Your job contains 1 sequence.
>016934
MLGGSSRISHHLRIRECNYHHYHQNQNLGLGFCSSRIFQLSSFMVRPLSAAIIGENRKQR
LQQRLVSSSSLQSKSPGEMPTLPSCFSEREDDRELPAEGFSPVAGGIVALGKFDALHIGH
RELAIQASKIGAPYLLSFIGMAEVFGWEPRAPIVAKCDRKRVLSSWAPYCGNVAPVEFQI
QFSSVRHLSPQQFVEKLSRELGVRGVVAGENYRFGYKAAGDASELVRLCEEYGMDACIIN
SVMDKHQDSRDIDCNDSKERGQVSSTRVRQALAMGDMKYVSELLGRQHRLILTVNDHDEL
ISTSNKHRVSVPKSCLLNLPPKEGFYGNSVLLFGEENPVKCRICIDASHIHLEMDKVGFC
NFDHSQDFKLLGIEFGDLQC
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 016934
(380 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2150813 - symbol:AT5G08340 species:3702 "Arabi... 1167 1.6e-118 1
TAIR|locus:2166973 - symbol:AT5G23330 species:3702 "Arabi... 1028 8.6e-104 1
TIGR_CMR|CBU_0391 - symbol:CBU_0391 "riboflavin biosynthe... 186 4.3e-12 1
TIGR_CMR|CHY_1762 - symbol:CHY_1762 "riboflavin biosynthe... 161 2.4e-09 1
UNIPROTKB|O33328 - symbol:ribF "Uncharacterized protein" ... 161 3.1e-09 1
TIGR_CMR|NSE_0040 - symbol:NSE_0040 "riboflavin biosynthe... 157 6.8e-09 1
UNIPROTKB|P0AG40 - symbol:ribF "bifunctional riboflavin k... 151 3.7e-08 1
TIGR_CMR|GSU_1487 - symbol:GSU_1487 "riboflavin biosynthe... 145 2.0e-07 1
TIGR_CMR|CPS_1181 - symbol:CPS_1181 "riboflavin biosynthe... 143 2.9e-07 1
TIGR_CMR|DET_0602 - symbol:DET_0602 "riboflavin biosynthe... 133 4.0e-06 1
TIGR_CMR|SPO_3154 - symbol:SPO_3154 "riboflavin biosynthe... 130 9.1e-06 1
TIGR_CMR|BA_3946 - symbol:BA_3946 "riboflavin biosynthesi... 126 2.8e-05 1
UNIPROTKB|Q9KU48 - symbol:VC_0681 "Riboflavin kinase/FMN ... 116 0.00038 1
TIGR_CMR|VC_0681 - symbol:VC_0681 "riboflavin kinase/FMN ... 116 0.00038 1
>TAIR|locus:2150813 [details] [associations]
symbol:AT5G08340 species:3702 "Arabidopsis thaliana"
[GO:0003919 "FMN adenylyltransferase activity" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0009231
"riboflavin biosynthetic process" evidence=IEA] InterPro:IPR015864
Pfam:PF06574 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0009507
Gene3D:3.40.50.620 InterPro:IPR014729 GO:GO:0009231 GO:GO:0003919
eggNOG:COG0196 EMBL:AY063929 EMBL:AY091253 EMBL:EU687458
IPI:IPI00537762 RefSeq:NP_568192.2 UniGene:At.27142
ProteinModelPortal:Q8VZR0 PaxDb:Q8VZR0 PRIDE:Q8VZR0
EnsemblPlants:AT5G08340.1 GeneID:830732 KEGG:ath:AT5G08340
TAIR:At5g08340 HOGENOM:HOG000077653 InParanoid:Q8VZR0 OMA:IHVETEE
PhylomeDB:Q8VZR0 ProtClustDB:CLSN2689853 ArrayExpress:Q8VZR0
Genevestigator:Q8VZR0 Uniprot:Q8VZR0
Length = 367
Score = 1167 (415.9 bits), Expect = 1.6e-118, P = 1.6e-118
Identities = 231/376 (61%), Positives = 278/376 (73%)
Query: 1 MLGGSSRISHHLRIRECNYHHYHQNQNLGLGFCSSRIFQLSSFMVRPLSAAIIGENXXXX 60
ML G SR+ HL + H++H + LGLGFC ++I QLSSF +RP A +
Sbjct: 1 MLCGGSRVLQHL-----SDHNHHNSIGLGLGFCGAKIVQLSSFFLRPSQAMAKSHHFSRK 55
Query: 61 XXXXXXXXXXXXXXXPGEMPTLPSCFSEREDDRELPAEGFSPVAGGIVALGKFDALHIGH 120
GE+P L +CFS+REDD ELP EG SPV+GGIVALGKFDALHIGH
Sbjct: 56 LRQRMISSFGSHCRTSGEVPILHNCFSQREDDPELPVEGLSPVSGGIVALGKFDALHIGH 115
Query: 121 RELAIQASKIGAPYLLSFIGMAEVFGWEPRAPIVAKCDRKRVLSSWAPYCGNVAPVEFQI 180
REL IQAS+IGAPYLLSF+GMAEV GWEPRAPIVAKCDR+RVL+SWA YCG+ AP E++I
Sbjct: 116 RELTIQASRIGAPYLLSFVGMAEVLGWEPRAPIVAKCDRQRVLTSWASYCGDRAPEEYEI 175
Query: 181 QFSSVRHLSPQQFVEKLSRELGVRGVVAGENYRFGYKAAGDASELVRLCEEYGMDACIIN 240
+F+SVRHL+P+QFVEKLS+EL V GVVAGENYRFGYKA+GDASELVRLCEE G+ ACIIN
Sbjct: 176 EFASVRHLTPRQFVEKLSKELRVCGVVAGENYRFGYKASGDASELVRLCEECGITACIIN 235
Query: 241 SVMDKHQDSRDIDCNDSKERGQVSSTRVRQALAMGDMKYVSELLGRQHRLILTVNDHDEL 300
SVMD Q S D DSK+RGQVSSTRVRQALA GDM+YVSELLGR HRLIL V D
Sbjct: 236 SVMDMKQGSAKRDSGDSKDRGQVSSTRVRQALAAGDMRYVSELLGRAHRLILRVRTQD-- 293
Query: 301 ISTSNKHRVSVPKSCLLNLPPKEGFYGNSVLLFGEENPVKCRICIDASHIHLEMDKVGFC 360
++ +SVP+S +LNLPP G Y +LL G+E+ V C + +D S+IH+E ++V C
Sbjct: 294 --MPSERMISVPRSSILNLPPGIGIYKACLLLVGDESSVPCTVVVDTSNIHVETEEVRLC 351
Query: 361 NFDHSQDFKLLGIEFG 376
N D SQ+F+L+ +EFG
Sbjct: 352 NLDWSQEFRLVSVEFG 367
>TAIR|locus:2166973 [details] [associations]
symbol:AT5G23330 species:3702 "Arabidopsis thaliana"
[GO:0003919 "FMN adenylyltransferase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM] [GO:0009231 "riboflavin
biosynthetic process" evidence=IEA] InterPro:IPR015864 Pfam:PF06574
EMBL:CP002688 GO:GO:0009507 Gene3D:3.40.50.620 InterPro:IPR014729
GO:GO:0009231 EMBL:AB007648 GO:GO:0003919 ProtClustDB:CLSN2689853
EMBL:EU687457 IPI:IPI00536575 RefSeq:NP_568429.1 UniGene:At.31016
UniGene:At.70593 ProteinModelPortal:Q9FMW8
EnsemblPlants:AT5G23330.1 GeneID:832397 KEGG:ath:AT5G23330
TAIR:At5g23330 InParanoid:Q9FMW8 OMA:YRASGDA PhylomeDB:Q9FMW8
Genevestigator:Q9FMW8 Uniprot:Q9FMW8
Length = 354
Score = 1028 (366.9 bits), Expect = 8.6e-104, P = 8.6e-104
Identities = 207/344 (60%), Positives = 259/344 (75%)
Query: 35 SRIFQLSSFMVRPLSAAIIGENXXXXXXXXXXXXXXXXXXXPGEMPTLPSCFSEREDDRE 94
+++ + SSFM+RP SA I + P ++P CFS+ +D E
Sbjct: 23 AKVLRKSSFMLRPCSA--ISQQRIKSSFRSHCKT-------PRKIPAPLDCFSQGDDHPE 73
Query: 95 LPAEGFSPVAGGIVALGKFDALHIGHRELAIQASKIGAPYLLSFIGMAEVFGWEPRAPIV 154
L AEG SPVAGGIVALGKFDALHIGHRELAIQA++IG PYLLSF+G+AEV GW+PRAPIV
Sbjct: 74 LSAEGLSPVAGGIVALGKFDALHIGHRELAIQAARIGTPYLLSFVGLAEVLGWKPRAPIV 133
Query: 155 AKCDRKRVLSSWAPYCGNVAPVEFQIQFSSVRHLSPQQFVEKLSRELGVRGVVAGENYRF 214
AKCDRKRVLSSWA YCGN+APVEF+I+F+SVRHL+PQQFVEKLSREL V GVVAGENYRF
Sbjct: 134 AKCDRKRVLSSWASYCGNIAPVEFEIEFASVRHLNPQQFVEKLSRELRVCGVVAGENYRF 193
Query: 215 GYKAAGDASELVRLCEEYGMDACIINSVMDKHQDSRDIDCNDSK--ERGQVSSTRVRQAL 272
GY+A+GDASELVRLC+++G+ A IINSVMDK+Q S + + DSK ERGQVSSTRVR AL
Sbjct: 194 GYRASGDASELVRLCKDFGISAYIINSVMDKNQVSVNTEEEDSKSKERGQVSSTRVRHAL 253
Query: 273 AMGDMKYVSELLGRQHRLILTVNDHDELISTSNKHRVSVPKSCLLNLPPKEGFYGNSVLL 332
A GD++YV+ELLGR HR+I D TS + R+S+ S LLNLPP G Y L+
Sbjct: 254 AAGDVRYVTELLGRPHRVISRTRTQD---LTSKRGRISLQTSSLLNLPPGNGVYKACSLI 310
Query: 333 FGEENPVKCRICIDASHIHLEMDKVGFCNFDHSQDFKLLGIEFG 376
G+++P+ C++ +D S++++E ++ F N D SQ+F+LLGIEFG
Sbjct: 311 VGDKHPISCKVIVDTSNLYIETEEERFHNSDESQEFQLLGIEFG 354
>TIGR_CMR|CBU_0391 [details] [associations]
symbol:CBU_0391 "riboflavin biosynthesis protein RibF"
species:227377 "Coxiella burnetii RSA 493" [GO:0003919 "FMN
adenylyltransferase activity" evidence=ISS] [GO:0006747 "FAD
biosynthetic process" evidence=ISS] [GO:0008531 "riboflavin kinase
activity" evidence=ISS] [GO:0009231 "riboflavin biosynthetic
process" evidence=ISS] [GO:0009398 "FMN biosynthetic process"
evidence=ISS] InterPro:IPR002606 InterPro:IPR004821
InterPro:IPR015864 InterPro:IPR015865 InterPro:IPR023465
Pfam:PF01687 Pfam:PF06574 PIRSF:PIRSF004491 SMART:SM00904
EMBL:AE016828 GenomeReviews:AE016828_GR Gene3D:3.40.50.620
InterPro:IPR014729 GO:GO:0009231 TIGRFAMs:TIGR00125 GO:GO:0003919
HOGENOM:HOG000006845 KO:K11753 OMA:FHFGRGR GO:GO:0008531
Gene3D:2.40.30.30 InterPro:IPR023468 PANTHER:PTHR22749
SUPFAM:SSF82114 TIGRFAMs:TIGR00083 RefSeq:NP_819430.2
GeneID:1208274 KEGG:cbu:CBU_0391 PATRIC:17929479
ProtClustDB:CLSK914038 BioCyc:CBUR227377:GJ7S-394-MONOMER
Uniprot:Q83ED4
Length = 345
Score = 186 (70.5 bits), Expect = 4.3e-12, P = 4.3e-12
Identities = 61/195 (31%), Positives = 94/195 (48%)
Query: 101 SPVAGGIVALGKFDALHIGHRELAIQASKIGAPYLLSFIGMAEVFGWEPRAPIVAKCDRK 160
+P+ G + LG FD LH+GH+ L ++ L + + +F +P+
Sbjct: 37 TPLNGCVATLGNFDGLHLGHQALLKTLKQLARELKLPTVVI--IFEPQPKEFFAKGQTEA 94
Query: 161 RVL---SSWAPYCGNVAPVEFQIQFS-SVRHLSPQQFVEK-LSRELGVRGVVAGENYRFG 215
R++ W + ++F ++ L+ + FV++ L LG + VV G++ RFG
Sbjct: 95 RLMRFREKWLGFAEWKIDYLLCLRFDRALADLAAEDFVKQILVDRLGAKAVVVGDDCRFG 154
Query: 216 YKAAGDASELVRLCEEYGMDACIINSVMDKHQDSRDIDCNDSKERGQVSSTRVRQALAMG 275
K AGD + L +L EEY A + SV+ Q +VSSTRVRQAL G
Sbjct: 155 AKRAGDYALLKQLGEEYNFKAIEMPSVIYDGQ--------------RVSSTRVRQALQAG 200
Query: 276 DMKYVSELLGRQHRL 290
DM + LLGR +RL
Sbjct: 201 DMAVMQALLGRPYRL 215
>TIGR_CMR|CHY_1762 [details] [associations]
symbol:CHY_1762 "riboflavin biosynthesis protein RibF"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0003919 "FMN adenylyltransferase activity" evidence=ISS]
[GO:0006747 "FAD biosynthetic process" evidence=ISS] [GO:0008531
"riboflavin kinase activity" evidence=ISS] [GO:0009231 "riboflavin
biosynthetic process" evidence=ISS] [GO:0009398 "FMN biosynthetic
process" evidence=ISS] InterPro:IPR002606 InterPro:IPR015864
InterPro:IPR015865 InterPro:IPR023465 Pfam:PF01687 Pfam:PF06574
PIRSF:PIRSF004491 SMART:SM00904 EMBL:CP000141
GenomeReviews:CP000141_GR Gene3D:3.40.50.620 InterPro:IPR014729
GO:GO:0009231 GO:GO:0003919 eggNOG:COG0196 KO:K11753 OMA:FHFGRGR
GO:GO:0008531 Gene3D:2.40.30.30 InterPro:IPR023468
PANTHER:PTHR22749 SUPFAM:SSF82114 TIGRFAMs:TIGR00083
HOGENOM:HOG000006844 RefSeq:YP_360582.1 STRING:Q3ABA2
GeneID:3727410 KEGG:chy:CHY_1762 PATRIC:21276637
BioCyc:CHYD246194:GJCN-1761-MONOMER Uniprot:Q3ABA2
Length = 307
Score = 161 (61.7 bits), Expect = 2.4e-09, P = 2.4e-09
Identities = 69/240 (28%), Positives = 112/240 (46%)
Query: 107 IVALGKFDALHIGHRELAIQ----ASKIGA-PYLLSFIGMA-EVFGWEPRAPIVAKCDRK 160
++ALG FD +H+GH++L A KIGA P + +F EV + + + D +
Sbjct: 17 VLALGNFDGVHLGHQKLLRVTRDLAGKIGACPGVYTFWPHPLEVLQGK-QVKYILPLDER 75
Query: 161 RVLSSWAPYCGNVAPVEFQI--QFS-SVRHLSPQQFVEKLSRELGVRGVVAGENYRFGYK 217
L +A +EF + F+ LSP +F+ L + GVVAG NY FG+
Sbjct: 76 --LKRFA-----AEELEFTVLESFTPEYARLSPGEFINMLLENFNLAGVVAGFNYTFGHL 128
Query: 218 AAGDASELVRLCEEYGMDACIINSVMDKHQDSRDIDCNDSKERGQVSSTRVRQALAMGDM 277
AG ++L++ E +G ++ V +++ VSST +R+ LA GD+
Sbjct: 129 GAGRVTDLIKAGERFGFKVEVVEPVTF----GQEV----------VSSTAIREKLAAGDI 174
Query: 278 KYVSELLGRQHRLILTVNDHDELISTSNKHRVSV-PKSCLLNLPPKEGFYGNSVLLFGEE 336
V+ +LG + L V D+L ++ P+ L+ P+ G Y V + GEE
Sbjct: 175 AKVNGMLGYTYFLKGKVIGGDKLARKIGFPTANILPEENLVL--PQYGVYRVDVEITGEE 232
>UNIPROTKB|O33328 [details] [associations]
symbol:ribF "Uncharacterized protein" species:1773
"Mycobacterium tuberculosis" [GO:0040007 "growth" evidence=IMP]
InterPro:IPR002606 InterPro:IPR015864 InterPro:IPR015865
InterPro:IPR023465 Pfam:PF01687 Pfam:PF06574 PIRSF:PIRSF004491
SMART:SM00904 GO:GO:0040007 EMBL:AE000516 GenomeReviews:AE000516_GR
GenomeReviews:AL123456_GR EMBL:BX842580 Gene3D:3.40.50.620
InterPro:IPR014729 GO:GO:0009231 GO:GO:0003919 KO:K11753
OMA:FHFGRGR ProtClustDB:PRK05627 GO:GO:0008531 Gene3D:2.40.30.30
InterPro:IPR023468 PANTHER:PTHR22749 SUPFAM:SSF82114
TIGRFAMs:TIGR00083 HSSP:O74866 EMBL:AL123456 PIR:A70884
RefSeq:NP_217302.1 RefSeq:NP_337361.1 RefSeq:YP_006516232.1
SMR:O33328 EnsemblBacteria:EBMYCT00000000308
EnsemblBacteria:EBMYCT00000070824 GeneID:13317571 GeneID:888468
GeneID:925426 KEGG:mtc:MT2856 KEGG:mtu:Rv2786c KEGG:mtv:RVBD_2786c
PATRIC:18128034 TubercuList:Rv2786c HOGENOM:HOG000006844
Uniprot:O33328
Length = 331
Score = 161 (61.7 bits), Expect = 3.1e-09, P = 3.1e-09
Identities = 61/192 (31%), Positives = 87/192 (45%)
Query: 107 IVALGKFDALHIGHREL---AIQASKI-GAP-YLLSFIG--MAEVFGWEPRAPIVAKCDR 159
++ +G FD +H GH EL A++A + G P L++F M V+ A + R
Sbjct: 25 VLTIGVFDGVHRGHAELIAHAVKAGRARGVPAVLMTFDPHPMEVVYPGSHPAQLTTLTRR 84
Query: 160 KRVLSSWAPYCGNVAPVEFQIQFSSVRHLSPQQFVEKLSRE-LGVRGVVAGENYRFGYKA 218
++ V P F F L+P +F+ +L E L V VV GEN+ FG KA
Sbjct: 85 AELVQDLGIEVFLVMP--FTTDFMK---LTPDRFIHELLVEHLHVVEVVVGENFTFGKKA 139
Query: 219 AGDASELVRLCEEYGMDACIINSVMDKHQDSRDIDCNDSKERGQVSSTRVRQALAMGDMK 278
AG+ L R E +G ++ V + H S E SST +R + GDM
Sbjct: 140 AGNVDTLRRAGERFGFAVESMSLVSEHH----------SNETVTFSSTYIRSCVDAGDMV 189
Query: 279 YVSELLGRQHRL 290
E LGR HR+
Sbjct: 190 AAMEALGRPHRV 201
>TIGR_CMR|NSE_0040 [details] [associations]
symbol:NSE_0040 "riboflavin biosynthesis protein RibF"
species:222891 "Neorickettsia sennetsu str. Miyayama" [GO:0003919
"FMN adenylyltransferase activity" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0006747 "FAD biosynthetic process"
evidence=ISS] [GO:0008531 "riboflavin kinase activity"
evidence=ISS] [GO:0009231 "riboflavin biosynthetic process"
evidence=ISS] [GO:0009398 "FMN biosynthetic process" evidence=ISS]
InterPro:IPR002606 InterPro:IPR015864 InterPro:IPR015865
InterPro:IPR023465 Pfam:PF01687 Pfam:PF06574 PIRSF:PIRSF004491
SMART:SM00904 Gene3D:3.40.50.620 InterPro:IPR014729 GO:GO:0009231
EMBL:CP000237 GenomeReviews:CP000237_GR GO:GO:0003919
eggNOG:COG0196 KO:K11753 GO:GO:0008531 Gene3D:2.40.30.30
InterPro:IPR023468 PANTHER:PTHR22749 SUPFAM:SSF82114
TIGRFAMs:TIGR00083 HOGENOM:HOG000006844 RefSeq:YP_505942.1
STRING:Q2GF14 GeneID:3931626 KEGG:nse:NSE_0040 PATRIC:22680191
OMA:IRDEQPF ProtClustDB:CLSK2528114
BioCyc:NSEN222891:GHFU-78-MONOMER Uniprot:Q2GF14
Length = 303
Score = 157 (60.3 bits), Expect = 6.8e-09, P = 6.8e-09
Identities = 66/237 (27%), Positives = 105/237 (44%)
Query: 107 IVALGKFDALHIGHRELAIQASKIGAPYLLSFIGMAEVFGWEPRAPIVAKCD-------R 159
+V G FD +H+GH LA+ ++ G L + F P + K D
Sbjct: 15 VVTFGNFDGVHLGH--LALLSALSGVSKLADLHRVVITFDPHPFCFLKRKKDFLITDQYT 72
Query: 160 KRVLSSWAPYCGNVAPVEFQIQFSSVRHLSPQQFVEKLSRELGVRGVVAGENYRFGYKAA 219
K VL S PY ++ ++F +R LSP+ F++ LS L ++ ++ EN RFG ++
Sbjct: 73 KTVLLS--PYADSLYFIKFD---DELRSLSPEDFLKFLSSFLNLKYLINAENCRFGKFSS 127
Query: 220 GDASELVRLCEEYGMDACIINSVMDKHQDSRDIDCNDSKERGQVSSTRVRQALAMGDMKY 279
G +E+ + E A +I + NDS R SST VR ++ GDM
Sbjct: 128 GGIAEIEKYQELLSYKAVVIKP-----------ELNDSGSR--YSSTLVRTSIKDGDMLS 174
Query: 280 VSELLGRQHRLILTVNDHDELISTSN--KHRVSVPKSCLLNLPPKEGFYGNSVLLFG 334
+LLGR H + + L ST +++P+ + P+ G Y V + G
Sbjct: 175 ARQLLGRYHSIRGIIRRDRGLASTIGFPTINIAIPEEII---KPRLGVYVVDVSIEG 228
>UNIPROTKB|P0AG40 [details] [associations]
symbol:ribF "bifunctional riboflavin kinase / FMN
adenylyltransferase" species:83333 "Escherichia coli K-12"
[GO:0009231 "riboflavin biosynthetic process" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0008531 "riboflavin kinase activity"
evidence=IEA;IGI] [GO:0003919 "FMN adenylyltransferase activity"
evidence=IEA;IGI] [GO:0009398 "FMN biosynthetic process"
evidence=IEA] [GO:0006747 "FAD biosynthetic process" evidence=IEA]
InterPro:IPR002606 InterPro:IPR015864 InterPro:IPR015865
InterPro:IPR023465 Pfam:PF01687 Pfam:PF06574 PIRSF:PIRSF004491
SMART:SM00904 UniPathway:UPA00276 UniPathway:UPA00277 GO:GO:0005524
EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR Gene3D:3.40.50.620 InterPro:IPR014729
GO:GO:0009231 GO:GO:0003919 GO:GO:0006747 EMBL:M10428 PIR:A64723
RefSeq:NP_414566.1 RefSeq:YP_488331.1 ProteinModelPortal:P0AG40
SMR:P0AG40 DIP:DIP-35789N IntAct:P0AG40 MINT:MINT-1256514
PRIDE:P0AG40 EnsemblBacteria:EBESCT00000003426
EnsemblBacteria:EBESCT00000016635 GeneID:12932854 GeneID:949129
KEGG:ecj:Y75_p0025 KEGG:eco:b0025 PATRIC:32115141 EchoBASE:EB1071
EcoGene:EG11079 eggNOG:COG0196 HOGENOM:HOG000006845 KO:K11753
OMA:FHFGRGR ProtClustDB:PRK05627 BioCyc:EcoCyc:RIBF-MONOMER
BioCyc:ECOL316407:JW0023-MONOMER BioCyc:MetaCyc:RIBF-MONOMER
Genevestigator:P0AG40 GO:GO:0008531 GO:GO:0009398 Gene3D:2.40.30.30
InterPro:IPR023468 PANTHER:PTHR22749 SUPFAM:SSF82114
TIGRFAMs:TIGR00083 Uniprot:P0AG40
Length = 313
Score = 151 (58.2 bits), Expect = 3.7e-08, P = 3.7e-08
Identities = 73/247 (29%), Positives = 107/247 (43%)
Query: 101 SPVAGGIVALGKFDALHIGHRELAIQASKIGAPYLLSFIGMAEVFGWEP-------RAPI 153
+P G ++ +G FD +H GHR L + G L + M +F +P +AP
Sbjct: 13 APQEGCVLTIGNFDGVHRGHRALLQGLQEEGRKRNLPVMVM--LFEPQPLELFATDKAP- 69
Query: 154 VAKCDRKRVLSSWAPYCG--NVAPVEFQIQFSSVRHLSPQQFV-EKLSRELGVRGVVAGE 210
A+ R R + CG V V F +F++ L+ Q F+ + L + L V+ + G+
Sbjct: 70 -ARLTRLREKLRYLAECGVDYVLCVRFDRRFAA---LTAQNFISDLLVKHLRVKFLAVGD 125
Query: 211 NYRFGYKAAGDASELVRLCEEYGMDACIINSVMDKHQDSRDIDCNDSKERG-QVSSTRVR 269
++RFG GD L + EYG D S C E G ++SST VR
Sbjct: 126 DFRFGAGREGDFLLLQKAGMEYGFDIT-----------STQTFC----EGGVRISSTAVR 170
Query: 270 QALAMGDMKYVSELLGRQHRLILTVNDHDELISTSNKHRVSVPKSCLLNLPPKEGFYGNS 329
QALA ++ LLG + V DEL T +VP + P +G Y
Sbjct: 171 QALADDNLALAESLLGHPFAISGRVVHGDELGRTIGFPTANVPLR--RQVSPVKGVYAVE 228
Query: 330 VLLFGEE 336
VL GE+
Sbjct: 229 VLGLGEK 235
>TIGR_CMR|GSU_1487 [details] [associations]
symbol:GSU_1487 "riboflavin biosynthesis protein RibF"
species:243231 "Geobacter sulfurreducens PCA" [GO:0003919 "FMN
adenylyltransferase activity" evidence=ISS] [GO:0006747 "FAD
biosynthetic process" evidence=ISS] [GO:0008531 "riboflavin kinase
activity" evidence=ISS] [GO:0009231 "riboflavin biosynthetic
process" evidence=ISS] [GO:0009398 "FMN biosynthetic process"
evidence=ISS] InterPro:IPR002606 InterPro:IPR015864
InterPro:IPR015865 InterPro:IPR023465 Pfam:PF01687 Pfam:PF06574
PIRSF:PIRSF004491 SMART:SM00904 EMBL:AE017180
GenomeReviews:AE017180_GR Gene3D:3.40.50.620 InterPro:IPR014729
GO:GO:0009231 GO:GO:0003919 KO:K11753 GO:GO:0008531
Gene3D:2.40.30.30 InterPro:IPR023468 PANTHER:PTHR22749
SUPFAM:SSF82114 TIGRFAMs:TIGR00083 HOGENOM:HOG000006844 OMA:IRDEQPF
RefSeq:NP_952538.1 ProteinModelPortal:Q74D32 GeneID:2687153
KEGG:gsu:GSU1487 PATRIC:22025821 ProtClustDB:CLSK828386
BioCyc:GSUL243231:GH27-1470-MONOMER Uniprot:Q74D32
Length = 322
Score = 145 (56.1 bits), Expect = 2.0e-07, P = 2.0e-07
Identities = 52/200 (26%), Positives = 97/200 (48%)
Query: 102 PVAGGIVALGKFDALHIGHREL----AIQASKI-GAPYLLSFIGMA-EVFGWEPRAPIVA 155
P+ +V +G FD +H+GHRE+ +A+++ G +++F +V G ++
Sbjct: 13 PLPSPVVTIGNFDGVHLGHREIFRRVKREAARLDGVSMVITFTPHPLKVLGLRKELRLIN 72
Query: 156 KCDRKRVLSSWAPYCGNVAPVEFQIQFSSVRHLSPQQFV-EKLSRELGVRGVVAGENYRF 214
K +L A + + F +F+++ ++FV E L +GV+ +V G +Y F
Sbjct: 73 TYAEKELLIE-ASGIDCLLTIPFTAEFAAI---GAERFVGEILVGRIGVKKLVIGYDYAF 128
Query: 215 GYKAAGDASELVRLCEEYGMDACIINSVMDKHQDSRDIDCNDSKERGQVSSTRVRQALAM 274
G GD + L R+ EE+G + ++ + S E SS+ VR+ +A
Sbjct: 129 GRNREGDVAMLRRMGEEHGFEVEVLEQIA-------------SGET-VYSSSAVRRMIAA 174
Query: 275 GDMKYVSELLGRQHRLILTV 294
G+++ V L+GR + + TV
Sbjct: 175 GNVREVVSLIGRHYSVGGTV 194
>TIGR_CMR|CPS_1181 [details] [associations]
symbol:CPS_1181 "riboflavin biosynthesis protein RibF"
species:167879 "Colwellia psychrerythraea 34H" [GO:0003919 "FMN
adenylyltransferase activity" evidence=ISS] [GO:0006747 "FAD
biosynthetic process" evidence=ISS] [GO:0008531 "riboflavin kinase
activity" evidence=ISS] [GO:0009231 "riboflavin biosynthetic
process" evidence=ISS] InterPro:IPR002606 InterPro:IPR015864
InterPro:IPR015865 InterPro:IPR023465 Pfam:PF01687 Pfam:PF06574
PIRSF:PIRSF004491 SMART:SM00904 EMBL:CP000083
GenomeReviews:CP000083_GR Gene3D:3.40.50.620 InterPro:IPR014729
GO:GO:0009231 GO:GO:0003919 eggNOG:COG0196 HOGENOM:HOG000006845
KO:K11753 OMA:FHFGRGR GO:GO:0008531 Gene3D:2.40.30.30
InterPro:IPR023468 PANTHER:PTHR22749 SUPFAM:SSF82114
TIGRFAMs:TIGR00083 RefSeq:YP_267924.1 ProteinModelPortal:Q486U1
STRING:Q486U1 GeneID:3518921 KEGG:cps:CPS_1181 PATRIC:21465611
BioCyc:CPSY167879:GI48-1262-MONOMER Uniprot:Q486U1
Length = 306
Score = 143 (55.4 bits), Expect = 2.9e-07, P = 2.9e-07
Identities = 51/193 (26%), Positives = 96/193 (49%)
Query: 107 IVALGKFDALHIGHRELAIQASKIGAPYLLSFIGMAEVFGWEPR---APIVAKCDRKRVL 163
++ +G FD +H+GH+++ I+A + L+ + VF +P+ +P A R+
Sbjct: 18 VLTIGNFDGVHLGHQQV-IKAL-VSKAKALNCVAAVLVFEPQPQELFSPETAPARLCRLR 75
Query: 164 SSW--APYCG--NVAPVEFQIQFSSVRHLSPQQFVEKLS-RELGVRGVVAGENYRFGYKA 218
+ G + V F +F++ S + F+E L +LG++ ++ G+++ FG
Sbjct: 76 DKYNLLAKLGVQRLICVNFTAKFANQ---SAKHFIENLLVAKLGIKHLIVGDDFHFGKNR 132
Query: 219 AGDASELVRLCEEYGMDACIINSVMDKHQDSRDIDCNDSKERGQVSSTRVRQALAMGDMK 278
G+ S L + E++G D V D + DC ++SST +RQAL D+
Sbjct: 133 TGNFSMLRQAGEKFGFD------VSDT-ASYKMADC-------RISSTAIRQALEQDDLV 178
Query: 279 YVSELLGRQHRLI 291
V ++LGR++ +I
Sbjct: 179 SVKQMLGREYSII 191
>TIGR_CMR|DET_0602 [details] [associations]
symbol:DET_0602 "riboflavin biosynthesis protein RibF"
species:243164 "Dehalococcoides ethenogenes 195" [GO:0003919 "FMN
adenylyltransferase activity" evidence=ISS] [GO:0006747 "FAD
biosynthetic process" evidence=ISS] [GO:0008531 "riboflavin kinase
activity" evidence=ISS] [GO:0009231 "riboflavin biosynthetic
process" evidence=ISS] [GO:0009398 "FMN biosynthetic process"
evidence=ISS] InterPro:IPR002606 InterPro:IPR015864
InterPro:IPR015865 InterPro:IPR023465 Pfam:PF01687 Pfam:PF06574
PIRSF:PIRSF004491 SMART:SM00904 EMBL:CP000027
GenomeReviews:CP000027_GR Gene3D:3.40.50.620 InterPro:IPR014729
GO:GO:0009231 GO:GO:0003919 eggNOG:COG0196 KO:K11753 OMA:FHFGRGR
GO:GO:0008531 Gene3D:2.40.30.30 InterPro:IPR023468
PANTHER:PTHR22749 SUPFAM:SSF82114 TIGRFAMs:TIGR00083
HOGENOM:HOG000006844 RefSeq:YP_181344.1 ProteinModelPortal:Q3Z8V5
STRING:Q3Z8V5 GeneID:3230061 KEGG:det:DET0602 PATRIC:21608275
ProtClustDB:CLSK837386 BioCyc:DETH243164:GJNF-603-MONOMER
Uniprot:Q3Z8V5
Length = 305
Score = 133 (51.9 bits), Expect = 4.0e-06, P = 4.0e-06
Identities = 74/285 (25%), Positives = 123/285 (43%)
Query: 107 IVALGKFDALHIGHR----ELAIQASKIGAPY-LLSFIGM-AEVFGWEPRAPIVAKCDRK 160
++ +G FD +H+GH+ EL QA + L++F ++V G + I++ +R
Sbjct: 18 LITIGVFDGVHLGHQHLINELKKQAKERNLQSCLITFKDHPSKVLGQDDIKLILSLEERN 77
Query: 161 RVLSSWAPYCGNVAPVEFQIQFSSVRHLSPQQFVEKLSRELGVRGVVAGENYRFGYKAAG 220
LS + + F + S+V S FV L L ++G+V G ++ G AG
Sbjct: 78 LALSQMG--LDQIIMLSFTPEISTV---SATDFVGYLLDHLHMKGIVVGSDFALGRNRAG 132
Query: 221 DASELVRLCEEYGMDACIINSVMDKHQDSRDIDCNDSKERGQVSSTRVRQALAMGDMKYV 280
DA+ L RL +++ V+ ++Q VSST +R+AL G++
Sbjct: 133 DATALRRLSHIMDFSVSVVSPVVIENQI--------------VSSTAIRRALLSGNVSKA 178
Query: 281 SELLGRQHRLILTV----NDHDEL-ISTSNKHRVSVPKSCLLNLPPKEGFYGNSVLLFGE 335
+LGR + + TV N +L T+N +++P L P +G Y L +
Sbjct: 179 RLMLGRNYHIRGTVQNGANRGTKLGFPTAN---LTLPGYLAL---PADGVYAAKAFLGEK 232
Query: 336 E-NPV----KCRICIDASHIHLEMDKVGFCNFDHSQDFKLLGIEF 375
E N V C H LE+ + F Q K+ +EF
Sbjct: 233 EYNAVANIGSCPTFGQEEH-RLEVHLLDFAGDIRGQVLKVEFVEF 276
>TIGR_CMR|SPO_3154 [details] [associations]
symbol:SPO_3154 "riboflavin biosynthesis protein RibF"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0003919 "FMN
adenylyltransferase activity" evidence=ISS] [GO:0006747 "FAD
biosynthetic process" evidence=ISS] [GO:0008531 "riboflavin kinase
activity" evidence=ISS] [GO:0009231 "riboflavin biosynthetic
process" evidence=ISS] [GO:0009398 "FMN biosynthetic process"
evidence=ISS] InterPro:IPR002606 InterPro:IPR004821
InterPro:IPR015864 InterPro:IPR015865 InterPro:IPR023465
Pfam:PF01687 Pfam:PF06574 PIRSF:PIRSF004491 SMART:SM00904
EMBL:CP000031 GenomeReviews:CP000031_GR Gene3D:3.40.50.620
InterPro:IPR014729 GO:GO:0009231 TIGRFAMs:TIGR00125 GO:GO:0003919
KO:K11753 OMA:FHFGRGR GO:GO:0008531 Gene3D:2.40.30.30
InterPro:IPR023468 PANTHER:PTHR22749 SUPFAM:SSF82114
TIGRFAMs:TIGR00083 HOGENOM:HOG000006844 RefSeq:YP_168357.1
ProteinModelPortal:Q5LNP9 GeneID:3195108 KEGG:sil:SPO3154
PATRIC:23379753 ProtClustDB:CLSK934072 Uniprot:Q5LNP9
Length = 310
Score = 130 (50.8 bits), Expect = 9.1e-06, P = 9.1e-06
Identities = 52/191 (27%), Positives = 94/191 (49%)
Query: 105 GGIVALGKFDALHIGHRELAIQASKIGAPYLLSFIGMAEVFGWEPRAPIVAKCDRKRVLS 164
G VA+G FD +HIGHR + I+ ++ AP + +G+ F PR R++
Sbjct: 16 GASVAIGNFDGVHIGHRSV-IELARQAAPDVP--LGVM-TFEPHPREYFAPDSPPFRLMR 71
Query: 165 SWA-PYCGNVAPVE--FQIQFSS-VRHLSPQQFVEKLSRE-LGVRGVVAGENYRFGYKAA 219
A + VE +++ F++ + L+P+ F + + LG++ VV G ++ FG +
Sbjct: 72 GPARAHRLEKLGVERLYELPFNAALAGLTPEGFARGVICDGLGLKHVVIGADFCFGKGRS 131
Query: 220 GDASELVRLCEEYGMDACIINSVMDKHQDSRDIDCNDSKERGQVSSTRVRQALAMGDMKY 279
G+A+++VR ++ G I + + ER +SST +R AL+ G +
Sbjct: 132 GNAADMVRFGQQMGFGVTIAPLL-------------EQTER-VISSTAIRTALSEGRPRD 177
Query: 280 VSELLGRQHRL 290
+ +LG HR+
Sbjct: 178 AAAMLGHWHRI 188
>TIGR_CMR|BA_3946 [details] [associations]
symbol:BA_3946 "riboflavin biosynthesis protein RibF"
species:198094 "Bacillus anthracis str. Ames" [GO:0008531
"riboflavin kinase activity" evidence=ISS] [GO:0009231 "riboflavin
biosynthetic process" evidence=ISS] [GO:0009398 "FMN biosynthetic
process" evidence=ISS] InterPro:IPR002606 InterPro:IPR004821
InterPro:IPR015864 InterPro:IPR015865 InterPro:IPR023465
Pfam:PF01687 Pfam:PF06574 PIRSF:PIRSF004491 SMART:SM00904
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR
Gene3D:3.40.50.620 InterPro:IPR014729 GO:GO:0009231
TIGRFAMs:TIGR00125 GO:GO:0003919 KO:K11753 OMA:FHFGRGR
ProtClustDB:PRK05627 GO:GO:0008531 Gene3D:2.40.30.30
InterPro:IPR023468 PANTHER:PTHR22749 SUPFAM:SSF82114
TIGRFAMs:TIGR00083 HSSP:O74866 HOGENOM:HOG000006844
RefSeq:NP_846190.1 RefSeq:YP_020585.1 RefSeq:YP_029911.1
ProteinModelPortal:Q81WM6 DNASU:1086886
EnsemblBacteria:EBBACT00000013055 EnsemblBacteria:EBBACT00000013731
EnsemblBacteria:EBBACT00000020980 GeneID:1086886 GeneID:2815285
GeneID:2852224 KEGG:ban:BA_3946 KEGG:bar:GBAA_3946 KEGG:bat:BAS3660
BioCyc:BANT260799:GJAJ-3718-MONOMER
BioCyc:BANT261594:GJ7F-3834-MONOMER Uniprot:Q81WM6
Length = 323
Score = 126 (49.4 bits), Expect = 2.8e-05, P = 2.8e-05
Identities = 66/245 (26%), Positives = 108/245 (44%)
Query: 107 IVALGKFDALHIGHRELAIQASKIGAP--Y---LLSFIGMAEV-FGW-EPRAP-IVAKCD 158
++ALG FD +H+GH+ + A +I Y +++F V G E A I CD
Sbjct: 21 VMALGFFDGIHLGHQCVIRTAKQIADEKGYKSAVMTFYPHPSVVLGKKEAHAEYITPMCD 80
Query: 159 RKRVLSSWAPYCGNVAPVEFQIQFSSVRHLSPQQFVEKLSRELGVRGVVAGENYRFGYKA 218
+++++ S + V+F F+ L PQQFV+ L V+ VVAG +Y +G
Sbjct: 81 KEKIVESLG--IDILYVVKFDESFAG---LLPQQFVDDYIIGLNVKHVVAGFDYSYGRLG 135
Query: 219 AGDASELVRLCEEYGMDACIINSVMDKHQDSRDIDCNDSKERGQVSSTRVRQALAMGDMK 278
G L + +V++K ++ + K VSST +R+ + G+M+
Sbjct: 136 KGKMETL-----PFHARGEFTQTVIEK------VEFQEEK----VSSTALRKLIRNGEME 180
Query: 279 YVSELLGRQHRLILTVNDHDELISTSNKHRVSVPKSCLLNLPPKEGFYGNSVLLFGEENP 338
+ +LGR + + TV D+ +V S LPP G Y + + GE
Sbjct: 181 QIPSILGRAYTVGGTVVHGDKRGRQIGFPTANVGLSDEYLLPPV-GVYAVRLQVHGEWYD 239
Query: 339 VKCRI 343
C I
Sbjct: 240 GVCNI 244
>UNIPROTKB|Q9KU48 [details] [associations]
symbol:VC_0681 "Riboflavin kinase/FMN adenylyltransferase"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0006747 "FAD biosynthetic process" evidence=ISS] [GO:0008531
"riboflavin kinase activity" evidence=ISS] [GO:0009231 "riboflavin
biosynthetic process" evidence=ISS] [GO:0009398 "FMN biosynthetic
process" evidence=ISS] InterPro:IPR002606 InterPro:IPR015864
InterPro:IPR015865 InterPro:IPR023465 Pfam:PF01687 Pfam:PF06574
PIRSF:PIRSF004491 SMART:SM00904 EMBL:AE003852
GenomeReviews:AE003852_GR Gene3D:3.40.50.620 InterPro:IPR014729
GO:GO:0009231 GO:GO:0003919 GO:GO:0006747 KO:K11753
ProtClustDB:PRK05627 GO:GO:0008531 GO:GO:0009398 Gene3D:2.40.30.30
InterPro:IPR023468 PANTHER:PTHR22749 SUPFAM:SSF82114
TIGRFAMs:TIGR00083 OMA:IRDEQPF PIR:C82293 RefSeq:NP_230330.1
ProteinModelPortal:Q9KU48 DNASU:2615470 GeneID:2615470
KEGG:vch:VC0681 PATRIC:20080479 Uniprot:Q9KU48
Length = 322
Score = 116 (45.9 bits), Expect = 0.00038, P = 0.00038
Identities = 58/231 (25%), Positives = 103/231 (44%)
Query: 105 GGIVALGKFDALHIGHRELAIQ----ASKIGAP-YLLSFIGMAEVFGWEPRAPIVAKCDR 159
G ++ +G FD +H+GH+++ Q A ++G P +++F + +AP A+ R
Sbjct: 16 GCVLTIGNFDGVHLGHQQVLSQVVQRAQQMGLPSVVMTFEPQPLELFAKQQAP--ARLTR 73
Query: 160 KRVLSSWAPYCG--NVAPVEFQIQFSSVRHLSPQQFV-EKLSRELGVRGVVAGENYRFGY 216
R G + V F F+ L F+ + L LGV+ +V G+++ FG
Sbjct: 74 LRDKFVQLSKLGVDRLLCVNFNHHFAQ---LDAHTFIRDLLVTRLGVKFLVVGDDFCFGK 130
Query: 217 KAAGDASELVRLCEEYGMDACIINSVMDKHQDSRDIDCNDSKERGQVSSTRVRQALAMGD 276
+ G+ + L ++ G +D S C ++ +VSST +R+ALA
Sbjct: 131 ERQGNFA----LLQQAGQ-------ALDFEVVSTQSFC---LQQLRVSSTAIREALAADQ 176
Query: 277 MKYVSELLGRQHRLILTVNDHDELISTSNKHRVSVP-KSCLLNLPPKEGFY 326
+ S +LGR + + V+ +L T ++P K C+ P G Y
Sbjct: 177 LSSASAMLGRHYSISGRVSHGQKLGRTIGFPTANIPLKRCV---SPVSGVY 224
>TIGR_CMR|VC_0681 [details] [associations]
symbol:VC_0681 "riboflavin kinase/FMN adenylyltransferase"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0006747 "FAD
biosynthetic process" evidence=ISS] [GO:0008531 "riboflavin kinase
activity" evidence=ISS] [GO:0009231 "riboflavin biosynthetic
process" evidence=ISS] [GO:0009398 "FMN biosynthetic process"
evidence=ISS] InterPro:IPR002606 InterPro:IPR015864
InterPro:IPR015865 InterPro:IPR023465 Pfam:PF01687 Pfam:PF06574
PIRSF:PIRSF004491 SMART:SM00904 EMBL:AE003852
GenomeReviews:AE003852_GR Gene3D:3.40.50.620 InterPro:IPR014729
GO:GO:0009231 GO:GO:0003919 GO:GO:0006747 KO:K11753
ProtClustDB:PRK05627 GO:GO:0008531 GO:GO:0009398 Gene3D:2.40.30.30
InterPro:IPR023468 PANTHER:PTHR22749 SUPFAM:SSF82114
TIGRFAMs:TIGR00083 OMA:IRDEQPF PIR:C82293 RefSeq:NP_230330.1
ProteinModelPortal:Q9KU48 DNASU:2615470 GeneID:2615470
KEGG:vch:VC0681 PATRIC:20080479 Uniprot:Q9KU48
Length = 322
Score = 116 (45.9 bits), Expect = 0.00038, P = 0.00038
Identities = 58/231 (25%), Positives = 103/231 (44%)
Query: 105 GGIVALGKFDALHIGHRELAIQ----ASKIGAP-YLLSFIGMAEVFGWEPRAPIVAKCDR 159
G ++ +G FD +H+GH+++ Q A ++G P +++F + +AP A+ R
Sbjct: 16 GCVLTIGNFDGVHLGHQQVLSQVVQRAQQMGLPSVVMTFEPQPLELFAKQQAP--ARLTR 73
Query: 160 KRVLSSWAPYCG--NVAPVEFQIQFSSVRHLSPQQFV-EKLSRELGVRGVVAGENYRFGY 216
R G + V F F+ L F+ + L LGV+ +V G+++ FG
Sbjct: 74 LRDKFVQLSKLGVDRLLCVNFNHHFAQ---LDAHTFIRDLLVTRLGVKFLVVGDDFCFGK 130
Query: 217 KAAGDASELVRLCEEYGMDACIINSVMDKHQDSRDIDCNDSKERGQVSSTRVRQALAMGD 276
+ G+ + L ++ G +D S C ++ +VSST +R+ALA
Sbjct: 131 ERQGNFA----LLQQAGQ-------ALDFEVVSTQSFC---LQQLRVSSTAIREALAADQ 176
Query: 277 MKYVSELLGRQHRLILTVNDHDELISTSNKHRVSVP-KSCLLNLPPKEGFY 326
+ S +LGR + + V+ +L T ++P K C+ P G Y
Sbjct: 177 LSSASAMLGRHYSISGRVSHGQKLGRTIGFPTANIPLKRCV---SPVSGVY 224
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.322 0.138 0.423 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 380 361 0.00082 117 3 11 22 0.37 34
34 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 14
No. of states in DFA: 619 (66 KB)
Total size of DFA: 253 KB (2135 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 28.43u 0.09s 28.52t Elapsed: 00:00:01
Total cpu time: 28.43u 0.09s 28.52t Elapsed: 00:00:01
Start: Fri May 10 02:08:43 2013 End: Fri May 10 02:08:44 2013