----DIDQAEDVLPFALQG---AKRN--GEVYGLPQILCTNLLFYRKGDLKI 118 (371)
T ss_dssp TTCCEEEEEGGGHHHHHHTTCEECBCGG----GCTTGGGBCHHHHHH---TEET--TEECCEEEEEECEEEEEETTCHHH
T ss_pred CCCCEEEECchhHHHHHhCCCcccCchh----hccCccccChHHHhh---eEEC--CEEEEecccCceeEEEEeCccccC
Confidence 4799999998999999999999999964 234556666665543 2454 999999999999999999998753
Q ss_pred CCCCCCCCHHHhcCc--cccCc-------eeee---cChh---HHHHHHHHHcCCCCCCCCh--hhhhc-cchHHHHHHH
Q 016927 120 HNLAPIEDWKDLWRP--ELAGR-------ISMV---NSPR---EVIGSVLKYMGASYNSNNI--DLQVA-GGKISVQQNL 181 (380)
Q Consensus 120 ~g~~~p~sW~dL~~~--~~~gk-------i~~~---~~~~---~~~~~al~~~G~~~~~~~~--~~~~~-~~~~~~~~~L 181 (380)
++|+||+||++. +++.+ .++. .... ..+...+...|+.+...+. ...+. ....++.+.+
T Consensus 119 ---~~P~Twdel~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~al~~~ 195 (371)
T 3thi_A 119 ---GQVDNIYELYKKIGTSHSEQIPPPQNKGLLINMAGGTTKASMYLEALIDVTGQYTEYDLLPPLDPLNDKVIRGLRLL 195 (371)
T ss_dssp ---HTCCBHHHHHHHHCCCCCCCSSCCEEEEEEECCCSHHHHHHHHHHHHHHHHTCCCCCSSCCCSSSCCHHHHHHHHHH
T ss_pred ---CCCCcHHHHHHHHHhhcccCCCCCCcCceeeecCCCcchHHHHHHHHHhcCCcccccccccccccCCHHHHHHHHHH
Confidence 489999999974 33311 1221 1111 1122223344444221110 00000 0133455555
Q ss_pred HHHhh-hcccc--cc---hhHHHHhHcCCEEEEEechhcHHHHHHcCCCcEEE-ccC----CCccceeeeEEEeCCCCCc
Q 016927 182 ALLAN-QARLF--DS---THYLKAFGIGDVWVAVGWSSDVLPAVKRMSNVAVV-VPK----SGASLWADLWAIPAASRLE 250 (380)
Q Consensus 182 ~~l~~-~v~~~--~~---~~~~~~~~~Gev~~~~~~s~~~~~~~~~~~~i~~~-~P~----eG~~~~~d~~~I~k~s~~~ 250 (380)
.++.. ....+ .. ....+.|.+|+++|.+.|+.....+.+...+++++ +|. +++..+.++++|+++++|+
T Consensus 196 ~~l~~~~~~~~~~~~~~~~~~~~~f~~G~~am~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~I~~~s~~~ 275 (371)
T 3thi_A 196 INMAGEKPSQYVPEDGDAYVRASWFAQGSGRAFIGYSESMMRMGDYAEQVRFKPISSSAGQDIPLFYSDVVSVNSKTAHP 275 (371)
T ss_dssp HHHHCHHHHHCCCTTCCTTHHHHHHHHTBEEEEEEETTHHHHHGGGGGTEEEECCBSCSSCCCCEEEEEEEEEETTCSCH
T ss_pred HHHhccccCcccccCCchhHHHHHHhCCeeeEEecchhhhhHhhhcccceEEEeCCCCCCCCCceeeeeEEEEcCCCCCH
Confidence 55532 11234 21 22668899999999999988776555444577775 553 2466778899999999999
Q ss_pred ccccCCCCCCChHHHHHHHHHHhhHHhhchhhh
Q 016927 251 TKQIGGRVRGPSPLIHQWIEFCLQTARALPFKQ 283 (380)
Q Consensus 251 ~~~~~~~~~~~~~~A~~fi~fllspe~~~~~~~ 283 (380)
+ +|++||+||+++|.|..+..
T Consensus 276 e------------~A~~fl~~l~s~e~~~~~~~ 296 (371)
T 3thi_A 276 E------------LAKKLANVMASADTVEQALR 296 (371)
T ss_dssp H------------HHHHHHHHHHSHHHHHHHHS
T ss_pred H------------HHHHHHHHHcCcHHHHHhhC
Confidence 8 99999999999999555443
No 62
>4b3n_A Maltose-binding periplasmic protein, tripartite motif-containing protein 5; sugar binding protein-ligase complex; HET: MAL MES; 3.30A {Escherichia coli} PDB: 2lm3_A
Probab=99.83 E-value=3.9e-20 Score=192.60 Aligned_cols=218 Identities=16% Similarity=0.141 Sum_probs=148.4
Q ss_pred CccEEEeCcHHHHHHHHcCcccccccCCCccccCCCChhhHHHHhhhCCCccCCCCCEEEeecccceeEEEEeccccccC
Q 016927 41 AADLVSVGDSWLSFAIKKRLIEPIAGAEDQDWFKCLSHKWKVYLRRNDAGEIDPRGKIWAAPYRWGTMVIAYKKSKFRKH 120 (380)
Q Consensus 41 ~~Dvv~~~~~~~~~~~~~gll~pld~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~Y~vP~~~~~~gi~Yn~d~~~~~ 120 (380)
.|||+.++..++..+++.|+|+||+.+. . ..+++.+..++. ..+ +|+.||+|+..++.+|+||+|+|++
T Consensus 70 ~PDV~~~~~~~~~~~~~~G~L~~L~~~~--~---~~d~~~~~~~~~---~~~--dGk~YgvP~~~~~~~l~YNkdlf~e- 138 (602)
T 4b3n_A 70 GPDIIFWAHDRFGGYAQSGLLAEITPDK--A---FQDKLYPFTWDA---VRY--NGKLIAYPIAVEALSLIYNKDLLPN- 138 (602)
T ss_dssp SCSEEEEEGGGHHHHHHHTCBCCCCCCH--H---HHHHBCHHHHHH---TEE--TTEECEEEEEEECCEEEEETTTCSS-
T ss_pred CCeEEEEChHHHHHHHHCCCeeeCCcch--h---hhhhcCHHHHhh---cEE--CCEEEEEEEecceEEEEEEhHHhcC-
Confidence 4999999999999999999999998641 1 123344444442 235 4999999999999999999999987
Q ss_pred CCCCCCCHHHhcCc--c--ccCceeee--cChhHHHHHHHHHcCCCC-CCCChh-----hhhc-cchHHHHHHHHHHhhh
Q 016927 121 NLAPIEDWKDLWRP--E--LAGRISMV--NSPREVIGSVLKYMGASY-NSNNID-----LQVA-GGKISVQQNLALLANQ 187 (380)
Q Consensus 121 g~~~p~sW~dL~~~--~--~~gki~~~--~~~~~~~~~al~~~G~~~-~~~~~~-----~~~~-~~~~~~~~~L~~l~~~ 187 (380)
+|+||+||.+. + .+|+..+. ..........+...|+.. ...+.. ..+. ....++.+++.++...
T Consensus 139 ---~P~TwdEl~~~akklk~~g~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~g~~~~~~~~~~~~~~~~al~~l~~l~~~ 215 (602)
T 4b3n_A 139 ---PPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPLIAADGGYAFKYENGKYDIKDVGVDNAGAKAGLTFLVDLIKN 215 (602)
T ss_dssp ---CCSBTTHHHHHHHHHHTTTCEEECCCSSSHHHHHHHHHHTTCEEEEEETTEEEEEEEESSSHHHHHHHHHHHHHHHT
T ss_pred ---CCCCHHHHHHHHHHHhhcCCcccccCCcchhhHHHHHHhcCCceeeccCCcccccccccCCHHHHHHHHHHHHHHHc
Confidence 89999999874 2 23443332 111222222334555432 111110 0010 0134555666665432
Q ss_pred --cccc-cchhHHHHhHcCCEEEEEechhcHHHHHHcCCCcEEE-ccC-----CCccceeeeEEEeCCCCCcccccCCCC
Q 016927 188 --ARLF-DSTHYLKAFGIGDVWVAVGWSSDVLPAVKRMSNVAVV-VPK-----SGASLWADLWAIPAASRLETKQIGGRV 258 (380)
Q Consensus 188 --v~~~-~~~~~~~~~~~Gev~~~~~~s~~~~~~~~~~~~i~~~-~P~-----eG~~~~~d~~~I~k~s~~~~~~~~~~~ 258 (380)
+... +.+...+.|.+|+++|.+.++..+..+.+.+.+++++ +|. .++..+..+++|+++++|++
T Consensus 216 g~~~~~~~~~~~~~~f~~Gk~Am~~~g~w~~~~~~~~~~~~gv~~lP~~~g~~~~~~~g~~~~~I~~~Skn~e------- 288 (602)
T 4b3n_A 216 KHMNADTDYSIAEAAFNKGETAMTINGPWAWSNIDTSKVNYGVTVLPTFKGQPSKPFVGVLSAGIDAASPNKE------- 288 (602)
T ss_dssp TSSCTTCCHHHHHHHHHTTCEEEEEECGGGHHHHHHHTCCEEEECCCEETTEECCCEEEEEEEEEBTTCTTHH-------
T ss_pred CCCCcccchhhHHHHhhcCceEEEEecHHHHHHHHhcCCCeEEEEcCCCCCCCCcceEeeEEEEEECCCCCHH-------
Confidence 1111 2345667899999999999988887777778888875 563 23456778899999999998
Q ss_pred CCChHHHHHHHH-HHhhHHhhchhhhh
Q 016927 259 RGPSPLIHQWIE-FCLQTARALPFKQE 284 (380)
Q Consensus 259 ~~~~~~A~~fi~-fllspe~~~~~~~~ 284 (380)
+|++||+ |+++++.|..+...
T Consensus 289 -----aA~~Fl~~~l~s~e~~~~~~~~ 310 (602)
T 4b3n_A 289 -----LAKEFLENYLLTDEGLEAVNKD 310 (602)
T ss_dssp -----HHHHHHHHTTSSHHHHHHHHHH
T ss_pred -----HHHHHHHHHhcCHHHHHHHHHc
Confidence 9999996 78899999988865
No 63
>2z8f_A Galacto-N-biose/lacto-N-biose I transporter subst binding protein; ABC transporter, mucin core-1, human MILK oligosacchalide; HET: BGC GAL NAG MES; 1.65A {Bifidobacterium longum} PDB: 2z8e_A* 2z8d_A*
Probab=99.83 E-value=8.6e-20 Score=180.55 Aligned_cols=247 Identities=14% Similarity=0.133 Sum_probs=161.4
Q ss_pred CCceEEEEEEcccH-HHHHHhcccchhHhhcCCCCCCCccEEEeCcHHHHHHHHcCcccccccCCCccccCCCChhhHHH
Q 016927 5 GKRLKFQMNLCASI-DGIVNNLSVPFNKVKAKSAPYMAADLVSVGDSWLSFAIKKRLIEPIAGAEDQDWFKCLSHKWKVY 83 (380)
Q Consensus 5 ~~~v~v~~~~~gs~-~~~~~~~~~~~~kl~ag~~~~~~~Dvv~~~~~~~~~~~~~gll~pld~~~~~~~~~~~~~~~~~~ 83 (380)
+.+|+|+++..+.. ++..+++. +.+.+|. .|||+.+...++..+++.|+|.||+.. .+. ..+++.+..
T Consensus 44 ~p~i~V~~~~~~~~~~~~~~kl~---~~~~sg~----~pDv~~~~~~~~~~~~~~g~l~~L~~~--~~~--~~~~~~~~~ 112 (412)
T 2z8f_A 44 HPDIQVKATKFDGKASDMIKKLE---TDVKSGE----APDLAQVGYAELPEVFTKGLLQDVTQY--AEQ--YKNDFASGP 112 (412)
T ss_dssp CTTEEEEEEECSSCGGGHHHHHH---HHHHHTC----CCSEEEEEGGGHHHHHHTTCBCCCHHH--HHH--HGGGBCHHH
T ss_pred CCCceEEEEecCCchhhHHHHHH---HHHhcCC----CCcEEEeCchhHHHHHHCCCeecchHH--HHH--HHHhccHHH
Confidence 34678877776644 25555532 2234443 499999998899999999999999863 111 123344444
Q ss_pred HhhhCCCccCCCCCEEEeecccceeEEEEeccccccCCCC-CCCCHHHhcCc--ccc--Cceeee-cCh--hHHHHHHHH
Q 016927 84 LRRNDAGEIDPRGKIWAAPYRWGTMVIAYKKSKFRKHNLA-PIEDWKDLWRP--ELA--GRISMV-NSP--REVIGSVLK 155 (380)
Q Consensus 84 ~~~~~~~~~d~~g~~Y~vP~~~~~~gi~Yn~d~~~~~g~~-~p~sW~dL~~~--~~~--gki~~~-~~~--~~~~~~al~ 155 (380)
++. ..+ +|+.||+|+..++.+|+||+|+|+++|++ +|+||+||.+. +++ |...+. ... ...+...+.
T Consensus 113 ~~~---~~~--~G~~y~vP~~~~~~~l~Ynkdl~~~aGl~~~P~Twdel~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~ 187 (412)
T 2z8f_A 113 YSL---VQV--GGKAYGLPQDTGPLVYFYNKAEFEKLGITEIPQTADEFIAAAKTAAAAGKYIMSYQPDEAGNMISGLAG 187 (412)
T ss_dssp HHT---TEE--TTEECEEECBCCBEEEEEEHHHHHHTTCCSCCCBHHHHHHHHHHHHHTTCBSCBCCGGGTTTHHHHHHH
T ss_pred Hhh---hcc--CCeEEEeeccCCceEEEEeHHHHHHcCCCCCCCCHHHHHHHHHHHHhcCCceeecCCcccchHHHHHHH
Confidence 432 234 49999999999999999999999999998 99999999985 333 432221 111 123333445
Q ss_pred HcCCCCCCCCh---hhhhc-cchHHHHHHHHHHhhh--cccc--cchhHHHHhHcCCEEEEEechhcHHHHHHc-----C
Q 016927 156 YMGASYNSNNI---DLQVA-GGKISVQQNLALLANQ--ARLF--DSTHYLKAFGIGDVWVAVGWSSDVLPAVKR-----M 222 (380)
Q Consensus 156 ~~G~~~~~~~~---~~~~~-~~~~~~~~~L~~l~~~--v~~~--~~~~~~~~~~~Gev~~~~~~s~~~~~~~~~-----~ 222 (380)
..|. +.+.+. ...+. ....++.+++.++... +... +.++..+.|.+|+++|.++++.....+... .
T Consensus 188 ~~G~-~~~~d~~~~~~~~~~~~~~~al~~~~~l~~~g~~~~~~~~~~~~~~~f~~G~~am~~~g~w~~~~~~~~~~~~~~ 266 (412)
T 2z8f_A 188 ASGG-WYKVKGDSWVVNTETDGSKATADFYQQLLDAKAATTNPRWDPSFDASIKDGSLIGTVAAAWEAPLFMTSSGGTGS 266 (412)
T ss_dssp TTCC-SEEEETTEEEECCCCHHHHHHHHHHHHHHHTTCSBCCCTTSHHHHHHHHTTCBCEEEEEGGGHHHHHHHHTTTTT
T ss_pred hcCc-eEecCCCeeeecCCCHHHHHHHHHHHHHHHcCCcCccccCCHHHHHHHhCCCEEEEecccchhhHHhhhCCcCcc
Confidence 5665 322111 00111 1244666777766532 2111 234567899999999999877665544432 3
Q ss_pred CCcEEE-ccC--CCc----cceeeeEEEeCCCCCcccccCCCCCCChHHHHHHHHHHhhH-Hhhch
Q 016927 223 SNVAVV-VPK--SGA----SLWADLWAIPAASRLETKQIGGRVRGPSPLIHQWIEFCLQT-ARALP 280 (380)
Q Consensus 223 ~~i~~~-~P~--eG~----~~~~d~~~I~k~s~~~~~~~~~~~~~~~~~A~~fi~fllsp-e~~~~ 280 (380)
.+++++ +|. +|. ..+..+++|+++++|++ +|++||+|++++ +.|..
T Consensus 267 ~~~~~~~~P~~~~g~~~~~~~~~~~~~i~~~s~~~e------------~A~~fl~~l~s~~e~~~~ 320 (412)
T 2z8f_A 267 GEWQVAQLGDWFGNAGKTGPDGGSAVAVLKNSKHPK------------EAMEFLDWFNTQVPDLVS 320 (412)
T ss_dssp TTEEEEECCBCSSCTTCBCBCCCEEEEEBTTCSCHH------------HHHHHHHHHTTCHHHHHH
T ss_pred cceEEEcCCCCCCCCCccccCCcceEEEeCCCCCHH------------HHHHHHHHHccCHHHHHh
Confidence 478875 775 242 34567899999999998 999999999997 77765
No 64
>2uvj_A TOGB, ABC type periplasmic sugar-binding protein; periplasmic binding protein, pectin degradation, trigalacturonic acid; HET: ADA; 1.8A {Yersinia enterocolitica} PDB: 2uvi_A* 2uvh_A* 2uvg_A 3u1o_A
Probab=99.82 E-value=1.4e-19 Score=178.54 Aligned_cols=249 Identities=13% Similarity=0.177 Sum_probs=155.6
Q ss_pred CceEEEEEEcccHHHHHHhcccchhHhhcCCCCCCCccEEEeCcHHHHHHHHcCc-ccccccCCCccccCCCChhhHHHH
Q 016927 6 KRLKFQMNLCASIDGIVNNLSVPFNKVKAKSAPYMAADLVSVGDSWLSFAIKKRL-IEPIAGAEDQDWFKCLSHKWKVYL 84 (380)
Q Consensus 6 ~~v~v~~~~~gs~~~~~~~~~~~~~kl~ag~~~~~~~Dvv~~~~~~~~~~~~~gl-l~pld~~~~~~~~~~~~~~~~~~~ 84 (380)
.+|+|+.+..+. ++..+++. +.+.+|. .|||+.+...++..+++.|+ |.||+... +. .+.+++.+..+
T Consensus 34 p~i~V~~~~~~~-~~~~~kl~---~~~~~g~----~PDv~~~~~~~~~~~~~~g~~l~~L~~~~--~~-~~~~~~~~~~~ 102 (408)
T 2uvj_A 34 PNINVKAEYTGW-DGHLSRLT---TQIAGGT----EPDVMQTNWNWLPIFSKDGTGFYNLFSVK--EQ-LDLAQFDPKEL 102 (408)
T ss_dssp TTEEEEEEEECS-TTHHHHHH---HHHHHTC----CCSEEEECGGGHHHHCTTSCSBCCGGGGT--TT-SCGGGSCHHHH
T ss_pred CCcEEEEEeCCH-HHHHHHHH---HHHhCCC----CCcEEEechHHHHHHHhCCCceecchhhc--cc-cccccCCHHHH
Confidence 456666655542 34444431 1233443 59999999999999999995 99998642 11 23445555554
Q ss_pred hhhCCCccCCCCCEEEeecccceeEEEEeccccccCCCCCCCCHHHhcCc--ccc-----CceeeecChhHH---HHHHH
Q 016927 85 RRNDAGEIDPRGKIWAAPYRWGTMVIAYKKSKFRKHNLAPIEDWKDLWRP--ELA-----GRISMVNSPREV---IGSVL 154 (380)
Q Consensus 85 ~~~~~~~~d~~g~~Y~vP~~~~~~gi~Yn~d~~~~~g~~~p~sW~dL~~~--~~~-----gki~~~~~~~~~---~~~al 154 (380)
+. ..+ +|+.||+|+..++.+|+||+|+|+++|+++|+||+||.+. +++ |.+.+....... +...+
T Consensus 103 ~~---~~~--dGk~y~vP~~~~~~~l~YNkdl~~~aGl~~P~Twdel~~~a~~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 177 (408)
T 2uvj_A 103 QQ---TTV--NGKLNGIPISVTARIFYFNDATWAKAGLEYPKTWDELLAAGKVFKEKLGDQYYPVVLEHQDTLALIRSYM 177 (408)
T ss_dssp HT---TEE--TTEECCEEEEEEEEEEEEEHHHHHHHTCCCCSSHHHHHHHHHHHHHHTCTTCBSCCCCHHHHHHHHHHHH
T ss_pred hc---cEE--CCEEEEeeccccceEEEEcHHHHHHcCCCCCCCHHHHHHHHHHHHhhcCCCeeeeeccccchHHHHHHHH
Confidence 42 234 4999999999999999999999999999999999999974 332 334443322221 11122
Q ss_pred -HHcCCCCCCCCh-hhhhc-cchHHHHHHHHHHhhh--ccc------ccch--hHHHHhHcCCEEEEEechhcHHHHHHc
Q 016927 155 -KYMGASYNSNNI-DLQVA-GGKISVQQNLALLANQ--ARL------FDST--HYLKAFGIGDVWVAVGWSSDVLPAVKR 221 (380)
Q Consensus 155 -~~~G~~~~~~~~-~~~~~-~~~~~~~~~L~~l~~~--v~~------~~~~--~~~~~~~~Gev~~~~~~s~~~~~~~~~ 221 (380)
...|.++.+.+. ...+. ....++.+++.++... +.. +... .....|.+|+++|.+.|+.....+...
T Consensus 178 ~~~~G~~~~~~~~~~~~~~~~~~~~al~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~f~~G~~a~~~~~~~~~~~~~~~ 257 (408)
T 2uvj_A 178 TQKYNIPTIDEANKKFAYSPEQWVEFFTMYKTMVDNHVMPSTKYYASFGKSNMYEMKPWINGEWAGTYMWNSTITKYSDN 257 (408)
T ss_dssp HHHHCCCSEETTTTEECSCHHHHHHHHHHHHHHHHTTSSCCHHHHHTTCSSCGGGSHHHHTTSBCEEEEEGGGTHHHHTT
T ss_pred HHhcCCCcccCCCCeeccChHHHHHHHHHHHHHHHCCCCCChHHhhhccccccccCCceeccceeEEEeecchHHHhhcc
Confidence 345766433222 11111 1234566666666432 110 0001 135689999999999988766554432
Q ss_pred ---CCCcEEE-ccC-CCc---c---ceeeeEEEeCCCCCcccccCCCCCCChHHHHHHHHHHhhHHhhchhh
Q 016927 222 ---MSNVAVV-VPK-SGA---S---LWADLWAIPAASRLETKQIGGRVRGPSPLIHQWIEFCLQTARALPFK 282 (380)
Q Consensus 222 ---~~~i~~~-~P~-eG~---~---~~~d~~~I~k~s~~~~~~~~~~~~~~~~~A~~fi~fllspe~~~~~~ 282 (380)
+.+++++ +|. +|. . ....+++|+++++|++ +|++||+|+++++.+..+.
T Consensus 258 ~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~i~~~s~~~e------------~A~~fl~~l~s~~~~~~~~ 317 (408)
T 2uvj_A 258 LTKPAKLVLGPYPMLPGAKDAGLFFKPAQMLSIGKSTKHPQ------------ESAMLINFLLNSKEGVEAL 317 (408)
T ss_dssp SCTTCCEEECCCCCCTTCSCCCCCEEEEEEEEEBTTCSCHH------------HHHHHHHHHHTSHHHHHHH
T ss_pred ccCCCceEEEeCCcCCCCCCCceeeccceEEEEECCCCCHH------------HHHHHHHHHcCCHHHHHHH
Confidence 3467775 664 221 1 1246799999999998 9999999999865554443
No 65
>4g68_A ABC transporter; transport protein; HET: XYS; 1.80A {Caldanaerobius} PDB: 4g68_B*
Probab=99.82 E-value=1.6e-19 Score=181.27 Aligned_cols=245 Identities=12% Similarity=0.099 Sum_probs=154.6
Q ss_pred CceEEEEEEcccHHHHHHhcccchhHhhcCCCCCCCccEEEeCc-HHHHHHHHcCcccccccCCCccccCCCChhhHHHH
Q 016927 6 KRLKFQMNLCASIDGIVNNLSVPFNKVKAKSAPYMAADLVSVGD-SWLSFAIKKRLIEPIAGAEDQDWFKCLSHKWKVYL 84 (380)
Q Consensus 6 ~~v~v~~~~~gs~~~~~~~~~~~~~kl~ag~~~~~~~Dvv~~~~-~~~~~~~~~gll~pld~~~~~~~~~~~~~~~~~~~ 84 (380)
++|+|+.++.+ .++..+++. +.+.+|. .|||+.+.. .++..+++.|+|.||+... .. ....++.+..+
T Consensus 92 p~I~V~~~~~~-~~~~~~kl~---~~~asg~----~PDv~~~~~~~~~~~~~~~g~l~~L~~~~--~~-~~~~~~~~~~~ 160 (456)
T 4g68_A 92 PNVQIVESVTE-NDAYKTKIK---AAIAANE----APDIFQTWAGGFSQPFVEAGKVLQLDSYL--ND-GTKDQLLPGSF 160 (456)
T ss_dssp TTSEEEEEECC-HHHHHHHHH---HHHHTTC----CCSEEEEETTTTTHHHHHTTCBCCCGGGS--SS-SGGGGBCTTTT
T ss_pred cCeEEEEEECC-cHHHHHHHH---HHHhCCC----CCeEEEEcCchHHHHHHHcCCcccchhhh--cc-chHhhhCHHHH
Confidence 45666555544 344444431 1233332 599998754 5677899999999998642 11 11122323222
Q ss_pred hhhCCCccCCCCCEEEeecccceeEEEEeccccccCCCCCCCCHHHhcCc--cc--cCc--eeeec--Chh--HHHHHHH
Q 016927 85 RRNDAGEIDPRGKIWAAPYRWGTMVIAYKKSKFRKHNLAPIEDWKDLWRP--EL--AGR--ISMVN--SPR--EVIGSVL 154 (380)
Q Consensus 85 ~~~~~~~~d~~g~~Y~vP~~~~~~gi~Yn~d~~~~~g~~~p~sW~dL~~~--~~--~gk--i~~~~--~~~--~~~~~al 154 (380)
+. ..+ +|++||||+..++.+|+||+|+|+++|+++|+||++|.+. ++ +|. +++.. ... ..+...+
T Consensus 161 ~~---~~~--dGk~Y~~P~~~~~~~l~Ynkdl~~~aG~~~P~Twde~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~ 235 (456)
T 4g68_A 161 DN---VTY--NGKIYGIPFDQQASVLYINKELFDKYNVKVPTTFSELIDAIKTFKSKGVTPFALGEKDEWPGMWYYDMIA 235 (456)
T ss_dssp GG---GEE--TTEECCEEEEEEEEEEEEEHHHHHHHTCCCCCBHHHHHHHHHHHHHTTCCSBCCCCTTSHHHHHHHHHHH
T ss_pred Hh---cEE--CCEEEEEEeeccceeeeccHHHHhhcCCcccCCHHHHHHHHHHHHHCCCceEEeccCCCcchHHHHHHHH
Confidence 21 234 5999999999999999999999999999999999999974 23 233 22221 111 1222222
Q ss_pred HHcCCC----------CCCCChhhhhccchHHHHHHHHHHhhh--c----ccccchhHHHHhHcCCEEEEEechhcHHHH
Q 016927 155 KYMGAS----------YNSNNIDLQVAGGKISVQQNLALLANQ--A----RLFDSTHYLKAFGIGDVWVAVGWSSDVLPA 218 (380)
Q Consensus 155 ~~~G~~----------~~~~~~~~~~~~~~~~~~~~L~~l~~~--v----~~~~~~~~~~~~~~Gev~~~~~~s~~~~~~ 218 (380)
...|+. ..-.++. ..++.+++.+|... + .....++..+.|.+|+++|.+.++..+..+
T Consensus 236 ~~~gg~~~~~d~~~g~~~~~~~~------~~~al~~~~~l~~~g~~~~~~~~~~~~~~~~~f~~Gk~am~~~g~w~~~~~ 309 (456)
T 4g68_A 236 LREGGVQLTRDALNGKASFDNQA------FTDAAQKLQDMVNAGAFDSGFMGLTRDEATAEFNQGKAAMYFGGNFDAAAF 309 (456)
T ss_dssp HHHHCHHHHHHHHTTSSCSCCHH------HHHHHHHHHHHHHTTCBCTTGGGCCHHHHHHHHHTTCCSEEEEEGGGHHHH
T ss_pred HHhCCchhcccccCCccccCCHH------HHHHHHHHHHHHHcCCCCCccccCChHHHHhhhccCCEEEEEeCchHHHHH
Confidence 233321 1111222 34566666666431 1 123345678899999999999888777666
Q ss_pred HHcC-----CCcEEE-ccC--C--Cc---c--ceeeeEEEeCCCCCcccccCCCCCCChHHHHHHHHHHhhHHhhchhhh
Q 016927 219 VKRM-----SNVAVV-VPK--S--GA---S--LWADLWAIPAASRLETKQIGGRVRGPSPLIHQWIEFCLQTARALPFKQ 283 (380)
Q Consensus 219 ~~~~-----~~i~~~-~P~--e--G~---~--~~~d~~~I~k~s~~~~~~~~~~~~~~~~~A~~fi~fllspe~~~~~~~ 283 (380)
.... .+++++ +|. . |. . .+..+++|+++++|++ +|++||+||++++.|..+..
T Consensus 310 ~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~g~~~~~~i~~~sk~~e------------~A~~fl~~l~s~e~~~~~~~ 377 (456)
T 4g68_A 310 VSDPSSLVKGKIEAVRFPTIEGGKGDPTEYIGGTVGALMVSANSKYKD------------EAVRAAKYLAKQLSDMDYLI 377 (456)
T ss_dssp HTSTTCSCTTTEEEECCCBCTTCCSCTTCEEEEEEEEEEEBTTCSCHH------------HHHHHHHHHHHHHHHHHHHH
T ss_pred HhccccccCCceEEEecCccCCCCCCcceeecccceeeeecCCCcCHH------------HHHHHHHHHCCHHHHHHHHH
Confidence 5432 257764 563 1 21 1 1335789999999998 99999999999999999876
Q ss_pred h
Q 016927 284 E 284 (380)
Q Consensus 284 ~ 284 (380)
.
T Consensus 378 ~ 378 (456)
T 4g68_A 378 A 378 (456)
T ss_dssp T
T ss_pred h
Confidence 4
No 66
>3i3v_A Probable secreted solute-binding lipoprotein; transporter, PSI-II, structural genomics, protein structure initiative; 2.30A {Streptomyces coelicolor}
Probab=99.81 E-value=1.6e-20 Score=185.03 Aligned_cols=253 Identities=13% Similarity=0.074 Sum_probs=160.3
Q ss_pred CceEEEEEEcccHHHHHHhcccchhHhhcCCCCCCCccEEEeC-cHHHHHHHHcCcccccccCCCccccCCCChhhHHHH
Q 016927 6 KRLKFQMNLCASIDGIVNNLSVPFNKVKAKSAPYMAADLVSVG-DSWLSFAIKKRLIEPIAGAEDQDWFKCLSHKWKVYL 84 (380)
Q Consensus 6 ~~v~v~~~~~gs~~~~~~~~~~~~~kl~ag~~~~~~~Dvv~~~-~~~~~~~~~~gll~pld~~~~~~~~~~~~~~~~~~~ 84 (380)
.+|+|++++.++ +..+++. +.+.+|. .|||+.+. ..++..+++.|+|.||+.. .+...-.+++.+..+
T Consensus 38 p~i~V~~~~~~~--~~~~kl~---~~~~sg~----~pDv~~~~~~~~~~~~~~~g~l~~L~~~--~~~~~~~~~~~~~~~ 106 (405)
T 3i3v_A 38 PGVKIKNLVNGD--DLAQVYE---TSRLARK----EADVVMVNLYDKTLAWTDVGATVDVKPY--LDDWGLRGRVLPAAL 106 (405)
T ss_dssp TTCCEEEEECST--THHHHHH---HHHHTTC----CCSEEEECCSTTTTTTTTTTSSCCCHHH--HHHTTCTTTBCHHHH
T ss_pred CCcEEEEEECcH--HHHHHHH---HHHHCCC----CCcEEEecCCcchHHHHhCCCccccHHH--HhhcccccccCHHHH
Confidence 456666666652 2433322 2244443 49999998 6778999999999999863 112221245555555
Q ss_pred hhhCCCccCCCCCEEEeecccceeEEEEeccccccCCCC-CCCCHHHhcCc--cc--cCceeee--cChhHH---HHHHH
Q 016927 85 RRNDAGEIDPRGKIWAAPYRWGTMVIAYKKSKFRKHNLA-PIEDWKDLWRP--EL--AGRISMV--NSPREV---IGSVL 154 (380)
Q Consensus 85 ~~~~~~~~d~~g~~Y~vP~~~~~~gi~Yn~d~~~~~g~~-~p~sW~dL~~~--~~--~gki~~~--~~~~~~---~~~al 154 (380)
+. ..++ +|+.||+|+..++.+|+||+|+|+++|++ +|+||+||++. ++ +|...+. ...... +...+
T Consensus 107 ~~---~~~~-dG~~y~~P~~~~~~~l~Ynkdl~~~~G~~~~P~Twdel~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 182 (405)
T 3i3v_A 107 AD---WTDD-EGRVRAFPYFATNWPVAYNRALLDRAGVDAIPTTGDQLIAAARKLRAKGIAPVTVGGNDWTGQKLLAQII 182 (405)
T ss_dssp HH---TBCT-TSCBCSBCCEEEEECEEEEHHHHHHHTCCSCCCBHHHHHHHHHHHHHTTCEEEECCTTSHHHHHHHHHHH
T ss_pred Hh---hccC-CCcEEEEeccCceEEEEEeHHHHHHcCCCCCCCCHHHHHHHHHHHHHcCceeeEecCCCCchHHHHHHHH
Confidence 43 2332 38999999999999999999999999998 99999999874 23 3443332 211111 11111
Q ss_pred HHc-CCCC--------CCCChhhhhccchHHHHHHHHHHhhh--c----ccccchhHHHHhHcCCEEEEEechhcHHHHH
Q 016927 155 KYM-GASY--------NSNNIDLQVAGGKISVQQNLALLANQ--A----RLFDSTHYLKAFGIGDVWVAVGWSSDVLPAV 219 (380)
Q Consensus 155 ~~~-G~~~--------~~~~~~~~~~~~~~~~~~~L~~l~~~--v----~~~~~~~~~~~~~~Gev~~~~~~s~~~~~~~ 219 (380)
... |.+. .-.++. ..++.+.+.++... + ..++.++..+.|.+|+++|.+.++.....+.
T Consensus 183 ~~~~g~~~~~~~~~~~~~~~~~------~~~al~~~~~l~~~g~~~~~~~~~~~~~~~~~f~~G~~a~~~~~~~~~~~~~ 256 (405)
T 3i3v_A 183 QTFLSQDEARHVYSTGDFGVRG------ARLGIEYFAHLRDAGVFADKAQGLTSDSMTTQFNTEEAAVQSAMSSALAKVP 256 (405)
T ss_dssp GGGCCHHHHHHHHHHTCTTSHH------HHHHHHHHHHHHHTTCBCTTGGGCCHHHHHHHHHTTSEEEEECCHHHHTTSC
T ss_pred HHccChHHHHHhhcCCCCCCHH------HHHHHHHHHHHHHCCCcCCCcccCCHHHHHHHHhcCCeEEEEeCcEehhhhh
Confidence 111 1100 001222 44667777777542 1 1223456788999999999998887664443
Q ss_pred -HcCCCcEEE-cc--C-CCc--cc--ee---eeEEEeCCC-CCcccccCCCCCCChHHHHHHHHHHhhHHhhchhhhhhc
Q 016927 220 -KRMSNVAVV-VP--K-SGA--SL--WA---DLWAIPAAS-RLETKQIGGRVRGPSPLIHQWIEFCLQTARALPFKQEVI 286 (380)
Q Consensus 220 -~~~~~i~~~-~P--~-eG~--~~--~~---d~~~I~k~s-~~~~~~~~~~~~~~~~~A~~fi~fllspe~~~~~~~~~~ 286 (380)
..++++++. +| . .+. .. .. .+++|++++ +|++ +|++||+|++++|.|..+++. .
T Consensus 257 ~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~i~~~s~~~~e------------~A~~fl~~l~s~e~q~~~~~~-~ 323 (405)
T 3i3v_A 257 EKVAGHTEVGGWPLADGAAHDGPTVIRAYTLIGFWISPNGVRKIE------------QVEKFLRFMYRPDVVARFVTE-S 323 (405)
T ss_dssp HHHHHTEEEECBCBCTTCSSSSCEEEEESCSSEEEECHHHHTTHH------------HHHHHHHHHTSHHHHHHHHHH-H
T ss_pred hccccCCcEEeCCCCCCCCCCCCceEeccCceEEEEeCCchhhHH------------HHHHHHHHHhCHHHHHHHHHh-c
Confidence 223466654 34 2 222 22 22 569999999 9998 999999999999999999875 3
Q ss_pred CCCCCC
Q 016927 287 PGASPS 292 (380)
Q Consensus 287 ~~~~p~ 292 (380)
++..|.
T Consensus 324 g~~~P~ 329 (405)
T 3i3v_A 324 GRDMAL 329 (405)
T ss_dssp CCEESB
T ss_pred CCcCCc
Confidence 442353
No 67
>3osq_A Maltose-binding periplasmic protein, green fluore protein; engineered protein, sensor protein, fluorescent protein, MBP maltose sensor; HET: C12 MAL; 1.90A {Escherichia coli}
Probab=99.81 E-value=1.9e-19 Score=188.95 Aligned_cols=105 Identities=17% Similarity=0.073 Sum_probs=78.1
Q ss_pred HHHHHHHHHHhhh--cc-cccchhHHHHhHcCCEEEEEechhcHHHHHHcCCCcEEE-ccC-----CCccceeeeEEEeC
Q 016927 175 ISVQQNLALLANQ--AR-LFDSTHYLKAFGIGDVWVAVGWSSDVLPAVKRMSNVAVV-VPK-----SGASLWADLWAIPA 245 (380)
Q Consensus 175 ~~~~~~L~~l~~~--v~-~~~~~~~~~~~~~Gev~~~~~~s~~~~~~~~~~~~i~~~-~P~-----eG~~~~~d~~~I~k 245 (380)
.++.+.+.++... +. ....++..+.|.+|+++|.+.++..+..+.+.+.+++++ +|. .++..+..+++|++
T Consensus 471 ~eal~~l~~l~~~G~~~~~~~~~~~~~~F~sGkvam~~~g~w~~~~~~~~~~~~gvaplP~~~g~~~~~~~gg~~~~I~k 550 (661)
T 3osq_A 471 KAGLTFLVDLIKNKHMNADTDYSIAEAAFNKGETAMTINGPWAWSNIDTSKVNYGVTVLPTFKGQPSKPFVGVLSAGINA 550 (661)
T ss_dssp HHHHHHHHHHHHTTSSCTTCCHHHHHHHHHTTSEEEEEECGGGHHHHHHHTCCEEEECCCBBTTBCCCCEEEEEEEEEBT
T ss_pred HHHHHHHHHHHHCCCCCCCCCchHHHHHHHCCCeEEEEeChhHHHHHHhcCCCEEEEeCCCCCCCCCcccccceEEEEEC
Confidence 3455555555432 11 122346778999999999999988887777777788886 674 24556778899999
Q ss_pred CCCCcccccCCCCCCChHHHHHHHH-HHhhHHhhchhhhhhcCCCCCC
Q 016927 246 ASRLETKQIGGRVRGPSPLIHQWIE-FCLQTARALPFKQEVIPGASPS 292 (380)
Q Consensus 246 ~s~~~~~~~~~~~~~~~~~A~~fi~-fllspe~~~~~~~~~~~~~~p~ 292 (380)
+|+|++ +|++||+ |++++|.|..+.+. .++.+|.
T Consensus 551 ~Skn~e------------aA~~Fl~~flts~E~q~~~~~~-~g~~~p~ 585 (661)
T 3osq_A 551 ASPNKE------------LAKEFLENYLLTDEGLEAVNKD-KPLGAVA 585 (661)
T ss_dssp TCSCHH------------HHHHHHHHTTSSHHHHHHHHHH-SCCCEES
T ss_pred CCCCHH------------HHHHHHHHHhcCHHHHHHHHHh-CCCCCCc
Confidence 999998 9999999 99999999998865 3444443
No 68
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=99.79 E-value=9.4e-19 Score=183.81 Aligned_cols=218 Identities=16% Similarity=0.149 Sum_probs=143.8
Q ss_pred CccEEEeCcHHHHHHHHcCcccccccCCCccccCCCChhhHHHHhhhCCCccCCCCCEEEeecccceeEEEEeccccccC
Q 016927 41 AADLVSVGDSWLSFAIKKRLIEPIAGAEDQDWFKCLSHKWKVYLRRNDAGEIDPRGKIWAAPYRWGTMVIAYKKSKFRKH 120 (380)
Q Consensus 41 ~~Dvv~~~~~~~~~~~~~gll~pld~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~Y~vP~~~~~~gi~Yn~d~~~~~ 120 (380)
.|||+.+...++..+++.|+|+||+... . ..+++.+..++. ..+| |+.||+|+..++.+|+||||+|++
T Consensus 56 ~PDv~~~~~~~~~~~~~~g~l~~l~~~~--~---~~~~~~~~~~~~---~~~~--Gk~ygvP~~~~~~~l~YNkdl~~~- 124 (694)
T 3dm0_A 56 GPDIIFWAHDRFGGYAQSGLLAEITPAA--A---FQDKLYPFTWDA---VRYN--GKLIAYPIAVEALSLIYNKDLLPN- 124 (694)
T ss_dssp SCSEEEEEGGGHHHHHHTTCBCCCCCCH--H---HHHHBCHHHHHH---TEET--TEECSEEEEEECCEEEEETTTCSS-
T ss_pred CCcEEEECchhHhHHhhCCCcccCCchh--h---hhhhcChhhhhe---EEEC--CEEEEEEEEeeeeEEEEchHHccc-
Confidence 5999999999999999999999998641 1 112334444432 2454 999999999999999999999986
Q ss_pred CCCCCCCHHHhcCc--cc--cCceeeecCh--hHHHHHHHHHcCCCC-CCCChh-----hhhc-cchHHHHHHHHHHhhh
Q 016927 121 NLAPIEDWKDLWRP--EL--AGRISMVNSP--REVIGSVLKYMGASY-NSNNID-----LQVA-GGKISVQQNLALLANQ 187 (380)
Q Consensus 121 g~~~p~sW~dL~~~--~~--~gki~~~~~~--~~~~~~al~~~G~~~-~~~~~~-----~~~~-~~~~~~~~~L~~l~~~ 187 (380)
+|+||+||.+. ++ +|+..+.-.. ...+...+...|+.. ...+.. ..+. ....++.+++.++...
T Consensus 125 ---~P~Twdel~~~a~~l~~~g~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~g~~~~~~~~~~~~~~~~a~~~~~~l~~~ 201 (694)
T 3dm0_A 125 ---PPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPLIAADGGYAFKYENGKYDIKDVGVDNAGAKAGLTFLVDLIKN 201 (694)
T ss_dssp ---CCSBGGGHHHHHHHHHHTTCEEECCCCSSHHHHHHHHHHTTCEEEEEETTEEEEEEEETTSHHHHHHHHHHHHHHHT
T ss_pred ---CCCCHHHHHHHHHHhhhCCcceeEeccCcHHHHHHHHHhCCceEEecCCCcccccccCCCCHHHHHHHHHHHHHHHc
Confidence 89999999863 33 3554332211 112222234444421 111110 0010 0133455566555422
Q ss_pred --cc-cccchhHHHHhHcCCEEEEEechhcHHHHHHcCCCcEEE-ccC-C----CccceeeeEEEeCCCCCcccccCCCC
Q 016927 188 --AR-LFDSTHYLKAFGIGDVWVAVGWSSDVLPAVKRMSNVAVV-VPK-S----GASLWADLWAIPAASRLETKQIGGRV 258 (380)
Q Consensus 188 --v~-~~~~~~~~~~~~~Gev~~~~~~s~~~~~~~~~~~~i~~~-~P~-e----G~~~~~d~~~I~k~s~~~~~~~~~~~ 258 (380)
+. ....+.....|.+|+++|.+.++..+..+.+.+.++++. +|. + +...+..+++|+++++|++
T Consensus 202 ~~~~~~~~~~~~~~~f~~G~~am~~~g~w~~~~~~~~~~~~gv~~~P~~~g~~~~~~~g~~~~~i~~~s~~~~------- 274 (694)
T 3dm0_A 202 KHMNADTDYSIAEAAFNKGETAMTINGPWAWSNIDTSAVNYGVTVLPTFKGQPSKPFVGVLSAGINAASPNKE------- 274 (694)
T ss_dssp TSSCTTCCHHHHHHHHHTTCEEEEEECGGGHHHHHHTTCCEEEECCCEETTEECCCEEEEEEEEEBTTCSCHH-------
T ss_pred CCCCCCCChhhHHHHHhCCCeeEEEcCccchhhHhhcCCcceeecCCCCCCCCCCceeeeEEEEEEcCCCCHH-------
Confidence 11 112234567899999999999887776666667778764 563 1 2345667889999999998
Q ss_pred CCChHHHHHHHH-HHhhHHhhchhhhh
Q 016927 259 RGPSPLIHQWIE-FCLQTARALPFKQE 284 (380)
Q Consensus 259 ~~~~~~A~~fi~-fllspe~~~~~~~~ 284 (380)
+|++||. |+++++.+..+.+.
T Consensus 275 -----~A~~f~~~~~~~~~~~~~~~~~ 296 (694)
T 3dm0_A 275 -----LAKEFLENYLLTDEGLEAVNKD 296 (694)
T ss_dssp -----HHHHHHHHTTTSHHHHHHHHHH
T ss_pred -----HHHHHHHHHhcCHHHHHHHHhc
Confidence 9999995 89999998887764
No 69
>2nvu_B Maltose binding protein/NEDD8-activating enzyme E1 catalytic subunit chimera; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: c.111.1.2 c.94.1.1
Probab=99.77 E-value=2e-18 Score=185.40 Aligned_cols=218 Identities=17% Similarity=0.182 Sum_probs=142.7
Q ss_pred CccEEEeCcHHHHHHHHcCcccccccCCCccccCCCChhhHHHHhhhCCCccCCCCCEEEeecccceeEEEEeccccccC
Q 016927 41 AADLVSVGDSWLSFAIKKRLIEPIAGAEDQDWFKCLSHKWKVYLRRNDAGEIDPRGKIWAAPYRWGTMVIAYKKSKFRKH 120 (380)
Q Consensus 41 ~~Dvv~~~~~~~~~~~~~gll~pld~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~Y~vP~~~~~~gi~Yn~d~~~~~ 120 (380)
.|||+.++..++..+++.|+|+||+... ....++ .+...+. ..+ +|+.||+|+.+++.+++||+|+|++
T Consensus 60 ~PDVv~~~~~~~~~~~~~G~L~~L~~~~--~~~~~~---~~~~~~~---~~~--dGk~YgvP~~~~~~~l~YNkdlf~~- 128 (805)
T 2nvu_B 60 GPDIIFWAHDRFGGYAQSGLLAEITPDK--AFQDKL---YPFTWDA---VRY--NGKLIAYPIAVEALSLIYNKDLLPN- 128 (805)
T ss_dssp SCSEEEEEHHHHHHHHHTTCBCCCCCCH--HHHTSB---CTTHHHH---TEE--TTEECEEEEEEEECEEEECTTTCSS-
T ss_pred CCeEEEECchhHHHHHHCCceecCCcch--hhHhhc---CHHHHhh---eEE--CCEEEEEecccceeEEEEEhHhhcC-
Confidence 5999999888999999999999998641 111222 2222221 234 4999999999999999999999986
Q ss_pred CCCCCCCHHHhcCc--ccc--Cceeee-c-ChhHHHHHHHHHcCCCC-CCCChh-----hhhc-cchHHHHHHHHHHhhh
Q 016927 121 NLAPIEDWKDLWRP--ELA--GRISMV-N-SPREVIGSVLKYMGASY-NSNNID-----LQVA-GGKISVQQNLALLANQ 187 (380)
Q Consensus 121 g~~~p~sW~dL~~~--~~~--gki~~~-~-~~~~~~~~al~~~G~~~-~~~~~~-----~~~~-~~~~~~~~~L~~l~~~ 187 (380)
+|+||+||++. +++ |+..+. + .....+...+...|+.. +..+.. ..+. ....++.+++.++..+
T Consensus 129 ---~P~TWdEl~~~a~klk~~g~~~~~~~~~~~~~~~~~~~~~Gg~~~~~~~g~~~~~~~~~~~~~~~~al~~~~~l~~~ 205 (805)
T 2nvu_B 129 ---PPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPLIAADGGYAFKYENGKYDIKDVGVDNAGAKAGLTFLVDLIKN 205 (805)
T ss_dssp ---CCSBSTTHHHHHHHHHTTTCEEECCCCSSHHHHHHHHHHTTCEEEEECSSSEEEEEEETSSHHHHHHHHHHHHHHHS
T ss_pred ---CCcCHHHHHHHHHHHHhcCCCceEeecCchHHHHHHHHhcCCceeeccCCcccccccccCCHHHHHHHHHHHHHHHc
Confidence 89999999863 444 543322 1 11111222334556532 111110 0011 1134566667666543
Q ss_pred cc---cccchhHHHHhHcCCEEEEEechhcHHHHHHcCCCcEE-EccC-CC----ccceeeeEEEeCCCCCcccccCCCC
Q 016927 188 AR---LFDSTHYLKAFGIGDVWVAVGWSSDVLPAVKRMSNVAV-VVPK-SG----ASLWADLWAIPAASRLETKQIGGRV 258 (380)
Q Consensus 188 v~---~~~~~~~~~~~~~Gev~~~~~~s~~~~~~~~~~~~i~~-~~P~-eG----~~~~~d~~~I~k~s~~~~~~~~~~~ 258 (380)
-. ....++..+.|.+|+++|.+.++.....+.+.+.++++ .+|. +| ...+..+++|+++++|++
T Consensus 206 g~~~~~~~~~~~~~~f~~Gk~am~~~g~w~~~~~~~~~~~~g~~~~P~~~g~~~~~~~g~~~~~I~~~sk~~e------- 278 (805)
T 2nvu_B 206 KHMNADTDYSIAEAAFNKGETAMTINGPWAWSNIDTSKVNYGVTVLPTFKGQPSKPFVGVLSAGINAASPNKE------- 278 (805)
T ss_dssp SSCCTTCCHHHHHHHHTTTCEEEEEECTTTTTTTTTTTCCCCCBCCCBCSSSCCCCCEEEEEEEEBSSCSTTH-------
T ss_pred CCCCCCCCHHHHHHHHHCCCEEEEEeChhhHHHHhhcCCCeEEEECCCCCCCCccceecceEEEEECCCCCHH-------
Confidence 11 12234567899999999999877655444444556776 3574 33 345778899999999998
Q ss_pred CCChHHHHHHHH-HHhhHHhhchhhhh
Q 016927 259 RGPSPLIHQWIE-FCLQTARALPFKQE 284 (380)
Q Consensus 259 ~~~~~~A~~fi~-fllspe~~~~~~~~ 284 (380)
+|++||+ |+++++.|..+.+.
T Consensus 279 -----aA~~Fi~~fl~s~e~q~~~~~~ 300 (805)
T 2nvu_B 279 -----LAKEFLENYLLTDEGLEAVNKD 300 (805)
T ss_dssp -----HHHHHHHTTTSSHHHHHHHHTT
T ss_pred -----HHHHHHHHHhcCHHHHHHHHhc
Confidence 9999995 99999999988764
No 70
>2w7y_A FCSSBP, probable sugar ABC transporter, sugar-binding protein; solute-binding protein, blood group antigen, carbohydrate transport; HET: A2G GAL FUC; 2.35A {Streptococcus pneumoniae}
Probab=99.77 E-value=2.7e-19 Score=177.81 Aligned_cols=229 Identities=15% Similarity=0.149 Sum_probs=144.9
Q ss_pred CccEEEeCcHHHH-HHHHcCcccccccCCCccccCCCChhhHHHHhhhCCCccCCCCCEEEeecccceeEEEEecccccc
Q 016927 41 AADLVSVGDSWLS-FAIKKRLIEPIAGAEDQDWFKCLSHKWKVYLRRNDAGEIDPRGKIWAAPYRWGTMVIAYKKSKFRK 119 (380)
Q Consensus 41 ~~Dvv~~~~~~~~-~~~~~gll~pld~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~Y~vP~~~~~~gi~Yn~d~~~~ 119 (380)
.|||+.+...++. .+++.|+|+||+.. .+. .++.+..+..... ..+ +|+.||+|+..++.+|+||+|+|++
T Consensus 99 ~pDv~~~~~~~~~~~~~~~g~l~~L~~~--~~~-~~~~~~~~~~~~~---~~~--dGk~ygvP~~~~~~~l~YNkdl~~~ 170 (430)
T 2w7y_A 99 FPDVIDLAGNAVSLAAIEQKLVLDLKPY--IDS-NKLEKNVGLNYKQ---NQK--DGKIYTVHEQLFTMGLWYNKDIFAK 170 (430)
T ss_dssp CCSEEECTTCCCCHHHHHTTCBCCCHHH--HHH-TTCHHHHTTHHHH---TEE--TTEECCBCSBCEEECEEEEHHHHHH
T ss_pred CCcEEEeCCchHHHHHHhCCCccCchHh--hcc-ccHhhhhhHhhhc---cCc--CCeEEEeeccccceEEEEeHHHHHH
Confidence 5999999866554 45789999999863 111 1333322211111 124 4999999999999999999999999
Q ss_pred CCCCCC---CCHHHhcCc--ccc--C-ceeeecChh--HHHHHHHH--HcCCCCCCCCh-hhhhc-cchHHHHHHHHHHh
Q 016927 120 HNLAPI---EDWKDLWRP--ELA--G-RISMVNSPR--EVIGSVLK--YMGASYNSNNI-DLQVA-GGKISVQQNLALLA 185 (380)
Q Consensus 120 ~g~~~p---~sW~dL~~~--~~~--g-ki~~~~~~~--~~~~~al~--~~G~~~~~~~~-~~~~~-~~~~~~~~~L~~l~ 185 (380)
+|+++| +||+||++. +++ | .+++..... ..+...+. ..|.++.+.+. ...+. ....++.+++.++.
T Consensus 171 aGl~~P~~~~Twdel~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~al~~~~~l~ 250 (430)
T 2w7y_A 171 AGAKTPDQWNTWDDFTQAMASIRKQDGVYAFGAGEPSIRLFNTVLGTTENGRKLLDKPLTKEGIESKEFADALKMVMKEI 250 (430)
T ss_dssp HTCCCGGGCCSHHHHHHHHHHHHTSSSCEEECCBTTHHHHHHHHHTTSHHHHHHTTSCCCTTTTTSHHHHHHHHHHHHHH
T ss_pred cCCCCCCCCCCHHHHHHHHHHHHhcCCceEeeCCchHHHHHHHHHhhhcccceeccccccccccCCHHHHHHHHHHHHHH
Confidence 999877 899999985 343 3 344433211 12222221 23432211110 00111 11345666776665
Q ss_pred hh-c-c--cccchhHHHHhHcCCEEEEEechhcHHHHHHcCCCcEEE-ccCC-CccceeeeEEEeCC--CCCcccccCCC
Q 016927 186 NQ-A-R--LFDSTHYLKAFGIGDVWVAVGWSSDVLPAVKRMSNVAVV-VPKS-GASLWADLWAIPAA--SRLETKQIGGR 257 (380)
Q Consensus 186 ~~-v-~--~~~~~~~~~~~~~Gev~~~~~~s~~~~~~~~~~~~i~~~-~P~e-G~~~~~d~~~I~k~--s~~~~~~~~~~ 257 (380)
.. . . ..+..+..+.|.+|+++|.+.++.....+.+. +++++. +|.. +...+..+++|+++ ++|++
T Consensus 251 ~~~~~~~~~~~~~~~~~~f~~G~~am~~~g~w~~~~~~~~-~~~~~~~~P~~~~~~~~~~~~~i~~~~~s~~~e------ 323 (430)
T 2w7y_A 251 QANGSKNAGGDANAYSKDFQEGKSAVFFNGVWASGEMSKN-PSLAPGIYPAGVAISSSGGGITISSKMSEAKQK------ 323 (430)
T ss_dssp HHTCGGGCSBCHHHHHHHHHTTSEEEECCCGGGHHHHTTS-TTEEEECBGGGEEEEECCCCEEEBSSSCHHHHH------
T ss_pred HcCCCCccccChHHHHHHHhcCCeEEEEcChhhhhhhhcC-CCCceeccCCCcccccCCcceEEecCCCcccHH------
Confidence 32 1 1 11234677899999999999877766555433 678774 6753 23345568999997 77887
Q ss_pred CCCChHHHHHHHHHHhhHHhhchhhhhhcCCCCCC
Q 016927 258 VRGPSPLIHQWIEFCLQTARALPFKQEVIPGASPS 292 (380)
Q Consensus 258 ~~~~~~~A~~fi~fllspe~~~~~~~~~~~~~~p~ 292 (380)
+|++||+|++++|.|..+++. .++ .|.
T Consensus 324 ------~A~~fl~~l~s~e~~~~~~~~-~g~-~P~ 350 (430)
T 2w7y_A 324 ------LALEFLKYMTSDDVQKVIFEK-VGA-NPS 350 (430)
T ss_dssp ------HHHHHHHHHTSHHHHHHHHHT-SCS-CBS
T ss_pred ------HHHHHHHHhcCHHHHHHHHHH-hCC-CCC
Confidence 999999999999999988764 343 443
No 71
>4gqo_A LMO0859 protein; virulence, pathogenesis, vaccine candidate, center for struc genomics of infectious diseases, csgid, niaid; HET: MSE PGE; 2.10A {Listeria monocytogenes}
Probab=99.76 E-value=2.9e-18 Score=170.05 Aligned_cols=255 Identities=10% Similarity=0.114 Sum_probs=150.4
Q ss_pred CCceEEEEEEcccHHHHHHhcccchhHhhcCCCCCCCccEEE-eCcHHHHHHHHcCcccccccCCCccccCCCChhhHHH
Q 016927 5 GKRLKFQMNLCASIDGIVNNLSVPFNKVKAKSAPYMAADLVS-VGDSWLSFAIKKRLIEPIAGAEDQDWFKCLSHKWKVY 83 (380)
Q Consensus 5 ~~~v~v~~~~~gs~~~~~~~~~~~~~kl~ag~~~~~~~Dvv~-~~~~~~~~~~~~gll~pld~~~~~~~~~~~~~~~~~~ 83 (380)
+++|+|+++..++.++..+++. +.+.+|. .|||+. .+..++..+++.|+|.||+.....+... .....+..
T Consensus 57 ~p~i~V~~~~~~~~~~~~~kl~---~~~asg~----~PDv~~~~~~~~~~~~~~~g~l~~L~~~~~~~~~~-~~~~~~~~ 128 (433)
T 4gqo_A 57 NPDVTIEVSQMKESPSSEATIQ---SAIASKT----APTMSENINRSFAAQLADSKAIVPLNDVKGLDDVV-KERNMSET 128 (433)
T ss_dssp CTTEEEEEEECCCSSSHHHHHH---HHHHHTC----CCSEEEEECHHHHHHHHHTTSBCCGGGSTTHHHHH-HHTTCHHH
T ss_pred CcCeEEEEEEcCCcHHHHHHHH---HHHHCCC----CCeEEEEcCHHHHHHHHHCCCEEEChhhhcccchh-hhhhhHHH
Confidence 4568888777766555555532 1234443 499997 5777899999999999998642111000 01112222
Q ss_pred HhhhCCCccCCCCCEEEeecccceeEEEEeccccccCCCC-CCCCHHHhcCc--ccc----Cceeeec----C--h----
Q 016927 84 LRRNDAGEIDPRGKIWAAPYRWGTMVIAYKKSKFRKHNLA-PIEDWKDLWRP--ELA----GRISMVN----S--P---- 146 (380)
Q Consensus 84 ~~~~~~~~~d~~g~~Y~vP~~~~~~gi~Yn~d~~~~~g~~-~p~sW~dL~~~--~~~----gki~~~~----~--~---- 146 (380)
+.. ....+|+.||+|+..++.+|+||+|+|+++|++ +|+||+||.+. +++ +.+.+.. . .
T Consensus 129 ~~~----~~~~dGk~y~~P~~~~~~~l~Ynkdlf~~aGl~~pP~Twde~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 204 (433)
T 4gqo_A 129 MDS----WKFSDGNQYVLPVYSNPILFAWRLDTLKELGYDAPPKTYSEALEVGKKLKAKYPDKVLWAKGDLSDPTAWMRW 204 (433)
T ss_dssp HHH----TCCTTSCCCCEEEEEEECEEEECHHHHHHTTCSSCCCBHHHHHHHHHHHHHHCTTCEEEECGGGGCCCGGGGG
T ss_pred HHH----hcccCCEEEEEeccCceEEEEEehhhHHHcCCCCCCCCHHHHHHHHHHHHHhCCCCceeccccccccchhhhh
Confidence 221 122359999999999999999999999999984 69999999874 222 2222111 0 0
Q ss_pred hHHHHHHHHHcCCCCCCCChhhhhc-cchHHHHHHHHHHhhhcccccchhHHHHhHcCCEEEEEechhcHHHHHHcC---
Q 016927 147 REVIGSVLKYMGASYNSNNIDLQVA-GGKISVQQNLALLANQARLFDSTHYLKAFGIGDVWVAVGWSSDVLPAVKRM--- 222 (380)
Q Consensus 147 ~~~~~~al~~~G~~~~~~~~~~~~~-~~~~~~~~~L~~l~~~v~~~~~~~~~~~~~~Gev~~~~~~s~~~~~~~~~~--- 222 (380)
...+.......|......+....+. ....++.+++.+|...- .+..+...+.|.+|+++|.+.++..+..+....
T Consensus 205 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~al~~~~~l~~~g-~~~~~~~~~~f~~G~~am~~~g~w~~~~~~~~~~~~ 283 (433)
T 4gqo_A 205 FDFFPLYDAASKGNAFVEDGKLVADDKAGTELLTFMSELQKNK-LLLASKATDPFETGTSIMADNGPWTFPNWDEKFPEL 283 (433)
T ss_dssp GTHHHHHHHHTTSCCSEETTEECCCHHHHHHHHHHHHHHHHTT-CEECSCCSSHHHHTSEEEEEECTTHHHHHHHHCTTC
T ss_pred hHHHHHHhhhccccccccCCceeecCHHHHHHHHHHHHHHHhc-CCChhhHHHHHhCCceeEEEcchHHHHHHHHhchhh
Confidence 1122333334454443322221111 11345556666664321 222334556899999999998776665554432
Q ss_pred ---CCcEEE---ccC--C-----CccceeeeEE--EeCCCCCcccccCCCCCCChHHHHHHHHHHhhHHhh-chhhhh
Q 016927 223 ---SNVAVV---VPK--S-----GASLWADLWA--IPAASRLETKQIGGRVRGPSPLIHQWIEFCLQTARA-LPFKQE 284 (380)
Q Consensus 223 ---~~i~~~---~P~--e-----G~~~~~d~~~--I~k~s~~~~~~~~~~~~~~~~~A~~fi~fllspe~~-~~~~~~ 284 (380)
.++.+. +|. . +...+..+++ |+++++|++ +|++||+|++++|.+ ..+++.
T Consensus 284 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~~~~sk~~e------------aA~~fl~~l~s~e~~~~~~~~~ 349 (433)
T 4gqo_A 284 KYNENYAITAPLVPDSMVNEENVATYADSKGVVMYAQATDKEKE------------AAMDFLKFVYNDDKNDLKFLET 349 (433)
T ss_dssp CBTTTBEEECCCBCGGGTTCSSCCEEEEEEEEEEBTTSCHHHHH------------HHHHHHHHHTTSHHHHHHHHHH
T ss_pred hcccccceeeecCCccccCccccceeccccceEEeecCCchhHH------------HHHHHHHHHcCCHHHHHHHHHH
Confidence 234443 232 1 1222334444 467778888 999999999998865 456654
No 72
>1sbp_A Sulfate-binding protein; 1.70A {Salmonella typhimurium} SCOP: c.94.1.1
Probab=99.73 E-value=2.5e-17 Score=156.07 Aligned_cols=182 Identities=16% Similarity=0.174 Sum_probs=131.5
Q ss_pred CccEEEeCc-HHHHHHHHcCcccccccCCCccccCCCChhhHHHHhhhCCCccCCCCCEEEeecccceeEEEEecccccc
Q 016927 41 AADLVSVGD-SWLSFAIKKRLIEPIAGAEDQDWFKCLSHKWKVYLRRNDAGEIDPRGKIWAAPYRWGTMVIAYKKSKFRK 119 (380)
Q Consensus 41 ~~Dvv~~~~-~~~~~~~~~gll~pld~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~Y~vP~~~~~~gi~Yn~d~~~~ 119 (380)
.+||+++++ .++..+.+.|+++|.+.. .+ +. .++|| +++.+|+||++.. .
T Consensus 57 ~~Dv~~~~~~~~~~~~~~~g~l~~~~~~-------~~----~~----------------~~~p~-~~~~~l~yn~~~~-~ 107 (310)
T 1sbp_A 57 EADTVTLALAYDVNAIAERGRIDKNWIK-------RL----PD----------------DSAPY-TSTIVFLVRKGNP-K 107 (310)
T ss_dssp CCSEEEESSHHHHHHHHHTTSSCTTGGG-------GS----HH----------------HHCSE-EBCEEEEEETTCT-T
T ss_pred CCCEEEeCcHHHHHHHHhCCCcCcchhh-------cC----Cc----------------cCCce-eEEEEEEEeCCCC-C
Confidence 599999886 789999999999985321 11 10 02566 5678999999973 2
Q ss_pred CCCCCCCCHHHhcCccccCceeeecChhHHH---H--HHH----HHcCCCCCCCChhhhhccchHHHHHHHHHHhhhccc
Q 016927 120 HNLAPIEDWKDLWRPELAGRISMVNSPREVI---G--SVL----KYMGASYNSNNIDLQVAGGKISVQQNLALLANQARL 190 (380)
Q Consensus 120 ~g~~~p~sW~dL~~~~~~gki~~~~~~~~~~---~--~al----~~~G~~~~~~~~~~~~~~~~~~~~~~L~~l~~~v~~ 190 (380)
+|+||+||+++++ +|++.+...... . ..+ ...|++ ..++++.+.++++++..
T Consensus 108 ----~p~tw~dL~~~~~--ki~~~~p~~~~~~~~~~~~~~~~~~~~~gg~-------------~~~a~~~l~~l~~~~~~ 168 (310)
T 1sbp_A 108 ----QIHDWNDLIKPGV--SVITPNPKSSGGARWNYLAAWGYALHHNNND-------------QAKAEDFVKALFKNVEV 168 (310)
T ss_dssp ----CCCSGGGGGSTTC--CEECCCTTTCHHHHHHHHHHHHHHHHHTTTC-------------HHHHHHHHHHHHHTEEE
T ss_pred ----CCCCHHHHcCccc--eEecCCCcccchhHHHHHHHHHHHHHHcCCC-------------HHHHHHHHHHHHhcCcc
Confidence 7899999999876 687765221111 1 111 134431 23577888888887665
Q ss_pred ccch---hHHHHhHcCCEEEEEechhcHHHHHHc-C-CCcEEEccCCCccceeeeEEEeCCC----CCcccccCCCCCCC
Q 016927 191 FDST---HYLKAFGIGDVWVAVGWSSDVLPAVKR-M-SNVAVVVPKSGASLWADLWAIPAAS----RLETKQIGGRVRGP 261 (380)
Q Consensus 191 ~~~~---~~~~~~~~Gev~~~~~~s~~~~~~~~~-~-~~i~~~~P~eG~~~~~d~~~I~k~s----~~~~~~~~~~~~~~ 261 (380)
+..+ ...+.+.+|++++++.|++.+.....+ + .++++++|++|. .+..+++|++++ +|++
T Consensus 169 ~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~g~~~~~~v~P~~g~-~~~~~~~i~~~~~~~s~~~~---------- 237 (310)
T 1sbp_A 169 LDSGARGSTNTFVERGIGDVLIAWENEALLATNELGKDKFEIVTPSESI-LAEPTVSVVDKVVEKKDTKA---------- 237 (310)
T ss_dssp CCSSHHHHHHHHHTSCCCSEEEEEHHHHHHHHHTTTTTTEEEECCSEEE-CBCCEEEECHHHHHHHTCHH----------
T ss_pred cCCccHHHHHHHHhCCCccEEEeechHHHHHHHhcCCCceEEEccCCce-eccCCeEEeccccccccCHH----------
Confidence 5432 256778899999999999887766555 5 689999998665 445688999877 8988
Q ss_pred hHHHHHHHHHHhhHHhhchhhh
Q 016927 262 SPLIHQWIEFCLQTARALPFKQ 283 (380)
Q Consensus 262 ~~~A~~fi~fllspe~~~~~~~ 283 (380)
+|++||+|++|++.|..+.+
T Consensus 238 --~A~~fi~fl~s~e~q~~~~~ 257 (310)
T 1sbp_A 238 --VAEAYLKYLYSPEGQEIAAK 257 (310)
T ss_dssp --HHHHHHHGGGSHHHHHHHHH
T ss_pred --HHHHHHHHHcChHHHHHHHH
Confidence 99999999999999988764
No 73
>3a09_A ALGQ1; sugar binding protein, alginate; HET: MAW BEM MAV; 1.40A {Sphingomonas} PDB: 1y3p_A* 1y3q_A 1y3n_A* 3vlv_A* 3vlu_A* 3vlw_A* 1j1n_A* 1kwh_A
Probab=99.69 E-value=6.1e-17 Score=162.81 Aligned_cols=225 Identities=15% Similarity=0.151 Sum_probs=134.3
Q ss_pred CccEEEeCc--HHHHHHHHcCcccccccCCCccccCCCChhh---HHHHhhhCCCccCCCCCEEEeecc---cceeEEEE
Q 016927 41 AADLVSVGD--SWLSFAIKKRLIEPIAGAEDQDWFKCLSHKW---KVYLRRNDAGEIDPRGKIWAAPYR---WGTMVIAY 112 (380)
Q Consensus 41 ~~Dvv~~~~--~~~~~~~~~gll~pld~~~~~~~~~~~~~~~---~~~~~~~~~~~~d~~g~~Y~vP~~---~~~~gi~Y 112 (380)
.|||+.++. ..+.+++++|+|.||+...+ ...|++.... +..... ....+|++||+|+. ..+.+++|
T Consensus 67 ~PDi~~~~~~~~~~~~~~~~G~l~dL~d~i~-~~~p~~k~~~~~~~~~~~~----~~~~dGkiY~lP~~~~~~~~~~~~y 141 (490)
T 3a09_A 67 LPDIVGGDNLKDKFIRYGMEGAFIPLNKLID-QNAPNLKAFFKTHPEVQRA----ITAPDGNIYYLPYVPDGLVSRGYFI 141 (490)
T ss_dssp CCSEEEETTCHHHHHHHHHHTSBCCCHHHHH-HHCHHHHHHHHHCHHHHHH----HBCTTSCBCCEEEECCCSCCEEEEE
T ss_pred cCeEEEECCchHHHHHHHHCCCEEECHHHHH-hhChhHHHHHhhCHHHHHH----hcccCCeEEEEEeecCCCcceEEEE
Confidence 599999874 47889999999999986310 1123333222 112211 12345999999984 44668999
Q ss_pred eccccccCCCCCCCCHHHhcCc--cc-------cCc---eeeecChhHHHHHHHHHcCCC---------CCCCChhh--h
Q 016927 113 KKSKFRKHNLAPIEDWKDLWRP--EL-------AGR---ISMVNSPREVIGSVLKYMGAS---------YNSNNIDL--Q 169 (380)
Q Consensus 113 n~d~~~~~g~~~p~sW~dL~~~--~~-------~gk---i~~~~~~~~~~~~al~~~G~~---------~~~~~~~~--~ 169 (380)
|+|.|+++|+++|+||++|.+. ++ .|+ +.+...............+.. ....+... .
T Consensus 142 nkd~l~k~Gl~~P~T~de~~~~~~~~k~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gk~~~~ 221 (490)
T 3a09_A 142 RQDWLDKLHLKTPQTVDELYTVLKAFKEKDPNGNGKADEIPFINRDPEEVFRLVNFWGARSTGSNTWMDFYVENGKIKHP 221 (490)
T ss_dssp EHHHHHHTTCCCCCBHHHHHHHHHHHHHSCTTCSSSCCCEEECCSCTHHHHHGGGGGTCCSCSSSSTTCCEEETTEEECG
T ss_pred EHHHHHHcCCCCCCchhHHHHHHHHHHHhcccccCCcceeeeeccCCcchhhhhhhhhhhhccccccchhhhccCceeec
Confidence 9999999999999999999863 11 122 333322222221111122211 10011110 0
Q ss_pred hc-cchHHHHHHHHHHhhh--c----ccccchhHHHHhHcCCEEEEEechhcHHHHHH----cCCCcEE--Ec-cC--CC
Q 016927 170 VA-GGKISVQQNLALLANQ--A----RLFDSTHYLKAFGIGDVWVAVGWSSDVLPAVK----RMSNVAV--VV-PK--SG 233 (380)
Q Consensus 170 ~~-~~~~~~~~~L~~l~~~--v----~~~~~~~~~~~~~~Gev~~~~~~s~~~~~~~~----~~~~i~~--~~-P~--eG 233 (380)
+. ....++.+.+.++... + .+.+.++..+.|.+|+++|...|......... ..+...+ +. |. .|
T Consensus 222 ~~~~~~~~al~~~~~l~~~G~i~~~~~t~~~~~~~~~f~~G~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g 301 (490)
T 3a09_A 222 FAEVAFKDGIKHVAQWYKEGLIDPEIFTRKARSREQTFGNNIGGMTHDWFASTALFNDALSKNIPGFKLVPMAPPINSKG 301 (490)
T ss_dssp GGSHHHHHHHHHHHHHHHTTSBCTTTTTCGGGHHHHHHHTTCEEEEEEEHHHHHHHHHHTTTTSTTCCEEEECCCBCTTS
T ss_pred cCCHHHHHHHHHHHHHHHcCCCCcccccCCHHHHHHHHHCCCEEEEEechHHHHHHHHHHhhcCCCceEEeeccCcCCCC
Confidence 11 1244556666665431 2 12234567789999999999988766544332 2333333 22 21 12
Q ss_pred --------ccceeeeEEEeCCCCCcccccCCCCCCChHHHHHHHHHHhhHHhhchhh
Q 016927 234 --------ASLWADLWAIPAASRLETKQIGGRVRGPSPLIHQWIEFCLQTARALPFK 282 (380)
Q Consensus 234 --------~~~~~d~~~I~k~s~~~~~~~~~~~~~~~~~A~~fi~fllspe~~~~~~ 282 (380)
......+++|+++|+|++ +|++||+|++++|.|..+.
T Consensus 302 ~~~~~~~~~~~~~~~~~I~~~sk~~e------------~A~~fl~~l~s~e~~~l~~ 346 (490)
T 3a09_A 302 QRWEEDARQIPRPDGWAITATNKNPV------------ETIKLFDFYFGPKGRELSN 346 (490)
T ss_dssp CCCBCCCCCSSCSCEEEEBTTCSCHH------------HHHHHHHHTTSHHHHHHHH
T ss_pred cccCCCccccccceEEEEECCCCCHH------------HHHHHHHHhCCHHHHHHHh
Confidence 112345799999999999 9999999999999987653
No 74
>3omb_A Extracellular solute-binding protein, family 1; PSI-2, midwest center for structural genomics, protein struc initiative, MCSG; 2.10A {Bifidobacterium longum subsp}
Probab=99.67 E-value=3.4e-17 Score=167.53 Aligned_cols=248 Identities=15% Similarity=0.103 Sum_probs=143.5
Q ss_pred ceEEEEEEcccHHHHHHhcccchhHhhcCCCCCCCccEEEeCcHHHHHHH-HcCcccccccCCCccccCCCChhh---HH
Q 016927 7 RLKFQMNLCASIDGIVNNLSVPFNKVKAKSAPYMAADLVSVGDSWLSFAI-KKRLIEPIAGAEDQDWFKCLSHKW---KV 82 (380)
Q Consensus 7 ~v~v~~~~~gs~~~~~~~~~~~~~kl~ag~~~~~~~Dvv~~~~~~~~~~~-~~gll~pld~~~~~~~~~~~~~~~---~~ 82 (380)
+|+|+.+..+ ..+..+++. +.+.+|. .|||+..+ .+...+. ..|+|.||+... +..+++.++. +.
T Consensus 69 gi~V~~~~~~-~~~~~~kl~---~~~asg~----~pDi~~~~-~~~~~~~~~~G~l~~L~~~i--~~~~~~~~~~~~~p~ 137 (535)
T 3omb_A 69 DCKIEWQEVT-REAWAQQKN---ATLASGD----IADVNLNG-YGAVEAYQYPGMFEDLSKDL--DKLPNVKAFFKQKPD 137 (535)
T ss_dssp TSEEEEEEEE-HHHHHHHHH---HHHHHTC----CCSEEESS-CCTHHHHHSTTSBCCGGGGG--GGCHHHHHHHHHCHH
T ss_pred CCeEEEEecC-chhHHHHHH---HHHhCCC----CCcEEEec-CChhhhHhcCCcEEehHHHH--HhChhHHHHHHhCHH
Confidence 4555555544 234444421 1133443 59999993 3455566 699999999742 2334444442 33
Q ss_pred HHhhhCCCccCCCCCEEEeecc------cceeEEEEeccccccCCCCCCCCHHHhcCc--ccc-------Cc---eeeec
Q 016927 83 YLRRNDAGEIDPRGKIWAAPYR------WGTMVIAYKKSKFRKHNLAPIEDWKDLWRP--ELA-------GR---ISMVN 144 (380)
Q Consensus 83 ~~~~~~~~~~d~~g~~Y~vP~~------~~~~gi~Yn~d~~~~~g~~~p~sW~dL~~~--~~~-------gk---i~~~~ 144 (380)
+.... ...+|+.|++|+. ..+.+++||+|+|+++|+++|+||+||.+. +++ |+ +.+.-
T Consensus 138 ~~~~~----~~~dG~~Y~lP~~~~~~~~~~~~~l~ynkdll~~~Gl~~P~Twdel~~~~~~~k~~~p~g~G~~~~~p~~~ 213 (535)
T 3omb_A 138 AKKMS----TDSKGRIYAIADGRGKAYSGTGQHMLINKAWLDKLGLQVPTTWDELENVLKAFKTQDPNGNGQADEIPMNI 213 (535)
T ss_dssp HHHHH----CCTTSCCSSEEEECCGGGCSCSCEEEEEHHHHHHHTCCCCCBHHHHHHHHHHHHHSCTTCSSSSCCEEECC
T ss_pred HHHhc----cCCCCCEEEeecccCcCccccccceEeeHHHHHHcCCCCCCCHHHHHHHHHHHHhhCCCCCCCCCeeeeEe
Confidence 33321 1246999999999 556899999999999999999999999974 222 22 33321
Q ss_pred Ch--h---HH--HHHHHHHcCCC-----------CCCCChhhh--hc-cchHHHHHHHHHHhhh--cc----cccchhHH
Q 016927 145 SP--R---EV--IGSVLKYMGAS-----------YNSNNIDLQ--VA-GGKISVQQNLALLANQ--AR----LFDSTHYL 197 (380)
Q Consensus 145 ~~--~---~~--~~~al~~~G~~-----------~~~~~~~~~--~~-~~~~~~~~~L~~l~~~--v~----~~~~~~~~ 197 (380)
.. . .. ....+...|.. +...+.... +. ....++.+.+.++... +. +.+.++..
T Consensus 214 ~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~al~~~~~l~~~G~~~~~~~t~~~~~~~ 293 (535)
T 3omb_A 214 KKLEGSYFTWYSPMLLLNSTGIVTGFNKGVSEYGFYAKNGVVKSFLTSDEYKEVIKYYHKLISEGLIPAEWATKDDDAYN 293 (535)
T ss_dssp CCCCSSSCCTTCGGGGGGGGTCCCCTTSSGGGGTEEEETTEEEEGGGSHHHHHHHHHHHHHHHTTSSCTTGGGCCHHHHH
T ss_pred ccCCCcccchhhHHHHHHhhCCCcccccCCCCceEEecCCEEEecCCCHHHHHHHHHHHHHHHCCCCChhhhcCCHHHHH
Confidence 10 0 00 00122333432 100111110 01 1245566666666431 11 12223434
Q ss_pred H-HhHcC---CEEEEEechhcHHHHHHcCCCcEEE-ccCC--Cc-----------cceeeeEEEeCCCCCcccccCCCCC
Q 016927 198 K-AFGIG---DVWVAVGWSSDVLPAVKRMSNVAVV-VPKS--GA-----------SLWADLWAIPAASRLETKQIGGRVR 259 (380)
Q Consensus 198 ~-~~~~G---ev~~~~~~s~~~~~~~~~~~~i~~~-~P~e--G~-----------~~~~d~~~I~k~s~~~~~~~~~~~~ 259 (380)
. .+.+| +++|.+.|+...... ..+.++.++ +|.. |. .....+++|+++|+|++
T Consensus 294 ~~~~~~G~~a~~a~~~~w~~~~~~~-~~~~~~~~~p~p~~~~g~~~~~~~~~~~~~~~~~~~~I~~~sk~~e-------- 364 (535)
T 3omb_A 294 ADQISDGKTAKTGVVFGWSPSDNFG-KLKDQYIAMPVPSAPGVSPDQTVWDGSSSELSPAGLSISSHAANKD-------- 364 (535)
T ss_dssp HHHHTTSSSCCEEEEEESCHHHHHG-GGGGGEEECCCCBCTTCCGGGCCCCCCCSSEEEEEEEEBTTCTTHH--------
T ss_pred HHHhcCCCcceEEEEeecccccccC-CCcccEEEecCccCCCCCcccceeccccccccCCeEEEECCCCCHH--------
Confidence 4 34677 899998887543322 223455554 3432 22 23457899999999998
Q ss_pred CChHHHHHHHHHHhhHHhhchhh
Q 016927 260 GPSPLIHQWIEFCLQTARALPFK 282 (380)
Q Consensus 260 ~~~~~A~~fi~fllspe~~~~~~ 282 (380)
+|++||+|++++|.|..+.
T Consensus 365 ----~A~~fl~~l~s~e~q~~~~ 383 (535)
T 3omb_A 365 ----AALKLANLLYSEKYSVQQF 383 (535)
T ss_dssp ----HHHHHHHHHTSHHHHHHHH
T ss_pred ----HHHHHHHHhcCHHHHHHHh
Confidence 9999999999999998754
No 75
>3vlv_A ALGQ1; sugar binding protein, alginate; HET: MAW LGU; 1.50A {Sphingomonas SP} SCOP: c.94.1.1 PDB: 3vlu_A* 3vlw_A* 1y3n_A* 1y3p_A* 1y3q_A 1j1n_A* 1kwh_A
Probab=99.67 E-value=6.4e-17 Score=164.40 Aligned_cols=224 Identities=15% Similarity=0.159 Sum_probs=129.9
Q ss_pred CccEEE-eC-cHHHHHHHHcCcccccccCCCccc-cCCCChhh---HHHHhhhCCCccCCCCCEEEeec---ccceeEEE
Q 016927 41 AADLVS-VG-DSWLSFAIKKRLIEPIAGAEDQDW-FKCLSHKW---KVYLRRNDAGEIDPRGKIWAAPY---RWGTMVIA 111 (380)
Q Consensus 41 ~~Dvv~-~~-~~~~~~~~~~gll~pld~~~~~~~-~~~~~~~~---~~~~~~~~~~~~d~~g~~Y~vP~---~~~~~gi~ 111 (380)
.|||+. ++ ...+..+++.|+|.||+.. .+. .+++.+.. +.+.... ...+|+.||+|+ ...+.+++
T Consensus 67 ~PDi~~~~~~~~~~~~~~~~G~l~~L~d~--i~~~~~~~~~~~~~~p~~~~~~----~~~dGk~Y~lP~~~~~~~~~~~~ 140 (502)
T 3vlv_A 67 LPDIVGGDNLKDKFIRYGMEGAFIPLNKL--IDQNAPNLKAFFKTHPEVQRAI----TAPDGNIYYLPYVPDGLVSRGYF 140 (502)
T ss_dssp CCSEEEESSCHHHHHHHHHHTSBCCCHHH--HHHHCHHHHHHHHHCHHHHHHH----BCTTSCBCCEEEECCCSCCEEEE
T ss_pred CCeEEEecCCcHHHHHHHHCCCEEEcHHH--HHHhChHHHHHHHHChHHHHhc----cCCCCCEEEeccccCCCcCcceE
Confidence 599999 76 6789999999999999864 111 24444332 3333321 234599999999 56788999
Q ss_pred EeccccccCCCCCCCCHHHhcCc--cc-------cC---ceeeecChhHHHHHHHHHcCCC---------CCCCChhh--
Q 016927 112 YKKSKFRKHNLAPIEDWKDLWRP--EL-------AG---RISMVNSPREVIGSVLKYMGAS---------YNSNNIDL-- 168 (380)
Q Consensus 112 Yn~d~~~~~g~~~p~sW~dL~~~--~~-------~g---ki~~~~~~~~~~~~al~~~G~~---------~~~~~~~~-- 168 (380)
||+|+|+++|+++|+||++|.+. ++ .| .+.+.......+...+...|.. ....+...
T Consensus 141 ynkd~l~~~Gl~~P~T~del~~~~~~~k~~~p~g~G~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~g~~~~ 220 (502)
T 3vlv_A 141 IRQDWLDKLHLKTPQTVDELYTVLKAFKEKDPNGNGKADEIPFINRDPEEVFRLVNFWGARSTGSNTWMDFYVENGKIKH 220 (502)
T ss_dssp EEHHHHHHTTCCCCCBHHHHHHHHHHHHHSCTTCSSSCCCEEECCSCTTHHHHGGGGGTCCSCSSSSTTCCEEETTEEEC
T ss_pred EeHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCCCCCCcceeeeeccCCchHHHHHHHhCCCCcCCCCcceEEecCCEEEe
Confidence 99999999999999999999853 22 23 2444322222222222223321 11111111
Q ss_pred hhc-cchHHHHHHHHHHhhh--cc--ccc-chhHHHHhHcCC-EEEEEechhcHH---H-HHHcCCC--cEEEccC---C
Q 016927 169 QVA-GGKISVQQNLALLANQ--AR--LFD-STHYLKAFGIGD-VWVAVGWSSDVL---P-AVKRMSN--VAVVVPK---S 232 (380)
Q Consensus 169 ~~~-~~~~~~~~~L~~l~~~--v~--~~~-~~~~~~~~~~Ge-v~~~~~~s~~~~---~-~~~~~~~--i~~~~P~---e 232 (380)
.+. ....++.+++.+|... +. .+. ..+..+.+.+|. +.+...|..... . ..+..++ +..+.|. .
T Consensus 221 ~~~~~~~~~~l~~~~~l~~~G~i~~~~~t~~~~~~~~~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 300 (502)
T 3vlv_A 221 PFAEVAFKDGIKHVAQWYKEGLIDPEIFTRKARSREQTFGNNIGGMTHDWFASTALFNDALSKNIPGFKLVPMAPPINSK 300 (502)
T ss_dssp GGGSHHHHHHHHHHHHHHHTTCBCTTTTTCGGGHHHHHHHTTCEEEEEEEHHHHHTHHHHTTTTSTTCCEEEECCCBCTT
T ss_pred CCCCHHHHHHHHHHHHHHHCCCCChhhhcCChHHHHHHHcCCeEEEEeecccccchhhhhhhhcCCCcceEEecCccCCC
Confidence 011 1244556666666431 11 121 122334455555 444555643321 1 1222333 4433332 2
Q ss_pred Cc--------cceeeeEEEeCCCCCcccccCCCCCCChHHHHHHHHHHhhHHhhchhh
Q 016927 233 GA--------SLWADLWAIPAASRLETKQIGGRVRGPSPLIHQWIEFCLQTARALPFK 282 (380)
Q Consensus 233 G~--------~~~~d~~~I~k~s~~~~~~~~~~~~~~~~~A~~fi~fllspe~~~~~~ 282 (380)
|. .....+++|+++|+|++ +|++||+|++++|.|..+.
T Consensus 301 g~~~~~~~~~~~~~~~~~I~~~sk~~e------------~A~~fl~~l~s~e~~~l~~ 346 (502)
T 3vlv_A 301 GQRWEEDARQIPRPDGWAITATNKNPV------------ETIKLFDFYFGPKGRELSN 346 (502)
T ss_dssp SCCCBCCCCCSSCSCEEEEBTTCSCHH------------HHHHHHHHTTSHHHHHHHH
T ss_pred CccccccccCCCCCceEEEeCCCCCHH------------HHHHHHHHhcCHHHHHHHh
Confidence 31 23346899999999998 9999999999999887653
No 76
>3cg1_A UPF0100 protein PF0080; ABC transporter, binding protein, molybdate, tungstate, ligand, unknown function, transport protein; 1.60A {Pyrococcus furiosus} PDB: 3cg3_A
Probab=99.61 E-value=7.6e-15 Score=138.81 Aligned_cols=159 Identities=13% Similarity=0.191 Sum_probs=106.8
Q ss_pred EEeecccceeEEEEeccccccCCC-CCCCCHHHhc-CccccCceeeecChhHHHHH----HHHHcCCCCCCCChhhhhcc
Q 016927 99 WAAPYRWGTMVIAYKKSKFRKHNL-APIEDWKDLW-RPELAGRISMVNSPREVIGS----VLKYMGASYNSNNIDLQVAG 172 (380)
Q Consensus 99 Y~vP~~~~~~gi~Yn~d~~~~~g~-~~p~sW~dL~-~~~~~gki~~~~~~~~~~~~----al~~~G~~~~~~~~~~~~~~ 172 (380)
+.+|+.++.++|+||++.....++ .+|++|.||+ +|+ +||++.+......+. ++...+..... +
T Consensus 83 ~~~~~~~~~~vi~~~~~~~~~~~i~~~p~sw~dll~~p~--~~i~~~~p~~~~~G~~~~~~~~~~~~~~~~---~----- 152 (296)
T 3cg1_A 83 FYVLFATNEIVIAFTDKSRYVEEMKSNPDKWYEILARED--VRFGFSDPNQDPCGYRSLMVIKLADLYYGK---E----- 152 (296)
T ss_dssp CCEEEEECCEEEEECTTSTTHHHHHHCGGGHHHHHTSTT--CCEEEECTTTCHHHHHHHHHHHHHHHHHTS---C-----
T ss_pred cceecccccEEEEEcCCCchhcccCCCCCCHHHHhcCCC--cEEEeCCCCCCchhHHHHHHHHHHHHhcch---h-----
Confidence 568899999999999985311011 1579999988 564 689987743222221 12112110000 1
Q ss_pred chHHHHHHHHHH------------h-------h-hcccc-cchhHHHHhHcCCEEEEEechhcHHHHH------------
Q 016927 173 GKISVQQNLALL------------A-------N-QARLF-DSTHYLKAFGIGDVWVAVGWSSDVLPAV------------ 219 (380)
Q Consensus 173 ~~~~~~~~L~~l------------~-------~-~v~~~-~~~~~~~~~~~Gev~~~~~~s~~~~~~~------------ 219 (380)
.++.|... . + .+... ...+..+.+.+|++++++.|.+.+....
T Consensus 153 ----~~~~l~~~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~Ge~~~~i~~~s~a~~~~~~~~~~p~~~~~ 228 (296)
T 3cg1_A 153 ----IFKELIEENTNIYSNGTQIYAPKEITVNPGKIVIRPKETDLLGLVESGSIDYIFIYKSVAKQHNLSYITLPSEINL 228 (296)
T ss_dssp ----HHHHHTTTTBSCEEETTEEEECSSCCBCTTTEEEESSGGGGHHHHHHTSSSEEEEEHHHHHHTTCEEEECCTTTSS
T ss_pred ----HHHHHHhcccccccCccccccccccccccccceecCchHHHHHHHhCCCCCEEEEEhhHHHHcCCCeEecChhhcc
Confidence 12333211 0 1 11111 2457788999999999999999876532
Q ss_pred ------HcCCCcEEEccCCC----ccceeeeEEEeCCCCCcccccCCCCCCChHHHHHHHHHHhhHHhhchhhh
Q 016927 220 ------KRMSNVAVVVPKSG----ASLWADLWAIPAASRLETKQIGGRVRGPSPLIHQWIEFCLQTARALPFKQ 283 (380)
Q Consensus 220 ------~~~~~i~~~~P~eG----~~~~~d~~~I~k~s~~~~~~~~~~~~~~~~~A~~fi~fllspe~~~~~~~ 283 (380)
+.+.++++++|++| ...+...++|+++++|++ +|++||+|++|+|.|..+.+
T Consensus 229 ~~~~~~~~~~~v~~~~p~~g~~~~~~~~~~~~~i~k~a~~~~------------~A~~Fi~fl~s~e~q~~~~~ 290 (296)
T 3cg1_A 229 GDFSKEKFYGQISITLGSTGKTIKAKPIVYGVTVLKDAPNRE------------VAIEFLRYLLSENGKRIFEK 290 (296)
T ss_dssp CCGGGHHHHTTCEEEETTTCCEEECCCCEEEEEECTTCTTHH------------HHHHHHHHHHSHHHHHHHHH
T ss_pred ccccccccccceeEEecCCcccccCceeeeeEEEeCCCCCHH------------HHHHHHHHHhChHHHHHHHH
Confidence 23467999999998 556678999999999998 99999999999999988875
No 77
>3cfx_A UPF0100 protein MA_0280; ABC transporter, binding protein, molybdate, tungstate, LIGA unknown function, transport protein; 1.60A {Methanosarcina acetivorans}
Probab=99.49 E-value=9.2e-13 Score=124.67 Aligned_cols=154 Identities=18% Similarity=0.247 Sum_probs=100.7
Q ss_pred EEeecccceeEEEEeccccccCCCCCCCCHHHhc-CccccCceeeecChhHHHH----HHHHHcCCCCCCCChhhhhccc
Q 016927 99 WAAPYRWGTMVIAYKKSKFRKHNLAPIEDWKDLW-RPELAGRISMVNSPREVIG----SVLKYMGASYNSNNIDLQVAGG 173 (380)
Q Consensus 99 Y~vP~~~~~~gi~Yn~d~~~~~g~~~p~sW~dL~-~~~~~gki~~~~~~~~~~~----~al~~~G~~~~~~~~~~~~~~~ 173 (380)
+.+||.++.++|+||++.....++ +|++|.||+ +| ++||++.+......+ .++...|..++. ..
T Consensus 78 ~~~~~~~~~l~i~~~~~~~~~~~~-~~~~w~dll~~~--~~~I~~~~p~~~~~G~~~~~~l~~~~~~~~~--~~------ 146 (296)
T 3cfx_A 78 WYAAFARNQMILAYTNESKYGDEI-NTDNWYEILRRP--DVRYGFSNPNDDPAGYRSQMVTQLAESYYND--DM------ 146 (296)
T ss_dssp CEEEEEECCEEEEECTTSTTTTTC-CTTTHHHHHHST--TCCEEEECTTTCHHHHHHHHHHHHHHHHTTC--TT------
T ss_pred ceeeeEeeeEEEEEeCCCccccCC-CcccHHHHhCCC--CeEEEEeCCCCCCCcHHHHHHHHHHHHhhcC--cc------
Confidence 567889999999999997543222 578999955 66 478999874322222 222222322211 11
Q ss_pred hHHHHHHHHHH------------------------hhh---cccc-cchhHHHHhHcCCEEEEEechhcHHHHHHcCCCc
Q 016927 174 KISVQQNLALL------------------------ANQ---ARLF-DSTHYLKAFGIGDVWVAVGWSSDVLPAVKRMSNV 225 (380)
Q Consensus 174 ~~~~~~~L~~l------------------------~~~---v~~~-~~~~~~~~~~~Gev~~~~~~s~~~~~~~~~~~~i 225 (380)
.++.|... +++ +... ...+..+.+.+|++++++.|.+.+... ++
T Consensus 147 ---~~~~l~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~Ge~d~~i~~~s~a~~~-----~~ 218 (296)
T 3cfx_A 147 ---IYDDLMLANTGMTLTTEENGTALIHVPASEEISPNTSKIMLRSMEVELSSALETGEIDYLYIYRSVAEQH-----GF 218 (296)
T ss_dssp ---HHHHHTGGGSSCEEEECTTSCEEEECCCGGGCCCCTTTEEEESSGGGGHHHHHTTSCSEEEEEHHHHHHH-----TC
T ss_pred ---HHHHHhhcccccccccccCCcccccccccccccccccceeecccHHHHHHHHHcCCCCEEEeehhhHhhC-----CC
Confidence 12333211 111 1112 345778899999999999998877643 23
Q ss_pred EE-EccCCCc-------------------------cceeeeEEEeCCCCCcccccCCCCCCChHHHHHHHHHHhhHHhhc
Q 016927 226 AV-VVPKSGA-------------------------SLWADLWAIPAASRLETKQIGGRVRGPSPLIHQWIEFCLQTARAL 279 (380)
Q Consensus 226 ~~-~~P~eG~-------------------------~~~~d~~~I~k~s~~~~~~~~~~~~~~~~~A~~fi~fllspe~~~ 279 (380)
.+ .+|+++. ......++|+++++|++ +|++||+||+|+|.|.
T Consensus 219 ~~~~~P~~~~~~~~~~~~~y~~v~~~~~~g~~~~~~~i~~~~~i~k~a~~~~------------~A~~Fi~fllS~e~q~ 286 (296)
T 3cfx_A 219 EYVALPPAIDLSSLEYADNYSKVQVEMVNGEVVTGSPIVYGVTIPNNAENSE------------LATEFVALLLGETGQQ 286 (296)
T ss_dssp EEECCCTTTSSCCGGGHHHHTTEEEECTTSCEEECCCCEEEEECCTTCSCHH------------HHHHHHHHHHSHHHHH
T ss_pred CEEECChhhcccCccccccccceeeeccCCccccCCceEEEEEeecCCCCHH------------HHHHHHHHHhChHHHH
Confidence 43 3677752 22457899999999998 9999999999999998
Q ss_pred hhhh
Q 016927 280 PFKQ 283 (380)
Q Consensus 280 ~~~~ 283 (380)
.+.+
T Consensus 287 i~~~ 290 (296)
T 3cfx_A 287 IFIE 290 (296)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7764
No 78
>3cij_A UPF0100 protein AF_0094; archaeal periplasmic binding protein, unknown function, metal binding protein, transport protein; 1.07A {Archaeoglobus fulgidus} PDB: 2ons_A 2onk_E 2onr_A
Probab=99.47 E-value=1.4e-12 Score=123.32 Aligned_cols=154 Identities=12% Similarity=0.206 Sum_probs=101.2
Q ss_pred EEeecccceeEEEEeccccccCCCCCCCCHHHhc-CccccCceeeecChhHHHH----HHHHHcCCCCCCCChhhhhccc
Q 016927 99 WAAPYRWGTMVIAYKKSKFRKHNLAPIEDWKDLW-RPELAGRISMVNSPREVIG----SVLKYMGASYNSNNIDLQVAGG 173 (380)
Q Consensus 99 Y~vP~~~~~~gi~Yn~d~~~~~g~~~p~sW~dL~-~~~~~gki~~~~~~~~~~~----~al~~~G~~~~~~~~~~~~~~~ 173 (380)
+.+||.++.++|+||++.....++ +|++|.||+ ++ ++||++.+......+ .++...|..++. ..
T Consensus 78 ~~~~~~~~~lvl~~~~~~~~~~~i-~~~~w~dll~~~--~~~I~~~~p~~~~~G~~~~~~l~~~~~~~~~--~~------ 146 (295)
T 3cij_A 78 WTIMFAKNQIVLAYRNDSRYADEI-NSQNWYEILKRP--DVRFGFSNPNDDPCGYRSLMAIQLAELYYND--PT------ 146 (295)
T ss_dssp CCEEEEECCEEEEECTTSTTTTTC-CTTTHHHHHTST--TCCEEEECTTTCHHHHHHHHHHHHHHHHTTC--TT------
T ss_pred eeeEEEeeeEEEEEeCCCcccccc-CcccHHHHhcCC--CcEEEEeCCCcCCccHHHHHHHHHHHHhccC--Cc------
Confidence 457888999999999997643222 578999965 55 589999874322222 222233322221 11
Q ss_pred hHHHHHHHHHH-----------------------hh---hcccc-cchhHHHHhHcCCEEEEEechhcHHHHHHcCCCcE
Q 016927 174 KISVQQNLALL-----------------------AN---QARLF-DSTHYLKAFGIGDVWVAVGWSSDVLPAVKRMSNVA 226 (380)
Q Consensus 174 ~~~~~~~L~~l-----------------------~~---~v~~~-~~~~~~~~~~~Gev~~~~~~s~~~~~~~~~~~~i~ 226 (380)
.++.|... ++ .+... +..+..+.+.+|++++++.|.+.+... .+.
T Consensus 147 ---~~~~l~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~Ge~d~~i~~~s~a~~~-----~~~ 218 (295)
T 3cij_A 147 ---IFDELVAKNSNLRFSEDNGSYVLRMPSSERIEINKSKIMIRSMEMELIHLVESGELDYFFIYKSVAKQH-----GFN 218 (295)
T ss_dssp ---HHHHHTGGGBSCCEEEETTEEEEECCCGGGCCBCTTTEEEESSTHHHHHHHHTTSCSEEEEEHHHHHHT-----TCE
T ss_pred ---HHHHHhhccccccccccCCcccccccccccccccccceeecccHHHHHHHHhCCCCCEEEEEeehhhhC-----CCC
Confidence 12333211 11 11112 235778899999999999998877542 244
Q ss_pred E-EccCCCc-------------------------cceeeeEEEeCCCCCcccccCCCCCCChHHHHHHHHHHhhHHhhch
Q 016927 227 V-VVPKSGA-------------------------SLWADLWAIPAASRLETKQIGGRVRGPSPLIHQWIEFCLQTARALP 280 (380)
Q Consensus 227 ~-~~P~eG~-------------------------~~~~d~~~I~k~s~~~~~~~~~~~~~~~~~A~~fi~fllspe~~~~ 280 (380)
+ .+|+++. ......++|+++++|++ +|++||+||+|+|.|..
T Consensus 219 ~~~~P~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~i~~~~~i~k~a~~~~------------~A~~Fi~fl~S~e~q~i 286 (295)
T 3cij_A 219 FVELPVEIDLSSPDYAELYSKVKVVLANGKEVTGKPIVYGITIPKNAENRE------------LAVEFVKLVISEEGQEI 286 (295)
T ss_dssp EEECCTTTSSCCGGGHHHHTTEEEECTTSCEEECCCCEEEEECCTTCSCHH------------HHHHHHHHHHSHHHHHH
T ss_pred EEECchhhccCCccccccccceEEeccCCccccCCceEEEEEeecCCCCHH------------HHHHHHHHHhChhHHHH
Confidence 3 5788763 12356899999999998 99999999999999987
Q ss_pred hhh
Q 016927 281 FKQ 283 (380)
Q Consensus 281 ~~~ 283 (380)
+.+
T Consensus 287 ~~~ 289 (295)
T 3cij_A 287 LRE 289 (295)
T ss_dssp HHH
T ss_pred HHH
Confidence 764
No 79
>3r26_A Molybdate-binding periplasmic protein; protein binding; 1.70A {Escherichia coli} SCOP: c.94.1.1 PDB: 3axf_A 1amf_A 1wod_A
Probab=99.40 E-value=1.1e-11 Score=113.70 Aligned_cols=142 Identities=15% Similarity=0.205 Sum_probs=100.8
Q ss_pred eecccceeEEEEeccc-cccCCCCCCCCHHHhcCccccCceeeecChhHHHHHH----HHHcCCCCCCCChhhhhccchH
Q 016927 101 APYRWGTMVIAYKKSK-FRKHNLAPIEDWKDLWRPELAGRISMVNSPREVIGSV----LKYMGASYNSNNIDLQVAGGKI 175 (380)
Q Consensus 101 vP~~~~~~gi~Yn~d~-~~~~g~~~p~sW~dL~~~~~~gki~~~~~~~~~~~~a----l~~~G~~~~~~~~~~~~~~~~~ 175 (380)
.||..+.++|+||++. .+..++..+++|.+|+++ +||++.+......+.+ |...|.
T Consensus 82 ~~~~~~~lvl~~~~~~~~~~~~i~~~~~l~~l~~~---~~iai~~p~~~p~G~~a~~~l~~~g~---------------- 142 (237)
T 3r26_A 82 QTLLGNSLVVVAPKASVQKDFTIDSKTNWTSLLNG---GRLAVGDPEHVPAGIYAKEALQKLGA---------------- 142 (237)
T ss_dssp EEEEEECEEEEEESSCCCCCCCCSTTCCHHHHHTT---CCEEEECTTTCHHHHHHHHHHHHTTC----------------
T ss_pred eeeEcceEEEEEeCCCCcccccccchHhHHHhcCC---CeEEEeCCCCCChHHHHHHHHHHcCC----------------
Confidence 4667788999999985 332234457899998873 7899987433223322 222221
Q ss_pred HHHHHHHHHhhhccccc-chhHHHHhHcCCEEEEEechhcHHHHHHcCCCcEE--EccCCCccceeeeEEEeCCCCCccc
Q 016927 176 SVQQNLALLANQARLFD-STHYLKAFGIGDVWVAVGWSSDVLPAVKRMSNVAV--VVPKSGASLWADLWAIPAASRLETK 252 (380)
Q Consensus 176 ~~~~~L~~l~~~v~~~~-~~~~~~~~~~Gev~~~~~~s~~~~~~~~~~~~i~~--~~P~eG~~~~~d~~~I~k~s~~~~~ 252 (380)
...+++++.... ..+..+.+.+|++++++.|.+++.. .+++.+ .+|+++.......++|+++++| +
T Consensus 143 -----~~~l~~~~~~~~~~~~~~~~v~~Ge~d~gi~~~s~a~~----~~~~~~v~~~P~~~~~~~~~~~ai~k~~~~-~- 211 (237)
T 3r26_A 143 -----WDTLSPKLAPAEDVRGALALVERNEAPLGIVYGSDAVA----SKGVKVVATFPEDSHKKVEYPVAVVEGHNN-A- 211 (237)
T ss_dssp -----HHHHGGGEEEESSHHHHHHHHHTTSSSEEEEEHHHHHH----CSSEEEEEECCGGGSCCEEEEEEEBTTCCS-H-
T ss_pred -----HHHhhhcEEecCCHHHHHHHHHcCCCCEEEEEeccccc----CCCCeEEEECCcccCCeeeeeEEEEcCCCC-H-
Confidence 123455553222 3467789999999999999887653 345555 5899888778888999999999 5
Q ss_pred ccCCCCCCChHHHHHHHHHHhhHHhhchhhh
Q 016927 253 QIGGRVRGPSPLIHQWIEFCLQTARALPFKQ 283 (380)
Q Consensus 253 ~~~~~~~~~~~~A~~fi~fllspe~~~~~~~ 283 (380)
+|.+|++|++|++.|..+.+
T Consensus 212 -----------~A~~Fi~fl~S~eaq~i~~~ 231 (237)
T 3r26_A 212 -----------TVKAFYDYLKGPQAAEIFKR 231 (237)
T ss_dssp -----------HHHHHHHHHTSHHHHHHHHH
T ss_pred -----------HHHHHHHHHcCHHHHHHHHH
Confidence 89999999999999988875
No 80
>3cfz_A UPF0100 protein MJ1186; ABC transporter, binding protein, molybdate, tungstate, ligand, unknown function, transport protein; 1.70A {Methanocaldococcus jannaschii}
Probab=99.32 E-value=3.4e-11 Score=113.55 Aligned_cols=152 Identities=17% Similarity=0.258 Sum_probs=96.5
Q ss_pred EEeecccceeEEEEeccccccCCCCCCCCHHHhc-CccccCceeeecChhHHHH----HHHHHcCCCCCCCChhhhhccc
Q 016927 99 WAAPYRWGTMVIAYKKSKFRKHNLAPIEDWKDLW-RPELAGRISMVNSPREVIG----SVLKYMGASYNSNNIDLQVAGG 173 (380)
Q Consensus 99 Y~vP~~~~~~gi~Yn~d~~~~~g~~~p~sW~dL~-~~~~~gki~~~~~~~~~~~----~al~~~G~~~~~~~~~~~~~~~ 173 (380)
+.+||.++.++|+||++.....++ +|++|.||+ +| ++||++.+......+ .++...|..++ ++.
T Consensus 78 ~~~~~~~~~lvi~~~~~~~~~~~i-~~~~w~dll~~p--~~~I~~~dp~~~~~G~~~~~~l~~~~~~~~--~~~------ 146 (292)
T 3cfz_A 78 WYVMFARNEIVLAYTDKSKYKDEI-NSTNWYKILQRP--DVKIGFSNPNDDPCGYRTQMVLQLAELYYK--DPT------ 146 (292)
T ss_dssp CCEEEEECCEEEEECTTSTTTTTC-CTTTHHHHTTST--TCCEEEECTTTCHHHHHHHHHHHHHHHHHT--CTT------
T ss_pred ceeeeEeccEEEEEcCCCccccCC-CcccHHHHhcCC--CcEEEeCCCCCCCCcHHHHHHHHHHHHhcc--CCc------
Confidence 447888899999999987543222 468999965 55 578999874322222 22222222111 111
Q ss_pred hHHHHHHHHHH---------------------hh---hcccc-cchhHHHHhHcCCEEEEEechhcHHHHHHcCCCcEE-
Q 016927 174 KISVQQNLALL---------------------AN---QARLF-DSTHYLKAFGIGDVWVAVGWSSDVLPAVKRMSNVAV- 227 (380)
Q Consensus 174 ~~~~~~~L~~l---------------------~~---~v~~~-~~~~~~~~~~~Gev~~~~~~s~~~~~~~~~~~~i~~- 227 (380)
.++.|... ++ ++... ...+..+.+.+|++++++.|.+.+.. . ++.+
T Consensus 147 ---~~~~l~~~~~~l~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~~Ge~d~gi~~~s~a~~---~--~~~~~ 218 (292)
T 3cfz_A 147 ---IYDNLVLKHSNIKVEENNGTYLILVPKELDVDTNKLFVRSKETDLLAPLEAGAFDYLFIYKSVANQ---H--HLKYI 218 (292)
T ss_dssp ---HHHHHTGGGBSCEEEEETTEEEEEECSSCCBCTTTEEEESSGGGGHHHHHTTSSSEEEEEHHHHHH---T--TCEEE
T ss_pred ---HHHHHhcccccccccccCCcccccccccccccccceeecccHHHHHHHHHCCCCCEEEEEehhhhh---C--CCCEE
Confidence 12333211 00 11111 23467789999999999999887654 1 3444
Q ss_pred EccCCCc--------------------------cceeeeEEEeCCCCCcccccCCCCCCChHHHHHHHHHHhhHHhhchh
Q 016927 228 VVPKSGA--------------------------SLWADLWAIPAASRLETKQIGGRVRGPSPLIHQWIEFCLQTARALPF 281 (380)
Q Consensus 228 ~~P~eG~--------------------------~~~~d~~~I~k~s~~~~~~~~~~~~~~~~~A~~fi~fllspe~~~~~ 281 (380)
.+|+++. ..+..+++|+++++|++ +|.+||+||+ +.|..+
T Consensus 219 ~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~k~a~~~~------------~A~~Fi~fl~--e~q~i~ 284 (292)
T 3cfz_A 219 ELPKEINLGYYEYADTYKKVALKIIAKNKTINAKPIVYGMTVPTNAPHKK------------EAIEFVKFVL--GHPEVL 284 (292)
T ss_dssp CCCTTTSSCCGGGHHHHTTEEEEEGGGTEEEECCCCEEEEECCTTCTTHH------------HHHHHHHHHH--HCTHHH
T ss_pred ECChhhcccCccccchhhceeeeeccccccccCCceeEEEEeecCCCCHH------------HHHHHHHHHH--HHHHHH
Confidence 3676642 22567899999999998 9999999999 777766
Q ss_pred hh
Q 016927 282 KQ 283 (380)
Q Consensus 282 ~~ 283 (380)
.+
T Consensus 285 ~~ 286 (292)
T 3cfz_A 285 EN 286 (292)
T ss_dssp HT
T ss_pred HH
Confidence 54
No 81
>2hxw_A Major antigenic peptide PEB3; periplasmic binding protein, N-glycosylation, structural genomics; HET: FLC; 1.60A {Campylobacter jejuni} PDB: 3fjm_A 3fjg_A 3fir_A* 3fj7_A*
Probab=99.30 E-value=2.1e-11 Score=110.69 Aligned_cols=139 Identities=14% Similarity=0.140 Sum_probs=91.3
Q ss_pred cccceeEEEEeccccccCCCCCCCCHHHhcCccccCceeeecCh-------hHHHHHHHHHcCCCCCCCChhhhhccchH
Q 016927 103 YRWGTMVIAYKKSKFRKHNLAPIEDWKDLWRPELAGRISMVNSP-------REVIGSVLKYMGASYNSNNIDLQVAGGKI 175 (380)
Q Consensus 103 ~~~~~~gi~Yn~d~~~~~g~~~p~sW~dL~~~~~~gki~~~~~~-------~~~~~~al~~~G~~~~~~~~~~~~~~~~~ 175 (380)
+..+..+++||++. .. .|+||+||++|++ ||++.+.. ...+...+...| .
T Consensus 78 ~~~~~~~l~~~~~~-~~----~~~sw~dL~~~~~--~i~~~d~~~~~~~~~~g~~~~~~~~~~--------~-------- 134 (237)
T 2hxw_A 78 LYFREAIILTQKGN-PL----KIKGLKDLANKKV--RIVVPEGAGKSNTSGTGVWEDMIGRTQ--------D-------- 134 (237)
T ss_dssp EEEEEEEEEESTTC-TT----CCCSHHHHHHSCC--CEEECCCTTSSCCTTTTHHHHHHHTTC--------C--------
T ss_pred cccCceEEEEeCCC-CC----CCCCHHHhcCCCc--EEEecCCCCCCcccchHHHHHHHHHcc--------C--------
Confidence 44567899999984 22 5799999999866 68887641 111111111111 1
Q ss_pred HHHHHHHHHhhhccccc--chhHHHHhHcCCEEEEEechhcHHHHHHcCCCcEEEccCCCcc-ceee-eEEEeCCCCCcc
Q 016927 176 SVQQNLALLANQARLFD--STHYLKAFGIGDVWVAVGWSSDVLPAVKRMSNVAVVVPKSGAS-LWAD-LWAIPAASRLET 251 (380)
Q Consensus 176 ~~~~~L~~l~~~v~~~~--~~~~~~~~~~Gev~~~~~~s~~~~~~~~~~~~i~~~~P~eG~~-~~~d-~~~I~k~s~~~~ 251 (380)
.+.+.++++++..+. ..+..+.+.+|++++++.|.+.+.. +.+...++|.+|.. .+.+ .++|++++ ++
T Consensus 135 --~~~~~~l~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~i~~~~--~~ 206 (237)
T 2hxw_A 135 --IKTIQNFRNNIVAFVPNSGSARKLFAQDQADAWITWIDWSKS----NPDIGTAVAIEKDLVVYRTFNVIAKEGA--SK 206 (237)
T ss_dssp --HHHHHHHHHTEEEECCCCTTC--CTTTTTCSEEEEEHHHHHH----STTSSEEEECCTTTCCEEEEEEEECTTC--CH
T ss_pred --HHHHHHHhhceEEEcCCHHHHHHHHHcCCeeEEEEechhhhc----CCCceEEEecCCceeEEeeeeEEEccCC--hH
Confidence 244566778775443 2345566889999999999886542 22444556655543 3433 78899988 66
Q ss_pred cccCCCCCCChHHHHHHHHHHhhHHhhchhhhh
Q 016927 252 KQIGGRVRGPSPLIHQWIEFCLQTARALPFKQE 284 (380)
Q Consensus 252 ~~~~~~~~~~~~~A~~fi~fllspe~~~~~~~~ 284 (380)
+|++||+|++|+|.|+.+.+.
T Consensus 207 ------------~A~~Fi~fl~s~e~q~~~~~~ 227 (237)
T 2hxw_A 207 ------------ETQDFIAYLSSKEAKEIFKKY 227 (237)
T ss_dssp ------------HHHHHHHHTTSHHHHHHHHHT
T ss_pred ------------HHHHHHHHHcCHHHHHHHHHh
Confidence 899999999999999988763
No 82
>3gzg_A Molybdate-binding periplasmic protein; permease; molybdate complex, mutant K127S, metal binding protein; 1.55A {Xanthomonas axonopodis PV} PDB: 2h5y_A
Probab=99.22 E-value=2.2e-10 Score=106.20 Aligned_cols=140 Identities=16% Similarity=0.135 Sum_probs=95.3
Q ss_pred eecccceeEEEEecccccc-CCCCCCCC--HHHhcCccccCceeeecChhHHHHHH----HHHcCCCCCCCChhhhhccc
Q 016927 101 APYRWGTMVIAYKKSKFRK-HNLAPIED--WKDLWRPELAGRISMVNSPREVIGSV----LKYMGASYNSNNIDLQVAGG 173 (380)
Q Consensus 101 vP~~~~~~gi~Yn~d~~~~-~g~~~p~s--W~dL~~~~~~gki~~~~~~~~~~~~a----l~~~G~~~~~~~~~~~~~~~ 173 (380)
.++..+.++|+||++.... . .+++ |.++..+ .+||++.|......+.+ |...|.
T Consensus 98 ~~~a~~~lvl~~~~~~~~~~~---~i~~~dl~~l~~~--~~~iai~dP~~~p~G~~a~~~l~~~g~-------------- 158 (253)
T 3gzg_A 98 HNLLGNTLVLVAPASSKLRVD---PRAPGAIAKALGE--NGRLAVGQTASVPAGSYAAAALRKLGQ-------------- 158 (253)
T ss_dssp EEEEEECEEEEEETTCCCCCC---TTSTTHHHHHTTT--TCCEEEECTTTSHHHHHHHHHHHHTTC--------------
T ss_pred eeEEeeEEEEEEECCCCcccC---CCCHHHHHHhhcC--CCEEEEeCCCCCchHHHHHHHHHHcCc--------------
Confidence 4566778899999986421 1 3455 6665443 47899987422223322 222221
Q ss_pred hHHHHHHHHHHhhhccccc-chhHHHHhHcCCEEEEEechhcHHHHHHcCCCcEEE--ccCCCccceeeeEEEeCCCCCc
Q 016927 174 KISVQQNLALLANQARLFD-STHYLKAFGIGDVWVAVGWSSDVLPAVKRMSNVAVV--VPKSGASLWADLWAIPAASRLE 250 (380)
Q Consensus 174 ~~~~~~~L~~l~~~v~~~~-~~~~~~~~~~Gev~~~~~~s~~~~~~~~~~~~i~~~--~P~eG~~~~~d~~~I~k~s~~~ 250 (380)
...+++++.... ..+..+.+.+|++++++.|..++.. .+++.++ +|+++.......++|.+++ ++
T Consensus 159 -------~~~l~~~~v~~~~~~~~~~~v~~Gead~giv~~s~a~~----~~~v~~v~~~P~~~~~~i~~~~ai~k~~-~~ 226 (253)
T 3gzg_A 159 -------WDSVSNRLAESESVRAALMLVSRGEAPLGIVYGSDARA----DAKVRVVATFPDDSHDAIVYPVAALKNS-NN 226 (253)
T ss_dssp -------HHHHTTSEEEESSHHHHHHHHHTTSSSEEEEEHHHHHH----CTTEEEEEECCGGGSCCEEEEEEECTTC-CC
T ss_pred -------HHHHhhceeecCCHHHHHHHHHcCCCCEEEEEhhcccc----CCCceEEEECCcccCceeEEEEEEECCC-Ch
Confidence 123445552222 2467788999999999999887652 3456654 8998887777889999998 77
Q ss_pred ccccCCCCCCChHHHHHHHHHHhhHHhhchhhh
Q 016927 251 TKQIGGRVRGPSPLIHQWIEFCLQTARALPFKQ 283 (380)
Q Consensus 251 ~~~~~~~~~~~~~~A~~fi~fllspe~~~~~~~ 283 (380)
+ +|.+|++|++|++.|..+.+
T Consensus 227 ~------------~A~~Fi~fl~S~eaq~i~~~ 247 (253)
T 3gzg_A 227 P------------ATAAFVSWLGSKPAKAIFAR 247 (253)
T ss_dssp T------------THHHHHHHTTSHHHHHHHHH
T ss_pred H------------HHHHHHHHHcCHHHHHHHHH
Confidence 7 89999999999999998875
No 83
>1atg_A MODA, periplasmic molybdate-binding protein; tungstate, ABC transporter; 1.20A {Azotobacter vinelandii} SCOP: c.94.1.1
Probab=99.22 E-value=2.1e-10 Score=102.25 Aligned_cols=152 Identities=13% Similarity=0.053 Sum_probs=99.8
Q ss_pred EeecccceeEEEEeccccccCCCCCCCCHHHhcCccccCceeeecChhHHH----HHHHHHcCCCCCCCChhhhhccchH
Q 016927 100 AAPYRWGTMVIAYKKSKFRKHNLAPIEDWKDLWRPELAGRISMVNSPREVI----GSVLKYMGASYNSNNIDLQVAGGKI 175 (380)
Q Consensus 100 ~vP~~~~~~gi~Yn~d~~~~~g~~~p~sW~dL~~~~~~gki~~~~~~~~~~----~~al~~~G~~~~~~~~~~~~~~~~~ 175 (380)
..|+.++.++++||++.. .+.||+||.++.+ |++.+.+...... ..++...|. .
T Consensus 74 ~~~~~~~~~vlv~~~~~~------~~~~~~dL~~~~~-~~i~~~~~~~~~~~~~~~~~l~~~g~--------------~- 131 (231)
T 1atg_A 74 RFTYAIGKLVLWSAKPGL------VDNQGKVLAGNGW-RHIAISNPQIAPYGLAGTQVLTHLGL--------------L- 131 (231)
T ss_dssp CEEEEECCEEEEESSTTT------SCTTSGGGGSSSC-SCEEEECTTTCHHHHHHHHHHHHTTC--------------H-
T ss_pred eeEeeeeeEEEEEcCCCC------CCcchhhhccCCC-CEEEecCCCCCchhHHHHHHHHHCCC--------------c-
Confidence 357777888999999863 3458999998765 6888876321112 222223332 0
Q ss_pred HHHHHHHHHhhhcccccc-hhHHHHhHcCCEEEEEechhcHHHHHHcCCCcEEEccCCCccceeeeEEEeCCCCCccccc
Q 016927 176 SVQQNLALLANQARLFDS-THYLKAFGIGDVWVAVGWSSDVLPAVKRMSNVAVVVPKSGASLWADLWAIPAASRLETKQI 254 (380)
Q Consensus 176 ~~~~~L~~l~~~v~~~~~-~~~~~~~~~Gev~~~~~~s~~~~~~~~~~~~i~~~~P~eG~~~~~d~~~I~k~s~~~~~~~ 254 (380)
..+ .+++++....+ ....+++++|++++++.|.+.+.........+.+.+|.+|.......++|++++++++
T Consensus 132 ---~~~-~~~~~~~~~~~~~~~~~~v~~G~~~i~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~i~~~~~~~~--- 204 (231)
T 1atg_A 132 ---DKL-TAQERIVEANSVGQAHSQTASGAADLGFVALAQIIQAAAKIPGSHWFPPANYYEPIVQQAVITKSTAEKA--- 204 (231)
T ss_dssp ---HHH-HHTTCEEEESSHHHHHHHHHTTSSSEEEEEGGGTCCTTSCCSSEEECCCGGGSCCCEEEEEEBTTCSCHH---
T ss_pred ---ccc-cccceEEecCCHHHHHHHHHcCCCCEEEEEHHHhhhccccccCeEEEeCcccCccceEeEEEecCCCChH---
Confidence 000 14444433333 4677899999988888887764321111224566788877655566789999999987
Q ss_pred CCCCCCChHHHHHHHHHHhhHHhhchhhhhhcCCCCC
Q 016927 255 GGRVRGPSPLIHQWIEFCLQTARALPFKQEVIPGASP 291 (380)
Q Consensus 255 ~~~~~~~~~~A~~fi~fllspe~~~~~~~~~~~~~~p 291 (380)
+|++||+|+++++.|..+.+ .+|.+|
T Consensus 205 ---------~a~~fi~~l~s~~~q~~~~~--~g~~~~ 230 (231)
T 1atg_A 205 ---------NAEQFMSWMKGPKAVAIIKA--AGYVLP 230 (231)
T ss_dssp ---------HHHHHHHHTTSHHHHHHHHH--TTCBCC
T ss_pred ---------HHHHHHHHHcCHHHHHHHHH--hCCCCC
Confidence 99999999999999988765 355443
No 84
>3k6v_A Solute-binding protein MA_0280; MODA, molybdate, periplasmic BIN protein, ABC transporter, transport protein, ligand, metal- protein; HET: CIT; 1.69A {Methanosarcina acetivorans} PDB: 3k6u_A* 3k6w_A 3k6x_A
Probab=98.53 E-value=5.7e-06 Score=80.14 Aligned_cols=73 Identities=14% Similarity=0.089 Sum_probs=56.1
Q ss_pred hhHHHHhHcCCEEEEEechhcHHHHHHcCCCcEEE-ccCCCcc-------------------------ceeeeEEEeCCC
Q 016927 194 THYLKAFGIGDVWVAVGWSSDVLPAVKRMSNVAVV-VPKSGAS-------------------------LWADLWAIPAAS 247 (380)
Q Consensus 194 ~~~~~~~~~Gev~~~~~~s~~~~~~~~~~~~i~~~-~P~eG~~-------------------------~~~d~~~I~k~s 247 (380)
.+....+.+|++++++.|..++... .+.++ +|.+-.. --...++|++++
T Consensus 230 ~~~l~~v~~G~aDag~vy~S~a~~~-----~l~~v~lP~~~n~~~~~~~~~y~~v~v~~~~~~~~~~~Pi~y~~ai~k~a 304 (354)
T 3k6v_A 230 VELSSALETGEIDYLYIYRSVAEQH-----GFEYVALPPAIDLSSLEYADNYSKVQVEMVNGEVVTGSPIVYGVTIPNNA 304 (354)
T ss_dssp HHHHHHHHHTSCSEEEEEHHHHHHH-----TCEEEECCTTTSSCCGGGHHHHTTEEEECTTSCEEECCCCEEEEECCTTC
T ss_pred HHHHHHHHcCCCCEEEEEhhhhhhc-----CCcEEeCChhhccccccccccccceeeeccccccccCCceeEeEEeecCC
Confidence 4677889999999999998887653 25554 5643110 013468999999
Q ss_pred CCcccccCCCCCCChHHHHHHHHHHhhHHhhchhhh
Q 016927 248 RLETKQIGGRVRGPSPLIHQWIEFCLQTARALPFKQ 283 (380)
Q Consensus 248 ~~~~~~~~~~~~~~~~~A~~fi~fllspe~~~~~~~ 283 (380)
+|++ +|.+|++|++|++.|..+.+
T Consensus 305 ~~~~------------~A~~Fi~fL~S~eaq~i~~~ 328 (354)
T 3k6v_A 305 ENSE------------LATEFVALLLGETGQQIFIE 328 (354)
T ss_dssp TTHH------------HHHHHHHHHHSHHHHHHHHH
T ss_pred CCHH------------HHHHHHHHHcCHHHHHHHHH
Confidence 9998 99999999999999988865
No 85
>3muq_A Uncharacterized conserved protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.05A {Vibrio parahaemolyticus}
Probab=92.66 E-value=0.16 Score=45.90 Aligned_cols=66 Identities=5% Similarity=-0.019 Sum_probs=45.1
Q ss_pred EechhcHHHHHHcCCCcEEEccCCCccceeeeEEEeCCCCCcccccCCCCCCChHHHHHHHHHHhhHHhhchhhh
Q 016927 209 VGWSSDVLPAVKRMSNVAVVVPKSGASLWADLWAIPAASRLETKQIGGRVRGPSPLIHQWIEFCLQTARALPFKQ 283 (380)
Q Consensus 209 ~~~s~~~~~~~~~~~~i~~~~P~eG~~~~~d~~~I~k~s~~~~~~~~~~~~~~~~~A~~fi~fllspe~~~~~~~ 283 (380)
++-.+..+..+++. ++.+.++.++..+...++.+.+.++++. -..+.|.+|++|++|++.|..+..
T Consensus 169 l~dr~t~l~~~~~~-~l~i~~~gd~~l~n~y~v~~v~p~~~~~--------~~~~~a~~f~~wl~s~~gQ~~i~~ 234 (237)
T 3muq_A 169 MSDRGTWLAYQNKL-DLEILFQGDEKLFNPYQVILVNPERYPT--------INYQGAKAFSDWLVNPRGQELING 234 (237)
T ss_dssp EEEHHHHHHHGGGC-SCEEEECCCGGGEEEEEEEEECTTTCTT--------SCHHHHHHHHHHHHSHHHHHHHHH
T ss_pred EEechHHhhccccC-CeEEEEcCCCceeeeeEEEEECcccCCc--------cCHHHHHHHHHHHcCHHHHHHHHh
Confidence 33345555555443 7888888777777777766666666431 013499999999999999987653
No 86
>3ksx_A Nitrate transport protein; SSUA, alkanesulfonate-binding protein, periplasmic-binding P transport protein; HET: MPO; 1.70A {Xanthomonas axonopodis PV} PDB: 3e4r_A* 3ksj_A*
Probab=87.70 E-value=16 Score=33.28 Aligned_cols=122 Identities=15% Similarity=0.144 Sum_probs=66.4
Q ss_pred ceeEEEEeccccccCCCCCCCCHHHhcCccccCc-eeeecCh-hH-HHHHHHHHcCCCCCCCChhhhhccchHHHHHHHH
Q 016927 106 GTMVIAYKKSKFRKHNLAPIEDWKDLWRPELAGR-ISMVNSP-RE-VIGSVLKYMGASYNSNNIDLQVAGGKISVQQNLA 182 (380)
Q Consensus 106 ~~~gi~Yn~d~~~~~g~~~p~sW~dL~~~~~~gk-i~~~~~~-~~-~~~~al~~~G~~~~~~~~~~~~~~~~~~~~~~L~ 182 (380)
+..+++.+++. +.+|++|| +|| |++.... .. .+..++...|.++.+.
T Consensus 111 ~~~~lvv~~~s-------~I~s~~DL-----kGk~i~v~~gs~~~~~~~~~l~~~Gl~~~~v------------------ 160 (324)
T 3ksx_A 111 KAETILVPSKS-------ALRTVADL-----KGKRIAFQKGSSAHNLLLRVLAKSGLSMRDI------------------ 160 (324)
T ss_dssp GGEEEEEETTC-------SCCSGGGG-----TTCEEEECTTSHHHHHHHHHHHHTTCCGGGS------------------
T ss_pred CceEEEEeCCC-------CCCCHHHh-----CCCEEEecCCChHHHHHHHHHHHcCCCHHHe------------------
Confidence 45678888763 57888887 454 5554322 22 2223344556543110
Q ss_pred HHhhhcccccchhHHHHhHcCCEEEEEechhcHHHHHHcCCCcEEEccCCCccceeeeEEEeCC--CCCcccccCCCCCC
Q 016927 183 LLANQARLFDSTHYLKAFGIGDVWVAVGWSSDVLPAVKRMSNVAVVVPKSGASLWADLWAIPAA--SRLETKQIGGRVRG 260 (380)
Q Consensus 183 ~l~~~v~~~~~~~~~~~~~~Gev~~~~~~s~~~~~~~~~~~~i~~~~P~eG~~~~~d~~~I~k~--s~~~~~~~~~~~~~ 260 (380)
.+..+...+...+|.+|+++.++.|.........++ ...++....+.......+++.+. ..|++
T Consensus 161 ----~~v~~~~~~~~~al~~G~vDa~~~~~p~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~p~--------- 226 (324)
T 3ksx_A 161 ----TPLYLSPANARAAFAAGQVDAWAIWDPWYSALTLDG-SARLLANGEGLGLTGGFFLSSRRYATAWGP--------- 226 (324)
T ss_dssp ----EEEECCHHHHHHHHHTTCCSEEEEETTHHHHHHHTT-SEEEEEESTTSCCCCEEEEEEHHHHHHTHH---------
T ss_pred ----EEEeCCHHHHHHHHHcCCCCEEEEccHHHHHHHhcC-CcEEEecccccCCCccEEEECHHHHHHCHH---------
Confidence 011123356678899999999998887766555443 34443322222222344555443 23565
Q ss_pred ChHHHHHHHHHHhh
Q 016927 261 PSPLIHQWIEFCLQ 274 (380)
Q Consensus 261 ~~~~A~~fi~flls 274 (380)
.+.+|++-+..
T Consensus 227 ---~~~~~~~a~~~ 237 (324)
T 3ksx_A 227 ---FVQQVMGTLNQ 237 (324)
T ss_dssp ---HHHHHHHHHHH
T ss_pred ---HHHHHHHHHHH
Confidence 78888876553
No 87
>3lr1_A Tungstate ABC transporter, periplasmic tungstate- binding protein; the tungstate ABC transporter, structural genomics, PSI, MCSG; 1.80A {Geobacter sulfurreducens}
Probab=83.49 E-value=1.2 Score=39.95 Aligned_cols=63 Identities=3% Similarity=-0.069 Sum_probs=35.8
Q ss_pred hhcHHHHHHcCCCcEEEccCCCccceeeeEEEeCCCCCcccccCCCCCCChHHHHHHHHHHhhHHhhchhh
Q 016927 212 SSDVLPAVKRMSNVAVVVPKSGASLWADLWAIPAASRLETKQIGGRVRGPSPLIHQWIEFCLQTARALPFK 282 (380)
Q Consensus 212 s~~~~~~~~~~~~i~~~~P~eG~~~~~d~~~I~k~s~~~~~~~~~~~~~~~~~A~~fi~fllspe~~~~~~ 282 (380)
.+..+..+....++.+.+..+...+...++.+....+++. -..+.|.+|++||+|++.|..+.
T Consensus 172 r~t~l~~~~~~~~l~i~~~~d~~l~n~y~~~~v~p~~~~~--------~~~~~a~~f~~~l~s~~~q~~i~ 234 (236)
T 3lr1_A 172 RGTYNAFKGAKTDLVILFQGEKGLFNPYGIMAVNPKKFPH--------VKYDLAMKLIDYVTGPEGLKIIS 234 (236)
T ss_dssp HHHHHHHBTTTBCCEEEEEC---CCEEEEEEEECTTTCTT--------SCHHHHHHHHHHHTSHHHHHHHH
T ss_pred chhhhhcccCCCCeEEEEcCCcceeeceeEEEECcccCCc--------cCHHHHHHHHHHhcCHHHHHHHh
Confidence 4444444423346776665444555554444444343331 01349999999999999997664
No 88
>4gd5_A Phosphate ABC transporter, phosphate-binding PROT; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE; 1.70A {Clostridium perfringens}
Probab=79.76 E-value=1.7 Score=39.49 Aligned_cols=33 Identities=15% Similarity=0.152 Sum_probs=26.6
Q ss_pred eeEEEeCCCCCcccccCCCCCCChHHHHHHHHHHhhHHhhchhhh
Q 016927 239 DLWAIPAASRLETKQIGGRVRGPSPLIHQWIEFCLQTARALPFKQ 283 (380)
Q Consensus 239 d~~~I~k~s~~~~~~~~~~~~~~~~~A~~fi~fllspe~~~~~~~ 283 (380)
..+.|.+++++.+ +|.+|++|++|++.|..+.+
T Consensus 240 p~~~v~~~~~~~~------------~ak~F~~f~~S~egQ~ii~~ 272 (279)
T 4gd5_A 240 PFLAVYKEENLTE------------SGKSFIDFILSEEGQDIVAK 272 (279)
T ss_dssp EEEEEECTTTCCH------------HHHHHHHHHHSHHHHHHHHH
T ss_pred EEEEEEcCCCCCH------------HHHHHHHHHcCHHHHHHHHH
Confidence 3455677777766 89999999999999987765
No 89
>3kn3_A Putative periplasmic protein; alpha-beta structure, periplasmic binding protein fold, STRU genomics, PSI-2, protein structure initiative; HET: GSH CIT; 2.41A {Wolinella succinogenes}
Probab=78.65 E-value=4.4 Score=36.47 Aligned_cols=73 Identities=8% Similarity=-0.019 Sum_probs=40.2
Q ss_pred CCEEEEEechhcHHHHH---HcCCCcEEEccCCCccceeeeEEEeCCCCCcccccCCCCCCChHHHHHHHHHHhhHHhhc
Q 016927 203 GDVWVAVGWSSDVLPAV---KRMSNVAVVVPKSGASLWADLWAIPAASRLETKQIGGRVRGPSPLIHQWIEFCLQTARAL 279 (380)
Q Consensus 203 Gev~~~~~~s~~~~~~~---~~~~~i~~~~P~eG~~~~~d~~~I~k~s~~~~~~~~~~~~~~~~~A~~fi~fllspe~~~ 279 (380)
..-+..++-.+.++... +...++.+.+-.+...+...++.+..-.+++. -..+.|.+|++||+|++.|.
T Consensus 164 ~~~~Y~l~dr~t~l~~~~~~~~~~~l~i~~~gd~~l~n~y~~~~v~p~~~~~--------~~~~~a~~f~~~l~s~~~q~ 235 (242)
T 3kn3_A 164 EQKGLTLTDRGTFIKYESNHKGKPPMVIVLEGDNTLKNFYSIMAVNPKRCEK--------ADYKGAKQFIDWIVSEKMQA 235 (242)
T ss_dssp HTTCEEEEEHHHHHHHHHHSCSSCSCEEEECCCGGGCCEEEEEEECTTTCTT--------SCHHHHHHHHHHHHSHHHHH
T ss_pred HcCCEEEeeehhhhhcchhhcCCCCeEEEEcCCcceEeeeEEEEECcccCCc--------cCHHHHHHHHHHHcCHHHHH
Confidence 33333444455555552 23446776664333344444433333233221 01349999999999999998
Q ss_pred hhhh
Q 016927 280 PFKQ 283 (380)
Q Consensus 280 ~~~~ 283 (380)
.+..
T Consensus 236 ~i~~ 239 (242)
T 3kn3_A 236 EIAN 239 (242)
T ss_dssp HHHT
T ss_pred HHHh
Confidence 7653
No 90
>3qsl_A Putative exported protein; unknown, structural genomics, PSI-biology, midwest center FO structural genomics, MCSG, unknown function; HET: MSE CIT; 2.00A {Bordetella bronchiseptica}
Probab=71.85 E-value=57 Score=29.37 Aligned_cols=130 Identities=15% Similarity=0.093 Sum_probs=71.4
Q ss_pred EeecccceeEEEEeccccccCCCCCCCCHHHhcCccccCc-eeeec-C-hhH-HHHHHHHHcCCCCCCCChhhhhccchH
Q 016927 100 AAPYRWGTMVIAYKKSKFRKHNLAPIEDWKDLWRPELAGR-ISMVN-S-PRE-VIGSVLKYMGASYNSNNIDLQVAGGKI 175 (380)
Q Consensus 100 ~vP~~~~~~gi~Yn~d~~~~~g~~~p~sW~dL~~~~~~gk-i~~~~-~-~~~-~~~~al~~~G~~~~~~~~~~~~~~~~~ 175 (380)
+.++.....+++++++.-. +.+|++|| +|+ |++.. . ... .+...+...|.++.+.
T Consensus 110 ~~~~~~~~~~~~v~~~~~~-----~i~s~~DL-----~Gk~i~~~~~gs~~~~~~~~~l~~~G~~~~~v----------- 168 (346)
T 3qsl_A 110 ALQGRAPMIGVGVSKKNLP-----GYKGPADL-----KGRKIGVTAPGSSTNMVVNFFLAKHGLKASDV----------- 168 (346)
T ss_dssp EESBSSCCEEEEEETTTCT-----TCCSGGGG-----TTCEEEESSTTSHHHHHHHHHHHHTTCCGGGS-----------
T ss_pred EecccCCCcEEEEecCccc-----CCCChHHc-----CCCEEEECCCCcHHHHHHHHHHHHcCCCHHHe-----------
Confidence 3344434567788876421 56889888 454 66652 2 122 2223344556542100
Q ss_pred HHHHHHHHHhhhccccc-chhHHHHhHcCCEEEEEechhcHHHHHHcCCCcEEEccCC---------CccceeeeEEEeC
Q 016927 176 SVQQNLALLANQARLFD-STHYLKAFGIGDVWVAVGWSSDVLPAVKRMSNVAVVVPKS---------GASLWADLWAIPA 245 (380)
Q Consensus 176 ~~~~~L~~l~~~v~~~~-~~~~~~~~~~Gev~~~~~~s~~~~~~~~~~~~i~~~~P~e---------G~~~~~d~~~I~k 245 (380)
.+..+. ..+..++|.+|+++.++.|......+..++ ...++.... |...-...+++.+
T Consensus 169 -----------~~~~~~~~~~~~~al~~G~vDa~~~~~p~~~~~~~~g-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 236 (346)
T 3qsl_A 169 -----------SFIGVGAGAGAVTALRSGQIDAISNTDPVVSMLETSG-DIQIIVDTRTLKDTKEIFGGNMPAGCLYAPQ 236 (346)
T ss_dssp -----------EEEECCSSHHHHHHHHHTSCSEEEEETTHHHHHHHTT-CEEEEEECSSHHHHHHHHSSCCCCEEEEEEH
T ss_pred -----------EEEecCCcHHHHHHHHcCCccEEEecchhHHHHHhCC-CeEEEEecccccchhhhcCCCCceEEEEECH
Confidence 011232 346778999999999999888776666555 444433211 1122233455554
Q ss_pred C--CCCcccccCCCCCCChHHHHHHHHHHhh
Q 016927 246 A--SRLETKQIGGRVRGPSPLIHQWIEFCLQ 274 (380)
Q Consensus 246 ~--s~~~~~~~~~~~~~~~~~A~~fi~flls 274 (380)
. .+|++ ...+|++-+.+
T Consensus 237 ~~~~~~p~------------~~~~~~~a~~~ 255 (346)
T 3qsl_A 237 AFVDANPN------------TAQALTNAIVR 255 (346)
T ss_dssp HHHHHCHH------------HHHHHHHHHHH
T ss_pred HHHHHCHH------------HHHHHHHHHHH
Confidence 4 24666 88888886553
No 91
>2v3u_A Glutamate receptor delta-2 subunit; postsynaptic membrane, ionotropic glutamate receptors, transmembrane, membrane protein; 1.74A {Rattus norvegicus} PDB: 2v3t_A
Probab=65.00 E-value=66 Score=27.49 Aligned_cols=155 Identities=10% Similarity=-0.036 Sum_probs=74.2
Q ss_pred EEEeecccceeEEEEeccccccCCCCCCCCHHHhcCccccCceeeec-Ch-hHHHHHHHHHcCCCCCCCChhhhhccchH
Q 016927 98 IWAAPYRWGTMVIAYKKSKFRKHNLAPIEDWKDLWRPELAGRISMVN-SP-REVIGSVLKYMGASYNSNNIDLQVAGGKI 175 (380)
Q Consensus 98 ~Y~vP~~~~~~gi~Yn~d~~~~~g~~~p~sW~dL~~~~~~gki~~~~-~~-~~~~~~al~~~G~~~~~~~~~~~~~~~~~ 175 (380)
.++.||.....+++.+++. +.++++||- ++|++.. .. ...+...+...|.......+. ..
T Consensus 97 ~fs~p~~~~~~~~~~~~~~-------~i~~~~dL~-----~~v~v~~g~~~~~~~~~~l~~~~~~~~~~~~~------~~ 158 (265)
T 2v3u_A 97 DFTTRYMDYSVGVLLRRGT-------SIQSLQDLS-----KQTDIPYGTVLDSAVYQHVRMKGLNPFERDSM------YS 158 (265)
T ss_dssp EECSCSEEECEEEEEETTC-------CCCSHHHHH-----TCSSSCEECBTTSHHHHHHHHHHTCTTCSCTH------HH
T ss_pred cccceeeeccEEEEEECCC-------Cccchhhhh-----hhhcEEEEEeccHHHHHHHHhcCCCcccccHH------HH
Confidence 4677888778888888763 578999985 2343321 11 112222334445443222221 11
Q ss_pred HHHHHHHHHhhhccccc-chhHHHHhHcCCEEEEEechhcHHHHHHcCC--CcEEEccCCCccceeeeEEEeCCCCCccc
Q 016927 176 SVQQNLALLANQARLFD-STHYLKAFGIGDVWVAVGWSSDVLPAVKRMS--NVAVVVPKSGASLWADLWAIPAASRLETK 252 (380)
Q Consensus 176 ~~~~~L~~l~~~v~~~~-~~~~~~~~~~Gev~~~~~~s~~~~~~~~~~~--~i~~~~P~eG~~~~~d~~~I~k~s~~~~~ 252 (380)
+.++.+......+..+. ..+..+++.+|++ .++.....+.....+.+ ++..+-+.. ....-+++++++++-.+
T Consensus 159 ~~~~~i~~~~~~~~~~~~~~~~~~~l~~G~~-a~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~k~~~l~~- 234 (265)
T 2v3u_A 159 QMWRMINRSNGSENNVLESQAGIQKVKYGNY-AFVWDAAVLEYVAINDPDCSFYTVGNTV--ADRGYGIALQHGSPYRD- 234 (265)
T ss_dssp HHHHHHCC-----CCBSSHHHHHHHHHHSSC-EEEEEHHHHHHHHHHCTTCCEEEEC-----CCEEECCEEETTCTTHH-
T ss_pred HHHHHHHhhcCcccccCCHHHHHHHHHcCCE-EEEEcchHHHHHHhcCCCccEEEecccc--CCcceEEEEeCCCccHH-
Confidence 12222211112223343 3577889999999 55544333333333332 344432111 11223678898876433
Q ss_pred ccCCCCCCChHHHHHHHHHHhhHHhhchhhhhh
Q 016927 253 QIGGRVRGPSPLIHQWIEFCLQTARALPFKQEV 285 (380)
Q Consensus 253 ~~~~~~~~~~~~A~~fi~fllspe~~~~~~~~~ 285 (380)
.--+.|.-+.......++.+.+
T Consensus 235 -----------~in~~l~~l~~~g~~~~i~~kw 256 (265)
T 2v3u_A 235 -----------VFSQRILELQQSGDMDILKHKW 256 (265)
T ss_dssp -----------HHHHHHHHHHHHTHHHHHHHHH
T ss_pred -----------HHHHHHHHHhhCChHHHHHhhc
Confidence 5555565555443334444444
No 92
>4h1x_A PBP 2, phosphate-binding protein PSTS 2; periplasmic binding protein, PF12849 family; HET: MSE CIT; 1.77A {Streptococcus pneumoniae}
Probab=52.62 E-value=14 Score=33.54 Aligned_cols=23 Identities=13% Similarity=0.023 Sum_probs=19.0
Q ss_pred HHHHHHHHHhhHHhhchhhhhhcCC
Q 016927 264 LIHQWIEFCLQTARALPFKQEVIPG 288 (380)
Q Consensus 264 ~A~~fi~fllspe~~~~~~~~~~~~ 288 (380)
++.+||+|++|++.|....+ .||
T Consensus 117 ~vk~Fl~f~lS~~GQ~iv~~--~Gy 139 (265)
T 4h1x_A 117 LGQDFISFIHSKQGQQVVTD--NKF 139 (265)
T ss_dssp HHHHHHHHHHBHHHHHHHHH--TTC
T ss_pred HHHHHHHHHhhcccceeeec--CCc
Confidence 79999999999999976654 455
No 93
>3n5l_A Binding protein component of ABC phosphonate TRAN; structural genomics, joint center for structural genomics; HET: UNL; 1.97A {Pseudomonas aeruginosa}
Probab=50.49 E-value=1.4e+02 Score=26.89 Aligned_cols=189 Identities=11% Similarity=-0.033 Sum_probs=0.0
Q ss_pred ceEEEEEEcccHHHHHHhcccchhHhhcCCCCCCCccEEEeCcHHHHHHHHcCcccccccCCCccccCCCChhhHHHHhh
Q 016927 7 RLKFQMNLCASIDGIVNNLSVPFNKVKAKSAPYMAADLVSVGDSWLSFAIKKRLIEPIAGAEDQDWFKCLSHKWKVYLRR 86 (380)
Q Consensus 7 ~v~v~~~~~gs~~~~~~~~~~~~~kl~ag~~~~~~~Dvv~~~~~~~~~~~~~gll~pld~~~~~~~~~~~~~~~~~~~~~ 86 (380)
+++|+.....++.++... |++|. +|+++.+...+....+..-+.++..
T Consensus 35 G~~ve~~~~~~~~~~i~a-------l~~G~-----vDi~~~~~~~~~~~~~~~~~~~~a~-------------------- 82 (310)
T 3n5l_A 35 GYQVKAFFAPDYAGIIQG-------MRFDK-----VDIAWYGNKAAMEAVDRAHGEIFAQ-------------------- 82 (310)
T ss_dssp SSEEEEECCSSHHHHHHH-------HHTTS-----CSEEECCHHHHHHHHHHSCEEEEEE--------------------
T ss_pred CCCEEEEeCCCHHHHHHH-------HHcCC-----CCEEEECcHHHHHHHHhcCCeEEEE--------------------
Q ss_pred hCCCccCCCCCEEEeecccceeEEEEeccccccCCCCCCCCHHHhcCccccCceeeecChhHHHHHHHHHcCCCCCCCCh
Q 016927 87 NDAGEIDPRGKIWAAPYRWGTMVIAYKKSKFRKHNLAPIEDWKDLWRPELAGRISMVNSPREVIGSVLKYMGASYNSNNI 166 (380)
Q Consensus 87 ~~~~~~d~~g~~Y~vP~~~~~~gi~Yn~d~~~~~g~~~p~sW~dL~~~~~~gki~~~~~~~~~~~~al~~~G~~~~~~~~ 166 (380)
.+..+|..| ...+|+.+++. +.+|++||.+..-..+|++.......-..+..+.=..-...++
T Consensus 83 ----~~~~~g~~~------~~~~lvv~~ds-------~i~sl~DL~~~~kgk~ia~~~~gs~~~~l~~~~~l~~~~Gi~~ 145 (310)
T 3n5l_A 83 ----TVAASGAPG------YWSLLIANKDS-------KIDSLEDMLANAKSLTFGNGDPNSTSGYLVPGYYVFAKNNVDP 145 (310)
T ss_dssp ----EEETTCCSE------EEEEEEEETTC-------SCCSHHHHHHTGGGCEEEECCTTCTTTTHHHHHHTTTTTTCCH
T ss_pred ----EeccCCCcc------eEEEEEEECCC-------CCCCHHHHhhhcCCCEEEecCCCccHhHHHHHHHHHHHcCCCh
Q ss_pred hhhhccchHHHHHHHHHHhhhcccccchhHHHHhHcCCEEEEEechhcHHHHHHcC----CCcEEEccCCCccceeeeEE
Q 016927 167 DLQVAGGKISVQQNLALLANQARLFDSTHYLKAFGIGDVWVAVGWSSDVLPAVKRM----SNVAVVVPKSGASLWADLWA 242 (380)
Q Consensus 167 ~~~~~~~~~~~~~~L~~l~~~v~~~~~~~~~~~~~~Gev~~~~~~s~~~~~~~~~~----~~i~~~~P~eG~~~~~d~~~ 242 (380)
+ ..-..+..-...+....+.+|++++++.+...+..+.+.+ .+++.+.......-+ .++
T Consensus 146 ~---------------~~~~~v~~g~~~~~~~al~~G~vDa~~~~~~~~~~~~~~~~~~~~~lrvl~~s~~~p~~--~i~ 208 (310)
T 3n5l_A 146 V---------------KAFKRTLNSSHEVNALAVANKQVDVATFNTEGMERLELTQPEKARQLKVIWKSPLIPGD--PLV 208 (310)
T ss_dssp H---------------HHSSEEEECCHHHHHHHHHTTSSSEEEEEHHHHHHHHHHCHHHHTTEEEEEEEEEEECC--EEE
T ss_pred H---------------HhccccccCCHHHHHHHHHcCCccEEEecchhHHHHHHhCccchhCEEEEEECCCCCCC--cEE
Q ss_pred EeCCCCCcccccCCCCCCChHHHHHHHHHHhh
Q 016927 243 IPAASRLETKQIGGRVRGPSPLIHQWIEFCLQ 274 (380)
Q Consensus 243 I~k~s~~~~~~~~~~~~~~~~~A~~fi~flls 274 (380)
++++.+.. ...++-+.+.+
T Consensus 209 ~~~~~~~~-------------l~~~l~~al~~ 227 (310)
T 3n5l_A 209 WRNNLSDE-------------QKNKLRDFFFK 227 (310)
T ss_dssp EETTSCHH-------------HHHHHHHHHHH
T ss_pred EECCCCHH-------------HHHHHHHHHHh
No 94
>3g3k_A Glutamate receptor, ionotropic kainate 2; membrane protein, cell junction, cell membrane, glycoprotein, ION transport, ionic channel, membrane; HET: GLU IPA; 1.24A {Rattus norvegicus} PDB: 3g3j_A* 3g3i_A* 2i0b_A* 3g3h_A* 3g3g_A* 3g3f_A* 1s7y_A* 1s9t_A* 1sd3_A* 1tt1_A* 1s50_A* 2xxr_A* 2xxt_A* 2xxx_A* 2xxw_A* 2xxy_A* 2xxu_A* 2xxv_A* 3qxm_A* 2i0c_A* ...
Probab=49.29 E-value=1.2e+02 Score=25.72 Aligned_cols=125 Identities=14% Similarity=0.065 Sum_probs=64.7
Q ss_pred EEEeecccceeEEEEeccccccCCCCCCCCHHHhcCccccCceeeecChhHHHHHHHHHcCCCCCCCChhhhhccchHHH
Q 016927 98 IWAAPYRWGTMVIAYKKSKFRKHNLAPIEDWKDLWRPELAGRISMVNSPREVIGSVLKYMGASYNSNNIDLQVAGGKISV 177 (380)
Q Consensus 98 ~Y~vP~~~~~~gi~Yn~d~~~~~g~~~p~sW~dL~~~~~~gki~~~~~~~~~~~~al~~~G~~~~~~~~~~~~~~~~~~~ 177 (380)
.|+.||.....+++++++. +.++++||-... .-+++..... .....+...+. .. ....
T Consensus 101 ~fs~py~~~~~~~~~~~~~-------~i~~~~dL~g~~-~~~ig~~~~~--~~~~~~~~~~~------~~------~~~~ 158 (259)
T 3g3k_A 101 DFSKPFMTLGISILYRKGT-------PIDSADDLAKQT-KIEYGAVEDG--ATMTFFKRSKI------ST------YDKM 158 (259)
T ss_dssp EECSCSEEECEEEEEESSS-------SCCSHHHHHTCS-SSEEEEETTS--HHHHHHHHCCS------HH------HHHH
T ss_pred eeeeeeeeCCEEEEEeCCc-------cccCHHHhccCC-CceEEEecCc--HHHHHHhhccc------hh------HHHH
Confidence 4678998888899999863 568999986421 1124433321 11122222211 11 1122
Q ss_pred HHHHHHHhhhccccc-chhHHHHhHcCCEEEEEechhcHHHHHHcCCCcEEEccCCCccceeeeEEEeCCCC
Q 016927 178 QQNLALLANQARLFD-STHYLKAFGIGDVWVAVGWSSDVLPAVKRMSNVAVVVPKSGASLWADLWAIPAASR 248 (380)
Q Consensus 178 ~~~L~~l~~~v~~~~-~~~~~~~~~~Gev~~~~~~s~~~~~~~~~~~~i~~~~P~eG~~~~~d~~~I~k~s~ 248 (380)
++.+..-. .+..+. ..+..+++.+|+ ++.+.....+....++..++..+-+.- ....-+++++|+++
T Consensus 159 ~~~~~~~~-~~~~~~~~~~~~~~l~~g~-da~i~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~~a~~k~~~ 226 (259)
T 3g3k_A 159 WAFMSSRR-QSVLVKSNEEGIQRVLTSD-YAFLMESTTIEFVTQRNCNLTQIGGLI--DSKGYGVGTPMGSP 226 (259)
T ss_dssp HHHHHHTH-HHHEESSHHHHHHHHHHSS-EEEEEEHHHHHHHHHHCTTEEEESSCS--SCEEECCEEETTCT
T ss_pred HHHHHhcC-CCcccCCHHHHHHHHHhCC-eEEEechHHHHHHhcCCceEEEecccc--eeeeEEEEECCCCc
Confidence 22222111 122333 356778999999 666654444444444456666543211 11233688998865
No 95
>3ix1_A N-formyl-4-amino-5-aminomethyl-2-methylpyrimidine protein; periplasmic N-formyl-4-amino-5-aminomethyl-2-methylpyrimidin protein; HET: NFM; 2.40A {Bacillus halodurans c-125}
Probab=44.64 E-value=1.6e+02 Score=25.85 Aligned_cols=128 Identities=13% Similarity=0.133 Sum_probs=67.8
Q ss_pred EeecccceeEEEEeccccccCCCCCCCCHHHhcCccccCc-eeeecChh-H-HHHHHHHHcCCCCCCCChhhhhccchHH
Q 016927 100 AAPYRWGTMVIAYKKSKFRKHNLAPIEDWKDLWRPELAGR-ISMVNSPR-E-VIGSVLKYMGASYNSNNIDLQVAGGKIS 176 (380)
Q Consensus 100 ~vP~~~~~~gi~Yn~d~~~~~g~~~p~sW~dL~~~~~~gk-i~~~~~~~-~-~~~~al~~~G~~~~~~~~~~~~~~~~~~ 176 (380)
+.++..+..+++.+++. +.+|++|| +|| |++..... . .+...+...|.++.+. .
T Consensus 80 ~~~~~~~~~~l~~~~~s-------~i~s~~DL-----~Gk~i~~~~~~~~~~~~~~~l~~~Gl~~~~v----~------- 136 (302)
T 3ix1_A 80 ASVVRSPLNHVMFLAEQ-------DFDSPADL-----VGLTVGYPGIPVNEPILKTMVEAAGGDYEQV----H------- 136 (302)
T ss_dssp EEEECSCCEEEEEEGGG-------CCSSGGGG-----TTSEEEECSCTTHHHHHHHHHHHTTCCGGGC----E-------
T ss_pred EEEeccCCEEEEEECCC-------CCCChHHc-----CCCEEEeCCCcchHHHHHHHHHHcCCCHHHe----E-------
Confidence 33444456788888762 57888887 454 66654322 2 2233344556542210 0
Q ss_pred HHHHHHHHhhhcccccchhHHHHhHcCCEEEEEe--chhcHHHHHHcCCCcEEEccC-CCc-cceeeeEEEeCC--CCCc
Q 016927 177 VQQNLALLANQARLFDSTHYLKAFGIGDVWVAVG--WSSDVLPAVKRMSNVAVVVPK-SGA-SLWADLWAIPAA--SRLE 250 (380)
Q Consensus 177 ~~~~L~~l~~~v~~~~~~~~~~~~~~Gev~~~~~--~s~~~~~~~~~~~~i~~~~P~-eG~-~~~~d~~~I~k~--s~~~ 250 (380)
+ + .. ..+....+.+|+++.++. .......+...+.++.+..+. .|. ......+++.+. .+|+
T Consensus 137 -------~---~-~~-~~~~~~al~~G~vDa~~~~~~~~~~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p 204 (302)
T 3ix1_A 137 -------L---M-DV-GFELGASIVSGRADAVVGTYINHEYPVLKHEGHDISYFNPVDYGVPEYDELVLISNEAYVEESG 204 (302)
T ss_dssp -------E---E-EC-TTCHHHHHHHSSSSEEEEEETTTHHHHHHHTTCCEEEECGGGTTCCCCCSEEEEEEHHHHHHCH
T ss_pred -------E---E-ec-CccHHHHHhCCCCCEEEEeeecchHHHHHhcCCCceEeCHHHcCCCCCcccEEEECHHHHHHCH
Confidence 0 0 11 123456788899887763 344445555666666554432 233 222344555554 2366
Q ss_pred ccccCCCCCCChHHHHHHHHHHhh
Q 016927 251 TKQIGGRVRGPSPLIHQWIEFCLQ 274 (380)
Q Consensus 251 ~~~~~~~~~~~~~~A~~fi~flls 274 (380)
+ .+.+|++-+..
T Consensus 205 ~------------~v~~~~~a~~~ 216 (302)
T 3ix1_A 205 E------------VLAAFWRAALK 216 (302)
T ss_dssp H------------HHHHHHHHHHH
T ss_pred H------------HHHHHHHHHHH
Confidence 6 88888876554
No 96
>3cvg_A Putative metal binding protein; PSI-II, NYSGXRC, periplasmic, structural GENO protein structure initiative; 1.97A {Coccidioides immitis}
Probab=43.96 E-value=22 Score=32.24 Aligned_cols=36 Identities=6% Similarity=0.087 Sum_probs=28.3
Q ss_pred ceeeeEEEeCCCCCcccccCCCCCCChHHHHHHHHHHhhHH-hhchhhh
Q 016927 236 LWADLWAIPAASRLETKQIGGRVRGPSPLIHQWIEFCLQTA-RALPFKQ 283 (380)
Q Consensus 236 ~~~d~~~I~k~s~~~~~~~~~~~~~~~~~A~~fi~fllspe-~~~~~~~ 283 (380)
.+.-.+++.++.+++. +|.+|++|+.+++ .|..+.+
T Consensus 234 ~r~~~l~~~~~~~~s~------------aa~~Fi~~l~s~e~gq~i~~~ 270 (294)
T 3cvg_A 234 LNPAHLLVGARAKNAE------------MAKEFAKWLVSKEGGQKVIEG 270 (294)
T ss_dssp EEEEEEEEBSSCSSHH------------HHHHHHHHHHSTTTHHHHHHT
T ss_pred eeEEEEEEeCCCCCHH------------HHHHHHHHHcCcHHHHHHHHH
Confidence 3444566778877776 8999999999999 8877765
No 97
>2x26_A Periplasmic aliphatic sulphonates-binding protein; transport protein; 1.75A {Escherichia coli}
Probab=43.81 E-value=70 Score=28.41 Aligned_cols=68 Identities=13% Similarity=0.101 Sum_probs=39.8
Q ss_pred hhHHHHhHcCCEEEEEechhcHHHHHHcCCCcEEEccCCCccceeeeEEEeCC--CCCcccccCCCCCCChHHHHHHHHH
Q 016927 194 THYLKAFGIGDVWVAVGWSSDVLPAVKRMSNVAVVVPKSGASLWADLWAIPAA--SRLETKQIGGRVRGPSPLIHQWIEF 271 (380)
Q Consensus 194 ~~~~~~~~~Gev~~~~~~s~~~~~~~~~~~~i~~~~P~eG~~~~~d~~~I~k~--s~~~~~~~~~~~~~~~~~A~~fi~f 271 (380)
.+...++.+|++++++.|.........++ .+.++....+.......+++.+. ..|++ .+.+|++-
T Consensus 142 ~~~~~al~~G~vDa~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~p~------------~~~~~~~a 208 (308)
T 2x26_A 142 ADARAAFQQGNVDAWAIWDPYYSAALLQG-GVRVLKDGTDLNQTGSFYLAARPYAEKNGA------------FIQGVLAT 208 (308)
T ss_dssp HHHHHHHHTTSSSEEEEETTHHHHHHHHS-SEEEEEESTTSCCCCEEEEEEHHHHHHTHH------------HHHHHHHH
T ss_pred HHHHHHHHcCCCCEEEecchhHHHHHhcC-CcEEEecCCCcCCcceEEEEcHHHHHHCHH------------HHHHHHHH
Confidence 45667899999999988876665544443 45544332232222233444432 23565 78888886
Q ss_pred Hhh
Q 016927 272 CLQ 274 (380)
Q Consensus 272 lls 274 (380)
+.+
T Consensus 209 l~~ 211 (308)
T 2x26_A 209 FSE 211 (308)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 98
>4ecf_A ABC-type phosphate transport system, periplasmic; ABC transporter, phosphate transport receptor; HET: MSE; 1.55A {Lactobacillus brevis}
Probab=39.60 E-value=32 Score=30.66 Aligned_cols=25 Identities=12% Similarity=0.155 Sum_probs=19.7
Q ss_pred HHHHHHHHHhhHHhhchhhhhhcCCC
Q 016927 264 LIHQWIEFCLQTARALPFKQEVIPGA 289 (380)
Q Consensus 264 ~A~~fi~fllspe~~~~~~~~~~~~~ 289 (380)
++.+|++|+++++.|..+.++ .||.
T Consensus 219 ~~~~F~~~~~s~~gq~~~~~~-~G~~ 243 (264)
T 4ecf_A 219 LTKAFITYVQSPAIQNTLVRQ-LGYL 243 (264)
T ss_dssp HHHHHHHHHHSHHHHTTHHHH-TTCB
T ss_pred HHHHHHHHHhCchhHHHHHHH-CCCe
Confidence 899999999999988655555 4553
No 99
>3k4u_A Binding component of ABC transporter; structural genomics, protein structure INI NEW YORK structural genomix research consortium, nysgxrc; HET: LYS; 2.62A {Wolinella succinogenes} SCOP: c.94.1.0
Probab=39.33 E-value=1.7e+02 Score=24.47 Aligned_cols=110 Identities=14% Similarity=0.060 Sum_probs=62.1
Q ss_pred EEEeecccceeEEEEeccccccCCCCCCCCHHHhcCccccC-ceeeecChhHHHHHHHHHcCCCCCCCChhhhhccchHH
Q 016927 98 IWAAPYRWGTMVIAYKKSKFRKHNLAPIEDWKDLWRPELAG-RISMVNSPREVIGSVLKYMGASYNSNNIDLQVAGGKIS 176 (380)
Q Consensus 98 ~Y~vP~~~~~~gi~Yn~d~~~~~g~~~p~sW~dL~~~~~~g-ki~~~~~~~~~~~~al~~~G~~~~~~~~~~~~~~~~~~ 176 (380)
.|+.||.....+++++++.-. ..++++||.+ +| +|++..+... ...+.
T Consensus 83 ~~s~p~~~~~~~~~~~~~~~~-----~i~~~~dL~~---~g~~i~v~~g~~~--~~~l~--------------------- 131 (245)
T 3k4u_A 83 NFVEPYIVVGQSLLVKKGLEK-----GVKSYKDLDK---PELTLVTKFGVSA--EYAAK--------------------- 131 (245)
T ss_dssp EECSCSEEECEEEEEETTTTT-----TCCSGGGGCC---SSCEEEEETTSHH--HHHHH---------------------
T ss_pred CcchhhheeceEEEEECCccc-----ccCCHHHhcc---CCcEEEEeCCcHH--HHHHH---------------------
Confidence 467788888889999988522 5788998864 23 4666543221 11111
Q ss_pred HHHHHHHHhh--hccccc-chhHHHHhHcCCEEEEEechhcHHHHHHcCC--CcEEEccCCCccceeeeEEEeCC
Q 016927 177 VQQNLALLAN--QARLFD-STHYLKAFGIGDVWVAVGWSSDVLPAVKRMS--NVAVVVPKSGASLWADLWAIPAA 246 (380)
Q Consensus 177 ~~~~L~~l~~--~v~~~~-~~~~~~~~~~Gev~~~~~~s~~~~~~~~~~~--~i~~~~P~eG~~~~~d~~~I~k~ 246 (380)
...+ .+..+. ..+..+++.+|++++++.+...+.....+.. .+.. ++..-. ...-+++++++
T Consensus 132 ------~~~~~~~~~~~~~~~~~~~~L~~GrvDa~i~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~k~ 198 (245)
T 3k4u_A 132 ------RLFKNAKLKTYDTEAEAVQEVLNGKADMFIFDLPFNVAFMAQKGQGYLVH-LDTSLT-YEPLGWAIKKG 198 (245)
T ss_dssp ------HHCSSSEEEEESSHHHHHHHHHSSSSEEEEEEHHHHHHHHHHTTTTTEEE-ECCCCS-CEEECCEECTT
T ss_pred ------hhCCcCCEEEeCCHHHHHHHHHcCCCcEEEEcHHHHHHHHhcCCccceee-cCCCcc-cccEEEEEcCC
Confidence 1111 122232 3466788999999999988766655433332 3333 222111 22335778776
No 100
>3uif_A Sulfonate ABC transporter, periplasmic sulfonate- protein SSUA; structural genomics; 2.60A {Methylobacillus flagellatus}
Probab=37.43 E-value=94 Score=28.38 Aligned_cols=90 Identities=17% Similarity=0.121 Sum_probs=50.1
Q ss_pred EEEeecccceeEEEEeccccccCCCCCCCCHHHhcCccccCc-eeeecC-hhH-HHHHHHHHcCCCCCCCChhhhhccch
Q 016927 98 IWAAPYRWGTMVIAYKKSKFRKHNLAPIEDWKDLWRPELAGR-ISMVNS-PRE-VIGSVLKYMGASYNSNNIDLQVAGGK 174 (380)
Q Consensus 98 ~Y~vP~~~~~~gi~Yn~d~~~~~g~~~p~sW~dL~~~~~~gk-i~~~~~-~~~-~~~~al~~~G~~~~~~~~~~~~~~~~ 174 (380)
..+.++..+..+++.+++. +.+|++|| +|| |++... ... .+..++...|.++.+.
T Consensus 91 ~v~~~~~~~~~~lvv~~~s-------~i~s~~DL-----kGk~I~v~~gs~~~~~~~~~l~~~Gl~~~~v---------- 148 (348)
T 3uif_A 91 LVAPWGTTSNSYLVVPKNS-------TAKSIKDL-----KGKKIALHRGRPWELAFSNLLQSEGLTFKDF---------- 148 (348)
T ss_dssp EEEECCCCCCCEEEEETTC-------CCCSGGGG-----TTSEEEECTTSTHHHHHHHHHHHTTCCGGGS----------
T ss_pred EEEeccCCCceEEEEECCC-------CCCCHHHc-----CCCEEEecCCChHHHHHHHHHHHcCCCHHHe----------
Confidence 3445566566778888762 67888887 454 666422 222 2233344556542110
Q ss_pred HHHHHHHHHHhhhcccccchhHHHHhHcCCEEEEEechhcHHHHHHcC
Q 016927 175 ISVQQNLALLANQARLFDSTHYLKAFGIGDVWVAVGWSSDVLPAVKRM 222 (380)
Q Consensus 175 ~~~~~~L~~l~~~v~~~~~~~~~~~~~~Gev~~~~~~s~~~~~~~~~~ 222 (380)
.+..+...+...+|.+|+++.++.+.... .+...+
T Consensus 149 ------------~~v~~~~~~~~~al~~G~vDa~~~~~~~~-~~~~~g 183 (348)
T 3uif_A 149 ------------KIVNVNPQVGAAALASGTVDGFFSLFDSY-ILEDRG 183 (348)
T ss_dssp ------------EEECCCHHHHHHHHHHTSSSEEEESTTHH-HHHHTT
T ss_pred ------------EEEECCHHHHHHHHHcCCCCEEEechHHH-HHHhcC
Confidence 01112334667889999999888876543 444444
No 101
>3c5t_B Exendin-4, exenatide; ligand-bound G protein-coupled receptor extracellular domain protein coupled receptor, glycoprotein, membrane; HET: 10M; 2.10A {Homo sapiens} SCOP: j.6.1.1 PDB: 3c59_B*
Probab=36.21 E-value=20 Score=21.29 Aligned_cols=13 Identities=15% Similarity=0.314 Sum_probs=11.2
Q ss_pred HHHHHHHHHhhHH
Q 016927 264 LIHQWIEFCLQTA 276 (380)
Q Consensus 264 ~A~~fi~fllspe 276 (380)
+|.+||+||++..
T Consensus 10 aakdFv~WL~ngk 22 (31)
T 3c5t_B 10 AVRLFIEWLKNGG 22 (31)
T ss_dssp HHHHHHHHHHTTG
T ss_pred HHHHHHHHHHhCC
Confidence 8999999999743
No 102
>3hv1_A Polar amino acid ABC uptake transporter substrate binding protein; protein structure initiative II(PSI II), nysgxrc; 1.90A {Streptococcus thermophilus lmg 18311}
Probab=34.96 E-value=2.1e+02 Score=24.29 Aligned_cols=116 Identities=10% Similarity=-0.024 Sum_probs=63.2
Q ss_pred EEEeecccceeEEEEeccccccCCCCCCCCHHHhcCccccCceeeecChhHHHHHHHHHcCCCCCCCChhhhhccchHHH
Q 016927 98 IWAAPYRWGTMVIAYKKSKFRKHNLAPIEDWKDLWRPELAGRISMVNSPREVIGSVLKYMGASYNSNNIDLQVAGGKISV 177 (380)
Q Consensus 98 ~Y~vP~~~~~~gi~Yn~d~~~~~g~~~p~sW~dL~~~~~~gki~~~~~~~~~~~~al~~~G~~~~~~~~~~~~~~~~~~~ 177 (380)
.|+.||.....+++.+++. ..++++||-. .+|++..+.. ....+...+.......+.
T Consensus 99 ~fs~p~~~~~~~~~~~~~~-------~i~~~~dL~g----~~i~v~~g~~--~~~~l~~~~~~~~~~~~~---------- 155 (268)
T 3hv1_A 99 DFTEPYMVNEQVLVTKKSS-------GIDSVAGMAG----KTLGAQAGSS--GYDAFNASPKILKDVVAN---------- 155 (268)
T ss_dssp EECCCCEEECEEEEEEGGG-------CCCSSGGGTT----CCEEEETTCH--HHHHHHHCTTTTTTTSGG----------
T ss_pred cCcHHHeeCceEEEEECCC-------CCCCHHHhCC----CEEEEEeCCc--hHHHHHHhhHHHhhhccc----------
Confidence 4677888888899999875 3678888732 2477765332 222222322111100000
Q ss_pred HHHHHHHhhhccccc-chhHHHHhHcCCEEEEEechhcHHHHHHcCC---CcEEEccCCCccceeeeEEEeCC
Q 016927 178 QQNLALLANQARLFD-STHYLKAFGIGDVWVAVGWSSDVLPAVKRMS---NVAVVVPKSGASLWADLWAIPAA 246 (380)
Q Consensus 178 ~~~L~~l~~~v~~~~-~~~~~~~~~~Gev~~~~~~s~~~~~~~~~~~---~i~~~~P~eG~~~~~d~~~I~k~ 246 (380)
..+..+. ..+..+++.+|++++++.+...+....++.+ ++..+ +... ....-+++++++
T Consensus 156 --------~~~~~~~~~~~~~~~L~~GrvDa~i~~~~~~~~~~~~~~~~~~l~~~-~~~~-~~~~~~~~~~k~ 218 (268)
T 3hv1_A 156 --------QKVVQYSTFTQALIDLNSGRIDGLLIDRVYANYYLEKSGVLDQYNVM-PAGY-EGESFAVGARKV 218 (268)
T ss_dssp --------GCEEEESSHHHHHHHHHHTSCSEEEEEHHHHHHHHHHTTCGGGEEEE-ECSS-CCEEECCEECTT
T ss_pred --------ceEEEeCCHHHHHHHHHcCCCCEEEeCHHHHHHHHHhCCCCCceEEC-CCCC-CCCcEEEEEcCC
Confidence 1122332 3567789999999999988776655554433 34443 2111 112235667665
No 103
>4exl_A PBP 1, phosphate-binding protein PSTS 1; center for structural genomics of infectious diseases (csgid national institute of allergy and infectious diseases; 1.70A {Streptococcus pneumoniae}
Probab=34.89 E-value=40 Score=30.10 Aligned_cols=24 Identities=13% Similarity=0.224 Sum_probs=18.7
Q ss_pred HHHHHHHHHhhHHhhchhhhhhcCC
Q 016927 264 LIHQWIEFCLQTARALPFKQEVIPG 288 (380)
Q Consensus 264 ~A~~fi~fllspe~~~~~~~~~~~~ 288 (380)
++.+|++|+++++.|..+.++ .||
T Consensus 219 ~~~~F~~~~~s~~gq~~~~~~-~G~ 242 (265)
T 4exl_A 219 LAAEFLNFVLSDETQEGIVKG-LKY 242 (265)
T ss_dssp HHHHHHHHHHSHHHHHTHHHH-TTC
T ss_pred HHHHHHHHHhCcchHHHHHHh-CCC
Confidence 899999999999988444444 455
No 104
>3kbr_A Cyclohexadienyl dehydratase; pseudomonas aeruginos structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Pseudomonas aeruginosa}
Probab=31.24 E-value=52 Score=27.64 Aligned_cols=111 Identities=7% Similarity=0.013 Sum_probs=65.0
Q ss_pred EEEeecccceeEEEEeccccccCCCCCCCCHHHhcCccccC-ceeeecChhHHHHHHHHHcCCCCCCCChhhhhccchHH
Q 016927 98 IWAAPYRWGTMVIAYKKSKFRKHNLAPIEDWKDLWRPELAG-RISMVNSPREVIGSVLKYMGASYNSNNIDLQVAGGKIS 176 (380)
Q Consensus 98 ~Y~vP~~~~~~gi~Yn~d~~~~~g~~~p~sW~dL~~~~~~g-ki~~~~~~~~~~~~al~~~G~~~~~~~~~~~~~~~~~~ 176 (380)
.|+.||.....+++++++.-. .+++++||-. +| +|++..+.. ...
T Consensus 93 ~fs~p~~~~~~~~~~~~~~~~-----~i~~~~dL~~---~g~~v~~~~g~~--~~~------------------------ 138 (239)
T 3kbr_A 93 YFSIPYLRDGKTPITLCSEEA-----RFQTLEQIDQ---PGVTAIVNPGGT--NEK------------------------ 138 (239)
T ss_dssp EECSCSEEECEEEEEEGGGGG-----GGSSHHHHSS---TTCEEEECTTSH--HHH------------------------
T ss_pred ccchHHhccCcEEEEECCccc-----ccCCHHHhcC---CCcEEEEcCCCc--HHH------------------------
Confidence 467788888888999987532 4689999863 23 466544221 111
Q ss_pred HHHHHHHHhh--hccccc-chhHHHHhHcCCEEEEEechhcHHHHHHcCCCcEEEccCCCccceeeeEEEeC
Q 016927 177 VQQNLALLAN--QARLFD-STHYLKAFGIGDVWVAVGWSSDVLPAVKRMSNVAVVVPKSGASLWADLWAIPA 245 (380)
Q Consensus 177 ~~~~L~~l~~--~v~~~~-~~~~~~~~~~Gev~~~~~~s~~~~~~~~~~~~i~~~~P~eG~~~~~d~~~I~k 245 (380)
.+....+ ++..+. ..+..+++.+|++++++.+...+....++.+++..+.+..-.....-++++++
T Consensus 139 ---~l~~~~~~~~~~~~~~~~~~~~~l~~grvDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k 207 (239)
T 3kbr_A 139 ---FARANLKKARILVHPDNVTIFQQIVDGKADLMMTDAIEARLQSRLHPELCAVHPQQPFDFAEKAYLLPR 207 (239)
T ss_dssp ---HHHHHCSSSEEEECCCTTTHHHHHHTTSCSEEEEEHHHHHHHHHHCTTEEECCCC-CCCCEEECCEECS
T ss_pred ---HHHHhCCCCceEEeCCHHHHHHHHHcCCcCEEEEchHHHHHHHHhCCCcEEecCCCCccccceEEEEcC
Confidence 1111111 122332 34677889999999999887777666666666666543221122233567777
No 105
>1ii5_A SLR1257 protein; membrane protein; HET: GLU; 1.60A {Synechocystis SP} SCOP: c.94.1.1 PDB: 1iit_A 1iiw_A
Probab=29.38 E-value=1e+02 Score=25.46 Aligned_cols=125 Identities=13% Similarity=0.052 Sum_probs=71.1
Q ss_pred EEEeecccceeEEEEeccccccCCCCCCCCHHHhcCccccCceeeecChhHHHHHHHHHcCCCCCCCChhhhhccchHHH
Q 016927 98 IWAAPYRWGTMVIAYKKSKFRKHNLAPIEDWKDLWRPELAGRISMVNSPREVIGSVLKYMGASYNSNNIDLQVAGGKISV 177 (380)
Q Consensus 98 ~Y~vP~~~~~~gi~Yn~d~~~~~g~~~p~sW~dL~~~~~~gki~~~~~~~~~~~~al~~~G~~~~~~~~~~~~~~~~~~~ 177 (380)
.|..||.....+++++++.-. ...+++||-. .+|++...... ...+...+
T Consensus 86 ~~s~p~~~~~~~~~~~~~~~~-----~i~~~~dL~g----~~v~~~~g~~~--~~~l~~~~------------------- 135 (233)
T 1ii5_A 86 TFTQPYFSSGIGLLIPGTATP-----LFRSVGDLKN----KEVAVVRDTTA--VDWANFYQ------------------- 135 (233)
T ss_dssp EECCCCEEEEEEEEEEGGGTT-----TCSSGGGGTT----CEEEEETTSHH--HHHHHHTT-------------------
T ss_pred EEccceeecCeEEEEECCCCC-----CCCCHHHhCC----CeEEEECCccH--HHHHHHcC-------------------
Confidence 466688878888999887521 4678888732 24666543221 11111111
Q ss_pred HHHHHHHhhhccccc-chhHHHHhHcCCEEEEEechhcHHHHHHcCC--CcEEEccCCCccceeeeEEEeCCCCCccccc
Q 016927 178 QQNLALLANQARLFD-STHYLKAFGIGDVWVAVGWSSDVLPAVKRMS--NVAVVVPKSGASLWADLWAIPAASRLETKQI 254 (380)
Q Consensus 178 ~~~L~~l~~~v~~~~-~~~~~~~~~~Gev~~~~~~s~~~~~~~~~~~--~i~~~~P~eG~~~~~d~~~I~k~s~~~~~~~ 254 (380)
..+..+. ..+..+++.+|++++++.+...+.....+.. ++.. ++.. .....-+++++++.+..+
T Consensus 136 --------~~~~~~~~~~~~~~~l~~g~vDa~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~k~~~l~~--- 202 (233)
T 1ii5_A 136 --------ADVRETNNLTAAITLLQKKQVEAVMFDRPALIYYTRQNPNLNLEV-TEIR-VSLEPYGFVLKENSPLQK--- 202 (233)
T ss_dssp --------CEEEEESSHHHHHHHHHTTSCSEEEEEHHHHHHHHHHCGGGCEEE-CSCC-SEEEEEEEEEETTCTTHH---
T ss_pred --------CCeEEcCCHHHHHHHHHcCCccEEEeCHHHHHHHHHhCCCCcEEE-eCcc-ccccceEEEEcCCchHHH---
Confidence 1122222 2466788999999998887766655544443 3433 2211 112234678888865444
Q ss_pred CCCCCCChHHHHHHHHHHhh
Q 016927 255 GGRVRGPSPLIHQWIEFCLQ 274 (380)
Q Consensus 255 ~~~~~~~~~~A~~fi~flls 274 (380)
...++|.-+..
T Consensus 203 ---------~~~~~l~~l~~ 213 (233)
T 1ii5_A 203 ---------TINVEMLNLLY 213 (233)
T ss_dssp ---------HHHHHHHHHHH
T ss_pred ---------HHHHHHHHHHh
Confidence 66777777764
No 106
>3kzg_A Arginine 3RD transport system periplasmic binding protein; arginine transport system, protein structure initiative II(PSI II); 2.06A {Legionella pneumophila subsp} SCOP: c.94.1.0
Probab=29.22 E-value=2e+02 Score=23.78 Aligned_cols=88 Identities=13% Similarity=0.080 Sum_probs=52.8
Q ss_pred EEEeecccceeEEEEeccccccCCCCCCCCHHHhcCccccCceeeecChhHHHHHHHHHcCCCCCCCChhhhhccchHHH
Q 016927 98 IWAAPYRWGTMVIAYKKSKFRKHNLAPIEDWKDLWRPELAGRISMVNSPREVIGSVLKYMGASYNSNNIDLQVAGGKISV 177 (380)
Q Consensus 98 ~Y~vP~~~~~~gi~Yn~d~~~~~g~~~p~sW~dL~~~~~~gki~~~~~~~~~~~~al~~~G~~~~~~~~~~~~~~~~~~~ 177 (380)
.++.||.....+++++++. +.++++||-. .+|++..+... ...+......
T Consensus 82 ~fs~p~~~~~~~~~~~~~~-------~~~~~~dL~g----~~i~~~~g~~~--~~~~~~~~~~----------------- 131 (237)
T 3kzg_A 82 IFSLPYMESNSQYITTVDS-------KISTFDDLHG----KKIGVRKGTPY--ARQVLSENRN----------------- 131 (237)
T ss_dssp EECCCSBCCEEEEEEETTC-------SCCSGGGGTT----CEEEEETTSTH--HHHHHHTCSS-----------------
T ss_pred eeeeeeeecceEEEEECCC-------CCCCHHHhCC----CEEEEecCCHH--HHHHHHhCCC-----------------
Confidence 4677998888999998864 4678888742 24666543221 1111111000
Q ss_pred HHHHHHHhhhccccc-chhHHHHhHcCCEEEEEechhcHHHHHHcCC
Q 016927 178 QQNLALLANQARLFD-STHYLKAFGIGDVWVAVGWSSDVLPAVKRMS 223 (380)
Q Consensus 178 ~~~L~~l~~~v~~~~-~~~~~~~~~~Gev~~~~~~s~~~~~~~~~~~ 223 (380)
.++..+. ..+..+++.+|++++++.+...+....++.+
T Consensus 132 --------~~~~~~~~~~~~~~~l~~G~vDa~~~~~~~~~~~~~~~~ 170 (237)
T 3kzg_A 132 --------NQVIFYELIQDMLLGLSNNQVDASLMDYEAAKYWMASEP 170 (237)
T ss_dssp --------CEEEEESSHHHHHHHHHTTSSSEEEEEHHHHHHHHTTSS
T ss_pred --------CcEEEeCCHHHHHHHHHcCCCCEEEeCcHHHHHHHHhCC
Confidence 0122232 3466788999999999988777766665544
No 107
>1t5q_A Gastric inhibitory polypeptide; GIP, molecular modelling, helix, diabetes, obesity, hormone/growth factor complex; NMR {Synthetic} SCOP: j.6.1.1
Probab=28.34 E-value=34 Score=20.16 Aligned_cols=11 Identities=9% Similarity=0.359 Sum_probs=9.9
Q ss_pred HHHHHHHHHhh
Q 016927 264 LIHQWIEFCLQ 274 (380)
Q Consensus 264 ~A~~fi~flls 274 (380)
+|.+||+|+++
T Consensus 18 ~ak~fv~wLl~ 28 (30)
T 1t5q_A 18 HQQDFVNWLLA 28 (30)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHc
Confidence 79999999986
No 108
>2l63_A GLP-2, glucagon-like peptide 2; hormone, GPCR, docking, small bowel syndrome; NMR {Homo sapiens} PDB: 2l64_A
Probab=27.05 E-value=37 Score=20.49 Aligned_cols=13 Identities=23% Similarity=0.455 Sum_probs=11.1
Q ss_pred HHHHHHHHHhhHH
Q 016927 264 LIHQWIEFCLQTA 276 (380)
Q Consensus 264 ~A~~fi~fllspe 276 (380)
+|++||+|+++..
T Consensus 18 aak~fl~wL~~~k 30 (33)
T 2l63_A 18 AARDFINWLIQTK 30 (33)
T ss_dssp HHHHHHHHHHTTT
T ss_pred HHHHHHHHHHcCC
Confidence 8999999999743
No 109
>1twy_A ABC transporter, periplasmic substrate-binding PR; nysgxrc target, structural genomics, protei structure initiative, PSI; 1.65A {Vibrio cholerae o1 biovar eltor} SCOP: c.94.1.1
Probab=25.90 E-value=1.5e+02 Score=25.39 Aligned_cols=20 Identities=10% Similarity=0.134 Sum_probs=17.5
Q ss_pred HHHHHHHHHhhHHhhchhhh
Q 016927 264 LIHQWIEFCLQTARALPFKQ 283 (380)
Q Consensus 264 ~A~~fi~fllspe~~~~~~~ 283 (380)
.+..|++|+.+.+.|..+.+
T Consensus 251 ~~~~f~~~l~~~~~q~~~~~ 270 (290)
T 1twy_A 251 QTKEFIAFLKSESAKKLIVE 270 (290)
T ss_dssp HHHHHHHHHHSHHHHHHHHH
T ss_pred HHHHHHHHHhCHHHHHHHHH
Confidence 89999999999988877664
No 110
>2g49_C Glucagon preproprotein; protein-peptide complex, hydrolase; 2.50A {Homo sapiens} PDB: 1kx6_A 1gcn_A 1bh0_A 1nau_A
Probab=25.22 E-value=39 Score=19.72 Aligned_cols=11 Identities=0% Similarity=0.398 Sum_probs=9.8
Q ss_pred HHHHHHHHHhh
Q 016927 264 LIHQWIEFCLQ 274 (380)
Q Consensus 264 ~A~~fi~flls 274 (380)
+|.+|++|+++
T Consensus 18 aak~fv~wL~~ 28 (29)
T 2g49_C 18 RAQDFVQWLMN 28 (29)
T ss_pred HHHHHHHHHhc
Confidence 89999999975
No 111
>1jrj_A Exendin-4; Trp-CAGE, GLP-1, poly-proii, hydrophobic cluster, hormone/growth factor complex; NMR {Synthetic} SCOP: j.6.1.1
Probab=25.16 E-value=40 Score=21.13 Aligned_cols=13 Identities=15% Similarity=0.314 Sum_probs=11.2
Q ss_pred HHHHHHHHHhhHH
Q 016927 264 LIHQWIEFCLQTA 276 (380)
Q Consensus 264 ~A~~fi~fllspe 276 (380)
+|++||+||++..
T Consensus 18 aak~fv~wL~~~k 30 (39)
T 1jrj_A 18 AVRLFIEWLKNGG 30 (39)
T ss_dssp HHHHHHHHHHTTG
T ss_pred HHHHHHHHHHcCC
Confidence 8999999999743
No 112
>4ef1_A Pheromone COB1/lipoprotein, YAEC family; periplasmic methionine binding protein, NLPA lipoprotein, ST genomics; 1.90A {Enterococcus faecalis} PDB: 4ef2_A*
Probab=24.69 E-value=39 Score=30.25 Aligned_cols=78 Identities=9% Similarity=0.005 Sum_probs=54.6
Q ss_pred cchhHHHHhHcCCEEEEEechhcHHHHHHcCCCc---EEEccCCCccceeeeEEEeCCCCCcccccCCCCCCChHHHHHH
Q 016927 192 DSTHYLKAFGIGDVWVAVGWSSDVLPAVKRMSNV---AVVVPKSGASLWADLWAIPAASRLETKQIGGRVRGPSPLIHQW 268 (380)
Q Consensus 192 ~~~~~~~~~~~Gev~~~~~~s~~~~~~~~~~~~i---~~~~P~eG~~~~~d~~~I~k~s~~~~~~~~~~~~~~~~~A~~f 268 (380)
...+....|.+|++++++.++..+..+ |.+. ...+- +...-+...+++.++-++.+ ...+|
T Consensus 157 ~aaql~~al~dg~vDaavin~n~a~~a---gl~p~~dal~~E-~~~~~y~n~i~vr~~~~~~~------------~~k~l 220 (246)
T 4ef1_A 157 DPAIMTTLYDNEEGAAVLINSNFAVDQ---GLNPKKDAIALE-KESSPYANIIAVRKEDENNE------------NVKKL 220 (246)
T ss_dssp CGGGHHHHHHTTCSSEEEECHHHHHHT---TCCHHHHCSEEC-SCCGGGCEEEEEEGGGTTCH------------HHHHH
T ss_pred CHHHHHHHhccccccEEEEechHHHHc---CCCCccCceEEc-CCCCCeEEEEEEeccccCCH------------HHHHH
Confidence 456777889999999999887655432 2221 11221 12245667788888877776 89999
Q ss_pred HHHHhhHHhhchhhhhh
Q 016927 269 IEFCLQTARALPFKQEV 285 (380)
Q Consensus 269 i~fllspe~~~~~~~~~ 285 (380)
++-+.|++++..+.+.+
T Consensus 221 v~~~~s~~v~~~i~~~~ 237 (246)
T 4ef1_A 221 VKVLRSKEVQDWITKKW 237 (246)
T ss_dssp HHHHHSHHHHHHHHHHT
T ss_pred HHHHcCHHHHHHHHHHc
Confidence 99999999998877664
No 113
>3iol_B Glucagon; receptor-ligand complex, cell membrane, disulfide bond, G-PR coupled receptor, glycoprotein, membrane, receptor, transdu transmembrane; HET: 10M; 2.10A {Homo sapiens} PDB: 1d0r_A
Probab=22.20 E-value=49 Score=19.56 Aligned_cols=12 Identities=8% Similarity=0.365 Sum_probs=10.2
Q ss_pred HHHHHHHHHHhh
Q 016927 263 PLIHQWIEFCLQ 274 (380)
Q Consensus 263 ~~A~~fi~flls 274 (380)
++|++|++||++
T Consensus 17 ~~ak~Fv~wL~~ 28 (31)
T 3iol_B 17 QAAKEFIAWLVK 28 (31)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHc
Confidence 389999999986
No 114
>4got_A Methionine-binding lipoprotein METQ; NLPA lipoprotein, PF03180 family, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.95A {Bacillus subtilis subsp}
Probab=22.17 E-value=53 Score=29.44 Aligned_cols=79 Identities=10% Similarity=-0.009 Sum_probs=52.5
Q ss_pred cchhHHHHhHcCCEEEEEechhcHHHHHHcCCC-cE--EEccCCCccceeeeEEEeCCCCCcccccCCCCCCChHHHHHH
Q 016927 192 DSTHYLKAFGIGDVWVAVGWSSDVLPAVKRMSN-VA--VVVPKSGASLWADLWAIPAASRLETKQIGGRVRGPSPLIHQW 268 (380)
Q Consensus 192 ~~~~~~~~~~~Gev~~~~~~s~~~~~~~~~~~~-i~--~~~P~eG~~~~~d~~~I~k~s~~~~~~~~~~~~~~~~~A~~f 268 (380)
...+....+..+++++++.++..+..+ |-+ .+ ..+-.....-+...+++.++-++.+ ...+|
T Consensus 159 ~aaql~r~l~d~~vD~avin~n~a~~a---gl~p~~dal~~E~~~~~py~Nvivvr~~d~d~~------------~ik~l 223 (249)
T 4got_A 159 APELTAKAYENKEGDAVFINVNYAIQN---KLNPKKDAIEVESTKNNPYANIIAVRKGEEDSA------------KIKAL 223 (249)
T ss_dssp CTTTHHHHHHTTCSSEEEECHHHHHHT---TCCHHHHCSEECCSTTCCCCEEEEEETTCTTSH------------HHHHH
T ss_pred CHhHhhhhcccccccEEEechhHHHHc---CCChhhhhhcccCCCCCceEEEEEEcccccCCH------------HHHHH
Confidence 345666778888888888877654432 221 11 1221111234667788888877776 89999
Q ss_pred HHHHhhHHhhchhhhhh
Q 016927 269 IEFCLQTARALPFKQEV 285 (380)
Q Consensus 269 i~fllspe~~~~~~~~~ 285 (380)
++-+.|++++..+.+.+
T Consensus 224 v~a~~s~evk~~I~~~y 240 (249)
T 4got_A 224 MEVLHSKKIKDFIEKKY 240 (249)
T ss_dssp HHHHTSHHHHHHHHHHT
T ss_pred HHHHCCHHHHHHHHHHc
Confidence 99999999998877664
No 115
>1oef_A Apolipoprotein E; glycoprotein, plasma, lipid transport, HDL, VLDL, chylomicron, sialic acid, heparin-binding; NMR {Homo sapiens} SCOP: j.39.1.1
Probab=21.57 E-value=41 Score=18.81 Aligned_cols=21 Identities=33% Similarity=0.479 Sum_probs=16.0
Q ss_pred ccCCCHHHHHHHHHHHHHhcC
Q 016927 332 LEPLSEATLSDYEWLVADLQK 352 (380)
Q Consensus 332 ~~~~~~~~~~~~~~~w~~~~~ 352 (380)
+.++.++.++.+..+|+.++.
T Consensus 3 ~~P~~e~ik~q~~~i~e~i~~ 23 (26)
T 1oef_A 3 FEPLVEDMQRQWAGLVEKVQA 23 (26)
T ss_dssp CTTHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHh
Confidence 456667788888899988874
No 116
>2b4n_A Gastric inhibitory polypeptide; GIP, molecular modelling, helix, diabetes, obesity, hormone/growth factor complex; NMR {Homo sapiens} PDB: 2l70_A 2l71_A 2obu_A 2qkh_B*
Probab=21.18 E-value=53 Score=20.92 Aligned_cols=13 Identities=8% Similarity=0.294 Sum_probs=11.4
Q ss_pred HHHHHHHHHhhHH
Q 016927 264 LIHQWIEFCLQTA 276 (380)
Q Consensus 264 ~A~~fi~fllspe 276 (380)
+|.+||+||++..
T Consensus 18 ~akdFv~WL~~~k 30 (42)
T 2b4n_A 18 HQQDFVNWLLAQK 30 (42)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhCC
Confidence 8999999999754
No 117
>4h5g_A Amino acid ABC superfamily ATP binding cassette transporter, binding protein; center for structural genomics of infectious diseases (csgid national institute of allergy and infectious diseases; HET: ARG; 1.78A {Streptococcus pneumoniae} PDB: 4h5f_A*
Probab=21.00 E-value=3.7e+02 Score=22.46 Aligned_cols=112 Identities=13% Similarity=0.039 Sum_probs=60.8
Q ss_pred EEEeecccceeEEEEeccccccCCCCCCCCHHHhcCccccCceeeecChhHHHHHHHHHcCCCCCCCChhhhhccchHHH
Q 016927 98 IWAAPYRWGTMVIAYKKSKFRKHNLAPIEDWKDLWRPELAGRISMVNSPREVIGSVLKYMGASYNSNNIDLQVAGGKISV 177 (380)
Q Consensus 98 ~Y~vP~~~~~~gi~Yn~d~~~~~g~~~p~sW~dL~~~~~~gki~~~~~~~~~~~~al~~~G~~~~~~~~~~~~~~~~~~~ 177 (380)
.|+.||.....+++++++... .+.++++|-. .+|++..+.. ...
T Consensus 93 ~fs~py~~~~~~~~v~~~~~~-----~~~~~~dl~g----~~i~v~~g~~--~~~------------------------- 136 (243)
T 4h5g_A 93 DFSIPYYENKISFLVHKADVE-----KYKDLTSLES----ANIAAQKGTV--PES------------------------- 136 (243)
T ss_dssp EECSCSBCCCEEEEEEGGGTT-----TCCSHHHHHT----SEEEEETTSH--HHH-------------------------
T ss_pred EccCccccCcccccccccccc-----cccccccCCC----CEEEecCCcH--HHH-------------------------
Confidence 367899888888888876533 4677887633 2355544221 111
Q ss_pred HHHHHHHhh--hcccccc-hhHHHHhHcCCEEEEEechhcHHHHHHcCCCcEEEc-cCCCccceeeeEEEeCCC
Q 016927 178 QQNLALLAN--QARLFDS-THYLKAFGIGDVWVAVGWSSDVLPAVKRMSNVAVVV-PKSGASLWADLWAIPAAS 247 (380)
Q Consensus 178 ~~~L~~l~~--~v~~~~~-~~~~~~~~~Gev~~~~~~s~~~~~~~~~~~~i~~~~-P~eG~~~~~d~~~I~k~s 247 (380)
.+.+..+ ++..+.+ .+..+++.+|++++++.....+.....+.+...... +..-.....-+++++|+.
T Consensus 137 --~l~~~~~~~~i~~~~~~~~~~~~l~~GrvD~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~k~~ 208 (243)
T 4h5g_A 137 --MVKEQLPKAQLTSLTNMGEAVNELQAGKIDAVHMDEPVALSYAAKNAGLAVATVSLKMKDGDANAVALRKNS 208 (243)
T ss_dssp --HHHHHCTTSEEEEESCHHHHHHHHHHTSCSEEEEEHHHHHHHHHHCTTEEECSCCCCCCSSCCBCCEEESSC
T ss_pred --HHHHhcccceeEEeCCHHHHHHHHHcCCccEEEecHHHHHHHHHHCCCCceeeccCCcccCceEEEEEeCCC
Confidence 1111111 1233433 466778999999988876655555555555555421 111111112357888874
Done!