BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016934
(380 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P57250|RIBF_BUCAI Riboflavin biosynthesis protein RibF OS=Buchnera aphidicola subsp.
Acyrthosiphon pisum (strain APS) GN=ribF PE=3 SV=1
Length = 313
Score = 68.6 bits (166), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 54/193 (27%), Positives = 95/193 (49%), Gaps = 31/193 (16%)
Query: 104 AGGIVALGKFDALHIGHRELAIQASKIGAPYLLSFIGMAEVFGWEPR---------APIV 154
+ +V +G FD +H+GH++L +IG Y LS I V +EP+ AP+
Sbjct: 15 SNSVVTIGNFDGIHLGHQKLFSHIYQIGQKYKLSTI----VVLFEPQPLEFLRKNNAPVR 70
Query: 155 AKCDRKRVLSSWAPYCGNVAPVEFQIQFSSVRHLSPQQF-VEKLSRELGVRGVVAGENYR 213
R+++ + ++ V+F F S LS + F + L +L ++ +V G ++R
Sbjct: 71 ITKFREKIRRISSYNFDSILCVKFNKSFQS---LSAKDFIINILINKLHLKFIVIGNDFR 127
Query: 214 FGYKAAGDASELVRLCEEYGMDACIINSVMDKHQDSRDIDCNDSKERGQVSSTRVRQALA 273
FG++ G+ + L +L +Y + I R + N+ K +SST +R+AL+
Sbjct: 128 FGFQRNGNINLLKKLGYKYQFNVIKI----------RPLYKNNIK----ISSTNIRKALS 173
Query: 274 MGDMKYVSELLGR 286
++K S LLGR
Sbjct: 174 ENNIKLASLLLGR 186
>sp|Q8K9Z1|RIBF_BUCAP Riboflavin biosynthesis protein RibF OS=Buchnera aphidicola subsp.
Schizaphis graminum (strain Sg) GN=ribF PE=3 SV=1
Length = 312
Score = 62.4 bits (150), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 48/189 (25%), Positives = 92/189 (48%), Gaps = 30/189 (15%)
Query: 108 VALGKFDALHIGHRELAIQASKIGAPYLLSFIGMAEVFGWEPRAPIVAKCDRKRV----- 162
V++G FD +H+GH++L KIG + + + +F +P + K KR+
Sbjct: 19 VSIGNFDGVHLGHQKLLSNLYKIGKKN--NILTVLILFEPQPLEFLNNKNSPKRLTTIQN 76
Query: 163 ----LSSWAPYCGNVAPVEFQIQFSSVRHLSPQQFVEK-LSRELGVRGVVAGENYRFGYK 217
+ SW + ++F FSS LS ++F++ L +L ++ ++ G+++RFG K
Sbjct: 77 KIKYIQSWK--IDIILCIKFNESFSS---LSAEKFIKNILITKLNIKFIIIGDDFRFGSK 131
Query: 218 AAGDASELVRLCEEYGMDACIINSVMDKHQDSRDIDCNDSKERGQVSSTRVRQALAMGDM 277
G+ S L + +Y I+S++ K++ ++SST +R+ L +
Sbjct: 132 RNGNISLLKEIGYQYNFKVIEISSLLYKNKI-------------KISSTNIRKCLLENKI 178
Query: 278 KYVSELLGR 286
+ +LLGR
Sbjct: 179 ELARKLLGR 187
>sp|P0AG43|RIBF_SHIFL Riboflavin biosynthesis protein RibF OS=Shigella flexneri GN=ribF
PE=3 SV=1
Length = 313
Score = 62.0 bits (149), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 71/245 (28%), Positives = 105/245 (42%), Gaps = 31/245 (12%)
Query: 101 SPVAGGIVALGKFDALHIGHRELAIQASKIGAPYLLSFIGMA------EVFGWEPRAPIV 154
+P G ++ +G FD +H GHR L + G L + M E+F + +AP
Sbjct: 13 APQEGCVLTIGNFDGVHRGHRALLQGLQEEGRKRNLPVMVMLFEPQPLELFATD-KAP-- 69
Query: 155 AKCDRKRVLSSWAPYCG--NVAPVEFQIQFSSVRHLSPQQFV-EKLSRELGVRGVVAGEN 211
A+ R R + CG V V F +F++ L+ Q F+ + L + L V+ + G++
Sbjct: 70 ARLTRLREKLRYLAECGVDYVLCVRFDRRFAA---LTAQNFISDLLVKHLRVKFLAVGDD 126
Query: 212 YRFGYKAAGDASELVRLCEEYGMDACIINSVMDKHQDSRDIDCNDSKERGQVSSTRVRQA 271
+RFG GD L + EYG D S C ++SST VRQA
Sbjct: 127 FRFGAGREGDFLLLQKAGMEYGFDIT-----------STQTFCEGGV---RISSTAVRQA 172
Query: 272 LAMGDMKYVSELLGRQHRLILTVNDHDELISTSNKHRVSVPKSCLLNLPPKEGFYGNSVL 331
LA ++ LLG + V DEL T +VP + P +G Y VL
Sbjct: 173 LADDNLALAESLLGHPFAISGRVVHGDELGRTIGFPTANVP--LRRQVSPVKGVYAVEVL 230
Query: 332 LFGEE 336
GE+
Sbjct: 231 GLGEK 235
>sp|P0AG40|RIBF_ECOLI Riboflavin biosynthesis protein RibF OS=Escherichia coli (strain
K12) GN=ribF PE=1 SV=1
Length = 313
Score = 62.0 bits (149), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 71/245 (28%), Positives = 105/245 (42%), Gaps = 31/245 (12%)
Query: 101 SPVAGGIVALGKFDALHIGHRELAIQASKIGAPYLLSFIGMA------EVFGWEPRAPIV 154
+P G ++ +G FD +H GHR L + G L + M E+F + +AP
Sbjct: 13 APQEGCVLTIGNFDGVHRGHRALLQGLQEEGRKRNLPVMVMLFEPQPLELFATD-KAP-- 69
Query: 155 AKCDRKRVLSSWAPYCG--NVAPVEFQIQFSSVRHLSPQQFV-EKLSRELGVRGVVAGEN 211
A+ R R + CG V V F +F++ L+ Q F+ + L + L V+ + G++
Sbjct: 70 ARLTRLREKLRYLAECGVDYVLCVRFDRRFAA---LTAQNFISDLLVKHLRVKFLAVGDD 126
Query: 212 YRFGYKAAGDASELVRLCEEYGMDACIINSVMDKHQDSRDIDCNDSKERGQVSSTRVRQA 271
+RFG GD L + EYG D S C ++SST VRQA
Sbjct: 127 FRFGAGREGDFLLLQKAGMEYGFDIT-----------STQTFCEGGV---RISSTAVRQA 172
Query: 272 LAMGDMKYVSELLGRQHRLILTVNDHDELISTSNKHRVSVPKSCLLNLPPKEGFYGNSVL 331
LA ++ LLG + V DEL T +VP + P +G Y VL
Sbjct: 173 LADDNLALAESLLGHPFAISGRVVHGDELGRTIGFPTANVP--LRRQVSPVKGVYAVEVL 230
Query: 332 LFGEE 336
GE+
Sbjct: 231 GLGEK 235
>sp|P0AG41|RIBF_ECOL6 Riboflavin biosynthesis protein RibF OS=Escherichia coli O6:H1
(strain CFT073 / ATCC 700928 / UPEC) GN=ribF PE=3 SV=1
Length = 313
Score = 62.0 bits (149), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 71/245 (28%), Positives = 105/245 (42%), Gaps = 31/245 (12%)
Query: 101 SPVAGGIVALGKFDALHIGHRELAIQASKIGAPYLLSFIGMA------EVFGWEPRAPIV 154
+P G ++ +G FD +H GHR L + G L + M E+F + +AP
Sbjct: 13 APQEGCVLTIGNFDGVHRGHRALLQGLQEEGRKRNLPVMVMLFEPQPLELFATD-KAP-- 69
Query: 155 AKCDRKRVLSSWAPYCG--NVAPVEFQIQFSSVRHLSPQQFV-EKLSRELGVRGVVAGEN 211
A+ R R + CG V V F +F++ L+ Q F+ + L + L V+ + G++
Sbjct: 70 ARLTRLREKLRYLAECGVDYVLCVRFDRRFAA---LTAQNFISDLLVKHLRVKFLAVGDD 126
Query: 212 YRFGYKAAGDASELVRLCEEYGMDACIINSVMDKHQDSRDIDCNDSKERGQVSSTRVRQA 271
+RFG GD L + EYG D S C ++SST VRQA
Sbjct: 127 FRFGAGREGDFLLLQKAGMEYGFDIT-----------STQTFCEGGV---RISSTAVRQA 172
Query: 272 LAMGDMKYVSELLGRQHRLILTVNDHDELISTSNKHRVSVPKSCLLNLPPKEGFYGNSVL 331
LA ++ LLG + V DEL T +VP + P +G Y VL
Sbjct: 173 LADDNLALAESLLGHPFAISGRVVHGDELGRTIGFPTANVP--LRRQVSPVKGVYAVEVL 230
Query: 332 LFGEE 336
GE+
Sbjct: 231 GLGEK 235
>sp|P0AG42|RIBF_ECO57 Riboflavin biosynthesis protein RibF OS=Escherichia coli O157:H7
GN=ribF PE=3 SV=1
Length = 313
Score = 62.0 bits (149), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 71/245 (28%), Positives = 105/245 (42%), Gaps = 31/245 (12%)
Query: 101 SPVAGGIVALGKFDALHIGHRELAIQASKIGAPYLLSFIGMA------EVFGWEPRAPIV 154
+P G ++ +G FD +H GHR L + G L + M E+F + +AP
Sbjct: 13 APQEGCVLTIGNFDGVHRGHRALLQGLQEEGRKRNLPVMVMLFEPQPLELFATD-KAP-- 69
Query: 155 AKCDRKRVLSSWAPYCG--NVAPVEFQIQFSSVRHLSPQQFV-EKLSRELGVRGVVAGEN 211
A+ R R + CG V V F +F++ L+ Q F+ + L + L V+ + G++
Sbjct: 70 ARLTRLREKLRYLAECGVDYVLCVRFDRRFAA---LTAQNFISDLLVKHLRVKFLAVGDD 126
Query: 212 YRFGYKAAGDASELVRLCEEYGMDACIINSVMDKHQDSRDIDCNDSKERGQVSSTRVRQA 271
+RFG GD L + EYG D S C ++SST VRQA
Sbjct: 127 FRFGAGREGDFLLLQKAGMEYGFDIT-----------STQTFCEGGV---RISSTAVRQA 172
Query: 272 LAMGDMKYVSELLGRQHRLILTVNDHDELISTSNKHRVSVPKSCLLNLPPKEGFYGNSVL 331
LA ++ LLG + V DEL T +VP + P +G Y VL
Sbjct: 173 LADDNLALAESLLGHPFAISGRVVHGDELGRTIGFPTANVP--LRRQVSPVKGVYAVEVL 230
Query: 332 LFGEE 336
GE+
Sbjct: 231 GLGEK 235
>sp|P73651|RIBF_SYNY3 Riboflavin biosynthesis protein RibF OS=Synechocystis sp. (strain
PCC 6803 / Kazusa) GN=ribF PE=3 SV=1
Length = 284
Score = 54.3 bits (129), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/164 (26%), Positives = 79/164 (48%), Gaps = 24/164 (14%)
Query: 187 HLSPQQFVEK-LSRELGVRGVVAGENYRFGYKAAGDASELVRLCEEYGMDACIINSVMDK 245
+LSP+QFV+ L +L + + G+++ FG++ G+ +L L +E+G+ I
Sbjct: 69 NLSPKQFVQSILVEQLQAKFISVGQDFCFGHQRRGNVQDLQNLGQEFGITVAIAQ----- 123
Query: 246 HQDSRDIDCNDSKERGQVSSTRVRQALAMGDMKYVSELLGRQHRLILTVNDHDELISTSN 305
++ D++ ++SS+R+R+AL G + + LLGR + L TV +L
Sbjct: 124 ------LEQTDTE---RISSSRIRRALKEGKLAMANHLLGRPYALRGTVVQGQQL----- 169
Query: 306 KHRVSVPKSCLL----NLPPKEGFYGNSVLLFGEENPVKCRICI 345
++ P + L L PK G Y V L + P+ I +
Sbjct: 170 GRKLGFPTANLCLPADKLWPKYGVYAGWVNLNALDVPIPAVINL 213
>sp|Q59263|RIBF_CORAM Riboflavin biosynthesis protein RibF OS=Corynebacterium
ammoniagenes GN=ribF PE=1 SV=1
Length = 338
Score = 53.1 bits (126), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 53/186 (28%), Positives = 87/186 (46%), Gaps = 24/186 (12%)
Query: 108 VALGKFDALHIGHREL----AIQASKIGAPYLLSFIGMAEVFGWEPR-APIVAKCDRKRV 162
V +G FD +H GH++L +A ++GA ++ V + PR AP+ +R
Sbjct: 19 VTIGVFDGVHRGHQKLINATVEKAREVGAKAIMVTFDPHPVSVFLPRRAPLGITTLAERF 78
Query: 163 LSSWAPYCGNVAPVEFQIQFSSVRHLSPQQFVEKLSRE-LGVRGVVAGENYRFGYKAAGD 221
+ + V ++F + S SP+++VE L + L VV G N+ FG AAG
Sbjct: 79 ALAESFGIDGVLVIDFTRELSGT---SPEKYVEFLLEDTLHASHVVVGANFTFGENAAGT 135
Query: 222 ASELVRLCEEYGMDACIINSVMDKHQDSRDIDCNDSKERGQVSSTRVRQALAMGDMKYVS 281
A L ++C+ + + V+D D E ++SST VR+ L+ GD+ +
Sbjct: 136 ADSLRQICQ-----SRLTVDVIDLLDD----------EGVRISSTTVREFLSEGDVARAN 180
Query: 282 ELLGRQ 287
LGR
Sbjct: 181 WALGRH 186
>sp|P54575|RIBC_BACSU Riboflavin biosynthesis protein RibC OS=Bacillus subtilis (strain
168) GN=ribC PE=3 SV=2
Length = 316
Score = 51.2 bits (121), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 51/196 (26%), Positives = 90/196 (45%), Gaps = 34/196 (17%)
Query: 104 AGGIVALGKFDALHIGHRELAIQASKIGAPYLLSFIGM------AEVFG--WEPR---AP 152
A ++ALG FD +H+GH+++ A +I L+ M + V G EP+ P
Sbjct: 18 AKSVMALGYFDGVHLGHQKVIGTAKQIAEEKGLTLAVMTFHPHPSHVLGRDKEPKDLITP 77
Query: 153 IVAKCDRKRVLSSWAPYCGNVAPVEFQIQFSSVRHLSPQQFVEKLSRELGVRGVVAGENY 212
+ K ++ L + Y V+F F+S LSP+QF+++ L V+ VAG ++
Sbjct: 78 LEDKINQIEQLGTEVLYV-----VKFNEVFAS---LSPKQFIDQYIIGLNVQHAVAGFDF 129
Query: 213 RFGYKAAGDASELVRLCEEYGMDACIINSVMDKHQDSRDIDCNDSKERGQVSSTRVRQAL 272
+G G + + G C + + + QD + +SS+ +R AL
Sbjct: 130 TYGKYGKGTMKTMPDDLD--GKAGCTMVEKLTE-QDKK------------ISSSYIRTAL 174
Query: 273 AMGDMKYVSELLGRQH 288
GD++ + LLG+ +
Sbjct: 175 QNGDVELANVLLGQPY 190
>sp|P44957|RIBF_HAEIN Riboflavin biosynthesis protein RibF OS=Haemophilus influenzae
(strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=ribF PE=3
SV=1
Length = 308
Score = 49.7 bits (117), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 50/196 (25%), Positives = 90/196 (45%), Gaps = 29/196 (14%)
Query: 105 GGIVALGKFDALHIGH----RELAIQASKIGAPYLLSFIGMAEVFGWEPRAPIVAKCDRK 160
G + +G FD +H+GH R L +A ++ P + +F +PR + K
Sbjct: 16 GCALTIGNFDGVHLGHQTVLRHLRQKADELNLPMAVL------LFESQPREYFMGKNAPA 69
Query: 161 RVLSSWAP-YCGNVAPVEFQIQFSSVRHLSPQQ---FVEK-LSRELGVRGVVAGENYRFG 215
R++ Y A V+ I R + Q F+E+ L L V+ + G++++FG
Sbjct: 70 RLMRLRDKIYYLEKAKVDVVIVAKFDRTFAEQLADVFIEQTLVNHLHVKFLSIGDDFKFG 129
Query: 216 YKAAGDASELVRLCEEYGMDACIINSVMDKHQDSRDIDCNDSKERGQVSSTRVRQALAMG 275
K G+ + L + +G +D+R C D++ ++SST +R+ALA
Sbjct: 130 SKRQGNFAMLQAASKRFGFIV----------EDNRSF-CLDAQ---RISSTAIREALAND 175
Query: 276 DMKYVSELLGRQHRLI 291
D++ LLG+ +R+
Sbjct: 176 DLQLAENLLGKPYRIF 191
>sp|A4IT50|RIBF_GEOTN Putative riboflavin biosynthesis protein RibF OS=Geobacillus
thermodenitrificans (strain NG80-2) GN=ribF PE=1 SV=1
Length = 179
Score = 40.8 bits (94), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 48/190 (25%), Positives = 80/190 (42%), Gaps = 38/190 (20%)
Query: 105 GGIVALGKFDALHIGHRELAIQASKIGAPYLLSFIGMAEVFGWEPR---------APIVA 155
G +VA+G FD +H GH+ + QA + L +A PR +
Sbjct: 14 GSVVAIGAFDGVHQGHQAVLRQA--VERSRQLGVESVAYTIDPPPRCRFQGSRMLTTLQE 71
Query: 156 KCDRKRVLSSWAPYCGNVAPVEFQIQFSSVRHLSPQQFVEKLSRELGVRGVVAGENYRFG 215
K DR VL + F ++++ R F+ +L+ L R V+ G+++RFG
Sbjct: 72 KLDRFAVLG-----LNHAVVAHFDERYAARR---VDAFIRELT-ALNPREVIVGQDFRFG 122
Query: 216 YKAAGDASELVRLCEEYGMDACIINSVMDKHQDSRDIDCNDSKERGQVSSTRVRQALAMG 275
GD + L R I+ +V C D + ++SSTR+R+ + G
Sbjct: 123 RNREGDVALLRR-----HFPVRIVQTVC----------CADGQ---RISSTRIRELIERG 164
Query: 276 DMKYVSELLG 285
+ + + LLG
Sbjct: 165 EWEQSTVLLG 174
>sp|D3RZA9|RIBL_FERPA FAD synthase OS=Ferroglobus placidus (strain DSM 10642 / AEDII12DO)
GN=ribL PE=3 SV=1
Length = 152
Score = 39.3 bits (90), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 52/111 (46%), Gaps = 12/111 (10%)
Query: 107 IVALGKFDALHIGHRELAIQASKIGAPYLLSFIGMAEVFGWEPRAPIVAKCDRKRVLSSW 166
+VA G FD +H GH +A K+G YL+ + + +P+ PI+ + R+RV+ +
Sbjct: 4 VVATGTFDIIHPGHVRFLEEAKKLGD-YLVVIVAREKNVKHKPK-PIMPEEQRRRVVEAL 61
Query: 167 APYCGNVAPVEFQIQFSSVRHLSP--------QQFVEK-LSRELGVRGVVA 208
P + E I F + + P Q F E+ L EL RG+ A
Sbjct: 62 KPVDEAILGDEEDI-FKPIEKIKPDVIALGYDQHFDEEWLREELRKRGIKA 111
>sp|D2RES5|RIBL_ARCPA FAD synthase OS=Archaeoglobus profundus (strain DSM 5631 / JCM 9629
/ NBRC 100127 / Av18) GN=ribL PE=3 SV=1
Length = 155
Score = 38.5 bits (88), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 50/109 (45%), Gaps = 12/109 (11%)
Query: 107 IVALGKFDALHIGHRELAIQASKIGAPYLLSFIGMAEVFGWEPRAPIVAKCDRKRVLSSW 166
+VA G FD +H GH +A K+G L+ + + +P+ PI+ + R RV+S+
Sbjct: 4 VVATGTFDIIHPGHIRFLEEAKKLGDE-LIVIVAREKNVRHKPK-PIIPEEQRVRVVSAL 61
Query: 167 APYCGNVAPVEFQIQFSSVRHLSP--------QQFVE-KLSRELGVRGV 206
P + E I F + L P Q F E KL EL RG+
Sbjct: 62 KPVDKAILGDEHDI-FKPIMELKPDIIALGYDQHFDEKKLEEELRKRGL 109
>sp|O84990|RIBF_RHOOP Putative riboflavin biosynthesis protein RibF OS=Rhodococcus opacus
GN=ribF PE=3 SV=1
Length = 248
Score = 38.1 bits (87), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 47/180 (26%), Positives = 77/180 (42%), Gaps = 26/180 (14%)
Query: 108 VALGKFDALHIGHRELAIQASKIGAPYLLSFIGMAEVFGWEPRAPIVAKCDRKRVLSSW- 166
VA+G FD +H+GHR++ +G +L+F + PR + DR+ L
Sbjct: 22 VAIGAFDGVHLGHRQVL-----VGCDTVLTF-DPHPMHVLAPRPALRLLSDRRTKLRKLE 75
Query: 167 APYCGNVAPVEFQIQFSSVRHLSPQQFVEKLSRE-LGVRGVVAGENYRFGYKAAGDASEL 225
A VA + F +S V + FVE++ + L V G N+RFG G
Sbjct: 76 ALGIRRVAFIPFDEGWSRV---TADDFVERVVIDRLHASRVSVGANFRFGAHGVGTP--- 129
Query: 226 VRLCEEYGMDACIINSVMDKHQDSRDIDCNDSKERGQVSSTRVRQALAMGDMKYVSELLG 285
E + + V+ Q + +SSTR+R+ +A G+++ +LLG
Sbjct: 130 ----ETFNNYQSLQTRVVQLVQRGPGAE--------PISSTRIRKLVAAGNIEDAIDLLG 177
>sp|E1RHM5|RIBL_METP4 FAD synthase OS=Methanoplanus petrolearius (strain DSM 11571 / OCM
486 / SEBR 4847) GN=ribL PE=3 SV=1
Length = 148
Score = 35.8 bits (81), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 61/151 (40%), Gaps = 27/151 (17%)
Query: 107 IVALGKFDALHIGHRELAIQASKIGAPYLLSFIGMAEVFGWEPRAPIVAKCDRKRVLSSW 166
IVA G FD LH GH ++ K+G L I E +P+ P++ + R R++ S
Sbjct: 4 IVATGTFDILHPGHIYYLEESRKLGDE-LHVIIARDENVRHKPK-PVIPEQQRLRMVQSL 61
Query: 167 APY----CGNVAPVEFQIQFSSVRHLSP-------QQFV--EKLSRELGVRGVVAGENYR 213
P G+ + F +R + P QF EKL +L G+ A
Sbjct: 62 KPVDYARLGSTTDI-----FEPIREIQPDIITLGFNQFFNEEKLKCDLEENGISAEVVRI 116
Query: 214 FGYKAAGDASE-------LVRLCEEYGMDAC 237
GY G S L+R C+E D+
Sbjct: 117 EGYSGEGFCSSRNIMKQILIRRCKELQDDST 147
>sp|C5A1S7|RIBL_THEGJ FAD synthase OS=Thermococcus gammatolerans (strain DSM 15229 / JCM
11827 / EJ3) GN=ribL PE=3 SV=1
Length = 151
Score = 35.0 bits (79), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 58/140 (41%), Gaps = 18/140 (12%)
Query: 111 GKFDALHIGHRELAIQASKIGAPYLLSFIGMAEVFGWEPRAPIVAKCDRKRVLSSW---- 166
G FD LH+GH QA ++G ++ V + R PI DR +L +
Sbjct: 16 GVFDILHVGHVHFLKQAKELGDELVVIVAHDETVRRNKRRNPINPAEDRAELLRAIRYVD 75
Query: 167 APYCGNVAPVEFQIQFSSVRHLSP--------QQF-VEKLSRELGVRGVVAGENYRFGYK 217
Y G+ ++F++ VR ++P Q F EKL EL G+ A E R Y
Sbjct: 76 EVYIGSPGGIDFEL----VRRINPDVIAIGPDQNFNCEKLKEELKRHGIEA-EVIRVPYL 130
Query: 218 AAGDASELVRLCEEYGMDAC 237
D ++ ++ + C
Sbjct: 131 YKSDRAKTTKIIRRIVEEFC 150
>sp|Q5JHT4|RIBL_PYRKO FAD synthase OS=Pyrococcus kodakaraensis (strain ATCC BAA-918 / JCM
12380 / KOD1) GN=ribL PE=3 SV=1
Length = 149
Score = 34.3 bits (77), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 53/129 (41%), Gaps = 10/129 (7%)
Query: 111 GKFDALHIGHRELAIQASKIGAPYLLSFIGMAEVFGWEPRAPIVAKCDRKRVLSSW---- 166
G FD LH+GH QA ++G ++ V + R PI DR +L +
Sbjct: 14 GVFDILHVGHIHFLKQAKELGDELVVIVAHDETVRMQKRREPINPAEDRAELLRAIRYVD 73
Query: 167 APYCGNVAPVEFQIQFS---SVRHLSPQQFV--EKLSRELGVRGVVAGENYRFGYKAAGD 221
Y G ++ ++ V + P QF EKL EL G+ A E R Y D
Sbjct: 74 EVYIGTPGTIDMELVKRIDPDVIAIGPDQFFNCEKLKEELRKHGINA-EVIRIPYLYKSD 132
Query: 222 ASELVRLCE 230
++ ++ +
Sbjct: 133 RAKTSKIIQ 141
>sp|C6A439|RIBL_THESM FAD synthase OS=Thermococcus sibiricus (strain MM 739 / DSM 12597)
GN=ribL PE=3 SV=1
Length = 148
Score = 34.3 bits (77), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 56/140 (40%), Gaps = 10/140 (7%)
Query: 107 IVALGKFDALHIGHRELAIQASKIGAPYLLSFIGMAEVFGWEPRAPIVAKCDRKRVLSSW 166
+V G FD LH+GH QA ++G ++ V + R PI + +R VL +
Sbjct: 9 VVTGGVFDILHVGHIHFLKQAKELGDELVVIVAHDKTVEERKGRRPINSMYERAEVLKAL 68
Query: 167 APYCGNVAPVEFQIQFSSVRHLSP--------QQF-VEKLSRELGVRGVVAGENYRFGYK 217
V I F V+ L+P Q F V L EL + + A E R Y
Sbjct: 69 KMVDEVVIGEPNCISFEIVKQLNPDIIALGPDQNFDVSALKEELKKKNINA-EVIRIPYA 127
Query: 218 AAGDASELVRLCEEYGMDAC 237
D ++ ++ ++ C
Sbjct: 128 YKSDVAKTSKIIQKIVETFC 147
>sp|B6YXC8|RIBL_THEON FAD synthase OS=Thermococcus onnurineus (strain NA1) GN=ribL PE=3
SV=1
Length = 150
Score = 33.5 bits (75), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 35/142 (24%), Positives = 60/142 (42%), Gaps = 20/142 (14%)
Query: 107 IVALGKFDALHIGHRELAIQASKIGAPYLLSFIGMAEVFGWEPRAPIVAKCDRKRVLSSW 166
++A G FD LH+GH QA +G ++ V + R P+ DR +L +
Sbjct: 11 VLAGGVFDLLHVGHIHFLSQAKSLGDELVVIVAHDETVRMQKRREPVNPAEDRAELLRAL 70
Query: 167 A----PYCGNVAPVEFQIQFSSVRHLSP--------QQF-VEKLSREL---GVRGVVAGE 210
Y G+ +++++ VR ++P Q+F E+L EL G+ V
Sbjct: 71 KMVDEVYIGSPGTIDYEL----VRKINPDIVAIGPDQRFSCERLKEELRKHGINSEVIRI 126
Query: 211 NYRFGYKAAGDASELVRLCEEY 232
Y + A + + R+ E Y
Sbjct: 127 PYLYKEDRAKTSKIIQRIVETY 148
>sp|A9LZ95|LIPA_NEIM0 Lipoyl synthase OS=Neisseria meningitidis serogroup C (strain
053442) GN=lipA PE=3 SV=1
Length = 322
Score = 32.7 bits (73), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Query: 185 VRHLSPQQF--VEKLSRELGVRGVVAGENYRFGYKAAGDASELVRLCE 230
+R+++P+QF EK + ELG G R Y A A+E +R CE
Sbjct: 274 LRYVTPEQFKIFEKEAYELGFSNAAIGAMVRSSYHADEQAAEALRECE 321
>sp|Q01102|LYAM3_MOUSE P-selectin OS=Mus musculus GN=Selp PE=1 SV=1
Length = 768
Score = 32.3 bits (72), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 345 IDASHIHLEMDKVGFCNFDHSQDFKLLGIE 374
+D SH+H E C+F ++DF+LLG E
Sbjct: 521 LDCSHVHGEFGVGSICHFSCNEDFELLGSE 550
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.137 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 142,257,584
Number of Sequences: 539616
Number of extensions: 5814932
Number of successful extensions: 14641
Number of sequences better than 100.0: 26
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 14616
Number of HSP's gapped (non-prelim): 28
length of query: 380
length of database: 191,569,459
effective HSP length: 119
effective length of query: 261
effective length of database: 127,355,155
effective search space: 33239695455
effective search space used: 33239695455
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 62 (28.5 bits)