Query 016929
Match_columns 380
No_of_seqs 230 out of 1151
Neff 5.6
Searched_HMMs 29240
Date Mon Mar 25 06:08:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016929.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016929hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2crw_A ARF GAP 3, ADP-ribosyla 100.0 3.6E-37 1.2E-41 272.2 11.0 105 1-106 31-136 (149)
2 2owa_A Arfgap-like finger doma 100.0 1E-36 3.4E-41 266.5 8.7 99 1-99 38-137 (138)
3 2p57_A GTPase-activating prote 100.0 2.2E-36 7.5E-41 265.4 9.4 102 1-103 39-141 (144)
4 3dwd_A ADP-ribosylation factor 100.0 8.1E-36 2.8E-40 262.1 8.3 99 1-99 40-139 (147)
5 3sub_A ADP-ribosylation factor 100.0 2E-35 6.9E-40 263.1 9.5 99 1-100 24-122 (163)
6 2iqj_A Stromal membrane-associ 100.0 3.8E-32 1.3E-36 236.6 4.6 85 1-85 29-123 (134)
7 2crr_A Stromal membrane-associ 100.0 5.9E-32 2E-36 237.3 4.4 71 1-71 31-101 (141)
8 2olm_A Nucleoporin-like protei 100.0 2.6E-30 9E-35 226.6 6.2 70 1-71 27-96 (140)
9 3o47_A ADP-ribosylation factor 99.9 6.1E-28 2.1E-32 236.1 9.3 96 1-96 39-135 (329)
10 3jue_A Arfgap with coiled-coil 99.9 3E-27 1E-31 235.3 5.6 86 1-86 47-146 (368)
11 3lju_X ARF-GAP with dual PH do 99.9 2.5E-26 8.5E-31 230.7 5.6 85 1-86 36-133 (386)
12 2b0o_E UPLC1; arfgap, structur 99.9 3E-24 1E-28 206.5 5.6 71 1-71 44-114 (301)
13 1dcq_A PYK2-associated protein 99.9 4.7E-24 1.6E-28 202.7 4.3 71 1-71 19-89 (278)
14 3lvq_E ARF-GAP with SH3 domain 99.9 4E-24 1.4E-28 218.1 3.2 85 1-85 25-123 (497)
15 1gnf_A Transcription factor GA 81.8 0.72 2.5E-05 32.6 2.1 35 1-35 6-41 (46)
16 2vut_I AREA, nitrogen regulato 80.1 0.95 3.3E-05 31.5 2.2 35 1-35 3-38 (43)
17 1u5k_A Hypothetical protein; O 77.5 1.3 4.6E-05 40.6 3.1 44 1-60 152-195 (244)
18 3dfx_A Trans-acting T-cell-spe 74.9 1 3.4E-05 33.9 1.2 35 1-35 9-44 (63)
19 4hc9_A Trans-acting T-cell-spe 74.4 1.5 5E-05 36.7 2.2 36 1-36 7-43 (115)
20 4gat_A Nitrogen regulatory pro 73.6 1.9 6.6E-05 32.6 2.5 35 1-35 11-46 (66)
21 2kae_A GATA-type transcription 62.9 1.9 6.6E-05 33.1 0.5 34 1-35 10-46 (71)
22 1d4u_A Nucleotide excision rep 41.3 4.7 0.00016 33.5 -0.4 28 1-28 7-35 (111)
23 4hc9_A Trans-acting T-cell-spe 38.1 16 0.00054 30.3 2.3 35 1-35 61-96 (115)
24 2han_B Ecdysone receptor; tran 37.4 13 0.00046 30.9 1.7 28 1-31 10-37 (119)
25 2han_A Protein ultraspiracle; 35.5 15 0.00053 29.2 1.7 28 1-31 12-39 (93)
26 1dsz_A RAR-alpha, retinoic aci 34.7 14 0.00047 29.1 1.3 28 1-31 6-33 (86)
27 1dl6_A Transcription factor II 34.5 16 0.00056 26.4 1.6 27 1-28 13-39 (58)
28 1a6y_A Orphan nuclear receptor 34.1 16 0.00056 29.1 1.7 28 1-31 9-36 (94)
29 1cit_A NGFI-B, protein (orphan 33.7 22 0.00076 28.0 2.4 28 1-31 2-29 (89)
30 1ynw_B Retinoic acid receptor 32.5 14 0.00048 29.8 1.1 28 1-31 5-32 (99)
31 2nll_B Protein (thyroid hormon 32.5 13 0.00045 30.2 0.9 28 1-31 3-30 (103)
32 1kb2_A Vitamin D3 receptor; VD 31.8 14 0.00047 30.5 0.9 28 1-31 8-35 (110)
33 1r4i_A Androgen receptor; AR, 31.2 18 0.0006 29.6 1.4 28 1-31 9-36 (105)
34 1hcq_A Protein (estrogen recep 30.3 21 0.00073 27.8 1.7 28 1-31 6-33 (84)
35 1lo1_A Steroid hormone recepto 29.5 13 0.00046 29.9 0.4 27 2-31 7-33 (98)
36 2a66_A Orphan nuclear receptor 29.5 20 0.00068 29.6 1.5 28 1-31 11-38 (113)
37 3j21_g 50S ribosomal protein L 26.7 15 0.00051 26.4 0.2 20 1-26 16-35 (51)
38 2ebl_A COUP transcription fact 26.4 21 0.00072 28.2 1.1 27 2-31 10-36 (89)
39 3cbb_A HNF-4-alpha, hepatocyte 25.3 23 0.00077 27.3 1.0 28 1-31 2-29 (78)
40 2r2v_A GCN4 leucine zipper; co 24.3 97 0.0033 20.3 3.7 22 350-371 3-24 (34)
41 2uzg_A Ubiquitin carboxyl-term 24.2 34 0.0012 27.2 1.9 24 1-24 27-53 (97)
42 3g9m_A Glucocorticoid receptor 23.5 32 0.0011 27.0 1.6 27 1-30 4-30 (90)
43 1dsz_B RXR-alpha, retinoic aci 22.8 19 0.00063 28.3 0.1 27 2-31 8-34 (85)
44 3dzy_D Peroxisome proliferator 21.3 35 0.0012 33.9 1.8 28 1-31 52-79 (419)
45 3h0g_L DNA-directed RNA polyme 21.3 32 0.0011 25.7 1.1 27 1-32 23-49 (63)
46 3iz6_N 40S ribosomal protein S 20.5 37 0.0013 24.7 1.3 35 1-40 20-54 (56)
47 4bbr_M Transcription initiatio 20.0 49 0.0017 32.0 2.5 27 1-27 23-50 (345)
48 3lhn_A Lipoprotein; structural 20.0 24 0.00082 29.7 0.2 21 11-31 28-48 (126)
No 1
>2crw_A ARF GAP 3, ADP-ribosylation factor GTPase-activating protein 3; arfgap domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=100.00 E-value=3.6e-37 Score=272.18 Aligned_cols=105 Identities=56% Similarity=1.027 Sum_probs=100.2
Q ss_pred CCCCCCCCCCCeeEeccceeecccchhhhhcCCCccccccccCCCC-CCHHHHHHHhcCChHHHHHHHhhcCCCCCCchh
Q 016929 1 MCFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLDS-WSAEQLKMMVYGGNNRAQVFFKQHGWTDGGKIE 79 (380)
Q Consensus 1 ~C~DCga~~P~WaSv~~GiflC~~Csg~HR~LG~hiS~VkS~~lD~-W~~~~l~~m~~gGN~~~~~~~~~~~~~~~~~i~ 79 (380)
+|+|||+++|+|+|++||||||++|+|+||.||+|||+||||+||. |+++||++|+.+||.++|+||++|+... .+|+
T Consensus 31 ~CaDCga~~P~WaS~n~GvfiC~~CsgiHR~LG~hiS~VrSl~LD~~W~~~~l~~m~~~GN~~an~~~e~~~~~~-~~i~ 109 (149)
T 2crw_A 31 VCFDCGAKNPSWASITYGVFLCIDCSGSHRSLGVHLSFIRSTELDSNWSWFQLRCMQVGGNASASSFFHQHGCST-NDTN 109 (149)
T ss_dssp BCSSSCCBSCCCEETTTTEECCHHHHHHHHHHCTTTCCEECSSSCCCCCHHHHHHHHTTCHHHHHHHHHHHCCCC-CCHH
T ss_pred cCCCCcCCCCCcEEeccCEEEchhcchhhccCCCCCCeeeccccCCCCCHHHHHHHHHHhhHHHHHHHHhcCCCC-cchh
Confidence 5999999999999999999999999999999999999999999996 9999999999999999999999998864 7899
Q ss_pred hhhccHHHHHHHHHHHHHHHHHhhhcc
Q 016929 80 AKYTSRAAELYKQILAKEVAKNMAEEA 106 (380)
Q Consensus 80 ~KY~~~~a~~Yr~~l~~~v~~~~~~~~ 106 (380)
+||.++++.+||++|.+.+++++..++
T Consensus 110 ~KY~s~~a~~Yr~~l~~~~~~~~~~~~ 136 (149)
T 2crw_A 110 AKYNSRAAQLYREKIKSLASQATRKHG 136 (149)
T ss_dssp HHTTSHHHHHHHHHHHHHHHHHHHTTS
T ss_pred hCcCcHHHHHHHHHHHHHHHHHHHHcC
Confidence 999999999999999999999887654
No 2
>2owa_A Arfgap-like finger domain containing protein; zinc finger protein, cysteine-rich motif, GTPase activation; 2.00A {Cryptosporidium parvum iowa II}
Probab=100.00 E-value=1e-36 Score=266.51 Aligned_cols=99 Identities=46% Similarity=0.872 Sum_probs=95.4
Q ss_pred CCCCCCCCCCCeeEeccceeecccchhhhhcCCCccccccccCCCCCCHHHHHHHhcCChHHHHHHHhh-cCCCCCCchh
Q 016929 1 MCFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLDSWSAEQLKMMVYGGNNRAQVFFKQ-HGWTDGGKIE 79 (380)
Q Consensus 1 ~C~DCga~~P~WaSv~~GiflC~~Csg~HR~LG~hiS~VkS~~lD~W~~~~l~~m~~gGN~~~~~~~~~-~~~~~~~~i~ 79 (380)
+|+|||+++|+|+|++||||||++|+|+||+||+|||+|||++||.|+++||++|+.+||..+|+||++ +|+.+...++
T Consensus 38 ~CaDCga~~P~WaS~n~GvfiC~~CsgiHR~LG~hiS~VrSl~lD~w~~~~l~~m~~~GN~~an~~~e~~~~~~~~~~~~ 117 (138)
T 2owa_A 38 TCFDCESRNPTWLSLSFAVFICLNCSSDHRKMGVHISFVRSSDLDKFTPIQLVRMDIGGNGRARNYFKQVLGVNFSPKTK 117 (138)
T ss_dssp BCTTTCCBSCCEEETTTTEEECHHHHHHHHTTCTTTCCEEETTTSCCCHHHHHHHHHCCHHHHHHHHHHHTCTTCCGGGC
T ss_pred cCCCCcCCCCCeEEecCCEEEhHhhhHHHhCCCCCCCeeeecCcCcCCHHHHHHHHhhccHHHHHHHHHHcCCCCCCCHH
Confidence 599999999999999999999999999999999999999999999999999999999999999999999 8887767899
Q ss_pred hhhccHHHHHHHHHHHHHHH
Q 016929 80 AKYTSRAAELYKQILAKEVA 99 (380)
Q Consensus 80 ~KY~~~~a~~Yr~~l~~~v~ 99 (380)
+||+++++.+|+++|.++|+
T Consensus 118 ~kY~s~~a~~Y~~kL~~~~~ 137 (138)
T 2owa_A 118 EYASSICGRQYKQILDSEIS 137 (138)
T ss_dssp HHHHSHHHHHHHHHHHHHTT
T ss_pred HHHhhHHHHHHHHHHHHHHh
Confidence 99999999999999998764
No 3
>2p57_A GTPase-activating protein ZNF289; zinc finger, GAP, structural genomics, structural genomics consortium, SGC, metal binding protein; 1.80A {Homo sapiens}
Probab=100.00 E-value=2.2e-36 Score=265.41 Aligned_cols=102 Identities=58% Similarity=1.064 Sum_probs=97.9
Q ss_pred CCCCCCCCCCCeeEeccceeecccchhhhhcCCCccccccccCCCC-CCHHHHHHHhcCChHHHHHHHhhcCCCCCCchh
Q 016929 1 MCFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLDS-WSAEQLKMMVYGGNNRAQVFFKQHGWTDGGKIE 79 (380)
Q Consensus 1 ~C~DCga~~P~WaSv~~GiflC~~Csg~HR~LG~hiS~VkS~~lD~-W~~~~l~~m~~gGN~~~~~~~~~~~~~~~~~i~ 79 (380)
+|+|||+++|+|+|++||||||++|+|+||+||+|||+|||++||. |+++||++|+.|||.++|+||+++|+.. .+|+
T Consensus 39 ~CaDCga~~P~WaS~n~GvfiC~~CsgiHR~LG~hIS~VrSl~LD~~W~~~~l~~m~~~GN~~an~~~e~~g~~~-~~~~ 117 (144)
T 2p57_A 39 ACFDCGAKNPSWASITYGVFLCIDCSGVHRSLGVHLSFIRSTELDSNWNWFQLRCMQVGGNANATAFFRQHGCTA-NDAN 117 (144)
T ss_dssp BCTTTCCBSCCEEEGGGTEEECHHHHHHHHHHCTTTCCEEESSSCCCCCHHHHHHHHHCCHHHHHHHHHHTTCCC-CSHH
T ss_pred cCCCCcCCCCCeEEeccCEEEhhhchHHHcCCCCCCCeeeecccCCCCCHHHHHHHHHhCHHHHHHHHHHcCCCC-Cchh
Confidence 5999999999999999999999999999999999999999999996 9999999999999999999999999876 5899
Q ss_pred hhhccHHHHHHHHHHHHHHHHHhh
Q 016929 80 AKYTSRAAELYKQILAKEVAKNMA 103 (380)
Q Consensus 80 ~KY~~~~a~~Yr~~l~~~v~~~~~ 103 (380)
+||.++++.+||++|++.+++++.
T Consensus 118 ~KY~s~aA~~Yr~~l~~~~~~~~~ 141 (144)
T 2p57_A 118 TKYNSRAAQMYREKIRQLGSAALA 141 (144)
T ss_dssp HHHTSHHHHHHHHHHHHHHHHTCC
T ss_pred hccCcHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999988764
No 4
>3dwd_A ADP-ribosylation factor GTPase-activating protein; GAP, structural genomics consorti ER-golgi transport, golgi apparatus, GTPase activation; 2.40A {Homo sapiens}
Probab=100.00 E-value=8.1e-36 Score=262.06 Aligned_cols=99 Identities=42% Similarity=0.852 Sum_probs=91.8
Q ss_pred CCCCCCCCCCCeeEeccceeecccchhhhhcCCCccccccccCCCCCCHHHHHHHhcCChHHHHHHHhhcCC-CCCCchh
Q 016929 1 MCFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLDSWSAEQLKMMVYGGNNRAQVFFKQHGW-TDGGKIE 79 (380)
Q Consensus 1 ~C~DCga~~P~WaSv~~GiflC~~Csg~HR~LG~hiS~VkS~~lD~W~~~~l~~m~~gGN~~~~~~~~~~~~-~~~~~i~ 79 (380)
+|+|||+++|+|+|++||||||++|+|+||+||+|||+||||+||.|+++||+.|+.+||.++|+||++++. .+...|+
T Consensus 40 ~CaDCga~~P~WaS~nlGvfiC~~CSgiHR~LG~hISkVkSl~LD~W~~~el~~m~~~GN~~an~~~ea~~~~~~~~~~~ 119 (147)
T 3dwd_A 40 VCFECGAFNPQWVSVTYGIWICLECSGRHRGLGVHLSFVRSVTMDKWKDIELEKMKAGGNAKFREFLESQEDYDPCWSLQ 119 (147)
T ss_dssp BCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEESCC--CCHHHHHHHHHCCHHHHHHHHHTSTTCCTTCCHH
T ss_pred ccCCCCCCCCCeEEecccEeEhHhhChHHhcCCCCCCccccccccCCCHHHHHHHHHHhhHHHHHHHHhCCCCCCCCCHH
Confidence 599999999999999999999999999999999999999999999999999999999999999999999864 4457899
Q ss_pred hhhccHHHHHHHHHHHHHHH
Q 016929 80 AKYTSRAAELYKQILAKEVA 99 (380)
Q Consensus 80 ~KY~~~~a~~Yr~~l~~~v~ 99 (380)
+||.++++.+||++|+..++
T Consensus 120 ~KY~s~aA~~Yr~~l~~~~e 139 (147)
T 3dwd_A 120 EKYNSRAAALFRDKVVALAE 139 (147)
T ss_dssp HHHTSHHHHHHHHHHHHHHC
T ss_pred HhhCCHHHHHHHHHHHHHHc
Confidence 99999999999999998774
No 5
>3sub_A ADP-ribosylation factor GTPase-activating protein; protein trafficking, hydrolase AC; 2.40A {Plasmodium falciparum 3D7}
Probab=100.00 E-value=2e-35 Score=263.06 Aligned_cols=99 Identities=51% Similarity=0.898 Sum_probs=94.1
Q ss_pred CCCCCCCCCCCeeEeccceeecccchhhhhcCCCccccccccCCCCCCHHHHHHHhcCChHHHHHHHhhcCCCCCCchhh
Q 016929 1 MCFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLDSWSAEQLKMMVYGGNNRAQVFFKQHGWTDGGKIEA 80 (380)
Q Consensus 1 ~C~DCga~~P~WaSv~~GiflC~~Csg~HR~LG~hiS~VkS~~lD~W~~~~l~~m~~gGN~~~~~~~~~~~~~~~~~i~~ 80 (380)
+|+|||+++|+|+|++||||||++|+|+||+||+|||+||||+||.|+++||++|+.+||.++++||++||+.. ..++.
T Consensus 24 ~CaDCga~~P~WaS~nlGvflCi~CSGiHR~LG~hISkVKSltLD~Wt~e~l~~m~~~GN~~an~~~e~~g~~~-~~p~~ 102 (163)
T 3sub_A 24 KCFDCGISNPDWVSVNHGIFLCINCSGVHRSLGVHISIVRSIKMDIFTDEQLKYIDKGGNKKCQTYLENYGISD-FIPER 102 (163)
T ss_dssp BCTTTCCBSCCEEETTTTEEECHHHHHHHHHTCTTTCCEEETTTCCCCHHHHHHHHHCCHHHHHHHHHHTTCTT-SCHHH
T ss_pred ccccCCCCCCCeEEecCCeeEHHhhhHHhcCCCCCCCeeeeccccCcCHHHHHHHHhhCHHHHHHHHHHcCCcc-cChhh
Confidence 59999999999999999999999999999999999999999999999999999999999999999999999875 45678
Q ss_pred hhccHHHHHHHHHHHHHHHH
Q 016929 81 KYTSRAAELYKQILAKEVAK 100 (380)
Q Consensus 81 KY~~~~a~~Yr~~l~~~v~~ 100 (380)
||.++++.+||++|++.|..
T Consensus 103 KY~s~aA~~Yr~~L~~~v~~ 122 (163)
T 3sub_A 103 KYRTKAADHYRKILRSIVHN 122 (163)
T ss_dssp HTTBHHHHHHHHHHHHHHTT
T ss_pred cCCCHHHHHHHHHHHHHHcC
Confidence 99999999999999988754
No 6
>2iqj_A Stromal membrane-associated protein 1-like; zinc, structural genomics, structural genomics consortium, SGC, protein transport; 1.90A {Homo sapiens}
Probab=99.97 E-value=3.8e-32 Score=236.65 Aligned_cols=85 Identities=44% Similarity=0.844 Sum_probs=77.0
Q ss_pred CCCCCCCCCCCeeEeccceeecccchhhhhcCCCccccccccCCCCCCHHHHHHHhcCChHHHHHHHhhcCCCC------
Q 016929 1 MCFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLDSWSAEQLKMMVYGGNNRAQVFFKQHGWTD------ 74 (380)
Q Consensus 1 ~C~DCga~~P~WaSv~~GiflC~~Csg~HR~LG~hiS~VkS~~lD~W~~~~l~~m~~gGN~~~~~~~~~~~~~~------ 74 (380)
+|+|||+++|+|+|++||||||++|+|+||+||+|||+||||+||.|+++||++|+.+||..+|+||+++....
T Consensus 29 ~CaDCg~~~P~WaS~n~GvfiC~~CsgiHR~lG~hiS~VkSl~ld~w~~~~l~~m~~~GN~~an~~~e~~lp~~~~~P~~ 108 (134)
T 2iqj_A 29 FCADCQSKGPRWASWNIGVFICIRCAGIHRNLGVHISRVKSVNLDQWTQEQIQCMQEMGNGKANRLYEAYLPETFRRPQI 108 (134)
T ss_dssp BCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEETTTSCCCHHHHHHHHTCHHHHHHHHHTTTCCSSCCCCCS
T ss_pred cCCcCcCCCCCeEEecCCEEEhHhhhHHHhcCCCCCCceeeccccCCCHHHHHHHHHHchHHHHHHHHhcCCccCCCCCc
Confidence 59999999999999999999999999999999999999999999999999999999999999999999763221
Q ss_pred ----CCchhhhhccH
Q 016929 75 ----GGKIEAKYTSR 85 (380)
Q Consensus 75 ----~~~i~~KY~~~ 85 (380)
+.||++||+.+
T Consensus 109 ~~~~e~fIr~KY~~k 123 (134)
T 2iqj_A 109 DPAVEGFIRDKYEKK 123 (134)
T ss_dssp HHHHHHHHHHHHTSC
T ss_pred hHHHHHHHHHHHhCC
Confidence 14677777765
No 7
>2crr_A Stromal membrane-associated protein SMAP1B; arfgap domain, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.97 E-value=5.9e-32 Score=237.34 Aligned_cols=71 Identities=49% Similarity=0.987 Sum_probs=69.5
Q ss_pred CCCCCCCCCCCeeEeccceeecccchhhhhcCCCccccccccCCCCCCHHHHHHHhcCChHHHHHHHhhcC
Q 016929 1 MCFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLDSWSAEQLKMMVYGGNNRAQVFFKQHG 71 (380)
Q Consensus 1 ~C~DCga~~P~WaSv~~GiflC~~Csg~HR~LG~hiS~VkS~~lD~W~~~~l~~m~~gGN~~~~~~~~~~~ 71 (380)
+|+|||+++|+|+|++||||||++|+|+||+||+|||+||||+||.|+++||++|+.+||..+|+||+++.
T Consensus 31 ~CaDCga~~P~WaS~n~GvfiC~~CsgiHR~LG~hiS~VkSl~ld~w~~~~l~~m~~~GN~~an~~~e~~l 101 (141)
T 2crr_A 31 YCADCEAKGPRWASWNIGVFICIRCAGIHRNLGVHISRVKSVNLDQWTAEQIQCMQDMGNTKARLLYEANL 101 (141)
T ss_dssp SCSSSCCSSCCSEETTTTEECCHHHHHHHHHHCTTTCCCBCSSSSCCCHHHHHHHHHTHHHHHHHHGGGSC
T ss_pred cCCCCCCCCCCeEEeccCeEEhhhhhHhHhcCCCCCCeeeECCCCCCCHHHHHHHHHHccHHHHHHHHhcC
Confidence 59999999999999999999999999999999999999999999999999999999999999999999874
No 8
>2olm_A Nucleoporin-like protein RIP; arfgap, GTPase-activating protein, REV-interacting protein, human immunodeficiency virus, AIDS, structural genomics; 1.48A {Homo sapiens} PDB: 2d9l_A
Probab=99.96 E-value=2.6e-30 Score=226.59 Aligned_cols=70 Identities=26% Similarity=0.595 Sum_probs=67.9
Q ss_pred CCCCCCCCCCCeeEeccceeecccchhhhhcCCCccccccccCCCCCCHHHHHHHhcCChHHHHHHHhhcC
Q 016929 1 MCFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLDSWSAEQLKMMVYGGNNRAQVFFKQHG 71 (380)
Q Consensus 1 ~C~DCga~~P~WaSv~~GiflC~~Csg~HR~LG~hiS~VkS~~lD~W~~~~l~~m~~gGN~~~~~~~~~~~ 71 (380)
+|+|||+++|+|+|++||||||++|+|+||+||+| |+||||+||.|+++||++|+.+||..+|+||+++.
T Consensus 27 ~CaDCg~~~P~WaS~n~GvfiC~~CsgiHR~LG~~-s~VrSl~ld~w~~~~l~~m~~~GN~~an~~~e~~~ 96 (140)
T 2olm_A 27 KCFDCDQRGPTYVNMTVGSFVCTSCSGSLRGLNPP-HRVKSISMTTFTQQEIEFLQKHGNEVCKQIWLGLF 96 (140)
T ss_dssp SCTTTCSSCCCEEETTTTEEECHHHHHHHTTSSSC-CCEEETTTCCCCHHHHHHHHHCHHHHHHHHHTTTC
T ss_pred cCCCCCCCCCCceeeccCEEEchhccchhccCCCc-ceeeecCCCCCCHHHHHHHHHhccHHHHHHHHhhC
Confidence 59999999999999999999999999999999997 99999999999999999999999999999999863
No 9
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.94 E-value=6.1e-28 Score=236.13 Aligned_cols=96 Identities=44% Similarity=0.881 Sum_probs=90.5
Q ss_pred CCCCCCCCCCCeeEeccceeecccchhhhhcCCCccccccccCCCCCCHHHHHHHhcCChHHHHHHHhhcCCC-CCCchh
Q 016929 1 MCFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLDSWSAEQLKMMVYGGNNRAQVFFKQHGWT-DGGKIE 79 (380)
Q Consensus 1 ~C~DCga~~P~WaSv~~GiflC~~Csg~HR~LG~hiS~VkS~~lD~W~~~~l~~m~~gGN~~~~~~~~~~~~~-~~~~i~ 79 (380)
+|+|||+++|+|+|++||||||++|+|+||+||+|||+|||++||.|++++|++|+.+||..+|+||++++.. ....+.
T Consensus 39 ~c~dc~~~~~~~~~~~~~~~~c~~c~~~hr~~~~~~s~v~s~~~~~~~~~~~~~~~~~gN~~~n~~~e~~~~~~~~~~i~ 118 (329)
T 3o47_A 39 VCFECGAFNPQWVSVTYGIWICLECSGRHRGLGVHLSFVRSVTMDKWKDIELEKMKAGGNAKFREFLESQEDYDPCWSLQ 118 (329)
T ss_dssp BCTTTCCBSCCEEEGGGTEEECHHHHHHHHHHCTTTCCEEESSSCCCCHHHHHHHHHCCHHHHHHHHHTCSSCCTTCCHH
T ss_pred cCCCCCCCCCCeEEecCCEEEChhhhhhhcccCCCcCEEeeccccCCCHHHHHHHHHhCcHHHHHHHHhcCCCCCCCCcc
Confidence 5999999999999999999999999999999999999999999999999999999999999999999998643 346799
Q ss_pred hhhccHHHHHHHHHHHH
Q 016929 80 AKYTSRAAELYKQILAK 96 (380)
Q Consensus 80 ~KY~~~~a~~Yr~~l~~ 96 (380)
.+|..+++.+|+..+..
T Consensus 119 ~~y~s~~A~lYr~kl~~ 135 (329)
T 3o47_A 119 EKYNSRAAALFRDKVVA 135 (329)
T ss_dssp HHHHSHHHHHHHHHHHH
T ss_pred ccccchHHHHHhhhccc
Confidence 99999999999998875
No 10
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=99.93 E-value=3e-27 Score=235.28 Aligned_cols=86 Identities=43% Similarity=0.760 Sum_probs=77.3
Q ss_pred CCCCCCCCCCCeeEeccceeecccchhhhhcCCCccccccccCCCCCCHHHHHHHhcCChHHHHHHHhhcCCC-----C-
Q 016929 1 MCFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLDSWSAEQLKMMVYGGNNRAQVFFKQHGWT-----D- 74 (380)
Q Consensus 1 ~C~DCga~~P~WaSv~~GiflC~~Csg~HR~LG~hiS~VkS~~lD~W~~~~l~~m~~gGN~~~~~~~~~~~~~-----~- 74 (380)
+|+|||+++|+|+|++||||||++|+|+||+||+|||+||||+||.|++++|++|+.+||..+|+||+.+... +
T Consensus 47 ~c~dc~~~~p~w~s~~~g~~~c~~c~~~hr~lg~~~s~v~s~~~d~w~~~~~~~~~~~gn~~~n~~~e~~~~~~~~~kp~ 126 (368)
T 3jue_A 47 QCCDCREPAPEWASINLGVTLCIQCSGIHRSLGVHFSKVRSLTLDSWEPELVKLMCELGNVIINQIYEARVEAMAVKKPG 126 (368)
T ss_dssp BCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEETTTSCCCHHHHHHHHHSCHHHHHHHHTTTTTTTTCCCCC
T ss_pred cCCCCCCCCCCeEEecCCeEEcHhHHHHHhccCCCcCeeEEeecccccHHHHHHHHHHccHHHHHHHHhhcccccCcCCC
Confidence 5999999999999999999999999999999999999999999999999999999999999999999986321 0
Q ss_pred --------CCchhhhhccHH
Q 016929 75 --------GGKIEAKYTSRA 86 (380)
Q Consensus 75 --------~~~i~~KY~~~~ 86 (380)
+.||+.||..+.
T Consensus 127 ~~~~~~~re~fIr~KY~~k~ 146 (368)
T 3jue_A 127 PSCSRQEKEAWIHAKYVEKK 146 (368)
T ss_dssp TTSCHHHHHHHHHHHHTSCT
T ss_pred CCCCHHHHHHHHHHHHHhhc
Confidence 136777777764
No 11
>3lju_X ARF-GAP with dual PH domain-containing protein 1; structural genomics consortium, GTPase activation, SGC, binding, nucleus, phosphoprotein; HET: IP9; 1.70A {Homo sapiens} PDB: 3feh_A* 3fm8_C 3mdb_C*
Probab=99.92 E-value=2.5e-26 Score=230.66 Aligned_cols=85 Identities=38% Similarity=0.755 Sum_probs=76.3
Q ss_pred CCCCCCCCCCCeeEeccceeecccchhhhhcCCCccccccccCCCCCCHHHHHHHhcCChHHHHHHHhhcCCC----C--
Q 016929 1 MCFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLDSWSAEQLKMMVYGGNNRAQVFFKQHGWT----D-- 74 (380)
Q Consensus 1 ~C~DCga~~P~WaSv~~GiflC~~Csg~HR~LG~hiS~VkS~~lD~W~~~~l~~m~~gGN~~~~~~~~~~~~~----~-- 74 (380)
+|+|||+++|+|||++||||||++|||+||+| +|||+||||+||.|++++|++|+.+||..+|+||+++... +
T Consensus 36 ~C~dC~~~~p~w~s~~~g~~~C~~Csg~hr~l-~his~v~s~~ld~w~~~~~~~~~~~gN~~~~~~~e~~~~~~~~~p~~ 114 (386)
T 3lju_X 36 RCADCGAPDPDWASYTLGVFICLSCSGIHRNI-PQVSKVKSVRLDAWEEAQVEFMASHGNDAARARFESKVPSFYYRPTP 114 (386)
T ss_dssp BCTTTCCBSCCEEETTTTEEECHHHHHHHHTC-TTTCCEEETTTSCCCHHHHHHHHHSSHHHHHHHHTTTCCTTSCCCCT
T ss_pred cCccCCCCCCCeEEecccEEEhhhhchHhhCC-CccceeeeecccCCCHHHHHHHHHhcchHHHHHHhccCCccCCCCCC
Confidence 59999999999999999999999999999999 9999999999999999999999999999999999987421 0
Q ss_pred -------CCchhhhhccHH
Q 016929 75 -------GGKIEAKYTSRA 86 (380)
Q Consensus 75 -------~~~i~~KY~~~~ 86 (380)
+.||++||..+.
T Consensus 115 ~~~~~~~e~fIr~KY~~~~ 133 (386)
T 3lju_X 115 SDCQLLREQWIRAKYERQE 133 (386)
T ss_dssp TSCHHHHHHHHHHHHTSCT
T ss_pred ccchHHHHHEHHhhhCCCE
Confidence 136777777663
No 12
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=99.89 E-value=3e-24 Score=206.47 Aligned_cols=71 Identities=37% Similarity=0.689 Sum_probs=68.9
Q ss_pred CCCCCCCCCCCeeEeccceeecccchhhhhcCCCccccccccCCCCCCHHHHHHHhcCChHHHHHHHhhcC
Q 016929 1 MCFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLDSWSAEQLKMMVYGGNNRAQVFFKQHG 71 (380)
Q Consensus 1 ~C~DCga~~P~WaSv~~GiflC~~Csg~HR~LG~hiS~VkS~~lD~W~~~~l~~m~~gGN~~~~~~~~~~~ 71 (380)
+|+|||+++|+|+|++||||||++|+|+||.||+|||+|||++||.|++++|.+|..+||..+|++|+...
T Consensus 44 ~c~dc~~~~p~w~s~~~g~~~c~~cs~~hr~lg~~is~v~sl~lD~w~~~~l~~~~~~GN~~~n~i~E~~l 114 (301)
T 2b0o_E 44 QCCDCGAADPTWLSTNLGVLTCIQCSGVHRELGVRFSRMQSLTLDLLGPSELLLALNMGNTSFNEVMEAQL 114 (301)
T ss_dssp BCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEETTTSCCCHHHHHHHHHCCHHHHHHHHTTTC
T ss_pred cCCCCCCCCCCeEEeecCeEEcHHHHHHHHhhCCCcccccccCcCCCCHHHHHHHHHcCCHHHHHHHHHhh
Confidence 59999999999999999999999999999999999999999999999999999999999999999999753
No 13
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=99.88 E-value=4.7e-24 Score=202.69 Aligned_cols=71 Identities=38% Similarity=0.689 Sum_probs=69.0
Q ss_pred CCCCCCCCCCCeeEeccceeecccchhhhhcCCCccccccccCCCCCCHHHHHHHhcCChHHHHHHHhhcC
Q 016929 1 MCFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLDSWSAEQLKMMVYGGNNRAQVFFKQHG 71 (380)
Q Consensus 1 ~C~DCga~~P~WaSv~~GiflC~~Csg~HR~LG~hiS~VkS~~lD~W~~~~l~~m~~gGN~~~~~~~~~~~ 71 (380)
.|+|||+++|+|+|++||||||++|||+||+||+|||+|||++||.|++.+|..|..+||..+++||+.+.
T Consensus 19 ~c~dc~~~~p~w~s~~~g~~~c~~c~~~hr~lg~~is~v~s~~~d~~~~~~l~~~~~~GN~~~n~i~e~~l 89 (278)
T 1dcq_A 19 VCCDCGAPDPTWLSTNLGILTCIECSGIHRELGVHYSRMQSLTLDVLGTSELLLAKNIGNAGFNEIMECCL 89 (278)
T ss_dssp BCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEETTTSCCCGGGGHHHHHSCHHHHHHHHTTTC
T ss_pred cCCCCCCCCCCeEEecCCeEEcHHHHHHHhhcCCCcceeeeeecCCCCHHHHHHHHHcCcHHHHHHHHhhC
Confidence 59999999999999999999999999999999999999999999999999999999999999999999763
No 14
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.88 E-value=4e-24 Score=218.11 Aligned_cols=85 Identities=35% Similarity=0.611 Sum_probs=77.2
Q ss_pred CCCCCCCCCCCeeEeccceeecccchhhhhcCCCccccccccCCCCCCHHHHHHHhcCChHHHHHHHhhcCCC-----C-
Q 016929 1 MCFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLDSWSAEQLKMMVYGGNNRAQVFFKQHGWT-----D- 74 (380)
Q Consensus 1 ~C~DCga~~P~WaSv~~GiflC~~Csg~HR~LG~hiS~VkS~~lD~W~~~~l~~m~~gGN~~~~~~~~~~~~~-----~- 74 (380)
+|+|||+++|+|+|+++|||||++|||+||+||+|||+|||++||.|+++++++|+.+||..+|.+|+..... +
T Consensus 25 ~c~dc~~~~p~w~s~~~~~~~c~~c~~~hr~lg~~~s~vrsl~ld~w~~~~~~l~~~~GN~~an~i~E~~lp~~~~~kP~ 104 (497)
T 3lvq_E 25 QCCDCGAADPTWLSTNLGVLTCIQCSGVHRELGVRFSRMQSLTLDLLGPSELLLALNMGNTSFNEVMEAQLPSHGGPKPS 104 (497)
T ss_dssp BCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEETTTSCCCGGGGTTTTTCCHHHHHHHHTTTCCSSSCSCCC
T ss_pred cccCCCCCCCCEEEechhHHhHHhhHHHHHhhccccceecccccCCCCHHHHHHHHHHhhHHHHHHHHhhcccccCCCCC
Confidence 5999999999999999999999999999999999999999999999999999999999999999999976321 1
Q ss_pred --------CCchhhhhccH
Q 016929 75 --------GGKIEAKYTSR 85 (380)
Q Consensus 75 --------~~~i~~KY~~~ 85 (380)
..+|++||..+
T Consensus 105 ~~s~~~~re~fIraky~~~ 123 (497)
T 3lvq_E 105 AESDMGTRRDYIMAKYVEH 123 (497)
T ss_dssp TTCCHHHHHHHHHHHHTTC
T ss_pred CcCcHHHHHHHHHHHhhcc
Confidence 14788888765
No 15
>1gnf_A Transcription factor GATA-1; zinc finger, transcription regulation; NMR {Mus musculus} SCOP: g.39.1.1 PDB: 1y0j_A 2l6y_A 2l6z_A
Probab=81.84 E-value=0.72 Score=32.57 Aligned_cols=35 Identities=31% Similarity=0.795 Sum_probs=30.3
Q ss_pred CCCCCCCC-CCCeeEeccceeecccchhhhhcCCCc
Q 016929 1 MCFDCNAK-NPTWASVTYGIFLCIDCSAVHRSLGVH 35 (380)
Q Consensus 1 ~C~DCga~-~P~WaSv~~GiflC~~Csg~HR~LG~h 35 (380)
.|.+|+.. -|.|-.-+.|..||-.|.-.++..|++
T Consensus 6 ~C~~C~tt~Tp~WR~gp~G~~LCNaCGl~~k~~~~~ 41 (46)
T 1gnf_A 6 ECVNCGATATPLWRRDRTGHYLCNACGLYHKMNGQN 41 (46)
T ss_dssp CCTTTCCCCCSSCBCCTTCCCBCSHHHHHHHHTCSC
T ss_pred CCCCcCCCCCCcCccCCCCCccchHHHHHHHHcCCC
Confidence 59999974 589999999999999998888877765
No 16
>2vut_I AREA, nitrogen regulatory protein AREA; transcription regulation, protein-protein interactions, metal-binding, nitrate assimilation; HET: NAD; 2.3A {Emericella nidulans} SCOP: g.39.1.1 PDB: 2vus_I* 2vuu_I*
Probab=80.11 E-value=0.95 Score=31.47 Aligned_cols=35 Identities=29% Similarity=0.626 Sum_probs=29.4
Q ss_pred CCCCCCCC-CCCeeEeccceeecccchhhhhcCCCc
Q 016929 1 MCFDCNAK-NPTWASVTYGIFLCIDCSAVHRSLGVH 35 (380)
Q Consensus 1 ~C~DCga~-~P~WaSv~~GiflC~~Csg~HR~LG~h 35 (380)
.|++|+.. -|.|-.-..|-.||-.|.-..+..|++
T Consensus 3 ~C~~C~tt~Tp~WR~gp~G~~LCNaCGl~~k~~~~~ 38 (43)
T 2vut_I 3 TCTNCFTQTTPLWRRNPEGQPLCNACGLFLKLHGVV 38 (43)
T ss_dssp CCSSSCCCCCSCCEECTTSCEECHHHHHHHHHHSSC
T ss_pred cCCccCCCCCCccccCCCCCcccHHHHHHHHHhCCC
Confidence 59999975 589999999999999998777766654
No 17
>1u5k_A Hypothetical protein; OBD-fold, Zn-binding, recombination,replication; 2.00A {Deinococcus radiodurans} SCOP: b.40.4.13 g.45.1.2 PDB: 1w3s_A 2v1c_C
Probab=77.49 E-value=1.3 Score=40.58 Aligned_cols=44 Identities=23% Similarity=0.501 Sum_probs=32.9
Q ss_pred CCCCCCCCCCCeeEeccceeecccchhhhhcCCCccccccccCCCCCCHHHHHHHhcCCh
Q 016929 1 MCFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLDSWSAEQLKMMVYGGN 60 (380)
Q Consensus 1 ~C~DCga~~P~WaSv~~GiflC~~Csg~HR~LG~hiS~VkS~~lD~W~~~~l~~m~~gGN 60 (380)
.|+.||.+...|.++..|.++|..|...+ .++.+.+..|+..-+
T Consensus 152 ~C~~cg~~~~~~fs~~~Gg~~c~~~~~~~----------------~l~~~~l~~l~~l~~ 195 (244)
T 1u5k_A 152 RCARCGAPDPEHPDPLGGQLLCSKCAALP----------------PYPPAVLDFLRHAVR 195 (244)
T ss_dssp BCTTTCCBSCCEECTTTSSEECTTTCSSC----------------CCCHHHHHHHHHTTT
T ss_pred ccccCCCCCCCcEecccCEEECcccCCCC----------------CCCHHHHHHHHHHHh
Confidence 39999998777889999999999995321 356777777754433
No 18
>3dfx_A Trans-acting T-cell-specific transcription factor GATA-3; activator, DNA-binding, metal-binding, nucleus; HET: DNA; 2.70A {Mus musculus} PDB: 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A*
Probab=74.91 E-value=1 Score=33.91 Aligned_cols=35 Identities=17% Similarity=0.502 Sum_probs=29.7
Q ss_pred CCCCCCCC-CCCeeEeccceeecccchhhhhcCCCc
Q 016929 1 MCFDCNAK-NPTWASVTYGIFLCIDCSAVHRSLGVH 35 (380)
Q Consensus 1 ~C~DCga~-~P~WaSv~~GiflC~~Csg~HR~LG~h 35 (380)
.|++|+.. -|.|-.-+.|-.||-.|.-.++..|++
T Consensus 9 ~C~~C~tt~Tp~WR~gp~G~~LCNACGl~~~~~~~~ 44 (63)
T 3dfx_A 9 SCANCQTTTTTLWRRNANGDPVCNACGLYYKLHNIN 44 (63)
T ss_dssp CCTTTCCSCCSSCCCCTTSCCCCHHHHHHHHHHSSC
T ss_pred cCCCcCCCCCCccCCCCCCCchhhHHHHHHHHcCCC
Confidence 59999974 589999999999999998777776654
No 19
>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A
Probab=74.37 E-value=1.5 Score=36.66 Aligned_cols=36 Identities=31% Similarity=0.743 Sum_probs=29.9
Q ss_pred CCCCCCCC-CCCeeEeccceeecccchhhhhcCCCcc
Q 016929 1 MCFDCNAK-NPTWASVTYGIFLCIDCSAVHRSLGVHI 36 (380)
Q Consensus 1 ~C~DCga~-~P~WaSv~~GiflC~~Csg~HR~LG~hi 36 (380)
+|.+||+. -|.|-.-..|-+||-.|--.++..|++-
T Consensus 7 ~C~~Cg~~~Tp~WRr~~~g~~lCnaCgl~~Kl~G~nR 43 (115)
T 4hc9_A 7 ECVNCGATSTPLWRRDGTGHYLCNACGLYHKMNGQNR 43 (115)
T ss_dssp CCTTTCCSCCSSCEECTTSCEECHHHHHHHHHHSSCC
T ss_pred CCCCCCCccCCcceECCCCCCcCcchhhhhhhccccc
Confidence 59999975 5999999999999999987777655553
No 20
>4gat_A Nitrogen regulatory protein AREA; DNA binding protein, transcription factor, zinc binding domain, complex (transcription regulation/DNA); HET: DNA; NMR {Emericella nidulans} SCOP: g.39.1.1 PDB: 5gat_A* 6gat_A* 7gat_A*
Probab=73.56 E-value=1.9 Score=32.59 Aligned_cols=35 Identities=29% Similarity=0.613 Sum_probs=29.8
Q ss_pred CCCCCCC-CCCCeeEeccceeecccchhhhhcCCCc
Q 016929 1 MCFDCNA-KNPTWASVTYGIFLCIDCSAVHRSLGVH 35 (380)
Q Consensus 1 ~C~DCga-~~P~WaSv~~GiflC~~Csg~HR~LG~h 35 (380)
.|+.|+. .-|.|-.-+.|-.||-.|--.++..|++
T Consensus 11 ~C~~C~t~~Tp~WR~gp~G~~LCNaCGl~~~~~~~~ 46 (66)
T 4gat_A 11 TCTNCFTQTTPLWRRNPEGQPLCNACGLFLKLHGVV 46 (66)
T ss_dssp CCTTTCCCCCSSCEEETTTEEECHHHHHHHHHHCSC
T ss_pred CCCCCCCCCCCcCCcCCCCCCccHHHHHHHHHcCCC
Confidence 5999997 5699999999999999998777766654
No 21
>2kae_A GATA-type transcription factor; zinc finger, GATA-type, DNA; NMR {Caenorhabditis elegans}
Probab=62.88 E-value=1.9 Score=33.12 Aligned_cols=34 Identities=21% Similarity=0.567 Sum_probs=27.9
Q ss_pred CCCCCCC-CCCCeeE--eccceeecccchhhhhcCCCc
Q 016929 1 MCFDCNA-KNPTWAS--VTYGIFLCIDCSAVHRSLGVH 35 (380)
Q Consensus 1 ~C~DCga-~~P~WaS--v~~GiflC~~Csg~HR~LG~h 35 (380)
.|..|+. .-|.|-. -.-| .||-.|.-.++..|++
T Consensus 10 ~C~nC~tt~Tp~WRrg~~~~g-~LCNACGl~~~~~~~~ 46 (71)
T 2kae_A 10 QCSNCSVTETIRWRNIRSKEG-IQCNACFIYQRKYNKT 46 (71)
T ss_dssp CCSSSCCSCCSSCCCCSSSSC-CCSSHHHHHHHHHHSC
T ss_pred cCCccCCCCCCccccCCCCCC-ccchHHHHHHHHhCCC
Confidence 5999997 4589998 6778 8999998877777665
No 22
>1d4u_A Nucleotide excision repair protein XPA (XPA-MBD); DNA repair, loop-rich domain, relaxation, DNA binding protein; NMR {Homo sapiens} SCOP: a.6.1.2 g.39.1.5 PDB: 1xpa_A
Probab=41.32 E-value=4.7 Score=33.47 Aligned_cols=28 Identities=18% Similarity=0.445 Sum_probs=21.3
Q ss_pred CCCCCCCCCCCe-eEeccceeecccchhh
Q 016929 1 MCFDCNAKNPTW-ASVTYGIFLCIDCSAV 28 (380)
Q Consensus 1 ~C~DCga~~P~W-aSv~~GiflC~~Csg~ 28 (380)
.|++||..--.| ..-+|++.||..|...
T Consensus 7 ~C~eC~~~~~d~~l~~~F~~~VC~~Cr~~ 35 (111)
T 1d4u_A 7 ICEECGKEFMDSYLMDHFDLPTCDDCRDA 35 (111)
T ss_dssp ECTTTCCEESCSSSTTTTSCCCCTTTCSS
T ss_pred ccccCCChhhHHHHHHhCCeeechhhccc
Confidence 499999754333 3568999999999765
No 23
>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A
Probab=38.11 E-value=16 Score=30.29 Aligned_cols=35 Identities=17% Similarity=0.502 Sum_probs=29.9
Q ss_pred CCCCCCC-CCCCeeEeccceeecccchhhhhcCCCc
Q 016929 1 MCFDCNA-KNPTWASVTYGIFLCIDCSAVHRSLGVH 35 (380)
Q Consensus 1 ~C~DCga-~~P~WaSv~~GiflC~~Csg~HR~LG~h 35 (380)
.|..|+. .-|.|-.-+.|-.||-.|--.++..|++
T Consensus 61 ~C~~C~t~~tp~WRr~~~g~~lCNaCgl~~~~~~~~ 96 (115)
T 4hc9_A 61 SCANCQTTTTTLWRRNANGDPVCNACGLYYKLHNIN 96 (115)
T ss_dssp CCTTTCCSCCSSCEECTTSCEECHHHHHHHHHHSSC
T ss_pred cCCCcCCCCcceeEECCCCCCcchHHHHHHHHhCCC
Confidence 5999997 5699999999999999998777776665
No 24
>2han_B Ecdysone receptor; transcription regulation, transcription factor, DNA-binding, nuclear protein, nuclear receptor, zinc finger; 1.95A {Drosophila melanogaster} SCOP: g.39.1.2 PDB: 1r0o_B 1r0n_B
Probab=37.43 E-value=13 Score=30.90 Aligned_cols=28 Identities=21% Similarity=0.727 Sum_probs=22.8
Q ss_pred CCCCCCCCCCCeeEeccceeecccchhhhhc
Q 016929 1 MCFDCNAKNPTWASVTYGIFLCIDCSAVHRS 31 (380)
Q Consensus 1 ~C~DCga~~P~WaSv~~GiflC~~Csg~HR~ 31 (380)
.|.-||.+. ....|||+.|..|.++.|-
T Consensus 10 ~C~VCg~~a---~g~hyGv~sC~aCk~FFRR 37 (119)
T 2han_B 10 LCLVCGDRA---SGYHYNALTCEGCKGFFRR 37 (119)
T ss_dssp BCTTTCSBC---CEEETTEEECHHHHHHHHH
T ss_pred cCeEeCCcC---CcceECchhHHhhHHhhhh
Confidence 388888653 3689999999999998874
No 25
>2han_A Protein ultraspiracle; transcription regulation, transcription factor, DNA-binding, nuclear protein, nuclear receptor, zinc finger; 1.95A {Drosophila melanogaster} SCOP: g.39.1.2
Probab=35.48 E-value=15 Score=29.21 Aligned_cols=28 Identities=21% Similarity=0.776 Sum_probs=22.5
Q ss_pred CCCCCCCCCCCeeEeccceeecccchhhhhc
Q 016929 1 MCFDCNAKNPTWASVTYGIFLCIDCSAVHRS 31 (380)
Q Consensus 1 ~C~DCga~~P~WaSv~~GiflC~~Csg~HR~ 31 (380)
.|.-||.+. ....|||+.|..|.++.|-
T Consensus 12 ~C~VCgd~a---~g~hyGv~sC~aCk~FFRR 39 (93)
T 2han_A 12 LCSICGDRA---SGKHYGVYSCEGCKGFFKR 39 (93)
T ss_dssp BCTTTCSBC---CEEETTEEECHHHHHHHHH
T ss_pred CCcEeCCCC---cCeecCcchhHHHHHHHHh
Confidence 377888643 3679999999999998874
No 26
>1dsz_A RAR-alpha, retinoic acid receptor alpha; RAR, nuclear receptor, protein-DNA, transcription/DNA complex; HET: DNA; 1.70A {Homo sapiens} SCOP: g.39.1.2 PDB: 1hra_A
Probab=34.74 E-value=14 Score=29.07 Aligned_cols=28 Identities=32% Similarity=0.813 Sum_probs=22.4
Q ss_pred CCCCCCCCCCCeeEeccceeecccchhhhhc
Q 016929 1 MCFDCNAKNPTWASVTYGIFLCIDCSAVHRS 31 (380)
Q Consensus 1 ~C~DCga~~P~WaSv~~GiflC~~Csg~HR~ 31 (380)
.|.-||.+. ....|||+.|..|.++.|-
T Consensus 6 ~C~VCg~~a---~g~hyGv~sC~aCk~FFRR 33 (86)
T 1dsz_A 6 PCFVCQDKS---SGYHYGVSACEGCKGFFRR 33 (86)
T ss_dssp CCTTTCSCC---CSEETTEECCHHHHHHHHH
T ss_pred CCcEECCCc---cceeeCchhHHHHHHHHHH
Confidence 378888644 2578999999999998874
No 27
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=34.50 E-value=16 Score=26.45 Aligned_cols=27 Identities=19% Similarity=0.334 Sum_probs=19.0
Q ss_pred CCCCCCCCCCCeeEeccceeecccchhh
Q 016929 1 MCFDCNAKNPTWASVTYGIFLCIDCSAV 28 (380)
Q Consensus 1 ~C~DCga~~P~WaSv~~GiflC~~Csg~ 28 (380)
+|-+|+..+-.+ ...-|.++|..|--+
T Consensus 13 ~Cp~C~~~~lv~-D~~~ge~vC~~CGlV 39 (58)
T 1dl6_A 13 TCPNHPDAILVE-DYRAGDMICPECGLV 39 (58)
T ss_dssp SBTTBSSSCCEE-CSSSCCEECTTTCCE
T ss_pred cCcCCCCCceeE-eCCCCeEEeCCCCCE
Confidence 489998865322 346789999999443
No 28
>1a6y_A Orphan nuclear receptor NR1D1; orphan receptor, DNA-binding, reverb, REV- ERB, transcription regulation, transcription/DNA complex; HET: DNA 5IU; 2.30A {Homo sapiens} SCOP: g.39.1.2 PDB: 1ga5_A* 1hlz_A
Probab=34.13 E-value=16 Score=29.11 Aligned_cols=28 Identities=25% Similarity=0.748 Sum_probs=22.4
Q ss_pred CCCCCCCCCCCeeEeccceeecccchhhhhc
Q 016929 1 MCFDCNAKNPTWASVTYGIFLCIDCSAVHRS 31 (380)
Q Consensus 1 ~C~DCga~~P~WaSv~~GiflC~~Csg~HR~ 31 (380)
.|.-||.+. ....|||+.|..|.++.|-
T Consensus 9 ~C~VCg~~a---~g~hyGv~sC~aCk~FFRR 36 (94)
T 1a6y_A 9 LCKVCGDVA---SGFHYGVLACEGCKGFFRR 36 (94)
T ss_dssp BCTTTSSBC---CEEETTEEECHHHHHHHHH
T ss_pred cCcEeCCCC---cceEeCccchhhhhhehhe
Confidence 377888643 3679999999999998873
No 29
>1cit_A NGFI-B, protein (orphan nuclear receptor NGFI-B); early immediate response gene product, transcription factor, monomeric protein-DNA complex; HET: DNA; 2.70A {Rattus norvegicus} SCOP: g.39.1.2
Probab=33.72 E-value=22 Score=28.04 Aligned_cols=28 Identities=21% Similarity=0.627 Sum_probs=22.5
Q ss_pred CCCCCCCCCCCeeEeccceeecccchhhhhc
Q 016929 1 MCFDCNAKNPTWASVTYGIFLCIDCSAVHRS 31 (380)
Q Consensus 1 ~C~DCga~~P~WaSv~~GiflC~~Csg~HR~ 31 (380)
.|.-||.+. ....|||+.|..|.++.|-
T Consensus 2 ~C~VCg~~a---~g~hyGv~sC~aCk~FFRR 29 (89)
T 1cit_A 2 RCAVCGDNA---SCQHYGVRTCEGCKGFFKR 29 (89)
T ss_dssp CCSSSCCCC---CEEETTEEECHHHHHHHHH
T ss_pred CCeEeCCCC---cceEeCccchhhhhhhcee
Confidence 478888643 2679999999999998874
No 30
>1ynw_B Retinoic acid receptor RXR-alpha, retinoid X receptor; VDR, nuclear receptor, protein-DNA complex, transcripti complex; 3.00A {Homo sapiens} SCOP: g.39.1.2
Probab=32.53 E-value=14 Score=29.81 Aligned_cols=28 Identities=21% Similarity=0.793 Sum_probs=22.5
Q ss_pred CCCCCCCCCCCeeEeccceeecccchhhhhc
Q 016929 1 MCFDCNAKNPTWASVTYGIFLCIDCSAVHRS 31 (380)
Q Consensus 1 ~C~DCga~~P~WaSv~~GiflC~~Csg~HR~ 31 (380)
.|.-||.+. ....|||+.|..|.++.|-
T Consensus 5 ~C~VCg~~a---~g~hyGv~sC~aCk~FFRR 32 (99)
T 1ynw_B 5 ICAICGDRS---SGKHYGVYSCEGCKGFFKR 32 (99)
T ss_dssp CBTTTBSCC---CBCCTTSCBCSHHHHHHHH
T ss_pred CCceeCCCC---cceeeCccchHHHHHHHHh
Confidence 478888643 3578999999999998874
No 31
>2nll_B Protein (thyroid hormone receptor); complex (transcription regulation/DNA), DNA-binding, nuclear protein, zinc- finger, multigene family; HET: DNA 5IU; 1.90A {Homo sapiens} SCOP: g.39.1.2 PDB: 3m9e_A*
Probab=32.53 E-value=13 Score=30.18 Aligned_cols=28 Identities=25% Similarity=0.673 Sum_probs=22.5
Q ss_pred CCCCCCCCCCCeeEeccceeecccchhhhhc
Q 016929 1 MCFDCNAKNPTWASVTYGIFLCIDCSAVHRS 31 (380)
Q Consensus 1 ~C~DCga~~P~WaSv~~GiflC~~Csg~HR~ 31 (380)
.|.-||.+. ....|||+.|..|.++.|-
T Consensus 3 ~C~VCgd~a---~g~hyGv~sC~aCk~FFRR 30 (103)
T 2nll_B 3 LCVVCGDKA---TGYHYRCITCEGCKGFFRR 30 (103)
T ss_dssp BCTTTCSBC---CSEETTEECCHHHHHHHHH
T ss_pred CCeEeCCcC---cCeecCcccHHHhhhhhee
Confidence 378888643 4678999999999998874
No 32
>1kb2_A Vitamin D3 receptor; VDR, nuclear receptor, protein-DNA complex, transcription/DNA complex; 2.70A {Homo sapiens} SCOP: g.39.1.2 PDB: 1kb4_A 1kb6_A 1ynw_A
Probab=31.79 E-value=14 Score=30.45 Aligned_cols=28 Identities=18% Similarity=0.610 Sum_probs=22.4
Q ss_pred CCCCCCCCCCCeeEeccceeecccchhhhhc
Q 016929 1 MCFDCNAKNPTWASVTYGIFLCIDCSAVHRS 31 (380)
Q Consensus 1 ~C~DCga~~P~WaSv~~GiflC~~Csg~HR~ 31 (380)
.|.-||.+. ....|||+.|..|.++.|-
T Consensus 8 ~C~VCg~~a---~g~hyGv~sC~aCk~FFRR 35 (110)
T 1kb2_A 8 ICGVCGDRA---TGFHFNAMTCEGCKGFFRR 35 (110)
T ss_dssp BCTTTCSBC---CSEETTEECCHHHHHHHHH
T ss_pred CCcEeCCCC---CceEeCchhHhhhhhhhee
Confidence 378888643 3578999999999998874
No 33
>1r4i_A Androgen receptor; AR, steroid receptor, protein-DNA complex, transcription/DNA complex; 3.10A {Rattus norvegicus} SCOP: g.39.1.2
Probab=31.17 E-value=18 Score=29.57 Aligned_cols=28 Identities=21% Similarity=0.712 Sum_probs=22.4
Q ss_pred CCCCCCCCCCCeeEeccceeecccchhhhhc
Q 016929 1 MCFDCNAKNPTWASVTYGIFLCIDCSAVHRS 31 (380)
Q Consensus 1 ~C~DCga~~P~WaSv~~GiflC~~Csg~HR~ 31 (380)
.|.-||.+ . ....|||+.|..|.++.|-
T Consensus 9 ~C~VCg~~--a-~g~hyGv~sC~aCk~FFRR 36 (105)
T 1r4i_A 9 TCLICGDE--A-SGAHYGALTCGSCKVFFKR 36 (105)
T ss_dssp BCSSSCSB--E-EEEETTEEEEHHHHHHHHH
T ss_pred CCcEeCCC--C-CceEeCCcchhhhhhhhce
Confidence 37788853 2 4689999999999998874
No 34
>1hcq_A Protein (estrogen receptor); protein-DNA complex, complexed with drug, transcription/DNA complex; HET: DNA; 2.40A {Homo sapiens} SCOP: g.39.1.2 PDB: 1hcp_A 4aa6_A
Probab=30.32 E-value=21 Score=27.83 Aligned_cols=28 Identities=29% Similarity=0.752 Sum_probs=22.4
Q ss_pred CCCCCCCCCCCeeEeccceeecccchhhhhc
Q 016929 1 MCFDCNAKNPTWASVTYGIFLCIDCSAVHRS 31 (380)
Q Consensus 1 ~C~DCga~~P~WaSv~~GiflC~~Csg~HR~ 31 (380)
.|.-||.+. ....|||+.|..|.++.|-
T Consensus 6 ~C~VCg~~a---~g~hyGv~sC~aCk~FFRR 33 (84)
T 1hcq_A 6 YCAVCNDYA---SGYHYGVWSCEGCKAFFKR 33 (84)
T ss_dssp BCTTTCSBC---CEEETTEEECHHHHHHHHH
T ss_pred cCcEECCCC---CCeeeCccchHHhhhhhhh
Confidence 377788643 3679999999999998874
No 35
>1lo1_A Steroid hormone receptor ERR2; estrogen related receptor 2, DNA binding domain, HERR2, hormone nuclear receptor; NMR {Homo sapiens} SCOP: g.39.1.2
Probab=29.50 E-value=13 Score=29.87 Aligned_cols=27 Identities=26% Similarity=0.716 Sum_probs=21.8
Q ss_pred CCCCCCCCCCeeEeccceeecccchhhhhc
Q 016929 2 CFDCNAKNPTWASVTYGIFLCIDCSAVHRS 31 (380)
Q Consensus 2 C~DCga~~P~WaSv~~GiflC~~Csg~HR~ 31 (380)
|.-||.+. ....|||+.|..|.++.|-
T Consensus 7 C~VCg~~a---~g~hyGv~sC~aCk~FFRR 33 (98)
T 1lo1_A 7 CLVCGDIA---SGYHYGVASCEACKAFFKR 33 (98)
T ss_dssp ETTTTEEC---SEESSSSEECHHHHHHHHH
T ss_pred CcEeCCCC---cCeeeCccchhhhhhhhee
Confidence 77788643 3679999999999998874
No 36
>2a66_A Orphan nuclear receptor NR5A2; protein-DNA complex, zinc finger, DNA- binding domain, transcription factor, FTZ-F1, C-terminal extension; 2.20A {Homo sapiens} PDB: 2ff0_A
Probab=29.46 E-value=20 Score=29.63 Aligned_cols=28 Identities=25% Similarity=0.765 Sum_probs=22.4
Q ss_pred CCCCCCCCCCCeeEeccceeecccchhhhhc
Q 016929 1 MCFDCNAKNPTWASVTYGIFLCIDCSAVHRS 31 (380)
Q Consensus 1 ~C~DCga~~P~WaSv~~GiflC~~Csg~HR~ 31 (380)
.|.-||.+ . ....|||+.|..|.++.|-
T Consensus 11 ~C~VCgd~--a-~G~HyGv~sC~aCk~FFRR 38 (113)
T 2a66_A 11 LCPVCGDK--V-SGYHYGLLTCESCKGFFKR 38 (113)
T ss_dssp BCTTTCCB--E-EEEETTEEEEHHHHHHHHH
T ss_pred CCcEeCCC--C-cceeeCcccHHHHHHHHhh
Confidence 37888854 2 3789999999999998873
No 37
>3j21_g 50S ribosomal protein L40E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=26.67 E-value=15 Score=26.35 Aligned_cols=20 Identities=30% Similarity=0.884 Sum_probs=16.5
Q ss_pred CCCCCCCCCCCeeEeccceeecccch
Q 016929 1 MCFDCNAKNPTWASVTYGIFLCIDCS 26 (380)
Q Consensus 1 ~C~DCga~~P~WaSv~~GiflC~~Cs 26 (380)
+|..|++. +..|+.-|..|-
T Consensus 16 iCpkC~a~------~~~gaw~CrKCG 35 (51)
T 3j21_g 16 VCLRCGAT------NPWGAKKCRKCG 35 (51)
T ss_dssp ECTTTCCE------ECTTCSSCSSSS
T ss_pred cCCCCCCc------CCCCceecCCCC
Confidence 59999998 457999999994
No 38
>2ebl_A COUP transcription factor 1; DNA-binding, metal-binding, nuclear protein, receptor, transcription regulation, zinc, EAR3, erbal3 tfcoup1; NMR {Homo sapiens}
Probab=26.40 E-value=21 Score=28.18 Aligned_cols=27 Identities=30% Similarity=0.808 Sum_probs=21.8
Q ss_pred CCCCCCCCCCeeEeccceeecccchhhhhc
Q 016929 2 CFDCNAKNPTWASVTYGIFLCIDCSAVHRS 31 (380)
Q Consensus 2 C~DCga~~P~WaSv~~GiflC~~Csg~HR~ 31 (380)
|.-||.+.- ...|||+.|..|.++.|-
T Consensus 10 C~VCg~~a~---g~hyGv~sC~aCk~FFRR 36 (89)
T 2ebl_A 10 CVVCGDKSS---GKHYGQFTCEGCKSFFKR 36 (89)
T ss_dssp CTTTCSBCC---SEETTEECCHHHHHHHHH
T ss_pred CcEeCCCCc---ceEeCchhhHHhhhhhhe
Confidence 778886432 578999999999998874
No 39
>3cbb_A HNF-4-alpha, hepatocyte nuclear factor 4-alpha, DNA binding domain, nuclear; zinc finger; 2.00A {Homo sapiens}
Probab=25.26 E-value=23 Score=27.26 Aligned_cols=28 Identities=25% Similarity=0.641 Sum_probs=22.0
Q ss_pred CCCCCCCCCCCeeEeccceeecccchhhhhc
Q 016929 1 MCFDCNAKNPTWASVTYGIFLCIDCSAVHRS 31 (380)
Q Consensus 1 ~C~DCga~~P~WaSv~~GiflC~~Csg~HR~ 31 (380)
.|.-||.+.- ...||++.|..|.++.|-
T Consensus 2 ~C~VCg~~a~---g~hyGv~sC~aCk~FFRR 29 (78)
T 3cbb_A 2 LCAICGDRAT---GKHYGASSCDGCKGFFRR 29 (78)
T ss_dssp BCTTTSSBCC---SEETTEECCHHHHHHHHH
T ss_pred CCeEeCCCCC---ceEeCCcchhhhceeeeE
Confidence 3777885432 578999999999998873
No 40
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=24.28 E-value=97 Score=20.34 Aligned_cols=22 Identities=23% Similarity=0.250 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 016929 350 ISSLKNIAGETGKKLSSLASSL 371 (380)
Q Consensus 350 l~~lk~~v~~~A~KLs~~a~~~ 371 (380)
|.||-+-|++++++...+++.|
T Consensus 3 MnQledKvEel~~~~~~l~nEv 24 (34)
T 2r2v_A 3 LKQVADKLEEVASKLYHNANEL 24 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhHHHHHHH
Confidence 6789999999999999999886
No 41
>2uzg_A Ubiquitin carboxyl-terminal hydrolase 33; UBL conjugation pathway, DE-ubiquitination, alternative splicing, metal-binding, thiol protease; NMR {Homo sapiens} SCOP: g.44.1.5
Probab=24.24 E-value=34 Score=27.24 Aligned_cols=24 Identities=29% Similarity=0.811 Sum_probs=18.0
Q ss_pred CCCCCCCCCCC-eeEec--cceeeccc
Q 016929 1 MCFDCNAKNPT-WASVT--YGIFLCID 24 (380)
Q Consensus 1 ~C~DCga~~P~-WaSv~--~GiflC~~ 24 (380)
.|.+|+..++. |+++. -|-+.|-+
T Consensus 27 ~C~~C~~~~~~lw~CL~~~Cg~vgCgr 53 (97)
T 2uzg_A 27 TCQDCKVQGPNLWACLENRCSYVGCGE 53 (97)
T ss_dssp CCSSSCCCCSSCEEECCTTCCCEECCT
T ss_pred cCcCcCCCCCCceeeecccCCCcccCC
Confidence 49999966655 98887 77777743
No 42
>3g9m_A Glucocorticoid receptor; glucocorticoid, DNA-binding, allostery, lever ARM, transcription, hormone; HET: DNA; 1.61A {Rattus norvegicus} SCOP: g.39.1.2 PDB: 3g6p_A* 3g6q_B* 3g6r_B* 3g6u_A* 3g8u_A* 3g8x_A* 3g97_B* 3g99_A* 3g9i_A* 3g9j_A* 3fyl_A* 3g9o_B* 3g9p_B* 3g6t_A* 1r4o_A 1r4r_A 1glu_A* 1gdc_A 2gda_A 1rgd_A ...
Probab=23.49 E-value=32 Score=27.02 Aligned_cols=27 Identities=26% Similarity=0.854 Sum_probs=21.5
Q ss_pred CCCCCCCCCCCeeEeccceeecccchhhhh
Q 016929 1 MCFDCNAKNPTWASVTYGIFLCIDCSAVHR 30 (380)
Q Consensus 1 ~C~DCga~~P~WaSv~~GiflC~~Csg~HR 30 (380)
.|.-||.+. ....|||+.|..|.++.|
T Consensus 4 ~C~VCg~~a---~g~hyGv~sC~~Ck~FFR 30 (90)
T 3g9m_A 4 MCLVCSDEA---SGCHYGVLTCGSCKVFFK 30 (90)
T ss_dssp BCTTTCSBC---CEEETTEEECHHHHHHHH
T ss_pred cCccCCCcC---cccccCCccchhHhHHhh
Confidence 377888643 357899999999999876
No 43
>1dsz_B RXR-alpha, retinoic acid receptor RXR-alpha; RAR, nuclear receptor, protein-DNA, transcription/DNA complex; HET: DNA; 1.70A {Homo sapiens} SCOP: g.39.1.2 PDB: 1by4_A* 1rxr_A 1r0n_A 1r0o_A 2nll_A*
Probab=22.82 E-value=19 Score=28.26 Aligned_cols=27 Identities=22% Similarity=0.791 Sum_probs=21.5
Q ss_pred CCCCCCCCCCeeEeccceeecccchhhhhc
Q 016929 2 CFDCNAKNPTWASVTYGIFLCIDCSAVHRS 31 (380)
Q Consensus 2 C~DCga~~P~WaSv~~GiflC~~Csg~HR~ 31 (380)
|.-||.+. ....|||+.|..|.++.|-
T Consensus 8 C~VCg~~a---~g~hyGv~sC~aCk~FFRR 34 (85)
T 1dsz_B 8 CAICGDRS---SGKHYGVYSCEGCKGFFKR 34 (85)
T ss_dssp CTTTCCEE---SSEETTEECCHHHHHHHHH
T ss_pred CCEeCCCC---CceeeCccchHHHHHHHHH
Confidence 77788643 2568999999999998874
No 44
>3dzy_D Peroxisome proliferator-activated receptor gamma; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_D* 3e00_D* 2env_A
Probab=21.34 E-value=35 Score=33.86 Aligned_cols=28 Identities=29% Similarity=0.717 Sum_probs=22.5
Q ss_pred CCCCCCCCCCCeeEeccceeecccchhhhhc
Q 016929 1 MCFDCNAKNPTWASVTYGIFLCIDCSAVHRS 31 (380)
Q Consensus 1 ~C~DCga~~P~WaSv~~GiflC~~Csg~HR~ 31 (380)
.|.-||.+.- ...|||+.|..|.++.|-
T Consensus 52 ~C~vC~~~~~---g~hygv~~C~~C~~FFrR 79 (419)
T 3dzy_D 52 ECRVCGDKAS---GFHYGVHACEGCKGFFRR 79 (419)
T ss_dssp CCSSSCSCCC---SBCSSSBCCHHHHHHHHH
T ss_pred cCeECCCcCC---CCccCcccchhhhHHHcc
Confidence 3888997543 468999999999998763
No 45
>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=21.29 E-value=32 Score=25.66 Aligned_cols=27 Identities=33% Similarity=0.819 Sum_probs=16.7
Q ss_pred CCCCCCCCCCCeeEeccceeecccchhhhhcC
Q 016929 1 MCFDCNAKNPTWASVTYGIFLCIDCSAVHRSL 32 (380)
Q Consensus 1 ~C~DCga~~P~WaSv~~GiflC~~Csg~HR~L 32 (380)
+|.+||..+.-- .....-|..| -||.|
T Consensus 23 ~C~~Cg~~~~l~---~~~~iRC~~C--G~RIL 49 (63)
T 3h0g_L 23 LCADCGARNTIQ---AKEVIRCREC--GHRVM 49 (63)
T ss_dssp BCSSSCCBCCCC---SSSCCCCSSS--CCCCC
T ss_pred ECCCCCCeeecC---CCCceECCCC--CcEEE
Confidence 488888766421 2456778888 34543
No 46
>3iz6_N 40S ribosomal protein S29 (S14P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 2zkq_n
Probab=20.48 E-value=37 Score=24.74 Aligned_cols=35 Identities=29% Similarity=0.654 Sum_probs=21.5
Q ss_pred CCCCCCCCCCCeeEeccceeecccchhhhhcCCCcccccc
Q 016929 1 MCFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVR 40 (380)
Q Consensus 1 ~C~DCga~~P~WaSv~~GiflC~~Csg~HR~LG~hiS~Vk 40 (380)
.|.-||.+.-- ==.||+.+|..|- |.+...|-|||
T Consensus 20 rC~vcGr~~g~--iRkfGL~~cR~cf---Re~A~~iGF~k 54 (56)
T 3iz6_N 20 VCRVCGNSHGL--IRKYGLMCCRQCF---RSDAKDIGFIK 54 (56)
T ss_dssp CCSSCCCSCCC--TTTTSCTTHHHHH---HTTCCSTTCCS
T ss_pred eeecCCCCccc--ccccCCcHHHHHH---HHHHHhcCcee
Confidence 37777765432 2268888888773 55555666654
No 47
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=20.03 E-value=49 Score=32.04 Aligned_cols=27 Identities=22% Similarity=0.567 Sum_probs=20.1
Q ss_pred CCCCCCCCCCCe-eEeccceeecccchh
Q 016929 1 MCFDCNAKNPTW-ASVTYGIFLCIDCSA 27 (380)
Q Consensus 1 ~C~DCga~~P~W-aSv~~GiflC~~Csg 27 (380)
+|-+||...|.- .-..-|-.+|.+|--
T Consensus 23 ~Cp~C~~~~~~lv~D~~~G~~vC~~CGl 50 (345)
T 4bbr_M 23 TCPECKVYPPKIVERFSEGDVVCALCGL 50 (345)
T ss_dssp CCSSCCCSSCCEEEEGGGTEEEETTTCB
T ss_pred cCCCCCCCCCceeEECCCCcEEeCCCCC
Confidence 599999854543 245789999999953
No 48
>3lhn_A Lipoprotein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, lipid binding protein; HET: MSE GOL; 1.42A {Shewanella oneidensis}
Probab=20.02 E-value=24 Score=29.66 Aligned_cols=21 Identities=24% Similarity=0.827 Sum_probs=18.2
Q ss_pred CeeEeccceeecccchhhhhc
Q 016929 11 TWASVTYGIFLCIDCSAVHRS 31 (380)
Q Consensus 11 ~WaSv~~GiflC~~Csg~HR~ 31 (380)
.|..+-.|++-|-+|.||.-.
T Consensus 28 d~~GtY~G~LPCADC~GI~tt 48 (126)
T 3lhn_A 28 DWPGVYEGVLPCASCEGIQTT 48 (126)
T ss_dssp CCCEEEEEEECCTTSSEEEEE
T ss_pred ccceEEEEEeECCCCCCeEEE
Confidence 599999999999999997543
Done!