Query 016930
Match_columns 380
No_of_seqs 264 out of 820
Neff 6.5
Searched_HMMs 29240
Date Mon Mar 25 06:09:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016930.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016930hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2jjm_A Glycosyl transferase, g 83.9 5.3 0.00018 37.8 10.0 89 199-291 296-384 (394)
2 3okp_A GDP-mannose-dependent a 82.3 4.9 0.00017 37.6 9.0 92 200-299 292-383 (394)
3 3c48_A Predicted glycosyltrans 80.0 10 0.00035 36.2 10.5 87 200-291 338-424 (438)
4 2gek_A Phosphatidylinositol ma 78.0 5.1 0.00017 37.7 7.5 96 197-300 293-388 (406)
5 3oy2_A Glycosyltransferase B73 74.4 8.5 0.00029 36.5 8.1 92 199-300 285-395 (413)
6 3qhp_A Type 1 capsular polysac 72.9 9.9 0.00034 31.0 7.2 75 200-280 87-162 (166)
7 2x6q_A Trehalose-synthase TRET 72.0 15 0.0005 34.9 9.2 85 199-289 327-411 (416)
8 2bfw_A GLGA glycogen synthase; 70.1 12 0.00043 31.4 7.4 70 200-274 128-198 (200)
9 2r60_A Glycosyl transferase, g 69.6 14 0.00049 36.2 8.7 89 200-292 371-459 (499)
10 2iw1_A Lipopolysaccharide core 66.5 7.1 0.00024 36.2 5.5 88 199-292 282-371 (374)
11 3s28_A Sucrose synthase 1; gly 55.1 24 0.00081 38.1 7.6 90 200-293 677-770 (816)
12 3fro_A GLGA glycogen synthase; 48.8 26 0.00089 32.9 6.1 88 200-296 343-431 (439)
13 2jq3_A Apolipoprotein C-III; A 30.3 27 0.00091 26.2 2.1 40 263-304 34-73 (79)
14 2dt7_B Splicing factor 3 subun 23.2 72 0.0025 24.4 3.6 35 260-294 38-85 (85)
15 2qzs_A Glycogen synthase; glyc 23.1 1.8E+02 0.0063 27.8 7.5 82 200-288 379-472 (485)
16 1rzu_A Glycogen synthase 1; gl 22.6 1.6E+02 0.0054 28.2 6.9 90 201-300 379-480 (485)
17 1hnr_A H-NS; histone-like prot 22.1 25 0.00085 24.1 0.6 17 187-204 5-23 (47)
18 2auh_B Growth factor receptor- 20.1 66 0.0023 23.0 2.5 19 254-272 28-47 (59)
No 1
>2jjm_A Glycosyl transferase, group 1 family protein; anthrax, nucleotide, carbohydrate; 3.10A {Bacillus anthracis} PDB: 3mbo_A*
Probab=83.90 E-value=5.3 Score=37.81 Aligned_cols=89 Identities=7% Similarity=-0.008 Sum_probs=63.1
Q ss_pred ccccchHHHHhcCCeeeeecCcchhhhhcccCCcceEEEecCCCCcccHHHHHHhccccHHHHHHHHHHHHHHHHHhhCh
Q 016930 199 AWSVSEKYILACDSVTLIVTPKYYDFYTRGLMPLHHYWPINDHDKCRSIKFAVDWGNSHKKKAKAMGRAASKFIQDELKL 278 (380)
Q Consensus 199 ~~S~rlk~lL~~~Svvl~~~~~~~e~f~~~L~P~~HYvPv~~d~~~sdl~~~v~w~~~h~~~A~~IA~~g~~f~~~~L~~ 278 (380)
+++..+---|+||-.|+..+.. -..+.+.....=+-+..++ .++|.++|..+.++++..++++++|++++.+.++.
T Consensus 296 ~~~~~~~EAma~G~PvI~~~~~---~~~e~v~~~~~g~~~~~~d-~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~s~ 371 (394)
T 2jjm_A 296 SFGLVLLEAMACGVPCIGTRVG---GIPEVIQHGDTGYLCEVGD-TTGVADQAIQLLKDEELHRNMGERARESVYEQFRS 371 (394)
T ss_dssp SCCHHHHHHHHTTCCEEEECCT---TSTTTCCBTTTEEEECTTC-HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHSCH
T ss_pred CCchHHHHHHhcCCCEEEecCC---ChHHHhhcCCceEEeCCCC-HHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhCCH
Confidence 3455566778899988887642 2233344444334444332 47899999999899999999999999999899998
Q ss_pred hhHHHHHHHHHHH
Q 016930 279 DYVYDYMFHLLNQ 291 (380)
Q Consensus 279 ~~~~~Y~~~LL~e 291 (380)
+.+..-+..++.+
T Consensus 372 ~~~~~~~~~~~~~ 384 (394)
T 2jjm_A 372 EKIVSQYETIYYD 384 (394)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 8877666555544
No 2
>3okp_A GDP-mannose-dependent alpha-(1-6)-phosphatidylino monomannoside mannosyltransferase...; GT-B fold, alpha-mannosyltransferase; HET: GDD; 2.00A {Corynebacterium glutamicum} PDB: 3okc_A* 3oka_A*
Probab=82.33 E-value=4.9 Score=37.58 Aligned_cols=92 Identities=13% Similarity=0.064 Sum_probs=62.9
Q ss_pred cccchHHHHhcCCeeeeecCcchhhhhcccCCcceEEEecCCCCcccHHHHHHhccccHHHHHHHHHHHHHHHHHhhChh
Q 016930 200 WSVSEKYILACDSVTLIVTPKYYDFYTRGLMPLHHYWPINDHDKCRSIKFAVDWGNSHKKKAKAMGRAASKFIQDELKLD 279 (380)
Q Consensus 200 ~S~rlk~lL~~~Svvl~~~~~~~e~f~~~L~P~~HYvPv~~d~~~sdl~~~v~w~~~h~~~A~~IA~~g~~f~~~~L~~~ 279 (380)
++..+---|+||-.|+..+. .-..+.+... .=+-+..++ ..+|.++|..+.++++..++++++|++++++.++.+
T Consensus 292 ~~~~~~Ea~a~G~PvI~~~~---~~~~e~i~~~-~g~~~~~~d-~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~s~~ 366 (394)
T 3okp_A 292 LGIVYLEAQACGVPVIAGTS---GGAPETVTPA-TGLVVEGSD-VDKLSELLIELLDDPIRRAAMGAAGRAHVEAEWSWE 366 (394)
T ss_dssp SCHHHHHHHHTTCCEEECSS---TTGGGGCCTT-TEEECCTTC-HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTBHH
T ss_pred cCcHHHHHHHcCCCEEEeCC---CChHHHHhcC-CceEeCCCC-HHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhCCHH
Confidence 44455567889988888663 2333344444 333344322 589999999999999999999999999999989888
Q ss_pred hHHHHHHHHHHHHHhhcccC
Q 016930 280 YVYDYMFHLLNQYSKLLRYQ 299 (380)
Q Consensus 280 ~~~~Y~~~LL~eYakl~~~~ 299 (380)
.+..-+..++ .++.+-+
T Consensus 367 ~~~~~~~~~~---~~~~r~~ 383 (394)
T 3okp_A 367 IMGERLTNIL---QSEPRKL 383 (394)
T ss_dssp HHHHHHHHHH---HSCCC--
T ss_pred HHHHHHHHHH---HHhccCc
Confidence 7766555544 4555443
No 3
>3c48_A Predicted glycosyltransferases; retaining glycosyltransferase, beta alpha beta, substrate AS catalysis; 2.10A {Corynebacterium glutamicum} PDB: 3c4v_A* 3c4q_A*
Probab=80.04 E-value=10 Score=36.22 Aligned_cols=87 Identities=9% Similarity=-0.015 Sum_probs=59.7
Q ss_pred cccchHHHHhcCCeeeeecCcchhhhhcccCCcceEEEecCCCCcccHHHHHHhccccHHHHHHHHHHHHHHHHHhhChh
Q 016930 200 WSVSEKYILACDSVTLIVTPKYYDFYTRGLMPLHHYWPINDHDKCRSIKFAVDWGNSHKKKAKAMGRAASKFIQDELKLD 279 (380)
Q Consensus 200 ~S~rlk~lL~~~Svvl~~~~~~~e~f~~~L~P~~HYvPv~~d~~~sdl~~~v~w~~~h~~~A~~IA~~g~~f~~~~L~~~ 279 (380)
++..+---|+||-.|+..+.. -..+.+.....=+-+..++ .++|.++|..+.++++..++++++|++++.+ .+.+
T Consensus 338 ~~~~~~Eama~G~PvI~~~~~---~~~e~i~~~~~g~~~~~~d-~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~-~s~~ 412 (438)
T 3c48_A 338 FGLVAMEAQASGTPVIAARVG---GLPIAVAEGETGLLVDGHS-PHAWADALATLLDDDETRIRMGEDAVEHART-FSWA 412 (438)
T ss_dssp SCHHHHHHHHTTCCEEEESCT---THHHHSCBTTTEEEESSCC-HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH-HHHH
T ss_pred CchHHHHHHHcCCCEEecCCC---ChhHHhhCCCcEEECCCCC-HHHHHHHHHHHHcCHHHHHHHHHHHHHHHHh-CCHH
Confidence 445556678899988887632 2233344444433344332 4789999999989999999999999999988 7777
Q ss_pred hHHHHHHHHHHH
Q 016930 280 YVYDYMFHLLNQ 291 (380)
Q Consensus 280 ~~~~Y~~~LL~e 291 (380)
.+..-+..++.+
T Consensus 413 ~~~~~~~~~~~~ 424 (438)
T 3c48_A 413 ATAAQLSSLYND 424 (438)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 665555444444
No 4
>2gek_A Phosphatidylinositol mannosyltransferase (PIMA); GT4 glycosyltransferase, rossmann fold, complex; HET: GDP; 2.40A {Mycobacterium smegmatis} PDB: 2gej_A*
Probab=78.02 E-value=5.1 Score=37.75 Aligned_cols=96 Identities=9% Similarity=0.006 Sum_probs=66.1
Q ss_pred CcccccchHHHHhcCCeeeeecCcchhhhhcccCCcceEEEecCCCCcccHHHHHHhccccHHHHHHHHHHHHHHHHHhh
Q 016930 197 GSAWSVSEKYILACDSVTLIVTPKYYDFYTRGLMPLHHYWPINDHDKCRSIKFAVDWGNSHKKKAKAMGRAASKFIQDEL 276 (380)
Q Consensus 197 G~~~S~rlk~lL~~~Svvl~~~~~~~e~f~~~L~P~~HYvPv~~d~~~sdl~~~v~w~~~h~~~A~~IA~~g~~f~~~~L 276 (380)
+-+++..+---|+||-.|+..+.. -+.+.+....+=+-+..++ .+++.++|..+.++++..++++++|++++. ..
T Consensus 293 ~e~~~~~~~Ea~a~G~PvI~~~~~---~~~e~i~~~~~g~~~~~~d-~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~-~~ 367 (406)
T 2gek_A 293 GESFGIVLVEAMAAGTAVVASDLD---AFRRVLADGDAGRLVPVDD-ADGMAAALIGILEDDQLRAGYVARASERVH-RY 367 (406)
T ss_dssp CCSSCHHHHHHHHHTCEEEECCCH---HHHHHHTTTTSSEECCTTC-HHHHHHHHHHHHHCHHHHHHHHHHHHHHGG-GG
T ss_pred CCCCchHHHHHHHcCCCEEEecCC---cHHHHhcCCCceEEeCCCC-HHHHHHHHHHHHcCHHHHHHHHHHHHHHHH-hC
Confidence 445566667778899999987642 2333444444433344332 478999999999999999999999999998 78
Q ss_pred ChhhHHHHHHHHHHHHHhhcccCC
Q 016930 277 KLDYVYDYMFHLLNQYSKLLRYQP 300 (380)
Q Consensus 277 ~~~~~~~Y~~~LL~eYakl~~~~P 300 (380)
+.+.+..-+..++. +++.-.+
T Consensus 368 s~~~~~~~~~~~~~---~~~~~~~ 388 (406)
T 2gek_A 368 DWSVVSAQIMRVYE---TVSGAGI 388 (406)
T ss_dssp BHHHHHHHHHHHHH---HHCCTTC
T ss_pred CHHHHHHHHHHHHH---HHHhhcc
Confidence 87776665555544 4555444
No 5
>3oy2_A Glycosyltransferase B736L; rossmann fold, GDP-mannose, sugar, VIRU proteins, viral protein,transferase; 2.31A {Paramecium bursaria chlorella virus NY} PDB: 3oy7_A*
Probab=74.38 E-value=8.5 Score=36.51 Aligned_cols=92 Identities=12% Similarity=0.053 Sum_probs=61.3
Q ss_pred ccccchHHHHhcCCeeeeecCcchhhhhcccCCcce-------------------EEEecCCCCcccHHHHHHhccccHH
Q 016930 199 AWSVSEKYILACDSVTLIVTPKYYDFYTRGLMPLHH-------------------YWPINDHDKCRSIKFAVDWGNSHKK 259 (380)
Q Consensus 199 ~~S~rlk~lL~~~Svvl~~~~~~~e~f~~~L~P~~H-------------------YvPv~~d~~~sdl~~~v~w~~~h~~ 259 (380)
+++..+---|+||-.|+..+.. -..+.+....+ .++.. | ..+|.++| .+.++++
T Consensus 285 ~~~~~~lEAma~G~PvI~s~~~---g~~e~v~~~~~~~i~~~~~~~~~~~~G~~gl~~~~-d--~~~la~~i-~l~~~~~ 357 (413)
T 3oy2_A 285 GFGLCSAEGAVLGKPLIISAVG---GADDYFSGDCVYKIKPSAWISVDDRDGIGGIEGII-D--VDDLVEAF-TFFKDEK 357 (413)
T ss_dssp SSCHHHHHHHTTTCCEEEECCH---HHHHHSCTTTSEEECCCEEEECTTTCSSCCEEEEC-C--HHHHHHHH-HHTTSHH
T ss_pred CCCcHHHHHHHcCCCEEEcCCC---ChHHHHccCcccccccccccccccccCcceeeCCC-C--HHHHHHHH-HHhcCHH
Confidence 3444455678888888876532 22333444443 44433 2 47999999 9889999
Q ss_pred HHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHHhhcccCC
Q 016930 260 KAKAMGRAASKFIQDELKLDYVYDYMFHLLNQYSKLLRYQP 300 (380)
Q Consensus 260 ~A~~IA~~g~~f~~~~L~~~~~~~Y~~~LL~eYakl~~~~P 300 (380)
..++++++|++++.+.++.+.+..-+..+ |.+++.-++
T Consensus 358 ~~~~~~~~a~~~~~~~fs~~~~~~~~~~~---~~~~~~~~~ 395 (413)
T 3oy2_A 358 NRKEYGKRVQDFVKTKPTWDDISSDIIDF---FNSLLRVES 395 (413)
T ss_dssp HHHHHHHHHHHHHTTSCCHHHHHHHHHHH---HHHHTC---
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHH---HHHHHhhcC
Confidence 99999999999998888887776655444 455665544
No 6
>3qhp_A Type 1 capsular polysaccharide biosynthesis prote (CAPJ); rossmann fold, glycosyltransferase, transferase; 1.50A {Helicobacter pylori}
Probab=72.91 E-value=9.9 Score=31.01 Aligned_cols=75 Identities=11% Similarity=0.114 Sum_probs=48.2
Q ss_pred cccchHHHHhcCC-eeeeecCcchhhhhcccCCcceEEEecCCCCcccHHHHHHhccccHHHHHHHHHHHHHHHHHhhCh
Q 016930 200 WSVSEKYILACDS-VTLIVTPKYYDFYTRGLMPLHHYWPINDHDKCRSIKFAVDWGNSHKKKAKAMGRAASKFIQDELKL 278 (380)
Q Consensus 200 ~S~rlk~lL~~~S-vvl~~~~~~~e~f~~~L~P~~HYvPv~~d~~~sdl~~~v~w~~~h~~~A~~IA~~g~~f~~~~L~~ 278 (380)
++..+---|+||- .|+.... ..-....+.....+++.. | ..++.+++..+.++++..++++++|++++ +.++.
T Consensus 87 ~~~~~~Eama~G~vPvi~~~~--~~~~~~~~~~~~~~~~~~-~--~~~l~~~i~~l~~~~~~~~~~~~~~~~~~-~~~s~ 160 (166)
T 3qhp_A 87 EAIACLEAISVGIVPVIANSP--LSATRQFALDERSLFEPN-N--AKDLSAKIDWWLENKLERERMQNEYAKSA-LNYTL 160 (166)
T ss_dssp CCHHHHHHHHTTCCEEEECCT--TCGGGGGCSSGGGEECTT-C--HHHHHHHHHHHHHCHHHHHHHHHHHHHHH-HHHC-
T ss_pred ccHHHHHHHhcCCCcEEeeCC--CCchhhhccCCceEEcCC-C--HHHHHHHHHHHHhCHHHHHHHHHHHHHHH-HHCCh
Confidence 3445556688998 7777221 111222333344454443 2 47999999999999999999999999998 55665
Q ss_pred hh
Q 016930 279 DY 280 (380)
Q Consensus 279 ~~ 280 (380)
+.
T Consensus 161 ~~ 162 (166)
T 3qhp_A 161 EN 162 (166)
T ss_dssp --
T ss_pred hh
Confidence 44
No 7
>2x6q_A Trehalose-synthase TRET; biosynthetic protein; 2.20A {Pyrococcus horikoshii} PDB: 2x6r_A 2xa1_A 2xa2_A* 2xa9_A* 2xmp_A*
Probab=72.05 E-value=15 Score=34.92 Aligned_cols=85 Identities=8% Similarity=0.028 Sum_probs=59.9
Q ss_pred ccccchHHHHhcCCeeeeecCcchhhhhcccCCcceEEEecCCCCcccHHHHHHhccccHHHHHHHHHHHHHHHHHhhCh
Q 016930 199 AWSVSEKYILACDSVTLIVTPKYYDFYTRGLMPLHHYWPINDHDKCRSIKFAVDWGNSHKKKAKAMGRAASKFIQDELKL 278 (380)
Q Consensus 199 ~~S~rlk~lL~~~Svvl~~~~~~~e~f~~~L~P~~HYvPv~~d~~~sdl~~~v~w~~~h~~~A~~IA~~g~~f~~~~L~~ 278 (380)
+++..+-=-|+||-.|+..+.. -..+.+.....=+-+. | .++|.++|..+.++++..++++++|++++.+.++.
T Consensus 327 ~~~~~~lEAma~G~PvI~~~~~---g~~e~i~~~~~g~l~~-d--~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~fs~ 400 (416)
T 2x6q_A 327 GFGLTVTEAMWKGKPVIGRAVG---GIKFQIVDGETGFLVR-D--ANEAVEVVLYLLKHPEVSKEMGAKAKERVRKNFII 400 (416)
T ss_dssp SSCHHHHHHHHTTCCEEEESCH---HHHHHCCBTTTEEEES-S--HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHTBH
T ss_pred CCccHHHHHHHcCCCEEEccCC---CChhheecCCCeEEEC-C--HHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHcCH
Confidence 3445566678899999987642 2223333333333333 4 47899999999999999999999999999988888
Q ss_pred hhHHHHHHHHH
Q 016930 279 DYVYDYMFHLL 289 (380)
Q Consensus 279 ~~~~~Y~~~LL 289 (380)
+.+..-+..++
T Consensus 401 ~~~~~~~~~~~ 411 (416)
T 2x6q_A 401 TKHMERYLDIL 411 (416)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 77666555444
No 8
>2bfw_A GLGA glycogen synthase; glycosyltransferase family 5 UDP/ADP-glucose-glycogen syntha rossman folds, transferase; 1.8A {Pyrococcus abyssi} SCOP: c.87.1.8
Probab=70.11 E-value=12 Score=31.38 Aligned_cols=70 Identities=4% Similarity=-0.067 Sum_probs=50.2
Q ss_pred cccchHHHHhcCCeeeeecCcchhhhhcccCCcceEEEecCCCCcccHHHHHHhccc-cHHHHHHHHHHHHHHHHH
Q 016930 200 WSVSEKYILACDSVTLIVTPKYYDFYTRGLMPLHHYWPINDHDKCRSIKFAVDWGNS-HKKKAKAMGRAASKFIQD 274 (380)
Q Consensus 200 ~S~rlk~lL~~~Svvl~~~~~~~e~f~~~L~P~~HYvPv~~d~~~sdl~~~v~w~~~-h~~~A~~IA~~g~~f~~~ 274 (380)
++..+---|+||-.|+..+.. .+.+.+ ...+-+-+..++ ..+|.++|..+.+ +++..++++++|++++++
T Consensus 128 ~~~~~~Ea~a~G~PvI~~~~~---~~~e~~-~~~~g~~~~~~~-~~~l~~~i~~l~~~~~~~~~~~~~~a~~~~~~ 198 (200)
T 2bfw_A 128 FGLVALEAMCLGAIPIASAVG---GLRDII-TNETGILVKAGD-PGELANAILKALELSRSDLSKFRENCKKRAMS 198 (200)
T ss_dssp SCHHHHHHHHTTCEEEEESCH---HHHHHC-CTTTCEEECTTC-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHCCCCEEEeCCC---ChHHHc-CCCceEEecCCC-HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Confidence 455566678899999988643 222333 344334444322 4789999999999 999999999999999876
No 9
>2r60_A Glycosyl transferase, group 1; rossmann-fold; 1.80A {Halothermothrix orenii} PDB: 2r66_A* 2r68_A*
Probab=69.62 E-value=14 Score=36.16 Aligned_cols=89 Identities=6% Similarity=-0.052 Sum_probs=60.4
Q ss_pred cccchHHHHhcCCeeeeecCcchhhhhcccCCcceEEEecCCCCcccHHHHHHhccccHHHHHHHHHHHHHHHHHhhChh
Q 016930 200 WSVSEKYILACDSVTLIVTPKYYDFYTRGLMPLHHYWPINDHDKCRSIKFAVDWGNSHKKKAKAMGRAASKFIQDELKLD 279 (380)
Q Consensus 200 ~S~rlk~lL~~~Svvl~~~~~~~e~f~~~L~P~~HYvPv~~d~~~sdl~~~v~w~~~h~~~A~~IA~~g~~f~~~~L~~~ 279 (380)
++..+-=-|+||-.|+..+.. -..+.+....+=+-+..++ ..+|.++|..+.++++..++++++|++++.+.++.+
T Consensus 371 ~~~~~lEAma~G~PvI~s~~~---g~~e~v~~~~~g~l~~~~d-~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~fs~~ 446 (499)
T 2r60_A 371 FGLAPVEAMASGLPAVVTRNG---GPAEILDGGKYGVLVDPED-PEDIARGLLKAFESEETWSAYQEKGKQRVEERYTWQ 446 (499)
T ss_dssp CCSHHHHHHHTTCCEEEESSB---HHHHHTGGGTSSEEECTTC-HHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHSBHH
T ss_pred CCcHHHHHHHcCCCEEEecCC---CHHHHhcCCceEEEeCCCC-HHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhCCHH
Confidence 444455668889888887642 1222333333322233222 478999999999999999999999999999989888
Q ss_pred hHHHHHHHHHHHH
Q 016930 280 YVYDYMFHLLNQY 292 (380)
Q Consensus 280 ~~~~Y~~~LL~eY 292 (380)
.+..-+..++.+.
T Consensus 447 ~~~~~~~~~y~~~ 459 (499)
T 2r60_A 447 ETARGYLEVIQEI 459 (499)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 7766555555443
No 10
>2iw1_A Lipopolysaccharide core biosynthesis protein RFAG; transferase, lipopolysaccharide biosynthesis, family GT-4, glycosyltransferase, LPS; HET: U2F; 1.5A {Escherichia coli} SCOP: c.87.1.8 PDB: 2iv7_A*
Probab=66.55 E-value=7.1 Score=36.22 Aligned_cols=88 Identities=8% Similarity=-0.010 Sum_probs=58.2
Q ss_pred ccccchHHHHhcCCeeeeecC-cchhhhhcccCCcceEEEec-CCCCcccHHHHHHhccccHHHHHHHHHHHHHHHHHhh
Q 016930 199 AWSVSEKYILACDSVTLIVTP-KYYDFYTRGLMPLHHYWPIN-DHDKCRSIKFAVDWGNSHKKKAKAMGRAASKFIQDEL 276 (380)
Q Consensus 199 ~~S~rlk~lL~~~Svvl~~~~-~~~e~f~~~L~P~~HYvPv~-~d~~~sdl~~~v~w~~~h~~~A~~IA~~g~~f~~~~L 276 (380)
+++..+--.|+||-.|+..+. ...|.. .....=+-+. .++ .+++.+++..+.++++..++++++|++++.++
T Consensus 282 ~~~~~~~Ea~a~G~Pvi~~~~~~~~e~i----~~~~~g~~~~~~~~-~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~- 355 (374)
T 2iw1_A 282 AAGIVLLEAITAGLPVLTTAVCGYAHYI----ADANCGTVIAEPFS-QEQLNEVLRKALTQSPLRMAWAENARHYADTQ- 355 (374)
T ss_dssp SSCHHHHHHHHHTCCEEEETTSTTTHHH----HHHTCEEEECSSCC-HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHS-
T ss_pred CcccHHHHHHHCCCCEEEecCCCchhhh----ccCCceEEeCCCCC-HHHHHHHHHHHHcChHHHHHHHHHHHHHHHHh-
Confidence 345556667888888888764 223332 2222222232 222 47899999999899999999999999999876
Q ss_pred ChhhHHHHHHHHHHHH
Q 016930 277 KLDYVYDYMFHLLNQY 292 (380)
Q Consensus 277 ~~~~~~~Y~~~LL~eY 292 (380)
+...+..-+..+|.+|
T Consensus 356 ~~~~~~~~~~~~l~~~ 371 (374)
T 2iw1_A 356 DLYSLPEKAADIITGG 371 (374)
T ss_dssp CCSCHHHHHHHHHHCC
T ss_pred hHHHHHHHHHHHHHHh
Confidence 6566666566666543
No 11
>3s28_A Sucrose synthase 1; glycosyltransferase, sucrose metabolism, sugar donar complex rossmann fold, GT-B fold, glycosyltansferase, UDP-glucose; HET: UDP LCN NHF; 2.80A {Arabidopsis thaliana} PDB: 3s27_A* 3s29_A*
Probab=55.12 E-value=24 Score=38.15 Aligned_cols=90 Identities=7% Similarity=0.015 Sum_probs=61.3
Q ss_pred cccchHHHHhcCCeeeeecCcchhhhhcccCCcceEEEecCCCCcccHHHHHHhcc----ccHHHHHHHHHHHHHHHHHh
Q 016930 200 WSVSEKYILACDSVTLIVTPKYYDFYTRGLMPLHHYWPINDHDKCRSIKFAVDWGN----SHKKKAKAMGRAASKFIQDE 275 (380)
Q Consensus 200 ~S~rlk~lL~~~Svvl~~~~~~~e~f~~~L~P~~HYvPv~~d~~~sdl~~~v~w~~----~h~~~A~~IA~~g~~f~~~~ 275 (380)
++..+---|+||-.|+..+.. -..+.+....+=+-+..++ ..++.++|..+. ++++..++++++|++++.+.
T Consensus 677 fglvllEAMA~G~PVIasd~G---G~~EiV~dg~~Gllv~p~D-~e~LA~aI~~lL~~Ll~d~~~~~~m~~~ar~~a~~~ 752 (816)
T 3s28_A 677 FGLTVVEAMTCGLPTFATCKG---GPAEIIVHGKSGFHIDPYH-GDQAADTLADFFTKCKEDPSHWDEISKGGLQRIEEK 752 (816)
T ss_dssp SCHHHHHHHHTTCCEEEESSB---THHHHCCBTTTBEEECTTS-HHHHHHHHHHHHHHHHHCTHHHHHHHHHHHHHHHHS
T ss_pred ccHHHHHHHHcCCCEEEeCCC---ChHHHHccCCcEEEeCCCC-HHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHh
Confidence 334455668899888887532 1223334444434444432 478888885544 89999999999999999999
Q ss_pred hChhhHHHHHHHHHHHHH
Q 016930 276 LKLDYVYDYMFHLLNQYS 293 (380)
Q Consensus 276 L~~~~~~~Y~~~LL~eYa 293 (380)
++.+.+..=+..+...|.
T Consensus 753 fSwe~~a~~ll~lY~~~g 770 (816)
T 3s28_A 753 YTWQIYSQRLLTLTGVYG 770 (816)
T ss_dssp CCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHh
Confidence 998887776666666654
No 12
>3fro_A GLGA glycogen synthase; glycosyltransferase family, UDP/ADP-glucose-glycogen synthas rossman folds, transferase; HET: NHF; 2.50A {Pyrococcus abyssi} SCOP: c.87.1.8 PDB: 2bis_A* 3l01_A*
Probab=48.82 E-value=26 Score=32.94 Aligned_cols=88 Identities=5% Similarity=-0.027 Sum_probs=58.0
Q ss_pred cccchHHHHhcCCeeeeecCcchhhhhcccCCcceEEEecCCCCcccHHHHHHhccc-cHHHHHHHHHHHHHHHHHhhCh
Q 016930 200 WSVSEKYILACDSVTLIVTPKYYDFYTRGLMPLHHYWPINDHDKCRSIKFAVDWGNS-HKKKAKAMGRAASKFIQDELKL 278 (380)
Q Consensus 200 ~S~rlk~lL~~~Svvl~~~~~~~e~f~~~L~P~~HYvPv~~d~~~sdl~~~v~w~~~-h~~~A~~IA~~g~~f~~~~L~~ 278 (380)
++..+---|+||-.|+..+.. -..+.+... .=+-+..++ ..++.++|..+.+ +++..++++++|++++ +.++.
T Consensus 343 ~~~~~~EAma~G~Pvi~s~~~---~~~e~~~~~-~g~~~~~~d-~~~la~~i~~ll~~~~~~~~~~~~~~~~~~-~~~s~ 416 (439)
T 3fro_A 343 FGLVALEAMCLGAIPIASAVG---GLRDIITNE-TGILVKAGD-PGELANAILKALELSRSDLSKFRENCKKRA-MSFSW 416 (439)
T ss_dssp SCHHHHHHHHTTCEEEEESST---HHHHHCCTT-TCEEECTTC-HHHHHHHHHHHHHHTTTTTHHHHHHHHHHH-HTSCH
T ss_pred ccHHHHHHHHCCCCeEEcCCC---CcceeEEcC-ceEEeCCCC-HHHHHHHHHHHHhcCHHHHHHHHHHHHHHH-hhCcH
Confidence 334455568899999887643 223333344 223344332 4789999998877 8999999999999999 66887
Q ss_pred hhHHHHHHHHHHHHHhhc
Q 016930 279 DYVYDYMFHLLNQYSKLL 296 (380)
Q Consensus 279 ~~~~~Y~~~LL~eYakl~ 296 (380)
+.+..= ++.-|.+++
T Consensus 417 ~~~~~~---~~~~~~~~~ 431 (439)
T 3fro_A 417 EKSAER---YVKAYTGSI 431 (439)
T ss_dssp HHHHHH---HHHHHHTCS
T ss_pred HHHHHH---HHHHHHHHH
Confidence 765543 344444544
No 13
>2jq3_A Apolipoprotein C-III; APOCIII, structure, dynamics, receptor, lipid binding protein; NMR {Homo sapiens}
Probab=30.32 E-value=27 Score=26.22 Aligned_cols=40 Identities=20% Similarity=0.456 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHhhChhhHHHHHHHHHHHHHhhcccCCCCCC
Q 016930 263 AMGRAASKFIQDELKLDYVYDYMFHLLNQYSKLLRYQPTVPP 304 (380)
Q Consensus 263 ~IA~~g~~f~~~~L~~~~~~~Y~~~LL~eYakl~~~~P~~~~ 304 (380)
.||.+|+.|+.+.++ .+.+||-.+...+..+....|...|
T Consensus 34 qVA~~AR~Wmtd~~s--SLkdYWSt~~gKfsgfwds~pe~~p 73 (79)
T 2jq3_A 34 QVAQQARGWVTDGFS--SLKDYWSTVKDKFSEFWDLDPEVRP 73 (79)
T ss_dssp GGHHHHHHHTTTTTT--HHHHHHHHHHHHTTGGGSCSSCCCH
T ss_pred HHHHHHHHHHhcchH--HHHHHHHHHhhhhhhhhhcCCCCCC
Confidence 588999999887775 6789999999999999998886643
No 14
>2dt7_B Splicing factor 3 subunit 1; structure genomics, SF3A120, SF3A60, SURP domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.217.1.1
Probab=23.24 E-value=72 Score=24.42 Aligned_cols=35 Identities=29% Similarity=0.598 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHH------------HhhChh-hHHHHHHHHHHHHHh
Q 016930 260 KAKAMGRAASKFIQ------------DELKLD-YVYDYMFHLLNQYSK 294 (380)
Q Consensus 260 ~A~~IA~~g~~f~~------------~~L~~~-~~~~Y~~~LL~eYak 294 (380)
.|+=+|++|.+|.. ++|.+. ....|..+++.+|.+
T Consensus 38 TA~FVArnG~~Fe~~l~~re~~NpqF~FL~p~h~~~~yy~~~v~~Y~~ 85 (85)
T 2dt7_B 38 TAQFVARNGRQFLTQLMQKEQRNYQFDFLRPQHSLFNYFTKLVEQYTK 85 (85)
T ss_dssp HHHHHHHHCHHHHHHHHHHTTTCGGGGGGSTTSTHHHHHHHHHHHHCC
T ss_pred HHHHHhhccHHHHHHHHHhcCCCCceeeCCCCCCchHHHHHHHHHHhC
Confidence 47777888887653 345543 578999999999964
No 15
>2qzs_A Glycogen synthase; glycosyl-transferase, GT-B fold, rossmann fold, closed-form, ADP and glucose binding, glycogen biosynthesis; HET: GLC ADP 250; 2.20A {Escherichia coli} PDB: 2r4t_A* 2r4u_A* 3guh_A* 3cx4_A* 3cop_A* 3d1j_A
Probab=23.10 E-value=1.8e+02 Score=27.78 Aligned_cols=82 Identities=12% Similarity=0.061 Sum_probs=49.7
Q ss_pred cccchHHHHhcCCeeeeecCcchhhhhcccCCc---------ceEEEecCCCCcccHHHHHHhcc---ccHHHHHHHHHH
Q 016930 200 WSVSEKYILACDSVTLIVTPKYYDFYTRGLMPL---------HHYWPINDHDKCRSIKFAVDWGN---SHKKKAKAMGRA 267 (380)
Q Consensus 200 ~S~rlk~lL~~~Svvl~~~~~~~e~f~~~L~P~---------~HYvPv~~d~~~sdl~~~v~w~~---~h~~~A~~IA~~ 267 (380)
++..+---|+||-.|+..+.. -..+.+... ..=+-+..++ ..+|.++|..+. ++++..++++++
T Consensus 379 ~g~~~lEAma~G~PvI~s~~g---g~~e~v~~~~~~~~~~~~~~G~l~~~~d-~~~la~~i~~ll~~~~~~~~~~~~~~~ 454 (485)
T 2qzs_A 379 CGLTQLYGLKYGTLPLVRRTG---GLADTVSDCSLENLADGVASGFVFEDSN-AWSLLRAIRRAFVLWSRPSLWRFVQRQ 454 (485)
T ss_dssp SCSHHHHHHHHTCEEEEESSH---HHHHHCCBCCHHHHHTTCCCBEEECSSS-HHHHHHHHHHHHHHHTSHHHHHHHHHH
T ss_pred CcHHHHHHHHCCCCEEECCCC---CccceeccCccccccccccceEEECCCC-HHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 334455567788888876532 222333333 2222233322 478999999887 789999999999
Q ss_pred HHHHHHHhhChhhHHHHHHHH
Q 016930 268 ASKFIQDELKLDYVYDYMFHL 288 (380)
Q Consensus 268 g~~f~~~~L~~~~~~~Y~~~L 288 (380)
|.+ +.++.+.+..-+..+
T Consensus 455 ~~~---~~fs~~~~~~~~~~l 472 (485)
T 2qzs_A 455 AMA---MDFSWQVAAKSYREL 472 (485)
T ss_dssp HHH---CCCCHHHHHHHHHHH
T ss_pred HHh---hcCCHHHHHHHHHHH
Confidence 864 566666554433333
No 16
>1rzu_A Glycogen synthase 1; glycosyl-transferase, GT-B fold, rossmann fold, ADP-binding, transferase; HET: ADP; 2.30A {Agrobacterium tumefaciens} SCOP: c.87.1.8 PDB: 1rzv_A
Probab=22.58 E-value=1.6e+02 Score=28.23 Aligned_cols=90 Identities=11% Similarity=0.096 Sum_probs=54.2
Q ss_pred ccchHHHHhcCCeeeeecCcchhhhhcccCCc---------ceEEEecCCCCcccHHHHHHhcc---ccHHHHHHHHHHH
Q 016930 201 SVSEKYILACDSVTLIVTPKYYDFYTRGLMPL---------HHYWPINDHDKCRSIKFAVDWGN---SHKKKAKAMGRAA 268 (380)
Q Consensus 201 S~rlk~lL~~~Svvl~~~~~~~e~f~~~L~P~---------~HYvPv~~d~~~sdl~~~v~w~~---~h~~~A~~IA~~g 268 (380)
+..+---|+||-.|+..+.. -..+.+... .+=+-+..++ .++|.++|..+. ++++..++++++|
T Consensus 379 ~~~~lEAma~G~PvI~s~~g---g~~e~v~~~~~~~~~~~~~~G~l~~~~d-~~~la~~i~~ll~~~~~~~~~~~~~~~~ 454 (485)
T 1rzu_A 379 GLTQLYALRYGCIPVVARTG---GLADTVIDANHAALASKAATGVQFSPVT-LDGLKQAIRRTVRYYHDPKLWTQMQKLG 454 (485)
T ss_dssp CSHHHHHHHHTCEEEEESSH---HHHHHCCBCCHHHHHTTCCCBEEESSCS-HHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred CHHHHHHHHCCCCEEEeCCC---ChhheecccccccccccCCcceEeCCCC-HHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 34455667788888876532 223334443 3323334322 478999999887 7999999999998
Q ss_pred HHHHHHhhChhhHHHHHHHHHHHHHhhcccCC
Q 016930 269 SKFIQDELKLDYVYDYMFHLLNQYSKLLRYQP 300 (380)
Q Consensus 269 ~~f~~~~L~~~~~~~Y~~~LL~eYakl~~~~P 300 (380)
.+ +.++.+.+.. +++.-|.+++.-++
T Consensus 455 ~~---~~fs~~~~~~---~~~~~y~~~~~~~~ 480 (485)
T 1rzu_A 455 MK---SDVSWEKSAG---LYAALYSQLISKGH 480 (485)
T ss_dssp HT---CCCBHHHHHH---HHHHHHHHHTC---
T ss_pred HH---HhCChHHHHH---HHHHHHHHhhCCCC
Confidence 64 5556555443 45555666665544
No 17
>1hnr_A H-NS; histone-like protein H1, DNA-binding protein; NMR {Escherichia coli} SCOP: a.155.1.1 PDB: 1hns_A
Probab=22.15 E-value=25 Score=24.11 Aligned_cols=17 Identities=12% Similarity=0.452 Sum_probs=12.5
Q ss_pred cccceeeeecCc--ccccch
Q 016930 187 CRDRFKIYIEGS--AWSVSE 204 (380)
Q Consensus 187 ~~yKYli~ieG~--~~S~rl 204 (380)
.+||| ++-+|. +||||-
T Consensus 5 ~KYry-~dp~G~~~TWtGrG 23 (47)
T 1hnr_A 5 AKYSY-VDENGETKTWTGQG 23 (47)
T ss_dssp CCBEE-CCSSCCCEECCTTS
T ss_pred Cceee-cCCCCCcccccCCC
Confidence 46777 456698 999984
No 18
>2auh_B Growth factor receptor-bound protein 14; tyrosine kinase, BPS region, transferase/signaling protein complex; HET: PTR; 3.20A {Homo sapiens}
Probab=20.10 E-value=66 Score=22.97 Aligned_cols=19 Identities=5% Similarity=-0.013 Sum_probs=16.2
Q ss_pred ccccHHHHHHHH-HHHHHHH
Q 016930 254 GNSHKKKAKAMG-RAASKFI 272 (380)
Q Consensus 254 ~~~h~~~A~~IA-~~g~~f~ 272 (380)
..+||.||+.|| ++|+.|-
T Consensus 28 vIenP~Ea~s~a~eeg~~Wr 47 (59)
T 2auh_B 28 VIENPTEALSVAVEEGLAWR 47 (59)
T ss_dssp BCCCHHHHHHHHHHHHHHHH
T ss_pred eecChHHHHHHHHHhhhhhc
Confidence 468999999999 8888884
Done!