Query 016931
Match_columns 380
No_of_seqs 398 out of 1670
Neff 7.0
Searched_HMMs 29240
Date Mon Mar 25 06:09:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016931.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016931hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3s8i_A Protein DDI1 homolog 1; 100.0 5.3E-37 1.8E-41 267.5 14.7 136 185-320 13-148 (148)
2 2i1a_A DNA damage-inducible pr 100.0 5.7E-36 2E-40 260.5 14.8 148 171-321 1-148 (148)
3 3plu_A Ubiquitin-like modifier 99.7 1.1E-17 3.6E-22 133.2 8.7 70 1-70 22-91 (93)
4 3phx_B Ubiquitin-like protein 99.7 3.1E-17 1.1E-21 126.9 9.5 72 1-72 5-76 (79)
5 2kk8_A Uncharacterized protein 99.7 2.5E-17 8.6E-22 129.6 9.1 72 1-72 11-83 (84)
6 1uel_A HHR23B, UV excision rep 99.7 1.2E-16 4.2E-21 128.4 12.0 74 1-74 1-77 (95)
7 3m62_B UV excision repair prot 99.7 3E-17 1E-21 134.8 8.2 75 1-75 2-76 (106)
8 4dwf_A HLA-B-associated transc 99.7 6E-17 2.1E-21 128.5 9.5 74 1-75 6-79 (90)
9 1uh6_A Ubiquitin-like 5; beta- 99.7 2.9E-17 1E-21 132.9 7.5 71 1-71 29-99 (100)
10 4fbj_B NEDD8; effector-HOST ta 99.7 7.9E-17 2.7E-21 127.7 9.8 72 1-72 1-72 (88)
11 2wyq_A HHR23A, UV excision rep 99.7 1E-16 3.5E-21 125.5 9.9 75 1-75 6-83 (85)
12 3v6c_B Ubiquitin; structural g 99.7 1.4E-16 4.8E-21 126.8 9.5 72 1-72 18-89 (91)
13 1ndd_A NEDD8, protein (ubiquit 99.7 2.3E-16 7.8E-21 120.4 10.2 72 1-72 1-72 (76)
14 2faz_A Ubiquitin-like containi 99.7 1.8E-16 6.1E-21 122.2 9.4 72 1-72 3-76 (78)
15 2bwf_A Ubiquitin-like protein 99.7 2.1E-16 7.1E-21 121.2 9.7 72 1-73 5-76 (77)
16 3a9j_A Ubiquitin; protein comp 99.7 3.8E-16 1.3E-20 119.1 10.3 72 1-72 1-72 (76)
17 2lxa_A Ubiquitin-like protein 99.7 9.5E-17 3.3E-21 127.1 6.9 73 1-73 2-78 (87)
18 4eew_A Large proline-rich prot 99.7 2.3E-16 7.8E-21 124.6 9.1 70 1-71 18-87 (88)
19 3dbh_I NEDD8; cell cycle, acti 99.7 2.8E-16 9.4E-21 123.8 8.9 72 1-72 13-84 (88)
20 4a20_A Ubiquitin-like protein 99.7 2.4E-16 8.3E-21 127.5 8.7 73 1-73 20-96 (98)
21 3k9o_B Ubiquitin, UBB+1; E2-25 99.7 5.2E-16 1.8E-20 124.4 10.3 72 1-72 2-73 (96)
22 3n3k_B Ubiquitin; hydrolase, p 99.6 3.5E-16 1.2E-20 122.2 8.9 72 1-72 4-75 (85)
23 4hcn_B Polyubiquitin, ubiquiti 99.6 4.7E-16 1.6E-20 125.7 9.9 72 1-72 23-94 (98)
24 2hj8_A Interferon-induced 17 k 99.6 2.5E-16 8.5E-21 124.7 8.1 72 1-72 5-76 (88)
25 2dzi_A Ubiquitin-like protein 99.6 4.8E-16 1.6E-20 120.4 9.3 72 1-72 8-79 (81)
26 1sif_A Ubiquitin; hydrophobic 99.6 6.2E-16 2.1E-20 122.5 9.8 72 1-72 10-81 (88)
27 3mtn_B UBA80, ubcep1, ubiquiti 99.6 6.1E-16 2.1E-20 120.8 9.4 72 1-72 4-75 (85)
28 2uyz_B Small ubiquitin-related 99.6 3.9E-16 1.3E-20 120.7 8.2 72 1-72 4-75 (79)
29 1ttn_A DC-UBP, dendritic cell- 99.6 4.6E-16 1.6E-20 127.6 8.9 74 1-74 24-97 (106)
30 1wh3_A 59 kDa 2'-5'-oligoadeny 99.6 6.5E-16 2.2E-20 121.5 9.2 72 1-72 8-79 (87)
31 1wy8_A NP95-like ring finger p 99.6 1.3E-15 4.3E-20 120.5 10.6 72 1-72 8-81 (89)
32 1v5o_A 1700011N24RIK protein; 99.6 8.3E-16 2.9E-20 125.2 9.6 73 1-73 8-85 (102)
33 1wju_A NEDD8 ultimate buster-1 99.6 6.7E-16 2.3E-20 125.0 8.8 73 3-75 18-94 (100)
34 1yx5_B Ubiquitin; proteasome, 99.6 1.6E-15 5.4E-20 122.4 10.3 72 1-72 1-72 (98)
35 2kan_A Uncharacterized protein 99.6 1.1E-15 3.9E-20 122.6 9.3 72 1-73 16-88 (94)
36 2klc_A Ubiquilin-1; ubiquitin- 99.6 1.9E-15 6.5E-20 122.9 10.3 73 1-74 26-98 (101)
37 1wgd_A Homocysteine-responsive 99.6 2E-15 6.7E-20 120.7 10.0 72 1-72 8-85 (93)
38 1wyw_B Ubiquitin-like protein 99.6 1.2E-15 4E-20 123.2 8.4 72 1-72 22-93 (97)
39 1yqb_A Ubiquilin 3; structural 99.6 1.7E-15 5.9E-20 123.0 9.0 74 1-75 23-96 (100)
40 1v2y_A 3300001G02RIK protein; 99.6 7.9E-16 2.7E-20 125.9 6.4 72 1-72 8-95 (105)
41 3b1l_X E3 ubiquitin-protein li 99.4 7E-17 2.4E-21 123.8 0.0 72 1-72 1-72 (76)
42 1wx8_A Riken cDNA 4931431F19; 99.6 1.7E-15 5.7E-20 121.7 8.0 72 1-73 18-89 (96)
43 1wx7_A Ubiquilin 3; ubiquitin- 99.6 4.4E-15 1.5E-19 121.6 10.7 72 1-73 18-89 (106)
44 3vdz_A Ubiquitin-40S ribosomal 99.6 2.8E-15 9.5E-20 124.0 9.5 72 1-72 36-107 (111)
45 2l7r_A Ubiquitin-like protein 99.6 2.5E-15 8.6E-20 120.3 8.9 70 1-72 20-89 (93)
46 1v5t_A 8430435I17RIK protein; 99.6 2.6E-15 8.9E-20 119.5 8.5 73 1-74 8-84 (90)
47 1wxv_A BAG-family molecular ch 99.6 5.2E-15 1.8E-19 117.9 9.8 74 1-75 8-87 (92)
48 1x1m_A Ubiquitin-like protein 99.6 4.9E-15 1.7E-19 121.7 9.3 75 1-75 13-102 (107)
49 1wia_A Hypothetical ubiquitin- 99.6 5.9E-15 2E-19 118.3 9.4 72 1-75 8-80 (95)
50 2daf_A FLJ35834 protein; hypot 99.6 4.5E-15 1.6E-19 122.5 8.7 72 2-73 17-89 (118)
51 3m63_B Ubiquitin domain-contai 99.6 1.5E-15 5E-20 123.6 5.7 71 1-72 29-99 (101)
52 3l0w_B Monoubiquitinated proli 99.6 9E-15 3.1E-19 129.8 10.7 72 1-72 1-72 (169)
53 2kdb_A Homocysteine-responsive 99.6 3.2E-15 1.1E-19 121.2 7.1 70 1-70 24-99 (99)
54 1j8c_A Ubiquitin-like protein 99.6 8.1E-15 2.8E-19 123.8 9.9 72 1-73 33-104 (125)
55 1oqy_A HHR23A, UV excision rep 99.6 1E-14 3.5E-19 144.0 11.8 71 1-71 8-82 (368)
56 1wgg_A Ubiquitin carboxyl-term 99.6 4.8E-15 1.6E-19 119.5 7.5 72 1-74 8-80 (96)
57 1v86_A DNA segment, CHR 7, way 99.6 6.4E-15 2.2E-19 118.4 8.0 72 1-74 18-89 (95)
58 2ojr_A Ubiquitin; lanthide-bin 99.6 1.3E-14 4.3E-19 120.0 9.9 72 1-72 36-107 (111)
59 2kd0_A LRR repeats and ubiquit 99.6 1.4E-14 4.8E-19 114.0 9.2 70 4-73 15-84 (85)
60 1wgh_A Ubiquitin-like 3, HCG-1 99.6 1.6E-14 5.4E-19 120.2 10.0 75 1-75 17-101 (116)
61 2fnj_B Transcription elongatio 99.5 6.7E-15 2.3E-19 122.4 7.6 72 1-72 1-80 (118)
62 4dbg_A Ranbp-type and C3HC4-ty 99.5 1.4E-14 4.7E-19 118.2 9.3 72 1-72 25-99 (105)
63 4ajy_B Transcription elongatio 99.5 9.7E-15 3.3E-19 121.1 7.8 72 1-72 1-80 (118)
64 2kdi_A Ubiquitin, vacuolar pro 99.5 2.7E-14 9.3E-19 118.6 10.1 72 1-72 10-81 (114)
65 3rt3_B Ubiquitin-like protein 99.5 1.9E-14 6.6E-19 125.8 9.5 72 1-72 82-153 (159)
66 1we6_A Splicing factor, putati 99.5 1.4E-14 4.6E-19 119.7 7.9 72 1-72 28-103 (111)
67 3rt3_B Ubiquitin-like protein 99.5 3.2E-14 1.1E-18 124.3 10.5 72 1-72 3-76 (159)
68 2gow_A HCG-1 protein, ubiquiti 99.5 2.4E-14 8.2E-19 120.7 9.0 74 1-74 18-101 (125)
69 3q3f_A Ribonuclease/ubiquitin 99.5 2.1E-14 7.1E-19 129.3 8.8 72 1-72 106-177 (189)
70 4b6w_A Tubulin-specific chaper 99.5 1.6E-14 5.4E-19 114.1 7.1 72 2-73 4-84 (86)
71 3b08_A Polyubiquitin-C, ubiqui 99.5 5.9E-14 2E-18 121.0 10.6 73 1-73 1-73 (152)
72 3u5e_m 60S ribosomal protein L 99.5 1.4E-15 4.6E-20 129.0 0.0 72 1-72 1-72 (128)
73 3u30_A Ubiquitin, linear DI-ub 99.5 4.1E-14 1.4E-18 125.4 9.4 72 1-72 21-92 (172)
74 1se9_A Ubiquitin family; ubiqu 99.5 9.7E-14 3.3E-18 116.7 9.0 72 1-72 17-102 (126)
75 1wf9_A NPL4 family protein; be 99.5 1.1E-13 3.6E-18 113.7 8.5 74 1-75 8-97 (107)
76 2dzj_A Synaptic glycoprotein S 99.5 5.3E-14 1.8E-18 111.6 6.3 70 1-70 11-86 (88)
77 2kjr_A CG11242; UBL, ubiquitin 99.5 1.1E-13 3.8E-18 111.3 8.0 70 2-71 17-94 (95)
78 3u5c_f 40S ribosomal protein S 99.5 5.5E-15 1.9E-19 128.8 0.0 71 1-71 1-71 (152)
79 3b08_A Polyubiquitin-C, ubiqui 99.4 2.8E-13 9.6E-18 116.8 10.3 72 1-72 77-148 (152)
80 2kj6_A Tubulin folding cofacto 99.4 2E-13 7E-18 110.1 8.7 71 2-72 16-95 (97)
81 3u30_A Ubiquitin, linear DI-ub 99.4 1.7E-13 5.7E-18 121.5 8.9 72 1-72 97-168 (172)
82 2dzm_A FAS-associated factor 1 99.4 1.1E-13 3.9E-18 112.1 7.1 71 1-72 9-81 (100)
83 1we7_A SF3A1 protein; structur 99.4 1.7E-13 5.8E-18 113.8 8.4 71 2-72 27-107 (115)
84 1v6e_A Cytoskeleton-associated 99.4 3.3E-13 1.1E-17 108.3 8.7 73 2-74 9-89 (95)
85 3ai5_A Yeast enhanced green fl 99.4 1E-12 3.4E-17 126.5 9.4 72 1-72 234-305 (307)
86 2kzr_A Ubiquitin thioesterase 99.3 1.2E-12 4.2E-17 103.0 6.6 72 1-73 1-78 (86)
87 1t0y_A Tubulin folding cofacto 99.3 2.8E-12 9.5E-17 107.7 8.5 72 2-73 8-87 (122)
88 2xzm_9 RPS31E; ribosome, trans 99.3 4.7E-13 1.6E-17 120.0 0.0 66 1-71 1-66 (189)
89 3shq_A UBLCP1; phosphatase, hy 99.3 6.4E-12 2.2E-16 122.1 7.8 73 1-74 6-81 (320)
90 3slz_A GAG-Pro-POL polyprotein 99.2 2E-11 6.7E-16 103.4 8.3 104 192-304 18-122 (132)
91 2io1_B Small ubiquitin-related 99.2 2.8E-11 9.4E-16 97.0 8.5 72 1-72 8-79 (94)
92 1fmb_A EIAV protease; hydrolas 99.2 7.7E-11 2.6E-15 95.9 10.3 97 195-297 7-104 (104)
93 1wm3_A Ubiquitin-like protein 99.2 5.8E-11 2E-15 90.3 9.0 70 1-70 2-71 (72)
94 3a4r_A Nfatc2-interacting prot 99.1 1.7E-10 5.9E-15 89.3 9.4 70 1-70 8-78 (79)
95 2io0_B Small ubiquitin-related 99.1 1.5E-10 5.2E-15 92.1 8.7 72 1-72 6-77 (91)
96 1wjn_A Tubulin-folding protein 99.1 1.6E-10 5.5E-15 92.8 7.9 72 2-73 11-93 (97)
97 2d07_B Ubiquitin-like protein 99.1 3.8E-10 1.3E-14 90.1 8.8 72 1-72 18-89 (93)
98 1wz0_A Ubiquitin-like protein 99.1 4.3E-10 1.5E-14 91.7 8.6 72 1-72 25-96 (104)
99 2k8h_A Small ubiquitin protein 99.0 5.7E-10 1.9E-14 91.8 7.1 72 1-72 27-98 (110)
100 3ec0_A Protease; HIV-2, inhibi 99.0 6.8E-09 2.3E-13 83.4 12.2 92 195-297 7-99 (99)
101 2eke_C Ubiquitin-like protein 99.0 1.3E-09 4.5E-14 89.0 8.1 71 1-72 32-102 (106)
102 2hs1_A HIV-1 protease; ultra-h 98.9 1.2E-08 4.1E-13 82.0 12.4 92 195-297 7-99 (99)
103 3ka2_A [L-Ala51;Gly51']HIV-1 p 98.8 6E-08 2E-12 87.5 12.6 93 195-298 7-100 (203)
104 2hah_A Protease, retropepsin; 98.6 5.7E-08 1.9E-12 80.3 7.5 94 195-296 13-115 (116)
105 3kyd_D Small ubiquitin-related 98.6 1E-07 3.4E-12 78.7 8.9 71 2-72 42-112 (115)
106 2pjh_A Protein NPL4, nuclear p 98.5 6.7E-08 2.3E-12 74.9 5.0 69 1-70 5-78 (80)
107 3pge_A SUMO-modified prolifera 98.4 8.5E-07 2.9E-11 80.1 8.5 70 2-72 31-100 (200)
108 3ka2_A [L-Ala51;Gly51']HIV-1 p 98.3 5.9E-06 2E-10 74.5 12.8 92 195-297 111-203 (203)
109 3tix_A Ubiquitin-like protein 98.3 1E-06 3.5E-11 78.4 7.4 70 2-72 59-128 (207)
110 3sqf_A Protease; folded monome 98.1 3.1E-06 1.1E-10 69.4 5.7 95 196-300 9-110 (114)
111 2rsp_A RSV protease; hydrolase 98.1 3.7E-06 1.3E-10 70.1 6.0 92 195-296 9-122 (124)
112 3goe_A DNA repair protein RAD6 98.1 1.7E-05 5.7E-10 60.3 8.7 67 4-70 13-80 (82)
113 3v7o_A Minor nucleoprotein VP3 98.0 6.5E-07 2.2E-11 80.7 0.0 71 1-72 22-92 (227)
114 2jxx_A Nfatc2-interacting prot 98.0 2.2E-05 7.6E-10 62.8 8.8 69 2-70 27-96 (97)
115 4efo_A Serine/threonine-protei 97.8 4.1E-05 1.4E-09 60.7 7.3 63 9-71 22-87 (94)
116 2kc2_A Talin-1, F1; FERM, adhe 97.7 5.6E-05 1.9E-09 63.3 7.0 71 2-72 13-122 (128)
117 2al3_A TUG long isoform; TUG U 97.7 0.00015 5.1E-09 56.8 8.6 73 1-73 10-82 (90)
118 2bps_A YUKD protein; ubiquitin 97.6 0.00013 4.6E-09 56.2 7.0 68 2-69 6-80 (81)
119 3uf8_A Ubiquitin-like protein 97.5 0.00024 8.1E-09 64.6 8.2 70 2-72 23-92 (209)
120 2l76_A Nfatc2-interacting prot 97.4 0.00072 2.5E-08 53.4 9.1 70 2-72 23-92 (95)
121 3ix6_A TS, tsase, thymidylate 97.3 3.2E-05 1.1E-09 75.5 0.0 69 2-71 23-91 (360)
122 2pma_A Uncharacterized protein 97.1 0.00085 2.9E-08 57.4 6.7 108 191-301 5-141 (146)
123 3qx1_A FAS-associated factor 1 97.1 0.0024 8.3E-08 49.2 8.7 69 2-71 9-82 (84)
124 3liy_A Protease; hydrolase, hy 97.0 0.00097 3.3E-08 54.4 6.0 93 196-297 10-115 (116)
125 4da1_A Protein phosphatase 1K, 97.0 0.00012 4.1E-09 72.5 0.0 69 3-72 33-101 (389)
126 2dzk_A UBX domain-containing p 96.8 0.011 3.8E-07 47.9 10.6 72 2-73 15-91 (109)
127 1wj4_A KIAA0794 protein; UBX d 96.3 0.012 4.1E-07 48.9 7.9 70 2-72 45-119 (124)
128 2l32_A Small archaeal modifier 96.1 0.021 7.3E-07 42.9 7.6 62 1-72 1-62 (74)
129 2cr5_A Reproduction 8; UBX dom 95.5 0.078 2.7E-06 42.8 9.3 70 2-72 25-98 (109)
130 2jys_A Protease/reverse transc 95.3 0.04 1.4E-06 43.1 6.5 68 199-273 10-77 (107)
131 1s3s_G P47 protein; AAA ATPase 95.3 0.049 1.7E-06 45.3 7.5 67 2-68 54-124 (127)
132 3qvc_A Histo-aspartic protease 95.1 0.067 2.3E-06 53.8 9.3 91 195-287 137-251 (451)
133 2daj_A KIAA0977 protein, COBL- 94.9 0.061 2.1E-06 41.3 6.3 68 2-72 12-82 (91)
134 2qsf_X RAD23, UV excision repa 94.6 0.018 6E-07 50.4 3.0 41 94-135 36-80 (171)
135 2x0b_A Renin; hydrolase-hormon 94.5 0.075 2.6E-06 52.2 7.6 92 194-287 60-175 (383)
136 1pve_A HHR23B, UV excision rep 94.4 0.038 1.3E-06 41.3 4.0 40 94-134 16-59 (72)
137 1ryj_A Unknown; beta/alpha pro 93.8 0.3 1E-05 35.9 8.0 61 1-71 5-65 (70)
138 1yg9_A Aspartic protease BLA G 93.3 0.19 6.3E-06 48.0 7.8 91 195-287 17-128 (330)
139 4e71_A Plexin-B2, MM1; transme 93.3 0.39 1.3E-05 38.9 8.3 62 10-71 23-109 (111)
140 1miq_A Plasmepsin; aspartic pr 93.2 0.1 3.5E-06 51.0 5.8 91 195-287 62-176 (375)
141 2bju_A Plasmepsin II; aspartic 93.1 0.15 5.1E-06 51.3 7.0 91 195-287 138-252 (453)
142 3k1w_A Renin; protease, altern 92.9 0.58 2E-05 44.4 10.7 91 195-287 18-132 (341)
143 2f4m_B UV excision repair prot 92.9 0.12 4.1E-06 37.4 4.3 39 94-133 14-56 (61)
144 3cms_A Chymosin B; hydrolase, 92.9 0.26 9E-06 46.7 8.1 91 195-287 14-127 (323)
145 3ivf_A Talin-1; FERM domain, c 92.8 0.31 1.1E-05 47.4 8.7 69 3-72 6-84 (371)
146 1b5f_A Protein (cardosin A); h 92.8 0.3 1E-05 44.3 8.0 91 195-287 13-127 (239)
147 1oey_A P67-PHOX, neutrophil cy 92.5 0.24 8.3E-06 38.0 5.8 45 1-47 6-50 (83)
148 1tzs_A Cathepsin E; hydrolase, 92.5 0.36 1.2E-05 46.3 8.6 91 195-287 23-136 (351)
149 1bxo_A Protein (penicillopepsi 92.5 0.23 7.9E-06 47.2 7.1 93 194-287 14-126 (323)
150 3psg_A Pepsinogen; hydrolase(a 92.5 1.1 3.7E-05 43.4 12.0 91 195-287 56-169 (370)
151 1izd_A Aspartic proteinase; su 92.4 0.2 6.7E-06 47.7 6.5 93 194-287 14-126 (323)
152 4aa9_A Chymosin; hydrolase, as 92.3 0.6 2.1E-05 43.9 9.8 90 196-287 12-124 (320)
153 1ibq_A Aspergillopepsin; aspar 92.2 0.32 1.1E-05 46.2 7.7 92 195-287 14-125 (325)
154 1mpp_A Pepsin; hydrolase(acid 92.1 0.36 1.2E-05 46.4 8.0 91 195-287 18-137 (361)
155 2r2o_A Plexin-B1; effector dom 91.8 0.55 1.9E-05 39.4 7.6 63 11-73 41-129 (138)
156 1dpj_A Proteinase A; proteinas 91.8 0.43 1.5E-05 45.3 8.0 91 195-287 13-126 (329)
157 1wkr_A Polyporopepsin; hydrola 91.7 0.33 1.1E-05 46.3 7.2 86 196-287 13-109 (340)
158 3jyu_A Ubiquitin carboxyl-term 91.6 0.35 1.2E-05 44.1 6.9 61 12-72 153-220 (231)
159 3c9x_A Trichoderma reesei aspa 91.5 0.49 1.7E-05 45.0 8.1 92 195-287 15-130 (329)
160 4a3p_A Ubiquitin carboxyl-term 91.4 0.34 1.2E-05 43.8 6.6 61 12-72 141-208 (217)
161 1htr_B Gastricsin; aspartyl pr 90.8 1.3 4.4E-05 41.9 10.3 91 195-287 12-125 (329)
162 3fv3_A SAPP1P-secreted asparti 90.5 0.35 1.2E-05 46.0 6.1 92 195-287 12-122 (339)
163 1oew_A Endothiapepsin; hydrola 90.5 0.53 1.8E-05 44.7 7.3 91 195-287 15-129 (329)
164 3qvc_A Histo-aspartic protease 90.4 1.1 3.8E-05 44.8 9.9 103 201-306 322-447 (451)
165 3pvk_A Candidapepsin-2; hydrol 90.4 0.39 1.3E-05 45.6 6.3 92 195-287 12-128 (342)
166 1qdm_A Prophytepsin; aspartic 90.2 0.68 2.3E-05 46.7 8.1 91 195-287 52-166 (478)
167 3cms_A Chymosin B; hydrolase, 90.1 1.4 4.8E-05 41.6 9.9 100 200-305 197-320 (323)
168 1lya_B Cathepsin D; lysosomal 89.7 1.8 6.2E-05 38.8 9.9 99 201-305 108-238 (241)
169 1ibq_A Aspergillopepsin; aspar 89.7 0.87 3E-05 43.1 8.1 97 207-305 208-322 (325)
170 1izd_A Aspartic proteinase; su 89.6 0.74 2.5E-05 43.6 7.5 98 206-305 207-320 (323)
171 2apr_A Rhizopuspepsin; hydrola 89.2 0.88 3E-05 43.1 7.7 91 195-287 15-127 (325)
172 1lya_A Cathepsin D; lysosomal 89.2 0.83 2.8E-05 35.7 6.2 32 195-226 13-47 (97)
173 2apr_A Rhizopuspepsin; hydrola 89.0 0.7 2.4E-05 43.8 6.8 93 207-306 212-322 (325)
174 1am5_A Pepsin, acid proteinase 89.0 0.63 2.2E-05 44.0 6.5 91 195-287 12-125 (324)
175 1am5_A Pepsin, acid proteinase 88.9 0.58 2E-05 44.2 6.1 98 201-305 197-321 (324)
176 2qzx_A Candidapepsin-5; aspart 88.8 1.8 6.3E-05 41.0 9.7 92 195-287 12-128 (342)
177 4aa9_A Chymosin; hydrolase, as 88.7 1.8 6.2E-05 40.5 9.5 99 201-305 195-317 (320)
178 1j71_A Candidapepsin, aspartic 88.6 0.6 2.1E-05 44.4 6.1 92 195-287 12-128 (334)
179 1vjk_A Molybdopterin convertin 88.5 2.7 9.3E-05 32.6 8.8 66 1-71 10-93 (98)
180 4e74_A Plexin-A4; RBD, structu 88.4 1.5 5.3E-05 35.7 7.4 63 11-73 27-115 (117)
181 1dpj_A Proteinase A; proteinas 88.0 3.1 0.00011 39.2 10.7 99 201-305 201-326 (329)
182 1yg9_A Aspartic protease BLA G 88.0 0.59 2E-05 44.5 5.5 101 201-306 202-327 (330)
183 1bxo_A Protein (penicillopepsi 87.9 0.98 3.3E-05 42.7 7.0 102 202-305 199-320 (323)
184 1miq_A Plasmepsin; aspartic pr 87.8 1.3 4.6E-05 42.9 8.1 99 201-306 247-372 (375)
185 3h6n_A Plexin-D1; structural g 87.8 2.5 8.4E-05 34.9 8.3 63 10-72 16-104 (127)
186 2juo_A GA-binding protein alph 87.8 0.94 3.2E-05 34.6 5.3 58 13-70 5-62 (89)
187 1oew_A Endothiapepsin; hydrola 87.6 1.3 4.4E-05 42.0 7.7 101 201-305 201-327 (329)
188 3c9x_A Trichoderma reesei aspa 87.4 1.2 4.2E-05 42.2 7.4 101 201-305 202-327 (329)
189 3k1w_A Renin; protease, altern 87.3 1.1 3.6E-05 42.6 6.9 99 201-306 208-338 (341)
190 3rpf_C Molybdopterin convertin 87.2 1.8 6E-05 31.9 6.7 66 1-71 1-69 (74)
191 3lpj_A Beta-secretase 1; alzhe 87.2 1.3 4.3E-05 44.1 7.7 87 196-287 75-185 (455)
192 3fv3_A SAPP1P-secreted asparti 87.0 1.1 3.6E-05 42.6 6.7 102 201-306 204-327 (339)
193 2llw_A Heat shock protein STI1 86.8 2.6 9E-05 31.2 7.3 29 91-121 7-35 (71)
194 1wkr_A Polyporopepsin; hydrola 86.3 0.79 2.7E-05 43.6 5.4 105 199-306 193-331 (340)
195 3aup_A SBG7S, BG, basic 7S glo 86.2 1.9 6.5E-05 42.0 8.3 27 280-306 358-385 (403)
196 1htr_B Gastricsin; aspartyl pr 85.9 1.9 6.5E-05 40.7 7.9 99 201-305 198-326 (329)
197 3vf3_A Beta-secretase 1; struc 85.9 1.3 4.4E-05 43.1 6.8 88 195-287 28-139 (402)
198 3aup_A SBG7S, BG, basic 7S glo 85.9 1.2 4.1E-05 43.6 6.6 93 195-287 21-163 (403)
199 2bju_A Plasmepsin II; aspartic 85.9 2.7 9.1E-05 42.1 9.2 102 201-306 323-448 (453)
200 2x0b_A Renin; hydrolase-hormon 85.2 4.2 0.00014 39.5 10.1 98 201-305 251-380 (383)
201 1tzs_A Cathepsin E; hydrolase, 85.1 1.8 6.1E-05 41.4 7.3 99 201-306 210-340 (351)
202 2f4m_B UV excision repair prot 85.1 1.3 4.3E-05 31.9 4.6 53 98-158 5-59 (61)
203 2kvr_A Ubiquitin carboxyl-term 85.0 0.86 3E-05 37.8 4.3 34 13-46 58-91 (130)
204 2qzx_A Candidapepsin-5; aspart 84.9 5.5 0.00019 37.6 10.6 98 201-306 202-329 (342)
205 2qp8_A Beta-secretase 1; BACE1 84.7 1.7 5.7E-05 42.3 6.9 90 196-287 22-132 (395)
206 1tyg_B YJBS; alpha beta barrel 84.4 1.4 4.9E-05 33.9 5.0 52 15-71 30-82 (87)
207 1mpp_A Pepsin; hydrolase(acid 84.3 1.3 4.4E-05 42.5 5.9 29 278-306 325-353 (361)
208 1pve_A HHR23B, UV excision rep 84.3 0.55 1.9E-05 35.0 2.5 55 98-160 7-63 (72)
209 2ewy_A Beta-secretase 2; BACE2 84.2 2.6 9E-05 40.5 8.1 90 196-287 14-124 (383)
210 1j71_A Candidapepsin, aspartic 83.9 3 0.0001 39.4 8.2 99 201-306 202-322 (334)
211 1f0z_A THis protein; ubiquitin 83.1 1.4 4.9E-05 31.6 4.3 61 1-71 1-61 (66)
212 3pvk_A Candidapepsin-2; hydrol 82.7 0.76 2.6E-05 43.6 3.5 101 201-306 201-329 (342)
213 3psg_A Pepsinogen; hydrolase(a 82.7 4.6 0.00016 38.9 9.2 99 201-305 241-367 (370)
214 3kuz_A Plexin-C1; structural g 82.1 9 0.00031 31.5 9.1 62 11-72 39-126 (126)
215 1vd2_A Protein kinase C, IOTA 79.9 5.9 0.0002 30.6 7.0 45 2-47 8-53 (89)
216 2qsf_X RAD23, UV excision repa 79.8 0.68 2.3E-05 40.3 1.7 57 97-161 25-84 (171)
217 2kl0_A Putative thiamin biosyn 79.7 2 6.9E-05 31.8 4.1 61 1-72 1-61 (73)
218 2k5p_A THis protein, thiamine- 79.4 1.9 6.4E-05 32.4 3.9 61 1-71 1-64 (78)
219 3po0_A Small archaeal modifier 79.1 14 0.00046 27.8 8.9 56 11-71 18-84 (89)
220 1y8x_B Ubiquitin-activating en 79.0 2.9 9.8E-05 33.0 5.0 62 12-73 6-85 (98)
221 1oqy_A HHR23A, UV excision rep 78.8 0.8 2.7E-05 44.8 2.1 37 96-133 249-289 (368)
222 1t6e_X Xylanase inhibitor; two 78.1 3.3 0.00011 40.0 6.4 27 280-306 345-371 (381)
223 3dwg_C 9.5 kDa culture filtrat 77.3 6 0.00021 30.1 6.4 69 1-71 1-88 (93)
224 3hm6_X Plexin-B1; structural g 76.8 6.6 0.00022 40.7 8.2 62 11-72 274-361 (644)
225 2dbs_A Hypothetical protein TT 76.1 4.4 0.00015 30.2 4.9 43 154-212 35-78 (90)
226 3onh_A Ubiquitin-activating en 75.7 5.4 0.00019 32.8 5.9 51 20-71 19-78 (127)
227 3qa8_A MGC80376 protein; kinas 75.3 4.2 0.00014 42.9 6.6 64 9-72 320-393 (676)
228 2kmc_A Fermitin family homolog 74.0 22 0.00077 27.9 8.7 71 2-72 21-99 (102)
229 2lnm_A Protein TIC 40, chlorop 73.8 5.2 0.00018 28.5 4.8 26 94-121 2-27 (62)
230 1wgk_A Riken cDNA 2900073H19 p 73.4 5.4 0.00019 32.1 5.4 69 1-71 12-103 (114)
231 1ip9_A BEM1 protein; ubiquitin 72.9 6.5 0.00022 30.1 5.3 36 1-37 13-48 (85)
232 3vla_A EDGP; extracellular, in 72.7 8.7 0.0003 37.7 7.8 27 280-306 371-397 (413)
233 3vf3_A Beta-secretase 1; struc 71.6 3 0.0001 40.5 4.1 28 279-306 345-372 (402)
234 3ivf_A Talin-1; FERM domain, c 70.9 16 0.00053 35.1 9.1 71 2-72 87-167 (371)
235 2kmm_A Guanosine-3',5'-BIS(dip 69.2 9.7 0.00033 27.3 5.6 63 1-72 1-63 (73)
236 2qjl_A URM1, ubiquitin-related 68.9 28 0.00094 26.8 8.5 71 1-71 2-94 (99)
237 3ig3_A Plxna3 protein; plexin 68.0 16 0.00055 37.8 8.6 63 11-73 247-335 (627)
238 2k9x_A Tburm1, uncharacterized 67.6 2.7 9.3E-05 33.8 2.3 69 1-71 5-97 (110)
239 2ewy_A Beta-secretase 2; BACE2 66.8 3.5 0.00012 39.6 3.5 28 279-306 326-353 (383)
240 3lpj_A Beta-secretase 1; alzhe 66.6 5 0.00017 39.7 4.6 28 279-306 391-418 (455)
241 2l52_A Methanosarcina acetivor 65.8 27 0.00092 26.9 7.9 67 1-71 4-94 (99)
242 1fm0_D Molybdopterin convertin 64.0 12 0.0004 27.4 5.2 54 12-71 18-76 (81)
243 2cu3_A Unknown function protei 63.9 14 0.00047 26.1 5.4 55 9-71 5-59 (64)
244 1qdm_A Prophytepsin; aspartic 63.7 15 0.0005 36.8 7.5 27 279-305 449-475 (478)
245 2q5w_D Molybdopterin convertin 63.7 7.7 0.00026 28.2 4.1 55 11-71 16-72 (77)
246 4eut_A Serine/threonine-protei 61.8 19 0.00065 34.3 7.7 52 10-61 321-374 (396)
247 1q1o_A Cell division control p 61.5 12 0.00042 29.4 5.0 36 2-37 7-49 (98)
248 3qij_A Protein 4.1; cytoskelet 61.1 27 0.00093 32.4 8.4 72 1-72 18-95 (296)
249 1h4r_A Merlin; FERM, neurofibr 59.5 32 0.0011 32.0 8.6 64 2-66 24-92 (314)
250 1ef1_A Moesin; membrane, FERM 59.4 29 0.001 31.8 8.2 65 1-66 2-72 (294)
251 2ylm_A Ubiquitin carboxyl-term 57.7 7.2 0.00025 39.8 3.9 33 13-45 38-70 (530)
252 3vla_A EDGP; extracellular, in 55.1 51 0.0017 32.0 9.5 26 196-221 21-48 (413)
253 1rws_A Hypothetical protein PF 54.6 4.7 0.00016 29.8 1.5 48 14-70 24-71 (77)
254 2g1e_A Hypothetical protein TA 53.6 34 0.0012 25.3 6.3 57 14-71 18-85 (90)
255 3u52_E Phenol hydroxylase comp 53.5 38 0.0013 27.4 6.7 60 11-70 38-107 (119)
256 2lnm_A Protein TIC 40, chlorop 53.1 33 0.0011 24.2 5.8 23 104-129 2-24 (62)
257 2l9b_A MRNA 3'-END-processing 51.5 13 0.00044 29.8 3.6 26 96-121 61-86 (109)
258 2hj1_A Hypothetical protein; s 50.9 20 0.00068 28.0 4.6 57 10-71 25-84 (97)
259 2llv_A Heat shock protein STI1 49.4 4.4 0.00015 29.8 0.5 23 102-127 11-33 (71)
260 1wgy_A RAP guanine nucleotide 47.2 85 0.0029 24.7 7.8 68 5-72 14-86 (104)
261 2i1j_A Moesin; FERM, coiled-co 46.9 42 0.0015 34.4 7.7 65 2-67 6-76 (575)
262 1wgr_A Growth factor receptor- 46.2 35 0.0012 26.8 5.3 70 3-72 12-92 (100)
263 2eel_A Cell death activator CI 45.3 39 0.0013 26.1 5.4 46 22-70 29-76 (91)
264 1b5f_A Protein (cardosin A); h 44.8 14 0.00048 33.0 3.3 29 201-229 197-232 (239)
265 2inc_C TOUB protein; DIIRON, 4 40.2 1.2E+02 0.004 22.9 7.5 58 13-70 15-80 (83)
266 3hvz_A Uncharacterized protein 38.6 58 0.002 24.1 5.3 62 2-72 7-68 (78)
267 1t6e_X Xylanase inhibitor; two 37.3 66 0.0022 30.6 7.0 25 195-222 14-38 (381)
268 1dvp_A HRS, hepatocyte growth 36.9 52 0.0018 29.1 5.8 52 149-207 88-139 (220)
269 1f2r_I Inhibitor of caspase-ac 36.0 72 0.0025 25.0 5.6 49 21-71 37-89 (100)
270 2q2f_A Selenoprotein S; anti-p 35.4 1.4E+02 0.0049 22.6 8.3 20 162-182 69-88 (89)
271 2ylm_A Ubiquitin carboxyl-term 35.1 25 0.00087 35.7 3.7 58 15-72 151-217 (530)
272 2ns5_A Partitioning-defective 34.6 1.5E+02 0.0051 22.4 8.4 67 1-69 3-79 (85)
273 3ge3_C Toluene-4-monooxygenase 34.5 1.5E+02 0.0051 22.4 7.0 58 13-70 17-81 (84)
274 3lay_A Zinc resistance-associa 34.3 2.2E+02 0.0075 24.4 9.1 47 145-191 95-149 (175)
275 2lgx_A Fermitin family homolog 34.2 21 0.00071 28.5 2.2 61 11-71 36-101 (112)
276 1x5b_A Signal transducing adap 33.0 85 0.0029 26.5 6.2 52 149-207 98-149 (163)
277 3h9d_A ATG8, microtubule-assoc 31.9 50 0.0017 26.7 4.3 57 15-71 52-112 (119)
278 3m95_A Autophagy related prote 29.2 57 0.0019 26.6 4.2 56 15-71 57-117 (125)
279 3g2s_A C-terminal fragment of 27.7 1.1E+02 0.0037 25.5 5.9 37 147-189 92-133 (149)
280 3r8s_T 50S ribosomal protein L 27.6 1.2E+02 0.004 23.4 5.5 40 10-49 27-67 (93)
281 1b5f_B Protein (cardosin A); h 27.1 40 0.0014 24.9 2.8 27 279-305 58-84 (87)
282 3au4_A Myosin-X; protein-prote 26.7 72 0.0025 32.2 5.5 44 2-45 218-263 (555)
283 3tuf_A Stage III sporulation p 25.0 2.9E+02 0.01 24.2 8.3 60 145-214 97-164 (197)
284 1pqs_A Cell division control p 24.9 62 0.0021 24.0 3.4 26 12-37 3-28 (77)
285 1j0g_A Hypothetical protein 18 23.9 1.7E+02 0.006 21.9 5.6 60 13-72 26-86 (92)
286 3ldz_A STAM-1, signal transduc 23.6 35 0.0012 28.1 2.0 36 159-201 97-132 (140)
287 1v8c_A MOAD related protein; r 23.3 1.7E+02 0.0059 24.7 6.4 56 14-71 17-82 (168)
288 2r2q_A Gamma-aminobutyric acid 22.9 1.2E+02 0.0041 23.9 5.0 45 15-59 48-93 (110)
289 2dhz_A RAP guanine nucleotide 22.8 2.2E+02 0.0074 23.0 6.5 64 7-72 16-92 (120)
290 3rui_B Autophagy-related prote 22.7 85 0.0029 25.2 4.1 44 15-58 51-95 (118)
291 2llw_A Heat shock protein STI1 22.1 1.3E+02 0.0043 21.9 4.6 53 104-172 10-63 (71)
292 2nvu_B Maltose binding protein 21.7 1.2E+02 0.004 32.1 6.1 60 13-72 714-791 (805)
293 3pvl_A Myosin VIIA isoform 1; 21.6 98 0.0034 32.2 5.4 45 1-45 264-309 (655)
294 2v1y_A Phosphatidylinositol-4, 21.5 1.1E+02 0.0039 24.2 4.5 65 5-70 24-102 (108)
295 1mhq_A ADP-ribosylation factor 21.0 1.7E+02 0.0058 24.2 5.8 37 147-189 82-123 (148)
296 3tve_T 50S ribosomal protein L 20.8 1.6E+02 0.0054 22.5 5.1 40 10-49 21-61 (92)
297 1vq8_S 50S ribosomal protein L 20.8 1.2E+02 0.0042 22.8 4.4 33 10-42 22-54 (85)
298 1eo6_A GATE-16, golgi-associat 20.4 1.4E+02 0.0047 23.8 4.9 58 15-72 49-110 (117)
299 3zqe_A Protein PRGI, cell inva 20.3 3E+02 0.01 25.7 7.8 38 146-183 29-66 (305)
300 2zjr_Q 50S ribosomal protein L 20.1 1.5E+02 0.0052 22.8 4.9 36 13-48 25-61 (95)
No 1
>3s8i_A Protein DDI1 homolog 1; protease, structural genomics, structural genomics consortiu retropepsin-like domain, protein turnover, hydrolase; 1.70A {Homo sapiens}
Probab=100.00 E-value=5.3e-37 Score=267.53 Aligned_cols=136 Identities=53% Similarity=0.942 Sum_probs=119.9
Q ss_pred hcCCccccccceeEEeeeecCeeEEEEEcCCccccccCHHHHHHcCCccccCCcceeEeecCcceeEEeEEEEEeEEEcC
Q 016931 185 EHNPEAFARVVMLYVDMEVNGIPLKAFVDSGAQSTIISKSCAERCGLLRLLDDRYRGVAHGVGQSEILGRIHVAPIKIGN 264 (380)
Q Consensus 185 E~~Pe~f~~~~~lyv~v~Ing~~v~alVDTGA~~siIs~~~a~rlgL~~~~~~~~~~~~~gvg~~~~~g~i~~~~i~ig~ 264 (380)
-..||+|+++.|+||+|+|||++++|||||||++|+||.+||+||||.++.+.++.+.+.|+|+.++.|+++.++|+||+
T Consensus 13 ~~~~~~~~~~~~l~v~~~Ing~~v~~LVDTGAs~s~Is~~~A~rlGL~~~~~~~~~~~a~g~G~~~~~g~v~~~~I~Ig~ 92 (148)
T 3s8i_A 13 GLVPRGSGQVTMLYINCKVNGHPLKAFVDSGAQMTIMSQACAERCNIMRLVDRRWAGVAKGVGTQRIIGRVHLAQIQIEG 92 (148)
T ss_dssp ---------CCCCEEEEEETTEEEEEEECTTCSSCEEEHHHHHHTTCGGGEEGGGCEECCC---CEEEEEEEEEEEEETT
T ss_pred CcCceeccccCEEEEEEEECCEEEEEEEeCCCCcEeeCHHHHHHcCCccccCcceeEEEEcCCccEEEEEEEEEEEEECC
Confidence 34799999999999999999999999999999999999999999999888888888899999999999999999999999
Q ss_pred EEEeEEEEEecCCCCceeeeHHHHhhcCeEEEcCCCEEEEcCCceeeeccCCCCCC
Q 016931 265 VFYPCSFVVLDSPNMEFLFGLDMLRKHQCIIDLKENVLRVGGGEVSVPFLQEKDIP 320 (380)
Q Consensus 265 ~~~~~~~~Vl~~~~~d~iLG~D~L~~~~~~ID~~~~~l~i~~~~~~~pfl~~~e~~ 320 (380)
..++++|.|++...+|+|||||||++++|+|||++++|+|+++++++||++|+|||
T Consensus 93 ~~~~~~~~Vle~~~~d~LLGmD~L~~~~~~ID~~~~~L~l~~~~~~~pfl~~~~~~ 148 (148)
T 3s8i_A 93 DFLQCSFSILEDQPMDMLLGLDMLRRHQCSIDLKKNVLVIGTTGTQTYFLPEGELP 148 (148)
T ss_dssp EEEEEEEEEETTCSSSEEECHHHHHHTTCEEETTTTEEECTTTCCEEECCCGGGCC
T ss_pred EEEEEEEEEeCCCCcCeeccHHHHHhCCEEEEcCCCEEEEccCCeEEeecCcccCc
Confidence 99999999999989999999999999999999999999999877899999999997
No 2
>2i1a_A DNA damage-inducible protein DDI1; acid protease fold, dimer, retroviral protease domain, protein turnover; HET: DNA; 2.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.7e-36 Score=260.53 Aligned_cols=148 Identities=50% Similarity=0.898 Sum_probs=108.3
Q ss_pred HHhhcHHHHHHHHHhcCCccccccceeEEeeeecCeeEEEEEcCCccccccCHHHHHHcCCccccCCcceeEeecCccee
Q 016931 171 IRQKGIDENWAAALEHNPEAFARVVMLYVDMEVNGIPLKAFVDSGAQSTIISKSCAERCGLLRLLDDRYRGVAHGVGQSE 250 (380)
Q Consensus 171 Irq~~i~en~~~A~E~~Pe~f~~~~~lyv~v~Ing~~v~alVDTGA~~siIs~~~a~rlgL~~~~~~~~~~~~~gvg~~~ 250 (380)
|||++|+|||+.|+|++||.|.+..++||+|+|||++++|||||||++|+||.++|++|||....+.++.+.+.|+|...
T Consensus 1 ~~~~~i~~~~~~a~e~~p~~~~~~~~~~v~v~InG~~~~~LvDTGAs~s~is~~~a~~lgl~~~~~~~~~~~a~g~g~~~ 80 (148)
T 2i1a_A 1 MKQQAIDEQLRNAIEYTPEMFTQVPMLYINIEINNYPVKAFVDTGAQTTIMSTRLAKKTGLSRMIDKRFIGEARGVGTGK 80 (148)
T ss_dssp ----------------------CCCCCEEEEEETTEEEEEEECTTCSSCEEEHHHHHHHTGGGGCBCCCC----------
T ss_pred CcHHHHHHHHHhhhhhCchhhcccceEEEEEEECCEEEEEEEECCCCccccCHHHHHHcCCCccCCcceEEEEecCCCcc
Confidence 79999999999999999999999999999999999999999999999999999999999998777767766778888777
Q ss_pred EEeEEEEEeEEEcCEEEeEEEEEecCCCCceeeeHHHHhhcCeEEEcCCCEEEEcCCceeeeccCCCCCCc
Q 016931 251 ILGRIHVAPIKIGNVFYPCSFVVLDSPNMEFLFGLDMLRKHQCIIDLKENVLRVGGGEVSVPFLQEKDIPS 321 (380)
Q Consensus 251 ~~g~i~~~~i~ig~~~~~~~~~Vl~~~~~d~iLG~D~L~~~~~~ID~~~~~l~i~~~~~~~pfl~~~e~~~ 321 (380)
..++++...++||+..++++|.|++ .++|+|||+|||+++++.|||++++|+|.+ .++||++++|+|+
T Consensus 81 ~~~~~~~~~i~ig~~~~~~~~~vl~-~~~d~iLG~d~L~~~~~~ID~~~~~l~l~~--~~~~f~~~~~~~~ 148 (148)
T 2i1a_A 81 IIGRIHQAQVKIETQYIPCSFTVLD-TDIDVLIGLDMLKRHLACVDLKENVLRIAE--VETSFLSEAEIPK 148 (148)
T ss_dssp -CEEEEEEEEEETTEEEEEEEEEEC-SSCSEEECHHHHHHTTCEEETTTTEEEETT--EEEECCCTTTCC-
T ss_pred cccEEEEEEEEECCEEeceeEEEec-CCCCeEecHHHHhhCCEEEECCCCEEEEcc--EEEecCChhhCCC
Confidence 7899999999999999999999999 578999999999999999999999999986 6899999999985
No 3
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=99.72 E-value=1.1e-17 Score=133.21 Aligned_cols=70 Identities=13% Similarity=0.178 Sum_probs=68.3
Q ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCCCcCeEEecCCeecCCcccchhcCCCCCcEEEEe
Q 016931 1 MRITVMTADEQIISLDVDPHETVENVKALLEVETQVPLQQQQLLYNGREMNNAEKLSALGVKDEDLVMMV 70 (380)
Q Consensus 1 M~ItVk~~~g~~~~i~V~~~~TV~~LK~~I~~~~gip~~~q~Li~~Gk~L~D~~tL~~~gI~dg~~I~l~ 70 (380)
|+|+||++.|+++.+++++++||.+||++|+.+.|+|+++|+|+|+|++|+|+.||++|+|++|++|+|.
T Consensus 22 IqI~Vk~~~Gkk~~v~v~p~DTI~~LK~~I~~k~Gip~~qQrLif~Gk~LkD~~TL~dY~I~dgstLhL~ 91 (93)
T 3plu_A 22 IEVVVNDRLGKKVRVKCLGEDSVGDFKKVLSLQIGTQPNKIVLQKGGSVLKDHISLEDYEVHDQTNLELY 91 (93)
T ss_dssp EEEEEECTTSCEEEEEEETTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEE
T ss_pred EEEEEECCCCCEEEEEECCcCHHHHHHHHHHHHhCCCHHHEEEEeCCEEccCcCCHHHcCCCCCCEEEEE
Confidence 6899999999999999999999999999999999999999999999999999999999999999999984
No 4
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=99.71 E-value=3.1e-17 Score=126.91 Aligned_cols=72 Identities=19% Similarity=0.216 Sum_probs=69.7
Q ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCCCcCeEEecCCeecCCcccchhcCCCCCcEEEEeec
Q 016931 1 MRITVMTADEQIISLDVDPHETVENVKALLEVETQVPLQQQQLLYNGREMNNAEKLSALGVKDEDLVMMVSN 72 (380)
Q Consensus 1 M~ItVk~~~g~~~~i~V~~~~TV~~LK~~I~~~~gip~~~q~Li~~Gk~L~D~~tL~~~gI~dg~~I~l~~~ 72 (380)
|+|+|++.+|+.+.++|++++||.+||++|+.++|+|+++|+|+|+|+.|+|+.+|++|||++|++||++.+
T Consensus 5 m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~l~l~~r 76 (79)
T 3phx_B 5 LSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLR 76 (79)
T ss_dssp EEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEEC
T ss_pred EEEEEEeCCCCEEEEEECCcChHHHHHHHHHhhcCCCHHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEe
Confidence 789999999999999999999999999999999999999999999999999999999999999999999854
No 5
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=99.71 E-value=2.5e-17 Score=129.61 Aligned_cols=72 Identities=18% Similarity=0.280 Sum_probs=69.9
Q ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCCCcCeEEecCCee-cCCcccchhcCCCCCcEEEEeec
Q 016931 1 MRITVMTADEQIISLDVDPHETVENVKALLEVETQVPLQQQQLLYNGRE-MNNAEKLSALGVKDEDLVMMVSN 72 (380)
Q Consensus 1 M~ItVk~~~g~~~~i~V~~~~TV~~LK~~I~~~~gip~~~q~Li~~Gk~-L~D~~tL~~~gI~dg~~I~l~~~ 72 (380)
|+|+|++.+|+.+.++|++++||++||++|+.++|+|+++|+|+|+|+. |+|+++|++|||++|++|+|+.+
T Consensus 11 ~~i~vk~l~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~lL~D~~tL~~y~I~~gs~i~lv~~ 83 (84)
T 2kk8_A 11 MKFLVENLNGSSFELEVDYRDTLLVVKQKIERSQHIPVSKQTLIVDGIVILREDLTVEQCQIVPTSDIQLEVS 83 (84)
T ss_dssp EEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCCSSSBHHHHTCCTTSCEEEEEC
T ss_pred eEEEEEecCCcEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCEEecCCcCCHHHcCCCCCCEEEEEEc
Confidence 8999999999999999999999999999999999999999999999999 99999999999999999999864
No 6
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.70 E-value=1.2e-16 Score=128.35 Aligned_cols=74 Identities=28% Similarity=0.577 Sum_probs=70.5
Q ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHH---hCCCCcCeEEecCCeecCCcccchhcCCCCCcEEEEeecCC
Q 016931 1 MRITVMTADEQIISLDVDPHETVENVKALLEVE---TQVPLQQQQLLYNGREMNNAEKLSALGVKDEDLVMMVSNAA 74 (380)
Q Consensus 1 M~ItVk~~~g~~~~i~V~~~~TV~~LK~~I~~~---~gip~~~q~Li~~Gk~L~D~~tL~~~gI~dg~~I~l~~~~~ 74 (380)
|+|+|++.+|+.+.++|++++||.+||++|+.+ +|+|+++|+|+|+|+.|+|+++|++|||++|++|+|+....
T Consensus 1 M~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~g~~i~l~~~~~ 77 (95)
T 1uel_A 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKP 77 (95)
T ss_dssp CEEEEEETTCCEEEEECCTTSBHHHHHHHHHHHHCTTTCCTTTEEEEETTEECCTTSBGGGGTCCSSSEEEEEESSC
T ss_pred CEEEEEeCCCCEEEEEECCCCHHHHHHHHHHhhcccCCCChhhEEEEECCEECCCcCcHHHCCCCCCCEEEEEEeCC
Confidence 899999999999999999999999999999999 79999999999999999999999999999999999986543
No 7
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.70 E-value=3e-17 Score=134.75 Aligned_cols=75 Identities=23% Similarity=0.430 Sum_probs=69.9
Q ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCCCcCeEEecCCeecCCcccchhcCCCCCcEEEEeecCCC
Q 016931 1 MRITVMTADEQIISLDVDPHETVENVKALLEVETQVPLQQQQLLYNGREMNNAEKLSALGVKDEDLVMMVSNAAS 75 (380)
Q Consensus 1 M~ItVk~~~g~~~~i~V~~~~TV~~LK~~I~~~~gip~~~q~Li~~Gk~L~D~~tL~~~gI~dg~~I~l~~~~~~ 75 (380)
|+|+|++.+|+.+.++|++++||.+||++|+.++|+|+++|+|+|+|+.|+|+.+|++|||++|++|+|+.+.+.
T Consensus 2 m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~~i~~g~~i~lv~~~~~ 76 (106)
T 3m62_B 2 VSLTFKNFKKEKVPLDLEPSNTILETKTKLAQSISCEESQIKLIYSGKVLQDSKTVSECGLKDGDQVVFMVSQKK 76 (106)
T ss_dssp -CEEEECTTCCEEEECCCTTSBHHHHHHHHHHTTTSCGGGCEEEETTEECCTTSBTTTTTCCTTCEEEEECCC--
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEECCEECCCcCCHHHcCCCCCCEEEEEEcCCC
Confidence 899999999999999999999999999999999999999999999999999999999999999999999965443
No 8
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=99.69 E-value=6e-17 Score=128.51 Aligned_cols=74 Identities=24% Similarity=0.442 Sum_probs=70.7
Q ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCCCcCeEEecCCeecCCcccchhcCCCCCcEEEEeecCCC
Q 016931 1 MRITVMTADEQIISLDVDPHETVENVKALLEVETQVPLQQQQLLYNGREMNNAEKLSALGVKDEDLVMMVSNAAS 75 (380)
Q Consensus 1 M~ItVk~~~g~~~~i~V~~~~TV~~LK~~I~~~~gip~~~q~Li~~Gk~L~D~~tL~~~gI~dg~~I~l~~~~~~ 75 (380)
|+|+|++.+|+.+.++|++++||.+||++|+.++|+|+++|+|+|+|+.|+|+.+|++||| +|++|||+.+.++
T Consensus 6 m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~Gk~L~d~~tL~~~~i-~g~~i~l~~~~~~ 79 (90)
T 4dwf_A 6 LEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYNV-GGKVIHLVERAPP 79 (90)
T ss_dssp EEEEEEETTCCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTC-TTEEEEEEECCCC
T ss_pred EEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCeECCCCCCHHHcCC-CCcEEEEEecCCC
Confidence 7999999999999999999999999999999999999999999999999999999999999 8999999977544
No 9
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.69 E-value=2.9e-17 Score=132.93 Aligned_cols=71 Identities=10% Similarity=0.111 Sum_probs=68.8
Q ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCCCcCeEEecCCeecCCcccchhcCCCCCcEEEEee
Q 016931 1 MRITVMTADEQIISLDVDPHETVENVKALLEVETQVPLQQQQLLYNGREMNNAEKLSALGVKDEDLVMMVS 71 (380)
Q Consensus 1 M~ItVk~~~g~~~~i~V~~~~TV~~LK~~I~~~~gip~~~q~Li~~Gk~L~D~~tL~~~gI~dg~~I~l~~ 71 (380)
|+|+|+++.|+.+.++|++++||.+||++|+.+.|+|+++|+|+|.|++|+|+.||++|||++|++|||+.
T Consensus 29 m~I~VKtl~Gk~i~lev~p~dTV~~lK~~Ia~k~Gip~~qQrLi~~Gk~L~D~~TL~dygI~~gstlhL~~ 99 (100)
T 1uh6_A 29 IEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKWYTIFKDHVSLGDYEIHDGMNLELYY 99 (100)
T ss_dssp EEEEEECSSSSCEEEEEETTSBHHHHHHHHHHHHCCCGGGCEEEETTEECCSSCBHHHHTCCTTEEEEEEC
T ss_pred EEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEECCEECCCCCCHHHcCCCCCCEEEEEe
Confidence 78999999999999999999999999999999999999999999999999999999999999999999863
No 10
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=99.69 E-value=7.9e-17 Score=127.69 Aligned_cols=72 Identities=29% Similarity=0.517 Sum_probs=70.1
Q ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCCCcCeEEecCCeecCCcccchhcCCCCCcEEEEeec
Q 016931 1 MRITVMTADEQIISLDVDPHETVENVKALLEVETQVPLQQQQLLYNGREMNNAEKLSALGVKDEDLVMMVSN 72 (380)
Q Consensus 1 M~ItVk~~~g~~~~i~V~~~~TV~~LK~~I~~~~gip~~~q~Li~~Gk~L~D~~tL~~~gI~dg~~I~l~~~ 72 (380)
|+|+|++.+|+.+.++|++++||.+||++|+.++|+|+++|+|+|+|+.|+|+.+|++|||++|++|+|+.+
T Consensus 1 M~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~l~l~~r 72 (88)
T 4fbj_B 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLA 72 (88)
T ss_dssp CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTTTTTCCTTCEEEEECB
T ss_pred CEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcChhHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEE
Confidence 899999999999999999999999999999999999999999999999999999999999999999999854
No 11
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=99.69 E-value=1e-16 Score=125.52 Aligned_cols=75 Identities=23% Similarity=0.485 Sum_probs=69.6
Q ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHH---hCCCCcCeEEecCCeecCCcccchhcCCCCCcEEEEeecCCC
Q 016931 1 MRITVMTADEQIISLDVDPHETVENVKALLEVE---TQVPLQQQQLLYNGREMNNAEKLSALGVKDEDLVMMVSNAAS 75 (380)
Q Consensus 1 M~ItVk~~~g~~~~i~V~~~~TV~~LK~~I~~~---~gip~~~q~Li~~Gk~L~D~~tL~~~gI~dg~~I~l~~~~~~ 75 (380)
|+|+|++.+|+.+.++|++++||.+||++|+.+ +|+|+++|+|+|+|+.|+|+++|++|||++|++|||+.++++
T Consensus 6 m~i~vk~~~g~~~~~~v~~~~TV~~lK~~i~~~~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~i~l~~~~~~ 83 (85)
T 2wyq_A 6 VTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVTKTK 83 (85)
T ss_dssp EEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHCTTTCCGGGEEEEETTEECCTTSBGGGGCCCTTSEEEEEEC---
T ss_pred EEEEEEECCCCEEEEEECCCCCHHHHHHHHHhhccccCCCHHHeEEEECCEECcCCCCHHHcCCCCCCEEEEEEcCCC
Confidence 789999999999999999999999999999998 899999999999999999999999999999999999976443
No 12
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=99.67 E-value=1.4e-16 Score=126.83 Aligned_cols=72 Identities=32% Similarity=0.565 Sum_probs=69.7
Q ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCCCcCeEEecCCeecCCcccchhcCCCCCcEEEEeec
Q 016931 1 MRITVMTADEQIISLDVDPHETVENVKALLEVETQVPLQQQQLLYNGREMNNAEKLSALGVKDEDLVMMVSN 72 (380)
Q Consensus 1 M~ItVk~~~g~~~~i~V~~~~TV~~LK~~I~~~~gip~~~q~Li~~Gk~L~D~~tL~~~gI~dg~~I~l~~~ 72 (380)
|+|+|++.+|+.+.++|++++||.+||++|+.++|+|+++|+|+|+|+.|+|+.+|++|||++|++|||+.+
T Consensus 18 m~i~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~r 89 (91)
T 3v6c_B 18 MQIFVNTLTGTHITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 89 (91)
T ss_dssp EEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTCBTGGGTCCTTCEEEEECC
T ss_pred EEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCChhhEEEEECCeECCCcCcHHHCCCCCCCEEEEEEe
Confidence 799999999999999999999999999999999999999999999999999999999999999999999854
No 13
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=99.67 E-value=2.3e-16 Score=120.37 Aligned_cols=72 Identities=29% Similarity=0.517 Sum_probs=69.8
Q ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCCCcCeEEecCCeecCCcccchhcCCCCCcEEEEeec
Q 016931 1 MRITVMTADEQIISLDVDPHETVENVKALLEVETQVPLQQQQLLYNGREMNNAEKLSALGVKDEDLVMMVSN 72 (380)
Q Consensus 1 M~ItVk~~~g~~~~i~V~~~~TV~~LK~~I~~~~gip~~~q~Li~~Gk~L~D~~tL~~~gI~dg~~I~l~~~ 72 (380)
|+|+|++.+|+.+.++|++++||.+||++|+.++|+|+++|+|+|+|+.|+|+.+|++|||++|++||++.+
T Consensus 1 M~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~g~~i~l~~~ 72 (76)
T 1ndd_A 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLA 72 (76)
T ss_dssp CEEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEEC
T ss_pred CEEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEe
Confidence 899999999999999999999999999999999999999999999999999999999999999999999854
No 14
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=99.67 E-value=1.8e-16 Score=122.24 Aligned_cols=72 Identities=24% Similarity=0.359 Sum_probs=69.0
Q ss_pred CEEEEEeCCCCEE-EEE-eCCCCCHHHHHHHHHHHhCCCCcCeEEecCCeecCCcccchhcCCCCCcEEEEeec
Q 016931 1 MRITVMTADEQII-SLD-VDPHETVENVKALLEVETQVPLQQQQLLYNGREMNNAEKLSALGVKDEDLVMMVSN 72 (380)
Q Consensus 1 M~ItVk~~~g~~~-~i~-V~~~~TV~~LK~~I~~~~gip~~~q~Li~~Gk~L~D~~tL~~~gI~dg~~I~l~~~ 72 (380)
|+|+|++.+|+.+ .++ |++++||.+||++|+.++|+|+++|+|+|+|+.|+|+++|++|||++|++||++.+
T Consensus 3 m~i~Vk~~~g~~~~~l~~v~~~~tv~~lK~~i~~~~gip~~~qrL~~~g~~L~d~~tL~~~~i~~g~~i~l~~r 76 (78)
T 2faz_A 3 MWIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQELFHVEPGLQRLFYRGKQMEDGHTLFDYEVRLNDTIQLLVR 76 (78)
T ss_dssp EEEEEEETTSSCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTTTTTCCTTCEEEEEEC
T ss_pred EEEEEEECCCCEEEEEeccCCCCCHHHHHHHHHHHHCcChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEe
Confidence 8999999999885 999 99999999999999999999999999999999999999999999999999999865
No 15
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=99.67 E-value=2.1e-16 Score=121.23 Aligned_cols=72 Identities=19% Similarity=0.445 Sum_probs=68.8
Q ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCCCcCeEEecCCeecCCcccchhcCCCCCcEEEEeecC
Q 016931 1 MRITVMTADEQIISLDVDPHETVENVKALLEVETQVPLQQQQLLYNGREMNNAEKLSALGVKDEDLVMMVSNA 73 (380)
Q Consensus 1 M~ItVk~~~g~~~~i~V~~~~TV~~LK~~I~~~~gip~~~q~Li~~Gk~L~D~~tL~~~gI~dg~~I~l~~~~ 73 (380)
|+|+|++ +|+.+.++|+++.||.+||++|+..+|+|+++|+|+|+|+.|+|+.+|++|||++|++||++.++
T Consensus 5 m~i~vk~-~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~~ 76 (77)
T 2bwf_A 5 LNIHIKS-GQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVESYHIQDGHSVHLVKSQ 76 (77)
T ss_dssp EEEEEEE-TTEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECC
T ss_pred EEEEEEE-CCEEEEEEECCCCcHHHHHHHHHHHhCCCHHHEEEEECCeEcCCCCCHHHcCCCCCCEEEEEEcC
Confidence 6899999 89999999999999999999999999999999999999999999999999999999999998753
No 16
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=99.66 E-value=3.8e-16 Score=119.13 Aligned_cols=72 Identities=32% Similarity=0.579 Sum_probs=69.9
Q ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCCCcCeEEecCCeecCCcccchhcCCCCCcEEEEeec
Q 016931 1 MRITVMTADEQIISLDVDPHETVENVKALLEVETQVPLQQQQLLYNGREMNNAEKLSALGVKDEDLVMMVSN 72 (380)
Q Consensus 1 M~ItVk~~~g~~~~i~V~~~~TV~~LK~~I~~~~gip~~~q~Li~~Gk~L~D~~tL~~~gI~dg~~I~l~~~ 72 (380)
|+|+|++.+|+.+.+++++++||.+||++|+.++|+|+++|+|+|+|+.|+|+.+|++|||++|++||++.+
T Consensus 1 M~i~vk~~~g~~~~i~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~g~~i~l~~~ 72 (76)
T 3a9j_A 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQRESTLHLVLR 72 (76)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTGGGTCCTTCEEEEEEC
T ss_pred CEEEEEcCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCeECCCCCcHHHcCCCCCCEEEEEEe
Confidence 899999999999999999999999999999999999999999999999999999999999999999999865
No 17
>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}
Probab=99.66 E-value=9.5e-17 Score=127.13 Aligned_cols=73 Identities=19% Similarity=0.327 Sum_probs=68.0
Q ss_pred CEEEEEeCCCCEEEEEe--CCCCCHHHHHHHH-HHHhCCCCcCeEEecCCeecCCcccchhcCC-CCCcEEEEeecC
Q 016931 1 MRITVMTADEQIISLDV--DPHETVENVKALL-EVETQVPLQQQQLLYNGREMNNAEKLSALGV-KDEDLVMMVSNA 73 (380)
Q Consensus 1 M~ItVk~~~g~~~~i~V--~~~~TV~~LK~~I-~~~~gip~~~q~Li~~Gk~L~D~~tL~~~gI-~dg~~I~l~~~~ 73 (380)
|+|+||+.+|+.+.++| ++++||.+||++| +.+.|+|+++|+|+|+||+|+|+.+|++|+| ++|++|+|+-.+
T Consensus 2 mqI~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~~Gk~L~D~~tL~~y~I~~~~stl~v~~~~ 78 (87)
T 2lxa_A 2 VHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKASHISEIKLLLKGKVLHDNLFLSDLKVTPANSTITVMIKP 78 (87)
T ss_dssp CEEEEEECSSSCEECCEECCTTCBHHHHHHHHHHTTSCSSSTTEEEEETTEECCTTCBHHHHCCCGGGCEEEEEECC
T ss_pred EEEEEEcCCCCEEEEEEcCCCCCcHHHHHHHHHHHhcCCChHHEEEEECCEECcCcCCHHHcCCCCCCCEEEEEcCC
Confidence 89999999999888865 4999999999999 9999999999999999999999999999999 699999998653
No 18
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=99.66 E-value=2.3e-16 Score=124.61 Aligned_cols=70 Identities=24% Similarity=0.451 Sum_probs=67.8
Q ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCCCcCeEEecCCeecCCcccchhcCCCCCcEEEEee
Q 016931 1 MRITVMTADEQIISLDVDPHETVENVKALLEVETQVPLQQQQLLYNGREMNNAEKLSALGVKDEDLVMMVS 71 (380)
Q Consensus 1 M~ItVk~~~g~~~~i~V~~~~TV~~LK~~I~~~~gip~~~q~Li~~Gk~L~D~~tL~~~gI~dg~~I~l~~ 71 (380)
|+|+|++.+|+.+.++|++++||.+||++|+.++|+|+++|+|+|+|+.|+|+.+|++||| +|++|||+.
T Consensus 18 m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i-~g~~i~lv~ 87 (88)
T 4eew_A 18 LEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYNV-GGKVIHLVE 87 (88)
T ss_dssp EEEEEEETTSCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTC-TTEEEEEEE
T ss_pred EEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEECCCCCcHHHcCC-CCcEEEEEE
Confidence 7899999999999999999999999999999999999999999999999999999999999 899999974
No 19
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=99.65 E-value=2.8e-16 Score=123.77 Aligned_cols=72 Identities=29% Similarity=0.520 Sum_probs=69.7
Q ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCCCcCeEEecCCeecCCcccchhcCCCCCcEEEEeec
Q 016931 1 MRITVMTADEQIISLDVDPHETVENVKALLEVETQVPLQQQQLLYNGREMNNAEKLSALGVKDEDLVMMVSN 72 (380)
Q Consensus 1 M~ItVk~~~g~~~~i~V~~~~TV~~LK~~I~~~~gip~~~q~Li~~Gk~L~D~~tL~~~gI~dg~~I~l~~~ 72 (380)
|+|+|++.+|+.+.++|++++||.+||++|+.++|+|+++|+|+|+|+.|+|+.+|++|||++|++|||+.+
T Consensus 13 m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~i~l~~r 84 (88)
T 3dbh_I 13 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLR 84 (88)
T ss_dssp EEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTSBGGGGTCCTTCEEEECCC
T ss_pred EEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcCHHHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEe
Confidence 789999999999999999999999999999999999999999999999999999999999999999999854
No 20
>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A
Probab=99.65 E-value=2.4e-16 Score=127.52 Aligned_cols=73 Identities=21% Similarity=0.345 Sum_probs=67.9
Q ss_pred CEEEEEeCCCCEEEE--EeCCCCCHHHHHHHH-HHHhCCCCcCeEEecCCeecCCcccchhcCC-CCCcEEEEeecC
Q 016931 1 MRITVMTADEQIISL--DVDPHETVENVKALL-EVETQVPLQQQQLLYNGREMNNAEKLSALGV-KDEDLVMMVSNA 73 (380)
Q Consensus 1 M~ItVk~~~g~~~~i--~V~~~~TV~~LK~~I-~~~~gip~~~q~Li~~Gk~L~D~~tL~~~gI-~dg~~I~l~~~~ 73 (380)
|+|+||+.+|+.|++ +|++++||.+||++| +.+.|+|+++|+|+|+|++|+|+.+|++||| ++|++|+|+.+.
T Consensus 20 m~I~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~~Gk~L~D~~tL~dy~I~~~g~ti~lmvsk 96 (98)
T 4a20_A 20 VHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKASHISEIKLLLKGKVLHDNLFLSDLKVTPANSTITVMIKP 96 (98)
T ss_dssp EEEEEEECSSSCEEEEEEECTTCBHHHHHHHHHHTTSCSCGGGEEEEETTEEECTTCBGGGSCCBTTBCEEEEEECC
T ss_pred EEEEEEcCCCCEEEEEEecCCCChHHHHHHHHHHHhcCCChhhEEEEECCEECcCcCCHHHcCcCCCCCEEEEEEeC
Confidence 789999999997766 667999999999999 8889999999999999999999999999999 999999998754
No 21
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=99.65 E-value=5.2e-16 Score=124.43 Aligned_cols=72 Identities=32% Similarity=0.583 Sum_probs=70.0
Q ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCCCcCeEEecCCeecCCcccchhcCCCCCcEEEEeec
Q 016931 1 MRITVMTADEQIISLDVDPHETVENVKALLEVETQVPLQQQQLLYNGREMNNAEKLSALGVKDEDLVMMVSN 72 (380)
Q Consensus 1 M~ItVk~~~g~~~~i~V~~~~TV~~LK~~I~~~~gip~~~q~Li~~Gk~L~D~~tL~~~gI~dg~~I~l~~~ 72 (380)
|+|+|++.+|+.+.++|++++||.+||++|+.++|+|+++|+|+|+|+.|+|+.+|++|||++|++|||+.+
T Consensus 2 m~i~vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~i~l~~r 73 (96)
T 3k9o_B 2 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 73 (96)
T ss_dssp CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEEC
T ss_pred cEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCChhHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEE
Confidence 899999999999999999999999999999999999999999999999999999999999999999999854
No 22
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=99.65 E-value=3.5e-16 Score=122.23 Aligned_cols=72 Identities=31% Similarity=0.568 Sum_probs=69.9
Q ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCCCcCeEEecCCeecCCcccchhcCCCCCcEEEEeec
Q 016931 1 MRITVMTADEQIISLDVDPHETVENVKALLEVETQVPLQQQQLLYNGREMNNAEKLSALGVKDEDLVMMVSN 72 (380)
Q Consensus 1 M~ItVk~~~g~~~~i~V~~~~TV~~LK~~I~~~~gip~~~q~Li~~Gk~L~D~~tL~~~gI~dg~~I~l~~~ 72 (380)
|+|+|++.+|+.+.++|++++||.+||++|+.++++|+++|+|+|+|+.|+|+.+|++|+|++|++|||+.+
T Consensus 4 m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~ip~~~qrL~~~g~~L~d~~tL~~~~i~~~~~i~l~~r 75 (85)
T 3n3k_B 4 MRIVVKTLMGRTIILEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIHNHSALYLLLK 75 (85)
T ss_dssp CEEEEECGGGCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETBEECCTTCBTTTTTCCTTCEEEEEEC
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCeECCCCCCHHHCCCCCCCEEEEEEe
Confidence 899999999999999999999999999999999999999999999999999999999999999999999864
No 23
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=99.65 E-value=4.7e-16 Score=125.67 Aligned_cols=72 Identities=28% Similarity=0.540 Sum_probs=69.9
Q ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCCCcCeEEecCCeecCCcccchhcCCCCCcEEEEeec
Q 016931 1 MRITVMTADEQIISLDVDPHETVENVKALLEVETQVPLQQQQLLYNGREMNNAEKLSALGVKDEDLVMMVSN 72 (380)
Q Consensus 1 M~ItVk~~~g~~~~i~V~~~~TV~~LK~~I~~~~gip~~~q~Li~~Gk~L~D~~tL~~~gI~dg~~I~l~~~ 72 (380)
|+|+|++.+|+.+.++|++++||.+||++|+.++|+|+++|+|+|+|+.|+|+++|++|||++|++|||+.+
T Consensus 23 m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~i~l~~r 94 (98)
T 4hcn_B 23 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 94 (98)
T ss_dssp CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTCBSGGGTCCTTEEEEEECB
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEe
Confidence 899999999999999999999999999999999999999999999999999999999999999999999854
No 24
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=99.65 E-value=2.5e-16 Score=124.73 Aligned_cols=72 Identities=19% Similarity=0.216 Sum_probs=69.7
Q ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCCCcCeEEecCCeecCCcccchhcCCCCCcEEEEeec
Q 016931 1 MRITVMTADEQIISLDVDPHETVENVKALLEVETQVPLQQQQLLYNGREMNNAEKLSALGVKDEDLVMMVSN 72 (380)
Q Consensus 1 M~ItVk~~~g~~~~i~V~~~~TV~~LK~~I~~~~gip~~~q~Li~~Gk~L~D~~tL~~~gI~dg~~I~l~~~ 72 (380)
|+|+|++.+|+.+.++|++++||.+||++|+.++|+|+++|+|+|+|+.|+|+++|++|||++|++|+|+.+
T Consensus 5 m~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~~I~~g~~i~l~~~ 76 (88)
T 2hj8_A 5 LSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLR 76 (88)
T ss_dssp EEEEEEETTSCEEEEEEESSSBHHHHHHHHHHHTCSCTTTEEEESSSSCCCTTSBHHHHHCSTTCEEEEEEC
T ss_pred EEEEEECCCCCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEE
Confidence 789999999999999999999999999999999999999999999999999999999999999999999865
No 25
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=4.8e-16 Score=120.39 Aligned_cols=72 Identities=28% Similarity=0.473 Sum_probs=69.4
Q ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCCCcCeEEecCCeecCCcccchhcCCCCCcEEEEeec
Q 016931 1 MRITVMTADEQIISLDVDPHETVENVKALLEVETQVPLQQQQLLYNGREMNNAEKLSALGVKDEDLVMMVSN 72 (380)
Q Consensus 1 M~ItVk~~~g~~~~i~V~~~~TV~~LK~~I~~~~gip~~~q~Li~~Gk~L~D~~tL~~~gI~dg~~I~l~~~ 72 (380)
|+|+|++.+|+.+.++|++++||.+||++|+.++|+|+++|+|+|+|+.|+|+.+|++|||++|++||++.+
T Consensus 8 m~i~vk~~~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~ 79 (81)
T 2dzi_A 8 MQLTVKALQGRECSLQVPEDELVSTLKQLVSEKLNVPVRQQRLLFKGKALADGKRLSDYSIGPNSKLNLVVK 79 (81)
T ss_dssp EEEEEEETTSCEEEEEECSSCBHHHHHHHHHHHTCCCTTTCEEEETTEECCTTSBGGGGTCCSSBCCEEECC
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEe
Confidence 789999999999999999999999999999999999999999999999999999999999999999999864
No 26
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=99.64 E-value=6.2e-16 Score=122.49 Aligned_cols=72 Identities=22% Similarity=0.529 Sum_probs=69.5
Q ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCCCcCeEEecCCeecCCcccchhcCCCCCcEEEEeec
Q 016931 1 MRITVMTADEQIISLDVDPHETVENVKALLEVETQVPLQQQQLLYNGREMNNAEKLSALGVKDEDLVMMVSN 72 (380)
Q Consensus 1 M~ItVk~~~g~~~~i~V~~~~TV~~LK~~I~~~~gip~~~q~Li~~Gk~L~D~~tL~~~gI~dg~~I~l~~~ 72 (380)
|+|+|++.+|+.+.++|++++||.+||++|+.++|+|+++|+|+|+|+.|+|+.+|++|||++|++|+|+.+
T Consensus 10 ~~i~v~~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~r 81 (88)
T 1sif_A 10 LQLFIKTLTGKTFTVEMEPSDTIENLKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 81 (88)
T ss_dssp CEEEEEETTSCEEEEECCTTSBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBSGGGTCCTTCEEEEEC-
T ss_pred eEEEEEeCCCCEEEEEECCCChHHHHHHHHHHHHCcChhhEEEEECCEECCCCCcHHHcCCCCCCEEEEEEe
Confidence 899999999999999999999999999999999999999999999999999999999999999999999854
No 27
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=99.64 E-value=6.1e-16 Score=120.78 Aligned_cols=72 Identities=29% Similarity=0.553 Sum_probs=69.9
Q ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCCCcCeEEecCCeecCCcccchhcCCCCCcEEEEeec
Q 016931 1 MRITVMTADEQIISLDVDPHETVENVKALLEVETQVPLQQQQLLYNGREMNNAEKLSALGVKDEDLVMMVSN 72 (380)
Q Consensus 1 M~ItVk~~~g~~~~i~V~~~~TV~~LK~~I~~~~gip~~~q~Li~~Gk~L~D~~tL~~~gI~dg~~I~l~~~ 72 (380)
|+|+|++.+|+.+.+++++++||.+||++|+.++++|+++|+|+|+|+.|+|+.+|++|+|++|++|||+.+
T Consensus 4 m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~qrL~~~g~~L~d~~tL~~~~i~~~~~l~l~~r 75 (85)
T 3mtn_B 4 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKWSTLFLLLR 75 (85)
T ss_dssp EEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTGGGTCCTTCEEEEECC
T ss_pred EEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcChHHEEEEECCEECCCCCCHHHcCCCCCCEEEEEEE
Confidence 799999999999999999999999999999999999999999999999999999999999999999999854
No 28
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=99.64 E-value=3.9e-16 Score=120.70 Aligned_cols=72 Identities=18% Similarity=0.419 Sum_probs=69.7
Q ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCCCcCeEEecCCeecCCcccchhcCCCCCcEEEEeec
Q 016931 1 MRITVMTADEQIISLDVDPHETVENVKALLEVETQVPLQQQQLLYNGREMNNAEKLSALGVKDEDLVMMVSN 72 (380)
Q Consensus 1 M~ItVk~~~g~~~~i~V~~~~TV~~LK~~I~~~~gip~~~q~Li~~Gk~L~D~~tL~~~gI~dg~~I~l~~~ 72 (380)
|+|+|++.+|+.+.++|++++||.+||++|+.+.|+|+++|+|+|+|+.|+|++||++|||++|++||++.+
T Consensus 4 m~i~vk~~~g~~~~~~v~~~~tv~~lk~~i~~~~gi~~~~qrL~~~G~~L~d~~tl~~~~i~~~~~i~l~~~ 75 (79)
T 2uyz_B 4 IKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQE 75 (79)
T ss_dssp EEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCHHHHTCCTTEEEEEEEC
T ss_pred EEEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCCCcccEEEEECCEEeCCCCCHHHcCCCCCCEEEEEEe
Confidence 789999999999999999999999999999999999999999999999999999999999999999999864
No 29
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.64 E-value=4.6e-16 Score=127.62 Aligned_cols=74 Identities=18% Similarity=0.289 Sum_probs=70.8
Q ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCCCcCeEEecCCeecCCcccchhcCCCCCcEEEEeecCC
Q 016931 1 MRITVMTADEQIISLDVDPHETVENVKALLEVETQVPLQQQQLLYNGREMNNAEKLSALGVKDEDLVMMVSNAA 74 (380)
Q Consensus 1 M~ItVk~~~g~~~~i~V~~~~TV~~LK~~I~~~~gip~~~q~Li~~Gk~L~D~~tL~~~gI~dg~~I~l~~~~~ 74 (380)
|+|+|++.+|+.+.++|++++||.+||.+|+.++|+|+++|+|+|+|+.|+|+++|++|||++|++|||+.+.+
T Consensus 24 m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~g~ti~lv~~~~ 97 (106)
T 1ttn_A 24 CQLRLRLSTGKDLKLVVRSTDTVFHMKRRLHAAEGVEPGSQRWFFSGRPLTDKMKFEELKIPKDYVVQVIVSQP 97 (106)
T ss_dssp EEEEEEETTTEEEEEEECTTSHHHHHHHHHHHTTCCCSTTCEEEETTEECCTTSHHHHCCCSSSCEEEEECCCS
T ss_pred EEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHHCcCcccEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCC
Confidence 78999999999999999999999999999999999999999999999999999999999999999999997543
No 30
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.64 E-value=6.5e-16 Score=121.54 Aligned_cols=72 Identities=21% Similarity=0.406 Sum_probs=69.8
Q ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCCCcCeEEecCCeecCCcccchhcCCCCCcEEEEeec
Q 016931 1 MRITVMTADEQIISLDVDPHETVENVKALLEVETQVPLQQQQLLYNGREMNNAEKLSALGVKDEDLVMMVSN 72 (380)
Q Consensus 1 M~ItVk~~~g~~~~i~V~~~~TV~~LK~~I~~~~gip~~~q~Li~~Gk~L~D~~tL~~~gI~dg~~I~l~~~ 72 (380)
|+|+|++.+|+.+.++|++++||.+||++|+.++|+|+++|+|+|+|+.|+|+++|++|||++|++|||+.+
T Consensus 8 m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~~Gk~L~d~~tL~~~~i~~g~~i~l~~~ 79 (87)
T 1wh3_A 8 IQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLEFQGQVLQDWLGLGIYGIQDSDTLILSKK 79 (87)
T ss_dssp EEEEEEETTTEEEEEEECSSSBHHHHHHHHHHHTCCCTTTEEEEETTEECCSSSBHHHHTCCTTEEEEEEEC
T ss_pred EEEEEEcCCCCEEEEEeCCCChHHHHHHHHHHHhCCChHHEEEEECCEEccCCCCHHHCCCCCCCEEEEEEe
Confidence 789999999999999999999999999999999999999999999999999999999999999999999865
No 31
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.63 E-value=1.3e-15 Score=120.48 Aligned_cols=72 Identities=25% Similarity=0.373 Sum_probs=69.0
Q ss_pred CEEEEEeCCC-CEEEE-EeCCCCCHHHHHHHHHHHhCCCCcCeEEecCCeecCCcccchhcCCCCCcEEEEeec
Q 016931 1 MRITVMTADE-QIISL-DVDPHETVENVKALLEVETQVPLQQQQLLYNGREMNNAEKLSALGVKDEDLVMMVSN 72 (380)
Q Consensus 1 M~ItVk~~~g-~~~~i-~V~~~~TV~~LK~~I~~~~gip~~~q~Li~~Gk~L~D~~tL~~~gI~dg~~I~l~~~ 72 (380)
|+|+|++.+| +.+.+ +|++++||.+||++|+.++|+|+++|+|+|+|+.|+|+++|++|||++|++|||+.+
T Consensus 8 m~i~Vk~~~g~~~~~l~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~ 81 (89)
T 1wy8_A 8 MWIQVRTIDGSKTCTIEDVSRKATIEELRERVWALFDVRPECQRLFYRGKQLENGYTLFDYDVGLNDIIQLLVR 81 (89)
T ss_dssp EEEEEEETTCSCEEEEEEECTTCBHHHHHHHHHHHSCCCTTTEEEEETTEECCSSSBHHHHTCCTTCEEEEEEC
T ss_pred EEEEEEECCCCceEEEEecCCCCCHHHHHHHHHHHHCcChhhEEEEECCeECCCCCCHHHCCCCCCCEEEEEEe
Confidence 7999999999 79999 599999999999999999999999999999999999999999999999999999865
No 32
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.63 E-value=8.3e-16 Score=125.17 Aligned_cols=73 Identities=30% Similarity=0.515 Sum_probs=68.0
Q ss_pred CEEEEEeCCC----CEEEEEeCCCCCHHHHHHHHHHHhCCCCcCeEEecCCeecCCc-ccchhcCCCCCcEEEEeecC
Q 016931 1 MRITVMTADE----QIISLDVDPHETVENVKALLEVETQVPLQQQQLLYNGREMNNA-EKLSALGVKDEDLVMMVSNA 73 (380)
Q Consensus 1 M~ItVk~~~g----~~~~i~V~~~~TV~~LK~~I~~~~gip~~~q~Li~~Gk~L~D~-~tL~~~gI~dg~~I~l~~~~ 73 (380)
|+|+|++..+ +.+.++|++++||++||++|+.++|+|+++|+|+|+|+.|+|+ ++|++|||++|++|||+.+.
T Consensus 8 m~I~Vk~~~~~~~~~~~~i~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~gk~L~D~~~tL~~ygI~~g~~l~l~~~~ 85 (102)
T 1v5o_A 8 MLITVYCVRRDLTEVTFSLQVNPDFELSNFRVLCELESGVPAEEAQIVYMEQLLTDDHCSLGSYGLKDGDMVVLLQKD 85 (102)
T ss_dssp EEEEEEECCCCCCCCEEEEEECTTCBHHHHHHHHHHHTCCCGGGBCEEETTEEECCSSSBHHHHTCCTTEEEEECBCC
T ss_pred EEEEEEECCCCcCceEEEEEcCCCCCHHHHHHHHHHHHCcChHHeEEEECCEECCCCcccHHHCCCCCCCEEEEEECC
Confidence 7899999754 7899999999999999999999999999999999999999988 79999999999999998653
No 33
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.63 E-value=6.7e-16 Score=124.96 Aligned_cols=73 Identities=15% Similarity=0.181 Sum_probs=66.6
Q ss_pred EEEEeCC----CCEEEEEeCCCCCHHHHHHHHHHHhCCCCcCeEEecCCeecCCcccchhcCCCCCcEEEEeecCCC
Q 016931 3 ITVMTAD----EQIISLDVDPHETVENVKALLEVETQVPLQQQQLLYNGREMNNAEKLSALGVKDEDLVMMVSNAAS 75 (380)
Q Consensus 3 ItVk~~~----g~~~~i~V~~~~TV~~LK~~I~~~~gip~~~q~Li~~Gk~L~D~~tL~~~gI~dg~~I~l~~~~~~ 75 (380)
|.|++.+ ++.+.++|++++||.+||++|+.++|+|+++|+|+|+||+|+|++||++|||++|++|+++...+.
T Consensus 18 i~V~~~~~~~~~~~~~lev~~~~TV~~lK~kI~~k~gip~~qQrLI~~GKiL~D~~TL~~y~I~~gsti~vl~lrg~ 94 (100)
T 1wju_A 18 IEVFLPPRLKKDRKNLLETRLHITGRELRSKIAETFGLQENYIKIVINKKQLQLGKTLEEQGVAHNVKAMVLELKQS 94 (100)
T ss_dssp EEEECCTTTCCSSSEEEEEESSSBHHHHHHHHHHHTTCCSTTCEEEETTEECCTTSBHHHHTCCSSEEEEEECCCCC
T ss_pred EEEEecCCCCCCcEEEEEeCCcCHHHHHHHHHHHHHCcCHHHeEEEeCCeECCCCCcHHHcCCCCCCEEEEEEECCC
Confidence 5666666 778999999999999999999999999999999999999999999999999999999988865443
No 34
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=99.62 E-value=1.6e-15 Score=122.35 Aligned_cols=72 Identities=32% Similarity=0.583 Sum_probs=70.0
Q ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCCCcCeEEecCCeecCCcccchhcCCCCCcEEEEeec
Q 016931 1 MRITVMTADEQIISLDVDPHETVENVKALLEVETQVPLQQQQLLYNGREMNNAEKLSALGVKDEDLVMMVSN 72 (380)
Q Consensus 1 M~ItVk~~~g~~~~i~V~~~~TV~~LK~~I~~~~gip~~~q~Li~~Gk~L~D~~tL~~~gI~dg~~I~l~~~ 72 (380)
|+|+|++.+|+.+.++|++++||.+||++|+.++|+|+++|+|+|+|+.|+|+.+|++|||++|++|+|+.+
T Consensus 1 M~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gi~~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~~ 72 (98)
T 1yx5_B 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 72 (98)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHTCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEEC
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEe
Confidence 999999999999999999999999999999999999999999999999999999999999999999999865
No 35
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=99.62 E-value=1.1e-15 Score=122.61 Aligned_cols=72 Identities=22% Similarity=0.461 Sum_probs=68.4
Q ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCCCcCeEEecCCeecCCc-ccchhcCCCCCcEEEEeecC
Q 016931 1 MRITVMTADEQIISLDVDPHETVENVKALLEVETQVPLQQQQLLYNGREMNNA-EKLSALGVKDEDLVMMVSNA 73 (380)
Q Consensus 1 M~ItVk~~~g~~~~i~V~~~~TV~~LK~~I~~~~gip~~~q~Li~~Gk~L~D~-~tL~~~gI~dg~~I~l~~~~ 73 (380)
|+|+|++.++ .+.++|++++||.+||++|+.++|+|+++|+|+|+|+.|+|+ ++|++|||++|++|+|+.+.
T Consensus 16 ~~I~Vk~~~~-~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~~tL~~ygI~~gstl~lv~r~ 88 (94)
T 2kan_A 16 IHVTVKFPSK-QFTVEVDRTETVSSLKDKIHIVENTPIKRMQLYYSGIELADDYRNLNEYGITEFSEIVVFLKS 88 (94)
T ss_dssp EEEEEECSSC-EEEEEECTTCBHHHHHHHHHHHSSSCTTTEEEEETTEEECCTTSBHHHHTCCTTEEEEEEECC
T ss_pred EEEEEEcCCc-EEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEECCEECCCCcccHHHCCCCCCCEEEEEEeC
Confidence 6899999877 899999999999999999999999999999999999999999 99999999999999998653
No 36
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=99.62 E-value=1.9e-15 Score=122.91 Aligned_cols=73 Identities=22% Similarity=0.340 Sum_probs=69.2
Q ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCCCcCeEEecCCeecCCcccchhcCCCCCcEEEEeecCC
Q 016931 1 MRITVMTADEQIISLDVDPHETVENVKALLEVETQVPLQQQQLLYNGREMNNAEKLSALGVKDEDLVMMVSNAA 74 (380)
Q Consensus 1 M~ItVk~~~g~~~~i~V~~~~TV~~LK~~I~~~~gip~~~q~Li~~Gk~L~D~~tL~~~gI~dg~~I~l~~~~~ 74 (380)
|+|+|++. |+.+.++|++++||.+||++|+.++|+|+++|+|+|+|+.|+|+++|++|||++|++|+|+.+..
T Consensus 26 m~I~Vk~~-g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~gI~~g~~I~l~~~~~ 98 (101)
T 2klc_A 26 MKVTVKTP-KEKEEFAVPENSSVQQFKEEISKRFKSHTDQLVLIFAGKILKDQDTLSQHGIHDGLTVHLVIKTQ 98 (101)
T ss_dssp EEEEEECS-SCEEEEEECSCCCHHHHHHHHHHHHTCCGGGEEEEETTEEECTTCCTGGGTCCTTCEEEEEECCS
T ss_pred EEEEEEeC-CcEEEEEECCCCCHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcHHHcCCCCCCEEEEEEcCC
Confidence 78999998 88999999999999999999999999999999999999999999999999999999999987643
No 37
>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.61 E-value=2e-15 Score=120.71 Aligned_cols=72 Identities=21% Similarity=0.303 Sum_probs=68.0
Q ss_pred CEEEEEeCCCC--EEEEEeCCCCCHHHHHHHHHHHh--CCCCcCeEEecCCeecCCcccchhc--CCCCCcEEEEeec
Q 016931 1 MRITVMTADEQ--IISLDVDPHETVENVKALLEVET--QVPLQQQQLLYNGREMNNAEKLSAL--GVKDEDLVMMVSN 72 (380)
Q Consensus 1 M~ItVk~~~g~--~~~i~V~~~~TV~~LK~~I~~~~--gip~~~q~Li~~Gk~L~D~~tL~~~--gI~dg~~I~l~~~ 72 (380)
|+|+|++.+++ .+.+++++++||.+||++|+.++ ++|+++|+|+|+|++|+|+.+|++| +|++|++|||+.+
T Consensus 8 m~i~Vk~~~~~~~~~~v~v~~~~TV~~lK~~I~~~~~~~i~~~~QrLi~~Gk~L~D~~tL~~~~~~i~~~~~i~lv~~ 85 (93)
T 1wgd_A 8 VTLLVKSPNQRHRDLELSGDRGWSVGHLKAHLSRVYPERPRPEDQRLIYSGKLLLDHQCLRDLLPKQEKRHVLHLVCN 85 (93)
T ss_dssp CEEEEECSSSSCCCEEEECCTTSCHHHHHHHHHHHSTTCCCTTTCEEEETTEECCSSSCHHHHSCSSSCSEEEEEECC
T ss_pred EEEEEEeCCCCeEEEEEecCCCCcHHHHHHHHHHHhcCCCChHHeEEEECCEECcCcCCHHHHhcCCCCCCEEEEEeC
Confidence 78999999888 67788889999999999999999 9999999999999999999999999 9999999999865
No 38
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C
Probab=99.61 E-value=1.2e-15 Score=123.20 Aligned_cols=72 Identities=18% Similarity=0.419 Sum_probs=69.7
Q ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCCCcCeEEecCCeecCCcccchhcCCCCCcEEEEeec
Q 016931 1 MRITVMTADEQIISLDVDPHETVENVKALLEVETQVPLQQQQLLYNGREMNNAEKLSALGVKDEDLVMMVSN 72 (380)
Q Consensus 1 M~ItVk~~~g~~~~i~V~~~~TV~~LK~~I~~~~gip~~~q~Li~~Gk~L~D~~tL~~~gI~dg~~I~l~~~ 72 (380)
|+|+|++.+|+.+.++|.+++||.+||++|+.+.|+|+++|+|+|+|+.|.|+.||++|+|++|++|||+.+
T Consensus 22 m~I~Vk~~~g~~~~l~v~~~~tv~~lK~~i~~~~gip~~~qrLif~Gk~L~d~~tl~dy~i~~g~~I~l~~~ 93 (97)
T 1wyw_B 22 IKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQE 93 (97)
T ss_dssp EEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCHHHHTCCTTCEEEEEES
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEECCeEcCCCCCHHHCCCCCCCEEEEEEe
Confidence 789999999999999999999999999999999999999999999999999999999999999999999864
No 39
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=99.61 E-value=1.7e-15 Score=122.96 Aligned_cols=74 Identities=20% Similarity=0.347 Sum_probs=69.1
Q ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCCCcCeEEecCCeecCCcccchhcCCCCCcEEEEeecCCC
Q 016931 1 MRITVMTADEQIISLDVDPHETVENVKALLEVETQVPLQQQQLLYNGREMNNAEKLSALGVKDEDLVMMVSNAAS 75 (380)
Q Consensus 1 M~ItVk~~~g~~~~i~V~~~~TV~~LK~~I~~~~gip~~~q~Li~~Gk~L~D~~tL~~~gI~dg~~I~l~~~~~~ 75 (380)
|+|+|++.+|+ +.++|++++||.+||++|+.++|+|+++|+|+|+|+.|+|+++|++|||++|++|+|+.+..+
T Consensus 23 m~I~Vk~~~g~-~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~r~~~ 96 (100)
T 1yqb_A 23 IKVTVKTPKDK-EDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQCGVRDGLTVHLVIKRQH 96 (100)
T ss_dssp EEEEEECSSCE-EEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBHHHHTCCTTCEEEEEECCCC
T ss_pred EEEEEEcCCCc-EEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcHHHCCCCCCCEEEEEEcCCC
Confidence 78999998886 799999999999999999999999999999999999999999999999999999999976433
No 40
>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.60 E-value=7.9e-16 Score=125.86 Aligned_cols=72 Identities=21% Similarity=0.366 Sum_probs=67.4
Q ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCCC---------------cCeEEecCCeecC-CcccchhcCCCCC
Q 016931 1 MRITVMTADEQIISLDVDPHETVENVKALLEVETQVPL---------------QQQQLLYNGREMN-NAEKLSALGVKDE 64 (380)
Q Consensus 1 M~ItVk~~~g~~~~i~V~~~~TV~~LK~~I~~~~gip~---------------~~q~Li~~Gk~L~-D~~tL~~~gI~dg 64 (380)
|+|+|++++|+.++++|++++||.+||++|+.++++|+ ++|+|+|+|+.|. |++||++|||++|
T Consensus 8 M~I~Vk~l~g~~~~v~V~~~~TV~dLK~~I~~~~~i~~~~q~g~~~isw~~~w~q~~Li~~Gk~L~dD~~tL~dygI~~g 87 (105)
T 1v2y_A 8 MTVRVCKMDGEVMPVVVVQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLTSAGEKLTEDRKKLRDYGIRNR 87 (105)
T ss_dssp EEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHTTEEEESSSCEECCSSSBHHHHTCCSS
T ss_pred EEEEEEecCCCEEEEEECCCChHHHHHHHHHHHhCCCcccccCcceeeeeecceeEEEEeCCcCccCCcCCHHHcCCCCC
Confidence 89999999999999999999999999999999999988 3579999999997 5699999999999
Q ss_pred cEEEEeec
Q 016931 65 DLVMMVSN 72 (380)
Q Consensus 65 ~~I~l~~~ 72 (380)
++||++..
T Consensus 88 ~~l~lv~~ 95 (105)
T 1v2y_A 88 DEVSFIKK 95 (105)
T ss_dssp EEEEEEEC
T ss_pred CEEEEEeh
Confidence 99999964
No 41
>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A
Probab=99.39 E-value=7e-17 Score=123.81 Aligned_cols=72 Identities=18% Similarity=0.357 Sum_probs=69.5
Q ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCCCcCeEEecCCeecCCcccchhcCCCCCcEEEEeec
Q 016931 1 MRITVMTADEQIISLDVDPHETVENVKALLEVETQVPLQQQQLLYNGREMNNAEKLSALGVKDEDLVMMVSN 72 (380)
Q Consensus 1 M~ItVk~~~g~~~~i~V~~~~TV~~LK~~I~~~~gip~~~q~Li~~Gk~L~D~~tL~~~gI~dg~~I~l~~~ 72 (380)
|+|+|++.+|+.+.++|++++||.+||++|+..+|+|+++|+|+|+|+.|+|+.+|++|||++|++||++.+
T Consensus 1 M~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~r 72 (76)
T 3b1l_X 1 MIVFVRFNSSYGFPVEVDSDTSILQLKEVVAKQQGVPADQLRVIFAGKELPNHLTVQNCDLEQQSIVHIVQR 72 (76)
Confidence 899999999999999999999999999999999999999999999999999999999999999999999754
No 42
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.60 E-value=1.7e-15 Score=121.71 Aligned_cols=72 Identities=18% Similarity=0.299 Sum_probs=68.8
Q ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCCCcCeEEecCCeecCCcccchhcCCCCCcEEEEeecC
Q 016931 1 MRITVMTADEQIISLDVDPHETVENVKALLEVETQVPLQQQQLLYNGREMNNAEKLSALGVKDEDLVMMVSNA 73 (380)
Q Consensus 1 M~ItVk~~~g~~~~i~V~~~~TV~~LK~~I~~~~gip~~~q~Li~~Gk~L~D~~tL~~~gI~dg~~I~l~~~~ 73 (380)
|+|+|++. |+.+.++|++++||.+||++|+.++|+|+++|+|+|+|+.|+|+++|++|||++|++|||+.+.
T Consensus 18 m~i~Vk~~-g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~ 89 (96)
T 1wx8_A 18 IRVSVKTP-QDCHEFFLAENSNVRRFKKQISKYLHCNADRLVLIFTGKILRDQDILSQRGILDGSTVHVVVRS 89 (96)
T ss_dssp EEEEEECS-SSEEEEEEETTCCHHHHHHHHHHHTCSCTTTBCCEETTEECCTTSCHHHHTCCTTEEEECCBCC
T ss_pred EEEEEEEC-CeEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEECCCcCCHHHCCCCCCCEEEEEEeC
Confidence 78999998 8999999999999999999999999999999999999999999999999999999999998653
No 43
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.60 E-value=4.4e-15 Score=121.63 Aligned_cols=72 Identities=21% Similarity=0.358 Sum_probs=68.0
Q ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCCCcCeEEecCCeecCCcccchhcCCCCCcEEEEeecC
Q 016931 1 MRITVMTADEQIISLDVDPHETVENVKALLEVETQVPLQQQQLLYNGREMNNAEKLSALGVKDEDLVMMVSNA 73 (380)
Q Consensus 1 M~ItVk~~~g~~~~i~V~~~~TV~~LK~~I~~~~gip~~~q~Li~~Gk~L~D~~tL~~~gI~dg~~I~l~~~~ 73 (380)
|+|+|++.+|+ +.++|++++||.+||++|+.++|+|+++|+|+|+|+.|+|+++|++|||++|++|||+.+.
T Consensus 18 m~I~Vk~~~g~-~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~ 89 (106)
T 1wx7_A 18 IKVTVKTPKDK-EDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQCGVRDGLTVHLVIKR 89 (106)
T ss_dssp EEEEEECSSCE-EEEEEETTCCHHHHHHHHHHHHTCCTTTEEEEETTEECCTTSCHHHHTCCTTEEEEEEECC
T ss_pred EEEEEEeCCCc-EEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcHHHcCCCCCCEEEEEEcC
Confidence 78999998886 7899999999999999999999999999999999999999999999999999999999643
No 44
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=99.60 E-value=2.8e-15 Score=123.98 Aligned_cols=72 Identities=32% Similarity=0.583 Sum_probs=69.9
Q ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCCCcCeEEecCCeecCCcccchhcCCCCCcEEEEeec
Q 016931 1 MRITVMTADEQIISLDVDPHETVENVKALLEVETQVPLQQQQLLYNGREMNNAEKLSALGVKDEDLVMMVSN 72 (380)
Q Consensus 1 M~ItVk~~~g~~~~i~V~~~~TV~~LK~~I~~~~gip~~~q~Li~~Gk~L~D~~tL~~~gI~dg~~I~l~~~ 72 (380)
|+|+|++.+|+.+.++|++++||.+||.+|+.++|+|+++|+|+|+|+.|+|+++|++|||++|++|||+.+
T Consensus 36 m~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~gI~~gs~I~l~~r 107 (111)
T 3vdz_A 36 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 107 (111)
T ss_dssp EEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTTTTTCCTTCEEEEEEC
T ss_pred EEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCChHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEe
Confidence 789999999999999999999999999999999999999999999999999999999999999999999864
No 45
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=99.59 E-value=2.5e-15 Score=120.28 Aligned_cols=70 Identities=20% Similarity=0.332 Sum_probs=67.4
Q ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCCCcCeEEecCCeecCCcccchhcCCCCCcEEEEeec
Q 016931 1 MRITVMTADEQIISLDVDPHETVENVKALLEVETQVPLQQQQLLYNGREMNNAEKLSALGVKDEDLVMMVSN 72 (380)
Q Consensus 1 M~ItVk~~~g~~~~i~V~~~~TV~~LK~~I~~~~gip~~~q~Li~~Gk~L~D~~tL~~~gI~dg~~I~l~~~ 72 (380)
|+|+|++ |+.+.++|++++||.+||++|+.++|+|+++|+|+|+|+.|+|+++|++|||++|++|+|+.+
T Consensus 20 m~I~Vk~--g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~y~I~~gstI~lv~r 89 (93)
T 2l7r_A 20 MQLFVRA--QELHTFEVTGQETVAQIKAHVASLEGIAPEDQVVLLAGAPLEDEATLGQCGVEALTTLEVAGR 89 (93)
T ss_dssp CEEEEES--SSEEEEECCSSCBHHHHHHHHHHHHTCCGGGCEEEETTEECCTTSBHHHHTCCSSCEEEEECC
T ss_pred EEEEEEC--CCEEEEEeCCCCcHHHHHHHHHHHhCcChhHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEe
Confidence 7999998 799999999999999999999999999999999999999999999999999999999999854
No 46
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A
Probab=99.59 E-value=2.6e-15 Score=119.47 Aligned_cols=73 Identities=30% Similarity=0.373 Sum_probs=68.9
Q ss_pred CEEEEEeCCCCEEEE-EeCCCCCHHHHHHHHHHHhCCCCcCeEEe---cCCeecCCcccchhcCCCCCcEEEEeecCC
Q 016931 1 MRITVMTADEQIISL-DVDPHETVENVKALLEVETQVPLQQQQLL---YNGREMNNAEKLSALGVKDEDLVMMVSNAA 74 (380)
Q Consensus 1 M~ItVk~~~g~~~~i-~V~~~~TV~~LK~~I~~~~gip~~~q~Li---~~Gk~L~D~~tL~~~gI~dg~~I~l~~~~~ 74 (380)
|+|+|++ .|+.+.+ +|++++||.+||++|+.++|+|+++|+|+ |+|++|+|+.+|++|||++|++|||+..+.
T Consensus 8 m~i~Vk~-~g~~~~i~~v~~~~TV~~lK~~I~~~~gip~~~QkLi~~k~~Gk~L~D~~~L~~~~i~~g~~l~l~~~~~ 84 (90)
T 1v5t_A 8 LPIIVKW-GGQEYSVTTLSEDDTVLDLKQFLKTLTGVLPERQKLLGLKVKGKPAENDVKLGALKLKPNTKIMMMGTRE 84 (90)
T ss_dssp CCEEEEE-TTEEEEECSCCSSSBHHHHHHHHHHHTCCCTTTCEEESCEETTEECCTTSBHHHHTCCTTEEEEEECCCS
T ss_pred EEEEEEE-CCEEEEEEEeCCCCCHHHHHHHHHHHHCcCHHHeEEEeeccCCcCcCCCCCHHHcCCCCCCEEEEEecCc
Confidence 7899997 7889999 99999999999999999999999999999 999999999999999999999999996543
No 47
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.58 E-value=5.2e-15 Score=117.94 Aligned_cols=74 Identities=27% Similarity=0.474 Sum_probs=67.7
Q ss_pred CEEEEEeCCCCEEEEEeCCC-----CCHHHHHHHHHHHhCCCCcCeEEecCCeecCC-cccchhcCCCCCcEEEEeecCC
Q 016931 1 MRITVMTADEQIISLDVDPH-----ETVENVKALLEVETQVPLQQQQLLYNGREMNN-AEKLSALGVKDEDLVMMVSNAA 74 (380)
Q Consensus 1 M~ItVk~~~g~~~~i~V~~~-----~TV~~LK~~I~~~~gip~~~q~Li~~Gk~L~D-~~tL~~~gI~dg~~I~l~~~~~ 74 (380)
|+|+|++ .|+.+.++|+++ .||.+||++|+..+|+|+++|+|+|+|+.|+| +.+|++|||++|++|||+..+.
T Consensus 8 ~~v~Vk~-~~~~~~i~v~~~~~~~~~TV~~LK~~i~~~~gip~~~qrL~~~Gk~L~D~~~~L~~~~i~~g~~i~l~~~~~ 86 (92)
T 1wxv_A 8 LTVTVTH-SNEKHDLHVTSQQGSSEPVVQDLAQVVEEVIGVPQSFQKLIFKGKSLKEMETPLSALGIQDGCRVMLIGKKN 86 (92)
T ss_dssp EEEEEEC-SSSEEEEEECCCSSSSSCBHHHHHHHHHHHTCCCTTTCEEEETTEEECCSSSBHHHHTCCSSEEEEEESCCS
T ss_pred EEEEEEE-CCEEEEEEECCCcCcccCcHHHHHHHHHHHHCcCHHHEEEEECCeecCCCcccHHHCCCCCCCEEEEEecCC
Confidence 6899998 578899999995 99999999999999999999999999999998 5689999999999999997644
Q ss_pred C
Q 016931 75 S 75 (380)
Q Consensus 75 ~ 75 (380)
+
T Consensus 87 ~ 87 (92)
T 1wxv_A 87 S 87 (92)
T ss_dssp C
T ss_pred C
Confidence 3
No 48
>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.58 E-value=4.9e-15 Score=121.66 Aligned_cols=75 Identities=21% Similarity=0.335 Sum_probs=68.9
Q ss_pred CEEEEEeCCC---CEEEEEeCC---------CCCHHHHHHHHHHHh--CCCCcC-eEEecCCeecCCcccchhcCCCCCc
Q 016931 1 MRITVMTADE---QIISLDVDP---------HETVENVKALLEVET--QVPLQQ-QQLLYNGREMNNAEKLSALGVKDED 65 (380)
Q Consensus 1 M~ItVk~~~g---~~~~i~V~~---------~~TV~~LK~~I~~~~--gip~~~-q~Li~~Gk~L~D~~tL~~~gI~dg~ 65 (380)
|+|+||+.++ +.+.++|++ ++||.+||++|+.++ |+|+++ |+|+|+|+.|+|+++|++|||++|+
T Consensus 13 ~~i~Vk~~~~~~~~~~~l~v~~~~~~~v~~~~~TV~~LK~~i~~~~~~gip~~~~qrLi~~Gk~L~D~~tL~~y~i~~g~ 92 (107)
T 1x1m_A 13 WHLAVKLADQPLAPKSILQLPETELGEYSLGGYSISFLKQLIAGKLQESVPDPELIDLIYCGRKLKDDQTLDFYGIQPGS 92 (107)
T ss_dssp CCEEEEETTCTTSCCEEECCCCCSSCSSCCCCCBHHHHHHHHHHHCTTTCCCSSSEEEEETTEECCTTCBHHHHTCCTTC
T ss_pred eEEEEEeCCCCCccEEEEEecCccccccCcccCCHHHHHHHHHHHhccCCChhhcEEEEECCeECCCCCcHHHcCCCCCC
Confidence 7899999888 789999554 599999999999999 999999 9999999999999999999999999
Q ss_pred EEEEeecCCC
Q 016931 66 LVMMVSNAAS 75 (380)
Q Consensus 66 ~I~l~~~~~~ 75 (380)
+|||+.+..+
T Consensus 93 ~i~lv~~~~~ 102 (107)
T 1x1m_A 93 TVHVLRKSWS 102 (107)
T ss_dssp EEEEEESSCC
T ss_pred EEEEEeCCCC
Confidence 9999977544
No 49
>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.58 E-value=5.9e-15 Score=118.32 Aligned_cols=72 Identities=17% Similarity=0.269 Sum_probs=67.5
Q ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCCCcCeEEecCCeecCCc-ccchhcCCCCCcEEEEeecCCC
Q 016931 1 MRITVMTADEQIISLDVDPHETVENVKALLEVETQVPLQQQQLLYNGREMNNA-EKLSALGVKDEDLVMMVSNAAS 75 (380)
Q Consensus 1 M~ItVk~~~g~~~~i~V~~~~TV~~LK~~I~~~~gip~~~q~Li~~Gk~L~D~-~tL~~~gI~dg~~I~l~~~~~~ 75 (380)
|+|+|++.+|+.+.++|++++||.+||++|+.++ +++|+|+|+|+.|+|+ ++|++|||++|++|||+...+.
T Consensus 8 m~i~Vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~---~~~qrLi~~Gk~L~D~~~tL~~y~i~~g~~i~l~~~~~~ 80 (95)
T 1wia_A 8 INVRLKFLNDTEELAVARPEDTVGTLKSKYFPGQ---ESQMKLIYQGRLLQDPARTLSSLNITNNCVIHCHRSPPG 80 (95)
T ss_dssp EEEEEEETTTEEEEEEECSSSBHHHHHHHHSSST---TTTCEEEETTEECCCSSCBTTTTTCCTTEEEEEECCCCC
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHhhC---cCcEEEEECCEEccCCcCCHHHcCCCCCCEEEEEECCCC
Confidence 7899999999999999999999999999999998 8999999999999999 9999999999999999976443
No 50
>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.57 E-value=4.5e-15 Score=122.48 Aligned_cols=72 Identities=21% Similarity=0.285 Sum_probs=66.2
Q ss_pred EEEEE-eCCCCEEEEEeCCCCCHHHHHHHHHHHhCCCCcCeEEecCCeecCCcccchhcCCCCCcEEEEeecC
Q 016931 2 RITVM-TADEQIISLDVDPHETVENVKALLEVETQVPLQQQQLLYNGREMNNAEKLSALGVKDEDLVMMVSNA 73 (380)
Q Consensus 2 ~ItVk-~~~g~~~~i~V~~~~TV~~LK~~I~~~~gip~~~q~Li~~Gk~L~D~~tL~~~gI~dg~~I~l~~~~ 73 (380)
.|+|+ ...++.++++++++.||.+||+.++.++++|+++|+|+|+||+|+|+.||++|||++|.+|||+.+.
T Consensus 17 tvkv~l~~~~~k~tv~v~~d~TV~dLKe~ls~~~~iP~e~qrLIy~GKiLKD~eTL~~~gIk~g~TIhLvi~s 89 (118)
T 2daf_A 17 TVKVVLIPVGQEIVIPFKVDTILKYLKDHFSHLLGIPHSVLQIRYSGKILKNNETLVQHGVKPQEIVQVEIFS 89 (118)
T ss_dssp EEEEEETTTCCEEEEEECSSSCSHHHHHHHHHHHTCCTTTEEEEETTEEECSSCCHHHHSCCSSCEEEEEEEE
T ss_pred EEEEEEcCCCcEEEEEeCCCCcHHHHHHHHHhhhCCChHHEEEEECCeEcCCcchHHHcCCCCCCEEEEEEec
Confidence 34555 5568899999999999999999999999999999999999999999999999999999999999763
No 51
>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.57 E-value=1.5e-15 Score=123.61 Aligned_cols=71 Identities=20% Similarity=0.452 Sum_probs=67.2
Q ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCCCcCeEEecCCeecCCcccchhcCCCCCcEEEEeec
Q 016931 1 MRITVMTADEQIISLDVDPHETVENVKALLEVETQVPLQQQQLLYNGREMNNAEKLSALGVKDEDLVMMVSN 72 (380)
Q Consensus 1 M~ItVk~~~g~~~~i~V~~~~TV~~LK~~I~~~~gip~~~q~Li~~Gk~L~D~~tL~~~gI~dg~~I~l~~~ 72 (380)
|+|+|++ +|+.+.++|++++||.+||++|+.++|+|+++|+|+|+|+.|+|+.+|++|||++|++|+|+.+
T Consensus 29 i~I~Vk~-~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~gI~~g~tI~lv~~ 99 (101)
T 3m63_B 29 LNIHIKS-GQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVESYHIQDGHSVHLVKS 99 (101)
T ss_dssp CCEEEEC-SSCCCCBCCCTTSBHHHHHHHHHHHHSCCSTTCCEEETTEECCTTSBTTTTTCCTTEEEEECCC
T ss_pred EEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHHHHCcChHHEEEEECCEECCCcCcHHHCCCCCCCEEEEEeC
Confidence 4678887 8888999999999999999999999999999999999999999999999999999999999865
No 52
>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B
Probab=99.57 E-value=9e-15 Score=129.76 Aligned_cols=72 Identities=28% Similarity=0.540 Sum_probs=70.2
Q ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCCCcCeEEecCCeecCCcccchhcCCCCCcEEEEeec
Q 016931 1 MRITVMTADEQIISLDVDPHETVENVKALLEVETQVPLQQQQLLYNGREMNNAEKLSALGVKDEDLVMMVSN 72 (380)
Q Consensus 1 M~ItVk~~~g~~~~i~V~~~~TV~~LK~~I~~~~gip~~~q~Li~~Gk~L~D~~tL~~~gI~dg~~I~l~~~ 72 (380)
|+|+|++.+|+.+.++|++++||.+||++|+.++|+|+++|+|+|+|+.|+|+++|++|||++|++|||+.+
T Consensus 1 MqI~Vk~~~Gk~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~y~I~~gstI~Lvlr 72 (169)
T 3l0w_B 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 72 (169)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCTTTEEEEETTEECCTTSBGGGGTCCTTCEEEEEEC
T ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHHCcCHHHEEEEECCccccCcCcHHHcCCCCCCEEEEEEE
Confidence 899999999999999999999999999999999999999999999999999999999999999999999854
No 53
>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens}
Probab=99.57 E-value=3.2e-15 Score=121.17 Aligned_cols=70 Identities=19% Similarity=0.292 Sum_probs=64.3
Q ss_pred CEEEEEeCCCC--EEEEEeCCCCCHHHHHHHHHHHh-CCC-CcCeEEecCCeecCCcccchhc--CCCCCcEEEEe
Q 016931 1 MRITVMTADEQ--IISLDVDPHETVENVKALLEVET-QVP-LQQQQLLYNGREMNNAEKLSAL--GVKDEDLVMMV 70 (380)
Q Consensus 1 M~ItVk~~~g~--~~~i~V~~~~TV~~LK~~I~~~~-gip-~~~q~Li~~Gk~L~D~~tL~~~--gI~dg~~I~l~ 70 (380)
|+|+||+++|+ .+.++|++++||.+||++|+.++ |+| +++|+|+|+||+|+|+++|++| +|++|++|||+
T Consensus 24 m~I~VK~~~g~~~~i~l~v~~~~TV~~LK~~I~~~~~g~pp~~~QrLIy~Gk~L~D~~tL~~y~~~I~~~~tihLv 99 (99)
T 2kdb_A 24 VTLIIKAPNQKYSDQTISCFLNWTVGKLKTHLSNVYPSKPLTKDQRLVYSGRLLPDHLQLKDILRKQDEYHMVHLV 99 (99)
T ss_dssp EEEEEECTTSSSCCEEEEECTTSBHHHHHHHHHHHSTTCCCTTTCCEEETTEEECTTSBTHHHHTTTCSEEEEEEC
T ss_pred EEEEEEcCCCCEEEEEEEcCCCCHHHHHHHHHHHHhcCCCChhhEEEEECCEECCCCCCHHHHhcCCCCCCEEEeC
Confidence 68999999887 57899999999999999999974 665 5999999999999999999999 99999999985
No 54
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.57 E-value=8.1e-15 Score=123.76 Aligned_cols=72 Identities=19% Similarity=0.325 Sum_probs=68.6
Q ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCCCcCeEEecCCeecCCcccchhcCCCCCcEEEEeecC
Q 016931 1 MRITVMTADEQIISLDVDPHETVENVKALLEVETQVPLQQQQLLYNGREMNNAEKLSALGVKDEDLVMMVSNA 73 (380)
Q Consensus 1 M~ItVk~~~g~~~~i~V~~~~TV~~LK~~I~~~~gip~~~q~Li~~Gk~L~D~~tL~~~gI~dg~~I~l~~~~ 73 (380)
|+|+|++. |+.+.++|++++||.+||.+|+.++|+|+++|+|+|+|+.|+|+++|++|||++|++|+|+.+.
T Consensus 33 m~I~Vk~~-g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~dygI~~gstI~lv~~~ 104 (125)
T 1j8c_A 33 IKVTVKTP-KEKEEFAVPENSSVQQFKEAISKRFKSQTDQLVLIFAGKILKDQDTLIQHGIHDGLTVHLVIKR 104 (125)
T ss_dssp EEEEEECS-SCEEEEEECTTCCHHHHHHHHHHHHCSCSSSEEEEETTEEESTTSCGGGTTCSSSEEEEEEEC-
T ss_pred EEEEEEeC-CeEEEEEECCCCcHHHHHHHHHHHHCcCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEEecc
Confidence 78999998 8999999999999999999999999999999999999999999999999999999999999653
No 55
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=99.56 E-value=1e-14 Score=143.97 Aligned_cols=71 Identities=25% Similarity=0.527 Sum_probs=67.1
Q ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHH---HhCCCCcCeEEecCCeecCCcccchhcCCCCCcEE-EEee
Q 016931 1 MRITVMTADEQIISLDVDPHETVENVKALLEV---ETQVPLQQQQLLYNGREMNNAEKLSALGVKDEDLV-MMVS 71 (380)
Q Consensus 1 M~ItVk~~~g~~~~i~V~~~~TV~~LK~~I~~---~~gip~~~q~Li~~Gk~L~D~~tL~~~gI~dg~~I-~l~~ 71 (380)
|+|+||+.+|+.+.|+|++++||.+||++|+. ++|+|+++|+|+|+||+|+|+++|++|||++|++| ||+.
T Consensus 8 M~I~VKtl~Gk~~~leV~~~~TV~~LK~~I~~~~~~~gip~~~QrLiy~GK~L~D~~tL~dygI~~gstIv~lv~ 82 (368)
T 1oqy_A 8 VTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVT 82 (368)
T ss_dssp CCEEEEETTTEEEEECCCTTCBHHHHHHHHHHHTCSSSCCSTEEEEESSSSEECSSSBTTTTCCCTTSCEEEEEE
T ss_pred EEEEEEeCCCCEEEEEeCCCChHHHHHHHHHHHhCcCCCChhheEEEECCeecCCcCCHHHcCCCCCCEEEEEEe
Confidence 89999999999999999999999999999999 57799999999999999999999999999999998 6653
No 56
>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.56 E-value=4.8e-15 Score=119.45 Aligned_cols=72 Identities=19% Similarity=0.263 Sum_probs=67.4
Q ss_pred CEEEEEeCCCCEE-EEEeCCCCCHHHHHHHHHHHhCCCCcCeEEecCCeecCCcccchhcCCCCCcEEEEeecCC
Q 016931 1 MRITVMTADEQII-SLDVDPHETVENVKALLEVETQVPLQQQQLLYNGREMNNAEKLSALGVKDEDLVMMVSNAA 74 (380)
Q Consensus 1 M~ItVk~~~g~~~-~i~V~~~~TV~~LK~~I~~~~gip~~~q~Li~~Gk~L~D~~tL~~~gI~dg~~I~l~~~~~ 74 (380)
|+|+|++ .|+.+ .++|++++||.+||++|+.++|+|+++|+|+|+|+.|+|+ +|++|||++|++|||+..+.
T Consensus 8 m~i~Vk~-~g~~~~~l~v~~~~TV~~lK~~I~~~tgip~~~QkLi~~Gk~L~D~-tL~~~~I~~g~~i~l~~~~~ 80 (96)
T 1wgg_A 8 YSVTVKW-GKEKFEGVELNTDEPPMVFKAQLFALTGVQPARQKVMVKGGTLKDD-DWGNIKMKNGMTVLMMGSAD 80 (96)
T ss_dssp EEEEEEE-TTEEEEEEEEESSSCHHHHHHHHHHHTCCCTTTSCCEETTEECCSS-CCCSCCCCSSCEEECCCCCC
T ss_pred EEEEEEE-CCEEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCcCCCCC-CHHHCCCCCCCEEEEEecch
Confidence 6899997 68889 6999999999999999999999999999999999999999 99999999999999997644
No 57
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.56 E-value=6.4e-15 Score=118.41 Aligned_cols=72 Identities=17% Similarity=0.272 Sum_probs=66.0
Q ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCCCcCeEEecCCeecCCcccchhcCCCCCcEEEEeecCC
Q 016931 1 MRITVMTADEQIISLDVDPHETVENVKALLEVETQVPLQQQQLLYNGREMNNAEKLSALGVKDEDLVMMVSNAA 74 (380)
Q Consensus 1 M~ItVk~~~g~~~~i~V~~~~TV~~LK~~I~~~~gip~~~q~Li~~Gk~L~D~~tL~~~gI~dg~~I~l~~~~~ 74 (380)
|+|+|+. .++.+.++|++++||.+||++|+.++|+|+++|+|+|+|+.| |+.+|++|||++|++|||+..+.
T Consensus 18 ~~i~Vk~-~g~~~~i~v~~~~TV~~LK~~I~~~tgip~~~QrL~~~Gk~L-dd~tL~~~~i~~g~~i~lv~~~~ 89 (95)
T 1v86_A 18 VDLKIIW-NKTKHDVKVPLDSTGSELKQKIHSITGLPPAMQKVMYKGLVP-EDKTLREIKVTSGAKIMVVGSTI 89 (95)
T ss_dssp EEEEEEE-TTEEEEEEECTTSBHHHHHHHHHHHHCSCSTTCCCBSSSBCC-SSSBHHHHCCCTTEEEEECCSSC
T ss_pred EEEEEEE-CCEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCeeC-CcCcHHHCCCCCCCEEEEEeccc
Confidence 5788885 688999999999999999999999999999999999999999 55699999999999999997643
No 58
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}
Probab=99.56 E-value=1.3e-14 Score=119.96 Aligned_cols=72 Identities=32% Similarity=0.583 Sum_probs=69.6
Q ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCCCcCeEEecCCeecCCcccchhcCCCCCcEEEEeec
Q 016931 1 MRITVMTADEQIISLDVDPHETVENVKALLEVETQVPLQQQQLLYNGREMNNAEKLSALGVKDEDLVMMVSN 72 (380)
Q Consensus 1 M~ItVk~~~g~~~~i~V~~~~TV~~LK~~I~~~~gip~~~q~Li~~Gk~L~D~~tL~~~gI~dg~~I~l~~~ 72 (380)
|+|+|++.+|+.+.++|+++.||.+||++|+.++|+|+++|+|+|+|+.|+|+++|++|||++|++|||+.+
T Consensus 36 m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~gI~~gs~I~l~~r 107 (111)
T 2ojr_A 36 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 107 (111)
T ss_dssp EEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHCCCTTTEEEEETTEECCSSCBTTTTTCCTTCEEEEEEC
T ss_pred EEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHHHHCcCcccEEEEECCEECCCCCcHHHcCCCCCCEEEEEEe
Confidence 789999999999999999999999999999999999999999999999999999999999999999999864
No 59
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}
Probab=99.55 E-value=1.4e-14 Score=114.03 Aligned_cols=70 Identities=23% Similarity=0.349 Sum_probs=65.2
Q ss_pred EEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCCCcCeEEecCCeecCCcccchhcCCCCCcEEEEeecC
Q 016931 4 TVMTADEQIISLDVDPHETVENVKALLEVETQVPLQQQQLLYNGREMNNAEKLSALGVKDEDLVMMVSNA 73 (380)
Q Consensus 4 tVk~~~g~~~~i~V~~~~TV~~LK~~I~~~~gip~~~q~Li~~Gk~L~D~~tL~~~gI~dg~~I~l~~~~ 73 (380)
.+++.+|+.+.++|++++||.+||++|+.++|+|+++|+|+|+|+.|+|+++|++|||++|++|+|+..+
T Consensus 15 ~~~~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~l~l~~s~ 84 (85)
T 2kd0_A 15 LTVKFGGKSIPLSVSPDCTVKDLKSQLQPITNVLPRGQKLIFKGKVLVETSTLKQSDVGSGAKLMLMASQ 84 (85)
T ss_dssp EEEEETTEEEEEEECTTSBHHHHHHHHHHHHCCCTTTCEEEETTEECCTTCBTTTTTCCTTEEEEEECCC
T ss_pred EEEEECCEEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCeECCCcCCHHHCCCCCCCEEEEEEeC
Confidence 4555689999999999999999999999999999999999999999999999999999999999998653
No 60
>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.55 E-value=1.6e-14 Score=120.16 Aligned_cols=75 Identities=13% Similarity=0.256 Sum_probs=67.2
Q ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHH------HhCC--CCcCeEEecCCeecCCcccchhcCCCCC--cEEEEe
Q 016931 1 MRITVMTADEQIISLDVDPHETVENVKALLEV------ETQV--PLQQQQLLYNGREMNNAEKLSALGVKDE--DLVMMV 70 (380)
Q Consensus 1 M~ItVk~~~g~~~~i~V~~~~TV~~LK~~I~~------~~gi--p~~~q~Li~~Gk~L~D~~tL~~~gI~dg--~~I~l~ 70 (380)
|+|+|++..|++++++|++++||.+||++|+. +.++ |+++|+|+|.||+|+|+.||++|+|+.+ .+|||+
T Consensus 17 m~I~vKtl~G~t~~lev~~s~TV~~lK~kI~~~~p~dwke~~p~p~~qqrLIy~GK~LeD~~TL~~y~I~~~~~~tlhLv 96 (116)
T 1wgh_A 17 INLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGALKLPFGKTTVMHLV 96 (116)
T ss_dssp EEEEEECSSSCEEEEEECTTCBHHHHHHHHHHSSSCCSSCCCCCCTTTEEEEETTEEECSSCBTTTTTCCSSCEEEEEEE
T ss_pred EEEEEEeCCCCEEEEEECCcCHHHHHHHHHHHhcccccccCCCCChHHEEEEECCcCCCCCCcHHHcCCCCCCceEEEEE
Confidence 78999999999999999999999999999999 5575 6999999999999999999999999877 578888
Q ss_pred ecCCC
Q 016931 71 SNAAS 75 (380)
Q Consensus 71 ~~~~~ 75 (380)
.+...
T Consensus 97 lr~~~ 101 (116)
T 1wgh_A 97 ARETL 101 (116)
T ss_dssp ECSSC
T ss_pred ccCCC
Confidence 65433
No 61
>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A
Probab=99.55 E-value=6.7e-15 Score=122.41 Aligned_cols=72 Identities=19% Similarity=0.259 Sum_probs=67.0
Q ss_pred CEEEEEeCCCC-EEEEEeCCCCCHHHHHHHHHHHhCCCCcCeEEecCCeecCCcccchhcCCC-------CCcEEEEeec
Q 016931 1 MRITVMTADEQ-IISLDVDPHETVENVKALLEVETQVPLQQQQLLYNGREMNNAEKLSALGVK-------DEDLVMMVSN 72 (380)
Q Consensus 1 M~ItVk~~~g~-~~~i~V~~~~TV~~LK~~I~~~~gip~~~q~Li~~Gk~L~D~~tL~~~gI~-------dg~~I~l~~~ 72 (380)
|+++|+...++ ++.++|++++||.+||++|+.+.|+|+++|+|+|+||+|+|++||++|||+ ++++|||+-+
T Consensus 1 M~mfl~ir~~ktti~lev~~sdTV~~lK~kI~~~egIP~~qQrLi~~Gk~LeD~~TLsdy~I~~~~a~~q~~stL~L~lr 80 (118)
T 2fnj_B 1 MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPEEQRLYKDDQLLDDGKTLGECGFTSQTARPQAPATVGLAFR 80 (118)
T ss_dssp CEEEEEEEEBTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBHHHHTCCTTTSBTTBCEEEEEEEB
T ss_pred CcEEEEEecCCEEEEEEeCCcChHHHHHHHHHHHhCCCHHHeEEEECCeECCCCCCHHHcCcccccccCCCCCEEEEEec
Confidence 77888877776 589999999999999999999999999999999999999999999999999 7999999865
No 62
>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A
Probab=99.55 E-value=1.4e-14 Score=118.17 Aligned_cols=72 Identities=25% Similarity=0.296 Sum_probs=67.1
Q ss_pred CEEEEEeCCC--CEEEEEeCCCCCHHHHHHHHHHHhCCCCcCeEEecCCeecCCcccchhcCC-CCCcEEEEeec
Q 016931 1 MRITVMTADE--QIISLDVDPHETVENVKALLEVETQVPLQQQQLLYNGREMNNAEKLSALGV-KDEDLVMMVSN 72 (380)
Q Consensus 1 M~ItVk~~~g--~~~~i~V~~~~TV~~LK~~I~~~~gip~~~q~Li~~Gk~L~D~~tL~~~gI-~dg~~I~l~~~ 72 (380)
|+|+|++..+ ..++++|++++||.+||++|+.++|+|+++|||+|+|+.++|++||++||| ++|+++||+.-
T Consensus 25 l~v~v~d~~s~~~~i~l~V~ps~TV~~LK~~I~~k~Gipp~~QRli~ggkll~D~~TL~~ygI~~~G~t~hL~l~ 99 (105)
T 4dbg_A 25 LWVSVEDAQMHTVTIWLTVRPDMTVASLKDMVFLDYGFPPVLQQWVIGQRLARDQETLHSHGVRQNGDSAYLYLL 99 (105)
T ss_dssp EEEEEEESSSCCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEEECTTCBTGGGTCCSTTCEEEEEEC
T ss_pred EEEEEEccCCCCceEEEEECCcChHHHHHHHHHHHhCCCHHHEEEeccCeEccCcCcHHHcCCCCCCCEEEEEEE
Confidence 6899998764 689999999999999999999999999999999999999999999999999 59999999864
No 63
>4ajy_B Transcription elongation factor B polypeptide 2; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A 3ztc_A* 3ztd_A* 3zun_A* 1lm8_B 4b95_A* 2fnj_B 4b9k_A* 4awj_A*
Probab=99.54 E-value=9.7e-15 Score=121.08 Aligned_cols=72 Identities=19% Similarity=0.259 Sum_probs=67.8
Q ss_pred CEEEEEeCCCC-EEEEEeCCCCCHHHHHHHHHHHhCCCCcCeEEecCCeecCCcccchhcCCCC-------CcEEEEeec
Q 016931 1 MRITVMTADEQ-IISLDVDPHETVENVKALLEVETQVPLQQQQLLYNGREMNNAEKLSALGVKD-------EDLVMMVSN 72 (380)
Q Consensus 1 M~ItVk~~~g~-~~~i~V~~~~TV~~LK~~I~~~~gip~~~q~Li~~Gk~L~D~~tL~~~gI~d-------g~~I~l~~~ 72 (380)
|.++++...++ ++.+++.+++||.+||++|+.+.|+|+++|+|+|+|++|+|++||++|||++ +++|||+-+
T Consensus 1 m~vFl~Ikr~ktTI~ldve~sdTV~~lK~kI~~~~giPp~qQrLI~~Gk~LeD~kTL~dy~I~~~ta~~q~~atl~Lvlr 80 (118)
T 4ajy_B 1 MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPDEQRLYKDDQLLDDGKTLGECGFTSQTARPQAPATVGLAFR 80 (118)
T ss_dssp CEEEEEEEEBTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTTTTTCCGGGSBTTBCEEEEEEEC
T ss_pred CceEEEEecCCEEEEEEcCCCChHHHHHHHHHHHHCCCHHHeEEEeCCeECCCcCCHHHcCCCcCcccCCCCCEEEEEEe
Confidence 78888887776 6889999999999999999999999999999999999999999999999999 999999854
No 64
>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}
Probab=99.53 E-value=2.7e-14 Score=118.60 Aligned_cols=72 Identities=25% Similarity=0.504 Sum_probs=69.4
Q ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCCCcCeEEecCCeecCCcccchhcCCCCCcEEEEeec
Q 016931 1 MRITVMTADEQIISLDVDPHETVENVKALLEVETQVPLQQQQLLYNGREMNNAEKLSALGVKDEDLVMMVSN 72 (380)
Q Consensus 1 M~ItVk~~~g~~~~i~V~~~~TV~~LK~~I~~~~gip~~~q~Li~~Gk~L~D~~tL~~~gI~dg~~I~l~~~ 72 (380)
.+|+|++.+|+.+.++|++++||.+||++|+.++|+|+++|+|+|+|+.|+|+++|++|||++|++|+|+.+
T Consensus 10 ~~i~vk~l~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~~ 81 (114)
T 2kdi_A 10 FQIFAKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIWAGKQLEDGRTLSDYNIQRESTLHLVLR 81 (114)
T ss_dssp CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTTTTTCCSSCEEEEEEC
T ss_pred EEEEEEeCCCcEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEE
Confidence 379999999999999999999999999999999999999999999999999999999999999999999865
No 65
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=99.53 E-value=1.9e-14 Score=125.77 Aligned_cols=72 Identities=19% Similarity=0.216 Sum_probs=69.7
Q ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCCCcCeEEecCCeecCCcccchhcCCCCCcEEEEeec
Q 016931 1 MRITVMTADEQIISLDVDPHETVENVKALLEVETQVPLQQQQLLYNGREMNNAEKLSALGVKDEDLVMMVSN 72 (380)
Q Consensus 1 M~ItVk~~~g~~~~i~V~~~~TV~~LK~~I~~~~gip~~~q~Li~~Gk~L~D~~tL~~~gI~dg~~I~l~~~ 72 (380)
|+|+|++.+|+.+.++|++++||.+||++|+.++|+|+++|+|+|+|+.|+|+.+|++|||++|++|||+.+
T Consensus 82 m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~y~i~~g~~l~l~~r 153 (159)
T 3rt3_B 82 LSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLR 153 (159)
T ss_dssp EEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEEC
T ss_pred EEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCHHHEEEEECCeecCCCCCHHHcCCCCCCEEEEEEe
Confidence 789999999999999999999999999999999999999999999999999999999999999999999854
No 66
>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.53 E-value=1.4e-14 Score=119.71 Aligned_cols=72 Identities=21% Similarity=0.302 Sum_probs=68.6
Q ss_pred CEEEEEeC---CCCEEEEEeCC-CCCHHHHHHHHHHHhCCCCcCeEEecCCeecCCcccchhcCCCCCcEEEEeec
Q 016931 1 MRITVMTA---DEQIISLDVDP-HETVENVKALLEVETQVPLQQQQLLYNGREMNNAEKLSALGVKDEDLVMMVSN 72 (380)
Q Consensus 1 M~ItVk~~---~g~~~~i~V~~-~~TV~~LK~~I~~~~gip~~~q~Li~~Gk~L~D~~tL~~~gI~dg~~I~l~~~ 72 (380)
|+|+|+++ +|+.+.++|++ ++||.+||++|+..+|+|+++|+|+|+|+.|+|+.+|++|||++|++|||+.+
T Consensus 28 i~i~Vk~~~~~~g~~~~l~v~~l~~TV~~LK~~I~~~~gip~~~QrL~~~Gk~L~D~~tL~~y~I~~g~~l~l~~r 103 (111)
T 1we6_A 28 ATIRVSKPNENDGQFMEITVQSLSENVGSLKEKIAGEIQIPANKQKLSGKAGFLKDNMSLAHYNVGAGEILTLSLR 103 (111)
T ss_dssp EEEEECCTTCSSSCCEEEEESCSSSBHHHHHHHHHHHTTCCTTTSEEECSSSBCCTTSBTTTTTCSSSCEEEEECS
T ss_pred EEEEEEecccCCCcEEEEEecCCCCcHHHHHHHHHHHHCCCHHHeEEEECCEECCCCCcHHHCCCCCCCEEEEEEE
Confidence 68999998 78999999998 99999999999999999999999999999999999999999999999999854
No 67
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=99.53 E-value=3.2e-14 Score=124.34 Aligned_cols=72 Identities=19% Similarity=0.256 Sum_probs=70.0
Q ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCCCcCeEEe-c-CCeecCCcccchhcCCCCCcEEEEeec
Q 016931 1 MRITVMTADEQIISLDVDPHETVENVKALLEVETQVPLQQQQLL-Y-NGREMNNAEKLSALGVKDEDLVMMVSN 72 (380)
Q Consensus 1 M~ItVk~~~g~~~~i~V~~~~TV~~LK~~I~~~~gip~~~q~Li-~-~Gk~L~D~~tL~~~gI~dg~~I~l~~~ 72 (380)
|+|+|++.+|+.+.++|++++||.+||++|+.++|+|+++|+|+ | +|+.|+|+.+|++|||++|++||++.+
T Consensus 3 m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~~~g~~L~d~~tL~~y~i~~~~~l~l~~~ 76 (159)
T 3rt3_B 3 WDLTVKMLAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDRVPLASQGLGPGSTVLLVVD 76 (159)
T ss_dssp CEEEEEETTSCEEEEECCTTCCHHHHHHHHHHHHCCCGGGEEEEEETTCCBCCTTSCGGGGTCCTTCEEEEEEC
T ss_pred eEEEEEECCCCEEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEEcCCCCCCCCCCCHHHcCCCCCCEEEEEcc
Confidence 79999999999999999999999999999999999999999999 9 799999999999999999999999976
No 68
>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens}
Probab=99.52 E-value=2.4e-14 Score=120.66 Aligned_cols=74 Identities=14% Similarity=0.271 Sum_probs=67.2
Q ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHH------HhCC--CCcCeEEecCCeecCCcccchhcCCCCCc--EEEEe
Q 016931 1 MRITVMTADEQIISLDVDPHETVENVKALLEV------ETQV--PLQQQQLLYNGREMNNAEKLSALGVKDED--LVMMV 70 (380)
Q Consensus 1 M~ItVk~~~g~~~~i~V~~~~TV~~LK~~I~~------~~gi--p~~~q~Li~~Gk~L~D~~tL~~~gI~dg~--~I~l~ 70 (380)
|+|+|++.+|++++++|++++||.+||++|+. +.|+ ++++|+|+|.||+|+|++||++|+|++|+ +|||+
T Consensus 18 m~I~vktl~G~~~~lev~~s~TV~~lK~~I~~~~p~dwke~ip~~~~~qrLIy~GK~LeD~~TL~~y~I~~~~~~tlhlv 97 (125)
T 2gow_A 18 INLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGALKLPFGKTTVMHLV 97 (125)
T ss_dssp EEEEEECTTSCEEEEEECTTSBHHHHHHHHHSSCCCSCCCCTTCCGGGEEEESSSSEEESSCBTGGGCCCTTSEEEEEEE
T ss_pred EEEEEEeCCCCEEEEEeCCccHHHHHHHHHHHHCCcccccCCCCChHHEEEEECCcCCCCCCcHHHcCCCCCCceEEEEE
Confidence 68999999999999999999999999999999 6787 48999999999999999999999999887 67888
Q ss_pred ecCC
Q 016931 71 SNAA 74 (380)
Q Consensus 71 ~~~~ 74 (380)
.+..
T Consensus 98 ~r~~ 101 (125)
T 2gow_A 98 ARET 101 (125)
T ss_dssp ECSC
T ss_pred ecCC
Confidence 6543
No 69
>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens}
Probab=99.52 E-value=2.1e-14 Score=129.33 Aligned_cols=72 Identities=31% Similarity=0.547 Sum_probs=70.0
Q ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCCCcCeEEecCCeecCCcccchhcCCCCCcEEEEeec
Q 016931 1 MRITVMTADEQIISLDVDPHETVENVKALLEVETQVPLQQQQLLYNGREMNNAEKLSALGVKDEDLVMMVSN 72 (380)
Q Consensus 1 M~ItVk~~~g~~~~i~V~~~~TV~~LK~~I~~~~gip~~~q~Li~~Gk~L~D~~tL~~~gI~dg~~I~l~~~ 72 (380)
|+|+|++.+|+++.++|++++||.+||++|+.++|+|+++|+|+|+|+.|+|+.+|++|||++|++|||+.+
T Consensus 106 MqI~VKtl~Gkt~~l~V~~s~TV~~LK~kI~~~~gIp~~~QrLi~~Gk~L~D~~tL~dygI~~gstI~Lvlr 177 (189)
T 3q3f_A 106 GQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 177 (189)
T ss_dssp EEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTCBGGGGTCCTTCEEEECCC
T ss_pred eeeeeecCCCCEEEEEeCCCCcHHHHHHHHHhccCCCHHHEEEEECCEECCCCCCHHHCCCCCCCEEEEEEE
Confidence 899999999999999999999999999999999999999999999999999999999999999999999854
No 70
>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}
Probab=99.52 E-value=1.6e-14 Score=114.09 Aligned_cols=72 Identities=17% Similarity=0.223 Sum_probs=63.3
Q ss_pred EEEEE--eCCCCEEEEEeCCCCCHHHHHHHHHHHhCCCCcCeEEec-------CCeecCCcccchhcCCCCCcEEEEeec
Q 016931 2 RITVM--TADEQIISLDVDPHETVENVKALLEVETQVPLQQQQLLY-------NGREMNNAEKLSALGVKDEDLVMMVSN 72 (380)
Q Consensus 2 ~ItVk--~~~g~~~~i~V~~~~TV~~LK~~I~~~~gip~~~q~Li~-------~Gk~L~D~~tL~~~gI~dg~~I~l~~~ 72 (380)
+|.|. ..+.+.+++.+++++||++||++|+.++|+|+++|+|+| .|+.|+|+++|++|||++|++|||+..
T Consensus 4 ~v~iths~~~~~~~E~r~~~s~TI~~lK~ki~~~~Gip~~~QrLi~~~~~~~~~g~~l~d~~tL~~Y~i~~g~~ihlvd~ 83 (86)
T 4b6w_A 4 KVSLTHSASRMRVPEKRYGLAQTIESIKENVFTHFATPPEYMQLQLIDDRGITIEKNMANDKQLGYYQCRDEFVIHVVDL 83 (86)
T ss_dssp EEEEEETTCSCCEEEEEEETTSBHHHHHHHHHTTSCCCGGGEEEEEECTTSCEEESSCCTTSBGGGGTCCTTCEEEEEEC
T ss_pred EEEEEEcCCCCeEEEEEcCccCcHHHHHHHHHHHHCCCHHHEEEEEecCCCCceeeEcCCCCCHHHCCCCCCCEEEEEeC
Confidence 34444 345677899999999999999999999999999999997 478899999999999999999999976
Q ss_pred C
Q 016931 73 A 73 (380)
Q Consensus 73 ~ 73 (380)
.
T Consensus 84 ~ 84 (86)
T 4b6w_A 84 Q 84 (86)
T ss_dssp C
T ss_pred C
Confidence 3
No 71
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=99.51 E-value=5.9e-14 Score=121.03 Aligned_cols=73 Identities=32% Similarity=0.570 Sum_probs=70.6
Q ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCCCcCeEEecCCeecCCcccchhcCCCCCcEEEEeecC
Q 016931 1 MRITVMTADEQIISLDVDPHETVENVKALLEVETQVPLQQQQLLYNGREMNNAEKLSALGVKDEDLVMMVSNA 73 (380)
Q Consensus 1 M~ItVk~~~g~~~~i~V~~~~TV~~LK~~I~~~~gip~~~q~Li~~Gk~L~D~~tL~~~gI~dg~~I~l~~~~ 73 (380)
|+|+|++.+|+.+.++|++++||.+||++|+.++|+|+++|+|+|+|+.|+|+.+|++|||++|++||++.+.
T Consensus 1 M~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~tL~~~~i~~~~~l~l~~~~ 73 (152)
T 3b08_A 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL 73 (152)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECC
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHHCcChHHeEEEECCeECcCcccHHHhccCCCCeeEEEeec
Confidence 8999999999999999999999999999999999999999999999999999999999999999999998753
No 72
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=99.51 E-value=1.4e-15 Score=128.97 Aligned_cols=72 Identities=28% Similarity=0.540 Sum_probs=0.0
Q ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCCCcCeEEecCCeecCCcccchhcCCCCCcEEEEeec
Q 016931 1 MRITVMTADEQIISLDVDPHETVENVKALLEVETQVPLQQQQLLYNGREMNNAEKLSALGVKDEDLVMMVSN 72 (380)
Q Consensus 1 M~ItVk~~~g~~~~i~V~~~~TV~~LK~~I~~~~gip~~~q~Li~~Gk~L~D~~tL~~~gI~dg~~I~l~~~ 72 (380)
|+|+|++.+|+++.++|++++||.+||+.|+..+|+|+++|+|+|+|+.|+|+.||++|||++|++|||+.+
T Consensus 1 M~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~~I~~gsti~l~~r 72 (128)
T 3u5e_m 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 72 (128)
T ss_dssp ------------------------------------------------------------------------
T ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCcChHHEEEEECCEECCCCCchhhhccCCCCEEEEEEE
Confidence 899999999999999999999999999999999999999999999999999999999999999999999854
No 73
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=99.50 E-value=4.1e-14 Score=125.43 Aligned_cols=72 Identities=32% Similarity=0.583 Sum_probs=69.9
Q ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCCCcCeEEecCCeecCCcccchhcCCCCCcEEEEeec
Q 016931 1 MRITVMTADEQIISLDVDPHETVENVKALLEVETQVPLQQQQLLYNGREMNNAEKLSALGVKDEDLVMMVSN 72 (380)
Q Consensus 1 M~ItVk~~~g~~~~i~V~~~~TV~~LK~~I~~~~gip~~~q~Li~~Gk~L~D~~tL~~~gI~dg~~I~l~~~ 72 (380)
|+|+|++.+|+.+.++|++++||.+||++|+.++|+|+++|+|+|+|+.|+|+.+|++|||++|++|||+..
T Consensus 21 m~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~g~~L~d~~tL~~~~i~~~~~l~l~~~ 92 (172)
T 3u30_A 21 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 92 (172)
T ss_dssp EEEEEEETTTEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTGGGTCCTTCEEEEEEC
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCccccccCCHhHcCCcccceeeeeec
Confidence 799999999999999999999999999999999999999999999999999999999999999999999864
No 74
>1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.48 E-value=9.7e-14 Score=116.69 Aligned_cols=72 Identities=14% Similarity=0.201 Sum_probs=65.4
Q ss_pred CEEEEEeCCCCEE-EEEeCCCCCHHHHHHHH-----HHHhCCCC--cCeEEecCCeecCCcccchhcCCCCC------cE
Q 016931 1 MRITVMTADEQII-SLDVDPHETVENVKALL-----EVETQVPL--QQQQLLYNGREMNNAEKLSALGVKDE------DL 66 (380)
Q Consensus 1 M~ItVk~~~g~~~-~i~V~~~~TV~~LK~~I-----~~~~gip~--~~q~Li~~Gk~L~D~~tL~~~gI~dg------~~ 66 (380)
|+|+|++.+|+.+ .+++++++||.+||++| +.+.|+|+ ++|+|||.||+|+|++||++|+|++| .+
T Consensus 17 ~~i~~kt~~G~~i~~l~v~psdTV~~lK~kI~~~~p~dkegiP~~~~qQrLIy~GK~LeD~~TLsdy~I~~~~~~~~v~t 96 (126)
T 1se9_A 17 LEIKFRLTDGSDIGPKAFPDATTVSALKETVISEWPREKENGPKTVKEVKLISAGKVLENSKTVKDYRSPVSNLAGAVTT 96 (126)
T ss_dssp EEEEEEETTSCEEEEEEECTTCBHHHHHHHHHHHSCTTCSSSCCSGGGEEEEETTEECCTTSBGGGGSCCTTSCTTCCEE
T ss_pred EEEEEEECCCCEEEeeecCccCHHHHHHHHHHhhcccccccCCCChhhEEEEECCeECcCCCcHHHcCCCcCCccCCcEE
Confidence 6899999999887 79999999999999999 45668886 89999999999999999999999999 57
Q ss_pred EEEeec
Q 016931 67 VMMVSN 72 (380)
Q Consensus 67 I~l~~~ 72 (380)
+||+.+
T Consensus 97 mhlVlr 102 (126)
T 1se9_A 97 MHVIIQ 102 (126)
T ss_dssp EEEEEC
T ss_pred EEEEec
Confidence 888864
No 75
>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.47 E-value=1.1e-13 Score=113.71 Aligned_cols=74 Identities=24% Similarity=0.390 Sum_probs=67.3
Q ss_pred CEEEEEeCCCCEEEEEeC-CCCCHHHHHHHHHHHhCCCCcCeEEecCCe-----------e----cCCcccchhcCCCCC
Q 016931 1 MRITVMTADEQIISLDVD-PHETVENVKALLEVETQVPLQQQQLLYNGR-----------E----MNNAEKLSALGVKDE 64 (380)
Q Consensus 1 M~ItVk~~~g~~~~i~V~-~~~TV~~LK~~I~~~~gip~~~q~Li~~Gk-----------~----L~D~~tL~~~gI~dg 64 (380)
|+|+|++.+|+. .++|+ +++||.+||++|+.++|+|+++|+|+|.|+ . ++|+++|++|||++|
T Consensus 8 M~irvrs~~G~~-~v~v~~~~~Tv~~LK~kI~~~~gip~~~QrL~~~~~~~~~k~~~~~~~l~~~l~d~~tL~~~gi~~G 86 (107)
T 1wf9_A 8 TMLRVRSRDGLE-RVSVDGPHITVSQLKTLIQDQLQIPIHNQTLSTNRNLLLAKSPSDFLAFTDMADPNLRISSLNLAHG 86 (107)
T ss_dssp EEEEEECSSCEE-EEEECCTTSBHHHHHHHHHHHSCCCTTTCCCBSSGGGGTCCSHHHHTTCCSSCCTTCBGGGTCCCTT
T ss_pred EEEEEECCCCCE-EEEECCCCCcHHHHHHHHHHHhCcCcccCEEEECCccccccCccccccccccCCCCCCHHHCCCCCC
Confidence 789999998875 79999 999999999999999999999999999988 4 478899999999999
Q ss_pred cEEEEeecCCC
Q 016931 65 DLVMMVSNAAS 75 (380)
Q Consensus 65 ~~I~l~~~~~~ 75 (380)
++|||+.....
T Consensus 87 ~~L~l~~~~~~ 97 (107)
T 1wf9_A 87 SMVYLAYEGER 97 (107)
T ss_dssp CEEECCCSSCC
T ss_pred CEEEEEeCCCC
Confidence 99999976544
No 76
>2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.47 E-value=5.3e-14 Score=111.56 Aligned_cols=70 Identities=21% Similarity=0.353 Sum_probs=64.2
Q ss_pred CEEEEEeCCCCEE--EE-EeCCCCCHHHHHHHHHHH-hCCCCcCeEEecC--CeecCCcccchhcCCCCCcEEEEe
Q 016931 1 MRITVMTADEQII--SL-DVDPHETVENVKALLEVE-TQVPLQQQQLLYN--GREMNNAEKLSALGVKDEDLVMMV 70 (380)
Q Consensus 1 M~ItVk~~~g~~~--~i-~V~~~~TV~~LK~~I~~~-~gip~~~q~Li~~--Gk~L~D~~tL~~~gI~dg~~I~l~ 70 (380)
|+|+|+++.|+.+ .+ +|++++||.+||++|+.+ .|+|+++|+|+|. |++|+|++||++|||++|++||+.
T Consensus 11 M~I~Vk~~~g~~~~~~l~~v~~~~TV~~lK~~I~~~~~~i~~~~QrL~~~~~Gk~L~D~~tL~~y~i~~~stl~~K 86 (88)
T 2dzj_A 11 YEVEILDAKTREKLCFLDKVEPHATIAEIKNLFTKTHPQWYPARQSLRLDPKGKSLKDEDVLQKLPVGTTATLYFR 86 (88)
T ss_dssp EEEEEEESSSCCCCEEEEEECSSCBHHHHHHHHHHHCSSSCTTTCCEESSTTSCCCCTTCBTTTSSCCSEEEEEEC
T ss_pred EEEEEECCCCCEEeeEEeEcCCCCcHHHHHHHHHHHhcCCChHHeEEEecCCCcCcCCCCCHHHcCCCCCCEEEEE
Confidence 7999999987664 58 999999999999999995 8999999999976 999999999999999999999984
No 77
>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}
Probab=99.46 E-value=1.1e-13 Score=111.25 Aligned_cols=70 Identities=19% Similarity=0.171 Sum_probs=62.4
Q ss_pred EEEEEeCCC--CEEEEEeCCCCCHHHHHHHHHHHhCCCCcCeEEecC--Ce---ec-CCcccchhcCCCCCcEEEEee
Q 016931 2 RITVMTADE--QIISLDVDPHETVENVKALLEVETQVPLQQQQLLYN--GR---EM-NNAEKLSALGVKDEDLVMMVS 71 (380)
Q Consensus 2 ~ItVk~~~g--~~~~i~V~~~~TV~~LK~~I~~~~gip~~~q~Li~~--Gk---~L-~D~~tL~~~gI~dg~~I~l~~ 71 (380)
.|+|++..+ +.++++|++++||++||++|+.++|+|+++|+|+|. |+ .| +|+++|++|||++|++|||++
T Consensus 17 ~l~It~s~~~~~~~~~~v~~~~TV~~LK~kI~~~~GiP~~~QrL~~~~~g~~~~~L~~D~~tL~~Y~i~~gstihlvD 94 (95)
T 2kjr_A 17 KVNVSNSHNDAVAFEVKLAKDLTVAQLKTKLEILTGGCAGTMKVQVFKGDTCVSTMDNNDAQLGYYANSDGLRLHVVD 94 (95)
T ss_dssp EEEEEESSCSCEEEEEEEETTCBHHHHHHHHHHHHCSCTTTEEEEEEETTEEEEECCCTTSBHHHHCCSSSCEEEEEE
T ss_pred EEEEEECCCCceEEEEEeCccCHHHHHHHHHHHHHCcCHHHeEEEEecCCcccceeCCCCCCHhHCCcCCCCEEEEEC
Confidence 577887665 478999999999999999999999999999999997 55 34 788999999999999999985
No 78
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=99.46 E-value=5.5e-15 Score=128.78 Aligned_cols=71 Identities=28% Similarity=0.546 Sum_probs=0.0
Q ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCCCcCeEEecCCeecCCcccchhcCCCCCcEEEEee
Q 016931 1 MRITVMTADEQIISLDVDPHETVENVKALLEVETQVPLQQQQLLYNGREMNNAEKLSALGVKDEDLVMMVS 71 (380)
Q Consensus 1 M~ItVk~~~g~~~~i~V~~~~TV~~LK~~I~~~~gip~~~q~Li~~Gk~L~D~~tL~~~gI~dg~~I~l~~ 71 (380)
|+|+|++.+|+.+.++|++++||.+||++|+..+|+|+++|+|+|+|+.|+|+.+|++|||++|++|||+.
T Consensus 1 MqI~VK~l~G~~~~l~V~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~dygI~~gstL~Lvl 71 (152)
T 3u5c_f 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVL 71 (152)
T ss_dssp -----------------------------------------------------------------------
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEEccccCcHHHcCCCCCCEEEEEe
Confidence 89999999999999999999999999999999999999999999999999999999999999999999984
No 79
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=99.45 E-value=2.8e-13 Score=116.75 Aligned_cols=72 Identities=32% Similarity=0.583 Sum_probs=69.4
Q ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCCCcCeEEecCCeecCCcccchhcCCCCCcEEEEeec
Q 016931 1 MRITVMTADEQIISLDVDPHETVENVKALLEVETQVPLQQQQLLYNGREMNNAEKLSALGVKDEDLVMMVSN 72 (380)
Q Consensus 1 M~ItVk~~~g~~~~i~V~~~~TV~~LK~~I~~~~gip~~~q~Li~~Gk~L~D~~tL~~~gI~dg~~I~l~~~ 72 (380)
|+|+|++.+|+.+.++++++.||.+||++|+.++|+|+++|+|+|+|+.|+|+++|++|||++|++||++.+
T Consensus 77 ~~i~Vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~qrL~~~g~~L~d~~tL~~~~i~~~~~i~l~~r 148 (152)
T 3b08_A 77 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 148 (152)
T ss_dssp EEEEEEESSSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEEC
T ss_pred cceeeeecCCCEEEEEeCCCCcHHHHHHHHHHHhCcChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEe
Confidence 689999999999999999999999999999999999999999999999999999999999999999999865
No 80
>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=99.45 E-value=2e-13 Score=110.07 Aligned_cols=71 Identities=14% Similarity=0.122 Sum_probs=62.5
Q ss_pred EEEEEeCCC--CEEEEEeCCCCCHHHHHHHHHHHhCCCCcCeEEecCC---ee----cCCcccchhcCCCCCcEEEEeec
Q 016931 2 RITVMTADE--QIISLDVDPHETVENVKALLEVETQVPLQQQQLLYNG---RE----MNNAEKLSALGVKDEDLVMMVSN 72 (380)
Q Consensus 2 ~ItVk~~~g--~~~~i~V~~~~TV~~LK~~I~~~~gip~~~q~Li~~G---k~----L~D~~tL~~~gI~dg~~I~l~~~ 72 (380)
.|+|++... +.++++|++++||++||++|+.++|+|+++|+|+|.| +. ++|+++|++|||++|++|||+..
T Consensus 16 ~l~It~s~~~~~~~e~~v~~~~TV~~LK~kIe~~~Gip~~~QrLi~~g~~g~~~~~L~~D~~tL~~Y~I~~g~~Ihlvd~ 95 (97)
T 2kj6_A 16 HLHITHANLKSFSADARFSPQMSVEAVKEKLWKKCGTSVNSMALELYDDSGSKVAVLSDDSRPLGFFSPFDGFRLHIIDL 95 (97)
T ss_dssp EEEEEETTSSCCCEEEEECTTCCHHHHHHHHHHHHCCCTTSEEEEEECSSSCBCCCSSGGGSCHHHHCCCSCCEEEEEEC
T ss_pred EEEEEECCCCceEEEEEeCCCChHHHHHHHHHHHHCcCHHHeEEEEecCCCcccceecCCcCCHHHCCCCCCCEEEEEeC
Confidence 466776544 4789999999999999999999999999999999987 33 47889999999999999999875
No 81
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=99.45 E-value=1.7e-13 Score=121.50 Aligned_cols=72 Identities=32% Similarity=0.583 Sum_probs=68.7
Q ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCCCcCeEEecCCeecCCcccchhcCCCCCcEEEEeec
Q 016931 1 MRITVMTADEQIISLDVDPHETVENVKALLEVETQVPLQQQQLLYNGREMNNAEKLSALGVKDEDLVMMVSN 72 (380)
Q Consensus 1 M~ItVk~~~g~~~~i~V~~~~TV~~LK~~I~~~~gip~~~q~Li~~Gk~L~D~~tL~~~gI~dg~~I~l~~~ 72 (380)
|+|+|++.+|+++.++|++++||.+||++|+.++|+|+++|+|+|+|+.|+|+.+|++|||++|++|||+.+
T Consensus 97 ~~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~y~i~~g~tl~l~~r 168 (172)
T 3u30_A 97 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 168 (172)
T ss_dssp EEEEEEESSCCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTSBSGGGTCCTTCEEEECC-
T ss_pred ccceeecccCcceeEEecCCCCHHHHHHHHHHHhCCCceeEEEEECCccCCCCCcHHHhCCCCCCEEEEEEe
Confidence 578999999999999999999999999999999999999999999999999999999999999999999854
No 82
>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.45 E-value=1.1e-13 Score=112.09 Aligned_cols=71 Identities=18% Similarity=0.280 Sum_probs=64.3
Q ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCCCcCeEEec--CCeecCCcccchhcCCCCCcEEEEeec
Q 016931 1 MRITVMTADEQIISLDVDPHETVENVKALLEVETQVPLQQQQLLY--NGREMNNAEKLSALGVKDEDLVMMVSN 72 (380)
Q Consensus 1 M~ItVk~~~g~~~~i~V~~~~TV~~LK~~I~~~~gip~~~q~Li~--~Gk~L~D~~tL~~~gI~dg~~I~l~~~ 72 (380)
|.++++...|+.+.++|++++||++||++|+.++||||++|+|+| .|+ |+|+.+|++|+|++|++|||+-.
T Consensus 9 m~~~~vk~~Gk~~~v~v~~~~TV~~LK~~I~~~tgIpp~~QkLi~~~~gk-L~D~~tLs~~~I~~gstL~lvl~ 81 (100)
T 2dzm_A 9 MLDFRVEYRDRNVDVVLEDTCTVGEIKQILENELQIPVSKMLLKGWKTGD-VEDSTVLKSLHLPKNNSLYVLTP 81 (100)
T ss_dssp EEEEEEECSSCEEEEEEETTSBHHHHHHHHHHHHCCCTTTCCEECCSSSC-CCTTSBHHHHCCCSEEEEEECCS
T ss_pred eEEEEEEeCCeEEEEEECCCCcHHHHHHHHHHHHCCChhHeEEEccCCCC-CCCcCCHHHcCCCCCCEEEEEec
Confidence 566666678999999999999999999999999999999999996 555 99999999999999999999854
No 83
>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A
Probab=99.45 E-value=1.7e-13 Score=113.84 Aligned_cols=71 Identities=17% Similarity=0.286 Sum_probs=65.7
Q ss_pred EEEEEeC----------CCCEEEEEeCCCCCHHHHHHHHHHHhCCCCcCeEEecCCeecCCcccchhcCCCCCcEEEEee
Q 016931 2 RITVMTA----------DEQIISLDVDPHETVENVKALLEVETQVPLQQQQLLYNGREMNNAEKLSALGVKDEDLVMMVS 71 (380)
Q Consensus 2 ~ItVk~~----------~g~~~~i~V~~~~TV~~LK~~I~~~~gip~~~q~Li~~Gk~L~D~~tL~~~gI~dg~~I~l~~ 71 (380)
+|+|+.+ +|+.+.++|++++||.+||++|+..+|+|+++|+|+|+|+.|+|+.+|++|||++|++|||+.
T Consensus 27 ~l~V~~p~~~~~~~~~L~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrL~~~Gk~L~D~~tL~~y~i~~g~~i~lv~ 106 (115)
T 1we7_A 27 SIKVQVPNMQDKTEWKLNGQGLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQYEGIFIKDSNSLAYYNMASGAVIHLAL 106 (115)
T ss_dssp EEEEEECCCSSSCSSCCSSEEEEEEECSCSBTHHHHHHHHHHSSCCTTTEEEEETTEEECTTSBHHHHTCCSSCEEEEEE
T ss_pred EEEEEcCCCccccccccCCeEEEEEECCCCCHHHHHHHHHHHHCCChHHEEEEECCEECCCCCCHHHCCCCCCCEEEEEE
Confidence 5677765 367899999999999999999999999999999999999999999999999999999999985
Q ss_pred c
Q 016931 72 N 72 (380)
Q Consensus 72 ~ 72 (380)
+
T Consensus 107 r 107 (115)
T 1we7_A 107 K 107 (115)
T ss_dssp C
T ss_pred E
Confidence 4
No 84
>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.43 E-value=3.3e-13 Score=108.32 Aligned_cols=73 Identities=14% Similarity=0.120 Sum_probs=63.7
Q ss_pred EEEEEeCCCC-EEEEEeCCCCCHHHHHHHHHHHhCCCCcCeEEecCC---ee----cCCcccchhcCCCCCcEEEEeecC
Q 016931 2 RITVMTADEQ-IISLDVDPHETVENVKALLEVETQVPLQQQQLLYNG---RE----MNNAEKLSALGVKDEDLVMMVSNA 73 (380)
Q Consensus 2 ~ItVk~~~g~-~~~i~V~~~~TV~~LK~~I~~~~gip~~~q~Li~~G---k~----L~D~~tL~~~gI~dg~~I~l~~~~ 73 (380)
.|+|++.... .++++|++++||++||++|+.++|+|+++|+|+|.| +. ++|+++|++|||++|++|||+...
T Consensus 9 ~l~I~~~~~~~~~~~~v~~~~TV~~lK~ki~~~~gip~~~qrL~~~~~~g~~~~~l~~D~~tL~~y~i~~g~~l~v~d~~ 88 (95)
T 1v6e_A 9 MVFISSSLNSFRSEKRYSRSLTIAEFKCKLELVVGSPASCMELELYGADDKFYSKLDQEDALLGSYPVDDGCRIHVIDHS 88 (95)
T ss_dssp EEEEEETTSSSCEEEEECTTSBHHHHHHHHHHHTCSCTTTCBCEEECSSSCEEEECCCSSSBTTSSSCCTTCEEEEBCCS
T ss_pred EEEEEECCCCeeEEEEcCccCHHHHHHHHHHHHHCCCHHHeEEEEeCCCCccccccCCCcCCHhHCCCCCCCEEEEEECC
Confidence 5777775543 689999999999999999999999999999999976 43 578999999999999999999754
Q ss_pred C
Q 016931 74 A 74 (380)
Q Consensus 74 ~ 74 (380)
+
T Consensus 89 P 89 (95)
T 1v6e_A 89 G 89 (95)
T ss_dssp C
T ss_pred c
Confidence 3
No 85
>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B*
Probab=99.37 E-value=1e-12 Score=126.46 Aligned_cols=72 Identities=32% Similarity=0.583 Sum_probs=69.1
Q ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCCCcCeEEecCCeecCCcccchhcCCCCCcEEEEeec
Q 016931 1 MRITVMTADEQIISLDVDPHETVENVKALLEVETQVPLQQQQLLYNGREMNNAEKLSALGVKDEDLVMMVSN 72 (380)
Q Consensus 1 M~ItVk~~~g~~~~i~V~~~~TV~~LK~~I~~~~gip~~~q~Li~~Gk~L~D~~tL~~~gI~dg~~I~l~~~ 72 (380)
|+|+|++++|+.+.++|++++||.+||++|+.++|+|+++|+|+|+|++|+|+++|++|||++|++|||+.+
T Consensus 234 MqI~VKtl~Gk~~~leV~~s~TV~dLK~kI~~~~GIp~~~QRLi~~Gk~L~D~~TLsdygI~~gstL~LvlR 305 (307)
T 3ai5_A 234 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 305 (307)
T ss_dssp EEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTGGGTCCTTCEEEEEC-
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEeCCeecCCCCCHHHcCCCCCCEEEEEEe
Confidence 789999999999999999999999999999999999999999999999999999999999999999999854
No 86
>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}
Probab=99.34 E-value=1.2e-12 Score=103.00 Aligned_cols=72 Identities=11% Similarity=0.227 Sum_probs=64.8
Q ss_pred CEEEEEeCCCCEEEEE-eCCCCCHHHHHHHHHHHhCCCCcCeEEecC--CeecC---CcccchhcCCCCCcEEEEeecC
Q 016931 1 MRITVMTADEQIISLD-VDPHETVENVKALLEVETQVPLQQQQLLYN--GREMN---NAEKLSALGVKDEDLVMMVSNA 73 (380)
Q Consensus 1 M~ItVk~~~g~~~~i~-V~~~~TV~~LK~~I~~~~gip~~~q~Li~~--Gk~L~---D~~tL~~~gI~dg~~I~l~~~~ 73 (380)
|+|+|++.+|+. .++ +++++||.+||+.|+.++|+|+++|+|+|+ +|.|. |+++|++|||++|++|||....
T Consensus 1 m~i~vr~~~G~~-~v~~l~~~~Tv~~Lk~~I~~~~gi~~~~qrL~~~~p~k~l~l~~~~~tL~~~gl~~g~~l~v~~~~ 78 (86)
T 2kzr_A 1 WRVRCKAKGGTH-LLQGLSSRTRLRELQGQIAAITGIAPGSQRILVGYPPECLDLSDRDITLGDLPIQSGDMLIVEEDQ 78 (86)
T ss_dssp CCEEEEETTEEE-EECSCCTTCBHHHHHHHHHHHTCCCTTTCCCEESSCCCCCCCCCSSCBTTTSSCCTTCEEECCCCS
T ss_pred CEEEEEcCCCCE-EeeecCCCCCHHHHHHHHHHHhCCCccceEEEeCCCCcccccCCCCCCHHHcCCCCCCEEEEEeCC
Confidence 899999999965 477 999999999999999999999999999986 58874 5789999999999999998653
No 87
>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1
Probab=99.33 E-value=2.8e-12 Score=107.66 Aligned_cols=72 Identities=15% Similarity=0.213 Sum_probs=63.1
Q ss_pred EEEEEeCCCC-EEEEEeCCCCCHHHHHHHHHHHhCCCCcCeEEecCC---ee----cCCcccchhcCCCCCcEEEEeecC
Q 016931 2 RITVMTADEQ-IISLDVDPHETVENVKALLEVETQVPLQQQQLLYNG---RE----MNNAEKLSALGVKDEDLVMMVSNA 73 (380)
Q Consensus 2 ~ItVk~~~g~-~~~i~V~~~~TV~~LK~~I~~~~gip~~~q~Li~~G---k~----L~D~~tL~~~gI~dg~~I~l~~~~ 73 (380)
.|+|++..+. .+++++++++||++||.+|+.++|+|+++|+|+|.| +. ++|+++|++|||++|++|||+...
T Consensus 8 ~l~V~~~~~~~~~e~~v~~~~TV~~lK~ki~~~~Gip~~~qrL~~~g~~~~~~~~l~~D~~tL~~y~i~~g~~ihvvd~~ 87 (122)
T 1t0y_A 8 DLEITTNATDFPMEKKYPAGMSLNDLKKKLELVVGTTVDSMRIQLFDGDDQLKGELTDGAKSLKDLGVRDGYRIHAVDVT 87 (122)
T ss_dssp EEEEEESSCCSCEEEEEETTSBHHHHHHHHHHHHCCCTTTEEEEEECSSSSEEEECCCCSSBTTTTTCCSSEEEEEEECT
T ss_pred EEEEEECCCCccEEEEeCCCCcHHHHHHHHHHHhCCCHHHeEEEEecCCCccccccCCCcCCHHHCCCCCCCEEEEEeCC
Confidence 5777775553 688999999999999999999999999999999977 42 478899999999999999999864
No 88
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9
Probab=99.26 E-value=4.7e-13 Score=120.01 Aligned_cols=66 Identities=17% Similarity=0.229 Sum_probs=0.0
Q ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCCCcCeEEecCCeecCCcccchhcCCCCCcEEEEee
Q 016931 1 MRITVMTADEQIISLDVDPHETVENVKALLEVETQVPLQQQQLLYNGREMNNAEKLSALGVKDEDLVMMVS 71 (380)
Q Consensus 1 M~ItVk~~~g~~~~i~V~~~~TV~~LK~~I~~~~gip~~~q~Li~~Gk~L~D~~tL~~~gI~dg~~I~l~~ 71 (380)
|+|+|++++|++++++|++++||.+||.+|+.+.|+|+++|+|+|+|++|+|+.||+ +|++|||+.
T Consensus 1 MqI~VKtL~GktitLeV~~sdTV~~LK~kI~~keGIP~~qQRLIf~GK~LeD~~TLs-----~~STLhLvl 66 (189)
T 2xzm_9 1 MQVQVKTLEGETKIYTLEQGTSVLDLKSQISQDMGFEIDMMTLVNNGFIAPNTELVT-----DDVTYYLSL 66 (189)
T ss_dssp -----------------------------------------------------------------------
T ss_pred CEEEEEcCCCCEEEEEECCcChHHHHHHHHHHHhCcChhHEEEEecCeECCCCCccc-----CCCEEEEEE
Confidence 899999999999999999999999999999999999999999999999999999999 899999983
No 89
>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster}
Probab=99.26 E-value=6.4e-12 Score=122.05 Aligned_cols=73 Identities=29% Similarity=0.377 Sum_probs=66.3
Q ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCCCcCeEEe---cCCeecCCcccchhcCCCCCcEEEEeecCC
Q 016931 1 MRITVMTADEQIISLDVDPHETVENVKALLEVETQVPLQQQQLL---YNGREMNNAEKLSALGVKDEDLVMMVSNAA 74 (380)
Q Consensus 1 M~ItVk~~~g~~~~i~V~~~~TV~~LK~~I~~~~gip~~~q~Li---~~Gk~L~D~~tL~~~gI~dg~~I~l~~~~~ 74 (380)
|+|+|+. +|+.+.++|++++||++||++|+.++|||+++|+|+ |+|++|+|+.+|++|||++|++|||+..+.
T Consensus 6 i~i~Vk~-~g~~~~v~v~~~~Tv~~lK~~I~~~tgVpp~~QkLi~~k~~Gk~l~D~~~L~~~~ik~g~~l~L~gs~~ 81 (320)
T 3shq_A 6 VVVIVKW-SGKEYPVDLTDQDTVEVLRHEIFRKTQVRPERQKLLNLKYKGKTAADNVKISALELKPNFKLMMVGSTE 81 (320)
T ss_dssp EEEEEEE-TTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGCEETTCBSSSSBCCTTSBTTSSCCC--CEEEEECCCC
T ss_pred EEEEEEE-CCEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEeecccCCcccCccccHHHcCCCCCCEEEEEccch
Confidence 4688897 789999999999999999999999999999999999 899999999999999999999999996543
No 90
>3slz_A GAG-Pro-POL polyprotein; beta sheet and dimer, protease, peptide inhibitor, TL-3 PEPS virus, hydrolase-hydrolase inhibitor complex; HET: 3TL; 1.40A {Dg-75 murine leukemia virus} PDB: 3nr6_A* 3sm1_A* 3sm2_A* 4exh_A*
Probab=99.23 E-value=2e-11 Score=103.43 Aligned_cols=104 Identities=18% Similarity=0.219 Sum_probs=76.7
Q ss_pred cccceeEEeeeecCeeEEEEEcCCccccccCHHHHHHcCCccccCCcceeEeecCcceeEEeEEEEEeEEEcCEEEeEEE
Q 016931 192 ARVVMLYVDMEVNGIPLKAFVDSGAQSTIISKSCAERCGLLRLLDDRYRGVAHGVGQSEILGRIHVAPIKIGNVFYPCSF 271 (380)
Q Consensus 192 ~~~~~lyv~v~Ing~~v~alVDTGA~~siIs~~~a~rlgL~~~~~~~~~~~~~gvg~~~~~g~i~~~~i~ig~~~~~~~~ 271 (380)
.+..+.++.++|||+++.|||||||+.|+++...+. +. .......|+|............|+|++......+
T Consensus 18 d~~~RP~v~i~I~G~~~~~LlDTGAd~tVl~~~~~p---~~-----~~p~~I~GiGG~i~vr~~~~i~IeI~g~~~~~~~ 89 (132)
T 3slz_A 18 EPPPEPRITLKVGGQPVTFLVDTGAQHSVLTQNPGP---LS-----DKSAWVQGATGGKRYRWTTDRKVHLATGKVTHSF 89 (132)
T ss_dssp CCCCSSEEEEEETTEEEEEEECTTCSSCEECSCCCS---EE-----EEEEEEECSSCEEEEEEECCEEEEETTEEEEECC
T ss_pred CccCCCEEEEEECCEEEEEEEeCCCCeEEEccccCC---CC-----CCceEEEccCCEEEEEEEeeeEEEECCeeecceE
Confidence 445688999999999999999999999999976443 11 1124566776543344444468999998887777
Q ss_pred EEecCCCCceeeeHHHHhhcCeEEEcC-CCEEEE
Q 016931 272 VVLDSPNMEFLFGLDMLRKHQCIIDLK-ENVLRV 304 (380)
Q Consensus 272 ~Vl~~~~~d~iLG~D~L~~~~~~ID~~-~~~l~i 304 (380)
.|+.. ...-|||+|||.+++|.||+. .+.+.+
T Consensus 90 lV~~~-tPvnLLGrd~Ltqlg~tL~fp~~g~~~~ 122 (132)
T 3slz_A 90 LHVPD-CPYPLLGRDLLTKLKAQIHFEGSGAQVV 122 (132)
T ss_dssp EECTT-SSSCEECHHHHHHHTCEEEEETTEEEEE
T ss_pred EEECC-CCccEECHhhHhhCCcEEECCCCCceee
Confidence 66544 345799999999999999997 444443
No 91
>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=99.22 E-value=2.8e-11 Score=96.99 Aligned_cols=72 Identities=14% Similarity=0.362 Sum_probs=68.9
Q ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCCCcCeEEecCCeecCCcccchhcCCCCCcEEEEeec
Q 016931 1 MRITVMTADEQIISLDVDPHETVENVKALLEVETQVPLQQQQLLYNGREMNNAEKLSALGVKDEDLVMMVSN 72 (380)
Q Consensus 1 M~ItVk~~~g~~~~i~V~~~~TV~~LK~~I~~~~gip~~~q~Li~~Gk~L~D~~tL~~~gI~dg~~I~l~~~ 72 (380)
|+|+|++.+|+.+.+.|.++++++.|+..++.+.|+|+++++|+|+|+.|.++.|+++|++++||+|+++..
T Consensus 8 i~ikVk~~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~ 79 (94)
T 2io1_B 8 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQ 79 (94)
T ss_dssp EEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCTTTTTCCTTCEEEEEEC
T ss_pred EEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEe
Confidence 578899989999999999999999999999999999999999999999999999999999999999999864
No 92
>1fmb_A EIAV protease; hydrolase (acid proteinase), RNA-directed DNA polymerase, AS protease, endonuclease, polyprotein; HET: HYB; 1.80A {Equine infectious anemia virus} SCOP: b.50.1.1 PDB: 2fmb_A*
Probab=99.20 E-value=7.7e-11 Score=95.94 Aligned_cols=97 Identities=19% Similarity=0.177 Sum_probs=78.1
Q ss_pred ceeEEeeeecCeeEEEEEcCCccccccCHHHHHHcCCccc-cCCcceeEeecCcceeEEeEEEEEeEEEcCEEEeEEEEE
Q 016931 195 VMLYVDMEVNGIPLKAFVDSGAQSTIISKSCAERCGLLRL-LDDRYRGVAHGVGQSEILGRIHVAPIKIGNVFYPCSFVV 273 (380)
Q Consensus 195 ~~lyv~v~Ing~~v~alVDTGA~~siIs~~~a~rlgL~~~-~~~~~~~~~~gvg~~~~~g~i~~~~i~ig~~~~~~~~~V 273 (380)
.+.++.++|+|+++.||+||||..|+++...+.++++... -. .....|+|...... ...+.+++.+......+.|
T Consensus 7 ~RP~v~v~I~Gq~~e~LLDTGAD~TVl~~~~w~~i~lp~~~w~---p~~i~GiGG~i~v~-~~~i~i~i~g~~~~gtvlv 82 (104)
T 1fmb_A 7 KRPTTIVLINDTPLNVLLDTGADTSVLTTAHYNRLKYRGRKYQ---GTGIGGVGGNVETF-STPVTIKKKGRHIKTRMLV 82 (104)
T ss_dssp SCCEEEEEETTEEEEEEECTTCSSCEEEHHHHHHCSSCCCCEE---CCCEEETTEEECCE-EEEEEEEETTEEEEEEEEE
T ss_pred CCCEEEEEECCEEEEEEeccCCCcEEEccccCcccCCCCccCC---ccEEEeCCCeEEee-EeeeEEEECCeEEEEEEEE
Confidence 4789999999999999999999999999999999988543 11 23566777543333 6778999999888878777
Q ss_pred ecCCCCceeeeHHHHhhcCeEEEc
Q 016931 274 LDSPNMEFLFGLDMLRKHQCIIDL 297 (380)
Q Consensus 274 l~~~~~d~iLG~D~L~~~~~~ID~ 297 (380)
-+. ..-|||.|+|.+.+|.+||
T Consensus 83 ~~t--p~niiGRd~L~qlg~tLnf 104 (104)
T 1fmb_A 83 ADI--PVTILGRDILQDLGAKLVL 104 (104)
T ss_dssp ESC--SSCEECHHHHHHTTCCCCC
T ss_pred CCC--CCCEecHhHHhhcCcEEeC
Confidence 554 3469999999999999886
No 93
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=99.20 E-value=5.8e-11 Score=90.29 Aligned_cols=70 Identities=14% Similarity=0.368 Sum_probs=67.4
Q ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCCCcCeEEecCCeecCCcccchhcCCCCCcEEEEe
Q 016931 1 MRITVMTADEQIISLDVDPHETVENVKALLEVETQVPLQQQQLLYNGREMNNAEKLSALGVKDEDLVMMV 70 (380)
Q Consensus 1 M~ItVk~~~g~~~~i~V~~~~TV~~LK~~I~~~~gip~~~q~Li~~Gk~L~D~~tL~~~gI~dg~~I~l~ 70 (380)
|+|+|++.+|+.+.+.|.++++++.|+...+++.|+++++++++|+|+.|.++.|.++|++++||+|++.
T Consensus 2 i~lkV~~~~g~~v~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~~l~medgD~Idv~ 71 (72)
T 1wm3_A 2 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVF 71 (72)
T ss_dssp EEEEEECTTSCEEEEEECTTSCTHHHHHHHHHHHTCCTTTCEEEETTEECCTTCCTTTTTCCTTEEEEEE
T ss_pred EEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEE
Confidence 5789999899999999999999999999999999999999999999999999999999999999999985
No 94
>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A
Probab=99.15 E-value=1.7e-10 Score=89.33 Aligned_cols=70 Identities=14% Similarity=0.381 Sum_probs=66.7
Q ss_pred CEEEEEeCCCC-EEEEEeCCCCCHHHHHHHHHHHhCCCCcCeEEecCCeecCCcccchhcCCCCCcEEEEe
Q 016931 1 MRITVMTADEQ-IISLDVDPHETVENVKALLEVETQVPLQQQQLLYNGREMNNAEKLSALGVKDEDLVMMV 70 (380)
Q Consensus 1 M~ItVk~~~g~-~~~i~V~~~~TV~~LK~~I~~~~gip~~~q~Li~~Gk~L~D~~tL~~~gI~dg~~I~l~ 70 (380)
|+|+|++.+|+ .+.+.|.+++++..|+...+.+.|+++++++|+|+|+.|.++.|.++|++++||+|++.
T Consensus 8 i~ikV~~~~g~~~i~~~i~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~~l~medgD~Idv~ 78 (79)
T 3a4r_A 8 LRLRVQGKEKHQMLEISLSPDSPLKVLMSHYEEAMGLSGHKLSFFFDGTKLSGKELPADLGLESGDLIEVW 78 (79)
T ss_dssp EEEEEECSSTTCEEEEEECTTSCHHHHHHHHHHHHTCTTCCCEEEETTEECCSCCCHHHHTCCTTCEEEEE
T ss_pred EEEEEEeCCCCEEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEe
Confidence 57889998896 89999999999999999999999999999999999999999999999999999999985
No 95
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1
Probab=99.13 E-value=1.5e-10 Score=92.11 Aligned_cols=72 Identities=14% Similarity=0.362 Sum_probs=68.6
Q ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCCCcCeEEecCCeecCCcccchhcCCCCCcEEEEeec
Q 016931 1 MRITVMTADEQIISLDVDPHETVENVKALLEVETQVPLQQQQLLYNGREMNNAEKLSALGVKDEDLVMMVSN 72 (380)
Q Consensus 1 M~ItVk~~~g~~~~i~V~~~~TV~~LK~~I~~~~gip~~~q~Li~~Gk~L~D~~tL~~~gI~dg~~I~l~~~ 72 (380)
|+|+|++.+|+.+.+.|.++++++.|+...+.+.|+++++++|+|+|+.|.++.|.++|++++||+|+++..
T Consensus 6 i~ikVk~~~g~~v~~~vk~~t~l~kl~~~y~~~~gi~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~ 77 (91)
T 2io0_B 6 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQ 77 (91)
T ss_dssp EEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHTTCCSTTEEEEETTEECCTTCCTTTTTCCTTEEEEEEEC
T ss_pred EEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEe
Confidence 578888888999999999999999999999999999999999999999999999999999999999999864
No 96
>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.11 E-value=1.6e-10 Score=92.83 Aligned_cols=72 Identities=24% Similarity=0.381 Sum_probs=61.3
Q ss_pred EEEEEe---CCCCEEEEEeCCCCCHHHHHHHHHHHhCCCCcCeEEecCC------e-ec-CCcccchhcCCCCCcEEEEe
Q 016931 2 RITVMT---ADEQIISLDVDPHETVENVKALLEVETQVPLQQQQLLYNG------R-EM-NNAEKLSALGVKDEDLVMMV 70 (380)
Q Consensus 2 ~ItVk~---~~g~~~~i~V~~~~TV~~LK~~I~~~~gip~~~q~Li~~G------k-~L-~D~~tL~~~gI~dg~~I~l~ 70 (380)
+|+|++ .+++.+...+++++||.+||.+|+..+|+|+..|+|+|.+ . .| +|.++|+.|||.+|++|||.
T Consensus 11 ~l~I~~~~~~~~~~~e~~l~~~~TV~~LK~~i~~~~gip~~~q~L~~~~~~~~~~~~~L~~d~~~L~~y~i~~G~~I~V~ 90 (97)
T 1wjn_A 11 TLKIKCSNQPERQILEKQLPDSMTVQKVKGLLSRLLKVPVSELLLSYESSKMPGREIELENDLQPLQFYSVENGDCLLVR 90 (97)
T ss_dssp EEEEEESSCSSSCCEEEEEETTSBHHHHHHHHHTTTTCCTTTCEEEEECTTSCSCEEECCCSSSBSGGGTCCTTCEEEEE
T ss_pred EEEEEecCCCCCcEEEEECCCCCCHHHHHHHHHHHHCCChhHeEEEEEcCCCCceeeccCCCcccHhhcCCCCCCEEEEE
Confidence 466665 3577899999999999999999999999999999999863 2 25 45689999999999999998
Q ss_pred ecC
Q 016931 71 SNA 73 (380)
Q Consensus 71 ~~~ 73 (380)
...
T Consensus 91 d~~ 93 (97)
T 1wjn_A 91 WSG 93 (97)
T ss_dssp CCS
T ss_pred ecC
Confidence 753
No 97
>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A
Probab=99.07 E-value=3.8e-10 Score=90.10 Aligned_cols=72 Identities=14% Similarity=0.362 Sum_probs=68.0
Q ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCCCcCeEEecCCeecCCcccchhcCCCCCcEEEEeec
Q 016931 1 MRITVMTADEQIISLDVDPHETVENVKALLEVETQVPLQQQQLLYNGREMNNAEKLSALGVKDEDLVMMVSN 72 (380)
Q Consensus 1 M~ItVk~~~g~~~~i~V~~~~TV~~LK~~I~~~~gip~~~q~Li~~Gk~L~D~~tL~~~gI~dg~~I~l~~~ 72 (380)
|.|+|++.+|+.+.+.|.+++++..|+..++.+.|+++++++|+|+|+.|.++.|.++|++.+||+|+++..
T Consensus 18 i~ikV~~~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~dl~medgD~Idv~~~ 89 (93)
T 2d07_B 18 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQ 89 (93)
T ss_dssp EEEEEECTTSCEEEEEEETTSCHHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEEC
T ss_pred EEEEEECCCCCEEEEEEccCCHHHHHHHHHHHHhCCCccceEEEECCEEcCCCCCHHHcCCCCCCEEEEEee
Confidence 468888888998999999999999999999999999999999999999999999999999999999999864
No 98
>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.06 E-value=4.3e-10 Score=91.66 Aligned_cols=72 Identities=14% Similarity=0.362 Sum_probs=68.5
Q ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCCCcCeEEecCCeecCCcccchhcCCCCCcEEEEeec
Q 016931 1 MRITVMTADEQIISLDVDPHETVENVKALLEVETQVPLQQQQLLYNGREMNNAEKLSALGVKDEDLVMMVSN 72 (380)
Q Consensus 1 M~ItVk~~~g~~~~i~V~~~~TV~~LK~~I~~~~gip~~~q~Li~~Gk~L~D~~tL~~~gI~dg~~I~l~~~ 72 (380)
|+|+|++.+|+.+.+.|.+++++..|+..++.+.|+++++++|+|+|+.|.++.|.++|++.+||+|+++..
T Consensus 25 I~IkVk~~~g~~i~~kVk~~t~l~kL~~~y~ek~gi~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~ 96 (104)
T 1wz0_A 25 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQ 96 (104)
T ss_dssp EEEEEECSSSCEEEEEECTTSCHHHHHHHHHHHHTCCTTTSCEESSSSBCCTTSCTTTTTCCTTEEEEECCC
T ss_pred EEEEEECCCCCEEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEe
Confidence 578889888999999999999999999999999999999999999999999999999999999999999864
No 99
>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}
Probab=99.00 E-value=5.7e-10 Score=91.76 Aligned_cols=72 Identities=13% Similarity=0.335 Sum_probs=68.7
Q ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCCCcCeEEecCCeecCCcccchhcCCCCCcEEEEeec
Q 016931 1 MRITVMTADEQIISLDVDPHETVENVKALLEVETQVPLQQQQLLYNGREMNNAEKLSALGVKDEDLVMMVSN 72 (380)
Q Consensus 1 M~ItVk~~~g~~~~i~V~~~~TV~~LK~~I~~~~gip~~~q~Li~~Gk~L~D~~tL~~~gI~dg~~I~l~~~ 72 (380)
|.|+|++.+|+.+.+.|.+++++..|+...+.+.|+++++++|+|+|+.|.++.|.++|++.+||+|+++..
T Consensus 27 I~IkVk~~~g~~i~fkVk~~t~l~kL~~ay~ek~gi~~~~~rfiFdG~~L~~~~Tp~dl~mEDgD~Idv~~~ 98 (110)
T 2k8h_A 27 VAVKVVNADGAEMFFRIKSRTALKKLIDTYCKKQGISRNSVRFLFDGTPIDETKTPEELGMEDDDVIDAMVE 98 (110)
T ss_dssp EEEEEEETTSCCEEEEECTTSSHHHHHHHHHHHHTCCSSSCEEESSSCBCCSSSHHHHHHCSSEEEEEEECC
T ss_pred EEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEc
Confidence 578899988998999999999999999999999999999999999999999999999999999999999865
No 100
>3ec0_A Protease; HIV-2, inhibitor, hydrolase; HET: GRL; 1.18A {Human immunodeficiency virus type 2} SCOP: b.50.1.1 PDB: 1hii_A* 1hsi_A 1hsh_A* 1idb_A* 1jld_A* 2mip_A 1ida_A* 3ebz_A* 3ecg_A* 3s45_A* 4upj_A* 1ivq_A* 1ivp_A 2hpf_A 3upj_A* 2hpe_A* 5upj_A* 6upj_A* 1sip_A 1tcw_A* ...
Probab=98.97 E-value=6.8e-09 Score=83.35 Aligned_cols=92 Identities=20% Similarity=0.318 Sum_probs=70.3
Q ss_pred ceeEEeeeecCeeEEEEEcCCccccccCHHHHHHcCCccccCCcc-eeEeecCcceeEEeEEEEEeEEEcCEEEeEEEEE
Q 016931 195 VMLYVDMEVNGIPLKAFVDSGAQSTIISKSCAERCGLLRLLDDRY-RGVAHGVGQSEILGRIHVAPIKIGNVFYPCSFVV 273 (380)
Q Consensus 195 ~~lyv~v~Ing~~v~alVDTGA~~siIs~~~a~rlgL~~~~~~~~-~~~~~gvg~~~~~g~i~~~~i~ig~~~~~~~~~V 273 (380)
.+-|+.++|||+.+.||+||||..|+|+. ..+ ..++ ..+..|+|......+...+.+++.+......+.|
T Consensus 7 ~RP~vti~I~Gq~~e~LLDTGAD~TVl~~-----~~~----Pg~w~pk~igGiGG~i~v~qy~~i~iei~g~~~~gtvlV 77 (99)
T 3ec0_A 7 KRPVVTAYIEGQPVEVLLDTGADDSIVAG-----IEL----GNNYSPKIVGGIGGFINTKEYKNVEIEVLNKKVRATIMT 77 (99)
T ss_dssp SCCEEEEEETTEEEEEEECTTCSSCEESS-----CCC----CSCCEEEEEEETTEEEEEEEEEEEEEEETTEEEEEEEEE
T ss_pred cCCeEEEEECCEEEEEEEecCCCceEEcC-----ccc----CCCCCceEEEecCCcEeeeEEeeEEEEECCeEEEEEEEe
Confidence 46799999999999999999999999963 333 2223 2356777765444455667899999887777777
Q ss_pred ecCCCCceeeeHHHHhhcCeEEEc
Q 016931 274 LDSPNMEFLFGLDMLRKHQCIIDL 297 (380)
Q Consensus 274 l~~~~~d~iLG~D~L~~~~~~ID~ 297 (380)
-+. .+ =|+|-|+|.+++|.++|
T Consensus 78 ~~t-Pv-niiGRnlLtqlG~tLnf 99 (99)
T 3ec0_A 78 GDT-PI-NIFGRNILTALGMSLNL 99 (99)
T ss_dssp ECC-SS-CEECHHHHHHHTCEEEC
T ss_pred CCC-Cc-CeeehhhHhhcCcEEeC
Confidence 543 33 58999999999999986
No 101
>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1
Probab=98.97 E-value=1.3e-09 Score=88.97 Aligned_cols=71 Identities=11% Similarity=0.267 Sum_probs=67.5
Q ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCCCcCeEEecCCeecCCcccchhcCCCCCcEEEEeec
Q 016931 1 MRITVMTADEQIISLDVDPHETVENVKALLEVETQVPLQQQQLLYNGREMNNAEKLSALGVKDEDLVMMVSN 72 (380)
Q Consensus 1 M~ItVk~~~g~~~~i~V~~~~TV~~LK~~I~~~~gip~~~q~Li~~Gk~L~D~~tL~~~gI~dg~~I~l~~~ 72 (380)
|+|+|++ +|+.+.+.|..++++..|+...+.+.|+++++++|+|+|+.|.++.|.++|++.+||+|+++..
T Consensus 32 I~IkV~~-~g~~i~fkIk~tt~l~kL~~ay~ek~gi~~~~~rF~FdG~rl~~~~Tp~dl~medgD~Idv~~~ 102 (106)
T 2eke_C 32 INLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHRE 102 (106)
T ss_dssp EEEEEEC-SSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEEC
T ss_pred EEEEEec-CCcEEEEEeCCCCHHHHHHHHHHHHhCCCcccEEEEECCeEcCCCCCHHHcCCCCCCEEEEEee
Confidence 5788888 8999999999999999999999999999999999999999999999999999999999999864
No 102
>2hs1_A HIV-1 protease; ultra-high resolution active site surface binding site, HYDR; HET: 017; 0.84A {Human immunodeficiency virus 1} PDB: 3nu4_A* 3tl9_A* 3tkw_A* 3tkg_A* 3ndu_A* 3ndt_A* 3k4v_A* 3a2o_A* 1fgc_C* 2a1e_A* 2aod_A* 2aoi_A* 2aoj_A* 2hb3_A* 2ien_A* 1sdt_A* 2z4o_A* 2zye_A* 2nmw_A* 3b7v_A* ...
Probab=98.94 E-value=1.2e-08 Score=82.03 Aligned_cols=92 Identities=20% Similarity=0.288 Sum_probs=72.4
Q ss_pred ceeEEeeeecCeeEEEEEcCCccccccCHHHHHHcCCccccCCcce-eEeecCcceeEEeEEEEEeEEEcCEEEeEEEEE
Q 016931 195 VMLYVDMEVNGIPLKAFVDSGAQSTIISKSCAERCGLLRLLDDRYR-GVAHGVGQSEILGRIHVAPIKIGNVFYPCSFVV 273 (380)
Q Consensus 195 ~~lyv~v~Ing~~v~alVDTGA~~siIs~~~a~rlgL~~~~~~~~~-~~~~gvg~~~~~g~i~~~~i~ig~~~~~~~~~V 273 (380)
.+-++.++|+|+.+.||+||||..|+++.. .+ ..++. ....|+|......+...+.+++.+......+.|
T Consensus 7 ~rP~vtvkI~Gq~~eaLLDTGAD~TVl~~~-----~~----p~~wkpk~igGiGG~i~v~qy~qi~iei~g~~~~gtvlV 77 (99)
T 2hs1_A 7 KRPLVTIKIGGQLKEALLDTGADDTIIEEM-----SL----PGRWKPKMIGGIGGFIKVRQYDQIIIEIAGHKAIGTVLV 77 (99)
T ss_dssp SCCEEEEEETTEEEEEEECTTCSSEEESCC-----SS----CCCCEEEEEEETTEEEEEEEEEEEEEEETTEEEEEEEEE
T ss_pred CCCEEEEEECCEEEEEEeccCCCcEEEecc-----cC----CCCCCCcEEEeCCCcEeeeEeccEEEEEeCCEEEEEEEe
Confidence 467899999999999999999999999952 33 22332 467788765555566777899999888888888
Q ss_pred ecCCCCceeeeHHHHhhcCeEEEc
Q 016931 274 LDSPNMEFLFGLDMLRKHQCIIDL 297 (380)
Q Consensus 274 l~~~~~d~iLG~D~L~~~~~~ID~ 297 (380)
-+. .. =|+|.|+|.+.+|.+||
T Consensus 78 ~~t-Pv-niiGRd~Ltqlg~tLnf 99 (99)
T 2hs1_A 78 GPT-PV-NIIGRNLLTQIGATLNF 99 (99)
T ss_dssp SCC-SS-CEECHHHHTTTTCEEEC
T ss_pred CCC-cc-CchhHhHHHHcCCEEeC
Confidence 554 33 49999999999999986
No 103
>3ka2_A [L-Ala51;Gly51']HIV-1 protease; beta-barrel, hydrolase-hydrolase inhibitor complex; HET: YCM 2NC; 1.40A {Synthetic} PDB: 3fsm_A* 3gi0_A* 2o40_A* 3hzc_A* 3hlo_A* 3iaw_A* 3nxe_A* 3nxn_A* 4epj_A 4ep2_A 4ep3_A 4eq0_A 4eqj_A 1hvc_A* 1g6l_A 2whh_A* 1lv1_A* 3dox_A 3kt5_A 3kt2_A ...
Probab=98.78 E-value=6e-08 Score=87.52 Aligned_cols=93 Identities=16% Similarity=0.223 Sum_probs=74.2
Q ss_pred ceeEEeeeecCeeEEEEEcCCccccccCHHHHHHcCCccccCCcc-eeEeecCcceeEEeEEEEEeEEEcCEEEeEEEEE
Q 016931 195 VMLYVDMEVNGIPLKAFVDSGAQSTIISKSCAERCGLLRLLDDRY-RGVAHGVGQSEILGRIHVAPIKIGNVFYPCSFVV 273 (380)
Q Consensus 195 ~~lyv~v~Ing~~v~alVDTGA~~siIs~~~a~rlgL~~~~~~~~-~~~~~gvg~~~~~g~i~~~~i~ig~~~~~~~~~V 273 (380)
.+..+.++|+|+++.||+||||+.|++.. .+|. .++ ..+..|+|......+...+.+++.+......+.|
T Consensus 7 ~RP~vtv~I~Gq~~e~LLDTGAD~TVl~~-----~~lp----g~w~pk~igGIGG~i~vrqy~~i~iei~g~~~~gtvlV 77 (203)
T 3ka2_A 7 KRPLVTIRIGGQLKEALLDTGADDTVIEE-----LNLP----GXWKPKLIGGIAGFIKVRQYDQIPVEIXGHKAIGTVLV 77 (203)
T ss_dssp SCCEEEEEETTEEEEEEECTTCSSCEECS-----CCCS----SCEEEEEEEETTEEEEEEEEEEEEEEETTEEEEEEEEE
T ss_pred CCCeEEEEECCEEEEEEEecCCCceEEec-----ccCC----CCCCceEEEEccCcEEEEEEcceeEEEcCeEEEEEEee
Confidence 46678999999999999999999999983 4442 233 3467788866666666778999999887777777
Q ss_pred ecCCCCceeeeHHHHhhcCeEEEcC
Q 016931 274 LDSPNMEFLFGLDMLRKHQCIIDLK 298 (380)
Q Consensus 274 l~~~~~d~iLG~D~L~~~~~~ID~~ 298 (380)
-+ ...-|||.|+|.+++|.+|+.
T Consensus 78 g~--tPvnIiGRd~LtqlG~tLnf~ 100 (203)
T 3ka2_A 78 GP--TPVNIIGRNLLTQIGXTLNFX 100 (203)
T ss_dssp SC--CSSCEECHHHHTTTTCEEEGG
T ss_pred CC--CCcCccchhhhhhcCceEEec
Confidence 44 345599999999999999998
No 104
>2hah_A Protease, retropepsin; retroviral, aspartyl, hydrolase-hydrolase complex; HET: 3TL; 1.70A {Feline immunodeficiency virus} PDB: 3ogp_A* 3ogq_A* 2fiv_A* 6fiv_A* 3fiv_A* 5fiv_A* 4fiv_A* 1fiv_A* 1b11_A*
Probab=98.64 E-value=5.7e-08 Score=80.31 Aligned_cols=94 Identities=18% Similarity=0.171 Sum_probs=68.1
Q ss_pred ceeEEeeeecCeeEEEEEcCCccccccCHHHHHHcCCccccCCcce-eE-eecCcceeEEeEEEEEeEEEcCEE-----E
Q 016931 195 VMLYVDMEVNGIPLKAFVDSGAQSTIISKSCAERCGLLRLLDDRYR-GV-AHGVGQSEILGRIHVAPIKIGNVF-----Y 267 (380)
Q Consensus 195 ~~lyv~v~Ing~~v~alVDTGA~~siIs~~~a~rlgL~~~~~~~~~-~~-~~gvg~~~~~g~i~~~~i~ig~~~-----~ 267 (380)
.+-++ ++|+|+.+.||+||||..|+|+.....+. +.++. .. ..|+|......+...+.+++.+.. .
T Consensus 13 ~rP~v-ikI~Gq~~eaLLDTGAD~TVi~~~~~~~~------p~~wkpk~~igGiGG~i~v~qy~qv~iei~g~~~~~~~~ 85 (116)
T 2hah_A 13 RPEIL-IFVNGYPIKFLLDTGADITVLNRRDFQVK------NSIENGRQMIGGIGGFIRGTNYINVHLEIRDENYKTQCI 85 (116)
T ss_dssp CCEEE-EEETTEEEEEEECTTCSSCEEEGGGCCCT------TCEEEEEEEEEETTEEEEEEEEEEEEEEECCTTSCCEEE
T ss_pred CCCEE-EEECCEEEEEEecCCCCcEEEcccccccC------CCCCCCceEEecCCCceeeeEEccEEEEEeCCCCCccee
Confidence 36788 99999999999999999999996432111 11222 23 667776544446666788998866 6
Q ss_pred eEEEEEecCCC--CceeeeHHHHhhcCeEEE
Q 016931 268 PCSFVVLDSPN--MEFLFGLDMLRKHQCIID 296 (380)
Q Consensus 268 ~~~~~Vl~~~~--~d~iLG~D~L~~~~~~ID 296 (380)
...+.|.+... . =|+|-|+|.+.+|.+.
T Consensus 86 ~gtvlV~p~tP~~v-niiGRd~Ltqlg~tL~ 115 (116)
T 2hah_A 86 FGNVCVLEDNSTPV-NILGRDNMIKFNIRLV 115 (116)
T ss_dssp EEEEEEETTCCCSS-EEECHHHHTTTTCCCC
T ss_pred EEEEEECCCCCccc-cEecHHHHhHcCCEEe
Confidence 67778888333 4 4999999999999864
No 105
>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1
Probab=98.64 E-value=1e-07 Score=78.70 Aligned_cols=71 Identities=18% Similarity=0.413 Sum_probs=66.7
Q ss_pred EEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCCCcCeEEecCCeecCCcccchhcCCCCCcEEEEeec
Q 016931 2 RITVMTADEQIISLDVDPHETVENVKALLEVETQVPLQQQQLLYNGREMNNAEKLSALGVKDEDLVMMVSN 72 (380)
Q Consensus 2 ~ItVk~~~g~~~~i~V~~~~TV~~LK~~I~~~~gip~~~q~Li~~Gk~L~D~~tL~~~gI~dg~~I~l~~~ 72 (380)
+|+|+..+|+.+.+.|..++++..|+...+.+.|+++..++++|+|+.|.++.|.+++++.+||+|.+...
T Consensus 42 ~LKV~~qdg~ev~fkIk~tt~L~KLm~aY~er~Gl~~~~irFlFDG~rI~~~~TP~dL~MEDgD~IdV~~~ 112 (115)
T 3kyd_D 42 KLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQE 112 (115)
T ss_dssp EEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHTCCTTSEEEEETTEECCTTCCTTTTTCCTTCEEEEEEC
T ss_pred EEEEEcCCCCEEEEEEccCChHHHHHHHHHHHhCCChhhEEEEECCeECCCCCCHHHcCCCCCCEEEEEee
Confidence 57778878888899999999999999999999999999999999999999999999999999999999854
No 106
>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}
Probab=98.54 E-value=6.7e-08 Score=74.85 Aligned_cols=69 Identities=17% Similarity=0.249 Sum_probs=58.0
Q ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCCCcCeEEecCCee---c--CCcccchhcCCCCCcEEEEe
Q 016931 1 MRITVMTADEQIISLDVDPHETVENVKALLEVETQVPLQQQQLLYNGRE---M--NNAEKLSALGVKDEDLVMMV 70 (380)
Q Consensus 1 M~ItVk~~~g~~~~i~V~~~~TV~~LK~~I~~~~gip~~~q~Li~~Gk~---L--~D~~tL~~~gI~dg~~I~l~ 70 (380)
|.|.|++.+| .+.|++++++|+.+|+.+|+++++++++.|.|.++-.+ | .++.+|+++||+.||+|+|.
T Consensus 5 m~lRvrs~~G-~~Ri~v~~~~t~~~L~~~I~~~~~i~~~~~~l~~~~~p~~~l~~~~~~~l~~lgl~hGd~l~l~ 78 (80)
T 2pjh_A 5 IIIRVQSPDG-VKRITATKRETAATFLKKVAKEFGFQNNGFSVYINRNKTGEITASSSKSLHLLKIKHGDLLFLF 78 (80)
T ss_dssp CCCEEECSSE-EEECCCCSSCCHHHHHHHHHHHTCCCTTTCCCCCSCCGGGGSSSCCCCTTTTTCCCTTCCEEC-
T ss_pred EEEEEECCCC-CEEEEcCCcChHHHHHHHHHHHcCCCCCcceEEecCCCCCcccCCCCCCHHHcCCCCCCEEEEe
Confidence 6688888776 56788999999999999999999999999888765443 3 36789999999999999985
No 107
>3pge_A SUMO-modified proliferating cell nuclear antigen; DNA replication, DNA binding protein; 2.80A {Saccharomyces cerevisiae}
Probab=98.38 E-value=8.5e-07 Score=80.07 Aligned_cols=70 Identities=11% Similarity=0.259 Sum_probs=65.5
Q ss_pred EEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCCCcCeEEecCCeecCCcccchhcCCCCCcEEEEeec
Q 016931 2 RITVMTADEQIISLDVDPHETVENVKALLEVETQVPLQQQQLLYNGREMNNAEKLSALGVKDEDLVMMVSN 72 (380)
Q Consensus 2 ~ItVk~~~g~~~~i~V~~~~TV~~LK~~I~~~~gip~~~q~Li~~Gk~L~D~~tL~~~gI~dg~~I~l~~~ 72 (380)
+|+|+. +|+.+.+.|..++++..|+...+.+.|+++.++|++|+|+.|.++.|.+++++.+||+|+++..
T Consensus 31 ~LkV~~-~g~~v~fkIk~~t~l~kL~~ay~er~Gi~~~~~RF~FdG~rI~~~~TP~dL~MEdgD~Idv~~~ 100 (200)
T 3pge_A 31 NLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHRE 100 (200)
T ss_dssp EEEEEC-SSCEEEEEECTTSCTHHHHHHHHHHHSSCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEEC
T ss_pred EEEEec-CCCEEEEEEecCCHHHHHHHHHHHHhCCChhhEEEEECCEEcCCCCCHHHcCCCCCCEEEEEec
Confidence 567764 7888999999999999999999999999999999999999999999999999999999999854
No 108
>3ka2_A [L-Ala51;Gly51']HIV-1 protease; beta-barrel, hydrolase-hydrolase inhibitor complex; HET: YCM 2NC; 1.40A {Synthetic} PDB: 3fsm_A* 3gi0_A* 2o40_A* 3hzc_A* 3hlo_A* 3iaw_A* 3nxe_A* 3nxn_A* 4epj_A 4ep2_A 4ep3_A 4eq0_A 4eqj_A 1hvc_A* 1g6l_A 2whh_A* 1lv1_A* 3dox_A 3kt5_A 3kt2_A ...
Probab=98.32 E-value=5.9e-06 Score=74.50 Aligned_cols=92 Identities=17% Similarity=0.275 Sum_probs=70.1
Q ss_pred ceeEEeeeecCeeEEEEEcCCccccccCHHHHHHcCCccccCCcc-eeEeecCcceeEEeEEEEEeEEEcCEEEeEEEEE
Q 016931 195 VMLYVDMEVNGIPLKAFVDSGAQSTIISKSCAERCGLLRLLDDRY-RGVAHGVGQSEILGRIHVAPIKIGNVFYPCSFVV 273 (380)
Q Consensus 195 ~~lyv~v~Ing~~v~alVDTGA~~siIs~~~a~rlgL~~~~~~~~-~~~~~gvg~~~~~g~i~~~~i~ig~~~~~~~~~V 273 (380)
.+..+.++|+|+.+.||+||||..|+++ ...+ ..++ ..+..|+|...-.-+...+.+++.+......+.|
T Consensus 111 ~rP~~~iki~Gq~~e~LlDTGAD~TVl~-----~~~l----pg~w~pk~igGiGg~i~v~qy~~i~iei~g~~~~~tvlV 181 (203)
T 3ka2_A 111 KRPLVTIRIGGQLKEALLDTGADDTVIE-----ELNL----PGXWKPKLIGGIGGFIKVRQYDQIPVEIXGHKAIGTVLV 181 (203)
T ss_dssp SCCEEEEEETTEEEEEEECTTCSSCEEC-----SCCC----CSCCEEEEEEETTEEEEEEEEEEEEEEETTEEEEEEEEE
T ss_pred CCCcEEEEECCEEEeeeecccCCceeee-----cccC----CCCCCceEEeeccceEEEEEeccEEEEECCeEEEEEEEE
Confidence 3567889999999999999999999996 2333 2233 2366778765444555667889999888777877
Q ss_pred ecCCCCceeeeHHHHhhcCeEEEc
Q 016931 274 LDSPNMEFLFGLDMLRKHQCIIDL 297 (380)
Q Consensus 274 l~~~~~d~iLG~D~L~~~~~~ID~ 297 (380)
-+. .+ =|+|-|.|.+++|.++|
T Consensus 182 gpt-Pv-niiGRn~LtqlG~tl~f 203 (203)
T 3ka2_A 182 GPT-PV-NIIGRNLLTQIGXTLNF 203 (203)
T ss_dssp SCC-SS-CEECHHHHGGGTCEEEC
T ss_pred CCC-Cc-CeechhhHHHhCCeeeC
Confidence 664 33 59999999999999986
No 109
>3tix_A Ubiquitin-like protein SMT3, RNA-induced transcri silencing complex protein TAS3; PIN, rossmann fold, SPOC, alpha-helical hairpin, heterochrom silencing, RITS, RNAI, argonaute; 2.90A {Saccharomyces cerevisiae}
Probab=98.31 E-value=1e-06 Score=78.45 Aligned_cols=70 Identities=13% Similarity=0.267 Sum_probs=65.2
Q ss_pred EEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCCCcCeEEecCCeecCCcccchhcCCCCCcEEEEeec
Q 016931 2 RITVMTADEQIISLDVDPHETVENVKALLEVETQVPLQQQQLLYNGREMNNAEKLSALGVKDEDLVMMVSN 72 (380)
Q Consensus 2 ~ItVk~~~g~~~~i~V~~~~TV~~LK~~I~~~~gip~~~q~Li~~Gk~L~D~~tL~~~gI~dg~~I~l~~~ 72 (380)
.|+|+. +|+.+.+.|..++++..|+...+.+.|+++..++++|+|+.|.++.|.+++++.|||+|+++..
T Consensus 59 nLKVk~-dG~eV~FKIKrtTpL~KLmeAYcERqGL~~~sIRFLFDGqRI~~ddTPeDLdMEDGDtIDV~le 128 (207)
T 3tix_A 59 NLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLTFLYDGIEIQADQTPEDLDMEDNDIIEAHRE 128 (207)
T ss_dssp EEEEEC-SSCEEEEEEETTSCTHHHHHHHHHHTTCCGGGSCEEETTEECCSSCCTTTTTCCTTEEEEECCC
T ss_pred EEEEec-CCCEEEEEEccCChHHHHHHHHHHHhCCCcccEEEEECCeecCCCCCHHHcCCCCCCEEEEEEe
Confidence 466764 7888999999999999999999999999999999999999999999999999999999999864
No 110
>3sqf_A Protease; folded monomer, retropepsin, D-type retrovirus; 1.63A {Mason-pfizer monkey virus} SCOP: b.50.1.1 PDB: 1nso_A
Probab=98.12 E-value=3.1e-06 Score=69.44 Aligned_cols=95 Identities=16% Similarity=0.182 Sum_probs=56.6
Q ss_pred eeEEeeeecCeeEEEEEcCCccccccCHHHHHHcCCccccCCcce-----eEeecCcceeEEeEEEEE-eEE-EcCEEEe
Q 016931 196 MLYVDMEVNGIPLKAFVDSGAQSTIISKSCAERCGLLRLLDDRYR-----GVAHGVGQSEILGRIHVA-PIK-IGNVFYP 268 (380)
Q Consensus 196 ~lyv~v~Ing~~v~alVDTGA~~siIs~~~a~rlgL~~~~~~~~~-----~~~~gvg~~~~~g~i~~~-~i~-ig~~~~~ 268 (380)
+..+.++|+|+.+.||+||||..|+|+.. .+. .++. ....|+|......+.... ..+ +.+....
T Consensus 9 RP~vti~I~Gq~~eaLLDTGADdTVi~~~-----~lp----g~W~p~~~~k~igGIGG~i~v~qy~~~~~~~~i~g~k~i 79 (114)
T 3sqf_A 9 KPSLTLWLDDKMFTGLINTGADVTIIKLE-----DWP----PNWPITDTLTNLRGIGQSNNPKQSSKYLTWRDKENNSGL 79 (114)
T ss_dssp CCEEEEEETTEEEEEEECTTCSSCEEEGG-----GSC----TTSCEEECCCCCTTCCGGGCCEEESSCEEEECTTCCEEE
T ss_pred CCeEEEEECCEEEEEEEccCCCceEEecc-----cCC----CCcccCcCceEEEeccceEEEEEeccceEEEecCCCEEE
Confidence 55788999999999999999999999842 221 1221 244567642212221111 222 5666655
Q ss_pred EEEEEecCCCCceeeeHHHHhhcCeEEEcCCC
Q 016931 269 CSFVVLDSPNMEFLFGLDMLRKHQCIIDLKEN 300 (380)
Q Consensus 269 ~~~~Vl~~~~~d~iLG~D~L~~~~~~ID~~~~ 300 (380)
....|+....++ |+|-|.|.+++|.+++...
T Consensus 80 ~tvlV~~ptPvN-IiGRn~LtqlG~tLnfp~~ 110 (114)
T 3sqf_A 80 IKPFVIPNLPVN-LWGRDLLSQMKIMMASPND 110 (114)
T ss_dssp ECCEEETTCSSC-EECHHHHTTSCC-------
T ss_pred EEEEECCCCccc-EEchhhHhhcCcEEECCCc
Confidence 555676433444 8999999999999988654
No 111
>2rsp_A RSV protease; hydrolase(aspartyl proteinase); 2.00A {Rous sarcoma virus} SCOP: b.50.1.1 PDB: 1mvp_A 1bai_A*
Probab=98.10 E-value=3.7e-06 Score=70.13 Aligned_cols=92 Identities=18% Similarity=0.227 Sum_probs=57.8
Q ss_pred ceeEEeee----------ecCeeEEEEEcCCccccccCHHHHHHcCCccccCCcceeE------eecCcceeEEeEEE-E
Q 016931 195 VMLYVDME----------VNGIPLKAFVDSGAQSTIISKSCAERCGLLRLLDDRYRGV------AHGVGQSEILGRIH-V 257 (380)
Q Consensus 195 ~~lyv~v~----------Ing~~v~alVDTGA~~siIs~~~a~rlgL~~~~~~~~~~~------~~gvg~~~~~g~i~-~ 257 (380)
.+-.+.++ |+|+.+.||+||||..|+++.. .+ ..++..+ ..|+|...-..+.. .
T Consensus 9 ~rP~v~v~~~~~~~~p~~i~gq~~eaLLDTGAD~TVl~~~-----~l----P~~W~k~~~~~~~igGIGG~i~v~qy~~~ 79 (124)
T 2rsp_A 9 DRPLVRVILTNTGSHPVKQRSVYITALLDSGADITIISEE-----DW----PTDWPVMEAANPQIHGIGGGIPMRKSRDM 79 (124)
T ss_dssp SCCEEEEEEEECCSSCCSCSEEEEEEEECTTCSSCEEETT-----TS----CTTSCEEECC---------CCCEEEESSC
T ss_pred hCCeEEEEeccCCCCcccCCCEEEEEEecCCCCcEEEecc-----cC----CCcceeeccccceeeecCceEeeEEeCCc
Confidence 45566677 9999999999999999999842 22 1233322 55666532233344 4
Q ss_pred EeEEEcCE--EEeEEEEEecC---CCCceeeeHHHHhhcCeEEE
Q 016931 258 APIKIGNV--FYPCSFVVLDS---PNMEFLFGLDMLRKHQCIID 296 (380)
Q Consensus 258 ~~i~ig~~--~~~~~~~Vl~~---~~~d~iLG~D~L~~~~~~ID 296 (380)
..+++.+. .....+.|.+. ... -|+|-|.|.+.+|.+.
T Consensus 80 i~iei~g~~g~~~~tvlV~P~~~~tPv-nIiGRdlLtqlG~tL~ 122 (124)
T 2rsp_A 80 IELGVINRDGSLERPLLLFPAVAMVRG-SILGRDCLQGLGLRLT 122 (124)
T ss_dssp EEEEEECTTSCBCCCEEECCEEESCSS-EEECHHHHHHTTCEEE
T ss_pred eEEEEeCCCCcEEEEEEECcCCCCCce-eEECHhHHhhCCcEEe
Confidence 56777665 45556667663 222 4999999999999974
No 112
>3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A*
Probab=98.09 E-value=1.7e-05 Score=60.28 Aligned_cols=67 Identities=16% Similarity=0.304 Sum_probs=60.4
Q ss_pred EEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCCCc-CeEEecCCeecCCcccchhcCCCCCcEEEEe
Q 016931 4 TVMTADEQIISLDVDPHETVENVKALLEVETQVPLQ-QQQLLYNGREMNNAEKLSALGVKDEDLVMMV 70 (380)
Q Consensus 4 tVk~~~g~~~~i~V~~~~TV~~LK~~I~~~~gip~~-~q~Li~~Gk~L~D~~tL~~~gI~dg~~I~l~ 70 (380)
.++.....-+.+.|.++++|.+|-+.-..+.|||++ ..+|.|.|..|..+.++.+|++.|||.|-++
T Consensus 13 ~~~~~~~~dl~f~I~~~t~v~kLi~ayc~~~~I~~~~~IrllFDGdRLdp~~tp~DlemeD~D~IDvm 80 (82)
T 3goe_A 13 LLRSSKSEDLRLSIPVDFTVKDLIKRYCTEVKISFHERIRLEFEGEWLDPNDQVQSTELEDEDQVSVV 80 (82)
T ss_dssp EEEESSSCCEEEEEETTSBHHHHHHHHHHHHTCCCCTTCEEEETTEECCTTSBGGGSSCCTTCEEEEE
T ss_pred hhhccCCCCeEEEecCCCCHHHHHHHHHHHcCCCcCceEEEEEcCcccCccCChhhhCCcCCceeeee
Confidence 345555555789999999999999999999999999 8999999999999999999999999999876
No 113
>3v7o_A Minor nucleoprotein VP30; ssgcid, seattle structural genomics center for infectious disease, SMT, transcription; 2.25A {Reston ebolavirus}
Probab=98.03 E-value=6.5e-07 Score=80.70 Aligned_cols=71 Identities=11% Similarity=0.280 Sum_probs=0.0
Q ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCCCcCeEEecCCeecCCcccchhcCCCCCcEEEEeec
Q 016931 1 MRITVMTADEQIISLDVDPHETVENVKALLEVETQVPLQQQQLLYNGREMNNAEKLSALGVKDEDLVMMVSN 72 (380)
Q Consensus 1 M~ItVk~~~g~~~~i~V~~~~TV~~LK~~I~~~~gip~~~q~Li~~Gk~L~D~~tL~~~gI~dg~~I~l~~~ 72 (380)
|.|+| ..+|+.+.+.|..++++..|++..+++.|++++.++++|+|+.|.++.|.++++++|||+|+++..
T Consensus 22 InLKV-~qdGseV~FKIKrtTpL~KLM~AYcERqGLs~~siRFLFDGqRI~dddTPadL~MEDGDtIDV~le 92 (227)
T 3v7o_A 22 INLKV-SDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHRE 92 (227)
T ss_dssp ------------------------------------------------------------------------
T ss_pred EEEEE-eCCCCEEEEEEccCChHHHHHHHHHHHhCCCccceEEEECCEecCCCCCHHHcCCCCCCEEEEEec
Confidence 45677 557888889999999999999999999999999999999999999999999999999999999854
No 114
>2jxx_A Nfatc2-interacting protein; nuclear factor of activated T-cells, cytoplasmic 2- interacting protein, ubiquitin like homologue; NMR {Homo sapiens}
Probab=98.02 E-value=2.2e-05 Score=62.77 Aligned_cols=69 Identities=12% Similarity=0.310 Sum_probs=63.1
Q ss_pred EEEEEeCCCC-EEEEEeCCCCCHHHHHHHHHHHhCCCCcCeEEecCCeecCCcccchhcCCCCCcEEEEe
Q 016931 2 RITVMTADEQ-IISLDVDPHETVENVKALLEVETQVPLQQQQLLYNGREMNNAEKLSALGVKDEDLVMMV 70 (380)
Q Consensus 2 ~ItVk~~~g~-~~~i~V~~~~TV~~LK~~I~~~~gip~~~q~Li~~Gk~L~D~~tL~~~gI~dg~~I~l~ 70 (380)
.|+|+..+|+ .+.+.|..++++..|....+.+.|+++...+++|+|..|..+.|.+++++.+||+|.+.
T Consensus 27 ~LkV~~~dg~~~v~fkIk~~t~l~kLm~aY~~~~g~~~~~vrF~FDG~rI~~~~TP~dLdMEDgD~IDv~ 96 (97)
T 2jxx_A 27 QLRVQGKEKHQTLEVSLSRDSPLKTLMSHYEEAMGLSGRKLSFFFDGTKLSGRELPADLGMESGDLIEVW 96 (97)
T ss_dssp EEEEEESSSSCEEEEEEETTSCHHHHHHHHHHHTTCSSSCCEEEETTEECCSCSCHHHHTCCTTEEEEEE
T ss_pred EEEEEcCCCCEEEEEEECCCChHHHHHHHHHHHHCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEe
Confidence 4666777774 78899999999999999999999999999999999999999999999999999999875
No 115
>4efo_A Serine/threonine-protein kinase TBK1; ubiquitin like domain, transferase; 1.77A {Homo sapiens}
Probab=97.84 E-value=4.1e-05 Score=60.70 Aligned_cols=63 Identities=17% Similarity=0.269 Sum_probs=48.6
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHhCCCCcCeEEecCCeecC--CcccchhcCCC-CCcEEEEee
Q 016931 9 DEQIISLDVDPHETVENVKALLEVETQVPLQQQQLLYNGREMN--NAEKLSALGVK-DEDLVMMVS 71 (380)
Q Consensus 9 ~g~~~~i~V~~~~TV~~LK~~I~~~~gip~~~q~Li~~Gk~L~--D~~tL~~~gI~-dg~~I~l~~ 71 (380)
.+..+.+.+.++.|+..||++|++++|||+++|+|+|.|+.|. .+..-..|--. ...-|.|..
T Consensus 22 ~a~~h~v~I~~~etv~~~ke~V~eqTgIp~~~Q~LL~eg~~l~l~p~~~a~~~p~Tt~~~Pl~L~s 87 (94)
T 4efo_A 22 QMTAHKIYIHSYNTATIFHELVYKQTKIISSNQELIYEGRRLVLEPGRLAQHFPKTTEENPIFVVS 87 (94)
T ss_dssp TTEEEEEEEETTCBHHHHHHHHHHHHCCCGGGEEEEETTEEECCCTTCBGGGSCCCBTTBCEEEEE
T ss_pred cceEEEEEeccchHHHHHHHHHHHHhCCCHHHHHHHhCCCccccCCCCccccCCCCCCCCCEEEEe
Confidence 4778999999999999999999999999999999999998765 33444455432 233445443
No 116
>2kc2_A Talin-1, F1; FERM, adhesion, cell membrane, cell projection, cytoplasm, cytoskeleton, membrane, phosphoprotein, structural protein; NMR {Mus musculus}
Probab=97.74 E-value=5.6e-05 Score=63.32 Aligned_cols=71 Identities=14% Similarity=0.243 Sum_probs=59.9
Q ss_pred EEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCCCc-------------------------------------CeEEe
Q 016931 2 RITVMTADEQIISLDVDPHETVENVKALLEVETQVPLQ-------------------------------------QQQLL 44 (380)
Q Consensus 2 ~ItVk~~~g~~~~i~V~~~~TV~~LK~~I~~~~gip~~-------------------------------------~q~Li 44 (380)
.|+|+.++|...++.|+.+.+|.+++..|+.+.||+.. .++|-
T Consensus 13 ~LkV~llDg~~ktl~VD~S~~V~~lv~~Ic~kigI~n~~ey~L~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~k~kL~ 92 (128)
T 2kc2_A 13 PLKIRMLDGTVKTIMVDDSKTVTDMLMTICARIGITNHDEYSLVRELMEEKKDEGTGTLRKDKTLLRDEKKMEKLKQKLH 92 (128)
T ss_dssp EEEEECTTSCEEEEEEEECSSHHHHHHHHHHHHTCCCCSSEEEEEECCCCCCCCCSSCCSSSSSCSCCSCCSCSSCCSCC
T ss_pred cEEEEcCCCCEEEEEeCCCcCHHHHHHHHHHHhCCCCcccccccccccccccccCchhhccccccccchhHHHHHHHHhc
Confidence 37899999999999999999999999999999999854 34442
Q ss_pred c--CCeecCCcccchhcCCCCCcEEEEeec
Q 016931 45 Y--NGREMNNAEKLSALGVKDEDLVMMVSN 72 (380)
Q Consensus 45 ~--~Gk~L~D~~tL~~~gI~dg~~I~l~~~ 72 (380)
. .+..|++++||.++||.++++|.|..+
T Consensus 93 ~dd~~~WLD~srtL~EQGI~e~~tllLRrK 122 (128)
T 2kc2_A 93 TDDELNWLDHGRTLREQGVEEHETLLLRRK 122 (128)
T ss_dssp CSSSEEEECSSSCHHHHTCCTTSEEEEEES
T ss_pred ccCCCCcccCCCcHHHcCCCCCCEEEEEEE
Confidence 1 125677889999999999999998765
No 117
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2
Probab=97.72 E-value=0.00015 Score=56.83 Aligned_cols=73 Identities=10% Similarity=0.110 Sum_probs=68.9
Q ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCCCcCeEEecCCeecCCcccchhcCCCCCcEEEEeecC
Q 016931 1 MRITVMTADEQIISLDVDPHETVENVKALLEVETQVPLQQQQLLYNGREMNNAEKLSALGVKDEDLVMMVSNA 73 (380)
Q Consensus 1 M~ItVk~~~g~~~~i~V~~~~TV~~LK~~I~~~~gip~~~q~Li~~Gk~L~D~~tL~~~gI~dg~~I~l~~~~ 73 (380)
|.|+|-..+++...+.|.+++++.++-+....++|+.+++..|.|++|.|+-+.++.-.|+.+|..+.++...
T Consensus 10 m~v~Vl~~n~rr~~VKvtp~t~L~~VL~eaC~K~gl~~~~~~Lkh~~k~lDLSlpfRlsgLpnnAkLELv~~s 82 (90)
T 2al3_A 10 SAVSVLAPNGRRHTVKVTPSTVLLQVLEDTCRRQDFNPSEYDLKFQRTVLDLSLQWRFANLPNNAKLEMVPVS 82 (90)
T ss_dssp CCEEEECTTSCEEEECCCTTSBHHHHHHHHHHHTTCCGGGCEEEETTEEESSSCBHHHHCCCSSCEEEEECSS
T ss_pred cEEEEEcCCCcEEEEEECCCCCHHHHHHHHHHHhCCChhhCeEEeCCEeccccceeEecCCCCCCEEEEEEcc
Confidence 6789999999999999999999999999999999999999999999999998999999999999999999754
No 118
>2bps_A YUKD protein; ubiquitin-like protein, ubiquitin; 2.7A {Bacillus subtilis}
Probab=97.63 E-value=0.00013 Score=56.19 Aligned_cols=68 Identities=16% Similarity=0.235 Sum_probs=57.6
Q ss_pred EEEEEeC--CCCEEEEEeCCCCCHHHHHHHHHHHhCCCCc-----CeEEecCCeecCCcccchhcCCCCCcEEEE
Q 016931 2 RITVMTA--DEQIISLDVDPHETVENVKALLEVETQVPLQ-----QQQLLYNGREMNNAEKLSALGVKDEDLVMM 69 (380)
Q Consensus 2 ~ItVk~~--~g~~~~i~V~~~~TV~~LK~~I~~~~gip~~-----~q~Li~~Gk~L~D~~tL~~~gI~dg~~I~l 69 (380)
+||+... .++.+.++++...|+..|+..+.+.++++.. +.++.-++..|.++++|++|+|.+||.|.+
T Consensus 6 ~ITidl~~y~~~~~DLRIP~~~tvK~Li~~l~ea~~l~~~~~~~~~irv~NK~~~L~~~~~L~d~~ItnGD~Lei 80 (81)
T 2bps_A 6 DITIDLKHYNGSVFDLRLSDYHPVKKVIDIAWQAQSVSMPPREGHWIRVVNKDKVFSGECKLSDCGITNGDRLEI 80 (81)
T ss_dssp EEEEECTTTTCCEEEEEEETTSBTTHHHHHHHHHSCCCSCCCTTCEEEEGGGTEEEETTSBTGGGTCCTTCEEEE
T ss_pred EEEEEeeccCCceEEEECCCchhHHHHHHHHHHHhCCCcCCCCCCEEEEecCCEEEcCCCEEeeCCcCCCCEEEE
Confidence 4566643 5889999999999999999999999987652 346667889999999999999999999875
No 119
>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 4giv_A* 1euv_B 3v60_A 3v61_A 3v62_A*
Probab=97.50 E-value=0.00024 Score=64.58 Aligned_cols=70 Identities=11% Similarity=0.259 Sum_probs=64.4
Q ss_pred EEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCCCcCeEEecCCeecCCcccchhcCCCCCcEEEEeec
Q 016931 2 RITVMTADEQIISLDVDPHETVENVKALLEVETQVPLQQQQLLYNGREMNNAEKLSALGVKDEDLVMMVSN 72 (380)
Q Consensus 2 ~ItVk~~~g~~~~i~V~~~~TV~~LK~~I~~~~gip~~~q~Li~~Gk~L~D~~tL~~~gI~dg~~I~l~~~ 72 (380)
.|+|++ +++.+.+.+..++++..|+...+++.|+++++++++|+|+.+.+++|-.++.+.++|+|.+...
T Consensus 23 ~ikv~~-~~~~v~~~i~~~~~l~kl~~~y~~~~g~~~~~~~f~fdG~~i~~~~Tpk~L~~ed~d~I~~~~e 92 (209)
T 3uf8_A 23 NLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHRE 92 (209)
T ss_dssp EEEEEC-SSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGCEEEETTEECCTTCCTTTTTCCTTEEEEEECS
T ss_pred EEEEEc-CCCEEEEEEeeCCHHHHHHHHHHHhhCCChheEEEEECCEeccCCCChHHhhhcccccchhhcc
Confidence 466666 6677889999999999999999999999999999999999999999999999999999999864
No 120
>2l76_A Nfatc2-interacting protein; ubiquitin-like domain, structural genomics, PSI-biology, Pro structure initiative; NMR {Homo sapiens}
Probab=97.44 E-value=0.00072 Score=53.44 Aligned_cols=70 Identities=14% Similarity=0.212 Sum_probs=64.3
Q ss_pred EEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCCCcCeEEecCCeecCCcccchhcCCCCCcEEEEeec
Q 016931 2 RITVMTADEQIISLDVDPHETVENVKALLEVETQVPLQQQQLLYNGREMNNAEKLSALGVKDEDLVMMVSN 72 (380)
Q Consensus 2 ~ItVk~~~g~~~~i~V~~~~TV~~LK~~I~~~~gip~~~q~Li~~Gk~L~D~~tL~~~gI~dg~~I~l~~~ 72 (380)
.|+|+. +|....+.+..++.+..|....+.+.|++++..+++|+|..+.++.|-.++++.+||+|-++.-
T Consensus 23 niKV~~-~g~ev~FkIK~tt~l~KL~~aYc~r~gv~~~sirFlfDG~rI~~~~TP~~L~meD~DiID~~~~ 92 (95)
T 2l76_A 23 PLKIRC-RADLVRLPLRMSEPLQSVVDHMATHLGVSPSRILLLFGETELSPTATPRTLKLGVADIIDCVVL 92 (95)
T ss_dssp EEEEEC-SSSEEEEEECSSSCTHHHHHHHHHHHTSCGGGEEEEETTEECCTTSCHHHHTCCSSCEEEEEEC
T ss_pred EEEEEc-CCcEEEEEEecCChHHHHHHHHHhhcCCChhhEEEEECCcCCCCCCCHhHcCCCCCCEEEEEEe
Confidence 567775 6788889999999999999999999999999999999999999999999999999999988754
No 121
>3ix6_A TS, tsase, thymidylate synthase; niaid, ssgcid, seattle structural center for infectious DISE brucellosis, orchitis, epididymitis, mastitis; 2.20A {Brucella melitensis}
Probab=97.32 E-value=3.2e-05 Score=75.55 Aligned_cols=69 Identities=12% Similarity=0.259 Sum_probs=0.0
Q ss_pred EEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCCCcCeEEecCCeecCCcccchhcCCCCCcEEEEee
Q 016931 2 RITVMTADEQIISLDVDPHETVENVKALLEVETQVPLQQQQLLYNGREMNNAEKLSALGVKDEDLVMMVS 71 (380)
Q Consensus 2 ~ItVk~~~g~~~~i~V~~~~TV~~LK~~I~~~~gip~~~q~Li~~Gk~L~D~~tL~~~gI~dg~~I~l~~ 71 (380)
.|+|+. +|+.+.+.|..++++..|+...+++.|++++.++++|+|+.|.++.|.++++++|||+|.+..
T Consensus 23 ~LKV~~-~g~~v~FkIk~~t~l~kLm~aY~~r~G~~~~~~rFlFdG~rI~~~~TP~~L~MEDgD~Idv~~ 91 (360)
T 3ix6_A 23 NLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHR 91 (360)
T ss_dssp ----------------------------------------------------------------------
T ss_pred EEEEec-CCcEEEEEEecCChHHHHHHHHHHHhCCCcceEEEEECCeECCCCCChHHcCCCccchhhhhh
Confidence 456665 567788999999999999999999999999999999999999999999999999999999984
No 122
>2pma_A Uncharacterized protein; APC86035.2, protein LPG0085, DUF785, legionella pneumophila pneumophila STR. philadelphia 1; 1.89A {Legionella pneumophila subsp} SCOP: b.50.1.3
Probab=97.12 E-value=0.00085 Score=57.40 Aligned_cols=108 Identities=15% Similarity=0.132 Sum_probs=68.6
Q ss_pred ccccceeEEeeeecCeeEEEEEcCCccccccCHHHHHHc---C-------C---------ccccCCcceeEeecCcce--
Q 016931 191 FARVVMLYVDMEVNGIPLKAFVDSGAQSTIISKSCAERC---G-------L---------LRLLDDRYRGVAHGVGQS-- 249 (380)
Q Consensus 191 f~~~~~lyv~v~Ing~~v~alVDTGA~~siIs~~~a~rl---g-------L---------~~~~~~~~~~~~~gvg~~-- 249 (380)
++..-.++++-. |.+++|=|||||..|-|+..-.+.. | + ...+- +...+....|..
T Consensus 5 iG~~E~v~lp~l--g~~~~AKiDTGA~TSSLhA~dI~~Ferdg~~wVrF~~~~~~~~~~~e~pv~-~~~~Ik~s~g~~~~ 81 (146)
T 2pma_A 5 YGYVEKATLIDQ--NLTLSAKLDTGAKSASLHAVNITEIEKKGIPYLRFTVPTKTGDYSFEGEYV-GKVKIKVRSSETNP 81 (146)
T ss_dssp EESEEEEEEGGG--TEEEEEEECTTCSSEEEECEEEEEEEETTEEEEEEEEEETTEEEEEEEEEE-EEEEC---------
T ss_pred EeeeEEEEECCC--CCEEEEEecCCcCcceecceeEEEeeeCCCcEEEEEEecCCCCceEEEEeE-EEEEEecCCCcccc
Confidence 344444555443 7789999999999999987655432 1 1 00000 111111111220
Q ss_pred ------eEEeEEEEEeEEEcCEEEeEEEEEecC--CCCceeeeHHHHhhcCeEEEcCCCE
Q 016931 250 ------EILGRIHVAPIKIGNVFYPCSFVVLDS--PNMEFLFGLDMLRKHQCIIDLKENV 301 (380)
Q Consensus 250 ------~~~g~i~~~~i~ig~~~~~~~~~Vl~~--~~~d~iLG~D~L~~~~~~ID~~~~~ 301 (380)
...-.+-...|+||+..+++.|..-+. ..+.+|||-+||+..++.+|....-
T Consensus 82 ~~~~~~~e~R~VV~~~i~lG~~~~~ie~tLtdRs~m~ypmLLGR~~L~~~~~lVD~s~~~ 141 (146)
T 2pma_A 82 GLLRTTPIKRPVVLLNIKLGDKVRTIKVNLTNRKRFLYPLLLGRDAIIDFNGAVDPALTF 141 (146)
T ss_dssp ------CCEEEEEEEEEEETTEEEEEEEEEECCCCCSCSEEECHHHHHHTTEEEETTCCC
T ss_pred ccccCCcccccEEEEEEEECCEEEEEEEEEcCCCcCCCCEEechhHHhhCCEEECCchhc
Confidence 122234445899999999999999994 4689999999999999999987653
No 123
>3qx1_A FAS-associated factor 1; UBX, protein binding, P97 binding; 1.60A {Homo sapiens} PDB: 3qwz_B* 3qc8_B 3qca_A 3qq8_B 3r3m_B 1h8c_A
Probab=97.10 E-value=0.0024 Score=49.21 Aligned_cols=69 Identities=10% Similarity=0.263 Sum_probs=59.3
Q ss_pred EEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCCCcCeEEe--cCCeecC--C-cccchhcCCCCCcEEEEee
Q 016931 2 RITVMTADEQIISLDVDPHETVENVKALLEVETQVPLQQQQLL--YNGREMN--N-AEKLSALGVKDEDLVMMVS 71 (380)
Q Consensus 2 ~ItVk~~~g~~~~i~V~~~~TV~~LK~~I~~~~gip~~~q~Li--~~Gk~L~--D-~~tL~~~gI~dg~~I~l~~ 71 (380)
+|-|+.++|+.+.-.+..+.||.+|...|.. .+.++....|+ |-.|.|. | ++||.++|+.++.+|+|-.
T Consensus 9 ~i~iRlpdG~r~~~~F~~~~tl~~v~~fv~~-~~~~~~~f~L~t~fPrk~l~~~d~~~TL~e~gL~p~a~L~ve~ 82 (84)
T 3qx1_A 9 KLRIRTPSGEFLERRFLASNKLQIVFDFVAS-KGFPWDEYKLLSTFPRRDVTQLDPNKSLLEVKLFPQETLFLEA 82 (84)
T ss_dssp EEEEECTTSCEEEEEEETTSBHHHHHHHHHH-TTCCTTTEEEECSSSCCBGGGSCTTSBTTTTTCCSEEEEEEEE
T ss_pred EEEEECCCCCEEEEEeCCCCCHHHHHHHHHH-cCCCCCCeEEEeCCCCCCCcCCCCCCCHHHCCCCCCCEEEEEe
Confidence 5778999999888889999999999999998 67778888888 5678884 3 5899999999999999864
No 124
>3liy_A Protease; hydrolase, hydrolase-hydrolase inhibitor complex; HET: STA; 1.86A {Human t-lymphotropic virus 1} PDB: 2b7f_A* 3liq_A* 3lit_A* 3liv_A* 3lix_A* 3lin_A*
Probab=97.04 E-value=0.00097 Score=54.36 Aligned_cols=93 Identities=20% Similarity=0.204 Sum_probs=58.6
Q ss_pred eeEEeeeec-----CeeEEEEEcCCccccccCHHHHHHcCCccccCCccee----EeecCcceeEEeEEEEEeEEEcC--
Q 016931 196 MLYVDMEVN-----GIPLKAFVDSGAQSTIISKSCAERCGLLRLLDDRYRG----VAHGVGQSEILGRIHVAPIKIGN-- 264 (380)
Q Consensus 196 ~lyv~v~In-----g~~v~alVDTGA~~siIs~~~a~rlgL~~~~~~~~~~----~~~gvg~~~~~g~i~~~~i~ig~-- 264 (380)
+-.+.++|+ |+.+.||+||||..|+|... .+. .++.- +..|+|.....-+....++.+-.
T Consensus 10 RPlvtikI~~~~~~Gq~~eaLLDTGADdTVl~~~-----~lP----g~Wkp~~tkiiGGiGg~~~~~qs~~~pv~i~lpf 80 (116)
T 3liy_A 10 RPVIKAQVDTQTSHPKTIEALLDTGADMTVIPIA-----LFS----SNTPLKNTSVLGAGGQTQDHFKLTSLPVLIRLPF 80 (116)
T ss_dssp CCEEEEEEECSSSCCEEEEEEECTTBSSCEEEGG-----GSC----TTCCEEECCEEETTEEESSSEEEESSCEEEECTT
T ss_pred CCeEEEEEccccCCCeEeEEEeccCCCccEEecc-----cCC----CCCcccccceEeecccceeeeEecCCCeEEEecc
Confidence 567889999 99999999999999999742 332 22322 56666643333344444555533
Q ss_pred --EEEeEEEEEecCCCCceeeeHHHHhhcCeEEEc
Q 016931 265 --VFYPCSFVVLDSPNMEFLFGLDMLRKHQCIIDL 297 (380)
Q Consensus 265 --~~~~~~~~Vl~~~~~d~iLG~D~L~~~~~~ID~ 297 (380)
.....+...++..+.=-|||-|.|.+.+..+-+
T Consensus 81 r~~pv~l~~~lv~~~~~w~iigRd~l~q~q~~l~l 115 (116)
T 3liy_A 81 RTTPIVLTSCLVDTKNNWAIIGRDALQQCQGVLYL 115 (116)
T ss_dssp CCSCEEESSCEEETTSCCCEECHHHHHHTTCEEEC
T ss_pred CCcceeeceEEEcCCCceeEechhHHhhhccEEec
Confidence 222222333444334469999999999877643
No 125
>4da1_A Protein phosphatase 1K, mitochondrial; metal-ION-assisted catalysis, dehydrogenase phosphatase, hydrolase; 2.38A {Homo sapiens} PDB: 3qht_A 1l2n_A
Probab=96.96 E-value=0.00012 Score=72.48 Aligned_cols=69 Identities=12% Similarity=0.259 Sum_probs=0.0
Q ss_pred EEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCCCcCeEEecCCeecCCcccchhcCCCCCcEEEEeec
Q 016931 3 ITVMTADEQIISLDVDPHETVENVKALLEVETQVPLQQQQLLYNGREMNNAEKLSALGVKDEDLVMMVSN 72 (380)
Q Consensus 3 ItVk~~~g~~~~i~V~~~~TV~~LK~~I~~~~gip~~~q~Li~~Gk~L~D~~tL~~~gI~dg~~I~l~~~ 72 (380)
|+|+. ++..+.+.|..++++..|+...+++.|+++.+++++|+|+.|.++.|-+++++++||+|.+...
T Consensus 33 lkv~~-~~~~~~~~i~~~~~~~~l~~~y~~~~g~~~~~~~f~f~G~~i~~~~Tp~~l~med~d~i~~~~~ 101 (389)
T 4da1_A 33 LKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQAPEDLDMEDNDIIEAHRE 101 (389)
T ss_dssp ----------------------------------------------------------------------
T ss_pred EEEec-CCcEEEEEECCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCHHHcCCCCCCEeeeeec
Confidence 45555 5666779999999999999999999999999999999999999999999999999999999854
No 126
>2dzk_A UBX domain-containing protein 2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} PDB: 2kxj_A
Probab=96.82 E-value=0.011 Score=47.94 Aligned_cols=72 Identities=14% Similarity=0.216 Sum_probs=62.2
Q ss_pred EEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCCCcCeEEe--cCCeecC--C-cccchhcCCCCCcEEEEeecC
Q 016931 2 RITVMTADEQIISLDVDPHETVENVKALLEVETQVPLQQQQLL--YNGREMN--N-AEKLSALGVKDEDLVMMVSNA 73 (380)
Q Consensus 2 ~ItVk~~~g~~~~i~V~~~~TV~~LK~~I~~~~gip~~~q~Li--~~Gk~L~--D-~~tL~~~gI~dg~~I~l~~~~ 73 (380)
+|.|+.++|+.+.-.+..+.||.+|...|....+.+.....|+ |-.|.+. | ++||.++|+.+..+|++....
T Consensus 15 ~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~~~~~~~f~L~t~fPrk~l~~~d~~~TL~elgL~psa~L~v~~~~ 91 (109)
T 2dzk_A 15 RIQFRLPDGSSFTNQFPSDAPLEEARQFAAQTVGNTYGNFSLATMFPRREFTREDYKRRLLDLELAPSASVVLLPAG 91 (109)
T ss_dssp EEEEECSSSCEEEEEECTTSBHHHHHHHHHHHHTTSSCSCEEECSSSCCBCCTTTTTSBTGGGTCSSEEEEEEECCS
T ss_pred EEEEECCCCCEEEEEeCCCCCHHHHHHHHHhccCCCCCceEEEcCCCCcCCcccccCCCHHHCCCCCceEEEEEECc
Confidence 5788999999999999999999999999999988877777777 6778887 3 589999999999999888643
No 127
>1wj4_A KIAA0794 protein; UBX domain, beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.2
Probab=96.33 E-value=0.012 Score=48.90 Aligned_cols=70 Identities=11% Similarity=0.220 Sum_probs=60.3
Q ss_pred EEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCCCcCeEEe--cCCeec--CC-cccchhcCCCCCcEEEEeec
Q 016931 2 RITVMTADEQIISLDVDPHETVENVKALLEVETQVPLQQQQLL--YNGREM--NN-AEKLSALGVKDEDLVMMVSN 72 (380)
Q Consensus 2 ~ItVk~~~g~~~~i~V~~~~TV~~LK~~I~~~~gip~~~q~Li--~~Gk~L--~D-~~tL~~~gI~dg~~I~l~~~ 72 (380)
+|.|+.++|..+.-.+..+.||.+|...|... +.++....|+ |-.|.| .| ++||.++|+.+..+|+|...
T Consensus 45 ~IqIRlPdG~rl~~rF~~~~tl~~V~~fV~~~-~~~~~~F~L~t~fPrk~l~~~d~~~TL~e~gL~psa~Liv~~~ 119 (124)
T 1wj4_A 45 QLMLRYPDGKREQITLPEQAKLLALVKHVQSK-GYPNERFELLTNFPRRKLSHLDYDITLQEAGLCPQETVFVQES 119 (124)
T ss_dssp EEEEECTTSCEEEEEEETTSCHHHHHHHHHHH-HCCTTTEEEECSSSCCEETSSCSSSCTTTTTCCSSBCCEEEEC
T ss_pred EEEEECCCCCEEEEEeCCCCCHHHHHHHHHhc-CCCCCCeEEecCCCCcCCccCCCCCCHHHCCCCCceEEEEEEc
Confidence 57889999999888999999999999999987 7777788887 668888 34 58999999999999888754
No 128
>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}
Probab=96.10 E-value=0.021 Score=42.94 Aligned_cols=62 Identities=19% Similarity=0.276 Sum_probs=50.5
Q ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCCCcCeEEecCCeecCCcccchhcCCCCCcEEEEeec
Q 016931 1 MRITVMTADEQIISLDVDPHETVENVKALLEVETQVPLQQQQLLYNGREMNNAEKLSALGVKDEDLVMMVSN 72 (380)
Q Consensus 1 M~ItVk~~~g~~~~i~V~~~~TV~~LK~~I~~~~gip~~~q~Li~~Gk~L~D~~tL~~~gI~dg~~I~l~~~ 72 (380)
|+|+|+........++++...||.+|-+. .|+|++.-.+..||+.+..+. +.+||.|-++.-
T Consensus 1 M~v~Vkl~g~~~~~~ev~~g~Tv~dLL~~----Lgl~~~~VvV~vNG~~v~~d~------~l~GD~VeIv~~ 62 (74)
T 2l32_A 1 MNVTVEVVGEETSEVAVDDDGTYADLVRA----VDLSPHEVTVLVDGRPVPEDQ------SVEVDRVKVLRL 62 (74)
T ss_dssp CEEEEECSSSSEEEEECSTTCSHHHHHHT----TCCCSSCCCEECCCCCCCTTS------SSCCCCEEECSS
T ss_pred CEEEEEEeCccceeEEcCCCCcHHHHHHH----cCCCcceEEEEECCEECCHHH------CCCCCEEEEEEe
Confidence 99999987555566899999999998765 899999988888999887555 345999988753
No 129
>2cr5_A Reproduction 8; UBX domain, D0H8S2298E protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.2
Probab=95.54 E-value=0.078 Score=42.76 Aligned_cols=70 Identities=6% Similarity=0.105 Sum_probs=58.5
Q ss_pred EEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCCCcCeEEe--cCCeecC-C-cccchhcCCCCCcEEEEeec
Q 016931 2 RITVMTADEQIISLDVDPHETVENVKALLEVETQVPLQQQQLL--YNGREMN-N-AEKLSALGVKDEDLVMMVSN 72 (380)
Q Consensus 2 ~ItVk~~~g~~~~i~V~~~~TV~~LK~~I~~~~gip~~~q~Li--~~Gk~L~-D-~~tL~~~gI~dg~~I~l~~~ 72 (380)
+|-|+..+|+.+.-.+..+.||.+|...|..+ +..+....|+ |-.|.|. | ++||+++|+.+..+|+|...
T Consensus 25 ~IqiRlpdG~r~~rrF~~~~tl~~v~~fv~~~-~~~~~~f~L~t~fPrk~l~~d~~~TL~e~gL~p~a~L~Ve~~ 98 (109)
T 2cr5_A 25 TVALRCPNGRVLRRRFFKSWNSQVLLDWMMKV-GYHKSLYRLSTSFPRRALEVEGGSSLEDIGITVDTVLNVEEK 98 (109)
T ss_dssp EEEEECTTSCEEEEEEESSSBTHHHHHHHHHH-TCCTTTEEEECSSSCCBCCCCSSCBHHHHTCSSCEEEEEEEC
T ss_pred EEEEECCCCCEEEEEeCCCCCHHHHHHHHHhc-CCCCCCeEEEeCCCCcCCCCCCCCCHHHcCCCCCeEEEEEeC
Confidence 57789999998888899999999999999966 4556677776 6678886 3 58999999999999988764
No 130
>2jys_A Protease/reverse transcriptase; retroviral protease, hydrolase; NMR {Simian foamy virus type 1}
Probab=95.35 E-value=0.04 Score=43.08 Aligned_cols=68 Identities=24% Similarity=0.276 Sum_probs=44.9
Q ss_pred EeeeecCeeEEEEEcCCccccccCHHHHHHcCCccccCCcceeEeecCcceeEEeEEEEEeEEEcCEEEeEEEEE
Q 016931 199 VDMEVNGIPLKAFVDSGAQSTIISKSCAERCGLLRLLDDRYRGVAHGVGQSEILGRIHVAPIKIGNVFYPCSFVV 273 (380)
Q Consensus 199 v~v~Ing~~v~alVDTGA~~siIs~~~a~rlgL~~~~~~~~~~~~~gvg~~~~~g~i~~~~i~ig~~~~~~~~~V 273 (380)
+.++|.|..+++.-||||+.|+|...+.+. +..+.+.......| .....+.-..++|.|+.+.+.++-
T Consensus 10 L~vEiKg~kLkg~WDsGA~ITCiP~~fL~~---E~PI~~~~I~TIHG----~k~q~vYYl~fKv~GRKveaEVi~ 77 (107)
T 2jys_A 10 LEAEIKGTKLKAHWDSGATITCVPEAFLED---ERPIQTMLIKTIHG----EKQQDVYYLTFKVQGRKVEAEVLA 77 (107)
T ss_dssp EEEEETTEEEEEEECTTCSSEEEEGGGTTT---CCCSEEEEEECSSC----EEEEEEEEEEEEESSCEEEEEEEE
T ss_pred eeEEEeCcEEEEEecCCCeEEEcchHHhcc---cccccceEEEEecC----ceeceEEEEEEEEcCeEEEEEEec
Confidence 678999999999999999999999988542 11111111112222 333455566889999887755443
No 131
>1s3s_G P47 protein; AAA ATPase, protein-protein complex, UBX domain, protein binding; HET: ADP; 2.90A {Rattus norvegicus} SCOP: d.15.1.2 PDB: 1i42_A 1jru_A
Probab=95.30 E-value=0.049 Score=45.29 Aligned_cols=67 Identities=10% Similarity=0.236 Sum_probs=55.1
Q ss_pred EEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHh-CCCCcCeEEe--cCCeecCC-cccchhcCCCCCcEEE
Q 016931 2 RITVMTADEQIISLDVDPHETVENVKALLEVET-QVPLQQQQLL--YNGREMNN-AEKLSALGVKDEDLVM 68 (380)
Q Consensus 2 ~ItVk~~~g~~~~i~V~~~~TV~~LK~~I~~~~-gip~~~q~Li--~~Gk~L~D-~~tL~~~gI~dg~~I~ 68 (380)
+|-|+..+|..+.-.+..+.||.+|...|.... +.......|+ |-.|.|.| +.||.++|+.+..+|.
T Consensus 54 ~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~~~~~~~~f~L~t~fPrk~l~d~~~TL~eagL~psavl~ 124 (127)
T 1s3s_G 54 NIQIRLADGGRLVQKFNHSHRISDIRLFIVDARPAMAATSFVLMTTFPNKELADENQTLKEANLLNAVIVQ 124 (127)
T ss_dssp CEEEEETTTTEEEEECCSSCBHHHHHHHHHHHCSGGGTSCEEEEETTTTEECCSTTCBHHHHTCSSCEEEE
T ss_pred EEEEECCCCCEEEEEeCCCCCHHHHHHHHHHhCcCCCCCCeEEecCCCCCCCCCCCCcHHHCCCcCceEEE
Confidence 578899999998899999999999999999864 3455667776 67888986 5899999999865543
No 132
>3qvc_A Histo-aspartic protease; HAP, plasmepsin, zymogen, hydrolase; 2.10A {Plasmodium falciparum} PDB: 3qvi_A* 3fns_A 3fnt_A* 3fnu_A*
Probab=95.11 E-value=0.067 Score=53.79 Aligned_cols=91 Identities=19% Similarity=0.418 Sum_probs=61.9
Q ss_pred ceeEEeeeec--CeeEEEEEcCCccccccC-HHHH-HHcCCccccCC----cc------eeEeecCcceeEEeEEEEEeE
Q 016931 195 VMLYVDMEVN--GIPLKAFVDSGAQSTIIS-KSCA-ERCGLLRLLDD----RY------RGVAHGVGQSEILGRIHVAPI 260 (380)
Q Consensus 195 ~~lyv~v~In--g~~v~alVDTGA~~siIs-~~~a-~rlgL~~~~~~----~~------~~~~~gvg~~~~~g~i~~~~i 260 (380)
...|+++.|+ ++++.+++|||++.+.+. ..|. ..|+-....+. .+ ..+..|-|. ..|.+....|
T Consensus 137 ~~Y~~~I~IGTPpQ~~~vi~DTGSs~lWV~s~~C~s~~C~~~~~ydps~SsT~~~~~~~f~i~YgdGs--~~G~~~~Dtv 214 (451)
T 3qvc_A 137 VLSFGEAKLGDNGQKFNFLFHTASSNVWVPSIKCTSESCESKNHYDSSKSKTYEKDDTPVKLTSKAGT--ISGIFSKDLV 214 (451)
T ss_dssp EEEEEEEEETTTTEEEEEEEESSBCSEEEEBTTCCSGGGTTSCCBCGGGCTTCEEEEEEEEEECSSEE--EEEEEEEEEE
T ss_pred CEEEEEEEECCCCcEEEEEEcCCCccEEEecCCCCccccCCCCCCCCCCCcccccCCCEEEEEECCCE--EEEEEEEEEE
Confidence 4589999998 799999999999998884 3442 23443222221 11 113344443 7899999999
Q ss_pred EEcCEEEeEEEEEecC----------CCCceeeeHHH
Q 016931 261 KIGNVFYPCSFVVLDS----------PNMEFLFGLDM 287 (380)
Q Consensus 261 ~ig~~~~~~~~~Vl~~----------~~~d~iLG~D~ 287 (380)
.+|+..++..|.+... ...|+||||-+
T Consensus 215 ~igg~~v~~~Fg~a~~t~~~~~~f~~~~~dGILGLg~ 251 (451)
T 3qvc_A 215 TIGKLSVPYKFIEMTEIVGFEPFYSESDVDGVFGLGW 251 (451)
T ss_dssp EETTEEEEEEEEEEEEEEECTTHHHHSCCCEEEECSS
T ss_pred EECCEEEEEEEEEEEeccccCCCccCCCCCEEEecCC
Confidence 9999777766666544 35799999964
No 133
>2daj_A KIAA0977 protein, COBL-like 1; ubiquitin-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=94.92 E-value=0.061 Score=41.34 Aligned_cols=68 Identities=15% Similarity=0.318 Sum_probs=57.4
Q ss_pred EEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCCCcCeEEecC---CeecCCcccchhcCCCCCcEEEEeec
Q 016931 2 RITVMTADEQIISLDVDPHETVENVKALLEVETQVPLQQQQLLYN---GREMNNAEKLSALGVKDEDLVMMVSN 72 (380)
Q Consensus 2 ~ItVk~~~g~~~~i~V~~~~TV~~LK~~I~~~~gip~~~q~Li~~---Gk~L~D~~tL~~~gI~dg~~I~l~~~ 72 (380)
++.|.....+...+.|+|..++.+|--.|..++.+.|+.-.|... +.+|+-+++|.+|||++ ++....
T Consensus 12 RLvVNy~~tQKtVvRVSP~vpL~ellp~IC~Kcefdp~~~~Ll~d~~~~e~LdLskSLndlgirE---Lya~d~ 82 (91)
T 2daj_A 12 RVVINFKKTQKTIVRVSPHASLQELAPIICSKCEFDPLHTLLLKDYQSQEPLDLTKSLNDLGLRE---LYAMDV 82 (91)
T ss_dssp EEEEEETTTEEEEEEECSSSCTTTHHHHHHHHTTCCTTSEEEESCSSCCCBCCTTSCHHHHTCSE---EEEEEC
T ss_pred EEEEeecCcceeEEEeCCCCcHHHHHHHHhhcccCChhhEEEecCCCCCcccchhcchhhhhhhh---hheecc
Confidence 466777667778899999999999999999999999999998853 45688899999999997 666643
No 134
>2qsf_X RAD23, UV excision repair protein RAD23; alpha-beta structure, beta hairpin, transglutaminase fold, DNA-damage recognition, DNA repair; HET: DNA; 2.35A {Saccharomyces cerevisiae} PDB: 2qsg_X* 2qsh_X* 1x3z_B* 1x3w_B* 3esw_B*
Probab=94.62 E-value=0.018 Score=50.43 Aligned_cols=41 Identities=15% Similarity=0.355 Sum_probs=34.0
Q ss_pred HHHHHHHhcCHHHHHHHhh----cCHHHHHHhcCCCHHHHHHHHHH
Q 016931 94 AAFQQHIRNDANLMTQLFQ----SDPELAQVLLGNDLNKLQDLLRE 135 (380)
Q Consensus 94 ~~~~q~~l~nP~~l~qL~~----~nP~La~ai~~~d~~~~~~~l~~ 135 (380)
..||+.+.+||+++..|++ +||.|.++|. .|++.|.++|..
T Consensus 36 ~qlRq~vqqNPqlL~~lLqqig~~NPqL~qlI~-qNqe~Fl~mLne 80 (171)
T 2qsf_X 36 LSLRQVVSGNPEALAPLLENISARYPQLREHIM-ANPEVFVSMLLE 80 (171)
T ss_dssp HHHHHHHHTCGGGHHHHHHHHHHHCTTHHHHHH-HCHHHHHHHHHH
T ss_pred HHHHHHHHHCHHHHHHHHHHHHhhCHHHHHHHH-HCHHHHHHHHhC
Confidence 5688999999987666655 9999999996 699999998864
No 135
>2x0b_A Renin; hydrolase-hormone complex, hydrolase hormone complex, vasoconstrictor, glycoprotein, hypertension, serpins; 4.33A {Homo sapiens}
Probab=94.49 E-value=0.075 Score=52.20 Aligned_cols=92 Identities=17% Similarity=0.367 Sum_probs=61.2
Q ss_pred cceeEEeeeec--CeeEEEEEcCCcccccc-CHHHH---HHcCCccccCC----cc------eeEeecCcceeEEeEEEE
Q 016931 194 VVMLYVDMEVN--GIPLKAFVDSGAQSTII-SKSCA---ERCGLLRLLDD----RY------RGVAHGVGQSEILGRIHV 257 (380)
Q Consensus 194 ~~~lyv~v~In--g~~v~alVDTGA~~siI-s~~~a---~rlgL~~~~~~----~~------~~~~~gvg~~~~~g~i~~ 257 (380)
-...|+++.|. .+++++++|||++.+-+ +..|. ..|......+. .+ ..+..|-|. ..|.+..
T Consensus 60 ~~~Y~~~I~IGTP~Q~f~vi~DTGSs~lWV~s~~C~~~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~Gs--~~G~~~~ 137 (383)
T 2x0b_A 60 DTQYYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSRLYTACVYHKLFDASDSSSYKHNGTELTLRYSTGT--VSGFLSQ 137 (383)
T ss_dssp TTEEEEEEEETTTTEEEEEEEETTCCCEEEEBTTSCTTSHHHHTSCCBCGGGCTTCEEEEEEEEEECSSCE--EEEEEEE
T ss_pred CCEEEEEEEECCCCcEEEEEEeCCCCCeEEeccCCCCCcccccCCCCCCCCCCCcEEECCcEEEEEcCCcc--EEEEEEe
Confidence 34688999997 78999999999999877 44443 24433222221 11 123344443 6799999
Q ss_pred EeEEEcCEEEeEEEEEecC--------CCCceeeeHHH
Q 016931 258 APIKIGNVFYPCSFVVLDS--------PNMEFLFGLDM 287 (380)
Q Consensus 258 ~~i~ig~~~~~~~~~Vl~~--------~~~d~iLG~D~ 287 (380)
..|.||+..++..|.+... ...|+||||-+
T Consensus 138 Dtv~ig~~~v~~~Fg~a~~~~g~~f~~~~~dGIlGLg~ 175 (383)
T 2x0b_A 138 DIITVGGITVTQMFGEVTEMPALPFMLAEFDGVVGMGF 175 (383)
T ss_dssp EEEEETTEEEEEEEEEEEECCHHHHTTCSSSEEEECSC
T ss_pred eEEEEcCceEEEEEEEEEecCCcccccCCCceEeccCC
Confidence 9999999766655555442 35799999864
No 136
>1pve_A HHR23B, UV excision repair protein RAD23 homolog B; XPC binding domain, solution structure, nucleotide excision repair, chaps, DNA binding protein; NMR {Homo sapiens} SCOP: a.189.1.1
Probab=94.38 E-value=0.038 Score=41.32 Aligned_cols=40 Identities=20% Similarity=0.392 Sum_probs=32.3
Q ss_pred HHHHHHHhcCHHH----HHHHhhcCHHHHHHhcCCCHHHHHHHHH
Q 016931 94 AAFQQHIRNDANL----MTQLFQSDPELAQVLLGNDLNKLQDLLR 134 (380)
Q Consensus 94 ~~~~q~~l~nP~~----l~qL~~~nP~La~ai~~~d~~~~~~~l~ 134 (380)
..||+.+.+||++ +++|.++||+|.+.|. .|++.|-+++.
T Consensus 16 ~qlR~~vqqNP~lL~~lLqqL~~~NPqL~q~I~-~n~e~Fl~ll~ 59 (72)
T 1pve_A 16 QQMRQIIQQNPSLLPALLQQIGRENPQLLQQIS-QHQEHFIQMLN 59 (72)
T ss_dssp TTHHHHHTTCGGGHHHHHHHHHTTCHHHHHHHH-TTHHHHHHHHH
T ss_pred HHHHHHHHHCHHHHHHHHHHHHhHCHHHHHHHH-HCHHHHHHHHc
Confidence 5689999999775 5566669999999986 68888888874
No 137
>1ryj_A Unknown; beta/alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.15.3.2
Probab=93.80 E-value=0.3 Score=35.90 Aligned_cols=61 Identities=23% Similarity=0.396 Sum_probs=46.4
Q ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCCCcCeEEecCCeecCCcccchhcCCCCCcEEEEee
Q 016931 1 MRITVMTADEQIISLDVDPHETVENVKALLEVETQVPLQQQQLLYNGREMNNAEKLSALGVKDEDLVMMVS 71 (380)
Q Consensus 1 M~ItVk~~~g~~~~i~V~~~~TV~~LK~~I~~~~gip~~~q~Li~~Gk~L~D~~tL~~~gI~dg~~I~l~~ 71 (380)
|+|+|.... ....++++...|+.+|.+.+ ++++....+..||..+..+. -+++||.|-++.
T Consensus 5 m~i~vNg~~-~~~~~~~~~~~tv~~Ll~~l----~~~~~~v~vavN~~~v~~~~-----~L~~gD~V~ii~ 65 (70)
T 1ryj_A 5 MKFTVITDD-GKKILESGAPRRIKDVLGEL----EIPIETVVVKKNGQIVIDEE-----EIFDGDIIEVIR 65 (70)
T ss_dssp EEEEEEETT-EEEEEEESSCCBHHHHHHHT----TCCTTTEEEEETTEECCTTS-----BCCTTCEEEEEE
T ss_pred EEEEEeCcc-CceeEECCCCCcHHHHHHHh----CCCCCCEEEEECCEECCCcc-----cCCCCCEEEEEe
Confidence 677777633 23467888889999999875 66777777778999887654 588999998874
No 138
>1yg9_A Aspartic protease BLA G 2; allegren, hydrolase, allergen; HET: NAG; 1.30A {Blattella germanica} PDB: 2nr6_A* 3liz_A*
Probab=93.33 E-value=0.19 Score=48.02 Aligned_cols=91 Identities=14% Similarity=0.202 Sum_probs=59.0
Q ss_pred ceeEEeeeecCeeEEEEEcCCcccccc-CHHHH-HHc--CCccccCCcce---------eEeecCcceeEEeEEEEEeEE
Q 016931 195 VMLYVDMEVNGIPLKAFVDSGAQSTII-SKSCA-ERC--GLLRLLDDRYR---------GVAHGVGQSEILGRIHVAPIK 261 (380)
Q Consensus 195 ~~lyv~v~Ing~~v~alVDTGA~~siI-s~~~a-~rl--gL~~~~~~~~~---------~~~~gvg~~~~~g~i~~~~i~ 261 (380)
...|+++.|+++++++++|||++.+.+ +..|. ..| ......+.... .+..|-| ...|.+....|.
T Consensus 17 ~~Y~~~i~iG~Q~~~v~~DTGSs~lWv~~~~C~~~~C~~~~~~~y~~~~ST~~~~~~~~~i~Yg~G--s~~G~~~~Dtv~ 94 (330)
T 1yg9_A 17 TQYAGITKIGNQNFLTVFDSTSCNVVVASQECVGGACVCPNLQKYEKLKPKYISDGNVQVKFFDTG--SAVGRGIEDSLT 94 (330)
T ss_dssp TTSEEEEEETTEEEEEEEETTCCCEEEECTTCCSGGGGSTTCCCCCCSSCEEEEEEEEEEEETTTE--EEEEEEEEEEEE
T ss_pred CEEEEEEEECCEEEEEEEeCCCcceEEecCCCCCccCcccccCccCCCCCceEECCCEEEEEECCc--eEEEEEEEEEEE
Confidence 357899999999999999999999876 45553 245 32222221111 1223333 348888888999
Q ss_pred EcCEEEe-EEEEEecC-------CCCceeeeHHH
Q 016931 262 IGNVFYP-CSFVVLDS-------PNMEFLFGLDM 287 (380)
Q Consensus 262 ig~~~~~-~~~~Vl~~-------~~~d~iLG~D~ 287 (380)
||+..++ ..|.+... ...|+||||-+
T Consensus 95 ig~~~~~~~~fg~~~~~~~~f~~~~~~GilGLg~ 128 (330)
T 1yg9_A 95 ISQLTTSQQDIVLADELSQEVCILSADVVVGIAA 128 (330)
T ss_dssp ETTEEEEEEEEEEEEEECTHHHHTTCSEEEECSC
T ss_pred ECCEEEcCeEEEEEEEcccccccccCceEEEcCc
Confidence 9996554 45544432 24799999875
No 139
>4e71_A Plexin-B2, MM1; transmembrane, signaling, RBD, structural genomics consortium, SGC, signaling protein; 2.26A {Homo sapiens}
Probab=93.29 E-value=0.39 Score=38.88 Aligned_cols=62 Identities=16% Similarity=0.234 Sum_probs=45.0
Q ss_pred CCEEEEEeCCCCCHHHHHHHHHHHh--CCC------CcCeEEec----CCeecCCc-------------ccchhcCCCCC
Q 016931 10 EQIISLDVDPHETVENVKALLEVET--QVP------LQQQQLLY----NGREMNNA-------------EKLSALGVKDE 64 (380)
Q Consensus 10 g~~~~i~V~~~~TV~~LK~~I~~~~--gip------~~~q~Li~----~Gk~L~D~-------------~tL~~~gI~dg 64 (380)
+..+.+.|-..+||.++|++|-... |+| +++..|-+ .|++|.|. .||+.|+|.||
T Consensus 23 ~~~i~vkVLdCDTItQvKeKiLd~vyk~~pyS~rP~~~~~dLEwr~g~~~~iL~D~D~ts~~~~~wkrLNTL~HY~V~dg 102 (111)
T 4e71_A 23 VDAIPVKVLNCDTISQVKEKIIDQVYRGQPCSCWPRPDSVVLEWRPGSTAQILSDLDLTSQREGRWKRVNTLMHYNVRDG 102 (111)
T ss_dssp CCCEEEEEETTCBHHHHHHHHHHHHTC---------CCSEEEEEC--CCCEECCSSCTTSCC---CCCCCBHHHHTCCTT
T ss_pred CCceeeeeeccCcHHHHHHHHHHHHHcCCccccCCCCCceeeEEecCCCCccccccCccceecCcceEecchhhcCCCCC
Confidence 4557888888999999999998764 333 34556665 24566651 37999999999
Q ss_pred cEEEEee
Q 016931 65 DLVMMVS 71 (380)
Q Consensus 65 ~~I~l~~ 71 (380)
.+|-++.
T Consensus 103 atl~l~~ 109 (111)
T 4e71_A 103 ATLILSK 109 (111)
T ss_dssp CEEEEEE
T ss_pred CEEEEEe
Confidence 9998875
No 140
>1miq_A Plasmepsin; aspartic proteinase zymogen, domain opening, hydrolase; 2.50A {Plasmodium vivax} SCOP: b.50.1.2 PDB: 1ls5_A*
Probab=93.19 E-value=0.1 Score=50.96 Aligned_cols=91 Identities=22% Similarity=0.490 Sum_probs=59.8
Q ss_pred ceeEEeeeec--CeeEEEEEcCCccccccC-HHHH-HHcCCccccCC----cce------eEeecCcceeEEeEEEEEeE
Q 016931 195 VMLYVDMEVN--GIPLKAFVDSGAQSTIIS-KSCA-ERCGLLRLLDD----RYR------GVAHGVGQSEILGRIHVAPI 260 (380)
Q Consensus 195 ~~lyv~v~In--g~~v~alVDTGA~~siIs-~~~a-~rlgL~~~~~~----~~~------~~~~gvg~~~~~g~i~~~~i 260 (380)
...|+++.|+ ++++.+++|||++.+.+. ..|. ..|+.....+. .+. .+..|-|. ..|.+....|
T Consensus 62 ~~Y~~~i~iGTP~Q~~~v~~DTGSs~lWv~~~~C~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~Gs--~~G~~~~Dtv 139 (375)
T 1miq_A 62 IMFYGEGEVGDNHQKFMLIFDTGSANLWVPSKKCNSSGCSIKNLYDSSKSKSYEKDGTKVDITYGSGT--VKGFFSKDLV 139 (375)
T ss_dssp EEEECCCEETTTTEECCEEEETTCCCEEEEBTTCCSSGGGGSCCBCGGGCTTCEEEEEEEEEEETTEE--EEEEEEEEEE
T ss_pred CEEEEEEEECCCCeEEEEEEeCCCcceEEccCCCCcccccCCCcCCCccCCceEECCcEEEEEeCCCe--EEEEEEEEEE
Confidence 4678899998 899999999999998774 4442 13332111211 111 23344444 6798988999
Q ss_pred EEcCEEEeEEEEEecC----------CCCceeeeHHH
Q 016931 261 KIGNVFYPCSFVVLDS----------PNMEFLFGLDM 287 (380)
Q Consensus 261 ~ig~~~~~~~~~Vl~~----------~~~d~iLG~D~ 287 (380)
.||+..++-.|.+... ...|+||||-+
T Consensus 140 ~ig~~~v~~~Fg~~~~~~~~~~~f~~~~~dGilGLg~ 176 (375)
T 1miq_A 140 TLGHLSMPYKFIEVTDTDDLEPIYSSVEFDGILGLGW 176 (375)
T ss_dssp EETTEEEEEEEEEEEECGGGTTHHHHSCCCEEEECSS
T ss_pred EEcCceECcEEEEEEeccccccccccCCCceEEeCCC
Confidence 9999665555555443 46799999865
No 141
>2bju_A Plasmepsin II; aspartic proteinase, drug design, malaria, aspartyl protease, glycoprotein, hydrolase, signal, zymogen; HET: IH4; 1.56A {Plasmodium falciparum} SCOP: b.50.1.2 PDB: 1pfz_A 1xdh_A* 1lf3_A 1w6h_A* 1w6i_A* 1lf4_A* 1lf2_A* 1lee_A* 1m43_A* 2igx_A* 1sme_A* 1me6_A* 1xe6_A* 1xe5_A* 2igy_A* 2r9b_A 3f9q_A 3qrv_A 3qs1_A* 2anl_A* ...
Probab=93.12 E-value=0.15 Score=51.30 Aligned_cols=91 Identities=23% Similarity=0.446 Sum_probs=60.4
Q ss_pred ceeEEeeeec--CeeEEEEEcCCccccccC-HHHH-HHcCCccccCC----cc------eeEeecCcceeEEeEEEEEeE
Q 016931 195 VMLYVDMEVN--GIPLKAFVDSGAQSTIIS-KSCA-ERCGLLRLLDD----RY------RGVAHGVGQSEILGRIHVAPI 260 (380)
Q Consensus 195 ~~lyv~v~In--g~~v~alVDTGA~~siIs-~~~a-~rlgL~~~~~~----~~------~~~~~gvg~~~~~g~i~~~~i 260 (380)
...|+++.|+ ++++.+++|||++.+.+. ..|. ..|+-....+. .+ ..+..|-|. ..|.+....|
T Consensus 138 ~~Y~~~I~IGTP~Q~~~vi~DTGSs~lWV~~~~C~~~~C~~~~~ydps~SsT~~~~~~~~~i~YgdGs--~~G~~~~Dtv 215 (453)
T 2bju_A 138 IMFYGDAEVGDNQQPFTFILDTGSANLWVPSVKCTTAGCLTKHLYDSSKSRTYEKDGTKVEMNYVSGT--VSGFFSKDLV 215 (453)
T ss_dssp TEEEEEEEETTTTEEEEEEEETTCCCEEEEBTTCCSTTGGGSCCBCGGGCTTCEEEEEEEEEECSSSE--EEEEEEEEEE
T ss_pred CEEEEEEEECCCCeEEEEEEECCCcceEEeccCCCccccCCCCcCCCccCCceeECCcEEEEEcCCCC--eEEEEEEEEE
Confidence 4689999998 899999999999998774 4442 12322111111 11 123444444 5799999999
Q ss_pred EEcCEEEeEEEEEecCC----------CCceeeeHHH
Q 016931 261 KIGNVFYPCSFVVLDSP----------NMEFLFGLDM 287 (380)
Q Consensus 261 ~ig~~~~~~~~~Vl~~~----------~~d~iLG~D~ 287 (380)
.+|+..++..|.+.... ..|+||||-+
T Consensus 216 ~ig~~~v~~~Fg~a~~~~~~g~~f~~~~~dGIlGLg~ 252 (453)
T 2bju_A 216 TVGNLSLPYKFIEVIDTNGFEPTYTASTFDGILGLGW 252 (453)
T ss_dssp EETTEEEEEEEEEEEECGGGTTHHHHSSCCEEEECSC
T ss_pred EEeCcEEEEEEEEEEEecccCccccccCCceeEeccC
Confidence 99997766666555422 4799999864
No 142
>3k1w_A Renin; protease, alternative splicing, aspartyl protease, cleavage on PAIR of basic residues, disease mutation, disulfide bond, glycoprotein; HET: BFX NDG HSQ; 1.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 3d91_A* 3g70_A* 3g6z_A* 3own_A* 2iko_A* 1bbs_A* 1rne_A* 2bkt_A* 2bks_A* 2iku_A* 2il2_A* 2ren_A* 2v0z_C* 2v10_C* 2v11_C* 2v12_C* 2v13_A* 2v16_C* 3g72_A* 3oot_A* ...
Probab=92.93 E-value=0.58 Score=44.42 Aligned_cols=91 Identities=16% Similarity=0.378 Sum_probs=59.4
Q ss_pred ceeEEeeeec--CeeEEEEEcCCccccccC-HHHH---HHcCCccccC----Ccc------eeEeecCcceeEEeEEEEE
Q 016931 195 VMLYVDMEVN--GIPLKAFVDSGAQSTIIS-KSCA---ERCGLLRLLD----DRY------RGVAHGVGQSEILGRIHVA 258 (380)
Q Consensus 195 ~~lyv~v~In--g~~v~alVDTGA~~siIs-~~~a---~rlgL~~~~~----~~~------~~~~~gvg~~~~~g~i~~~ 258 (380)
...|+++.|. .+++++++|||++.+.+. ..|. ..|......+ ..+ ..+..|-|. ..|.+...
T Consensus 18 ~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~gs--~~G~~~~D 95 (341)
T 3k1w_A 18 TQYYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSRLYTACVYHKLFDASDSSSYKHNGTELTLRYSTGT--VSGFLSQD 95 (341)
T ss_dssp TEEEEEEEETTTTEEEEEEEETTCCCEEEEBTTSCTTCHHHHTSCCBCGGGCTTCEEEEEEEEEEETTEE--EEEEEEEE
T ss_pred CEEEEEEEEcCCCcEEEEEEeCCCcceEEccCCCCCCCCcccCCCCCCCCcCcCeeECCCEEEEEECCcE--EEEEEEEE
Confidence 4578999998 689999999999998883 3332 1232211111 111 123344443 68999899
Q ss_pred eEEEcCEEEeEEEEEecC--------CCCceeeeHHH
Q 016931 259 PIKIGNVFYPCSFVVLDS--------PNMEFLFGLDM 287 (380)
Q Consensus 259 ~i~ig~~~~~~~~~Vl~~--------~~~d~iLG~D~ 287 (380)
.|.||+..+...|.+... ...|+||||-+
T Consensus 96 ~v~ig~~~v~~~fg~~~~~~~~~~~~~~~~GilGLg~ 132 (341)
T 3k1w_A 96 IITVGGITVTQMFGEVTEMPALPFMLAEFDGVVGMGF 132 (341)
T ss_dssp EEEETTEEEEEEEEEEEECCHHHHTTCSSSEEEECSC
T ss_pred EEEECCceeeEEEEEEEEccccccccCCcceEEECCc
Confidence 999999666666665542 24689999864
No 143
>2f4m_B UV excision repair protein RAD23 homolog B; glycoproteins, ubiquitin-dependent protein degradation, NUCL excision repair, peptide:N-glycanase; 1.85A {Mus musculus} SCOP: a.189.1.1 PDB: 2f4o_B*
Probab=92.92 E-value=0.12 Score=37.39 Aligned_cols=39 Identities=21% Similarity=0.400 Sum_probs=29.8
Q ss_pred HHHHHHHhcCHHH----HHHHhhcCHHHHHHhcCCCHHHHHHHH
Q 016931 94 AAFQQHIRNDANL----MTQLFQSDPELAQVLLGNDLNKLQDLL 133 (380)
Q Consensus 94 ~~~~q~~l~nP~~----l~qL~~~nP~La~ai~~~d~~~~~~~l 133 (380)
..+|+.+.+||++ +++|.++||++.+.|. .|++.|-+++
T Consensus 14 ~~lR~~vq~NP~~L~~lLqql~~~nP~l~~~I~-~n~e~Fl~ll 56 (61)
T 2f4m_B 14 QQMRQIIQQNPSLLPALLQQIGRENPQLLQQIS-QHQEHFIQML 56 (61)
T ss_dssp HHHHHHHHHCGGGHHHHHHHHHHHCHHHHHHHH-HSHHHHHHHH
T ss_pred HHHHHHHHHCHHHHHHHHHHHHhHCHHHHHHHH-HCHHHHHHHH
Confidence 5688888889765 5556668999988885 6888887776
No 144
>3cms_A Chymosin B; hydrolase, acid proteinase; 2.00A {Bos taurus} SCOP: b.50.1.2 PDB: 4cms_A 1czi_E* 1cms_A
Probab=92.85 E-value=0.26 Score=46.68 Aligned_cols=91 Identities=11% Similarity=0.276 Sum_probs=58.2
Q ss_pred ceeEEeeeec--CeeEEEEEcCCccccccC-HHHH-HHcCCccccCC----cc------eeEeecCcceeEEeEEEEEeE
Q 016931 195 VMLYVDMEVN--GIPLKAFVDSGAQSTIIS-KSCA-ERCGLLRLLDD----RY------RGVAHGVGQSEILGRIHVAPI 260 (380)
Q Consensus 195 ~~lyv~v~In--g~~v~alVDTGA~~siIs-~~~a-~rlgL~~~~~~----~~------~~~~~gvg~~~~~g~i~~~~i 260 (380)
...|+++.|. .+++++++|||++.+.+. ..|. ..|......+. .+ ..+..|-|. ..|.+....|
T Consensus 14 ~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~Gs--~~G~~~~D~v 91 (323)
T 3cms_A 14 SQYFGKIYLGTPPQEFTVLFDTGSSDFWVPSIYCKSNACKNHQRFDPRKSSTFQNLGKPLSIHYGTGS--MQGILGYDTV 91 (323)
T ss_dssp TEEEEEEEETTTTEEEEEEEETTCCCEEEEBTTCCSHHHHTSCCBCGGGCTTCEEEEEEEEEEETTEE--EEEEEEEEEE
T ss_pred CEEEEEEEECCCCeEEEEEEeCCccceEEcCCCCCcccccCCCCCCCccCCCeEECCcEEEEEeCCCC--eEEEEEEEEE
Confidence 3578999997 789999999999998774 4441 33432111111 11 123344443 5788888899
Q ss_pred EEcCEEEe-EEEEEecC--------CCCceeeeHHH
Q 016931 261 KIGNVFYP-CSFVVLDS--------PNMEFLFGLDM 287 (380)
Q Consensus 261 ~ig~~~~~-~~~~Vl~~--------~~~d~iLG~D~ 287 (380)
.||+..++ ..|.+... ...|+||||-+
T Consensus 92 ~ig~~~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~ 127 (323)
T 3cms_A 92 TVSNIVDIQQTVGLSTQEPGDFFTYAEFDGILGMAY 127 (323)
T ss_dssp EETTEEEEEEEEEEEEECCSHHHHHSSCSEEEECSC
T ss_pred EECCeEEeccEEEEEEecccccccccCCceEEecCc
Confidence 99996554 45554442 25799999853
No 145
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=92.82 E-value=0.31 Score=47.35 Aligned_cols=69 Identities=10% Similarity=0.199 Sum_probs=56.3
Q ss_pred EEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhC----CCCcCeEEec------CCeecCCcccchhcCCCCCcEEEEeec
Q 016931 3 ITVMTADEQIISLDVDPHETVENVKALLEVETQ----VPLQQQQLLY------NGREMNNAEKLSALGVKDEDLVMMVSN 72 (380)
Q Consensus 3 ItVk~~~g~~~~i~V~~~~TV~~LK~~I~~~~g----ip~~~q~Li~------~Gk~L~D~~tL~~~gI~dg~~I~l~~~ 72 (380)
+.|... +.+.++.+++++||.+....|.++.. .++++--|+. +|+-|++++||+.|++++|+.|...++
T Consensus 6 ~~~~~~-~~~~~~~f~~~~~v~~~~~~i~e~~~~~~~~~~~~y~l~~~~~~~~~~~Wl~~~~~l~~y~~~~~~~l~~~~~ 84 (371)
T 3ivf_A 6 LKISIG-NVVKTMQFEPSTMVYDACRMIRERIPEALAGPPNDFGLFLSDDDPKKGIWLEAGKALDYYMLRNGDTMEYRKK 84 (371)
T ss_dssp EEEEET-TEEEEEEECTTCBHHHHHHHHHTTCGGGGSSCGGGEEEEECCSSGGGCEECCTTSBGGGGTCCTTCEEEEEEC
T ss_pred EEEEec-ceeEEEEECCCCCHHHHHHHHHHhcccccCCCHHHCeEeccCCCCCcCEeccCCCCHHHhCCCCCceeeccCc
Confidence 455554 66788999999999999999988874 3677778876 456688899999999999999988743
No 146
>1b5f_A Protein (cardosin A); hydrolase, aspartic proteinase; HET: NAG FUC BMA MAN; 1.72A {Cynara cardunculus} SCOP: b.50.1.2
Probab=92.78 E-value=0.3 Score=44.34 Aligned_cols=91 Identities=16% Similarity=0.395 Sum_probs=57.2
Q ss_pred ceeEEeeeec--CeeEEEEEcCCcccccc-CHHHH--HHcCCccccCC----cc------eeEeecCcceeEEeEEEEEe
Q 016931 195 VMLYVDMEVN--GIPLKAFVDSGAQSTII-SKSCA--ERCGLLRLLDD----RY------RGVAHGVGQSEILGRIHVAP 259 (380)
Q Consensus 195 ~~lyv~v~In--g~~v~alVDTGA~~siI-s~~~a--~rlgL~~~~~~----~~------~~~~~gvg~~~~~g~i~~~~ 259 (380)
...|+++.|. +++++++||||++.+.+ +..|. ..|+.....+. .+ ..+..|-|. ..|.+....
T Consensus 13 ~~Y~~~i~iGtP~q~~~v~~DTGSs~lWv~~~~C~~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~Gs--~~G~~~~D~ 90 (239)
T 1b5f_A 13 TSYFGEIGIGTPPQKFTVIFDTGSSVLWVPSSKCINSKACRAHSMYESSDSSTYKENGTFGAIIYGTGS--ITGFFSQDS 90 (239)
T ss_dssp TEEEEEEEETTTTEEEEEEEETTCCCEEEEBTTCCSCHHHHTSCCBCGGGCTTCEEEEEEEEEECSSCE--EEEEEEEEE
T ss_pred CEEEEEEEECCCCeEEEEEEeCCCcceEEEcCCCCCCcccCCCCCCCCccCCCeeeCCcEEEEEECCCc--EEEEEEEEE
Confidence 3578999998 79999999999999887 34442 23432111211 11 123344444 578888889
Q ss_pred EEEcCEEEe-EEEEEec--------CCCCceeeeHHH
Q 016931 260 IKIGNVFYP-CSFVVLD--------SPNMEFLFGLDM 287 (380)
Q Consensus 260 i~ig~~~~~-~~~~Vl~--------~~~~d~iLG~D~ 287 (380)
|.+|+..++ ..|.+.. ....|+||||-+
T Consensus 91 v~~g~~~v~~~~fg~~~~~~~~~f~~~~~~GilGLg~ 127 (239)
T 1b5f_A 91 VTIGDLVVKEQDFIEATDEADNVFLHRLFDGILGLSF 127 (239)
T ss_dssp EEETTEEEEEEEEEEEEEECHHHHTTCSCCEEEECSC
T ss_pred EEECCcEEccEEEEEEEeccCccccccCcceEEecCc
Confidence 999985543 2333222 235799999854
No 147
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=92.50 E-value=0.24 Score=38.01 Aligned_cols=45 Identities=13% Similarity=0.282 Sum_probs=39.7
Q ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCCCcCeEEecCC
Q 016931 1 MRITVMTADEQIISLDVDPHETVENVKALLEVETQVPLQQQQLLYNG 47 (380)
Q Consensus 1 M~ItVk~~~g~~~~i~V~~~~TV~~LK~~I~~~~gip~~~q~Li~~G 47 (380)
|+|+|... .++.|+|+++.+..+|+++|.++++++++..+|.|+.
T Consensus 6 ~~VKV~~~--~tvairvp~~~~y~~L~~~l~~kL~l~~~~~~LsYk~ 50 (83)
T 1oey_A 6 YTLKVHYK--YTVVMKTQPGLPYSQVRDMVSKKLELRLEHTKLSYRP 50 (83)
T ss_dssp EEEEEESS--SEEEEEECTTCCHHHHHHHHHHHTTCCGGGCCEEECC
T ss_pred EEEEEEEE--EEEEEECCCCCCHHHHHHHHHHHhCCCcceeEEEeeC
Confidence 45667663 6899999999999999999999999999999999865
No 148
>1tzs_A Cathepsin E; hydrolase, aspartic protease, activation intermediate; 2.35A {Homo sapiens}
Probab=92.50 E-value=0.36 Score=46.32 Aligned_cols=91 Identities=12% Similarity=0.253 Sum_probs=59.4
Q ss_pred ceeEEeeeec--CeeEEEEEcCCccccccC-HHHH-HHcCCccccCC----------cceeEeecCcceeEEeEEEEEeE
Q 016931 195 VMLYVDMEVN--GIPLKAFVDSGAQSTIIS-KSCA-ERCGLLRLLDD----------RYRGVAHGVGQSEILGRIHVAPI 260 (380)
Q Consensus 195 ~~lyv~v~In--g~~v~alVDTGA~~siIs-~~~a-~rlgL~~~~~~----------~~~~~~~gvg~~~~~g~i~~~~i 260 (380)
...|+++.|. ++++++++|||++.+.+. ..|. ..|+.....+. ....+..|-|. ..|.+....|
T Consensus 23 ~~Y~~~i~iGtP~Q~~~v~~DTGSs~lWv~~~~C~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~Gs--~~G~~~~D~v 100 (351)
T 1tzs_A 23 MEYFGTISIGSPPQNFTVIFDTGSSNLWVPSVYCTSPACKTHSRFQPSQSSTYSQPGQSFSIQYGTGS--LSGIIGADQV 100 (351)
T ss_dssp SCCCEEEEETTTTEEEEEEEETTCCCEEEEBTTCCSGGGTTSCCBCGGGCTTCBCCSCEEEEESSSCE--EEEEEEEEEE
T ss_pred CEEEEEEEECCCCeEEEEEEeCCCcceEEecCCCCccccCCCCcCCcccCcceEECCCEEEEEeCCCC--eEEEEEEeEE
Confidence 4578999998 789999999999998874 4443 23433222221 11123445443 5799988999
Q ss_pred EEcCEEEe-EEEEEecC--------CCCceeeeHHH
Q 016931 261 KIGNVFYP-CSFVVLDS--------PNMEFLFGLDM 287 (380)
Q Consensus 261 ~ig~~~~~-~~~~Vl~~--------~~~d~iLG~D~ 287 (380)
.||+..++ ..|.+... ...|+||||-+
T Consensus 101 ~ig~~~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~ 136 (351)
T 1tzs_A 101 SVEGLTVVGQQFGESVTEPGQTFVDAEFDGILGLGY 136 (351)
T ss_dssp EETTEEEEEEEEEEECSCCCGGGGGCSCSEEEECSC
T ss_pred EECCeEECCeEEEEEEeccccccccCCCceEEecCC
Confidence 99996554 55655542 24689999864
No 149
>1bxo_A Protein (penicillopepsin); hydrolase, phosphonate inhibitors, macrocycle; HET: MAN PP7; 0.95A {Penicillium janthinellum} SCOP: b.50.1.2 PDB: 1apu_E* 1apv_E* 1apw_E* 1apt_E* 1bxq_A* 1ppk_E* 1ppl_E* 1ppm_E* 2wea_A* 2web_A* 2wec_A* 2wed_A* 3app_A
Probab=92.47 E-value=0.23 Score=47.15 Aligned_cols=93 Identities=14% Similarity=0.184 Sum_probs=58.3
Q ss_pred cceeEEeeeecCeeEEEEEcCCccccccC-HHHHH-HcCCccccCC---------cceeEeecCcceeEEeEEEEEeEEE
Q 016931 194 VVMLYVDMEVNGIPLKAFVDSGAQSTIIS-KSCAE-RCGLLRLLDD---------RYRGVAHGVGQSEILGRIHVAPIKI 262 (380)
Q Consensus 194 ~~~lyv~v~Ing~~v~alVDTGA~~siIs-~~~a~-rlgL~~~~~~---------~~~~~~~gvg~~~~~g~i~~~~i~i 262 (380)
-...|+++.|.++++++++|||++.+.+. ..|.. .|.-....+. ....+..|-|. ...|.+....|.|
T Consensus 14 ~~~Y~~~i~iG~Q~~~v~~DTGSs~lWv~~~~C~~~~c~~~~~y~~~~Ss~~~~~~~~~i~Yg~Gs-~~~G~~~~D~v~i 92 (323)
T 1bxo_A 14 DEEYITPVTIGGTTLNLNFDTGSADLWVFSTELPASQQSGHSVYNPSATGKELSGYTWSISYGDGS-SASGNVFTDSVTV 92 (323)
T ss_dssp GSCEEEEEEETTEEEEEEEETTCCCEEECBTTSCHHHHTTSCCBCHHHHCEEEEEEEEEEECTTSC-EEEEEEEEEEEEE
T ss_pred CCEEEEEEEECCEEEEEEEeCCCcceEEecCCCCchhccCCCCCCcccCCcccCCCeEEEEeCCCC-eEEEEEEEEEEEE
Confidence 34578999999999999999999999874 33321 1211111111 01112333332 3678888889999
Q ss_pred cCEEEe-EEEEEecC--------CCCceeeeHHH
Q 016931 263 GNVFYP-CSFVVLDS--------PNMEFLFGLDM 287 (380)
Q Consensus 263 g~~~~~-~~~~Vl~~--------~~~d~iLG~D~ 287 (380)
|+..++ ..|.+... ...|+||||-+
T Consensus 93 g~~~v~~~~fg~~~~~~~~~~~~~~~~GilGLg~ 126 (323)
T 1bxo_A 93 GGVTAHGQAVQAAQQISAQFQQDTNNDGLLGLAF 126 (323)
T ss_dssp TTEEEEEEEEEEEEEECHHHHTCTTCSEEEECSC
T ss_pred CCEEECcEEEEEEEecCcccccCCCCceEEEeCc
Confidence 986544 44544432 36799999865
No 150
>3psg_A Pepsinogen; hydrolase(acid proteinase zymogen); 1.65A {Sus scrofa} SCOP: b.50.1.2 PDB: 2psg_A 4pep_A* 3pep_A* 1f34_A* 1psa_A* 1yx9_A 5pep_A 1flh_A 1qrp_E* 1psn_A* 1pso_E* 3utl_A
Probab=92.45 E-value=1.1 Score=43.44 Aligned_cols=91 Identities=12% Similarity=0.332 Sum_probs=59.0
Q ss_pred ceeEEeeeec--CeeEEEEEcCCccccccC-HHHHH-HcCCccccCC----cc------eeEeecCcceeEEeEEEEEeE
Q 016931 195 VMLYVDMEVN--GIPLKAFVDSGAQSTIIS-KSCAE-RCGLLRLLDD----RY------RGVAHGVGQSEILGRIHVAPI 260 (380)
Q Consensus 195 ~~lyv~v~In--g~~v~alVDTGA~~siIs-~~~a~-rlgL~~~~~~----~~------~~~~~gvg~~~~~g~i~~~~i 260 (380)
...|+++.|. .+++++++|||++.+.+. ..|.. .|......+. .+ ..+..|-|. ..|.+....|
T Consensus 56 ~~Y~~~i~iGTPpQ~~~v~~DTGSs~lWV~s~~C~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~Gs--~~G~~~~Dtv 133 (370)
T 3psg_A 56 TEYFGTIGIGTPAQDFTVIFDTGSSNLWVPSVYCSSLACSDHNQFNPDDSSTFEATSQELSITYGTGS--MTGILGYDTV 133 (370)
T ss_dssp CCEEEEEEETTTTEEEEEEEETTCCCEEEEBTTCCSGGGTTSCCBCGGGCTTCEEEEEEEEEESSSCE--EEEEEEEEEE
T ss_pred CEEEEEEEEcCCCCEEEEEEeCCCCccEEECCCCCCcccCCCCCCCCccCcCcEECCcEEEEEeCCce--EEEEEEEEEE
Confidence 3588999998 589999999999988774 34421 2332222221 11 113344443 6899988999
Q ss_pred EEcCEEEe-EEEEEecCC--------CCceeeeHHH
Q 016931 261 KIGNVFYP-CSFVVLDSP--------NMEFLFGLDM 287 (380)
Q Consensus 261 ~ig~~~~~-~~~~Vl~~~--------~~d~iLG~D~ 287 (380)
.||+..++ ..|.+.... ..|+||||-+
T Consensus 134 ~ig~~~v~~~~Fg~a~~~~~~~~~~~~~dGIlGLg~ 169 (370)
T 3psg_A 134 QVGGISDTNQIFGLSETEPGSFLYYAPFDGILGLAY 169 (370)
T ss_dssp EETTEEEEEEEEEEECSCCCGGGGGCSCSEEEECSC
T ss_pred eeCCcccCCeEEEEEEeecccccccCCccceeccCC
Confidence 99997665 566655432 3699999963
No 151
>1izd_A Aspartic proteinase; sugar binding, acid protease, hydrolase; HET: MAN; 1.90A {Aspergillus oryzae} SCOP: b.50.1.2 PDB: 1ize_A*
Probab=92.40 E-value=0.2 Score=47.71 Aligned_cols=93 Identities=14% Similarity=0.152 Sum_probs=58.6
Q ss_pred cceeEEeeeecCeeEEEEEcCCccccccC-HHHHH-HcCCccccCCc---ce------eEeecCcceeEEeEEEEEeEEE
Q 016931 194 VVMLYVDMEVNGIPLKAFVDSGAQSTIIS-KSCAE-RCGLLRLLDDR---YR------GVAHGVGQSEILGRIHVAPIKI 262 (380)
Q Consensus 194 ~~~lyv~v~Ing~~v~alVDTGA~~siIs-~~~a~-rlgL~~~~~~~---~~------~~~~gvg~~~~~g~i~~~~i~i 262 (380)
-...|+++.|.+++++++||||++.+.+. ..|.. .|.-....+.. +. .+..|-|. ...|.+....|.|
T Consensus 14 ~~~Y~~~i~iG~q~~~v~~DTGSs~lWv~~~~C~~~~c~~~~~y~~~~Ss~~~~~~~~~i~Yg~Gs-~~~G~~~~D~v~i 92 (323)
T 1izd_A 14 DEEYITQVTVGDDTLGLDFDTGSADLWVFSSQTPSSERSGHDYYTPGSSAQKIDGATWSISYGDGS-SASGDVYKDKVTV 92 (323)
T ss_dssp GCCEEEEEEETTEEEEEEEETTCCCEEECBTTSCHHHHTTCCCBCCCTTCEEEEEEEEEEECTTSC-EEEEEEEEEEEEE
T ss_pred CCEEEEEEEECCEEEEEEEcCCCcceEEecCCCCcccccCCCCCCccccCCccCCCeEEEEcCCCC-eEEEEEEEEEEEE
Confidence 34578999999999999999999999875 33422 12211111111 11 12233332 3678888889999
Q ss_pred cCEEEe-EEEEEecC--------CCCceeeeHHH
Q 016931 263 GNVFYP-CSFVVLDS--------PNMEFLFGLDM 287 (380)
Q Consensus 263 g~~~~~-~~~~Vl~~--------~~~d~iLG~D~ 287 (380)
|+..++ ..|.+... ...|+||||-+
T Consensus 93 g~~~v~~~~fg~~~~~~~~~~~~~~~~GilGLg~ 126 (323)
T 1izd_A 93 GGVSYDSQAVESAEKVSSEFTQDTANDGLLGLAF 126 (323)
T ss_dssp TTEEEEEEEEEEEEEECHHHHHCTTCCEEEECSC
T ss_pred CCEEECceEEEEEEeccccccccCCCceEEecCc
Confidence 986554 45555442 46799999865
No 152
>4aa9_A Chymosin; hydrolase, aspartic peptidase, rennet; HET: NAG; 1.60A {Camelus dromedarius} PDB: 4aa8_A 1czi_E* 1cms_A 4cms_A 3cms_A
Probab=92.31 E-value=0.6 Score=43.93 Aligned_cols=90 Identities=13% Similarity=0.323 Sum_probs=57.3
Q ss_pred eeEEeeeec--CeeEEEEEcCCccccccCH-HHH-HHcCCccccC----Ccc------eeEeecCcceeEEeEEEEEeEE
Q 016931 196 MLYVDMEVN--GIPLKAFVDSGAQSTIISK-SCA-ERCGLLRLLD----DRY------RGVAHGVGQSEILGRIHVAPIK 261 (380)
Q Consensus 196 ~lyv~v~In--g~~v~alVDTGA~~siIs~-~~a-~rlgL~~~~~----~~~------~~~~~gvg~~~~~g~i~~~~i~ 261 (380)
..|+++.|. .+++++++|||++.+.+.. .|. ..|.-....+ ..+ ..+..|-|. ..|.+....+.
T Consensus 12 ~Y~~~i~iGtP~Q~~~v~~DTGSs~~Wv~~~~C~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~gs--~~G~~~~D~v~ 89 (320)
T 4aa9_A 12 QYFGKIYIGTPPQEFTVVFDTGSSDLWVPSIYCKSNVCKNHHRFDPRKSSTFRNLGKPLSIHYGTGS--MEGFLGYDTVT 89 (320)
T ss_dssp CCEEEEEETTTTEEEEEEEETTCCCEEEEBTTCCSHHHHTSCCBCGGGCTTCEEEEEEEEEEETTEE--EEEEEEEEEEE
T ss_pred EEEEEEEECCCCeEEEEEEeCCCCceEEcCCCCCccccCCCCCCCCCCCcCeEcCCcEEEEEECCcE--EEEEEEEEEEE
Confidence 578999998 6899999999999988843 332 1222111111 111 123344443 58999899999
Q ss_pred EcCEEEe-EEEEEecC--------CCCceeeeHHH
Q 016931 262 IGNVFYP-CSFVVLDS--------PNMEFLFGLDM 287 (380)
Q Consensus 262 ig~~~~~-~~~~Vl~~--------~~~d~iLG~D~ 287 (380)
||+..++ ..|.+... ...|+||||-+
T Consensus 90 ig~~~v~~~~fg~~~~~~~~~~~~~~~~GilGLg~ 124 (320)
T 4aa9_A 90 VSNIVDPNQTVGLSTEQPGEVFTYSEFDGILGLAY 124 (320)
T ss_dssp ETTEEEEEEEEEEEEECCSHHHHSCCCSEEEECSC
T ss_pred ECCEeecCeEEEEEEEcccccccccCcccEEecCc
Confidence 9996654 45555442 23689999963
No 153
>1ibq_A Aspergillopepsin; aspartic proteinase, hydrolase; HET: MAN; 2.14A {Aspergillus phoenicis} SCOP: b.50.1.2
Probab=92.18 E-value=0.32 Score=46.21 Aligned_cols=92 Identities=14% Similarity=0.119 Sum_probs=57.7
Q ss_pred ceeEEeeeecCeeEEEEEcCCccccccC-HHHHH-HcCCccccCC---------cceeEeecCcceeEEeEEEEEeEEEc
Q 016931 195 VMLYVDMEVNGIPLKAFVDSGAQSTIIS-KSCAE-RCGLLRLLDD---------RYRGVAHGVGQSEILGRIHVAPIKIG 263 (380)
Q Consensus 195 ~~lyv~v~Ing~~v~alVDTGA~~siIs-~~~a~-rlgL~~~~~~---------~~~~~~~gvg~~~~~g~i~~~~i~ig 263 (380)
...|+++.|.++++++++|||++.+.+. ..|.. .|.-....+. ....+..|-|. ...|.+....|.||
T Consensus 14 ~~Y~~~i~iG~Q~~~v~~DTGSs~lWv~~~~C~~~~c~~~~~y~~~~Ss~~~~~~~~~i~Yg~Gs-~~~G~~~~D~v~ig 92 (325)
T 1ibq_A 14 EEYLTPVTVGKSTLHLDFDTGSADLWVFSDELPSSEQTGHDLYTPSSSATKLSGYSWDISYGDGS-SASGDVYRDTVTVG 92 (325)
T ss_dssp SCEEEEEEEBTEEEEEEEETTCCCEEEECTTSCHHHHTTSCCCBCCSSCEECTTCBEEEECSSSC-EEEEEEEEEEEEET
T ss_pred CEEEEEEEECCEEEEEEEeCCCccceEeeCCCCccccCCCCCCCchhcCCccCCCEEEEEeCCCC-EEEEEEEEeEEEEC
Confidence 4578999999999999999999998774 44422 1211111111 11123333332 36788888899999
Q ss_pred CEEEe-EEEEEecC--------CCCceeeeHHH
Q 016931 264 NVFYP-CSFVVLDS--------PNMEFLFGLDM 287 (380)
Q Consensus 264 ~~~~~-~~~~Vl~~--------~~~d~iLG~D~ 287 (380)
+..++ ..|.+... ...|+||||-+
T Consensus 93 ~~~v~~~~fg~~~~~~~~~~~~~~~~GilGLg~ 125 (325)
T 1ibq_A 93 GVTTNKQAVEAASKISSEFVQDTANDGLLGLAF 125 (325)
T ss_dssp TEEEEEEEEEEEEEECHHHHTSTTCCEEEECSC
T ss_pred CEEEcceEEEEEEecCccccccCCCceEEEeCc
Confidence 86554 44544432 36799999855
No 154
>1mpp_A Pepsin; hydrolase(acid proteinase); 2.00A {Rhizomucor pusillus} SCOP: b.50.1.2 PDB: 2asi_A* 2rmp_A*
Probab=92.09 E-value=0.36 Score=46.43 Aligned_cols=91 Identities=20% Similarity=0.359 Sum_probs=58.9
Q ss_pred ceeEEeeeec--CeeEEEEEcCCcccccc-CHHHH--HHcCCccccCCc----c------eeEeecCcceeEEeEEEEEe
Q 016931 195 VMLYVDMEVN--GIPLKAFVDSGAQSTII-SKSCA--ERCGLLRLLDDR----Y------RGVAHGVGQSEILGRIHVAP 259 (380)
Q Consensus 195 ~~lyv~v~In--g~~v~alVDTGA~~siI-s~~~a--~rlgL~~~~~~~----~------~~~~~gvg~~~~~g~i~~~~ 259 (380)
...|+++.|. +++++++||||++.+.+ +..|. ..|.-....+.. + ..+..|-|. ..|.+....
T Consensus 18 ~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~Gs--~~G~~~~D~ 95 (361)
T 1mpp_A 18 EEYAIPVSIGTPGQDFYLLFDTGSSDTWVPHKGCDNSEGCVGKRFFDPSSSSTFKETDYNLNITYGTGG--ANGIYFRDS 95 (361)
T ss_dssp TEEEEEEEETTTTEEEEEEEETTCCCCEEEBTTCCGGGTCCSSCCBCGGGCTTCEEEEEEEEEECSSCE--EEEEEEEEE
T ss_pred CEEEEEEEECCCCcEEEEEEcCCCCCeEECCCCCCCCccCCCCCcCCCccCCceEecCCeEEEEECCce--EEEEEEEEE
Confidence 3578899998 89999999999999977 44453 245432222211 1 123344444 578888889
Q ss_pred EEEcCEEEe-EEEEEec-------------CCCCceeeeHHH
Q 016931 260 IKIGNVFYP-CSFVVLD-------------SPNMEFLFGLDM 287 (380)
Q Consensus 260 i~ig~~~~~-~~~~Vl~-------------~~~~d~iLG~D~ 287 (380)
|.||+..++ ..|.+.. ....|+||||-+
T Consensus 96 v~~g~~~v~~~~fg~~~~~~~~~~~~~~~~~~~~~GilGLg~ 137 (361)
T 1mpp_A 96 ITVGGATVKQQTLAYVDNVSGPTAEQSPDSELFLDGIFGAAY 137 (361)
T ss_dssp EEETTEEEEEEEEEEEEEEESGGGSSCTTCSSCCCEEEECSC
T ss_pred EEECCEEEeceEEEEEEeccCccccccccccCCCCCEEEeCC
Confidence 999985544 3444433 135799999864
No 155
>2r2o_A Plexin-B1; effector domain, structural genomics, structural GEN consortium, SGC, glycoprotein, membrane, phosphorylation, R secreted, transmembrane; 2.00A {Homo sapiens} PDB: 2rex_A* 2jph_A
Probab=91.82 E-value=0.55 Score=39.39 Aligned_cols=63 Identities=21% Similarity=0.277 Sum_probs=46.4
Q ss_pred CEEEEEeCCCCCHHHHHHHHHHHh--CCCC------cCeEEec----CCe-ecCCc-------------ccchhcCCCCC
Q 016931 11 QIISLDVDPHETVENVKALLEVET--QVPL------QQQQLLY----NGR-EMNNA-------------EKLSALGVKDE 64 (380)
Q Consensus 11 ~~~~i~V~~~~TV~~LK~~I~~~~--gip~------~~q~Li~----~Gk-~L~D~-------------~tL~~~gI~dg 64 (380)
..+.+.|-..+||.++|++|-... |+|- ++.-|-+ .|+ +|.|. .||+.|+|.||
T Consensus 41 ~~i~VkVLdCDTItQvKeKiLDavYk~~PySqRP~~~d~dLEwr~g~~g~liL~D~D~tS~~~~~wkrLNTL~HY~V~Dg 120 (138)
T 2r2o_A 41 QGVPVKVLDCDTISQAKEKMLDQLYKGVPLTQRPDPRTLDVEWRSGVAGHLILSDEDVTSEVQGLWRRLNTLQHYKVPDG 120 (138)
T ss_dssp CCEEEEEETTCBHHHHHHHHHHHHTTTSCGGGCCCGGGEEEEEECSSSCEEEECSSSTTCCEETTEEECCBHHHHTCCTT
T ss_pred CceeEEEeccccHHHHHHHHHHHHHcCCccccCCCccceeEEEecCCcCceEeeccCCcccccCCceeecchhccCCCCC
Confidence 457888889999999999998775 4443 3445554 243 36652 28999999999
Q ss_pred cEEEEeecC
Q 016931 65 DLVMMVSNA 73 (380)
Q Consensus 65 ~~I~l~~~~ 73 (380)
.+|-++.+.
T Consensus 121 a~l~l~~~~ 129 (138)
T 2r2o_A 121 ATVALVPCL 129 (138)
T ss_dssp CEEEEEEC-
T ss_pred CEEEEEECC
Confidence 999998764
No 156
>1dpj_A Proteinase A; proteinase A, hydrolase-hydrolase inhibitor COM; HET: BMA MAN NAG; 1.80A {Saccharomyces cerevisiae} SCOP: b.50.1.2 PDB: 1dp5_A* 1fmu_A* 1fmx_A* 1fq5_A* 1fq4_A* 1fq6_A* 1fq7_A* 1fq8_A* 2jxr_A* 1g0v_A*
Probab=91.76 E-value=0.43 Score=45.27 Aligned_cols=91 Identities=22% Similarity=0.441 Sum_probs=58.1
Q ss_pred ceeEEeeeec--CeeEEEEEcCCccccccC-HHHHH-HcCCccccCC----cc------eeEeecCcceeEEeEEEEEeE
Q 016931 195 VMLYVDMEVN--GIPLKAFVDSGAQSTIIS-KSCAE-RCGLLRLLDD----RY------RGVAHGVGQSEILGRIHVAPI 260 (380)
Q Consensus 195 ~~lyv~v~In--g~~v~alVDTGA~~siIs-~~~a~-rlgL~~~~~~----~~------~~~~~gvg~~~~~g~i~~~~i 260 (380)
...|+++.|. ++++++++|||++.+.+. ..|.. .|.-....+. .+ ..+..|-| ...|.+....|
T Consensus 13 ~~Y~~~i~iGtP~q~~~v~~DTGSs~lWv~~~~C~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~G--s~~G~~~~D~v 90 (329)
T 1dpj_A 13 AQYYTDITLGTPPQNFKVILDTGSSNLWVPSNECGSLACFLHSKYDHEASSSYKANGTEFAIQYGTG--SLEGYISQDTL 90 (329)
T ss_dssp TEEEEEEEETTTTEEEEEEEETTCCCEEEEBTTCCSHHHHTSCCBCGGGCTTCEEEEEEEEEEETTE--EEEEEEEEEEE
T ss_pred CEEEEEEEECCCCcEEEEEEeCCCcCeEEecCCCCCcccCCcCcCCcccCcCeEECCcEEEEEECCc--eEEEEEEEEEE
Confidence 3578999998 799999999999998773 44432 2321111211 11 12344544 46798988899
Q ss_pred EEcCEEEe-EEEEEec--------CCCCceeeeHHH
Q 016931 261 KIGNVFYP-CSFVVLD--------SPNMEFLFGLDM 287 (380)
Q Consensus 261 ~ig~~~~~-~~~~Vl~--------~~~~d~iLG~D~ 287 (380)
.||+..++ ..|.+.. ....|+||||-+
T Consensus 91 ~ig~~~~~~~~fg~~~~~~~~~f~~~~~~GilGLg~ 126 (329)
T 1dpj_A 91 SIGDLTIPKQDFAEATSEPGLTFAFGKFDGILGLGY 126 (329)
T ss_dssp EETTEEEEEEEEEEEEECCHHHHTTCSCSEEEECSC
T ss_pred EECCeEECCeEEEEEEecCccccccCCcceEEEeCC
Confidence 99986554 4454443 235799999864
No 157
>1wkr_A Polyporopepsin; hydrolase, hydrolase-hydrolase inhibitor complex; HET: STA; 1.30A {Irpex lacteus} SCOP: b.50.1.2
Probab=91.66 E-value=0.33 Score=46.29 Aligned_cols=86 Identities=17% Similarity=0.241 Sum_probs=55.8
Q ss_pred eeEEeeeec--CeeEEEEEcCCccccccCHHHHHHcCCccccCCcc----eeEeecCcceeEEeEEEEEeEEEcCEEEe-
Q 016931 196 MLYVDMEVN--GIPLKAFVDSGAQSTIISKSCAERCGLLRLLDDRY----RGVAHGVGQSEILGRIHVAPIKIGNVFYP- 268 (380)
Q Consensus 196 ~lyv~v~In--g~~v~alVDTGA~~siIs~~~a~rlgL~~~~~~~~----~~~~~gvg~~~~~g~i~~~~i~ig~~~~~- 268 (380)
..|+++.|. +++++++||||++.+-+... .+..- ...... ..+..|-|. ..|.+....|.||+..++
T Consensus 13 ~Y~~~i~iGTP~q~~~v~~DTGSs~lWv~~~--~~y~~--s~Ss~~~~~~~~i~Yg~Gs--~~G~~~~Dtv~~g~~~v~~ 86 (340)
T 1wkr_A 13 DYVVNVGVGSPATTYSLLVDTGSSNTWLGAD--KSYVK--TSTSSATSDKVSVTYGSGS--FSGTEYTDTVTLGSLTIPK 86 (340)
T ss_dssp CEEEEEEETTTTEEEEEEEETTCCCCEECSS--SCCCC--CTTCEEEEEEEEEECSSCE--EEEEEEEEEEEETTEEEEE
T ss_pred EEEEEEEECCCCcEEEEEEeCCChhheecCC--CccCC--cCCccccCceEEEEECCcE--EEEEEEEEEEEECCEEEcc
Confidence 578999998 89999999999999987532 11111 000011 123445454 679999999999985543
Q ss_pred EEEEEecC----CCCceeeeHHH
Q 016931 269 CSFVVLDS----PNMEFLFGLDM 287 (380)
Q Consensus 269 ~~~~Vl~~----~~~d~iLG~D~ 287 (380)
..|.+... ...|+||||-+
T Consensus 87 ~~fg~~~~~~~~~~~~GilGLg~ 109 (340)
T 1wkr_A 87 QSIGVASRDSGFDGVDGILGVGP 109 (340)
T ss_dssp EEEEEEEEEESCTTCSEEEECSC
T ss_pred eEEEEEEccCCCcCCCcEEECCc
Confidence 44444432 25799999864
No 158
>3jyu_A Ubiquitin carboxyl-terminal hydrolase; domain in ubiquitin-specific peptidases (DUSP), proto- oncogene, ubiquitin-fold, UBL, protease, thioesterase; HET: 1PS; 2.37A {Mus musculus}
Probab=91.59 E-value=0.35 Score=44.13 Aligned_cols=61 Identities=8% Similarity=0.262 Sum_probs=50.3
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHhCCCCc-CeEEec-CC----eecCC-cccchhcCCCCCcEEEEeec
Q 016931 12 IISLDVDPHETVENVKALLEVETQVPLQ-QQQLLY-NG----REMNN-AEKLSALGVKDEDLVMMVSN 72 (380)
Q Consensus 12 ~~~i~V~~~~TV~~LK~~I~~~~gip~~-~q~Li~-~G----k~L~D-~~tL~~~gI~dg~~I~l~~~ 72 (380)
.+++.++...|+.+|++.+...++++++ ..||.. .+ ..|.| +.||.++++.+|+.|.+-.+
T Consensus 153 ~~~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RLW~~~~~~~~~~L~~~~~tl~d~~L~~~Q~illE~r 220 (231)
T 3jyu_A 153 VLSCHFSKADTIATIEKEMRKLFNIPAERETRLWNKYMSNTYEQLSKLDNTIQDAGLYQGQVLVIEPQ 220 (231)
T ss_dssp EEEEEECTTCBHHHHHHHHHHHTTCCTTSCEEEEECSSSSSCEECCCTTSBTTTTTCCTTEEEEEEEC
T ss_pred eEEEEecccCcHHHHHHHHHHHhCCCCCCeEEEEEecCCCCHhhhcCCCCCHHHhCCCCCCEEEEEEe
Confidence 3567789999999999999999999997 688873 32 34665 48999999999999988654
No 159
>3c9x_A Trichoderma reesei aspartic protease; aspartic proteinase, aspartyl protease, hydrolase; 1.70A {Trichoderma reesei} PDB: 3c9y_A* 3emy_A*
Probab=91.50 E-value=0.49 Score=44.96 Aligned_cols=92 Identities=12% Similarity=0.112 Sum_probs=57.3
Q ss_pred ceeEEeeeec--CeeEEEEEcCCccccccCH-HHHH-HcCCccccCC-----------cceeEeecCcceeEEeEEEEEe
Q 016931 195 VMLYVDMEVN--GIPLKAFVDSGAQSTIISK-SCAE-RCGLLRLLDD-----------RYRGVAHGVGQSEILGRIHVAP 259 (380)
Q Consensus 195 ~~lyv~v~In--g~~v~alVDTGA~~siIs~-~~a~-rlgL~~~~~~-----------~~~~~~~gvg~~~~~g~i~~~~ 259 (380)
...|+++.|. +++++++||||++.+.+.. .|.. .|.-....+. ....+..|-|. ...|.+....
T Consensus 15 ~~Y~~~i~iGTP~Q~~~v~~DTGSs~lWv~~~~C~~~~~~~~~~y~~~~SsT~~~~~~~~~~i~Yg~Gs-~~~G~~~~D~ 93 (329)
T 3c9x_A 15 SEYITSVSIGTPAQVLPLDFDTGSSDLWVFSSETPKSSATGHAIYTPSKSSTSKKVSGASWSISYGDGS-SSSGDVYTDK 93 (329)
T ss_dssp CCEEEEEEETTTTEEEEEEEETTCCCEEECBTTSCHHHHTTSCCBCGGGCTTCEECTTCBEEEECTTSC-EEEEEEEEEE
T ss_pred CEEEEEEEECCCCeEEEEEEcCCCCCeEEecCCCCccccCCCCcCCcccCcCceEcCCCeEEEEeCCCC-cEEEEEEEEE
Confidence 3568899998 8999999999999998753 3321 1111111111 11123334332 3678888889
Q ss_pred EEEcCEEEe-EEEEEecC--------CCCceeeeHHH
Q 016931 260 IKIGNVFYP-CSFVVLDS--------PNMEFLFGLDM 287 (380)
Q Consensus 260 i~ig~~~~~-~~~~Vl~~--------~~~d~iLG~D~ 287 (380)
|.||+..++ ..|.+... ...|+||||-+
T Consensus 94 v~ig~~~v~~~~fg~~~~~~~~~~~~~~~~GilGLg~ 130 (329)
T 3c9x_A 94 VTIGGFSVNTQGVESATRVSTEFVQDTVISGLVGLAF 130 (329)
T ss_dssp EEETTEEEEEEEEEEEEEECHHHHHCTTCCEEEECSC
T ss_pred EEECCEEEcceEEEEEEecCccccccCCCceeEEeCc
Confidence 999986554 34544431 46799999865
No 160
>4a3p_A Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {Homo sapiens} PDB: 4a3o_A 3pv1_A 3ppa_A* 3t9l_A 3lmn_A
Probab=91.43 E-value=0.34 Score=43.76 Aligned_cols=61 Identities=10% Similarity=0.333 Sum_probs=50.1
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHhCCCCc-CeEEe--c-CC--eecCC-cccchhcCCCCCcEEEEeec
Q 016931 12 IISLDVDPHETVENVKALLEVETQVPLQ-QQQLL--Y-NG--REMNN-AEKLSALGVKDEDLVMMVSN 72 (380)
Q Consensus 12 ~~~i~V~~~~TV~~LK~~I~~~~gip~~-~q~Li--~-~G--k~L~D-~~tL~~~gI~dg~~I~l~~~ 72 (380)
.+++.++...|+.+|++.+...++++++ ..||. + .+ ..|.| +.||.++++.+|..|.+-.+
T Consensus 141 ~~~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RlW~~~~~~~~~~L~~~~~tl~~~~l~~~Q~illE~r 208 (217)
T 4a3p_A 141 VVTRRFSKADTIDTIEKEIRKIFSIPDEKETRLWNKYMSNTFEPLNKPDSTIQDAGLYQGQVLVIEQK 208 (217)
T ss_dssp EEEEEECTTSBHHHHHHHHHHHTTCCTTSCEEEEEEEETTEEEECCCTTSBHHHHTCCTTCEEEEEEC
T ss_pred ceEEEEcccchHHHHHHHHHHHhCCCCCCceEEEEecCCCCeeecCCCCCCHHHhCCCCCCEEEEEEe
Confidence 3667889999999999999999999997 68887 2 22 34665 47999999999999988644
No 161
>1htr_B Gastricsin; aspartyl protease; 1.62A {Homo sapiens} SCOP: b.50.1.2 PDB: 1avf_A
Probab=90.79 E-value=1.3 Score=41.86 Aligned_cols=91 Identities=13% Similarity=0.337 Sum_probs=58.5
Q ss_pred ceeEEeeeec--CeeEEEEEcCCccccccC-HHHH-HHcCCccccCC----cc------eeEeecCcceeEEeEEEEEeE
Q 016931 195 VMLYVDMEVN--GIPLKAFVDSGAQSTIIS-KSCA-ERCGLLRLLDD----RY------RGVAHGVGQSEILGRIHVAPI 260 (380)
Q Consensus 195 ~~lyv~v~In--g~~v~alVDTGA~~siIs-~~~a-~rlgL~~~~~~----~~------~~~~~gvg~~~~~g~i~~~~i 260 (380)
...|+++.|. +++++++||||++.+.+. ..|. ..|+-....+. .+ ..+..|-|. ..|.+....|
T Consensus 12 ~~Y~~~i~iGtP~q~~~v~~DTGSs~lWv~~~~C~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~gs--~~G~~~~D~v 89 (329)
T 1htr_B 12 AAYFGEISIGTPPQNFLVLFDTGSSNLWVPSVYCQSQACTSHSRFNPSESSTYSTNGQTFSLQYGSGS--LTGFFGYDTL 89 (329)
T ss_dssp CCEEEEEEETTTTEEEEEEEETTCCCEEEEBTTCCSHHHHTSCCBCGGGCTTCEEEEEEEEEEETTEE--EEEEEEEEEE
T ss_pred CEEEEEEEECCCCcEEEEEEcCCCccEEEecCCCCCcccCCCCcCCCccCCCeEECCcEEEEEeCCCC--eEEEEEeeeE
Confidence 4578999998 789999999999998774 4442 12322111211 11 113344443 4788888899
Q ss_pred EEcCEEEe-EEEEEecC--------CCCceeeeHHH
Q 016931 261 KIGNVFYP-CSFVVLDS--------PNMEFLFGLDM 287 (380)
Q Consensus 261 ~ig~~~~~-~~~~Vl~~--------~~~d~iLG~D~ 287 (380)
.+|+..++ ..|.+... ...|+||||-+
T Consensus 90 ~~g~~~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~ 125 (329)
T 1htr_B 90 TVQSIQVPNQEFGLSENEPGTNFVYAQFDGIMGLAY 125 (329)
T ss_dssp EETTEEEEEEEEEEESSCSSGGGGGCSCCEEEECCC
T ss_pred EEcceEECceEEEEEEEccccccccCCCceEEecCC
Confidence 99996655 56666553 24689999853
No 162
>3fv3_A SAPP1P-secreted aspartic protease 1; secreted aspartic protease, virulence factor, H; HET: STA; 1.85A {Candida parapsilosis} SCOP: b.50.1.0 PDB: 3tne_A*
Probab=90.53 E-value=0.35 Score=46.00 Aligned_cols=92 Identities=15% Similarity=0.239 Sum_probs=59.6
Q ss_pred ceeEEeeeec--CeeEEEEEcCCccccccCHH---HHH--HcCCccccCC----cce------eEeecCcceeEEeEEEE
Q 016931 195 VMLYVDMEVN--GIPLKAFVDSGAQSTIISKS---CAE--RCGLLRLLDD----RYR------GVAHGVGQSEILGRIHV 257 (380)
Q Consensus 195 ~~lyv~v~In--g~~v~alVDTGA~~siIs~~---~a~--rlgL~~~~~~----~~~------~~~~gvg~~~~~g~i~~ 257 (380)
...|+++.|. ++++++++|||++.+.+... |.. .|.-....+. .+. .+..|-| ....|.+..
T Consensus 12 ~~Y~~~i~iGtP~Q~~~v~~DTGSs~~Wv~~~~~~C~~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~g-s~~~G~~~~ 90 (339)
T 3fv3_A 12 PSYASKVSVGSNKQQQTVIIDTGSSDFWVVDSNAQCGKGVDCKSSGTFTPSSSSSYKNLGAAFTIRYGDG-STSQGTWGK 90 (339)
T ss_dssp SSEEEEEEETTTTEEEEEEEETTCCCEEEEEEEEEECTTCCTTTTCCBCGGGCTTCEEEEEEEEEECTTS-CEEEEEEEE
T ss_pred CEEEEEEEEcCCCcEEEEEEeCCCCceEEecCCCCCCCCCCCCCCCcCCCccCcceeeCCceEEEEECCC-ceEEEEEEE
Confidence 3578999998 79999999999999988533 432 1221111211 111 1223333 267888989
Q ss_pred EeEEEcCEEEe-EEEEEec-CCCCceeeeHHH
Q 016931 258 APIKIGNVFYP-CSFVVLD-SPNMEFLFGLDM 287 (380)
Q Consensus 258 ~~i~ig~~~~~-~~~~Vl~-~~~~d~iLG~D~ 287 (380)
..|.||+..++ ..|.+.. ....|+||||-+
T Consensus 91 D~v~~g~~~v~~~~fg~~~~~~~~~GilGLg~ 122 (339)
T 3fv3_A 91 DTVTINGVSITGQQIADVTQTSVDQGILGIGY 122 (339)
T ss_dssp EEEEETTEEEEEEEEEEEEEESSSSCEEECSC
T ss_pred EEEEECCEEECceEEEEEEecCCCceeEEecC
Confidence 99999996665 4555554 235799999865
No 163
>1oew_A Endothiapepsin; hydrolase, aspartic proteinase mechanism, atomic resolution, succinimide, anisotropic refinement; HET: SUI; 0.9A {Cryphonectria parasitica} SCOP: b.50.1.2 PDB: 1gkt_A* 1gvt_A* 1gvv_A* 1gvw_A* 1gvx_A* 1gvu_A* 1oex_A* 2jji_A* 2jjj_A* 2vs2_A* 3uri_A* 3urj_A* 3url_A* 3pww_A* 1e80_E* 1e81_E* 1e82_E* 1e5o_E* 1eed_P* 1epl_E* ...
Probab=90.48 E-value=0.53 Score=44.72 Aligned_cols=91 Identities=11% Similarity=0.204 Sum_probs=57.5
Q ss_pred ceeEEeeeec--CeeEEEEEcCCccccccCH-HHHHHcCC-ccccCC----cce-------eEeecCcceeEEeEEEEEe
Q 016931 195 VMLYVDMEVN--GIPLKAFVDSGAQSTIISK-SCAERCGL-LRLLDD----RYR-------GVAHGVGQSEILGRIHVAP 259 (380)
Q Consensus 195 ~~lyv~v~In--g~~v~alVDTGA~~siIs~-~~a~rlgL-~~~~~~----~~~-------~~~~gvg~~~~~g~i~~~~ 259 (380)
...|+++.|. +++++++||||++.+.+.. .|. .|.. ....+. .+. .+..|-|. ...|.+....
T Consensus 15 ~~Y~~~i~iGTP~Q~~~v~~DTGSs~lWv~~~~C~-~~~~~~~~y~~~~SsT~~~~~~~~~~i~Yg~Gs-~~~G~~~~D~ 92 (329)
T 1oew_A 15 DAYITPVQIGTPAQTLNLDFDTGSSDLWVFSSETT-ASEVXQTIYTPSKSTTAKLLSGATWSISYGDGS-SSSGDVYTDT 92 (329)
T ss_dssp CCEEEEEEETTTTEEEEEEEETTCCCEEECBTTSC-GGGC-CCCBCGGGCTTCEEEEEEEEEEECTTSC-EEEEEEEEEE
T ss_pred CEEEEEEEECCCCeEEEEEECCCCCCeEEecCCCC-ccccccCccCCccCccceecCCCeEEEEeCCCC-cEEEEEEEEE
Confidence 3568999998 8999999999999998753 332 2321 111111 111 12233332 3678888889
Q ss_pred EEEcCEEEe-EEEEEecC--------CCCceeeeHHH
Q 016931 260 IKIGNVFYP-CSFVVLDS--------PNMEFLFGLDM 287 (380)
Q Consensus 260 i~ig~~~~~-~~~~Vl~~--------~~~d~iLG~D~ 287 (380)
|.+|+..++ ..|.+... ...|+||||-+
T Consensus 93 v~~g~~~v~~~~fg~~~~~~~~~~~~~~~~GilGLg~ 129 (329)
T 1oew_A 93 VSVGGLTVTGQAVESAKKVSSSFTEDSTIDGLLGLAF 129 (329)
T ss_dssp EEETTEEEEEEEEEEEEEECHHHHHCTTCCEEEECSC
T ss_pred EEECCEEEeeeEEEEEEecCccccccCCCceEEEecc
Confidence 999986554 44544432 46799999865
No 164
>3qvc_A Histo-aspartic protease; HAP, plasmepsin, zymogen, hydrolase; 2.10A {Plasmodium falciparum} PDB: 3qvi_A* 3fns_A 3fnt_A* 3fnu_A*
Probab=90.37 E-value=1.1 Score=44.78 Aligned_cols=103 Identities=9% Similarity=0.063 Sum_probs=61.5
Q ss_pred eeecCe---eEEEEEcCCccccccCHHHHHHcCCccccCCcceeEeecCcceeE-EeEEEEEeEEEcCEEEeE-------
Q 016931 201 MEVNGI---PLKAFVDSGAQSTIISKSCAERCGLLRLLDDRYRGVAHGVGQSEI-LGRIHVAPIKIGNVFYPC------- 269 (380)
Q Consensus 201 v~Ing~---~v~alVDTGA~~siIs~~~a~rlgL~~~~~~~~~~~~~gvg~~~~-~g~i~~~~i~ig~~~~~~------- 269 (380)
+.|+|. ...++||||.+.+.++.+.++++--. +..... ...|.-...+ ........+.+|+..+.+
T Consensus 322 I~Vgg~~~~~~~aiiDSGTt~i~lP~~~~~~i~~~--i~a~~~-~~~g~y~v~C~~~~~P~itf~fgg~~i~lp~~~yi~ 398 (451)
T 3qvc_A 322 VHFGNVSSKKANVILDSATSVITVPTEFFNQFVES--ASVFKV-PFLSLYVTTCGNTKLPTLEYRSPNKVYTLEPKQYLE 398 (451)
T ss_dssp EEETTEEEEEEEEEECTTBSSEEECHHHHHHHHTT--TTCEEC-TTSSCEEEETTCTTCCCEEEEETTEEEEECHHHHEE
T ss_pred EEECCccCCCceEEEeCCCccccCCHHHHHHHHHH--cCCeec-CCCCeEEeeCCcCcCCcEEEEECCEEEEEcHHHhee
Confidence 566764 57899999999999999998876320 000000 0001000011 011223455566644433
Q ss_pred ----------EEEEecCC--CCceeeeHHHHhhcCeEEEcCCCEEEEcC
Q 016931 270 ----------SFVVLDSP--NMEFLFGLDMLRKHQCIIDLKENVLRVGG 306 (380)
Q Consensus 270 ----------~~~Vl~~~--~~d~iLG~D~L~~~~~~ID~~~~~l~i~~ 306 (380)
-+.+.... ....|||..||+.+-.+.|+.++++-|..
T Consensus 399 ~~~~~~~~~C~~~i~~~~~~~~~~ILG~~FLr~~YvVfD~~n~rIGfA~ 447 (451)
T 3qvc_A 399 PLENIFSALCMLNIVPIDLEKNTFVLGDPFMRKYFTVYDYDNHTVGFAL 447 (451)
T ss_dssp ECTTTSTTEEEECEEECCCSTTEEEECHHHHHHEEEEEETTTTEEEEEE
T ss_pred ecccCCCCeEEEEEEeCCCCCCCEEECHHHhhcEEEEEECCCCEEEEEE
Confidence 22222222 34689999999999999999999998863
No 165
>3pvk_A Candidapepsin-2; hydrolase; 1.27A {Candida albicans} SCOP: b.50.1.2 PDB: 1eag_A 3q70_A* 1zap_A* 2qzw_A 2h6t_A* 2h6s_A*
Probab=90.36 E-value=0.39 Score=45.64 Aligned_cols=92 Identities=20% Similarity=0.304 Sum_probs=58.8
Q ss_pred ceeEEeeeec--CeeEEEEEcCCccccccCHH---HH--------HHcCCccccCC----cce------eEeecCcceeE
Q 016931 195 VMLYVDMEVN--GIPLKAFVDSGAQSTIISKS---CA--------ERCGLLRLLDD----RYR------GVAHGVGQSEI 251 (380)
Q Consensus 195 ~~lyv~v~In--g~~v~alVDTGA~~siIs~~---~a--------~rlgL~~~~~~----~~~------~~~~gvg~~~~ 251 (380)
...|+++.|. .+++++++|||++.+.+... |. ..|.-....+. .+. .+..|-| ...
T Consensus 12 ~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~~~C~~~~~~~~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~g-s~~ 90 (342)
T 3pvk_A 12 VTYAADITVGSNNQKLNVIVDTGSSDLWVPDVNVDCQVTYSDQTADFCKQKGTYDPSGSSASQDLNTPFKIGYGDG-SSS 90 (342)
T ss_dssp SSEEEEEEETTTTEEEEEEEETTCCCEEEEEEEEEECCCSTTCCTTGGGTTCCBCGGGCTTCEEEEEEEEEECSSS-CEE
T ss_pred cEEEEEEEEcCCCcEEEEEEECCCcceEEEcCCCCCcccccccccCCCCCCCcCCCccCcceeecCCeEEEEecCC-CeE
Confidence 3578999998 79999999999999988432 41 22321111111 111 1223333 247
Q ss_pred EeEEEEEeEEEcCEEEe-EEEEEec-CCCCceeeeHHH
Q 016931 252 LGRIHVAPIKIGNVFYP-CSFVVLD-SPNMEFLFGLDM 287 (380)
Q Consensus 252 ~g~i~~~~i~ig~~~~~-~~~~Vl~-~~~~d~iLG~D~ 287 (380)
.|.+....|.||+..++ ..|.+.. ....|+||||-+
T Consensus 91 ~G~~~~D~v~ig~~~v~~~~fg~~~~~~~~~GilGLg~ 128 (342)
T 3pvk_A 91 QGTLYKDTVGFGGVSIKNQVLADVDSTSIDQGILGVGY 128 (342)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEEEESSSSCEEECSC
T ss_pred EEEEEEEEEEECCEEecceEEEEEEccCCCccEEEecC
Confidence 78888899999996655 4555554 236799999974
No 166
>1qdm_A Prophytepsin; aspartic proteinases, saposin-like domain, zymogen structure, hydrolase; 2.30A {Hordeum vulgare} SCOP: a.64.1.2 b.50.1.2
Probab=90.22 E-value=0.68 Score=46.72 Aligned_cols=91 Identities=16% Similarity=0.354 Sum_probs=58.2
Q ss_pred ceeEEeeeec--CeeEEEEEcCCcccccc-CHHHH--HHcCCccccCC----------cceeEeecCcceeEEeEEEEEe
Q 016931 195 VMLYVDMEVN--GIPLKAFVDSGAQSTII-SKSCA--ERCGLLRLLDD----------RYRGVAHGVGQSEILGRIHVAP 259 (380)
Q Consensus 195 ~~lyv~v~In--g~~v~alVDTGA~~siI-s~~~a--~rlgL~~~~~~----------~~~~~~~gvg~~~~~g~i~~~~ 259 (380)
...|+++.|+ ++++.+++|||++.+-+ +..|. ..|......+. ....+..|-|. ..|.+....
T Consensus 52 ~~Y~~~i~IGTP~Q~~~v~~DTGSs~lWV~~~~C~~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~Gs--~~G~~~~Dt 129 (478)
T 1qdm_A 52 AQYFGEIGVGTPPQKFTVIFDTGSSNLWVPSAKCYFSIACYLHSRYKAGASSTYKKNGKPAAIQYGTGS--IAGYFSEDS 129 (478)
T ss_dssp CCEEEEEEETTTTEEEEEEEETTCCCCEEEBTTCCSCGGGGGSCCBCGGGCTTCBCCCCEEEEEETTEE--EEEEEEEEE
T ss_pred CEEEEEEEECCCCeEEEEEEcCCCcceEEecCCCCCCccccCCCCCCcccCCCeeeCCcEEEEEcCCCC--eEEEEEEEE
Confidence 4578999998 79999999999999887 34442 23432111111 11123455443 679998899
Q ss_pred EEEcCEEEe-EEEEEecC--------CCCceeeeHHH
Q 016931 260 IKIGNVFYP-CSFVVLDS--------PNMEFLFGLDM 287 (380)
Q Consensus 260 i~ig~~~~~-~~~~Vl~~--------~~~d~iLG~D~ 287 (380)
|.||+..++ ..|.+... ...|+||||-+
T Consensus 130 v~ig~~~v~~~~Fg~a~~~~~~~f~~~~~dGIlGLg~ 166 (478)
T 1qdm_A 130 VTVGDLVVKDQEFIEATKEPGITFLVAKFDGILGLGF 166 (478)
T ss_dssp EEETTEEEEEEEEEEEEECCBSHHHHCSSSEEEECSC
T ss_pred EEECCeEECCEEEEEEEecCCcccccccccceecccc
Confidence 999996554 34444321 24699999864
No 167
>3cms_A Chymosin B; hydrolase, acid proteinase; 2.00A {Bos taurus} SCOP: b.50.1.2 PDB: 4cms_A 1czi_E* 1cms_A
Probab=90.06 E-value=1.4 Score=41.55 Aligned_cols=100 Identities=14% Similarity=0.276 Sum_probs=58.8
Q ss_pred eeeecCee------EEEEEcCCccccccCHHHHHHc----CCccccCCcceeEeecCcceeEEeEEEEEeEEEcCEEEe-
Q 016931 200 DMEVNGIP------LKAFVDSGAQSTIISKSCAERC----GLLRLLDDRYRGVAHGVGQSEILGRIHVAPIKIGNVFYP- 268 (380)
Q Consensus 200 ~v~Ing~~------v~alVDTGA~~siIs~~~a~rl----gL~~~~~~~~~~~~~gvg~~~~~g~i~~~~i~ig~~~~~- 268 (380)
.+.|+|+. ..++||||.+.+.++.+.++++ +........+. ..+... .......+.+++..+.
T Consensus 197 ~i~v~~~~~~~~~~~~aiiDSGTt~~~lP~~~~~~l~~~~~~~~~~~g~~~---~~C~~~---~~~P~i~f~f~g~~~~i 270 (323)
T 3cms_A 197 SVTISGVVVACEGGCQAILDTGTSKLVGPSSDILNIQQAIGATQNQYGEFD---IDCDNL---SYMPTVVFEINGKMYPL 270 (323)
T ss_dssp EEEETTEEEESTTCEEEEECTTCCSEEECHHHHHHHHHHHTCEEETTTEEE---ECTTCT---TTSCCEEEEETTEEEEE
T ss_pred eEEECCEEeecCCCcEEEEecCCccEeCCHHHHHHHHHHhCCeecCCCcEE---EECCCC---ccCceEEEEECCEEEEE
Confidence 35677765 4799999999999998887764 22110000000 000000 0112234555554443
Q ss_pred ------------EEEEEecC-CCCceeeeHHHHhhcCeEEEcCCCEEEEc
Q 016931 269 ------------CSFVVLDS-PNMEFLFGLDMLRKHQCIIDLKENVLRVG 305 (380)
Q Consensus 269 ------------~~~~Vl~~-~~~d~iLG~D~L~~~~~~ID~~~~~l~i~ 305 (380)
|-+.+... .....|||-.||+.+-.+.|+.+++|-|.
T Consensus 271 ~~~~y~~~~~~~C~~~i~~~~~~~~~iLG~~fl~~~y~vfD~~~~~igfA 320 (323)
T 3cms_A 271 TPSAYTSQDQGFCTSGFQSENHSQKWILGDVFIREYYSVFDRANNLVGLA 320 (323)
T ss_dssp CHHHHEEEETTEEEESEEEC---CCEEECHHHHTTEEEEEETTTTEEEEE
T ss_pred CHHHhccCCCCEEEEEEEeCCCCCcEEECHHHhhceEEEEECCCCEEEEE
Confidence 32223332 23468999999999999999999999885
No 168
>1lya_B Cathepsin D; lysosomal aspartic protease; HET: NAG BMA MAN; 2.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 1lyb_B* 1lyw_B*
Probab=89.74 E-value=1.8 Score=38.83 Aligned_cols=99 Identities=16% Similarity=0.225 Sum_probs=57.1
Q ss_pred eeecCee------EEEEEcCCccccccCHHHHHHc----CCccccCCcceeEeecCcceeEEeEEEEEeEEEcCEEEe--
Q 016931 201 MEVNGIP------LKAFVDSGAQSTIISKSCAERC----GLLRLLDDRYRGVAHGVGQSEILGRIHVAPIKIGNVFYP-- 268 (380)
Q Consensus 201 v~Ing~~------v~alVDTGA~~siIs~~~a~rl----gL~~~~~~~~~~~~~gvg~~~~~g~i~~~~i~ig~~~~~-- 268 (380)
+.|+|+. ..++||||.+.+.++.+.++++ +........+... +... .......+.+++..+.
T Consensus 108 i~v~~~~~~~~~~~~aiiDSGTt~~~lP~~~~~~l~~~~~~~~~~~g~~~~~---C~~~---~~~p~i~f~f~g~~~~l~ 181 (241)
T 1lya_B 108 VEVASGLTLCKEGCEAIVDTGTSLMVGPVDEVRELQKAIGAVPLIQGEYMIP---CEKV---STLPAITLKLGGKGYKLS 181 (241)
T ss_dssp EEETTSCEESTTCEEEEECTTCSSEEECHHHHHHHHHHHTCEEEETTEEEEE---GGGG---GGSCCEEEEETTEEEEEC
T ss_pred EEECCeeEeccCCCEEEEECCCccccCCHHHHHHHHHHhCCeeccCCcEEEE---CCCC---ccCCeEEEEECCEEEEEC
Confidence 4567654 5899999999999999888765 2211000000000 0000 0011223344443222
Q ss_pred ---------------EEEEEecC-----CCCceeeeHHHHhhcCeEEEcCCCEEEEc
Q 016931 269 ---------------CSFVVLDS-----PNMEFLFGLDMLRKHQCIIDLKENVLRVG 305 (380)
Q Consensus 269 ---------------~~~~Vl~~-----~~~d~iLG~D~L~~~~~~ID~~~~~l~i~ 305 (380)
|-+.+... .....|||-.||+.+-.+.|+.+++|-|.
T Consensus 182 ~~~y~~~~~~~~~~~C~~~~~~~~~~~~~~~~~ilG~~fl~~~y~vfD~~~~~igfA 238 (241)
T 1lya_B 182 PEDYTLKVSQAGKTLCLSGFMGMDIPPPSGPLWILGDVFIGRYYTVFDRDNNRVGFA 238 (241)
T ss_dssp TTTSEEEETTTTSSEEEESEEECCCCTTTCCCEEECHHHHTTEEEEEETTTTEEEEE
T ss_pred HHHhEEEccCCCCCeeEEEEEecccCCCCCCeEEechHHhcceEEEEECCCCEEEEE
Confidence 32222221 23468999999999999999999999885
No 169
>1ibq_A Aspergillopepsin; aspartic proteinase, hydrolase; HET: MAN; 2.14A {Aspergillus phoenicis} SCOP: b.50.1.2
Probab=89.73 E-value=0.87 Score=43.10 Aligned_cols=97 Identities=10% Similarity=0.019 Sum_probs=54.9
Q ss_pred eEEEEEcCCccccccCHHHHHHcCCccccCCcceeEeecCcceeEEeEEEEEeEEEcCEEEe-----------------E
Q 016931 207 PLKAFVDSGAQSTIISKSCAERCGLLRLLDDRYRGVAHGVGQSEILGRIHVAPIKIGNVFYP-----------------C 269 (380)
Q Consensus 207 ~v~alVDTGA~~siIs~~~a~rlgL~~~~~~~~~~~~~gvg~~~~~g~i~~~~i~ig~~~~~-----------------~ 269 (380)
...++||||.+.+.++.+.++++--.-. ...+. ...|.-...+........+.+|+..+. |
T Consensus 208 ~~~aiiDSGTt~~~lP~~~~~~i~~~i~-~a~~~-~~~g~~~~~C~~~~P~i~f~fgg~~~~i~~~~~~~~~~~~~~~~C 285 (325)
T 1ibq_A 208 GFSAIADTGTTLILLDDEIVSAYYEQVS-GAQES-YEAGGYVFSCSTDLPDFTVVIGDYKAVVPGKYINYAPVSTGSSTC 285 (325)
T ss_dssp CEEEEECTTCCSEEECHHHHHHHHTTST-TCBCC-SSSSSCEEETTCCCCCEEEEETTEEEEECHHHHEEEESSTTCSEE
T ss_pred CceEEEeCCCCcEeCCHHHHHHHHHhCC-CceEc-CcCCeEEEEcCCCCCcEEEEECCEEEEECHHHhcccccCCCCCeE
Confidence 4689999999999999999887622100 00000 000100001101122234445553332 2
Q ss_pred EEEEecC-CCCceeeeHHHHhhcCeEEEcCCCEEEEc
Q 016931 270 SFVVLDS-PNMEFLFGLDMLRKHQCIIDLKENVLRVG 305 (380)
Q Consensus 270 ~~~Vl~~-~~~d~iLG~D~L~~~~~~ID~~~~~l~i~ 305 (380)
-+.+... .....|||-.||+.+-.+.|+.+++|-|.
T Consensus 286 ~~~i~~~~~~~~~iLG~~fl~~~y~vfD~~~~~igfA 322 (325)
T 1ibq_A 286 YGGIQSNSGLGLSILGDVFLKSQYVVFNSEGPKLGFA 322 (325)
T ss_dssp EESEEECTTTCSEEECHHHHTTEEEEEETTTTEEEEE
T ss_pred EEEEEcCCCCCceEEChHHhcCEEEEEECCCCEEEee
Confidence 2212221 12357999999999999999999999885
No 170
>1izd_A Aspartic proteinase; sugar binding, acid protease, hydrolase; HET: MAN; 1.90A {Aspergillus oryzae} SCOP: b.50.1.2 PDB: 1ize_A*
Probab=89.60 E-value=0.74 Score=43.62 Aligned_cols=98 Identities=12% Similarity=0.056 Sum_probs=56.6
Q ss_pred eeEEEEEcCCccccccCHHHHHHcCCccccCCcceeEeecCcceeEEeEEEEEeEEEcCEEEeE---------------E
Q 016931 206 IPLKAFVDSGAQSTIISKSCAERCGLLRLLDDRYRGVAHGVGQSEILGRIHVAPIKIGNVFYPC---------------S 270 (380)
Q Consensus 206 ~~v~alVDTGA~~siIs~~~a~rlgL~~~~~~~~~~~~~gvg~~~~~g~i~~~~i~ig~~~~~~---------------~ 270 (380)
....++||||.+.+.++.+.++++--.- ....+. ...|.-...+........+.+|+..+.+ -
T Consensus 207 ~~~~aiiDSGTs~~~lp~~~~~~i~~~i-~ga~~~-~~~g~~~~~C~~~~P~i~f~fgg~~~~i~~~~~~~~~~~~~~C~ 284 (323)
T 1izd_A 207 DSITGIADTGTTLLLLDDSIVDAYYEQV-NGASYD-SSQGGYVFPSSASLPDFSVTIGDYTATVPGEYISFADVGNGQTF 284 (323)
T ss_dssp CCEEEEECTTCCSEEECHHHHHHHHTTS-TTCEEE-TTTTEEEEETTCCCCCEEEEETTEEEEECHHHHEEEECSTTEEE
T ss_pred CCceEEEeCCCcceeCCHHHHHHHHHhC-CCcEEc-CcCCEEEEECCCCCceEEEEECCEEEecCHHHeEEecCCCCeEE
Confidence 4568999999999999999988762210 000000 0001000011111223345556544332 2
Q ss_pred EEEecC-CCCceeeeHHHHhhcCeEEEcCCCEEEEc
Q 016931 271 FVVLDS-PNMEFLFGLDMLRKHQCIIDLKENVLRVG 305 (380)
Q Consensus 271 ~~Vl~~-~~~d~iLG~D~L~~~~~~ID~~~~~l~i~ 305 (380)
+.+... .....|||-.||+.+-.+.|+.+++|-|.
T Consensus 285 ~~i~~~~~~~~~IlG~~fl~~~y~vfD~~~~riGfA 320 (323)
T 1izd_A 285 GGIQSNSGIGFSIFGDVFLKSQYVVFDASGPRLGFA 320 (323)
T ss_dssp ESEEECTTTSSEEECHHHHTTEEEEEETTTTEEEEE
T ss_pred EEEEcCCCCCcEEEChHHhcCEEEEEECCCCEEEEe
Confidence 212222 13458999999999999999999999885
No 171
>2apr_A Rhizopuspepsin; hydrolase (aspartic proteinase); 1.80A {Rhizopus microsporus var} SCOP: b.50.1.2 PDB: 3apr_E* 4apr_E* 5apr_E* 6apr_E* 1uh9_A 1uh8_A 1uh7_A
Probab=89.18 E-value=0.88 Score=43.09 Aligned_cols=91 Identities=19% Similarity=0.364 Sum_probs=56.5
Q ss_pred ceeEEeeeec--CeeEEEEEcCCccccccC-HHHHHHc-CCccccCCc----ce------eEeecCcceeEEeEEEEEeE
Q 016931 195 VMLYVDMEVN--GIPLKAFVDSGAQSTIIS-KSCAERC-GLLRLLDDR----YR------GVAHGVGQSEILGRIHVAPI 260 (380)
Q Consensus 195 ~~lyv~v~In--g~~v~alVDTGA~~siIs-~~~a~rl-gL~~~~~~~----~~------~~~~gvg~~~~~g~i~~~~i 260 (380)
...|+++.|+ +++++++||||++.+.+. ..|. .| .-....+.. +. .+..|-|. ...|.+....|
T Consensus 15 ~~Y~~~i~iGTP~q~~~v~~DTGSs~lWv~~~~c~-~c~~~~~~y~~~~SsT~~~~~~~~~i~Yg~Gs-~~~G~~~~D~v 92 (325)
T 2apr_A 15 IEYYGQVTIGTPGKKFNLDFDTGSSDLWIASTLCT-NCGSGQTKYDPNQSSTYQADGRTWSISYGDGS-SASGILAKDNV 92 (325)
T ss_dssp TEEEEEEEETTTTEEEEEEEETTCCCCEEEBTTCS-SCCTTSCCBCGGGCTTCEEEEEEEEEECTTSC-EEEEEEEEEEE
T ss_pred CEEEEEEEECCCCeEEEEEEcCCCCCEEEccCCCc-hHhcCCCCCCcccCCCeeeCCCEEEEEECCCC-CEEEEEEEEEE
Confidence 4578999998 999999999999999874 3442 23 111112211 11 12233232 46788888899
Q ss_pred EEcCEEEe-EEEEEec-------CCCCceeeeHHH
Q 016931 261 KIGNVFYP-CSFVVLD-------SPNMEFLFGLDM 287 (380)
Q Consensus 261 ~ig~~~~~-~~~~Vl~-------~~~~d~iLG~D~ 287 (380)
.+|+..++ ..|.+.. ....|+||||-+
T Consensus 93 ~~g~~~v~~~~fg~~~~~~~~f~~~~~~GilGLg~ 127 (325)
T 2apr_A 93 NLGGLLIKGQTIELAKREAASFASGPNDGLLGLGF 127 (325)
T ss_dssp EETTEEEEEEEEEEEEEECHHHHTSSCSEEEECSC
T ss_pred EECCEEECcEEEEEEeccCcccccCCCceEEEeCC
Confidence 99986554 3444433 123899999854
No 172
>1lya_A Cathepsin D; lysosomal aspartic protease; HET: NAG BMA MAN; 2.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 1lyb_A* 1lyw_A*
Probab=89.16 E-value=0.83 Score=35.70 Aligned_cols=32 Identities=16% Similarity=0.348 Sum_probs=26.2
Q ss_pred ceeEEeeeec--CeeEEEEEcCCcccccc-CHHHH
Q 016931 195 VMLYVDMEVN--GIPLKAFVDSGAQSTII-SKSCA 226 (380)
Q Consensus 195 ~~lyv~v~In--g~~v~alVDTGA~~siI-s~~~a 226 (380)
...|+++.|. .+++.++||||++..-+ +..|.
T Consensus 13 ~~Y~~~i~iGTP~Q~~~v~~DTGSs~lWv~~~~C~ 47 (97)
T 1lya_A 13 AQYYGEIGIGTPPQCFTVVFDTGSSNLWVPSIHCK 47 (97)
T ss_dssp TEEEEEEEETTTTEEEEEEEETTCCCEEEEBTTCC
T ss_pred CeEEEEEEECCCCeEEEEEEeCCCCceEEeEcCcc
Confidence 4678999998 89999999999999876 44443
No 173
>2apr_A Rhizopuspepsin; hydrolase (aspartic proteinase); 1.80A {Rhizopus microsporus var} SCOP: b.50.1.2 PDB: 3apr_E* 4apr_E* 5apr_E* 6apr_E* 1uh9_A 1uh8_A 1uh7_A
Probab=88.98 E-value=0.7 Score=43.78 Aligned_cols=93 Identities=12% Similarity=0.137 Sum_probs=53.3
Q ss_pred eEEEEEcCCccccccCHH----HHHHcCCccccCCcceeEeecCcceeEEeEEEEEeEEEcCEEE--------------e
Q 016931 207 PLKAFVDSGAQSTIISKS----CAERCGLLRLLDDRYRGVAHGVGQSEILGRIHVAPIKIGNVFY--------------P 268 (380)
Q Consensus 207 ~v~alVDTGA~~siIs~~----~a~rlgL~~~~~~~~~~~~~gvg~~~~~g~i~~~~i~ig~~~~--------------~ 268 (380)
...++||||.+.+.++.+ +++.+.-.......+.. .+.. .......+.+++..+ .
T Consensus 212 ~~~~iiDSGTs~~~lP~~~~~~~~~~~~~~~~~~g~~~~---~C~~----~~~p~i~f~f~g~~~~ip~~~~~~~~~~~~ 284 (325)
T 2apr_A 212 SFDGILDTGTTLLILPNNIAASVARAYGASDNGDGTYTI---SCDT----SAFKPLVFSINGASFQVSPDSLVFEEFQGQ 284 (325)
T ss_dssp CEEEEECTTCSSEEEEHHHHHHHHHHHTCEECSSSCEEE---CSCG----GGCCCEEEEETTEEEEECGGGGEEEEETTE
T ss_pred CceEEEecCCccEECCHHHHHHHHHHHhcccCCCCeEEE---ECCC----CCCCcEEEEECCEEEEECHHHEEEcCCCCe
Confidence 468999999999999999 66666431100000000 0000 001112333333211 1
Q ss_pred EEEEEecCCCCceeeeHHHHhhcCeEEEcCCCEEEEcC
Q 016931 269 CSFVVLDSPNMEFLFGLDMLRKHQCIIDLKENVLRVGG 306 (380)
Q Consensus 269 ~~~~Vl~~~~~d~iLG~D~L~~~~~~ID~~~~~l~i~~ 306 (380)
|-+.+........|||-.||+.+-.+.|+.+++|-|..
T Consensus 285 C~~~i~~~~~~~~iLG~~fl~~~y~vfD~~~~~igfA~ 322 (325)
T 2apr_A 285 CIAGFGYGNWGFAIIGDTFLKNNYVVFNQGVPEVQIAP 322 (325)
T ss_dssp EEESEEEESSSSEEECHHHHTTEEEEEETTTTEEEEEE
T ss_pred EEEEEEcCCCCCEEECHHHhcceEEEEECCCCEEEEEe
Confidence 32222222234589999999999999999999998864
No 174
>1am5_A Pepsin, acid proteinase; aspartyl protease, hydrolase; 2.16A {Gadus morhua} SCOP: b.50.1.2
Probab=88.98 E-value=0.63 Score=43.96 Aligned_cols=91 Identities=16% Similarity=0.326 Sum_probs=56.3
Q ss_pred ceeEEeeeec--CeeEEEEEcCCccccccC-HHHH-HHcCCccccCC----cce------eEeecCcceeEEeEEEEEeE
Q 016931 195 VMLYVDMEVN--GIPLKAFVDSGAQSTIIS-KSCA-ERCGLLRLLDD----RYR------GVAHGVGQSEILGRIHVAPI 260 (380)
Q Consensus 195 ~~lyv~v~In--g~~v~alVDTGA~~siIs-~~~a-~rlgL~~~~~~----~~~------~~~~gvg~~~~~g~i~~~~i 260 (380)
...|+++.|. ++++++++|||++.+.+. ..|. ..|......+. .+. .+..|-|. ..|.+....|
T Consensus 12 ~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~Gs--~~G~~~~D~v 89 (324)
T 1am5_A 12 TEYYGVISIGTPPESFKVIFDTGSSNLWVSSSHCSAQACSNHNKFKPRQSSTYVETGKTVDLTYGTGG--MRGILGQDTV 89 (324)
T ss_dssp TEEEEEEEETTTTEEEEEEEETTCCCEEECBTTCCSHHHHTSCCBCGGGCTTCEEEEEEEEEECSSCE--EEEEEEEEEE
T ss_pred CEEEEEEEECCCCeEEEEEEeCCCcceEEecCCCCcccccCCCcCCCccCCCeEeCCcEEEEEECCCC--eEEEEEECce
Confidence 3568899997 689999999999998874 3332 12322111211 111 13344443 4788888899
Q ss_pred EEcCEEEe-EEEEEecC--------CCCceeeeHHH
Q 016931 261 KIGNVFYP-CSFVVLDS--------PNMEFLFGLDM 287 (380)
Q Consensus 261 ~ig~~~~~-~~~~Vl~~--------~~~d~iLG~D~ 287 (380)
.+|+..++ ..|.+... ...|+||||-+
T Consensus 90 ~~g~~~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~ 125 (324)
T 1am5_A 90 SVGGGSDPNQELGESQTEPGPFQAAAPFDGILGLAY 125 (324)
T ss_dssp ESSSSCEEEEEEEEEEECCSTTTTTCSSSEEEECSC
T ss_pred eECCcEEcccEEEEEEecccccccCCCCceEEecCC
Confidence 99984433 44544431 35799999864
No 175
>1am5_A Pepsin, acid proteinase; aspartyl protease, hydrolase; 2.16A {Gadus morhua} SCOP: b.50.1.2
Probab=88.86 E-value=0.58 Score=44.23 Aligned_cols=98 Identities=21% Similarity=0.253 Sum_probs=59.1
Q ss_pred eeecCee-----EEEEEcCCccccccCHHHHHHc----CCccccCCcceeEeecCcceeEEeEEEEEeEEEcCEEEe---
Q 016931 201 MEVNGIP-----LKAFVDSGAQSTIISKSCAERC----GLLRLLDDRYRGVAHGVGQSEILGRIHVAPIKIGNVFYP--- 268 (380)
Q Consensus 201 v~Ing~~-----v~alVDTGA~~siIs~~~a~rl----gL~~~~~~~~~~~~~gvg~~~~~g~i~~~~i~ig~~~~~--- 268 (380)
+.|+|+. ..++||||.+.+.++.+.++.+ +.. .....+. ..+... .......+.+++..+.
T Consensus 197 i~v~~~~~~~~~~~aiiDSGTt~~~lp~~~~~~l~~~~~~~-~~~g~~~---~~C~~~---~~~P~i~f~f~g~~~~i~~ 269 (324)
T 1am5_A 197 ITVNGQTAACEGCQAIVDTGTSKIVAPVSALANIMKDIGAS-ENQGEMM---GNCASV---QSLPDITFTINGVKQPLPP 269 (324)
T ss_dssp EEETTEECCCCCEEEEECTTCSSEEECTTTHHHHHHHHTCE-ECCCCEE---CCTTSS---SSSCCEEEEETTEEEEECH
T ss_pred EEECCceeeccCceEEEecCCccEECCHHHHHHHHHHhCCc-ccCCcEE---EeCCCc---ccCCcEEEEECCEEEEECH
Confidence 4577765 5799999999999998877654 221 0000000 000000 0112234555654443
Q ss_pred ----------EEEEEecC-----CCCceeeeHHHHhhcCeEEEcCCCEEEEc
Q 016931 269 ----------CSFVVLDS-----PNMEFLFGLDMLRKHQCIIDLKENVLRVG 305 (380)
Q Consensus 269 ----------~~~~Vl~~-----~~~d~iLG~D~L~~~~~~ID~~~~~l~i~ 305 (380)
|-+.+... .....|||-.||+.+-.+.|+.+++|-|.
T Consensus 270 ~~y~~~~~~~C~~~~~~~~~~~~~~~~~ilG~~fl~~~y~vfD~~~~~igfa 321 (324)
T 1am5_A 270 SAYIEGDQAFCTSGLGSSGVPSNTSELWIFGDVFLRNYYTIYDRTNNKVGFA 321 (324)
T ss_dssp HHHEEESSSCEEECEEECCSCCSSSCEEEECHHHHHHEEEEEETTTTEEEEE
T ss_pred HHhcccCCCeEEEEEEECccCCCCCCcEEEChHHhccEEEEEECCCCEEEEE
Confidence 33233322 23468999999999999999999999885
No 176
>2qzx_A Candidapepsin-5; aspartic proteinase, aspartyl protease, CL PAIR of basic residues, glycoprotein, protease, secreted; HET: STA; 2.50A {Candida albicans}
Probab=88.76 E-value=1.8 Score=41.04 Aligned_cols=92 Identities=21% Similarity=0.316 Sum_probs=57.9
Q ss_pred ceeEEeeeec--CeeEEEEEcCCccccccCHH---HH--------HHcCCccccCC----cce------eEeecCcceeE
Q 016931 195 VMLYVDMEVN--GIPLKAFVDSGAQSTIISKS---CA--------ERCGLLRLLDD----RYR------GVAHGVGQSEI 251 (380)
Q Consensus 195 ~~lyv~v~In--g~~v~alVDTGA~~siIs~~---~a--------~rlgL~~~~~~----~~~------~~~~gvg~~~~ 251 (380)
...|+++.|. +++++++||||++.+.+... |. ..|.-....+. .+. .+..|-| ...
T Consensus 12 ~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~~~C~~~~~~~~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~G-s~~ 90 (342)
T 2qzx_A 12 ITYTADITVGSDNQKLNVIVDTGSSDLWIPDSNVICIPKWRGDKGDFCKSAGSYSPASSRTSQNLNTRFDIKYGDG-SYA 90 (342)
T ss_dssp SCEEEEEEETTTTEEEEEEEETTCCCEEEEEEEEEECCCSSSCCTTGGGTTCCBCGGGCTTCEEEEEEEEEECTTS-CEE
T ss_pred eEEEEEEEECCCCcEEEEEEeCCCCCeEEecCCCCccCccccCccccccCCCcCCcccCCCcccCCCcEEEEeCCC-CeE
Confidence 4578999998 89999999999999988533 42 12322111221 111 1223333 235
Q ss_pred EeEEEEEeEEEcCEEEe-EEEEEec-CCCCceeeeHHH
Q 016931 252 LGRIHVAPIKIGNVFYP-CSFVVLD-SPNMEFLFGLDM 287 (380)
Q Consensus 252 ~g~i~~~~i~ig~~~~~-~~~~Vl~-~~~~d~iLG~D~ 287 (380)
.|.+....|.+|+..++ ..|.+.. ....|+||||-+
T Consensus 91 ~G~~~~D~v~~g~~~v~~~~fg~~~~~~~~~GilGLg~ 128 (342)
T 2qzx_A 91 KGKLYKDTVGIGGVSVRDQLFANVWSTSARKGILGIGF 128 (342)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEEEECSSSCEEECSC
T ss_pred EEEEEEEEEEECCEEecceEEEEEEecCCCcCEEEEcc
Confidence 68888889999986544 4554444 246899999865
No 177
>4aa9_A Chymosin; hydrolase, aspartic peptidase, rennet; HET: NAG; 1.60A {Camelus dromedarius} PDB: 4aa8_A 1czi_E* 1cms_A 4cms_A 3cms_A
Probab=88.71 E-value=1.8 Score=40.55 Aligned_cols=99 Identities=16% Similarity=0.261 Sum_probs=58.5
Q ss_pred eeecCee------EEEEEcCCccccccCHHHHHHc----CCccccCCcceeEeecCcceeEEeEEEEEeEEEcCEEEe--
Q 016931 201 MEVNGIP------LKAFVDSGAQSTIISKSCAERC----GLLRLLDDRYRGVAHGVGQSEILGRIHVAPIKIGNVFYP-- 268 (380)
Q Consensus 201 v~Ing~~------v~alVDTGA~~siIs~~~a~rl----gL~~~~~~~~~~~~~gvg~~~~~g~i~~~~i~ig~~~~~-- 268 (380)
+.|+|+. ..++||||.+.+.++.+.++++ +........+ ...+... .......+.+++..+.
T Consensus 195 i~v~~~~~~~~~~~~~iiDsGtt~~~lP~~~~~~i~~~~~~~~~~~g~~---~~~C~~~---~~~p~i~f~f~g~~~~l~ 268 (320)
T 4aa9_A 195 VTINGVAVACVGGCQAILDTGTSVLFGPSSDILKIQMAIGATENRYGEF---DVNCGNL---RSMPTVVFEINGRDYPLS 268 (320)
T ss_dssp EEETTEEEESTTCEEEEECTTCSSEEEEHHHHHHHHHHTTCEECTTSCE---EECGGGG---GGCCCEEEEETTEEEEEC
T ss_pred EEECCEEeccCCCcEEEEECCCCcEECCHHHHHHHHHHhCCcccCCCcE---EEeCCCC---CcCceEEEEECCEEEEEC
Confidence 4567754 5799999999999998887765 2211000000 0000000 0112234555554433
Q ss_pred -----------EEEEEec-CCCCceeeeHHHHhhcCeEEEcCCCEEEEc
Q 016931 269 -----------CSFVVLD-SPNMEFLFGLDMLRKHQCIIDLKENVLRVG 305 (380)
Q Consensus 269 -----------~~~~Vl~-~~~~d~iLG~D~L~~~~~~ID~~~~~l~i~ 305 (380)
|-+.+.. ..+...|||..||+.+-.+.|+.++++-|.
T Consensus 269 ~~~y~~~~~~~C~~~i~~~~~~~~~ilG~~fl~~~y~vfD~~~~~igfA 317 (320)
T 4aa9_A 269 PSAYTSKDQGFCTSGFQGDNNSELWILGDVFIREYYSVFDRANNRVGLA 317 (320)
T ss_dssp HHHHEEEETTEEEESEEEETTCCCEEECHHHHTTEEEEEETTTTEEEEE
T ss_pred HHHhccCCCCeEEEEEEcCCCCCcEEEChHHhcceEEEEECCCCEEEEE
Confidence 2222222 223358999999999999999999999885
No 178
>1j71_A Candidapepsin, aspartic proteinase; candida tropicalis aspartic protease, SAPT1, hydrolase; 1.80A {Candida tropicalis} SCOP: b.50.1.2
Probab=88.57 E-value=0.6 Score=44.36 Aligned_cols=92 Identities=13% Similarity=0.201 Sum_probs=58.0
Q ss_pred ceeEEeeeec--CeeEEEEEcCCccccccCHH---HHH--------HcCCccccCC----cce------eEeecCcceeE
Q 016931 195 VMLYVDMEVN--GIPLKAFVDSGAQSTIISKS---CAE--------RCGLLRLLDD----RYR------GVAHGVGQSEI 251 (380)
Q Consensus 195 ~~lyv~v~In--g~~v~alVDTGA~~siIs~~---~a~--------rlgL~~~~~~----~~~------~~~~gvg~~~~ 251 (380)
...|+++.|. ++++++++|||++.+.+... |.. .|.-....+. .+. .+..|-|+ ..
T Consensus 12 ~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~~~C~~~~~~~~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~Gs-~~ 90 (334)
T 1j71_A 12 PSYAADIVVGSNQQKQTVVIDTGSSDLWVVDTDAECQVTYSGQTNNFCKQEGTFDPSSSSSAQNLNQDFSIEYGDLT-SS 90 (334)
T ss_dssp SSEEEEEEETTTTEEEEEEEETTCCCEEEEEEEEEECCCSTTCCTTGGGSSCCBCGGGCTTCEEEEEEEEEEBTTSC-EE
T ss_pred cEEEEEEEEcCCCcEEEEEEcCCCCCEEEecCCCCCcCcccccccccccCCCcCCcccCCCcccCCCceEEEECCCC-EE
Confidence 3578999998 89999999999999988532 431 2322111221 111 12233332 35
Q ss_pred EeEEEEEeEEEcCEEEe-EEEEEec-CCCCceeeeHHH
Q 016931 252 LGRIHVAPIKIGNVFYP-CSFVVLD-SPNMEFLFGLDM 287 (380)
Q Consensus 252 ~g~i~~~~i~ig~~~~~-~~~~Vl~-~~~~d~iLG~D~ 287 (380)
.|.+....|.+|+..++ ..|.+.. ....|+||||-+
T Consensus 91 ~G~~~~D~v~~g~~~~~~~~fg~~~~~~~~~GilGLg~ 128 (334)
T 1j71_A 91 QGSFYKDTVGFGGISIKNQQFADVTTTSVDQGIMGIGF 128 (334)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEEEESSSSCEEECSC
T ss_pred EEEEEEEEEEECCEEEccEEEEEEEecCCCccEEEEcC
Confidence 68888889999986544 4454444 246899999864
No 179
>1vjk_A Molybdopterin converting factor, subunit 1; structural genomics, PSI, protein structure INI southeast collaboratory for structural genomics; 1.51A {Pyrococcus furiosus} SCOP: d.15.3.1
Probab=88.48 E-value=2.7 Score=32.63 Aligned_cols=66 Identities=14% Similarity=0.165 Sum_probs=46.1
Q ss_pred CEEEEEeCC------C-CEEEEEeCCCCCHHHHHHHHHHHhC-C----------CCcCeEEecCCeecCCcccchhcCCC
Q 016931 1 MRITVMTAD------E-QIISLDVDPHETVENVKALLEVETQ-V----------PLQQQQLLYNGREMNNAEKLSALGVK 62 (380)
Q Consensus 1 M~ItVk~~~------g-~~~~i~V~~~~TV~~LK~~I~~~~g-i----------p~~~q~Li~~Gk~L~D~~tL~~~gI~ 62 (380)
|+|+|+.-. | ....+++....||.+|.+.+..+.. + ......+..||+.... +.-++
T Consensus 10 ~~v~V~~FA~lre~~g~~~~~~e~~~~~Tv~~Ll~~L~~~~p~l~~~l~~~~g~~~~~v~v~VNg~~v~~-----~~~L~ 84 (98)
T 1vjk_A 10 VKVKVKYFARFRQLAGVDEEEIELPEGARVRDLIEEIKKRHEKFKEEVFGEGYDEDADVNIAVNGRYVSW-----DEELK 84 (98)
T ss_dssp EEEEEEECTHHHHHHSSSEEEEEECTTCBHHHHHHHHHHHCGGGGGSCBCSSSCTTSSBEEEETTBCCCT-----TCBCC
T ss_pred EEEEEEEhHHHHHHhCCCeEEEECCCCCCHHHHHHHHHhHChhHHHHhhccccccCCcEEEEECCEECCC-----CCCCC
Confidence 677887531 3 4567888888999999999988752 1 1133445678877653 55689
Q ss_pred CCcEEEEee
Q 016931 63 DEDLVMMVS 71 (380)
Q Consensus 63 dg~~I~l~~ 71 (380)
+||.|.+..
T Consensus 85 dGDeV~i~p 93 (98)
T 1vjk_A 85 DGDVVGVFP 93 (98)
T ss_dssp TTCEEEEES
T ss_pred CCCEEEEEC
Confidence 999998874
No 180
>4e74_A Plexin-A4; RBD, structural genomics, structural genomics consor SGC, signaling protein; 1.58A {Homo sapiens} PDB: 3q3j_A*
Probab=88.39 E-value=1.5 Score=35.67 Aligned_cols=63 Identities=22% Similarity=0.348 Sum_probs=45.3
Q ss_pred CEEEEEeCCCCCHHHHHHHHHHHh--CCCC------cCeEEec-CC---e-ecCC---------c----ccchhcCCCCC
Q 016931 11 QIISLDVDPHETVENVKALLEVET--QVPL------QQQQLLY-NG---R-EMNN---------A----EKLSALGVKDE 64 (380)
Q Consensus 11 ~~~~i~V~~~~TV~~LK~~I~~~~--gip~------~~q~Li~-~G---k-~L~D---------~----~tL~~~gI~dg 64 (380)
..+.+.|-..+||.++|++|-... |+|. ++..|-| .| + +|.| . .||+.|+|.||
T Consensus 27 ~~i~VkVLdCDTItQvKeKiLd~vyk~~p~S~rP~~~~~dLEwr~g~~~~~iL~D~D~ts~~~~~wkrLNTL~HY~V~dg 106 (117)
T 4e74_A 27 PEVPVKILNCDTITQVKEKILDAIFKNVPCSHRPKAADMDLEWRQGSGARMILQDEDITTKIENDWKRLNTLAHYQVPDG 106 (117)
T ss_dssp CCEEEEEETTSBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEECTTSCEEEECSSSTTCCC---CCCCCBHHHHTCCTT
T ss_pred CceEeeeecCCchHHHHHHHHHHHhcCCCcccCCCCCceeEEEecCCCCceEeecCCCccEecCcceEeccccccCCCCC
Confidence 347788888999999999988764 4443 4555654 33 3 3544 1 37999999999
Q ss_pred cEEEEeecC
Q 016931 65 DLVMMVSNA 73 (380)
Q Consensus 65 ~~I~l~~~~ 73 (380)
.+|-++.+.
T Consensus 107 atl~l~~~~ 115 (117)
T 4e74_A 107 SVVALVSKQ 115 (117)
T ss_dssp CEEEEEECC
T ss_pred CEEEEEeCC
Confidence 999998763
No 181
>1dpj_A Proteinase A; proteinase A, hydrolase-hydrolase inhibitor COM; HET: BMA MAN NAG; 1.80A {Saccharomyces cerevisiae} SCOP: b.50.1.2 PDB: 1dp5_A* 1fmu_A* 1fmx_A* 1fq5_A* 1fq4_A* 1fq6_A* 1fq7_A* 1fq8_A* 2jxr_A* 1g0v_A*
Probab=88.01 E-value=3.1 Score=39.16 Aligned_cols=99 Identities=16% Similarity=0.182 Sum_probs=57.3
Q ss_pred eeecCee-----EEEEEcCCccccccCHHHHHHc----CCccccCCcceeEeecCcceeEEeEEEEEeEEEcCEEEe---
Q 016931 201 MEVNGIP-----LKAFVDSGAQSTIISKSCAERC----GLLRLLDDRYRGVAHGVGQSEILGRIHVAPIKIGNVFYP--- 268 (380)
Q Consensus 201 v~Ing~~-----v~alVDTGA~~siIs~~~a~rl----gL~~~~~~~~~~~~~gvg~~~~~g~i~~~~i~ig~~~~~--- 268 (380)
+.|+|.. ..++||||.+.+.++.+.++++ +.....+..+.. .+... .......+.+++..+.
T Consensus 201 i~v~~~~~~~~~~~aiiDSGTt~~~lP~~~~~~l~~~~~~~~~~~g~~~~---~C~~~---~~~P~i~f~f~g~~~~i~~ 274 (329)
T 1dpj_A 201 IGLGDEYAELESHGAAIDTGTSLITLPSGLAEMINAEIGAKKGWTGQYTL---DCNTR---DNLPDLIFNFNGYNFTIGP 274 (329)
T ss_dssp EEETTEEEECSSCEEEECTTCSCEEECHHHHHHHHHHHTCEECTTSSEEE---CGGGG---GGCCCEEEEETTEEEEECT
T ss_pred EEECCeEecCCCccEEeeCCCCcEECCHHHHHHHHHHhCCccCCCCeEEE---ECCCC---CcCCcEEEEECCEEEEECH
Confidence 4567654 4699999999999999888765 221100001100 00000 0111223344442222
Q ss_pred ----------EEEEEec-----CCCCceeeeHHHHhhcCeEEEcCCCEEEEc
Q 016931 269 ----------CSFVVLD-----SPNMEFLFGLDMLRKHQCIIDLKENVLRVG 305 (380)
Q Consensus 269 ----------~~~~Vl~-----~~~~d~iLG~D~L~~~~~~ID~~~~~l~i~ 305 (380)
|-+.+.. ......|||-.||+.+-.+.|+.+++|-|.
T Consensus 275 ~~y~~~~~~~C~~~~~~~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~~igfA 326 (329)
T 1dpj_A 275 YDYTLEVSGSCISAITPMDFPEPVGPLAIVGDAFLRKYYSIYDLGNNAVGLA 326 (329)
T ss_dssp TTSEEEETTEEEECEEECCCCTTTCSEEEECHHHHTTEEEEEETTTTEEEEE
T ss_pred HHhEecCCCEEEEEEEecccCCCCCCcEEEChHHhcceEEEEECCCCEEEEE
Confidence 3222222 123468999999999999999999999885
No 182
>1yg9_A Aspartic protease BLA G 2; allegren, hydrolase, allergen; HET: NAG; 1.30A {Blattella germanica} PDB: 2nr6_A* 3liz_A*
Probab=87.98 E-value=0.59 Score=44.46 Aligned_cols=101 Identities=10% Similarity=0.118 Sum_probs=60.2
Q ss_pred eeecCee-----EEEEEcCCccccccCHHHHHHc----CCccccCC--cceeEeecCcceeEEeEEEEEeEEEcCEEEe-
Q 016931 201 MEVNGIP-----LKAFVDSGAQSTIISKSCAERC----GLLRLLDD--RYRGVAHGVGQSEILGRIHVAPIKIGNVFYP- 268 (380)
Q Consensus 201 v~Ing~~-----v~alVDTGA~~siIs~~~a~rl----gL~~~~~~--~~~~~~~gvg~~~~~g~i~~~~i~ig~~~~~- 268 (380)
+.|+|.. ..++||||.+.+.++.+.++++ +....... .+. ...+... .......+.+|+..+.
T Consensus 202 i~v~~~~~~~~~~~aiiDSGTs~~~lP~~~~~~l~~~~~~~~~~~g~~~~~--~~~C~~~---~~~p~i~f~fgg~~~~l 276 (330)
T 1yg9_A 202 VKIGDTTVAPAGTQAIIDTSKAIIVGPKAYVNPINEAIGCVVEKTTTRRIC--KLDCSKI---PSLPDVTFVINGRNFNI 276 (330)
T ss_dssp EEETTEEEECTTCEEEECTTCSSEEEEHHHHHHHHHHHTCEEEECSSCEEE--EECGGGG---GGSCCEEEEETTEEEEE
T ss_pred EEECCEEEcCCCcEEEEecCCccccCCHHHHHHHHHHhCCcccCCCceEEE--EEECCCc---cccCcEEEEECCEEEEE
Confidence 4567764 5799999999999998888765 22110000 000 0001100 0122334566664443
Q ss_pred ------------EEEEEec-CCCCceeeeHHHHhhcCeEEEcCCCEEEEcC
Q 016931 269 ------------CSFVVLD-SPNMEFLFGLDMLRKHQCIIDLKENVLRVGG 306 (380)
Q Consensus 269 ------------~~~~Vl~-~~~~d~iLG~D~L~~~~~~ID~~~~~l~i~~ 306 (380)
|-+.+.. ......|||-.||+.+-.+.|+.+++|-|..
T Consensus 277 ~~~~y~~~~~~~C~~~i~~~~~~~~~ilG~~fl~~~y~vfD~~~~riGfA~ 327 (330)
T 1yg9_A 277 SSQYYIQQNGNLCYSGFQPCGHSDHFFIGDFFVDHYYSEFNWENKTMGFGR 327 (330)
T ss_dssp CHHHHEEEETTEEEESEEEETTCSSEEECHHHHTTEEEEEETTTTEEEEEE
T ss_pred CHHHhcccCCCcEEEEEEeCCCCCeEEecHHHhhheEEEEECCCCEEEEEE
Confidence 3222322 1234589999999999999999999998863
No 183
>1bxo_A Protein (penicillopepsin); hydrolase, phosphonate inhibitors, macrocycle; HET: MAN PP7; 0.95A {Penicillium janthinellum} SCOP: b.50.1.2 PDB: 1apu_E* 1apv_E* 1apw_E* 1apt_E* 1bxq_A* 1ppk_E* 1ppl_E* 1ppm_E* 2wea_A* 2web_A* 2wec_A* 2wed_A* 3app_A
Probab=87.90 E-value=0.98 Score=42.71 Aligned_cols=102 Identities=10% Similarity=0.001 Sum_probs=58.0
Q ss_pred eecC---eeEEEEEcCCccccccCHHHHHHcCCccccCCcceeEeecCcceeEEeEEEEEeEEEcCEEEeE---------
Q 016931 202 EVNG---IPLKAFVDSGAQSTIISKSCAERCGLLRLLDDRYRGVAHGVGQSEILGRIHVAPIKIGNVFYPC--------- 269 (380)
Q Consensus 202 ~Ing---~~v~alVDTGA~~siIs~~~a~rlgL~~~~~~~~~~~~~gvg~~~~~g~i~~~~i~ig~~~~~~--------- 269 (380)
.|+| ....++||||.+.+.++.+.++++--.- ....+. ...|.-...+........+.+|+..+.+
T Consensus 199 ~v~~~~~~~~~aiiDSGTs~~~lP~~~~~~l~~~i-~~a~~~-~~~g~~~~~C~~~~P~i~f~fgg~~~~l~~~~~~~~~ 276 (323)
T 1bxo_A 199 TAGSQSGDGFSGIADTGTTLLLLDDSVVSQYYSQV-SGAQQD-SNAGGYVFDCSTNLPDFSVSISGYTATVPGSLINYGP 276 (323)
T ss_dssp EETTEEEEEEEEEECTTCSSEEECHHHHHHHHTTS-TTCEEE-TTTTEEEECTTCCCCCEEEEETTEEEEECHHHHEEEE
T ss_pred EECCccCCCceEEEeCCCCceeCCHHHHHHHHHhC-CCceEc-CcCCEEEEECCCCCceEEEEECCEEEEECHHHeEEec
Confidence 4555 3478999999999999999988762210 000000 0000000001011223345555544332
Q ss_pred -------EEEEecC-CCCceeeeHHHHhhcCeEEEcCCCEEEEc
Q 016931 270 -------SFVVLDS-PNMEFLFGLDMLRKHQCIIDLKENVLRVG 305 (380)
Q Consensus 270 -------~~~Vl~~-~~~d~iLG~D~L~~~~~~ID~~~~~l~i~ 305 (380)
-+.+... .....|||-.||+.+-.+.|+.+++|-|.
T Consensus 277 ~~~~~~C~~~i~~~~~~~~~ILG~~fl~~~y~vfD~~~~riGfA 320 (323)
T 1bxo_A 277 SGDGSTCLGGIQSNSGIGFSIFGDIFLKSQYVVFDSDGPQLGFA 320 (323)
T ss_dssp CSSSSCEEESEEECTTCSSEEECHHHHTTEEEEEETTTTEEEEE
T ss_pred cCCCCeEEEEEECCCCCCcEEEChHHHcCEEEEEECCCCEEEEe
Confidence 2212221 12358999999999999999999999885
No 184
>1miq_A Plasmepsin; aspartic proteinase zymogen, domain opening, hydrolase; 2.50A {Plasmodium vivax} SCOP: b.50.1.2 PDB: 1ls5_A*
Probab=87.84 E-value=1.3 Score=42.87 Aligned_cols=99 Identities=15% Similarity=0.242 Sum_probs=58.0
Q ss_pred eeecCe---eEEEEEcCCccccccCHHHHHHc----CCcc-ccCCcceeEeecCcceeEEeEEEEEeEEEcCEEE-----
Q 016931 201 MEVNGI---PLKAFVDSGAQSTIISKSCAERC----GLLR-LLDDRYRGVAHGVGQSEILGRIHVAPIKIGNVFY----- 267 (380)
Q Consensus 201 v~Ing~---~v~alVDTGA~~siIs~~~a~rl----gL~~-~~~~~~~~~~~gvg~~~~~g~i~~~~i~ig~~~~----- 267 (380)
+.|+|+ ...++||||.+.+.++.+.++.+ +... .....+...+.. .......+.+||..+
T Consensus 247 i~v~g~~~~~~~aiiDSGTs~~~lP~~~~~~l~~~~~~~~~~~~g~~~~~C~~-------~~~P~i~f~f~g~~~~l~~~ 319 (375)
T 1miq_A 247 VHFGKQTMEKANVIVDSGTTTITAPSEFLNKFFANLNVIKVPFLPFYVTTCDN-------KEMPTLEFKSANNTYTLEPE 319 (375)
T ss_dssp EEETTEEEEEEEEEECTTBSSEEECHHHHHHHHHHHTCEECTTSSCEEEETTC-------TTCCCEEEECSSCEEEECGG
T ss_pred EEECCEEcccceEEecCCCccEEcCHHHHHHHHHHhCCcccCCCCeEEEECCC-------CCCCcEEEEECCEEEEECHH
Confidence 677885 56899999999999999888765 2210 000000000000 001112233333222
Q ss_pred ------------eEEEEEecCC--CCceeeeHHHHhhcCeEEEcCCCEEEEcC
Q 016931 268 ------------PCSFVVLDSP--NMEFLFGLDMLRKHQCIIDLKENVLRVGG 306 (380)
Q Consensus 268 ------------~~~~~Vl~~~--~~d~iLG~D~L~~~~~~ID~~~~~l~i~~ 306 (380)
.|-+.+.... ....|||-.||+.+-.+.|+.+++|-|..
T Consensus 320 ~yi~~~~~~g~~~C~~~~~~~~~~~~~~ILG~~fl~~~yvvfD~~~~riGfA~ 372 (375)
T 1miq_A 320 YYMNPILEVDDTLCMITMLPVDIDSNTFILGDPFMRKYFTVFDYDKESVGFAI 372 (375)
T ss_dssp GSEEESSSSSCSEEEESEEECCSSSSEEEECHHHHHHEEEEEETTTTEEEEEE
T ss_pred HhEeeccCCCCCeEEEEEEECCCCCCcEEECHHHhccEEEEEECCCCEEEEEE
Confidence 1332333322 24689999999999999999999998853
No 185
>3h6n_A Plexin-D1; structural genomics consortium, SGC, membrane, transmembrane, receptor, alternative splicing, cell membrane, glycoprotein, polymorphism; 2.00A {Homo sapiens}
Probab=87.84 E-value=2.5 Score=34.91 Aligned_cols=63 Identities=14% Similarity=0.183 Sum_probs=46.5
Q ss_pred CCEEEEEeCCCCCHHHHHHHHHHHh--CCC------CcCeEEec-CC---e-ecCC---------c----ccchhcCCCC
Q 016931 10 EQIISLDVDPHETVENVKALLEVET--QVP------LQQQQLLY-NG---R-EMNN---------A----EKLSALGVKD 63 (380)
Q Consensus 10 g~~~~i~V~~~~TV~~LK~~I~~~~--gip------~~~q~Li~-~G---k-~L~D---------~----~tL~~~gI~d 63 (380)
+..+.+.|-..+||.++|++|-... ++| +++..|-| .| + +|.| . .||..|+|.|
T Consensus 16 ~~~i~VkVLdCDTItQvKeKiLd~vyk~~p~S~rP~~~~~dLEwr~g~~~~~iL~D~D~ts~~~~~~krLNTL~HY~V~d 95 (127)
T 3h6n_A 16 MDSLSVRAMDTDTLTQVKEKILEAFCKNVPYSQWPRAEDVDLEWFASSTQSYILRDLDDTSVVEDGRKKLNTLAHYKIPE 95 (127)
T ss_dssp CCCEEEEEETTSBHHHHHHHHHHHHSTTSCGGGSCCGGGEEEEEECSSSCEEECCSSSTTSCEETTEECCCBTTTTTCCT
T ss_pred CCceeeeeeccCchhhhhHHHHHHHhccCCcccCCCCcccceEEecCCCCceEeecCCCcceecCceeEeccccccCCCC
Confidence 4557888888999999999998764 344 35666765 23 3 3554 1 3799999999
Q ss_pred CcEEEEeec
Q 016931 64 EDLVMMVSN 72 (380)
Q Consensus 64 g~~I~l~~~ 72 (380)
|.+|-++..
T Consensus 96 gatv~l~~~ 104 (127)
T 3h6n_A 96 GASLAMSLI 104 (127)
T ss_dssp TCEEEEEEC
T ss_pred CCEEEEEEc
Confidence 999999854
No 186
>2juo_A GA-binding protein alpha chain; OST, ubiquitin, transcription factor, ensemble, DNA-binding, nucleus, transcription regulation; NMR {Mus musculus}
Probab=87.79 E-value=0.94 Score=34.64 Aligned_cols=58 Identities=26% Similarity=0.390 Sum_probs=50.0
Q ss_pred EEEEeCCCCCHHHHHHHHHHHhCCCCcCeEEecCCeecCCcccchhcCCCCCcEEEEe
Q 016931 13 ISLDVDPHETVENVKALLEVETQVPLQQQQLLYNGREMNNAEKLSALGVKDEDLVMMV 70 (380)
Q Consensus 13 ~~i~V~~~~TV~~LK~~I~~~~gip~~~q~Li~~Gk~L~D~~tL~~~gI~dg~~I~l~ 70 (380)
+.-..+-..++..||.+++.+.|++.+...++.-+..|.++++|-+.+|+-...|.+.
T Consensus 5 i~qhmDI~epL~~Lk~LLe~Rl~i~L~~y~f~LQd~~L~~~k~LvdQcVqgeGlVQin 62 (89)
T 2juo_A 5 VSQAIDINEPIGNLKKLLEPRLQCSLDAHEICLQDIQLDPDRSLFDQGVKTDGTVQLS 62 (89)
T ss_dssp EEEEEESSSBGGGHHHHSHHHHCSCCSSCEEEETTEECCTTSBTTTSSCCCCSEEEEE
T ss_pred hhhhccccCcHHHHHHHHHHHhcCCcccCeEEeeccccCCCccHHHhhcccccEEEEE
Confidence 3344556678999999999999999999999988888999999999999987777775
No 187
>1oew_A Endothiapepsin; hydrolase, aspartic proteinase mechanism, atomic resolution, succinimide, anisotropic refinement; HET: SUI; 0.9A {Cryphonectria parasitica} SCOP: b.50.1.2 PDB: 1gkt_A* 1gvt_A* 1gvv_A* 1gvw_A* 1gvx_A* 1gvu_A* 1oex_A* 2jji_A* 2jjj_A* 2vs2_A* 3uri_A* 3urj_A* 3url_A* 3pww_A* 1e80_E* 1e81_E* 1e82_E* 1e5o_E* 1eed_P* 1epl_E* ...
Probab=87.59 E-value=1.3 Score=41.97 Aligned_cols=101 Identities=12% Similarity=0.074 Sum_probs=58.1
Q ss_pred eeecCe-----eEEEEEcCCccccccCHHHHHHcCCccccCCcceeEeecCcc--eeEEeEEEEEeEEEcCEEEe-----
Q 016931 201 MEVNGI-----PLKAFVDSGAQSTIISKSCAERCGLLRLLDDRYRGVAHGVGQ--SEILGRIHVAPIKIGNVFYP----- 268 (380)
Q Consensus 201 v~Ing~-----~v~alVDTGA~~siIs~~~a~rlgL~~~~~~~~~~~~~gvg~--~~~~g~i~~~~i~ig~~~~~----- 268 (380)
+.|+|. ...++||||.+.+.++.+.++++--.- ....+ ....|. ..+........+.+|+..+.
T Consensus 201 i~v~~~~~~~~~~~aiiDSGTt~~~lP~~~~~~l~~~i-~~a~~---~~~~g~~~~~C~~~~P~i~f~fgg~~~~ip~~~ 276 (329)
T 1oew_A 201 YAVGSGTFKSTSIDGIADTGTTLLYLPATVVSAYWAQV-SGAKS---SSSVGGYVFPCSATLPSFTFGVGSARIVIPGDY 276 (329)
T ss_dssp EEETTSCCEEEEEEEEECTTCCSEEECHHHHHHHHTTS-TTCEE---ETTTTEEEEETTCCCCCEEEEETTEEEEECHHH
T ss_pred EEECCeeccCCCceEEEeCCCCCEECCHHHHHHHHHhC-CCcEE---cCCCCEEEEECCCCCCcEEEEECCEEEEECHHH
Confidence 456664 467999999999999999988762210 00000 000010 00101112234455553332
Q ss_pred ------------EEEEEecC-CCCceeeeHHHHhhcCeEEEc-CCCEEEEc
Q 016931 269 ------------CSFVVLDS-PNMEFLFGLDMLRKHQCIIDL-KENVLRVG 305 (380)
Q Consensus 269 ------------~~~~Vl~~-~~~d~iLG~D~L~~~~~~ID~-~~~~l~i~ 305 (380)
|-+.+... .....|||-.||+.+-.+.|+ .+++|-|.
T Consensus 277 ~~~~~~~~~~~~C~~~i~~~~~~~~~iLG~~fl~~~y~vfD~~~~~riGfA 327 (329)
T 1oew_A 277 IDFGPISTGSSSCFGGIQSSAGIGINIFGDVALKAAFVVFNGATTPTLGFA 327 (329)
T ss_dssp HEEEESSTTCSEEEESEEESTTTSSEEECHHHHTTEEEEEECSSSCEEEEE
T ss_pred eeeeecCCCCCeEEEEEEeCCCCCceEEChHHhcCEEEEEECCCCceEEEe
Confidence 22222221 124589999999999999999 99998874
No 188
>3c9x_A Trichoderma reesei aspartic protease; aspartic proteinase, aspartyl protease, hydrolase; 1.70A {Trichoderma reesei} PDB: 3c9y_A* 3emy_A*
Probab=87.40 E-value=1.2 Score=42.15 Aligned_cols=101 Identities=14% Similarity=0.129 Sum_probs=57.0
Q ss_pred eeecCe-----eEEEEEcCCccccccCHHHHHHcCCccccCCcceeEeecCcc--eeEEeEEEEEeEEEcCEEEe-----
Q 016931 201 MEVNGI-----PLKAFVDSGAQSTIISKSCAERCGLLRLLDDRYRGVAHGVGQ--SEILGRIHVAPIKIGNVFYP----- 268 (380)
Q Consensus 201 v~Ing~-----~v~alVDTGA~~siIs~~~a~rlgL~~~~~~~~~~~~~gvg~--~~~~g~i~~~~i~ig~~~~~----- 268 (380)
+.|+|+ ...++||||.+.+.++.+.++++--.- ....+ ....|. ..+........+.+++..+.
T Consensus 202 i~v~~~~~~~~~~~aiiDSGTt~~~lp~~~~~~i~~~i-~~a~~---~~~~~~~~~~C~~~~P~i~f~f~g~~~~ip~~~ 277 (329)
T 3c9x_A 202 YSVGGGKLNRNSIDGIADTGTTLLLLDDNVVDAYYANV-QSAQY---DNQQEGVVFDCDEDLPSFSFGVGSSTITIPGDL 277 (329)
T ss_dssp EEETTCCCCSCCEEEEECTTCCSEEECHHHHHHHHTTC-TTCEE---ETTTTEEEEETTCCCCCEEEEETTEEEEECGGG
T ss_pred EEECCEeccCCCceEEEECCCCcEeCCHHHHHHHHHhC-CCcEE---cCCCCEEEEECCCCCCcEEEEECCEEEEECHHH
Confidence 346664 468999999999999999987753210 00000 000010 00000112223444442222
Q ss_pred ------------EEEEEecC-CCCceeeeHHHHhhcCeEEEcCCCEEEEc
Q 016931 269 ------------CSFVVLDS-PNMEFLFGLDMLRKHQCIIDLKENVLRVG 305 (380)
Q Consensus 269 ------------~~~~Vl~~-~~~d~iLG~D~L~~~~~~ID~~~~~l~i~ 305 (380)
|-+.+... .....|||-.||+.+-.+.|+.+++|-|.
T Consensus 278 ~~~~~~~~~~~~C~~~i~~~~~~~~~ILG~~fl~~~y~vfD~~~~riGfA 327 (329)
T 3c9x_A 278 LNLTPLEEGSSTCFGGLQSSSGIGINIFGDVALKAALVVFDLGNERLGWA 327 (329)
T ss_dssp GEEEESSTTCSEEEESEEECTTTTSEEECHHHHTTEEEEEETTTTEEEEE
T ss_pred eeeeccCCCCCeEEEEEEcCCCCCcEEEChHHhccEEEEEECCCCEEeEe
Confidence 22222222 12357999999999999999999999875
No 189
>3k1w_A Renin; protease, alternative splicing, aspartyl protease, cleavage on PAIR of basic residues, disease mutation, disulfide bond, glycoprotein; HET: BFX NDG HSQ; 1.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 3d91_A* 3g70_A* 3g6z_A* 3own_A* 2iko_A* 1bbs_A* 1rne_A* 2bkt_A* 2bks_A* 2iku_A* 2il2_A* 2ren_A* 2v0z_C* 2v10_C* 2v11_C* 2v12_C* 2v13_A* 2v16_C* 3g72_A* 3oot_A* ...
Probab=87.32 E-value=1.1 Score=42.59 Aligned_cols=99 Identities=19% Similarity=0.225 Sum_probs=59.0
Q ss_pred eeecCee------EEEEEcCCccccccCHHHHHHc----CCccccCCcceeEeecCcceeEEeEEEEEeEEEcCEEEeE-
Q 016931 201 MEVNGIP------LKAFVDSGAQSTIISKSCAERC----GLLRLLDDRYRGVAHGVGQSEILGRIHVAPIKIGNVFYPC- 269 (380)
Q Consensus 201 v~Ing~~------v~alVDTGA~~siIs~~~a~rl----gL~~~~~~~~~~~~~gvg~~~~~g~i~~~~i~ig~~~~~~- 269 (380)
+.|+|.. ..++||||.+.+.++.+.++++ +.....+ .+.. .+... .......+.+++..+.+
T Consensus 208 i~v~~~~~~~~~~~~~iiDsGtt~~~lP~~~~~~i~~~~~~~~~~~-g~~~---~C~~~---~~~p~i~f~f~g~~~~l~ 280 (341)
T 3k1w_A 208 VSVGSSTLLCEDGCLALVDTGASYISGSTSSIEKLMEALGAKKRLF-DYVV---KCNEG---PTLPDISFHLGGKEYTLT 280 (341)
T ss_dssp EEETTEEEECTTCEEEEECTTCSSEEECHHHHHHHHHHHTCEECSS-CEEE---EGGGG---GGCCCEEEEETTEEEEEC
T ss_pred EEECCEEeecCCCCEEEEECCCChhcCCHHHHHHHHHHcCCeecCC-CeEE---eCCCC---CcCCcEEEEECCEEEEEC
Confidence 3567763 5899999999999999887765 3211000 0000 00000 01122345556544432
Q ss_pred ----------------EEEEec-----CCCCceeeeHHHHhhcCeEEEcCCCEEEEcC
Q 016931 270 ----------------SFVVLD-----SPNMEFLFGLDMLRKHQCIIDLKENVLRVGG 306 (380)
Q Consensus 270 ----------------~~~Vl~-----~~~~d~iLG~D~L~~~~~~ID~~~~~l~i~~ 306 (380)
-+.+.. ......|||..||+.+-.+.|+.++++-|..
T Consensus 281 ~~~~~~~~~~~~~~~C~~~i~~~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~~igfA~ 338 (341)
T 3k1w_A 281 SADYVFQESYSSKKLCTLAIHAMDIPPPTGPTWALGATFIRKFYTEFDRRNNRIGFAL 338 (341)
T ss_dssp HHHHBCCSCCCTTSEEEBSEEECCCCTTTCSCEEECHHHHTTEEEEEETTTTEEEEEE
T ss_pred HHHheeEccCCCCCeEEeEEEecccCCCCCCeEEEChHHhcceEEEEeCCCCEEEEEE
Confidence 111222 1234689999999999999999999998863
No 190
>3rpf_C Molybdopterin converting factor, subunit 1 (MOAD); MCSG, PSI-biology, structural genomics, midwest center for S genomics, transferase; 1.90A {Helicobacter pylori}
Probab=87.25 E-value=1.8 Score=31.88 Aligned_cols=66 Identities=14% Similarity=0.198 Sum_probs=43.7
Q ss_pred CEEEEEeCCC-CEEEEEeCCCCCHHHHHHHHHHHhCCCC--cCeEEecCCeecCCcccchhcCCCCCcEEEEee
Q 016931 1 MRITVMTADE-QIISLDVDPHETVENVKALLEVETQVPL--QQQQLLYNGREMNNAEKLSALGVKDEDLVMMVS 71 (380)
Q Consensus 1 M~ItVk~~~g-~~~~i~V~~~~TV~~LK~~I~~~~gip~--~~q~Li~~Gk~L~D~~tL~~~gI~dg~~I~l~~ 71 (380)
|+|+|+.... +.-.+++ ...||.+|.+.+..+.++.. ....+..||+.+.+ .+.-+++||.|.+..
T Consensus 1 M~v~V~~fa~l~~~~~e~-~~~tv~~ll~~L~~~~~l~~~l~~~~vavN~~~v~~----~~~~l~~gDeV~i~P 69 (74)
T 3rpf_C 1 MMVEVRFFGPIKEENFFI-KANDLKELRAILQEKEGLKEWLGVCAIALNDHLIDN----LNTPLKDGDVISLLP 69 (74)
T ss_dssp CEEEEEECTTCCCCCEEE-ECSSHHHHHHHHHTCTTTTTTTTTCEEEESSSEECC----TTCCCCTTCEEEEEC
T ss_pred CEEEEEEEeecceeEEee-CCCcHHHHHHHHHHCcCHHHHhhccEEEECCEEcCC----CCcCCCCCCEEEEEC
Confidence 8899986531 1134666 56899999999986543322 33455568876543 245689999999874
No 191
>3lpj_A Beta-secretase 1; alzheimer'S, aspartyl protease, hydrolase; HET: TLA Z75; 1.79A {Homo sapiens} PDB: 3lpi_A* 3lpk_A* 3ohf_A* 3ohh_A* 3r2f_A* 3skf_A* 3skg_A* 4fse_A* 2hiz_A* 2p83_A* 2va7_A* 2va5_A* 2va6_A*
Probab=87.24 E-value=1.3 Score=44.13 Aligned_cols=87 Identities=24% Similarity=0.317 Sum_probs=54.6
Q ss_pred eeEEeeeec--CeeEEEEEcCCccccccC-HHHHHHcCCccccCC----cce------eEeecCcceeEEeEEEEEeEEE
Q 016931 196 MLYVDMEVN--GIPLKAFVDSGAQSTIIS-KSCAERCGLLRLLDD----RYR------GVAHGVGQSEILGRIHVAPIKI 262 (380)
Q Consensus 196 ~lyv~v~In--g~~v~alVDTGA~~siIs-~~~a~rlgL~~~~~~----~~~------~~~~gvg~~~~~g~i~~~~i~i 262 (380)
..|+++.|. +++++++||||++.+.+. ..| |......+. .+. .+.+|-|. ..|.+....|.|
T Consensus 75 ~Y~~~i~iGTP~Q~~~v~~DTGSs~lWV~~~~c---c~~~~~y~~~~SsT~~~~~~~~~i~Yg~Gs--~~G~~~~Dtv~i 149 (455)
T 3lpj_A 75 GYYVEMTVGSPPQTLNILVDTGSSNFAVGAAPH---PFLHRYYQRQLSSTYRDLRKGVYVPYTQGK--WEGELGTDLVSI 149 (455)
T ss_dssp EEEEEEEETTTTEEEEEEEETTCCCEEEECSCC---TTCSCCCCGGGCTTCEEEEEEEEEECSSCE--EEEEEEEEEEEC
T ss_pred EEEEEEEECCCCeEEEEEEcCCCcceEEecccc---cccCCcccCCCCCCcccCCccEEEEeCCeE--EEEEEEEEEEEE
Confidence 579999998 799999999999988884 333 322222211 111 13344444 479998999999
Q ss_pred cC---EEEeEEEEEec--------CCCCceeeeHHH
Q 016931 263 GN---VFYPCSFVVLD--------SPNMEFLFGLDM 287 (380)
Q Consensus 263 g~---~~~~~~~~Vl~--------~~~~d~iLG~D~ 287 (380)
|+ ..+...|.+.. ....|+||||-+
T Consensus 150 g~~~~~~~~~~~~~~~~~~~~~~~~~~~dGIlGLg~ 185 (455)
T 3lpj_A 150 PHGPNVTVRANIAAITESDKFFINGSNWEGILGLAY 185 (455)
T ss_dssp TTSCSCEEEEEEEEEEEEESCSCTTCCCCEEEECSC
T ss_pred CCCcceeeEEEEEEEEccCcccccCCCcceEEEeCc
Confidence 84 22222232221 245799999975
No 192
>3fv3_A SAPP1P-secreted aspartic protease 1; secreted aspartic protease, virulence factor, H; HET: STA; 1.85A {Candida parapsilosis} SCOP: b.50.1.0 PDB: 3tne_A*
Probab=87.01 E-value=1.1 Score=42.61 Aligned_cols=102 Identities=16% Similarity=0.219 Sum_probs=58.8
Q ss_pred eeecCeeE----EEEEcCCccccccCHHHHHHcCCccccCCcceeE--eecCcceeEE-eEEEEEeEEEc-CEEEe----
Q 016931 201 MEVNGIPL----KAFVDSGAQSTIISKSCAERCGLLRLLDDRYRGV--AHGVGQSEIL-GRIHVAPIKIG-NVFYP---- 268 (380)
Q Consensus 201 v~Ing~~v----~alVDTGA~~siIs~~~a~rlgL~~~~~~~~~~~--~~gvg~~~~~-g~i~~~~i~ig-~~~~~---- 268 (380)
+.|+|..+ .++||||.+.+.++.+.++++-- .+...+... ..|.....+. .......+.++ +..+.
T Consensus 204 i~v~g~~~~~~~~~iiDSGtt~~~lP~~~~~~i~~--~~~~~~~~~~~~~~~~~~~C~~~~~p~i~f~f~~g~~~~v~~~ 281 (339)
T 3fv3_A 204 VNLKGSSFSFGDGALLDSGTTLTYFPSDFAAQLAD--KAGARLVQVARDQYLYFIDCNTDTSGTTVFNFGNGAKITVPNT 281 (339)
T ss_dssp EEESSCEEEEEEEEEECTTBSSEEECHHHHHHHHH--HHTCEEEEEETTEEEEEECTTCCCCSEEEEEETTSCEEEEEGG
T ss_pred EEECCEeecCCccEEEeCCCCCEecCHHHHHHHHH--HcCCEEccccccCceEEEecCCCCCCcEEEEECCCCEEEECHH
Confidence 45777754 69999999999999988877521 011011000 0010000000 01122345553 43322
Q ss_pred ----------EEEEEecCCCCceeeeHHHHhhcCeEEEcCCCEEEEcC
Q 016931 269 ----------CSFVVLDSPNMEFLFGLDMLRKHQCIIDLKENVLRVGG 306 (380)
Q Consensus 269 ----------~~~~Vl~~~~~d~iLG~D~L~~~~~~ID~~~~~l~i~~ 306 (380)
|-+.+.. .-..|||..||+.+-.+.|+.++++-|..
T Consensus 282 ~~~~~~~~~~C~~~i~~--~~~~ilG~~fl~~~y~vfD~~~~~igfA~ 327 (339)
T 3fv3_A 282 EYVYQNGDGTCLWGIQP--SDDTILGDNFLRHAYLLYNLDANTISIAQ 327 (339)
T ss_dssp GGEEECSSSCEEESEEE--CSSCEECHHHHTTEEEEEETTTTEEEEEE
T ss_pred HheeeCCCCeEEEEEEe--CCcEEeChHHHhCEEEEEECCCCEEEEEe
Confidence 2222332 12479999999999999999999999964
No 193
>2llw_A Heat shock protein STI1; DP domain, alpha helix, chaperone; NMR {Saccharomyces cerevisiae}
Probab=86.83 E-value=2.6 Score=31.17 Aligned_cols=29 Identities=21% Similarity=0.379 Sum_probs=22.6
Q ss_pred CChHHHHHHHhcCHHHHHHHhhcCHHHHHHh
Q 016931 91 VNPAAFQQHIRNDANLMTQLFQSDPELAQVL 121 (380)
Q Consensus 91 ~~p~~~~q~~l~nP~~l~qL~~~nP~La~ai 121 (380)
..+++.+..+++||+++.-| +||+++.++
T Consensus 7 e~~ee~~~~~m~dPEi~~im--~DP~~~~~l 35 (71)
T 2llw_A 7 ETPEETYQRAMKDPEVAAIM--QDPVMQSIL 35 (71)
T ss_dssp SCHHHHHHHHHHSHHHHHHH--TCTHHHHHH
T ss_pred CCcHHHHHHHhcCHHHHHHh--CCHHHHHHH
Confidence 56777778888899888766 488888777
No 194
>1wkr_A Polyporopepsin; hydrolase, hydrolase-hydrolase inhibitor complex; HET: STA; 1.30A {Irpex lacteus} SCOP: b.50.1.2
Probab=86.28 E-value=0.79 Score=43.60 Aligned_cols=105 Identities=16% Similarity=0.268 Sum_probs=59.4
Q ss_pred EeeeecC-eeE----EEEEcCCccccccCHHHHHHcCCccccCCcceeEeecCcceeEE--eEEEEEeEEEcCEEEe---
Q 016931 199 VDMEVNG-IPL----KAFVDSGAQSTIISKSCAERCGLLRLLDDRYRGVAHGVGQSEIL--GRIHVAPIKIGNVFYP--- 268 (380)
Q Consensus 199 v~v~Ing-~~v----~alVDTGA~~siIs~~~a~rlgL~~~~~~~~~~~~~gvg~~~~~--g~i~~~~i~ig~~~~~--- 268 (380)
..+.|+| +.+ .++||||.+.+.++.+.++++ . ..+...+. ...|.-...+. .......+.+++..+.
T Consensus 193 ~~i~v~~~~~l~~~~~aiiDSGTt~~~lP~~~~~~l-~-~~~~a~~~-~~~g~~~~~C~~~~~~p~i~f~f~g~~~~i~~ 269 (340)
T 1wkr_A 193 QSIRYGSSTSILSSTAGIVDTGTTLTLIASDAFAKY-K-KATGAVAD-NNTGLLRLTTAQYANLQSLFFTIGGQTFELTA 269 (340)
T ss_dssp EEEEETTTEEEEEEEEEEECTTBCSEEECHHHHHHH-H-HHHTCEEC-TTTSSEEECHHHHHTCCCEEEEETTEEEEECT
T ss_pred eeEEECCCeEccCCCeEEEeCCcccccCCHHHHHHH-H-HhhCCEEc-CCCCeEEeeccccccCCcEEEEECCEEEEEcH
Confidence 4577887 544 799999999999999988876 1 11110000 00000000000 0011223344443322
Q ss_pred -------------------EEEEEec--C---CCCceeeeHHHHhhcCeEEEcCCCEEEEcC
Q 016931 269 -------------------CSFVVLD--S---PNMEFLFGLDMLRKHQCIIDLKENVLRVGG 306 (380)
Q Consensus 269 -------------------~~~~Vl~--~---~~~d~iLG~D~L~~~~~~ID~~~~~l~i~~ 306 (380)
|-+.+.. . .+...|||-.||+.+-.+.|+.+++|-|..
T Consensus 270 ~~yi~~~~~~~~~g~~~~~c~~~~~~~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~~igfA~ 331 (340)
T 1wkr_A 270 NAQIWPRNLNTAIGGSASSVYLIVGDLGSDSGEGLDFINGLTFLERFYSVYDTTNKRLGLAT 331 (340)
T ss_dssp GGGBCCGGGGGGGTCCSSCEEBCEEECSSCTTSSCCEEECHHHHTSEEEEEETTTTEEEEEE
T ss_pred HHhccccccccccCCCCceEEEEEecCCCCCCCCcceEeChHhhhheEEEEeCCCCeEEEEe
Confidence 2122222 1 123479999999999999999999999964
No 195
>3aup_A SBG7S, BG, basic 7S globulin; pepsin-like fold, plant protein; 1.91A {Glycine max}
Probab=86.22 E-value=1.9 Score=42.04 Aligned_cols=27 Identities=19% Similarity=0.329 Sum_probs=25.1
Q ss_pred ceeeeHHHHhhcCeEEEcCCCEEEE-cC
Q 016931 280 EFLFGLDMLRKHQCIIDLKENVLRV-GG 306 (380)
Q Consensus 280 d~iLG~D~L~~~~~~ID~~~~~l~i-~~ 306 (380)
..|||--||+.+-.+.|+.+++|-| ..
T Consensus 358 ~~ILG~~fl~~~yvvfD~~~~rIGf~A~ 385 (403)
T 3aup_A 358 EITLGARQLEENLVVFDLARSRVGFSTS 385 (403)
T ss_dssp SEEECHHHHTTSCEEEETTTTEEEEESS
T ss_pred cEEEChHHhcCeEEEEECCCCEEEEecc
Confidence 5799999999999999999999999 64
No 196
>1htr_B Gastricsin; aspartyl protease; 1.62A {Homo sapiens} SCOP: b.50.1.2 PDB: 1avf_A
Probab=85.92 E-value=1.9 Score=40.68 Aligned_cols=99 Identities=17% Similarity=0.242 Sum_probs=58.0
Q ss_pred eeecCee-------EEEEEcCCccccccCHHHHHHc----CCccccCCcceeEeecCcceeEEeEEEEEeEEEcCEEEe-
Q 016931 201 MEVNGIP-------LKAFVDSGAQSTIISKSCAERC----GLLRLLDDRYRGVAHGVGQSEILGRIHVAPIKIGNVFYP- 268 (380)
Q Consensus 201 v~Ing~~-------v~alVDTGA~~siIs~~~a~rl----gL~~~~~~~~~~~~~gvg~~~~~g~i~~~~i~ig~~~~~- 268 (380)
+.|+|+. ..++||||.+.+.++.+.++++ +........+.. -+... .......+.+++..+.
T Consensus 198 i~v~~~~~~~~~~~~~aiiDSGTt~~~lp~~~~~~l~~~~~~~~~~~g~~~~---~C~~~---~~~P~i~f~f~g~~~~i 271 (329)
T 1htr_B 198 FLIGGQASGWCSEGCQAIVDTGTSLLTVPQQYMSALLQATGAQEDEYGQFLV---NCNSI---QNLPSLTFIINGVEFPL 271 (329)
T ss_dssp EEETTEECCTTTTCEEEEECTTCCSEEEEGGGHHHHHHHHTCEECTTSCEEE---CGGGG---GGSCCEEEEETTEEEEE
T ss_pred EEECCceeeecCCCceEEEecCCccEECCHHHHHHHHHHhCCeecCCCeEEE---eCCCc---ccCCcEEEEECCEEEEE
Confidence 4566654 5799999999999998887765 221100000000 00000 0112234455554432
Q ss_pred ------------EEEEEecC-----CCC-ceeeeHHHHhhcCeEEEcCCCEEEEc
Q 016931 269 ------------CSFVVLDS-----PNM-EFLFGLDMLRKHQCIIDLKENVLRVG 305 (380)
Q Consensus 269 ------------~~~~Vl~~-----~~~-d~iLG~D~L~~~~~~ID~~~~~l~i~ 305 (380)
|-+.+... .+. ..|||-.||+.+-.+.|+.+++|-|.
T Consensus 272 ~~~~y~~~~~g~C~~~~~~~~~~~~~~~~~~iLG~~fl~~~yvvfD~~~~~igfa 326 (329)
T 1htr_B 272 PPSSYILSNNGYCTVGVEPTYLSSQNGQPLWILGDVFLRSYYSVYDLGNNRVGFA 326 (329)
T ss_dssp CHHHHEEECSSCEEESEEEECCCCTTSSCEEEECHHHHTTEEEEEETTTTEEEEE
T ss_pred CHHHhcccCCCEEEEEEEECCCCCCCCCceEEEChHHhccEEEEEECCCCEEEEE
Confidence 33223221 123 58999999999999999999999885
No 197
>3vf3_A Beta-secretase 1; structure-based drug design, hydrolase-hydrolase inhibitor C; HET: 0GS; 1.48A {Homo sapiens} PDB: 2f3e_A* 2f3f_A* 1ym2_A* 3dv1_A* 3dv5_A* 3k5c_A* 3k5f_A* 3k5g_A* 3pi5_A* 3qbh_A* 3duy_A* 3veu_A* 3vg1_A* 4d83_A* 4d88_A* 4d89_A* 4d8c_A* 3msk_A* 3k5d_A* 1ym4_A* ...
Probab=85.91 E-value=1.3 Score=43.14 Aligned_cols=88 Identities=23% Similarity=0.297 Sum_probs=54.6
Q ss_pred ceeEEeeeec--CeeEEEEEcCCccccccC-HHHHHHcCCccccCC----cce------eEeecCcceeEEeEEEEEeEE
Q 016931 195 VMLYVDMEVN--GIPLKAFVDSGAQSTIIS-KSCAERCGLLRLLDD----RYR------GVAHGVGQSEILGRIHVAPIK 261 (380)
Q Consensus 195 ~~lyv~v~In--g~~v~alVDTGA~~siIs-~~~a~rlgL~~~~~~----~~~------~~~~gvg~~~~~g~i~~~~i~ 261 (380)
...|+++.|. +++++++||||++.+-+. ..| |......+. .+. .+..|-|. ..|.+....|.
T Consensus 28 ~~Y~~~i~iGTP~q~~~v~~DTGSs~lWv~~~~c---~~~~~~y~~~~SsT~~~~~~~~~i~Yg~Gs--~~G~~~~D~v~ 102 (402)
T 3vf3_A 28 QGYYVEMTVGSPPQTLNILVDTGSSNFAVGAAPH---PFLHRYYQRQLSSTYRDLRKGVYVPYTQGK--WEGELGTDLVS 102 (402)
T ss_dssp TEEEEEEEETTTTEEEEEEEETTCCCEEEECSCC---TTCSCCCCGGGCTTCEEEEEEEEEECSSCE--EEEEEEEEEEE
T ss_pred CEEEEEEEECCCCeEEEEEEeCCCCceEEccCCC---CcccCCcCcccCcccccCCCEEEEEECcEE--EEEEEEEEEEE
Confidence 3689999998 899999999999988873 344 222221111 111 13344444 48989889999
Q ss_pred EcC-E--EEeEEEEEe--------cCCCCceeeeHHH
Q 016931 262 IGN-V--FYPCSFVVL--------DSPNMEFLFGLDM 287 (380)
Q Consensus 262 ig~-~--~~~~~~~Vl--------~~~~~d~iLG~D~ 287 (380)
||+ . .....+.+. .....|+||||-+
T Consensus 103 ig~~~~~~~~~~~~~~~~~~~~~~~~~~~dGIlGLg~ 139 (402)
T 3vf3_A 103 IPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAY 139 (402)
T ss_dssp CTTSCSCEEEEEEEEEEEEESCSCTTCCCCEEEECSC
T ss_pred ECCccccceeeeEEEEEccccccccCCCccceEEcCc
Confidence 984 2 222222221 1235799999974
No 198
>3aup_A SBG7S, BG, basic 7S globulin; pepsin-like fold, plant protein; 1.91A {Glycine max}
Probab=85.91 E-value=1.2 Score=43.56 Aligned_cols=93 Identities=16% Similarity=0.198 Sum_probs=55.7
Q ss_pred ceeEEeeeec--CeeEEEEEcCCccccccC-H-----------HHHH-HcCCcccc---------------CCcceeEee
Q 016931 195 VMLYVDMEVN--GIPLKAFVDSGAQSTIIS-K-----------SCAE-RCGLLRLL---------------DDRYRGVAH 244 (380)
Q Consensus 195 ~~lyv~v~In--g~~v~alVDTGA~~siIs-~-----------~~a~-rlgL~~~~---------------~~~~~~~~~ 244 (380)
...|+++.|. .+++.++||||++.+-+. . .|.. .|...... ......+..
T Consensus 21 ~~Y~~~i~iGTP~Q~~~v~~DTGSs~lWv~~~~~~~Sst~~~~~C~s~~C~~~~~~~c~~c~~~~~s~~~~~~~~~~~~Y 100 (403)
T 3aup_A 21 GLHWANLQKRTPLMQVPVLVDLNGNHLWVNCEQQYSSKTYQAPFCHSTQCSRANTHQCLSCPAASRPGCHKNTCGLMSTN 100 (403)
T ss_dssp CCEEEEEEETTTTEEEEEEEETTCSSEEEECSSCCCCSSCBCCCTTBHHHHHTTCCCEEECSSSCBTTBCSSEEEEEEEE
T ss_pred ceEEEEEECCCCCceeEEEEECCCCceeECCCCCCCCCCCCccCCCCccccCccccCccccCCCCCCCCCCCcceeEeec
Confidence 3578899998 789999999999998774 2 2210 11110000 001112334
Q ss_pred cCcceeEEeEEEEEeEEEcC-----------EEEe-EEEEEecC--------CCCceeeeHHH
Q 016931 245 GVGQSEILGRIHVAPIKIGN-----------VFYP-CSFVVLDS--------PNMEFLFGLDM 287 (380)
Q Consensus 245 gvg~~~~~g~i~~~~i~ig~-----------~~~~-~~~~Vl~~--------~~~d~iLG~D~ 287 (380)
|.......|.+-...|.||+ ..++ ..|.+... ...|+||||-+
T Consensus 101 ~~d~~~~~G~~~~Dtv~ig~~~g~~~~~~~~~~v~~~~Fg~~~~~~~~~~~~~~~dGIlGLg~ 163 (403)
T 3aup_A 101 PITQQTGLGELGEDVLAIHATQGSTQQLGPLVTVPQFLFSCAPSFLVQKGLPRNTQGVAGLGH 163 (403)
T ss_dssp TTTTEEEEEEEEEEEEEEEECCC----CCCEEEEEEEEEEEECGGGGSSSSSTTCCEEEECSS
T ss_pred CCCCceeeEEEEEEEEEecccCCccccccccccccCEEEECCcccccccCCCCCCceEEECCC
Confidence 43345677888888899976 3332 34554442 25799999864
No 199
>2bju_A Plasmepsin II; aspartic proteinase, drug design, malaria, aspartyl protease, glycoprotein, hydrolase, signal, zymogen; HET: IH4; 1.56A {Plasmodium falciparum} SCOP: b.50.1.2 PDB: 1pfz_A 1xdh_A* 1lf3_A 1w6h_A* 1w6i_A* 1lf4_A* 1lf2_A* 1lee_A* 1m43_A* 2igx_A* 1sme_A* 1me6_A* 1xe6_A* 1xe5_A* 2igy_A* 2r9b_A 3f9q_A 3qrv_A 3qs1_A* 2anl_A* ...
Probab=85.86 E-value=2.7 Score=42.10 Aligned_cols=102 Identities=17% Similarity=0.187 Sum_probs=59.4
Q ss_pred eeecCe---eEEEEEcCCccccccCHHHHHHcCCccccCCcceeEeec-CcceeEE-eEEEEEeEEEcCEEEe-------
Q 016931 201 MEVNGI---PLKAFVDSGAQSTIISKSCAERCGLLRLLDDRYRGVAHG-VGQSEIL-GRIHVAPIKIGNVFYP------- 268 (380)
Q Consensus 201 v~Ing~---~v~alVDTGA~~siIs~~~a~rlgL~~~~~~~~~~~~~g-vg~~~~~-g~i~~~~i~ig~~~~~------- 268 (380)
+.|+|. ...++||||.+.+.++.+.++.+--. +.... ...| .-...+. .......+.+||..+.
T Consensus 323 I~Vgg~~~~~~~aIiDSGTsl~~lP~~~~~~l~~~--i~~~~--~~~g~~~~v~C~~~~~P~itf~fgg~~~~l~~~~yi 398 (453)
T 2bju_A 323 AHVGNIMLEKANCIVDSGTSAITVPTDFLNKMLQN--LDVIK--VPFLPFYVTLCNNSKLPTFEFTSENGKYTLEPEYYL 398 (453)
T ss_dssp EEETTEEEEEEEEEECTTCCSEEECHHHHHHHTTT--SSCEE--CTTSSCEEEETTCTTCCCEEEECSSCEEEECHHHHE
T ss_pred EEECcEEeccccEEEcCCCCeEecCHHHHHHHHHH--hCCcc--cCCCceEEEecCCCCCCcEEEEECCEEEEECHHHhE
Confidence 567773 36799999999999999999876321 11000 0011 0000000 0112233444443322
Q ss_pred ----------EEEEEecCC--CCceeeeHHHHhhcCeEEEcCCCEEEEcC
Q 016931 269 ----------CSFVVLDSP--NMEFLFGLDMLRKHQCIIDLKENVLRVGG 306 (380)
Q Consensus 269 ----------~~~~Vl~~~--~~d~iLG~D~L~~~~~~ID~~~~~l~i~~ 306 (380)
|-+.+.... ....|||-.||+.+-.+.|+.+++|-|..
T Consensus 399 ~~~~~~g~~~C~~~~~~~~~~~~~~ILGd~Flr~~yvVFD~~n~rIGfA~ 448 (453)
T 2bju_A 399 QHIEDVGPGLCMLNIIGLDFPVPTFILGDPFMRKYFTVFDYDNHSVGIAL 448 (453)
T ss_dssp EECTTTSTTEEEECEEECCCSSCEEEECHHHHHHEEEEEETTTTEEEEEE
T ss_pred eecccCCCceEEEEEEeCCCCCCCEEECHHHhhcEEEEEECCCCEEEEEE
Confidence 322233322 23689999999999999999999998864
No 200
>2x0b_A Renin; hydrolase-hormone complex, hydrolase hormone complex, vasoconstrictor, glycoprotein, hypertension, serpins; 4.33A {Homo sapiens}
Probab=85.22 E-value=4.2 Score=39.54 Aligned_cols=98 Identities=20% Similarity=0.245 Sum_probs=58.2
Q ss_pred eeecCee------EEEEEcCCccccccCHHHHHHc----CCccccCCcceeEeecCcceeEEeEEEEEeEEEcCEEEe--
Q 016931 201 MEVNGIP------LKAFVDSGAQSTIISKSCAERC----GLLRLLDDRYRGVAHGVGQSEILGRIHVAPIKIGNVFYP-- 268 (380)
Q Consensus 201 v~Ing~~------v~alVDTGA~~siIs~~~a~rl----gL~~~~~~~~~~~~~gvg~~~~~g~i~~~~i~ig~~~~~-- 268 (380)
+.|+|.. ..|+||||.+.+.++.+.++.+ |... ....+...+..+ .......+.+||..+.
T Consensus 251 i~v~~~~~~~~~~~~aiiDTGTs~~~lP~~~~~~i~~~i~a~~-~~g~~~v~C~~~------~~~P~i~f~~~g~~~~l~ 323 (383)
T 2x0b_A 251 VSVGSSTLLCEDGCLALVDTGASYISGSTSSIEKLMEALGAKK-RLFDYVVKCNEG------PTLPDISFHLGGKEYTLT 323 (383)
T ss_dssp EEESSCCCBSTTCEEEEECTTCSSEEECHHHHHHHHHHHTCEE-CSSCEEEEGGGT------TTCCCEEEEETTEEEEEC
T ss_pred EEeCCceEEcCCCcEEEEcCCCceEEcCHHHHHHHHHHhCCcc-cCCcEEEecccc------ccCceEEEEECCEEEEEC
Confidence 4566654 6899999999999998887654 3211 110010001000 0112234555554433
Q ss_pred ---------------EE--EEEecC---CCCceeeeHHHHhhcCeEEEcCCCEEEEc
Q 016931 269 ---------------CS--FVVLDS---PNMEFLFGLDMLRKHQCIIDLKENVLRVG 305 (380)
Q Consensus 269 ---------------~~--~~Vl~~---~~~d~iLG~D~L~~~~~~ID~~~~~l~i~ 305 (380)
|- |.-.+. .....|||--||+.+-.+.|+.+++|-|.
T Consensus 324 ~~~yi~~~~~~~~~~C~~~~~~~~~~~~~~~~~ILGd~Fl~~~y~vfD~~~~rIGfA 380 (383)
T 2x0b_A 324 SADYVFQESYSSKKLCTLAIHAMDIPPPTGPTWALGATFIRKFYTEFDRRNNRIGFA 380 (383)
T ss_dssp HHHHBCCCCCCTTSEEEBSEEECCCCTTTCSCEEECHHHHTTEEEEEETTTTEEEEE
T ss_pred HHHhEeeccCCCCCeEEEEEEecccCCCCCCcEEEChHHhcceEEEEECCCCEEeEE
Confidence 22 121211 23458999999999999999999999885
No 201
>1tzs_A Cathepsin E; hydrolase, aspartic protease, activation intermediate; 2.35A {Homo sapiens}
Probab=85.13 E-value=1.8 Score=41.38 Aligned_cols=99 Identities=17% Similarity=0.210 Sum_probs=57.4
Q ss_pred eeecCee------EEEEEcCCccccccCHHHHHHc----CCccccCCcceeEeecCcceeEEeEEEEEeEEEcCEEE---
Q 016931 201 MEVNGIP------LKAFVDSGAQSTIISKSCAERC----GLLRLLDDRYRGVAHGVGQSEILGRIHVAPIKIGNVFY--- 267 (380)
Q Consensus 201 v~Ing~~------v~alVDTGA~~siIs~~~a~rl----gL~~~~~~~~~~~~~gvg~~~~~g~i~~~~i~ig~~~~--- 267 (380)
+.|+|.. ..++||||.+.+.++.+.++.+ |..... ..+...+.... ......+.+|+..+
T Consensus 210 i~v~~~~~~~~~~~~aiiDSGTs~~~lP~~~~~~l~~~~~~~~~~-g~~~~~C~~~~------~~P~i~f~f~g~~~~i~ 282 (351)
T 1tzs_A 210 IQVGGTVMFCSEGCQAIVDTGTSLITGPSDKIKQLQNAIGAAPVD-GEYAVECANLN------VMPDVTFTINGVPYTLS 282 (351)
T ss_dssp EEETTEEEECTTCEEEEECTTCSSEEECHHHHHHHHHHHTCEECS-SSEEECGGGGG------GSCCEEEEETTEEEEEC
T ss_pred EEECCceEEcCCCceEEeccCCcceeCCHHHHHHHHHHhCCcccC-CeEEEeCCCCc------cCCcEEEEECCEEEEEC
Confidence 5677765 4799999999999998887764 221100 00000000000 01112233333222
Q ss_pred --------------eEEEEEecC-----CCCceeeeHHHHhhcCeEEEcCCCEEEEcC
Q 016931 268 --------------PCSFVVLDS-----PNMEFLFGLDMLRKHQCIIDLKENVLRVGG 306 (380)
Q Consensus 268 --------------~~~~~Vl~~-----~~~d~iLG~D~L~~~~~~ID~~~~~l~i~~ 306 (380)
.|-+.+... .....|||-.||+.+-.+.|+.+++|-|..
T Consensus 283 ~~~yi~~~~~~~~~~C~~~~~~~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~rigfA~ 340 (351)
T 1tzs_A 283 PTAYTLLDFVDGMQFCSSGFQGLDIHPPAGPLWILGDVFIRQFYSVFDRGNNRVGLAP 340 (351)
T ss_dssp TTTSEECC-----CCEEESEEECCCCTTTCSCEEECHHHHHHEEEEEETTTTEEEEEE
T ss_pred HHHhEeeccCCCCCeEEEEEEECCCCCCCCCeEEEChHHhhheEEEEECCCCEEEEEE
Confidence 132223221 234689999999999999999999999964
No 202
>2f4m_B UV excision repair protein RAD23 homolog B; glycoproteins, ubiquitin-dependent protein degradation, NUCL excision repair, peptide:N-glycanase; 1.85A {Mus musculus} SCOP: a.189.1.1 PDB: 2f4o_B*
Probab=85.07 E-value=1.3 Score=31.94 Aligned_cols=53 Identities=23% Similarity=0.436 Sum_probs=32.5
Q ss_pred HHHhcCHHH--HHHHhhcCHHHHHHhcCCCHHHHHHHHHHhHHHHHHHHHhhHHHHHHhhCCC
Q 016931 98 QHIRNDANL--MTQLFQSDPELAQVLLGNDLNKLQDLLRERSRQRSELRRRQEEEMALLYADP 158 (380)
Q Consensus 98 q~~l~nP~~--l~qL~~~nP~La~ai~~~d~~~~~~~l~~~~~q~~~~~~~~~~el~~l~~dP 158 (380)
..++++|.+ |+++.++||++...+. +-+....++..+...+..+++-.+++.|
T Consensus 5 ~~Lr~~Pqf~~lR~~vq~NP~~L~~lL--------qql~~~nP~l~~~I~~n~e~Fl~ll~e~ 59 (61)
T 2f4m_B 5 EFLRNQPQFQQMRQIIQQNPSLLPALL--------QQIGRENPQLLQQISQHQEHFIQMLNEP 59 (61)
T ss_dssp GGGTTCHHHHHHHHHHHHCGGGHHHHH--------HHHHHHCHHHHHHHHHSHHHHHHHHTSC
T ss_pred HHHHcChHHHHHHHHHHHCHHHHHHHH--------HHHHhHCHHHHHHHHHCHHHHHHHHccc
Confidence 456678874 7888888998776552 2233333555555455555666666655
No 203
>2kvr_A Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubiquitin-like domain, UBL, ubiquitin specific protease, HOST-virus interaction, nucleus, protease; NMR {Homo sapiens}
Probab=84.97 E-value=0.86 Score=37.85 Aligned_cols=34 Identities=15% Similarity=0.097 Sum_probs=30.8
Q ss_pred EEEEeCCCCCHHHHHHHHHHHhCCCCcCeEEecC
Q 016931 13 ISLDVDPHETVENVKALLEVETQVPLQQQQLLYN 46 (380)
Q Consensus 13 ~~i~V~~~~TV~~LK~~I~~~~gip~~~q~Li~~ 46 (380)
..+.|..++|+.+||..|+..+|+|+++|+|+.-
T Consensus 58 ~~~rv~k~~~~~~~~~~va~~lg~~~~~~RlW~~ 91 (130)
T 2kvr_A 58 TVFKVLKNSSLAEFVQSLSQTMGFPQDQIRLWPM 91 (130)
T ss_dssp EEEECCTTSBHHHHHHHHHHHHCCCGGGCEEEEC
T ss_pred ceEEEeccCcHHHHHHHHHHHhCCCcccEEEEEe
Confidence 4678889999999999999999999999999853
No 204
>2qzx_A Candidapepsin-5; aspartic proteinase, aspartyl protease, CL PAIR of basic residues, glycoprotein, protease, secreted; HET: STA; 2.50A {Candida albicans}
Probab=84.85 E-value=5.5 Score=37.62 Aligned_cols=98 Identities=14% Similarity=0.217 Sum_probs=57.9
Q ss_pred eeecCee----EEEEEcCCccccccCHHHHHHc----CCccccCCcce-eEeecCcceeEEeEEEEEeEEE-cCEEEeE-
Q 016931 201 MEVNGIP----LKAFVDSGAQSTIISKSCAERC----GLLRLLDDRYR-GVAHGVGQSEILGRIHVAPIKI-GNVFYPC- 269 (380)
Q Consensus 201 v~Ing~~----v~alVDTGA~~siIs~~~a~rl----gL~~~~~~~~~-~~~~gvg~~~~~g~i~~~~i~i-g~~~~~~- 269 (380)
+.|+|+. ..++||||.+.+.++.+.++++ +-....+.... .....+.. .....+.+ |+..+.+
T Consensus 202 i~v~g~~~~~~~~aiiDSGTt~~~lP~~~~~~l~~~~~~~~~~~~~~~~~~~~~C~~------~p~i~f~f~~g~~~~i~ 275 (342)
T 2qzx_A 202 VNVRGRNVDANTNVLLDSGTTISYFTRSIVRNILYAIGAQMKFDSAGNKVYVADCKT------SGTIDFQFGNNLKISVP 275 (342)
T ss_dssp EEETTEEEEEEEEEEECTTCSSEEECHHHHHHHHHHHTCEEEECTTSCEEEEECTTC------CCEEEEEETTTEEEEEE
T ss_pred EEECCEecCCCcCEEEeCCCCCEEcCHHHHHHHHHHhCCeeeeccCCCcEEEEECCC------CCcEEEEECCCcEEEEc
Confidence 5677865 4689999999999999888765 22110010000 00000100 12234455 3433322
Q ss_pred -------------------EEEEecCCCCceeeeHHHHhhcCeEEEcCCCEEEEcC
Q 016931 270 -------------------SFVVLDSPNMEFLFGLDMLRKHQCIIDLKENVLRVGG 306 (380)
Q Consensus 270 -------------------~~~Vl~~~~~d~iLG~D~L~~~~~~ID~~~~~l~i~~ 306 (380)
-+.+... ...|||-.||+.+-.+.|+.+++|-|..
T Consensus 276 ~~~~~~~~~~~~~~~~~~C~~~i~~~--~~~iLG~~fl~~~y~vfD~~~~~igfA~ 329 (342)
T 2qzx_A 276 VSEFLFQTYYTSGKPFPKCEVRIRES--EDNILGDNFLRSAYVVYNLDDKKISMAP 329 (342)
T ss_dssp GGGGEECCBCTTSCBCSSEEESEEEC--SSCEECHHHHTTEEEEEETTTTEEEEEE
T ss_pred HHHhcccccccCCCCCCccEEEEecC--CCcEeChHhhhcEEEEEECCCCEEEEEe
Confidence 2222222 2479999999999999999999999964
No 205
>2qp8_A Beta-secretase 1; BACE1, protease, alternative splicing, aspartyl protease, glycoprotein, hydrolase, membrane, transmembrane, zymogen; HET: TAR SC7; 1.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 2qk5_A* 2qmf_A* 2qmg_A* 2qmd_A* 4djx_A* 3l59_A* 3l5b_A* 3l5c_A* 3l58_A* 3l5d_A* 3l5f_A* 4dju_A* 4djv_A* 4djw_A* 3l5e_A* 4djy_A* 2zhv_A 2zhs_A 2zhr_A 2zhu_A ...
Probab=84.67 E-value=1.7 Score=42.28 Aligned_cols=90 Identities=22% Similarity=0.282 Sum_probs=53.5
Q ss_pred eeEEeeeec--CeeEEEEEcCCccccccC-HHHHHHcCC-ccccCCcce------eEeecCcceeEEeEEEEEeEEEc-C
Q 016931 196 MLYVDMEVN--GIPLKAFVDSGAQSTIIS-KSCAERCGL-LRLLDDRYR------GVAHGVGQSEILGRIHVAPIKIG-N 264 (380)
Q Consensus 196 ~lyv~v~In--g~~v~alVDTGA~~siIs-~~~a~rlgL-~~~~~~~~~------~~~~gvg~~~~~g~i~~~~i~ig-~ 264 (380)
..|+++.|. +++++++||||++.+.+. ..|....+. .......+. .+..|-|. ..|.+....|.|| +
T Consensus 22 ~Y~~~i~iGTP~Q~~~v~~DTGSs~lWv~~~~c~~~~~~y~~~~SsT~~~~~~~~~i~Yg~Gs--~~G~~~~Dtv~ig~g 99 (395)
T 2qp8_A 22 GYYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPFLHRYYQRQLSSTYRDLRKGVYVPYTQGK--WEGELGTDLVSIPHG 99 (395)
T ss_dssp EEEEEEEETTTTEEEEEEEETTCCCEEEECSCCTTCSCCCCGGGCTTCEEEEEEEEEECSSCE--EEEEEEEEEEECTTS
T ss_pred eEEEEEEecCCCceEEEEEecCCCceEEECCCCccccCCcCcccCCCceeCCceEEEEECCcE--EEEEEEeEEEEECCC
Confidence 478899998 899999999999999874 334221111 111111111 13344444 3688888899998 4
Q ss_pred E--EEeEEEEEec--------CCCCceeeeHHH
Q 016931 265 V--FYPCSFVVLD--------SPNMEFLFGLDM 287 (380)
Q Consensus 265 ~--~~~~~~~Vl~--------~~~~d~iLG~D~ 287 (380)
. .....|.... ....|+||||-+
T Consensus 100 ~~~~~~~~~~~~~~~~~~f~~~~~~dGIlGLg~ 132 (395)
T 2qp8_A 100 PNVTVRANIAAITESDKFFINGSNWEGILGLAY 132 (395)
T ss_dssp CSCEEEEEEEEEEEEESCSCTTCCCCEEEECSC
T ss_pred CCceEEEEEEEEEccCcccccccCccceEEcCc
Confidence 2 2222232221 235799999875
No 206
>1tyg_B YJBS; alpha beta barrel, protein-protein complex, THis, BIOS protein; 3.15A {Bacillus subtilis} SCOP: d.15.3.2
Probab=84.39 E-value=1.4 Score=33.88 Aligned_cols=52 Identities=13% Similarity=0.182 Sum_probs=38.8
Q ss_pred EEeCCC-CCHHHHHHHHHHHhCCCCcCeEEecCCeecCCcccchhcCCCCCcEEEEee
Q 016931 15 LDVDPH-ETVENVKALLEVETQVPLQQQQLLYNGREMNNAEKLSALGVKDEDLVMMVS 71 (380)
Q Consensus 15 i~V~~~-~TV~~LK~~I~~~~gip~~~q~Li~~Gk~L~D~~tL~~~gI~dg~~I~l~~ 71 (380)
++++.. .||.+|.+.+ ++++....+..||..+..+ ...+.-+++||.|-++.
T Consensus 30 ~el~~~~~Tv~dLL~~L----~~~~~~vaVavNg~iV~~~-~~~~~~L~dGD~Vei~~ 82 (87)
T 1tyg_B 30 VKWKKDTGTIQDLLASY----QLENKIVIVERNKEIIGKE-RYHEVELCDRDVIEIVH 82 (87)
T ss_dssp ECCSSSCCBHHHHHHHT----TCTTSCCEEEETTEEECGG-GTTTSBCCSSSEEEEEE
T ss_pred EECCCCCCcHHHHHHHh----CCCCCCEEEEECCEECChh-hcCCcCCCCCCEEEEEc
Confidence 556666 8999998875 6777777777899887533 34455689999998875
No 207
>1mpp_A Pepsin; hydrolase(acid proteinase); 2.00A {Rhizomucor pusillus} SCOP: b.50.1.2 PDB: 2asi_A* 2rmp_A*
Probab=84.35 E-value=1.3 Score=42.47 Aligned_cols=29 Identities=21% Similarity=0.287 Sum_probs=25.7
Q ss_pred CCceeeeHHHHhhcCeEEEcCCCEEEEcC
Q 016931 278 NMEFLFGLDMLRKHQCIIDLKENVLRVGG 306 (380)
Q Consensus 278 ~~d~iLG~D~L~~~~~~ID~~~~~l~i~~ 306 (380)
....|||-.||+.+-.+.|+.+++|-|..
T Consensus 325 ~~~~iLG~~fl~~~yvvfD~~~~~igfa~ 353 (361)
T 1mpp_A 325 GNQFIVGNLFLRFFVNVYDFGKNRIGFAP 353 (361)
T ss_dssp SSCCEEEHHHHTTEEEEEETTTTEEEEEE
T ss_pred CCCEEEChHHhccEEEEEECCCCEEEEEE
Confidence 34689999999999999999999999964
No 208
>1pve_A HHR23B, UV excision repair protein RAD23 homolog B; XPC binding domain, solution structure, nucleotide excision repair, chaps, DNA binding protein; NMR {Homo sapiens} SCOP: a.189.1.1
Probab=84.27 E-value=0.55 Score=34.99 Aligned_cols=55 Identities=22% Similarity=0.405 Sum_probs=32.6
Q ss_pred HHHhcCHH--HHHHHhhcCHHHHHHhcCCCHHHHHHHHHHhHHHHHHHHHhhHHHHHHhhCCCcc
Q 016931 98 QHIRNDAN--LMTQLFQSDPELAQVLLGNDLNKLQDLLRERSRQRSELRRRQEEEMALLYADPFD 160 (380)
Q Consensus 98 q~~l~nP~--~l~qL~~~nP~La~ai~~~d~~~~~~~l~~~~~q~~~~~~~~~~el~~l~~dP~~ 160 (380)
..++++|. .|+++.++||++...+. +-+...+++..++..+..+++-.|++.|.+
T Consensus 7 ~~Lr~~Pqf~qlR~~vqqNP~lL~~lL--------qqL~~~NPqL~q~I~~n~e~Fl~ll~e~~~ 63 (72)
T 1pve_A 7 EFLRNQPQFQQMRQIIQQNPSLLPALL--------QQIGRENPQLLQQISQHQEHFIQMLNEPVQ 63 (72)
T ss_dssp GGGTTCTTTTTHHHHHTTCGGGHHHHH--------HHHHTTCHHHHHHHHTTHHHHHHHHHSCSC
T ss_pred HHHHcChHHHHHHHHHHHCHHHHHHHH--------HHHHhHCHHHHHHHHHCHHHHHHHHcCCcc
Confidence 45667776 37888888998765542 223333355545544555566666666644
No 209
>2ewy_A Beta-secretase 2; BACE2, aspartic protease, hydrolase; HET: DBO; 3.10A {Homo sapiens}
Probab=84.23 E-value=2.6 Score=40.55 Aligned_cols=90 Identities=14% Similarity=0.152 Sum_probs=53.5
Q ss_pred eeEEeeeec--CeeEEEEEcCCccccccC-HHHHHHcCC-ccccCCcc------eeEeecCcceeEEeEEEEEeEEEcC-
Q 016931 196 MLYVDMEVN--GIPLKAFVDSGAQSTIIS-KSCAERCGL-LRLLDDRY------RGVAHGVGQSEILGRIHVAPIKIGN- 264 (380)
Q Consensus 196 ~lyv~v~In--g~~v~alVDTGA~~siIs-~~~a~rlgL-~~~~~~~~------~~~~~gvg~~~~~g~i~~~~i~ig~- 264 (380)
..|+++.|. .++++++||||++.+-+. ..|....+. .......+ ..+..|-|. ..|.+....|.|++
T Consensus 14 ~Y~~~i~iGTP~q~~~v~~DTGSs~lWv~~~~c~~~~~~f~~~~SsT~~~~~~~~~i~Yg~Gs--~~G~~~~Dtv~i~~~ 91 (383)
T 2ewy_A 14 GYYLEMLIGTPPQKLQILVDTGSSNFAVAGTPHSYIDTYFDTERSSTYRSKGFDVTVKYTQGS--WTGFVGEDLVTIPKG 91 (383)
T ss_dssp EEEEEEEETTTTEEEEEEEETTCCCEEEECSCBTTBSCCCCGGGCTTCEEEEEEEEEECSSCE--EEEEEEEEEEEETTT
T ss_pred cEEEEEEecCCCceEEEEEecCCCceEEecCCCCccccCcccccCccceeCCceEEEEECCcE--EEEEEEEEEEEECCC
Confidence 478999998 899999999999999774 344221111 11111111 123344444 47888888999985
Q ss_pred EE--EeEEEEEec--------CCCCceeeeHHH
Q 016931 265 VF--YPCSFVVLD--------SPNMEFLFGLDM 287 (380)
Q Consensus 265 ~~--~~~~~~Vl~--------~~~~d~iLG~D~ 287 (380)
.. ....|.... ....|+||||-+
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~dGilGLg~ 124 (383)
T 2ewy_A 92 FNTSFLVNIATIFESENFFLPGIKWNGILGLAY 124 (383)
T ss_dssp EEEEEEEEEEEEEEEESCSCTTCCCCEEEECSC
T ss_pred ccceeEEEEEEEEeecceeeccCcCceEEecCc
Confidence 22 222232221 135799999864
No 210
>1j71_A Candidapepsin, aspartic proteinase; candida tropicalis aspartic protease, SAPT1, hydrolase; 1.80A {Candida tropicalis} SCOP: b.50.1.2
Probab=83.87 E-value=3 Score=39.41 Aligned_cols=99 Identities=17% Similarity=0.292 Sum_probs=57.2
Q ss_pred eeecCee----EEEEEcCCccccccCHHHHHHcCCccccCCcceeEeec-Ccc-eeEEeEEEEEeEEE-cCEEEe-----
Q 016931 201 MEVNGIP----LKAFVDSGAQSTIISKSCAERCGLLRLLDDRYRGVAHG-VGQ-SEILGRIHVAPIKI-GNVFYP----- 268 (380)
Q Consensus 201 v~Ing~~----v~alVDTGA~~siIs~~~a~rlgL~~~~~~~~~~~~~g-vg~-~~~~g~i~~~~i~i-g~~~~~----- 268 (380)
+.|+|+. ..++||||.+.+.++.+.++++-- .+..... ..+ .-. ..+. ......+.+ |+..+.
T Consensus 202 i~v~g~~~~~~~~~iiDSGTt~~~lP~~~~~~l~~--~~~~~~~--~~~~~~~~~~C~-~~p~i~f~f~~g~~~~i~~~~ 276 (334)
T 1j71_A 202 INFDGTSVSTNADVVLDSGTTITYFSQSTADKFAR--IVGATWD--SRNEIYRLPSCD-LSGDAVFNFDQGVKITVPLSE 276 (334)
T ss_dssp EEETTEEEEEEEEEEECTTCSSEEECHHHHHHHHH--HHTCEEE--TTTTEEECSSSC-CCSEEEEEESTTCEEEEEGGG
T ss_pred EEECCEeccCCccEEEeCCCCcEecCHHHHHHHHH--HcCCccc--CCCceEEEEcCC-CCCceEEEEcCCcEEEECHHH
Confidence 5577765 468999999999999988876521 0010000 000 000 0000 012223444 333222
Q ss_pred ----------EEEEEecCCCCceeeeHHHHhhcCeEEEcCCCEEEEcC
Q 016931 269 ----------CSFVVLDSPNMEFLFGLDMLRKHQCIIDLKENVLRVGG 306 (380)
Q Consensus 269 ----------~~~~Vl~~~~~d~iLG~D~L~~~~~~ID~~~~~l~i~~ 306 (380)
|-+.+... ...|||-.||+.+-.+.|+.+++|-|..
T Consensus 277 y~~~~~~~~~C~~~i~~~--~~~iLG~~fl~~~y~vfD~~~~~igfA~ 322 (334)
T 1j71_A 277 LILKDSDSSICYFGISRN--DANILGDNFLRRAYIVYDLDDKTISLAQ 322 (334)
T ss_dssp GEEECSSSSCEEESEEEC--TTCEECHHHHTTEEEEEETTTTEEEEEE
T ss_pred heeecCCCCeeEEEEeEC--CCcEEChHhhccEEEEEECCCCEEEEEe
Confidence 32222222 2479999999999999999999999964
No 211
>1f0z_A THis protein; ubiquitin fold, transport protein; NMR {Escherichia coli} SCOP: d.15.3.2 PDB: 1zud_2
Probab=83.07 E-value=1.4 Score=31.62 Aligned_cols=61 Identities=18% Similarity=0.247 Sum_probs=42.8
Q ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCCCcCeEEecCCeecCCcccchhcCCCCCcEEEEee
Q 016931 1 MRITVMTADEQIISLDVDPHETVENVKALLEVETQVPLQQQQLLYNGREMNNAEKLSALGVKDEDLVMMVS 71 (380)
Q Consensus 1 M~ItVk~~~g~~~~i~V~~~~TV~~LK~~I~~~~gip~~~q~Li~~Gk~L~D~~tL~~~gI~dg~~I~l~~ 71 (380)
|+|+| +|+. +++....||.+|.+.+ ++++....+..||+.+..+ ...+.-+++||.|.++.
T Consensus 1 m~i~v---Ng~~--~~~~~~~tv~~ll~~l----~~~~~~v~vavN~~~v~~~-~~~~~~L~~gD~v~i~~ 61 (66)
T 1f0z_A 1 MQILF---NDQA--MQCAAGQTVHELLEQL----DQRQAGAALAINQQIVPRE-QWAQHIVQDGDQILLFQ 61 (66)
T ss_dssp CCEEE---SSCE--ECCCTTCCHHHHHHHH----TCCCSSEEEEETTEEECHH-HHTTCCCCTTEEECEEE
T ss_pred CEEEE---CCEE--EEcCCCCcHHHHHHHc----CCCCCCEEEEECCEECCch-hcCCcCCCCCCEEEEEe
Confidence 55544 4554 4567778999999876 5667777777899877532 23345689999998874
No 212
>3pvk_A Candidapepsin-2; hydrolase; 1.27A {Candida albicans} SCOP: b.50.1.2 PDB: 1eag_A 3q70_A* 1zap_A* 2qzw_A 2h6t_A* 2h6s_A*
Probab=82.75 E-value=0.76 Score=43.61 Aligned_cols=101 Identities=17% Similarity=0.260 Sum_probs=57.4
Q ss_pred eeecCee-----EEEEEcCCccccccCHHHHHHcCCccccCCcceeEeecCc--ceeEEeEEEEEeEEEc-CEEEe----
Q 016931 201 MEVNGIP-----LKAFVDSGAQSTIISKSCAERCGLLRLLDDRYRGVAHGVG--QSEILGRIHVAPIKIG-NVFYP---- 268 (380)
Q Consensus 201 v~Ing~~-----v~alVDTGA~~siIs~~~a~rlgL~~~~~~~~~~~~~gvg--~~~~~g~i~~~~i~ig-~~~~~---- 268 (380)
+.|+|+. ..++||||.+.+.++.+.++++-- .+.........|.+ ...+. ......+.++ +..+.
T Consensus 201 i~v~g~~~~~~~~~~iiDSGtt~~~lP~~~~~~i~~--~~~~~~~~~~~~~~~~~~~C~-~~p~i~f~f~~g~~~~vp~~ 277 (342)
T 3pvk_A 201 VEVSGKTINTDNVDVLLDSGTTITYLQQDLADQIIK--AFNGKLTQDSNGNSFYEVDCN-LSGDVVFNFSKNAKISVPAS 277 (342)
T ss_dssp EEETTEEEEEEEEEEEECTTCSSEEECHHHHHHHHH--HTTCEEEECTTSCEEEEECSC-CCSEEEEEESTTCEEEEEGG
T ss_pred EEECCEEecCCCceEEEeCCCCCeecCHHHHHHHHH--HcCCeecccCCCceEEEEecC-CCCceEEEECCCCEEEEcHH
Confidence 4577775 579999999999999988876521 00100000000000 00000 0122234444 22222
Q ss_pred ----------------EEEEEecCCCCceeeeHHHHhhcCeEEEcCCCEEEEcC
Q 016931 269 ----------------CSFVVLDSPNMEFLFGLDMLRKHQCIIDLKENVLRVGG 306 (380)
Q Consensus 269 ----------------~~~~Vl~~~~~d~iLG~D~L~~~~~~ID~~~~~l~i~~ 306 (380)
|-+.+... -..|||..||+.+-.+.|+.++++-|..
T Consensus 278 ~~~~~~~~~~g~~~~~C~~~i~~~--~~~ilG~~fl~~~y~vfD~~~~~igfA~ 329 (342)
T 3pvk_A 278 EFAASLQGDDGQPYDKCQLLFDVN--DANILGDNFLRSAYIVYDLDDNEISLAQ 329 (342)
T ss_dssp GGEEC----------CEEESEEEC--TTCEECHHHHTTEEEEEETTTTEEEEEE
T ss_pred HheeeccccCCCcCCeeEEEEeeC--CCeEeCHHHHhcEEEEEECCCCEEEEEe
Confidence 22222222 2469999999999999999999999964
No 213
>3psg_A Pepsinogen; hydrolase(acid proteinase zymogen); 1.65A {Sus scrofa} SCOP: b.50.1.2 PDB: 2psg_A 4pep_A* 3pep_A* 1f34_A* 1psa_A* 1yx9_A 5pep_A 1flh_A 1qrp_E* 1psn_A* 1pso_E* 3utl_A
Probab=82.72 E-value=4.6 Score=38.92 Aligned_cols=99 Identities=17% Similarity=0.222 Sum_probs=58.0
Q ss_pred eeecCee------EEEEEcCCccccccCHHHHHHc----CCccccCCcceeEeecCcceeEEeEEEEEeEEEcCEEEeE-
Q 016931 201 MEVNGIP------LKAFVDSGAQSTIISKSCAERC----GLLRLLDDRYRGVAHGVGQSEILGRIHVAPIKIGNVFYPC- 269 (380)
Q Consensus 201 v~Ing~~------v~alVDTGA~~siIs~~~a~rl----gL~~~~~~~~~~~~~gvg~~~~~g~i~~~~i~ig~~~~~~- 269 (380)
+.|+|.. ..++||||.+.+.++.+.++.+ |........+ ...+... .......+.+|+..+++
T Consensus 241 i~v~g~~~~~~~~~~aiiDTGTs~~~lP~~~~~~i~~~i~a~~~~~g~~---~v~C~~~---~~lP~i~f~~~g~~~~l~ 314 (370)
T 3psg_A 241 ITMDGETIACSGGCQAIVDTGTSLLTGPTSAIANIQSDIGASENSDGEM---VISCSSI---DSLPDIVFTIDGVQYPLS 314 (370)
T ss_dssp EESSSSEEECTTCEEEEECTTCCSEEEEHHHHHHHHHHTTCEECTTCCE---ECCGGGG---GGCCCEEEEETTEEEEEC
T ss_pred EEECCEEEecCCCceEEEcCCCCcEECCHHHHHHHHHHhCCcccCCCcE---EEECCCc---ccCCcEEEEECCEEEEEC
Confidence 3467653 5799999999999998887765 3211000000 0001100 01123345556644432
Q ss_pred ------------EEEE--ecC---CCCceeeeHHHHhhcCeEEEcCCCEEEEc
Q 016931 270 ------------SFVV--LDS---PNMEFLFGLDMLRKHQCIIDLKENVLRVG 305 (380)
Q Consensus 270 ------------~~~V--l~~---~~~d~iLG~D~L~~~~~~ID~~~~~l~i~ 305 (380)
-+.+ .+. .+...|||-.||+.+-.+.|+.++++-|.
T Consensus 315 ~~~yi~~~~~~C~~~~~~~~~~~~~~~~~ILG~~Fl~~~y~vfD~~~~riGfA 367 (370)
T 3psg_A 315 PSAYILQDDDSCTSGFEGMDVPTSSGELWILGDVFIRQYYTVFDRANNKVGLA 367 (370)
T ss_dssp HHHHEEECSSCEEESEEEECCCTTSCCEEEECHHHHTTEEEEEETTTTEEEEE
T ss_pred HHHhcccCCCEEEEEEEeCCCCCCCCCcEEeChHHhcceEEEEECCCCEEEEE
Confidence 2222 221 12238999999999999999999999885
No 214
>3kuz_A Plexin-C1; structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}
Probab=82.12 E-value=9 Score=31.46 Aligned_cols=62 Identities=15% Similarity=0.237 Sum_probs=42.8
Q ss_pred CEEEEEeCCCCCHHHHHHHHHHH----hCCCC----cCeEEec-CC---eecC----------Cc----ccchhcCCCCC
Q 016931 11 QIISLDVDPHETVENVKALLEVE----TQVPL----QQQQLLY-NG---REMN----------NA----EKLSALGVKDE 64 (380)
Q Consensus 11 ~~~~i~V~~~~TV~~LK~~I~~~----~gip~----~~q~Li~-~G---k~L~----------D~----~tL~~~gI~dg 64 (380)
..+.+.|-..+||.++|++|-.. .|+|- +.+.|-| .| .+|. +. .||+.|+|.||
T Consensus 39 ~~v~VkVLdCDTItQVKEKILdavYk~k~~pys~r~~d~dLEwr~g~~~~~L~D~D~tS~~~e~~wkrLNTL~HY~V~Dg 118 (126)
T 3kuz_A 39 RNISVNVLDCDTIGQAKEKIFQAFLSKNGSPYGLQLNEIGLELQMGTRQKELLDIDSSSVILEDGITKLNTIGHYEISNG 118 (126)
T ss_dssp CEEEEEEETTCBHHHHHHHHHHHHHHHHSSCCSSCGGGEEEEEEETTEEEEECSSCTTCCBCTTSCBCCCBTGGGTCCTT
T ss_pred CceEeeeecCCcHHHHHHHHHHHHhccCCCcCCCCccccceEEecCCCcceeeccCCcceEecCCeeEeccccccCCCCC
Confidence 45788888899999999988654 36654 3444544 12 2232 21 37899999999
Q ss_pred cEEEEeec
Q 016931 65 DLVMMVSN 72 (380)
Q Consensus 65 ~~I~l~~~ 72 (380)
.+|-++++
T Consensus 119 atlal~kk 126 (126)
T 3kuz_A 119 STIKVFKK 126 (126)
T ss_dssp CEEEEEEC
T ss_pred CEEEEeeC
Confidence 99988753
No 215
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=79.86 E-value=5.9 Score=30.60 Aligned_cols=45 Identities=11% Similarity=0.119 Sum_probs=35.8
Q ss_pred EEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCCCcC-eEEecCC
Q 016931 2 RITVMTADEQIISLDVDPHETVENVKALLEVETQVPLQQ-QQLLYNG 47 (380)
Q Consensus 2 ~ItVk~~~g~~~~i~V~~~~TV~~LK~~I~~~~gip~~~-q~Li~~G 47 (380)
+|++.. +|..+.+.++++.+..+|.+++...++++..+ ..+.|..
T Consensus 8 kvK~~~-~gdi~~~~v~~~i~~~~L~~kv~~~~~~~~~~~f~lky~D 53 (89)
T 1vd2_A 8 RVKAYY-RGDIMITHFEPSISFEGLCNEVRDMCSFDNEQLFTMKWID 53 (89)
T ss_dssp EEEEES-SSCEEEEEECTTCCHHHHHHHHHHHTTCCSSCCEEEEECC
T ss_pred EEEEEe-CCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEEEEC
Confidence 334443 57889999999999999999999999988655 6676754
No 216
>2qsf_X RAD23, UV excision repair protein RAD23; alpha-beta structure, beta hairpin, transglutaminase fold, DNA-damage recognition, DNA repair; HET: DNA; 2.35A {Saccharomyces cerevisiae} PDB: 2qsg_X* 2qsh_X* 1x3z_B* 1x3w_B* 3esw_B*
Probab=79.77 E-value=0.68 Score=40.34 Aligned_cols=57 Identities=19% Similarity=0.207 Sum_probs=33.8
Q ss_pred HHHHh-cCHHH--HHHHhhcCHHHHHHhcCCCHHHHHHHHHHhHHHHHHHHHhhHHHHHHhhCCCccH
Q 016931 97 QQHIR-NDANL--MTQLFQSDPELAQVLLGNDLNKLQDLLRERSRQRSELRRRQEEEMALLYADPFDV 161 (380)
Q Consensus 97 ~q~~l-~nP~~--l~qL~~~nP~La~ai~~~d~~~~~~~l~~~~~q~~~~~~~~~~el~~l~~dP~~~ 161 (380)
...++ ++|.+ |++++++||++-..+. +-|...+|+..++..+.++++-.|+++|...
T Consensus 25 l~~L~~~~Pqf~qlRq~vqqNPqlL~~lL--------qqig~~NPqL~qlI~qNqe~Fl~mLnep~~~ 84 (171)
T 2qsf_X 25 PGSIGLTVEDLLSLRQVVSGNPEALAPLL--------ENISARYPQLREHIMANPEVFVSMLLEAVGD 84 (171)
T ss_dssp ---CCCCHHHHHHHHHHHHTCGGGHHHHH--------HHHHHHCTTHHHHHHHCHHHHHHHHHHCCC-
T ss_pred HHHHHhcCHHHHHHHHHHHHCHHHHHHHH--------HHHHhhCHHHHHHHHHCHHHHHHHHhCcccc
Confidence 34556 77774 7777888888766653 2223333666666555666777777777553
No 217
>2kl0_A Putative thiamin biosynthesis THis; structural genomics, PSI-2, protein structure initiative, N structural genomics consortium, NESG; NMR {Rhodopseudomonas palustris} PDB: 2lek_A
Probab=79.74 E-value=2 Score=31.80 Aligned_cols=61 Identities=13% Similarity=0.085 Sum_probs=44.5
Q ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCCCcCeEEecCCeecCCcccchhcCCCCCcEEEEeec
Q 016931 1 MRITVMTADEQIISLDVDPHETVENVKALLEVETQVPLQQQQLLYNGREMNNAEKLSALGVKDEDLVMMVSN 72 (380)
Q Consensus 1 M~ItVk~~~g~~~~i~V~~~~TV~~LK~~I~~~~gip~~~q~Li~~Gk~L~D~~tL~~~gI~dg~~I~l~~~ 72 (380)
|+|+|. |+.+ ++ ...||.+|.+. .++++...-+..||..+.. ....+.-+++||.|-++.-
T Consensus 1 M~I~vN---G~~~--e~-~~~Tl~~LL~~----l~~~~~~vAV~vNg~iVpr-~~~~~~~L~dGD~veIv~~ 61 (73)
T 2kl0_A 1 MLVTIN---GEQR--EV-QSASVAALMTE----LDCTGGHFAVALNYDVVPR-GKWDETPVTAGDEIEILTP 61 (73)
T ss_dssp CCEEET---TEEE--CC-CCSBHHHHHHH----TTCCSSSCEEEESSSEECH-HHHTTCBCCTTCEEEEECC
T ss_pred CEEEEC---CEEE--Ec-CCCcHHHHHHH----cCCCCCcEEEEECCEECCh-HHcCcccCCCCCEEEEEcc
Confidence 555553 5644 44 56899998764 6888888888899988753 3455667899999999853
No 218
>2k5p_A THis protein, thiamine-biosynthesis protein; NESG, GMR137, structural genomics, PSI-2, protein structure initiative; NMR {Geobacter metallireducens gs-15} PDB: 3cwi_A
Probab=79.43 E-value=1.9 Score=32.42 Aligned_cols=61 Identities=26% Similarity=0.284 Sum_probs=44.8
Q ss_pred CEEEEEeCCCCEEEEEeC--CCCCHHHHHHHHHHHhCCC-CcCeEEecCCeecCCcccchhcCCCCCcEEEEee
Q 016931 1 MRITVMTADEQIISLDVD--PHETVENVKALLEVETQVP-LQQQQLLYNGREMNNAEKLSALGVKDEDLVMMVS 71 (380)
Q Consensus 1 M~ItVk~~~g~~~~i~V~--~~~TV~~LK~~I~~~~gip-~~~q~Li~~Gk~L~D~~tL~~~gI~dg~~I~l~~ 71 (380)
|+|+|. |+. .+++ ...||.+|.+. .+++ +...-+..||..+.. ....+.-+++||.|-++.
T Consensus 1 M~I~vN---Ge~--~e~~~~~~~Tl~~LL~~----l~~~~~~~vAVavNg~iVpr-~~~~~~~L~dGD~IEIv~ 64 (78)
T 2k5p_A 1 MNLTVN---GKP--STVDGAESLNVTELLSA----LKVAQAEYVTVELNGEVLER-EAFDATTVKDGDAVEFLY 64 (78)
T ss_dssp CEEEET---TEE--EECSSCSCEEHHHHHHH----HTCSCTTTCCEEETTEECCT-THHHHCEECSSBCEEECC
T ss_pred CEEEEC---CEE--EEcCCCCCCcHHHHHHH----cCCCCCCcEEEEECCEECCh-HHcCcccCCCCCEEEEEe
Confidence 666654 564 4555 66899998875 5777 777778899988754 345666789999999985
No 219
>3po0_A Small archaeal modifier protein 1; ubiquitin-like protein, protein binding; 1.55A {Haloferax volcanii} PDB: 2l83_A
Probab=79.10 E-value=14 Score=27.75 Aligned_cols=56 Identities=18% Similarity=0.188 Sum_probs=40.1
Q ss_pred CEEEEEeCCCCCHHHHHHHHHHHhC-CC-----C-----cCeEEecCCeecCCcccchhcCCCCCcEEEEee
Q 016931 11 QIISLDVDPHETVENVKALLEVETQ-VP-----L-----QQQQLLYNGREMNNAEKLSALGVKDEDLVMMVS 71 (380)
Q Consensus 11 ~~~~i~V~~~~TV~~LK~~I~~~~g-ip-----~-----~~q~Li~~Gk~L~D~~tL~~~gI~dg~~I~l~~ 71 (380)
....++++...||.+|.+.+..+.. +. . ....+..||+.... +.-+++||.|.+..
T Consensus 18 ~~~~~~~~~~~Tv~~ll~~L~~~~p~~~~~~l~~~g~l~~~~~v~VN~~~v~~-----~~~l~~gDeV~i~P 84 (89)
T 3po0_A 18 RTVRVDVDGDATVGDALDALVGAHPALESRVFGDDGELYDHINVLRNGEAAAL-----GEATAAGDELALFP 84 (89)
T ss_dssp SEEEEECCTTCBHHHHHHHHHHHCGGGHHHHBCTTSCBCTTSEEEETTEECCT-----TSBCCTTCEEEEEC
T ss_pred CeEEEECCCCCcHHHHHHHHHHHCcHHHHHHhccCCcccccEEEEECCEECCC-----CcccCCCCEEEEEC
Confidence 5677888888999999999988762 10 0 12455568877654 45688999999874
No 220
>1y8x_B Ubiquitin-activating enzyme E1C; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: c.111.1.2 PDB: 3fn1_A
Probab=78.95 E-value=2.9 Score=32.98 Aligned_cols=62 Identities=13% Similarity=0.295 Sum_probs=44.1
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHhCCCCc-----------CeEEecCC-eecCC------cccchhcCCCCCcEEEEeecC
Q 016931 12 IISLDVDPHETVENVKALLEVETQVPLQ-----------QQQLLYNG-REMNN------AEKLSALGVKDEDLVMMVSNA 73 (380)
Q Consensus 12 ~~~i~V~~~~TV~~LK~~I~~~~gip~~-----------~q~Li~~G-k~L~D------~~tL~~~gI~dg~~I~l~~~~ 73 (380)
...++|+++.|+.+|-+.+...-.+... ...|+..+ ..|.. +++|.++|+.+|+.|+|....
T Consensus 6 ~~~l~v~~~~TL~~lid~L~~~p~~qlk~PSltt~~~~~~k~LYmq~pp~Lee~Tr~NL~k~l~eLgl~~g~ei~VtD~~ 85 (98)
T 1y8x_B 6 PQNIQFSPSAKLQEVLDYLTNSASLQMKSPAITATLEGKNRTLYMQSVTSIEERTRPNLSKTLKELGLVDGQELAVADVT 85 (98)
T ss_dssp CCCEECCTTCBHHHHHHHHHHCTTCCCSSCEEEEEETTEEEEEECSSCHHHHHHHHHHHHSBSGGGTCCTTCEEEEECTT
T ss_pred cEEEEECCchhHHHHHHHHHhChHhhccCCeeeeecCCCCCeEEEeCcHHHHHHhHhhhhCCHHHhCCCCCCEEEEECCC
Confidence 4568999999999999999985332221 34454443 23432 478999999999999997643
No 221
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=78.77 E-value=0.8 Score=44.76 Aligned_cols=37 Identities=24% Similarity=0.416 Sum_probs=15.4
Q ss_pred HHHHHhcCHHHHHHH----hhcCHHHHHHhcCCCHHHHHHHH
Q 016931 96 FQQHIRNDANLMTQL----FQSDPELAQVLLGNDLNKLQDLL 133 (380)
Q Consensus 96 ~~q~~l~nP~~l~qL----~~~nP~La~ai~~~d~~~~~~~l 133 (380)
||+.+.+||+++..| -+.||+|.+.|. .|++.|.+++
T Consensus 249 lR~~vq~nP~~l~~~lq~l~~~nP~l~~~I~-~n~~~Fl~~l 289 (368)
T 1oqy_A 249 MRQVIQQNPALLPALLQQLGQENPQLLQQIS-RHQEQFIQML 289 (368)
T ss_dssp HHHSTTTCTTHHHHHHTTTTTTCHHHHHHHH-HHHHHHHHHH
T ss_pred HHHHHHhChHHHHHHHHHHHhhCHHHHHHHH-HCHHHHHHHH
Confidence 444444554433222 224444444443 3444444443
No 222
>1t6e_X Xylanase inhibitor; two beta-barrel domain structure, hydrolase inhibitor; 1.70A {Triticum aestivum} SCOP: b.50.1.2 PDB: 1t6g_A 2b42_A 3hd8_A
Probab=78.10 E-value=3.3 Score=39.96 Aligned_cols=27 Identities=11% Similarity=0.185 Sum_probs=24.9
Q ss_pred ceeeeHHHHhhcCeEEEcCCCEEEEcC
Q 016931 280 EFLFGLDMLRKHQCIIDLKENVLRVGG 306 (380)
Q Consensus 280 d~iLG~D~L~~~~~~ID~~~~~l~i~~ 306 (380)
-.|||--||+.+-.+.|+.+++|-|..
T Consensus 345 ~~ILGd~fl~~~yvvfD~~~~riGfA~ 371 (381)
T 1t6e_X 345 AVILGGAQMEDFVLDFDMEKKRLGFSR 371 (381)
T ss_dssp SEEECHHHHTTEEEEEETTTTEEEEEE
T ss_pred eEEEChHHhCCcEEEEECCCCEEEEec
Confidence 479999999999999999999999964
No 223
>3dwg_C 9.5 kDa culture filtrate antigen CFP10A; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} PDB: 3dwm_A
Probab=77.30 E-value=6 Score=30.12 Aligned_cols=69 Identities=20% Similarity=0.203 Sum_probs=43.1
Q ss_pred CEEEEEeC------CCCEEEEEeCCCCCHHHHHHHHHHHhCC------C---C----cCeEEecCCeecCCcccchhcCC
Q 016931 1 MRITVMTA------DEQIISLDVDPHETVENVKALLEVETQV------P---L----QQQQLLYNGREMNNAEKLSALGV 61 (380)
Q Consensus 1 M~ItVk~~------~g~~~~i~V~~~~TV~~LK~~I~~~~gi------p---~----~~q~Li~~Gk~L~D~~tL~~~gI 61 (380)
|+|+|+.. .|....+++ ...||.+|.+.+..++.- . . ....+..||+...+..-+ +.-+
T Consensus 1 M~v~V~~fa~lr~~~g~~~~~~~-~~~Tv~~ll~~L~~~~p~l~~~l~~~~~~g~~~~~~~v~VN~~~v~~~~~~-~~~L 78 (93)
T 3dwg_C 1 MNVTVSIPTILRPHTGGQKSVSA-SGDTLGAVISDLEANYSGISERLMDPSSPGKLHRFVNIYVNDEDVRFSGGL-ATAI 78 (93)
T ss_dssp -CEEEECCGGGGGGTTTCSEEEE-CCSBHHHHHHHHHHHSTTHHHHHBCSSSTTSBCTTEEEEETTEEGGGTTGG-GCBC
T ss_pred CEEEEEEeHHHHHHhCCCeEEec-CCCCHHHHHHHHHHHChhHHHHHhccccCCcccCCEEEEECCEEccCcCCC-CcCC
Confidence 78888853 233334665 457999999999887620 0 0 124455677766542222 3458
Q ss_pred CCCcEEEEee
Q 016931 62 KDEDLVMMVS 71 (380)
Q Consensus 62 ~dg~~I~l~~ 71 (380)
++||.|.+..
T Consensus 79 ~~gDeV~i~P 88 (93)
T 3dwg_C 79 ADGDSVTILP 88 (93)
T ss_dssp CTTCEEEEEE
T ss_pred CCCCEEEEEC
Confidence 9999999874
No 224
>3hm6_X Plexin-B1; structural genomics consortium, SGC, membrane, transmembrane receptor, cell membrane, glycoprotein, phosphoprotein; 2.40A {Homo sapiens} PDB: 3sua_D* 3su8_X*
Probab=76.76 E-value=6.6 Score=40.67 Aligned_cols=62 Identities=21% Similarity=0.288 Sum_probs=44.8
Q ss_pred CEEEEEeCCCCCHHHHHHHHHHHh--CCCC------cCeEEec----CCe-ecCCc-------------ccchhcCCCCC
Q 016931 11 QIISLDVDPHETVENVKALLEVET--QVPL------QQQQLLY----NGR-EMNNA-------------EKLSALGVKDE 64 (380)
Q Consensus 11 ~~~~i~V~~~~TV~~LK~~I~~~~--gip~------~~q~Li~----~Gk-~L~D~-------------~tL~~~gI~dg 64 (380)
..+.+.|-..+||.++|++|-... |+|- ++..|-+ .|+ +|.|. .||+.|+|+||
T Consensus 274 ~~i~VkVLdCDTItQVKeKiLDavYk~~pyS~rP~~~~~dLEwr~g~~g~~iL~D~D~ts~~~~~wkrLNTL~HY~V~dg 353 (644)
T 3hm6_X 274 QGVPVKVLDCDTISQAKEKMLDQLYKGVPLTQRPDPRTLDVEWRSGVAGHLILSDEDVTSEVQGLWRRLNTLQHYKVPDG 353 (644)
T ss_dssp CCEEEEEETTSBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEECSSSCEEEECSSSTTCCEETTEEECCBTTTTTCCTT
T ss_pred CceeeEeeccCcHHHHHHHHHHHHHcCCCcccCCCCCCcceEEeeCCCCceeecccCccceecCcceeecchhhcCCCCC
Confidence 347788888999999999988653 4443 4555554 233 35542 38999999999
Q ss_pred cEEEEeec
Q 016931 65 DLVMMVSN 72 (380)
Q Consensus 65 ~~I~l~~~ 72 (380)
.+|-++.+
T Consensus 354 a~v~L~p~ 361 (644)
T 3hm6_X 354 ATVALVPC 361 (644)
T ss_dssp CEEEEEEC
T ss_pred cEEEEEec
Confidence 99999864
No 225
>2dbs_A Hypothetical protein TTHC002; extremely thermophili bacteria, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} SCOP: d.374.1.1
Probab=76.10 E-value=4.4 Score=30.22 Aligned_cols=43 Identities=26% Similarity=0.441 Sum_probs=33.1
Q ss_pred hhCCCccHHHHHHHHHHHHhhcHHHHHHHHHhc-CCccccccceeEEeeeecCeeEEEEE
Q 016931 154 LYADPFDVEAQKKIEAAIRQKGIDENWAAALEH-NPEAFARVVMLYVDMEVNGIPLKAFV 212 (380)
Q Consensus 154 l~~dP~~~E~Q~~I~E~Irq~~i~en~~~A~E~-~Pe~f~~~~~lyv~v~Ing~~v~alV 212 (380)
..-+|++||..++ -+..|+|. +|||+-.++-|| ..|.+++.++
T Consensus 35 V~L~~dePEvaa~------------AL~~A~eapn~EGwP~VYALF----lqGr~lRLll 78 (90)
T 2dbs_A 35 VLLPLDEPEVAAQ------------ALAWAMEAPNPEGWPSVYALF----LQGRPIRLLL 78 (90)
T ss_dssp EEEETTCHHHHHH------------HHHHHHSCCCSSSSCEEEEEE----ETTEEEEEEE
T ss_pred EecCCCCHHHHHH------------HHHHHHhCCCCCCChhHHHHH----hCCceeEEee
Confidence 3457788998877 78889998 999987666665 4677887765
No 226
>3onh_A Ubiquitin-activating enzyme E1-like; ligase, SUMO conjugation, UBC9; 1.60A {Saccharomyces cerevisiae} PDB: 3ong_A
Probab=75.71 E-value=5.4 Score=32.82 Aligned_cols=51 Identities=16% Similarity=0.290 Sum_probs=38.8
Q ss_pred CCCHHHHHHHHHHHhCCCCcCeEEec--CCeecC-----C--cccchhcCCCCCcEEEEee
Q 016931 20 HETVENVKALLEVETQVPLQQQQLLY--NGREMN-----N--AEKLSALGVKDEDLVMMVS 71 (380)
Q Consensus 20 ~~TV~~LK~~I~~~~gip~~~q~Li~--~Gk~L~-----D--~~tL~~~gI~dg~~I~l~~ 71 (380)
..|+.+|-..+..++|... ...+.- +.+.|- | +++|+++||++|++|.+..
T Consensus 19 ~~TL~dLV~~l~~~~gy~~-eiSV~~~~~~rLLyD~DfDDnl~k~L~dLgv~~gsfLtv~D 78 (127)
T 3onh_A 19 KMKLSDFVVLIREKYSYPQ-DISLLDASNQRLLFDYDFEDLNDRTLSEINLGNGSIILFSD 78 (127)
T ss_dssp HCBHHHHHHHHHHHHTCCS-SEEEEETTTTEEEEETTBCTTTTSBTTTTTCCTTCEEEEEE
T ss_pred ccCHHHHHHHHHHhcCCCC-cEEEEecCCCCeEeCCCccccccCcHHHcCcCCCcEEEEEc
Confidence 4799999988999998764 555542 234442 3 4899999999999999985
No 227
>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*
Probab=75.32 E-value=4.2 Score=42.86 Aligned_cols=64 Identities=27% Similarity=0.500 Sum_probs=48.1
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHhCCCCcCeEEecC-CeecCCcccchhcCC---------CCCcEEEEeec
Q 016931 9 DEQIISLDVDPHETVENVKALLEVETQVPLQQQQLLYN-GREMNNAEKLSALGV---------KDEDLVMMVSN 72 (380)
Q Consensus 9 ~g~~~~i~V~~~~TV~~LK~~I~~~~gip~~~q~Li~~-Gk~L~D~~tL~~~gI---------~dg~~I~l~~~ 72 (380)
..+...+.+.++.|+.+|+..|+..+|++++.|.+++. |..+........|-+ .+.++|++..+
T Consensus 320 ~~~~~~~~i~~~~tl~~l~~~i~~~T~i~~~~q~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (676)
T 3qa8_A 320 SGRVHTYPVTENENLQNLKSWLQQDTGIPEEEQELLQASGLALNSAQPLTQYVIDCTVIDGRQGEGDLIFLFDN 393 (676)
T ss_dssp SSCCCEEECCTTCCHHHHHHHHHTTSCCCSTTCEEESSSSCCCCTTSCGGGSCCCSCC-------CCCEEECSS
T ss_pred ccccceeecCCCccHHHHHHHHHHHhCCCHHHHHHHhccCCCCCCCcchhhheeccccccccCCCCceEEEEec
Confidence 35566789999999999999999999999999999985 445555556665422 35567777765
No 228
>2kmc_A Fermitin family homolog 1; kindlin, cytoskeleton, integrin, N-terminal, talin, cell adhesion, cell junction, cell membrane, cell projection; NMR {Mus musculus}
Probab=74.03 E-value=22 Score=27.86 Aligned_cols=71 Identities=15% Similarity=0.179 Sum_probs=54.9
Q ss_pred EEEEEeCCC---CEEEEEeCCCCCHHHHHHHHHHHhCCCC--cCeEEecCC---eecCCcccchhcCCCCCcEEEEeec
Q 016931 2 RITVMTADE---QIISLDVDPHETVENVKALLEVETQVPL--QQQQLLYNG---REMNNAEKLSALGVKDEDLVMMVSN 72 (380)
Q Consensus 2 ~ItVk~~~g---~~~~i~V~~~~TV~~LK~~I~~~~gip~--~~q~Li~~G---k~L~D~~tL~~~gI~dg~~I~l~~~ 72 (380)
+|+|...+. ..++++|..+.-|.-+.-+|-++.+++. ..--|.+-- ..|+-..||..|||+.+..++....
T Consensus 21 ~V~V~d~~~~~~~~~~lrV~GdlHIGGvmlklVEki~i~~dWSDhaLWW~~k~~WLlkt~~tLDkygiqADa~L~ftp~ 99 (102)
T 2kmc_A 21 VVRVDHANGEQQTEITLRVSGDLHIGGVMLKLVEQMNIAQDWSDYALWWEQKRCWLLKTHWTLDKCGVQADANLLFTPQ 99 (102)
T ss_dssp EEEEECTTSSCEEEEEEEECSCCBHHHHHHHHHHHHCCSSCCSSEEEEETTTTEEECCTTSBHHHHTCCTTSCEEEEEC
T ss_pred EEEEecCCcccCccEEEEEeeccccchhhhhhhhhcccccchHHhhhhhhhhchhhhhhhhhhhhhceeeeeeeeccCC
Confidence 567777553 4588999999999999999888877665 456666533 3467788999999999999988753
No 229
>2lnm_A Protein TIC 40, chloroplastic; translocon, import, TIC40-NP, protein transport; NMR {Arabidopsis thaliana}
Probab=73.81 E-value=5.2 Score=28.52 Aligned_cols=26 Identities=12% Similarity=0.323 Sum_probs=13.3
Q ss_pred HHHHHHHhcCHHHHHHHhhcCHHHHHHh
Q 016931 94 AAFQQHIRNDANLMTQLFQSDPELAQVL 121 (380)
Q Consensus 94 ~~~~q~~l~nP~~l~qL~~~nP~La~ai 121 (380)
+++.+.+++||+++..+ +||++.+++
T Consensus 2 ~e~~~kl~~dPe~~~~m--~dP~~~~~l 27 (62)
T 2lnm_A 2 EEVISKIMENPDVAMAF--QNPRVQAAL 27 (62)
T ss_dssp HHHHHHHTTSHHHHHHT--TSHHHHHHH
T ss_pred HHHHHHHHcChHHHHHc--CCHHHHHHH
Confidence 34555555666555544 255554444
No 230
>1wgk_A Riken cDNA 2900073H19 protein; THis domain, ubiqutin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.3.3 PDB: 1xo3_A
Probab=73.37 E-value=5.4 Score=32.12 Aligned_cols=69 Identities=12% Similarity=0.189 Sum_probs=43.7
Q ss_pred CEEEEEeCC------C--CEEEEEeCC---CCCHHHHHHHHHHHhCCCCcCeEEec-CCe------ecCCcc---cc--h
Q 016931 1 MRITVMTAD------E--QIISLDVDP---HETVENVKALLEVETQVPLQQQQLLY-NGR------EMNNAE---KL--S 57 (380)
Q Consensus 1 M~ItVk~~~------g--~~~~i~V~~---~~TV~~LK~~I~~~~gip~~~q~Li~-~Gk------~L~D~~---tL--~ 57 (380)
|+|+|+... | +.+.++++. ..||.+|...+...+ |....+|+. +|+ ++-|+. .| .
T Consensus 12 M~v~V~~~~~Lr~~~g~~~~~~vel~~~~~~~TV~~Ll~~L~~~~--~~~~~~lf~~~g~lr~~i~VlVN~~di~~l~gl 89 (114)
T 1wgk_A 12 LCVKVEFGGGAELLFDGVKKHQVALPGQEEPWDIRNLLVWIKKNL--LKERPELFIQGDSVRPGILVLINDADWELLGEL 89 (114)
T ss_dssp EEEEEEECTTTGGGTTTCSEEEEEECCCSSCCBHHHHHHHHTTTT--CCSCHHHHCCSSSCCSSEEEEESSSBHHHHCTT
T ss_pred cEEEEEEchHHHHHhCCceEEEEEeCCCCCCCCHHHHHHHHHHHc--cchhHhhCccCCcccCCeEEEECCeeeeccCCc
Confidence 678888642 3 356788883 369999999998886 222333432 232 232333 22 3
Q ss_pred hcCCCCCcEEEEee
Q 016931 58 ALGVKDEDLVMMVS 71 (380)
Q Consensus 58 ~~gI~dg~~I~l~~ 71 (380)
++-+++||.|.++.
T Consensus 90 dt~L~dGDeV~iip 103 (114)
T 1wgk_A 90 DYQLQDQDSILFIS 103 (114)
T ss_dssp TCBCCSSEEEEEEE
T ss_pred CcCCCCCCEEEEeC
Confidence 46799999998875
No 231
>1ip9_A BEM1 protein; ubiquitin alpha/beta roll, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1ipg_A 2kfk_A
Probab=72.88 E-value=6.5 Score=30.06 Aligned_cols=36 Identities=11% Similarity=0.228 Sum_probs=30.0
Q ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCC
Q 016931 1 MRITVMTADEQIISLDVDPHETVENVKALLEVETQVP 37 (380)
Q Consensus 1 M~ItVk~~~g~~~~i~V~~~~TV~~LK~~I~~~~gip 37 (380)
|+|++-. ++..|.+.|+.+.+..+|+.+|..+..+.
T Consensus 13 ~KVK~yy-~DDIiAIrvP~di~~~~L~dKi~~RLk~~ 48 (85)
T 1ip9_A 13 TKIKFYY-KDDIFALMLKGDTTYKELRSKIAPRIDTD 48 (85)
T ss_dssp EEEEECB-TTCCEEEEECSCCCHHHHHHHHHHHHTSS
T ss_pred eEEEEEe-cCcEEEEECCCCCCHHHHHHHHHHHhccc
Confidence 3455555 45789999999999999999999999883
No 232
>3vla_A EDGP; extracellular, inhibitor, plant protein; HET: NAG; 0.95A {Daucus carota} PDB: 3vlb_A
Probab=72.65 E-value=8.7 Score=37.65 Aligned_cols=27 Identities=19% Similarity=0.300 Sum_probs=24.7
Q ss_pred ceeeeHHHHhhcCeEEEcCCCEEEEcC
Q 016931 280 EFLFGLDMLRKHQCIIDLKENVLRVGG 306 (380)
Q Consensus 280 d~iLG~D~L~~~~~~ID~~~~~l~i~~ 306 (380)
-.|||--||+.+-.+.|+.+++|-|..
T Consensus 371 ~~IlGd~fl~~~~vvfD~~~~riGfa~ 397 (413)
T 3vla_A 371 SIVIGGHQLEDNLVQFDLATSRVGFSG 397 (413)
T ss_dssp SEEECHHHHTTEEEEEETTTTEEEEEE
T ss_pred ceeEehhhhcCeEEEEECCCCEEEEEE
Confidence 369999999999999999999999964
No 233
>3vf3_A Beta-secretase 1; structure-based drug design, hydrolase-hydrolase inhibitor C; HET: 0GS; 1.48A {Homo sapiens} PDB: 2f3e_A* 2f3f_A* 1ym2_A* 3dv1_A* 3dv5_A* 3k5c_A* 3k5f_A* 3k5g_A* 3pi5_A* 3qbh_A* 3duy_A* 3veu_A* 3vg1_A* 4d83_A* 4d88_A* 4d89_A* 4d8c_A* 3msk_A* 3k5d_A* 1ym4_A* ...
Probab=71.65 E-value=3 Score=40.51 Aligned_cols=28 Identities=7% Similarity=0.116 Sum_probs=25.5
Q ss_pred CceeeeHHHHhhcCeEEEcCCCEEEEcC
Q 016931 279 MEFLFGLDMLRKHQCIIDLKENVLRVGG 306 (380)
Q Consensus 279 ~d~iLG~D~L~~~~~~ID~~~~~l~i~~ 306 (380)
...|||..||+.+-.+.|+.+++|-|..
T Consensus 345 ~~~ILG~~fl~~~yvvfD~~~~rIGfA~ 372 (402)
T 3vf3_A 345 TGTVMGAVIMEGFYVVFDRARKRIGFAV 372 (402)
T ss_dssp SCEEECHHHHTTEEEEEEGGGTEEEEEE
T ss_pred CcEEEChHHhCCeEEEEECCCCEEEEEe
Confidence 4589999999999999999999999964
No 234
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=70.87 E-value=16 Score=35.10 Aligned_cols=71 Identities=13% Similarity=0.233 Sum_probs=55.6
Q ss_pred EEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCCC-cCeEEecCC---------eecCCcccchhcCCCCCcEEEEee
Q 016931 2 RITVMTADEQIISLDVDPHETVENVKALLEVETQVPL-QQQQLLYNG---------REMNNAEKLSALGVKDEDLVMMVS 71 (380)
Q Consensus 2 ~ItVk~~~g~~~~i~V~~~~TV~~LK~~I~~~~gip~-~~q~Li~~G---------k~L~D~~tL~~~gI~dg~~I~l~~ 71 (380)
.+.|..++|....+.|++.+|+.++-..|..+.|+.. +..-|.+.. .-|+.++++.+.++....++++.+
T Consensus 87 ~~~V~l~dg~~~~~~vd~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~~~~~~wL~~~k~l~~q~~~~~~~l~frv 166 (371)
T 3ivf_A 87 PLKIRMLDGTVKTIMVDDSKTVTDMLMTICARIGITNHDEYSLVRELMEEKKDDELNWLDHGRTLREQGVEEHETLLLRR 166 (371)
T ss_dssp EEEEECTTSCEEEEEEETTSBHHHHHHHHHHHTTCSCGGGEEEECCC----------CCCTTSBTGGGTCCTTCEEEEEE
T ss_pred EEEEECcCCCEEEEEECCCCCHHHHHHHHHHHcCCCCccccEEEEEecccccchHHHHHhcCchhHhhCCCCCceEEEEE
Confidence 4778899999999999999999999999999999765 445565532 235567788888877777887765
Q ss_pred c
Q 016931 72 N 72 (380)
Q Consensus 72 ~ 72 (380)
+
T Consensus 167 K 167 (371)
T 3ivf_A 167 K 167 (371)
T ss_dssp C
T ss_pred E
Confidence 5
No 235
>2kmm_A Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohydrolase; methods development, TGS domain, predominantly beta-sheet structure; NMR {Porphyromonas gingivalis}
Probab=69.22 E-value=9.7 Score=27.26 Aligned_cols=63 Identities=16% Similarity=0.094 Sum_probs=42.3
Q ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCCCcCeEEecCCeecCCcccchhcCCCCCcEEEEeec
Q 016931 1 MRITVMTADEQIISLDVDPHETVENVKALLEVETQVPLQQQQLLYNGREMNNAEKLSALGVKDEDLVMMVSN 72 (380)
Q Consensus 1 M~ItVk~~~g~~~~i~V~~~~TV~~LK~~I~~~~gip~~~q~Li~~Gk~L~D~~tL~~~gI~dg~~I~l~~~ 72 (380)
|+++|..++|+. .+++...|+.+|-..+....+ ....-...||+...-+ +-+++|+.|-++..
T Consensus 1 m~i~i~~p~g~~--~~~~~g~T~~dla~~i~~~l~--~~~vaa~vNg~lvdl~-----~~L~~~~~Veivt~ 63 (73)
T 2kmm_A 1 MEVMVFTPKGEI--KRLPQGATALDFAYSLHSDLG--DHCIGAKVNHKLVPLS-----YVLNSGDQVEVLSS 63 (73)
T ss_dssp CCEEEECTTCCE--EEECTTCBHHHHHHHHCSHHH--HTEEEEEETTEECCTT-----CBCCSSSBEEEEEC
T ss_pred CeEEEEcCCCCE--EEcCCCCcHHHHHHHHhhccc--cceEEEEECCEEeCCC-----cCcCCCCEEEEEEC
Confidence 889999888886 566778999999887743321 1122234688766543 45667888888754
No 236
>2qjl_A URM1, ubiquitin-related modifier 1; ubiquitin-like protein, signaling protein; 1.44A {Saccharomyces cerevisiae} PDB: 2pko_A 2ax5_A
Probab=68.89 E-value=28 Score=26.77 Aligned_cols=71 Identities=11% Similarity=0.113 Sum_probs=41.0
Q ss_pred CEEEEEeC------C--CCEEEEEeC--CCCCHHHHHHHHHHHhCCCCcCeE-EecCCe------ecCCcc---cc--hh
Q 016931 1 MRITVMTA------D--EQIISLDVD--PHETVENVKALLEVETQVPLQQQQ-LLYNGR------EMNNAE---KL--SA 58 (380)
Q Consensus 1 M~ItVk~~------~--g~~~~i~V~--~~~TV~~LK~~I~~~~gip~~~q~-Li~~Gk------~L~D~~---tL--~~ 58 (380)
|+|+|+.. . .+...+++. ...||.+|.+.+..+..-...... +.-+|+ .+-|+. .+ .+
T Consensus 2 M~i~V~~fa~lre~~~g~~~~~~~l~~~~~~Tv~~L~~~L~~~~~~~~~~l~~~~~~~~lr~~~~v~VN~~~~~~~~~~d 81 (99)
T 2qjl_A 2 VNVKVEFLGGLDAIFGKQRVHKIKMDKEDPVTVGDLIDHIVSTMINNPNDVSIFIEDDSIRPGIITLINDTDWELEGEKD 81 (99)
T ss_dssp EEEEEEEETTGGGGTTTCCEEEEEECSCSCCBHHHHHHHHHHHTCSSGGGHHHHEETTEECTTEEEEETTEEGGGGTGGG
T ss_pred cEEEEEEchHHHHHhCCCcEEEEecCCCCCCcHHHHHHHHHHHCchhhHHHhhhccCCccccCeEEEECCEEccccCCCC
Confidence 57888742 2 245667776 678999999999988632111110 011121 122222 22 34
Q ss_pred cCCCCCcEEEEee
Q 016931 59 LGVKDEDLVMMVS 71 (380)
Q Consensus 59 ~gI~dg~~I~l~~ 71 (380)
+-+++||.|.+..
T Consensus 82 ~~L~dgDeVa~~P 94 (99)
T 2qjl_A 82 YILEDGDIISFTS 94 (99)
T ss_dssp CBCCTTCEEEEEE
T ss_pred cCcCCCCEEEEEC
Confidence 5689999998874
No 237
>3ig3_A Plxna3 protein; plexin intracellular GAP RBD inactive, membrane, transmembra membrane protein, signaling protein; 1.99A {Mus musculus} PDB: 3ryt_A*
Probab=67.99 E-value=16 Score=37.75 Aligned_cols=63 Identities=19% Similarity=0.313 Sum_probs=45.4
Q ss_pred CEEEEEeCCCCCHHHHHHHHHHHh--CCC------CcCeEEec-C---Ce-ecCC---------c----ccchhcCCCCC
Q 016931 11 QIISLDVDPHETVENVKALLEVET--QVP------LQQQQLLY-N---GR-EMNN---------A----EKLSALGVKDE 64 (380)
Q Consensus 11 ~~~~i~V~~~~TV~~LK~~I~~~~--gip------~~~q~Li~-~---Gk-~L~D---------~----~tL~~~gI~dg 64 (380)
..+.+.|-..+||.++|++|-... |+| +++..|-| . |+ +|.| + .||++|+|+||
T Consensus 247 ~~i~vkVLdCDTItQVKeKiLdavYk~~pyS~rP~~~~~dLEwr~g~~g~~iL~D~D~ts~~~~~wkrLNTL~HY~V~Dg 326 (627)
T 3ig3_A 247 AQVPVKVLNCDSITQAKDKLLDTVYKGIPYSQRPKAEDMDLEWRQGRMARIILQDEDITTKIECDWKRVNSLAHYQVTDG 326 (627)
T ss_dssp CEEEEEEETTCBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEESCSSCEEEECSSSTTCCEETTEEECCBTTTTTCCTT
T ss_pred CceeeEeeccCcHHHHHHHHHHHHHcCCCcccCCCCCccceeEeeCCCCceeeccCCccccccCceeEecchhhcCCCCC
Confidence 557888889999999999988764 343 35556654 2 33 3544 1 37999999999
Q ss_pred cEEEEeecC
Q 016931 65 DLVMMVSNA 73 (380)
Q Consensus 65 ~~I~l~~~~ 73 (380)
.+|-++.+.
T Consensus 327 a~v~L~p~~ 335 (627)
T 3ig3_A 327 SLVALVPKQ 335 (627)
T ss_dssp CEEEEEEC-
T ss_pred ceEEEEecc
Confidence 999998653
No 238
>2k9x_A Tburm1, uncharacterized protein; unknown function; NMR {Trypanosoma brucei}
Probab=67.55 E-value=2.7 Score=33.76 Aligned_cols=69 Identities=23% Similarity=0.235 Sum_probs=42.3
Q ss_pred CEEEEEeCC------CCEEEEEeCC----CCCHHHHHHHHHHHhCCCCcCeEEec-CC--e------ecCCcccc-----
Q 016931 1 MRITVMTAD------EQIISLDVDP----HETVENVKALLEVETQVPLQQQQLLY-NG--R------EMNNAEKL----- 56 (380)
Q Consensus 1 M~ItVk~~~------g~~~~i~V~~----~~TV~~LK~~I~~~~gip~~~q~Li~-~G--k------~L~D~~tL----- 56 (380)
|+|+|+... |+...++++. ..||.+|-..+...+ +..+-.|+- +| . +|-|+...
T Consensus 5 m~v~V~f~g~l~~l~g~~~~v~l~~~~g~~~TV~dLl~~L~~~~--~~~r~~lf~~~g~~~lrpgIlVLVNg~d~e~l~g 82 (110)
T 2k9x_A 5 NHITVQFAGGCELLFAKQTSLQLDGVVPTGTNLNGLVQLLKTNY--VKERPDLLVDQTGQTLRPGILVLVNSCDAEVVGG 82 (110)
T ss_dssp SCCEEEEESSCGGGTTSCSEECCCCSCGGGCCHHHHHHHHTTTT--CCSCHHHHBCSSSSSBCTTEEEEESSSBHHHHTS
T ss_pred cEEEEEEEecHHHHhCCeEEEEeCCcCCCCccHHHHHHHHHHHc--cccchhhEecCCCcccCCCeEEEECCeeeeccCC
Confidence 677777542 4545677763 259999988888876 223444432 23 2 34444332
Q ss_pred hhcCCCCCcEEEEee
Q 016931 57 SALGVKDEDLVMMVS 71 (380)
Q Consensus 57 ~~~gI~dg~~I~l~~ 71 (380)
.+|-+++||.|.+..
T Consensus 83 ldt~L~dgD~V~fis 97 (110)
T 2k9x_A 83 MDYVLNDGDTVEFIS 97 (110)
T ss_dssp SCCCCCSSCEEEEEE
T ss_pred cccCCCCcCEEEEeC
Confidence 347799999988864
No 239
>2ewy_A Beta-secretase 2; BACE2, aspartic protease, hydrolase; HET: DBO; 3.10A {Homo sapiens}
Probab=66.81 E-value=3.5 Score=39.63 Aligned_cols=28 Identities=11% Similarity=0.233 Sum_probs=25.4
Q ss_pred CceeeeHHHHhhcCeEEEcCCCEEEEcC
Q 016931 279 MEFLFGLDMLRKHQCIIDLKENVLRVGG 306 (380)
Q Consensus 279 ~d~iLG~D~L~~~~~~ID~~~~~l~i~~ 306 (380)
...|||-.||+.+-.+.|+.+++|-|..
T Consensus 326 ~~~ILG~~fl~~~yvvfD~~~~rIGfA~ 353 (383)
T 2ewy_A 326 NALVIGATVMEGFYVIFDRAQKRVGFAA 353 (383)
T ss_dssp SCEEECHHHHTTEEEEEETTTTEEEEEE
T ss_pred CcEEEChHHhCCeeEEEECCCCeEEEEe
Confidence 3589999999999999999999999964
No 240
>3lpj_A Beta-secretase 1; alzheimer'S, aspartyl protease, hydrolase; HET: TLA Z75; 1.79A {Homo sapiens} PDB: 3lpi_A* 3lpk_A* 3ohf_A* 3ohh_A* 3r2f_A* 3skf_A* 3skg_A* 4fse_A* 2hiz_A* 2p83_A* 2va7_A* 2va5_A* 2va6_A*
Probab=66.61 E-value=5 Score=39.72 Aligned_cols=28 Identities=7% Similarity=0.116 Sum_probs=25.5
Q ss_pred CceeeeHHHHhhcCeEEEcCCCEEEEcC
Q 016931 279 MEFLFGLDMLRKHQCIIDLKENVLRVGG 306 (380)
Q Consensus 279 ~d~iLG~D~L~~~~~~ID~~~~~l~i~~ 306 (380)
...|||..||+.+-.+.|+.+++|-|..
T Consensus 391 ~~~ILG~~fl~~~yvvfD~~~~rIGfA~ 418 (455)
T 3lpj_A 391 TGTVMGAVIMEGFYVVFDRARKRIGFAV 418 (455)
T ss_dssp SCEEECHHHHTTEEEEEETTTTEEEEEE
T ss_pred CcEEEChHHhCCeEEEEECCCCEEEEEe
Confidence 3589999999999999999999999964
No 241
>2l52_A Methanosarcina acetivorans SAMP1 homolog; beta-grAsp fold, protein binding, E1-like, SAMP activator, ELSA, adenylation, ubiquitin; NMR {Methanosarcina acetivorans}
Probab=65.82 E-value=27 Score=26.90 Aligned_cols=67 Identities=19% Similarity=0.186 Sum_probs=41.5
Q ss_pred CEEEEEeCC------C-CEEEEEeCCCCCHHHHHHHHHHHhC-CCC-----c----Ce-------EEecCCeecCCcccc
Q 016931 1 MRITVMTAD------E-QIISLDVDPHETVENVKALLEVETQ-VPL-----Q----QQ-------QLLYNGREMNNAEKL 56 (380)
Q Consensus 1 M~ItVk~~~------g-~~~~i~V~~~~TV~~LK~~I~~~~g-ip~-----~----~q-------~Li~~Gk~L~D~~tL 56 (380)
|+|+|+... | +.+.++ ..||.+|.+.+..+.. +.. . .. .+..||+...... -
T Consensus 4 m~v~V~~fa~lr~~~g~~~~~l~---~~tv~~ll~~L~~~~p~l~~~l~~~g~l~~~v~~~~~~~~v~VNg~~v~~~~-~ 79 (99)
T 2l52_A 4 AEVKVKLFANLREAAGTPELPLS---GEKVIDVLLSLTDKYPALKYVIFEKGDEKSEILILCGSINILINGNNIRHLE-G 79 (99)
T ss_dssp CEEEEEECTHHHHHHSSSEEEEE---CSSHHHHHHHHHHHCGGGTTTSBCSCCTTSSCCCBCSSCEEEETTSCGGGTT-S
T ss_pred eEEEEEEeHHHHHHhCCCeEEEe---CCcHHHHHHHHHHHChhHHHHHhcccccccceeccccccEEEECCEEccccC-C
Confidence 688888642 3 334444 5899999999988752 111 0 12 4556777654221 1
Q ss_pred hhcCCCCCcEEEEee
Q 016931 57 SALGVKDEDLVMMVS 71 (380)
Q Consensus 57 ~~~gI~dg~~I~l~~ 71 (380)
.++-+++||.|.+..
T Consensus 80 ~~~~L~~gD~V~i~p 94 (99)
T 2l52_A 80 LETLLKDSDEIGILP 94 (99)
T ss_dssp TTSCCCTTEEEEEEC
T ss_pred CCCCCCCCCEEEEEC
Confidence 244689999999874
No 242
>1fm0_D Molybdopterin convertin factor, subunit 1; molybdenum cofactor biosynthesis, transferase; 1.45A {Escherichia coli} SCOP: d.15.3.1 PDB: 1fma_D 1jw9_D 1jwa_D* 1jwb_D* 3bii_D 1nvi_D
Probab=64.00 E-value=12 Score=27.42 Aligned_cols=54 Identities=13% Similarity=0.103 Sum_probs=37.2
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHhC-----CCCcCeEEecCCeecCCcccchhcCCCCCcEEEEee
Q 016931 12 IISLDVDPHETVENVKALLEVETQ-----VPLQQQQLLYNGREMNNAEKLSALGVKDEDLVMMVS 71 (380)
Q Consensus 12 ~~~i~V~~~~TV~~LK~~I~~~~g-----ip~~~q~Li~~Gk~L~D~~tL~~~gI~dg~~I~l~~ 71 (380)
...++ ....||.+|.+.+..+.. ++.....+..||+.... +.-+++||.|.+..
T Consensus 18 ~~~~~-~~~~tv~~ll~~L~~~~p~~~~~l~~~~~~v~vN~~~v~~-----~~~l~~gD~V~i~P 76 (81)
T 1fm0_D 18 ATEVA-ADFPTVEALRQHMAAQSDRWALALEDGKLLAAVNQTLVSF-----DHPLTDGDEVAFFP 76 (81)
T ss_dssp EEEEC-SCCSBHHHHHHHHHTTCHHHHHHHCCTTCEEEETTEECCT-----TCBCCTTCEEEEEC
T ss_pred eEEEc-CCCCCHHHHHHHHHHHChhHHHHhcCCCEEEEECCEECCC-----CCCCCCCCEEEEeC
Confidence 45555 567899999999876531 22334456678887753 44688999999874
No 243
>2cu3_A Unknown function protein; thermus thermophilus HB8, structural genomics, riken structu genomics/proteomics initiative, RSGI, NPPSFA; 1.70A {Thermus thermophilus} SCOP: d.15.3.2 PDB: 2htm_E
Probab=63.87 E-value=14 Score=26.08 Aligned_cols=55 Identities=18% Similarity=0.242 Sum_probs=39.7
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHhCCCCcCeEEecCCeecCCcccchhcCCCCCcEEEEee
Q 016931 9 DEQIISLDVDPHETVENVKALLEVETQVPLQQQQLLYNGREMNNAEKLSALGVKDEDLVMMVS 71 (380)
Q Consensus 9 ~g~~~~i~V~~~~TV~~LK~~I~~~~gip~~~q~Li~~Gk~L~D~~tL~~~gI~dg~~I~l~~ 71 (380)
+|+.+ ++ ...||.+|.+.+ ++++....+..||+.+..+ ...+.-+++||.|.++.
T Consensus 5 Ng~~~--~~-~~~tv~~ll~~l----~~~~~~v~vavN~~~v~~~-~~~~~~L~dgD~v~i~~ 59 (64)
T 2cu3_A 5 NGEPR--PL-EGKTLKEVLEEM----GVELKGVAVLLNEEAFLGL-EVPDRPLRDGDVVEVVA 59 (64)
T ss_dssp TTEEE--CC-TTCCHHHHHHHH----TBCGGGEEEEETTEEEEGG-GCCCCCCCTTCEEEEEE
T ss_pred CCEEE--Ec-CCCcHHHHHHHc----CCCCCcEEEEECCEECCcc-ccCCcCCCCCCEEEEEe
Confidence 56654 45 668999998876 5667777777899877543 23445689999999875
No 244
>1qdm_A Prophytepsin; aspartic proteinases, saposin-like domain, zymogen structure, hydrolase; 2.30A {Hordeum vulgare} SCOP: a.64.1.2 b.50.1.2
Probab=63.72 E-value=15 Score=36.80 Aligned_cols=27 Identities=7% Similarity=0.132 Sum_probs=24.5
Q ss_pred CceeeeHHHHhhcCeEEEcCCCEEEEc
Q 016931 279 MEFLFGLDMLRKHQCIIDLKENVLRVG 305 (380)
Q Consensus 279 ~d~iLG~D~L~~~~~~ID~~~~~l~i~ 305 (380)
...|||--||+.+-.+.|+.+++|-|.
T Consensus 449 ~~~ILGd~fl~~~y~vfD~~~~rIGfA 475 (478)
T 1qdm_A 449 PLWILGDVFMGPYHTVFDYGKLRIGFA 475 (478)
T ss_dssp SEEEECHHHHTTEEEEEETTTTEEEEE
T ss_pred CcEEECHHHhccEEEEEECCCCEEEEE
Confidence 457999999999999999999999885
No 245
>2q5w_D Molybdopterin converting factor, subunit 1; MOCO, MPT synthase, MOAD, MOAE, transferase, molybdenum cofactor biosynthesis; 2.00A {Staphylococcus aureus} PDB: 2qie_B*
Probab=63.66 E-value=7.7 Score=28.22 Aligned_cols=55 Identities=15% Similarity=0.157 Sum_probs=39.2
Q ss_pred CEEEEEeCCCCCHHHHHHHHHHHhCCCCcCe--EEecCCeecCCcccchhcCCCCCcEEEEee
Q 016931 11 QIISLDVDPHETVENVKALLEVETQVPLQQQ--QLLYNGREMNNAEKLSALGVKDEDLVMMVS 71 (380)
Q Consensus 11 ~~~~i~V~~~~TV~~LK~~I~~~~gip~~~q--~Li~~Gk~L~D~~tL~~~gI~dg~~I~l~~ 71 (380)
+...+++....||.+|.+.+..... ..... .+..||+....+ .-+++||.|.+..
T Consensus 16 ~~~~~~~~~~~tv~~ll~~l~~~~p-~~~~v~~~v~vNg~~v~~~-----~~L~~gD~V~i~p 72 (77)
T 2q5w_D 16 AQEDIVLEQALTVQQFEDLLFERYP-QINNKKFQVAVNEEFVQKS-----DFIQPNDTVALIP 72 (77)
T ss_dssp SEEECCCSSCEEHHHHHHHHHHHCG-GGTTCCCEEEETTEEECTT-----SEECTTCEEEEEC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHCc-chhcceEEEEECCEECCCC-----CCcCCCCEEEEEC
Confidence 3456777778899999999887742 01233 566799887643 4688999998874
No 246
>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}
Probab=61.80 E-value=19 Score=34.30 Aligned_cols=52 Identities=15% Similarity=0.182 Sum_probs=41.0
Q ss_pred CCEEEEEeCCCCCHHHHHHHHHHHhCCCCcCeEEecCC-eecCC-cccchhcCC
Q 016931 10 EQIISLDVDPHETVENVKALLEVETQVPLQQQQLLYNG-REMNN-AEKLSALGV 61 (380)
Q Consensus 10 g~~~~i~V~~~~TV~~LK~~I~~~~gip~~~q~Li~~G-k~L~D-~~tL~~~gI 61 (380)
-....+.+.+..|+.++++.++..++++++.|.|++.+ ....+ ......|.-
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~t~i~~~~q~~l~~~~~~~~~~~~~~~~~~~ 374 (396)
T 4eut_A 321 MTAHKIYIHSYNTATIFHELVYKQTKIISSNQELIYEGRRLVLEPGRLAQHFPK 374 (396)
T ss_dssp TEEEEEEECTTCBHHHHHHHHHHHHCCCSTTEEEESSSSEECCCSSCBTTSSCC
T ss_pred ceEEEEEcCchhHHHHHHHHHHHhcCCChhhhHHHhcCCCCCCCCCCccccCCC
Confidence 45567888999999999999999999999999999988 33333 345555543
No 247
>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B
Probab=61.51 E-value=12 Score=29.35 Aligned_cols=36 Identities=8% Similarity=0.119 Sum_probs=29.5
Q ss_pred EEEEEeCC-------CCEEEEEeCCCCCHHHHHHHHHHHhCCC
Q 016931 2 RITVMTAD-------EQIISLDVDPHETVENVKALLEVETQVP 37 (380)
Q Consensus 2 ~ItVk~~~-------g~~~~i~V~~~~TV~~LK~~I~~~~gip 37 (380)
+|+|...+ +..+.+-|+++.+..+|..+|..+++++
T Consensus 7 kVKv~y~~~~~~~~~~d~~~i~V~~~i~f~~L~~kI~~Kl~~~ 49 (98)
T 1q1o_A 7 LFRISYNNNSNNTSSSEIFTLLVEKVWNFDDLIMAINSKISNT 49 (98)
T ss_dssp EEEEEECSSCSSCCCCEEEEEEECTTCCHHHHHHHHHHHHHHH
T ss_pred EEEEEecCcccccccCcEEEEEecCCCCHHHHHHHHHHHHcCC
Confidence 55666532 5578999999999999999999999875
No 248
>3qij_A Protein 4.1; cytoskeleton, structural genomics, structural genomics conso SGC; 1.80A {Homo sapiens} PDB: 1gg3_A 3bin_A 2he7_A 2rq1_A
Probab=61.07 E-value=27 Score=32.39 Aligned_cols=72 Identities=8% Similarity=-0.052 Sum_probs=53.0
Q ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCCCcC-eEEecC---C--eecCCcccchhcCCCCCcEEEEeec
Q 016931 1 MRITVMTADEQIISLDVDPHETVENVKALLEVETQVPLQQ-QQLLYN---G--REMNNAEKLSALGVKDEDLVMMVSN 72 (380)
Q Consensus 1 M~ItVk~~~g~~~~i~V~~~~TV~~LK~~I~~~~gip~~~-q~Li~~---G--k~L~D~~tL~~~gI~dg~~I~l~~~ 72 (380)
+.+.|..++|....+.|++.+|+.+|-..|..+.|+.... .-|.|. | ..|+.++++.+.......++++..+
T Consensus 18 ~~~~V~lldgt~~~~~vd~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~~wLd~~k~i~~q~~~~~~~l~frvk 95 (296)
T 3qij_A 18 GHCKVSLLDDTVYECVVEKHAKGQDLLKRVCEHLNLLEEDYFGLAIWDNATSKTWLDSAKEIKKQVRGVPWNFTFNVK 95 (296)
T ss_dssp CEEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHTCSSGGGEEEEEEEETTEEEECCTTSBHHHHC---CCEEEEEES
T ss_pred EEEEEEccCCCEEEEEECCCCCHHHHHHHHHHHcCCCCcceeEEEEEcCCCccchhccchhHHHhcCCCCcEEEEEEE
Confidence 4678999999999999999999999999999999987533 455542 2 3466778887775444456666554
No 249
>1h4r_A Merlin; FERM, neurofibromatosis, NF2, structural protein, cytoskeleton, anti-oncogene; 1.8A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1isn_A 3u8z_A
Probab=59.46 E-value=32 Score=31.97 Aligned_cols=64 Identities=13% Similarity=0.112 Sum_probs=48.7
Q ss_pred EEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCCCc-CeEEec--CCe--ecCCcccchhcCCCCCcE
Q 016931 2 RITVMTADEQIISLDVDPHETVENVKALLEVETQVPLQ-QQQLLY--NGR--EMNNAEKLSALGVKDEDL 66 (380)
Q Consensus 2 ~ItVk~~~g~~~~i~V~~~~TV~~LK~~I~~~~gip~~-~q~Li~--~Gk--~L~D~~tL~~~gI~dg~~ 66 (380)
.+.|..++| .+.+.+++.+|+.+|-..|..+.|+... -.-|.| +|. -|+.+++|.+.+++.+..
T Consensus 24 ~~~V~lldg-~~~~~v~~~t~~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~wL~~~~~i~~q~~~~~~~ 92 (314)
T 1h4r_A 24 TVRIVTMDA-EMEFNCEMKWKGKDLFDLVCRTLGLRETWFFGLQYTIKDTVAWLKMDKKVLDHDVSKEEP 92 (314)
T ss_dssp EEEEECSSC-EEEEEEETTCBHHHHHHHHHHHHTCCCGGGEEEEEEETTEEEECCTTSBGGGSSCCCSSS
T ss_pred EEEEEeCCc-eEEEEeCCCCcHHHHHHHHHHHhCCCCCccceEEEEeCCcCeeCCCccCHHHcCCCCCCC
Confidence 467888888 7889999999999999999999998753 344554 443 367778888887655543
No 250
>1ef1_A Moesin; membrane, FERM domain, tail domain, membrane protein; 1.90A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1sgh_A 1j19_A 2emt_A 2ems_A 2d10_A 2d11_A 2yvc_A 2d2q_A 2zpy_A 1gc7_A 1gc6_A 1ni2_A
Probab=59.45 E-value=29 Score=31.81 Aligned_cols=65 Identities=18% Similarity=0.213 Sum_probs=48.8
Q ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCCCcC-eEEec---CCe--ecCCcccchhcCCCCCcE
Q 016931 1 MRITVMTADEQIISLDVDPHETVENVKALLEVETQVPLQQ-QQLLY---NGR--EMNNAEKLSALGVKDEDL 66 (380)
Q Consensus 1 M~ItVk~~~g~~~~i~V~~~~TV~~LK~~I~~~~gip~~~-q~Li~---~Gk--~L~D~~tL~~~gI~dg~~ 66 (380)
|.+.|..++| ++.+.+++.+|+.+|-..|..+.|+.... .-|.+ +|. .|+.++++.+.+++.+..
T Consensus 2 i~~~V~l~d~-~~~~~v~~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~~wLd~~~~l~~q~~~~~~~ 72 (294)
T 1ef1_A 2 ISVRVTTMDA-ELEFAIQPNTTGKQLFDQVVKTIGLREVWFFGLQYQDTKGFSTWLKLNKKVTAQDVRKESP 72 (294)
T ss_dssp EEEEEEETTE-EEEEEECTTCBHHHHHHHHHHHHTCCCGGGEEEEEEBTTSCEEECCSSSBGGGSCBCCCSS
T ss_pred EEEEEEECCc-eEEEEECCCCcHHHHHHHHHHHcCCCCcceeEEEEECCCCceeecccccCHHhhccCCCCC
Confidence 4678888888 67899999999999999999999987643 34544 342 366678888876655543
No 251
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Probab=57.74 E-value=7.2 Score=39.76 Aligned_cols=33 Identities=15% Similarity=0.122 Sum_probs=30.3
Q ss_pred EEEEeCCCCCHHHHHHHHHHHhCCCCcCeEEec
Q 016931 13 ISLDVDPHETVENVKALLEVETQVPLQQQQLLY 45 (380)
Q Consensus 13 ~~i~V~~~~TV~~LK~~I~~~~gip~~~q~Li~ 45 (380)
..+.|..++|+.+||+.|+.++|+|+++|||+.
T Consensus 38 ~~~rv~k~~~~~~l~~~va~~lg~~~~~~RlW~ 70 (530)
T 2ylm_A 38 TVFKVLKNSSLAEFVQSLSQTMGFPQDQIRLWP 70 (530)
T ss_dssp EEEEEETTSBHHHHHHHHHHHHTSCGGGEEEEE
T ss_pred ceEEEcCcCCHHHHHHHHHHHhCcCcccEEEEE
Confidence 367888999999999999999999999999974
No 252
>3vla_A EDGP; extracellular, inhibitor, plant protein; HET: NAG; 0.95A {Daucus carota} PDB: 3vlb_A
Probab=55.14 E-value=51 Score=32.05 Aligned_cols=26 Identities=12% Similarity=0.146 Sum_probs=21.5
Q ss_pred eeEEeeeecC--eeEEEEEcCCcccccc
Q 016931 196 MLYVDMEVNG--IPLKAFVDSGAQSTII 221 (380)
Q Consensus 196 ~lyv~v~Ing--~~v~alVDTGA~~siI 221 (380)
..|+++.|.- +++.+++|||++.+-+
T Consensus 21 ~Y~~~i~iGTPpq~~~v~~DTGS~~lWv 48 (413)
T 3vla_A 21 QYVTTINQRTPLVSENLVVDLGGRFLWV 48 (413)
T ss_dssp CEEEEEEETTTTEEEEEEEETTCSSEEE
T ss_pred eEEEEEEcCCCCcceEEEEeCCChhhhc
Confidence 5788899976 7799999999986655
No 253
>1rws_A Hypothetical protein PF1061; residual dipolar couplings, structural genomics, unknown FUN; NMR {Pyrococcus furiosus} SCOP: d.15.3.2 PDB: 1sf0_A
Probab=54.62 E-value=4.7 Score=29.81 Aligned_cols=48 Identities=17% Similarity=0.191 Sum_probs=36.3
Q ss_pred EEEeCCCCCHHHHHHHHHHHhCCCCcCeEEecCCeecCCcccchhcCCCCCcEEEEe
Q 016931 14 SLDVDPHETVENVKALLEVETQVPLQQQQLLYNGREMNNAEKLSALGVKDEDLVMMV 70 (380)
Q Consensus 14 ~i~V~~~~TV~~LK~~I~~~~gip~~~q~Li~~Gk~L~D~~tL~~~gI~dg~~I~l~ 70 (380)
.++++...||.+|.+.+ +++.....+..||+.+..+ .-+++||.|-+.
T Consensus 24 ~~~~~~~~Tv~dLl~~L----~~~~~~v~VavNg~~v~~~-----~~L~dGD~V~i~ 71 (77)
T 1rws_A 24 EIEWREGMKVRDILRAV----GFNTESAIAKVNGKVVLED-----DEVKDGDFVEVI 71 (77)
T ss_dssp CCCCCSSCCHHHHHHTT----TCSSCSSCEEETTEEECSS-----SCCCSSCCCBCS
T ss_pred EEECCCCCcHHHHHHHh----CCCCcCEEEEECCEECCCC-----CCcCCCCEEEEE
Confidence 35666778999998764 4677666777899988654 568899988775
No 254
>2g1e_A Hypothetical protein TA0895; MOAD, molybdopterin, transferase; NMR {Thermoplasma acidophilum} PDB: 2k22_A
Probab=53.62 E-value=34 Score=25.33 Aligned_cols=57 Identities=16% Similarity=0.235 Sum_probs=37.3
Q ss_pred EEEeCCCCCHHHHHHHHHHHhC------C-----CCcCeEEecCCeecCCcccchhcCCCCCcEEEEee
Q 016931 14 SLDVDPHETVENVKALLEVETQ------V-----PLQQQQLLYNGREMNNAEKLSALGVKDEDLVMMVS 71 (380)
Q Consensus 14 ~i~V~~~~TV~~LK~~I~~~~g------i-----p~~~q~Li~~Gk~L~D~~tL~~~gI~dg~~I~l~~ 71 (380)
.++++...||.+|.+.+..+.. + ......+..||+...... -.+.-+++||.|.++.
T Consensus 18 ~~~~~~~~tv~~ll~~l~~~~p~~~~~~l~~~~g~~~~v~v~vN~~~v~~~~-~~~~~l~~gD~V~i~p 85 (90)
T 2g1e_A 18 EETFNGISKISELLERLKVEYGSEFTKQMYDGNNLFKNVIILVNGNNITSMK-GLDTEIKDDDKIDLFP 85 (90)
T ss_dssp EEEESSCCBHHHHHHHHHHHSCHHHHHHHCCSSCSTTTCEEEESSSBGGGTC-SSSCBCCTTCEEEEEC
T ss_pred EEEcCCCCcHHHHHHHHHHHCcchhhhccccccCcCcceEEEECCEEccccC-CCCcCCCCCCEEEEeC
Confidence 3456666899999999988752 1 013345667887765321 1234589999999874
No 255
>3u52_E Phenol hydroxylase component PHO; 4-helix bundle, dioxygen, hydrocarbons, oxidore; HET: MPO EPE; 1.95A {Pseudomonas stutzeri} PDB: 2inn_E* 2inp_E
Probab=53.49 E-value=38 Score=27.38 Aligned_cols=60 Identities=15% Similarity=0.215 Sum_probs=47.5
Q ss_pred CEEEEEeCCCCCHHHHHHHHHH-HhC-------CCCcCeEEecCCeecCC--cccchhcCCCCCcEEEEe
Q 016931 11 QIISLDVDPHETVENVKALLEV-ETQ-------VPLQQQQLLYNGREMNN--AEKLSALGVKDEDLVMMV 70 (380)
Q Consensus 11 ~~~~i~V~~~~TV~~LK~~I~~-~~g-------ip~~~q~Li~~Gk~L~D--~~tL~~~gI~dg~~I~l~ 70 (380)
.-+.+-|+++++..+|-+.+-. .++ |+.++-.+..+|++... +++|++.||..-+.|.++
T Consensus 38 ap~~~p~pP~mpFg~lv~~vl~~~~~~hPDfa~idws~v~W~l~g~pftPD~~kSLaenG~~HKs~lrf~ 107 (119)
T 3u52_E 38 APFALLVQPGMTFSALVDEILKPATAAHPDSAKADFLNAEWLLNDEPFTPKADASLKEQGIDHKSMLTVT 107 (119)
T ss_dssp SCEEEEECTTSBHHHHHHHTHHHHTTTSTTGGGCCTTSSEEEETTEEECCCTTSBTTTTTCCTTEEEEEE
T ss_pred CceeecCCCCCCHHHHHHHhcchhhhcCCccccCCcchheEEECCccCCCChhhhHHHcCCCchheEEEe
Confidence 3467899999999999865544 333 55556678889999874 589999999999999887
No 256
>2lnm_A Protein TIC 40, chloroplastic; translocon, import, TIC40-NP, protein transport; NMR {Arabidopsis thaliana}
Probab=53.10 E-value=33 Score=24.17 Aligned_cols=23 Identities=9% Similarity=0.410 Sum_probs=16.2
Q ss_pred HHHHHHHhhcCHHHHHHhcCCCHHHH
Q 016931 104 ANLMTQLFQSDPELAQVLLGNDLNKL 129 (380)
Q Consensus 104 P~~l~qL~~~nP~La~ai~~~d~~~~ 129 (380)
+++++.+. +||+++.++ .||+..
T Consensus 2 ~e~~~kl~-~dPe~~~~m--~dP~~~ 24 (62)
T 2lnm_A 2 EEVISKIM-ENPDVAMAF--QNPRVQ 24 (62)
T ss_dssp HHHHHHHT-TSHHHHHHT--TSHHHH
T ss_pred HHHHHHHH-cChHHHHHc--CCHHHH
Confidence 45666665 599999999 677443
No 257
>2l9b_A MRNA 3'-END-processing protein RNA15; 3' END mRNA maturation, transcription; NMR {Saccharomyces cerevisiae}
Probab=51.55 E-value=13 Score=29.76 Aligned_cols=26 Identities=27% Similarity=0.365 Sum_probs=18.0
Q ss_pred HHHHHhcCHHHHHHHhhcCHHHHHHh
Q 016931 96 FQQHIRNDANLMTQLFQSDPELAQVL 121 (380)
Q Consensus 96 ~~q~~l~nP~~l~qL~~~nP~La~ai 121 (380)
|++....||+..+.|..++|+|+-|+
T Consensus 61 mK~~~~~nP~~a~~LL~q~PQLAyAl 86 (109)
T 2l9b_A 61 FQEWTRAHPEDAASLLELCPQLSFVT 86 (109)
T ss_dssp HHHHHHHCHHHHHHHHHHCHHHHHHH
T ss_pred HHHHHHhCHHHHHHHHHHCchHHHHH
Confidence 44455677777777777777777665
No 258
>2hj1_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; 2.10A {Haemophilus influenzae} SCOP: d.15.3.4
Probab=50.86 E-value=20 Score=27.97 Aligned_cols=57 Identities=16% Similarity=0.147 Sum_probs=41.6
Q ss_pred CCEEEEEeCCCCCHHHHHHHHHHHh---CCCCcCeEEecCCeecCCcccchhcCCCCCcEEEEee
Q 016931 10 EQIISLDVDPHETVENVKALLEVET---QVPLQQQQLLYNGREMNNAEKLSALGVKDEDLVMMVS 71 (380)
Q Consensus 10 g~~~~i~V~~~~TV~~LK~~I~~~~---gip~~~q~Li~~Gk~L~D~~tL~~~gI~dg~~I~l~~ 71 (380)
...+.+++....||.++-+...-.. .|......+-.+|+... .+.-+++||.|-+.+
T Consensus 25 q~~~~~~v~~g~TV~daI~~~gi~~~~peIdl~~~~V~Vng~~v~-----~d~~L~dGDRVEIyr 84 (97)
T 2hj1_A 25 YYLKSFQVDEGITVQTAITQSGILSQFPEIDLSTNKIGIFSRPIK-----LTDVLKEGDRIEIYR 84 (97)
T ss_dssp EEEEEEEEETTCBHHHHHHHHTHHHHCTTCCTTTSEEEEEECSCC-----TTCBCCTTCEEEECC
T ss_pred CEEEEEEcCCCCcHHHHHHHcCCCccCCcccccccEEEEcCEECC-----CCccCCCCCEEEEEe
Confidence 3456788999999999988765422 34445567778888776 444588999999875
No 259
>2llv_A Heat shock protein STI1; DP domain, alpha helix, chaperone; NMR {Saccharomyces cerevisiae}
Probab=49.36 E-value=4.4 Score=29.78 Aligned_cols=23 Identities=26% Similarity=0.540 Sum_probs=15.0
Q ss_pred cCHHHHHHHhhcCHHHHHHhcCCCHH
Q 016931 102 NDANLMTQLFQSDPELAQVLLGNDLN 127 (380)
Q Consensus 102 ~nP~~l~qL~~~nP~La~ai~~~d~~ 127 (380)
++|++.+.|. +||+++.++ .||+
T Consensus 11 ~~p~~~~kl~-~dP~t~~~~--~DP~ 33 (71)
T 2llv_A 11 ADPNLIENLK-KNPKTSEMM--KDPQ 33 (71)
T ss_dssp HSSSCHHHHH-HSSTTHHHH--HSCT
T ss_pred cChHHHHHHH-cChHHHHHh--cCHH
Confidence 4666666654 478888777 4563
No 260
>1wgy_A RAP guanine nucleotide exchange factor 5; ubiquitin fold, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=47.16 E-value=85 Score=24.73 Aligned_cols=68 Identities=7% Similarity=0.218 Sum_probs=47.2
Q ss_pred EEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCCCcCeEEe---cCCee--cCCcccchhcCCCCCcEEEEeec
Q 016931 5 VMTADEQIISLDVDPHETVENVKALLEVETQVPLQQQQLL---YNGRE--MNNAEKLSALGVKDEDLVMMVSN 72 (380)
Q Consensus 5 Vk~~~g~~~~i~V~~~~TV~~LK~~I~~~~gip~~~q~Li---~~Gk~--L~D~~tL~~~gI~dg~~I~l~~~ 72 (380)
|-..+..-+++.+..+.|+.+++..++.+.+...+.+.|. ++|.. |++++.--.-.+.-...|++-.+
T Consensus 14 Vy~~Dhsy~tvr~~v~~sa~eIl~~va~kl~~~~e~l~Lv~v~ssGEk~~lqp~d~si~tsL~~NgRLfvc~k 86 (104)
T 1wgy_A 14 VYITEHSYVSVKAKVSSIAQEILKVVAEKIQYAEEDLALVAITFSGEKHELQPNDLVISKSLEASGRIYVYRK 86 (104)
T ss_dssp EECSSSCEEEECCCTTCBSHHHHHHHHHHHTSCGGGEEEEEECSSCCCCBCCTTSBSSCCSSCSSCEEEEEEC
T ss_pred EEeccCceEEEEEeccchHHHHHHHHHHHhcCCccceEEEEEccCCcEeecCCcceEEEeeccccceEEEeeh
Confidence 3444566678889999999999999999999887788886 67743 55543322223334566777654
No 261
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=46.93 E-value=42 Score=34.40 Aligned_cols=65 Identities=17% Similarity=0.150 Sum_probs=48.6
Q ss_pred EEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCCCc-CeEEecC---C--eecCCcccchhcCCCCCcEE
Q 016931 2 RITVMTADEQIISLDVDPHETVENVKALLEVETQVPLQ-QQQLLYN---G--REMNNAEKLSALGVKDEDLV 67 (380)
Q Consensus 2 ~ItVk~~~g~~~~i~V~~~~TV~~LK~~I~~~~gip~~-~q~Li~~---G--k~L~D~~tL~~~gI~dg~~I 67 (380)
.+.|..++| ++.+.|++.+|+.+|-..|..+.|+... ..-|.|. | ..|+.++++.+.+++.+..+
T Consensus 6 ~v~V~llDg-t~e~~vd~~tt~~ell~~V~~~LgL~e~~~FGL~~~d~~~~~~WLd~~k~i~~q~~~~~~~~ 76 (575)
T 2i1j_A 6 NVRVTTMDA-ELEFAIQQTTTGKQLFDQVVKTIGLREVWFFGLQYTDSKGDLTWIKLYKKVMQQDVKKENPL 76 (575)
T ss_dssp EEEEECSSC-EEEEEEETTCBHHHHHHHHHHHHTCCCGGGEEEEEEBTTSCEEECCTTSBGGGSCBCCCSSE
T ss_pred EEEEEeCCC-eEEEEECCCCCHHHHHHHHHHHcCCCCccceeEEEEecCcchhHhhccccHHHhcccCCCCe
Confidence 577888888 6789999999999999999999998653 3455542 2 24666788888776655543
No 262
>1wgr_A Growth factor receptor-bound protein 7; RA domain, GRB7, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=46.21 E-value=35 Score=26.79 Aligned_cols=70 Identities=19% Similarity=0.188 Sum_probs=51.1
Q ss_pred EEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCCCc-CeEEe------cCCeecCCcc----cchhcCCCCCcEEEEee
Q 016931 3 ITVMTADEQIISLDVDPHETVENVKALLEVETQVPLQ-QQQLL------YNGREMNNAE----KLSALGVKDEDLVMMVS 71 (380)
Q Consensus 3 ItVk~~~g~~~~i~V~~~~TV~~LK~~I~~~~gip~~-~q~Li------~~Gk~L~D~~----tL~~~gI~dg~~I~l~~ 71 (380)
|+|-..+|....+.|++.+|+.++-+++..+.++..+ ...|+ +--+.++|.. .|+...+..+..++..+
T Consensus 12 vkvf~~Dgssksi~V~~~~Ta~dv~~~L~~K~~~~~~~~WaLvE~~P~L~~ER~~EDHE~vvevl~~W~~~s~nr~~F~k 91 (100)
T 1wgr_A 12 VKVYSEDGACRSVEVAAGATARHVCEMLVQRAHALSDETWGLVECHPHLALERGLEDHESVVEVQAAWPVGGDSRFVFRK 91 (100)
T ss_dssp EEEEETTSCEEEEEECTTCCHHHHHHHHHCSSSCCCCCCCCEEEEETTTTEEEEECSSSCHHHHHTTSCSSSCCEEEECS
T ss_pred EEEEecCCCEEEEEECCCCcHHHHHHHHHHHcCCCCCCCeEEEEecCCCCcEEeccCchhHHHHHhhCccCCCcEEEEec
Confidence 4556778999999999999999999999999987643 33443 1236688764 35666676677777665
Q ss_pred c
Q 016931 72 N 72 (380)
Q Consensus 72 ~ 72 (380)
+
T Consensus 92 r 92 (100)
T 1wgr_A 92 N 92 (100)
T ss_dssp C
T ss_pred c
Confidence 4
No 263
>2eel_A Cell death activator CIDE-A; CIDE-N domain, cell death- inducing DFFA-like effector A, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=45.28 E-value=39 Score=26.06 Aligned_cols=46 Identities=11% Similarity=0.181 Sum_probs=33.4
Q ss_pred CHHHHHHHHHHHhCCCCcCeEEe--cCCeecCCcccchhcCCCCCcEEEEe
Q 016931 22 TVENVKALLEVETQVPLQQQQLL--YNGREMNNAEKLSALGVKDEDLVMMV 70 (380)
Q Consensus 22 TV~~LK~~I~~~~gip~~~q~Li--~~Gk~L~D~~tL~~~gI~dg~~I~l~ 70 (380)
++++|+.+...+++++...-+|. .+|..++|+.-+..+ +..|+.++
T Consensus 29 sL~EL~~K~~~~l~l~~~~~~lvLeeDGT~VddEeyF~tL---p~nT~lmv 76 (91)
T 2eel_A 29 SLQELISKTLDALVIATGLVTLVLEEDGTVVDTEEFFQTL---GDNTHFMI 76 (91)
T ss_dssp SHHHHHHHHHHHTTCSSSCEEEEETTTCCBCCCHHHHTTS---CSSEEEEE
T ss_pred CHHHHHHHHHHHhcCCCCCcEEEEeeCCcEEechhhhhhC---CCCCEEEE
Confidence 79999999999999976555554 479999887665555 24455444
No 264
>1b5f_A Protein (cardosin A); hydrolase, aspartic proteinase; HET: NAG FUC BMA MAN; 1.72A {Cynara cardunculus} SCOP: b.50.1.2
Probab=44.78 E-value=14 Score=33.02 Aligned_cols=29 Identities=17% Similarity=0.182 Sum_probs=24.0
Q ss_pred eeecCee-------EEEEEcCCccccccCHHHHHHc
Q 016931 201 MEVNGIP-------LKAFVDSGAQSTIISKSCAERC 229 (380)
Q Consensus 201 v~Ing~~-------v~alVDTGA~~siIs~~~a~rl 229 (380)
+.|+|+. ..++||||.+.+.++.+.++.+
T Consensus 197 i~v~~~~~~~~~~~~~aiiDTGTt~~~lP~~~~~~i 232 (239)
T 1b5f_A 197 VLIGDKSTGFCAPGCQAFADSGTSLLSGPTAIVTQI 232 (239)
T ss_dssp EEETTEECCTTTTCEEEEECTTCSSEEECHHHHHHH
T ss_pred EEECCEEecccCCCCEEEEecCcchhhCCHHHHHHH
Confidence 5677764 4799999999999999988764
No 265
>2inc_C TOUB protein; DIIRON, 4-helix bundle, carboxylate bridge, metalloenzyme, oxidoreductase; HET: P6G; 1.85A {Pseudomonas stutzeri} SCOP: d.15.12.1 PDB: 2ind_C* 3n20_C* 1t0r_C 1t0s_C 1t0q_C* 3n1x_C 3n1y_C* 3n1z_C* 2rdb_C* 3rn9_C* 3rna_C 3rnb_C 3rnc_C 3rne_C 3rnf_C* 3rng_C
Probab=40.23 E-value=1.2e+02 Score=22.93 Aligned_cols=58 Identities=12% Similarity=0.160 Sum_probs=46.7
Q ss_pred EEEEeCCCCCHHHHHHHHHHHh-C--CCC---cCeEEecCC--eecCCcccchhcCCCCCcEEEEe
Q 016931 13 ISLDVDPHETVENVKALLEVET-Q--VPL---QQQQLLYNG--REMNNAEKLSALGVKDEDLVMMV 70 (380)
Q Consensus 13 ~~i~V~~~~TV~~LK~~I~~~~-g--ip~---~~q~Li~~G--k~L~D~~tL~~~gI~dg~~I~l~ 70 (380)
.-+.|+.+.|+.++-++++-.. | +++ .-.+..++| +.|..+.|+++.||++-+.|-+.
T Consensus 15 ~LV~VDt~dTmdqVA~kvA~HsVGrRV~p~p~~~~rVr~~G~~~~~pr~~tvae~gl~P~e~vev~ 80 (83)
T 2inc_C 15 QLVPVDTEDTMDQVAEKCAYHSINRRVHPQPEKILRVRRHEDGTLFPRGMIVSDAGLRPTETLDII 80 (83)
T ss_dssp EEEEECTTCBHHHHHHHHHTTTBTTTBCCCTTSEEEEEETTTCCEECTTCBGGGSCCCTTCEEEEE
T ss_pred EEEEecCCCcHHHHHHHHhhhhcceecCCCCCCeEEEEecCCccCCCCCCEeeccCCCCceEEEEE
Confidence 4578999999999999998875 2 322 245677888 88999999999999999888764
No 266
>3hvz_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.20A {Clostridium leptum}
Probab=38.63 E-value=58 Score=24.12 Aligned_cols=62 Identities=13% Similarity=0.178 Sum_probs=42.3
Q ss_pred EEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCCCcCeEEecCCeecCCcccchhcCCCCCcEEEEeec
Q 016931 2 RITVMTADEQIISLDVDPHETVENVKALLEVETQVPLQQQQLLYNGREMNNAEKLSALGVKDEDLVMMVSN 72 (380)
Q Consensus 2 ~ItVk~~~g~~~~i~V~~~~TV~~LK~~I~~~~gip~~~q~Li~~Gk~L~D~~tL~~~gI~dg~~I~l~~~ 72 (380)
+|+|.+++|+. ++++...|+.||=..|....+-.. .--..+|+...-+ +-+++||+|-++..
T Consensus 7 ~i~v~tP~G~~--~~lp~GaT~~D~A~~Ih~~lg~~~--v~AkVNG~~v~L~-----~~L~~gd~VeIit~ 68 (78)
T 3hvz_A 7 EVFVFTPKGDV--ISLPIGSTVIDFAYAIHSAVGNRM--IGAKVDGRIVPID-----YKVKTGEIIDVLTT 68 (78)
T ss_dssp EEEEECTTSCE--EEEETTCBHHHHHHHHCHHHHHTE--EEEEETTEEECTT-----CBCCTTCBEEEEEC
T ss_pred eEEEECCCCCE--EEecCCCCHHHHHHHhhhhhhcce--EEEEECCEEcCCC-----cccCCCCEEEEEcc
Confidence 57888999986 456678899999888866554211 1123477765533 45788999988754
No 267
>1t6e_X Xylanase inhibitor; two beta-barrel domain structure, hydrolase inhibitor; 1.70A {Triticum aestivum} SCOP: b.50.1.2 PDB: 1t6g_A 2b42_A 3hd8_A
Probab=37.34 E-value=66 Score=30.62 Aligned_cols=25 Identities=4% Similarity=0.035 Sum_probs=19.9
Q ss_pred ceeEEeeeecCeeEEEEEcCCccccccC
Q 016931 195 VMLYVDMEVNGIPLKAFVDSGAQSTIIS 222 (380)
Q Consensus 195 ~~lyv~v~Ing~~v~alVDTGA~~siIs 222 (380)
...|+++.|. .| +++|||++.+-+.
T Consensus 14 ~~Y~~~i~iG-tP--v~~DTGSs~lWv~ 38 (381)
T 1t6e_X 14 SLYTIPFHDG-AS--LVLDVAGPLVWST 38 (381)
T ss_dssp CCEEEEEETT-EE--EEEETTCCCEEEC
T ss_pred cEEEEEEeCC-CE--EEEECCCCceEEe
Confidence 3578899995 46 9999999988764
No 268
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=36.93 E-value=52 Score=29.08 Aligned_cols=52 Identities=12% Similarity=0.242 Sum_probs=34.8
Q ss_pred HHHHHhhCCCccHHHHHHHHHHHHhhcHHHHHHHHHhcCCccccccceeEEeeeecCee
Q 016931 149 EEMALLYADPFDVEAQKKIEAAIRQKGIDENWAAALEHNPEAFARVVMLYVDMEVNGIP 207 (380)
Q Consensus 149 ~el~~l~~dP~~~E~Q~~I~E~Irq~~i~en~~~A~E~~Pe~f~~~~~lyv~v~Ing~~ 207 (380)
.++..+..++-+++.+++|.|+|+ .|..|+...|+ +..+.-.|-.++-.|..
T Consensus 88 ~~l~~l~~~~~~~~Vk~kil~li~------~W~~~f~~~~~-~~~i~~~y~~Lk~~G~~ 139 (220)
T 1dvp_A 88 EMFSSFLESTPHENVRQKMLELVQ------TWAYAFRSSDK-YQAIKDTMTILKAKGHT 139 (220)
T ss_dssp HHHHHHHHHCSCHHHHHHHHHHHH------HHHHHTTTCSS-CCHHHHHHHHHHHTTCC
T ss_pred HHHHHHhcCCCcHHHHHHHHHHHH------HHHHHhccchH-HHHHHHHHHHHhhcCcc
Confidence 345555555668899999999999 88888877775 44444445444444443
No 269
>1f2r_I Inhibitor of caspase-activated DNAse; alpha-beta roll, protein-protein complex, DNA binding protein; NMR {Mus musculus} SCOP: d.15.2.1
Probab=35.99 E-value=72 Score=25.00 Aligned_cols=49 Identities=8% Similarity=0.116 Sum_probs=34.0
Q ss_pred CCHHHHHHHHHHHhCCCCc----CeEEecCCeecCCcccchhcCCCCCcEEEEee
Q 016931 21 ETVENVKALLEVETQVPLQ----QQQLLYNGREMNNAEKLSALGVKDEDLVMMVS 71 (380)
Q Consensus 21 ~TV~~LK~~I~~~~gip~~----~q~Li~~Gk~L~D~~tL~~~gI~dg~~I~l~~ 71 (380)
.++++|+.+...+++++.. ...|..+|..++|+.-+..+. ++..+++..
T Consensus 37 ~SL~EL~~K~~~~l~l~~~~~~~~lvLeeDGT~VddEeYF~tLp--~nT~lmvL~ 89 (100)
T 1f2r_I 37 SSLEELRSKACELLAIDKSLTPITLVLAEDGTIVDDDDYFLCLP--SNTKFVALA 89 (100)
T ss_dssp SSHHHHHHHHHHHHCCCGGGCSCEEEESSSCCBCCSSSSSSSSC--SCCEEEEEC
T ss_pred CCHHHHHHHHHHHhccCCCCCceEEEEeeCCcEEechhHhhcCC--CCCEEEEEc
Confidence 3799999999999999753 334445899998876655542 444444443
No 270
>2q2f_A Selenoprotein S; anti-parallel coiled-coil, endoplasmic reticulum, membrane, selenocysteine, transmembrane, structural genomics; HET: MSE; 1.50A {Homo sapiens}
Probab=35.42 E-value=1.4e+02 Score=22.56 Aligned_cols=20 Identities=30% Similarity=0.612 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHhhcHHHHHHH
Q 016931 162 EAQKKIEAAIRQKGIDENWAA 182 (380)
Q Consensus 162 E~Q~~I~E~Irq~~i~en~~~ 182 (380)
|-|+..+|.-|++.|+ +|+.
T Consensus 69 eKQkqlEEeKR~qkIe-~We~ 88 (89)
T 2q2f_A 69 EKLKQLEEEKRRQKIE-MWDS 88 (89)
T ss_dssp HHHHHHHHHHHHHHHH-HHHH
T ss_pred HHHHHHHHHHHHHHHH-HHhc
Confidence 8899999999999997 6653
No 271
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Probab=35.09 E-value=25 Score=35.68 Aligned_cols=58 Identities=9% Similarity=0.179 Sum_probs=47.6
Q ss_pred EEeCCCCCHHHHHHHHHHHhCCCCcCeEEecC----C--eecC-Ccccchhc--CCCCCcEEEEeec
Q 016931 15 LDVDPHETVENVKALLEVETQVPLQQQQLLYN----G--REMN-NAEKLSAL--GVKDEDLVMMVSN 72 (380)
Q Consensus 15 i~V~~~~TV~~LK~~I~~~~gip~~~q~Li~~----G--k~L~-D~~tL~~~--gI~dg~~I~l~~~ 72 (380)
+-|+.+.+|.+|-..|.+..|+|++.-..+|. + ..|+ ...|+.+. .+.+||+|..-+.
T Consensus 151 ~~v~~~~kv~~l~~~i~~~~g~p~dt~l~lyEEi~~~~ie~l~~~~~t~~~~~~eL~~GdII~fQ~~ 217 (530)
T 2ylm_A 151 IYTPISCKIRDLLPVMCDRAGFIQDTSLILYEEVKPNLTERIQDYDVSLDKALDELMDGDIIVFQKD 217 (530)
T ss_dssp EEEETTCBGGGTHHHHHHHHTCCTTCCEEEEEEEETTEEEECCCSSSBHHHHSTTCCTTEEEEEEEC
T ss_pred EEECCCCCHHHHHHHHHHHcCCCCCCceEEEEecCCCceeEcccccccHHHHHhcccCCCEEEEEec
Confidence 56888999999999999999999987655554 2 3466 46899999 9999999988764
No 272
>2ns5_A Partitioning-defective 3 homolog; cell polarity, N-terminal domain, PB1 domain, asymmetric membrane localization, signaling protein; NMR {Rattus norvegicus}
Probab=34.55 E-value=1.5e+02 Score=22.45 Aligned_cols=67 Identities=15% Similarity=0.137 Sum_probs=42.5
Q ss_pred CEEEEEeCCCCEEEEEe-CCCCCHHHHHHHHHHHh----CCCCcC-eE---Eec-CCeecCCcccchhcCCCCCcEEEE
Q 016931 1 MRITVMTADEQIISLDV-DPHETVENVKALLEVET----QVPLQQ-QQ---LLY-NGREMNNAEKLSALGVKDEDLVMM 69 (380)
Q Consensus 1 M~ItVk~~~g~~~~i~V-~~~~TV~~LK~~I~~~~----gip~~~-q~---Li~-~Gk~L~D~~tL~~~gI~dg~~I~l 69 (380)
|+|||.. ++..+.+.. +...||.+|-+.--.++ +-.++. .. |-+ +|-+|+.+..|.+. +.|.+.|.-
T Consensus 3 MKvtV~f-g~~~vvVPC~dg~~tV~~L~~~A~~RY~K~~~k~~~~~v~V~~l~~~~ggiLD~DD~l~dV-ldD~e~i~A 79 (85)
T 2ns5_A 3 FKVTVCF-GRTRVDVPCGDGRMKVFSLIQQAVTRYRKAVAKDPNYWIQVHRLEHGDGGILDLDDILCDV-ADDKDRLVA 79 (85)
T ss_dssp EEEEEEE-TTEEEEEEESSSCCCHHHHHHHHHHHHHHHTTCCTTSCEEEEEEECSSSCEECTTSCHHHH-SCTTEEEEE
T ss_pred cEEEEEE-CCEEEEEECCCCcccHHHHHHHHHHHHHHhcCCCCCcEEEEEEEEeCCCcEeCcccchhhh-ccCcceEEE
Confidence 8999998 345566666 45679999876555543 332332 22 224 67788888888876 556666543
No 273
>3ge3_C Toluene-4-monooxygenase system protein B; DIIRON hydroxylase, effector protein, T201A, aromatic hydrocarbons catabolism, FAD, flavoprotein; 1.52A {Pseudomonas mendocina} SCOP: d.15.12.0 PDB: 3dhh_C* 3dhg_C* 3dhi_C 3ge8_C 3i5j_C 3i63_C 3q14_C 3q2a_C* 3q3m_C* 3q3n_C* 3q3o_C* 3rmk_C* 3ri7_C*
Probab=34.49 E-value=1.5e+02 Score=22.41 Aligned_cols=58 Identities=10% Similarity=0.167 Sum_probs=47.3
Q ss_pred EEEEeCCCCCHHHHHHHHHHHh-C--CCC--cCeEEecCCee--cCCcccchhcCCCCCcEEEEe
Q 016931 13 ISLDVDPHETVENVKALLEVET-Q--VPL--QQQQLLYNGRE--MNNAEKLSALGVKDEDLVMMV 70 (380)
Q Consensus 13 ~~i~V~~~~TV~~LK~~I~~~~-g--ip~--~~q~Li~~Gk~--L~D~~tL~~~gI~dg~~I~l~ 70 (380)
.-+.|+.+.|+.++-++++... | +.+ .-.+..++|.. |..+.|+++.||++=+.|-+.
T Consensus 17 ~Lv~VDt~dtmdqVA~k~A~h~VGrrv~p~pg~lrVr~~G~~~~~Pr~mtVaeaGl~Pme~vev~ 81 (84)
T 3ge3_C 17 QLVVVDLNDSMDQVAEKVAYHCVNRRVAPREGVMRVRKHRSTELFPRDMTIAESGLNPTEVIDVV 81 (84)
T ss_dssp EEEEEETTCBHHHHHHHHHHTTBTTTBCCCSSCEEEEETTCSCBCCTTCBHHHHCCCTTCEEEEE
T ss_pred EEEEecCCCcHHHHHHHHhhhhcceeeCCCCCcEEEEECCCcccCCCCCEeeccCCCcceEEEEE
Confidence 4578999999999999998875 3 322 35677889987 889999999999999988765
No 274
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=34.27 E-value=2.2e+02 Score=24.39 Aligned_cols=47 Identities=15% Similarity=0.146 Sum_probs=25.4
Q ss_pred HhhHHHHHHhh-CCCccHHHHHHHHHH-------HHhhcHHHHHHHHHhcCCccc
Q 016931 145 RRQEEEMALLY-ADPFDVEAQKKIEAA-------IRQKGIDENWAAALEHNPEAF 191 (380)
Q Consensus 145 ~~~~~el~~l~-~dP~~~E~Q~~I~E~-------Irq~~i~en~~~A~E~~Pe~f 191 (380)
...+.|+..++ ++.+|++.-+.+.+. ++.++++-+.+.+-|-.|-+-
T Consensus 95 ~akr~EL~aL~~a~~~DeakI~aL~~Ei~~Lr~qL~~~R~k~~~em~KeGip~g~ 149 (175)
T 3lay_A 95 ISKRYEYNALLTASSPDTAKINAVAKEMESLGQKLDEQRVKRDVAMAQAGIPRGA 149 (175)
T ss_dssp HHHHHHHHHHHTSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC---
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 34556776555 677887655543333 344455555666666777543
No 275
>2lgx_A Fermitin family homolog 2; kindlin, membrane, integrin activation, cell adhesion; NMR {Homo sapiens}
Probab=34.25 E-value=21 Score=28.50 Aligned_cols=61 Identities=13% Similarity=0.173 Sum_probs=47.7
Q ss_pred CEEEEEeCCCCCHHHHHHHHHHHhCCCC--cCeEEecCC---eecCCcccchhcCCCCCcEEEEee
Q 016931 11 QIISLDVDPHETVENVKALLEVETQVPL--QQQQLLYNG---REMNNAEKLSALGVKDEDLVMMVS 71 (380)
Q Consensus 11 ~~~~i~V~~~~TV~~LK~~I~~~~gip~--~~q~Li~~G---k~L~D~~tL~~~gI~dg~~I~l~~ 71 (380)
..++++|..+.-|.-+.-+|-++.+++. .+--|.+-- ..|+-..||..|||+.+..++...
T Consensus 36 ~~~~lrV~GdlHIGGvmLkLVE~i~i~~dWSDhaLWWp~k~~WLlkt~~tLDk~giqADa~L~ftp 101 (112)
T 2lgx_A 36 RDVTLRVTGEVHIGGVMLKLVEKLDVKKDWSDHALWWEKKRTWLLKTHWTLDKYGIQADAKLQFTP 101 (112)
T ss_dssp BCCEECCCTTSCHHHHHHHHHHHCCSCCCSSSSBEEETTTTEEECCTTSCHHHHTCCTTCBBCBBC
T ss_pred ccEEEEEeeccccccchhhhhhhhcccccchHhhhhhhhhchhhhcchhhHhhhceeccccceecC
Confidence 5578999999999999999988877655 445565433 346778899999999999888764
No 276
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=33.02 E-value=85 Score=26.47 Aligned_cols=52 Identities=15% Similarity=0.392 Sum_probs=35.7
Q ss_pred HHHHHhhCCCccHHHHHHHHHHHHhhcHHHHHHHHHhcCCccccccceeEEeeeecCee
Q 016931 149 EEMALLYADPFDVEAQKKIEAAIRQKGIDENWAAALEHNPEAFARVVMLYVDMEVNGIP 207 (380)
Q Consensus 149 ~el~~l~~dP~~~E~Q~~I~E~Irq~~i~en~~~A~E~~Pe~f~~~~~lyv~v~Ing~~ 207 (380)
.++..+.....+++.+++|.++|+ .|..+....|. +..+.-+|-.++-.|..
T Consensus 98 ~el~~l~~~~~~~~Vk~kil~li~------~W~~~f~~~~~-l~~i~~~Y~~Lk~~G~~ 149 (163)
T 1x5b_A 98 TEVRAVIKNKAHPKVCEKLKSLMV------EWSEEFQKDPQ-FSLISATIKSMKEEGIT 149 (163)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHH------HHHHHTTTCST-THHHHHHHHHHHTTTCC
T ss_pred HHHHHHHccCCCHHHHHHHHHHHH------HHHHHhcCCcc-cHHHHHHHHHHHHcCCC
Confidence 455555554467899999999999 88888888875 44455555555555543
No 277
>3h9d_A ATG8, microtubule-associated protein 1A/1B, light chain putative; autophagy, lipidation, ubiquitin-like, S protein; 2.30A {Trypanosoma brucei} SCOP: d.15.1.0
Probab=31.88 E-value=50 Score=26.66 Aligned_cols=57 Identities=14% Similarity=0.182 Sum_probs=39.1
Q ss_pred EEeCCCCCHHHHHHHHHHHhCCCCcC-eEEecCCeecCCcccchhcC--CC-CCcEEEEee
Q 016931 15 LDVDPHETVENVKALLEVETQVPLQQ-QQLLYNGREMNNAEKLSALG--VK-DEDLVMMVS 71 (380)
Q Consensus 15 i~V~~~~TV~~LK~~I~~~~gip~~~-q~Li~~Gk~L~D~~tL~~~g--I~-dg~~I~l~~ 71 (380)
+-|+.+.||++|...|..+.++++++ .-|+.|+.....+.+++++- -+ ++..|+|.-
T Consensus 52 flVp~~~tv~qf~~~iRkrl~l~~~~alFl~Vn~~~p~~~~~m~~lY~~~kd~DGfLyv~Y 112 (119)
T 3h9d_A 52 FLVPSDLTVGQFVSVLRKRVQLEAESALFVYTNDTVLPSSAQMADIYSKYKDEDGFLYMKY 112 (119)
T ss_dssp EEEETTCBHHHHHHHHHHHHTCCTTSCCEEEETTEECCTTSBHHHHHHHHCCTTSCEEEEE
T ss_pred EEcCCCCCHHHHHHHHHHHhCCCccceEEEEECCcCCCccchHHHHHHHcCCCCCeEEEEE
Confidence 45788999999999999999999876 44545777555566665432 12 233566553
No 278
>3m95_A Autophagy related protein ATG8; alpha slash beta, receptor, transport protein; 2.40A {Bombyx mori} SCOP: d.15.1.3
Probab=29.25 E-value=57 Score=26.61 Aligned_cols=56 Identities=11% Similarity=0.066 Sum_probs=38.2
Q ss_pred EEeCCCCCHHHHHHHHHHHhCCCCcCe-EEecCCeecCCcccchhc----CCCCCcEEEEee
Q 016931 15 LDVDPHETVENVKALLEVETQVPLQQQ-QLLYNGREMNNAEKLSAL----GVKDEDLVMMVS 71 (380)
Q Consensus 15 i~V~~~~TV~~LK~~I~~~~gip~~~q-~Li~~Gk~L~D~~tL~~~----gI~dg~~I~l~~ 71 (380)
+-|+.+.||++|...|..+..+++++- -|+.++.....+.+++++ +=. +..|+|.-
T Consensus 57 flVp~~~tv~qf~~~IRkrl~L~~~~alFl~Vnn~lPs~s~~m~~lY~~~kde-DGfLY~~Y 117 (125)
T 3m95_A 57 YLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNVIPPTSATMGSLYQEHHDE-DFFLYIAF 117 (125)
T ss_dssp EEEETTSBHHHHHHHHHHHTTCCTTSCCEEEBTTBCCCTTSBHHHHHHHHCCT-TSCEEEEE
T ss_pred EEcCCCCEeeeehhhhHhhcCCCccccEEEEECCccCCccchHHHHHHHcCCC-CCeEEEEe
Confidence 457889999999999999999988774 444466544455666543 223 33556553
No 279
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=27.75 E-value=1.1e+02 Score=25.48 Aligned_cols=37 Identities=14% Similarity=0.220 Sum_probs=28.1
Q ss_pred hHHHHHHhhCCC-----ccHHHHHHHHHHHHhhcHHHHHHHHHhcCCc
Q 016931 147 QEEEMALLYADP-----FDVEAQKKIEAAIRQKGIDENWAAALEHNPE 189 (380)
Q Consensus 147 ~~~el~~l~~dP-----~~~E~Q~~I~E~Irq~~i~en~~~A~E~~Pe 189 (380)
--.+|..+..++ -+++.+.+|.++|+ .|..|+...|.
T Consensus 92 Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~------~W~~~f~~~p~ 133 (149)
T 3g2s_A 92 FLNELIKVVSPKYLGSRTSEKVKNKILELLY------SWTVGLPEEVK 133 (149)
T ss_dssp HHHHHHHHHCTTTTGGGSCHHHHHHHHHHHH------HHHHHCTTCHH
T ss_pred HHHHHHHHHcccccCCCCCHHHHHHHHHHHH------HHHHHhCCCch
Confidence 345577777654 46899999999999 88888777665
No 280
>3r8s_T 50S ribosomal protein L23; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3fik_T 3j19_T 2wwq_T 3oat_T* 3oas_T* 3ofd_T 3ofc_T 3ofr_T* 3ofz_T* 3og0_T 3ofq_T 3r8t_T 2j28_T 3e1b_M 3e1d_M 3iy9_T 3i1n_T 1p85_R 1p86_R 1vs8_T ...
Probab=27.55 E-value=1.2e+02 Score=23.35 Aligned_cols=40 Identities=23% Similarity=0.297 Sum_probs=34.1
Q ss_pred CCEEEEEeCCCCCHHHHHHHHHHHhCCCCcCeE-EecCCee
Q 016931 10 EQIISLDVDPHETVENVKALLEVETQVPLQQQQ-LLYNGRE 49 (380)
Q Consensus 10 g~~~~i~V~~~~TV~~LK~~I~~~~gip~~~q~-Li~~Gk~ 49 (380)
.+.+.+.|+++++=.++|+.|+..+++.+..-. +...|+.
T Consensus 27 ~n~~~F~V~~~AnK~eIK~AVE~lf~VkV~~VnT~~~~gK~ 67 (93)
T 3r8s_T 27 SNTIVLKVAKDATKAEIKAAVQKLFEVEVEVVNTLVVKGKV 67 (93)
T ss_dssp TSEEEEEECSSCCHHHHHHHHHHHSCCCCCEEEEEEECCCB
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHcCCceEEEEEEEeCCce
Confidence 367999999999999999999999999997754 5567764
No 281
>1b5f_B Protein (cardosin A); hydrolase, aspartic proteinase; HET: NAG FUC BMA MAN; 1.72A {Cynara cardunculus} SCOP: b.50.1.2
Probab=27.13 E-value=40 Score=24.85 Aligned_cols=27 Identities=11% Similarity=0.233 Sum_probs=24.3
Q ss_pred CceeeeHHHHhhcCeEEEcCCCEEEEc
Q 016931 279 MEFLFGLDMLRKHQCIIDLKENVLRVG 305 (380)
Q Consensus 279 ~d~iLG~D~L~~~~~~ID~~~~~l~i~ 305 (380)
...|||-.||+++-.+.|+.++++-|.
T Consensus 58 ~~~ILGd~Fl~~~y~vfD~~~~riGfA 84 (87)
T 1b5f_B 58 PLWILGDVFMRPYHTVFDYGNLLVGFA 84 (87)
T ss_dssp BEEEECHHHHTTEEEEEETTTTEEEEE
T ss_pred CeEEechHHhccEEEEEECCCCEEEEE
Confidence 457999999999999999999998875
No 282
>3au4_A Myosin-X; protein-protein complex, motor protein cargo transportation, protein-apoptosis complex; 1.90A {Homo sapiens} PDB: 3au5_A 3pzd_A
Probab=26.70 E-value=72 Score=32.18 Aligned_cols=44 Identities=16% Similarity=0.070 Sum_probs=37.8
Q ss_pred EEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCCC--cCeEEec
Q 016931 2 RITVMTADEQIISLDVDPHETVENVKALLEVETQVPL--QQQQLLY 45 (380)
Q Consensus 2 ~ItVk~~~g~~~~i~V~~~~TV~~LK~~I~~~~gip~--~~q~Li~ 45 (380)
.+.|..++|....+.+++.+|+.+|-..|..+.|+.. +..-|++
T Consensus 218 ~~~V~l~dg~~~~~~v~~~tt~~el~~~v~~~lgL~e~~~~FgL~~ 263 (555)
T 3au4_A 218 TSTVYCHGGGSCKITINSHTTAGEVVEKLIRGLAMEDSRNMFALFE 263 (555)
T ss_dssp EEEEEETTSCEEEEEECTTCBHHHHHHHHHHHTTCTTCCSEEEEEE
T ss_pred ceEEEecCCCeEEEEeCCCCcHHHHHHHHHHHcCCCCCCCceEEEE
Confidence 5788889999999999999999999999999999974 3455654
No 283
>3tuf_A Stage III sporulation protein AH; intercellular signalling, intercellular channel, sporulation engulfment and signalling, intercellular space; 2.26A {Bacillus subtilis} PDB: 3uz0_A
Probab=24.95 E-value=2.9e+02 Score=24.15 Aligned_cols=60 Identities=17% Similarity=0.157 Sum_probs=34.9
Q ss_pred HhhHHHHHHhhCCCcc-----HHHHHHHHHHH---HhhcHHHHHHHHHhcCCccccccceeEEeeeecCeeEEEEEcC
Q 016931 145 RRQEEEMALLYADPFD-----VEAQKKIEAAI---RQKGIDENWAAALEHNPEAFARVVMLYVDMEVNGIPLKAFVDS 214 (380)
Q Consensus 145 ~~~~~el~~l~~dP~~-----~E~Q~~I~E~I---rq~~i~en~~~A~E~~Pe~f~~~~~lyv~v~Ing~~v~alVDT 214 (380)
.+..+.|..+.+|+.. -+++.+|.++. .++..-||+-.|- ||.-+ =|.|.+..+.++|-+
T Consensus 97 sk~~E~L~eII~n~n~S~eeK~eA~~ql~eLt~~~ekE~~IE~LLKAK-----GF~DA-----VV~i~dd~V~VVVka 164 (197)
T 3tuf_A 97 SKEREELNAIVSSDDATAKEKSEAYDKMTALSEVEGTEKQLETLIKTQ-----GYEDA-----LVNAEGDKINITVKS 164 (197)
T ss_dssp HHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----TCSCE-----EEECSSSEEEEEEEC
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-----CCCce-----EEEecCCEEEEEEeC
Confidence 4456678888899864 33444544444 4444445555543 44311 244677788888875
No 284
>1pqs_A Cell division control protein 24; alpha and beta protein, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1tz1_A
Probab=24.89 E-value=62 Score=24.01 Aligned_cols=26 Identities=12% Similarity=0.135 Sum_probs=23.9
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHhCCC
Q 016931 12 IISLDVDPHETVENVKALLEVETQVP 37 (380)
Q Consensus 12 ~~~i~V~~~~TV~~LK~~I~~~~gip 37 (380)
.+.|-|+++.+..+|..+|..+++..
T Consensus 3 ~~~i~V~~~i~f~~L~~kI~~kl~~~ 28 (77)
T 1pqs_A 3 IFTLLVEKVWNFDDLIMAINSKISNT 28 (77)
T ss_dssp EEEEECTTCCCSHHHHHHHHHHTTTT
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHccc
Confidence 67899999999999999999999874
No 285
>1j0g_A Hypothetical protein 1810045K17; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.6 PDB: 1wxs_A 1l7y_A
Probab=23.90 E-value=1.7e+02 Score=21.93 Aligned_cols=60 Identities=17% Similarity=0.216 Sum_probs=49.7
Q ss_pred EEEEeCCCCCHHHHHHHHHHHhCCCCcCeEEec-CCeecCCcccchhcCCCCCcEEEEeec
Q 016931 13 ISLDVDPHETVENVKALLEVETQVPLQQQQLLY-NGREMNNAEKLSALGVKDEDLVMMVSN 72 (380)
Q Consensus 13 ~~i~V~~~~TV~~LK~~I~~~~gip~~~q~Li~-~Gk~L~D~~tL~~~gI~dg~~I~l~~~ 72 (380)
..+.|.......-+-+..++++.+|+..--++- +|--+....|-+..-+|.|+.+.|+.+
T Consensus 26 kvlsVPE~~PftAVlkfaaEeF~vp~~TsAiiT~dGiGInP~QtAGnvFlKhGseLrlIPR 86 (92)
T 1j0g_A 26 KVLSVPESTPFTAVLKFAAEEFKVPAATSAIITNDGIGINPAQTAGNVFLKHGSELRIIPR 86 (92)
T ss_dssp EEEEEETTSBHHHHHHHHHHHTTCCSSSEEEECTTSCCCCCSSBHHHHHHHTCSEEEEEEC
T ss_pred eEEecCccCchHHHHHHHHHHcCCCccceEEEecCCcccChhhccchhhhhcCceeEeccc
Confidence 457888888899999999999999998877775 465567778888888899999998854
No 286
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=23.55 E-value=35 Score=28.13 Aligned_cols=36 Identities=11% Similarity=0.385 Sum_probs=25.8
Q ss_pred ccHHHHHHHHHHHHhhcHHHHHHHHHhcCCccccccceeEEee
Q 016931 159 FDVEAQKKIEAAIRQKGIDENWAAALEHNPEAFARVVMLYVDM 201 (380)
Q Consensus 159 ~~~E~Q~~I~E~Irq~~i~en~~~A~E~~Pe~f~~~~~lyv~v 201 (380)
-+++.+++|.++|. .|..|....|+ +..+..+|-.+
T Consensus 97 ~~~~Vk~kil~li~------~W~~~f~~~~~-l~~i~~~Y~~L 132 (140)
T 3ldz_A 97 GHPKVCEKLKALMV------EWTDEFKNDPQ-LSLISAMIKNL 132 (140)
T ss_dssp SCHHHHHHHHHHHH------HHHHHHTTCGG-GTHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH------HHHHHhCCCCC-chHHHHHHHHH
Confidence 36799999999999 88888888776 33344444333
No 287
>1v8c_A MOAD related protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, protein binding; 1.60A {Thermus thermophilus} SCOP: d.15.3.1 d.129.5.1
Probab=23.33 E-value=1.7e+02 Score=24.73 Aligned_cols=56 Identities=13% Similarity=0.158 Sum_probs=37.1
Q ss_pred EEEeCCCCCHHHHHHHHHHHhC-CC---------CcCeEEecCCeecCCcccchhcCCCCCcEEEEee
Q 016931 14 SLDVDPHETVENVKALLEVETQ-VP---------LQQQQLLYNGREMNNAEKLSALGVKDEDLVMMVS 71 (380)
Q Consensus 14 ~i~V~~~~TV~~LK~~I~~~~g-ip---------~~~q~Li~~Gk~L~D~~tL~~~gI~dg~~I~l~~ 71 (380)
.++++. .||.+|.+.+..... +. .....+..||+......- .+.-+++||.|.++.
T Consensus 17 ~~ev~~-~TV~dLl~~L~~~~p~l~~~l~~~~~l~~~v~VaVNg~~v~~~~~-~dt~L~dGDeVai~P 82 (168)
T 1v8c_A 17 QLELPG-ATVGEVLENLVRAYPALKEELFEGEGLAERVSVFLEGRDVRYLQG-LSTPLSPGATLDLFP 82 (168)
T ss_dssp EEECCC-SBHHHHHHHHHHHCGGGHHHHEETTEECTTCEEEETTEEGGGTTG-GGCBCCTTCEEEEEC
T ss_pred eEEECC-CcHHHHHHHHHhhChhhhhhhhcccccCCcEEEEECCEECCCcCC-CccCCCCCCEEEEEC
Confidence 456665 899999999987742 10 123345678887654322 244689999999974
No 288
>2r2q_A Gamma-aminobutyric acid receptor-associated protein-like 1; autophagy, ubiquitin homolog, structural genomics consortium, SGC, microtubule; 1.65A {Homo sapiens} PDB: 2l8j_A 1kjt_A 1kot_A 3d32_A 3dow_A 1gnu_A 1klv_A 1km7_A
Probab=22.91 E-value=1.2e+02 Score=23.85 Aligned_cols=45 Identities=13% Similarity=0.096 Sum_probs=33.0
Q ss_pred EEeCCCCCHHHHHHHHHHHhCCCCcCe-EEecCCeecCCcccchhc
Q 016931 15 LDVDPHETVENVKALLEVETQVPLQQQ-QLLYNGREMNNAEKLSAL 59 (380)
Q Consensus 15 i~V~~~~TV~~LK~~I~~~~gip~~~q-~Li~~Gk~L~D~~tL~~~ 59 (380)
+-|+.+.||++|...|..+.++++++- -|+.++.....+.+++++
T Consensus 48 flVp~~~tv~~~~~~iRk~l~l~~~~alfl~vn~~~p~~~~~m~~L 93 (110)
T 2r2q_A 48 YLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNTIPPTSATMGQL 93 (110)
T ss_dssp EEEETTCBHHHHHHHHHHHTTCCTTSCCEEEBTTBCCCTTSBHHHH
T ss_pred EEeCCCCcHHHHHHHHHHHhcCCCCCcEEEEECCEecCccChHHHH
Confidence 457778999999999999999988764 444466544455666554
No 289
>2dhz_A RAP guanine nucleotide exchange factor (GEF)- like 1; LINK guanine nucleotide exchange factor II, LINK-gefii, RA domain, structural genomics; NMR {Homo sapiens}
Probab=22.83 E-value=2.2e+02 Score=22.96 Aligned_cols=64 Identities=14% Similarity=0.266 Sum_probs=44.5
Q ss_pred eCCCCEEEEEeCCCCCHHHHHHHHHHHhCCCCc------CeEEe---cCCe--ecCCcc--cchhcCCCCCcEEEEeec
Q 016931 7 TADEQIISLDVDPHETVENVKALLEVETQVPLQ------QQQLL---YNGR--EMNNAE--KLSALGVKDEDLVMMVSN 72 (380)
Q Consensus 7 ~~~g~~~~i~V~~~~TV~~LK~~I~~~~gip~~------~q~Li---~~Gk--~L~D~~--tL~~~gI~dg~~I~l~~~ 72 (380)
..+..-+++.+..+.|+.+++..++.+.+...+ .+.|. ++|. +|++++ -...+++ ...|++-.+
T Consensus 16 ~~Dhsy~tvr~~v~~sa~eIl~~va~kl~~~e~~~~~~~~l~Lv~V~ssGEk~vlqp~d~sv~tsL~~--NgRLfvc~k 92 (120)
T 2dhz_A 16 MPDHSYVTIRSRLSASVQDILGSVTEKLQYSEEPAGREDSLILVAVSSSGEKVLLQPTEDCVFTALGI--NSHLFACTR 92 (120)
T ss_dssp CTTSCCCCEEECTTCCHHHHHHHHHHHSTTCSSTTSCCSCCEEEEEETTCCCEECCTTCSCHHHHSCS--SEEEEEECT
T ss_pred eccCceEEEEEeccccHHHHHHHHHHHhccccccccccCceEEEEEccCCcEeecCCcceEEEeeccc--cceEEEeeh
Confidence 334455678889999999999999999987654 67776 6773 356543 3445554 566777654
No 290
>3rui_B Autophagy-related protein 8; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} SCOP: d.15.1.3 PDB: 2kq7_A 2zpn_A 3vxw_A 2kwc_A 2li5_A 3vh3_B 3vh4_B*
Probab=22.68 E-value=85 Score=25.22 Aligned_cols=44 Identities=18% Similarity=0.136 Sum_probs=32.5
Q ss_pred EEeCCCCCHHHHHHHHHHHhCCCCcCe-EEecCCeecCCcccchh
Q 016931 15 LDVDPHETVENVKALLEVETQVPLQQQ-QLLYNGREMNNAEKLSA 58 (380)
Q Consensus 15 i~V~~~~TV~~LK~~I~~~~gip~~~q-~Li~~Gk~L~D~~tL~~ 58 (380)
+-|+.+.||++|...|..+..+++++- -|+.|+.....+.++++
T Consensus 51 flVp~~~tv~qf~~~iRkrl~l~~~~alFl~Vn~~~p~~~~~m~~ 95 (118)
T 3rui_B 51 YLVPADLTVGQFVYVIRKRIMLPPEKAIFIFVNDTLPPTAALMSA 95 (118)
T ss_dssp EEEETTSBHHHHHHHHHHHTTCCTTCCEEEEBTTBCCCTTSBHHH
T ss_pred EEcCCCCCHHHHHHHHHHHhCcCCCccEEEEECCccCCccchHHH
Confidence 458899999999999999999988664 44446654445566554
No 291
>2llw_A Heat shock protein STI1; DP domain, alpha helix, chaperone; NMR {Saccharomyces cerevisiae}
Probab=22.08 E-value=1.3e+02 Score=21.90 Aligned_cols=53 Identities=26% Similarity=0.452 Sum_probs=32.7
Q ss_pred HHHHHHHhhcCHHHHHHhcCCCHHHHHHHHHHhHHHHHHHHHhhHH-HHHHhhCCCccHHHHHHHHHHHH
Q 016931 104 ANLMTQLFQSDPELAQVLLGNDLNKLQDLLRERSRQRSELRRRQEE-EMALLYADPFDVEAQKKIEAAIR 172 (380)
Q Consensus 104 P~~l~qL~~~nP~La~ai~~~d~~~~~~~l~~~~~q~~~~~~~~~~-el~~l~~dP~~~E~Q~~I~E~Ir 172 (380)
++.+..++ ++|+++.++ .|| .+..++... .+|| .+..+++|| +...+|+.++.
T Consensus 10 ee~~~~~m-~dPEi~~im--~DP-~~~~~lq~~---------~~NP~~~~k~~~nP---~v~~~i~kl~~ 63 (71)
T 2llw_A 10 EETYQRAM-KDPEVAAIM--QDP-VMQSILQQA---------QQNPAALQEHMKNP---EVFKKIQTLIA 63 (71)
T ss_dssp HHHHHHHH-HSHHHHHHH--TCT-HHHHHHHHH---------HHCHHHHHHHHHSH---HHHHHHHHHHH
T ss_pred HHHHHHHh-cCHHHHHHh--CCH-HHHHHHHHH---------HHCHHHHHHHHhCH---HHHHHHHHHHH
Confidence 55677776 499999999 677 344444332 3444 344555665 66666666654
No 292
>2nvu_B Maltose binding protein/NEDD8-activating enzyme E1 catalytic subunit chimera; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: c.111.1.2 c.94.1.1
Probab=21.68 E-value=1.2e+02 Score=32.11 Aligned_cols=60 Identities=15% Similarity=0.253 Sum_probs=41.8
Q ss_pred EEEEeCCCCCHHHHHHHHHHHhC--CCCcC--------eEEecCCe--e----cCC--cccchhcCCCCCcEEEEeec
Q 016931 13 ISLDVDPHETVENVKALLEVETQ--VPLQQ--------QQLLYNGR--E----MNN--AEKLSALGVKDEDLVMMVSN 72 (380)
Q Consensus 13 ~~i~V~~~~TV~~LK~~I~~~~g--ip~~~--------q~Li~~Gk--~----L~D--~~tL~~~gI~dg~~I~l~~~ 72 (380)
..+.++.+.|+.+|-+.+..+.. +..-. ..++|... . .++ +++|+++||++|+.|++...
T Consensus 714 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ly~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~ 791 (805)
T 2nvu_B 714 QNIQFSPSAKLQEVLDYLTNSASLQMKSPAITATLEGKNRTLYLQSVTSIEERTRPNLSKTLKELGLVDGQELAVADV 791 (805)
T ss_dssp EEEEECTTSBHHHHHHHHHHCTTTCCSSCEEEEEETTEEEEEECCSSHHHHHHHGGGGGSBTTTTTCCTTCEEEEECT
T ss_pred EEEEECCcChHHHHHHHHHhhhccCcccceEEEEccCCCcEEEecCccchhhhhHhhhcCCHHHcCCCCCCEEEEEcC
Confidence 56788888999999998888633 32211 34555432 1 122 57999999999999999864
No 293
>3pvl_A Myosin VIIA isoform 1; protein complex, novel folding, protein cargo binding, cargo proteins, motor protein-protein transport complex; 2.80A {Mus musculus}
Probab=21.55 E-value=98 Score=32.20 Aligned_cols=45 Identities=16% Similarity=0.064 Sum_probs=38.0
Q ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCCC-cCeEEec
Q 016931 1 MRITVMTADEQIISLDVDPHETVENVKALLEVETQVPL-QQQQLLY 45 (380)
Q Consensus 1 M~ItVk~~~g~~~~i~V~~~~TV~~LK~~I~~~~gip~-~~q~Li~ 45 (380)
|.+.|..++|....+.|++.+|+.+|-..|..+.|+.. +..-|.+
T Consensus 264 i~~~V~llDgt~~~~~vds~Tt~~ell~~V~~~LgL~e~~~FgL~~ 309 (655)
T 3pvl_A 264 IMLPVTFMDGTTKTLLTDSATTARELCNALADKISLKDRFGFSLYI 309 (655)
T ss_dssp EEEEEEETTSCEEEEEECTTCBHHHHHHHHHHHTTCSSCTTEEEEE
T ss_pred eEEEEEecCCceEEEEEccCCcHHHHHHHHHHHcCCcccccceeEE
Confidence 35788899999999999999999999999999999754 4455654
No 294
>2v1y_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit alpha isoform; cancer, SH2 domain, SH3 domain, transferase, oncogen mutations, HOST-virus interaction; 2.4A {Bos taurus}
Probab=21.53 E-value=1.1e+02 Score=24.16 Aligned_cols=65 Identities=12% Similarity=0.182 Sum_probs=40.5
Q ss_pred EEeCCCCEEEEEeCCCCCHHHHHHHHHHHhC--------CCCcCeEEe---cCCee--cCCc-ccchhcCCCCCcEEEEe
Q 016931 5 VMTADEQIISLDVDPHETVENVKALLEVETQ--------VPLQQQQLL---YNGRE--MNNA-EKLSALGVKDEDLVMMV 70 (380)
Q Consensus 5 Vk~~~g~~~~i~V~~~~TV~~LK~~I~~~~g--------ip~~~q~Li---~~Gk~--L~D~-~tL~~~gI~dg~~I~l~ 70 (380)
+=.++|-.+.++++.+.|+.++|..+-++.. -.++.-.+. .+|.. +.|+ +-|.+...- -..+.++
T Consensus 24 ~LlPnGi~i~l~~~~~~tl~eiK~~lw~eA~~~PL~~~L~d~~~Y~F~~in~~~e~Eel~DEsrrL~dv~pf-~piLklv 102 (108)
T 2v1y_A 24 CLLPNGMIVTLECLREATLITIKHELFKEARKYPLHQLLQDESSYIFVSVTQEAEREEFFDETRRLCDLRLF-QPFLKVI 102 (108)
T ss_dssp EECTTSCEEEEEEETTCBHHHHHHHHHHHGGGSTTGGGCCCGGGCEEEEEBTTSCEEEECCTTSBGGGSCBS-SSEEEEE
T ss_pred EEcCcEEEEEEEeeccccHHHHHHHHHHHHHhCchHHHhCCccceEEEEecCCceEEEeEcCceEEEecccc-ceEEEEE
Confidence 3345798999999999999999998887732 122222222 22332 5554 677777654 3344444
No 295
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=21.00 E-value=1.7e+02 Score=24.16 Aligned_cols=37 Identities=5% Similarity=0.133 Sum_probs=27.4
Q ss_pred hHHHHHHhhCC----C-ccHHHHHHHHHHHHhhcHHHHHHHHHhcCCc
Q 016931 147 QEEEMALLYAD----P-FDVEAQKKIEAAIRQKGIDENWAAALEHNPE 189 (380)
Q Consensus 147 ~~~el~~l~~d----P-~~~E~Q~~I~E~Irq~~i~en~~~A~E~~Pe 189 (380)
--.+|..+..+ + .+++.+++|.++|+ .|..|+...|.
T Consensus 82 Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~------~W~~~f~~~p~ 123 (148)
T 1mhq_A 82 FLNELIKVLSPKYLGSWATGKVKGRVIEILF------SWTVWFPEDIK 123 (148)
T ss_dssp HHHHHHHTTCCSTTSCCCCHHHHHHHHHHHH------HHHHHCTTCHH
T ss_pred HHHHHHHHHccccCCCCCCHHHHHHHHHHHH------HHHHHcCCCch
Confidence 33456666653 2 47899999999999 88888777665
No 296
>3tve_T 50S ribosomal protein L23; RNA, ribosome, tRNA, translation, mRNA; 3.10A {Thermus thermophilus} PDB: 3pyr_T 3pyo_T 3pyv_T 3pyt_T 3tvh_T 1n88_A 1vsa_R 1vsp_R 2hgj_W 2hgq_W 2hgu_W 2j01_X 2j03_X 2jl6_X 2jl8_X 2v47_X 2v49_X 2wdi_X 2wdj_X 2wdl_X ...
Probab=20.84 E-value=1.6e+02 Score=22.53 Aligned_cols=40 Identities=23% Similarity=0.308 Sum_probs=33.8
Q ss_pred CCEEEEEeCCCCCHHHHHHHHHHHhCCCCcCeE-EecCCee
Q 016931 10 EQIISLDVDPHETVENVKALLEVETQVPLQQQQ-LLYNGRE 49 (380)
Q Consensus 10 g~~~~i~V~~~~TV~~LK~~I~~~~gip~~~q~-Li~~Gk~ 49 (380)
.+.+.+.|+..++=.++|+.|+..+++.+.... +...|+.
T Consensus 21 ~n~~~F~V~~~AnK~qIK~aVe~lf~VkV~~VnT~~~~gK~ 61 (92)
T 3tve_T 21 EGKYTFWVHPKATKTEIKNAVETAFKVKVVKVNTLHVRGKK 61 (92)
T ss_dssp TTEEEEEECTTCCHHHHHHHHHHHTTCCEEEEEEEEECCCE
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHhCCceeeeeeeeeCCce
Confidence 377999999999999999999999999987754 4566654
No 297
>1vq8_S 50S ribosomal protein L23P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.12.1.1 PDB: 1vq4_S* 1vq5_S* 1vq6_S* 1vq7_S* 1s72_S* 1vq9_S* 1vqk_S* 1vql_S* 1vqm_S* 1vqn_S* 1vqo_S* 1vqp_S* 1yhq_S* 1yi2_S* 1yij_S* 1yit_S* 1yj9_S* 1yjn_S* 1yjw_S* 2otj_S* ...
Probab=20.75 E-value=1.2e+02 Score=22.84 Aligned_cols=33 Identities=18% Similarity=0.279 Sum_probs=29.6
Q ss_pred CCEEEEEeCCCCCHHHHHHHHHHHhCCCCcCeE
Q 016931 10 EQIISLDVDPHETVENVKALLEVETQVPLQQQQ 42 (380)
Q Consensus 10 g~~~~i~V~~~~TV~~LK~~I~~~~gip~~~q~ 42 (380)
.+.+.+.|+++.+=.++|+.++..+++.+..-.
T Consensus 22 ~n~~~F~V~~~AnK~qIK~ave~lf~VkV~~VN 54 (85)
T 1vq8_S 22 QNKLQFAVDDRASKGEVADAVEEQYDVTVEQVN 54 (85)
T ss_dssp SCEEEEEECTTCCHHHHHHHHHHHHCCCEEEEE
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHhCCCceEEE
Confidence 467999999999999999999999999987654
No 298
>1eo6_A GATE-16, golgi-associated ATPase enhancer of 16 KD; ubiquitin fold, protein binding; 1.80A {Bos taurus} SCOP: d.15.1.3
Probab=20.44 E-value=1.4e+02 Score=23.80 Aligned_cols=58 Identities=14% Similarity=0.166 Sum_probs=38.7
Q ss_pred EEeCCCCCHHHHHHHHHHHhCCCCcCe-EEecCCeecCCcccchhcC--CC-CCcEEEEeec
Q 016931 15 LDVDPHETVENVKALLEVETQVPLQQQ-QLLYNGREMNNAEKLSALG--VK-DEDLVMMVSN 72 (380)
Q Consensus 15 i~V~~~~TV~~LK~~I~~~~gip~~~q-~Li~~Gk~L~D~~tL~~~g--I~-dg~~I~l~~~ 72 (380)
+-|+.+.||++|...|..+.++++++- -|+.++.....+.+++++- -+ ++..|+|.-.
T Consensus 49 flVp~~~tv~~f~~~iRk~l~l~~~~alfl~vn~~~p~~~~~m~~LY~~~kd~DGfLyi~Ys 110 (117)
T 1eo6_A 49 YLVPSDITVAQFMWIIRKRIQLPSEKAIFLFVDKTVPQSSLTMGQLYEKEKDEDGFLYVAYS 110 (117)
T ss_dssp EEEETTSBHHHHHHHHHHHHTCCTTSCCEEEBTTBCCCTTSBHHHHHHHHCCTTSCEEEEEE
T ss_pred EEcCCCCCHHHHHHhhHHhhcCCCCCcEEEEECCEecCccchHHHHHHHhCCCCCEEEEEEe
Confidence 457778999999999999999988764 4444665444556665542 12 2446666543
No 299
>3zqe_A Protein PRGI, cell invasion protein SIPD; cell invasion complex, type III secretion, T3 complex, HOST pathogen interaction; HET: DXC; 2.19A {Salmonella enterica subsp} PDB: 3zqb_A* 2kv7_A 2x9c_A 2lpz_A 2jow_A
Probab=20.32 E-value=3e+02 Score=25.73 Aligned_cols=38 Identities=16% Similarity=0.162 Sum_probs=30.7
Q ss_pred hhHHHHHHhhCCCccHHHHHHHHHHHHhhcHHHHHHHH
Q 016931 146 RQEEEMALLYADPFDVEAQKKIEAAIRQKGIDENWAAA 183 (380)
Q Consensus 146 ~~~~el~~l~~dP~~~E~Q~~I~E~Irq~~i~en~~~A 183 (380)
+-+.-+..|.+||.||+...+++.-|+|=.+=-|++.+
T Consensus 29 ~v~~ai~~l~~~~~np~~l~~~Q~~~~~~s~~~n~~s~ 66 (305)
T 3zqe_A 29 QVTEALDKLAAKPSDPALLAAYQSKLSEYNLYRNAQSN 66 (305)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhHHHH
Confidence 45667888999999999999999999887666666665
No 300
>2zjr_Q 50S ribosomal protein L23; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: d.12.1.1 PDB: 1sm1_R* 2aar_R 2d3o_R 2zjp_Q* 2zjq_Q 1nkw_R 3cf5_Q* 3dll_Q* 3pio_Q* 3pip_Q* 1nwy_R* 1nwx_R* 1xbp_R* 1pnu_R 1pny_R 1vor_U 1vou_U 1vow_U 1voy_U 1vp0_U
Probab=20.12 E-value=1.5e+02 Score=22.77 Aligned_cols=36 Identities=19% Similarity=0.218 Sum_probs=31.4
Q ss_pred EEEEeCCCCCHHHHHHHHHHHhCCCCcCeE-EecCCe
Q 016931 13 ISLDVDPHETVENVKALLEVETQVPLQQQQ-LLYNGR 48 (380)
Q Consensus 13 ~~i~V~~~~TV~~LK~~I~~~~gip~~~q~-Li~~Gk 48 (380)
+.+.|++++|=.++|+.|+..+++.+..-. +...||
T Consensus 25 y~F~V~~~anK~eIK~aVE~lf~VkV~~VNT~~~~gK 61 (95)
T 2zjr_Q 25 YSFWVSPKATKTEIKDAIQQAFGVRVIGISTMNVPGK 61 (95)
T ss_dssp CEEEECSSCTHHHHHHHHHHHHCCCCSEEEECCBCCC
T ss_pred EEEEEcCCCCHHHHHHHHHHHhCCCceEEEeEEeCCc
Confidence 899999999999999999999999997765 446665
Done!