BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016934
(380 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3OP1|A Chain A, Crystal Structure Of Macrolide-Efflux Protein Sp_1110 From
Streptococcus Pneumoniae
pdb|3OP1|B Chain B, Crystal Structure Of Macrolide-Efflux Protein Sp_1110 From
Streptococcus Pneumoniae
pdb|3OP1|C Chain C, Crystal Structure Of Macrolide-Efflux Protein Sp_1110 From
Streptococcus Pneumoniae
Length = 308
Score = 58.9 bits (141), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 53/188 (28%), Positives = 83/188 (44%), Gaps = 32/188 (17%)
Query: 107 IVALGKFDALHIGHRELAIQASKIGAPYLLSFI----GMAEVFGWEPRAP-----IVAKC 157
+V LG FD +H GH+EL A+K LL + + EP P I+
Sbjct: 23 VVVLGYFDGIHKGHQELFRVANKAARKDLLPIVVXTFNESPKIALEPYHPDLFLHILNPA 82
Query: 158 DRKRVLSSWAPYCGNVAPVEFQIQFSSVRHLSPQQFVEKLSRELGVRGVVAGENYRFGYK 217
+R+R L + ++F QF+S L+ Q+F + + +VAG +Y FG
Sbjct: 83 ERERKLKREG--VEELYLLDFSSQFAS---LTAQEFFATYIKAXNAKIIVAGFDYTFG-- 135
Query: 218 AAGDASELVRLCEEYGMDACIINSVMDKHQDSRDIDCNDSKERGQVSSTRVRQALAMGDM 277
D L + + I+ V D E+G++SSTR+RQA+ G++
Sbjct: 136 --SDKKTAEDLKNYFDGEVIIVPPVED--------------EKGKISSTRIRQAILDGNV 179
Query: 278 KYVSELLG 285
K +LLG
Sbjct: 180 KEAGKLLG 187
>pdb|3ZUG|A Chain A, E268d Mutant Of Fad Synthetase From Corynebacterium
Ammoniagenes
pdb|3ZUG|B Chain B, E268d Mutant Of Fad Synthetase From Corynebacterium
Ammoniagenes
Length = 338
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 53/185 (28%), Positives = 87/185 (47%), Gaps = 24/185 (12%)
Query: 108 VALGKFDALHIGHREL----AIQASKIGAPYLLSFIGMAEVFGWEPR-APIVAKCDRKRV 162
V +G FD +H GH++L +A ++GA ++ V + PR AP+ +R
Sbjct: 19 VTIGVFDGVHRGHQKLINATVEKAREVGAKAIMVTFDPHPVSVFLPRRAPLGITTLAERF 78
Query: 163 LSSWAPYCGNVAPVEFQIQFSSVRHLSPQQFVEKLSRE-LGVRGVVAGENYRFGYKAAGD 221
+ + V ++F + S SP+++VE L + L VV G N+ FG AAG
Sbjct: 79 ALAESFGIDGVLVIDFTRELSGT---SPEKYVEFLLEDTLHASHVVVGANFTFGENAAGT 135
Query: 222 ASELVRLCEEYGMDACIINSVMDKHQDSRDIDCNDSKERGQVSSTRVRQALAMGDMKYVS 281
A L ++C+ + + V+D D E ++SST VR+ L+ GD+ +
Sbjct: 136 ADSLRQICQ-----SRLTVDVIDLLDD----------EGVRISSTTVREFLSEGDVARAN 180
Query: 282 ELLGR 286
LGR
Sbjct: 181 WALGR 185
>pdb|2X0K|A Chain A, Crystal Structure Of Modular Fad Synthetase From
Corynebacterium Ammoniagenes
pdb|2X0K|B Chain B, Crystal Structure Of Modular Fad Synthetase From
Corynebacterium Ammoniagenes
Length = 338
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 53/185 (28%), Positives = 87/185 (47%), Gaps = 24/185 (12%)
Query: 108 VALGKFDALHIGHREL----AIQASKIGAPYLLSFIGMAEVFGWEPR-APIVAKCDRKRV 162
V +G FD +H GH++L +A ++GA ++ V + PR AP+ +R
Sbjct: 19 VTIGVFDGVHRGHQKLINATVEKAREVGAKAIMVTFDPHPVSVFLPRRAPLGITTLAERF 78
Query: 163 LSSWAPYCGNVAPVEFQIQFSSVRHLSPQQFVEKLSRE-LGVRGVVAGENYRFGYKAAGD 221
+ + V ++F + S SP+++VE L + L VV G N+ FG AAG
Sbjct: 79 ALAESFGIDGVLVIDFTRELSGT---SPEKYVEFLLEDTLHASHVVVGANFTFGENAAGT 135
Query: 222 ASELVRLCEEYGMDACIINSVMDKHQDSRDIDCNDSKERGQVSSTRVRQALAMGDMKYVS 281
A L ++C+ + + V+D D E ++SST VR+ L+ GD+ +
Sbjct: 136 ADSLRQICQ-----SRLTVDVIDLLDD----------EGVRISSTTVREFLSEGDVARAN 180
Query: 282 ELLGR 286
LGR
Sbjct: 181 WALGR 185
>pdb|1MRZ|A Chain A, Crystal Structure Of A Flavin Binding Protein From
Thermotoga Maritima, Tm379
pdb|1MRZ|B Chain B, Crystal Structure Of A Flavin Binding Protein From
Thermotoga Maritima, Tm379
pdb|1T6X|A Chain A, Crystal Structure Of Adp Bound Tm379
pdb|1T6X|B Chain B, Crystal Structure Of Adp Bound Tm379
pdb|1T6Y|A Chain A, Crystal Structure Of Adp, Amp, And Fmn Bound Tm379
pdb|1T6Y|B Chain B, Crystal Structure Of Adp, Amp, And Fmn Bound Tm379
pdb|1T6Z|A Chain A, Crystal Structure Of Riboflavin Bound Tm379
pdb|1T6Z|B Chain B, Crystal Structure Of Riboflavin Bound Tm379
pdb|1S4M|A Chain A, Crystal Structure Of Flavin Binding To Fad Synthetase From
Thermotoga Maritina
pdb|1S4M|B Chain B, Crystal Structure Of Flavin Binding To Fad Synthetase From
Thermotoga Maritina
Length = 293
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 49/188 (26%), Positives = 85/188 (45%), Gaps = 39/188 (20%)
Query: 107 IVALGKFDALHIGH-------RELAIQASKIGAPYLLSFIGMAEVFGWEPRAPIVAKCDR 159
+V++G FD +HIGH +E+A Y +S+ E F + ++ R
Sbjct: 2 VVSIGVFDGVHIGHQKVLRTMKEIAFFRKDDSLIYTISY--PPEYFLPDFPGLLMTVESR 59
Query: 160 KRVLSSWAPYCGNVAPVEFQIQFSSVRHLSPQQFVEK-LSRELGVRGVVAGENYRFGYKA 218
+LS +A + F ++ L+P+ FVE+ LS GV VV G ++RFG A
Sbjct: 60 VEMLSRYARTV--------VLDFFRIKDLTPEGFVERYLS---GVSAVVVGRDFRFGKNA 108
Query: 219 AGDASELVRLCEEYGMDACIINSVMDKHQDSRDIDCNDSKERGQVSSTRVRQALAMGDMK 278
+G+AS + G++ I V+ + + +VSS+ +R + G ++
Sbjct: 109 SGNAS----FLRKKGVEVYEIEDVVVQGK--------------RVSSSLIRNLVQEGRVE 150
Query: 279 YVSELLGR 286
+ LGR
Sbjct: 151 EIPAYLGR 158
>pdb|2I1L|A Chain A, Crystal Structure Of The C2 Form Of Fad Synthetase From
Thermotoga Maritima
pdb|2I1L|B Chain B, Crystal Structure Of The C2 Form Of Fad Synthetase From
Thermotoga Maritima
Length = 293
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 51/188 (27%), Positives = 84/188 (44%), Gaps = 39/188 (20%)
Query: 107 IVALGKFDALHIGH-------RELAIQASKIGAPYLLSFIGMAEVFGWEPRAPIVAKCDR 159
+V++G FD +HIGH +E+A Y +S+ E F P P +
Sbjct: 2 VVSIGVFDGVHIGHQKVLRTXKEIAFFRKDDSLIYTISY--PPEYF--LPDFPGLLXTVE 57
Query: 160 KRVLSSWAPYCGNVAPVEFQIQFSSVRHLSPQQFVEK-LSRELGVRGVVAGENYRFGYKA 218
RV + Y V + F ++ L+P+ FVE+ LS GV VV G ++RFG A
Sbjct: 58 SRV-EXLSRYARTVV-----LDFFRIKDLTPEGFVERYLS---GVSAVVVGRDFRFGKNA 108
Query: 219 AGDASELVRLCEEYGMDACIINSVMDKHQDSRDIDCNDSKERGQVSSTRVRQALAMGDMK 278
+G+AS + G++ I V+ + + +VSS+ +R + G ++
Sbjct: 109 SGNAS----FLRKKGVEVYEIEDVVVQGK--------------RVSSSLIRNLVQEGRVE 150
Query: 279 YVSELLGR 286
+ LGR
Sbjct: 151 EIPAYLGR 158
>pdb|2ZMV|A Chain A, Crystal Structure Of Synbindin
pdb|2ZMV|B Chain B, Crystal Structure Of Synbindin
Length = 227
Score = 31.6 bits (70), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 36/86 (41%), Gaps = 4/86 (4%)
Query: 107 IVALGKFDALHIGHRELAIQASKIGAPYLLSFIGMAEVFGWEPRAPIVAKCDRKRVLSSW 166
+VA G+ D + +GH LAI + Y + E G P+ + R R+ S+
Sbjct: 48 LVAFGQRDGIRVGHAVLAINGMDVNGRYTADGKEVLEYLGNPANYPVSIRFGRPRLTSNE 107
Query: 167 APYCGNVAPVEFQIQFSSVRHLSPQQ 192
++ F F+ LSP+Q
Sbjct: 108 KLMLASM----FHSLFAIGSQLSPEQ 129
>pdb|2J3T|D Chain D, The Crystal Structure Of The Bet3-Trs33-Bet5-Trs23 Complex
Length = 219
Score = 31.6 bits (70), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 36/86 (41%), Gaps = 4/86 (4%)
Query: 107 IVALGKFDALHIGHRELAIQASKIGAPYLLSFIGMAEVFGWEPRAPIVAKCDRKRVLSSW 166
+VA G+ D + +GH LAI + Y + E G P+ + R R+ S+
Sbjct: 48 LVAFGQRDGIRVGHAVLAINGMDVNGRYTADGKEVLEYLGNPANYPVSIRFGRPRLTSNE 107
Query: 167 APYCGNVAPVEFQIQFSSVRHLSPQQ 192
++ F F+ LSP+Q
Sbjct: 108 KLMLASM----FHSLFAIGSQLSPEQ 129
>pdb|2XME|A Chain A, The X-Ray Structure Of Ctp:inositol-1-Phosphate
Cytidylyltransferase From Archaeoglobus Fulgidus
pdb|2XME|B Chain B, The X-Ray Structure Of Ctp:inositol-1-Phosphate
Cytidylyltransferase From Archaeoglobus Fulgidus
pdb|2XME|C Chain C, The X-Ray Structure Of Ctp:inositol-1-Phosphate
Cytidylyltransferase From Archaeoglobus Fulgidus
pdb|2XME|D Chain D, The X-Ray Structure Of Ctp:inositol-1-Phosphate
Cytidylyltransferase From Archaeoglobus Fulgidus
pdb|2XME|E Chain E, The X-Ray Structure Of Ctp:inositol-1-Phosphate
Cytidylyltransferase From Archaeoglobus Fulgidus
pdb|2XME|F Chain F, The X-Ray Structure Of Ctp:inositol-1-Phosphate
Cytidylyltransferase From Archaeoglobus Fulgidus
pdb|2XME|G Chain G, The X-Ray Structure Of Ctp:inositol-1-Phosphate
Cytidylyltransferase From Archaeoglobus Fulgidus
pdb|2XME|H Chain H, The X-Ray Structure Of Ctp:inositol-1-Phosphate
Cytidylyltransferase From Archaeoglobus Fulgidus
pdb|2XME|I Chain I, The X-Ray Structure Of Ctp:inositol-1-Phosphate
Cytidylyltransferase From Archaeoglobus Fulgidus
pdb|2XME|J Chain J, The X-Ray Structure Of Ctp:inositol-1-Phosphate
Cytidylyltransferase From Archaeoglobus Fulgidus
pdb|2XME|K Chain K, The X-Ray Structure Of Ctp:inositol-1-Phosphate
Cytidylyltransferase From Archaeoglobus Fulgidus
pdb|2XME|L Chain L, The X-Ray Structure Of Ctp:inositol-1-Phosphate
Cytidylyltransferase From Archaeoglobus Fulgidus
pdb|2XMH|A Chain A, The X-Ray Structure Of Ctp:inositol-1-Phosphate
Cytidylyltransferase From Archaeoglobus Fulgidus
pdb|2XMH|B Chain B, The X-Ray Structure Of Ctp:inositol-1-Phosphate
Cytidylyltransferase From Archaeoglobus Fulgidus
pdb|2XMH|C Chain C, The X-Ray Structure Of Ctp:inositol-1-Phosphate
Cytidylyltransferase From Archaeoglobus Fulgidus
pdb|2XMH|D Chain D, The X-Ray Structure Of Ctp:inositol-1-Phosphate
Cytidylyltransferase From Archaeoglobus Fulgidus
pdb|2XMH|E Chain E, The X-Ray Structure Of Ctp:inositol-1-Phosphate
Cytidylyltransferase From Archaeoglobus Fulgidus
pdb|2XMH|F Chain F, The X-Ray Structure Of Ctp:inositol-1-Phosphate
Cytidylyltransferase From Archaeoglobus Fulgidus
Length = 232
Score = 31.2 bits (69), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 65/149 (43%), Gaps = 22/149 (14%)
Query: 116 LHIGHRELAIQASKIGAPYLLSFIGMAEVFGWEPRAPIVAKCDRKRVLSSWAPYCGN--- 172
+ +G E+ ++ K+ +P++ FI +A + + A + K +++ P GN
Sbjct: 40 VRVGGCEIILRTMKLLSPHVSEFIIVASRYADDIDAFLKDKGFNYKIVRHDRPEKGNGYS 99
Query: 173 --VAP--VEFQIQFSSVRHLSPQQFVEKLSRELGVRGVVAGENYRFGYKAAGDASELVRL 228
VA VE + + H+ QQF+EK R GV+A RF D E ++
Sbjct: 100 LLVAKNHVEDRFILTMGDHVYSQQFIEKAVRG---EGVIADREPRF-----VDIGEATKI 151
Query: 229 CEEYGMDACIINSVMDKHQDSRDIDCNDS 257
E G A I +D R+ DC D+
Sbjct: 152 RVEDGRVAKI-------GKDLREFDCVDT 173
>pdb|2WET|A Chain A, Crystal Structure Of Tryptophan 5-Halogenase (Pyrh)
Complex With Fad (Tryptophan)
pdb|2WET|B Chain B, Crystal Structure Of Tryptophan 5-Halogenase (Pyrh)
Complex With Fad (Tryptophan)
pdb|2WET|C Chain C, Crystal Structure Of Tryptophan 5-Halogenase (Pyrh)
Complex With Fad (Tryptophan)
pdb|2WET|D Chain D, Crystal Structure Of Tryptophan 5-Halogenase (Pyrh)
Complex With Fad (Tryptophan)
pdb|2WEU|A Chain A, Crystal Structure Of Tryptophan 5-Halogenase (Pyrh)
Complex With Substrate Tryptophan
pdb|2WEU|B Chain B, Crystal Structure Of Tryptophan 5-Halogenase (Pyrh)
Complex With Substrate Tryptophan
pdb|2WEU|C Chain C, Crystal Structure Of Tryptophan 5-Halogenase (Pyrh)
Complex With Substrate Tryptophan
pdb|2WEU|D Chain D, Crystal Structure Of Tryptophan 5-Halogenase (Pyrh)
Complex With Substrate Tryptophan
Length = 511
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 35/85 (41%), Gaps = 8/85 (9%)
Query: 186 RHLSPQQFVEKLSRELGVRGVVAGENYRFGYKAAGDASELVRLCEEYGMDACIINSVMDK 245
R L F ++ LG R +A + +F Y DA E+ R EY + + + V D
Sbjct: 137 RMLDGSLFASQVDESLG-RSTLAEQRAQFPYAYHFDADEVARYLSEYAIARGVRHVVDDV 195
Query: 246 HQDSRDIDCNDSKERGQVSSTRVRQ 270
+D ERG +S +Q
Sbjct: 196 QHVGQD-------ERGWISGVHTKQ 213
>pdb|2WES|A Chain A, Crystal Structures Of Mutant E46q Of Tryptophan 5-
Halogenase (pyrh)
pdb|2WES|B Chain B, Crystal Structures Of Mutant E46q Of Tryptophan 5-
Halogenase (pyrh)
pdb|2WES|C Chain C, Crystal Structures Of Mutant E46q Of Tryptophan 5-
Halogenase (pyrh)
pdb|2WES|D Chain D, Crystal Structures Of Mutant E46q Of Tryptophan 5-
Halogenase (pyrh)
Length = 511
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 35/85 (41%), Gaps = 8/85 (9%)
Query: 186 RHLSPQQFVEKLSRELGVRGVVAGENYRFGYKAAGDASELVRLCEEYGMDACIINSVMDK 245
R L F ++ LG R +A + +F Y DA E+ R EY + + + V D
Sbjct: 137 RMLDGSLFASQVDESLG-RSTLAEQRAQFPYAYHFDADEVARYLSEYAIARGVRHVVDDV 195
Query: 246 HQDSRDIDCNDSKERGQVSSTRVRQ 270
+D ERG +S +Q
Sbjct: 196 QHVGQD-------ERGWISGVHTKQ 213
>pdb|2JSN|A Chain A, Solution Structure Of The Atypical Pdz-Like Domain Of
Synbindin
Length = 96
Score = 29.3 bits (64), Expect = 4.2, Method: Composition-based stats.
Identities = 16/59 (27%), Positives = 26/59 (44%)
Query: 107 IVALGKFDALHIGHRELAIQASKIGAPYLLSFIGMAEVFGWEPRAPIVAKCDRKRVLSS 165
+VA G+ D + +GH LAI + Y + E G P+ + R R+ S+
Sbjct: 38 LVAFGQRDGIRVGHAVLAINGMDVNGRYTADGKEVLEYLGNPANYPVSIRFGRPRLTSN 96
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.138 0.424
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,082,571
Number of Sequences: 62578
Number of extensions: 435955
Number of successful extensions: 920
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 904
Number of HSP's gapped (non-prelim): 11
length of query: 380
length of database: 14,973,337
effective HSP length: 101
effective length of query: 279
effective length of database: 8,652,959
effective search space: 2414175561
effective search space used: 2414175561
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)