Query 016930
Match_columns 380
No_of_seqs 264 out of 820
Neff 6.5
Searched_HMMs 13730
Date Mon Mar 25 06:09:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016930.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/016930hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2iw1a1 c.87.1.8 (A:2-371) Lip 47.1 11 0.00078 32.0 5.2 72 199-275 281-354 (370)
2 d2bfwa1 c.87.1.8 (A:218-413) G 44.4 17 0.0013 28.8 5.9 71 199-274 123-194 (196)
3 d2bisa1 c.87.1.8 (A:1-437) Gly 37.1 31 0.0022 30.1 6.9 88 200-296 341-429 (437)
4 d2dt7b1 a.217.1.1 (B:134-217) 18.7 41 0.003 23.8 3.2 35 260-294 37-84 (84)
5 d1veha_ d.52.8.1 (A:) HIRA-int 17.5 49 0.0036 23.8 3.4 48 13-63 40-89 (92)
6 d2f9fa1 c.87.1.8 (A:2-167) Fir 15.9 63 0.0046 24.5 4.0 66 199-270 98-165 (166)
7 d1no1a_ a.179.1.1 (A:) Repliso 15.3 32 0.0023 22.5 1.6 18 287-304 47-64 (67)
8 d2nxoa1 c.94.1.1 (A:5-281) Hyp 13.4 32 0.0024 28.7 1.6 23 245-267 203-225 (277)
9 d1s16a1 d.14.1.3 (A:1217-1383) 12.5 80 0.0059 25.1 3.8 25 252-276 140-164 (167)
10 d1th5a1 d.52.8.1 (A:154-226) N 12.1 95 0.0069 21.2 3.6 37 13-55 30-67 (73)
No 1
>d2iw1a1 c.87.1.8 (A:2-371) Lipopolysaccharide core biosynthesis protein RfaG {Escherichia coli [TaxId: 562]}
Probab=47.07 E-value=11 Score=32.01 Aligned_cols=72 Identities=7% Similarity=0.001 Sum_probs=48.6
Q ss_pred ccccchHHHHhcCCeeeeecCc-chhhhhcccCCcce-EEEecCCCCcccHHHHHHhccccHHHHHHHHHHHHHHHHHh
Q 016930 199 AWSVSEKYILACDSVTLIVTPK-YYDFYTRGLMPLHH-YWPINDHDKCRSIKFAVDWGNSHKKKAKAMGRAASKFIQDE 275 (380)
Q Consensus 199 ~~S~rlk~lL~~~Svvl~~~~~-~~e~f~~~L~P~~H-YvPv~~d~~~sdl~~~v~w~~~h~~~A~~IA~~g~~f~~~~ 275 (380)
+++..+---|+||-.|+..+.. ..|. +....+ ++-+...+ -.+|.++|.-+.++++..++++++|+++++++
T Consensus 281 ~~~~~~~EAma~G~PvI~s~~~g~~e~----i~~~~~G~l~~~~~d-~~~la~~i~~ll~d~~~~~~~~~~ar~~~~~~ 354 (370)
T d2iw1a1 281 AAGIVLLEAITAGLPVLTTAVCGYAHY----IADANCGTVIAEPFS-QEQLNEVLRKALTQSPLRMAWAENARHYADTQ 354 (370)
T ss_dssp SSCHHHHHHHHHTCCEEEETTSTTTHH----HHHHTCEEEECSSCC-HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHS
T ss_pred cccceeeecccCCeeEEEeCCCChHHH----hcCCCceEEEcCCCC-HHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHh
Confidence 3445556678899888876532 2222 333344 22223222 47899999999999999999999999999764
No 2
>d2bfwa1 c.87.1.8 (A:218-413) Glycogen synthase 1, GlgA {Pyrococcus abyssi [TaxId: 29292]}
Probab=44.41 E-value=17 Score=28.80 Aligned_cols=71 Identities=4% Similarity=-0.053 Sum_probs=48.2
Q ss_pred ccccchHHHHhcCCeeeeecCcchhhhhcccCCcceEEEecCCCCcccHHHHHHhcc-ccHHHHHHHHHHHHHHHHH
Q 016930 199 AWSVSEKYILACDSVTLIVTPKYYDFYTRGLMPLHHYWPINDHDKCRSIKFAVDWGN-SHKKKAKAMGRAASKFIQD 274 (380)
Q Consensus 199 ~~S~rlk~lL~~~Svvl~~~~~~~e~f~~~L~P~~HYvPv~~d~~~sdl~~~v~w~~-~h~~~A~~IA~~g~~f~~~ 274 (380)
+++..+.--|+||-+|+...... ..+.+.....|+ +..++ ..++.++|..+. .+++..++|+++|++.+.+
T Consensus 123 ~~~~~~~Eam~~G~pvI~~~~~~---~~e~i~~~~g~~-~~~~~-~~~l~~~i~~~l~~~~~~~~~~~~~a~~~a~~ 194 (196)
T d2bfwa1 123 PFGLVALEAMCLGAIPIASAVGG---LRDIITNETGIL-VKAGD-PGELANAILKALELSRSDLSKFRENCKKRAMS 194 (196)
T ss_dssp SSCHHHHHHHHTTCEEEEESCHH---HHHHCCTTTCEE-ECTTC-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
T ss_pred cccccchhhhhcCceeeecCCCc---cceeecCCceee-ECCCC-HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence 46677778899999999987432 222232223343 44433 478888887654 4678899999999998865
No 3
>d2bisa1 c.87.1.8 (A:1-437) Glycogen synthase 1, GlgA {Pyrococcus abyssi [TaxId: 29292]}
Probab=37.10 E-value=31 Score=30.06 Aligned_cols=88 Identities=5% Similarity=0.021 Sum_probs=55.5
Q ss_pred cccchHHHHhcCCeeeeecCcchhhhhcccCCcceEEEecCCCCcccHHHHHHhc-cccHHHHHHHHHHHHHHHHHhhCh
Q 016930 200 WSVSEKYILACDSVTLIVTPKYYDFYTRGLMPLHHYWPINDHDKCRSIKFAVDWG-NSHKKKAKAMGRAASKFIQDELKL 278 (380)
Q Consensus 200 ~S~rlk~lL~~~Svvl~~~~~~~e~f~~~L~P~~HYvPv~~d~~~sdl~~~v~w~-~~h~~~A~~IA~~g~~f~~~~L~~ 278 (380)
++..+.--|+||-.|+..+..- ..+.+.....|+ +...+ -.+|.++|..+ ..+++..++++++|++.++ .++.
T Consensus 341 ~~~~~~Eama~G~Pvi~~~~g~---~~e~i~~~~G~~-~~~~d-~~~la~~i~~ll~~~~~~~~~~~~~~~~~~~-~~s~ 414 (437)
T d2bisa1 341 FGLVALEAMCLGAIPIASAVGG---LRDIITNETGIL-VKAGD-PGELANAILKALELSRSDLSKFRENCKKRAM-SFSW 414 (437)
T ss_dssp SCHHHHHHHTTTCEEEEESCTT---HHHHCCTTTCEE-ECTTC-HHHHHHHHHHHHTTTTSCTHHHHHHHHHHHH-HSCH
T ss_pred cchHHHHHHHCCCCEEEeCCCC---cHHhEECCcEEE-ECCCC-HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH-hCCH
Confidence 3344555688999999775432 122233223443 33322 47899999765 4577889999999999885 4787
Q ss_pred hhHHHHHHHHHHHHHhhc
Q 016930 279 DYVYDYMFHLLNQYSKLL 296 (380)
Q Consensus 279 ~~~~~Y~~~LL~eYakl~ 296 (380)
+.+.. +++.-|.+++
T Consensus 415 ~~~a~---~~~~iY~~~i 429 (437)
T d2bisa1 415 EKSAE---RYVKAYTGSI 429 (437)
T ss_dssp HHHHH---HHHHHHHTCS
T ss_pred HHHHH---HHHHHHHHHH
Confidence 76653 4445566655
No 4
>d2dt7b1 a.217.1.1 (B:134-217) Splicing factor 3 subunit 1, SF3A1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=18.74 E-value=41 Score=23.80 Aligned_cols=35 Identities=29% Similarity=0.594 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHH------------HhhCh-hhHHHHHHHHHHHHHh
Q 016930 260 KAKAMGRAASKFIQ------------DELKL-DYVYDYMFHLLNQYSK 294 (380)
Q Consensus 260 ~A~~IA~~g~~f~~------------~~L~~-~~~~~Y~~~LL~eYak 294 (380)
.|+=+|++|..|-. .+|.+ +....|+.++|.+|++
T Consensus 37 tA~fVa~~G~~fe~~l~~~~~~Np~F~FL~~~~~~~~yY~~lv~~Y~~ 84 (84)
T d2dt7b1 37 TAQFVARNGRQFLTQLMQKEQRNYQFDFLRPQHSLFNYFTKLVEQYTK 84 (84)
T ss_dssp HHHHHHHHCHHHHHHHHHHTTTCGGGGGGSTTSTHHHHHHHHHHHHCC
T ss_pred HHHHHHhcCHHHHHHHHHcccCCCceeccCCCCcCcHHHHHHHHHHhC
Confidence 36666777766643 24543 3558899999999974
No 5
>d1veha_ d.52.8.1 (A:) HIRA-interacting protein 5, HIRIP5 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=17.55 E-value=49 Score=23.83 Aligned_cols=48 Identities=17% Similarity=0.130 Sum_probs=33.8
Q ss_pred EEEECCEEEEEccccccCC-cchhHH-HHHHHHHHhCCCCCCCeEEEEecCcc
Q 016930 13 LVIVKGKAYVETYTKAFQS-RDTFTL-WGILQLLRRYPGRIPDLDLMFDCVDW 63 (380)
Q Consensus 13 ~~I~~G~lYv~~~~~~~~~-R~~ft~-~~il~ll~~~p~~lPDvef~~n~~D~ 63 (380)
+-|.||.|||.-.+.|-+- -...|+ .+|...|+. .+|++.-+.+..|.
T Consensus 40 v~v~~g~V~v~l~GaC~gCp~s~~Tlk~~Ie~~L~~---~vpev~~V~~v~~~ 89 (92)
T d1veha_ 40 RGFEDGIVRLKLQGSCTSCPSSIITLKSGIQNMLQF---YIPEVEGVEQVSGP 89 (92)
T ss_dssp EEEETTEEEECCCCCCCCCHHHHHHTHHHHHHHHHH---HCSSCCCEEECSCS
T ss_pred EEeeCCeEEEEEccCCCCChhHHHHHHHHHHHHHHH---HCCCcceEEEcCCC
Confidence 4578999999887765331 112343 678888887 47999888888774
No 6
>d2f9fa1 c.87.1.8 (A:2-167) First mannosyl transferase WbaZ {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=15.93 E-value=63 Score=24.47 Aligned_cols=66 Identities=15% Similarity=0.151 Sum_probs=40.8
Q ss_pred ccccchHHHHhcCCeeeeecCcchhhhhcccCCcce-EEEecCCCCcccHHHHHHhccccHHH-HHHHHHHHHH
Q 016930 199 AWSVSEKYILACDSVTLIVTPKYYDFYTRGLMPLHH-YWPINDHDKCRSIKFAVDWGNSHKKK-AKAMGRAASK 270 (380)
Q Consensus 199 ~~S~rlk~lL~~~Svvl~~~~~~~e~f~~~L~P~~H-YvPv~~d~~~sdl~~~v~w~~~h~~~-A~~IA~~g~~ 270 (380)
+++..+---|+||-.|+..+... +.+.+..... |+ +..| .+++.+++..+.+|+++ .+.+.++|++
T Consensus 98 ~~~~~~~Ea~~~g~pvi~s~~~~---~~e~i~~~~~g~~-~~~d--~~~~~~~i~~l~~~~~~~~~~~~~~a~~ 165 (166)
T d2f9fa1 98 DFGLTPIEAMASGKPVIAVNEGG---FKETVINEKTGYL-VNAD--VNEIIDAMKKVSKNPDKFKKDCFRRAKE 165 (166)
T ss_dssp CSCHHHHHHHHTTCCEEEESSHH---HHHHCCBTTTEEE-ECSC--HHHHHHHHHHHHHCTTTTHHHHHHHHHT
T ss_pred cccccccccccccccceeecCCc---ceeeecCCccccc-CCCC--HHHHHHHHHHHHhCHHHHHHHHHHHHhC
Confidence 34555667788999999887542 2223444333 32 3344 47899999998888754 3445555554
No 7
>d1no1a_ a.179.1.1 (A:) Replisome organizer (g39p helicase loader/inhibitor protein) {Bacteriophage Spp1 [TaxId: 10724]}
Probab=15.25 E-value=32 Score=22.53 Aligned_cols=18 Identities=33% Similarity=0.654 Sum_probs=15.0
Q ss_pred HHHHHHHhhcccCCCCCC
Q 016930 287 HLLNQYSKLLRYQPTVPP 304 (380)
Q Consensus 287 ~LL~eYakl~~~~P~~~~ 304 (380)
.-|+.||++-+|.|++++
T Consensus 47 nnltdyakvnkfpptvsd 64 (67)
T d1no1a_ 47 NNLTDYAKVNKFPPTVSD 64 (67)
T ss_dssp HHHHHHHHHCSSCCCGGG
T ss_pred HHhHHHHHHccCCCcHHH
Confidence 456899999999998875
No 8
>d2nxoa1 c.94.1.1 (A:5-281) Hypothetical protein SCo4506 {Streptomyces coelicolor [TaxId: 1902]}
Probab=13.39 E-value=32 Score=28.70 Aligned_cols=23 Identities=4% Similarity=-0.035 Sum_probs=17.7
Q ss_pred ccHHHHHHhccccHHHHHHHHHH
Q 016930 245 RSIKFAVDWGNSHKKKAKAMGRA 267 (380)
Q Consensus 245 sdl~~~v~w~~~h~~~A~~IA~~ 267 (380)
.-+.++++|+++||++|.+|+.+
T Consensus 203 ~a~~~a~~~~~~~p~ea~~~~a~ 225 (277)
T d2nxoa1 203 EAFLASRNLSLEEVEKVAEQAAR 225 (277)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCHHHHHHHHHH
Confidence 34566788999999999887654
No 9
>d1s16a1 d.14.1.3 (A:1217-1383) Topoisomerase IV subunit B {Escherichia coli [TaxId: 562]}
Probab=12.48 E-value=80 Score=25.06 Aligned_cols=25 Identities=20% Similarity=0.248 Sum_probs=20.7
Q ss_pred HhccccHHHHHHHHHHHHHHHHHhh
Q 016930 252 DWGNSHKKKAKAMGRAASKFIQDEL 276 (380)
Q Consensus 252 ~w~~~h~~~A~~IA~~g~~f~~~~L 276 (380)
.|+++||+.|+.|.+.+..-++..+
T Consensus 140 ~~l~~np~~a~~i~~k~i~~~~~R~ 164 (167)
T d1s16a1 140 LWLNQNVQAAELLAEMAISSAQRRM 164 (167)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCHHHHHHHHHHHHHHHHHHH
Confidence 6999999999999998887665443
No 10
>d1th5a1 d.52.8.1 (A:154-226) NifU-like protein 1, NIFUL1 {Rice (Oryza sativa) [TaxId: 4530]}
Probab=12.14 E-value=95 Score=21.17 Aligned_cols=37 Identities=24% Similarity=0.187 Sum_probs=26.7
Q ss_pred EEEECCEEEEEccccccCCcchhHH-HHHHHHHHhCCCCCCCeE
Q 016930 13 LVIVKGKAYVETYTKAFQSRDTFTL-WGILQLLRRYPGRIPDLD 55 (380)
Q Consensus 13 ~~I~~G~lYv~~~~~~~~~R~~ft~-~~il~ll~~~p~~lPDve 55 (380)
+-|.||.+|+.-.+.|.+- .|+ .||...|+.+ +|++.
T Consensus 30 v~i~~~~v~v~l~GaC~gC---~Tl~~gIe~~L~~~---iPei~ 67 (73)
T d1th5a1 30 LMIKGPIVKVRLTGPAAVV---RTVRIAVSKKLREK---IPSIQ 67 (73)
T ss_dssp CEEETTEEEECCCSSSSSS---SSHHHHHHHHHHHH---CTTCS
T ss_pred EEecCCEEEEEecCCCccc---chHHHHHHHHHHHH---CCCcc
Confidence 4578999999887766443 355 6888888873 67764
Done!